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 Protein Homology/analogY Recognition Engine V 2.0


 

New fold library entries added 2013 Feb 04

Fold library idPDB HeaderMoleculeTitle
c4fdhA_ oxidoreductase/oxidoreductase inhibitor Chain: A: cytochrome p450 11b2, mitochondrial; structure of human aldosterone synthase, cyp11b2, in complex with2 fadrozole
c4ernA_ hydrolase Chain: A: tfiih basal transcription factor complex helicase xpb crystal structure of the c-terminal domain of human xpb/ercc-32 excision repair protein at 1.80 a
c4gysA_ hydrolase Chain: A: allophanate hydrolase; granulibacter bethesdensis allophanate hydrolase co-crystallized with2 malonate
c4i99A_ dna binding protein Chain: A: chromosome partition protein smc; crystal structure of the smchead bound to the c-winged helix domain of2 scpa
c4i9yC_ transport protein Chain: C: e3 sumo-protein ligase ranbp2; structure of the c-terminal domain of nup358
c3zf6A_ hydrolase Chain: A: dutpase; phage dutpases control transfer of virulence genes by a2 proto-oncogenic g protein-like mechanism.
c2m09A_ transcription Chain: A: splicing factor 1; structure, phosphorylation and u2af65 binding of the nterminal domain2 of splicing factor 1 during 3 splice site recognition
c4ayqA_ hydrolase Chain: A: mannosyl-oligosaccharide 1,2-alpha-mannosidase; structure of the gh47 processing alpha-1,2-mannosidase from2 caulobacter strain k31 in complex with mannoimidazole
c4aibC_ lyase Chain: C: ornithine decarboxylase; crystal structure of ornithine decarboxylase from entamoeba2 histolytica.
c4heqB_ electron transport Chain: B: flavodoxin; the crystal structure of flavodoxin from desulfovibrio gigas
c4iu1A_ hydrolase/hydrolase inhibitor Chain: A: arginase; crystal structure of leishmania mexicana arginase in complex with2 inhibitor nor-noha
c4iqgB_ oxidoreductase Chain: B: short-chain dehydrogenase/reductase sdr; crystal structure of bpro0239 oxidoreductase from polaromonas sp.2 js666 in nadp bound form
c4afnB_ oxidoreductase Chain: B: 3-oxoacyl-[acyl-carrier-protein] reductase fabg; crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase2 (fabg) from pseudomonas aeruginosa at 2.3a resolution
c4ipaC_ hydrolase Chain: C: putative curved dna-binding protein; structure of a thermophilic arx1
c4f7uP_ splicing Chain: P: icln protein; macromolecular machine 6
c4hxhC_ rna/rna binding protein/hydrolase Chain: C: histone rna hairpin-binding protein; structure of mrna stem-loop, human stem-loop binding protein and2 3'hexo ternary complex
c4i99C_ dna binding protein Chain: C: putative uncharacterized protein; crystal structure of the smchead bound to the c-winged helix domain of2 scpa
c4i98A_ cell cycle Chain: A: segregation and condensation protein a; crystal structure of the complex between scpa(residues 1-160)-2 scpb(residues 1-183)
c4h5bB_ unknown function Chain: B: dr_1245 protein; crystal structure of dr_1245 from deinococcus radiodurans
c2yopB_ apoptosis Chain: B: protein fam3b; long wavelength s-sad structure of fam3b pander
c4gr2A_ chaperone Chain: A: atrbcx1; structure of atrbcx1 from arabidopsis thaliana.
c3zgxZ_ cell cycle Chain: Z: segregation and condensation protein a; crystal structure of the kleisin-n smc interface in2 prokaryotic condensin
c4hvzA_ membrane protein Chain: A: 26 kda periplasmic immunogenic protein; crystal structure of brucella abortus immunogenic bp26 protein
c4i98C_ cell cycle Chain: C: segregation and condensation protein b; crystal structure of the complex between scpa(residues 1-160)-2 scpb(residues 1-183)
c4f2fA_ metal binding protein Chain: A: cation-transporting atpase, e1-e2 family protein; crystal structure of the metal binding domain (mbd) of the2 streptococcus pneumoniae d39 cu(i) exporting p-type atpase copa with3 cu(i)
c2m04B_ apoptosis/protein binding Chain: B: bcl-2-binding component 3; solution structure of bcl-xl in complex with puma bh3 peptide
c4i1sB_ hydrolase/hydrolase inhibitor Chain: B: non-structural protein v; melanoma differentiation associated protein-5 helicase domain complex2 with inhibitor non-structural protein v
c4it1A_ isomerase Chain: A: putative glucarate dehydratase; crystal structure of enolase pfl01_3283 (target efi-502286) from2 pseudomonas fluorescens pf0-1 with bound magnesium, potassium and3 tartrate
c4houB_ rna binding protein Chain: B: interferon-induced protein with tetratricopeptide repeats crystal structure of n-terminal human ifit1
c4ilkB_ oxidoreductase Chain: B: starvation sensing protein rspb; crystal structure of short chain alcohol dehydrogenase (rspb) from e.2 coli cft073 (efi target efi-506413) complexed with cofactor nadh
c2m0gA_ splicing Chain: A: splicing factor 1; structure, phosphorylation and u2af65 binding of the nterminal domain2 of splicing factor 1 during 3 splice site recognition
c3zgxA_ cell cycle Chain: A: chromosome partition protein smc; crystal structure of the kleisin-n smc interface in2 prokaryotic condensin
c4iusA_ transferase Chain: A: gcn5-related n-acetyltransferase; gcn5-related n-acetyltransferase from kribbella flavida.
c4gr6B_ chaperone Chain: B: atrbcx2; crystal structure of atrbcx2 from arabidopsis thaliana
c4geqF_ cell cycle Chain: F: kinetochore-associated protein cnn1; crystal structure of the spc24-spc25/cnn1 binding interface
c4hteA_ hydrolase Chain: A: nicking enzyme; crystal structure of the c-terminal domain of nicking enzyme from2 staphylococcus aureus
c2m3dA_ hydrolase Chain: A: nucleolar rna helicase 2; nmr structure of the guct domain from human dead box polypeptide 21
c4hznA_ transferase Chain: A: bifunctional methylmalonyl-coa:acp the structure of the bifunctional acetyltransferase/decarboxylase lnmk2 from the leinamycin biosynthetic pathway revealing novel activity for3 a double hot dog fold
c4igjB_ isomerase Chain: B: maleylacetoacetate isomerase; crystal structure of maleylacetoacetate isomerase from2 anaeromyxobacter dehalogenans 2cp-1, target efi-507175
c4iohA_ structural genomics, unknown function Chain: A: tll1086 protein; crystal structure of the tll1086 protein from thermosynechococcus2 elongatus, northeast structural genomics consortium target ter258
c4dg5A_ transferase Chain: A: phosphoglycerate kinase; crystal structure of staphylococcal phosphoglycerate kinase
c3vn0D_ membrane protein Chain: D: voltage-gated hydrogen channel 1; crystal structure of a parallel coiled-coil dimerization domain from2 the voltage-gated proton channel (mutation/c245s)
c4ht4A_ hydrolase/dna Chain: A: nicking enzyme; molecular basis of vancomycin resistance transfer in staphylococcus2 aureus
c4f2eA_ metal transport Chain: A: cupa; crystal structure of the streptococcus pneumoniae d39 copper chaperone2 cupa with cu(i)
c3t4rA_ viral protein Chain: A: phosphoprotein; lettuce necrotic yellow virus phosphoprotein c-terminal domain
c4awlA_ transcription/dna Chain: A: nuclear transcription factor y subunit alpha; the nf-y transcription factor is structurally and2 functionally a sequence specific histone
c2lvhA_ metal binding protein Chain: A: putative zinc finger protein orf59a; solution structure of the zinc finger afv1p06 protein from the2 hyperthermophilic archaeal virus afv1
c2ynmC_ oxidoreductase Chain: C: light-independent protochlorophyllide reductase subunit n; structure of the adpxalf3-stabilized transition state of the2 nitrogenase-like dark-operative protochlorophyllide oxidoreductase3 complex from prochlorococcus marinus with its substrate4 protochlorophyllide a
c4g54A_ peptidoglycan-binding protein Chain: A: general secretion pathway protein; crystal structure of a periplasmic domain of the epsab fusion protein2 of the vibrio vulnificus type ii secretion system
c3w2zA_ signaling protein Chain: A: methyl-accepting chemotaxis protein; crystal structure of the cyanobacterial protein
c3umuA_ hydrolase Chain: A: histidinol-phosphatase; crystal structure of l-histidinol phosphate phosphatase (hisk) from2 lactococcus lactis subsp. lactis il1403 complexed with zn, phosphate3 and l-histidinol
c2ynmD_ oxidoreductase Chain: D: light-independent protochlorophyllide reductase subunit b; structure of the adpxalf3-stabilized transition state of the2 nitrogenase-like dark-operative protochlorophyllide oxidoreductase3 complex from prochlorococcus marinus with its substrate4 protochlorophyllide a
c4fwiB_ transport protein Chain: B: abc-type dipeptide/oligopeptide/nickel transport system, crystal structure of the nucleotide-binding domain of a dipeptide abc2 transporter
c4iijF_ cell cycle Chain: F: tubulin tyrosine ligase, ttl; crystal structure of tubulin-stathmin-ttl-apo complex


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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