3DLigandSite - Example Results
The results of three different example query proteins are available for viewing. These predictions can also be run as a job be selecting the Run Example link. If you choose to run the example there will be a delay before being able to view the results.
Example 1 - Target T0406 in CASP8, this protein binds Nickel. Its pdb code is 3di5. The prediction was made using a phyre model of the structure. View Example 1
Exampe 2 - Target T0453 in CASP8, this protein binds 3 Calcium ions. Its pdb code is 3ded. The prediction was made using a user provided model. View Example 2
Exampe 3 - Target T0396 in CASP8, this protein binds FAD. Its pdb code is 3gwl. The prediction was made using a phyre model. View Example 3
Exampe 4 - Target T0483 in CASP8, this protein binds ADP and 2 Magnesium ions. Its pdb code is 3dls. The prediction was made using a user provided model. View Example 4
The results for example 1 are worked through on the Help page.
View examples of how the Jmol display can be modified - Example displays.
