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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Nov 30

Fold library idPDB HeaderMoleculeTitle
c4lb1E_ antimicrobial protein Chain: E: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) y16a/f28a mutant
c4i2nC_ hydrolase Chain: C: intracellular protease/amidase; crystal structure of 31kd heat shock protein, vchsp31 from vibrio2 cholerae
c4mqtB_ signaling protein Chain: B: nanobody 9-8; structure of active human m2 muscarinic acetylcholine receptor bound2 to the agonist iperoxo and allosteric modulator ly2119620
c4bl9D_ signaling protein Chain: D: maltose-binding periplasmic protein, suppressor of fused crystal structure of full-length human suppressor of fused (2 sufu) mutant lacking a regulatory subdomain (crystal form i)
c4lb1A_ antimicrobial protein Chain: A: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) y16a/f28a mutant
c4j3pA_ oxidoreductase Chain: A: catechol oxidase; crystal structure of full-length catechol oxidase from aspergillus2 oryzae
c4kg1A_ lyase Chain: A: diguanylate cyclase; cgmp-responsive diguanylate cyclase
c4n21E_ viral protein Chain: E: gp2 ectodomain; crystal structure of the gp2 core domain from the california academy2 of science virus
c4bwvB_ oxidoreductase Chain: B: phosphoadenosine-phosphosulphate reductase; structure of adenosine 5-prime-phosphosulfate reductase apr-b2 from physcomitrella patens
c4ijrA_ oxidoreductase Chain: A: d-arabinose dehydrogenase [nad(p)+] heavy chain; crystal structure of saccharomyces cerevisiae arabinose dehydrogenase2 ara1 complexed with nadph
c4i3wC_ oxidoreductase Chain: C: aldehyde dehydrogenase (nad+); structure of phosphonoacetaldehyde dehydrogenase in complex with2 gylceraldehyde-3-phosphate and cofactor nad+
c4n2xF_ hydrolase Chain: F: dl-2-haloacid dehalogenase; crystal structure of dl-2-haloacid dehalogenase
c4irnF_ oxidoreductase Chain: F: prolyl-acp dehydrogenase; crystal structure of the prolyl acyl carrier protein oxidase anab
c4m9mA_ viral protein Chain: A: ns2b-ns3 protease; ns2b-ns3 protease from dengue virus at ph 8.5
c4i1xA_ transferase Chain: A: cysteine synthase; crystal structure of cysteine synthase from helicobacter pylori 26695
c4lb7A_ antimicrobial protein Chain: A: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) y16a/i20a/l25a/f28a2 mutant.
c4lfmA_ isomerase Chain: A: galactose-6-phosphate isomerase subunit a; crystal structure of d-galactose-6-phosphate isomerase in complex with2 d-psicose
c4cadF_ protein binding Chain: F: ras and a-factor converting enzyme 1, rce1; mechanism of farnesylated caax protein processing by the2 integral membrane protease rce1
c4bgaB_ transferase Chain: B: predicted molecular chaperone distantly related to nucleotide-bound open form of a putative sugar kinase2 mk0840 from methanopyrus kandleri
c3zihB_ cell cycle Chain: B: cell division protein sepf; bacillus subtilis sepf, c-terminal domain
c4n0pH_ signaling protein Chain: H: pilus assembly protein cpae; crystal structure of a pilus assembly protein cpae (cc_2943) from2 caulobacter crescentus cb15 at 1.75 a resolution (psi community3 target, shapiro)
c4kpnE_ hydrolase Chain: E: nucleoside n-ribohydrolase 1; plant nucleoside hydrolase - ppnrh1 enzyme
c4i1nB_ oxidoreductase/immune system Chain: B: protein ca1697 (nanobody); r104a-ca1697 nanobody binding to the binary dhfr.folate complex
c2mfpA_ metal binding protein Chain: A: ec protein i/ii; solution structure of the circular g-domain analog from the wheat2 metallothionein ec-1
c4lfnD_ isomerase Chain: D: galactose-6-phosphate isomerase subunit b; crystal structure of d-galactose-6-phosphate isomerase in complex with2 d-ribulose
c4lb7D_ antimicrobial protein Chain: D: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) y16a/i20a/l25a/f28a2 mutant.
c4lbfG_ antimicrobial protein Chain: G: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
c4nekD_ isomerase Chain: D: enoyl-coa hydratase/carnithine racemase; putative enoyl-coa hydratase/carnithine racemase from magnetospirillum2 magneticum amb-1
c4n5bF_ viral protein Chain: F: phosphoprotein; crystal structure of the nipah virus phosphoprotein tetramerization2 domain
c4cczA_ transferase Chain: A: methionine synthase; crystal structure of human 5-methyltetrahydrofolate-2 homocysteine methyltransferase, the homocysteine and3 folate binding domains
c3zigA_ cell cycle Chain: A: sepf-like protein; sepf-like protein from pyrococcus furiosus
c4cadC_ protein binding Chain: C: ras and a-factor converting enzyme 1, rce1; mechanism of farnesylated caax protein processing by the2 integral membrane protease rce1
c4cbzB_ signaling protein Chain: B: protein jagged-1; notch ligand, jagged-1, contains an n-terminal c2 domain
c2m0wA_ unknown function Chain: A: alps peptide; solution structure of alps-23 peptide in sds micelles
c4lbfF_ antimicrobial protein Chain: F: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
c4i2uA_ oxidoreductase Chain: A: glutaredoxin; crystal structure of the reduced glutaredoxin from chlorella2 sorokiniana t-89 in complex with glutathione
c4msvA_ immune system Chain: A: tumor necrosis factor ligand superfamily member 6; crystal structure of fasl and dcr3 complex
c2m25A_ hydrolase Chain: A: lysozyme-protease inhibitor protein; nmr structure of a kazal-type serine protease inhibitor from the2 subterranean termite defense gland of coptotermes formosanus shiraki3 soldiers
c3w1yA_ transport protein/ribosomal protein Chain: A: microtubule-associated protein 1a/1b, light chain 3; crystal structure of t brucei atg8.2 in complex with e coli s10
c4kpoB_ hydrolase Chain: B: nucleoside n-ribohydrolase 3; plant nucleoside hydrolase - zmnrh3 enzyme
c4cbzA_ signaling protein Chain: A: protein jagged-1; notch ligand, jagged-1, contains an n-terminal c2 domain
c2m3fA_ rna binding protein Chain: A: ribosome assembly 1 protein; nmr structure of rsa1p238-259 from s. cerevisiae
c4lb1D_ antimicrobial protein Chain: D: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) y16a/f28a mutant
c4nocA_ signaling protein Chain: A: putative signal transduction protein with cbs domains; the crystal structure of a cbs domain-containing protein of unknown2 function from kribbella flavida dsm 17836.
c4lb7B_ antimicrobial protein Chain: B: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) y16a/i20a/l25a/f28a2 mutant.
c4m3qB_ transferase/transferase inhibitor Chain: B: tyrosine-protein kinase mer; crystal structure of the catalytic domain of the proto-oncogene2 tyrosine-protein kinase mer in complex with inhibitor unc1917
c4mqtA_ signaling protein Chain: A: muscarinic acetylcholine receptor m2; structure of active human m2 muscarinic acetylcholine receptor bound2 to the agonist iperoxo and allosteric modulator ly2119620
c4ne4A_ transport protein Chain: A: abc transporter, substrate binding protein crystal structure of abc transporter substrate binding protein prox2 from agrobacterium tumefaciens cocrystalized with btb
c4n71A_ hydrolase Chain: A: predicted hd phosphohydrolase phnz; x-ray crystal structure of 2-amino-1-hydroxyethylphosphonate-bound2 phnz
c4lbbA_ antimicrobial protein Chain: A: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) i20a mutant
c4lbfB_ antimicrobial protein Chain: B: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
c4lbfC_ antimicrobial protein Chain: C: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
c4lb1B_ antimicrobial protein Chain: B: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) y16a/f28a mutant
c4l54A_ oxidoreductase Chain: A: terminal olefin-forming fatty acid decarboxylase; structure of cytochrome p450 olet, ligand-free
c4lbfA_ antimicrobial protein Chain: A: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
c4lbfH_ antimicrobial protein Chain: H: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
c4lbfE_ antimicrobial protein Chain: E: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
c4lbbB_ antimicrobial protein Chain: B: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) i20a mutant
c4lb7E_ antimicrobial protein Chain: E: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) y16a/i20a/l25a/f28a2 mutant.
c4lbfD_ antimicrobial protein Chain: D: neutrophil defensin 1; crystal structure of human alpha-defensin 1 (hnp1) i20a/l25a mutant
c4m8oA_ transferase/dna Chain: A: dna polymerase epsilon catalytic subunit a; ternary complex of dna polymerase epsilon with an incoming datp


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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