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Job DescriptionALS_intensive
Confidence99.96%DateTue Feb 21 10:39:47 GMT 2012
Rank33Aligned Residues359
% Identity13%Templatec3bz5A_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:internalin-j; PDBTitle: functional domain of inlj from listeria monocytogenes2 includes a cysteine ladder
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   74.....80.........90.........100.........110.........120.........130.........140.........150...
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Query Sequence  GGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGL
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Template Conservation    
  



 
 
  
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Template Sequence  ATLTSLDCHNSSITDMTG. . IEKLTGLTKLICTSNNITTLD. . . LSQNTNLTYLACDSNKLTNLD. . . VTPLTKLTYLNC
Template Known Secondary structure  TT



SS




TT..GGG
TT
S

SS

S


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TT
TT
S

SS

S


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TT
TT


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   93......100.........110 .........120.........130. ........140.........150.. .......160....
 
   154.....160.........170.........180.........190.........200.........210.........220.........230...
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Query Sequence  SNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAI
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Template Conservation    
 
          
  
    
    
          
                                        
Template Sequence  DTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLL
Template Known Secondary structure 
SS

S



TT
TT


TTS

S



TT
TT


TT
S






TT
TT



SS






TT
TT
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   165....170.........180.........190.........200.........210.........220.........230.........240....
 
   234.....240.........250.........260.........270.........280.........290.........300.........310...
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Query Sequence  KANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDL
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Template Sequence  NRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVST. . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 


SS

S



TT
TT
S

SS

S



TT
TT
S

SS

S



TT.....................
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   245....250.........260.........270.........280.........290.........300...
 
   314.....320.........330.........340.........350.........360.........370.........380.........390...
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Query Sequence  HFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHL
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Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   394.....400.........410.........420.........430.........440.........450.........460.........470...
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Query Sequence  EGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAEL
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Template Conservation  ............................................   
                    
  
        
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKI
Template Known Secondary structure  ............................................
TT


TT


S



TT
TT


TT
TT
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   304.....310.........320.........330.........
 
   474.....480.........490.........500.........510.........520... ......530.........540.........550
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Query Sequence  PADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTP. QPPGLERLWLEGNPWDCGCPLKALRDF. .
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Template Sequence  KELDVTHNTQLYLLDCQAAGITELD. . . LSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNN
Template Known Secondary structure 




TT
TT


TT


S


...
TT
TT


TT


S



TT
TT
S

SS


B
TTGGGSSGGGT
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   340.........350.........360.... .....370.........380.........390.........400.........410......
 
   551........560.........570.........580........
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Query Sequence  . . . . . . . . . . . . . . ALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPE
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Template Conservation       
    
       
                                 
Template Sequence  NFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN
Template Known Secondary structure  S


B

BTTB

TT
B
TTS


SSSTTTT
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   417..420.........430.........440.........450.........460........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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