Return to main results Retrieve Phyre Job Id

Job DescriptionALS______
Confidence98.87%DateThu Feb 9 13:17:35 GMT 2012
Rank75Aligned Residues138
% Identity14%Templatec2p1nE_
PDB info PDB header:signaling proteinChain: E: PDB Molecule:transport inhibitor response 1 protein; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   74.....80.........90.........100.........110........ .120.........130....... ..140.........150.
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Query Sequence  GGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQAL. LGLENLCHLHLERNQLRSL. ALGTFAHTPALASL
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Template Sequence  KDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL
Template Known Secondary structure  TT



SS


TT

S

SS
TT

S
S
BTSGGGGGSS
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   432.......440.........450.........460.........470.........480.........490.........500.........510.
 
   152.......160........ .170.........180.........190.........200.........210.
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Query Sequence  GLSNNRLSRLEDGLFEG. LGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQP
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Template Sequence  WMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPRFDMPGF
Template Known Secondary structure  SSB
B
TT
TTS
GGGS
TTSB
S
SS
S
S


TT
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   512.......520.........530.........540.........550.........560.........570..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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