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Job DescriptionALS_intensive
Confidence100.00%DateTue Feb 21 10:39:47 GMT 2012
Rank14Aligned Residues395
% Identity16%Templatec3rg1I_
PDB info PDB header:immune systemChain: I: PDB Molecule:cd180 molecule; PDBTitle: crystal structure of the rp105/md-1 complex
Resolution2.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   42.......50.........60.........70.........80.........90.........100.........110.........120.
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Query Sequence  PAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGL
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Template Conservation    .
 
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Template Sequence  PK. CTEKEGNRT. . . . YNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSH
Template Known Secondary structure 

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TTT....
TTS

SS

TTS
TT



S


S
TTTTSS
TT
S
TTS



TTTTTT
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   26. ..30...... ...40.........50.........60.........70.........80.........90.........100
 
   122.......130.........140.........150.........160.........170.........180.........190.........200.
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Query Sequence  ENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVL
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Template Conservation    
  
 

 
 
                
                                                  
Template Sequence  HQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDF
Template Known Secondary structure  TT


TT




TTTT


S



TTS



GGGS

TT
TT
S
TTS







TT


TT


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   101........110.........120.........130.........140.........150.........160.........170.........180
 
   202.......210.........220.........230.........240.........250.........260.........270.........280.
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Query Sequence  AGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGL
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Template Conservation         .........................................................................
Template Sequence  QNNAIHY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
SS


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   181......
 
   282.......290.........300.........310.........320.........330.........340.........350.........360.
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Query Sequence  LEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGL
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Template Conservation  ...........................................                                     
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ISRKDTNSLEQATNLSLNFNGNDIKGIEPGAFISKIF
Template Known Secondary structure  ...........................................
TTTT
SS
TT




TTTT
STT
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   188.190.........200.........210.........220....
 
   362.......370.........380.........390.........400.........410.........420.........430.........440.
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Query Sequence  TNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDL
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Template Conservation                                                                                  
Template Sequence  QSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELD
Template Known Secondary structure 
TT
S
TTT




TTS



B
GGGGGGGGGS
TT

BSS

GGGGTT
TT

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   225....230.........240.........250.........260.........270.........280.........290.........300....
 
   442.......450.........460.........470.........480.........490..... ....500.........510.........520
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Query Sequence  TSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLE. ALPNSLLAPLGRLRYLSLRNNSLRT
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Template Conservation                    
  
 
  
 
          
  
  
 

 
 
   
       
  
  
 

 
 
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Template Sequence  LTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDI. .
Template Known Secondary structure 
TT


S


S

STTTT


TT


SBGGGG
GGG
TT



S
SS

B

SSTTTT
TT


TTS

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   305....310.........320.........330.........340.........350.........360.........370.........380..
 
   521........530.........540.........550.........560.........570.........580..
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Query Sequence  FTPQPPGLERLWLEGNPWDCGCPLKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNIT
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Template Conservation  .......
  
 

 
    
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Template Sequence  . . . . . . . LQYLNLSYNEPLELLDVAF. . VLNLSHL. . . . . . . . . . . . . . NLQILILSHLDLS
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   398.400.........410...... ...420... ......430......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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