PD2 ca2main
A server for reconstructing the backbone of Calpha proteins using Gaussian mixture models. Please upload a single chain in PDB format.
Upload PDB file with missing (total or partial) backbone atoms:
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Perform energy minimisation
Add sidechains to final model
Please cite:
PD2 ca2main: High quality protein backbone reconstruction from alpha carbons using Gaussian mixture models. Benjamin L. Moore, James W. Murray and James T. MacDonald,
Journal of Computational Chemistry
https://doi.org/10.1002/jcc.23330
Structural alphabet in PDB format
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Contact
Web Server issues:
Lawrence Kelley
or
Harry Powell
Algorithm:
James MacDonald