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Job DescriptionALS______
Confidence99.67%DateThu Feb 9 13:17:35 GMT 2012
Rank59Aligned Residues124
% Identity34%Templatec3g04C_
PDB info PDB header:immune systemChain: C: PDB Molecule:thyrotropin receptor; PDBTitle: crystal structure of the tsh receptor in complex with a thyroid-2 stimulating autoantibody
Resolution2.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   45....50.........60.........70.........80.........90.........100.........110........
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Query Sequence  CVCSYDDDADELSVFCSSRNLTRLPDGVPGGTQALWLDGNNLSSVPPAAFQNLSSLGFLNLQGGQLGSLEPQAL. . . . . .
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Template Sequence  CHQEED. . . . . . . FRVTCKDIQRIP. SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK
Template Known Secondary structure  TT.......T
S
SS

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TT
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S
TTTTTT
TT



SS


TTTS
TT
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   31..... ...40........ .50.........60.........70.........80.........90.........100..
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL
Template Known Secondary structure 

TT


TTS

TT



SS



TT

B

SS
TT


TTTTTTTBSS
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   103......110.........120.........130.........140.........150.........160.........170.........180..
 
   119120.........130.........140..... ....150.........160.........170......
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Query Sequence  . . . . . . . . . . . . . . . LGLENLCHLHLERNQLRSLALGTFAHT. PALASLGLSNNRLSRLEDGLFEGLGSLWDLN
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Template Sequence  KLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN
Template Known Secondary structure 

S


S
TTTTTT
B
TT
TT


TTTTTT
SB

S
TTS





STT
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S


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   183......190.........200.........210.........220.........230.........240.........250......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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