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Job DescriptionALS_intensive
Confidence98.63%DateTue Feb 21 10:39:47 GMT 2012
Rank78Aligned Residues79
% Identity27%Templatec1kooD_
PDB info PDB header:rna binding proteinChain: D: PDB Molecule:tip associating protein; PDBTitle: the crystal structure and mutational analysis of a novel2 rna-binding domain found in the human tap nuclear mrna3 export factor
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   74.....80......... 90.........100.........110.........120.........130.........140. ...
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Query Sequence  GGTQALWLDGNNLSSV. . PPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGT. . . . . . . FAH
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Template Sequence  PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER
Template Known Secondary structure  TT



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GGGGGGTTT
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TTGGGGG

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SSTTTTS
SSTTT
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   265....270.........280.........290.........300.........310.........320.........330.........340....
 
   145....150..
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Query Sequence  TPALASLG
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Template Sequence  FPKLLRLD
Template Known Secondary structure 
TT

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   345....350..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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