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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2015 Feb 14

Fold library idPDB HeaderMoleculeTitle
c4wy4C_ membrane protein Chain: C: synaptosomal-associated protein 29; crystal structure of autophagic snare complex
c4rv2B_ lyase Chain: B: maoc family protein; crystal structure of (3r)-hydroxyacyl-acp dehydratase hadab hetero-2 dimer from mycobacterium smegmatis
c3j89A_ synthetic peptide Chain: A: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c4tmcB_ flavoprotein Chain: B: old yellow enzyme; crystal structure of old yellow enzyme from candida macedoniensis2 aku4588 complexed with p-hydroxybenzaldehyde
c4oyuB_ protein binding Chain: B: muskelin; crystal structure of the n-terminal domains of muskelin
c4xc8B_ isomerase Chain: B: methylmalonyl-coa mutase; isobutyryl-coa mutase fused with bound butyryl-coa, gdp, and mg and2 without cobalamin (apo-icmf/gdp)
c4pphB_ plant protein Chain: B: conglutin gamma; crystal structure of conglutin gamma, a unique basic 7s globulin from2 lupine seeds
c4n1aE_ protein binding/protein binding Chain: E: cell divisionftsk/spoiiie; thermomonospora curvata eccc (atpases 2 and 3) in complex with a2 signal sequence peptide
c4xvhA_ hydrolase Chain: A: carbohydrate esterase family 2 (ce2); crystal structure of a corynascus thermopiles (myceliophthora2 fergusii) carbohydrate esterase family 2 (ce2) enzyme plus3 carbohydrate binding domain (cbd)
c4u6bC_ hydrolase Chain: C: conserved hypothetical lipoprotein; zg3597, a family 117 glycoside hydrolase, produced by the marine2 bacterium zobellia galactanivorans
c4pzdB_ oxidoreductase Chain: B: 3-hydroxyacyl-coa dehydrogenase; crystal structure of (r)-3-hydroxy-acyl-coa reductase paah1 in complex2 with nad+
c3j89N_ synthetic peptide Chain: N: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c4xiwH_ lyase Chain: H: carbonic anhydrase, alpha type; carbonic anhydrase cah3 from chlamydomonas reinhardtii in complex with2 acetazolamide
c4pkyE_ transcription/cell cycle Chain: E: transforming acidic coiled-coil-containing protein 3; arnt/hif transcription factor/coactivator complex
c3j89G_ synthetic peptide Chain: G: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c4u6dB_ hydrolase Chain: B: conserved hypothetical periplasmic protein; zg3615, a family 117 glycoside hydrolase in complex with beta-3,6-2 anhydro-l-galactose
c4xijA_ oxidoreductase Chain: A: shikimate 5-dehydrogenase; crystal structure of a shikimate 5-dehydrogenase from mycobacterium2 fortuitum determined by iodide sad phasing
c4umfC_ hydrolase Chain: C: 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase kdsc; crystal structure of 3-deoxy-d-manno-octulosonate 8-2 phosphate phosphatase from moraxella catarrhalis in3 complex with magnesium ion, phosphate ion and kdo molecule
c3wxeA_ hydrolase/protein binding Chain: A: uncharacterized protein; crystal structure of cyld usp domain (c596s) in complex with met1-2 linked diubiquitin
c4s0mC_ transferase Chain: C: nucleoside diphosphate kinase; crystal structure of nucleoside diphosphate kinase at 1.92 a2 resolution from acinetobacter baumannii
c4xs5D_ transport protein Chain: D: sulfate transporter/antisigma-factor antagonist stas; crystal structure of sulfate transporter/antisigma-factor antagonist2 stas from dyadobacter fermentans dsm 18053
c4whbC_ hydrolase Chain: C: phenylurea hydrolase b; crystal structure of phenylurea hydrolase b
c4s1cA_ hydrolase Chain: A: lmo1466 protein; crystal structure of l. monocytogenes phosphodiesterase pgph hd domain
c4d7sB_ transport protein Chain: B: sthk_cnbd_cgmp; structure of the sthk carboxy-terminal region in complex2 with cgmp
c2mqsD_ hydrolase Chain: D: thp_t_chain; transient collagen triple helix binding to a key metalloproteinase in2 invasion and development: spin labels to structure
c3j89O_ synthetic peptide Chain: O: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c4q0cA_ transferase Chain: A: virulence sensor protein bvgs; 3.1 a resolution crystal structure of the b. pertussis bvgs2 periplasmic domain
c4xv0A_ hydrolase Chain: A: beta-xylanase; crystal structure of an endo-beta-1,4-xylanase (glycoside hydrolase2 family 10/gh10) enzyme from trichoderma reesei
c3wpbA_ dna binding protein Chain: A: toll-like receptor 9; crystal structure of horse tlr9 (unliganded form)
c2mujA_ membrane protein Chain: A: serine-repeat antigen protein; plasmodium falciparum sera protein peptide analogues having short2 helical regions induce protection against malaria
c3j89H_ synthetic peptide Chain: H: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c3j89S_ synthetic peptide Chain: S: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c4v1sA_ hydrolase Chain: A: alpha-1,6-mannanase; structure of the gh76 alpha-mannanase bt2949 from2 bacteroides thetaiotaomicron
c4wgxD_ hydrolase Chain: D: molinate hydrolase; crystal structure of molinate hydrolase
c4wzyA_ transferase Chain: A: maltokinase; structure of mycobacterial maltokinase, the missing link in the2 essential glge-pathway (atp complex)
c4xllB_ unknown function Chain: B: dj-1 family protein; toxoplasma gondii dj-1, oxidized
c3j89M_ synthetic peptide Chain: M: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c4rv2A_ lyase Chain: A: upf0336 protein msmeg_1340/msmei_1302; crystal structure of (3r)-hydroxyacyl-acp dehydratase hadab hetero-2 dimer from mycobacterium smegmatis
c4xvvB_ chaperone Chain: B: acid stress chaperone hdeb; crystal structure of an acid stress chaperone hdeb (kpn_03484) from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.70 a3 resolution
c3j89E_ synthetic peptide Chain: E: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c4wy4D_ membrane protein Chain: D: synaptosomal-associated protein 29; crystal structure of autophagic snare complex
c4qs9A_ transferase Chain: A: hexokinase-1; arabidopsis hexokinase 1 (athxk1) mutant s177a structure in glucose-2 bound form
c3j89F_ synthetic peptide Chain: F: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c4wtxA_ cell adhesion Chain: A: integrin beta-4; crystal structure of the fourth fniii domain of integrin beta4
c2mxzA_ hydrolase Chain: A: l-alanyl-d-glutamate peptidase; bacteriophage t5 l-alanoyl-d-glutamate peptidase comlpex with zn2+2 (endo t5-zn2+)
c4xvoB_ transferase Chain: B: l,d-transpeptidase; l,d-transpeptidase from mycobacterium smegmatis
c4xx6A_ hydrolase Chain: A: beta-xylanase; crystal structure of a glycosylated endo-beta-1,4-xylanase (glycoside2 hydrolase family 10/gh10) enzyme from gloeophyllum trabeum
c4nh0A_ cell cycle Chain: A: cell divisionftsk/spoiiie; cytoplasmic domain of the thermomonospora curvata type vii secretion2 atpase eccc
c4xkzA_ ligase Chain: A: valine-trna ligase; crystal structure of the c-terminal anticodon loop binding domain of a2 valyl-trna synthetase from pseudomonas aeruginosa
c4u3hA_ de novo protein Chain: A: fn3con; crystal structure of fn3con
c3j89J_ synthetic peptide Chain: J: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c4xuvB_ hydrolase Chain: B: glycoside hydrolase family 105 protein; crystal structure of a glycoside hydrolase family 105 (gh105) enzyme2 from thielavia terrestris
c3j89Q_ synthetic peptide Chain: Q: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c3j89K_ synthetic peptide Chain: K: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c4rmbB_ cell adhesion Chain: B: serine rich repeat protein-1 (srr-1); crystal structure of keratin 4 binding domain of surface adhesin srr-12 of s.agalactiae
c4oaqA_ oxidoreductase Chain: A: r-specific carbonyl reductase; crystal structure of the r-specific carbonyl reductase from candida2 parapsilosis atcc 7330
c3j89C_ synthetic peptide Chain: C: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c2mk6A_ gene regulation Chain: A: adapter protein meca; structure determination of substrate binding domain of meca
c4x7qA_ transferase/transferase inhibitor Chain: A: serine/threonine-protein kinase pim-2; pim2 kinase in complex with compound 1s
c4ut1A_ motor protein Chain: A: flagellar hook-associated protein; the structure of the flagellar hook junction protein flgk2 from burkholderia pseudomallei
c4uuzC_ dna-binding protein Chain: C: dna replication licensing factor mcm2; mcm2-histone complex
c4xc4A_ hormone Chain: A: insulin; insulin co-crystallizes in the presence of it beta-cell chaperone2 sulfatide
c3j89P_ synthetic peptide Chain: P: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c4x4wB_ rna binding protein Chain: B: cca trna nucleotidyltransferase 1, mitochondrial; crystal structure of the full-length human mitochondrial cca-adding2 enzyme
c3j89D_ synthetic peptide Chain: D: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c2mqsC_ hydrolase Chain: C: thp_l_and_m_chain; transient collagen triple helix binding to a key metalloproteinase in2 invasion and development: spin labels to structure
c3j89L_ synthetic peptide Chain: L: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c2mswA_ transferase Chain: A: response regulator/sensor histidine kinase; ligand-induced folding of a receiver domain
c4xxpA_ hydrolase Chain: A: putative uncharacterized protein (rv0315 ortholog); crystal structure of an uncharacterized protein (rv0315 ortholog) from2 mycobacterium paratuberculosis
c4uer9_ translation Chain: 9: es31; 40s-eif1-eif1a-eif3-eif3j translation initiation complex from2 lachancea kluyveri
c3j89I_ synthetic peptide Chain: I: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c2mqsB_ hydrolase Chain: B: thp_l_and_m_chain; transient collagen triple helix binding to a key metalloproteinase in2 invasion and development: spin labels to structure
c4wy4B_ membrane protein Chain: B: syntaxin-17; crystal structure of autophagic snare complex
c4xc4C_ hormone Chain: C: insulin; insulin co-crystallizes in the presence of it beta-cell chaperone2 sulfatide
c3j89R_ synthetic peptide Chain: R: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c3j89B_ synthetic peptide Chain: B: synthetic peptide; structural plasticity of helical nanotubes based on coiled-coil2 assemblies
c4n6oB_ hydrolase/hydrolase inhibitor Chain: B: cystatin-m; crystal structure of reduced legumain in complex with cystatin e/m
c4uerb_ translation Chain: B: us2; 40s-eif1-eif1a-eif3-eif3j translation initiation complex from2 lachancea kluyveri
c4lm8A_ electron transport Chain: A: extracellular iron oxide respiratory system surface crystal structure of the outer membrane decaheme cytochrome mtrc


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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