With RasMol
properly installed on your local computer you can visualise the
structures presented herein (see Section 4 for
help). Once ready you can proceed directly to the
top of the
hierarchy, this page has links to
all 20 folds studied in this work. Select a specific fold, for
example the Globin
fold. All
the rules are listed in red boxes, one rule per box. Underneath each
one you will find the list of positive matches. Clicking on the
domain identifier
(e.g. d1scta_)
opens a new frame with the corresponding SCOP page. The
secondary structure elements for each domain are presented
graphically; the colour of an element is a function of its
hydrophobicity while the height of the font depends on its size.
Clicking on RasMol icon
(
)
brings a view of the molecule which uses the same colour code. The
domain of interest is shown in white using a cartoon representation, the
rest of the molecule is shown in wireframe. If a rule involves a
secondary structure, this is shown in red.
Proceed to the top of the hierarchy.