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Job DescriptionALS______
Confidence100.00%DateThu Feb 9 13:17:35 GMT 2012
Rank21Aligned Residues201
% Identity39%Templatec2v9sC_
PDB info PDB header:structural proteinChain: C: PDB Molecule:slit homolog 2 protein n-product; PDBTitle: second lrr domain of human slit2
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   40.........50.........60.........70.........80.........90.........100.........110.........
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Query Sequence  ACPAACVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQALL
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Template Conservation   

  
 
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Template Sequence  HCPAACTCSNNI. . . . . . VDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ
Template Known Secondary structure 


TTSTT......
TTS


S


S

TT



SS



TTSSTT
TT


TTS



TTTTT
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   272.......280... ......290.........300.........310.........320.........330.........340.....
 
   120.........130.........140.........150.........160.........170.........180.........190.........
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Query Sequence  GLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLREL
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Template Conservation      
  
 
                  
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Template Sequence  GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T
TT



SS





TTTTTT
TT



SS...........................................
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   346...350.........360.........370.........380..
 
   200.........210.........220.........230.........240.........250.........260.........270.........
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Query Sequence  VLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVA
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   280.........290.........300.........310.........320.........330.........340.........350.........
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Query Sequence  GLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFL
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   360.........370.........380.........390.........400.........410.........420.........430.........
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Query Sequence  GLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLEL
Query Conservation                                                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   440.........450.........460.........470.........480.........490.........500.........510.........
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Query Sequence  DLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLRYLSLRNNSLR
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Template Conservation  ......................................................              
  
 
  
   
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KINLRVDAFQDLHNLNLLSLYDNKLQ
Template Known Secondary structure  ......................................................




GGGGTT
TT



SS

S
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   383......390.........400........
 
   520.... .....530.........540.........550.........560.........570.........580.........590.....
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Query Sequence  TFTPQ. . . . PPGLERLWLEGNPWDCGCPLKALRDFALQNPSAVPRFVQAICEGDDCQPPAYTYNNITCASPPEVVGLDLR
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Template Conservation              
  
 
  

  


 
  
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Template Sequence  TIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETS. . . . . . . . . . . . . . . . . . . . GARCTSPRRLANKRIG
Template Known Secondary structure 


TTSSTT
TT



SS

SGGGS


SS....................

BSGGGTTSBGG
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   410.........420.........430.........440.........450... ......460.........
 
   596...600.. .
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Query Sequence  DLSEAHF. A
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Template Conservation   
      
Template Sequence  QIKSKKFRC
Template Known Secondary structure  GS
GGG


Template Predicted Secondary structure 




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   470........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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