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Job DescriptionALS_intensive
Confidence99.96%DateTue Feb 21 10:39:47 GMT 2012
Rank32Aligned Residues160
% Identity36%Templatec3e6jA_
PDB info PDB header:immune systemChain: A: PDB Molecule:variable lymphocyte receptor diversity region; PDBTitle: crystal structure of variable lymphocyte receptor (vlr) rbc36 in2 complex with h-trisaccharide
Resolution1.67 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  ACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALL
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Template Sequence  ACPSQCSCSGTT. . . . . . VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD
Template Known Secondary structure 


TT
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TTTTT
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   21........30.. .......40.........50.........60.........70.........80.........90....
 
   120.........130.........140.........150.........160.........170.........180.........190.........
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Query Sequence  GLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLREL
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Template Sequence  SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG. IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA
Template Known Secondary structure  T
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   95....100.........110.........120.........130......... 140.........150.........160.........170...
 
   200......
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Query Sequence  VLAGNRL
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Template Sequence  YLFGNPW
Template Known Secondary structure 
TTS
B
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   174.....180
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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