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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Apr 20

Fold library idPDB HeaderMoleculeTitle
c4eloD_ metal transport Chain: D: iron abc transporter, periplasmic iron-binding protein; ferric binding protein in apo form 1
c3zm8A_ hydrolase Chain: A: gh26 endo-beta-1,4-mannanase; crystal structure of podospora anserina gh26-cbm352 beta-(1,4)-mannanase
c4j7cA_ transport protein Chain: A: ktr system potassium uptake protein a; ktrab potassium transporter from bacillus subtilis
c4jonA_ structural genomics, unknown function Chain: A: centrosomal protein of 170 kda; crystal structure of a centrosomal protein 170kda, transcript variant2 beta (cep170) from homo sapiens at 2.15 a resolution (psi community3 target, sundstrom)
c4bhcA_ transferase Chain: A: methylated-dna--protein-cysteine methyltransferase; crystal structure of the m. tuberculosis o6-methylguanine2 methyltransferase r37l variant
c4huqT_ hydrolase Chain: T: energy-coupling factor transporter transmembrane protein crystal structure of a transporter
c4jhnD_ unknown function Chain: D: x-linked retinitis pigmentosa gtpase regulator; the crystal structure of the rpgr rcc1-like domain
c4ht7G_ protein binding Chain: G: co2 concentrating mechanism protein p; co2 concentrating mechanism protein p, ccmp form 2
c4ej0D_ isomerase Chain: D: adp-l-glycero-d-manno-heptose-6-epimerase; crystal structure of adp-l-glycero-d-manno-heptose-6-epimerase from2 burkholderia thailandensis
c4iu8A_ transport protein Chain: A: nitrite extrusion protein 2; crystal structure of a membrane transporter (selenomethionine2 derivative)
c4h2dB_ oxidoreductase Chain: B: nadph-dependent diflavin oxidoreductase 1; crystal structure of ndor1
c4i0oA_ structural protein Chain: A: protein elys; nucleoporin elys (aa1-494), mus musculus
c4j7cK_ transport protein Chain: K: ktr system potassium uptake protein b; ktrab potassium transporter from bacillus subtilis
c4jylE_ lyase Chain: E: enoyl-coa hydratase; crystal structure of enoyl-coa hydratase from thermoplasma volcanium2 gss1
c4k05B_ structural genomics, unknown function Chain: B: conserved hypothetical exported protein; crystal structure of a hypothetical protein (bf0371) from bacteroides2 fragilis nctc 9343 at 1.65 a resolution
c4j2oD_ isomerase Chain: D: udp-n-acetylglucosamine 4,6-dehydratase/5-epimerase; crystal structure of nadp-bound wbjb from a. baumannii community2 strain d1279779
c4huzA_ oxidoreductase Chain: A: 2,6-dichloro-p-hydroquinone 1,2-dioxygenase; 2,6-dichloro-p-hydroquinone 1,2-dioxygenase
c4idbA_ oxidoreductase Chain: A: ripening-induced protein; structure of the fragaria x ananassa enone oxidoreductase in complex2 with nadp+
c4iu9A_ transport protein Chain: A: nitrite extrusion protein 2; crystal structure of a membrane transporter
c3vx4D_ transport protein Chain: D: putative abc transporter, atp-binding protein coma; crystal structure of the nucleotide-binding domain of s. mutans coma,2 a bifunctional atp-binding cassette transporter involved in the3 quorum-sensing pathway
c4i7zE_ photosynthesis Chain: E: cytochrome b6-f complex subunit 6; crystal structure of cytochrome b6f in dopg, with disordered rieske2 iron-sulfur protein soluble domain
c4imlA_ immune system Chain: A: crossed heavy chain (vh-ckappa); crossfab binding to human angiopoietin 2
c4jpqA_ structural genomics, unknown function Chain: A: uncharacterized protein; crystal structure of a hypothetical protein (bacuni_03838) from2 bacteroides uniformis atcc 8492 at 2.70 a resolution
c4jqtA_ structural genomics, unknown function Chain: A: putative glycosyl hydrolase; crystal structure of a putative glycosyl hydrolase (bt3469) from2 bacteroides thetaiotaomicron vpi-5482 at 2.49 a resolution
c4juuA_ isomerase Chain: A: epimerase; crystal structure of a putative hydroxyproline epimerase from2 xanthomonas campestris (target efi-506516) with bound phosphate and3 unknown ligand
c4hzuB_ hydrolase, transport protein Chain: B: energy-coupling factor transporter atp-binding protein ecfa structure of a bacterial energy-coupling factor transporter
c4huqS_ hydrolase Chain: S: uncharacterized protein; crystal structure of a transporter
c4jb7A_ cell invasion Chain: A: accessory colonization factor acfc; 1.42 angstrom resolution crystal structure of accessory colonization2 factor acfc (acfc) in complex with d-aspartic acid
c4jotA_ lyase Chain: A: enoyl-coa hydratase, putative; crystal structure of enoyl-coa hydrotase from deinococcus radiodurans2 r1
c4k00A_ hydrolase Chain: A: 1,4-dihydroxy-2-naphthoyl-coa hydrolase; crystal structure of slr0204, a 1,4-dihydroxy-2-naphthoyl-coa2 thioesterase from synechocystis
c4em1A_ transcription Chain: A: uncharacterized hth-type transcriptional regulator sar2349; staphylococcus aureus marr native
c4jxpA_ hydrolase Chain: A: alpha-l-iduronidase; crystal structure of human alpha-l-iduronidase, monoclinic form
c4djaA_ lyase Chain: A: photolyase; crystal structure of a prokaryotic (6-4) photolyase phrb from2 agrobacterium tumefaciens with an fe-s cluster and a 6,7-dimethyl-8-3 ribityllumazine antenna chromophore at 1.45a resolution
c4i7zH_ photosynthesis Chain: H: cytochrome b6-f complex subunit 8; crystal structure of cytochrome b6f in dopg, with disordered rieske2 iron-sulfur protein soluble domain
c4alyB_ membrane protein Chain: B: p35 antigen; borrelia burgdorferi outer surface lipoprotein bba64
c4k02A_ hydrolase Chain: A: 1,4-dihydroxy-2-naphthoyl-coa thioesterase; crystal structure of atdhnat1, a 1,4-dihydroxy-2-naphthoyl-coa2 thioesterase from arabidopsis thaliana
c4hzuS_ hydrolase, transport protein Chain: S: predicted membrane protein; structure of a bacterial energy-coupling factor transporter
c2m5bB_ apoptosis Chain: B: human_bid_bh3_sahb; the nmr structure of the bid-bak complex
c2m4vA_ transcription Chain: A: putative uncharacterized protein; mycobacterium tuberculosis rna polymerase binding protein a (rbpa) and2 its interactions with sigma factors
c2lmkA_ signaling protein Chain: A: exocrine gland-secreting peptide 1; solution structure of mouse pheromone esp1
c4k15A_ unknown function Chain: A: lmo2686 protein; 2.75 angstrom crystal structure of hypothetical protein lmo2686 from2 listeria monocytogenes egd-e
c4gehB_ protein binding/transferase Chain: B: serine/threonine-protein kinase mst4; crystal structure of mst4 dimerization domain complex with pdcd10
c4bhxA_ dna binding protein Chain: A: paternally-expressed gene 3 protein; crystal structure of the scan domain from human paternally2 expressed gene 3 protein
c4epuB_ signaling protein Chain: B: angiopoietin-1; ang1 fibrinogen-related domain (fred)
c4imlL_ immune system Chain: L: crossed light chain (vl-ch1); crossfab binding to human angiopoietin 2
c4jxkA_ oxidoreductase Chain: A: oxidoreductase; crystal structure of oxidoreductase rop_24000 (target efi-506400) from2 rhodococcus opacus b4
c4jxmA_ rna binding protein Chain: A: u3 small nucleolar rna-interacting protein 2; crystal structure of rrp9 wd40 repeats
c3zizA_ hydrolase Chain: A: gh5 endo-beta-1,4-mannanase; crystal structure of podospora anserina gh5 beta-(1,4)-mannanase
c3j32B_ oxygen transport Chain: B: hemocyanin isoform 1; an asymmetric unit map from electron cryo-microscopy of haliotis2 diversicolor molluscan hemocyanin isoform 1 (hdh1)
c2lrcA_ oxidoreductase Chain: A: probable thioredoxin; structure of thioredoxin 2 from pseudomonas aeruginosa pao1 in its2 reduced form
c3w52A_ hydrolase Chain: A: endonuclease 2; zinc-dependent bifunctional nuclease
c3t33A_ signaling protein receptor Chain: A: g protein coupled receptor; crystal structure of arabidopsis gcr2
c4jqpA_ oxidoreductase Chain: A: 4-hydroxythreonine-4-phosphate dehydrogenase; x-ray crystal structure of a 4-hydroxythreonine-4-phosphate2 dehydrogenase from burkholderia phymatum
c4elnA_ unknown function Chain: A: type iii effector xopai; crystal structure of the type iii effector xopai from xanthomonas2 axonopodis pv. citri
c4huqB_ hydrolase Chain: B: energy-coupling factor transporter atp-binding protein ecfa crystal structure of a transporter


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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