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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Oct 24

Fold library idPDB HeaderMoleculeTitle
c4ykiA_ membrane protein Chain: A: ml032222a iglur; mnemiopsis leidyi ml032222a iglur lbd glycine complex
c5c3qB_ oxidoreductase Chain: B: thymine dioxygenase; crystal structure of the full-length neurospora crassa t7h in complex2 with alpha-kg and thymine (t)
c5ancK_ translation Chain: K: elongation factor tu gtp-binding domain-containing mechanism of eif6 release from the nascent 60s ribosomal2 subunit
c5a06E_ oxidoreductase Chain: E: aldose-aldose oxidoreductase; crystal structure of aldose-aldose oxidoreductase from2 caulobacter crescentus complexed with sorbitol
c5e38D_ transferase Chain: D: uracil phosphoribosyltransferase; structural basis of mapping the spontaneous mutations with 5-2 flourouracil in uracil phosphoribosyltransferase from mycobacterium3 tuberculosis
c4zc0D_ hydrolase Chain: D: replicative dna helicase; structure of a dodecameric bacterial helicase
c5ancA_ translation Chain: A: 60s ribosomal protein l3; mechanism of eif6 release from the nascent 60s ribosomal2 subunit
c5a53C_ transcription Chain: C: ribosome biogenesis protein rpf2; crystal structure of the rpf2-rrs1 complex
c4w7wA_ hydrolase Chain: A: cellulase; high-resolution structure of xaccel5a in complex with cellopentaose
c5dagA_ peptide binding protein Chain: A: protein af-10; crystal structure of pzp domain of human af10 protein
c4y9iA_ oxidoreductase Chain: A: mycobacterium tuberculosis paralogous family 11; structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
c5cffE_ transcription/rna binding protein Chain: E: staufen; crystal structure of miranda/staufen dsrbd5 complex
c5d9aI_ viral protein Chain: I: polymerase basic protein 2; influenza c virus rna-dependent rna polymerase - space group p212121
c4wfb3_ ribosome Chain: 3: 50s ribosomal protein l35; the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with bc-3205
c5de0D_ oxidoreductase Chain: D: deferrochelatase; dye-decolorizing protein from v. cholerae
c4wceJ_ ribosome Chain: J: 50s ribosomal protein l16; the crystal structure of the large ribosomal subunit of staphylococcus2 aureus
c5an9G_ translation Chain: G: 60s ribosomal protein l24; mechanism of eif6 release from the nascent 60s ribosomal subunit
c4rltA_ lyase/lyase inhibitor Chain: A: (3r)-hydroxyacyl-acp dehydratase subunit hada; crystal structure of (3r)-hydroxyacyl-acp dehydratase hadab hetero-2 dimer from mycobacterium tuberculosis complexed with fisetin
c4wfaU_ ribosome Chain: U: 50s ribosomal protein l28; the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with linezolid
c4zc0A_ hydrolase Chain: A: replicative dna helicase; structure of a dodecameric bacterial helicase
c5cx8A_ membrane protein Chain: A: lipoprotein ragb; structure of ragb, a major immunodominant virulence factor of2 porphyromonas gingivalis.
c4wf9E_ ribosome Chain: E: 50s ribosomal protein l6; the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with telithromycin
c5bncB_ heme binding protein Chain: B: heme binding protein msmeg_6519; structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
c5d9aB_ viral protein Chain: B: rna-directed rna polymerase catalytic subunit; influenza c virus rna-dependent rna polymerase - space group p212121
c4wojB_ oxidoreductase Chain: B: aspartate-semialdehyde dehydrogenase; aspartate semialdehyde dehydrogenase from francisella tularensis
c4wbeB_ rna binding protein Chain: B: caprin-1; crystal structure of the hr-1 domain of human caprin-1 in the c1212 space group
c4wyuA_ structural protein/peptide Chain: A: protein scribble homolog; crystal structure of scribble pdz34 tandem in complex with its target2 peptide
c4ybnB_ oxidoreductase Chain: B: flavin-nucleotide-binding protein; structure of the fad and heme binding protein msmeg_4975 from2 mycobacterium smegmatis
c4wfbB_ ribosome Chain: B: 50s ribosomal protein l3; the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with bc-3205
c3x0hA_ hydrolase Chain: A: carbohydrate esterase 1; crystal structure of a carbohydrate esterase family 1 from talaromyces2 cellulolyticus
c4wfaG_ ribosome Chain: G: 50s ribosomal protein l13; the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with linezolid
c5an9B_ translation Chain: B: 60s ribosomal protein l9; mechanism of eif6 release from the nascent 60s ribosomal subunit
c4wfbS_ ribosome Chain: S: 50s ribosomal protein l25; the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with bc-3205
c5cm2M_ transferase Chain: M: trna methyltransferase activator subunit; insights into molecular plasticity in protein complexes from trm9-2 trm112 trna modifying enzyme crystal structure
c5cbkA_ signaling protein Chain: A: shhtl5; crystal structure of the strigolactone receptor shhtl5 from striga2 hermonthica
c3jb4B_ virus Chain: B: vp0; structure of ljungan virus: insight into picornavirus packaging
c5ancC_ translation Chain: C: 60s acidic ribosomal protein p0; mechanism of eif6 release from the nascent 60s ribosomal2 subunit
c5cffD_ transcription/rna binding protein Chain: D: miranda; crystal structure of miranda/staufen dsrbd5 complex
c5d9aD_ viral protein Chain: D: polymerase acidic protein; influenza c virus rna-dependent rna polymerase - space group p212121
c5a53A_ transcription Chain: A: regulator of ribosome biosynthesis; crystal structure of the rpf2-rrs1 complex
c4wf9C_ ribosome Chain: C: 50s ribosomal protein l4; the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with telithromycin
c5d68C_ signaling protein Chain: C: krev interaction trapped protein 1; crystal structure of krit1 ard-ferm
c3jb4C_ virus Chain: C: vp3; structure of ljungan virus: insight into picornavirus packaging
c5e7qB_ transferase Chain: B: acyl-coa synthetase; acyl-coa synthetase ptmm4 from streptomyces platensis
c5cm2Z_ transferase Chain: Z: trna methyltransferase; insights into molecular plasticity in protein complexes from trm9-2 trm112 trna modifying enzyme crystal structure
c5bmuF_ translation/ligase Chain: F: glutamate--trna ligase; the crystal structure of the gst-like domains complex of aimp3-eprs2 mutant c92sc105sc123s
c4wf9T_ ribosome Chain: T: 50s ribosomal protein l27; the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with telithromycin
c5a53B_ transcription Chain: B: regulator of ribosome biosynthesis; crystal structure of the rpf2-rrs1 complex
c2n2eA_ lantibiotic-binding protein Chain: A: nisin immunity protein; nmr solution structure of the c-terminal domain of nisi, a lipoprotein2 from lactococcus lactis which confers immunity against nisin
c4wfbQ_ ribosome Chain: Q: 50s ribosomal protein l23; the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with bc-3205
c4za6A_ signaling protein Chain: A: tetr family transcriptional regulator; structure of the r. erythropolis transcriptional repressor qsdr from2 tetr family
c5anbI_ translation Chain: I: eukaryotic translation initiation factor 6; mechanism of eif6 release from the nascent 60s ribosomal subunit
c5anbD_ translation Chain: D: 60s ribosomal protein l12; mechanism of eif6 release from the nascent 60s ribosomal subunit
c5a34F_ ligase Chain: F: aminoacyl trna synthase complex-interacting the crystal structure of the gst-like domains complex of eprs-aimp2
c5c6kB_ hydrolase Chain: B: integrase; bacteriophage p2 integrase catalytic domain
c4w8oA_ oxidoreductase Chain: A: luciferase-like enzymeamp-coa-ligase; structure of the luciferase-like enzyme from the nonluminescent2 zophobas morio mealworm
c4xukB_ hydrolase Chain: B: putative hydrolase; crystal structure of hydrolase aboph in beta lactamase superfamily
c4z79A_ protein binding Chain: A: leiomodin-1 actin-binding site 2 (abs2); leiomodin-1 actin-binding site 2 (abs2)
c2n32A_ lantibiotic-binding protein Chain: A: nisin immunity protein; nmr solution structure of the n-terminal domain of nisi, a lipoprotein2 from lactococcus lactis which confers immunity against nisin
c5anrC_ rna binding protein Chain: C: eukaryotic translation initiation factor 4e transporter; structure of a human 4e-t - ddx6 - cnot1 complex
c3jb4A_ virus Chain: A: vp1; structure of ljungan virus: insight into picornavirus packaging
c4zdmA_ membrane protein Chain: A: glutamate receptor kainate-like protein; pleurobrachia bachei iglur3 lbd glycine complex


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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