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Job DescriptionALS______
Confidence100.00%DateThu Feb 9 13:17:35 GMT 2012
Rank18Aligned Residues256
% Identity59%Templatec2o6qA_
PDB info PDB header:immune systemChain: A: PDB Molecule:variable lymphocyte receptor a; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors a29
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.... .....50.........60.........70.........80.........90.........100.........110....
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Query Sequence  GPACPAA. . . CVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLE
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Template Conservation            
 
   
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Template Sequence  EALCKKDGGVCSCNNNKNS. . . . VDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP
Template Known Secondary structure 


BGGGT
SBTTTT....
TTS

SS

S


TT
S

SS

S


TTSSSS
TT



SS

S


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   24.....30.........40.. .......50.........60.........70.........80.........90.........
 
   115....120.........130.........140.........150.........160.........170.........180.........190....
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Query Sequence  PQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLG
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Template Sequence  AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTTSS
TT



SS





TTTTTT
SS



SS

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   100.........110.........120.........130.........140...
 
   195....200.........210.........220.........230.........240.........250.........260.........270....
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Query Sequence  SLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   275....280.........290.........300.........310.........320.........330.........340.........350....
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Query Sequence  HNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVK
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   355....360.........370.........380.........390.........400.........410.........420.........430....
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Query Sequence  AGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLA
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   435....440.........450.........460.........470.........480.........490.........500.........510....
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Query Sequence  ELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLR
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Template Conservation  ............                                                             
  
 
 
Template Sequence  . . . . . . . . . . . . KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD
Template Known Secondary structure  ............



TTTTTT
TT



SS





TTTTTT
TT



SS

S


TTTTTT
TT



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   144.....150.........160.........170.........180.........190.........200.........210.
 
   515....520.... .....530.........540... ......550.........560.........570.........580.........
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Query Sequence  NNSLRTFTPQ. . . . PPGLERLWLEGNPWDCGCP. LKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPEV
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Template Sequence  NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGL. . . . . . . . . . . . . . . . . . . . GGVDTAGCEK
Template Known Secondary structure  SS

S


TTTTTT
TT



SS
B

SSSSSTT
....................SSTT

BBSS
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   212.......220.........230.........240.........250.........260. ........270.
 
   590.........600.. ...
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Query Sequence  VGLDLRDLSEAHF. APC
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Template Conservation   
  
  
    
 
 
Template Sequence  GGKAVLEITEKDAASDC
Template Known Secondary structure  S
SBGGG

TTTT
S

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   272.......280........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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