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Job DescriptionALS______
Confidence100.00%DateThu Feb 9 13:17:35 GMT 2012
Rank13Aligned Residues279
% Identity37%Templated1ozna_
SCOP infoLeucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Ngr ectodomain-like
Resolution1.52

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  ACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALL
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Template Conservation   

  
 
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Template Sequence  PCPGACVCYNEPKV. . . TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT
Template Known Secondary structure 


TT

SSS
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SS

SS

TT

TT
S
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TTTTTT
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TTTTT
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   26...30......... 40.........50.........60.........70.........80.........90.........100..
 
   120.........130.. .......140.........150.........160.........170.........180.........190........
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Query Sequence  GLENLCHLHLERN. QLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRE
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Template Sequence  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD. . . . . . . . . . .
Template Known Secondary structure  T
TT



S
TT




TTTTTT
TT


TTS





TTTTTT
TT



SS





T...........
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   103......110.........120.........130.........140.........150.........160.........170.
 
   199200.........210.........220.........230.........240.........250.........260.........270........
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Query Sequence  LVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   279280.........290.........300.........310.........320.........330.........340.........350........
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Query Sequence  AGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   359360.........370.........380.........390.........400.........410.........420.........430........
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Query Sequence  LGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLE
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   439440.........450.........460.........470.........480.........490.........500.........510........
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Query Sequence  LDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSL
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Template Conservation  .............           
                         
                  
  
 
  
 
Template Sequence  . . . . . . . . . . . . . DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL
Template Known Secondary structure  .............TTTTT
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SS



TTTTTT
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SS

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   172.......180.........190.........200.........210.........220.........230........
 
   519520... ......530.........540.........550.........560.........570.........580.........590....
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Query Sequence  RTFTP. . . . QPPGLERLWLEGNPWDCGCPLKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPEVVGLDL
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Template Sequence  SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRG. . . . . . . . . . . . . . . . . . . . SSSEVPCSLPQRLAGRDL
Template Known Secondary structure  S


TT
TT



SS

SGGG

S....................


BSGGGTT
BG
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   239240.........250.........260.........270.........280 .........290........
 
   595....600.....
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Query Sequence  RDLSEAHFAPC
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Template Conservation    
    
 

Template Sequence  KRLAANDLQGC
Template Known Secondary structure  GGS
GGGS


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   299300.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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