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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Dec 20

Fold library idPDB HeaderMoleculeTitle
c4cpdA_ oxidoreductase Chain: A: alcohol dehydrogenase; alcohol dehydrogenase tadh from thermus sp. atn1
c4ur7B_ lyase Chain: B: keto-deoxy-d-galactarate dehydratase; crystal structure of keto-deoxy-d-galactarate dehydratase2 complexed with pyruvate
c3wvfA_ chaperone Chain: A: membrane protein insertase yidc; crystal structure of yidc from escherichia coli
c4ru1C_ transport protein Chain: C: monosaccharide abc transporter substrate-binding protein, crystal structure of carbohydrate transporter acei_1806 from2 acidothermus cellulolyticus 11b, target efi-510965, in complex with3 myo-inositol
c4v30A_ signaling protein Chain: A: cereblon isoform 4; cereblon isoform 4 from magnetospirillum gryphiswaldense in2 complex with lenalidomide
c4qvhA_ transferase Chain: A: maltose-binding periplasmic protein; crystal structure of the essential mycobacterium tuberculosis2 phosphopantetheinyl transferase pptt, solved as a fusion protein with3 maltose binding protein
c4d0uD_ viral protein Chain: D: fiber protein; crystal structure of the fiber head domain of the2 atadenovirus snake adenovirus 1, selenomethionine-3 derivative
c4tr5A_ transferase Chain: A: c3larvin; c3larvin toxin, an adp-ribosyltransferase from paenibacillus larvae
c4cw5B_ oxidoreductase Chain: B: dfna; crystal structure of the enoyl reductase domain of dfna2 from bacillus amyloliquefaciens
c4o9cC_ transferase Chain: C: acetyl-coa acetyltransferase; crystal structure of beta-ketothiolase (phaa) from ralstonia eutropha2 h16
c4rwwB_ protein binding Chain: B: lmo2692 protein; crystal structure of l. monocytogenes psta in complex with cyclic-di-2 amp
c4quwA_ lyase Chain: A: aldehyde decarbonylase; crystal structure of the apo form of cyanobacterial aldehyde-2 deformylating oxygenase
c4riqU_ transferase/protein binding Chain: U: set1/ash2 histone methyltransferase complex subunit ash2; crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
c4wyqA_ hydrolase/protein binding Chain: A: endoribonuclease dicer; crystal structure of the dicer-trbp interface
c4ubwB_ transferase Chain: B: acetyl-coa acetyltransferase fada5; apo structure of the 3-ketoacyl-coa thiolase fada5 from m.2 tuberculosis
c4qjuB_ dna binding protein/dna Chain: B: dna-binding protein hu; crystal structure of dna-bound nucleoid associated protein, sav1473
c4pl9A_ transferase Chain: A: ethylene receptor 1; structure of the catalytic domain of etr1 from arabidopsis thaliana
c4cz8A_ membrane protein Chain: A: na+/h+ antiporter, putative; structure of the sodium proton antiporter panhap from2 pyrococcus abyssii at ph 8.
c2mmuA_ cell cycle Chain: A: cell division protein crga; structure of m. tuberculosis crga membrane protein in lipid bilayer
c4tveA_ isomerase Chain: A: naumovozyma dairenensis eps1p; structure of the first two thioredoxin domains of naumovozyma2 dairenensis eps1p
c4tvuA_ isomerase Chain: A: trehalose synthase; crystal structure of trehalose synthase from deinococcus radiodurans2 reveals a closed conformation for catalysis of the intramolecular3 isomerization
c4walA_ protein binding/rna Chain: A: branchpoint-bridging protein; crystal structure of selenomethionine msl5 protein in complex with rna2 at 2.2 a
c4riqI_ transferase/protein binding Chain: I: set1/ash2 histone methyltransferase complex subunit ash2; crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
c4rquA_ oxidoreductase Chain: A: alcohol dehydrogenase; alcohol dehydrogenase crystal structure in complex with nad
c4tw5A_ isomerase Chain: A: eps1p; structure of the first two thioredoxin domains of saccharomyces2 cerevisiae eps1p
c4uzxA_ rna binding protein Chain: A: protein tho1; high-resolution nmr structures of the domains of saccharomyces2 cerevisiae tho1
c4r1dA_ hydrolase/hydrolase inhibitor Chain: A: uncharacterized protein; the crystal structure of tle4-tli4 complex
c2mtyA_ peptide binding Chain: A: starp antigen; 3d structure determination of starp peptides implicated in p.2 falciparum invasion of hepatic cells
c2mwnA_ structural protein/signaling protein Chain: A: amyloid beta a4 precursor protein-binding family b member talin-f3 / riam n-terminal peptide complex
c4chlA_ oxidoreductase Chain: A: persulfide dioxygenase ethe1, mitochondrial; human ethylmalonic encephalopathy protein 1 (hethe1)
c4v29B_ calcium binding protein Chain: B: at3g17980; the crystal structure of arabidopsis thaliana car4 in2 complex with two calcium ions
c4wutA_ transport protein Chain: A: abc transporter substrate binding protein (ribose); crystal structure of an abc transporter solute binding protein2 (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220)3 with bound d-fucose
c3wy7D_ transferase Chain: D: 8-amino-7-oxononanoate synthase; crystal structure of mycobacterium smegmatis 7-keto-8-aminopelargonic2 acid (kapa) synthase biof
c4r1dB_ hydrolase/hydrolase inhibitor Chain: B: uncharacterized protein; the crystal structure of tle4-tli4 complex
c4qmkB_ toxin Chain: B: type iii secretion system effector protein exou; crystal structure of type iii effector protein exou (exou)
c4cw4A_ transferase Chain: A: beta-ketoacyl synthase; crystal structure of the noncanonical ketosynthase faby2 from p. aeruginosa
c4rwrB_ viral protein Chain: B: stage ii sporulation protein d; 2.1 angstrom crystal structure of stage ii sporulation protein d from2 bacillus anthracis
c4riqF_ transferase/protein binding Chain: F: set1/ash2 histone methyltransferase complex subunit ash2; crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
c2mukX_ transcription Chain: X: auxin-responsive protein iaa17; 1h, 13c, and 15n chemical shift assignments for aux/iaa17
c3wo4C_ immune system Chain: C: interleukin-18 receptor accessory protein; crystal structure of the il-18 signaling ternary complex
c4u83A_ oxidoreductase Chain: A: acyl-coa dehydrogenase; structure of brucella abortus butyryl-coa dehydrogenase
c4ropA_ lyase Chain: A: enolase; crystal structure of enolase from synechococcus elongatus
c4riqX_ transferase/protein binding Chain: X: set1/ash2 histone methyltransferase complex subunit ash2; crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
c4wyqB_ hydrolase/protein binding Chain: B: risc-loading complex subunit tarbp2; crystal structure of the dicer-trbp interface
c4v3eA_ signaling protein Chain: A: it4var07 cidra; the cidra domain from it4var07 pfemp1 bound to endothelial2 protein c receptor
c4riqO_ transferase/protein binding Chain: O: set1/ash2 histone methyltransferase complex subunit ash2; crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
c4roqA_ lyase Chain: A: malyl-coa lyase/beta-methylmalyl-coa lyase; crystal structure of malyl-coa lyase from methylobacterium extorquens
c4riqL_ transferase/protein binding Chain: L: set1/ash2 histone methyltransferase complex subunit ash2; crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
c2mu6A_ peptide binding Chain: A: starp antigen; 3d structure determination of starp peptides implicated in p.2 falciparum invasion of hepatic cells
c4r7fA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (parmer_01801) from2 parabacteroides merdae atcc 43184 at 2.30 a resolution
c4riqR_ transferase/protein binding Chain: R: set1/ash2 histone methyltransferase complex subunit ash2; crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)
c4wzzA_ transport protein Chain: A: putative sugar abc transporter, substrate-binding protein; crystal structure of an abc transporter solute binding protein2 (ipr025997) from clostridium phytofermentas (cphy_0583, target efi-3 511148) with bound l-rhamnose
c4rwhA_ signaling protein Chain: A: t-lymphocyte activation antigen cd80; crystal structure of t cell costimulatory ligand b7-1 (cd80)
c4v3iA_ unknown function Chain: A: vca0115; crystal structure of tssl from vibrio cholerae.
c4riqC_ transferase/protein binding Chain: C: set1/ash2 histone methyltransferase complex subunit ash2; crystal structure of dpy-30 dimerization/docking domain in complex2 with ash2l sdc1-dpy-30 interacting region (sdi)


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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