JSmol is an HTML5-only version of Jmol. For a zip file containing all the files in this directory, see http://chemapps.stolaf.edu/jmol/jsmol.zip. This page demonstrates HTML5-only and a compressed JavaScript library. See test2.htm for a version that can use the signed Jmol applet, the unsigned Jmol applet with server-side help, or JSmol, using HTML5 with or without WebGL and the uncompressed libraries. Credits: WebGL interface written by Takanori Nakane. Java2Script written by Zhou Renjian, et al. Jzlib written by Atsuhiko Yamanaka. Jmol code conversion to JavaScript by Bob Hanson.
console image display faster sharper info show clear hide spacefill wire ball&stick cartoons fancy not flat color atomno color cpk color structure isosurface vdw off mep translucent opaque labels on off echo larger smaller | Try various buttons. If anything doesn't work please let me know. Enter "!" and a command into the search box and press ENTER or open the applet console to execute a script command.
keyword searches =caffeine? (RCSB) =1blu? (RCSB) =1crn? (RCSB) | this-domain calls make a nanotube minimize drag-minimize !quit PyMOL session - dna estron.cml vasp.xml water.xodydata thread test pause resume !quit !exit moveto delay/hover animation spin/vibration mo homo SQUARED load data/1hxw.png (image) load data/square_planar.spartan load data/water.xyz.gz pmesh "data/sage.pmesh" load data/caffeine.mol isosurface "caffeine.jvxl" load data/1crn.pdb load data/k04041.cif {1 1 1} load data/cl2o.gamess (load +) mo homo mo lumo mesh fill image x 0.5 x 1.0 x 2.0 off on front mid back cyclflip2.spt !quit | direct database calls(unless MSIE) load $caffeine (from NCI) load =1blu (from RCSB) load =1d66 (from RCSB) load =4tra (from RCSB) load :1983 (PubChem CID) load :aspirin (PubChem name) load :smiles:CC/C=C/CC (PubChem SMILES) load $CC/C=C/CC (NCI SMILES) load :caffeine (PubChem, with mep) load $caffeine (NCI, with MMFF94 mep) load ==HEM (RCSB ligand)