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Job DescriptionALS_intensive
Confidence100.00%DateTue Feb 21 10:39:47 GMT 2012
Rank19Aligned Residues433
% Identity13%Templatec2omwA_
PDB info PDB header:cell invasion/cell adhesionChain: A: PDB Molecule:internalin-a; PDBTitle: crystal structure of inla s192n y369s/mec1 complex
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.........80.........90.........100.........110.........120.........130.........140.......
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Query Sequence  LPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPA
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Template Conservation 


  
       
  
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Template Sequence  FTDTALAEKMKTVLGKTNVTD. . TVSQTDLDQVTTLQADRLGIKSID. . GVEYLNNLTQINFSNNQLTDITP. . LKNLTK
Template Known Secondary structure  S
STT
S
TTS..
TT


TTS




T..TGGG
TT



SS




GG..GTT
TT
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   48.50.........60........ .70.........80.........90.. .......100.........110..... ....120.
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  LASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSR
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Template Conservation 
  
 

 
 
           
  
                  
       
                           
Template Sequence  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLK
Template Known Secondary structure 



SS




GGGTT
TT
S

SS




GGGTT
TT
S


GGGTT
TT
SS



G
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   122.......130.........140.........150.........160.........170.........180.........190.........200.
 
   228.230.........240.........250.........260.........270.........280.........290.........300.......
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Query Sequence  NALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRP
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Template Conservation                                                                                  
Template Sequence  PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA
Template Known Secondary structure  GGTT
TT


TTS




GGGGG
TT
S

SS




GGGGG
TT


TTS




GGGGG
TT
S

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   202.......210.........220.........230.........240.........250.........260.........270.........280.
 
   308.310.........320.........330.........340.........350.........360.........370.........380.......
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Query Sequence  RTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGK
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Template Conservation                                               ...................................
Template Sequence  NNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SS




GGGTT
TT
S

SS




GGGTT
TT
S

S...................................
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   282.......290.........300.........310.........320......
 
   388.390.........400.........410.........420.........430.........440.........450.........460.......
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Query Sequence  LHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NQLEDISPISNLKNLTYLTLYF
Template Known Secondary structure  ..........................................................S




GGGGG
TT
S

S
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   327..330.........340........
 
   468.470.........480.........490.........500.........510.........520... ......530.........540...
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Query Sequence  NRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTP. . QPPGLERLWLEGNPWDCGCP. .
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Template Sequence  NNISDISP. . VSSLTKLQRLFFSNNKVSDVSS. . LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNY
Template Known Secondary structure  S




GG..GTT
TT
S

SS




GG..GGG
TT



SS


B
GGGTT
TT








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   349350...... ...360.........370........ .380.........390.........400.........410.........420....
 
   544.....550.........560.........570.........580.........590.........600...
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Query Sequence  . . . LKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPEVVGLDLRDLSEAHFA
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Template Conservation     
  
  
     
       
         
               
           

Template Sequence  KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFS
Template Known Secondary structure 
S


B
TTS
B


SSTT
TT
SS

STT
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   425....430.........440.........450.........460.........470.........480.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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