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Job DescriptionALS_intensive
Confidence100.00%DateTue Feb 21 10:39:47 GMT 2012
Rank11Aligned Residues516
% Identity20%Templatec3a79B_
PDB info PDB header:immune systemChain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   55....60.........70.........80.........90.........100.........110.........120.........130....
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Query Sequence  ELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQL
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Template Conservation     



   
  

  
   
  
 

 
 
  
       
  
  
 

 
 
  
    
  
  
  
 

 
 
Template Sequence  ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL
Template Known Secondary structure 


TTS


S

TTS
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SS





GGGTTT
TT



S




TTTTTT
TT


TTS

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   33......40.........50.........60.........70.........80.........90.........100.........110..
 
   135....140.........150.........160... ......170.........180.........190.........200.........210...
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Query Sequence  RSLALGTFAHTPALASLGLSNNRLSRLED. GLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPAL
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Template Sequence  QNIS. . . CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE
Template Known Secondary structure 

...S


TT
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SB



GGGGG
TT


SB

TTTTGGGTTS
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SSS

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   113... ...120.........130.........140.........150.........160.........170.........180.........
 
   214.....220.........230.........240.........250.........260.........270.........280.........290...
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Query Sequence  FSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLR
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Template Conservation                                                                                  
Template Sequence  SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL
Template Known Secondary structure 


SSS





SS

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   190.........200.........210.........220.........230.........240.........250.........260.........
 
   294.....300.........310.........320.........330.........340.........350.........360.........370...
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Query Sequence  VLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNC
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Template Conservation          
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Template Sequence  FQFFWPRPVEYL. . . . . . . . . NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD
Template Known Secondary structure  TTSS.........
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S
S




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T


SS
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   270.........280. ........290.........300.........310.........320.........330.........340
 
   374.....380.........390.........400.........410.........420.........430.........440..... ....450
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Query Sequence  LRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQ. . . LTHLP
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Template Conservation                
  
                    
  
                      
  
            
Template Sequence  TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY
Template Known Secondary structure  S







SS






SS


TTTTTT

S
SS



SS


BTTTTTT
TT


TTS

BS

S
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   341........350.........360.........370.........380.........390.........400.........410.........420
 
   451........460.........470.........480.........490.........500.........510.........520.... ..
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Query Sequence  HRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTPQ. . . . PP
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Template Sequence  DRTCAWAESILVLNLSSNMLTGSVFRCL. . PPKVKVLDLHNNRIMSIPKD. VTHLQALQELNVASNQLKSVPDGVFDRLT
Template Known Secondary structure  S





TT



SS


GGGGSS
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TT
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TT.TTSS


S

SS





TTSTTT
T
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   421........430.........440........ .450.........460........ .470.........480.........490.......
 
   527..530.........540... ......550.........560.........570.........580.........590.........600....
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Query Sequence  GLERLWLEGNPWDCGCP. LKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPEVVGLDLRDLSEAHFAP
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Template Conservation   
  
 
  
   
 
     
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Template Sequence  SLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVV. . . . . . . . . . . . . . . . . . . RNSAGSVAPDSAKCSGSGKPVRSIICP
Template Known Secondary structure  T




S

B


TTTT...................
SSSSB
SSSS
BSSS


TTT



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   498.500.........510.........520.........530 .........540.........550.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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