Standard Mode | Switch to Expert Mode | Login to view past jobs Retrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Apr 06

Fold library idPDB HeaderMoleculeTitle
c3zcoA_ transcription Chain: A: regulatory protein sir3; crystal structure of s. cerevisiae sir3 c-terminal domain
c3w1bA_ ligase Chain: A: dna ligase 4; crystal structure of human dna ligase iv-artemis complex (mercury2 derivative)
c4i86A_ transferase Chain: A: cellulose synthase 1; crystal structure of pilz domain of cesa from cellulose synthesizing2 bacterium
c3w26A_ hydrolase Chain: A: glycoside hydrolase family 10; the high-resolution crystal structure of tsxyla, intracellular2 xylanase from /thermoanaerobacterium saccharolyticum jw/sl-ys485/:3 the complex of the e146a mutant with xylotriose
c2yn5B_ membrane protein Chain: B: putative inner membrane protein; structural insight into the giant calcium-binding adhesin siie:2 implications for the adhesion of salmonella enterica to polarized3 epithelial cells
c3zbip_ cell adhesion Chain: P: traf protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c3w3jB_ immune system Chain: B: toll-like receptor 8; crystal structure of human tlr8 in complex with cl097
c4jroC_ oxidoreductase Chain: C: fabg protein; crystal structure of 3-oxoacyl-[acyl-carrier protein]reductase (fabg)2 from listeria monocytogenes in complex with nadp+
c3zbid_ cell adhesion Chain: D: traf protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c3vvpA_ transport protein Chain: A: putative uncharacterized protein; crystal structure of mate in complex with br-nrf
c4gx9A_ transferase Chain: A: dna polymerase iii subunit epsilon, dna polymerase iii crystal structure of a dna polymerase iii alpha-epsilon chimera
c4j05A_ transport protein Chain: A: phosphate transporter; crystal structure of a eukaryotic phosphate transporter
c2ypwB_ membrane protein Chain: B: trao; atomic model for the n-terminus of trao fitted in the full-length2 structure of the bacterial pkm101 type iv secretion system core3 complex
c4jhyA_ structural genomics, unknown function Chain: A: hypothetical protein; crystal structure of a hypothetical protein (bdi_3606) from2 parabacteroides distasonis atcc 8503 at 1.90 a resolution
c4i0wB_ hydrolase Chain: B: protease cspb; structure of the clostridium perfringens cspb protease
c4jgbB_ protein binding Chain: B: putative exported protein; crystal structure of putative exported protein from burkholderia2 pseudomallei
c4i9xB_ apoptosis Chain: B: protein ul141; crystal structure of human cytomegalovirus glycoprotein ul1412 targeting the death receptor trail-r2
c4jm1A_ structural genomics, unknown function Chain: A: hypothetical protein; crystal structure of a hypothetical protein (bdi_0842) from2 parabacteroides distasonis atcc 8503 at 1.40 a resolution
c3vb0D_ oxidoreductase Chain: D: glyoxalase/bleomycin resistance protein/dioxygenase; crystal structure of 2,2',3-trihydroxybiphenyl 1,2-dioxygenase from2 dibenzofuran-degrading sphingomonas wittichii strain rw1
c3w1eA_ motor protein Chain: A: flagella basal-body protein; structure of flgt, a flagellar basal body component protein
c4i0wA_ hydrolase Chain: A: protease cspb; structure of the clostridium perfringens cspb protease
c4jidA_ hydrolase Chain: A: d-alanyl-d-alanine carboxypeptidase family protein; 2.3 angstrom resolution crystal structure of d-alanyl-d-alanine2 carboxypeptidase from bacillus anthracis.
c4josA_ hydrolase Chain: A: adenosylhomocysteine nucleosidase; crystal structure of a putative 5'-methylthioadenosine/s-2 adenosylhomocysteine nucleosidase from francisella philomiragia atcc3 25017 (target nysgrc-029335)
c3vzaD_ cell cycle Chain: D: spc24 protein; crystal structure of the chicken spc24-spc25 globular domain in2 complex with cenp-t peptide
c2m5vA_ immune system Chain: A: nacht, lrr and pyd domains-containing protein 10; three-dimensional structure of human nlrp10/pynod pyrin domain
c3zbiO_ cell adhesion Chain: O: tran protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c3zg6A_ hydrolase/inhibitor Chain: A: nad-dependent protein deacetylase sirtuin-6; the novel de-long chain fatty acid function of human sirt6
c4b5qA_ hydrolase Chain: A: glycoside hydrolase family 61 protein d; the lytic polysaccharide monooxygenase gh61d structure from the2 basidiomycota fungus phanerochaete chrysosporium
c4bg2B_ transferase Chain: B: patf; x-ray crystal structure of patf from prochloron didemni
c2lrfA_ antimicrobial protein Chain: A: anti-lipopolysaccharide factor; nmr structure of the scylla serrata anti lipopolysaccharide factor-242 (ssalf-24) peptide
c4jn8A_ lyase Chain: A: enolase; crystal structure of an enolase (putative galactarate dehydratase,2 target efi-500740) from agrobacterium radiobacter, bound sulfate, no3 metal ion, ordered active site
c3zbiU_ cell adhesion Chain: U: tran protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c4gyoB_ hydrolase Chain: B: response regulator aspartate phosphatase j; crystal structure of rap protein complexed with competence and2 sporulation factor
c3vzaE_ cell cycle Chain: E: centromere protein t; crystal structure of the chicken spc24-spc25 globular domain in2 complex with cenp-t peptide
c3zbqA_ viral protein Chain: A: phikz039; protofilament of tubz from bacteriophage phikz
c4j5tA_ hydrolase Chain: A: mannosyl-oligosaccharide glucosidase; crystal structure of processing alpha-glucosidase i
c3zbiL_ cell adhesion Chain: L: tran protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c3vzaB_ cell cycle Chain: B: uncharacterized protein; crystal structure of the chicken spc24-spc25 globular domain in2 complex with cenp-t peptide
c4i1aA_ hydrolase Chain: A: response regulator aspartate phosphatase i; crystal structure of the apo form of rapi
c4igpA_ structural protein Chain: A: os05g0196500 protein; histone h3 lysine 4 demethylating rice jmj703 apo enzyme
c3zbij_ cell adhesion Chain: J: traf protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c2m13A_ metal binding protein Chain: A: cytoplasmic polyadenylation element-binding protein 1; the zz domain of cytoplasmic polyadenylation element binding protein 12 (cpeb1)
c3vr0D_ protein binding Chain: D: putative uncharacterized protein; crystal structure of pyrococcus furiosus pbab, an archaeal proteasome2 activator
c4jjaA_ structural genomics, unknown function Chain: A: hypothetical protein; crystal structure of a hypothetical protein (bf0379) from bacteroides2 fragilis nctc 9343 at 1.30 a resolution
c3zbia_ cell adhesion Chain: A: traf protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c3zndU_ ribosome Chain: U: 30s ribosomal protein thx; the crystal structure of agmatidine trna-ile2 bound to the2 70s ribosome in the a and p site.
c4ee9A_ hydrolase Chain: A: endoglucanase; crystal structure of the rbcel1 endo-1,4-glucanase
c4ifpC_ immune system Chain: C: maltose-binding periplasmic protein, nacht, lrr and pyd x-ray crystal structure of human nlrp1 card domain
c4hhxA_ membrane protein Chain: A: toxin coregulated pilus biosynthesis protein e; structure of cytoplasmic domain of tcpe from vibrio cholerae
c3zbig_ cell adhesion Chain: G: traf protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c3j377_ ribosome Chain: 7: 50s ribosomal protein l34; tetracycline resistance protein tet(o) bound to the ribosome
c4hynA_ signaling protein Chain: A: chec, inhibitor of mcp methylation / flin fusion protein; x-ray crystal structure of thermotoga maritima fliy
c2lsaA_ antimicrobial protein Chain: A: magainin-2; magainin
c2m3vA_ hydrolase Chain: A: putative uncharacterized protein; solution structure of tyrosine phosphatase related to biofilm2 formation a (tpba) from pseudomonas aeruginosa
c3zbiF_ cell adhesion Chain: F: tran protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c4jrfA_ cell adhesion Chain: A: putative cell adhesion protein; crystal structure of a putative cell adhesion protein (bacova_01548)2 from bacteroides ovatus atcc 8483 at 1.98 a resolution (psi community3 target, nakayama)
c4jnqA_ oxidoreductase Chain: A: thioredoxin reductase; crystal structure of a thioredoxin reductase from brucella melitensis
c4jglA_ structural genomics, unknown function Chain: A: hypothetical protein; crystal structure of a hypothetical protein (bacegg_01519) from2 bacteroides eggerthii dsm 20697 at 1.25 a resolution
c3zh9B_ hydrolase Chain: B: delta; bacillus subtilis dna clamp loader delta protein (yqen)
c2ls9A_ antimicrobial protein Chain: A: pleurocidin; pleurocidin-nh2
c4b8fU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of 70s ribosome with both cognate trnas in the e2 and p sites representing an authentic elongation complex
c4j2lC_ transcription regulator Chain: C: protein capicua homolog; crystal structure of axh domain complexed with capicua
c4is2A_ oxidoreductase Chain: A: bile acid 3-alpha hydroxysteroid dehydrogenase; crystal structure of the apo form of a 3alpha-hydroxysteroid2 dehydrogenase (baia2) associated with secondary bile acid synthesis3 from clostridium scindens vpi12708 at 1.90 a resolution
c3zbiR_ cell adhesion Chain: R: tran protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c4b8hU_ ribosome Chain: U: 30s ribosomal protein thx; crystal structure of 70s ribosome with both cognate trnas in the e2 and p sites representing an authentic elongation complex
c2yn0A_ transcription Chain: A: transcription factor tau 55 kda subunit; tau55 histidine phosphatase domain
c4il7A_ viral protein Chain: A: putative uncharacterized protein; crystal structure of a223 c-terminal domain, a structural protein from2 sulfolobus turreted icosahedral virus (stiv)
c2yn2A_ hydrolase Chain: A: uncharacterized protein ynl108c; huf7p
c4jigA_ oxidoreductase Chain: A: dehydrogenase; crystal structure of a putative dehydrogenase from burkholderia2 cenocepacia
c3zbiC_ cell adhesion Chain: C: tran protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c3zbiX_ cell adhesion Chain: X: tran protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c3zbiI_ cell adhesion Chain: I: tran protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c4j2lD_ transcription regulator Chain: D: protein capicua homolog; crystal structure of axh domain complexed with capicua
c3zn7U_ ribosome Chain: U: 30s ribosomal protein thx; the crystal structure of agmatidine trna-ile2 bound to the2 70s ribosome in the a and p site.
c4i6xA_ isomerase Chain: A: protein disulfide-isomerase a5; crystal structure of non-catalyic domain of protein disulfide2 isomerase-related (pdir) protein
c4i1aB_ hydrolase Chain: B: response regulator aspartate phosphatase i; crystal structure of the apo form of rapi
c3zbim_ cell adhesion Chain: M: traf protein; fitting result in the o-layer of the subnanometer structure of the2 bacterial pkm101 type iv secretion system core complex digested with3 elastase
c3vzaF_ cell cycle Chain: F: centromere protein t; crystal structure of the chicken spc24-spc25 globular domain in2 complex with cenp-t peptide


Phyre is for non-commercial use only

Commercial users please contact Michael Sternberg

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D