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Job DescriptionALS______
Confidence99.91%DateThu Feb 9 13:17:35 GMT 2012
Rank47Aligned Residues287
% Identity16%Templatec3o53A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:protein lrim1; PDBTitle: crystal structure of lrim1 leucine-rich repeat domain
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   65....70.........80.........90.........100.........110.........120.........130.........140....
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Query Sequence  LTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAH
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Template Conservation          .  
 
  

  

   
      
 

  



 
 
  
 
     
  
  
 

 
            
Template Sequence  IHEIKQNG. NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLS
Template Known Secondary structure 

T.TS

TTTTTGGG
S
TTS





TT
TT


TTS

TT
T
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   24.....30. ........40.........50.........60.........70.........80.........90.........100..
 
   145....150.........160.........170.........180.........190.........200.........210.........220....
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Query Sequence  TPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELD
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Template Conservation                                             .....................................
Template Sequence  TLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T



SS
TT



SS

S


SS
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   103......110.........120.........130.........140.....
 
   225....230.........240.........250.........260.........270.........280.........290.........300....
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Query Sequence  LSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIAS
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   305....310.........320.........330.........340.........350.........360.........370.........380....
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Query Sequence  LRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRG
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   385....390.........400.........410.........420.........430.........440.........450.........460....
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Query Sequence  LGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLL
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Template Conservation  ..............................                                                  
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH
Template Known Secondary structure  ..............................

SS


SGGGB
TGGGSS
TTS


GGGGGGGTTT

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   146...150.........160.........170.........180.........190.....
 
   465....470.........480.........490.........500.........510.........520.... .....530.........540.
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Query Sequence  LSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTPQ. . . PPGLERLWLEGNPWDCG
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Template Conservation                     
  
 
  
 
   
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Template Sequence  LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE. FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG
Template Known Secondary structure 
TTS







TT



SS



GG.GGGGTT
S
TTS



TT



TT


TT


B
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   196...200.........210.........220.........230. ........240.........250.........260.........270....
 
   542. ......550.........560.........570.........580
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Query Sequence  CP. . . . . . LKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNN
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Template Conservation   
  
      
  
       
            
       
 
Template Sequence  TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE
Template Known Secondary structure  T
SSSS


SSTT
TTB
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   275....280.........290.........300.........310.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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