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Job DescriptionALS_intensive
Confidence99.72%DateTue Feb 21 10:39:47 GMT 2012
Rank56Aligned Residues265
% Identity20%Templatec1h6uA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:internalin h; PDBTitle: internalin h: crystal structure of fused n-terminal2 domains.
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.........80.........90.........100.........110.........120.........130.........140.......
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Query Sequence  LPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPA
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Template Conservation 


 

       
    
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Template Sequence  FPDPALANAIKIAAGKSNVTDTV. . TQADLDGITTLSAFGTGVTTI. . EGVQYLNNLIGLELKDNQITDLAP. . LKNLTK
Template Known Secondary structure 

STT
SSTTS..
T


TTS




..TTGGG
TT



SS




GG..GTT

S
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   48.50.........60.........70 .........80.........90. ........100.........110..... ....120.
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  LASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSR
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Template Conservation 
                                           
                                   
Template Sequence  ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL
Template Known Secondary structure 



S


S

GGGTT
TT


TTS




GGGTT
TT



SS




GGGGG
TT



SS




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   122.......130.........140.........150.........160.........170.........180.........190.........200.
 
   228.230.........240.........250.........260.........270.........280.........290.........300.......
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Query Sequence  NALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRP
Query Conservation                                                                                  
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Template Conservation    ..............................................................................
Template Sequence  TP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  GG..............................................................................
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   202.
 
   308.310.........320.........330.........340.........350.........360.........370.........380.......
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Query Sequence  RTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGK
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   388.390.........400.........410.........420.........430.........440.........450.........460.......
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Query Sequence  LHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSR
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Template Conservation  ..................................................................      
  
 
  
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LANLSKLTTLKADD
Template Known Secondary structure  ..................................................................GTT
TT



S
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   204.....210.......
 
   468.470.........480.........490.........500.........510.........520.........530.........540.......
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Query Sequence  NRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTPQPPGLERLWLEGNPWDCGCPLKAL
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Template Conservation 
 
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Template Sequence  NKISDISP. . LASLPNLIEVHLKNNQISDVSP. . LANTSNLFIVTLTNQTITNQPVFYNNNLVVPN. . . . . . . . . . . . . .
Template Known Secondary structure  S




GG..GGG
TT


TTS


B
GG..GTT
TT






S
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   218.220..... ....230.........240....... ..250.........260.........270.........
 
   548.550.........560.........570.........580...
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Query Sequence  RDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITC
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Template Conservation  ...                         
  
    
Template Sequence  . . . VVKGPSGAPIAPATISDNGTYASPNLTWNLTSF
Template Known Secondary structure  ...

B
TTS
B


SGGG
TT
SS
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   280.........290.........300.........310..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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