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Job DescriptionALS_intensive
Confidence99.94%DateTue Feb 21 10:39:47 GMT 2012
Rank37Aligned Residues240
% Identity23%Templatec3ojaA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   73......80.........90.........100.........110.........120.........130.........140.........150..
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Query Sequence  PGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLG
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Template Sequence  GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD. . LESLSTLRTLD
Template Known Secondary structure  TTS

TTTTTSTTGGG



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GGGGTT
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TT
TT

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   31........40.........50.........60.........70.........80.........90....... ..100........
 
   153......160.........170.........180.........190.........200.........210.........220.........230..
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Query Sequence  LSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRA
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Template Sequence  LNNNYVQELL. . . . . VGPSIETLHAANNNISRVS. . . CSRGQGKKNIYLANNKITMLRDLDEGC. . . . . . . . . . . . . . . .
Template Known Secondary structure 

SS.....
TT



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SS


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SGGGB
GGG................
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   109110........ .120.........130....... ..140.........150.........160....
 
   233......240.........250.........260.........270.........280.........290.........300.........310..
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Query Sequence  IKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   313......320.........330.........340.........350.........360.........370.........380.........390..
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Query Sequence  LHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLH
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   393......400.........410.........420.........430.........440........ .450.........460.........470.
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Query Sequence  LEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTH. LPHRLFQGLGKLEYLLLSRNRLA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY
Template Known Secondary structure  ........................................GSS
TTS


GGGGGGGTTT


TTS


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   165....170.........180.........190.........200....
 
   472.......480.........490.........500.........510.........520.... .....530.........540.
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Query Sequence  ELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTPQ. . . PPGLERLWLEGNPWDCG
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Template Sequence  DVKGQVV. . FAKLKTLDLSSNKLAFMGPE. FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG
Template Known Secondary structure 



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TT



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GG.GGGGTT
S
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B
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   205....210. ........220.........230. ........240.........250.........260.........270....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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