Return to main results Retrieve Phyre Job Id

Job DescriptionALS_intensive
Confidence100.00%DateTue Feb 21 10:39:47 GMT 2012
Rank8Aligned Residues525
% Identity21%Templatec3a79A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60.........70.........80.........90.........100.........110.........120..
Predicted Secondary structure 























































Query SS confidence 















































































Query Sequence  AACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLE
Query Conservation    
 
          
 
    

 

  
   
  
 

 
 
  
    
  
  
  
 

 
 
  
 
  
  
 
Alig confidence 








.....

































































Template Conservation      
    .....  
 
   
  

  
   
  
 

 
 
  
    
  
  
  
 

 
 
  
    
  
 
Template Sequence  ESLSCDASG. . . . . VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG
Template Known Secondary structure 





SSS.....

SS

SSS
S


TT
S

SS



SSTTSS
TT
S
TTS



TTTTTT
T
Template Predicted Secondary structure 





.....















































Template SS confidence 















































































   26...30.... .....40.........50.........60.........70.........80.........90.........100
 
   123......130.........140.........150.........160..... ....170.........180........ .190.........200
Predicted Secondary structure 
































.




















.











Query SS confidence 










































.






















.











Query Sequence  NLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGL. FEGLGSLWDLNLGWNSLAVLPDA. AFRGLGSLRELV
Query Conservation   
  
 

 
 
  
    
  
  
  
 

 
 
       .      
  
             .            
Alig confidence 










































.






















.











Template Conservation   
  
 

 
 
  
       
  
  
 

 
                
  
 
                   
    
Template Sequence  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE
Template Known Secondary structure  T



SS


S

TTSSTT
TT


TT


SSS
SS
SSTT
TT

SSS


SSTTTT

Template Predicted Secondary structure 
































































Template SS confidence 















































































   101........110.........120.........130.........140.........150.........160.........170.........180
 
   201........210.........220.........230.........240.........250.........260.........270....
Predicted Secondary structure 









































































......
Query SS confidence 









































































. . . . . .
Query Sequence  LAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLS. . . . . .
Query Conservation                                                                            ......
Alig confidence 









































































......
Template Conservation                                                       
                          
Template Sequence  IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV
Template Known Secondary structure  TT


TTTTTS


SBGGGTTTTBSS
B
TT





S








SS
Template Predicted Secondary structure 













































































Template SS confidence 















































































   181........190.........200.........210.........220.........230.........240.........250.........260
 
   275....280.........290.........300.........310.........320.........330.........340..
Predicted Secondary structure  ............



































































Query SS confidence  . . . . . . . . . . . .



































































Query Sequence  . . . . . . . . . . . . HNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEV
Query Conservation  ............                                                                    
Alig confidence  ............



































































Template Conservation                                                                               
  
Template Sequence  LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR
Template Known Secondary structure  GGGGGT
TT


S
S
S




TTTT

S
B
TTGGG



GGGTTTTSS

Template Predicted Secondary structure 












































































Template SS confidence 















































































   261........270.........280.........290.........300.........310.........320.........330.........340
 
   343......350.........360.........370.........380.........390.........400.........410.........420..
Predicted Secondary structure 















































































Query SS confidence 















































































Query Sequence  LTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGL
Query Conservation                                                                                  
Alig confidence 















































































Template Conservation 
                    
  
                       
  
                      
     
Template Sequence  ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI
Template Known Secondary structure  SS






TT


TTS


T
TTS
TT


TTS



GGG
TT


Template Predicted Secondary structure 















































































Template SS confidence 















































































   341........350.........360.........370.........380.........390.........400.........410.........420
 
   423. .....430.........440.........450.........460.........470.........480.........490.........500.
Predicted Secondary structure 

.




































































Query SS confidence 

.












































































Query Sequence  VG. IEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSL
Query Conservation    .                                   
  
 
                  
  
 

 
 
  
    
Alig confidence 

.


















































....





















Template Conservation                   
                    
  
 

 
 
     .... 
  
  
 

 
 
  
    
Template Sequence  SRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSL. . . . FLPRLQELYISRNKLKTLPDAS
Template Known Secondary structure 
S






S




TT


TT






TTS
TT
S

SS

S



....

TT



SS

SS


TT
Template Predicted Secondary structure 













































....


















Template SS confidence 















































































   421........430.........440.........450.........460.........470.... .....480.........490......
 
   502.......510.........520.... .....530.........540.........550.........560.........570.......
Predicted Secondary structure 


















....

































Query SS confidence 






















. . . .




















































Query Sequence  LAPLGRLRYLSLRNNSLRTFTPQ. . . . PPGLERLWLEGNPWDCGCPLKALRDFALQNPSAVPRFVQAICEGDDCQPPAYT
Query Conservation 
  
  
  
 

 
 
      ....
  
  
 
  
   
 
 
  
  
 
  
      
  
  
  
  
 
 
Alig confidence 
..



















....


































..................
Template Conservation   ..   
  
 

 
 
          
  
  
 
  

  
 
                 ..................
Template Sequence  L. . FPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE. . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S..
TT



SS

S


SS
TTS
TT



S





TTT
TTTS
..................
Template Predicted Secondary structure 
..




































..................
Template SS confidence 















































































   497 ..500.........510.........520.........530.........540.........550......
 
   578.580.........590.........600....
Predicted Secondary structure 















Query SS confidence 


























Query Sequence  YNNITCASPPEVVGLDLRDLSEAHFAP
Query Conservation   
      
  
  
 
 

  
 
  
Alig confidence 








....






....


Template Conservation       
   ....   
   ....   
Template Sequence  QGSAKCSGS. . . . GKPVRSI. . . . ICP
Template Known Secondary structure 
S

B
TTT....

BTTS
....


Template Predicted Secondary structure 




....



....


Template SS confidence 


























   557..560..... ....570.. ...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions