Return to main results Retrieve Phyre Job Id

Job DescriptionALS______
Confidence99.36%DateThu Feb 9 13:17:35 GMT 2012
Rank68Aligned Residues140
% Identity14%Templatec1xeuA_
PDB info PDB header:cell invasionChain: A: PDB Molecule:internalin c; PDBTitle: crystal structure of internalin c from listeria2 monocytogenes
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   457..460.........470.........480.........490.........500.........510.........520.....
Predicted Secondary structure 
























































...........
Query SS confidence 




































































. . . . . . . . . . .
Query Sequence  LGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTPQP. . . . . . . . . . .
Query Conservation     
  
 
                  
  
 

 
 
  
    
  
  
  
 

 
 
      
...........
Alig confidence 

















..






















..























...........
Template Conservation 
       
    

   ..    
  
  
 
  
 
  
  ..
  
  
  
 

 
 
                  
Template Sequence  LANAVKQNLGKQSVTDLV. . SQKELSGVQNFNGDNSNIQSLAG. . MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN
Template Known Secondary structure  T
S
TTS..
TT
S
TTS




TT..GGG
TT



SS




GGGTT
SS



Template Predicted Secondary structure 









..















..
































Template SS confidence 















































































   52.......60......... 70.........80.........90.. .......100.........110.........120.......
 
   526...530.........540... ......550.........560........
Predicted Secondary structure  ..................................














...











Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

















. . .
























Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PGLERLWLEGNPWDCGCP. . . LKALRDFALQNPSAVPRFVQAICEG
Query Conservation  ..................................  
  
 
  
   
 
 ...
  
  
 
  
      
  
  
Alig confidence  ..................................

















...


















..



Template Conservation                                      
  
    
             
  
 

 
 

 
  ..
  
Template Sequence  RNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGG. . LTRL
Template Known Secondary structure  SS

S

TT


SS



SS

SBSGGGTT
TT


TTS


B
GGGGG
TT


TTS


B
TT..STT
Template Predicted Secondary structure 






























































..



Template SS confidence 















































































   128.130.........140.........150.........160.........170.........180.........190.........200. ....
 
   569570.........580.........590.........600..
Predicted Secondary structure 



















Query SS confidence 

































Query Sequence  DDCQPPAYTYNNITCASPPEVVGLDLRDLSEAHF
Query Conservation    
  
 
  
      
  
  
 
 

  
 
Alig confidence 

































Template Conservation    
  
 

 
 

         
  
       
Template Sequence  KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPD
Template Known Secondary structure 








S


B
TT
Template Predicted Secondary structure 























Template SS confidence 

































   206...210.........220.........230.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions