3DLigandSite - Jmol examples

Structural Bioinformatics Group

Division of Molecular Biosciences
Faculty of Natural Sciences

3DLigandSite -Ligand binding site prediction Server

Examples of predictions using the Jmol applet The panel to the right of the Jmol applet on the 3DLigandSite results page enables the user to modify the protein displayed in the applet. Below are some example of different views of the results for the three CASP8 targets which have been used as examples on the Examples page. A description of the settings used is given for each image.
T0396 - All residues set to 100% spacefill in protein and heterogens.	T0396 - predicted binding residue set to wireframe 100 and heterogens set to spacefill 100%
T0396 - Heterogens set to wireframe 100. Protein set to cartoon.	T0406 - heterogens set to spacefill 100 and predicted binding site residues to wireframe 100.
T0406 - heterogens and predicted binding site residues set to wireframe 100.	T0453 - heterogens and predicted binding site residues set to spacefill 100%.
T0453 - whole protein and heterogens set to spacefill 100.	T0453 - predicted binding site residues set to wireframe 100 and heterogens to spacefll 100%.
T0453 - protein and heterogens to wireframe 100.

© Structural Bioinformatics Group, Imperial College, London

Mark Wass