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Job DescriptionALS______
Confidence100.00%DateThu Feb 9 13:17:35 GMT 2012
Rank22Aligned Residues202
% Identity31%Templatec2v70D_
PDB info PDB header:structural proteinChain: D: PDB Molecule:slit homolog 2 protein n-product; PDBTitle: third lrr domain of human slit2
Resolution3.01 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90... ......100.........110........
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Query Sequence  ACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAA. FQNLSSLGFLNLQGGQLGSLEPQAL
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Template Conservation   

  
 
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Template Sequence  ACPEKCRCEGTT. . . . . . VDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF
Template Known Secondary structure 


TT
TT......

SS

SS

S


TT
S

SS






GGGG
TT



SS



TTTT
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   505....510...... ...520.........530.........540.........550.........560.........570........
 
   119120.........130.........140.........150.........160.........170.........180.........190........
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Query Sequence  LGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRE
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Template Conservation       
  
 
  
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Template Sequence  EGASGVNEILLTSNRLENVQHKMFK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
TT



SS





GGGGT.......................................................
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   579580.........590.........600...
 
   199200.........210.........220.........230.........240.........250.........260.........270........
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Query Sequence  LVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRV
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   279280.........290.........300.........310.........320.........330.........340.........350........
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Query Sequence  AGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAF
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   359360.........370.........380.........390.........400.........410.........420.........430........
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Query Sequence  LGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLE
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   439440.........450.........460.........470.........480.........490.........500.........510........
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Query Sequence  LDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSL
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Template Conservation  .........................................    
  
                    
  
 
  
  
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI
Template Known Secondary structure  .........................................T
SS


TTS



B
TTSSTT
TT
S
TT


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   604.....610.........620.........630.........640..
 
   519520.... .....530.........540.........550.........560.........570.........580.........590....
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Query Sequence  RTFTPQ. . . . PPGLERLWLEGNPWDCGCPLKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPEVVGLDL
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Template Conservation               
  
 
  

  


    
   
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Template Sequence  TTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTG. . . . . . . . . . . . . . . . . . . . NPRCQKPYFLKEIPI
Template Known Secondary structure 

B
TTTTTT
TT



SS

SGGGS

B

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SGGGTTG
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   643......650.........660.........670.........680....... ..690.........700..
 
   595....600.. .
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Query Sequence  RDLSEAHF. A
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Template Conservation    
    
 
Template Sequence  QDVAIQDFTC
Template Known Secondary structure  GGS
GGG


Template Predicted Secondary structure 




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   703......710..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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