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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Dec 13

Fold library idPDB HeaderMoleculeTitle
c4cyyA_ hydrolase Chain: A: pantetheinase; the structure of vanin-1: defining the link between2 metabolic disease, oxidative stress and inflammation
c4wbxC_ oxidoreductase Chain: C: 2-keto acid:ferredoxin oxidoreductase subunit alpha; conserved hypothetical protein pf1771 from pyrococcus furiosus solved2 by sulfur sad using swiss light source data
c2mvdA_ hormone Chain: A: insulin a chain; solution structure of [glnb22]-insulin mutant at ph 1.9
c4qunB_ hydrolase Chain: B: tyrosine-protein phosphatase non-receptor type 3; crystal structure of the ptpn3 (ptph1) catalytic domain c842s mutant
c4tjvA_ protein transport Chain: A: vacuolar-sorting receptor 1; crystal structure of protease-associated domain of arabidopsis2 vacuolar sorting receptor 1
c4rksB_ transferase Chain: B: putative uncharacterized protein ta1305; crystal structure of mevalonate-3-kinase from thermoplasma acidophilum2 (mevalonate bound)
c4u0zH_ transferase Chain: H: adenosine monophosphate-protein transferase ficd; eukaryotic fic domain containing protein with bound apcpp
c3j8eG_ transport protein/isomerase Chain: G: ryanodine receptor 1; cryo-em structure of ryanodine receptor/calstabin-2 complex
c4ombB_ transport protein Chain: B: phosphate binding protein; phosphate binding protein
c4uoxB_ transferase Chain: B: putrescine aminotransferase; crystal structure of ygjg in complex with pyridoxal-5'-phosphate2 and putrescine
c4ttrA_ transferase Chain: A: dephospho-coa kinase; crystal structure of legionella pneumophila dephospho-coa kinase in2 complex with bu2
c4leiB_ transferase Chain: B: ndp-forosamyltransferase; spinosyn forosaminyltransferase spnp
c4x23V_ structural protein/dna Chain: V: cenp-c; crystal structure of cenp-c in complex with the nucleosome core2 particle
c4uweD_ signaling protein Chain: D: ryanodine receptor 1; structure of the ryanodine receptor at resolution of 8.5 a2 in partially open state
c4rndC_ hydrolase Chain: C: v-type proton atpase subunit d; crystal structure of the subunit df-assembly of the eukaryotic v-2 atpase.
c4rv1F_ de novo protein Chain: F: engineered protein or497; crystal structure of engineered protein. northeast structural genomics2 consortium (nesg) target or497.
c4r61A_ viral protein Chain: A: gp41-based construct covnhr3-abc; crystal structure of a rationally designed single-chain protein2 mimicking a trimeric gp41 n-terminal heptad-repeat region
c4cgcC_ cell cycle Chain: C: echinoderm microtubule-associated protein-like 4; crystal structure of the trimerization domain of human eml4
c4cfiA_ structural protein Chain: A: flagellin; 3d structure of flic from burkholderia pseudomallei
c4u2mA_ transcription Chain: A: zinc finger and btb domain-containing protein 17,b-cell crystal structure of a complex of the miz1- and bcl6 poz domains.
c4cgcB_ cell cycle Chain: B: echinoderm microtubule-associated protein-like 4; crystal structure of the trimerization domain of human eml4
c4ndvB_ sugar binding protein Chain: B: alpha-galactosyl-binding lectin; crystal structure of l. decastes alpha-galactosyl-binding lectin in2 complex with globotriose
c4waiD_ metal binding protein Chain: D: comf operon protein 2; structural characterization of the late competence protein comfb from2 bacillus subtilis.
c4czbB_ membrane protein Chain: B: na(+)/h(+) antiporter 1; structure of the sodium proton antiporter mjnhap1 from2 methanocaldococcus jannaschii at ph 8.
c4uwaD_ signaling protein Chain: D: ryanodine receptor 1; structure of the ryanodine receptor at resolution of2 6.1 a in closed state
c4ra6A_ hydrolase Chain: A: l-asparaginase; crystal structure of linker less pyrococcus furiosus l-asparaginase
c4cgbE_ cell cycle Chain: E: echinoderm microtubule-associated protein-like 2; crystal structure of the trimerization domain of eml2
c4wbqA_ rna binding protein Chain: A: qde-2-interacting protein; crystal structure of the exonuclease domain of qip (qde-2 interacting2 protein) solved by native-sad phasing.
c4ohtB_ oxidoreductase Chain: B: succinate-semialdehyde dehydrogenase; crystal structure of succinic semialdehyde dehydrogenase from2 streptococcus pyogenes in complex with nadp+ as the cofactor
c4rndB_ hydrolase Chain: B: v-type proton atpase subunit f; crystal structure of the subunit df-assembly of the eukaryotic v-2 atpase.
c4u2nA_ transcription Chain: A: zinc finger and btb domain-containing protein 17,nucleus crystal structure of a complex of the miz1- and nac1 poz domains.
c4rh7A_ motor protein Chain: A: green fluorescent protein/cytoplasmic dynein 2 heavy chain crystal structure of human cytoplasmic dynein 2 motor domain in2 complex with adp.vi
c4cgbA_ cell cycle Chain: A: echinoderm microtubule-associated protein-like 2; crystal structure of the trimerization domain of eml2
c4uweC_ signaling protein Chain: C: ryanodine receptor 1; structure of the ryanodine receptor at resolution of 8.5 a2 in partially open state
c4uwaA_ signaling protein Chain: A: ryanodine receptor 1; structure of the ryanodine receptor at resolution of2 6.1 a in closed state
c4lurA_ transport protein Chain: A: interphotoreceptor retinoid-binding protein(irbp); crystal structure of zebrafish interphotoreceptor retinoid-binding2 protein (irbp) module 1
c4rtfD_ chaperone Chain: D: chaperone protein dnak; crystal structure of molecular chaperone dnak from mycobacterium2 tuberculosis h37rv
c2mvcA_ hormone Chain: A: insulin a chain; solution structure of human insulin at ph 1.9
c4cgcA_ cell cycle Chain: A: echinoderm microtubule-associated protein-like 4; crystal structure of the trimerization domain of human eml4
c4nurB_ hydrolase Chain: B: psdsa; crystal structure of thermostable alkylsulfatase sdsap from2 pseudomonas sp. s9
c4q0mA_ hydrolase Chain: A: l-asparaginase; crystal structure of pyrococcus furiosus l-asparaginase
c4uweB_ signaling protein Chain: B: ryanodine receptor 1; structure of the ryanodine receptor at resolution of 8.5 a2 in partially open state
c4pk1A_ protein binding Chain: A: chimera protein of outer membrane protein assembly factors structure of bamb fused to a bama potra domain fragment
c4uwaB_ signaling protein Chain: B: ryanodine receptor 1; structure of the ryanodine receptor at resolution of2 6.1 a in closed state
c2mviA_ antimicrobial protein Chain: A: bacteriocin plantarican asm1; structure of the s-glycosylated bacteriocin asm1
c4nutB_ rna binding protein Chain: B: ribosome assembly 1 protein; crystal structure of the complex between snu13p and the pep domain of2 rsa1
c2mc0A_ transcription activator/antibiotic Chain: A: hth-type transcriptional activator tipa; structural basis of a thiopeptide antibiotic multidrug resistance2 system from streptomyces lividans:nosiheptide in complex with tipas
c4wsfA_ signaling protein Chain: A: serine/threonine-protein phosphatase 4 regulatory subunit falafel evh1 domain bound to cenp-c fim
c2mv6A_ membrane protein Chain: A: erythropoietin receptor; solution structure of the transmembrane domain and the juxta-membrane2 domain of the erythropoietin receptor in micelles
c4rhoA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (bpsl2088) from2 burkholderia pseudomallei k96243 at 2.25 a resolution
c4rohA_ ligase Chain: A: e3 ubiquitin-protein ligase itchy homolog; crystal structure of tandem ww domains of itch in complex with txnip2 peptide
c4r0bA_ lipid binding protein Chain: A: glycodelin; structure of dimeric human glycodelin
c4x23X_ structural protein/dna Chain: X: cenp-c; crystal structure of cenp-c in complex with the nucleosome core2 particle
c4uweA_ signaling protein Chain: A: ryanodine receptor 1; structure of the ryanodine receptor at resolution of 8.5 a2 in partially open state
c4moaA_ toxin Chain: A: pesticidal crystal protein cry4ba; crystal structure of cry4ba-r203q toxin
c4uwaC_ signaling protein Chain: C: ryanodine receptor 1; structure of the ryanodine receptor at resolution of2 6.1 a in closed state


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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