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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2014 Mar 01

Fold library idPDB HeaderMoleculeTitle
c4cnmA_ cell adhesion Chain: A: trophoblast glycoprotein; crystal structure of human 5t4 (wnt-activated inhibitory2 factor 1, trophoblast glycoprotein)
c4ltyD_ hydrolase Chain: D: exonuclease subunit sbcd; crystal structure of e.coli sbcd at 1.8 a resolution
c4mdvB_ metal binding protein Chain: B: annexin; crystal structure of calcium-bound annexin (sm)1
c4nscD_ calcium binding protein Chain: D: calcium uptake protein 1, mitochondrial; crystal structure of cbara1 in the apo-form
c4ke2C_ antifreeze protein Chain: C: type i hyperactive antifreeze protein; crystal structure of the hyperactive type i antifreeze from winter2 flounder
c4jclA_ transferase Chain: A: cyclomaltodextrin glucanotransferase; crystal structure of alpha-cgt from paenibacillus macerans at 1.72 angstrom resolution
c4nx3D_ immune system/viral protein Chain: D: hcv e2; structure of the core ectodomain of the hepatitis c virus envelope2 glycoprotein 2
c4jmkA_ hydrolase Chain: A: dual specificity protein phosphatase 8; structure of dusp8
c4oojB_ unknown function Chain: B: sidc, interaptin; crystal structure of the n-terminal domain of the legionella2 pneumophila protein sidc at 2.4a resolution
c4isyB_ transferase Chain: B: cysteine desulfurase; crystal structure of iscs from mycobacterium tuberculosis
c1vw2H_ toxin Chain: H: tcda1; crystal structure of tcda1
c4cl5B_ transport protein Chain: B: nitrate transporter 1.1; crystal structure of the nitrate transporter nrt1.1 from2 arabidopsis thaliana in complex with nitrate.
c4lzjD_ lyase/lyase inhibitor Chain: D: n-acetylmuramic acid 6-phosphate etherase; crystal structure of murq from h.influenzae with bound inhibitor
c4i1tA_ viral protein Chain: A: rna-directed rna polymerase l; crystal structure of the cap-snatching endonuclease from pichinde2 virus
c4o9xA_ toxin Chain: A: tcdb2, tccc3; crystal structure of tcdb2-tccc3
c4ol9A_ oxidoreductase Chain: A: putative 2-dehydropantoate 2-reductase; crystal structure of putative 2-dehydropantoate 2-reductase pane from2 mycobacterium tuberculosis complexed with nadp and oxamate
c4ke2A_ antifreeze protein Chain: A: type i hyperactive antifreeze protein; crystal structure of the hyperactive type i antifreeze from winter2 flounder
c2m5yA_ unknown function Chain: A: putative tuberculin related peptide; solution structure of the c-terminal domain of rv0431
c3wmxC_ oxidoreductase Chain: C: nad dependent epimerase/dehydratase; gale-like l-threonine dehydrogenase from cupriavidus necator (holo2 form)
c4ohsB_ fluorescent protein Chain: B: far-red fluorescent protein aq143; the structure of a far-red fluorescent protein, aq143
c4nqaI_ transcription regulator/dna Chain: I: liver x nuclear receptor beta; crystal structure of liganded hrxr-alpha/hlxr-beta heterodimer on dna
c4n6jB_ signaling protein Chain: B: striatin-3; crystal structure of human striatin-3 coiled coil domain
c4nb2B_ transferase Chain: B: metallothiol transferase fosb; crystal structure of fosb from staphylococcus aureus at 1.89 angstrom2 resolution - apo structure
c3wmwB_ oxidoreductase Chain: B: nad dependent epimerase/dehydratase; gale-like l-threonine dehydrogenase from cupriavidus necator (apo2 form)
c4nn2B_ transcription Chain: B: phd finger protein 6; protein crystal structure of human borjeson-forssman-lehmann syndrome2 associated protein phf6
c4o2tB_ structural genomics, unknown function Chain: B: uncharacterized protein; crystal structure of a hypothetical protein (bdi_1692) from2 parabacteroides distasonis atcc 8503 at 2.40 a resolution
c4oh0A_ hydrolase Chain: A: beta-lactamase oxa-58; crystal structure of oxa-58 carbapenemase
c4ki9A_ hydrolase Chain: A: dual specificity protein phosphatase 12; crystal structure of the catalytic domain of human dusp12 at 2.0 a2 resolution
c4lziA_ hydrolase inhibitor Chain: A: multicystatin; characterization of solanum tuberosum multicystatin and significance2 of core domains
c4n6jA_ signaling protein Chain: A: striatin-3; crystal structure of human striatin-3 coiled coil domain
c4oh7B_ transferase Chain: B: ornithine carbamoyltransferase; crystal structure of ornithine carbamoyltransferase from brucella2 melitensis
c4ke2B_ antifreeze protein Chain: B: type i hyperactive antifreeze protein; crystal structure of the hyperactive type i antifreeze from winter2 flounder
c4ln0C_ transcription Chain: C: transcription cofactor vestigial-like protein 4; crystal structure of the vgll4-tead4 complex
c4onzA_ hydrolase Chain: A: putative glycoside hydrolase; crystal structure of a putative glycoside hydrolase (bacova_02161)2 from bacteroides ovatus atcc 8483 at 1.85 a resolution
c4nubA_ oxidoreductase Chain: A: 50s ribosomal protein l16 arginine hydroxylase; crystal structure of escherichia coli ribosomal oxygenase ycfd
c4jcmA_ transferase Chain: A: cyclodextrin glucanotransferase; crystal structure of gamma-cgtase from alkalophilic bacillus clarkii2 at 1.65 angstrom resolution


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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