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Job DescriptionALS_intensive
Confidence100.00%DateTue Feb 21 10:39:47 GMT 2012
Rank27Aligned Residues253
% Identity60%Templated1p9ag_
SCOP infoLeucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Ngr ectodomain-like
Resolution1.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50.........60.........70.........80.........90.........100.........110.........120....
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Query Sequence  CVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENL
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Template Conservation 
       
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Template Sequence  CEVSKVASHLE. . VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV. . DGTLPVL
Template Known Secondary structure  S
STT

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TTS

SS

S


TT


TTS

SGGGGTT
TT


TTS



..
S

TT
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   4.....10.... .....20.........30.........40.........50.........60.........70.. .......
 
   125....130.........140.........150.........160.........170.........180.........190.........200....
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Query Sequence  CHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGN
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Template Conservation                            ......................................................
Template Sequence  GTLDLSHNQLQSLPLLGQTLPALTVL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 


SS

SS



TTT
TT

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   80.........90.........100.....
 
   205....210.........220.........230.........240.........250.........260.........270.........280....
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Query Sequence  RLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLED
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   285....290.........300.........310.........320.........330.........340.........350.........360....
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Query Sequence  TFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNV
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   365....370.........380.........390.........400.........410.........420.........430.........440....
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Query Sequence  AVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSN
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Template Conservation  ...........................................................................     
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DVSFN
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SS
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   106...110
 
   445....450.........460.........470.........480.........490.........500.........510.........520....
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Query Sequence  QLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTPQ
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Template Conservation                                         
  
 

 
    
    
  
  
  



 
 
  

  
Template Sequence  RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG
Template Known Secondary structure 





SSTTTT
TT


TTS





TTTTTT
TT


TTS

S


TTTTTT
TT



SS





TT
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   111........120.........130.........140.........150.........160.........170.........180.........190
 
   525....530.........540.........550.........560.........570.........580.........590....
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Query Sequence  . . . PPGLERLWLEGNPWDCGCPLKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPEVVGLDL
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Template Conservation     
  
  
 

 

  


 
  
   
      
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Template Sequence  FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVA. . . . SVQCDNSDKFPVYKY
Template Known Secondary structure  TTTT


S

S

B

SGGGTGGGB



TT


SS



GG....GSBBTT
TT
BGGG
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   191........200.........210.........220.........230.........240.... .....250.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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