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Job DescriptionALS_intensive
Confidence100.00%DateTue Feb 21 10:39:47 GMT 2012
Rank24Aligned Residues290
% Identity29%Templated1xkua_
SCOP infoLeucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Ngr ectodomain-like
Resolution2.15

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
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Query Sequence  GPACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQA
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Template Sequence  GPVCPFRCQCHLRV. . . . . . VQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA
Template Known Secondary structure 




TT
TT......
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TT



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B
TTTTTT
TT



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B
TTT
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   22.......30..... ....40.........50.........60.........70.........80.........90.....
 
   118.120.........130.........140.........150.........160.........170.........180.........190.......
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Query Sequence  LLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLR
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Template Sequence  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG. . . . . . . . . .
Template Known Secondary structure  TTT
TT



SS

SB

SS

TT



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BB
TT
TT



SS


GGGB
TT..........
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   96...100.........110.........120.........130.........140.........150.........160.....
 
   198.200.........210.........220.........230.........240.........250.........260.........270.......
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Query Sequence  ELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   278.280.........290.........300.........310.........320.........330.........340.........350.......
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Query Sequence  VAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   358.360.........370.........380.........390.........400.........410.........420.........430.......
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Query Sequence  FLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AFQGMKKLSYIRIADTNITTIPQGLPPSLT
Template Known Secondary structure  ..................................................GGGG
TT



SS


S

SS

TT
S
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   166...170.........180.........190.....
 
   438.440.........450.........460.........470.........480.........490.........500.........510.......
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Query Sequence  ELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNS
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Template Sequence  ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG. LADHKYIQVVYLHNNN
Template Known Secondary structure 
TTS



TGGGTT
TT



SS



TTTGGGSTT



SS

SS

TT.TTT
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SS
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   196...200.........210.........220.........230.........240.........250........ .260.........270....
 
   518.520.... .....530.........540 .........550....
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Query Sequence  LRTFTPQ. . . . . . . . . . PPGLERLWLEGNPWDC. GCPLKALRDFALQN
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Template Conservation 

 
    
           
  
 
  
 
    
    
  
    
Template Sequence  ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA
Template Known Secondary structure 




TTSSS
SS

TTS


S

SSSS
GGGS
GGGGTT


GG
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   275....280.........290.........300.........310.........320..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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