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Job DescriptionALS_intensive
Confidence100.00%DateTue Feb 21 10:39:47 GMT 2012
Rank23Aligned Residues292
% Identity21%Templatec2ft3B_
PDB info PDB header:structural protein, signaling proteinChain: B: PDB Molecule:biglycan; PDBTitle: crystal structure of the biglycan dimer core protein
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3940.........50.........60.........70.........80.........90.........100.........110........
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Query Sequence  PACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQAL
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Template Conservation    

  
 
 
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Template Sequence  AMCPFGCHCHLRV. . . . . . VQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF
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   25....30....... ..40.........50.........60.........70.........80.........90........
 
   119120.........130.........140.........150.........160.........170.........180.........190........
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Query Sequence  LGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRE
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Template Sequence  SPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI. . . . . . . . . . . . . . . . . . . . . . . . . .
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   99100.........110.........120.........130.........140.........150..
 
   199200.........210.........220.........230.........240.........250.........260.........270........
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Query Sequence  LVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   279280.........290.........300.........310.........320.........330.........340.........350........
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Query Sequence  AGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   359360.........370.........380.........390.........400.........410.........420.........430........
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Query Sequence  LGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLE
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNE
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   153......160.........170.........180.........190.......
 
   439440.........450.........460.........470.........480.........490.........500.........510........
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Query Sequence  LDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSL
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Template Sequence  LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG. LPDLKLLQVVYLHTNNI
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B

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TTTTTT
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   198.200.........210.........220.........230.........240.........250......... 260.........270......
 
   519520..... ....530.........540 .........550.........560.........570......
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Query Sequence  RTFTPQP. . . . . . . . . . PGLERLWLEGNPWDC. GCPLKALRDFALQNPSAVPRFVQAICEGDDCQPPAY
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Template Sequence  TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ. . . . . . . . . . . . . . . . . . PATFRCVTDRLAIQF
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B

TTSSS
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   277..280.........290.........300.........310.. .......320.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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