Return to main results Retrieve Phyre Job Id

Job DescriptionALS_intensive
Confidence99.56%DateTue Feb 21 10:39:47 GMT 2012
Rank62Aligned Residues310
% Identity14%Templated2ca6a1
SCOP infoLeucine-rich repeat, LRR (right-handed beta-alpha superhelix) RNI-like Rna1p (RanGAP1), N-terminal domain
Resolution2.2

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   75....80.........90.........100.........110.. .......120.........130.........140.........150
Predicted Secondary structure 


























....























Query SS confidence 





































. . . .





































Query Sequence  GTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGS. . . . LEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALAS
Query Conservation   
  
 

 
 
  
    
  
  
  
 

 
 
  ....
 
  
  
  
  
 

 
 
  
    
  
  
  
Alig confidence 














.





















....





































Template Conservation   

   

      
.   
     
  
 

 
 
       
   
  
  
  
 

 
            
  
  
Template Sequence  SLKLDAITTEDEKSV. FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ
Template Known Secondary structure 

SS

STT.S
S



TTS
TTTT
TT



S

TTS
GGGS
Template Predicted Secondary structure 







.


























Template SS confidence 















































































   10.........20.... .....30.........40.........50.........60.........70.........80........
 
   151........160.........170.........180.........190.........200.........210.........220.........230
Predicted Secondary structure 













































































Query SS confidence 















































































Query Sequence  LGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNAL
Query Conservation 
 

 
 
             
  
                                                       
Alig confidence 















































































Template Conservation         
                                                                
  
    
Template Sequence  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR
Template Known Secondary structure  TT
TT



S



TTT
TT



SS

T






S
Template Predicted Secondary structure 





































































Template SS confidence 















































































   8990.........100.........110.........120.........130.........140.........150.........160........
 
   231........240.........250.........260.........270.........280.........290.........300.........310
Predicted Secondary structure 















































































Query SS confidence 















































































Query Sequence  RAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTF
Query Conservation                                                                                  
Alig confidence 


































































.............
Template Conservation 
 
                                                                .............
Template Sequence  NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA. . . . . . . . . . . . .
Template Known Secondary structure  S

TGGG
TT



SS


TTGGG
TT



SS

.............
Template Predicted Secondary structure 

























































.............
Template SS confidence 















































































   169170.........180.........190.........200.........210.........220.........230.....
 
   311........320.........330.........340.........350.........360.........370.........380.........390
Predicted Secondary structure 















































































Query SS confidence 















































































Query Sequence  KDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHS
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   391........400.........410.........420.........430.........440.........450.........460.........470
Predicted Secondary structure 















































































Query SS confidence 















































































Query Sequence  LHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRL
Query Conservation                                                                       
  
 
     
Alig confidence  .....................................................


























Template Conservation  .....................................................                           
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LAIALKSWPNLRELGLNDCLLSARGAA
Template Known Secondary structure  .....................................................GGG
TT


TT



Template Predicted Secondary structure  .....................................................


























Template SS confidence 















































































   236...240.........250.........260..
 
   471........480.........490...... ...500.........510.........520.........530.
Predicted Secondary structure 




















.....

























Query SS confidence 

























. . . . .


































Query Sequence  AELPADALGPLQRAFWLDVSHNRLEA. . . . . LPNSLLAPLGRLRYLSLRNNSLRTFTPQPPGLERL
Query Conservation               
  
 

 
 
  .....
    
  
  
  
 

 
 
      
  
  
Alig confidence 

























.....


































Template Conservation               
  
 

 
 
       
   
      
  
 

 
 
      
  
  
Template Sequence  AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV
Template Known Secondary structure  T
SS





SS

B
TT


TTSBS
TTS
Template Predicted Secondary structure 







































Template SS confidence 

































































   263......270.........280.........290.........300.........310.........320........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions