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Job DescriptionALS______
Confidence99.91%DateThu Feb 9 13:17:35 GMT 2012
Rank46Aligned Residues323
% Identity23%Templated1jl5a_
SCOP infoLeucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Leucine rich effector protein YopM
Resolution2.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   65....70.........80.........90.........100.........110.........120.........130.........140....
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Query Sequence  LTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLRSLALGTFAH
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Template Conservation 
  
       
  



 
 

 

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Template Sequence  VSRLRDCLDRQAHELELNNLGLSSLPEL. . . . PPHLESLVASCNSLTELPEL. . . . PQSLKSLLVDNNNLKALSDL. . . .
Template Known Secondary structure  T
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   1062.......1070.........1080......... 1090.........1100......... 1110.........1120.........
 
   145....150.........160.........170.........180.........190.........200.........210.........220....
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Query Sequence  TPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELD
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Template Conservation     
  
                                                                         
Template Sequence  PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK
Template Known Secondary structure 
TT



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TT
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   1130.........1140.........1150.........1160.........1170.........1180.........1190.........1200.........
 
   225....230.........240.........250.........260.........270.........280.........290.........300....
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Query Sequence  LSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIAS
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Template Sequence  LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN. .
Template Known Secondary structure 




TT



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   1210.........1220.........1230.........1240.........1250.........1260.........1270.........1280.......
 
   305....310.........320.........330.........340.........350.........360.........370.........380....
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Query Sequence  LRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRG
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   385....390.........400.........410.........420.........430.........440.........450.........460....
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Query Sequence  LGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLL
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Template Conservation  ....................................................................            
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IFSGLSELPPNL
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SS


TT
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   1288.1290.........
 
   465....470.........480.........490.........500.........510.........520.........530.........540....
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Query Sequence  LSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTPQPPGLERLWLEGNPWDCGCPL
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Template Conservation                     
  
 

 
 
  

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Template Sequence  YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP. . . . ALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLR. . . . .
Template Known Secondary structure 


SS

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   1300.........1310.........1320.........1330... ......1340.........1350.........1360.........1370
 
   545....550.........560.........570...
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Query Sequence  KALRDFALQNPSAVPRFVQAICEGDDCQP
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Template Conservation  ............... 

     
  
 
Template Sequence  . . . . . . . . . . . . . . . EFPDIPESVEDLRM
Template Known Secondary structure  ...............S




TT


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   1371........1380....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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