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Job DescriptionALS_intensive
Confidence99.89%DateTue Feb 21 10:39:47 GMT 2012
Rank49Aligned Residues135
% Identity30%Templated1xwdc1
SCOP infoLeucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Ngr ectodomain-like
Resolution2.92

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41... .....50.........60.........70.........80.........90.........100.........110........
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Query Sequence  CPAA. CVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQAL.
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Template Sequence  CHHRICHCSNRV. . . . . . FLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF
Template Known Secondary structure 


SS
SS......S
S
SS

S
S
S

SS




TTTTTT
TT

S
TT


SSS
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   18.20......... 30.........40.........50.........60.........70.........80.........90.
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                  
Template Sequence  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE
Template Known Secondary structure  S
TT



TT


TTS

TT

S



S



TTT
BSS
S
TT


TTSSTTSBSS
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   92.......100.........110.........120.........130.........140.........150.........160.........170.
 
   119120.........130.........140.........150.........160.........170.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . LGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGW
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Template Conservation                              
        
    
  
  
  
 

 
 
  
    
  
  
  
 
  
Template Sequence  SVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN
Template Known Secondary structure 


SS



TTTTTT


TT
TT




TTTTTTS


S
TTS





SSS
TT

SSSS
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   172.......180.........190.........200.........210.........220.........230.........240.........250.
 
   180.
Predicted Secondary structure 

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Query Sequence  NS
Query Conservation    
Alig confidence 

Template Conservation 
 
Template Sequence  LK
Template Known Secondary structure  SS
Template Predicted Secondary structure 

Template SS confidence 

   252.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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