You can download the executable version of PINALOG here. PINALOG1.0 is compatible with 32 bit Linux system. For 64 bit version, please contact firstname.lastname@example.org for more details. The package includes:
The PPIN data for different species extracted from the IntAct database is available for download from here. It should be noted that the alignment that might be obtained using human and yeast PPIN is different from the one described in the paper as this is the more updated data (IntAct data downloaded in May 2011).