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Job DescriptionALS______
Confidence100.00%DateThu Feb 9 13:17:35 GMT 2012
Rank26Aligned Residues267
% Identity28%Templatec2z62A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv3 hybrid of human tlr4 and hagfish vlrb.61
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60.........70.........80.........90.........100.........110.........120..
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Query Sequence  AACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALLGLE
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Template Conservation    
       
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Template Sequence  EPCVEVVPNIT. . . . YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS
Template Known Secondary structure 

STTT....
TTS

SS

SSS
TT


TT




TTTTTT
TT
S
TT




TTTTTT
T
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   27..30....... ..40.........50.........60.........70.........80.........90.........100..
 
   123......130.........140.........150.........160.........170.........180.........190.........200..
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Query Sequence  NLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLA
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Template Conservation   
  
                                                                           
Template Sequence  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL
Template Known Secondary structure  T


TT




TTTTTT
TT


TTS



STT


TT
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GGGGG
TT


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   103......110.........120.........130.........140.........150.........160.........170.........180..
 
   203......210.........220.........230.........240.........250.........260.........270.........280..
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Query Sequence  GNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLL
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Template Conservation                 .................................................................
Template Sequence  SSNKIQSIYCTDLRV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
SS



GGGG.................................................................
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   183......190.......
 
   283......290.........300.........310.........320.........330.........340.........350.........360..
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Query Sequence  EDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLT
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Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   363......370.........380.........390.........400.........410.........420.........430.........440..
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Query Sequence  NVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLT
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Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   443......450.........460.........470.........480.........490.........500.........510.........520..
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Query Sequence  SNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLRTFT
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Template Conservation  ...........                              
  
 

 
 
  
    
  
  
  
 

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Template Sequence  . . . . . . . . . . . LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT. . . . . . .
Template Known Secondary structure  ...........T
TT



SS



TTSS
S



SS

S


TTTTTT

S



S.......
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   198.200.........210.........220.........230.........240.........250.........
 
   523......530.........540... ......550.........560.........570.........580........
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Query Sequence  PQPPGLERLWLEGNPWDCGCP. LKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPE
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Template Conservation  .............

  


     
  

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Template Sequence  . . . . . . . . . . . . . NPWDCSCPRIDYLSRWLNKNSQKE. . . . . . . . . . . . . . . . . . . QGSAKCSGSGK
Template Known Secondary structure  .............S
B


TTTTTGGGB...................
S

BBTTT

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   260.........270.........280... ......290....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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