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Job DescriptionALS______
Confidence100.00%DateThu Feb 9 13:17:35 GMT 2012
Rank15Aligned Residues355
% Identity25%Templatec3ojaB_
PDB info PDB header:protein bindingChain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60...... ...70.........80.........90.........100.........
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Query Sequence  GTPGEAEGPACPAACVCSYDDDADELSVFCSSRNLT. RLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQ
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Template Sequence  PRQPEYKCIDSQYDCVFYDVH. . . . . . IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ
Template Known Secondary structure 


S






S
S
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S
SSGGG


SSS
S
T



S
TTS
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   138.140.........150........ .160.........170.........180.........190.........200.........210.
 
   110.........120.........130.........140.........150.........160.........170.........180.........
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Query Sequence  LGSLEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALASLGLSNNRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAA
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Template Sequence  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT
Template Known Secondary structure 


TTTTTT
TT



SS





TTTTTT
TT



SS





TTTTTT
TT



SS


B

TTT
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   214.....220.........230.........240.........250.........260.........270.........280.........290...
 
   190.........200.........210.........220.........230.........240.........250.........260.........
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Query Sequence  FRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSRNALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALR
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Template Sequence  FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN. . . .
Template Known Secondary structure  TTT
TT


TTS

SB

GGG
TT
S

SS

S

TT
S

SS



S

S




SS....
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   294.....300.........310.........320.........330.........340.........350.........360.........
 
   270.........280.........290.........300.........310.........320.........330.........340.........
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Query Sequence  WLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQ
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Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   350.........360.........370.........380.........390.........400.........410.........420.........
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Query Sequence  LQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGKLHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQS
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Template Conservation  .........................................................................       
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NLTDTAW
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GG
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   370......
 
   430.........440.........450.........460.........470.........480.........490.........500.........
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Query Sequence  LWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSRNRLAELPADALGPLQRAFWLDVSHNRLEALPNSLLAPLGRLR
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Template Sequence  LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN. LYGQPIPTLKVLDLSHNHLLHVERN. QPQFDRLE
Template Known Secondary structure  GGG
TT
S

SS


SGGGTT
SS


TTS


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SSS

TT



SS




GGG.TT
S
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   377..380.........390.........400.........410.........420. ........430.........440...... ...450....
 
   510.........520.... .....530.........540.........550
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Query Sequence  YLSLRNNSLRTFTPQ. PPGLERLWLEGNPWDCGCPLKALRDF
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Template Conservation   
 
  
 
  
       
  
 
  
   
          
Template Sequence  NLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNV
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SS







TT


S

SS
TTT
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   455....460.........470.........480.........490......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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