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Job DescriptionALS______
Confidence100.00%DateThu Feb 9 13:17:35 GMT 2012
Rank16Aligned Residues295
% Identity31%Templatec2z66A_
PDB info PDB header:immune systemChain: A: PDB Molecule:variable lymphocyte receptor b, toll-like receptor 4; PDBTitle: crystal structure of the vt3 hybrid of human tlr4 and hagfish vlrb.61
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50.........60.........70.........80.........90.........100.........110.. ......
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Query Sequence  CPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGS. . LEPQAL
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Template Sequence  CPSRCSCSGTE. . . . . . IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD
Template Known Secondary structure 

TT
TT......

SS

SS

S


TT



SS





TTTTTT
TT
S

SS


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   24.....30.... .....40.........50.........60.........70.........80.........90.......
 
   119120.........130.........140.........150.........160.........170.........180.........190........
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Query Sequence  LGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRE
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Template Sequence  FGTTSLKYLDLSFNGVITMSSNF. LGLEQLEHLDFQHSNLKQMSEFSVFLSLR. . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S
S




S
S.T
TT


TTSSSTTTTTTTT
T...........................
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   396...400.........410........ .420.........430.........440.......
 
   199200.........210.........220.........230.........240.........250.........260.........270........
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Query Sequence  LVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   279280.........290.........300.........310.........320.........330.........340.........350........
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Query Sequence  AGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   359360.........370.........380.........390.........400.........410.........420.........430........
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Query Sequence  LGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLE
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NLIYLDISHTHTRVAFNGIFNGLSSLEVL
Template Known Secondary structure  ...................................................T


TTS


STTTTTT
TT

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   448.450.........460.........470......
 
   439440.........450.........460.........470.........480.........490.........500.........510........
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Query Sequence  LDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSL
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Template Sequence  KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI
Template Known Secondary structure 
TT
GGG
S

TT
TT


TTS



TTTTTT
TT


TTS

SB

SGGGTT
TT


TTS

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   477..480.........490.........500.........510.........520.........530.........540.........550......
 
   519520.... .....530.........540.........550.........560.........570.........580.........590...
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Query Sequence  RTFTPQ. . . . . PPGLERLWLEGNPWDCGCPLKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPEVVGLD
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Template Sequence  MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV. . . . . . . . . . . . . . . . . EVERMECATPSDKQGMP
Template Known Secondary structure 
B
SSSS




TT


TT


SGGGTGGGBS.................
GGG
BSGGGTT
B
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   557..560.........570.........580.........590.........600.. .......610.........
 
   594...
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Query Sequence  LRDL
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Template Conservation 
  
Template Sequence  VLSL
Template Known Secondary structure  GGG
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   620...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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