Phyre 2 Results for C6Y4B8

Email	l.a.kelley@imperial.ac.uk
Description	C6Y4B8
Date	Sun Jul 8 11:45:07 BST 2012
Unique Job ID	ba076dc4639ed3ce

Summary

Top model

Image coloured by rainbow N → C terminus

Model (left) based on template d1ng6a_

Top template information

Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/YqeY domain

Confidence and coverage

Confidence:

100.0%

Coverage:

78%

96 residues ( 78% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.

3D viewing

Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M Y N T Y A I I V H V S K L R N S H L F A N A S A I P N L Q A V I R K K L L D S M K S R Q K D V A S T L K V F L S E I E

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ?
? ? ?
? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence Y A N K S S K P V T T D L D V L R V L K K N I K K R K Q A I E Q F R K A E R L D L A E K E E S Q I Q T L R Q F L P E H A

Secondary structure

SS confidence

Disorder
? ? ? ? ? ?
? ? ?
?
?

Disorder confidence

. . .

Sequence S N I

Secondary structure

SS confidence

Disorder ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered

Alpha helix

Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank	Aligned region

PDB 1ng6 chain A

Region: 27 - 122
Aligned: 96
Modelled: 96
Confidence: 100.0%
Identity: 27%
Fold: GatB/YqeY motif
Superfamily: GatB/YqeY motif
Family: GatB/YqeY domain

Phyre2

PDB 1t6u chain A

Region: 7 - 64
Aligned: 58
Modelled: 58
Confidence: 46.0%
Identity: 19%
Fold: Four-helical up-and-down bundle
Superfamily: Nickel-containing superoxide dismutase, NiSOD
Family: Nickel-containing superoxide dismutase, NiSOD

Phyre2

PDB 2d7d chain B

Region: 28 - 60
Aligned: 33
Modelled: 33
Confidence: 45.7%
Identity: 15%
PDB header:hydrolase/dna
Chain: B: PDB Molecule:40-mer from uvrabc system protein b;
PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb

Phyre2

PDB 1q0g chain A

Region: 7 - 64
Aligned: 58
Modelled: 58
Confidence: 42.6%
Identity: 14%
Fold: Four-helical up-and-down bundle
Superfamily: Nickel-containing superoxide dismutase, NiSOD
Family: Nickel-containing superoxide dismutase, NiSOD

Phyre2

PDB 3bnw chain A

Region: 1 - 53
Aligned: 50
Modelled: 53
Confidence: 22.9%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:riboflavin kinase, putative;
PDBTitle: crystal structure of riboflavin kinase from trypanosoma brucei

Phyre2

PDB 2owy chain B

Region: 77 - 121
Aligned: 44
Modelled: 45
Confidence: 20.7%
Identity: 16%
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination-associated protein rdgc;
PDBTitle: the recombination-associated protein rdgc adopts a novel toroidal2 architecture for dna binding

Phyre2

PDB 2x0k chain B

Region: 1 - 42
Aligned: 39
Modelled: 42
Confidence: 18.8%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribf;
PDBTitle: crystal structure of modular fad synthetase from2 corynebacterium ammoniagenes

Phyre2

PDB 1nb9 chain A

Region: 1 - 42
Aligned: 39
Modelled: 42
Confidence: 18.1%
Identity: 21%
Fold: Reductase/isomerase/elongation factor common domain
Superfamily: Riboflavin kinase-like
Family: ATP-dependent riboflavin kinase-like

Phyre2

PDB 1n08 chain A

Region: 1 - 53
Aligned: 50
Modelled: 53
Confidence: 17.8%
Identity: 16%
Fold: Reductase/isomerase/elongation factor common domain
Superfamily: Riboflavin kinase-like
Family: ATP-dependent riboflavin kinase-like

Phyre2

PDB 2owl chain A

Region: 77 - 121
Aligned: 44
Modelled: 44
Confidence: 17.6%
Identity: 25%
PDB header:recombination
Chain: A: PDB Molecule:recombination-associated protein rdgc;
PDBTitle: crystal structure of e. coli rdgc

Phyre2

PDB 2fna chain A domain 1

Region: 57 - 84
Aligned: 28
Modelled: 28
Confidence: 15.1%
Identity: 18%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: Helicase DNA-binding domain

Phyre2

PDB 3tsi chain C

Region: 14 - 43
Aligned: 30
Modelled: 30
Confidence: 14.6%
Identity: 27%
PDB header:viral protein
Chain: C: PDB Molecule:hemagglutinin-neuraminidase;
PDBTitle: structure of the parainfluenza virus 5 (piv5) hemagglutinin-2 neuraminidase (hn) stalk domain

Phyre2

PDB 1q5q chain H

Region: 19 - 88
Aligned: 69
Modelled: 70
Confidence: 11.5%
Identity: 6%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: Proteasome subunits

Phyre2

PDB 1t6z chain B

Region: 1 - 42
Aligned: 39
Modelled: 42
Confidence: 9.0%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:riboflavin kinase/fmn adenylyltransferase;
PDBTitle: crystal structure of riboflavin bound tm379

Phyre2

PDB 2fhg chain C

Region: 19 - 86
Aligned: 67
Modelled: 68
Confidence: 7.6%
Identity: 7%
PDB header:hydrolase
Chain: C: PDB Molecule:proteasome, beta subunit;
PDBTitle: crystal structure of mycobacterial tuberculosis proteasome

Phyre2

PDB 1ykh chain A domain 1

Region: 73 - 95
Aligned: 23
Modelled: 23
Confidence: 7.6%
Identity: 9%
Fold: Mediator hinge subcomplex-like
Superfamily: Mediator hinge subcomplex-like
Family: MED7 hinge region

Phyre2

PDB 2o8k chain A

Region: 55 - 82
Aligned: 28
Modelled: 28
Confidence: 7.5%
Identity: 18%
PDB header:transcription/dna
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element

Phyre2

PDB 1mrz chain A domain 1

Region: 1 - 42
Aligned: 35
Modelled: 42
Confidence: 6.7%
Identity: 14%
Fold: Reductase/isomerase/elongation factor common domain
Superfamily: Riboflavin kinase-like
Family: ATP-dependent riboflavin kinase-like

Phyre2

PDB 1jms chain A domain 1

Region: 12 - 106
Aligned: 91
Modelled: 95
Confidence: 6.6%
Identity: 11%
Fold: SAM domain-like
Superfamily: DNA polymerase beta, N-terminal domain-like
Family: DNA polymerase beta, N-terminal domain-like

Phyre2

PDB 1xi4 chain D

Region: 72 - 102
Aligned: 31
Modelled: 31
Confidence: 6.2%
Identity: 19%
PDB header:endocytosis/exocytosis
Chain: D: PDB Molecule:clathrin heavy chain;
PDBTitle: clathrin d6 coat

Phyre2

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence	M	Y	N	T	Y	A	I	I	V	H	V	S	K	L	R	N	S	H	L	F	A	N	A	S	A	I	P	N	L	Q	A	V	I	R	K	K	L	L	D	S	M	K	S	R	Q	K	D	V	A	S	T	L	K	V	F	L	S	E	I	E
Secondary structure
SS confidence
Disorder	?	?	?	?	?	?	?							?	?	?		?	?	?	?	?	?	?	?	?	?
Disorder confidence

	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence	Y	A	N	K	S	S	K	P	V	T	T	D	L	D	V	L	R	V	L	K	K	N	I	K	K	R	K	Q	A	I	E	Q	F	R	K	A	E	R	L	D	L	A	E	K	E	E	S	Q	I	Q	T	L	R	Q	F	L	P	E	H	A
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?																										?	?	?																				?		?
Disorder confidence

	.	.	.
Sequence	S	N	I
Secondary structure
SS confidence
Disorder	?	?	?
Disorder confidence