Phyre 2 alignment of P0ABK5 with c1wp9D_

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Job Description | P0ABK5
Confidence | 24.25% | Date | Wed Jan 25 15:20:22 GMT 2012
Rank | 194 | Aligned Residues | 46
% Identity | 9% | Template | c1wp9D_
PDB info | PDB header:hydrolase | Chain: D: PDB Molecule:atp-dependent rna helicase, putative; | PDBTitle: crystal structure of pyrococcus furiosus hef helicase domain
Resolution | 2.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 256 | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . |  | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | I | S | T | A | R | R | L | M | E | E | E | G | I | L | A | G | I | S | . | S | G | A | A | V | A | A | A | L | K | L | Q | E | D | E | S | F | T | N | K | N | I | V | V | I | L | P | S
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | V | I | Y | A | K | C | K | E | T | N | C | L | I | V | L | P | T | G | L | G | K | T | L | I | A | M | M | I | A | E | Y | R | L | T | K | Y | G | G | K | V | L | M | L | A | P | T
Template Known Secondary structure |  |  |  |  |  |  |  | G | G | G | S |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |  | S |  |  |  |  |  |  | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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