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Job DescriptionALS_intensive
Confidence100.00%DateTue Feb 21 10:39:47 GMT 2012
Rank17Aligned Residues314
% Identity22%Templatec2z80A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  ACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALL
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Template Conservation   

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Template Sequence  SCDRNGIC. . . . . . . . . . . KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS
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TTS...........

STT
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TT

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TTS



TTTTTT
TT


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TTTTT
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   2930...... ...40.........50.........60.........70.........80.........90.......
 
   120.........130.........140.........150.........160.........170.........180.........190.........
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Query Sequence  GLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLREL
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Template Conservation      
  
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Template Sequence  SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF. . . . . . .
Template Known Secondary structure  T
TT



SS

SS

TT
TT
S
TT


SSS
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S
TT
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SSS


TTTT.......
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   98.100.........110.........120.........130.........140.........150.........160.........170
 
   200.........210.........220.........230.........240.........250.........260.........270.........
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Query Sequence  VLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVA
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Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   280.........290.........300.........310.........320.........330.........340.........350.........
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Query Sequence  GLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFL
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Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   360.........370.........380.........390.........400.........410.........420.........430.........
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Query Sequence  GLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLEL
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Template Conservation  .............................................                                   
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL
Template Known Secondary structure  .............................................TT

TT


TTTTTT
S
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   171........180.........190.........200.....
 
   440.........450.........460.........470.........480.........490.........500.........510.........
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Query Sequence  DLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLR
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Template Conservation                                              
  
 
  
 
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Template Sequence  HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSTNSLIKKFTFRNVKITDESLFQV. MKLLNQISGLLELEFSRNQLK
Template Known Secondary structure 
S
STTTTTS
B
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S
B

.T
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SS


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   206...210.........220.........230.........240.........250.........260... ......270.........280....
 
   520.... .....530.........540... ......550.........560.........570.........580.........590....
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Query Sequence  TFTPQ. . . . PPGLERLWLEGNPWDCGCP. LKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPEVVGLDL
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Template Conservation   
    
  
  
  
 
  

  


  
  
   
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Template Sequence  SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE. . . . . . . . . . . . . . . . . . . QGSAKCSGS. . . . GKPV
Template Known Secondary structure 


TTTTTT
TT



SS
B


TTTT...................S

BBTTT....

BG
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   291........300.........310.........320.........330.... .....340... ....
 
   595....600....
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Query Sequence  RDLSEAHFAP
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Template Conservation     .... 
 
Template Sequence  RSI. . . . ICP
Template Known Secondary structure  GG
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   348.350 ...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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