Secondary structure and disorder prediction |   |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . |
Sequence |   |
M | V | G | R | Y | R | F | E | F | I | L | I | I | L | I | L | C | A | L | I | T | A | R | F | Y | L | S |
Secondary structure |   |
|
| | | | | | | | | | | | | | | | | | | | | | | | |
|
SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Disorder |   |
? | ? | ? | ? | ? |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| ? | ? |
| ? | ? | ? | ? |
Disorder confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |
Confidence Key |
High(9) |   |
  |
  |
  |
  |
  |
  |
  |
  |
  |
Low (0) |
? | Disordered |
| Alpha helix |
| Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
|
1 |
|
PDB 2voy chain B
Region: 8 - 21 Aligned: 14 Modelled: 14 Confidence: 15.8% Identity: 36% PDB header:hydrolase Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
Phyre2
2 |
|
PDB 1qf8 chain A
Region: 15 - 27 Aligned: 13 Modelled: 12 Confidence: 8.4% Identity: 46% Fold: Rubredoxin-like Superfamily: Casein kinase II beta subunit Family: Casein kinase II beta subunit
Phyre2
3 |
|
PDB 1a1u chain A
Region: 3 - 10 Aligned: 8 Modelled: 8 Confidence: 7.6% Identity: 75% Fold: p53 tetramerization domain Superfamily: p53 tetramerization domain Family: p53 tetramerization domain
Phyre2
4 |
|
PDB 1jwh chain C
Region: 15 - 27 Aligned: 13 Modelled: 13 Confidence: 7.1% Identity: 46% Fold: Rubredoxin-like Superfamily: Casein kinase II beta subunit Family: Casein kinase II beta subunit
Phyre2
5 |
|
PDB 2voy chain E
Region: 10 - 20 Aligned: 11 Modelled: 11 Confidence: 5.6% Identity: 55% PDB header:hydrolase Chain: E: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
Phyre2
|
Detailed template information |   |
Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
If you use the binding site
predictions from 3DLigandSite, please also cite: |
3DLigandSite: predicting ligand-binding sites using similar structures. |
Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
  |
|
|
|