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Job DescriptionALS______
Confidence99.98%DateThu Feb 9 13:17:35 GMT 2012
Rank29Aligned Residues251
% Identity45%Templatec1ookG_
PDB info PDB header:hydrolaseChain: G: PDB Molecule:platelet glycoprotein ib alpha chain precursor; PDBTitle: crystal structure of the complex of platelet receptor gpib-alpha and2 human alpha-thrombin
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50.........60.........70.........80.........90.........100.........110.........120....
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Query Sequence  CVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENL
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Template Conservation    
  
    
  
 

 
 
  

  
   
  
 

 
 
  
    
  
  
  
 
  
 
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Template Sequence  PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV. . DGTLPVL
Template Known Secondary structure 
SSTT
TTS

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S


TT
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SGGGGSS
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TT
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   2.......10.........20.........30.........40.........50.........60.........70.. .......
 
   125....130.........140.........150.........160.........170.........180.........190.........200....
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Query Sequence  CHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGN
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Template Conservation                  .                             ..................................
Template Sequence  GTLDLSHNQLQSLPLL. GQTLPALTVLDVSFNRLTSLPLGALRGLG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 


SS

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.TTT
TT



SS

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TTTTTT
T..................................
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   80.........90..... ....100.........110.........120....
 
   205....210.........220.........230.........240.........250.........260.........270.........280....
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Query Sequence  RLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLED
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   285....290.........300.........310.........320.........330.........340.........350.........360....
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Query Sequence  TFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNV
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Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   365....370.........380.........390.........400.........410.........420.........430.........440....
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Query Sequence  AVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   445....450.........460.........470.........480.........490.........500.........510.........520...
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Query Sequence  QLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTP.
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Template Conservation  ..............                         
  
 
  
            
  
  
 

 
 
  

  
Template Sequence  . . . . . . . . . . . . . . ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG
Template Known Secondary structure  ..............T


TTS





TTTTTT
TT



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S


TTTTSS
TT



SS





TT
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   125....130.........140.........150.........160.........170.........180.........190
 
   524.....530.........540.........550.........560.........570.........580.........590
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Query Sequence  . . QPPGLERLWLEGNPWDCGCPLKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPEVV
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Template Sequence  FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWK. . . . QGVDVKAMTSNVASVQCDNSDKFP
Template Known Secondary structure  SSTT


S

SS
B

SSTTTGGGB



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S
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GGG
BBTT
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B
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   191........200.........210.........220.........230. ........240.........250.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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