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Job DescriptionALS_intensive
Confidence100.00%DateTue Feb 21 10:39:47 GMT 2012
Rank20Aligned Residues370
% Identity19%Templated2omza2
SCOP infoLeucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Internalin LRR domain
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70... ......80.........90.........100.........110.........120.........130.
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Query Sequence  RNLTRLPDGVP. . . . . . . . . . . GGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLER
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Template Conservation             
  
  
   
  
  
 
  
    

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Template Sequence  LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTD. . . LDQVTTLQADRLGIKSID. . GVEYLNNLTQINFSN
Template Known Secondary structure 





SS
S
STT
SSTTS
...TT



SS




T..TGGG
TT



S
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   33......40.........50.........60.........70.... .....80.........90.. .......100.......
 
   132.......140.........150.........160.........170.........180.........190.........200.........210.
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Query Sequence  NQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQP
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Template Conservation 
 
  
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Template Sequence  NQLTDITP. . LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL
Template Known Secondary structure  S




GG..GTT
TT



SS




GGGTT
TT



SS




GGGTT
TT
S


GGGTT
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   108.110..... ....120.........130.........140.........150.........160.........170.........180.....
 
   212.......220.........230.........240.........250.........260.........270.........280.........290.
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Query Sequence  ALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLG
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Template Sequence  TSLQQLSFGNQVTDLKPLANLTTL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
SS



GGGTT
TT
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   186...190.........200.........
 
   292.......300.........310.........320.........330.........340.........350.........360.........370.
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Query Sequence  LRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSG
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Template Conservation  .....................................                                           
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN
Template Known Secondary structure  .....................................


SS




GGGGG
TT
S

SS




GGGGG
TT
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   210.........220.........230.........240.........250..
 
   372.......380.........390.........400.........410.........420.........430.........440.........450.
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Query Sequence  NCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPH
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Template Sequence  LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI
Template Known Secondary structure 



SS




GGGGG
TT
S

SS




GGGTT
TT
S

SS




GGGTT
TT
S

SS

S

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   253......260.........270.........280.........290.........300.........310.........320.........330..
 
   452.......460.........470.........480.........490.........500.........510.........520... ......
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Query Sequence  RLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTP. . QPPGLE
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Template Conservation          
  
 

 
 
  
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Template Sequence  SPISNLKNLTYLTLYFNNISDISP. . VSSLTKLQRLFFANNKVSDVS. . SLANLTNINWLSAGHNQISDLTPLANLTRIT
Template Known Secondary structure  GGGGG
TT
S

SS

S

GG..GGG
TT



SS




G..GGGG
TT



SS




GGGTT
TT
S
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   333......340.........350...... ...360.........370....... ..380.........390.........400........
 
   530......
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Query Sequence  RLWLEGN
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Template Conservation   
 

 
Template Sequence  QLGLNDQ
Template Known Secondary structure 



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   409410.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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