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Job DescriptionALS_intensive
Confidence99.91%DateTue Feb 21 10:39:47 GMT 2012
Rank44Aligned Residues428
% Identity16%Templated2bnha_
SCOP infoLeucine-rich repeat, LRR (right-handed beta-alpha superhelix) RNI-like 28-residue LRR
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   78.80.........90 .........100.........110. ........120.........130.........140..... ..
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Query Sequence  ALWLDGNNLSSVP. PAAFQNLSSLGFLNLQGGQLG. . . . SLEPQALLGLENLCHLHLERNQLRSLALGTFAHT. . . . . PA
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Template Conservation   



 
 

       
  
  
  
 

 
 
       
   
  
  
  



 
 
       
   
      
Template Sequence  NLDIHCEQLSDARWTELLPLLQQYEVVRLDDCGLTEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQSPTCK
Template Known Secondary structure  B

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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  LASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSR
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Template Sequence  IQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCEPLASVL
Template Known Secondary structure 


TTS


GGGGGS
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B
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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   228.230.........240.........250.........260.........270.........280.........290.........300.......
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Query Sequence  NALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRP
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Template Sequence  RATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAGIAE
Template Known Secondary structure 
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TTSB
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   162.......170.........180.........190.........200.........210.........220.........230.........240.
 
   308.310.........320.........330.........340.........350.........360.........370.........380.......
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Query Sequence  RTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGK
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Template Sequence  LCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T
TT




TTS



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   242.......250.........260.........270.........280..
 
   388.390.........400.........410.........420.........430.........440.........450.........460.......
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Query Sequence  LHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSR
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Template Conservation  ............                                                            
       
Template Sequence  . . . . . . . . . . . . ELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGD
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   283......290.........300.........310.........320.........330.........340.........350
 
   468.470.........480.........490....... ..500.........510.........520... ......530....
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Query Sequence  NRLAELPADALGPLQRAFWLDVSHNRLEAL. . . . PNSLLAPLGRLRYLSLRNNSLRTFTP. . . . . . . . . QPPGLERLWLE
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Template Sequence  SGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRSLRELDLSNNCVGDPGVLQLLGSLEQPGCALEQLVLY
Template Known Secondary structure  TTSSS




TTS




S


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T
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   351........360.........370.........380.........390.........400.........410.........420.........430
 
   535....540.........550.......
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Query Sequence  GNPWDCGCPLKALRDFALQNPSA
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Template Sequence  DTYWTEEVE. DRLQALEGSKPGL
Template Known Secondary structure  T



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   431........ 440.........450..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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