Secondary structure and disorder prediction

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Sequence

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Secondary structure

SS confidence

Disorder

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Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2voy chain B Region: 8 - 21 Aligned: 14 Modelled: 14 Confidence: 15.8% Identity: 36% PDB header:hydrolase Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus Phyre2 PDB 1qf8 chain A Region: 15 - 27 Aligned: 13 Modelled: 12 Confidence: 8.4% Identity: 46% Fold: Rubredoxin-like Superfamily: Casein kinase II beta subunit Family: Casein kinase II beta subunit Phyre2 PDB 1a1u chain A Region: 3 - 10 Aligned: 8 Modelled: 8 Confidence: 7.6% Identity: 75% Fold: p53 tetramerization domain Superfamily: p53 tetramerization domain Family: p53 tetramerization domain Phyre2 PDB 1jwh chain C Region: 15 - 27 Aligned: 13 Modelled: 13 Confidence: 7.1% Identity: 46% Fold: Rubredoxin-like Superfamily: Casein kinase II beta subunit Family: Casein kinase II beta subunit Phyre2 PDB 2voy chain E Region: 10 - 20 Aligned: 11 Modelled: 11 Confidence: 5.6% Identity: 55% PDB header:hydrolase Chain: E: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus Phyre2 1 c2voyB_ 2 d1qf8a_ 3 d1a1ua_ 4 d1jwhc_ 5 c2voyE_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2voyB_ 15.8 36 PDB header:hydrolase Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 2 d1qf8a_ 8.4 46 Fold:Rubredoxin-like Superfamily:Casein kinase II beta subunit Family:Casein kinase II beta subunit 3 d1a1ua_ 7.6 75 Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain 4 d1jwhc_ 7.1 46 Fold:Rubredoxin-like Superfamily:Casein kinase II beta subunit Family:Casein kinase II beta subunit 5 c2voyE_ 5.6 55 PDB header:hydrolase Chain: E: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0