Secondary structure and disorder prediction

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10

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Sequence

M

N

N

S

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K

F

C

F

S

R

F

R

T

G

N

Secondary structure

SS confidence

Disorder

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Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3pp4 chain P Region: 4 - 10 Aligned: 7 Modelled: 7 Confidence: 10.8% Identity: 57% PDB header:immune system Chain: P: PDB Molecule:b-lymphocyte antigen cd20; PDBTitle: epitope characterization and crystal structure of ga101 provide2 insights into the molecular basis for the type i / type ii3 distinction of anti- cd20 antibodies Phyre2 PDB 2osl chain Q Region: 4 - 10 Aligned: 7 Modelled: 7 Confidence: 9.6% Identity: 57% PDB header:immune system Chain: Q: PDB Molecule:b-lymphocyte antigen cd20; PDBTitle: crystal structure of rituximab fab in complex with an2 epitope peptide Phyre2 1 c3pp4P_ 2 c2oslQ_

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3pp4P_ 10.8 57 PDB header:immune system Chain: P: PDB Molecule:b-lymphocyte antigen cd20; PDBTitle: epitope characterization and crystal structure of ga101 provide2 insights into the molecular basis for the type i / type ii3 distinction of anti- cd20 antibodies 2 c2oslQ_ 9.6 57 PDB header:immune system Chain: Q: PDB Molecule:b-lymphocyte antigen cd20; PDBTitle: crystal structure of rituximab fab in complex with an2 epitope peptide

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0