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Job DescriptionALS_intensive
Confidence99.91%DateTue Feb 21 10:39:47 GMT 2012
Rank43Aligned Residues261
% Identity48%Templatec3g06A_
PDB info PDB header:ligaseChain: A: PDB Molecule:ssph2 (leucine-rich repeat protein); PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60.........70.........80.........90.........100.........110.........120.........130......
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Query Sequence  SVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRS
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Template Sequence  VLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLP. . . . ALPPELRTLEVSGNQLTSLP. . . . VLPPGLLELSIFSNPLTH
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   205....210.........220.........230........ .240.........250........ .260.........270......
 
   137..140.........150.........160.........170.........180.........190.........200.........210......
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Query Sequence  LALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSG
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Template Sequence  LPAL. . . . PSGLCKLWIFGNQLTSLPV. . . . LPPGLQELSVSDNQLAS. LPALPSELCKLWAYNNQLTSLPML. . . . . . .
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   277..280 .........290......... 300.........310...... ...320.........330.........340
 
   217..220.........230.........240.........250.........260.........270.........280.........290......
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Query Sequence  LAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLR
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   297..300.........310.........320.........330.........340.........350.........360.........370......
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Query Sequence  LSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRN
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   377..380.........390.........400.........410.........420.........430.........440.........450......
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Query Sequence  LPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQG
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   457..460.........470.........480.........490.........500.........510.........520.........530......
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Query Sequence  LGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTPQPPGLERLWLEGN
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Template Sequence  PSGLQELSVSDNQLASLP. . . . TLPSELYKLWAYNNRLTSLP. . . . ALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN
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   341........350........ .360.........370........ .380.........390.........400.........410..
 
   537..540... ......550.........560.........570.........580.........590
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Query Sequence  PWDCGCP. LKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPEVV
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Template Sequence  RLTSLPMLPSGLLSLSVYRNQLT. RLPESLIHLSSETTVNLEGNPLSERTLQALR
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   413......420.........430..... ....440.........450.........460......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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