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Job DescriptionALS______
Confidence99.97%DateThu Feb 9 13:17:35 GMT 2012
Rank31Aligned Residues297
% Identity22%Templated1ogqa_
SCOP infoLeucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Polygalacturonase inhibiting protein PGIP
Resolution1.7

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50.........60.........70.........80........
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Query Sequence  ALALLLLSWVALGPRSLEGADPGTPGEAEGPACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSS
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Template Sequence  KQALLQIKKDLGNPTTLSSWLPTT. . . . . . . . . . DCCNRTWLG. . . . . . VLCDTDT. . . . . . . QTYRVNNLDLSGLNLPK
Template Known Secondary structure  TT

GGGTT

TTS..........
TTTT
STT......

SS.......S






SS
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   8.10.........20.........30. ........40 ....... ..50.........60....
 
   8990.........100.........110 .........120.........130.........140.........150.........160.....
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Query Sequence  . . VPPAAFQNLSSLGFLNLQGGQL. GSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGL
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Template Sequence  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS
Template Known Secondary structure 


GGGGG
TT
STTS


GGGGG
TT
S



GGGGG
TT



SSS


GG
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   65....70.........80.........90.........100.........110.........120.........130.........140....
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  FEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQ
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Template Conservation       ...........................................................................
Template Sequence  ISSLP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  GGG
T...........................................................................
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   145....
 
   246...250.........260.........270.........280.........290.........300.........310.........320.....
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Query Sequence  KLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   326...330.........340.........350.........360.........370.........380.........390.........400.....
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Query Sequence  IRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHT
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NLVGITFDGNRISGAIPD
Template Known Secondary structure  ..............................................................T



SS



G
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   150.........160.......
 
   406...410.........420.........430.........440.........450.........460.........470.........480.....
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Query Sequence  FTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAF
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Template Sequence  SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN
Template Known Secondary structure  GGG


TT



SS

GGGGG


S

SS

GGG

TTS

S

SS

BGGG



TT

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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   486...490.........500.........510.........520.... .....530.........540.....
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Query Sequence  WLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFTPQ. . . PPGLERLWLEGNPWDCGCPLK
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Template Sequence  GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP
Template Known Secondary structure 

SS




GGGGG
TT



SS


STTGGGS
GGGT
SSSSTTSS
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   248.250.........260.........270.........280.........290.........300.........310
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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