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Job DescriptionALS______
Confidence99.84%DateThu Feb 9 13:17:35 GMT 2012
Rank51Aligned Residues289
% Identity38%Templatec1wwlA_
PDB info PDB header:immune systemChain: A: PDB Molecule:monocyte differentiation antigen cd14; PDBTitle: crystal structure of cd14
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60.........70.........80.........90.........100.........110..
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Query Sequence  PGEAEGPACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGS
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Template Conservation      
   
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Template Sequence  PCELDEESC. . SCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPS
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TT..

B

SSS

GGGGGGSSS
S
TT

TT







B
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   7..10..... ....20.........30.........40.........50.........60.........70.........80....
 
   113.... ..120.........130.........140.........150.........160.... .....170.........180...
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Query Sequence  LEPQA. . . LLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDG. . . . . . LFEGLGSLWDLNLGWNSLA
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Template Conservation             

 
  
 
  
 
          
  
 
  
                        
  
 
  
 
 
Template Sequence  RILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL
Template Known Secondary structure  TTS


B
BS




SSS

S


SS
B
SSSSSTT

TT

S
S

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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   184.....190.........200.........210.........220.........230.........240.........250.........260...
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Query Sequence  VLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFL
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Template Conservation        
  
  
  
 

 
 
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Template Sequence  NFSCEQVRVFPALSTLDLSDNPEL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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TTT



SS



S
TT
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   165....170.........180........
 
   264.....270.........280.........290.........300.........310.........320.........330.........340...
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Query Sequence  GLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   344.....350.........360.........370.........380.........390.........400.........410.........420...
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Query Sequence  TLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLV
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Template Conservation  ............................................................................    
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GERG
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   189190..
 
   424.....430.........440.........450 .........460.........470.. .......480.........490.........
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Query Sequence  GIEEQSLWGLAELLELDLTSNQLTHLP. . . HRLFQGLGKLEYLLLSRNRLAE. LPADALGPLQRAFWLDVSHNRLEALPN
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Template Conservation              
  
 
  
 
             
  
  
 

 
 
              
  
 

 
 
  
  
Template Sequence  LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK
Template Known Secondary structure  S
TTS
TT


TTS



TT


S
TTS


SS


S




TT


TTS

SS

S
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   193......200.........210.........220.........230.........240.........250.........260.........270..
 
   500.........510.........520... ......530........
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Query Sequence  SLLAPLGRLRYLSLRNNSLRTFTP. . QPPGLERLWLEGNPW
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Template Sequence  GL. . . PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF
Template Known Secondary structure  S
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S

SS


S


TTTS

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   273. .....280.........290.........300.........310
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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