Email l.a.kelley@imperial.ac.uk Description C6Y4B7 Date Sun Jul 8 11:45:07 BST 2012 Unique Job ID be80a65b482f9c51

Summary

Top model

Image coloured by rainbow N → C terminus Close Jmol

Model (left) based on template c3ixzB_ Top template information PDB header:hydrolase Chain: B: PDB Molecule:potassium-transporting atpase subunit beta; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride Confidence and coverage Confidence: 11.8% Coverage: 10% 8 residues ( 10% of your sequence) have been modelled with 11.8% confidence by the single highest scoring template. You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library. Please note: You must be registered and logged in to use Phyrealarm. 3D viewing Interactive 3D view in Jmol

Sequence analysis

Secondary structure and disorder prediction

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3ixz chain B Region: 7 - 14 Aligned: 8 Modelled: 8 Confidence: 11.8% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:potassium-transporting atpase subunit beta; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride Phyre2 PDB 1h3g chain A domain 1 Region: 67 - 73 Aligned: 7 Modelled: 4 Confidence: 10.6% Identity: 29% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: E-set domains of sugar-utilizing enzymes Phyre2 PDB 1vkw chain A Region: 70 - 83 Aligned: 14 Modelled: 14 Confidence: 10.3% Identity: 29% Fold: FMN-dependent nitroreductase-like Superfamily: FMN-dependent nitroreductase-like Family: Putative nitroreductase TM1586 Phyre2 PDB 2jn4 chain A Region: 31 - 45 Aligned: 15 Modelled: 15 Confidence: 9.3% Identity: 27% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein fixu, nift; PDBTitle: solution nmr structure of protein rp4601 from rhodopseudomonas2 palustris. northeast structural genomics consortium target rpt2;3 ontario center for structural proteomics target rp4601. Phyre2 PDB 2jn4 chain A domain 1 Region: 31 - 45 Aligned: 15 Modelled: 15 Confidence: 9.3% Identity: 27% Fold: NifT/FixU barrel-like Superfamily: NifT/FixU-like Family: NifT/FixU Phyre2 PDB 1x87 chain A Region: 34 - 50 Aligned: 17 Modelled: 17 Confidence: 7.5% Identity: 29% Fold: Urocanase Superfamily: Urocanase Family: Urocanase Phyre2 PDB 2e45 chain A domain 1 Region: 29 - 43 Aligned: 15 Modelled: 15 Confidence: 6.7% Identity: 13% Fold: WW domain-like Superfamily: WW domain Family: WW domain Phyre2 PDB 1jb0 chain J Region: 71 - 78 Aligned: 8 Modelled: 8 Confidence: 6.5% Identity: 38% Fold: Single transmembrane helix Superfamily: Subunit IX of photosystem I reaction centre, PsaJ Family: Subunit IX of photosystem I reaction centre, PsaJ Phyre2 1 c3ixzB_ 2 d1h3ga1 3 d1vkwa_ 4 c2jn4A_ 5 d2jn4a1 6 d1x87a_ 7 d2e45a1 8 d1jb0j_

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0