Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0C805
DateTue Jul 17 17:05:09 BST 2012
Unique Job ID1483826cdc4deb16

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1f0hA_
Top template information
PDB header:antimicrobial protein
Chain: A: PDB Molecule:cecropin a-magainin 2 hybrid peptide;
PDBTitle: cecropin a(1-8)-magainin 2(1-12) a2 in2 dodecylphosphocholine micelles
Confidence and coverage
Confidence: 13.2% Coverage: 59%
13 residues ( 59% of your sequence) have been modelled with 13.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20..
Sequence  MEFVAKLFKFFKDLLGKFLGNN
Secondary structure 
SS confidence 
Disorder  ??
????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1f0h chain A

3D model

Region: 5 - 19
Aligned: 13
Modelled: 15
Confidence: 13.2%
Identity: 77%
PDB header:antimicrobial protein
Chain: A: PDB Molecule:cecropin a-magainin 2 hybrid peptide;
PDBTitle: cecropin a(1-8)-magainin 2(1-12) a2 in2 dodecylphosphocholine micelles

Phyre2

PDB 1d9o chain A

3D model

Region: 5 - 19
Aligned: 13
Modelled: 15
Confidence: 13.2%
Identity: 77%
PDB header:membrane protein
Chain: A: PDB Molecule:cecropin a(1-8)-magainin 2 hybrid peptide analogue;
PDBTitle: solution structure of cecropin a(1-8)-magainin 2(1-12) hybrid peptide2 analogue(p3)

Phyre2
1
c1f0hA_
2
c1d9oA_



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1f0hA_
13.2 77 PDB header:antimicrobial protein
Chain: A: PDB Molecule:cecropin a-magainin 2 hybrid peptide;
PDBTitle: cecropin a(1-8)-magainin 2(1-12) a2 in2 dodecylphosphocholine micelles
2c1d9oA_
13.2 77 PDB header:membrane protein
Chain: A: PDB Molecule:cecropin a(1-8)-magainin 2 hybrid peptide analogue;
PDBTitle: solution structure of cecropin a(1-8)-magainin 2(1-12) hybrid peptide2 analogue(p3)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite