Return to main results Retrieve Phyre Job Id

Job DescriptionALS______
Confidence99.95%DateThu Feb 9 13:17:35 GMT 2012
Rank34Aligned Residues120
% Identity29%Templatec2r9uC_
PDB info PDB header:immune systemChain: C: PDB Molecule:variable lymphocyte receptor; PDBTitle: crystal structure of lamprey variable lymphocyte receptor 29132 ectodomain
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
Predicted Secondary structure 























































Query SS confidence 















































































Query Sequence  ACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALL
Query Conservation   
   
 
          
 
    

 

  
   
  
 

 
 
  
    
  
  
  
 

 
 
  
 
  
 
Alig confidence 











......





























































Template Conservation   

  
 
    ......

 
 
 
  

  
   
  
 

 
 
  
    
  
  
  
 

 
 
         
Template Sequence  GCPSQCSCDQTL. . . . . . VNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD
Template Known Secondary structure  SS
TTS
SS......

SS

SS

S


TT
S

SS





TTTTTT
TT



SS





TTTTT
Template Predicted Secondary structure 








......




















































Template SS confidence 















































































   21........30.. .......40.........50.........60.........70.........80.........90....
 
   120.........130.........140.........150.........160.....
Predicted Secondary structure 



































Query SS confidence 













































Query Sequence  GLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGL
Query Conservation   
  
  
 

 
 
  
    
  
  
  
 

 
 
       
Alig confidence 













































Template Conservation   
  
  
 
  
 
  
       
  
  
 
  


 
 
  
Template Sequence  KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI
Template Known Secondary structure  T
TT



SS





TTTTTT
TT
S

SS
B
TTBGGG
Template Predicted Secondary structure 






























Template SS confidence 













































   95....100.........110.........120.........130.........140
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions