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Job DescriptionALS_intensive
Confidence99.76%DateTue Feb 21 10:39:47 GMT 2012
Rank54Aligned Residues262
% Identity24%Templatec2y5qA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:internalin b; PDBTitle: listeria monocytogenes inlb (internalin b) residues 36-392
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.........80.........90.........100.........110.........120.........130.........140.......
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Query Sequence  LPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPA
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Template Conservation 
 
  
       
    
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Template Sequence  FSDDAFAETIKDNLKKKSVTDAVT. . QNELNSIDQIIANNSDIKSVQG. . IQYLPNVTKLFLNGNKLTDIKP. . LANLKN
Template Known Secondary structure  S
STT
S
TTS
..T


TTS

S

TT..GGG
TT


TTS




GG..GTT
TT
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   48.50.........60.........70. ........80.........90... ......100.........110..... ....120.
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  LASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSR
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Template Sequence  LGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLG. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 


TTS



GGGGGG
TT


TTS




GGGGG
TT
S

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   122.......130.........140.........150.........160.........170..
 
   228.230.........240.........250.........260.........270.........280.........290.........300.......
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Query Sequence  NALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRP
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   308.310.........320.........330.........340.........350.........360.........370.........380.......
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Query Sequence  RTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGK
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   388.390.........400.........410.........420.........430.........440.........450.........460.......
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Query Sequence  LHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NNKITDITVLSRLTKLDTLSL
Template Known Secondary structure  ...........................................................SS




GGGGG
TT
S
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   173......180.........190...
 
   468.470.........480.........490.........500.........510.........520... ......530.........540......
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Query Sequence  NRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTP. QPPGLERLWLEGNPWDCGCPLKA
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Template Sequence  EDNQISDIVPLAGLTKLQNLYLSKNHISDLRA. . LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI
Template Known Secondary structure 
SS

S

GGGTT
TT



SS


B
GG..GTT
TT
S








SS



B
TTS
B

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   194.....200.........210.........220..... ....230.........240.........250.........260.........270.
 
   547. .550.........560.........570.........580.....
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Query Sequence  LR. DFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCAS
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Template Conservation 

     
 
 
                           
Template Sequence  ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF
Template Known Secondary structure  SSS
TT


SSS
STT
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   272.......280.........290.........300.........310.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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