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Job DescriptionALS______
Confidence99.80%DateThu Feb 9 13:17:35 GMT 2012
Rank52Aligned Residues117
% Identity26%Templatec1ltxA_
PDB info PDB header:transferase/protein bindingChain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60.........70 .........80.........90.........100.........110.........120.........130.....
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Query Sequence  SVFCSSRNLTRLPD. GVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLR
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Template Sequence  VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL. PPALAALRCLEVLQASDNALENVD. . GVANLPRLQELLLCNNRLQ
Template Known Secondary structure 

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S


GGG
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B
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GGGGG
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B
G..GGSS
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   445....450.........460.........470........ .480.........490.........500.. .......510.........520.
 
   136... 140.........150........ .160.........170......
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Query Sequence  SLAL. GTFAHTPALASLGLSNNRL. . . SRLEDGLFEGLGSLWDLN
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Template Sequence  QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL
Template Known Secondary structure  SGGGGGGGGG
TT


TTSGGGGSTT
TT
SB

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   522.......530.........540.........550.........560......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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