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Job Description | ALS_intensive | Confidence | 98.63% | Date | Tue Feb 21 10:39:47 GMT 2012 |
Rank | 78 | Aligned Residues | 79 |
% Identity | 27% | Template | c1kooD_ |
PDB info |
PDB header:rna binding protein | Chain: D: PDB Molecule:tip associating protein; |
PDBTitle: the crystal structure and mutational analysis of a novel2 rna-binding domain found in the human tap nuclear mrna3 export factor
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Resolution | 3.80 Å |
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Predicted Secondary structure |   |
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Query Sequence |   |
G | G | T | Q | A | L | W | L | D | G | N | N | L | S | S | V | . |
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P | P | A | A | F | Q | N | L | S | S | L | G | F | L | N | L | Q | G | G | Q | L | G | S | L | E | P | Q | A | L | L | G | L | E | N | L | C | H | L | H | L | E | R | N | Q | L | R | S | L | A | L | G | T | . |
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F | A | H |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
P | E | L | L | S | L | N | L | S | N | N | R | L | Y | R | L | D | D | M | S | S | I | V | Q | K | A | P | N | L | K | I | L | N | L | S | G | N | E | L | K | S | E | R | E | L | D | K | I | K | G | L | K | L | E | E | L | W | L | D | G | N | S | L | C | D | T | F | R | D | Q | S | T | Y | I | S | A | I | R | E | R |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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265 | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . |
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145 | . | . | . | . | 150 | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
T | P | A | L | A | S | L | G |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
F | P | K | L | L | R | L | D |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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345 | . | . | . | . | 350 | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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