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Job DescriptionALS______
Confidence99.53%DateThu Feb 9 13:17:35 GMT 2012
Rank63Aligned Residues307
% Identity15%Templatec1k5dL_
PDB info PDB header:signaling protein/signaling activatorChain: L: PDB Molecule:ran gtpase activating protein 1; PDBTitle: crystal structure of ran-gppnhp-ranbp1-rangap complex
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   75....80.........90.........100.........110.. .......120.........130.........140.........150
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Query Sequence  GTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGS. . . . LEPQALLGLENLCHLHLERNQLRSLALGTFAHTPALAS
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Template Sequence  SLKLDAITTEDEKSV. FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ
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S


SGG.G
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TT
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S

TT

TTT
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Query Sequence  LGLSNNRLSRLEDGLFEGLGSL. . . WDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFSGLAELRELDLSR
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Template Sequence  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR
Template Known Secondary structure  TT
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S


SGGG
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S
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   8990.........100.........110.........120.........130.........140.........150.........160........
 
   228.230.........240.........250.........260.........270.........280.........290.........300.......
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Query Sequence  NALRAIKANVFVQLPRLQKLYLDRNLIAAVAPGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRP
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Template Sequence  NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT. . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S

TGGG
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S



TGGG
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   169170.........180.........190.........200.........210.........220.......
 
   308.310.........320.........330.........340.........350.........360.........370.........380.......
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Query Sequence  RTFKDLHFLEELQLGHNRIRQLAERSFEGLGQLEVLTLDHNQLQEVKAGAFLGLTNVAVMNLSGNCLRNLPEQVFRGLGK
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   388.390.........400.........410.........420.........430.........440.........450.........460.......
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Query Sequence  LHSLHLEGSCLGRIRPHTFTGLSGLRRLFLKDNGLVGIEEQSLWGLAELLELDLTSNQLTHLPHRLFQGLGKLEYLLLSR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FTHLGSSALAIALKSWPNLRELGLNDCLLSAR
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GGG
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TT



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   228.230.........240.........250.........
 
   468.470.........480.........490.........500.. .......510.........520.........530.
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Query Sequence  NRLAELPADALGPLQRAFWLDVSHNRLEALPNSLL. . . . . APLGRLRYLSLRNNSLRTFTPQPPGLERL
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Template Sequence  GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV
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SS





SS

B
TT


TTSBS
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   260.........270.........280.........290.........300.........310.........320........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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