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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Nov 21

Fold library idPDB HeaderMoleculeTitle
c5cz3B_ viral protein Chain: B: m64r; crystal structure of myxoma virus m64
c4rmxC_ hydrolase Chain: C: phi92_gp150; apo crystal structure of the colanidase tailspike protein gp150 of2 phage phi92
c5ccfA_ transferase Chain: A: adp-dependent glucokinase; structure of mouse adp-dependent glucokinase
c4wxlB_ hydrolase Chain: B: peptide deformylase; crystal structure of a peptide deformylase from haemophilus influenzae2 complex with actinonin
c4wvrD_ cell adhesion Chain: D: down syndrome cell adhesion molecule, isoform ak; crystal structure of dscam1 ig7 domain, isoform 5
c5elmB_ isomerase Chain: B: asp/glu_racemase family protein; crystal structure of l-aspartate/glutamate specific racemase in2 complex with l-glutamate
c5eaxB_ hydrolase/dna Chain: B: dna replication atp-dependent helicase/nuclease dna2; crystal structure of dna2 in complex with an ssdna
c5dovB_ oxidoreductase Chain: B: jamj; crystal structure of jamj enoyl reductase (apo form)
c5dh0B_ protein binding Chain: B: siderophore periplasmic binding protein; structure of the siderophore periplasmic binding protein from the2 fuscachelin gene cluster of thermobifida fusca in p41
c5dp1A_ oxidoreductase Chain: A: curk; crystal structure of curk enoyl reductase
c5cefA_ oxidoreductase Chain: A: aspartate-semialdehyde dehydrogenase; cystal structure of aspartate semialdehyde dehydrogenase from2 cryptococcus neoformans
c5e97B_ hydrolase Chain: B: heparanase; glycoside hydrolase ligand structure 1
c5e5nB_ hydrolase Chain: B: polyketide synthase pksl; ketosynthase from module 6 of the bacillaene synthase from bacillus2 subtilis 168 (c167s mutant, crystal form 1)
c4ru4E_ structural protein Chain: E: tail spike protein gp49; crystal structure of the tailspike protein gp49 from pseudomonas phage2 lka1
c5az3A_ transport protein Chain: A: abc-type transporter, periplasmic component; crystal structure of heme binding protein hmut
c4zltA_ chemokine binding protein/chemokine Chain: A: putative uncharacterized protein; crystal structure of viral chemokine binding protein r17 in complex2 with ccl3
c5bobA_ translation Chain: A: translation initiation factor 2 (if-2 gtpase); crystal structure of the meningitis pathogen streptococcus suis2 adhesion fhb
c5a31R_ cell cycle Chain: R: the anaphase-promoting complex chain r; structure of the human apc-cdh1-hsl1-ubch10 complex.
c4ru3A_ cell invasion Chain: A: puncturing protein gp41; crystal structure of the cell puncturing protein gp41 from pseudomonas2 phage sn
c5c3cB_ protein binding Chain: B: cbbq/nirq/norq domain protein; structural characterization of a newly identified component of alpha-2 carboxysomes: the aaa+ domain protein cso-cbbq
c5e27B_ cell adhesion Chain: B: resuscitation-promoting factor rpfb; the structure of resuscitation promoting factor b from m. tuberculosis2 reveals unexpected ubiquitin-like domains
c5a31G_ cell cycle Chain: G: anaphase-promoting complex subunit cdc26; structure of the human apc-cdh1-hsl1-ubch10 complex.
c4wxoA_ transferase Chain: A: uncharacterized protein; sadc (300-487) from pseudomonas aeruginosa pao1
c5a31A_ cell cycle Chain: A: anaphase-promoting complex subunit 1; structure of the human apc-cdh1-hsl1-ubch10 complex.
c5e6pA_ signaling protein Chain: A: plexin-b2; plexinb2 cytoplasmic region/pdz-rhogef pdz domain complex
c5ctmB_ hydrolase Chain: B: beta-lactamase; structure of bpu1 beta-lactamase
c5a31N_ cell cycle Chain: N: anaphase-promoting complex subunit 2; structure of the human apc-cdh1-hsl1-ubch10 complex.
c4ru5C_ lyase Chain: C: tailspike gp27; crystal structure of the pseudomonas phage phi297 tailspike gp61
c5e97A_ hydrolase Chain: A: heparanase; glycoside hydrolase ligand structure 1
c4x62U_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c5cywB_ viral protein Chain: B: interferon antagonist c7; crystal structure of vaccinia virus c7
c4z92C_ virus Chain: C: capsid subunit vp0; crystal structure of parechovirus-1 virion
c4x66U_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4x64U_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c4x65U_ ribosome/antibiotic Chain: U: 30s ribosomal protein thx; crystal structure of 30s ribosomal subunit from thermus thermophilus
c5br8U_ ribosome Chain: U: 30s ribosomal protein thx; ambient-temperature crystal structure of 30s ribosomal subunit from2 thermus thermophilus in complex with paromomycin
c5a31W_ cell cycle Chain: W: anaphase-promoting complex subunit cdc26; structure of the human apc-cdh1-hsl1-ubch10 complex.
c5e5nD_ hydrolase Chain: D: polyketide synthase pksl; ketosynthase from module 6 of the bacillaene synthase from bacillus2 subtilis 168 (c167s mutant, crystal form 1)
c5aorA_ hydrolase/rna Chain: A: dosage compensation regulator; structure of mle rna adp alf4 complex
c5di3A_ hydrolase Chain: A: adp-ribosylation factor-like protein 3; crystal structure of arl13b in complex with arl3 of chlamydomonas2 reinhardtii
c4y23A_ transferase Chain: A: gamma glutamyl transpeptidase,gamma-glutamyltranspeptidase; crystal structure of t399a precursor mutant protein of gamma-glutamyl2 transpeptidase from bacillus licheniformis
c5e50A_ lyase Chain: A: aprataxin and pnk-like factor; aplf/xrcc4 complex
c2n5nA_ dna binding protein Chain: A: chromodomain-helicase-dna-binding protein 4; structure of an n-terminal domain of chd4
c5dp2A_ oxidoreductase Chain: A: curf; curf er cyclopropanase from curacin a biosynthetic pathway
c4z92A_ virus Chain: A: capsid subunit vp1; crystal structure of parechovirus-1 virion
c4z92B_ virus Chain: B: capsid subunit vp3; crystal structure of parechovirus-1 virion
c5a4pA_ ligase Chain: A: ubiquitin-conjugating enzyme e2 z; structure of ube2z provides functional insight into2 specificity in the fat10 conjugation machinery
c5bvlA_ de novo protein Chain: A: designed tim barrel stim11; crystal structure of a de novo designed tim-barrel


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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