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Job DescriptionALS_intensive
Confidence99.75%DateTue Feb 21 10:39:47 GMT 2012
Rank55Aligned Residues267
% Identity17%Templatec2uzyA_
PDB info PDB header:signaling protein/receptorChain: A: PDB Molecule:internalin b; PDBTitle: structure of the human receptor tyrosine kinase met in2 complex with the listeria monocytogenes invasion protein3 inlb: low resolution, crystal form ii
Resolution4.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.........80.........90.........100.........110.........120.........130.........140.......
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Query Sequence  LPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPA
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Template Sequence  FSDDAFAETIKDNLKKKSVTDAV. . TQNELNSIDQIIANNSDIKSVQG. . IQYLPNVTKLFLNGNKLTDIKP. . LANLKN
Template Known Secondary structure  S
STT
S
TTS..
T


TTS




TT..GGG
TT



SS




SG..GGG
TT
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   48.50.........60.........70 .........80.........90... ......100.........110..... ....120.
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  LASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSR
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Template Sequence  LGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI. . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 


TTS



GGGGTT
TT


TTS




GGGGG
TT
S

SS

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   122.......130.........140.........150.........160.........170......
 
   228.230.........240.........250.........260.........270.........280.........290.........300.......
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Query Sequence  NALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRP
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   308.310.........320.........330.........340.........350.........360.........370.........380.......
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Query Sequence  RTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGK
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   388.390.........400.........410.........420.........430.........440.........450.........460.......
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Query Sequence  LHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TDITVLSRLTKLDTLSL
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GGGGG
TT
S

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   177..180.........190...
 
   468.470.........480.........490.........500.........510.........520.... .....530.. .......540.....
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Query Sequence  NRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTPQ. PPGLERLW. LEGNPWDCGCPLK
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Template Sequence  EDNQISDIVPLAGLTKLQNLYLSKNHISDLRA. . LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI
Template Known Secondary structure 
SS




GGGGG
TT


TTS




GG..GGG
TT




B

B


B


S




TTS




S
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   194.....200.........210.........220..... ....230.........240.........250.........260.........270.
 
   546...550.........560......... 570.........580.........590
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Query Sequence  ALRDFALQNPSAVPRFVQAICEGD. . . . DCQPPAYTYNNITCASPPEVV
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Template Conservation 
     
    

                          


 
 
   
Template Sequence  ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLK
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SSTT
SS

STTB
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   272.......280.........290.........300.........310.........320
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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