BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (123 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AAR8 Uncharacterized protein ybaV n=69 Tax=Enterobact... 244 4e-64 UniRef50_A7ZIK0 Competence protein ComEA n=33 Tax=Enterobacteria... 243 1e-63 UniRef50_A4W7B3 Competence protein ComEA helix-hairpin-helix rep... 172 4e-42 UniRef50_C6CQU2 Competence protein ComEA helix-hairpin-helix rep... 99 3e-20 UniRef50_B2VHT5 Putative uncharacterized protein ybaV n=1 Tax=Er... 98 7e-20 UniRef50_Q7N0L8 Similar to unknown protein YbaV of Escherichia c... 86 4e-16 UniRef50_A8GAR4 Competence protein ComEA helix-hairpin-helix rep... 84 1e-15 UniRef50_B2K6W2 Competence protein ComEA helix-hairpin-helix rep... 81 1e-14 UniRef50_C9QLR0 DNA uptake protein n=1 Tax=Vibrio orientalis CIP... 79 3e-14 UniRef50_B8KIU0 Competence protein ComEA helix-hairpin-helix rep... 79 4e-14 UniRef50_D2TWD1 Competence protein n=1 Tax=Arsenophonus nasoniae... 79 6e-14 UniRef50_A4BGP1 Putative uncharacterized protein n=1 Tax=Reineke... 77 2e-13 UniRef50_C4UHG5 Putative uncharacterized protein n=1 Tax=Yersini... 77 3e-13 UniRef50_B2Q709 Putative uncharacterized protein n=1 Tax=Provide... 76 3e-13 UniRef50_D0X9N0 Putative uncharacterized protein n=1 Tax=Vibrio ... 76 4e-13 UniRef50_D0SCS9 Putative uncharacterized protein n=1 Tax=Acineto... 74 2e-12 UniRef50_C4U1C4 Competence protein ComEA helix-hairpin-helix rep... 74 2e-12 UniRef50_C3NPA2 DNA uptake protein n=34 Tax=Vibrionaceae RepID=C... 73 3e-12 UniRef50_A4AAS4 Putative uncharacterized protein n=1 Tax=Congreg... 73 3e-12 UniRef50_Q2BK91 Putative uncharacterized protein n=1 Tax=Neptuni... 72 4e-12 UniRef50_B1EKP5 Putative uncharacterized protein n=1 Tax=Escheri... 72 5e-12 UniRef50_C0X8I1 Competence protein comEA n=22 Tax=Enterococcus f... 72 5e-12 UniRef50_Q88LW4 ComEA-related protein n=4 Tax=Pseudomonas RepID=... 72 7e-12 UniRef50_Q2SJI1 DNA uptake protein and related DNA-binding prote... 71 1e-11 UniRef50_B6XA89 Putative uncharacterized protein n=3 Tax=Provide... 71 1e-11 UniRef50_A8FTJ9 Competence protein ComEA helix-hairpin-helix rep... 71 1e-11 UniRef50_Q65RQ5 ComEA protein n=2 Tax=Pasteurellaceae RepID=Q65R... 71 1e-11 UniRef50_Q9CKF6 Putative uncharacterized protein n=1 Tax=Pasteur... 71 1e-11 UniRef50_C5BCK2 Putative uncharacterized protein n=2 Tax=Edwards... 70 1e-11 UniRef50_C6RS77 Competence protein, ComEA helix-hairpin-helix re... 70 2e-11 UniRef50_Q6F851 Putative DNA uptake protein and/or related DNA-b... 70 2e-11 UniRef50_C5BSJ6 DNA uptake protein ComEA n=1 Tax=Teredinibacter ... 69 4e-11 UniRef50_A0YFD4 Competence protein ComEA helix-hairpin-helix reg... 69 4e-11 UniRef50_Q57134 Uncharacterized protein HI1008 n=20 Tax=Pasteure... 68 7e-11 UniRef50_A3QFV7 Competence protein ComEA helix-hairpin-helix rep... 68 1e-10 UniRef50_A8H5Z5 Competence protein ComEA helix-hairpin-helix rep... 68 1e-10 UniRef50_C7RAN1 Competence protein ComEA helix-hairpin-helix rep... 67 1e-10 UniRef50_Q31F08 Competence protein ComEA helix-hairpin-helix fam... 67 1e-10 UniRef50_A4Y5K0 Competence protein ComEA helix-hairpin-helix rep... 67 2e-10 UniRef50_C4K4N8 Putative uncharacterized protein n=1 Tax=Candida... 67 2e-10 UniRef50_Q1YPV7 Putative uncharacterized protein n=1 Tax=gamma p... 67 2e-10 UniRef50_A3N254 DNA uptake protein n=5 Tax=Pasteurellaceae RepID... 66 3e-10 UniRef50_B7RYE3 Competence protein ComEA helix-hairpin-helix rep... 66 3e-10 UniRef50_A8FFE5 Competence protein EA n=2 Tax=Bacillus pumilus R... 66 4e-10 UniRef50_D0IBX9 Putative DNA uptake protein n=1 Tax=Grimontia ho... 65 9e-10 UniRef50_A0KYK0 Competence protein ComEA helix-hairpin-helix rep... 65 9e-10 UniRef50_B8KX36 Competence protein ComEA helix-hairpin-helix rep... 65 1e-09 UniRef50_D0X6V9 Putative uncharacterized protein n=1 Tax=Vibrio ... 65 1e-09 UniRef50_A6W096 Competence protein ComEA helix-hairpin-helix rep... 64 1e-09 UniRef50_Q03F17 DNA uptake protein related DNA-binding protein n... 64 1e-09 UniRef50_B2GBB2 Competence protein n=4 Tax=Lactobacillus RepID=B... 64 1e-09 UniRef50_D0SS69 ComE1 n=1 Tax=Acinetobacter lwoffii SH145 RepID=... 64 1e-09 UniRef50_B4SN39 Competence protein ComEA helix-hairpin-helix rep... 64 1e-09 UniRef50_Q21IS7 Competence protein ComEA helix-hairpin-helix reg... 64 2e-09 UniRef50_Q65H41 ComEA n=6 Tax=Bacillus RepID=Q65H41_BACLD 64 2e-09 UniRef50_Q4ZQA5 Competence protein ComEA helix-hairpin-helix reg... 64 2e-09 UniRef50_Q70T35 ComEA protein n=2 Tax=Bacillus RepID=Q70T35_BACME 64 2e-09 UniRef50_B8CRD8 Competence protein ComEA helix-hairpin-helix reg... 63 3e-09 UniRef50_A1S4Z4 DNA uptake protein-related DNA-binding protein n... 63 3e-09 UniRef50_A3Y3S0 DNA uptake protein n=10 Tax=Vibrionales RepID=A3... 63 3e-09 UniRef50_C9CQC8 DNA-binding protein n=3 Tax=Enterococcus casseli... 63 3e-09 UniRef50_Q1N619 DNA uptake protein and related DNA-binding prote... 62 4e-09 UniRef50_A7BWU4 Competence protein ComEA helix-hairpin-helix rep... 62 4e-09 UniRef50_Q1WU47 ComE operon protein 1 n=2 Tax=Lactobacillus sali... 62 5e-09 UniRef50_C9RUW2 Competence protein ComEA helix-hairpin-helix rep... 62 6e-09 UniRef50_C4LC84 Competence protein ComEA helix-hairpin-helix rep... 62 7e-09 UniRef50_C9PNI8 DNA topoisomerase TopA n=1 Tax=Pasteurella dagma... 62 8e-09 UniRef50_C9R2C6 Competence protein comEA n=2 Tax=Aggregatibacter... 62 8e-09 UniRef50_C0VPS9 DNA uptake protein n=2 Tax=Acinetobacter RepID=C... 62 8e-09 UniRef50_Q8XIJ9 ComE operon protein n=10 Tax=Firmicutes RepID=Q8... 61 9e-09 UniRef50_C2E267 Competence protein ComEA n=4 Tax=Lactobacillus j... 61 9e-09 UniRef50_A8PQE3 Competence protein ComEA helix-hairpin-helix reg... 61 9e-09 UniRef50_UPI0000E0E604 ComEA-related protein n=1 Tax=Glaciecola ... 61 1e-08 UniRef50_B7VAN0 Putative competence protein n=6 Tax=Pseudomonas ... 61 1e-08 UniRef50_A0Z742 Putative uncharacterized protein n=1 Tax=marine ... 61 1e-08 UniRef50_P39694 ComE operon protein 1 n=3 Tax=Bacillus RepID=COM... 61 1e-08 UniRef50_Q60AS7 Putative competence protein ComE n=1 Tax=Methylo... 61 1e-08 UniRef50_A1WUI2 Transcriptional regulator, Fis family n=1 Tax=Ha... 61 1e-08 UniRef50_B1N069 DNA uptake protein n=1 Tax=Leuconostoc citreum K... 61 1e-08 UniRef50_Q38WQ9 Putative bacterial type II secretion/competence ... 61 1e-08 UniRef50_C8PAT3 Competence protein CelA n=1 Tax=Lactobacillus in... 61 1e-08 UniRef50_C0DYR9 Putative uncharacterized protein n=1 Tax=Eikenel... 61 1e-08 UniRef50_A3WQC9 DNA uptake protein, DNA-binding n=1 Tax=Idiomari... 60 1e-08 UniRef50_Q0A9Z1 Competence protein ComEA helix-hairpin-helix rep... 60 2e-08 UniRef50_C6XCS1 Competence protein ComEA helix-hairpin-helix rep... 60 2e-08 UniRef50_B0VFU5 Putative ComEA protein-related protein n=1 Tax=C... 60 2e-08 UniRef50_C0GEP7 Competence protein ComEA helix-hairpin-helix rep... 60 2e-08 UniRef50_Q83MW2 ComE operon protein 1-like protein n=2 Tax=Troph... 60 2e-08 UniRef50_A6NW57 Putative uncharacterized protein n=1 Tax=Bactero... 60 2e-08 UniRef50_A4XKH1 Competence protein ComEA helix-hairpin-helix rep... 60 2e-08 UniRef50_Q3BQY6 ComEA-related DNA uptake protein n=16 Tax=Xantho... 60 3e-08 UniRef50_Q04F99 DNA uptake protein or related DNA-binding protei... 60 3e-08 UniRef50_B7H014 ComE1 n=11 Tax=Acinetobacter RepID=B7H014_ACIB3 60 3e-08 UniRef50_C2E8F5 Competence protein ComEA n=1 Tax=Lactobacillus r... 59 4e-08 UniRef50_B8H8S8 Competence protein ComEA helix-hairpin-helix rep... 59 4e-08 UniRef50_A8ZWL0 Competence protein ComEA helix-hairpin-helix rep... 59 4e-08 UniRef50_B1KLR7 Competence protein ComEA helix-hairpin-helix rep... 59 4e-08 UniRef50_Q4FVH1 Putative competence DNA binding protein ComEA n=... 59 4e-08 UniRef50_Q03QM7 DNA uptake protein related DNA-binding protein n... 59 4e-08 UniRef50_C5S429 DNA uptake protein n=2 Tax=Actinobacillus minor ... 59 5e-08 UniRef50_C2AU83 Competence protein ComEA-like protein with helix... 59 5e-08 UniRef50_C0CK25 Putative uncharacterized protein n=1 Tax=Blautia... 59 6e-08 UniRef50_C6P172 Competence protein ComEA helix-hairpin-helix rep... 59 7e-08 UniRef50_B9YCH8 Putative uncharacterized protein n=1 Tax=Holdema... 59 7e-08 UniRef50_A5VJ84 Competence protein ComEA helix-hairpin-helix rep... 58 7e-08 UniRef50_C4GM10 Putative uncharacterized protein n=2 Tax=Kingell... 58 7e-08 UniRef50_Q483A1 ComE domain protein n=1 Tax=Colwellia psychreryt... 58 8e-08 UniRef50_Q1ZVY8 Putative uncharacterized protein n=4 Tax=Photoba... 58 8e-08 UniRef50_Q0AWK6 Competence protein ComEA helix-hairpin-helix reg... 58 9e-08 UniRef50_B7GKB3 Late competence protein ComEA (DNA binding and u... 58 9e-08 UniRef50_Q03VU1 DNA uptake protein related DNA-binding protein n... 58 9e-08 UniRef50_A5WC41 Competence protein ComEA helix-hairpin-helix rep... 58 9e-08 UniRef50_A7GT21 Competence protein ComEA helix-hairpin-helix rep... 58 9e-08 UniRef50_A8U897 Competence protein comEA n=1 Tax=Carnobacterium ... 58 9e-08 UniRef50_B5JRK5 Putative uncharacterized protein n=1 Tax=gamma p... 58 1e-07 UniRef50_Q47IV8 Competence protein ComEA helix-hairpin-helix reg... 58 1e-07 UniRef50_C0WQ86 Competence protein ComEA n=3 Tax=Lactobacillus R... 58 1e-07 UniRef50_B8GUY5 DNA uptake protein and related DNA-binding prote... 58 1e-07 UniRef50_B5EQJ4 Competence protein ComEA helix-hairpin-helix rep... 58 1e-07 UniRef50_A6LQS8 Competence protein ComEA helix-hairpin-helix rep... 58 1e-07 UniRef50_B6FJL2 Putative uncharacterized protein n=1 Tax=Clostri... 58 1e-07 UniRef50_C1DEM9 ComEA-related protein n=3 Tax=Pseudomonadaceae R... 57 1e-07 UniRef50_C4FWP5 Putative uncharacterized protein n=1 Tax=Catonel... 57 1e-07 UniRef50_C1DBR5 Probable DNA transport competence protein n=1 Ta... 57 2e-07 UniRef50_Q04B44 DNA uptake protein related DNA-binding protein n... 57 2e-07 UniRef50_D0BMQ2 Competence protein ComEA n=1 Tax=Granulicatella ... 57 2e-07 UniRef50_C2C1Y0 ComEA family DNA-binding competence protein n=1 ... 57 2e-07 UniRef50_Q5LYL1 Late competence protein required for DNA binding... 57 2e-07 UniRef50_A3YGE0 Putative uncharacterized protein n=1 Tax=Marinom... 57 2e-07 UniRef50_C7XTN3 Competence protein n=1 Tax=Lactobacillus coleoho... 57 2e-07 UniRef50_Q1ZRP0 Putative DNA uptake protein n=5 Tax=Photobacteri... 57 2e-07 UniRef50_D0LIE3 Competence protein ComEA helix-hairpin-helix rep... 57 2e-07 UniRef50_A5Z3H5 Putative uncharacterized protein n=1 Tax=Eubacte... 57 2e-07 UniRef50_Q3AF21 Competence protein n=1 Tax=Carboxydothermus hydr... 57 2e-07 UniRef50_C2LN90 Competence protein ComEA helix-hairpin-helix rep... 57 2e-07 UniRef50_Q1QEJ7 Competence protein ComEA helix-hairpin-helix reg... 57 2e-07 UniRef50_B9ZR59 Competence protein ComEA helix-hairpin-helix rep... 57 2e-07 UniRef50_B0G876 Putative uncharacterized protein n=2 Tax=Clostri... 57 2e-07 UniRef50_B9MRQ3 Competence protein ComEA helix-hairpin-helix rep... 57 2e-07 UniRef50_C5RDZ4 Competence protein ComEA helix-hairpin-helix rep... 57 2e-07 UniRef50_B0TBC6 Competence protein n=1 Tax=Heliobacterium modest... 57 2e-07 UniRef50_Q49Y31 Putative DNA uptake protein and related DNA-bind... 57 2e-07 UniRef50_B9KYW7 Competence protein ComEA helix-hairpin-helix rep... 57 2e-07 UniRef50_C5VAZ4 Competence protein, ComEA helix-hairpin-helix re... 57 3e-07 UniRef50_Q12LC2 Competence protein ComEA helix-hairpin-helix reg... 57 3e-07 UniRef50_Q5QZ43 DNA uptake protein, DNA-binding n=1 Tax=Idiomari... 56 3e-07 UniRef50_A6WDK9 Competence protein ComEA helix-hairpin-helix rep... 56 4e-07 UniRef50_A4SJ96 ComEA protein n=3 Tax=Aeromonas RepID=A4SJ96_AERS4 56 4e-07 UniRef50_A5ZYC6 Putative uncharacterized protein n=1 Tax=Ruminoc... 56 4e-07 UniRef50_Q042S8 DNA uptake protein related DNA-binding protein n... 56 4e-07 UniRef50_B4U201 DNA receptor late competence protein ComEA n=4 T... 56 4e-07 UniRef50_C7GZM9 Competence protein CelA n=1 Tax=Eubacterium saph... 56 4e-07 UniRef50_C5QSY0 Competence protein comEA n=1 Tax=Staphylococcus ... 56 4e-07 UniRef50_C0ZB15 Putative uncharacterized protein n=1 Tax=Breviba... 56 4e-07 UniRef50_D1CCQ9 Competence protein ComEA helix-hairpin-helix rep... 56 5e-07 UniRef50_B2V0B5 ComE operon protein 1 n=3 Tax=Clostridium RepID=... 56 5e-07 UniRef50_Q7VNA6 Putative uncharacterized protein n=1 Tax=Haemoph... 55 5e-07 UniRef50_A7HNQ6 Competence protein ComEA helix-hairpin-helix rep... 55 5e-07 UniRef50_A8SEZ6 Putative uncharacterized protein n=1 Tax=Faecali... 55 5e-07 UniRef50_Q1ZI08 Putative uncharacterized protein n=1 Tax=Psychro... 55 6e-07 UniRef50_A5EX63 ComEA-related protein n=2 Tax=Dichelobacter nodo... 55 7e-07 UniRef50_C1TL78 Competence protein ComEA-like protein with helix... 55 7e-07 UniRef50_C8PY04 Competence protein ComEA helix-hairpin-helix reg... 55 7e-07 UniRef50_D2NT61 DNA uptake protein n=2 Tax=Rothia mucilaginosa R... 55 7e-07 UniRef50_A1U508 Competence protein ComEA helix-hairpin-helix rep... 55 7e-07 UniRef50_C8NGS6 Competence protein ComEA n=1 Tax=Granulicatella ... 55 8e-07 UniRef50_A5N6K8 Predicted DNA-binding competence protein n=14 Ta... 55 8e-07 UniRef50_B8E2A5 Competence protein ComEA helix-hairpin-helix rep... 55 8e-07 UniRef50_Q3XYU3 Competence protein ComEA helix-hairpin-helix reg... 55 8e-07 UniRef50_C6WWX7 Competence protein ComEA helix-hairpin-helix rep... 55 9e-07 UniRef50_C7RPF6 Competence protein ComEA helix-hairpin-helix rep... 55 9e-07 UniRef50_A9B5P5 Competence protein ComEA helix-hairpin-helix rep... 55 9e-07 UniRef50_A3CLU6 DNA uptake protein, putative n=38 Tax=Streptococ... 55 9e-07 UniRef50_C2M102 ComE operon protein 1 n=1 Tax=Staphylococcus hom... 55 9e-07 UniRef50_Q5WY96 Putative uncharacterized protein n=4 Tax=Legione... 55 9e-07 UniRef50_C8WHN4 Competence protein ComEA helix-hairpin-helix rep... 55 1e-06 UniRef50_Q1J5X8 COME operon protein 1 n=11 Tax=Streptococcus pyo... 55 1e-06 UniRef50_D1RLV1 Competence protein ComEA helix-hairpin-helix rep... 54 1e-06 UniRef50_A9ELT7 DNA-binding protein, putative n=1 Tax=Shewanella... 54 1e-06 UniRef50_Q71ZI6 DNA-binding protein, ComEA family n=18 Tax=Liste... 54 1e-06 UniRef50_B1HUH7 ComE operon protein 1 n=2 Tax=Bacillaceae RepID=... 54 1e-06 UniRef50_C8N8I2 Competence protein CelA n=1 Tax=Cardiobacterium ... 54 1e-06 UniRef50_A5IND1 Competence protein ComEA helix-hairpin-helix rep... 54 2e-06 UniRef50_A6LNS9 Competence protein ComEA helix-hairpin-helix rep... 54 2e-06 UniRef50_A8RS55 Putative uncharacterized protein n=1 Tax=Clostri... 54 2e-06 UniRef50_A6CQY2 Late competence protein (DNA binding and uptake)... 54 2e-06 UniRef50_Q0EYL1 Late competence protein required for DNA binding... 54 2e-06 UniRef50_B4RVR3 Late competence protein (DNA binding and uptake)... 54 2e-06 UniRef50_C6IZI4 Competence protein ComEA helix-hairpin-helix rep... 54 2e-06 UniRef50_Q3IE25 Putative uncharacterized protein n=2 Tax=Alterom... 54 2e-06 UniRef50_C8PFM8 Competence protein ComEA helix-hairpin-helix rep... 54 2e-06 UniRef50_B1I6D0 Competence protein ComEA helix-hairpin-helix rep... 53 3e-06 UniRef50_UPI0001C426BA late competence operon required for DNA b... 53 3e-06 UniRef50_D1B5R3 Competence protein ComEA helix-hairpin-helix rep... 53 3e-06 UniRef50_C0WJQ2 Possible competence protein EA n=4 Tax=Corynebac... 53 3e-06 UniRef50_Q6M3A1 Secreted DNA uptake protein or related DNA-bindi... 53 3e-06 UniRef50_C9A015 Late competence protein ComEA n=1 Tax=Enterococc... 53 3e-06 UniRef50_B6G1L2 Putative uncharacterized protein n=1 Tax=Clostri... 53 3e-06 UniRef50_D1PKN2 Product ComEA n=1 Tax=Subdoligranulum variabile ... 53 3e-06 UniRef50_Q080A1 Competence protein ComEA helix-hairpin-helix rep... 53 3e-06 UniRef50_Q1AVU6 Competence protein ComEA helix-hairpin-helix reg... 53 3e-06 UniRef50_A0JX55 Competence protein ComEA helix-hairpin-helix rep... 53 3e-06 UniRef50_D2RL62 Soluble ligand binding domain protein n=1 Tax=Ac... 53 3e-06 UniRef50_C8WQ77 Competence protein ComEA helix-hairpin-helix rep... 53 3e-06 UniRef50_A8RCA6 Putative uncharacterized protein n=1 Tax=Eubacte... 53 4e-06 UniRef50_Q3SI14 Competence protein ComEA n=1 Tax=Thiobacillus de... 53 4e-06 UniRef50_A5KJM8 Putative uncharacterized protein n=2 Tax=Ruminoc... 53 4e-06 UniRef50_A9WII9 Helix-hairpin-helix motif n=2 Tax=Chloroflexus R... 53 4e-06 UniRef50_A8Z4C9 Possible competence protein comEA n=52 Tax=Staph... 53 4e-06 UniRef50_C2ERZ4 Competence protein comEA n=1 Tax=Lactobacillus v... 52 4e-06 UniRef50_Q3CZ73 Competence protein CelA (Fragment) n=4 Tax=Strep... 52 4e-06 UniRef50_A7VCH8 Putative uncharacterized protein n=1 Tax=Clostri... 52 4e-06 UniRef50_B3PII0 Integral membrane protein n=1 Tax=Cellvibrio jap... 52 4e-06 UniRef50_A9WS83 Competence protein n=1 Tax=Renibacterium salmoni... 52 4e-06 UniRef50_C0W2X2 Competence protein ComEA helix-hairpin-helix rep... 52 4e-06 UniRef50_A6BGR9 Putative uncharacterized protein n=1 Tax=Dorea l... 52 4e-06 UniRef50_A1R6X3 Putative comEA protein n=1 Tax=Arthrobacter aure... 52 5e-06 UniRef50_C5EZQ6 Competence protein ComEA (Fragment) n=1 Tax=Heli... 52 5e-06 UniRef50_C7MNJ1 Competence protein ComEA-like protein with helix... 52 5e-06 UniRef50_C5NY25 ComE operon protein 1 n=1 Tax=Gemella haemolysan... 52 5e-06 UniRef50_Q67SA3 Putative DNA-binding protein n=1 Tax=Symbiobacte... 52 6e-06 UniRef50_Q3A6K8 DNA uptake/competence protein n=1 Tax=Pelobacter... 52 7e-06 UniRef50_B0ADP5 Putative uncharacterized protein n=1 Tax=Clostri... 52 7e-06 UniRef50_Q1QVK1 Competence protein ComEA helix-hairpin-helix reg... 52 7e-06 UniRef50_D2SCU5 Competence protein ComEA helix-hairpin-helix rep... 52 8e-06 UniRef50_A9KCS9 COME operon protein 1 n=6 Tax=Coxiella burnetii ... 52 9e-06 UniRef50_B9CKK4 Competence protein n=1 Tax=Atopobium rimae ATCC ... 51 9e-06 UniRef50_C9LCS3 Competence protein CelA n=1 Tax=Blautia hansenii... 51 9e-06 UniRef50_Q2RKY9 Competence protein ComEA helix-hairpin-helix reg... 51 1e-05 UniRef50_Q15QY4 Competence protein ComEA helix-hairpin-helix rep... 51 1e-05 UniRef50_C0D545 Putative uncharacterized protein n=2 Tax=Clostri... 51 1e-05 UniRef50_C6JE10 DNA uptake protein n=1 Tax=Ruminococcus sp. 5_1_... 51 1e-05 UniRef50_Q1JY69 Competence protein ComEA helix-hairpin-helix reg... 51 1e-05 UniRef50_D2BL64 ComE operon protein 1 n=4 Tax=Lactococcus lactis... 51 1e-05 UniRef50_D1VU74 Late competence protein n=1 Tax=Peptoniphilus la... 51 1e-05 UniRef50_C7N574 Competence protein ComEA-like protein with helix... 51 1e-05 UniRef50_C2D6C0 Possible competence protein ComEA family protein... 51 1e-05 UniRef50_D2MPX9 ComEA protein n=1 Tax=Bulleidia extructa W1219 R... 51 1e-05 UniRef50_A4BM59 Unspecific high-affinity DNA-binding protein n=1... 51 1e-05 UniRef50_C5CHC5 Competence protein ComEA helix-hairpin-helix rep... 51 1e-05 UniRef50_C1D6Y6 Competence protein ComEA helix-hairpin-helix reg... 51 1e-05 UniRef50_UPI0001C358FF helix-hairpin-helix repeat-containing com... 51 1e-05 UniRef50_D0ME87 Competence protein ComEA helix-hairpin-helix rep... 51 1e-05 UniRef50_C7GEH7 ComE operon protein n=1 Tax=Roseburia intestinal... 51 1e-05 UniRef50_D0WN87 Competence protein n=1 Tax=Actinomyces sp. oral ... 51 1e-05 UniRef50_A9KHN6 Competence protein ComEA helix-hairpin-helix rep... 51 1e-05 UniRef50_C2L1I3 Possible helix-hairpin-helix repeat-containing c... 50 1e-05 UniRef50_C6MZI0 Putative uncharacterized protein n=1 Tax=Legione... 50 2e-05 UniRef50_A8VU71 HAD superfamily (Subfamily IIIA) phosphatase, TI... 50 2e-05 UniRef50_C7R5D7 Helix-hairpin-helix DNA-binding class 1 n=1 Tax=... 50 2e-05 >UniRef50_P0AAR8 Uncharacterized protein ybaV n=69 Tax=Enterobacteriaceae RepID=YBAV_ECOLI Length = 123 Score = 244 bits (624), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 123/123 (100%), Positives = 123/123 (100%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT Sbjct: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV Sbjct: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 Query: 121 LTL 123 LTL Sbjct: 121 LTL 123 >UniRef50_A7ZIK0 Competence protein ComEA n=33 Tax=Enterobacteriaceae RepID=A7ZIK0_ECO24 Length = 123 Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 122/123 (99%), Positives = 122/123 (99%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 MKHGIKALLITLSLACAGMSHSALAAASVAKPT VETKAEAPAAQSKAAVPAKASDEEGT Sbjct: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTTVETKAEAPAAQSKAAVPAKASDEEGT 60 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV Sbjct: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 Query: 121 LTL 123 LTL Sbjct: 121 LTL 123 >UniRef50_A4W7B3 Competence protein ComEA helix-hairpin-helix repeat protein n=4 Tax=Enterobacteriaceae RepID=A4W7B3_ENT38 Length = 129 Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 88/129 (68%), Positives = 106/129 (82%), Gaps = 6/129 (4%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEA--PAA----QSKAAVPAKA 54 MK GIKAL ITL++A AGMS SA+AA VAK A + A++ P+A Q+KA AKA Sbjct: 1 MKRGIKALFITLAIATAGMSFSAMAATPVAKTHATSSAADSATPSASASEQTKAKASAKA 60 Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 +DEEGT+VSIN+ASAE+LA AMNGVGLKKAQAI++YR+EYGPFKT++DLKQVPG+GNSLV Sbjct: 61 TDEEGTQVSINSASAEDLAHAMNGVGLKKAQAIIAYRDEYGPFKTIDDLKQVPGIGNSLV 120 Query: 115 ERNLAVLTL 123 ERNL LTL Sbjct: 121 ERNLTHLTL 129 >UniRef50_C6CQU2 Competence protein ComEA helix-hairpin-helix repeat protein n=8 Tax=Enterobacteriaceae RepID=C6CQU2_DICZE Length = 130 Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 62/132 (46%), Positives = 85/132 (64%), Gaps = 11/132 (8%) Query: 1 MKH-GIKALLITLSLACAGMSHSALAAASVAKP--TAVETKAEAPAAQS------KAAVP 51 MK+ GIKAL + ++ G+S A+ + P T+V ++ S KAA P Sbjct: 1 MKNSGIKALCFIVGMSLTGVSTWLHASPTTPAPDKTSVTAAKSPSSSPSADSKVEKAAKP 60 Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 A+DEE VSIN A+AE+LA +NGVGLKKAQAIVSYRE+ GPF +E L++VPG+G+ Sbjct: 61 LVAADEE--EVSINTATAEQLATVLNGVGLKKAQAIVSYREQNGPFTQIEQLQEVPGIGS 118 Query: 112 SLVERNLAVLTL 123 +L+ERN + L L Sbjct: 119 ALIERNQSRLRL 130 >UniRef50_B2VHT5 Putative uncharacterized protein ybaV n=1 Tax=Erwinia tasmaniensis RepID=B2VHT5_ERWT9 Length = 115 Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 46/63 (73%), Positives = 55/63 (87%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +VSINNASA+ELA MNGVGLKKA++IVSYRE+YGPF +E LK+VPG+GN+LVERNL Sbjct: 53 QVSINNASAQELAAVMNGVGLKKAESIVSYREKYGPFTGIEQLKEVPGLGNALVERNLDN 112 Query: 121 LTL 123 L L Sbjct: 113 LKL 115 >UniRef50_Q7N0L8 Similar to unknown protein YbaV of Escherichia coli n=2 Tax=Photorhabdus RepID=Q7N0L8_PHOLL Length = 124 Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/126 (43%), Positives = 75/126 (59%), Gaps = 10/126 (7%) Query: 2 KHGIKALLIT-LSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD---- 56 K GI ++L+ L AC G A+AA V A KA + + S + D Sbjct: 3 KSGILSVLLAGLLYACGG--QFAIAAEQVKDKVA---KAASTTSHSSPEKQLQQQDALKV 57 Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 EE +V+IN ASAEELARA+NG+G+KKAQ IV YRE++G F VE L++V G+G +ER Sbjct: 58 EEKGKVNINTASAEELARALNGIGVKKAQGIVEYREKHGAFTAVEQLQEVQGIGPVFIER 117 Query: 117 NLAVLT 122 N + L+ Sbjct: 118 NRSKLS 123 >UniRef50_A8GAR4 Competence protein ComEA helix-hairpin-helix repeat protein n=4 Tax=Enterobacteriaceae RepID=A8GAR4_SERP5 Length = 129 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/121 (46%), Positives = 70/121 (57%), Gaps = 5/121 (4%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRV 62 KALL L G S +A A +P T A A Q AV A A+DE V Sbjct: 14 FNFKALLTVALLCLTGPSLAAEEKALTGQPVLSVTAANA--GQGAEAV-AAANDE--ASV 68 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 SIN A AE+LA + GVGLKKA++IV YRE+ GPF +E L++VPG+G +L ERN A L Sbjct: 69 SINQADAEQLASILKGVGLKKAESIVRYREQNGPFTQIEQLQEVPGIGPALFERNRARLK 128 Query: 123 L 123 + Sbjct: 129 M 129 >UniRef50_B2K6W2 Competence protein ComEA helix-hairpin-helix repeat protein n=30 Tax=Yersinia RepID=B2K6W2_YERPB Length = 148 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 34/64 (53%), Positives = 52/64 (81%) Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 ASD + +++IN+A+AE+LA+ +NG+G KKA+AI++YRE+ GPF V+ L +VPG+G S Sbjct: 79 ASDNQQHQININSANAEQLAQFLNGIGRKKAEAIITYREQSGPFTHVDQLLEVPGLGPSF 138 Query: 114 VERN 117 +ERN Sbjct: 139 LERN 142 >UniRef50_C9QLR0 DNA uptake protein n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QLR0_VIBOR Length = 97 Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 39/62 (62%), Positives = 48/62 (77%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN+A AEELA +NGVGLKKAQAIVSYR+E+G FKT ++L V G+G LV RNL + Sbjct: 36 VNINSAGAEELAALLNGVGLKKAQAIVSYRDEHGSFKTAQELTAVKGIGEGLVTRNLERI 95 Query: 122 TL 123 L Sbjct: 96 QL 97 >UniRef50_B8KIU0 Competence protein ComEA helix-hairpin-helix repeat region n=6 Tax=Gammaproteobacteria RepID=B8KIU0_9GAMM Length = 141 Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 36/61 (59%), Positives = 49/61 (80%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN ASA ELA +NG+G KAQAIV YRE++GPF++V++L +V G+G S VERN +VL Sbjct: 79 VNINTASAGELASRLNGIGGSKAQAIVRYREQFGPFESVDELSEVAGIGESTVERNRSVL 138 Query: 122 T 122 + Sbjct: 139 S 139 >UniRef50_D2TWD1 Competence protein n=1 Tax=Arsenophonus nasoniae RepID=D2TWD1_9ENTR Length = 122 Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 63/106 (59%), Gaps = 6/106 (5%) Query: 18 GMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE-EGTRVSINNASAEELARAM 76 G H+ALA + ++ + P +K + + + +V+IN AS EELA + Sbjct: 21 GFCHTALAQSD-----QLKVANDQPQTTTKLVINKMDNRQLMDDKVNINTASEEELAEKL 75 Query: 77 NGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 NGVGLKKAQ IV +R+++G FK++E L+ VPG+G +E+N LT Sbjct: 76 NGVGLKKAQLIVLHRKKFGGFKSIEHLQDVPGIGLGFIEKNREKLT 121 >UniRef50_A4BGP1 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BGP1_9GAMM Length = 104 Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 38/62 (61%), Positives = 46/62 (74%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V IN AE+LA MNGVGLKKA+AIVSYREE G F VEDL VPG+G + +E+N A++ Sbjct: 39 VDINGDDAEKLADLMNGVGLKKAEAIVSYREENGAFTAVEDLLMVPGIGPATLEKNRAII 98 Query: 122 TL 123 L Sbjct: 99 RL 100 >UniRef50_C4UHG5 Putative uncharacterized protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UHG5_YERRU Length = 132 Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 1/73 (1%) Query: 46 SKAAVPAKASDEE-GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLK 104 SK P+ S+ E +++ +N ASAEELA ++G+GLKKAQAIV YREE+G F +E L Sbjct: 54 SKLKTPSPGSNREASSQIDVNKASAEELAAGLSGIGLKKAQAIVRYREEFGFFSQLEQLL 113 Query: 105 QVPGMGNSLVERN 117 +V G+G +ERN Sbjct: 114 EVSGIGPMFIERN 126 >UniRef50_B2Q709 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q709_PROST Length = 122 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/123 (42%), Positives = 76/123 (61%), Gaps = 15/123 (12%) Query: 4 GIKALLITLSLACAGMSHSALAA-ASVAKPTAVETKAEAPAAQSKAAVPAKASD--EEGT 60 G A+++T+ L C S SALA A KP A A SK K S+ +E Sbjct: 12 GSAAVILTI-LMC---SQSALAKKAEADKPVA--------AVVSKKPKEEKPSENLKETN 59 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +V+IN ASAEELA+ ++G+G++KA+AIV YRE+YG F T+E++ +V G+G + +E+N Sbjct: 60 QVNINQASAEELAKKLHGIGIQKAKAIVEYREKYGAFNTLENILEVRGIGPAFLEKNRGK 119 Query: 121 LTL 123 L L Sbjct: 120 LAL 122 >UniRef50_D0X9N0 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0X9N0_VIBHA Length = 99 Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 2/76 (2%) Query: 44 AQSKAAVPAKASDEEGTR--VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 A+ +V KA+ EG V++N ASAEE+A +NG+G KKAQ IV YR E+GPFKT Sbjct: 18 AEEGKSVTTKAAKYEGIEITVNVNTASAEEIATLLNGIGTKKAQDIVEYRNEHGPFKTAA 77 Query: 102 DLKQVPGMGNSLVERN 117 DL +V G+G + V++N Sbjct: 78 DLSKVKGIGEATVKKN 93 >UniRef50_D0SCS9 Putative uncharacterized protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SCS9_ACIJO Length = 132 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 63/95 (66%), Gaps = 2/95 (2%) Query: 30 AKPTAVETKAEAPAAQSKAAVPAKASDEEGT-RVSINNASAEELARAMNGVGLKKAQAIV 88 A+ A + + +AP +A P +A T ++S+N AS ++L + + GVGLKKAQAIV Sbjct: 39 AEQQAWDDRIQAPKRVKRAVSPVQAQPMLSTNKISLNQASVDQLQQ-LQGVGLKKAQAIV 97 Query: 89 SYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +YR++ GPFKT+++L+QV G+G ++ +N L L Sbjct: 98 AYRQKQGPFKTIDELQQVRGIGPAIFAKNKTRLGL 132 >UniRef50_C4U1C4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U1C4_YERKR Length = 117 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 33/69 (47%), Positives = 51/69 (73%) Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 SD+ ++IN+A AE+LA+++NG+G KKA+AIV+YRE++G F E L +VPG+G S + Sbjct: 49 SDDVQHPININSADAEQLAQSLNGIGRKKAEAIVNYREQFGFFTDAEQLLEVPGIGPSFL 108 Query: 115 ERNLAVLTL 123 E+N L + Sbjct: 109 EKNSGKLRM 117 >UniRef50_C3NPA2 DNA uptake protein n=34 Tax=Vibrionaceae RepID=C3NPA2_VIBCJ Length = 103 Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/85 (50%), Positives = 51/85 (60%), Gaps = 12/85 (14%) Query: 41 APAAQSKAAVPAKASDEEGT--RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFK 98 APAAQ EEG V+IN ASAEELA + G+GLKKAQAIV YRE GPF Sbjct: 29 APAAQV----------EEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFT 78 Query: 99 TVEDLKQVPGMGNSLVERNLAVLTL 123 ++DL V G+G + V N A + L Sbjct: 79 HIDDLTNVKGIGEATVRNNAARILL 103 >UniRef50_A4AAS4 Putative uncharacterized protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4AAS4_9GAMM Length = 110 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 35/78 (44%), Positives = 55/78 (70%) Query: 46 SKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQ 105 ++A V + +E+ V+IN+A+A ELA + G+G KA+AIV YREE+GPF+++++L + Sbjct: 32 AEAVVVEQKLEEQSAVVNINSATALELAEGLTGIGGSKAEAIVRYREEFGPFESIDELSE 91 Query: 106 VPGMGNSLVERNLAVLTL 123 V G+G + VERN L L Sbjct: 92 VTGIGAATVERNRQRLRL 109 >UniRef50_Q2BK91 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BK91_9GAMM Length = 100 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 48/62 (77%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 + IN AS E+L+ + G+G KA+AIV++RE++GPFKTV++L QV G+G + V +NL V+ Sbjct: 26 LDINTASVEQLSTNLKGIGHSKAEAIVAHREQHGPFKTVDELTQVKGIGKATVSKNLDVM 85 Query: 122 TL 123 T+ Sbjct: 86 TV 87 >UniRef50_B1EKP5 Putative uncharacterized protein n=1 Tax=Escherichia albertii TW07627 RepID=B1EKP5_9ESCH Length = 53 Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 41/53 (77%), Positives = 44/53 (83%), Gaps = 1/53 (1%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPA-AQSKAAVPA 52 MKHGIKALLITLSLACAGMSHSALAAA K +AVETKA+APA AQ+ PA Sbjct: 1 MKHGIKALLITLSLACAGMSHSALAAAPAVKSSAVETKADAPATAQNNKYPPA 53 >UniRef50_C0X8I1 Competence protein comEA n=22 Tax=Enterococcus faecalis RepID=C0X8I1_ENTFA Length = 225 Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 35/73 (47%), Positives = 53/73 (72%), Gaps = 3/73 (4%) Query: 51 PAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 PA+ + EE ++++N A+ EL + ++G+G KKAQ I+ +R+E GPFKTVE+LK VPG+G Sbjct: 154 PAQQNQEE--KINVNTATEAEL-QTISGIGAKKAQEIIRFRDEQGPFKTVEELKNVPGIG 210 Query: 111 NSLVERNLAVLTL 123 VER +LT+ Sbjct: 211 EKTVERLKDMLTV 223 >UniRef50_Q88LW4 ComEA-related protein n=4 Tax=Pseudomonas RepID=Q88LW4_PSEPK Length = 112 Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 15/117 (12%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 M++ + + L+ A S SA A+++A P V A+A ++ Sbjct: 4 MRNNVLSYLLLPLFASLSFSLSAAPASTMAVPEPVPVVAQA---------------QQAP 48 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 R+ +N A A L + +NG+G KA+AIV+YRE GPF +V++L ++ G+GN+L+ERN Sbjct: 49 RLDLNTADALTLQKELNGIGKAKAEAIVAYREANGPFASVDELLEIKGIGNALLERN 105 >UniRef50_Q2SJI1 DNA uptake protein and related DNA-binding protein n=2 Tax=Gammaproteobacteria RepID=Q2SJI1_HAHCH Length = 101 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/69 (49%), Positives = 48/69 (69%) Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 S E+ V+IN A AE LA+A+NGVGLKKA+AI+ +R GPFK + +L V G+G V Sbjct: 32 SAEQQNVVNINTADAEALAKALNGVGLKKAEAIIEFRTTNGPFKDISELALVKGIGEKTV 91 Query: 115 ERNLAVLTL 123 E+N +++ L Sbjct: 92 EKNRSLIVL 100 >UniRef50_B6XA89 Putative uncharacterized protein n=3 Tax=Providencia RepID=B6XA89_9ENTR Length = 124 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 32/63 (50%), Positives = 48/63 (76%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +V+IN ASAEELAR ++G+G +KAQAIV YRE++G F +E++ +V G+G + +E+N Sbjct: 62 QVNINQASAEELARKLSGIGKQKAQAIVEYREKFGAFNAIENILEVQGIGPAFLEKNREK 121 Query: 121 LTL 123 L L Sbjct: 122 LVL 124 >UniRef50_A8FTJ9 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Shewanella sediminis HAW-EB3 RepID=A8FTJ9_SHESH Length = 105 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 2/106 (1%) Query: 19 MSHSALAAASVAKPTAVETK-AEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMN 77 M H+ + A A ++ AEA + V S + ++IN AS +EL +N Sbjct: 1 MKHTVITALFTAALLSLNINIAEAKTKSPEVDVVQPQSQHQSINININTASVQELV-LLN 59 Query: 78 GVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G+G KAQAI+ YR +G F ++ DL +V G+G LVE+N V+TL Sbjct: 60 GIGESKAQAIIDYRTSHGQFDSINDLVKVKGIGTKLVEKNKGVITL 105 >UniRef50_Q65RQ5 ComEA protein n=2 Tax=Pasteurellaceae RepID=Q65RQ5_MANSM Length = 161 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 7/117 (5%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 MK ++ L++ LA + + A A+ P + ET+A K + AK +D G Sbjct: 46 MKLSVRKFLLS-CLAAGSLLSAGTAFAADKVPASAETQA------IKTSETAKPADNIGN 98 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 V+IN A+AEE+ + + G+G KKA+AI+ YRE++G F VE L ++ G+G + +++N Sbjct: 99 TVNINTATAEEIKQTLIGIGAKKAEAIIQYREKHGNFTNVEQLLEIQGIGEATLDKN 155 >UniRef50_Q9CKF6 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CKF6_PASMU Length = 115 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 6/119 (5%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSI 64 +K+LL ++ +S+S+ A A T + K E Q+ + +K D +V+I Sbjct: 3 LKSLLFSV-FVFVSLSNSSNVCAESANMT--KAKTEHAVVQN---IQSKPQDTLNEKVNI 56 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N ASA +L + + G+G KKA+AI+ +RE++GPF +E L+ + G+G +++E+N L L Sbjct: 57 NTASATDLQQKLLGIGAKKAEAIIQHREKHGPFTDIEQLRDIQGIGQAILEKNKTRLQL 115 >UniRef50_C5BCK2 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=C5BCK2_EDWI9 Length = 114 Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 55/92 (59%) Query: 32 PTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYR 91 P A P+ S E RV+IN ASA+ L+ ++G+GL+KA+AIV++R Sbjct: 23 PQAATAPTSVPSTSSVTHSSGAVESAEHGRVNINQASAQALSEGLSGIGLEKARAIVAFR 82 Query: 92 EEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 E++G F +E L QV G+G +L+E+N A L L Sbjct: 83 EQHGVFSRLEQLLQVKGIGAALLEKNRARLAL 114 >UniRef50_C6RS77 Competence protein, ComEA helix-hairpin-helix repeat domain n=2 Tax=Acinetobacter radioresistens RepID=C6RS77_ACIRA Length = 138 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 7/122 (5%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAV-----PAKASDEEGTR 61 LL L LA AG + S K + + Q ++ PA E + Sbjct: 19 GLLACLWLASAGQVQAQQFDDSYLKWKNQQLDHDRRLLQQTGSMTMSSGPAAQISTE--K 76 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 VS+N SA++L + ++GVG KKAQAIV YR + G F ++EDL++V G+G L E+N + L Sbjct: 77 VSLNRGSADQLQQVLSGVGEKKAQAIVEYRNKNGKFNSIEDLQKVKGIGPKLFEKNKSRL 136 Query: 122 TL 123 TL Sbjct: 137 TL 138 >UniRef50_Q6F851 Putative DNA uptake protein and/or related DNA-binding protein n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6F851_ACIAD Length = 128 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 58/84 (69%), Gaps = 2/84 (2%) Query: 34 AVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREE 93 A +T+ + A+ + P + S G +V+IN+A+A+EL + ++GVG KKA AIV YR++ Sbjct: 41 AHDTRLNSSASHHSLSKPTQQSGT-GVKVNINSATAKELQQ-LHGVGEKKALAIVEYRQQ 98 Query: 94 YGPFKTVEDLKQVPGMGNSLVERN 117 YG F +V+DL++V G+G +E+N Sbjct: 99 YGKFASVDDLQKVKGIGPKFIEKN 122 >UniRef50_C5BSJ6 DNA uptake protein ComEA n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BSJ6_TERTT Length = 119 Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 7/92 (7%) Query: 32 PTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYR 91 P A+ A Q+K+ + A + V+IN A A+ +A + G+GLKKAQAIV+YR Sbjct: 35 PLTFAGSADKAADQAKSTLVA-------SSVNINKADAQTIADTLKGIGLKKAQAIVAYR 87 Query: 92 EEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 E+ G FK+++DL V G+G + +E+N +++ L Sbjct: 88 EKNGKFKSMDDLLAVKGVGKATLEKNKSLIAL 119 >UniRef50_A0YFD4 Competence protein ComEA helix-hairpin-helix region n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YFD4_9GAMM Length = 91 Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 46/62 (74%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN A A L+ ++ GVG KAQAIV+YR+ YGPFK+VE+L V G+G+SL+ +N ++ Sbjct: 29 VNINTADAATLSASLKGVGSSKAQAIVTYRDNYGPFKSVEELTAVRGIGDSLLAKNKDII 88 Query: 122 TL 123 L Sbjct: 89 LL 90 >UniRef50_Q57134 Uncharacterized protein HI1008 n=20 Tax=Pasteurellaceae RepID=Y1008_HAEIN Length = 112 Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 13/116 (11%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTA---VETKAEAPAAQSKAAVPAKASDEEGTR 61 +K L ++ L A + S+ A TA V T+AEA A PA SD + Sbjct: 1 MKTLFTSVVLCGALVVSSSFAEEKATXQTAQSVVTTQAEAQVA------PAVVSD----K 50 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 ++IN A+A E+ +++ G+G KKA+AIV YRE++G F E L +V G+G + +E+N Sbjct: 51 LNINTATASEIQKSLTGIGAKKAEAIVQYREKHGNFXNAEQLLEVQGIGKATLEKN 106 >UniRef50_A3QFV7 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Shewanella loihica PV-4 RepID=A3QFV7_SHELP Length = 99 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 1/80 (1%) Query: 44 AQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 A + ++PA + ++V+IN ASA+EL + + G+G KA AIV YR+ +G F ++E+L Sbjct: 21 AAEQVSIPADTAQASLSQVNINTASAQELTQ-LKGIGEAKASAIVEYRDAHGKFNSIEEL 79 Query: 104 KQVPGMGNSLVERNLAVLTL 123 QV G+G ++E+N A+L L Sbjct: 80 TQVKGIGPKVIEQNKAILAL 99 >UniRef50_A8H5Z5 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Shewanella RepID=A8H5Z5_SHEPA Length = 105 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 6/93 (6%) Query: 32 PTAVETK-AEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSY 90 P A ET+ E PA+QS+A K S + V IN+A+A EL+ ++NG+G KA AIV Y Sbjct: 18 PAAAETQVTEKPASQSQA----KQSVAKSELVKINSATAAELS-SLNGIGEAKATAIVEY 72 Query: 91 REEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 R+ +G F +VE+L V G+G LV++N + L+L Sbjct: 73 RKAHGNFSSVEELTNVKGIGEKLVDKNRSQLSL 105 >UniRef50_C7RAN1 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAN1_KANKD Length = 104 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 45/61 (73%) Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 E + V+IN+A A+EL+R + GVG KKA+AI+ YR+++GPFK+ +L V G+G V++ Sbjct: 38 EVSSTVNINSADAKELSRVLVGVGAKKAEAIIEYRQKFGPFKSANELTAVKGIGQKTVDK 97 Query: 117 N 117 N Sbjct: 98 N 98 >UniRef50_Q31F08 Competence protein ComEA helix-hairpin-helix family protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F08_THICR Length = 87 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 44/56 (78%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 V++N ASA+E+A ++NGVG KA+AIV+YR+ +G FKTVE L QV G+G+ + +N Sbjct: 22 VNVNKASAKEIASSLNGVGQVKAEAIVTYRKAHGDFKTVESLGQVKGIGDKTIAKN 77 >UniRef50_A4Y5K0 Competence protein ComEA helix-hairpin-helix repeat protein n=7 Tax=Shewanella RepID=A4Y5K0_SHEPC Length = 127 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/106 (42%), Positives = 65/106 (61%), Gaps = 3/106 (2%) Query: 18 GMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMN 77 G++ +AL A V+ A TKAEA Q++A AK++ E V+IN AS EEL + + Sbjct: 25 GVTLAALLAYPVSAAEA-PTKAEAKM-QAQAKADAKSAVAEVLTVNINTASVEEL-QELK 81 Query: 78 GVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G+G KAQAIV YR + G F ++DL V G+G L+E+N ++ L Sbjct: 82 GIGAAKAQAIVDYRTQNGKFNAIDDLANVSGIGAKLIEQNRHLIKL 127 >UniRef50_C4K4N8 Putative uncharacterized protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4N8_HAMD5 Length = 128 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 5/128 (3%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQ-----SKAAVPAKAS 55 MK K L + L L + + AA S + P+ + K K S Sbjct: 1 MKKTKKLLPVFLLLGTISSAWTVFAAPSEQNNNKYNSSTINPSFRGGVEGKKIKENTKDS 60 Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 +E R+SIN ASAEELA+ +NG+G KKA+AIV YRE+YG F +E+L++V G+G + + Sbjct: 61 NELDERISINTASAEELAKFLNGIGKKKAEAIVQYREKYGEFSEIEELEEVSGIGPAFMR 120 Query: 116 RNLAVLTL 123 +N + L L Sbjct: 121 KNSSKLKL 128 >UniRef50_Q1YPV7 Putative uncharacterized protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPV7_9GAMM Length = 106 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 60/83 (72%), Gaps = 4/83 (4%) Query: 41 APAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTV 100 APA ++++ V S++ +V+IN+ASA ++A+++ GVGLK A+AIV+YR+ +G FK++ Sbjct: 27 APAEKTRSPV----SEQTQQQVNINSASAVDIAKSLEGVGLKTAEAIVAYRDAHGAFKSL 82 Query: 101 EDLKQVPGMGNSLVERNLAVLTL 123 E + V G+G+ +++N A + L Sbjct: 83 ESITMVKGVGSKTLKKNSARILL 105 >UniRef50_A3N254 DNA uptake protein n=5 Tax=Pasteurellaceae RepID=A3N254_ACTP2 Length = 114 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 2/100 (2%) Query: 24 LAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKK 83 L+A S+AKP P Q + K +D++ +V+IN A A E+ + G+G KK Sbjct: 16 LSADSIAKPNNPPVSEPTPVVQ-QMTTTNKTADKQN-QVNINTADAAEIKSKLVGIGEKK 73 Query: 84 AQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 AQAIV YR + G F T+E L +V G+G + +E+N +TL Sbjct: 74 AQAIVDYRTKNGAFITIEQLTEVSGIGKATLEKNRERITL 113 >UniRef50_B7RYE3 Competence protein ComEA helix-hairpin-helix repeat region n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RYE3_9GAMM Length = 115 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 5/78 (6%) Query: 51 PAKASDEE-----GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQ 105 P +A +E+ T V+IN A A LA +NG+G +A+ IV YREE+G F T++ L + Sbjct: 37 PVQAQEEQVPPGMTTIVNINTADAPTLAAGLNGIGTSRAEDIVRYREEFGAFTTLDQLTE 96 Query: 106 VPGMGNSLVERNLAVLTL 123 V G+G S +E+N A +TL Sbjct: 97 VKGVGKSTLEKNRARITL 114 >UniRef50_A8FFE5 Competence protein EA n=2 Tax=Bacillus pumilus RepID=A8FFE5_BACP2 Length = 209 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 35 VETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEY 94 V + EA A A + +E+ V++N A A EL + +NG+G KA+AI++YREE+ Sbjct: 121 VRKQGEAERQTQTAGADAPSGNEKSQSVNVNQADAAEL-QTINGIGPAKAEAIITYREEH 179 Query: 95 GPFKTVEDLKQVPGMGNSLVER 116 G F+ +EDL+ + G G +ER Sbjct: 180 GEFQQIEDLRNISGFGEKTIER 201 >UniRef50_D0IBX9 Putative DNA uptake protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IBX9_VIBHO Length = 94 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%) Query: 51 PAKASDEEGT---RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVP 107 P A D E V+IN A A+EL + ++G+G KAQAI+ YR G F++V+DLK V Sbjct: 19 PIIAQDGEQVTPVEVNINTAEADELDKYLDGIGKAKAQAIIDYRNANGAFESVDDLKGVK 78 Query: 108 GMGNSLVERN 117 G+G S+V++N Sbjct: 79 GIGTSIVDKN 88 >UniRef50_A0KYK0 Competence protein ComEA helix-hairpin-helix repeat protein n=4 Tax=Shewanella RepID=A0KYK0_SHESA Length = 121 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 70/121 (57%), Gaps = 4/121 (3%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRV 62 H + A++ ++ +C + A+AA + V+ +A+ KA AK + + +V Sbjct: 5 HRLPAMVSAIAFSCL-FALPAMAADPAKDVSKVQAQAQTEV--KKATTDAKQAMPDSAQV 61 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +IN AS+E+L + + G+G KAQAI+ YR + G FK +++L V G+G L+E+N ++ Sbjct: 62 NINTASSEQL-QLLKGIGAAKAQAIIDYRTQNGKFKAIDELANVSGIGAKLIEQNRHMIK 120 Query: 123 L 123 L Sbjct: 121 L 121 >UniRef50_B8KX36 Competence protein ComEA helix-hairpin-helix repeat region n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX36_9GAMM Length = 100 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 46/66 (69%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 E V+IN A+AE+L+ A+ G+G+ KA IV YRE GPF+ +++L +V G+G S V++N Sbjct: 34 EDLPVNINTATAEQLSDALKGIGMSKAVKIVEYREANGPFEHIDELSEVNGIGESTVDKN 93 Query: 118 LAVLTL 123 ++ L Sbjct: 94 RQIIVL 99 >UniRef50_D0X6V9 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0X6V9_VIBHA Length = 187 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 40/55 (72%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 V++N ASA ELA ++ GVG KKAQAI+ YR++ G FK DL VPG+G++ V + Sbjct: 126 VNVNKASASELATSLPGVGEKKAQAIIDYRKKNGKFKNASDLTNVPGLGDASVSK 180 >UniRef50_A6W096 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W096_MARMS Length = 104 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 45/62 (72%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 T + IN A+A + A M+GVG+KKA+AI++YR+ G F +V+ L QV G+G++L+ RN Sbjct: 32 TPLDINTATAAQFAAVMSGVGIKKAEAIIAYRDANGGFDSVDQLAQVKGIGDALLTRNRD 91 Query: 120 VL 121 +L Sbjct: 92 LL 93 >UniRef50_Q03F17 DNA uptake protein related DNA-binding protein n=2 Tax=Pediococcus RepID=Q03F17_PEDPA Length = 235 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 1/54 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 V+IN AS EL +NGVG KKA+ I++YRE+ G FK++EDLKQV G+G+ + E Sbjct: 175 VNINTASKAELL-TLNGVGDKKAEQIINYREQQGEFKSIEDLKQVQGIGDKIFE 227 >UniRef50_B2GBB2 Competence protein n=4 Tax=Lactobacillus RepID=B2GBB2_LACF3 Length = 224 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 42/57 (73%), Gaps = 1/57 (1%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 +G V++N A+ E+L + ++G+G KKA I++YR+E+G FKTVEDLK V G G+ V Sbjct: 160 QGDSVNLNTATKEQL-QTIDGIGDKKADKIIAYRQEHGGFKTVEDLKNVDGFGDKTV 215 >UniRef50_D0SS69 ComE1 n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SS69_ACILW Length = 140 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 53/75 (70%), Gaps = 1/75 (1%) Query: 49 AVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 A PA ++ ++S+NNA+ E+L + +NG+G KKA+AI+ +R++ G FK++E+++ V G Sbjct: 67 AKPALSASSAANKISLNNATVEQLQQ-LNGIGQKKAEAIIEHRQKNGKFKSIEEIQLVKG 125 Query: 109 MGNSLVERNLAVLTL 123 +G +L +N A L L Sbjct: 126 IGPALFAKNKAKLAL 140 >UniRef50_B4SN39 Competence protein ComEA helix-hairpin-helix repeat protein n=3 Tax=Stenotrophomonas RepID=B4SN39_STRM5 Length = 108 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 41/62 (66%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 + IN A A+ L + + VG KA+AIV +R +GPF VEDL QV G+G ++VERN + Sbjct: 25 IDINRADAQALQQGLTMVGAAKAEAIVEHRRRHGPFHRVEDLTQVKGIGKAIVERNRQRI 84 Query: 122 TL 123 T+ Sbjct: 85 TV 86 >UniRef50_Q21IS7 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IS7_SACD2 Length = 119 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 12/99 (12%) Query: 25 AAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKA 84 A +VA P A + E PAA+++ V V+IN A AE +A A+ GVG KA Sbjct: 33 AGQAVAAPKA---ETEQPAAETQQVV---------NTVNINKADAEAIATALVGVGKAKA 80 Query: 85 QAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +AIV+YR ++G F ++E L +V G+G + V +N + LTL Sbjct: 81 EAIVAYRTQHGEFTSIEQLAEVKGIGEATVAKNKSRLTL 119 >UniRef50_Q65H41 ComEA n=6 Tax=Bacillus RepID=Q65H41_BACLD Length = 209 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN AS+EEL +A+ G+G KA+A++ YREE GPF TVED+ V G+G ER + + Sbjct: 148 VNINTASSEEL-QAIPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFERIKSAI 206 Query: 122 TL 123 T+ Sbjct: 207 TV 208 >UniRef50_Q4ZQA5 Competence protein ComEA helix-hairpin-helix region n=10 Tax=Pseudomonas RepID=Q4ZQA5_PSEU2 Length = 120 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 46/67 (68%) Query: 51 PAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 PA A ++ RV++N A A+ L + + G+G KA AIV+YRE G F ++++L +V G+G Sbjct: 47 PAMAHEQRKDRVNLNTADAQTLQKELAGIGKNKADAIVAYREANGDFTSIDELIEVKGIG 106 Query: 111 NSLVERN 117 +++ERN Sbjct: 107 KAILERN 113 >UniRef50_Q70T35 ComEA protein n=2 Tax=Bacillus RepID=Q70T35_BACME Length = 214 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/62 (53%), Positives = 45/62 (72%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN A+ +EL + +NG+G KA AIVSYREE G F+TVEDL QV G+G +E+ A + Sbjct: 153 VNINTANTDEL-QTLNGIGPSKASAIVSYREENGLFQTVEDLGQVSGIGEKSLEKIKAQI 211 Query: 122 TL 123 T+ Sbjct: 212 TV 213 >UniRef50_B8CRD8 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CRD8_SHEPW Length = 103 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 60/93 (64%), Gaps = 3/93 (3%) Query: 33 TAVETKAEAPAAQSKAAV-PAKASDEEGTRV-SINNASAEELARAMNGVGLKKAQAIVSY 90 T++ + + AA K+ V +K S + T+V SIN+A+ +L+ + GVG KA+AIV Y Sbjct: 12 TSLMSFSSVQAAVDKSTVETSKTSSHKSTQVISINSANVAQLS-TLKGVGDSKAKAIVDY 70 Query: 91 REEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 R +G F ++ +L V G+G+ L+E+N AVL+L Sbjct: 71 RATHGKFSSISELSNVKGIGDKLIEQNKAVLSL 103 >UniRef50_A1S4Z4 DNA uptake protein-related DNA-binding protein n=1 Tax=Shewanella amazonensis SB2B RepID=A1S4Z4_SHEAM Length = 103 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 16/116 (13%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 LL+TL L A +H L AA EAP ++ A A+ + ++++IN A Sbjct: 4 LLVTLLLGAA-FTHFPLLAA------------EAP--KTDTAPNAEVQMPQTSKININTA 48 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + EL + + G+G KA+AIV YR +YG F +VEDL +V G+G +++ N +L+L Sbjct: 49 TESEL-QLLKGIGQAKAKAIVEYRNQYGRFASVEDLTKVAGVGQKVLDDNRDILSL 103 >UniRef50_A3Y3S0 DNA uptake protein n=10 Tax=Vibrionales RepID=A3Y3S0_9VIBR Length = 99 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 48/77 (62%) Query: 41 APAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTV 100 +PAA + + A+ D V+IN A+AEEL+ + GVG KKAQ IV YR++ G F T Sbjct: 17 SPAAYADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTA 76 Query: 101 EDLKQVPGMGNSLVERN 117 +DL V G+G + V +N Sbjct: 77 DDLVSVKGIGEATVNKN 93 >UniRef50_C9CQC8 DNA-binding protein n=3 Tax=Enterococcus casseliflavus RepID=C9CQC8_ENTCA Length = 213 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 7/106 (6%) Query: 16 CAGMSHSALAAA-SVAKPTAVETKAEAPAAQSKAAVPAKASDEEG-----TRVSINNASA 69 G++ AL A ++A+ + P + +A AS G T++++N A+A Sbjct: 99 AGGLTEEALETAINLAQVLQDQQMVIVPHKEDQAFTEMNASGVGGSQTAVTQINLNQANA 158 Query: 70 EELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 ++L + + GVG KKA+AI++YREEYG FK ++DLK++ G+G E Sbjct: 159 QQL-QELPGVGAKKAEAIIAYREEYGFFKQIDDLKKITGIGEKTFE 203 >UniRef50_Q1N619 DNA uptake protein and related DNA-binding protein n=1 Tax=Bermanella marisrubri RepID=Q1N619_9GAMM Length = 104 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 41/56 (73%), Gaps = 1/56 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 + IN ASAE+L + ++ +G KAQAI+ YRE GPFK +EDL+ V G+G++ + +N Sbjct: 42 IDINTASAEQLTQ-LDNIGPNKAQAIIDYRESNGPFKDLEDLQNVKGIGSTTIHKN 96 >UniRef50_A7BWU4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Beggiatoa sp. PS RepID=A7BWU4_9GAMM Length = 143 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 44/64 (68%) Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 A++ E ++ IN A A LA +NG+G KK AIV YRE++GPF+++ DL +V G+G Sbjct: 32 ANETEVEKIDINTADALLLAYKLNGIGEKKGIAIVEYREKHGPFQSIYDLDKVYGIGLKT 91 Query: 114 VERN 117 +E+N Sbjct: 92 IEKN 95 >UniRef50_Q1WU47 ComE operon protein 1 n=2 Tax=Lactobacillus salivarius RepID=Q1WU47_LACS1 Length = 229 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 44/54 (81%), Gaps = 1/54 (1%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 + +++++N A+ E+L + +NG+G KKA+ I+SYR+E+G FKT+++LK V G+G+ Sbjct: 165 DNSKINLNTATKEQLTQ-LNGIGDKKAELIISYRDEHGKFKTIDELKNVSGIGD 217 >UniRef50_C9RUW2 Competence protein ComEA helix-hairpin-helix repeat protein n=7 Tax=Geobacillus RepID=C9RUW2_GEOSY Length = 207 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 3/93 (3%) Query: 26 AASVAKPTAVETKAEAPAAQSKAAVPAKASD--EEGTRVSINNASAEELARAMNGVGLKK 83 AA V + A+ AA + AV SD +G +V++N A+ EEL + + G+G K Sbjct: 108 AAKVRDEMMIYVPAKGEAAPASNAVGKSPSDGARDGPQVAVNMATEEELMQ-LPGIGPAK 166 Query: 84 AQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 A+AI++YREE+GPF+ VEDL V G+G +E+ Sbjct: 167 AKAIIAYREEHGPFQRVEDLLNVTGIGEKTLEK 199 >UniRef50_C4LC84 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LC84_TOLAT Length = 130 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 1/66 (1%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 E T + +N A+AE+L + GVG KKAQAI++YRE++ F+ +E+L +V G+G L+ N Sbjct: 40 EQTPIDLNTATAEQLM-TLKGVGKKKAQAIITYREQHNGFQRIEELDEVKGIGPKLLSIN 98 Query: 118 LAVLTL 123 L LT+ Sbjct: 99 LVRLTV 104 >UniRef50_C9PNI8 DNA topoisomerase TopA n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PNI8_9PAST Length = 128 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 28/55 (50%), Positives = 40/55 (72%) Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 +IN A+A EL +A+ G+G KKA+AIV YRE +GPF E L +V G+G + +E+N Sbjct: 68 NINTATAIELQKALIGIGTKKAEAIVQYREAHGPFTAAEQLMEVQGIGKATLEKN 122 >UniRef50_C9R2C6 Competence protein comEA n=2 Tax=Aggregatibacter RepID=C9R2C6_AGGAD Length = 193 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 4/86 (4%) Query: 31 KPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSY 90 KP VE K+ A+ K+AV KA +V IN A A L ++G+G KA+AIV Y Sbjct: 104 KPAPVEDKS---TAKEKSAVENKAKITRSKKVDINTADAATLEN-LSGIGEAKAKAIVEY 159 Query: 91 REEYGPFKTVEDLKQVPGMGNSLVER 116 RE+ G FK + DL VPG+G+ +E+ Sbjct: 160 REKNGKFKNLNDLSNVPGIGDVTLEK 185 >UniRef50_C0VPS9 DNA uptake protein n=2 Tax=Acinetobacter RepID=C0VPS9_9GAMM Length = 141 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Query: 42 PAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 P Q + + + G ++S+N A+ ++L ++++GVG KKAQAI+ YR+++G FK ++ Sbjct: 61 PTQQQNVKPVSSSVNISGDKISLNQANLQQL-QSLSGVGEKKAQAIIEYRQKHGAFKALD 119 Query: 102 DLKQVPGMGNSLVERNLAVLTL 123 +L V G+G L+E+N + L L Sbjct: 120 ELMNVKGIGPKLLEKNRSRLIL 141 >UniRef50_Q8XIJ9 ComE operon protein n=10 Tax=Firmicutes RepID=Q8XIJ9_CLOPE Length = 260 Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 6/82 (7%) Query: 40 EAPAAQSKAAVPAKASDEEGTR-----VSINNASAEELARAMNGVGLKKAQAIVSYREEY 94 E+ A+ ++P +S ++G + ++IN AS E L +NG+G KAQAI+ YR+E Sbjct: 172 ESLNAEVTNSIPTNSSGDKGEKNESSVININTASKETLM-TLNGIGESKAQAIIDYRDEI 230 Query: 95 GPFKTVEDLKQVPGMGNSLVER 116 G FK+V+D+ V G+G +E+ Sbjct: 231 GGFKSVDDITNVSGIGEKTLEK 252 >UniRef50_C2E267 Competence protein ComEA n=4 Tax=Lactobacillus jensenii RepID=C2E267_9LACO Length = 216 Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 2/77 (2%) Query: 35 VETKAEAPAAQSKAAVPAKA-SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREE 93 + K E + A+ P+ S+ G ++ +N+A+ +L + +NGVG KKA+ I++YRE+ Sbjct: 128 IPVKGENSPLDTTASQPSSTTSNNGGEKIHLNSATIADLQK-LNGVGQKKAEQIIAYREQ 186 Query: 94 YGPFKTVEDLKQVPGMG 110 GPFK+V+DL +V G+G Sbjct: 187 NGPFKSVDDLTKVSGIG 203 >UniRef50_A8PQE3 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Rickettsiella grylli RepID=A8PQE3_9COXI Length = 111 Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 45/70 (64%) Query: 48 AAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVP 107 A+ P K ++ R++IN L + G+G+K+A+AI++YR+ +GPFK+++DL ++ Sbjct: 36 ASSPTKTAESVSARININTVDEATLVDELKGIGIKRAKAIIAYRDVHGPFKSIDDLIKIK 95 Query: 108 GMGNSLVERN 117 + +V+ N Sbjct: 96 EISKRIVDLN 105 >UniRef50_UPI0000E0E604 ComEA-related protein n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0E604 Length = 121 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 45/57 (78%), Gaps = 1/57 (1%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 T+ +N AS +ELA ++ G+G+KKAQAIV+YRE +G F++VE + +V G+GN L+++ Sbjct: 53 TQYDLNLASTKELA-SIKGIGIKKAQAIVAYRELHGEFESVEQVTKVKGLGNKLLQK 108 >UniRef50_B7VAN0 Putative competence protein n=6 Tax=Pseudomonas aeruginosa RepID=B7VAN0_PSEA8 Length = 109 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 14/121 (11%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRV 62 H IK+ L+ + AC S SA A P A T A + G +V Sbjct: 2 HLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPA--------------TTVSPGEQV 47 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +IN L R +NGVG KA+AI+ YR +GPF +V+ L +V G+G +L+E+N A + Sbjct: 48 NINTVDEAALIRGLNGVGEAKARAILEYRAAHGPFVSVDQLLEVKGVGPALLEKNRARIV 107 Query: 123 L 123 + Sbjct: 108 I 108 >UniRef50_A0Z742 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z742_9GAMM Length = 114 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 44/60 (73%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 + ++V+IN AS E L+ ++ G+GL KA IV +RE YGPF+++++L +V G+G S++ N Sbjct: 48 QSSQVNINTASPELLSDSLLGIGLAKAYRIVEHRESYGPFESIDELVEVKGIGESIIASN 107 >UniRef50_P39694 ComE operon protein 1 n=3 Tax=Bacillus RepID=COMEA_BACSU Length = 205 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 1/86 (1%) Query: 38 KAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPF 97 K E A Q ++ +G V+IN A+ EEL + ++GVG KA+AI++YREE G F Sbjct: 120 KGEETAVQQGGGGSVQSDGGKGALVNINTATLEEL-QGISGVGPSKAEAIIAYREENGRF 178 Query: 98 KTVEDLKQVPGMGNSLVERNLAVLTL 123 +T+ED+ +V G+G E+ + +T+ Sbjct: 179 QTIEDITKVSGIGEKSFEKIKSSITV 204 >UniRef50_Q60AS7 Putative competence protein ComE n=1 Tax=Methylococcus capsulatus RepID=Q60AS7_METCA Length = 116 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 + IN+A+AEE+A M GVG KA+AIV RE +G FK+V+DLK+V G+ ++ +N + Sbjct: 22 LDINSATAEEIAATMTGVGKAKAEAIVKDREAHGNFKSVDDLKRVKGIKEGILAKNRDKI 81 Query: 122 TL 123 T+ Sbjct: 82 TV 83 >UniRef50_A1WUI2 Transcriptional regulator, Fis family n=1 Tax=Halorhodospira halophila SL1 RepID=A1WUI2_HALHL Length = 99 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 39/56 (69%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 V IN ASA+ELA +NGVG +A+AI+ RE GPF+ EDL +V G+G + +E N Sbjct: 34 VDINAASADELASVLNGVGEARAEAIIEEREANGPFQDAEDLSRVSGVGPATLEEN 89 >UniRef50_B1N069 DNA uptake protein n=1 Tax=Leuconostoc citreum KM20 RepID=B1N069_LEUCK Length = 216 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 3/74 (4%) Query: 42 PAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 P ++ V AK SD ++++N A+A EL + + G+G KKA+ I++YRE +G FK V Sbjct: 138 PQPNNERTVIAKKSD--SAKINLNTATANEL-QMLEGIGAKKAEQIIAYRETHGHFKDVT 194 Query: 102 DLKQVPGMGNSLVE 115 +LK +PG+G+ +E Sbjct: 195 ELKGIPGIGDKRIE 208 >UniRef50_Q38WQ9 Putative bacterial type II secretion/competence system, protein ComEA-like n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38WQ9_LACSS Length = 234 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Query: 29 VAKPTAVETKAEAPAAQSKAAVPAKASDEEGT-RVSINNASAEELARAMNGVGLKKAQAI 87 + P + T +E Q+ A AS T ++ +N A + +L + +NG+G KKA+ I Sbjct: 139 IQAPQQIATTSERTQEQASTGTSANASSTSDTAKIDLNQADSTQL-QTLNGIGPKKAEQI 197 Query: 88 VSYREEYGPFKTVEDLKQVPGMGNSLVER 116 ++YR+E G FK +EDL++V G+G E+ Sbjct: 198 IAYRDEQGKFKQIEDLQKVGGIGPKTFEQ 226 >UniRef50_C8PAT3 Competence protein CelA n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PAT3_9LACO Length = 213 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 46/62 (74%), Gaps = 1/62 (1%) Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 SD++ +++IN A+A+EL + ++G+G K+A+ I+ RE G FK+++DLKQV G+G + Sbjct: 146 SDDKQDKININTATAQELQK-LSGIGQKRAEQIIECRERIGGFKSIDDLKQVSGIGVKTI 204 Query: 115 ER 116 E+ Sbjct: 205 EK 206 >UniRef50_C0DYR9 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYR9_EIKCO Length = 142 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 41/56 (73%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +V+IN A+A+EL + +NG+G KA AIV YR GPFK+ ED+K V G+GN + ++ Sbjct: 20 QVNINTATAQEL-QTLNGIGPAKAAAIVEYRTANGPFKSPEDIKNVRGIGNGIYQK 74 >UniRef50_A3WQC9 DNA uptake protein, DNA-binding n=1 Tax=Idiomarina baltica OS145 RepID=A3WQC9_9GAMM Length = 110 Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%) Query: 41 APAAQSKAAVP-AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKT 99 AP S +P +A++ + +++IN A+A+++A AM GVG KA+ IV +RE+ G FK Sbjct: 26 APTPMSSPLMPYVQAAESQYEKLNINTATADQIAVAMIGVGKSKAENIVKFREQLGGFKN 85 Query: 100 VEDLKQVPGMGNSLVERNLAVLTL 123 ++ L +V G+G +++N LT+ Sbjct: 86 IDQLLEVKGIGQRTLDKNRDRLTI 109 >UniRef50_Q0A9Z1 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A9Z1_ALHEH Length = 90 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 38/57 (66%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 R+ IN A A LA + GVG +AQAIV +RE GPF +V+DL QV G+G + +E N Sbjct: 27 RIDINTADAGLLAEELVGVGESRAQAIVEHREANGPFGSVDDLTQVSGIGETTLEEN 83 >UniRef50_C6XCS1 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Betaproteobacteria RepID=C6XCS1_METSD Length = 99 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 1/50 (2%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 V+IN AS EEL + G+G KAQAI+ YR++ G FKTVEDL VPG G+ Sbjct: 22 VNINTASKEEL-ETVKGIGPAKAQAIIDYRKKNGNFKTVEDLNNVPGFGD 70 >UniRef50_B0VFU5 Putative ComEA protein-related protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFU5_9BACT Length = 215 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 55/81 (67%), Gaps = 3/81 (3%) Query: 43 AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED 102 +++K+A +KA++ + V+IN A+ EEL ++G+G KAQAI+ +REE G F+T+ED Sbjct: 137 TSKTKSATISKANNT--SPVNINTANLEELC-TLSGIGEVKAQAIIDWREENGSFETIED 193 Query: 103 LKQVPGMGNSLVERNLAVLTL 123 + +V G+G E+N LT+ Sbjct: 194 IMKVKGIGPKTFEKNKDRLTV 214 >UniRef50_C0GEP7 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEP7_9FIRM Length = 192 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 3/90 (3%) Query: 26 AASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQ 85 A ++A+P + P A+ P E G +V+IN A+A EL A+ G+G KA Sbjct: 97 ALNLAEPLYDGRRINVPFAED-VETPTGGVAESG-KVNINTATAAEL-EALPGIGPAKAA 153 Query: 86 AIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 AI SYREE GPF++VEDL QV G+G VE Sbjct: 154 AISSYREENGPFRSVEDLVQVSGIGVKTVE 183 >UniRef50_Q83MW2 ComE operon protein 1-like protein n=2 Tax=Tropheryma whipplei RepID=Q83MW2_TROWT Length = 193 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 43/60 (71%), Gaps = 1/60 (1%) Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 D E + V+IN A A+ L +++ G+G A+ I+ +R ++GPFK +EDLK++ G+GN L++ Sbjct: 127 DSESSPVNINTADAQRL-QSIKGIGKATAKRIIDWRNKHGPFKRLEDLKKISGIGNKLIK 185 >UniRef50_A6NW57 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW57_9BACE Length = 147 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 7/89 (7%) Query: 35 VETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEY 94 VET+ + PA A +++ ++IN A +E L + + +G K+A AI++YREE+ Sbjct: 65 VETETQTPAPSPSAP------EQQSGLININTADSETL-QTLPSIGEKRAAAIIAYREEH 117 Query: 95 GPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 GPF+ VED+ V G+G ++ + + +T+ Sbjct: 118 GPFRIVEDITNVSGIGEGILSQIIDYITV 146 >UniRef50_A4XKH1 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XKH1_CALS8 Length = 214 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 49/70 (70%), Gaps = 1/70 (1%) Query: 46 SKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQ 105 S+ A + +S + +++IN AS EEL + ++ +G K A+ I+ YR+E+GPFK++E++K Sbjct: 137 SEVAQNSTSSSGQSGKININTASKEEL-KTLDRIGDKLAERIIEYRQEHGPFKSIEEIKN 195 Query: 106 VPGMGNSLVE 115 V G+G+ + E Sbjct: 196 VNGIGDKIFE 205 >UniRef50_Q3BQY6 ComEA-related DNA uptake protein n=16 Tax=Xanthomonadaceae RepID=Q3BQY6_XANC5 Length = 135 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 39/57 (68%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 +V IN ASAEEL + + VG KA+AIV +R+ GPFK+ E+L V G+G VERN Sbjct: 51 KVDINTASAEELDKVLMNVGRSKAEAIVEHRQANGPFKSAEELALVKGIGLKTVERN 107 >UniRef50_Q04F99 DNA uptake protein or related DNA-binding protein n=1 Tax=Oenococcus oeni PSU-1 RepID=Q04F99_OENOB Length = 109 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 ++ IN A L + +NG+G KKA+ IV YREE+G FK+++DLK + G G+ VE+ Sbjct: 47 QIDINTADLSAL-QTINGIGEKKAEEIVKYREEHGKFKSIDDLKNISGFGDKTVEK 101 >UniRef50_B7H014 ComE1 n=11 Tax=Acinetobacter RepID=B7H014_ACIB3 Length = 136 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 19/139 (13%) Query: 1 MKHGIKAL---LITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE 57 M++ I+ L + C G+ ++ A S + E KA+ K + K+S Sbjct: 1 MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQ-EWKAKQQMYDQKLNI-TKSSHS 58 Query: 58 EGTRVS-------------INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLK 104 G+++S +N A+ E + + G+G KKAQAIV YR++ G FK ++++K Sbjct: 59 NGSKISQTKNFNDSTGQIHLNQANVNEFQQ-LKGIGEKKAQAIVEYRQKNGSFKNIDEIK 117 Query: 105 QVPGMGNSLVERNLAVLTL 123 V G+G ++ E+N + L L Sbjct: 118 NVKGIGPAIFEKNKSRLAL 136 >UniRef50_C2E8F5 Competence protein ComEA n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E8F5_9LACO Length = 250 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 1/74 (1%) Query: 43 AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED 102 +AQ++ ++ ++++N AS E+L + + G+G KKA I++YR++ G FKT++D Sbjct: 171 SAQTQTDSTSQGQGGNDGKINLNTASKEQLMQ-LTGIGDKKADEIIAYRQQNGNFKTIDD 229 Query: 103 LKQVPGMGNSLVER 116 LK V G+G+ E+ Sbjct: 230 LKNVSGIGDKTFEK 243 >UniRef50_B8H8S8 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8S8_ARTCA Length = 274 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 10/96 (10%) Query: 35 VETKAEAPAA-------QSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAI 87 + + E PAA Q A P A G R++IN A EEL A+ VG AQ I Sbjct: 182 IPRQGEQPAAGGAGSLGQGSTAPPGSAG--AGARININTAGVEEL-DALPKVGPVLAQRI 238 Query: 88 VSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 V +R+E+GPF VEDL V G+G ++E L ++T+ Sbjct: 239 VDWRKEHGPFSAVEDLDAVDGVGPKMLEALLPLVTV 274 >UniRef50_A8ZWL0 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZWL0_DESOH Length = 114 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 4/79 (5%) Query: 45 QSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLK 104 Q V AKA+ G V+IN AS +EL A+ GVG + AQ I+ YRE G FK+VE L+ Sbjct: 35 QGGKDVVAKAA---GQLVNINTASVDELT-ALTGVGKEIAQRIIEYREANGAFKSVEQLQ 90 Query: 105 QVPGMGNSLVERNLAVLTL 123 V G+G ++E+N + +T+ Sbjct: 91 NVKGIGAKILEKNRSRITV 109 >UniRef50_B1KLR7 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KLR7_SHEWM Length = 107 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 10/93 (10%) Query: 31 KPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSY 90 KP A T E A Q++A + ++IN A +L R + G+G KA+AI+ + Sbjct: 25 KPKATPTPVENSATQAQA---------QSLSININTAQVADLVR-LKGIGEAKAKAIIEF 74 Query: 91 REEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 R+ G FK V++L+QV G+G LVE+N +++ L Sbjct: 75 RQANGNFKAVKELEQVKGIGAKLVEKNRSLIVL 107 >UniRef50_Q4FVH1 Putative competence DNA binding protein ComEA n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FVH1_PSYA2 Length = 115 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 ++IN A+ EL ++G+G KAQAI+ YRE +G FKTV++L +V G+G VE+N L Sbjct: 53 ININRATEGELT-LLHGIGSSKAQAIILYREMFGRFKTVDELTKVKGIGAKTVEKNRGRL 111 Query: 122 TL 123 T+ Sbjct: 112 TV 113 >UniRef50_Q03QM7 DNA uptake protein related DNA-binding protein n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03QM7_LACBA Length = 231 Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 36 ETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYG 95 ET P+ + ++A+ V++N A+ EL + + G+G KKAQ IV YR ++G Sbjct: 145 ETAGSVPSGSTATTASSQATGTPVAVVNLNTATVTELQQ-LTGIGEKKAQKIVDYRTDHG 203 Query: 96 PFKTVEDLKQVPGMGNSLV 114 F++V+DL QVPG G V Sbjct: 204 HFQSVKDLAQVPGFGEKTV 222 >UniRef50_C5S429 DNA uptake protein n=2 Tax=Actinobacillus minor RepID=C5S429_9PAST Length = 132 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 5/91 (5%) Query: 32 PTAVETKAEAPAAQSKAAVPAKASDE-----EGTRVSINNASAEELARAMNGVGLKKAQA 86 P ++ A + A+VPA + + V+IN ASA E+ + G+G KKAQA Sbjct: 35 PAVMQQSTIQQATNTIASVPANTTQQIQQVANPNLVNINVASAAEIQDKLVGIGAKKAQA 94 Query: 87 IVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 IV YR + G F ++E LK+V G+G++ +++N Sbjct: 95 IVDYRTKNGAFSSIEQLKEVSGIGSATLDKN 125 >UniRef50_C2AU83 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AU83_TSUPA Length = 277 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/52 (55%), Positives = 40/52 (76%), Gaps = 1/52 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNS 112 +V+IN ASA EL R + GVG A AI++YRE+ GPFKTV+DL +V G+G++ Sbjct: 216 QVNINTASAAELDR-LPGVGPATAAAIIAYREQNGPFKTVDDLGKVAGIGDA 266 >UniRef50_C0CK25 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CK25_9FIRM Length = 242 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 2/74 (2%) Query: 43 AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED 102 Q+++A + + +G +V+IN A A+ L +NG+G +AQAI++YREE G F++VE Sbjct: 163 VGQTESAGSEQPGESDG-KVNINTADAQTLM-TLNGIGESRAQAILTYREENGLFQSVEQ 220 Query: 103 LKQVPGMGNSLVER 116 +K+V G+G+ + R Sbjct: 221 IKEVSGIGDGIFSR 234 >UniRef50_C6P172 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P172_9PROT Length = 153 Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V++N AS +EL A+ G+G KAQAI+ YR + GPF +VEDLK V G G+ V + + L Sbjct: 22 VNLNTASKDEL-DAVKGIGPAKAQAIIDYRTKNGPFASVEDLKHVKGFGDKTVAKMRSEL 80 Query: 122 TL 123 ++ Sbjct: 81 SV 82 >UniRef50_B9YCH8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCH8_9FIRM Length = 157 Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/53 (52%), Positives = 39/53 (73%), Gaps = 1/53 (1%) Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 +E R+SIN AS E+L + + GVG A+ IV+YR E+G F+T+EDL QVPG+ Sbjct: 92 QETPRISINTASIEQLTQ-LPGVGQATAEKIVAYRAEHGLFQTLEDLMQVPGI 143 >UniRef50_A5VJ84 Competence protein ComEA helix-hairpin-helix repeat protein n=8 Tax=Lactobacillus reuteri RepID=A5VJ84_LACRD Length = 210 Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 53/83 (63%), Gaps = 6/83 (7%) Query: 38 KAEAPAAQSKAAVPAKASDEEGT----RVSINNASAEELARAMNGVGLKKAQAIVSYREE 93 + E P A S + P+ A++E G ++++N A+ E+L + + G+G KKA I+ YR+E Sbjct: 123 QGETPVA-SSSTEPSAANNENGNDNSAKINLNTATKEQLCQ-ITGIGDKKADLILQYRQE 180 Query: 94 YGPFKTVEDLKQVPGMGNSLVER 116 +G FK++++LK++ G G V + Sbjct: 181 HGQFKSIDELKEINGFGEKTVAK 203 >UniRef50_C4GM10 Putative uncharacterized protein n=2 Tax=Kingella oralis ATCC 51147 RepID=C4GM10_9NEIS Length = 132 Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V +N A+ E+L+ + G+ KKA AIV YR++ G FK+V+DLK VPG+G V++ + L Sbjct: 42 VDLNTATVEQLS-TLKGIKAKKATAIVEYRQKNGAFKSVDDLKNVPGIGQKTVDKLRSEL 100 Query: 122 TL 123 T+ Sbjct: 101 TV 102 >UniRef50_Q483A1 ComE domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q483A1_COLP3 Length = 112 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 13/114 (11%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS-KAAVPAKASDEEGTRVSINNASA 69 TLS+ G+ ++ +AK T V A+ +AQS K+ V V++N ++ Sbjct: 11 TLSVLTLGIILLVNSSLGLAKETNVTQAAQGQSAQSVKSQV-----------VNLNKSTF 59 Query: 70 EELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 E+L + GVG KAQAI+ YR++ G FK+V +L +V G+G +V N A L++ Sbjct: 60 EQLV-TLKGVGNTKAQAIIVYRQQVGAFKSVNELTKVSGIGEKIVSDNKARLSI 112 >UniRef50_Q1ZVY8 Putative uncharacterized protein n=4 Tax=Photobacterium RepID=Q1ZVY8_PHOAS Length = 176 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 27/53 (50%), Positives = 39/53 (73%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 V++N ASA ELA ++ G+G KA+AIV YR++ G FKT +DL++V G+G V Sbjct: 115 VNVNTASASELAASLPGIGEAKAKAIVDYRKKNGKFKTSKDLEKVTGLGEKSV 167 >UniRef50_Q0AWK6 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWK6_SYNWW Length = 207 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 2/105 (1%) Query: 13 SLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVP--AKASDEEGTRVSINNASAE 70 L M+ + ++ P E AE Q + +P + AS +V+IN A A Sbjct: 94 DLRLIDMARPLVDGETIVVPGEGELTAEMAGVQGASQLPVSSPASPVGSGKVNINKAPAS 153 Query: 71 ELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 ELA +NG+G +Q IV YRE G F+ +ED+K V G+G E Sbjct: 154 ELADRLNGIGPALSQRIVDYRESNGAFQKIEDIKNVSGIGEKKFE 198 >UniRef50_B7GKB3 Late competence protein ComEA (DNA binding and uptake) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GKB3_ANOFW Length = 198 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 42/56 (75%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +++IN A+ E+L + + G+G KA AI++YREE+GPF+ VEDL V G+G+ +E+ Sbjct: 136 KININTATIEQL-QTLQGIGPVKAAAIIAYREEHGPFQKVEDLLNVSGIGSKSLEK 190 >UniRef50_Q03VU1 DNA uptake protein related DNA-binding protein n=2 Tax=Leuconostoc mesenteroides RepID=Q03VU1_LEUMM Length = 211 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 42/54 (77%), Gaps = 1/54 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 +++N A+ EL + ++G+G+KKA+ I++YREE+G FK++E++KQ+ G+G E Sbjct: 151 INLNTATVVEL-QTLDGIGVKKAEQIIAYREEHGGFKSIEEIKQISGIGEKRFE 203 >UniRef50_A5WC41 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WC41_PSYWF Length = 126 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 5/100 (5%) Query: 28 SVAKPTAVETKAEAPAAQSKAAVPAKASD----EEGTRVSINNASAEELARAMNGVGLKK 83 +V P A + A A Q+ A + + + E+ V +N+A+ EL + + G+G K Sbjct: 27 AVLMPGAWAQQCFADAHQAYAHLINEQQNQQLAEQSVTVHLNSATEGELTQ-LTGIGSNK 85 Query: 84 AQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 AQ I+ YR+ +GPF +V+DL +V G+G+ V +N A +++ Sbjct: 86 AQQIILYRDAFGPFGSVDDLAKVKGIGDKTVAKNRARMSI 125 >UniRef50_A7GT21 Competence protein ComEA helix-hairpin-helix repeat protein n=88 Tax=Bacillus RepID=A7GT21_BACCN Length = 200 Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 41/56 (73%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 ++SIN AS E+L + G+G +KA+AI+ YREE+G F+ +EDL ++ G+G +E+ Sbjct: 138 KISINQASKEQLEN-ITGIGPRKAEAIIKYREEHGAFQKIEDLLEIDGIGEKSLEK 192 >UniRef50_A8U897 Competence protein comEA n=1 Tax=Carnobacterium sp. AT7 RepID=A8U897_9LACT Length = 237 Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 1/56 (1%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 T+V+IN A A EL + ++G+G KKA+ IV YR+E G F+T+EDLK V G+G E Sbjct: 172 TKVNINLADAIELQQ-LSGIGEKKAEQIVLYRQENGSFQTIEDLKNVSGIGEKTFE 226 >UniRef50_B5JRK5 Putative uncharacterized protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRK5_9GAMM Length = 89 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 4/72 (5%) Query: 51 PAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 P A D V+IN A+AE+LA ++G+G KAQAIV++R+ GPF + + L +V G+G Sbjct: 19 PVFAQDS----VNINTATAEQLAEHLDGIGPAKAQAIVAFRQANGPFSSADQLVEVKGIG 74 Query: 111 NSLVERNLAVLT 122 +E N +T Sbjct: 75 LRTLESNRDAIT 86 >UniRef50_Q47IV8 Competence protein ComEA helix-hairpin-helix region n=4 Tax=Betaproteobacteria RepID=Q47IV8_DECAR Length = 265 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 39/50 (78%), Gaps = 1/50 (2%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 +++IN A+ E+L + G+G KA+AIV YR++ GPFK+V++L+ VPG+G Sbjct: 44 QININTATPEQL-DGLKGIGPTKAKAIVDYRKKNGPFKSVDELQNVPGIG 92 >UniRef50_C0WQ86 Competence protein ComEA n=3 Tax=Lactobacillus RepID=C0WQ86_LACBU Length = 247 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 4/97 (4%) Query: 21 HSALAAASVAKPTAVETKAEAP--AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNG 78 + +L A P+A ET + P AA S A + +S E ++++N A +L + +NG Sbjct: 145 NRSLGATPSQSPSA-ETSSTNPQTAATSNAESSSGSSTEGTEKINLNTADKSKL-QELNG 202 Query: 79 VGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 +G KKA I++YR+ +G FK++E+LK VPG G+ + Sbjct: 203 IGDKKADQIIAYRQAHGQFKSIEELKDVPGFGDKTFD 239 >UniRef50_B8GUY5 DNA uptake protein and related DNA-binding protein-like protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUY5_THISH Length = 136 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/49 (55%), Positives = 38/49 (77%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 V+IN A+ EELA A++GVG A IV+YREE+GPF++V+ L +V G+G Sbjct: 75 VNINTATPEELASAISGVGDGVAARIVAYREEHGPFESVDHLTRVQGIG 123 >UniRef50_B5EQJ4 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EQJ4_ACIF5 Length = 135 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN A A L A+ G+G KAQA++ YR+ +GPF++V++L V G+G L+ER VL Sbjct: 24 VNINTADATAL-DALPGIGPAKAQAVLEYRQAHGPFRSVDELTSVHGIGPRLLERLRPVL 82 Query: 122 TL 123 +L Sbjct: 83 SL 84 >UniRef50_A6LQS8 Competence protein ComEA helix-hairpin-helix repeat protein n=5 Tax=Firmicutes RepID=A6LQS8_CLOB8 Length = 228 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 44/56 (78%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 ++++N+A+ ++L + +NG+G KA+ I+ YRE+ G FK++E++K V G+G+++ ER Sbjct: 167 KINLNSATLDQL-KTLNGIGDSKAKGIIEYREKSGGFKSIEEIKNVSGIGDNMFER 221 >UniRef50_B6FJL2 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJL2_9CLOT Length = 191 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 46/65 (70%), Gaps = 1/65 (1%) Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 G +V++N A+ EEL + G+G KA +I+ YREE+G F+++ED+KQ+ G+ + + ++ Sbjct: 128 GGKVNLNTATKEELM-TLAGIGESKADSIIKYREEHGKFQSIEDIKQIEGIKDGVFQKIK 186 Query: 119 AVLTL 123 ++T+ Sbjct: 187 DLITV 191 >UniRef50_C1DEM9 ComEA-related protein n=3 Tax=Pseudomonadaceae RepID=C1DEM9_AZOVD Length = 110 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 41/57 (71%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 +V +N A A L R + G+G KAQAIV YR+ +GPF +V++L +V G+G +++++N Sbjct: 47 KVDLNAADAATLERDLLGIGPAKAQAIVDYRQAHGPFASVDELLEVKGIGAAILDKN 103 >UniRef50_C4FWP5 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWP5_9FIRM Length = 222 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 9/101 (8%) Query: 28 SVAKPTAVETKAEAPAAQ-----SKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLK 82 S+ PT E +AE+ Q S+AA+ + S G +V+IN A +L + G+G K Sbjct: 123 SLYVPTIEEWQAESQGPQANGTGSQAAIVSSPSASSG-KVNINQADLSQL-ETLPGIGAK 180 Query: 83 KAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE--RNLAVL 121 KAQAI+ YR G F ++EDL +V G+G L++ R+L + Sbjct: 181 KAQAIIDYRTANGSFHSLEDLGKVKGIGPKLLDKLRDLVIF 221 >UniRef50_C1DBR5 Probable DNA transport competence protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBR5_LARHH Length = 161 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 39/50 (78%), Gaps = 1/50 (2%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 V++N AS EL ++ +G KAQAI+ +R+++GPFK+V+DL+ VPG+G+ Sbjct: 23 VNVNTASRAEL-ESLPEIGPVKAQAILDWRQQHGPFKSVDDLRNVPGIGD 71 >UniRef50_Q04B44 DNA uptake protein related DNA-binding protein n=12 Tax=Lactobacillus RepID=Q04B44_LACDB Length = 248 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 42/53 (79%), Gaps = 1/53 (1%) Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 G +++N A+A +L + +NG+G KKA+ I++YR+E G FK++++LK+V G+G+ Sbjct: 185 GDLINLNTATASDLQK-LNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGD 236 >UniRef50_D0BMQ2 Competence protein ComEA n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BMQ2_9LACT Length = 201 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 43/58 (74%), Gaps = 2/58 (3%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 +GT ++IN A+ EEL + + G+G KKA+AI+ YR+E+G F+T EDL QV G+G +E Sbjct: 137 QGT-ININTATLEEL-QTIKGIGKKKAEAILQYRKEHGAFRTKEDLLQVKGIGKKALE 192 >UniRef50_C2C1Y0 ComEA family DNA-binding competence protein n=1 Tax=Listeria grayi DSM 20601 RepID=C2C1Y0_LISGR Length = 198 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 5/69 (7%) Query: 52 AKASDEEGTR----VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVP 107 A+ +D + R V+IN AS +EL + + GVG KAQAI+ YRE G F+ VEDLK + Sbjct: 123 AEQTDTDKQRKDDTVNINTASLQEL-QGIPGVGPAKAQAILEYRESTGLFQKVEDLKNIS 181 Query: 108 GMGNSLVER 116 G G +ER Sbjct: 182 GFGEKTIER 190 >UniRef50_Q5LYL1 Late competence protein required for DNA binding and uptake n=4 Tax=Streptococcus RepID=Q5LYL1_STRT1 Length = 231 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 45/56 (80%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 ++++N A++E+L + ++G+G K+A+ I++YRE +G F++V+DLK V G+G+ +++ Sbjct: 169 KINLNTATSEQL-QTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDK 223 >UniRef50_A3YGE0 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YGE0_9GAMM Length = 121 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 43/62 (69%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 + +N A+AE+LA M GVG KKAQAI+ YRE G F +++L V G+G SL+++N L Sbjct: 44 LDVNLATAEQLAAVMVGVGQKKAQAIIEYRETNGAFNALDELIFVKGIGPSLLKKNRVYL 103 Query: 122 TL 123 ++ Sbjct: 104 SI 105 >UniRef50_C7XTN3 Competence protein n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XTN3_9LACO Length = 210 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 T+V++N A+ EEL + ++GVG KKA I+ YR ++G FKT +DLK + G G V Sbjct: 148 TKVNLNTATKEELTK-IDGVGDKKADKILEYRNQHGSFKTPDDLKNITGFGEKTV 201 >UniRef50_Q1ZRP0 Putative DNA uptake protein n=5 Tax=Photobacterium RepID=Q1ZRP0_PHOAS Length = 97 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 42/57 (73%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 +++IN A+ E+L + G+G +KAQAI++YR+ G F +V+DL +V G+G + V++N Sbjct: 35 KININTANVEQLDTLLIGIGAEKAQAIINYRKVNGKFASVDDLTKVKGIGEATVDKN 91 >UniRef50_D0LIE3 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIE3_HALO1 Length = 158 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 60/98 (61%), Gaps = 3/98 (3%) Query: 15 ACAGMSHSALAAASVAKPTAVETK-AEAPAAQSKAAVPAKASDEE-GTRVSINNASAEEL 72 A A + + LA+AS + P ++K A APA + AK+ + ++++N ASAE+L Sbjct: 40 AVAASAPAVLASASDSAPQPTQSKRASAPADDGDSGAKAKSGGKSLRGKLNLNTASAEQL 99 Query: 73 ARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 + + G+G KA IV YRE++G F+ V DL++V G+G Sbjct: 100 -QLLPGIGAAKAGRIVGYREKHGKFRRVRDLRRVKGIG 136 >UniRef50_A5Z3H5 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z3H5_9FIRM Length = 229 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 4/75 (5%) Query: 42 PAAQSKAAVPAKASDEEGTR---VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFK 98 + S K D E + V+IN A E L +++G+G +A+AI++YREE G FK Sbjct: 145 DSQNSSQGTNDKTHDSEDIKENLVNINTADVEGLT-SLSGIGETRAKAIIAYREENGDFK 203 Query: 99 TVEDLKQVPGMGNSL 113 T ED+K V G+G+S+ Sbjct: 204 TKEDIKNVSGIGDSI 218 >UniRef50_Q3AF21 Competence protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AF21_CARHZ Length = 204 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 1/63 (1%) Query: 53 KASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNS 112 K S + +V+IN A+AEEL + GVG A I+ YRE+ GPF T+EDLK+V G+G+ Sbjct: 134 KGSGGQEAKVNINTATAEELDE-LPGVGPATAAKIIEYREQNGPFATIEDLKKVKGIGDK 192 Query: 113 LVE 115 E Sbjct: 193 KFE 195 >UniRef50_C2LN90 Competence protein ComEA helix-hairpin-helix repeat protein n=3 Tax=Proteus RepID=C2LN90_PROMI Length = 124 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 3/100 (3%) Query: 18 GMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMN 77 G+ S L+ A P+ E Q ++AV + +G ++ IN+A+ +EL + Sbjct: 21 GLGLSPLSYADDISPSTSTMLIE-KGDQKESAVSEVNASAQG-KLDINSATLDELM-TLK 77 Query: 78 GVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 G+G KAQAI+ YRE+ G F + +DL +V G+G L+E+N Sbjct: 78 GIGKAKAQAIIDYREKVGRFASFDDLAKVFGIGMKLIEQN 117 >UniRef50_Q1QEJ7 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QEJ7_PSYCK Length = 143 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 ++IN A+ EL ++G+G KAQAI+ YRE +G F+TV++L +V G+G V++N L Sbjct: 81 ININRATEGELT-LLHGIGSNKAQAIILYREMFGSFRTVDELTKVKGIGAKTVDKNRGRL 139 Query: 122 TL 123 T+ Sbjct: 140 TV 141 >UniRef50_B9ZR59 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZR59_9GAMM Length = 94 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 1/59 (1%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 T V++N+ASA+ELA ++ +G KA+AIV +RE +GPF +V+ L V G+G VE NL Sbjct: 31 TPVNVNSASADELA-TLDNIGQVKAEAIVEHREAHGPFASVQALTDVSGVGERTVEMNL 88 >UniRef50_B0G876 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0G876_9FIRM Length = 287 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 2/80 (2%) Query: 30 AKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVS 89 K T+ +E+ S AV + ++G +V++N AS EEL +NG+G +AQAI+ Sbjct: 196 GKVTSTRNASESDETFSVQAVENVSGQDDG-KVNLNTASKEELL-TLNGIGDVRAQAILK 253 Query: 90 YREEYGPFKTVEDLKQVPGM 109 YREE+G F+++E+L +V G+ Sbjct: 254 YREEHGEFRSIEELMEVEGI 273 >UniRef50_B9MRQ3 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MRQ3_ANATD Length = 219 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 43/59 (72%), Gaps = 1/59 (1%) Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 E+ +++IN A+ EEL + +N +G K A+ I+ YR+++GPFK++E++K V G+G + E Sbjct: 153 EDERKININTATKEEL-KTLNRIGDKLAERIIEYRQKHGPFKSIEEIKNVNGIGEKIFE 210 >UniRef50_C5RDZ4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RDZ4_CLOCL Length = 249 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 8/71 (11%) Query: 53 KASDEEGT-------RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQ 105 K D++GT +V IN A+ E+L ++ G+G ++ I+ YRE+ GPFKT+E+LK Sbjct: 172 KKGDDKGTSTEKTDVKVDINTATKEQLM-SLKGIGETYSEKIIEYREKNGPFKTIEELKN 230 Query: 106 VPGMGNSLVER 116 V G+G E+ Sbjct: 231 VSGIGEKTFEK 241 >UniRef50_B0TBC6 Competence protein n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TBC6_HELMI Length = 222 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 1/49 (2%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 ++IN A A EL R + GVG AQ I+ YRE GPF+ +EDL+ VPG+G Sbjct: 161 ININQADAAELDR-LPGVGPSTAQKIIQYRETKGPFQCIEDLQNVPGIG 208 >UniRef50_Q49Y31 Putative DNA uptake protein and related DNA-binding protein n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49Y31_STAS1 Length = 240 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 42/56 (75%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +++IN+A+ +L +NG+G KA+AI+ YR+++GPF++VE LK V G+G +E+ Sbjct: 179 QININDATESQLL-TINGIGPTKAKAIIEYRQQHGPFESVEQLKDVNGIGAKTLEK 233 >UniRef50_B9KYW7 Competence protein ComEA helix-hairpin-helix repeat region n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYW7_THERP Length = 199 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 + IN A+ E+L R + GVG AQ IVSYRE +GPF++ E L +VPG+ +V+ ++ Sbjct: 135 IDINRATVEDLQR-LPGVGPILAQRIVSYRETHGPFQSPEQLAEVPGISPRMVDEWAGLI 193 Query: 122 TL 123 T+ Sbjct: 194 TV 195 >UniRef50_C5VAZ4 Competence protein, ComEA helix-hairpin-helix repeat domain n=2 Tax=Corynebacterium matruchotii RepID=C5VAZ4_9CORY Length = 244 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 42 PAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 P + VP++ + ++S+N A+ +EL + GVG K AQAI++YR+ +G F +++ Sbjct: 164 PPSGISGGVPSQGGTQVTGKISLNTATVQELT-TLTGVGEKTAQAIIAYRDAHGGFTSID 222 Query: 102 DLKQVPGMG 110 +L+QV G+G Sbjct: 223 ELQQVKGIG 231 >UniRef50_Q12LC2 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Shewanella denitrificans OS217 RepID=Q12LC2_SHEDO Length = 137 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 5/80 (6%) Query: 38 KAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPF 97 KAE A++ A+ A S RV+IN A +EL + + G+GL KA+AI+ YRE G Sbjct: 57 KAEIQKAKNSASPDAMDS----YRVNINRADLDELQQ-LKGIGLAKAKAIIEYREHNGKI 111 Query: 98 KTVEDLKQVPGMGNSLVERN 117 ++++L QV G+G +E+N Sbjct: 112 DSLDELTQVSGIGEKFIEQN 131 >UniRef50_Q5QZ43 DNA uptake protein, DNA-binding n=1 Tax=Idiomarina loihiensis RepID=Q5QZ43_IDILO Length = 106 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 43/70 (61%) Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 A EE V+IN SA+E++ + GVG K+A+ I+ RE+ G F VE L V G+G Sbjct: 35 AQAEEVKTVNINTGSAQEISAVLVGVGEKRAEQIIELREQLGGFTEVEQLLDVKGIGAKT 94 Query: 114 VERNLAVLTL 123 +E+N A +T+ Sbjct: 95 LEKNRAFITI 104 >UniRef50_A6WDK9 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Actinomycetales RepID=A6WDK9_KINRD Length = 304 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 4/78 (5%) Query: 44 AQSKAAVPA-KASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED 102 Q AVPA + G + +N A+ EEL + GVG A IV++REE GPF+ VED Sbjct: 225 GQHPVAVPAAPGAGSRGGPLDLNAATPEELD-GLPGVGEVLAGRIVAWREENGPFRDVED 283 Query: 103 LKQVPGMGNSLVE--RNL 118 L +VPG+G +++ R+L Sbjct: 284 LGEVPGIGPKVLDGLRDL 301 >UniRef50_A4SJ96 ComEA protein n=3 Tax=Aeromonas RepID=A4SJ96_AERS4 Length = 106 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 1/61 (1%) Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +E +V++N AS EL A+ G+G KKAQAIV +R++ G F TVE L V G+G + +E Sbjct: 40 KESGKVNLNTASINELT-ALKGIGEKKAQAIVDFRQKQGKFTTVEQLADVSGIGPATLEA 98 Query: 117 N 117 N Sbjct: 99 N 99 >UniRef50_A5ZYC6 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZYC6_9FIRM Length = 228 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%) Query: 32 PTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYR 91 PT E + A A + A P + + V+IN A A L ++++G+G KAQAI++YR Sbjct: 137 PTQEEAEEGALPAAIQPADPGSETTDANGVVNINTADASAL-KSLSGIGDAKAQAILTYR 195 Query: 92 EEYGPFKTVEDLKQVPGMGNS 112 EE+G F ++E++ QVPG+ S Sbjct: 196 EEHGFFSSIEEIMQVPGIKES 216 >UniRef50_Q042S8 DNA uptake protein related DNA-binding protein n=12 Tax=Lactobacillus RepID=Q042S8_LACGA Length = 246 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 40/56 (71%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +V +N A+ ++L + +NGVG KKA+ I++YR++ G FK +EDL +V G+G E+ Sbjct: 185 QVHLNTATVQDLQK-LNGVGQKKAEQIIAYRDQNGGFKQIEDLTKVTGIGEKTFEK 239 >UniRef50_B4U201 DNA receptor late competence protein ComEA n=4 Tax=Streptococcus dysgalactiae group RepID=B4U201_STREM Length = 225 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 51/75 (68%), Gaps = 4/75 (5%) Query: 42 PAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 P++++++A A ++ +V +N AS +L R ++G+G K+AQ I+ RE G FK++E Sbjct: 147 PSSETQSA---SADHQKPEKVHLNRASLADLQR-ISGIGAKRAQDIIDVRESLGGFKSLE 202 Query: 102 DLKQVPGMGNSLVER 116 DL++VPG+G +E+ Sbjct: 203 DLRKVPGIGAKTLEK 217 >UniRef50_C7GZM9 Competence protein CelA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZM9_9FIRM Length = 211 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%) Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 + ++ +G +V++N A A +L + +NG+G A+ I+ YRE G FK VEDL +VPG+G Sbjct: 141 GRDNERDGGKVNLNTADATKL-QTVNGIGPATAEKIIDYRENNGNFKKVEDLVKVPGIGP 199 Query: 112 SLVERNLAVLTL 123 V++ + T+ Sbjct: 200 KTVQKLIKEFTV 211 >UniRef50_C5QSY0 Competence protein comEA n=1 Tax=Staphylococcus epidermidis M23864:W1 RepID=C5QSY0_STAEP Length = 228 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 2/83 (2%) Query: 35 VETKAEAPAAQSKAAVPAKAS-DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREE 93 V TK E P P ++ + E +V++NNA+ EL + + G+G KA+ I++YRE+ Sbjct: 140 VPTKGEPPHTIRNNNSPITSNQNSENKQVNLNNATESEL-KGVPGIGPTKAKEIINYREQ 198 Query: 94 YGPFKTVEDLKQVPGMGNSLVER 116 G F ++DLK++ G G E+ Sbjct: 199 NGRFDKIDDLKKIKGFGEKTFEK 221 >UniRef50_C0ZB15 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB15_BREBN Length = 234 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 40/55 (72%), Gaps = 1/55 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +++N A+A+EL ++ G+G +A+AIV YR + GPF++ +DLKQ+ G+G + R Sbjct: 173 INLNTATADELM-SLPGIGEARAKAIVDYRSKQGPFRSADDLKQIEGIGEKMFAR 226 >UniRef50_D1CCQ9 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCQ9_THET1 Length = 206 Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 39/54 (72%), Gaps = 1/54 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 ++IN A+ E+L + G+G KA AI+ +R+++GPF ++EDL VPG+G S +E Sbjct: 145 ININTATKEQLEE-LPGIGPSKAAAIIEFRQKHGPFNSLEDLLDVPGIGPSTLE 197 >UniRef50_B2V0B5 ComE operon protein 1 n=3 Tax=Clostridium RepID=B2V0B5_CLOBA Length = 204 Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Query: 35 VETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEY 94 + K E S + SD G +++IN A EEL + +NG+G KA+ I+ YRE Sbjct: 118 IHNKNEVKENLSYSQNTVTKSDSSG-KININCAQLEEL-KNLNGIGEAKAKRIIEYRENI 175 Query: 95 GPFKTVEDLKQVPGMGNSLVER 116 G F +VED+K + G+G E+ Sbjct: 176 GTFNSVEDIKNIDGIGEKSFEK 197 >UniRef50_Q7VNA6 Putative uncharacterized protein n=1 Tax=Haemophilus ducreyi RepID=Q7VNA6_HAEDU Length = 119 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 37/56 (66%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 V+IN ASA E+ + G+G KKAQAIV YR + G F ++ + V G+G + +E+N Sbjct: 57 VNINTASAAEIQEKLTGIGEKKAQAIVDYRTKNGNFTHIDQITAVSGIGKATLEKN 112 >UniRef50_A7HNQ6 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HNQ6_FERNB Length = 227 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 1/63 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +++IN A+ EEL + + G+G KAQAI+ YRE+ G FK++E++K V G+G E+ + Sbjct: 165 KININTANLEELQK-LPGIGPSKAQAIIDYREKVGKFKSIEEIKNVKGIGEKTYEKLKEL 223 Query: 121 LTL 123 +T+ Sbjct: 224 ITI 226 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 15/110 (13%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKA-EAPAAQSKAAVPAKASDEEGTRVSINN 66 L++ LS+ +S + A K V T EA + + A P + +N Sbjct: 27 LIVILSIFYRPFYYSKVLAQ---KEQQVNTSVKEANFQKREYASPI---------IDLNT 74 Query: 67 ASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 AS E+L + + G+G KA+AIV YRE+ PF EDL V G+G E+ Sbjct: 75 ASVEQL-QTLPGIGPSKARAIVEYREK-QPFSKPEDLMNVSGIGPKTFEK 122 >UniRef50_A8SEZ6 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SEZ6_9FIRM Length = 149 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Query: 44 AQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 AQ+ +P T+V +N A A+ L + GVG AQAI+ YR ++GPF VED Sbjct: 70 AQTPQTLPDTKELAAYTQVELNTADADALC-TLPGVGPHNAQAILDYRAQHGPFAQVEDA 128 Query: 104 KQVPGMGNSLVE 115 QVPG+ ++V+ Sbjct: 129 AQVPGITQAMVD 140 >UniRef50_Q1ZI08 Putative uncharacterized protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZI08_9GAMM Length = 104 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +++IN AS + A + G+G KKA IV YRE YG FK +EDL V G+G L+E+ Sbjct: 43 KLNINTASIADFA-MIKGLGEKKAGEIVKYRETYGKFKKIEDLLNVTGIGKMLLEKIRPF 101 Query: 121 LTL 123 L+L Sbjct: 102 LSL 104 >UniRef50_A5EX63 ComEA-related protein n=2 Tax=Dichelobacter nodosus RepID=A5EX63_DICNV Length = 94 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 42/63 (66%), Gaps = 1/63 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 ++++N A+ EEL + G+G KAQAIV YR+E+G F ++E L V G+G +L+ + Sbjct: 21 KINLNTATVEELV-LLKGIGTVKAQAIVDYRKEHGDFTSLEQLSSVKGIGKALLAKITPH 79 Query: 121 LTL 123 LTL Sbjct: 80 LTL 82 >UniRef50_C1TL78 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL78_9BACT Length = 229 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%) Query: 44 AQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 A S A ++ E V++N+AS+EEL + G+G K A AI+SYRE+ GPF++V++L Sbjct: 150 ALSYAGTSTGSASERSGAVNLNSASSEEL-ETLPGIGPKTAAAILSYREKIGPFRSVDEL 208 Query: 104 KQVPGMGNSLVERNLAVLTL 123 +V G+G +E ++T+ Sbjct: 209 TKVKGIGPKKLETVRTLVTV 228 >UniRef50_C8PY04 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PY04_9GAMM Length = 107 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 T ++IN AS +L + ++G+G KKAQ I+ YR+ PF T +DL V G+G + V++N Sbjct: 44 TVININTASEAQLTQ-LDGIGAKKAQQIILYRQMIAPFATADDLANVKGIGKATVDKN 100 >UniRef50_D2NT61 DNA uptake protein n=2 Tax=Rothia mucilaginosa RepID=D2NT61_9MICC Length = 391 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 2/72 (2%) Query: 50 VPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 PA ++ + T V+IN A+AEEL + + +G AQ I+++RE +G F++V++L VPG+ Sbjct: 319 TPAGSAQKGSTPVNINTATAEEL-QTLPRIGPAMAQRIIAWREAHGGFRSVDELDAVPGI 377 Query: 110 GNSLVERNLAVL 121 G S++E NL L Sbjct: 378 GPSMLE-NLRPL 388 >UniRef50_A1U508 Competence protein ComEA helix-hairpin-helix repeat protein n=3 Tax=Marinobacter RepID=A1U508_MARAV Length = 91 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 1/56 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 V+IN A LA +++GVG KAQAI+ YRE GPF ++E L V G+G VE+N Sbjct: 30 VNINTADVATLA-SLSGVGESKAQAIIDYREANGPFASIEALADVKGIGARTVEKN 84 >UniRef50_C8NGS6 Competence protein ComEA n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NGS6_9LACT Length = 214 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 8/77 (10%) Query: 39 AEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFK 98 A+ P Q K +EG +V+IN A+ EEL + + G+G KKA+AI+ YR++ G FK Sbjct: 137 AQTPTPQKKEV------GKEG-KVNINTATVEEL-KTLKGIGEKKAEAIIEYRKQNGSFK 188 Query: 99 TVEDLKQVPGMGNSLVE 115 E+L +V G+G L E Sbjct: 189 NKEELMKVRGIGKKLYE 205 >UniRef50_A5N6K8 Predicted DNA-binding competence protein n=14 Tax=Clostridium RepID=A5N6K8_CLOK5 Length = 200 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 10/109 (9%) Query: 15 ACAGMSHSALAAA-SVAKP------TAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 AC G ++ A + ++AK V+ K++ Q + + + S E +++IN A Sbjct: 87 ACGGFTNEANSYKLNLAKKLKDEDYIYVDKKSDNENLQLQNGLQGETS--ENAKININTA 144 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 + EEL + + G+G AQ I+ YRE+ G F ++EDLK V +G+ +E+ Sbjct: 145 TKEEL-KTIPGIGDVTAQKIMDYREQNGGFSSIEDLKNVDRIGDKTLEK 192 >UniRef50_B8E2A5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2A5_DICTD Length = 187 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/81 (40%), Positives = 46/81 (56%), Gaps = 5/81 (6%) Query: 36 ETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYG 95 E + ++ A S + SD +V+IN AS EEL ++ G+G AQ I+ YREE G Sbjct: 105 ENELKSQAILSTRKIDTSKSD----KVNINTASKEEL-ESLPGIGPTLAQRIIEYREENG 159 Query: 96 PFKTVEDLKQVPGMGNSLVER 116 PF + EDL V G+G +ER Sbjct: 160 PFGSAEDLLNVKGIGEKKLER 180 >UniRef50_Q3XYU3 Competence protein ComEA helix-hairpin-helix region n=13 Tax=Enterococcus faecium RepID=Q3XYU3_ENTFC Length = 242 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%) Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 D E +++IN A+ EL + + G+G KAQ I+ +REE G F+ VEDL+++ G+G VE Sbjct: 175 DSEPPKININTATPSELQQ-IPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVE 233 Query: 116 RNLAVLTL 123 + +T+ Sbjct: 234 KLKNFVTI 241 >UniRef50_C6WWX7 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WWX7_METML Length = 210 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 38/49 (77%), Gaps = 1/49 (2%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 V+IN A+ EL ++NG+G KAQAI+ YR++ G FK+V+DL++V G+G Sbjct: 22 VNINTATQAEL-ESLNGIGPVKAQAIIDYRKKNGNFKSVDDLEKVNGVG 69 >UniRef50_C7RPF6 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RPF6_9PROT Length = 260 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 45/62 (72%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V++N A+ +EL + + G+G KA+AI+ YR + G FKTV+DL +VPG+G +++ + + + Sbjct: 22 VNVNTANEKEL-QMLTGIGPAKAKAIIDYRTKNGEFKTVDDLIKVPGIGPAVLGKMKSDV 80 Query: 122 TL 123 TL Sbjct: 81 TL 82 >UniRef50_A9B5P5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5P5_HERA2 Length = 228 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 1/59 (1%) Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNS 112 AS + T ++IN ASA EL ++ +G AQ IV+YREE GPF T+E L++V G+G S Sbjct: 159 ASARQPTLININTASAAEL-ESLPKIGQAIAQRIVAYREENGPFTTIEALQEVKGIGAS 216 >UniRef50_A3CLU6 DNA uptake protein, putative n=38 Tax=Streptococcus RepID=A3CLU6_STRSV Length = 226 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 42/56 (75%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +V++N A+ EL + ++G+G K+A I++YRE G FK+V+DLK+V G+G+ +E+ Sbjct: 164 KVNLNTATEAEL-QTISGIGQKRASDIIAYRESNGRFKSVDDLKKVSGIGDKTLEK 218 >UniRef50_C2M102 ComE operon protein 1 n=1 Tax=Staphylococcus hominis SK119 RepID=C2M102_STAHO Length = 220 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 8/86 (9%) Query: 32 PTAVETKAEA-PAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSY 90 P ETK A P QS + E +V++N A+ EL G+G K + I+ Y Sbjct: 135 PNKNETKINATPTNQSNL------NTSESIKVNLNTANERELLNVP-GIGPTKVKEIIKY 187 Query: 91 REEYGPFKTVEDLKQVPGMGNSLVER 116 REE G F VEDLKQV G+G E+ Sbjct: 188 REEKGQFNNVEDLKQVRGIGGKTFEK 213 >UniRef50_Q5WY96 Putative uncharacterized protein n=4 Tax=Legionella pneumophila RepID=Q5WY96_LEGPL Length = 105 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Query: 51 PAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 PAK +G ++++N A L + G+G K+A+AI++YRE + FK++E+L +V G+G Sbjct: 29 PAKQVLVKG-KINLNTADVHSLTGSFKGIGKKRAEAIIAYRENHQGFKSLEELAEVKGIG 87 Query: 111 NSLVERN 117 V++N Sbjct: 88 QRFVDKN 94 >UniRef50_C8WHN4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WHN4_EGGLE Length = 226 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 1/53 (1%) Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 G ++ +N A+A EL A+ GVG A+ IV+ RE GPF+TVEDLK+V G+G+ Sbjct: 162 GGKIDLNRATAAEL-DALPGVGPSTAEKIVADREANGPFRTVEDLKRVSGIGD 213 >UniRef50_Q1J5X8 COME operon protein 1 n=11 Tax=Streptococcus pyogenes RepID=Q1J5X8_STRPF Length = 220 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 1/57 (1%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 ++V IN AS EEL + + G+G K+AQ I+ R++ G FK +EDL+QV G+G +E+ Sbjct: 157 SKVHINKASLEEL-QHIPGIGAKRAQDIIDMRDKLGGFKALEDLRQVSGIGEKTLEK 212 >UniRef50_D1RLV1 Competence protein ComEA helix-hairpin-helix repeat family protein n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLV1_LEGLO Length = 109 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 38/57 (66%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 ++ INNA L ++ G+G K+A+AI++YR+ + FK++E+L +V G+G V N Sbjct: 39 KIDINNADLTALTGSIKGIGTKRAEAIIAYRQTHHGFKSLEELSEVKGIGQHFVNVN 95 >UniRef50_A9ELT7 DNA-binding protein, putative n=1 Tax=Shewanella benthica KT99 RepID=A9ELT7_9GAMM Length = 105 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 2/106 (1%) Query: 19 MSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE-EGTRVSINNASAEELARAMN 77 M + ++A +A ++ A ++QSK + S + + V+IN +S +L + Sbjct: 1 MKSTLVSATLMAAIFSLSVYAGDVSSQSKTIHQKENSHQVQQLNVNINTSSIAQLV-LLK 59 Query: 78 GVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G+G KA+AIV YRE G F+ + DL V G+G LVE+N L+L Sbjct: 60 GIGESKAKAIVEYRESNGKFEVIGDLSNVKGIGPKLVEKNRMFLSL 105 >UniRef50_Q71ZI6 DNA-binding protein, ComEA family n=18 Tax=Listeria RepID=Q71ZI6_LISMF Length = 211 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 12/81 (14%) Query: 40 EAPAAQSKAAVPAKASDEEGT----RVSINNASAEELARAMNGVGLKKAQAIVSYREEYG 95 E PA Q A+ EE + ++++N+A+ ++L + + G+G KA AI+ YRE+ G Sbjct: 131 EGPATQG-------ANTEEASTGSAKINLNSATKDDLQQ-VPGIGESKATAIIEYREKEG 182 Query: 96 PFKTVEDLKQVPGMGNSLVER 116 F+T+EDLK V G+G VE+ Sbjct: 183 LFQTIEDLKNVSGIGEKTVEK 203 >UniRef50_B1HUH7 ComE operon protein 1 n=2 Tax=Bacillaceae RepID=B1HUH7_LYSSC Length = 211 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 S + ++++N A AE LA + G+G KA +I+SYREE G F+T++D++ + G+G+ Sbjct: 143 SQNKSQKINVNTADAETLA-TLPGIGPSKAHSILSYREEKGRFQTIDDVRNINGIGDKTF 201 Query: 115 ER 116 E+ Sbjct: 202 EK 203 >UniRef50_C8N8I2 Competence protein CelA n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N8I2_9GAMM Length = 158 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 V IN A+ EEL + + G+G KKA I++YRE +G FK VE+L V G+G + +E+ Sbjct: 24 VDINAANQEEL-QTLKGIGAKKAADIIAYREAHGGFKNVEELLNVKGVGKATLEK 77 >UniRef50_A5IND1 Competence protein ComEA helix-hairpin-helix repeat protein n=7 Tax=Thermotogaceae RepID=A5IND1_THEP1 Length = 181 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 E T++++N AS EEL + +G KA+AIV YRE+ GPF + EDL VPG+G +E+ Sbjct: 117 EVTKLNVNTASVEEL-ETLPYIGEMKAKAIVEYREKNGPFCSPEDLLNVPGIGEKTLEK 174 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 9/81 (11%) Query: 36 ETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYG 95 ETK E S+ V V +N AS E+L ++ G+G KAQ I+ YRE +G Sbjct: 29 ETKTEEDTTPSQKVVAFP--------VDLNTASLEDLM-SIPGIGPVKAQRIIDYRESHG 79 Query: 96 PFKTVEDLKQVPGMGNSLVER 116 F +VE+LK V G+G +E+ Sbjct: 80 GFSSVEELKNVSGIGEKTLEK 100 >UniRef50_A6LNS9 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LNS9_THEM4 Length = 184 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 S E +++INNAS EEL + + G+G KAQ I+ +R+++G ++ EDL +V G+G + Sbjct: 117 SGSEDVKININNASVEELMK-LPGIGKVKAQEIIEFRKKFGNVQSFEDLLKVKGIGKKTL 175 Query: 115 ER 116 E+ Sbjct: 176 EK 177 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 37/51 (72%), Gaps = 1/51 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNS 112 + IN+A+ E+L ++ G+G KA++I++YRE+ G F +++DL V G+G S Sbjct: 46 IDINSATFEQLV-SLPGIGPTKAKSIINYREKVGEFLSIDDLLNVSGIGPS 95 >UniRef50_A8RS55 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RS55_9CLOT Length = 293 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 RV++N AS EEL + G+G +A I+ YR+E+G FK++ED+ V G+ N+ E+ Sbjct: 232 RVNLNTASREELM-TLRGIGASRADDIIHYRQEFGGFKSIEDIMNVSGIKNAAFEK 286 >UniRef50_A6CQY2 Late competence protein (DNA binding and uptake) n=1 Tax=Bacillus sp. SG-1 RepID=A6CQY2_9BACI Length = 202 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 ++IN AS ++ + G+G KA+AI+ YR+E GPFK VE+LK V G+G + ER Sbjct: 141 LNINQASEQDF-DGLPGIGPAKAKAIIEYRKENGPFKAVEELKDVTGIGEATFER 194 >UniRef50_Q0EYL1 Late competence protein required for DNA binding and uptake n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYL1_9PROT Length = 96 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 1/57 (1%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 + V +N A+ E+L + +NG+G K A IV+YRE +GPFK+V+ L V G+G +E+ Sbjct: 26 SHVDVNTATVEQL-QTVNGIGKKTAAEIVAYREAHGPFKSVDALVHVKGIGEKKLEQ 81 >UniRef50_B4RVR3 Late competence protein (DNA binding and uptake) n=2 Tax=Alteromonas macleodii RepID=B4RVR3_ALTMD Length = 105 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 R+ +N A+ E+L + GVG KA+AI+ YREE GPF V L QV G+G ++ + Sbjct: 43 RIDLNTATVEQLV-TLPGVGQSKAKAIIKYREEVGPFLEVAQLTQVRGIGEKMLSK 97 >UniRef50_C6IZI4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZI4_9BACL Length = 170 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 40/56 (71%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 ++SIN A EL + + G+G KKA+AI+ YR +GPF ++E L +V G+G+ ++E+ Sbjct: 109 KISINRAGLAEL-QEIPGIGEKKAKAILDYRNAHGPFTSIEALTEVKGIGDKMLEK 163 >UniRef50_Q3IE25 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IE25_PSEHT Length = 99 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 ++IN A +L++ + G+G KKAQAI+ YRE G F ++EDLK V G+G L Sbjct: 39 LNINTADVSQLSK-LPGIGKKKAQAIIDYREAKGNFTSLEDLKMVKGIGKKL 89 >UniRef50_C8PFM8 Competence protein ComEA helix-hairpin-helix repeat protein (Fragment) n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PFM8_9PROT Length = 155 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 5/62 (8%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNS---LVERNL 118 V++N AS EEL A+ G+G KAQAI+ YR++ FK +ED+K + G+G+ L++ +L Sbjct: 21 VNLNTASKEELM-ALPGIGEAKAQAIIDYRKD-NKFKDIEDIKNIKGIGDKRFELIKDDL 78 Query: 119 AV 120 AV Sbjct: 79 AV 80 >UniRef50_B1I6D0 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Peptococcaceae RepID=B1I6D0_DESAP Length = 190 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 3/62 (4%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE--RN 117 +R++IN A EL R + G+G A+ I+ YRE+ GPF +V+DLK V G+G +E R+ Sbjct: 127 SRININTADRAELER-LPGIGPSLAERIIRYREQNGPFSSVDDLKNVSGIGEKRLEGLRD 185 Query: 118 LA 119 +A Sbjct: 186 MA 187 >UniRef50_UPI0001C426BA late competence operon required for DNA binding and uptake n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C426BA Length = 206 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 53 KASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNS 112 ++S+ G ++S+N AS EL + G+G KA+AI+SYREE G F++VE+L V G+G Sbjct: 136 QSSNAAGAKISLNKASQAEL-ETLPGIGPAKAEAILSYREEQGAFQSVEELMNVSGIGPK 194 Query: 113 LVERNLAVLTL 123 E+ ++T+ Sbjct: 195 SFEKLQELVTV 205 >UniRef50_D1B5R3 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5R3_THEAS Length = 235 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +V++N A EEL +++ GVG K AQAI+ YR GPF+ V+DL +V G+G +E+ Sbjct: 172 KVNVNRAGLEEL-KSLPGVGDKTAQAIIDYRTANGPFRDVKDLMKVKGIGPKKLEK 226 >UniRef50_C0WJQ2 Possible competence protein EA n=4 Tax=Corynebacterium RepID=C0WJQ2_9CORY Length = 225 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 1/52 (1%) Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 G +VS+N+A+A EL ++GVG A+AIVS+REE G FK VE+L +V G+G Sbjct: 162 GDKVSLNSATAAELTD-LSGVGEVTAEAIVSFREERGGFKDVEELLEVSGIG 212 >UniRef50_Q6M3A1 Secreted DNA uptake protein or related DNA-binding protein n=2 Tax=Corynebacterium RepID=Q6M3A1_CORGL Length = 217 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +S+N A+ +L + GVG K AQAI+ +RE G F TVEDL QV G+G S E+ Sbjct: 157 ISLNTATVADLV-TLPGVGEKTAQAIIDFRESNGGFSTVEDLLQVKGIGPSKFEQ 210 >UniRef50_C9A015 Late competence protein ComEA n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A015_ENTGA Length = 198 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 42/57 (73%), Gaps = 5/57 (8%) Query: 58 EGT----RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 EGT ++ +N A + +L + + G+G KKA+AI++YREE G FKTVE++K+V G+G Sbjct: 129 EGTLAQNQIDLNTADSSQL-QELPGIGAKKAEAIIAYREEKGFFKTVEEVKEVSGIG 184 >UniRef50_B6G1L2 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1L2_9CLOT Length = 223 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 +G V+IN A+ E+L + GVG A I++YREE G FK++EDLK V G+G+ E Sbjct: 159 QGGLVNINTATLEQL-DTLPGVGEATANKIITYREENGGFKSIEDLKNVKGIGDKKFE 215 >UniRef50_D1PKN2 Product ComEA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKN2_9FIRM Length = 119 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 39/54 (72%), Gaps = 1/54 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 ++IN A AE L + G+G KA+AI+++RE +GPF T+ DL+QV G+ + ++E Sbjct: 51 ININLADAETLMM-LPGIGPAKAEAILAWREAHGPFSTLMDLEQVSGISSGMIE 103 >UniRef50_Q080A1 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q080A1_SHEFN Length = 112 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 1/57 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 +V+IN ASA EL +A+ G+G KA+AIV YR + G F ++ L V G+G LV +N Sbjct: 51 KVNINKASAVEL-QALKGIGQAKAKAIVDYRTKNGKFTDLKQLTMVTGIGEKLVSQN 106 >UniRef50_Q1AVU6 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVU6_RUBXD Length = 107 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 38/55 (69%), Gaps = 1/55 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 V IN A AEEL + VG A+AI+ YR GPF+TVE+L++VPG+G + +E+ Sbjct: 47 VDINTADAEELEE-LPEVGPATAEAIIEYRLANGPFRTVEELEEVPGIGPATLEQ 100 >UniRef50_A0JX55 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Arthrobacter sp. FB24 RepID=A0JX55_ARTS2 Length = 326 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 EG ++ +N+ASAEEL A+ VG AQ IV +R+E+G F TVE+L V G+G ++E Sbjct: 261 EGGKIDLNSASAEELG-ALPRVGPVLAQRIVDWRKEHGRFSTVEELDAVDGVGPKMLETL 319 Query: 118 LAVLTL 123 L ++ + Sbjct: 320 LPLVRV 325 >UniRef50_D2RL62 Soluble ligand binding domain protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RL62_ACIFE Length = 215 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 2/65 (3%) Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 + ++++ R+++N A EEL R + G+G A+ IV YR++ PF+ VEDL+QV G+G Sbjct: 146 GRGTEKDNRRINLNRAGEEELTR-LPGIGPALARRIVEYRQQ-APFRRVEDLQQVSGIGP 203 Query: 112 SLVER 116 S +R Sbjct: 204 SKFQR 208 >UniRef50_C8WQ77 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQ77_ALIAD Length = 301 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 G +++IN A E L + GVG K+A AI++YR+ +GPF+ +E L+ V G+G + + Sbjct: 224 GQKININTADLETL-ETLPGVGPKRAAAILAYRQAHGPFRDLESLRHVKGIGEKTLAKWK 282 Query: 119 AVLTL 123 ++T Sbjct: 283 DLITF 287 >UniRef50_A8RCA6 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCA6_9FIRM Length = 155 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 2/62 (3%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 +SIN+AS EEL + GVG AQ I+ YR + PFKT+E+LK V G+G+ + E+ + Sbjct: 96 ISINSASLEELDE-LKGVGPSIAQRIIDYRNQQ-PFKTLEELKNVKGIGDRMFEKIKGQI 153 Query: 122 TL 123 TL Sbjct: 154 TL 155 >UniRef50_Q3SI14 Competence protein ComEA n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SI14_THIDA Length = 89 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN A+ EL A+ GVG KA+AI+SYR+ G FK+V++L +V G G + VE+ L Sbjct: 22 VNINTATQSEL-EAIRGVGPAKAKAIISYRDANGAFKSVQELDKVKGFGKASVEKLQGEL 80 Query: 122 TL 123 T+ Sbjct: 81 TV 82 >UniRef50_A5KJM8 Putative uncharacterized protein n=2 Tax=Ruminococcus RepID=A5KJM8_9FIRM Length = 225 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 37/49 (75%), Gaps = 1/49 (2%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 +++IN A EEL + GVG KAQ+I++YREE+G F+++E+L Q+ G+ Sbjct: 164 KININTAEKEELM-TLTGVGEAKAQSIIAYREEHGGFQSIEELMQIEGI 211 >UniRef50_A9WII9 Helix-hairpin-helix motif n=2 Tax=Chloroflexus RepID=A9WII9_CHLAA Length = 245 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 8/87 (9%) Query: 38 KAEAPAAQSKAAVPAKASDEEGTR---VSINNASAEELARAMNGVGLKKAQAIVSYREEY 94 + E+P A++ A + EGT V IN A E L A+ G+G A I++YRE + Sbjct: 154 EVESPIAETGRAEEKEEVSAEGTELAPVDINRADRETLI-ALPGIGPVLADRIIAYREAH 212 Query: 95 GPFKTVEDLKQVPGMGNSLVERNLAVL 121 GPFK+V+DL + G+G ERN+ + Sbjct: 213 GPFKSVDDLTAISGIG----ERNINIF 235 >UniRef50_A8Z4C9 Possible competence protein comEA n=52 Tax=Staphylococcus aureus RepID=A8Z4C9_STAAT Length = 228 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 49 AVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 +V K + T+V++N AS EL ++ GVG KA AIV YR + G F+ ++DLK+V G Sbjct: 155 SVHEKNGNTNNTKVNLNTASVSELM-SVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKG 213 Query: 109 MGNSLVER 116 G+ ++ Sbjct: 214 FGSKTFDK 221 >UniRef50_C2ERZ4 Competence protein comEA n=1 Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2ERZ4_9LACO Length = 215 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 V++N A+ E+L + + G+G KKA I+ YR+E+G F +V+DLK + G G V + Sbjct: 155 VNLNTATKEQLCK-ITGIGDKKADLILQYRQEHGSFNSVDDLKNINGFGEKTVTK 208 >UniRef50_Q3CZ73 Competence protein CelA (Fragment) n=4 Tax=Streptococcus RepID=Q3CZ73_STRAG Length = 178 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 ++++N A L + ++GVG K+AQ I+ YR+ G FKT++DLK V G+G +E+ Sbjct: 116 KINLNKADLSSL-QTISGVGAKRAQDILDYRDSQGGFKTIDDLKNVSGIGEKTLEK 170 >UniRef50_A7VCH8 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VCH8_9CLOT Length = 231 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 E+ ++ IN A E+L ++G+G KA++I+ YR E+G F +ED+ V G+G SL ++ Sbjct: 165 EQSQKIDINTADKEQLM-TLSGIGEAKAESIIRYRAEHGNFAQIEDITNVDGIGESLFQK 223 >UniRef50_B3PII0 Integral membrane protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PII0_CELJU Length = 102 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 3/86 (3%) Query: 40 EAPAAQSKAAVPAK--ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPF 97 ++ A S +PA +++ + ++IN A L + + G+G KKA+AI+++R G F Sbjct: 18 QSIAIASDTQIPANKPVAEQAHSLININTADVATLTQ-LKGIGTKKAEAIIAWRNANGKF 76 Query: 98 KTVEDLKQVPGMGNSLVERNLAVLTL 123 KT+E L V G+G + E N A L++ Sbjct: 77 KTIEQLMDVKGIGEATFEANRAKLSI 102 >UniRef50_A9WS83 Competence protein n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WS83_RENSM Length = 268 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 4/95 (4%) Query: 32 PTAVETKA-EAPAAQSKAAVP--AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIV 88 PT + +A + PA + AA P + +S +V+IN AS ++LA + VG K AQ IV Sbjct: 175 PTQAQIEAGQVPATTTGAASPNASNSSKFPAAKVNINAASVDQLAE-LPKVGPKMAQKIV 233 Query: 89 SYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +R ++G F ++DL + G+G L++ A++T+ Sbjct: 234 QWRAQHGKFSAIDDLDAIDGIGPKLLDSLRALVTI 268 >UniRef50_C0W2X2 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W2X2_9ACTO Length = 253 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 G +++N A A L + G+G A+ IVS+RE +GPF TVEDL VPG+G + +E Sbjct: 190 GGLINLNTADAAAL-EDLPGIGPALAERIVSHRESHGPFATVEDLLDVPGIGQAKLE 245 >UniRef50_A6BGR9 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BGR9_9FIRM Length = 255 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 15/96 (15%) Query: 35 VETKAEAPAAQSKAAVPAKASDEEGT--------------RVSINNASAEELARAMNGVG 80 V TK EA A + +D E T +V IN A +EL ++G+G Sbjct: 154 VPTKEEAKAGTENNGTFVQNADNEKTDATKSTDAGSTADGKVDINTAGKDELM-TLSGIG 212 Query: 81 LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 KA AI+ YR+E+G F+ +EDL +V G+ + + ++ Sbjct: 213 EAKADAIIRYRDEHGKFQKIEDLMEVEGIKDGVFQK 248 >UniRef50_A1R6X3 Putative comEA protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R6X3_ARTAT Length = 276 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 1/55 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 +V+IN AS EEL + VG AQ I+ +R+E+GPF +VE+L V G+G L+E Sbjct: 212 KVNINTASLEELG-TLPRVGPVTAQGIIDWRKEHGPFASVEELDAVDGIGPKLME 265 >UniRef50_C5EZQ6 Competence protein ComEA (Fragment) n=1 Tax=Helicobacter pullorum MIT 98-5489 RepID=C5EZQ6_9HELI Length = 94 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 2/55 (3%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 V +N AS EEL ++ G+G KAQAI+ YRE+ P K+++DLK + G G ++E+ Sbjct: 32 VDLNKASKEELM-SIKGIGEAKAQAIIDYREK-TPLKSIDDLKNIKGFGPKIIEK 84 >UniRef50_C7MNJ1 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNJ1_CRYCD Length = 255 Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 1/50 (2%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 +V+IN A A EL ++ GVG AQ I++YR+ G F T EDLKQV G+G Sbjct: 194 KVNINTADANELC-SLPGVGQSTAQKIITYRQTEGRFATKEDLKQVSGIG 242 >UniRef50_C5NY25 ComE operon protein 1 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NY25_9BACL Length = 210 Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 ++IN A+ E L + ++GVG KA+AI+SYRE+ G FK ED+ +V G+G + E+ Sbjct: 150 ININTANKERLMK-ISGVGKTKAEAIISYREKNGDFKKKEDITKVHGIGKATFEK 203 >UniRef50_Q67SA3 Putative DNA-binding protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67SA3_SYMTH Length = 230 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 39/57 (68%), Gaps = 1/57 (1%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 T V+IN A EL + G+G A+AI++YR E+GPF++V+DL V G+G+ +E+ Sbjct: 168 TLVNINTAGQAEL-ETVPGIGPALARAIITYRTEHGPFQSVDDLINVSGIGSKTLEK 223 >UniRef50_Q3A6K8 DNA uptake/competence protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A6K8_PELCD Length = 128 Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%) Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 A AS+ T VS+N+A+A++L + + G+G A IV+YR+ +GPF VEDL V G+G Sbjct: 57 ATASEIATTAVSLNSATAKQL-QILPGIGAVTADRIVAYRKAHGPFANVEDLLHVKGIG 114 >UniRef50_B0ADP5 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ADP5_9CLOT Length = 236 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 SD +G++++IN A ++L + GVG A I+SYR+E G FK++E++K V G+G+ Sbjct: 168 SDSQGSKININTADLKQLDD-IPGVGEATANKILSYRDENGEFKSIEEIKNVNGIGDKKF 226 Query: 115 ER 116 E Sbjct: 227 EN 228 >UniRef50_Q1QVK1 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVK1_CHRSD Length = 90 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 1/53 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 + IN+A+AE LA + G+G KAQAIV RE GPF ++EDL +V G+G V Sbjct: 30 IDINHATAETLAE-LPGIGEVKAQAIVEDREANGPFASLEDLTRVSGIGEGTV 81 >UniRef50_D2SCU5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SCU5_9ACTO Length = 278 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNS 112 V +N A+A +L A+ G+G AQ IV +RE GPF+TVE L VPG+G + Sbjct: 218 VDLNAATAPDLD-ALPGIGPVLAQRIVEHRERNGPFRTVEQLDDVPGIGPT 267 >UniRef50_A9KCS9 COME operon protein 1 n=6 Tax=Coxiella burnetii RepID=A9KCS9_COXBN Length = 123 Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 A S ++ V IN A A L + G+G+KKA+AI++YR++ G FK++E L VPG+ Sbjct: 47 AAVSTQKTGPVDINTADATLLT-TLKGIGVKKAKAIIAYRKKEGNFKSIEALSSVPGISQ 105 Query: 112 SLVER 116 V R Sbjct: 106 KTVAR 110 >UniRef50_B9CKK4 Competence protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CKK4_9ACTN Length = 241 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 8/109 (7%) Query: 15 ACAGMSHSA-LAAASVAKPTA------VETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 A G S +A ++ ++AKP V + E S+ +V + + E + V+IN A Sbjct: 126 AAGGPSDTADISELNLAKPIKDGDKIHVPQEGEKQVPSSENSVEPSSKNSEQSLVNINVA 185 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 + EEL + + GVG AQAIV R++ GPF EDL +V G+G ER Sbjct: 186 TEEELTK-LPGVGKSMAQAIVKDRDKNGPFIKAEDLMRVSGIGEKKFER 233 >UniRef50_C9LCS3 Competence protein CelA n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LCS3_RUMHA Length = 201 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 1/53 (1%) Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 E G +++IN A EL + + GVG KKAQ+I+ YRE G F+ +E L++VPG+ Sbjct: 135 ESGGKININTADLTEL-QEIPGVGEKKAQSIMEYREACGGFQNIEQLQEVPGI 186 >UniRef50_Q2RKY9 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKY9_MOOTA Length = 224 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 +S G +V+IN A EL ++ G+G AQ I+ YR + GPF+T+EDL+ V G+G Sbjct: 155 SSSRTGGKVNINTAGLAEL-DSLPGIGPTLAQRILDYRTQKGPFRTIEDLQNVSGIG 210 >UniRef50_Q15QY4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15QY4_PSEA6 Length = 102 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 5/76 (6%) Query: 41 APAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTV 100 A A K++V K S ++++N A+AE+L + G+G KKA AI++YR++ G F + Sbjct: 24 AEAKVDKSSVTQKKSQ----KINLNTATAEQLV-TLPGIGKKKAAAIIAYRDKSGKFAKI 78 Query: 101 EDLKQVPGMGNSLVER 116 DL V G+G +V + Sbjct: 79 SDLTNVKGIGKKMVAK 94 >UniRef50_C0D545 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D545_9CLOT Length = 243 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +V+IN A EEL + G+G KA+ I+ YRE YGPF+ +ED+ + G+ ++ ++ Sbjct: 182 KVNINTAGKEELM-TLKGIGESKAEDIIRYRETYGPFERIEDIMNISGIKDAAFQK 236 >UniRef50_C6JE10 DNA uptake protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JE10_9FIRM Length = 274 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 ++ R++IN A +L + G+G +AQAI++YREE GPF +ED+ V G+ Sbjct: 208 QQDNRININTADEAQLT-TLTGIGATRAQAIIAYREENGPFAAIEDIMNVQGI 259 >UniRef50_Q1JY69 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JY69_DESAC Length = 89 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 GT V+IN A+ E+L +++NG+G K A+ IV+YR +G + +V+ L + G+G Sbjct: 25 GTAVNINTATVEQL-QSVNGIGQKTAEKIVAYRTSHGTYSSVDQLCNIKGIG 75 >UniRef50_D2BL64 ComE operon protein 1 n=4 Tax=Lactococcus lactis RepID=D2BL64_LACLK Length = 215 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +++IN A EL + + GVG KKAQ I+ +R + G F ++EDL +V G G+ +E+ Sbjct: 153 KININQADVTELQK-LTGVGQKKAQDIIDFRTKNGDFISLEDLGKVSGFGDKTLEK 207 >UniRef50_D1VU74 Late competence protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VU74_9FIRM Length = 204 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 11/123 (8%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA-------AVPAK 53 +K+G + L+ +SLA + L + ++AK + E K A + AK Sbjct: 78 LKNGDR-LVDAISLAGGARDDADLDSCNLAKKLSDEDKIYIKTFDESADNNFNIDSSTAK 136 Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 A +++N+AS +EL + + GVG K A I+ YRE++ FK+VEDLK V G+G+ Sbjct: 137 AI-SSNILINLNSASKDELMK-IPGVGPKTADKIIDYREKF-QFKSVEDLKNVDGIGDKK 193 Query: 114 VER 116 E+ Sbjct: 194 FEK 196 >UniRef50_C7N574 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N574_SLAHD Length = 243 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 1/50 (2%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 +V+IN A A EL + ++G+G A+AIV RE GPF +VEDL++V G+G Sbjct: 182 KVNINTADASELQQ-LSGIGPATAEAIVKDREANGPFASVEDLQRVSGIG 230 >UniRef50_C2D6C0 Possible competence protein ComEA family protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6C0_9ACTN Length = 277 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +S+N AS EL + GVG A I++ R E+GPFK VEDLK+V G+G+ E+ Sbjct: 217 ISLNKASKNELLE-LPGVGPAMADRIIADRREHGPFKHVEDLKRVKGIGSKKFEK 270 >UniRef50_D2MPX9 ComEA protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MPX9_9FIRM Length = 151 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 1/56 (1%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 +++S+N A +EL + + GVG K AQ I+ YR+E G F+ +EDL++V G+G+ E Sbjct: 89 SKISLNEADLKELMK-LKGVGKKMAQRILEYRKEKGLFQKLEDLQKVKGIGDKKYE 143 >UniRef50_A4BM59 Unspecific high-affinity DNA-binding protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BM59_9GAMM Length = 105 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 1/59 (1%) Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 G +++IN A + L + ++GVG KAQAIV+YRE G F+ + DL +V G+G ++ N Sbjct: 41 GAKININKAGVQTL-QELDGVGPSKAQAIVTYRERNGRFQALTDLTKVRGIGEQTLDAN 98 >UniRef50_C5CHC5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CHC5_KOSOT Length = 264 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 49 AVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 A +KA + TR+ +N AS +L ++ G+G KA IV YREE+G FK +++L V G Sbjct: 114 AAKSKAENTRDTRLDLNTASKVDLT-SLPGIGEVKAAEIVKYREEHGGFKAIDELINVKG 172 Query: 109 MGNSLVE--RNLA 119 +G + ++ RNL Sbjct: 173 IGRATLDKIRNLV 185 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 + +N A+ E L + + G+G +A+AIV++RE G F + E+L QV G+GNS E+ Sbjct: 51 IDLNTATVEIL-QLLPGIGETRAKAIVTFRESNGGFSSTEELLQVKGIGNSTYEK 104 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 3/61 (4%) Query: 50 VPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 VP K+ E ++++N A+ +EL A+ G+G A+ I+ YRE G F EDL +V G+ Sbjct: 194 VPDKS--ENSGKINVNTATLQELV-ALPGIGPVLAERIIDYREHNGKFHKPEDLLKVSGI 250 Query: 110 G 110 G Sbjct: 251 G 251 >UniRef50_C1D6Y6 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6Y6_LARHH Length = 99 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V +N+A+ +L + G+G KA+AI+ YR++ GPFKT++DL +V G G +++ A L Sbjct: 21 VDVNSATQAQL-EDVKGLGPVKAKAIIDYRQKNGPFKTLDDLDKVEGFGRKSIDKLRAEL 79 Query: 122 TL 123 ++ Sbjct: 80 SI 81 >UniRef50_UPI0001C358FF helix-hairpin-helix repeat-containing competence protein ComEA n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C358FF Length = 255 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 39/56 (69%), Gaps = 1/56 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +V++N A+ EEL + G+G KA I++YRE +G F+ +ED+K++ G+ N+ E+ Sbjct: 194 KVNLNTATREELM-TLKGIGEAKADDIIAYRESHGGFQKIEDIKKISGIKNAAFEK 248 >UniRef50_D0ME87 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0ME87_RHOM4 Length = 131 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 36/49 (73%), Gaps = 1/49 (2%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 +++N A+AEEL R + +G A+ I+ YRE +GPF+ +E+L+ VPG+G Sbjct: 70 LNVNTATAEELER-LPRIGPVLARRIIEYREAHGPFRRIEELEAVPGIG 117 >UniRef50_C7GEH7 ComE operon protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEH7_9FIRM Length = 219 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 40 EAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKT 99 E +++ V + + + R+ +N A+A EL ++G+G KA +I+ YRE+ G F + Sbjct: 136 EEAGERTETGVDGETAQDSDGRIDLNLATAAELM-TLSGIGQTKADSIIRYREKNGSFSS 194 Query: 100 VEDLKQVPGMGNSLVER 116 VE++KQV G+ + R Sbjct: 195 VEEIKQVEGIKEGVYNR 211 >UniRef50_D0WN87 Competence protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN87_9ACTO Length = 380 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 36/49 (73%), Gaps = 1/49 (2%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 V++N A AEEL + + GVG A+AI+++REE G F++V+DL V G+G Sbjct: 320 VNVNTAGAEEL-QTLPGVGPATAKAIIAWREENGRFRSVDDLLDVSGIG 367 >UniRef50_A9KHN6 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KHN6_CLOPH Length = 238 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 5/93 (5%) Query: 35 VETKAEAPAAQSKAAVP-AKASDEEG---TRVSINNASAEELARAMNGVGLKKAQAIVSY 90 VET ++ A+ + P K ++E T+V+IN A+ EEL + G+G KA +I+SY Sbjct: 145 VETLSDVEIAEVVFSNPTGKEKNDESSNKTKVNINKATKEELM-TIPGIGEAKALSIISY 203 Query: 91 REEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 R E+G F T+E+L+ + G+ +++ R +T+ Sbjct: 204 RTEHGLFSTIEELQNISGIKSAVFNRMKDFITV 236 >UniRef50_C2L1I3 Possible helix-hairpin-helix repeat-containing competence protein ComEA n=1 Tax=Oribacterium sinus F0268 RepID=C2L1I3_9FIRM Length = 218 Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 40/59 (67%), Gaps = 1/59 (1%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 E +++IN A+ +EL ++ G+G A+ I+ YREEYG F ++E++K V +G+ + E+ Sbjct: 154 EEKKININTATEQEL-ESLKGIGPATAKNIIRYREEYGGFSSIEEIKNVKRIGDKIFEK 211 >UniRef50_C6MZI0 Putative uncharacterized protein n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MZI0_9GAMM Length = 107 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 4/74 (5%) Query: 48 AAVPAKASDEEG----TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 +A P KA +++ ++ +N A A L + G+G K+A AI++YR+ + FK++E+L Sbjct: 23 SASPKKAPEKQTVVATNKIDLNKADASSLTGSFKGIGKKRADAIIAYRDSHQGFKSIEEL 82 Query: 104 KQVPGMGNSLVERN 117 +V G+G + N Sbjct: 83 AEVKGIGQHFMAAN 96 >UniRef50_A8VU71 HAD superfamily (Subfamily IIIA) phosphatase, TIGR01668 n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VU71_9BACI Length = 226 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 36/64 (56%) Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 A A+ EE + N S + G+G KA AI+ YR+E+GPF E+L QVPG+G+ Sbjct: 149 AWATMEEDDGLVCLNGSDHAALETLPGIGPAKAAAIIQYRDEHGPFTNEEELVQVPGIGD 208 Query: 112 SLVE 115 E Sbjct: 209 KTFE 212 >UniRef50_C7R5D7 Helix-hairpin-helix DNA-binding class 1 n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R5D7_JONDD Length = 261 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 35 VETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEY 94 V K + P + P+ A E ++IN A++E+L + + G+G AQ I+ R + Sbjct: 173 VPHKDDDPPVNVPSPTPSTAP--ETGPININTATSEDL-QTLPGIGPALAQRIIDDRTTH 229 Query: 95 GPFKTVEDLKQVPGMGNSLVERNLAVLT 122 GPF TV L +V G+G +++E LT Sbjct: 230 GPFPTVHSLDRVRGIGPTILENLTPHLT 257 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AAR8 Uncharacterized protein ybaV n=69 Tax=Enterobact... 165 3e-40 UniRef50_A7ZIK0 Competence protein ComEA n=33 Tax=Enterobacteria... 165 4e-40 UniRef50_A4W7B3 Competence protein ComEA helix-hairpin-helix rep... 132 3e-30 UniRef50_C6RS77 Competence protein, ComEA helix-hairpin-helix re... 123 2e-27 UniRef50_B0K405 Competence protein ComEA helix-hairpin-helix rep... 121 6e-27 UniRef50_Q65RQ5 ComEA protein n=2 Tax=Pasteurellaceae RepID=Q65R... 121 9e-27 UniRef50_B5YE67 ComEA protein n=1 Tax=Dictyoglomus thermophilum ... 118 5e-26 UniRef50_B8E2A5 Competence protein ComEA helix-hairpin-helix rep... 117 9e-26 UniRef50_C6CQU2 Competence protein ComEA helix-hairpin-helix rep... 114 7e-25 UniRef50_Q88LW4 ComEA-related protein n=4 Tax=Pseudomonas RepID=... 114 7e-25 UniRef50_Q0AWK6 Competence protein ComEA helix-hairpin-helix reg... 114 1e-24 UniRef50_Q6F851 Putative DNA uptake protein and/or related DNA-b... 114 1e-24 UniRef50_Q3AF21 Competence protein n=1 Tax=Carboxydothermus hydr... 113 1e-24 UniRef50_B0VFU5 Putative ComEA protein-related protein n=1 Tax=C... 113 1e-24 UniRef50_C9RUW2 Competence protein ComEA helix-hairpin-helix rep... 113 2e-24 UniRef50_C2E8F5 Competence protein ComEA n=1 Tax=Lactobacillus r... 112 4e-24 UniRef50_C9CQC8 DNA-binding protein n=3 Tax=Enterococcus casseli... 112 4e-24 UniRef50_Q7N0L8 Similar to unknown protein YbaV of Escherichia c... 111 5e-24 UniRef50_A3N254 DNA uptake protein n=5 Tax=Pasteurellaceae RepID... 111 6e-24 UniRef50_B7GKB3 Late competence protein ComEA (DNA binding and u... 111 7e-24 UniRef50_C0VPS9 DNA uptake protein n=2 Tax=Acinetobacter RepID=C... 111 8e-24 UniRef50_A0KYK0 Competence protein ComEA helix-hairpin-helix rep... 111 8e-24 UniRef50_C0GEP7 Competence protein ComEA helix-hairpin-helix rep... 111 9e-24 UniRef50_B7H014 ComE1 n=11 Tax=Acinetobacter RepID=B7H014_ACIB3 111 1e-23 UniRef50_A8GAR4 Competence protein ComEA helix-hairpin-helix rep... 110 1e-23 UniRef50_A5N6K8 Predicted DNA-binding competence protein n=14 Ta... 110 1e-23 UniRef50_B9CKK4 Competence protein n=1 Tax=Atopobium rimae ATCC ... 110 1e-23 UniRef50_Q4L6U1 Similar to late competence operon protein requir... 109 2e-23 UniRef50_D2NT61 DNA uptake protein n=2 Tax=Rothia mucilaginosa R... 109 2e-23 UniRef50_C4FWP5 Putative uncharacterized protein n=1 Tax=Catonel... 109 2e-23 UniRef50_B9MRQ3 Competence protein ComEA helix-hairpin-helix rep... 109 2e-23 UniRef50_B1I6D0 Competence protein ComEA helix-hairpin-helix rep... 109 2e-23 UniRef50_A4XKH1 Competence protein ComEA helix-hairpin-helix rep... 109 2e-23 UniRef50_A7VCH8 Putative uncharacterized protein n=1 Tax=Clostri... 109 3e-23 UniRef50_A7NJW3 Competence protein ComEA helix-hairpin-helix rep... 108 5e-23 UniRef50_C0X8I1 Competence protein comEA n=22 Tax=Enterococcus f... 108 6e-23 UniRef50_Q70T35 ComEA protein n=2 Tax=Bacillus RepID=Q70T35_BACME 108 6e-23 UniRef50_A7HNQ6 Competence protein ComEA helix-hairpin-helix rep... 108 7e-23 UniRef50_C9R8F1 Competence protein ComEA helix-hairpin-helix rep... 108 7e-23 UniRef50_A5IND1 Competence protein ComEA helix-hairpin-helix rep... 108 9e-23 UniRef50_B7VAN0 Putative competence protein n=6 Tax=Pseudomonas ... 107 1e-22 UniRef50_C1TL78 Competence protein ComEA-like protein with helix... 107 1e-22 UniRef50_C0CK25 Putative uncharacterized protein n=1 Tax=Blautia... 107 1e-22 UniRef50_C6A7M7 Putative DNA-binding protein n=4 Tax=Bifidobacte... 107 1e-22 UniRef50_A6CQY2 Late competence protein (DNA binding and uptake)... 107 1e-22 UniRef50_A6NW57 Putative uncharacterized protein n=1 Tax=Bactero... 106 2e-22 UniRef50_C0ZB15 Putative uncharacterized protein n=1 Tax=Breviba... 106 2e-22 UniRef50_A8Z4C9 Possible competence protein comEA n=52 Tax=Staph... 106 3e-22 UniRef50_D2TWD1 Competence protein n=1 Tax=Arsenophonus nasoniae... 106 3e-22 UniRef50_B2GBB2 Competence protein n=4 Tax=Lactobacillus RepID=B... 106 3e-22 UniRef50_C5EH62 Putative uncharacterized protein n=1 Tax=Clostri... 106 3e-22 UniRef50_B6FJL2 Putative uncharacterized protein n=1 Tax=Clostri... 106 3e-22 UniRef50_Q38WQ9 Putative bacterial type II secretion/competence ... 106 3e-22 UniRef50_B0G876 Putative uncharacterized protein n=2 Tax=Clostri... 106 3e-22 UniRef50_P39694 ComE operon protein 1 n=3 Tax=Bacillus RepID=COM... 105 3e-22 UniRef50_Q9CKF6 Putative uncharacterized protein n=1 Tax=Pasteur... 105 3e-22 UniRef50_Q65H41 ComEA n=6 Tax=Bacillus RepID=Q65H41_BACLD 105 4e-22 UniRef50_A8FTJ9 Competence protein ComEA helix-hairpin-helix rep... 105 4e-22 UniRef50_Q67SA3 Putative DNA-binding protein n=1 Tax=Symbiobacte... 105 4e-22 UniRef50_D1VU74 Late competence protein n=1 Tax=Peptoniphilus la... 105 4e-22 UniRef50_B1HUH7 ComE operon protein 1 n=2 Tax=Bacillaceae RepID=... 105 5e-22 UniRef50_A8FFE5 Competence protein EA n=2 Tax=Bacillus pumilus R... 105 5e-22 UniRef50_C5VAZ4 Competence protein, ComEA helix-hairpin-helix re... 105 5e-22 UniRef50_D1BUZ0 Competence protein ComEA helix-hairpin-helix rep... 105 6e-22 UniRef50_C5QSY0 Competence protein comEA n=1 Tax=Staphylococcus ... 104 6e-22 UniRef50_C8PAT3 Competence protein CelA n=1 Tax=Lactobacillus in... 104 6e-22 UniRef50_D1CCQ9 Competence protein ComEA helix-hairpin-helix rep... 104 7e-22 UniRef50_Q9KD84 Late competence operon required for DNA binding ... 104 8e-22 UniRef50_B6XA89 Putative uncharacterized protein n=3 Tax=Provide... 104 9e-22 UniRef50_Q57134 Uncharacterized protein HI1008 n=20 Tax=Pasteure... 104 1e-21 UniRef50_Q3XYU3 Competence protein ComEA helix-hairpin-helix reg... 104 1e-21 UniRef50_Q8XIJ9 ComE operon protein n=10 Tax=Firmicutes RepID=Q8... 104 1e-21 UniRef50_C7R5D7 Helix-hairpin-helix DNA-binding class 1 n=1 Tax=... 104 1e-21 UniRef50_Q2RKY9 Competence protein ComEA helix-hairpin-helix reg... 104 1e-21 UniRef50_Q5LYL1 Late competence protein required for DNA binding... 104 1e-21 UniRef50_Q1WU47 ComE operon protein 1 n=2 Tax=Lactobacillus sali... 103 1e-21 UniRef50_UPI00016BFF02 late competence protein (DNA binding and ... 103 1e-21 UniRef50_UPI0001C426BA late competence operon required for DNA b... 103 2e-21 UniRef50_C8NGS6 Competence protein ComEA n=1 Tax=Granulicatella ... 103 2e-21 UniRef50_D0LIE3 Competence protein ComEA helix-hairpin-helix rep... 103 2e-21 UniRef50_B5EQJ4 Competence protein ComEA helix-hairpin-helix rep... 103 2e-21 UniRef50_A1R6X3 Putative comEA protein n=1 Tax=Arthrobacter aure... 103 2e-21 UniRef50_A7BWU4 Competence protein ComEA helix-hairpin-helix rep... 103 2e-21 UniRef50_Q4ZQA5 Competence protein ComEA helix-hairpin-helix reg... 103 2e-21 UniRef50_C2AU83 Competence protein ComEA-like protein with helix... 103 2e-21 UniRef50_A1HQZ8 Competence protein ComEA helix-hairpin-helix rep... 103 2e-21 UniRef50_C4V2X7 Competence protein ComEA helix-hairpin-helix rep... 103 3e-21 UniRef50_Q5WHH4 Late competence protein ComEA n=1 Tax=Bacillus c... 103 3e-21 UniRef50_C0W2X2 Competence protein ComEA helix-hairpin-helix rep... 102 3e-21 UniRef50_C8WQ77 Competence protein ComEA helix-hairpin-helix rep... 102 3e-21 UniRef50_B8KX36 Competence protein ComEA helix-hairpin-helix rep... 102 3e-21 UniRef50_C7GZM9 Competence protein CelA n=1 Tax=Eubacterium saph... 102 3e-21 UniRef50_C5BCK2 Putative uncharacterized protein n=2 Tax=Edwards... 102 4e-21 UniRef50_A5WC41 Competence protein ComEA helix-hairpin-helix rep... 102 4e-21 UniRef50_B5Y881 ComEA protein n=1 Tax=Coprothermobacter proteoly... 102 4e-21 UniRef50_Q03VU1 DNA uptake protein related DNA-binding protein n... 102 5e-21 UniRef50_Q8EPV5 Late competence protein (DNA binding and uptake)... 101 5e-21 UniRef50_D2LT80 Competence protein ComEA helix-hairpin-helix rep... 101 5e-21 UniRef50_UPI0001C358FF helix-hairpin-helix repeat-containing com... 101 5e-21 UniRef50_C4U1C4 Competence protein ComEA helix-hairpin-helix rep... 101 5e-21 UniRef50_C1DEM9 ComEA-related protein n=3 Tax=Pseudomonadaceae R... 101 6e-21 UniRef50_C4UHG5 Putative uncharacterized protein n=1 Tax=Yersini... 101 6e-21 UniRef50_Q03QM7 DNA uptake protein related DNA-binding protein n... 101 7e-21 UniRef50_D0ME87 Competence protein ComEA helix-hairpin-helix rep... 101 7e-21 UniRef50_C9LCS3 Competence protein CelA n=1 Tax=Blautia hansenii... 101 7e-21 UniRef50_UPI000178992B competence protein ComEA helix-hairpin-he... 101 7e-21 UniRef50_A4Y5K0 Competence protein ComEA helix-hairpin-helix rep... 101 8e-21 UniRef50_C0D545 Putative uncharacterized protein n=2 Tax=Clostri... 101 8e-21 UniRef50_C9KN34 Competence protein n=3 Tax=Veillonellaceae RepID... 101 9e-21 UniRef50_A0Z742 Putative uncharacterized protein n=1 Tax=marine ... 101 9e-21 UniRef50_C5RDZ4 Competence protein ComEA helix-hairpin-helix rep... 101 9e-21 UniRef50_A4AAS4 Putative uncharacterized protein n=1 Tax=Congreg... 101 9e-21 UniRef50_Q71ZI6 DNA-binding protein, ComEA family n=18 Tax=Liste... 101 1e-20 UniRef50_A4J7G9 Competence protein ComEA helix-hairpin-helix rep... 101 1e-20 UniRef50_Q1AVU6 Competence protein ComEA helix-hairpin-helix reg... 101 1e-20 UniRef50_A9B5P5 Competence protein ComEA helix-hairpin-helix rep... 100 1e-20 UniRef50_C1PB54 Competence protein ComEA helix-hairpin-helix rep... 100 1e-20 UniRef50_B2K6W2 Competence protein ComEA helix-hairpin-helix rep... 100 1e-20 UniRef50_C2LN90 Competence protein ComEA helix-hairpin-helix rep... 100 1e-20 UniRef50_A4EC57 Putative uncharacterized protein n=1 Tax=Collins... 100 1e-20 UniRef50_A3DET3 Competence protein ComEA helix-hairpin-helix rep... 100 1e-20 UniRef50_UPI0001C4262A putative S-layer protein n=1 Tax=Bacillus... 100 1e-20 UniRef50_B5JRK5 Putative uncharacterized protein n=1 Tax=gamma p... 100 1e-20 UniRef50_C2KND1 Possible helix-hairpin-helix repeat-containing c... 100 2e-20 UniRef50_D1B5R3 Competence protein ComEA helix-hairpin-helix rep... 100 2e-20 UniRef50_B8H8S8 Competence protein ComEA helix-hairpin-helix rep... 100 2e-20 UniRef50_A5KJM8 Putative uncharacterized protein n=2 Tax=Ruminoc... 99 2e-20 UniRef50_B5CMB0 Putative uncharacterized protein n=1 Tax=Ruminoc... 99 2e-20 UniRef50_A6WDK9 Competence protein ComEA helix-hairpin-helix rep... 99 2e-20 UniRef50_A9ELT7 DNA-binding protein, putative n=1 Tax=Shewanella... 99 2e-20 UniRef50_Q2SJI1 DNA uptake protein and related DNA-binding prote... 100 2e-20 UniRef50_B6G1L2 Putative uncharacterized protein n=1 Tax=Clostri... 100 3e-20 UniRef50_A5ZYC6 Putative uncharacterized protein n=1 Tax=Ruminoc... 100 3e-20 UniRef50_C3NPA2 DNA uptake protein n=34 Tax=Vibrionaceae RepID=C... 100 3e-20 UniRef50_B2Q709 Putative uncharacterized protein n=1 Tax=Provide... 100 3e-20 UniRef50_Q1N619 DNA uptake protein and related DNA-binding prote... 99 3e-20 UniRef50_C5BSJ6 DNA uptake protein ComEA n=1 Tax=Teredinibacter ... 99 3e-20 UniRef50_C7N574 Competence protein ComEA-like protein with helix... 99 3e-20 UniRef50_A5VJ84 Competence protein ComEA helix-hairpin-helix rep... 99 3e-20 UniRef50_B3WE30 ComE operon protein 1 n=9 Tax=Lactobacillus RepI... 99 4e-20 UniRef50_Q7VNA6 Putative uncharacterized protein n=1 Tax=Haemoph... 99 4e-20 UniRef50_B8GUY5 DNA uptake protein and related DNA-binding prote... 99 4e-20 UniRef50_A4AGG3 Competence protein ComEA helix-hairpin-helix reg... 99 4e-20 UniRef50_Q6M3A1 Secreted DNA uptake protein or related DNA-bindi... 99 4e-20 UniRef50_A3Y3S0 DNA uptake protein n=10 Tax=Vibrionales RepID=A3... 99 4e-20 UniRef50_Q49Y31 Putative DNA uptake protein and related DNA-bind... 99 4e-20 UniRef50_A8RS55 Putative uncharacterized protein n=1 Tax=Clostri... 99 4e-20 UniRef50_B4SN39 Competence protein ComEA helix-hairpin-helix rep... 99 4e-20 UniRef50_C4K4N8 Putative uncharacterized protein n=1 Tax=Candida... 99 4e-20 UniRef50_A6BGR9 Putative uncharacterized protein n=1 Tax=Dorea l... 99 4e-20 UniRef50_C9A015 Late competence protein ComEA n=1 Tax=Enterococc... 99 5e-20 UniRef50_Q042S8 DNA uptake protein related DNA-binding protein n... 99 5e-20 UniRef50_A3CLU6 DNA uptake protein, putative n=38 Tax=Streptococ... 99 5e-20 UniRef50_B8FUQ3 Competence protein ComEA helix-hairpin-helix rep... 99 5e-20 UniRef50_A1S4Z4 DNA uptake protein-related DNA-binding protein n... 99 5e-20 UniRef50_Q4FVH1 Putative competence DNA binding protein ComEA n=... 99 5e-20 UniRef50_D0SCS9 Putative uncharacterized protein n=1 Tax=Acineto... 98 6e-20 UniRef50_C7XTN3 Competence protein n=1 Tax=Lactobacillus coleoho... 98 6e-20 UniRef50_B0NE87 Putative uncharacterized protein n=1 Tax=Clostri... 98 6e-20 UniRef50_A3QFV7 Competence protein ComEA helix-hairpin-helix rep... 98 6e-20 UniRef50_C6IZI4 Competence protein ComEA helix-hairpin-helix rep... 98 6e-20 UniRef50_Q2BK91 Putative uncharacterized protein n=1 Tax=Neptuni... 98 6e-20 UniRef50_C2E267 Competence protein ComEA n=4 Tax=Lactobacillus j... 98 6e-20 UniRef50_C0WQ86 Competence protein ComEA n=3 Tax=Lactobacillus R... 98 6e-20 UniRef50_C5S429 DNA uptake protein n=2 Tax=Actinobacillus minor ... 98 6e-20 UniRef50_Q1J5X8 COME operon protein 1 n=11 Tax=Streptococcus pyo... 98 6e-20 UniRef50_B8KIU0 Competence protein ComEA helix-hairpin-helix rep... 98 7e-20 UniRef50_UPI0001976DE0 hypothetical protein BbifN4_05079 n=1 Tax... 98 7e-20 UniRef50_C1YNH2 DNA uptake protein n=1 Tax=Nocardiopsis dassonvi... 98 7e-20 UniRef50_C2C1Y0 ComEA family DNA-binding competence protein n=1 ... 98 7e-20 UniRef50_D0SS69 ComE1 n=1 Tax=Acinetobacter lwoffii SH145 RepID=... 98 8e-20 UniRef50_Q4JWS7 Putative uncharacterized protein n=2 Tax=Coryneb... 98 9e-20 UniRef50_Q47IV8 Competence protein ComEA helix-hairpin-helix reg... 98 1e-19 UniRef50_C1DBR5 Probable DNA transport competence protein n=1 Ta... 98 1e-19 UniRef50_D1BEI9 DNA uptake protein n=1 Tax=Sanguibacter keddieii... 98 1e-19 UniRef50_Q9RIA7 ComEA protein (Fragment) n=4 Tax=Neisseria RepID... 98 1e-19 UniRef50_B0MCG3 Putative uncharacterized protein n=2 Tax=Clostri... 97 1e-19 UniRef50_B7ASY0 Putative uncharacterized protein n=1 Tax=Bactero... 97 1e-19 UniRef50_C6JE10 DNA uptake protein n=1 Tax=Ruminococcus sp. 5_1_... 97 1e-19 UniRef50_A8VU71 HAD superfamily (Subfamily IIIA) phosphatase, TI... 97 1e-19 UniRef50_C4DRK5 Competence protein ComEA-like protein with helix... 97 1e-19 UniRef50_A8H5Z5 Competence protein ComEA helix-hairpin-helix rep... 97 1e-19 UniRef50_C5CCD9 Competence protein ComEA-like protein with helix... 97 2e-19 UniRef50_A8U897 Competence protein comEA n=1 Tax=Carnobacterium ... 97 2e-19 UniRef50_D0WN87 Competence protein n=1 Tax=Actinomyces sp. oral ... 97 2e-19 UniRef50_D1BMN5 Competence protein ComEA helix-hairpin-helix rep... 97 2e-19 UniRef50_C4LC84 Competence protein ComEA helix-hairpin-helix rep... 97 2e-19 UniRef50_A4XAF1 Competence protein ComEA helix-hairpin-helix rep... 97 2e-19 UniRef50_D0X9N0 Putative uncharacterized protein n=1 Tax=Vibrio ... 97 2e-19 UniRef50_A0Q1S7 Competence protein n=3 Tax=Clostridium RepID=A0Q... 97 2e-19 UniRef50_C2L1I3 Possible helix-hairpin-helix repeat-containing c... 97 2e-19 UniRef50_B7IEN5 Putative uncharacterized protein n=1 Tax=Thermos... 97 2e-19 UniRef50_C4GM10 Putative uncharacterized protein n=2 Tax=Kingell... 97 2e-19 UniRef50_C5RD12 Late competence protein required for DNA binding... 97 2e-19 UniRef50_A0YFD4 Competence protein ComEA helix-hairpin-helix reg... 97 2e-19 UniRef50_Q83MW2 ComE operon protein 1-like protein n=2 Tax=Troph... 96 2e-19 UniRef50_D0IBX9 Putative DNA uptake protein n=1 Tax=Grimontia ho... 96 2e-19 UniRef50_Q3BQY6 ComEA-related DNA uptake protein n=16 Tax=Xantho... 96 2e-19 UniRef50_A9LZV6 DNA transport competence protein n=59 Tax=Proteo... 96 2e-19 UniRef50_C4Z9D4 Unspecific high-affinity DNA-binding protein n=1... 96 3e-19 UniRef50_C0BAZ1 Putative uncharacterized protein n=1 Tax=Coproco... 96 3e-19 UniRef50_Q0A9Z1 Competence protein ComEA helix-hairpin-helix rep... 96 3e-19 UniRef50_C2M102 ComE operon protein 1 n=1 Tax=Staphylococcus hom... 96 3e-19 UniRef50_Q1ZRP0 Putative DNA uptake protein n=5 Tax=Photobacteri... 96 3e-19 UniRef50_C0DYR9 Putative uncharacterized protein n=1 Tax=Eikenel... 96 3e-19 UniRef50_B3PII0 Integral membrane protein n=1 Tax=Cellvibrio jap... 96 3e-19 UniRef50_C6P172 Competence protein ComEA helix-hairpin-helix rep... 96 4e-19 UniRef50_A7GT21 Competence protein ComEA helix-hairpin-helix rep... 96 4e-19 UniRef50_A9WS83 Competence protein n=1 Tax=Renibacterium salmoni... 96 4e-19 UniRef50_C0EWP2 Putative uncharacterized protein n=1 Tax=Eubacte... 96 4e-19 UniRef50_A6LNS9 Competence protein ComEA helix-hairpin-helix rep... 96 4e-19 UniRef50_A3WQC9 DNA uptake protein, DNA-binding n=1 Tax=Idiomari... 96 5e-19 UniRef50_D1AA93 Competence protein ComEA helix-hairpin-helix rep... 95 5e-19 UniRef50_C4L439 Competence protein ComEA helix-hairpin-helix rep... 95 5e-19 UniRef50_C0BTC9 Putative uncharacterized protein n=1 Tax=Bifidob... 95 5e-19 UniRef50_B0ADP5 Putative uncharacterized protein n=1 Tax=Clostri... 95 5e-19 UniRef50_B6GCK7 Putative uncharacterized protein n=2 Tax=Collins... 95 6e-19 UniRef50_Q1QEJ7 Competence protein ComEA helix-hairpin-helix reg... 95 7e-19 UniRef50_C9PNI8 DNA topoisomerase TopA n=1 Tax=Pasteurella dagma... 95 7e-19 UniRef50_A9WII9 Helix-hairpin-helix motif n=2 Tax=Chloroflexus R... 95 7e-19 UniRef50_D2ML54 Competence protein ComEA helix-hairpin-helix rep... 95 7e-19 UniRef50_Q03F17 DNA uptake protein related DNA-binding protein n... 95 7e-19 UniRef50_Q04B44 DNA uptake protein related DNA-binding protein n... 95 7e-19 UniRef50_D2SCU5 Competence protein ComEA helix-hairpin-helix rep... 95 8e-19 UniRef50_A1U508 Competence protein ComEA helix-hairpin-helix rep... 95 8e-19 UniRef50_C8W5N5 Competence protein ComEA helix-hairpin-helix rep... 95 8e-19 UniRef50_A9KHN6 Competence protein ComEA helix-hairpin-helix rep... 95 8e-19 UniRef50_D2BL64 ComE operon protein 1 n=4 Tax=Lactococcus lactis... 95 9e-19 UniRef50_A8ZWL0 Competence protein ComEA helix-hairpin-helix rep... 95 9e-19 UniRef50_C5CHC5 Competence protein ComEA helix-hairpin-helix rep... 95 9e-19 UniRef50_D1Y3C2 ComE operon protein 1 n=1 Tax=Pyramidobacter pis... 95 1e-18 UniRef50_UPI00016942F5 late competence protein (DNA binding and ... 94 1e-18 UniRef50_D1NTU4 Competence protein n=1 Tax=Bifidobacterium galli... 94 1e-18 UniRef50_C2D6C0 Possible competence protein ComEA family protein... 94 1e-18 UniRef50_Q21IS7 Competence protein ComEA helix-hairpin-helix reg... 94 1e-18 Sequences not found previously or not previously below threshold: UniRef50_C4FEZ1 Putative uncharacterized protein n=1 Tax=Bifidob... 103 2e-21 UniRef50_C2BUY4 Possible helix-hairpin-helix DNA-binding motif-c... 102 5e-21 UniRef50_C5C480 Competence protein ComEA helix-hairpin-helix rep... 99 3e-20 UniRef50_D0LC07 Competence protein ComEA helix-hairpin-helix rep... 99 4e-20 UniRef50_A1TBZ2 Competence protein ComEA helix-hairpin-helix rep... 98 7e-20 UniRef50_Q5HNV7 ComE operon protein 1, putative n=6 Tax=Staphylo... 98 1e-19 UniRef50_C7MDA6 Competence protein ComEA-like protein with helix... 97 1e-19 UniRef50_C6LGL8 Competence protein n=1 Tax=Bryantella formatexig... 97 2e-19 UniRef50_Q2JI81 Phospholipase D/competence protein ComEA helix-h... 96 3e-19 UniRef50_B7GQM9 Competence protein ComEA helix-hairpin-helix rep... 96 4e-19 UniRef50_D2RBH1 ComEA protein n=1 Tax=Gardnerella vaginalis 409-... 96 4e-19 UniRef50_B6XTW3 Putative uncharacterized protein n=1 Tax=Bifidob... 96 4e-19 UniRef50_C7MPR3 DNA uptake protein n=1 Tax=Saccharomonospora vir... 96 4e-19 UniRef50_Q47RQ3 Helix-hairpin-helix DNA-binding, class 1 n=1 Tax... 96 5e-19 UniRef50_C4WC99 ComE operon protein 1 n=1 Tax=Staphylococcus war... 94 1e-18 >UniRef50_P0AAR8 Uncharacterized protein ybaV n=69 Tax=Enterobacteriaceae RepID=YBAV_ECOLI Length = 123 Score = 165 bits (419), Expect = 3e-40, Method: Composition-based stats. Identities = 123/123 (100%), Positives = 123/123 (100%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT Sbjct: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV Sbjct: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 Query: 121 LTL 123 LTL Sbjct: 121 LTL 123 >UniRef50_A7ZIK0 Competence protein ComEA n=33 Tax=Enterobacteriaceae RepID=A7ZIK0_ECO24 Length = 123 Score = 165 bits (418), Expect = 4e-40, Method: Composition-based stats. Identities = 122/123 (99%), Positives = 122/123 (99%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 MKHGIKALLITLSLACAGMSHSALAAASVAKPT VETKAEAPAAQSKAAVPAKASDEEGT Sbjct: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTTVETKAEAPAAQSKAAVPAKASDEEGT 60 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV Sbjct: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 Query: 121 LTL 123 LTL Sbjct: 121 LTL 123 >UniRef50_A4W7B3 Competence protein ComEA helix-hairpin-helix repeat protein n=4 Tax=Enterobacteriaceae RepID=A4W7B3_ENT38 Length = 129 Score = 132 bits (332), Expect = 3e-30, Method: Composition-based stats. Identities = 86/129 (66%), Positives = 103/129 (79%), Gaps = 6/129 (4%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA------QSKAAVPAKA 54 MK GIKAL ITL++A AGMS SA+AA VAK A + A++ Q+KA AKA Sbjct: 1 MKRGIKALFITLAIATAGMSFSAMAATPVAKTHATSSAADSATPSASASEQTKAKASAKA 60 Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 +DEEGT+VSIN+ASAE+LA AMNGVGLKKAQAI++YR+EYGPFKT++DLKQVPG+GNSLV Sbjct: 61 TDEEGTQVSINSASAEDLAHAMNGVGLKKAQAIIAYRDEYGPFKTIDDLKQVPGIGNSLV 120 Query: 115 ERNLAVLTL 123 ERNL LTL Sbjct: 121 ERNLTHLTL 129 >UniRef50_C6RS77 Competence protein, ComEA helix-hairpin-helix repeat domain n=2 Tax=Acinetobacter radioresistens RepID=C6RS77_ACIRA Length = 138 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 3/122 (2%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTAVETKAEA---PAAQSKAAVPAKASDEEGTR 61 + LL L LA AG + S K + + S A+ + Sbjct: 17 MLGLLACLWLASAGQVQAQQFDDSYLKWKNQQLDHDRRLLQQTGSMTMSSGPAAQISTEK 76 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 VS+N SA++L + ++GVG KKAQAIV YR + G F ++EDL++V G+G L E+N + L Sbjct: 77 VSLNRGSADQLQQVLSGVGEKKAQAIVEYRNKNGKFNSIEDLQKVKGIGPKLFEKNKSRL 136 Query: 122 TL 123 TL Sbjct: 137 TL 138 >UniRef50_B0K405 Competence protein ComEA helix-hairpin-helix repeat protein n=10 Tax=Thermoanaerobacterales RepID=B0K405_THEPX Length = 201 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 M+ G + ++ ++ A + + L ++A+ E + P +A V + + Sbjct: 80 MEEGER-VIDAINKAGGPLEEADLTNINLAQKVKDEQMIKVPKKGEEAMVSFSDTTAKDK 138 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +++IN A+ EEL + + G+G A+ I+ +RE GPFK +ED+ V +G + E+ Sbjct: 139 KININTATREEL-QTLPGIGPVTAERIIEFRESKGPFKKIEDIVNVSRIGPKMFEQIKDK 197 Query: 121 LTL 123 +T+ Sbjct: 198 ITV 200 >UniRef50_Q65RQ5 ComEA protein n=2 Tax=Pasteurellaceae RepID=Q65RQ5_MANSM Length = 161 Score = 121 bits (303), Expect = 9e-27, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 7/123 (5%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 MK ++ L++ LA + + A A+ P + ET+A K + AK +D G Sbjct: 46 MKLSVRKFLLS-CLAAGSLLSAGTAFAADKVPASAETQAI------KTSETAKPADNIGN 98 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 V+IN A+AEE+ + + G+G KKA+AI+ YRE++G F VE L ++ G+G + +++N Sbjct: 99 TVNINTATAEEIKQTLIGIGAKKAEAIIQYREKHGNFTNVEQLLEIQGIGEATLDKNKDR 158 Query: 121 LTL 123 + L Sbjct: 159 IKL 161 >UniRef50_B5YE67 ComEA protein n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YE67_DICT6 Length = 184 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 7/121 (5%) Query: 8 LLITLSLACAGMSHSALAAASVAK------PTAVETKAEAPAAQSKAAVPAKASDEEGTR 61 ++ ++LA + + L ++A + K + + SK K E+ + Sbjct: 64 VIDAVNLAGGPLPSADLDRINLADFLKDGSKIYIPPKDDNLDSNSKNQNALKDGLEKKGK 123 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN AS EEL ++ G+G AQ I+ YREE G F + EDL V G+G +E+ + Sbjct: 124 VNINTASKEEL-ESLPGIGPTLAQRIIEYREENGVFTSAEDLLNVKGIGEKKLEKIKDQI 182 Query: 122 T 122 T Sbjct: 183 T 183 >UniRef50_B8E2A5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2A5_DICTD Length = 187 Score = 117 bits (294), Expect = 9e-26, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 10/124 (8%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKAS---------DEE 58 ++ ++LA + + L ++A +K P+ + K+ + Sbjct: 64 VIDAINLAGGSLPSADLDKVNLADFLRDGSKIYIPSKLENSENELKSQAILSTRKIDTSK 123 Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 +V+IN AS EEL ++ G+G AQ I+ YREE GPF + EDL V G+G +ER Sbjct: 124 SDKVNINTASKEEL-ESLPGIGPTLAQRIIEYREENGPFGSAEDLLNVKGIGEKKLERIR 182 Query: 119 AVLT 122 +T Sbjct: 183 DQIT 186 >UniRef50_C6CQU2 Competence protein ComEA helix-hairpin-helix repeat protein n=8 Tax=Enterobacteriaceae RepID=C6CQU2_DICZE Length = 130 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 60/132 (45%), Positives = 81/132 (61%), Gaps = 11/132 (8%) Query: 1 MKH-GIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQ--------SKAAVP 51 MK+ GIKAL + ++ G+S A+ + P A + KAA P Sbjct: 1 MKNSGIKALCFIVGMSLTGVSTWLHASPTTPAPDKTSVTAAKSPSSSPSADSKVEKAAKP 60 Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 A+DEE VSIN A+AE+LA +NGVGLKKAQAIVSYRE+ GPF +E L++VPG+G+ Sbjct: 61 LVAADEEE--VSINTATAEQLATVLNGVGLKKAQAIVSYREQNGPFTQIEQLQEVPGIGS 118 Query: 112 SLVERNLAVLTL 123 +L+ERN + L L Sbjct: 119 ALIERNQSRLRL 130 >UniRef50_Q88LW4 ComEA-related protein n=4 Tax=Pseudomonas RepID=Q88LW4_PSEPK Length = 112 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 15/123 (12%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 M++ + + L+ A S SA A+++A P V A+A + Sbjct: 4 MRNNVLSYLLLPLFASLSFSLSAAPASTMAVPEPVPVVAQAQ---------------QAP 48 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 R+ +N A A L + +NG+G KA+AIV+YRE GPF +V++L ++ G+GN+L+ERN Sbjct: 49 RLDLNTADALTLQKELNGIGKAKAEAIVAYREANGPFASVDELLEIKGIGNALLERNRDK 108 Query: 121 LTL 123 + + Sbjct: 109 VMV 111 >UniRef50_Q0AWK6 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWK6_SYNWW Length = 207 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%) Query: 12 LSLACAGMSHSALAAASVAKPTAVETKAEAPAAQ--SKAAVPAKASDEEGTRVSINNASA 69 L M+ + ++ P E AE Q S+ V + AS +V+IN A A Sbjct: 93 ADLRLIDMARPLVDGETIVVPGEGELTAEMAGVQGASQLPVSSPASPVGSGKVNINKAPA 152 Query: 70 EELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 ELA +NG+G +Q IV YRE G F+ +ED+K V G+G E +T+ Sbjct: 153 SELADRLNGIGPALSQRIVDYRESNGAFQKIEDIKNVSGIGEKKFEAIKDHITV 206 >UniRef50_Q6F851 Putative DNA uptake protein and/or related DNA-binding protein n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6F851_ACIAD Length = 128 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 36/93 (38%), Positives = 61/93 (65%), Gaps = 2/93 (2%) Query: 31 KPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSY 90 + A +T+ + A+ + P + S G +V+IN+A+A+EL + ++GVG KKA AIV Y Sbjct: 38 QQKAHDTRLNSSASHHSLSKPTQQSGT-GVKVNINSATAKELQQ-LHGVGEKKALAIVEY 95 Query: 91 REEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 R++YG F +V+DL++V G+G +E+N L + Sbjct: 96 RQQYGKFASVDDLQKVKGIGPKFIEKNRDRLAI 128 >UniRef50_Q3AF21 Competence protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AF21_CARHZ Length = 204 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 3/120 (2%) Query: 6 KALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS--KAAVPAKASDEEGTRVS 63 + +L + ++ + P ET + + K S + +V+ Sbjct: 85 RGMLPLADDSSINLAAKVSDGQKIYIPFKNETTTASASTNKAFGQQNALKGSGGQEAKVN 144 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 IN A+AEEL + GVG A I+ YRE+ GPF T+EDLK+V G+G+ E +T+ Sbjct: 145 INTATAEELDE-LPGVGPATAAKIIEYREQNGPFATIEDLKKVKGIGDKKFETLKDYITV 203 >UniRef50_B0VFU5 Putative ComEA protein-related protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFU5_9BACT Length = 215 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%) Query: 41 APAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTV 100 P++ SK + + V+IN A+ EEL ++G+G KAQAI+ +REE G F+T+ Sbjct: 133 TPSSTSKTKSATISKANNTSPVNINTANLEELC-TLSGIGEVKAQAIIDWREENGSFETI 191 Query: 101 EDLKQVPGMGNSLVERNLAVLTL 123 ED+ +V G+G E+N LT+ Sbjct: 192 EDIMKVKGIGPKTFEKNKDRLTV 214 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 +++ ++ I A+ EEL ++G+G K+A+ I++YRE PF +V + + G+G Sbjct: 56 EDKPLQLDIRIATFEELL-CLSGIGEKRAKDIIAYRETN-PFTSVNQIMNIKGIGAKTYA 113 Query: 116 RNLAVLTL 123 + L L + Sbjct: 114 KILPDLLV 121 >UniRef50_C9RUW2 Competence protein ComEA helix-hairpin-helix repeat protein n=7 Tax=Geobacillus RepID=C9RUW2_GEOSY Length = 207 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 7/119 (5%) Query: 11 TLSLACAGMSHSALAAASVAKPT------AVETKAEAPAAQSKAAVPAKASDEEGTRVSI 64 + LA + ++A V K EA A + +G +V++ Sbjct: 89 VIVLAGGLTDEADETKVNLAAKVRDEMMIYVPAKGEAAPASNAVGKSPSDGARDGPQVAV 148 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N A+ EEL + + G+G KA+AI++YREE+GPF+ VEDL V G+G +E+ L + Sbjct: 149 NMATEEELMQ-LPGIGPAKAKAIIAYREEHGPFQRVEDLLNVTGIGEKTLEKLKPYLLV 206 >UniRef50_C2E8F5 Competence protein ComEA n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E8F5_9LACO Length = 250 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 1/99 (1%) Query: 25 AAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKA 84 + + A + +AQ++ ++ ++++N AS E+L + + G+G KKA Sbjct: 153 SDDKSDQNEANSAAEKISSAQTQTDSTSQGQGGNDGKINLNTASKEQLMQ-LTGIGDKKA 211 Query: 85 QAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 I++YR++ G FKT++DLK V G+G+ E+ + +T+ Sbjct: 212 DEIIAYRQQNGNFKTIDDLKNVSGIGDKTFEKISSQITV 250 >UniRef50_C9CQC8 DNA-binding protein n=3 Tax=Enterococcus casseliflavus RepID=C9CQC8_ENTCA Length = 213 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 66/114 (57%), Gaps = 7/114 (6%) Query: 16 CAGMSHSAL-AAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEG-----TRVSINNASA 69 G++ AL A ++A+ + P + +A AS G T++++N A+A Sbjct: 99 AGGLTEEALETAINLAQVLQDQQMVIVPHKEDQAFTEMNASGVGGSQTAVTQINLNQANA 158 Query: 70 EELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 ++L + + GVG KKA+AI++YREEYG FK ++DLK++ G+G E ++T+ Sbjct: 159 QQL-QELPGVGAKKAEAIIAYREEYGFFKQIDDLKKITGIGEKTFESLKEMITV 211 >UniRef50_Q7N0L8 Similar to unknown protein YbaV of Escherichia coli n=2 Tax=Photorhabdus RepID=Q7N0L8_PHOLL Length = 124 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 53/123 (43%), Positives = 73/123 (59%), Gaps = 4/123 (3%) Query: 2 KHGIKALLIT-LSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD-EEG 59 K GI ++L+ L AC G A+AA V A + ++ K A EE Sbjct: 3 KSGILSVLLAGLLYACGG--QFAIAAEQVKDKVAKAASTTSHSSPEKQLQQQDALKVEEK 60 Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 +V+IN ASAEELARA+NG+G+KKAQ IV YRE++G F VE L++V G+G +ERN + Sbjct: 61 GKVNINTASAEELARALNGIGVKKAQGIVEYREKHGAFTAVEQLQEVQGIGPVFIERNRS 120 Query: 120 VLT 122 L+ Sbjct: 121 KLS 123 >UniRef50_A3N254 DNA uptake protein n=5 Tax=Pasteurellaceae RepID=A3N254_ACTP2 Length = 114 Score = 111 bits (278), Expect = 6e-24, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 16 CAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARA 75 + L+A S+AKP P Q A ++ +V+IN A A E+ Sbjct: 8 SISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTA--DKQNQVNINTADAAEIKSK 65 Query: 76 MNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + G+G KKAQAIV YR + G F T+E L +V G+G + +E+N +TL Sbjct: 66 LVGIGEKKAQAIVDYRTKNGAFITIEQLTEVSGIGKATLEKNRERITL 113 >UniRef50_B7GKB3 Late competence protein ComEA (DNA binding and uptake) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GKB3_ANOFW Length = 198 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKA-SDEEGTRVSINNASA 69 + LA + ++A E P V + + +++IN A+ Sbjct: 85 VIQLAGGLTDEADETKVNLAMKVHDEMVIYVPKKGEDIIVETTSQTGSSSGKININTATI 144 Query: 70 EELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 E+L + + G+G KA AI++YREE+GPF+ VEDL V G+G+ +E+ + + Sbjct: 145 EQL-QTLQGIGPVKAAAIIAYREEHGPFQKVEDLLNVSGIGSKSLEKIKEQIVV 197 >UniRef50_C0VPS9 DNA uptake protein n=2 Tax=Acinetobacter RepID=C0VPS9_9GAMM Length = 141 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 14/129 (10%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEA-------------PAAQSKAAVPAKA 54 LLI L L ++ S + + K + P Q + + Sbjct: 14 LLIILWLGVIPQLNAKQFDQSYIQWKTQQQKHDQQLARQDDQYYLSRPTQQQNVKPVSSS 73 Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 + G ++S+N A+ ++L ++++GVG KKAQAI+ YR+++G FK +++L V G+G L+ Sbjct: 74 VNISGDKISLNQANLQQL-QSLSGVGEKKAQAIIEYRQKHGAFKALDELMNVKGIGPKLL 132 Query: 115 ERNLAVLTL 123 E+N + L L Sbjct: 133 EKNRSRLIL 141 >UniRef50_A0KYK0 Competence protein ComEA helix-hairpin-helix repeat protein n=4 Tax=Shewanella RepID=A0KYK0_SHESA Length = 121 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 4/121 (3%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRV 62 H + A++ ++ +C + A+AA + V +A+A KA AK + + +V Sbjct: 5 HRLPAMVSAIAFSCL-FALPAMAADPAKDVSKV--QAQAQTEVKKATTDAKQAMPDSAQV 61 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +IN AS+E+L + + G+G KAQAI+ YR + G FK +++L V G+G L+E+N ++ Sbjct: 62 NINTASSEQL-QLLKGIGAAKAQAIIDYRTQNGKFKAIDELANVSGIGAKLIEQNRHMIK 120 Query: 123 L 123 L Sbjct: 121 L 121 >UniRef50_C0GEP7 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEP7_9FIRM Length = 192 Score = 111 bits (277), Expect = 9e-24, Method: Composition-based stats. Identities = 43/110 (39%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 15 ACAGMSHSALA-AASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELA 73 A G+ A A ++A+P + P A+ E +V+IN A+A EL Sbjct: 85 AAGGVLPDGDAHALNLAEPLYDGRRINVPFAED--VETPTGGVAESGKVNINTATAAEL- 141 Query: 74 RAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ G+G KA AI SYREE GPF++VEDL QV G+G VE +TL Sbjct: 142 EALPGIGPAKAAAISSYREENGPFRSVEDLVQVSGIGVKTVESLKEHITL 191 >UniRef50_B7H014 ComE1 n=11 Tax=Acinetobacter RepID=B7H014_ACIB3 Length = 136 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 17/138 (12%) Query: 1 MKHGIKAL---LITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKAS-- 55 M++ I+ L + C G+ ++ A S + E KA+ K + + Sbjct: 1 MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQ-EWKAKQQMYDQKLNITKSSHSN 59 Query: 56 ----------DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQ 105 ++ ++ +N A+ E + + G+G KKAQAIV YR++ G FK ++++K Sbjct: 60 GSKISQTKNFNDSTGQIHLNQANVNEFQQ-LKGIGEKKAQAIVEYRQKNGSFKNIDEIKN 118 Query: 106 VPGMGNSLVERNLAVLTL 123 V G+G ++ E+N + L L Sbjct: 119 VKGIGPAIFEKNKSRLAL 136 >UniRef50_A8GAR4 Competence protein ComEA helix-hairpin-helix repeat protein n=4 Tax=Enterobacteriaceae RepID=A8GAR4_SERP5 Length = 129 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 50/121 (41%), Positives = 66/121 (54%), Gaps = 5/121 (4%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRV 62 KALL L G S +A A +P AA + A A+ + V Sbjct: 14 FNFKALLTVALLCLTGPSLAAEEKALTGQPV-----LSVTAANAGQGAEAVAAANDEASV 68 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 SIN A AE+LA + GVGLKKA++IV YRE+ GPF +E L++VPG+G +L ERN A L Sbjct: 69 SINQADAEQLASILKGVGLKKAESIVRYREQNGPFTQIEQLQEVPGIGPALFERNRARLK 128 Query: 123 L 123 + Sbjct: 129 M 129 >UniRef50_A5N6K8 Predicted DNA-binding competence protein n=14 Tax=Clostridium RepID=A5N6K8_CLOK5 Length = 200 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 11 TLSLACAGMSHSALAAA-SVAKPTAVETKAEAPAAQS----KAAVPAKASDEEGTRVSIN 65 L AC G ++ A + ++AK E + + E +++IN Sbjct: 83 DLVKACGGFTNEANSYKLNLAKKLKDEDYIYVDKKSDNENLQLQNGLQGETSENAKININ 142 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ EEL + + G+G AQ I+ YRE+ G F ++EDLK V +G+ +E+ + + Sbjct: 143 TATKEEL-KTIPGIGDVTAQKIMDYREQNGGFSSIEDLKNVDRIGDKTLEKIKDKVDI 199 >UniRef50_B9CKK4 Competence protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CKK4_9ACTN Length = 241 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 8/116 (6%) Query: 15 ACAGMSHSA-LAAASVAKPTA------VETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 A G S +A ++ ++AKP V + E S+ +V + + E + V+IN A Sbjct: 126 AAGGPSDTADISELNLAKPIKDGDKIHVPQEGEKQVPSSENSVEPSSKNSEQSLVNINVA 185 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + EEL + + GVG AQAIV R++ GPF EDL +V G+G ER + + Sbjct: 186 TEEELTK-LPGVGKSMAQAIVKDRDKNGPFIKAEDLMRVSGIGEKKFERMKDYVCV 240 >UniRef50_Q4L6U1 Similar to late competence operon protein required for DNA binding and uptake ComEA n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4L6U1_STAHJ Length = 234 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPA--AQSKAAVPAKASDEEGTRVSIN 65 LL L+ +S + P A E K A +K+ + +V+IN Sbjct: 118 LLTDADLSQVNLSEKLTDQKLIYIPFANENKNPITQNDANNKSGHSKSLNSSSTNKVNIN 177 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 AS EL + + GVG K + I+ YR++ F ++EDLK + G+G+ ER +T Sbjct: 178 TASEAELLK-IPGVGPAKVREIIDYRQKNNTFHSIEDLKNIKGIGDKTFERIKEYIT 233 >UniRef50_D2NT61 DNA uptake protein n=2 Tax=Rothia mucilaginosa RepID=D2NT61_9MICC Length = 391 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 60/107 (56%), Gaps = 1/107 (0%) Query: 17 AGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAM 76 G +++ A+ ++ ++ PA ++ + T V+IN A+AEEL + + Sbjct: 286 GGTANAGQGNAANGAAQNGASQGGTQPQPARTLTPAGSAQKGSTPVNINTATAEEL-QTL 344 Query: 77 NGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +G AQ I+++RE +G F++V++L VPG+G S++E ++T+ Sbjct: 345 PRIGPAMAQRIIAWREAHGGFRSVDELDAVPGIGPSMLENLRPLVTV 391 >UniRef50_C4FWP5 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWP5_9FIRM Length = 222 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 5/110 (4%) Query: 16 CAGMSHSALAAASVAKPTAVETKAEAPAAQSK----AAVPAKASDEEGTRVSINNASAEE 71 + + S+ PT E +AE+ Q+ A + +V+IN A + Sbjct: 111 ALNQAQLLVDQQSLYVPTIEEWQAESQGPQANGTGSQAAIVSSPSASSGKVNINQADLSQ 170 Query: 72 LARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 L + G+G KKAQAI+ YR G F ++EDL +V G+G L+++ ++ Sbjct: 171 L-ETLPGIGAKKAQAIIDYRTANGSFHSLEDLGKVKGIGPKLLDKLRDLV 219 >UniRef50_B9MRQ3 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MRQ3_ANATD Length = 219 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 11/123 (8%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR--------- 61 L LA + S L + ++A+ + K P + + +S GT+ Sbjct: 97 ALVLAGGALPGSDLNSINLAEKISDGQKIYIPKIGEVQSQSSLSSSTGGTKQETISEDER 156 Query: 62 -VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 ++IN A+ EEL + +N +G K A+ I+ YR+++GPFK++E++K V G+G + E Sbjct: 157 KININTATKEEL-KTLNRIGDKLAERIIEYRQKHGPFKSIEEIKNVNGIGEKIFESIKDS 215 Query: 121 LTL 123 +T+ Sbjct: 216 ITV 218 >UniRef50_B1I6D0 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Peptococcaceae RepID=B1I6D0_DESAP Length = 190 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 15 ACAGMSHSALAAASVAKPTAVETKA-----EAPAAQSKAAVPAKASDEEGTRVSINNASA 69 + + L A ++A P K P + + +R++IN A Sbjct: 77 MARPLPSADLQALNLAAPLQDGQKVLVPRVRPPDPEGVGPGSNAPAAPVDSRININTADR 136 Query: 70 EELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 EL R + G+G A+ I+ YRE+ GPF +V+DLK V G+G +E + T Sbjct: 137 AELER-LPGIGPSLAERIIRYREQNGPFSSVDDLKNVSGIGEKRLEGLRDMAT 188 >UniRef50_A4XKH1 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XKH1_CALS8 Length = 214 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 64/118 (54%), Gaps = 10/118 (8%) Query: 15 ACAGMSHSALAAASVAKPTAVETKAEAPAA---------QSKAAVPAKASDEEGTRVSIN 65 A + +S + + ++A+ K P S+ A + +S + +++IN Sbjct: 97 AGGVLPNSDMNSLNLAEKIQDGQKIYVPKIGEMQTQSNLSSEVAQNSTSSSGQSGKININ 156 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 AS EEL + ++ +G K A+ I+ YR+E+GPFK++E++K V G+G+ + E +T+ Sbjct: 157 TASKEEL-KTLDRIGDKLAERIIEYRQEHGPFKSIEEIKNVNGIGDKIFEAIKDSITV 213 >UniRef50_A7VCH8 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VCH8_9CLOT Length = 231 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 2/110 (1%) Query: 15 ACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD-EEGTRVSINNASAEELA 73 ++ S + PT E + + +A++ E+ ++ IN A E+L Sbjct: 122 GVLNLAESVQDGQKLYFPTKDEMENQQGVPVDGTYTDGQANNSEQSQKIDINTADKEQLM 181 Query: 74 RAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 ++G+G KA++I+ YR E+G F +ED+ V G+G SL ++ + + Sbjct: 182 -TLSGIGEAKAESIIRYRAEHGNFAQIEDITNVDGIGESLFQKIKEYIYV 230 >UniRef50_A7NJW3 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Roseiflexus RepID=A7NJW3_ROSCS Length = 222 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 8/120 (6%) Query: 11 TLSLACAGMSHSA-LAAASVAKPTAVETKAEAPAAQSKAA------VPAKASDEEGTRVS 63 L LA G+S A + ++A P A P A + AS E + Sbjct: 102 DLVLAAGGLSDDADIERINLAAPIADGQHVRVPWIGDGATMAATAPTESPASGESSGLID 161 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +N A+A EL A+ G+G A IV +RE GPF++V+DL +V G+G +L+ + ++T+ Sbjct: 162 LNRATAAEL-DALPGIGNVLANRIVEWREREGPFQSVDDLGKVEGIGPALLAKLKPLVTV 220 >UniRef50_C0X8I1 Competence protein comEA n=22 Tax=Enterococcus faecalis RepID=C0X8I1_ENTFA Length = 225 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 9/130 (6%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVP-------AK 53 +K+ + L+LA + A + A+ + P A A Sbjct: 96 LKNQQRIW-DALALAGGVSEEADTAQVNYAQKVKDQMIIYVPKKGESVAQSLETLQESAP 154 Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 A + ++++N A+ EL + ++G+G KKAQ I+ +R+E GPFKTVE+LK VPG+G Sbjct: 155 AQQNQEEKINVNTATEAEL-QTISGIGAKKAQEIIRFRDEQGPFKTVEELKNVPGIGEKT 213 Query: 114 VERNLAVLTL 123 VER +LT+ Sbjct: 214 VERLKDMLTV 223 >UniRef50_Q70T35 ComEA protein n=2 Tax=Bacillus RepID=Q70T35_BACME Length = 214 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 8/120 (6%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKAS-------DEEGTRVS 63 L+ A + L ++A E PAA + + S + V+ Sbjct: 95 ALAQAGGATKEADLRQLNLASKLQDEMAVYIPAAGEEIPPSSPVSLISSLGTSNDQPLVN 154 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 IN A+ +EL + +NG+G KA AIVSYREE G F+TVEDL QV G+G +E+ A +T+ Sbjct: 155 INTANTDEL-QTLNGIGPSKASAIVSYREENGLFQTVEDLGQVSGIGEKSLEKIKAQITV 213 >UniRef50_A7HNQ6 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HNQ6_FERNB Length = 227 Score = 108 bits (269), Expect = 7e-23, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 47 KAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQV 106 + +++IN A+ EEL + + G+G KAQAI+ YRE+ G FK++E++K V Sbjct: 151 NNQSQNGNKNISPEKININTANLEEL-QKLPGIGPSKAQAIIDYREKVGKFKSIEEIKNV 209 Query: 107 PGMGNSLVERNLAVLTL 123 G+G E+ ++T+ Sbjct: 210 KGIGEKTYEKLKELITI 226 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 4/114 (3%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASA 69 + A + S + V + E S + + + +N AS Sbjct: 20 FFILFALLIVILSIFYRPFYY--SKVLAQKEQQVNTSVKEANFQKREYASPIIDLNTASV 77 Query: 70 EELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 E+L + + G+G KA+AIV YRE+ PF EDL V G+G E+ +T+ Sbjct: 78 EQL-QTLPGIGPSKARAIVEYREKQ-PFSKPEDLMNVSGIGPKTFEKIKDRITV 129 >UniRef50_C9R8F1 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R8F1_AMMDK Length = 194 Score = 108 bits (269), Expect = 7e-23, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINN 66 LL T ++ + + P AE + + S G ++++N Sbjct: 81 GLLPTADPHALNLAQVLVDGQKIVVP---PKLAEGKEGEVNNPFATRVSASSGGKINLNT 137 Query: 67 ASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 A L + + G+G A+ IV YR + GPF +VEDL +VPG+G +E+ + Sbjct: 138 ADEAAL-QTLPGIGPTLARRIVEYRAKNGPFTSVEDLAKVPGIGPRRLEQLREYV 191 >UniRef50_A5IND1 Competence protein ComEA helix-hairpin-helix repeat protein n=7 Tax=Thermotogaceae RepID=A5IND1_THEP1 Length = 181 Score = 108 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 9/88 (10%) Query: 36 ETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYG 95 ETK E S+ V V +N AS E+L ++ G+G KAQ I+ YRE +G Sbjct: 29 ETKTEEDTTPSQKVVAFP--------VDLNTASLEDLM-SIPGIGPVKAQRIIDYRESHG 79 Query: 96 PFKTVEDLKQVPGMGNSLVERNLAVLTL 123 F +VE+LK V G+G +E+ +T+ Sbjct: 80 GFSSVEELKNVSGIGEKTLEKISGYVTV 107 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 E T++++N AS EEL + +G KA+AIV YRE+ GPF + EDL VPG+G +E+ Sbjct: 117 EVTKLNVNTASVEEL-ETLPYIGEMKAKAIVEYREKNGPFCSPEDLLNVPGIGEKTLEKI 175 Query: 118 LAVLTL 123 +T Sbjct: 176 RGKITF 181 >UniRef50_B7VAN0 Putative competence protein n=6 Tax=Pseudomonas aeruginosa RepID=B7VAN0_PSEA8 Length = 109 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 14/121 (11%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRV 62 H IK+ L+ + AC S SA A P A T A + G +V Sbjct: 2 HLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPA--------------TTVSPGEQV 47 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +IN L R +NGVG KA+AI+ YR +GPF +V+ L +V G+G +L+E+N A + Sbjct: 48 NINTVDEAALIRGLNGVGEAKARAILEYRAAHGPFVSVDQLLEVKGVGPALLEKNRARIV 107 Query: 123 L 123 + Sbjct: 108 I 108 >UniRef50_C1TL78 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL78_9BACT Length = 229 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 1/98 (1%) Query: 26 AASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQ 85 AA + T + + A S A ++ E V++N+AS+EEL + G+G K A Sbjct: 132 AARASVDTGRPGSSSSVTALSYAGTSTGSASERSGAVNLNSASSEEL-ETLPGIGPKTAA 190 Query: 86 AIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 AI+SYRE+ GPF++V++L +V G+G +E ++T+ Sbjct: 191 AILSYREKIGPFRSVDELTKVKGIGPKKLETVRTLVTV 228 >UniRef50_C0CK25 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CK25_9FIRM Length = 242 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 12 LSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEE 71 +L + + T E +++ + ++ E +V+IN A A+ Sbjct: 131 AALGVLNQAQVLTDGQQIRVLTQEELQSQPELVGQTESAGSEQPGESDGKVNINTADAQT 190 Query: 72 LARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 L +NG+G +AQAI++YREE G F++VE +K+V G+G+ + R + + Sbjct: 191 LM-TLNGIGESRAQAILTYREENGLFQSVEQIKEVSGIGDGIFSRIKDEIVI 241 >UniRef50_C6A7M7 Putative DNA-binding protein n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=C6A7M7_BIFLB Length = 258 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 1/109 (0%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAE 70 ++ + A++ + + P+ + P+ + +++ T V+IN A Sbjct: 146 AANMGALDTQATTNASSHTTATASPSDRDSTPSTAAPEPSPSASDNKQDTLVNINTADEA 205 Query: 71 ELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 +L + + G+G A I+ YR ++G F +++DL VPG+G VE+ Sbjct: 206 QL-QEIKGIGPVTAARIIEYRTQHGAFASLDDLVNVPGIGMKTVEKLRP 253 >UniRef50_A6CQY2 Late competence protein (DNA binding and uptake) n=1 Tax=Bacillus sp. SG-1 RepID=A6CQY2_9BACI Length = 202 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 5/119 (4%) Query: 9 LITLSLACAGMSHSALAAA-SVAKPTAVETKAEAPAAQSKAAVPAK---ASDEEGTRVSI 64 + L + G + A + ++A+ E P VP+ ++I Sbjct: 84 VNDLIIRAGGFTEEAHEESVNLAQKVLDEMVIYVPTEDEGGEVPSTEFLTGQGHSELLNI 143 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N AS ++ + G+G KA+AI+ YR+E GPFK VE+LK V G+G + ER +T+ Sbjct: 144 NQASEQDF-DGLPGIGPAKAKAIIEYRKENGPFKAVEELKDVTGIGEATFERLKENITV 201 >UniRef50_A6NW57 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW57_9BACE Length = 147 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 1/102 (0%) Query: 22 SALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGL 81 S +A+ V++ A A +++ ++IN A +E L + + +G Sbjct: 46 SVMASLPVSQTPEPSETGPVETETQTPAPSPSAPEQQSGLININTADSETL-QTLPSIGE 104 Query: 82 KKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 K+A AI++YREE+GPF+ VED+ V G+G ++ + + +T+ Sbjct: 105 KRAAAIIAYREEHGPFRIVEDITNVSGIGEGILSQIIDYITV 146 >UniRef50_C0ZB15 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB15_BREBN Length = 234 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 11/124 (8%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAK----------ASDEEG 59 + A + + L ++A P A PA + A V + ++ Sbjct: 111 TAIEKAGGALPDADLVQINLAAPLADGAALVIPAKGATAPVSSSIGLVQSAASVSTTGAS 170 Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 + +++N A+A+EL ++ G+G +A+AIV YR + GPF++ +DLKQ+ G+G + R Sbjct: 171 SVINLNTATADELM-SLPGIGEARAKAIVDYRSKQGPFRSADDLKQIEGIGEKMFARIKD 229 Query: 120 VLTL 123 L + Sbjct: 230 RLMV 233 >UniRef50_A8Z4C9 Possible competence protein comEA n=52 Tax=Staphylococcus aureus RepID=A8Z4C9_STAAT Length = 228 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 3/115 (2%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 LL ++ +S + P + E +V K + T+V++N A Sbjct: 116 LLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQI--EVNSVHEKNGNTNNTKVNLNTA 173 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 S EL ++ GVG KA AIV YR + G F+ ++DLK+V G G+ ++ + T Sbjct: 174 SVSELM-SVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFT 227 >UniRef50_D2TWD1 Competence protein n=1 Tax=Arsenophonus nasoniae RepID=D2TWD1_9ENTR Length = 122 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 7/123 (5%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE-EG 59 +K IK L A G H+ALA + ++ + P +K + + + Sbjct: 5 IKKKIKFTTRILIFA-IGFCHTALAQSD-----QLKVANDQPQTTTKLVINKMDNRQLMD 58 Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 +V+IN AS EELA +NGVGLKKAQ IV +R+++G FK++E L+ VPG+G +E+N Sbjct: 59 DKVNINTASEEELAEKLNGVGLKKAQLIVLHRKKFGGFKSIEHLQDVPGIGLGFIEKNRE 118 Query: 120 VLT 122 LT Sbjct: 119 KLT 121 >UniRef50_B2GBB2 Competence protein n=4 Tax=Lactobacillus RepID=B2GBB2_LACF3 Length = 224 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 15/135 (11%) Query: 3 HGIKALLITLSLACAGM--SHSALAAASVAKPTAVETKAEAPAAQSK------------A 48 H K + ++A AG S + L ++AK + PA K Sbjct: 91 HLKKGARVQEAIAAAGSQTSLADLNQVNLAKELQDQQVVYVPAQGEKVADATTATTGTTD 150 Query: 49 AVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 A A + +G V++N A+ E+L + ++G+G KKA I++YR+E+G FKTVEDLK V G Sbjct: 151 ATSATSQSGQGDSVNLNTATKEQL-QTIDGIGDKKADKIIAYRQEHGGFKTVEDLKNVDG 209 Query: 109 MGNSLVERNLAVLTL 123 G+ V + L + Sbjct: 210 FGDKTVAKIKDRLAV 224 >UniRef50_C5EH62 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EH62_9FIRM Length = 245 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 17 AGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR---VSINNASAEELA 73 G + A ++ +E +E+ + +A A+D E V++N A+ EEL Sbjct: 137 GGAADYLNLAETLRDGMKLEVPSESQVKEWEAQGIKPAADPEAKTRSMVNLNTATREELM 196 Query: 74 RAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 ++ G+G +A+ I+ YRE YG F+++ED+ V G+ ++ E+ +T+ Sbjct: 197 -SLRGIGESRAEDIIRYRETYGGFQSIEDIMNVSGIKDAAFEKIKDSITV 245 >UniRef50_B6FJL2 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJL2_9CLOT Length = 191 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAV--PAKASDEEGTRVSIN 65 + + A ++ ++ + A E + PAA + + G +V++N Sbjct: 75 VYEAIQKAGGFAENADISEINQAALLQDEEQIYVPAAGEVDHSLKEEGEAGDAGGKVNLN 134 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ EEL + G+G KA +I+ YREE+G F+++ED+KQ+ G+ + + ++ ++T+ Sbjct: 135 TATKEELM-TLAGIGESKADSIIKYREEHGKFQSIEDIKQIEGIKDGVFQKIKDLITV 191 >UniRef50_Q38WQ9 Putative bacterial type II secretion/competence system, protein ComEA-like n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38WQ9_LACSS Length = 234 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 2/102 (1%) Query: 23 ALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT-RVSINNASAEELARAMNGVGL 81 + P + T +E Q+ A AS T ++ +N A + +L + +NG+G Sbjct: 133 VTDQELIQAPQQIATTSERTQEQASTGTSANASSTSDTAKIDLNQADSTQL-QTLNGIGP 191 Query: 82 KKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 KKA+ I++YR+E G FK +EDL++V G+G E+ + + + Sbjct: 192 KKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQICV 233 >UniRef50_B0G876 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0G876_9FIRM Length = 287 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 2/102 (1%) Query: 22 SALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGL 81 + K T+ +E+ S AV S ++ +V++N AS EEL +NG+G Sbjct: 188 PSQEEVDSGKVTSTRNASESDETFSVQAVE-NVSGQDDGKVNLNTASKEELL-TLNGIGD 245 Query: 82 KKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +AQAI+ YREE+G F+++E+L +V G+ ++ + + Sbjct: 246 VRAQAILKYREEHGEFRSIEELMEVEGIKKGTFQKLKDQIKI 287 >UniRef50_P39694 ComE operon protein 1 n=3 Tax=Bacillus RepID=COMEA_BACSU Length = 205 Score = 105 bits (263), Expect = 3e-22, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 33 TAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYRE 92 + K E A Q ++ +G V+IN A+ EEL + ++GVG KA+AI++YRE Sbjct: 115 VYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEEL-QGISGVGPSKAEAIIAYRE 173 Query: 93 EYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 E G F+T+ED+ +V G+G E+ + +T+ Sbjct: 174 ENGRFQTIEDITKVSGIGEKSFEKIKSSITV 204 >UniRef50_Q9CKF6 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CKF6_PASMU Length = 115 Score = 105 bits (263), Expect = 3e-22, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 6/119 (5%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSI 64 +K+LL ++ +S+S+ A A T +T+ + +K D +V+I Sbjct: 3 LKSLLFSV-FVFVSLSNSSNVCAESANMTKAKTEHAV-----VQNIQSKPQDTLNEKVNI 56 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N ASA +L + + G+G KKA+AI+ +RE++GPF +E L+ + G+G +++E+N L L Sbjct: 57 NTASATDLQQKLLGIGAKKAEAIIQHREKHGPFTDIEQLRDIQGIGQAILEKNKTRLQL 115 >UniRef50_Q65H41 ComEA n=6 Tax=Bacillus RepID=Q65H41_BACLD Length = 209 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 7/128 (5%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 MK G + + L A + ++A P +AA + Sbjct: 83 MKEGDR-VHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRAD 141 Query: 61 R-----VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 V+IN AS+EEL +A+ G+G KA+A++ YREE GPF TVED+ V G+G E Sbjct: 142 GASVDIVNINTASSEEL-QAIPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFE 200 Query: 116 RNLAVLTL 123 R + +T+ Sbjct: 201 RIKSAITV 208 >UniRef50_A8FTJ9 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Shewanella sediminis HAW-EB3 RepID=A8FTJ9_SHESH Length = 105 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 2/106 (1%) Query: 19 MSHSALAAASVAKPTAVETK-AEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMN 77 M H+ + A A ++ AEA + V S + ++IN AS +EL +N Sbjct: 1 MKHTVITALFTAALLSLNINIAEAKTKSPEVDVVQPQSQHQSINININTASVQELV-LLN 59 Query: 78 GVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G+G KAQAI+ YR +G F ++ DL +V G+G LVE+N V+TL Sbjct: 60 GIGESKAQAIIDYRTSHGQFDSINDLVKVKGIGTKLVEKNKGVITL 105 >UniRef50_Q67SA3 Putative DNA-binding protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67SA3_SYMTH Length = 230 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 39 AEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFK 98 P + A A T V+IN A EL + G+G A+AI++YR E+GPF+ Sbjct: 147 TYQPVTSTLGGSGAAAGSGGTTLVNINTAGQAEL-ETVPGIGPALARAIITYRTEHGPFQ 205 Query: 99 TVEDLKQVPGMGNSLVERNLAVLT 122 +V+DL V G+G+ +E+ +T Sbjct: 206 SVDDLINVSGIGSKTLEKIRPYVT 229 >UniRef50_D1VU74 Late competence protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VU74_9FIRM Length = 204 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 9/129 (6%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAK------A 54 +K+G + L+ +SLA + L + ++AK + E K A Sbjct: 78 LKNGDR-LVDAISLAGGARDDADLDSCNLAKKLSDEDKIYIKTFDESADNNFNIDSSTAK 136 Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 + +++N+AS +EL + + GVG K A I+ YRE++ FK+VEDLK V G+G+ Sbjct: 137 AISSNILINLNSASKDELMK-IPGVGPKTADKIIDYREKF-QFKSVEDLKNVDGIGDKKF 194 Query: 115 ERNLAVLTL 123 E+ L + Sbjct: 195 EKLKDYLCV 203 >UniRef50_B1HUH7 ComE operon protein 1 n=2 Tax=Bacillaceae RepID=B1HUH7_LYSSC Length = 211 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAK-------ASDE 57 K + + LA + ++ + A+ E P + + S Sbjct: 86 DKRIFDAIQLAGGYIENADTQLVNHAQKVQDEMVIYIPIKGEQLEDISSNLLMLPLESQN 145 Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 + ++++N A AE LA + G+G KA +I+SYREE G F+T++D++ + G+G+ E+ Sbjct: 146 KSQKINVNTADAETLA-TLPGIGPSKAHSILSYREEKGRFQTIDDVRNINGIGDKTFEKI 204 Query: 118 LAVLTL 123 +T+ Sbjct: 205 KDSITV 210 >UniRef50_A8FFE5 Competence protein EA n=2 Tax=Bacillus pumilus RepID=A8FFE5_BACP2 Length = 209 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 1/99 (1%) Query: 25 AAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKA 84 A + V + EA A A + +E+ V++N A A EL + +NG+G KA Sbjct: 111 AKLEDSMMIYVRKQGEAERQTQTAGADAPSGNEKSQSVNVNQADAAEL-QTINGIGPAKA 169 Query: 85 QAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +AI++YREE+G F+ +EDL+ + G G +ER LT+ Sbjct: 170 EAIITYREEHGEFQQIEDLRNISGFGEKTIERLKNELTV 208 >UniRef50_C5VAZ4 Competence protein, ComEA helix-hairpin-helix repeat domain n=2 Tax=Corynebacterium matruchotii RepID=C5VAZ4_9CORY Length = 244 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%) Query: 16 CAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARA 75 ++ + P P + VP++ + ++S+N A+ +EL Sbjct: 138 GLNLAQKLADGQQIVVPNIDAGPVPPPPSGISGGVPSQGGTQVTGKISLNTATVQELT-T 196 Query: 76 MNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + GVG K AQAI++YR+ +G F ++++L+QV G+G + +TL Sbjct: 197 LTGVGEKTAQAIIAYRDAHGGFTSIDELQQVKGIGPAKFATISPEVTL 244 >UniRef50_D1BUZ0 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUZ0_XYLCX Length = 320 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 7/106 (6%) Query: 24 LAAASVAKPTAVETKAEAPAAQSKAAVP------AKASDEEGTRVSINNASAEELARAMN 77 L+A ++A+P + PA A P + RV++N A L + Sbjct: 216 LSAINLARPVVDGEQLRVPAPGEVVAAPVAPDGVPATGRSDDGRVNLNTADEATL-ETLP 274 Query: 78 GVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G+G A IV++R + GPF +V++L +V G+G +++ + ++T+ Sbjct: 275 GIGPALAARIVAWRTDNGPFASVDELDEVSGIGPAMLAKVRDLVTV 320 >UniRef50_C5QSY0 Competence protein comEA n=1 Tax=Staphylococcus epidermidis M23864:W1 RepID=C5QSY0_STAEP Length = 228 Score = 104 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Query: 29 VAKPTAVETKAEAPAAQSKAAVPAKAS-DEEGTRVSINNASAEELARAMNGVGLKKAQAI 87 K V TK E P P ++ + E +V++NNA+ EL + + G+G KA+ I Sbjct: 134 DQKLIYVPTKGEPPHTIRNNNSPITSNQNSENKQVNLNNATESEL-KGVPGIGPTKAKEI 192 Query: 88 VSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 ++YRE+ G F ++DLK++ G G E+ T+ Sbjct: 193 INYREQNGRFDKIDDLKKIKGFGEKTFEKLKEYFTI 228 >UniRef50_C8PAT3 Competence protein CelA n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PAT3_9LACO Length = 213 Score = 104 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 9/129 (6%) Query: 1 MKHGIKALLITLSLACAGM-SHSALAAASVAKPTAVETKAEAP-----AAQSKAAVPAKA 54 +K G + L L G+ S + L A + A+ + + P A + A Sbjct: 88 LKSGSR--LNDLIKKAGGLRSDAQLRAINRARILKDQDQIYIPDKTEKVADTAAEANNVN 145 Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 SD++ +++IN A+A+EL + ++G+G K+A+ I+ RE G FK+++DLKQV G+G + Sbjct: 146 SDDKQDKININTATAQEL-QKLSGIGQKRAEQIIECRERIGGFKSIDDLKQVSGIGVKTI 204 Query: 115 ERNLAVLTL 123 E+ L L Sbjct: 205 EKLKPHLVL 213 >UniRef50_D1CCQ9 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCQ9_THET1 Length = 206 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 64/134 (47%), Gaps = 17/134 (12%) Query: 6 KALLITLSLACAGMSHSA-LAAASVAKPTAVETKAEAP---------------AAQSKAA 49 ++ ++ + G + A + ++A+ E + P A + Sbjct: 73 RSRVVDVVKMAGGFTTRADTMSVNLAQILRDEMQVIVPFKAPGSKLGSNNGQSALNPTHS 132 Query: 50 VPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 + A + + ++IN A+ E+L + G+G KA AI+ +R+++GPF ++EDL VPG+ Sbjct: 133 SGSAAQEPQVAPININTATKEQLEE-LPGIGPSKAAAIIEFRQKHGPFNSLEDLLDVPGI 191 Query: 110 GNSLVERNLAVLTL 123 G S +E +++ Sbjct: 192 GPSTLENIKSMVVF 205 >UniRef50_Q9KD84 Late competence operon required for DNA binding and uptake n=1 Tax=Bacillus halodurans RepID=Q9KD84_BACHD Length = 210 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 66/118 (55%), Gaps = 4/118 (3%) Query: 9 LITLSLACAGMSH-SALAAASVAKPTAVETKAEAP-AAQSKAAVPAKASDEEGTR-VSIN 65 +I + GM+ +A+ + ++A E P +++ ++P + +++ T+ V +N Sbjct: 93 VIDVIEKAGGMTEKAAIESVNLAVKLHDEMFIYVPEQGEAEQSLPEQQNEQGDTQMVVLN 152 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ EL +++ G+G KA AI+SYREE+G F ++E+L V G+G E+ L L Sbjct: 153 RATEVEL-QSLPGIGPAKATAIISYREEHGAFSSLEELMNVSGIGEKSYEKLAPYLRL 209 >UniRef50_B6XA89 Putative uncharacterized protein n=3 Tax=Providencia RepID=B6XA89_9ENTR Length = 124 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 6/123 (4%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 +K G+ +L+ L +S + A + T++ +Q+ + + Sbjct: 8 IKQGLGTVLMVAILCPLSVSAAVKKAETEKPVTSIMQ------SQNSDEIKSTNHLTSPD 61 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +V+IN ASAEELAR ++G+G +KAQAIV YRE++G F +E++ +V G+G + +E+N Sbjct: 62 QVNINQASAEELARKLSGIGKQKAQAIVEYREKFGAFNAIENILEVQGIGPAFLEKNREK 121 Query: 121 LTL 123 L L Sbjct: 122 LVL 124 >UniRef50_Q57134 Uncharacterized protein HI1008 n=20 Tax=Pasteurellaceae RepID=Y1008_HAEIN Length = 112 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 7/117 (5%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSI 64 +K L ++ L A + S+ A TA AQ AV +++I Sbjct: 1 MKTLFTSVVLCGALVVSSSFAEEKATXQTAQSVVTTQAEAQVAPAVV-------SDKLNI 53 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 N A+A E+ +++ G+G KKA+AIV YRE++G F E L +V G+G + +E+N + Sbjct: 54 NTATASEIQKSLTGIGAKKAEAIVQYREKHGNFXNAEQLLEVQGIGKATLEKNRDRI 110 >UniRef50_Q3XYU3 Competence protein ComEA helix-hairpin-helix region n=13 Tax=Enterococcus faecium RepID=Q3XYU3_ENTFC Length = 242 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 17 AGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAM 76 S + P E E + + +D E +++IN A+ EL + + Sbjct: 136 INFSAKIEDQQVLYIPAVGEELPEHLDQLASSEGKQPTADSEPPKININTATPSELQQ-I 194 Query: 77 NGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G+G KAQ I+ +REE G F+ VEDL+++ G+G VE+ +T+ Sbjct: 195 PGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKLKNFVTI 241 >UniRef50_Q8XIJ9 ComE operon protein n=10 Tax=Firmicutes RepID=Q8XIJ9_CLOPE Length = 260 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 39 AEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFK 98 AE + + K E + ++IN AS E L +NG+G KAQAI+ YR+E G FK Sbjct: 176 AEVTNSIPTNSSGDKGEKNESSVININTASKETLM-TLNGIGESKAQAIIDYRDEIGGFK 234 Query: 99 TVEDLKQVPGMGNSLVERNLAVLTL 123 +V+D+ V G+G +E+ +++ Sbjct: 235 SVDDITNVSGIGEKTLEKIKDKISI 259 >UniRef50_C7R5D7 Helix-hairpin-helix DNA-binding class 1 n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R5D7_JONDD Length = 261 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%) Query: 9 LITLSLACAGMSHSALAAA-SVAKPTAVETKAEAPAAQSKAAV----PAKASDEEGTRVS 63 + A G++ A A ++A+ + P V P ++ E ++ Sbjct: 140 VADALNAAGGLTTDAHPDAHNLARLVQDGEQILVPHKDDDPPVNVPSPTPSTAPETGPIN 199 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 IN A++E+L + + G+G AQ I+ R +GPF TV L +V G+G +++E LT Sbjct: 200 INTATSEDL-QTLPGIGPALAQRIIDDRTTHGPFPTVHSLDRVRGIGPTILENLTPHLT 257 >UniRef50_Q2RKY9 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKY9_MOOTA Length = 224 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 18/115 (15%) Query: 26 AASVAKPTAVETKAEAPAAQSKAAVPA-----------------KASDEEGTRVSINNAS 68 A ++A P + + P +A V A +S G +V+IN A Sbjct: 110 ALNLAAPLSDGQQVIVPRQGEEARVNAPAGAATGPGAAPGNPAGSSSSRTGGKVNINTAG 169 Query: 69 AEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 EL ++ G+G AQ I+ YR + GPF+T+EDL+ V G+G ++T+ Sbjct: 170 LAEL-DSLPGIGPTLAQRILDYRTQKGPFRTIEDLQNVSGIGAKKFADLKDLITV 223 >UniRef50_Q5LYL1 Late competence protein required for DNA binding and uptake n=4 Tax=Streptococcus RepID=Q5LYL1_STRT1 Length = 231 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 25 AAASVAKPTAVETKAEA-----PAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGV 79 A+ S + V K E + + + + ++++N A++E+L + ++G+ Sbjct: 128 ASLSDEEVIYVANKDENVSVLDQTGTGQVSDKGGQAVSKDGKINLNTATSEQL-QTISGI 186 Query: 80 GLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G K+A+ I++YRE +G F++V+DLK V G+G+ +++ L + Sbjct: 187 GAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESLYV 230 >UniRef50_Q1WU47 ComE operon protein 1 n=2 Tax=Lactobacillus salivarius RepID=Q1WU47_LACS1 Length = 229 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 35 VETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEY 94 +E ++E + + + +++++N A+ E+L + +NG+G KKA+ I+SYR+E+ Sbjct: 142 IELQSENTMSSDTSNSNTTEEAGDNSKINLNTATKEQLTQ-LNGIGDKKAELIISYRDEH 200 Query: 95 GPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G FKT+++LK V G+G+ LT+ Sbjct: 201 GKFKTIDELKNVSGIGDKTFAAISDKLTV 229 >UniRef50_UPI00016BFF02 late competence protein (DNA binding and uptake) n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFF02 Length = 216 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Query: 8 LLITLSLACAGMSHSA-LAAASVAKPTAVETKAEAPA------AQSKAAVPAKASDEEGT 60 L+ L + G+++ A LA ++A +K PA ++A + + AS + Sbjct: 94 LINDLVVMAGGLTNDADLATINLAATVTTNSKVYIPAFDDEVPVMTQATISSIASQSDDG 153 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 + IN A+ EL ++ G+G KA +I+SY E+ G F + ++ V G+G++ ++ + Sbjct: 154 LIHINTATLAEL-DSLPGIGPVKATSILSYIEQNGEFTDINEILDVSGIGDATLDNIKDL 212 Query: 121 LTL 123 +T+ Sbjct: 213 ITI 215 >UniRef50_UPI0001C426BA late competence operon required for DNA binding and uptake n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C426BA Length = 206 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Query: 15 ACAGMSHSAL-AAASVAKPTAVETKAEAPAAQSK-----AAVPAKASDEEGTRVSINNAS 68 + G+ A ++A+ E P + ++S+ G ++S+N AS Sbjct: 92 SAGGLLPDAFGDGINLAQLLVDEMVIYVPYLGEEEIPLTMGAETQSSNAAGAKISLNKAS 151 Query: 69 AEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 EL + G+G KA+AI+SYREE G F++VE+L V G+G E+ ++T+ Sbjct: 152 QAEL-ETLPGIGPAKAEAILSYREEQGAFQSVEELMNVSGIGPKSFEKLQELVTV 205 >UniRef50_C8NGS6 Competence protein ComEA n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NGS6_9LACT Length = 214 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 9/121 (7%) Query: 11 TLSLACAGMSHSALAAA-------SVAKPTAVETKAEAPAAQ-SKAAVPAKASDEEGTRV 62 L A G + A V K E ++ ++ P K + +V Sbjct: 94 DLIEAAGGFTPLADDQKLNLAQLLEDQMVIVVPKKGEEVNSELAQTPTPQKKEVGKEGKV 153 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +IN A+ EEL + + G+G KKA+AI+ YR++ G FK E+L +V G+G L E + Sbjct: 154 NINTATVEEL-KTLKGIGEKKAEAIIEYRKQNGSFKNKEELMKVRGIGKKLYESFQERVI 212 Query: 123 L 123 + Sbjct: 213 V 213 >UniRef50_D0LIE3 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIE3_HALO1 Length = 158 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 3/111 (2%) Query: 15 ACAGMSHSALAAASVAKPTAVETK-AEAPAAQSKAAVPAKASDEE-GTRVSINNASAEEL 72 A A + + LA+AS + P ++K A APA + AK+ + ++++N ASAE+L Sbjct: 40 AVAASAPAVLASASDSAPQPTQSKRASAPADDGDSGAKAKSGGKSLRGKLNLNTASAEQL 99 Query: 73 ARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + + G+G KA IV YRE++G F+ V DL++V G+G +++ L++ Sbjct: 100 -QLLPGIGAAKAGRIVGYREKHGKFRRVRDLRRVKGIGFKTLQKLSPYLSI 149 >UniRef50_B5EQJ4 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EQJ4_ACIF5 Length = 135 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN A A L A+ G+G KAQA++ YR+ +GPF++V++L V G+G L+ER VL Sbjct: 24 VNINTADATAL-DALPGIGPAKAQAVLEYRQAHGPFRSVDELTSVHGIGPRLLERLRPVL 82 Query: 122 TL 123 +L Sbjct: 83 SL 84 >UniRef50_A1R6X3 Putative comEA protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R6X3_ARTAT Length = 276 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 14/129 (10%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT------- 60 + + A S++ L ++A+ + K P P Sbjct: 146 VFQAIDAAGGAASNAELNGLNLAEVLSDGVKIHVPKVGEVPQPPPSPLAGGSGSPGATAG 205 Query: 61 ------RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 +V+IN AS EEL + VG AQ I+ +R+E+GPF +VE+L V G+G L+ Sbjct: 206 PAAGGAKVNINTASLEELG-TLPRVGPVTAQGIIDWRKEHGPFASVEELDAVDGIGPKLM 264 Query: 115 ERNLAVLTL 123 E ++T+ Sbjct: 265 ESLKELVTV 273 >UniRef50_A7BWU4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Beggiatoa sp. PS RepID=A7BWU4_9GAMM Length = 143 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 46/70 (65%) Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 A++ E ++ IN A A LA +NG+G KK AIV YRE++GPF+++ DL +V G+G Sbjct: 32 ANETEVEKIDINTADALLLAYKLNGIGEKKGIAIVEYREKHGPFQSIYDLDKVYGIGLKT 91 Query: 114 VERNLAVLTL 123 +E+N + + Sbjct: 92 IEKNKDKMMV 101 >UniRef50_Q4ZQA5 Competence protein ComEA helix-hairpin-helix region n=10 Tax=Pseudomonas RepID=Q4ZQA5_PSEU2 Length = 120 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 1/116 (0%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 + L A + + AA ++P E + + PA A ++ RV++N A Sbjct: 5 IFSALIFALLTSASVVVNAAPASQPAMSEPAVSH-SPMLEGTAPAMAHEQRKDRVNLNTA 63 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ L + + G+G KA AIV+YRE G F ++++L +V G+G +++ERN L + Sbjct: 64 DAQTLQKELAGIGKNKADAIVAYREANGDFTSIDELIEVKGIGKAILERNREKLAI 119 >UniRef50_C2AU83 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AU83_TSUPA Length = 277 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 27 ASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQA 86 A P + + S A + + +V+IN ASA EL R + GVG A A Sbjct: 182 ADGKSPVKLRSSVVPAGTGSAAGGASASGPAPSAQVNINTASAAELDR-LPGVGPATAAA 240 Query: 87 IVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 I++YRE+ GPFKTV+DL +V G+G++ + + + T+ Sbjct: 241 IIAYREQNGPFKTVDDLGKVAGIGDAKLAKITPMATV 277 >UniRef50_C4FEZ1 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FEZ1_9BIFI Length = 217 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 61/109 (55%), Gaps = 4/109 (3%) Query: 15 ACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELAR 74 + G ++ + A + + ++++++ +A + ++ +G V++N A+ EEL Sbjct: 113 SAGGRTNRSQAQHDSDQEKSGQSQSDSTSA---SQAERFSTQSDGGLVNLNTATLEEL-D 168 Query: 75 AMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +++G+G A+ I+ YR+ G F +V+ L +V G+G +E+ A +T+ Sbjct: 169 SISGIGPVTARKILDYRQRIGMFSSVDQLLEVSGIGVKTLEKMRAKVTV 217 >UniRef50_A1HQZ8 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQZ8_9FIRM Length = 187 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 +L ++ A + + ++A+P P A S +V++N A Sbjct: 73 VLDAVNYAGGLAAGADSTRVNLAQPLKDGMHVHVPVVVLAAGPGGSNSAGGAGKVNVNTA 132 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 SA EL + + G+G AQ I+ YR+ G FK +E++K+VPG+G + + ++L Sbjct: 133 SANELDK-LPGIGPALAQRIIDYRQSIGGFKDLEEVKKVPGIGEAKFNQIKDKISL 187 >UniRef50_C4V2X7 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2X7_9FIRM Length = 188 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Query: 9 LITLSLACAGMSHSA-LAAASVAKPTAVETKAEAP---AAQSKAAVPAKASDEEGTRVSI 64 + A G+ +A + ++A + P + + + ++++ Sbjct: 71 VADAVNAAGGVIETADVDHINMAAHLEDGMQIRVPVRLHDAEEKGAATSSGRQADGKINL 130 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N A+ +EL + + G+G + IV YRE G F+T++D+K+V G+G + E+ +TL Sbjct: 131 NTATEKEL-QELPGIGPAMSARIVEYRESNGAFQTIDDIKKVRGIGAAKFEKLKDRVTL 188 >UniRef50_Q5WHH4 Late competence protein ComEA n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WHH4_BACSK Length = 204 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 9/115 (7%) Query: 16 CAGMSHSAL-AAASVA------KPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNAS 68 G + SA A ++A V + E A AV +D E T ++IN A+ Sbjct: 91 AGGFTDSANREAVNLALRLEDEMVVYVPKEGEDEGAGPVLAVEMNETDHEDT-ININEAT 149 Query: 69 AEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +L + G+G KA AI+ YREE G F TVE+L V G+G E ++ + Sbjct: 150 EADLL-TLQGIGPSKAAAIIGYREENGSFATVEELMNVSGIGEKTFEALEPLIRV 203 >UniRef50_C0W2X2 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W2X2_9ACTO Length = 253 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 30 AKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVS 89 A+ A +A A Q+ + G +++N A A L + G+G A+ IVS Sbjct: 161 AQQPAGSGSGQATAGQTDGQPAHSQGAQAGGLINLNTADAAALED-LPGIGPALAERIVS 219 Query: 90 YREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +RE +GPF TVEDL VPG+G + +E T+ Sbjct: 220 HRESHGPFATVEDLLDVPGIGQAKLEALRDRATV 253 >UniRef50_C8WQ77 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQ77_ALIAD Length = 301 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%) Query: 20 SHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGV 79 A + A P+ E + A K + G +++IN A E L + GV Sbjct: 187 VQDVGLALAAASPSGHEVSTTSRDGTGGRA--RKHALTAGQKININTADLETL-ETLPGV 243 Query: 80 GLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G K+A AI++YR+ +GPF+ +E L+ V G+G + + ++T Sbjct: 244 GPKRAAAILAYRQAHGPFRDLESLRHVKGIGEKTLAKWKDLITF 287 >UniRef50_B8KX36 Competence protein ComEA helix-hairpin-helix repeat region n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX36_9GAMM Length = 100 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 46/66 (69%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 E V+IN A+AE+L+ A+ G+G+ KA IV YRE GPF+ +++L +V G+G S V++N Sbjct: 34 EDLPVNINTATAEQLSDALKGIGMSKAVKIVEYREANGPFEHIDELSEVNGIGESTVDKN 93 Query: 118 LAVLTL 123 ++ L Sbjct: 94 RQIIVL 99 >UniRef50_C7GZM9 Competence protein CelA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZM9_9FIRM Length = 211 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 8/127 (6%) Query: 4 GIKALLITLSLACAGMSHSA-------LAAASVAKPTAVETKAEAPAAQSKAAVPAKASD 56 K+ + A G++ A A + E + + + ++ Sbjct: 86 SKKSRIEDAIKAAGGLTAKADISKINRAAFVKDGDKIYIPKSGEETSGSENSRSDGRDNE 145 Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 +G +V++N A A +L + +NG+G A+ I+ YRE G FK VEDL +VPG+G V++ Sbjct: 146 RDGGKVNLNTADATKL-QTVNGIGPATAEKIIDYRENNGNFKKVEDLVKVPGIGPKTVQK 204 Query: 117 NLAVLTL 123 + T+ Sbjct: 205 LIKEFTV 211 >UniRef50_C5BCK2 Putative uncharacterized protein n=2 Tax=Edwardsiella RepID=C5BCK2_EDWI9 Length = 114 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 37/94 (39%), Positives = 56/94 (59%) Query: 30 AKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVS 89 + P A P+ S E RV+IN ASA+ L+ ++G+GL+KA+AIV+ Sbjct: 21 SVPQAATAPTSVPSTSSVTHSSGAVESAEHGRVNINQASAQALSEGLSGIGLEKARAIVA 80 Query: 90 YREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +RE++G F +E L QV G+G +L+E+N A L L Sbjct: 81 FREQHGVFSRLEQLLQVKGIGAALLEKNRARLAL 114 >UniRef50_A5WC41 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WC41_PSYWF Length = 126 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 5/101 (4%) Query: 27 ASVAKPTAVETKAEAPAAQSKAAVPAKASD----EEGTRVSINNASAEELARAMNGVGLK 82 +V P A + A A Q+ A + + + E+ V +N+A+ EL + + G+G Sbjct: 26 QAVLMPGAWAQQCFADAHQAYAHLINEQQNQQLAEQSVTVHLNSATEGELTQ-LTGIGSN 84 Query: 83 KAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 KAQ I+ YR+ +GPF +V+DL +V G+G+ V +N A +++ Sbjct: 85 KAQQIILYRDAFGPFGSVDDLAKVKGIGDKTVAKNRARMSI 125 >UniRef50_B5Y881 ComEA protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y881_COPPD Length = 237 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 16/106 (15%) Query: 33 TAVETKAEAPAAQSKAAVPAKASDEEGT---------------RVSINNASAEELARAMN 77 V TKAE +P+ + G ++IN A ++L A+ Sbjct: 132 VYVPTKAEQQNVDGSQGIPSSTAQNSGGVVIGSSESAGSSKSSLININTADEKQL-DALP 190 Query: 78 GVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G+G A IV YR+ GPFK++E++K V G+G ++T+ Sbjct: 191 GIGPTLAARIVEYRQANGPFKSIEEVKNVSGIGEKRFADIKDLITV 236 >UniRef50_Q03VU1 DNA uptake protein related DNA-binding protein n=2 Tax=Leuconostoc mesenteroides RepID=Q03VU1_LEUMM Length = 211 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 7/120 (5%) Query: 10 ITLSLACAGMSHSALAAASVAKP------TAVETKAEAPAAQSKAAVPAKASDEEGTRVS 63 ++ A + + + ++A+ V + E +A + + + ++ Sbjct: 93 TAIAQAGGTLEEADMQQVNLAQKLTDGQIVYVPMRGETSSAPVNNGSTSAVTTTDNEVIN 152 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +N A+ EL + ++G+G+KKA+ I++YREE+G FK++E++KQ+ G+G E +T+ Sbjct: 153 LNTATVVEL-QTLDGIGVKKAEQIIAYREEHGGFKSIEEIKQISGIGEKRFEALKDKVTV 211 >UniRef50_C2BUY4 Possible helix-hairpin-helix DNA-binding motif-containing protein n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BUY4_9ACTO Length = 363 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 13/125 (10%) Query: 11 TLSLACAGMSHSALAAASVAKPTA------VETKAEAPA------AQSKAAVPAKASDEE 58 L +A + L+ ++A+P V E P A S K++ Sbjct: 240 ALEVAGGALPEGDLSTLNLARPLTDGEMIYVPRPGETPPPSVGGNANSAPDGGTKSAGGA 299 Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 G +V++N A L + ++G+G AQ I+ YRE G F +V+ L +V G+G +L+ R Sbjct: 300 GDKVNLNTADLGTL-QTLSGIGPALAQRILDYRESNGRFASVDQLDEVSGIGPALMSRLR 358 Query: 119 AVLTL 123 + + Sbjct: 359 DHVCV 363 >UniRef50_Q8EPV5 Late competence protein (DNA binding and uptake) n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPV5_OCEIH Length = 198 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 1/113 (0%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAE 70 + LA ++ + ++A+ E P + + ++ ++ IN AS + Sbjct: 86 VIELAGGFSKNADQSQVNLAQLVQDEMIIAVPEQGEQETNISSGINDSNDKIRINYASVQ 145 Query: 71 ELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 E+ + + G+G KA+ I YREE G F+ +EDL + G+G +E + + Sbjct: 146 EIEQ-LPGIGPSKAETIFQYREENGLFRELEDLLNISGIGEKTIESLRDYIQI 197 >UniRef50_D2LT80 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LT80_BACS4 Length = 201 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 3/110 (2%) Query: 16 CAGMSHSAL-AAASVAKPTAVETKAEAPAA-QSKAAVPAKASDEEGTRVSINNASAEELA 73 G + +A A ++A+ E P+ + + S+ +V IN AS EL Sbjct: 92 AGGFTENAEKNALNLAEKCFDEMVIYVPSQFEGEDIGVVLQSENTDGKVRINIASEGELT 151 Query: 74 RAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + G+G KA+AI+ +REE G F+ +ED+ VPG+G +E + + Sbjct: 152 E-LPGIGPAKAKAIIHFREENGHFQKIEDVVNVPGIGEKTLENIREYIRV 200 >UniRef50_UPI0001C358FF helix-hairpin-helix repeat-containing competence protein ComEA n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C358FF Length = 255 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 42 PAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 P + + +V++N A+ EEL + G+G KA I++YRE +G F+ +E Sbjct: 175 PGMAAAGSGSEPGGSAAKEKVNLNTATREELM-TLKGIGEAKADDIIAYRESHGGFQKIE 233 Query: 102 DLKQVPGMGNSLVERNLAVLTL 123 D+K++ G+ N+ E+ +T+ Sbjct: 234 DIKKISGIKNAAFEKIKDDITV 255 >UniRef50_C4U1C4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U1C4_YERKR Length = 117 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 5/117 (4%) Query: 12 LSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS-----KAAVPAKASDEEGTRVSINN 66 ++ A S S PT + P + A SD+ ++IN+ Sbjct: 1 MAYAVPSPSEGKALNPSGKTPTKGHVAPQIPVKTTHDKTAVTATVGNPSDDVQHPININS 60 Query: 67 ASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A AE+LA+++NG+G KKA+AIV+YRE++G F E L +VPG+G S +E+N L + Sbjct: 61 ADAEQLAQSLNGIGRKKAEAIVNYREQFGFFTDAEQLLEVPGIGPSFLEKNSGKLRM 117 >UniRef50_C1DEM9 ComEA-related protein n=3 Tax=Pseudomonadaceae RepID=C1DEM9_AZOVD Length = 110 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 47/81 (58%) Query: 42 PAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 +K A A +V +N A A L R + G+G KAQAIV YR+ +GPF +V+ Sbjct: 28 KTGGAKPATVQPAQPVATVKVDLNAADAATLERDLLGIGPAKAQAIVDYRQAHGPFASVD 87 Query: 102 DLKQVPGMGNSLVERNLAVLT 122 +L +V G+G +++++N L+ Sbjct: 88 ELLEVKGIGAAILDKNRDRLS 108 >UniRef50_C4UHG5 Putative uncharacterized protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UHG5_YERRU Length = 132 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 48/132 (36%), Positives = 69/132 (52%), Gaps = 9/132 (6%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAAS--------VAKPTAVETKAEAPAAQSKAAVPA 52 M + K L + L LA +A+ AA P A+ SK P+ Sbjct: 1 MNNKGKTLALVLLLASFTAPFTAVMAAPNQPQENQQAKSPKVSHQLADKHRDTSKLKTPS 60 Query: 53 KASDEE-GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 S+ E +++ +N ASAEELA ++G+GLKKAQAIV YREE+G F +E L +V G+G Sbjct: 61 PGSNREASSQIDVNKASAEELAAGLSGIGLKKAQAIVRYREEFGFFSQLEQLLEVSGIGP 120 Query: 112 SLVERNLAVLTL 123 +ERN + + Sbjct: 121 MFIERNRQKIKI 132 >UniRef50_Q03QM7 DNA uptake protein related DNA-binding protein n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03QM7_LACBA Length = 231 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 1/104 (0%) Query: 19 MSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNG 78 ++ + ET P+ + ++A+ V++N A+ EL + + G Sbjct: 128 LTDQQQVYIPLKGEKVSETAGSVPSGSTATTASSQATGTPVAVVNLNTATVTELQQ-LTG 186 Query: 79 VGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +G KKAQ IV YR ++G F++V+DL QVPG G V LT Sbjct: 187 IGEKKAQKIVDYRTDHGHFQSVKDLAQVPGFGEKTVANLQDQLT 230 >UniRef50_D0ME87 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0ME87_RHOM4 Length = 131 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 30 AKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVS 89 +P T EA + AA + + E +++N A+AEEL R + +G A+ I+ Sbjct: 40 QQPVPPPTAEEAARFREGAARMRQVLEPE--PLNVNTATAEELER-LPRIGPVLARRIIE 96 Query: 90 YREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 YRE +GPF+ +E+L+ VPG+G + ++ + Sbjct: 97 YREAHGPFRRIEELEAVPGIGPKTLAELAPLIRV 130 >UniRef50_C9LCS3 Competence protein CelA n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LCS3_RUMHA Length = 201 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 1/108 (0%) Query: 16 CAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARA 75 G++ +++ + + + Q + + + E G +++IN A EL + Sbjct: 94 TTGINQASVLSDGEKLQIYTIEEVQQMEVQPEMFSGSSENTESGGKININTADLTEL-QE 152 Query: 76 MNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + GVG KKAQ+I+ YRE G F+ +E L++VPG+ ++ +T+ Sbjct: 153 IPGVGEKKAQSIMEYREACGGFQNIEQLQEVPGIKGKTFDKVKDYITV 200 >UniRef50_UPI000178992B competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178992B Length = 220 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Query: 21 HSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVG 80 SA A+V+ ++ P + ++ + +++N A A L + G+G Sbjct: 119 SSASDQAAVSPASSPPEAVGQPVSANEPPALPPSIPLPSGLINVNTADAATLME-LPGIG 177 Query: 81 LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 KA+AI+ YR ++GPF+T DL V G+G ++E+ + L Sbjct: 178 EAKAKAIIDYRNQFGPFRTQADLMNVKGIGPKMLEKMKPYVGL 220 >UniRef50_A4Y5K0 Competence protein ComEA helix-hairpin-helix repeat protein n=7 Tax=Shewanella RepID=A4Y5K0_SHEPC Length = 127 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 45/107 (42%), Positives = 65/107 (60%), Gaps = 3/107 (2%) Query: 17 AGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAM 76 G++ +AL A V+ A TKAEA Q++A AK++ E V+IN AS EEL + + Sbjct: 24 LGVTLAALLAYPVSAAEA-PTKAEAKM-QAQAKADAKSAVAEVLTVNINTASVEEL-QEL 80 Query: 77 NGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G+G KAQAIV YR + G F ++DL V G+G L+E+N ++ L Sbjct: 81 KGIGAAKAQAIVDYRTQNGKFNAIDDLANVSGIGAKLIEQNRHLIKL 127 >UniRef50_C0D545 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D545_9CLOT Length = 243 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 20/132 (15%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPA-------------------AQSKAAVP 51 + LA +A + ++A+ A K E P A Sbjct: 113 AVDLAGGFGPEAAWSYLNLAQEIADGMKIEVPTERQAEEWEKEGRAGVTAGPVSQGGAGG 172 Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 ++ +V+IN A EEL + G+G KA+ I+ YRE YGPF+ +ED+ + G+ + Sbjct: 173 RESGSAGSAKVNINTAGKEELM-TLKGIGESKAEDIIRYRETYGPFERIEDIMNISGIKD 231 Query: 112 SLVERNLAVLTL 123 + ++ +T+ Sbjct: 232 AAFQKIKDSITV 243 >UniRef50_C9KN34 Competence protein n=3 Tax=Veillonellaceae RepID=C9KN34_9FIRM Length = 224 Score = 101 bits (251), Expect = 9e-21, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 16/128 (12%) Query: 11 TLSLACAGMSHSALAAA-SVAKPTAVETKAEAP---------AAQSKAAVPAKASDEEG- 59 AC G+ +A A ++A+ + P AA+S + PA S Sbjct: 98 DAVNACGGLLPTADAEKVNMAQVLKDGQQVRVPEKAVPETTAAAKSGSVNPAAKSGTSSK 157 Query: 60 ----TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 V+IN ASAEEL + G+G AQ I+ +RE G F +ED+K+V G+G + E Sbjct: 158 AAPSGPVNINTASAEEL-DTLPGIGPAMAQRIIEFRETEGAFTAIEDIKKVKGIGEAKFE 216 Query: 116 RNLAVLTL 123 + + + Sbjct: 217 KMKDKICI 224 >UniRef50_A0Z742 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z742_9GAMM Length = 114 Score = 101 bits (251), Expect = 9e-21, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 46/67 (68%) Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 + ++V+IN AS E L+ ++ G+GL KA IV +RE YGPF+++++L +V G+G S++ Sbjct: 47 SQSSQVNINTASPELLSDSLLGIGLAKAYRIVEHRESYGPFESIDELVEVKGIGESIIAS 106 Query: 117 NLAVLTL 123 N + L Sbjct: 107 NRDRIVL 113 >UniRef50_C5RDZ4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RDZ4_CLOCL Length = 249 Score = 101 bits (251), Expect = 9e-21, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 28 SVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAI 87 +VA + + A + K ++++ +V IN A+ E+L ++ G+G ++ I Sbjct: 154 AVAVNNIISSNNSAGSNNKKGDDKGTSTEKTDVKVDINTATKEQLM-SLKGIGETYSEKI 212 Query: 88 VSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + YRE+ GPFKT+E+LK V G+G E+ + + Sbjct: 213 IEYREKNGPFKTIEELKNVSGIGEKTFEKIKDSIEV 248 >UniRef50_A4AAS4 Putative uncharacterized protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4AAS4_9GAMM Length = 110 Score = 101 bits (251), Expect = 9e-21, Method: Composition-based stats. Identities = 42/110 (38%), Positives = 66/110 (60%), Gaps = 2/110 (1%) Query: 14 LACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELA 73 LA A + + L V+ + EA ++A V + +E+ V+IN+A+A ELA Sbjct: 2 LAVAAFA-AQLCLPVAPAQAQVQVQGEA-MRVAEAVVVEQKLEEQSAVVNINSATALELA 59 Query: 74 RAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + G+G KA+AIV YREE+GPF+++++L +V G+G + VERN L L Sbjct: 60 EGLTGIGGSKAEAIVRYREEFGPFESIDELSEVTGIGAATVERNRQRLRL 109 >UniRef50_Q71ZI6 DNA-binding protein, ComEA family n=18 Tax=Listeria RepID=Q71ZI6_LISMF Length = 211 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 5/117 (4%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEE----GTRVSINN 66 + +A + + + ++A+ E + A+ EE ++++N+ Sbjct: 95 VVKIAGGLTAEADCSKLNLAEKLKDEMSIYVYKKGEEGPATQGANTEEASTGSAKINLNS 154 Query: 67 ASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ ++L + + G+G KA AI+ YRE+ G F+T+EDLK V G+G VE+ L + Sbjct: 155 ATKDDLQQ-VPGIGESKATAIIEYREKEGLFQTIEDLKNVSGIGEKTVEKLKEYLDV 210 >UniRef50_A4J7G9 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J7G9_DESRM Length = 213 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 13/125 (10%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR--------- 61 L+ ++ + P+ E +A VP++ + ++ Sbjct: 89 DADLSMLNLAAPLKDGQKLPIPSKAEQQASEQRPNQMDNVPSQGVALKASKPLTPTVAQG 148 Query: 62 ---VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 V+IN A +EL ++ G+G A+ I+ +RE GPF+ EDLK V G+G+ E Sbjct: 149 TGLVNINTAGPQEL-DSLPGIGPALAERIIQHREANGPFQCTEDLKNVSGIGDKKFEDLQ 207 Query: 119 AVLTL 123 +TL Sbjct: 208 HRITL 212 >UniRef50_Q1AVU6 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVU6_RUBXD Length = 107 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V IN A AEEL + VG A+AI+ YR GPF+TVE+L++VPG+G + +E+ Sbjct: 47 VDINTADAEELEE-LPEVGPATAEAIIEYRLANGPFRTVEELEEVPGIGPATLEQIRPFA 105 Query: 122 TL 123 T+ Sbjct: 106 TV 107 >UniRef50_A9B5P5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5P5_HERA2 Length = 228 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 16/130 (12%) Query: 9 LITLSLACAGMSHSA-------LAAASVAKPTAVETKAEAPAAQSKAAVPAKA------- 54 + L A G+ A A A+ V E PA ++ +A Sbjct: 99 IDDLVQAAGGLDSEADSQALNLAAYLQDAQHVHVPVVGETPAPTTQPTAEPQAIAVAAPT 158 Query: 55 -SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 S + T ++IN ASA EL ++ +G AQ IV+YREE GPF T+E L++V G+G S Sbjct: 159 ASARQPTLININTASAAEL-ESLPKIGQAIAQRIVAYREENGPFTTIEALQEVKGIGAST 217 Query: 114 VERNLAVLTL 123 +T+ Sbjct: 218 FAEIEPFITI 227 >UniRef50_C1PB54 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Bacillus RepID=C1PB54_BACCO Length = 238 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 E +V+IN A +L + G+G KA AI+ YRE+ GPF+ EDLK V G+G+ + Sbjct: 172 EAAAQVNINTADQTQL-ETLPGIGPSKAAAIIEYREKNGPFQKPEDLKNVSGIGDQTFAK 230 Query: 117 NLAVLTL 123 +TL Sbjct: 231 IENSITL 237 >UniRef50_B2K6W2 Competence protein ComEA helix-hairpin-helix repeat protein n=30 Tax=Yersinia RepID=B2K6W2_YERPB Length = 148 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 40/104 (38%), Positives = 60/104 (57%) Query: 20 SHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGV 79 S + A P K A ASD + +++IN+A+AE+LA+ +NG+ Sbjct: 45 SAADNGAKVKGTPAQSVEKISDNTKNVAADSSVNASDNQQHQININSANAEQLAQFLNGI 104 Query: 80 GLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G KKA+AI++YRE+ GPF V+ L +VPG+G S +ERN + L Sbjct: 105 GRKKAEAIITYREQSGPFTHVDQLLEVPGLGPSFLERNNGKIKL 148 >UniRef50_C2LN90 Competence protein ComEA helix-hairpin-helix repeat protein n=3 Tax=Proteus RepID=C2LN90_PROMI Length = 124 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 2 KHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR 61 K + A + ++ L G+ S L+ A P+ E + A AS + + Sbjct: 6 KKTLSAFMASICL-TLGLGLSPLSYADDISPSTSTMLIEKGDQKESAVSEVNASAQ--GK 62 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 + IN+A+ +EL + G+G KAQAI+ YRE+ G F + +DL +V G+G L+E+N ++ Sbjct: 63 LDINSATLDELM-TLKGIGKAKAQAIIDYREKVGRFASFDDLAKVFGIGMKLIEQNKDLI 121 Query: 122 TL 123 + Sbjct: 122 II 123 >UniRef50_A4EC57 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EC57_9ACTN Length = 244 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Query: 29 VAKPTAVETKAEAPAAQSKAAVPAKASDEEG-----TRVSINNASAEELARAMNGVGLKK 83 + V T E A+ ++A V AS G V+IN ASA EL + ++G+G Sbjct: 146 DGQKIHVPTVGEQQASIAEAGVDGGASASLGVSGATGLVNINTASAAEL-QTLSGIGPSM 204 Query: 84 AQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 AQ+I+ R + G F +V+DL +V G+G + + + + Sbjct: 205 AQSIIDERTKNGAFASVDDLMRVSGIGEKKLAKIKDCICV 244 >UniRef50_A3DET3 Competence protein ComEA helix-hairpin-helix repeat protein n=4 Tax=Clostridium RepID=A3DET3_CLOTH Length = 296 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 37 TKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGP 96 TK A + A ++ S ++++IN A+ EEL ++ G+G A IV+YRE+ G Sbjct: 210 TKDSGGAVVGENASSSENSKTANSKININTATVEEL-DSLPGIGPAIAAKIVAYREQNGK 268 Query: 97 FKTVEDLKQVPGMGNSLVERNLAVLTL 123 FK++ED+ V G+G S +T+ Sbjct: 269 FKSIEDIMNVSGIGQSKFNNIKDFITV 295 >UniRef50_UPI0001C4262A putative S-layer protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4262A Length = 543 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 34 AVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREE 93 VE + S + + ++IN A EEL + + GVG AQ I+ YR+ Sbjct: 454 TVEKQNGNGQPGSDPIIDDPIDESPSYPININTAGFEEL-QHITGVGDVIAQRIIDYRQA 512 Query: 94 YGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 GPF+ + ++K V G+G++ ER +T+ Sbjct: 513 NGPFQAIAEIKNVSGIGDATFERMKDQITV 542 >UniRef50_B5JRK5 Putative uncharacterized protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRK5_9GAMM Length = 89 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 42/61 (68%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN A+AE+LA ++G+G KAQAIV++R+ GPF + + L +V G+G +E N + Sbjct: 26 VNINTATAEQLAEHLDGIGPAKAQAIVAFRQANGPFSSADQLVEVKGIGLRTLESNRDAI 85 Query: 122 T 122 T Sbjct: 86 T 86 >UniRef50_C2KND1 Possible helix-hairpin-helix repeat-containing competence protein ComEA n=2 Tax=Mobiluncus mulieris RepID=C2KND1_9ACTO Length = 403 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 43/66 (65%), Gaps = 1/66 (1%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 +G +V++N A A +L + ++G+G AQ I+ YR++ G F ++E L +V G+G +++ER Sbjct: 339 KGDKVNLNTADATDL-QTLSGIGPALAQRILDYRKKNGQFHSIEQLDEVSGIGPAMMERL 397 Query: 118 LAVLTL 123 + L Sbjct: 398 RDHVIL 403 >UniRef50_D1B5R3 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5R3_THEAS Length = 235 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 42 PAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 P ++ S +V++N A EEL +++ GVG K AQAI+ YR GPF+ V+ Sbjct: 153 PQGGVRSPSSPVPSPAPAGKVNVNRAGLEEL-KSLPGVGDKTAQAIIDYRTANGPFRDVK 211 Query: 102 DLKQVPGMGNSLVERNLAVLTL 123 DL +V G+G +E+ ++ + Sbjct: 212 DLMKVKGIGPKKLEKMAPLVEV 233 >UniRef50_B8H8S8 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8S8_ARTCA Length = 274 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 29 VAKPTAVETKAEAPAAQS-----KAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKK 83 + + + E PAA + + S G R++IN A EEL A+ VG Sbjct: 176 DGQKIHIPRQGEQPAAGGAGSLGQGSTAPPGSAGAGARININTAGVEEL-DALPKVGPVL 234 Query: 84 AQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 AQ IV +R+E+GPF VEDL V G+G ++E L ++T+ Sbjct: 235 AQRIVDWRKEHGPFSAVEDLDAVDGVGPKMLEALLPLVTV 274 >UniRef50_A5KJM8 Putative uncharacterized protein n=2 Tax=Ruminococcus RepID=A5KJM8_9FIRM Length = 225 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAA---VPAKASDEEGTRVSI 64 + ++ A ++A A + A+ + P+ V + +++I Sbjct: 108 VFEAIAKAGGLTENAAAEAVNQARVVVDGEQIYVPSLDEVKGAGVVSEVTERTDDGKINI 167 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N A EEL + GVG KAQ+I++YREE+G F+++E+L Q+ G+ + + +T+ Sbjct: 168 NTAEKEELM-TLTGVGEAKAQSIIAYREEHGGFQSIEELMQIEGIKEGVFNKIKEDITI 225 >UniRef50_B5CMB0 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CMB0_9FIRM Length = 225 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 36 ETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYG 95 + +AE+ + Q + + + +++IN A EEL + G+G KA+ I+ YREE+G Sbjct: 139 QDEAESYSLQDQGLESNAGTADTRGKININTAGKEELM-TLPGIGEAKAEKILRYREEHG 197 Query: 96 PFKTVEDLKQVPGMGNSLVERNLAVLTL 123 F+++ED+ Q+ G+ + + +T+ Sbjct: 198 AFRSIEDVMQIEGIKEGVFNKIKEDITI 225 >UniRef50_A6WDK9 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Actinomycetales RepID=A6WDK9_KINRD Length = 304 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 3/114 (2%) Query: 11 TLSLACAGMSHSALAAASVAKPTAV--ETKAEAPAAQSKAAVPAKASDEEGTRVSINNAS 68 L+ A + + L A ++A+ + P A A + G + +N A+ Sbjct: 191 ALTAAGGALPGADLDAVNLARVLVDGEQVLVPVPGQHPVAVPAAPGAGSRGGPLDLNAAT 250 Query: 69 AEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 EEL + GVG A IV++REE GPF+ VEDL +VPG+G +++ ++T Sbjct: 251 PEEL-DGLPGVGEVLAGRIVAWREENGPFRDVEDLGEVPGIGPKVLDGLRDLVT 303 >UniRef50_A9ELT7 DNA-binding protein, putative n=1 Tax=Shewanella benthica KT99 RepID=A9ELT7_9GAMM Length = 105 Score = 99 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 2/106 (1%) Query: 19 MSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE-EGTRVSINNASAEELARAMN 77 M + ++A +A ++ A ++QSK + S + + V+IN +S +L + Sbjct: 1 MKSTLVSATLMAAIFSLSVYAGDVSSQSKTIHQKENSHQVQQLNVNINTSSIAQLV-LLK 59 Query: 78 GVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G+G KA+AIV YRE G F+ + DL V G+G LVE+N L+L Sbjct: 60 GIGESKAKAIVEYRESNGKFEVIGDLSNVKGIGPKLVEKNRMFLSL 105 >UniRef50_Q2SJI1 DNA uptake protein and related DNA-binding protein n=2 Tax=Gammaproteobacteria RepID=Q2SJI1_HAHCH Length = 101 Score = 99.6 bits (247), Expect = 2e-20, Method: Composition-based stats. Identities = 35/78 (44%), Positives = 51/78 (65%) Query: 46 SKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQ 105 + +A S E+ V+IN A AE LA+A+NGVGLKKA+AI+ +R GPFK + +L Sbjct: 23 TDSAPQQTQSAEQQNVVNINTADAEALAKALNGVGLKKAEAIIEFRTTNGPFKDISELAL 82 Query: 106 VPGMGNSLVERNLAVLTL 123 V G+G VE+N +++ L Sbjct: 83 VKGIGEKTVEKNRSLIVL 100 >UniRef50_B6G1L2 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1L2_9CLOT Length = 223 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 43 AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED 102 + + +G V+IN A+ E+L + GVG A I++YREE G FK++ED Sbjct: 144 STSGATQTSGGNAQGQGGLVNINTATLEQL-DTLPGVGEATANKIITYREENGGFKSIED 202 Query: 103 LKQVPGMGNSLVERNLAVLTL 123 LK V G+G+ E + + + Sbjct: 203 LKNVKGIGDKKFEDMKSSICV 223 >UniRef50_A5ZYC6 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZYC6_9FIRM Length = 228 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Query: 15 ACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELAR 74 + + + PT E + A A + A P + + V+IN A A L + Sbjct: 120 SAVNQAQPVSDGQQIYVPTQEEAEEGALPAAIQPADPGSETTDANGVVNINTADASAL-K 178 Query: 75 AMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +++G+G KAQAI++YREE+G F ++E++ QVPG+ S + + Sbjct: 179 SLSGIGDAKAQAILTYREEHGFFSSIEEIMQVPGIKESTFSAIKDKIAV 227 >UniRef50_C3NPA2 DNA uptake protein n=34 Tax=Vibrionaceae RepID=C3NPA2_VIBCJ Length = 103 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 41/92 (44%), Positives = 52/92 (56%), Gaps = 8/92 (8%) Query: 32 PTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYR 91 P + APAAQ + + V+IN ASAEELA + G+GLKKAQAIV YR Sbjct: 20 PLLANAEETAPAAQVEEGIVIT--------VNINTASAEELATLLKGIGLKKAQAIVDYR 71 Query: 92 EEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 E GPF ++DL V G+G + V N A + L Sbjct: 72 EANGPFTHIDDLTNVKGIGEATVRNNAARILL 103 >UniRef50_B2Q709 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q709_PROST Length = 122 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 4/123 (3%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 MK ++L + M + +++AK + A ++ + +E Sbjct: 4 MKFIKQSLGSAAVILTILMC----SQSALAKKAEADKPVAAVVSKKPKEEKPSENLKETN 59 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +V+IN ASAEELA+ ++G+G++KA+AIV YRE+YG F T+E++ +V G+G + +E+N Sbjct: 60 QVNINQASAEELAKKLHGIGIQKAKAIVEYREKYGAFNTLENILEVRGIGPAFLEKNRGK 119 Query: 121 LTL 123 L L Sbjct: 120 LAL 122 >UniRef50_Q1N619 DNA uptake protein and related DNA-binding protein n=1 Tax=Bermanella marisrubri RepID=Q1N619_9GAMM Length = 104 Score = 99.2 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 1/72 (1%) Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 ++ + ++ + IN ASAE+L + ++ +G KAQAI+ YRE GPFK +EDL+ V G+G+ Sbjct: 32 SEQAAQQIETIDINTASAEQLTQ-LDNIGPNKAQAIIDYRESNGPFKDLEDLQNVKGIGS 90 Query: 112 SLVERNLAVLTL 123 + + +N + + Sbjct: 91 TTIHKNRDRMLV 102 >UniRef50_C5BSJ6 DNA uptake protein ComEA n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BSJ6_TERTT Length = 119 Score = 99.2 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 33/81 (40%), Positives = 52/81 (64%) Query: 43 AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED 102 A + A S + V+IN A A+ +A + G+GLKKAQAIV+YRE+ G FK+++D Sbjct: 39 AGSADKAADQAKSTLVASSVNINKADAQTIADTLKGIGLKKAQAIVAYREKNGKFKSMDD 98 Query: 103 LKQVPGMGNSLVERNLAVLTL 123 L V G+G + +E+N +++ L Sbjct: 99 LLAVKGVGKATLEKNKSLIAL 119 >UniRef50_C7N574 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N574_SLAHD Length = 243 Score = 99.2 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAP--------------AAQSKAAVPAK 53 + +S A +A A + A+ A + P AA +A+ A Sbjct: 115 VCDAVSAASGFSDQAAQDAINQARVLADGEQVYVPTADDVESGAFAGPAAASEQASTGAG 174 Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 + +V+IN A A EL + ++G+G A+AIV RE GPF +VEDL++V G+G Sbjct: 175 EAASPSGKVNINTADASELQQ-LSGIGPATAEAIVKDREANGPFASVEDLQRVSGIGEKK 233 Query: 114 VERNLAVLTL 123 + + + Sbjct: 234 YAKIADDICV 243 >UniRef50_C5C480 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C480_BEUC1 Length = 290 Score = 99.2 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 9/121 (7%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD--------EEGTRV 62 L A + + LAA ++A+ + PA A + +G V Sbjct: 171 ALEAAGGALPEADLAALNLARVLVDGEQVYVPAPGEAPPAGAGGAPGAPAAEGGSDGGPV 230 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 ++N A L + G+G AQ IV +R G F VE+L +V G+G + +ER ++T Sbjct: 231 NLNTADLAAL-DTLPGIGPALAQRIVEWRTANGSFVDVEELTEVSGIGPATLERLRPLVT 289 Query: 123 L 123 + Sbjct: 290 V 290 >UniRef50_A5VJ84 Competence protein ComEA helix-hairpin-helix repeat protein n=8 Tax=Lactobacillus reuteri RepID=A5VJ84_LACRD Length = 210 Score = 99.2 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 2/115 (1%) Query: 9 LITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNAS 68 L + L ++ + P ET + + + AA +D ++++N A+ Sbjct: 98 LPSADLRQVNLAKQLTDQQMIYIPLQGETPVASSSTEPSAANNENGND-NSAKINLNTAT 156 Query: 69 AEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 E+L + + G+G KKA I+ YR+E+G FK++++LK++ G G V + L++ Sbjct: 157 KEQLCQ-ITGIGDKKADLILQYRQEHGQFKSIDELKEINGFGEKTVAKLKDHLSI 210 >UniRef50_B3WE30 ComE operon protein 1 n=9 Tax=Lactobacillus RepID=B3WE30_LACCB Length = 226 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS----KAAVPAKASDEEGTRV 62 L ++ ++ A+ S+ P A APA+ + A A+ V Sbjct: 105 GLTDKADISQVNLAMLAVDQESLQIPEKGGAVATAPASGTASIGGTAGQTNAAAGSRAVV 164 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 ++N A +L + ++G+G KKA I+SYR+ +G FK V +LK+V G+G+ E LT Sbjct: 165 NLNTADVSQL-QTISGIGPKKAADIISYRDSHGGFKDVAELKEVHGIGDKTFETLAPQLT 223 Query: 123 L 123 + Sbjct: 224 V 224 >UniRef50_Q7VNA6 Putative uncharacterized protein n=1 Tax=Haemophilus ducreyi RepID=Q7VNA6_HAEDU Length = 119 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 4 GIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVS 63 I L + C +S + LA + A AV K A + A + V+ Sbjct: 2 NILKKLAFILFICT-LSGNLLAKDTTAVRQAVVEKNSAVKIPTDTNSTTMAHKAQ--LVN 58 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 IN ASA E+ + G+G KKAQAIV YR + G F ++ + V G+G + +E+N + L Sbjct: 59 INTASAAEIQEKLTGIGEKKAQAIVDYRTKNGNFTHIDQITAVSGIGKATLEKNHDRIIL 118 >UniRef50_B8GUY5 DNA uptake protein and related DNA-binding protein-like protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUY5_THISH Length = 136 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 35/102 (34%), Positives = 52/102 (50%) Query: 22 SALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGL 81 + L A S P PA + V+IN A+ EELA A++GVG Sbjct: 35 APLLALSAIAPLHNTATMTRPAGGQDDSTNTGEGSPPQGAVNINTATPEELASAISGVGD 94 Query: 82 KKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A IV+YREE+GPF++V+ L +V G+G + + + LT+ Sbjct: 95 GVAARIVAYREEHGPFESVDHLTRVQGIGKATLAAHKDGLTV 136 >UniRef50_D0LC07 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LC07_GORB4 Length = 286 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 12 LSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEE 71 + + AG L +A VA + A P + A A S G+RV++N A+ ++ Sbjct: 177 ILVGYAGPDGRVLRSAVVAATGSGAPPANEPGT-TSGAPSAAPSGSSGSRVNLNTATEDQ 235 Query: 72 LARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 L A+ GVG A+AI+ +R G F +V+ L +V G+G + + + ++T+ Sbjct: 236 L-DALPGVGPVTARAIIDWRTRNGRFTSVDQLGEVDGIGPARLAKLRDLVTV 286 >UniRef50_A4AGG3 Competence protein ComEA helix-hairpin-helix region n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AGG3_9ACTN Length = 196 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 6/116 (5%) Query: 9 LITLSLACAGMSHSAL-AAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 +I A G + SA ++A+ + P +K+A + +RV++N A Sbjct: 86 VIDAIAAAGGFTESANHDELNLARLLTDGEQFSVPEVGAKSA----EAAVSDSRVNLNTA 141 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A L + +G A+ I+++RE GPF T++DL+ V G+G++ E ++ + Sbjct: 142 DAAAL-DTLPRIGPAMAKRILAWRESNGPFVTIDDLRNVAGIGDATFEGLRELIRV 196 >UniRef50_Q6M3A1 Secreted DNA uptake protein or related DNA-binding protein n=2 Tax=Corynebacterium RepID=Q6M3A1_CORGL Length = 217 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Query: 16 CAGMSHSALAAASVAKPTAVETKAEAPA-AQSKAAVPAKASDEEGTRVSINNASAEELAR 74 + + L A ++A+ T+ A + + A+ +S+N A+ +L Sbjct: 110 AGALPDADLTALNLAQLLVDGTQIHVLAIGEVQPISVDAAATSASGLISLNTATVADLV- 168 Query: 75 AMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 + GVG K AQAI+ +RE G F TVEDL QV G+G S E+ +++ Sbjct: 169 TLPGVGEKTAQAIIDFRESNGGFSTVEDLLQVKGIGPSKFEQISGLVS 216 >UniRef50_A3Y3S0 DNA uptake protein n=10 Tax=Vibrionales RepID=A3Y3S0_9VIBR Length = 99 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 35/83 (42%), Positives = 50/83 (60%) Query: 41 APAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTV 100 +PAA + + A+ D V+IN A+AEEL+ + GVG KKAQ IV YR++ G F T Sbjct: 17 SPAAYADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTTA 76 Query: 101 EDLKQVPGMGNSLVERNLAVLTL 123 +DL V G+G + V +N + L Sbjct: 77 DDLVSVKGIGEATVNKNRERIQL 99 >UniRef50_Q49Y31 Putative DNA uptake protein and related DNA-binding protein n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49Y31_STAS1 Length = 240 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 8/123 (6%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTA-------VETKAEAPAAQSKAAVPAKASDEEGT 60 LL L+ ++ + P + A S Sbjct: 119 LLKDADLSSVNLAEKLQDQKVIYIPKIGDKDQKDINMNHFALKNNHTEDSKKGNSTINSE 178 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +++IN+A+ +L +NG+G KA+AI+ YR+++GPF++VE LK V G+G +E+ + Sbjct: 179 QININDATESQLL-TINGIGPTKAKAIIEYRQQHGPFESVEQLKDVNGIGAKTLEKIGSK 237 Query: 121 LTL 123 LT+ Sbjct: 238 LTI 240 >UniRef50_A8RS55 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RS55_9CLOT Length = 293 Score = 99.2 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 26/134 (19%) Query: 15 ACAGMSHSALA-AASVAKPTAVETKAEAP----------------------AAQSKAAVP 51 A G S +A+ ++A+ K + P Sbjct: 161 AAGGFSEAAVPDYLNLAQVLEDGMKIQVPDREQAEEWKARGLTQSGISMGGGTAGVQTSG 220 Query: 52 AKASDEEGTR--VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 S E G++ V++N AS EEL + G+G +A I+ YR+E+G FK++ED+ V G+ Sbjct: 221 RTGSGEGGSKARVNLNTASREELM-TLRGIGASRADDIIHYRQEFGGFKSIEDIMNVSGI 279 Query: 110 GNSLVERNLAVLTL 123 N+ E+ +T+ Sbjct: 280 KNAAFEKIKDSITV 293 >UniRef50_B4SN39 Competence protein ComEA helix-hairpin-helix repeat protein n=3 Tax=Stenotrophomonas RepID=B4SN39_STRM5 Length = 108 Score = 98.8 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 42/70 (60%) Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 A + IN A A+ L + + VG KA+AIV +R +GPF VEDL QV G+G ++ Sbjct: 17 AGAHAAEPIDINRADAQALQQGLTMVGAAKAEAIVEHRRRHGPFHRVEDLTQVKGIGKAI 76 Query: 114 VERNLAVLTL 123 VERN +T+ Sbjct: 77 VERNRQRITV 86 >UniRef50_C4K4N8 Putative uncharacterized protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4N8_HAMD5 Length = 128 Score = 98.8 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 5/128 (3%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPA-----AQSKAAVPAKAS 55 MK K L + L L + + AA S + P+ K K S Sbjct: 1 MKKTKKLLPVFLLLGTISSAWTVFAAPSEQNNNKYNSSTINPSFRGGVEGKKIKENTKDS 60 Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 +E R+SIN ASAEELA+ +NG+G KKA+AIV YRE+YG F +E+L++V G+G + + Sbjct: 61 NELDERISINTASAEELAKFLNGIGKKKAEAIVQYREKYGEFSEIEELEEVSGIGPAFMR 120 Query: 116 RNLAVLTL 123 +N + L L Sbjct: 121 KNSSKLKL 128 >UniRef50_A6BGR9 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BGR9_9FIRM Length = 255 Score = 98.8 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 21/136 (15%) Query: 8 LLITLSLACAGMSHSALAAASVAKPT------AVETKAEAPAAQSKAAVPAKASDEE--- 58 L + +A +A A + A+ V TK EA A + +D E Sbjct: 121 LYEAIQMAGGFTDEAAGEALNQAEKIEDGSRIYVPTKEEAKAGTENNGTFVQNADNEKTD 180 Query: 59 -----------GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVP 107 +V IN A +EL ++G+G KA AI+ YR+E+G F+ +EDL +V Sbjct: 181 ATKSTDAGSTADGKVDINTAGKDELM-TLSGIGEAKADAIIRYRDEHGKFQKIEDLMEVE 239 Query: 108 GMGNSLVERNLAVLTL 123 G+ + + ++ + + Sbjct: 240 GIKDGVFQKVKDQIKI 255 >UniRef50_C9A015 Late competence protein ComEA n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A015_ENTGA Length = 198 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Query: 9 LITLSLACAGMSHSALAAA-SVAKPTAVETKAEAPAAQSKAAVPAKASDE--EGTRVSIN 65 L L G++ + A+ + + P ++ ++ +N Sbjct: 81 LYELIQLAGGVTDEGNEEVMNFAQELSDQQLVIVPHLDDPVVYADNGAEGTLAQNQIDLN 140 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A + +L + + G+G KKA+AI++YREE G FKTVE++K+V G+G E ++ + Sbjct: 141 TADSSQL-QELPGIGAKKAEAIIAYREEKGFFKTVEEVKEVSGIGPKTYEALEGLIKV 197 >UniRef50_Q042S8 DNA uptake protein related DNA-binding protein n=12 Tax=Lactobacillus RepID=Q042S8_LACGA Length = 246 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 16/136 (11%) Query: 1 MKHGIKALLITLSLACAGMSHSALA-AASVAKPTAVETKAEAPAAQSKAAVPA------- 52 +K+G + L L C G++ A A + A + + P K P Sbjct: 114 LKNGAR--LNDLLKICGGLTDKAETRAINRAALLKDQDQIYVPHIGEKVENPPGNGTSNN 171 Query: 53 -----KASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVP 107 +S +V +N A+ ++L + +NGVG KKA+ I++YR++ G FK +EDL +V Sbjct: 172 NSAASDSSSSNSEQVHLNTATVQDL-QKLNGVGQKKAEQIIAYRDQNGGFKQIEDLTKVT 230 Query: 108 GMGNSLVERNLAVLTL 123 G+G E+ L L Sbjct: 231 GIGEKTFEKLKDQLAL 246 >UniRef50_A3CLU6 DNA uptake protein, putative n=38 Tax=Streptococcus RepID=A3CLU6_STRSV Length = 226 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 61/103 (59%), Gaps = 3/103 (2%) Query: 21 HSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVG 80 + + A + + A T+ Q+ A+ A AS + +V++N A+ EL + ++G+G Sbjct: 126 EAVIYVAKIGEEGADVTQGGQ--HQAGASDSASASGGKSDKVNLNTATEAEL-QTISGIG 182 Query: 81 LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 K+A I++YRE G FK+V+DLK+V G+G+ +E+ +T+ Sbjct: 183 QKRASDIIAYRESNGRFKSVDDLKKVSGIGDKTLEKLKEYVTV 225 >UniRef50_B8FUQ3 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FUQ3_DESHD Length = 216 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 38 KAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPF 97 +++ A + A A ++IN A A EL + + G+G A+ I+ YR E+G F Sbjct: 130 ESQGQTATVTPNLGAAAPSRSSNLININTADAAELDK-LPGIGPALAERIIQYRMEHGLF 188 Query: 98 KTVEDLKQVPGMGNSLVERNLAVLTL 123 EDLK+V G+GN + ++T+ Sbjct: 189 LQPEDLKKVSGIGNKTYAKMADMVTV 214 >UniRef50_A1S4Z4 DNA uptake protein-related DNA-binding protein n=1 Tax=Shewanella amazonensis SB2B RepID=A1S4Z4_SHEAM Length = 103 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 15/115 (13%) Query: 9 LITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNAS 68 L+ L A +H L AA A ++ A A+ + ++++IN A+ Sbjct: 4 LLVTLLLGAAFTHFPLLAA--------------EAPKTDTAPNAEVQMPQTSKININTAT 49 Query: 69 AEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 EL + + G+G KA+AIV YR +YG F +VEDL +V G+G +++ N +L+L Sbjct: 50 ESEL-QLLKGIGQAKAKAIVEYRNQYGRFASVEDLTKVAGVGQKVLDDNRDILSL 103 >UniRef50_Q4FVH1 Putative competence DNA binding protein ComEA n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FVH1_PSYA2 Length = 115 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 9/113 (7%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAE 70 +++ +S++ A + +A +Q++A + ++IN A+ Sbjct: 10 CVAMMVIMLSNANAAPCFDSAQSAYRYLLAQETSQTQARTQSI--------ININRATEG 61 Query: 71 ELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 EL ++G+G KAQAI+ YRE +G FKTV++L +V G+G VE+N LT+ Sbjct: 62 ELT-LLHGIGSSKAQAIILYREMFGRFKTVDELTKVKGIGAKTVEKNRGRLTV 113 >UniRef50_D0SCS9 Putative uncharacterized protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SCS9_ACIJO Length = 132 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 38/95 (40%), Positives = 62/95 (65%), Gaps = 2/95 (2%) Query: 30 AKPTAVETKAEAPAAQSKAAVPAKAS-DEEGTRVSINNASAEELARAMNGVGLKKAQAIV 88 A+ A + + +AP +A P +A ++S+N AS ++L + + GVGLKKAQAIV Sbjct: 39 AEQQAWDDRIQAPKRVKRAVSPVQAQPMLSTNKISLNQASVDQLQQ-LQGVGLKKAQAIV 97 Query: 89 SYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +YR++ GPFKT+++L+QV G+G ++ +N L L Sbjct: 98 AYRQKQGPFKTIDELQQVRGIGPAIFAKNKTRLGL 132 >UniRef50_C7XTN3 Competence protein n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XTN3_9LACO Length = 210 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 6/118 (5%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA-----AVPAKASDEEGTRVSIN 65 ++ A S + L ++AK + + P + + + T+V++N Sbjct: 94 AIAAAGGSTSQADLNQVNLAKELLDQQVIQIPRLGEQVLPLGDTLGNANNSSSSTKVNLN 153 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ EEL + ++GVG KKA I+ YR ++G FKT +DLK + G G V + L + Sbjct: 154 TATKEELTK-IDGVGDKKADKILEYRNQHGSFKTPDDLKNITGFGEKTVAKLKDQLAV 210 >UniRef50_B0NE87 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NE87_EUBSP Length = 202 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 56/114 (49%), Gaps = 6/114 (5%) Query: 15 ACAGMSH-SALAAASVAKPTAVETKAEAPAAQSK----AAVPAKASDEEGTRVSINNASA 69 A G+ +A + + A+ + P+ + + + ++ ++++N A+ Sbjct: 90 AAGGLKEGAAAESLNQAQEAKDGQQIYVPSIEESLKEGVSGEGEPAEASDGKINLNTAAK 149 Query: 70 EELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 E+L + G+G KA AI+ YREE G F+++E+L +V G+ + + + + Sbjct: 150 EQLM-TLTGIGETKAAAIIRYREENGGFQSIEELMEVEGIKEGVFNKIKDQIKI 202 >UniRef50_A3QFV7 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Shewanella loihica PV-4 RepID=A3QFV7_SHELP Length = 99 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 1/80 (1%) Query: 44 AQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 A + ++PA + ++V+IN ASA+EL + + G+G KA AIV YR+ +G F ++E+L Sbjct: 21 AAEQVSIPADTAQASLSQVNINTASAQELTQ-LKGIGEAKASAIVEYRDAHGKFNSIEEL 79 Query: 104 KQVPGMGNSLVERNLAVLTL 123 QV G+G ++E+N A+L L Sbjct: 80 TQVKGIGPKVIEQNKAILAL 99 >UniRef50_C6IZI4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZI4_9BACL Length = 170 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 17 AGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAM 76 G S + A A A + + A + ++SIN A EL + + Sbjct: 65 GGGSGETVTNADAAGQNAGPSAGAESNSGVAAFKEEAGKSTDTGKISINRAGLAEL-QEI 123 Query: 77 NGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G+G KKA+AI+ YR +GPF ++E L +V G+G+ ++E+ + L Sbjct: 124 PGIGEKKAKAILDYRNAHGPFTSIEALTEVKGIGDKMLEKMKPYIGL 170 >UniRef50_Q2BK91 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BK91_9GAMM Length = 100 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 31/62 (50%), Positives = 48/62 (77%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 + IN AS E+L+ + G+G KA+AIV++RE++GPFKTV++L QV G+G + V +NL V+ Sbjct: 26 LDINTASVEQLSTNLKGIGHSKAEAIVAHREQHGPFKTVDELTQVKGIGKATVSKNLDVM 85 Query: 122 TL 123 T+ Sbjct: 86 TV 87 >UniRef50_C2E267 Competence protein ComEA n=4 Tax=Lactobacillus jensenii RepID=C2E267_9LACO Length = 216 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 2/96 (2%) Query: 29 VAKPTAVETKAEAPAAQSKAAVPAKA-SDEEGTRVSINNASAEELARAMNGVGLKKAQAI 87 + K E + A+ P+ S+ G ++ +N+A+ +L + +NGVG KKA+ I Sbjct: 122 DQDKVYIPVKGENSPLDTTASQPSSTTSNNGGEKIHLNSATIADL-QKLNGVGQKKAEQI 180 Query: 88 VSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 ++YRE+ GPFK+V+DL +V G+G + L L Sbjct: 181 IAYREQNGPFKSVDDLTKVSGIGEKTLAGFKDQLEL 216 >UniRef50_C0WQ86 Competence protein ComEA n=3 Tax=Lactobacillus RepID=C0WQ86_LACBU Length = 247 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 2/104 (1%) Query: 21 HSALAAASVAKPTAVETKAEAP-AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGV 79 + +L A P+A + AA S A + +S E ++++N A +L + +NG+ Sbjct: 145 NRSLGATPSQSPSAETSSTNPQTAATSNAESSSGSSTEGTEKINLNTADKSKL-QELNGI 203 Query: 80 GLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G KKA I++YR+ +G FK++E+LK VPG G+ + + + + Sbjct: 204 GDKKADQIIAYRQAHGQFKSIEELKDVPGFGDKTFDNLKSTICV 247 >UniRef50_C5S429 DNA uptake protein n=2 Tax=Actinobacillus minor RepID=C5S429_9PAST Length = 132 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 8/131 (6%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAAS---VAKPTAVETKAEAPAAQSKAAVPAKASDE 57 MK + L+ + P ++ A + A+VPA + + Sbjct: 1 MKKMNVLAVTLGLLSGTAFAQQPQPVEQPSQTQNPAVMQQSTIQQATNTIASVPANTTQQ 60 Query: 58 -----EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNS 112 V+IN ASA E+ + G+G KKAQAIV YR + G F ++E LK+V G+G++ Sbjct: 61 IQQVANPNLVNINVASAAEIQDKLVGIGAKKAQAIVDYRTKNGAFSSIEQLKEVSGIGSA 120 Query: 113 LVERNLAVLTL 123 +++N + L Sbjct: 121 TLDKNRERIIL 131 >UniRef50_Q1J5X8 COME operon protein 1 n=11 Tax=Streptococcus pyogenes RepID=Q1J5X8_STRPF Length = 220 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 9/119 (7%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAV--------PAKASDEEGTRV 62 + LA S + A + A+ E P + +V + + ++ ++V Sbjct: 100 VIELAGGLTSEADKHAINFAEKLTDEQVVYVPKQGEEISVLPRSLVSGKKETASKDQSKV 159 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 IN AS EEL + + G+G K+AQ I+ R++ G FK +EDL+QV G+G +E+ + Sbjct: 160 HINKASLEEL-QHIPGIGAKRAQDIIDMRDKLGGFKALEDLRQVSGIGEKTLEKLKDDI 217 >UniRef50_B8KIU0 Competence protein ComEA helix-hairpin-helix repeat region n=6 Tax=Gammaproteobacteria RepID=B8KIU0_9GAMM Length = 141 Score = 98.4 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 10/110 (9%) Query: 13 SLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEEL 72 +L G S A +A+ + +T + + A V+IN ASA EL Sbjct: 40 ALFALGTQLSLQTAPVLAQNGSADTVDKVALVNEEIAAT----------VNINTASAGEL 89 Query: 73 ARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 A +NG+G KAQAIV YRE++GPF++V++L +V G+G S VERN +VL+ Sbjct: 90 ASRLNGIGGSKAQAIVRYREQFGPFESVDELSEVAGIGESTVERNRSVLS 139 >UniRef50_A1TBZ2 Competence protein ComEA helix-hairpin-helix repeat protein n=5 Tax=Actinomycetales RepID=A1TBZ2_MYCVP Length = 269 Score = 98.0 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 2/98 (2%) Query: 26 AASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQ 85 A +PT + + + AA+ AA P + G V +N A+AE+L + GVG A Sbjct: 174 GAPAGQPTEMGSSIVSQAAEPGAASPQTPAASTG-LVDLNTATAEQL-DTLPGVGPVTAA 231 Query: 86 AIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 AI+++R+ G F +VE L V G+G + +++ A++ + Sbjct: 232 AILAWRDANGRFSSVEQLGDVDGIGPARLDKLRALVRV 269 >UniRef50_UPI0001976DE0 hypothetical protein BbifN4_05079 n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI0001976DE0 Length = 209 Score = 98.0 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 6/108 (5%) Query: 21 HSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEG-----TRVSINNASAEELARA 75 +S A + ++ VE+ A + AAQ+ + + + TR+ +N A+AE+L + Sbjct: 103 NSGGAGDAESQGDGVESSAGSQAAQNGRSSQQGSDGSDDGATADTRIDLNTATAEQL-DS 161 Query: 76 MNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + GVG AQ I+ +R G F +V+ L V G+G + + + + Sbjct: 162 IPGVGPVTAQRILDHRRSIGRFTSVDQLLDVSGIGAKTLTKIRPWVRV 209 >UniRef50_C1YNH2 DNA uptake protein n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YNH2_NOCDA Length = 316 Score = 98.0 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 2/110 (1%) Query: 15 ACAGMSHSALAAASVAKPTAVETKAEAPAA-QSKAAVPAKASDEEGTRVSINNASAEELA 73 A + + L ++A+P + + A V G V IN A L Sbjct: 207 AGGALPDADLDLLNLARPLVDGEQVLVGVPVPAGAGVTGSGPQGAGGLVDINRADRA-LL 265 Query: 74 RAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + G+G A IVSYREE+GPF++V+DL V +G+ + +T+ Sbjct: 266 ETLPGIGAVIADNIVSYREEHGPFRSVDDLLNVDRIGDKTLADLQPHVTV 315 >UniRef50_C2C1Y0 ComEA family DNA-binding competence protein n=1 Tax=Listeria grayi DSM 20601 RepID=C2C1Y0_LISGR Length = 198 Score = 98.0 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 2/114 (1%) Query: 11 TLSLACAGMSHSA-LAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASA 69 L G++ +A + ++A E A + V+IN AS Sbjct: 85 DLVHLAGGVNQTADMKQINLAAKLKDEESIYIAKIGEIAEQTDTDKQRKDDTVNINTASL 144 Query: 70 EELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +EL + + GVG KAQAI+ YRE G F+ VEDLK + G G +ER + + Sbjct: 145 QEL-QGIPGVGPAKAQAILEYRESTGLFQKVEDLKNISGFGEKTIERLKNFIAV 197 >UniRef50_D0SS69 ComE1 n=1 Tax=Acinetobacter lwoffii SH145 RepID=D0SS69_ACILW Length = 140 Score = 98.0 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 12/128 (9%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD---------- 56 +LL++ L + A + + + +A + AA + S+ Sbjct: 14 SLLLSCWLGFISIGTVHATATDYMEWKTQQQQHDARLKKKAAATASSESNHYLAKPALSA 73 Query: 57 -EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 ++S+NNA+ E+L + +NG+G KKA+AI+ +R++ G FK++E+++ V G+G +L Sbjct: 74 SSAANKISLNNATVEQLQQ-LNGIGQKKAEAIIEHRQKNGKFKSIEEIQLVKGIGPALFA 132 Query: 116 RNLAVLTL 123 +N A L L Sbjct: 133 KNKAKLAL 140 >UniRef50_Q4JWS7 Putative uncharacterized protein n=2 Tax=Corynebacterium jeikeium RepID=Q4JWS7_CORJK Length = 294 Score = 98.0 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 + +V++N A A +L ++G+G A+AI+ +RE GPF +VE L V G+G + E Sbjct: 228 NGADAKVNLNTADATQL-ETISGIGPATAEAIIDWRESNGPFTSVEQLLDVRGIGPAKFE 286 Query: 116 RNLAVLTL 123 +T+ Sbjct: 287 AMRDAVTI 294 >UniRef50_Q47IV8 Competence protein ComEA helix-hairpin-helix region n=4 Tax=Betaproteobacteria RepID=Q47IV8_DECAR Length = 265 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 1/63 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +++IN A+ E+L + G+G KA+AIV YR++ GPFK+V++L+ VPG+G + ++ Sbjct: 44 QININTATPEQL-DGLKGIGPTKAKAIVDYRKKNGPFKSVDELQNVPGIGPATLKDLRPD 102 Query: 121 LTL 123 + + Sbjct: 103 VVV 105 >UniRef50_C1DBR5 Probable DNA transport competence protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBR5_LARHH Length = 161 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 1/57 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 V++N AS EL ++ +G KAQAI+ +R+++GPFK+V+DL+ VPG+G+ + Sbjct: 23 VNVNTASRAEL-ESLPEIGPVKAQAILDWRQQHGPFKSVDDLRNVPGIGDKTLATIR 78 >UniRef50_Q5HNV7 ComE operon protein 1, putative n=6 Tax=Staphylococcus RepID=Q5HNV7_STAEQ Length = 224 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Query: 4 GIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVS 63 +L L+ +S + + P E + + QS + ++ Sbjct: 107 NKAEVLKDADLSQLNLSEKLVDQKLIYVPKKGENSMKINSQQSTLNSSDVKINTNQP-LN 165 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +N+A+ E+L + + G+G KA+ I++YRE+ F +++DL ++ G G E+ T+ Sbjct: 166 LNSATEEQL-KNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLKEHFTI 224 >UniRef50_D1BEI9 DNA uptake protein n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BEI9_SANKS Length = 301 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 12/126 (9%) Query: 9 LITLSLACAGMSHSALAAA-SVAKPTAVETKAEAPAAQSKAAVPAKASDEE--------- 58 ++ A G++ A +A+ ++A+P + PA + V A+A+ Sbjct: 175 VVDAIDAAGGLTPDADSASVNLARPAVDGEQVYVPAPGEEVPVAAEAAAGAASQHGGAPA 234 Query: 59 -GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 G V +N A A+EL + + GVG AQ I+ +R +G F +V+ L+ V G+G ++ER Sbjct: 235 VGGLVDLNRAGADEL-QTLPGVGPALAQRILDWRTTHGAFGSVDQLQDVSGIGPVVMERL 293 Query: 118 LAVLTL 123 ++++ Sbjct: 294 RELVSV 299 >UniRef50_Q9RIA7 ComEA protein (Fragment) n=4 Tax=Neisseria RepID=Q9RIA7_NEIME Length = 170 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN AS +EL A+ G+G KA+AI YR + G FK+V+DL +V G+G +++ + Sbjct: 92 VNINAASQQEL-EALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQA 150 Query: 122 TL 123 ++ Sbjct: 151 SV 152 >UniRef50_B0MCG3 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MCG3_9FIRM Length = 200 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 9/122 (7%) Query: 9 LITLSLACAGMSHSALAA-------ASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR 61 +++ G + A AA + V +K EA + + P S + R Sbjct: 81 IVSAIALAGGFTKDASAAGVNQAERIKDGQQIYVPSKKEA-GKKEDTSSPTGGSGTQDKR 139 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V++N+AS EEL + G+G KA I+SYREE G F+ ED+ ++ G+ + + ++ Sbjct: 140 VNLNSASREELM-TLTGIGEAKASDIISYREENGGFEKPEDIMKIRGIKQGIYRKIKDMI 198 Query: 122 TL 123 T+ Sbjct: 199 TV 200 >UniRef50_C7MDA6 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MDA6_BRAFD Length = 279 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Query: 14 LACAGMSHSALAAASVAKPTAVETKAEAP----AAQSKAAVPAKASDEEGTRVSINNASA 69 LA ++ + + P E A A + G + +N A A Sbjct: 167 LAAVNLARPLVDGEQIHVPLPGEQPPPAEDGPAAPPGGGEGSGPPGTDAGGAIDLNTAGA 226 Query: 70 EELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 EL + GVG AQ I+ +RE+ G F +V+ L +V G+G + +E+ A T+ Sbjct: 227 AELEE-LPGVGPAIAQRILEHREKNGAFTSVDGLLEVSGIGPATLEKIRAEATV 279 >UniRef50_B7ASY0 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7ASY0_9BACE Length = 213 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 6/111 (5%) Query: 16 CAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE---EGTRVSINNASAEEL 72 M+ + ++ P E AE A S+ + D+ + T+++IN AS E+L Sbjct: 105 SVSMAKTVTDGQTLYVPHLDE--AEDDVAGSRLSGSVTGDDDIYGQKTKININTASVEQL 162 Query: 73 ARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + G+G +A+ IV YR G FK ED+ +V G+ + + + + Sbjct: 163 M-TLKGIGESRARDIVDYRTRNGSFKKTEDVMKVSGIKEAAYSKIKDDICV 212 >UniRef50_C6JE10 DNA uptake protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JE10_9FIRM Length = 274 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 43 AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED 102 +A + A ++ R++IN A +L + G+G +AQAI++YREE GPF +ED Sbjct: 194 SAGTGQNTGMNAQVQQDNRININTADEAQLT-TLTGIGATRAQAIIAYREENGPFAAIED 252 Query: 103 LKQVPGMGNSLVERNLAVLTL 123 + V G+ + + + Sbjct: 253 IMNVQGIKEGTFAKIKDEIVV 273 >UniRef50_A8VU71 HAD superfamily (Subfamily IIIA) phosphatase, TIGR01668 n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VU71_9BACI Length = 226 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 14/134 (10%) Query: 1 MKHGIKALLITLSLACAGMSHSA-LAAASVAKPTAVETKAEAPAAQSKAAVPAKAS---- 55 M+ + ++ + G + +A ++A + E P + AV Sbjct: 90 MQSDDR--VLDAVMEAGGFTDTAAHDGINLASRLSDEMVVYVPYEMAGEAVGVSPENMME 147 Query: 56 ------DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 +E+ V +N + L + G+G KA AI+ YR+E+GPF E+L QVPG+ Sbjct: 148 TAWATMEEDDGLVCLNGSDHAAL-ETLPGIGPAKAAAIIQYRDEHGPFTNEEELVQVPGI 206 Query: 110 GNSLVERNLAVLTL 123 G+ E +++ + Sbjct: 207 GDKTFETLRSLIKV 220 >UniRef50_C4DRK5 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DRK5_9ACTO Length = 225 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%) Query: 31 KPTAVETKAE-APAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVS 89 P E AE P+ + + G V++N A+ +ELA + G+G A +IV Sbjct: 133 NPDDPEAPAEPDPSEEPPTGETPDDPNAPGEPVNLNKATEDELA-TLPGIGPVTAASIVE 191 Query: 90 YREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 YRE+ G F +V+ L +V G+G + +++ +T+ Sbjct: 192 YREQSGGFDSVDQLTEVDGIGPATLDKLADKVTV 225 >UniRef50_A8H5Z5 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Shewanella RepID=A8H5Z5_SHEPA Length = 105 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 6/93 (6%) Query: 32 PTAVETK-AEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSY 90 P A ET+ E PA+QS+A K S + V IN+A+A EL+ ++NG+G KA AIV Y Sbjct: 18 PAAAETQVTEKPASQSQA----KQSVAKSELVKINSATAAELS-SLNGIGEAKATAIVEY 72 Query: 91 REEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 R+ +G F +VE+L V G+G LV++N + L+L Sbjct: 73 RKAHGNFSSVEELTNVKGIGEKLVDKNRSQLSL 105 >UniRef50_C5CCD9 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=2 Tax=Micrococcus luteus NCTC 2665 RepID=C5CCD9_MICLC Length = 285 Score = 97.3 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 3/107 (2%) Query: 16 CAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARA 75 +H+ A A E P A G V +N A A +L + Sbjct: 181 LVPSAHTPQDALDRVAGAAQEQPT--PTTGRAGAGDEPGGAGPGGTVDLNTADAADL-QT 237 Query: 76 MNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 + GVG A+ I+++RE GPF ++DL V G+G + ++R +++ Sbjct: 238 LPGVGPATAEKIIAHRETVGPFSGLQDLDAVSGIGPATLDRLRDLVS 284 >UniRef50_A8U897 Competence protein comEA n=1 Tax=Carnobacterium sp. AT7 RepID=A8U897_9LACT Length = 237 Score = 97.3 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 + T+V+IN A A EL + ++G+G KKA+ IV YR+E G F+T+EDLK V G+G Sbjct: 164 ESEGNTNATKVNINLADAIELQQ-LSGIGEKKAEQIVLYRQENGSFQTIEDLKNVSGIGE 222 Query: 112 SLVERNLAVLTL 123 E A +T+ Sbjct: 223 KTFEALKASVTV 234 >UniRef50_D0WN87 Competence protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN87_9ACTO Length = 380 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V++N A AEEL + + GVG A+AI+++REE G F++V+DL V G+G + + + + Sbjct: 320 VNVNTAGAEEL-QTLPGVGPATAKAIIAWREENGRFRSVDDLLDVSGIGKATLAKFRDRV 378 Query: 122 TL 123 ++ Sbjct: 379 SV 380 >UniRef50_C6LGL8 Competence protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LGL8_9FIRM Length = 281 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 3/104 (2%) Query: 20 SHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGV 79 + AA +A P V+ A + +++ + T+V+IN A +L + G+ Sbjct: 180 TQEEAAAQGIAAPEPVQNAAGGQ--EQAPGQQMESAAGQETKVNINTADIAQLC-TLTGI 236 Query: 80 GLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G +A+ I++YRE G F++ E++ V G+ + ++ + + Sbjct: 237 GEARARDIIAYREANGGFQSAEEIMNVSGIKEATFQKIKDEIAV 280 >UniRef50_D1BMN5 Competence protein ComEA helix-hairpin-helix repeat protein n=3 Tax=Veillonella RepID=D1BMN5_VEIPT Length = 189 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 G +++IN A+A+EL ++ G+G A+ I YR + GPF ++E +K V G+G+ + ++ Sbjct: 126 GNKININTATAKEL-DSLPGIGPAMAKKIEEYRSQKGPFTSIEGIKGVKGIGDGVFKKIK 184 Query: 119 AVLTL 123 +T+ Sbjct: 185 DKITI 189 >UniRef50_C4LC84 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LC84_TOLAT Length = 130 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 1/105 (0%) Query: 19 MSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNG 78 M+ A+ A ++ + A A Q + E T + +N A+AE+L + G Sbjct: 1 MTKKAVFALLLSGLPFIANMALAVENQITEFSDSAVVASEQTPIDLNTATAEQLM-TLKG 59 Query: 79 VGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 VG KKAQAI++YRE++ F+ +E+L +V G+G L+ NL LT+ Sbjct: 60 VGKKKAQAIITYREQHNGFQRIEELDEVKGIGPKLLSINLVRLTV 104 >UniRef50_A4XAF1 Competence protein ComEA helix-hairpin-helix repeat protein n=3 Tax=Micromonosporaceae RepID=A4XAF1_SALTO Length = 280 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 1/63 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +V++N AS +L + GVG AQ I+ +R+++G F++V DL+QV G+G++ E+ + Sbjct: 219 KVNLNTASLAQL-DTLPGVGPVLAQRILDHRQQHGGFRSVSDLRQVGGIGDTRYEQLKDL 277 Query: 121 LTL 123 +T+ Sbjct: 278 VTV 280 >UniRef50_D0X9N0 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0X9N0_VIBHA Length = 99 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 2/83 (2%) Query: 43 AAQSKAAVPAKASDEEGT--RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTV 100 A+ +V KA+ EG V++N ASAEE+A +NG+G KKAQ IV YR E+GPFKT Sbjct: 17 WAEEGKSVTTKAAKYEGIEITVNVNTASAEEIATLLNGIGTKKAQDIVEYRNEHGPFKTA 76 Query: 101 EDLKQVPGMGNSLVERNLAVLTL 123 DL +V G+G + V++N + L Sbjct: 77 ADLSKVKGIGEATVKKNQDRILL 99 >UniRef50_A0Q1S7 Competence protein n=3 Tax=Clostridium RepID=A0Q1S7_CLONN Length = 224 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 40 EAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKT 99 E+ Q+ + + ++++IN A+ EEL + + GVG AQ I+ YRE+ G F + Sbjct: 141 ESNVKQNSVHNVTRGTSNNESKININTATKEELMK-LPGVGEVTAQNIIDYREKSGGFNS 199 Query: 100 VEDLKQVPGMGNSLVERNLAVLTL 123 V+D+ +V +G + + + + Sbjct: 200 VDDITKVNRIGTKTLAKFKDKIEV 223 >UniRef50_C2L1I3 Possible helix-hairpin-helix repeat-containing competence protein ComEA n=1 Tax=Oribacterium sinus F0268 RepID=C2L1I3_9FIRM Length = 218 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 1/99 (1%) Query: 25 AAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKA 84 A + + E A + + + E +++IN A+ +EL ++ G+G A Sbjct: 121 AESKAGSKAEIGVDGEKKEAGIEDSQEKIQQNREEKKININTATEQEL-ESLKGIGPATA 179 Query: 85 QAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + I+ YREEYG F ++E++K V +G+ + E+ A + + Sbjct: 180 KNIIRYREEYGGFSSIEEIKNVKRIGDKIFEKIKADICV 218 >UniRef50_B7IEN5 Putative uncharacterized protein n=1 Tax=Thermosipho africanus TCF52B RepID=B7IEN5_THEAB Length = 191 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 43 AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED 102 SK + E +++IN A ++L + G+G KA+ I+ YRE+ G F ++ + Sbjct: 112 VTVSKTNEVQINMNNELKKININKADEKQL-EKLPGIGPTKAKRIIEYREKNGKFNSLNE 170 Query: 103 LKQVPGMGNSLVERNLAVL 121 L V G+G +E+ L Sbjct: 171 LLNVNGIGPKTLEKIKNYL 189 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 D E + +N A E+L ++ G+G KA+AI+SYR+ +G F +++DL V G+G S +E Sbjct: 48 DYESQIIDLNKADLEQLM-SLPGIGTVKAKAIISYRQAHGNFNSIDDLINVTGIGPSTLE 106 Query: 116 RNLAVLTL 123 + +T+ Sbjct: 107 KIRDYVTV 114 >UniRef50_C4GM10 Putative uncharacterized protein n=2 Tax=Kingella oralis ATCC 51147 RepID=C4GM10_9NEIS Length = 132 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V +N A+ E+L+ + G+ KKA AIV YR++ G FK+V+DLK VPG+G V++ + L Sbjct: 42 VDLNTATVEQLS-TLKGIKAKKATAIVEYRQKNGAFKSVDDLKNVPGIGQKTVDKLRSEL 100 Query: 122 TL 123 T+ Sbjct: 101 TV 102 >UniRef50_C5RD12 Late competence protein required for DNA binding and uptake n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RD12_WEIPA Length = 226 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 41 APAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTV 100 PA + + A + ++++N A + L + + G+G K+AQ I+ RE G FKT+ Sbjct: 145 NPAHKEQHIGQASDQNNSNDKINLNTADSATL-QNLPGIGEKRAQDIIKQRETMGGFKTI 203 Query: 101 EDLKQVPGMGNSLVERNLAVLTL 123 DL+QV G+G + ++T+ Sbjct: 204 SDLQQVNGIGEKTFAKLEPLVTV 226 >UniRef50_A0YFD4 Competence protein ComEA helix-hairpin-helix region n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YFD4_9GAMM Length = 91 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 32/65 (49%), Positives = 47/65 (72%) Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 + V+IN A A L+ ++ GVG KAQAIV+YR+ YGPFK+VE+L V G+G+SL+ +N Sbjct: 26 SSPVNINTADAATLSASLKGVGSSKAQAIVTYRDNYGPFKSVEELTAVRGIGDSLLAKNK 85 Query: 119 AVLTL 123 ++ L Sbjct: 86 DIILL 90 >UniRef50_Q83MW2 ComE operon protein 1-like protein n=2 Tax=Tropheryma whipplei RepID=Q83MW2_TROWT Length = 193 Score = 96.5 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 2/112 (1%) Query: 13 SLACAGMSHSALAAASVAKPTAVETKAE-APAAQSKAAVPAKASDEEGTRVSINNASAEE 71 SL ++A+ AA KP + A + + D E + V+IN A A+ Sbjct: 83 SLEAGSRVNNAIIAAGGFKPLSDTNSVNLAELLRDGQKIVVLPKDSESSPVNINTADAQR 142 Query: 72 LARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 L +++ G+G A+ I+ +R ++GPFK +EDLK++ G+GN L++ + L Sbjct: 143 L-QSIKGIGKATAKRIIDWRNKHGPFKRLEDLKKISGIGNKLIKSIKDKVIL 193 >UniRef50_D0IBX9 Putative DNA uptake protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IBX9_VIBHO Length = 94 Score = 96.5 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 44/62 (70%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN A A+EL + ++G+G KAQAI+ YR G F++V+DLK V G+G S+V++N + Sbjct: 33 VNINTAEADELDKYLDGIGKAKAQAIIDYRNANGAFESVDDLKGVKGIGTSIVDKNRDRI 92 Query: 122 TL 123 L Sbjct: 93 VL 94 >UniRef50_Q3BQY6 ComEA-related DNA uptake protein n=16 Tax=Xanthomonadaceae RepID=Q3BQY6_XANC5 Length = 135 Score = 96.5 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 42/64 (65%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 +V IN ASAEEL + + VG KA+AIV +R+ GPFK+ E+L V G+G VERN Sbjct: 50 DKVDINTASAEELDKVLMNVGRSKAEAIVEHRQANGPFKSAEELALVKGIGLKTVERNRD 109 Query: 120 VLTL 123 ++ + Sbjct: 110 LIEV 113 >UniRef50_A9LZV6 DNA transport competence protein n=59 Tax=Proteobacteria RepID=A9LZV6_NEIM0 Length = 145 Score = 96.5 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN AS +EL A+ G+G KA+AI YR + G FK+V+DL +V G+G +++ + Sbjct: 67 VNINAASQQEL-EALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQA 125 Query: 122 TL 123 ++ Sbjct: 126 SV 127 >UniRef50_C4Z9D4 Unspecific high-affinity DNA-binding protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z9D4_EUBR3 Length = 243 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 10/126 (7%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE--------- 57 +L T + ++ + PT E K++ + + + Sbjct: 118 GMLDTADKSFWNLASELYDGQMLYFPTVEELKSDHIPEGTYTTGIDGSLMKGGAEEHIGV 177 Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 + +++IN A+ E+L A++G+G KA++IV R + G F ++ED+ +V G+G ++ + Sbjct: 178 KDGKLNINTATVEQLM-ALSGIGESKAKSIVEDRAKNGLFSSIEDITRVSGIGETMFNKI 236 Query: 118 LAVLTL 123 +T+ Sbjct: 237 KDDITV 242 >UniRef50_C0BAZ1 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BAZ1_9FIRM Length = 200 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 61/119 (51%), Gaps = 11/119 (9%) Query: 15 ACAGMSHSA-------LAAASVAKPTAVETKAEAPAAQSKAAVPAKAS---DEEGTRVSI 64 A G++ +A A + + V ++ E + + + A ++ +++ Sbjct: 82 AAGGLTEAAGQVYLNQAAHLTDGQRIYVPSREEEQTLKEEDSPSDMADAGMGKDTGIINL 141 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N A+ EL +++G+G +A+AI++YRE G F+ +EDLK+V G+ + ++ +T+ Sbjct: 142 NTATKAELL-SLSGIGESRAEAIIAYRETNGGFRKIEDLKKVDGIKEGIFQKIREQITV 199 >UniRef50_Q0A9Z1 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A9Z1_ALHEH Length = 90 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 40/64 (62%) Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 R+ IN A A LA + GVG +AQAIV +RE GPF +V+DL QV G+G + +E N Sbjct: 26 DRIDINTADAGLLAEELVGVGESRAQAIVEHREANGPFGSVDDLTQVSGIGETTLEENRE 85 Query: 120 VLTL 123 + + Sbjct: 86 RIRV 89 >UniRef50_Q2JI81 Phospholipase D/competence protein ComEA helix-hairpin-helix domain protein n=2 Tax=Synechococcus RepID=Q2JI81_SYNJB Length = 591 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 5/79 (6%) Query: 44 AQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 + S + AS RV++N A+A EL + + G+G AQ I+ R PF ++EDL Sbjct: 517 SPSPSVAFPVASPGGSPRVNLNTATAAELEQ-LPGIGPALAQRIIEAR----PFSSLEDL 571 Query: 104 KQVPGMGNSLVERNLAVLT 122 ++V G+G + +E+ +T Sbjct: 572 QRVNGIGPARIEQLRDRVT 590 >UniRef50_C2M102 ComE operon protein 1 n=1 Tax=Staphylococcus hominis SK119 RepID=C2M102_STAHO Length = 220 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 6/106 (5%) Query: 17 AGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAM 76 +S + P ETK A + E +V++N A+ EL + Sbjct: 120 INLSEKLTDQKMIYIPNKNETKINATPTNQSNL-----NTSESIKVNLNTANERELLN-V 173 Query: 77 NGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 G+G K + I+ YREE G F VEDLKQV G+G E+ T Sbjct: 174 PGIGPTKVKEIIKYREEKGQFNNVEDLKQVRGIGGKTFEKLKDYFT 219 >UniRef50_Q1ZRP0 Putative DNA uptake protein n=5 Tax=Photobacterium RepID=Q1ZRP0_PHOAS Length = 97 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 46/76 (60%) Query: 48 AAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVP 107 + + +++IN A+ E+L + G+G +KAQAI++YR+ G F +V+DL +V Sbjct: 22 SHAADNMHEGIDIKININTANVEQLDTLLIGIGAEKAQAIINYRKVNGKFASVDDLTKVK 81 Query: 108 GMGNSLVERNLAVLTL 123 G+G + V++N + L Sbjct: 82 GIGEATVDKNRKRIEL 97 >UniRef50_C0DYR9 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYR9_EIKCO Length = 142 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 45/63 (71%), Gaps = 1/63 (1%) Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +V+IN A+A+EL + +NG+G KA AIV YR GPFK+ ED+K V G+GN + ++ + Sbjct: 20 QVNINTATAQEL-QTLNGIGPAKAAAIVEYRTANGPFKSPEDIKNVRGIGNGIYQKISSE 78 Query: 121 LTL 123 +T+ Sbjct: 79 ITV 81 >UniRef50_B3PII0 Integral membrane protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PII0_CELJU Length = 102 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 37 TKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGP 96 ++ A A+ ++ +++ + ++IN A L + + G+G KKA+AI+++R G Sbjct: 17 VQSIAIASDTQIPANKPVAEQAHSLININTADVATLTQ-LKGIGTKKAEAIIAWRNANGK 75 Query: 97 FKTVEDLKQVPGMGNSLVERNLAVLTL 123 FKT+E L V G+G + E N A L++ Sbjct: 76 FKTIEQLMDVKGIGEATFEANRAKLSI 102 >UniRef50_C6P172 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P172_9PROT Length = 153 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V++N AS +EL A+ G+G KAQAI+ YR + GPF +VEDLK V G G+ V + + L Sbjct: 22 VNLNTASKDEL-DAVKGIGPAKAQAIIDYRTKNGPFASVEDLKHVKGFGDKTVAKMRSEL 80 Query: 122 TL 123 ++ Sbjct: 81 SV 82 >UniRef50_A7GT21 Competence protein ComEA helix-hairpin-helix repeat protein n=88 Tax=Bacillus RepID=A7GT21_BACCN Length = 200 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 2/112 (1%) Query: 12 LSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEE 71 + A + + + ++A+ + P + + G ++SIN AS E+ Sbjct: 90 IEKAGGFLPEADVTQVNLAQIMQDQMLLYIPKKGERLHETTLPVQQSG-KISINQASKEQ 148 Query: 72 LARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 L + G+G +KA+AI+ YREE+G F+ +EDL ++ G+G +E+ + + Sbjct: 149 L-ENITGIGPRKAEAIIKYREEHGAFQKIEDLLEIDGIGEKSLEKMKDQIMI 199 >UniRef50_B7GQM9 Competence protein ComEA helix-hairpin-helix repeat protein n=6 Tax=Bifidobacterium longum RepID=B7GQM9_BIFLI Length = 259 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 6/98 (6%) Query: 26 AASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQ 85 + + A P + T ++P Q+ + ++ +++N A+AEEL +++ G+G AQ Sbjct: 167 SDATANPESDTT--QSPHMQTDGSDAGASTH---GLINLNTATAEEL-QSIKGIGPVTAQ 220 Query: 86 AIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 I+ +R G + +V+ L V G+G+ +E +T+ Sbjct: 221 RIIDHRTAIGGYASVDQLLDVKGIGSKTLETMRGQVTV 258 >UniRef50_A9WS83 Competence protein n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WS83_RENSM Length = 268 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 14/129 (10%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAV------ETKAEAPAAQSKAAVPAKASDEEGT- 60 L + A + L+A ++A A T+A+ A Q A AS Sbjct: 141 LFQAIDAAGGATDLAVLSAVNLAAQLADGEQIFLPTQAQIEAGQVPATTTGAASPNASNS 200 Query: 61 ------RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 +V+IN AS ++LA + VG K AQ IV +R ++G F ++DL + G+G L+ Sbjct: 201 SKFPAAKVNINAASVDQLAE-LPKVGPKMAQKIVQWRAQHGKFSAIDDLDAIDGIGPKLL 259 Query: 115 ERNLAVLTL 123 + A++T+ Sbjct: 260 DSLRALVTI 268 >UniRef50_D2RBH1 ComEA protein n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBH1_GARVA Length = 262 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 1/94 (1%) Query: 30 AKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVS 89 +K K ++ ++ + R++IN A+ ++L + + G+G K A I++ Sbjct: 169 SKSNNKSNKGDSNNKSDRSNENTASHQSNTGRININTATLDQL-QTLKGIGPKTAARIIA 227 Query: 90 YREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 R+ G F+++EDL Q+ G+G + + + + Sbjct: 228 QRKRVGYFRSLEDLMQIKGIGPKTLNKFRGNVDV 261 >UniRef50_B6XTW3 Putative uncharacterized protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 RepID=B6XTW3_9BIFI Length = 258 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 1/96 (1%) Query: 26 AASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQ 85 A+S A + E + + P + SD ++IN A + EL + + GVG AQ Sbjct: 161 ASSAATTPNQQPSMEQNGQNKQTSEPTEPSDPADGLLNINTAGSNEL-QTLKGVGPVTAQ 219 Query: 86 AIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 I+ YR + G F V+ L +V G+G + + + Sbjct: 220 RIIDYRNQIGRFDNVDQLLKVNGIGEKTLAKFRDQV 255 >UniRef50_C7MPR3 DNA uptake protein n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MPR3_SACVD Length = 352 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 5/111 (4%) Query: 13 SLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEEL 72 L ++ + AE P + A P+ ++ +V +N A +L Sbjct: 246 DLLTVNLARRVSDGEQIYVGVTPPPGAEHPPVAAVPADPSTSA----AKVDLNTAD-RQL 300 Query: 73 ARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + + GVG A I+ +RE +G F +V L++V G+G R ++++ Sbjct: 301 LQTLPGVGEATASRILEWRERHGRFTSVSQLREVDGIGEKRFARLRDLVSV 351 >UniRef50_C0EWP2 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EWP2_9FIRM Length = 198 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 12/119 (10%) Query: 15 ACAGMSHSALAAA-------SVAKPTAVETKAEAPAA---QSKAAVPAKASDEEGTRVSI 64 A G S A A + +K EA A + AS +E T V+I Sbjct: 81 AAGGFSEKANQTAWNLAEVLQDGMQVYIPSKDEAKEALNEEQSLGKDLSASQKEDT-VNI 139 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N AS EEL + G+G +A A+++ REE G F ++E +K G+G+ + R ++T+ Sbjct: 140 NTASKEELM-TLPGIGESRADAVIACREEKGSFTSIEGIKDAAGIGDGIFNRIKDLITV 197 >UniRef50_A6LNS9 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LNS9_THEM4 Length = 184 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 32 PTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYR 91 P+ ++ ++ + S E +++INNAS EEL + + G+G KAQ I+ +R Sbjct: 94 PSTLKKIKPFIKIKTANVITNSPSGSEDVKININNASVEELMK-LPGIGKVKAQEIIEFR 152 Query: 92 EEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +++G ++ EDL +V G+G +E+ + L Sbjct: 153 KKFGNVQSFEDLLKVKGIGKKTLEKIKPFIEL 184 Score = 80.7 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 38/53 (71%), Gaps = 1/53 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 + IN+A+ E+L ++ G+G KA++I++YRE+ G F +++DL V G+G S + Sbjct: 46 IDINSATFEQLV-SLPGIGPTKAKSIINYREKVGEFLSIDDLLNVSGIGPSTL 97 >UniRef50_A3WQC9 DNA uptake protein, DNA-binding n=1 Tax=Idiomarina baltica OS145 RepID=A3WQC9_9GAMM Length = 110 Score = 95.7 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 1/84 (1%) Query: 41 APAAQSKAAVP-AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKT 99 AP S +P +A++ + +++IN A+A+++A AM GVG KA+ IV +RE+ G FK Sbjct: 26 APTPMSSPLMPYVQAAESQYEKLNINTATADQIAVAMIGVGKSKAENIVKFREQLGGFKN 85 Query: 100 VEDLKQVPGMGNSLVERNLAVLTL 123 ++ L +V G+G +++N LT+ Sbjct: 86 IDQLLEVKGIGQRTLDKNRDRLTI 109 >UniRef50_Q47RQ3 Helix-hairpin-helix DNA-binding, class 1 n=1 Tax=Thermobifida fusca YX RepID=Q47RQ3_THEFY Length = 355 Score = 95.7 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 3/115 (2%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD--EEGTRVSINNAS 68 L A + L ++A+P + S A + R+ +N A+ Sbjct: 238 ALDAAGGPRPDADLGFLNLARPLVDGEQILVGVTPSPMAGEGEGPGLPAGDGRIDLNTAT 297 Query: 69 AEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A++L + + G+G AQ I+ +R G F +VE L V G+G+ ++ + Sbjct: 298 ADQL-QTLPGIGPVLAQRIIDHRASIGGFTSVEQLHDVTGIGDRRFAELRDLVYV 351 >UniRef50_D1AA93 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AA93_THECD Length = 271 Score = 95.3 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 + + G + +N A+AE+L + GVG AQ I+ YR G F++VE L++V G+G Sbjct: 201 PQDAGAPGGLIDLNTATAEQL-ETLPGVGPVLAQRIIEYRTRNGGFRSVEQLQEVTGIGA 259 Query: 112 SLVERNLAVLTL 123 + + Sbjct: 260 RRYAELRTRVRV 271 >UniRef50_C4L439 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L439_EXISA Length = 191 Score = 95.3 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%) Query: 29 VAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIV 88 V K E P +Q +++ E V +N+A+ EEL + G+G KA+AI+ Sbjct: 102 DGVKIIVPKKGETPISQDS-----PSTEVETNGVHVNSATKEELM-TVPGIGPAKAEAIL 155 Query: 89 SYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 ++ + GPFKT E L V G G +E L + Sbjct: 156 NHLKANGPFKTYEALGDVKGFGEKTLESMKPYLLV 190 >UniRef50_C0BTC9 Putative uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 RepID=C0BTC9_9BIFI Length = 263 Score = 95.3 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 27 ASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQA 86 AS + + E + + PA+ +D ++IN A ++EL + + GVG AQ Sbjct: 167 ASTQTTPSQQPSTEPDSQSEPTSGPAEPADPADGLLNINTAGSDEL-QTLKGVGPVTAQR 225 Query: 87 IVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 I+ YR + G F V+ L +V G+G + + + Sbjct: 226 IIDYRNQIGRFDNVDQLLEVKGIGEKTLAKFRDQV 260 >UniRef50_B0ADP5 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ADP5_9CLOT Length = 236 Score = 95.3 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 27 ASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQA 86 + + T V + + ++ A SD +G++++IN A ++L + GVG A Sbjct: 140 ENNSDSTQVTSNKGNNNQANNSSNNATQSDSQGSKININTADLKQLDD-IPGVGEATANK 198 Query: 87 IVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 I+SYR+E G FK++E++K V G+G+ E ++ + Sbjct: 199 ILSYRDENGEFKSIEEIKNVNGIGDKKFENMKDLICV 235 >UniRef50_B6GCK7 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GCK7_9ACTN Length = 256 Score = 94.9 bits (235), Expect = 6e-19, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%) Query: 15 ACAGMSHSA-LAAASVAKPTAVETKAEAPAAQSKAAV-----------PAKASDEEGTRV 62 A G++ A L + + A + P + A S G V Sbjct: 137 AAGGLAEDADLTSVNRAALLTDGQRVYVPRVGEQVAPVEGDGSGGVAGEGAQSTATGQAV 196 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +IN+A EL A+ GVG AQAI+ RE GPF EDL +V G+G E+ + + Sbjct: 197 NINDADLAEL-DALPGVGPATAQAIIDDREANGPFTAPEDLMRVSGIGEKKYEKLKSSIC 255 Query: 123 L 123 + Sbjct: 256 V 256 >UniRef50_Q1QEJ7 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QEJ7_PSYCK Length = 143 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 ++IN A+ EL ++G+G KAQAI+ YRE +G F+TV++L +V G+G V++N L Sbjct: 81 ININRATEGELT-LLHGIGSNKAQAIILYREMFGSFRTVDELTKVKGIGAKTVDKNRGRL 139 Query: 122 TL 123 T+ Sbjct: 140 TV 141 >UniRef50_C9PNI8 DNA topoisomerase TopA n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PNI8_9PAST Length = 128 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 52/90 (57%) Query: 34 AVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREE 93 A EA + + + + +V+IN A+A EL +A+ G+G KKA+AIV YRE Sbjct: 39 AETVNVEAKTVVQQNLTTGQQTVTQTDQVNINTATAIELQKALIGIGTKKAEAIVQYREA 98 Query: 94 YGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +GPF E L +V G+G + +E+N + + L Sbjct: 99 HGPFTAAEQLMEVQGIGKATLEKNKSRIAL 128 >UniRef50_A9WII9 Helix-hairpin-helix motif n=2 Tax=Chloroflexus RepID=A9WII9_CHLAA Length = 245 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 5/111 (4%) Query: 16 CAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT---RVSINNASAEEL 72 AGM A S A + E+P A++ A + EGT V IN A E L Sbjct: 133 TAGMVTEQ-PAPSSDVQVAESGEVESPIAETGRAEEKEEVSAEGTELAPVDINRADRETL 191 Query: 73 ARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ G+G A I++YRE +GPFK+V+DL + G+G + ++ + Sbjct: 192 I-ALPGIGPVLADRIIAYREAHGPFKSVDDLTAISGIGERNINIFRKLVYV 241 >UniRef50_D2ML54 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2ML54_9BACT Length = 106 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 +V +N ++A+EL + + G+G A+ IV +R GPFK+ EDL QV G+G + Sbjct: 33 DGQVDLNTSTAKELQQ-LPGIGKGLAKRIVEFRTANGPFKSAEDLMQVRGIGKKTFAKMK 91 Query: 119 AVLTL 123 +T+ Sbjct: 92 ERITV 96 >UniRef50_Q03F17 DNA uptake protein related DNA-binding protein n=2 Tax=Pediococcus RepID=Q03F17_PEDPA Length = 235 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 8/114 (7%) Query: 17 AGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR-------VSINNASA 69 ++ V P E K P+ S + +S T V+IN AS Sbjct: 123 INLATQLSDQQVVYVPIKGEIKNSDPSQLSAVGSSSISSSSPSTTDSSTEKIVNINTASK 182 Query: 70 EELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 EL +NGVG KKA+ I++YRE+ G FK++EDLKQV G+G+ + E +T+ Sbjct: 183 AELL-TLNGVGDKKAEQIINYREQQGEFKSIEDLKQVQGIGDKIFEGLQDAITV 235 >UniRef50_Q04B44 DNA uptake protein related DNA-binding protein n=12 Tax=Lactobacillus RepID=Q04B44_LACDB Length = 248 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 45/65 (69%), Gaps = 1/65 (1%) Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 G +++N A+A +L + +NG+G KKA+ I++YR+E G FK++++LK+V G+G+ Sbjct: 185 GDLINLNTATASDL-QKLNGIGEKKAEQIIAYRQEKGSFKSIDELKEVSGIGDKTFAAIK 243 Query: 119 AVLTL 123 LT+ Sbjct: 244 DQLTI 248 >UniRef50_D2SCU5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SCU5_9ACTO Length = 278 Score = 94.9 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 5/119 (4%) Query: 9 LITLSLACAGMSHSALAAA-SVAKPTAVETKAEAPAAQSKAAVPAKA---SDEEGTRVSI 64 + A G+ A A+ ++A + + + AA + V + Sbjct: 161 VADAVTAAGGLLPDADPASINLAAVVSDGQQVAVGVPGAAAAGGTVGGTDATSGAGPVDL 220 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N A+A +L A+ G+G AQ IV +RE GPF+TVE L VPG+G + ++T+ Sbjct: 221 NAATAPDL-DALPGIGPVLAQRIVEHRERNGPFRTVEQLDDVPGIGPTTYAELAELVTV 278 >UniRef50_A1U508 Competence protein ComEA helix-hairpin-helix repeat protein n=3 Tax=Marinobacter RepID=A1U508_MARAV Length = 91 Score = 94.6 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 E V+IN A LA +++GVG KAQAI+ YRE GPF ++E L V G+G VE+ Sbjct: 25 SEQPTVNINTADVATLA-SLSGVGESKAQAIIDYREANGPFASIEALADVKGIGARTVEK 83 Query: 117 NLAVLTL 123 N L + Sbjct: 84 NADRLAV 90 >UniRef50_C8W5N5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W5N5_DESAS Length = 214 Score = 94.6 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 23 ALAAASVAKPTAVETKAEAPAAQSKAAVPAKA-SDEEGTRVSINNASAEELARAMNGVGL 81 A+ + T + A + + ++ + RV+IN A EL ++ G+G Sbjct: 113 AVPGQAAGNETGAAQADRSAAGVKETSGTVQSVGSAQSARVNINTAGEAEL-DSLPGIGP 171 Query: 82 KKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A I+ YR+ G F+TVEDLK V G+G ++T+ Sbjct: 172 TMAGRIIEYRQASGSFQTVEDLKNVSGIGEKKFAALKDLITV 213 >UniRef50_A9KHN6 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KHN6_CLOPH Length = 238 Score = 94.6 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 18/135 (13%) Query: 6 KALLITLSLACAGMSHSALAAA-------SVAKPTAVETKAEAPA----------AQSKA 48 KA ++ A G + A A + + V K E + Sbjct: 103 KARVVDAIEAAGGFTKEAAEDAFNQAALITDGQRIYVPNKKEVETLSDVEIAEVVFSNPT 162 Query: 49 AVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 T+V+IN A+ EEL + G+G KA +I+SYR E+G F T+E+L+ + G Sbjct: 163 GKEKNDESSNKTKVNINKATKEELM-TIPGIGEAKALSIISYRTEHGLFSTIEELQNISG 221 Query: 109 MGNSLVERNLAVLTL 123 + +++ R +T+ Sbjct: 222 IKSAVFNRMKDFITV 236 >UniRef50_D2BL64 ComE operon protein 1 n=4 Tax=Lactococcus lactis RepID=D2BL64_LACLK Length = 215 Score = 94.6 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 11/123 (8%) Query: 9 LITLSLACAGMS-HSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEG-------- 59 L+ L G + + + +++ E P ++ S Sbjct: 91 LVDLIKEAGGFTDQADQKSINLSAKLKDEEVIYVPKIGENSSTENTDSSANSVTSQVSTT 150 Query: 60 -TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 +++IN A EL + + GVG KKAQ I+ +R + G F ++EDL +V G G+ +E+ Sbjct: 151 TEKININQADVTEL-QKLTGVGQKKAQDIIDFRTKNGDFISLEDLGKVSGFGDKTLEKLK 209 Query: 119 AVL 121 L Sbjct: 210 DEL 212 >UniRef50_A8ZWL0 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZWL0_DESOH Length = 114 Score = 94.6 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 1/105 (0%) Query: 19 MSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNG 78 ++ ++ ++A T A + + G V+IN AS +EL A+ G Sbjct: 6 LTVLVMSVIAIAMLVMSGTALAEEANKGMQGGKDVVAKAAGQLVNINTASVDELT-ALTG 64 Query: 79 VGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 VG + AQ I+ YRE G FK+VE L+ V G+G ++E+N + +T+ Sbjct: 65 VGKEIAQRIIEYREANGAFKSVEQLQNVKGIGAKILEKNRSRITV 109 >UniRef50_C5CHC5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CHC5_KOSOT Length = 264 Score = 94.6 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 48 AAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVP 107 A +KA + TR+ +N AS +L ++ G+G KA IV YREE+G FK +++L V Sbjct: 113 NAAKSKAENTRDTRLDLNTASKVDLT-SLPGIGEVKAAEIVKYREEHGGFKAIDELINVK 171 Query: 108 GMGNSLVERNLAVLTL 123 G+G + +++ ++ + Sbjct: 172 GIGRATLDKIRNLVRV 187 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 46 SKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQ 105 + E ++++N A+ +EL A+ G+G A+ I+ YRE G F EDL + Sbjct: 188 GSVSTNVPDKSENSGKINVNTATLQELV-ALPGIGPVLAERIIDYREHNGKFHKPEDLLK 246 Query: 106 VPGMGNSLVERNLAVL 121 V G+G + + ++ Sbjct: 247 VSGIGIKTLSKFREMI 262 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 + +N A+ E+ + + G+G +A+AIV++RE G F + E+L QV G+GNS E+ ++ Sbjct: 51 IDLNTATV-EILQLLPGIGETRAKAIVTFRESNGGFSSTEELLQVKGIGNSTYEKLKDLV 109 Query: 122 TL 123 T+ Sbjct: 110 TI 111 >UniRef50_D1Y3C2 ComE operon protein 1 n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3C2_9BACT Length = 205 Score = 94.6 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 9/123 (7%) Query: 9 LITLSLACAGMSHSA-LAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR------ 61 + L A G A + ++A P AA AK++ + + Sbjct: 84 VFQLVEAAGGFRFDADQSQVNLAAPIRDGAHVHVKAAALAPRASAKSASSQDGKRESGTQ 143 Query: 62 -VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 V +N A+ EEL A+ GVG A+ I+ YR+ +GPF + E L +V G+G + + Sbjct: 144 YVYVNTATEEELC-ALPGVGPATARKIIEYRQTHGPFHSAEALLEVSGIGKGKLGHMQTL 202 Query: 121 LTL 123 L Sbjct: 203 LRF 205 >UniRef50_UPI00016942F5 late competence protein (DNA binding and uptake) n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI00016942F5 Length = 177 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 3/104 (2%) Query: 21 HSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR-VSINNASAEELARAMNGV 79 S + +A P A + +P + + S++ G + V+IN A+ ++L + G+ Sbjct: 74 ESKTPSPDLASP-AGQIAETSPVSTIDPVPAKEESNKAGKKTVNINTATEQQLIE-LPGI 131 Query: 80 GLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G KA+AI++YR++ G F+++ +L +V G+G ++ + + + L Sbjct: 132 GKSKAKAILAYRQQKGTFRSIRELLEVKGIGEKMLAKLIPYMRL 175 >UniRef50_C4WC99 ComE operon protein 1 n=1 Tax=Staphylococcus warneri L37603 RepID=C4WC99_STAWA Length = 225 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Query: 4 GIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVS 63 LL T S + + P E + QS++ + + ++ Sbjct: 109 NKAQLLKTADTKQLNFSEKLIDQKLIYVPEKGENSVQ--QVQSQSNQFNGTGNVDKAPIN 166 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +N A+ E+L + + G+G KA+ I+ Y+ + G F +++DLK + G G+ E+ T+ Sbjct: 167 LNLATEEQLMK-VPGIGPSKAKEIIEYKNQKGSFNSIDDLKNIKGFGSKTFEKLKEYFTV 225 >UniRef50_D1NTU4 Competence protein n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NTU4_9BIFI Length = 247 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 47 KAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQV 106 + + + + +N A+A++L + +NGVG A IV YR +GPF +V +L V Sbjct: 166 QTQPAESSDSVDEGLIDLNTANADQL-QTINGVGPVMAARIVEYRNAHGPFTSVNELMAV 224 Query: 107 PGMGNSLVERNLAVLTL 123 G+G + + +T+ Sbjct: 225 KGIGAKTLAKIAPFVTV 241 >UniRef50_C2D6C0 Possible competence protein ComEA family protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6C0_9ACTN Length = 277 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 45 QSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLK 104 Q + A + +S+N AS EL + GVG A I++ R E+GPFK VEDLK Sbjct: 200 QDRGASTTRKGHAPTRPISLNKASKNELLE-LPGVGPAMADRIIADRREHGPFKHVEDLK 258 Query: 105 QVPGMGNSLVERNLAVLTL 123 +V G+G+ E+ L + Sbjct: 259 RVKGIGSKKFEKVRKYLHV 277 >UniRef50_Q21IS7 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IS7_SACD2 Length = 119 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 12/109 (11%) Query: 15 ACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELAR 74 A + A +VA P A + E PAA+++ V V+IN A AE +A Sbjct: 23 AMLAVCAFLAAGQAVAAPKA---ETEQPAAETQQVVNT---------VNINKADAEAIAT 70 Query: 75 AMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ GVG KA+AIV+YR ++G F ++E L +V G+G + V +N + LTL Sbjct: 71 ALVGVGKAKAEAIVAYRTQHGEFTSIEQLAEVKGIGEATVAKNKSRLTL 119 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B0K405 Competence protein ComEA helix-hairpin-helix rep... 138 6e-32 UniRef50_B5YE67 ComEA protein n=1 Tax=Dictyoglomus thermophilum ... 136 1e-31 UniRef50_B8E2A5 Competence protein ComEA helix-hairpin-helix rep... 135 4e-31 UniRef50_A7ZIK0 Competence protein ComEA n=33 Tax=Enterobacteria... 134 1e-30 UniRef50_P0AAR8 Uncharacterized protein ybaV n=69 Tax=Enterobact... 133 1e-30 UniRef50_Q3AF21 Competence protein n=1 Tax=Carboxydothermus hydr... 133 2e-30 UniRef50_B7GKB3 Late competence protein ComEA (DNA binding and u... 131 7e-30 UniRef50_C9RUW2 Competence protein ComEA helix-hairpin-helix rep... 129 2e-29 UniRef50_C0GEP7 Competence protein ComEA helix-hairpin-helix rep... 127 8e-29 UniRef50_A4XKH1 Competence protein ComEA helix-hairpin-helix rep... 127 1e-28 UniRef50_C9R8F1 Competence protein ComEA helix-hairpin-helix rep... 126 2e-28 UniRef50_C0X8I1 Competence protein comEA n=22 Tax=Enterococcus f... 126 2e-28 UniRef50_Q70T35 ComEA protein n=2 Tax=Bacillus RepID=Q70T35_BACME 126 2e-28 UniRef50_B9MRQ3 Competence protein ComEA helix-hairpin-helix rep... 126 3e-28 UniRef50_C2BUY4 Possible helix-hairpin-helix DNA-binding motif-c... 125 3e-28 UniRef50_D2LT80 Competence protein ComEA helix-hairpin-helix rep... 125 3e-28 UniRef50_Q9KD84 Late competence operon required for DNA binding ... 125 4e-28 UniRef50_B9CKK4 Competence protein n=1 Tax=Atopobium rimae ATCC ... 125 5e-28 UniRef50_UPI0001C426BA late competence operon required for DNA b... 125 6e-28 UniRef50_C0ZB15 Putative uncharacterized protein n=1 Tax=Breviba... 124 9e-28 UniRef50_D1VU74 Late competence protein n=1 Tax=Peptoniphilus la... 124 1e-27 UniRef50_B0G876 Putative uncharacterized protein n=2 Tax=Clostri... 124 1e-27 UniRef50_A1R6X3 Putative comEA protein n=1 Tax=Arthrobacter aure... 123 1e-27 UniRef50_Q65H41 ComEA n=6 Tax=Bacillus RepID=Q65H41_BACLD 123 2e-27 UniRef50_C7R5D7 Helix-hairpin-helix DNA-binding class 1 n=1 Tax=... 123 2e-27 UniRef50_B1I6D0 Competence protein ComEA helix-hairpin-helix rep... 123 2e-27 UniRef50_A7NJW3 Competence protein ComEA helix-hairpin-helix rep... 123 2e-27 UniRef50_A6CQY2 Late competence protein (DNA binding and uptake)... 123 2e-27 UniRef50_A1HQZ8 Competence protein ComEA helix-hairpin-helix rep... 123 2e-27 UniRef50_C8NGS6 Competence protein ComEA n=1 Tax=Granulicatella ... 123 3e-27 UniRef50_Q4L6U1 Similar to late competence operon protein requir... 122 3e-27 UniRef50_B1HUH7 ComE operon protein 1 n=2 Tax=Bacillaceae RepID=... 122 4e-27 UniRef50_B6FJL2 Putative uncharacterized protein n=1 Tax=Clostri... 122 4e-27 UniRef50_A6WDK9 Competence protein ComEA helix-hairpin-helix rep... 122 4e-27 UniRef50_D1CCQ9 Competence protein ComEA helix-hairpin-helix rep... 122 4e-27 UniRef50_Q03VU1 DNA uptake protein related DNA-binding protein n... 121 5e-27 UniRef50_C1YNH2 DNA uptake protein n=1 Tax=Nocardiopsis dassonvi... 121 5e-27 UniRef50_B2GBB2 Competence protein n=4 Tax=Lactobacillus RepID=B... 121 6e-27 UniRef50_Q3XYU3 Competence protein ComEA helix-hairpin-helix reg... 121 6e-27 UniRef50_A7VCH8 Putative uncharacterized protein n=1 Tax=Clostri... 121 6e-27 UniRef50_C4V2X7 Competence protein ComEA helix-hairpin-helix rep... 121 7e-27 UniRef50_A4EC57 Putative uncharacterized protein n=1 Tax=Collins... 121 8e-27 UniRef50_Q2RKY9 Competence protein ComEA helix-hairpin-helix reg... 121 9e-27 UniRef50_Q71ZI6 DNA-binding protein, ComEA family n=18 Tax=Liste... 120 1e-26 UniRef50_A5N6K8 Predicted DNA-binding competence protein n=14 Ta... 120 1e-26 UniRef50_Q8EPV5 Late competence protein (DNA binding and uptake)... 120 1e-26 UniRef50_C9CQC8 DNA-binding protein n=3 Tax=Enterococcus casseli... 120 1e-26 UniRef50_Q47RQ3 Helix-hairpin-helix DNA-binding, class 1 n=1 Tax... 120 2e-26 UniRef50_A8Z4C9 Possible competence protein comEA n=52 Tax=Staph... 120 2e-26 UniRef50_C9KN34 Competence protein n=3 Tax=Veillonellaceae RepID... 120 2e-26 UniRef50_D1BEI9 DNA uptake protein n=1 Tax=Sanguibacter keddieii... 120 2e-26 UniRef50_Q6M3A1 Secreted DNA uptake protein or related DNA-bindi... 120 2e-26 UniRef50_Q0AWK6 Competence protein ComEA helix-hairpin-helix reg... 120 2e-26 UniRef50_C5C480 Competence protein ComEA helix-hairpin-helix rep... 120 2e-26 UniRef50_C9LCS3 Competence protein CelA n=1 Tax=Blautia hansenii... 119 3e-26 UniRef50_Q65RQ5 ComEA protein n=2 Tax=Pasteurellaceae RepID=Q65R... 119 3e-26 UniRef50_A5KJM8 Putative uncharacterized protein n=2 Tax=Ruminoc... 119 3e-26 UniRef50_A5ZYC6 Putative uncharacterized protein n=1 Tax=Ruminoc... 118 4e-26 UniRef50_C1TL78 Competence protein ComEA-like protein with helix... 118 4e-26 UniRef50_C2E8F5 Competence protein ComEA n=1 Tax=Lactobacillus r... 118 5e-26 UniRef50_D1B5R3 Competence protein ComEA helix-hairpin-helix rep... 118 5e-26 UniRef50_C7MPR3 DNA uptake protein n=1 Tax=Saccharomonospora vir... 118 5e-26 UniRef50_C7N574 Competence protein ComEA-like protein with helix... 118 6e-26 UniRef50_C4FWP5 Putative uncharacterized protein n=1 Tax=Catonel... 118 6e-26 UniRef50_A8VU71 HAD superfamily (Subfamily IIIA) phosphatase, TI... 118 6e-26 UniRef50_C0CK25 Putative uncharacterized protein n=1 Tax=Blautia... 118 6e-26 UniRef50_P39694 ComE operon protein 1 n=3 Tax=Bacillus RepID=COM... 118 7e-26 UniRef50_B0VFU5 Putative ComEA protein-related protein n=1 Tax=C... 118 7e-26 UniRef50_Q5LYL1 Late competence protein required for DNA binding... 117 9e-26 UniRef50_Q5WHH4 Late competence protein ComEA n=1 Tax=Bacillus c... 117 1e-25 UniRef50_A4AGG3 Competence protein ComEA helix-hairpin-helix reg... 117 1e-25 UniRef50_Q67SA3 Putative DNA-binding protein n=1 Tax=Symbiobacte... 117 1e-25 UniRef50_Q5HNV7 ComE operon protein 1, putative n=6 Tax=Staphylo... 117 1e-25 UniRef50_B0NE87 Putative uncharacterized protein n=1 Tax=Clostri... 117 1e-25 UniRef50_D2SCU5 Competence protein ComEA helix-hairpin-helix rep... 116 2e-25 UniRef50_B5Y881 ComEA protein n=1 Tax=Coprothermobacter proteoly... 116 2e-25 UniRef50_A7GT21 Competence protein ComEA helix-hairpin-helix rep... 116 2e-25 UniRef50_D1BUZ0 Competence protein ComEA helix-hairpin-helix rep... 116 2e-25 UniRef50_C7GZM9 Competence protein CelA n=1 Tax=Eubacterium saph... 116 2e-25 UniRef50_C5VAZ4 Competence protein, ComEA helix-hairpin-helix re... 116 2e-25 UniRef50_C1PB54 Competence protein ComEA helix-hairpin-helix rep... 116 2e-25 UniRef50_C5EH62 Putative uncharacterized protein n=1 Tax=Clostri... 116 2e-25 UniRef50_C2D6C0 Possible competence protein ComEA family protein... 116 2e-25 UniRef50_C5QSY0 Competence protein comEA n=1 Tax=Staphylococcus ... 116 2e-25 UniRef50_Q03QM7 DNA uptake protein related DNA-binding protein n... 116 3e-25 UniRef50_C2AU83 Competence protein ComEA-like protein with helix... 116 3e-25 UniRef50_A9B5P5 Competence protein ComEA helix-hairpin-helix rep... 116 3e-25 UniRef50_C8PAT3 Competence protein CelA n=1 Tax=Lactobacillus in... 116 3e-25 UniRef50_UPI000185081A ComE operon protein 1 n=1 Tax=Bacillus co... 116 3e-25 UniRef50_C6RS77 Competence protein, ComEA helix-hairpin-helix re... 116 3e-25 UniRef50_Q1J5X8 COME operon protein 1 n=11 Tax=Streptococcus pyo... 115 4e-25 UniRef50_B6G1L2 Putative uncharacterized protein n=1 Tax=Clostri... 115 4e-25 UniRef50_C0D545 Putative uncharacterized protein n=2 Tax=Clostri... 115 4e-25 UniRef50_UPI0001BC3585 competence protein ComEA n=1 Tax=Butyrivi... 115 4e-25 UniRef50_A4F9N2 Competence protein ComEA helix-hairpin-helix reg... 115 5e-25 UniRef50_B0MCG3 Putative uncharacterized protein n=2 Tax=Clostri... 115 5e-25 UniRef50_B5CMB0 Putative uncharacterized protein n=1 Tax=Ruminoc... 114 7e-25 UniRef50_C4L439 Competence protein ComEA helix-hairpin-helix rep... 114 8e-25 UniRef50_D2NT61 DNA uptake protein n=2 Tax=Rothia mucilaginosa R... 114 9e-25 UniRef50_D1AA93 Competence protein ComEA helix-hairpin-helix rep... 114 9e-25 UniRef50_B6GCK7 Putative uncharacterized protein n=2 Tax=Collins... 114 9e-25 UniRef50_A6BGR9 Putative uncharacterized protein n=1 Tax=Dorea l... 114 9e-25 UniRef50_C4Z0V0 Competence protein ComEA n=1 Tax=Eubacterium eli... 114 1e-24 UniRef50_A5VJ84 Competence protein ComEA helix-hairpin-helix rep... 114 1e-24 UniRef50_A8MHJ7 Competence protein ComEA helix-hairpin-helix rep... 114 1e-24 UniRef50_C3JRX5 DNA-binding protein n=2 Tax=Rhodococcus erythrop... 114 1e-24 UniRef50_Q1WU47 ComE operon protein 1 n=2 Tax=Lactobacillus sali... 113 1e-24 UniRef50_C5NY25 ComE operon protein 1 n=1 Tax=Gemella haemolysan... 113 1e-24 UniRef50_C7XTN3 Competence protein n=1 Tax=Lactobacillus coleoho... 113 1e-24 UniRef50_B3WE30 ComE operon protein 1 n=9 Tax=Lactobacillus RepI... 113 1e-24 UniRef50_C2E267 Competence protein ComEA n=4 Tax=Lactobacillus j... 113 2e-24 UniRef50_C9A015 Late competence protein ComEA n=1 Tax=Enterococc... 113 2e-24 UniRef50_C2KND1 Possible helix-hairpin-helix repeat-containing c... 113 2e-24 UniRef50_C2M102 ComE operon protein 1 n=1 Tax=Staphylococcus hom... 113 2e-24 UniRef50_C0FYV5 Putative uncharacterized protein n=1 Tax=Rosebur... 113 2e-24 UniRef50_C6A7M7 Putative DNA-binding protein n=4 Tax=Bifidobacte... 113 2e-24 UniRef50_B9LBV6 Helix-hairpin-helix DNA-binding class 1 n=3 Tax=... 113 2e-24 UniRef50_Q49Y31 Putative DNA uptake protein and related DNA-bind... 113 2e-24 UniRef50_A3CLU6 DNA uptake protein, putative n=38 Tax=Streptococ... 113 2e-24 UniRef50_UPI000178992B competence protein ComEA helix-hairpin-he... 112 3e-24 UniRef50_A4J7G9 Competence protein ComEA helix-hairpin-helix rep... 112 3e-24 UniRef50_C7MDA6 Competence protein ComEA-like protein with helix... 112 3e-24 UniRef50_D2BL64 ComE operon protein 1 n=4 Tax=Lactococcus lactis... 112 3e-24 UniRef50_A8RS55 Putative uncharacterized protein n=1 Tax=Clostri... 112 3e-24 UniRef50_C2C1Y0 ComEA family DNA-binding competence protein n=1 ... 112 3e-24 UniRef50_A1SHW1 Competence protein ComEA helix-hairpin-helix rep... 112 3e-24 UniRef50_Q38WQ9 Putative bacterial type II secretion/competence ... 112 3e-24 UniRef50_A4W7B3 Competence protein ComEA helix-hairpin-helix rep... 112 4e-24 UniRef50_B0S189 Late competence protein n=2 Tax=Finegoldia magna... 112 4e-24 UniRef50_B1N069 DNA uptake protein n=1 Tax=Leuconostoc citreum K... 112 4e-24 UniRef50_C4WC99 ComE operon protein 1 n=1 Tax=Staphylococcus war... 112 4e-24 UniRef50_A6NW57 Putative uncharacterized protein n=1 Tax=Bactero... 112 4e-24 UniRef50_A7HNQ6 Competence protein ComEA helix-hairpin-helix rep... 111 5e-24 UniRef50_UPI0001C358FF helix-hairpin-helix repeat-containing com... 111 5e-24 UniRef50_A0LSY6 Helix-hairpin-helix motif n=1 Tax=Acidothermus c... 111 7e-24 UniRef50_Q4JWS7 Putative uncharacterized protein n=2 Tax=Coryneb... 111 7e-24 UniRef50_A5IND1 Competence protein ComEA helix-hairpin-helix rep... 111 7e-24 UniRef50_A7BDT8 Putative uncharacterized protein n=1 Tax=Actinom... 111 8e-24 UniRef50_D1Y3C2 ComE operon protein 1 n=1 Tax=Pyramidobacter pis... 111 8e-24 UniRef50_B8FUQ3 Competence protein ComEA helix-hairpin-helix rep... 111 8e-24 UniRef50_A4XAF1 Competence protein ComEA helix-hairpin-helix rep... 110 1e-23 UniRef50_C9LMX1 Late competence protein ComEA n=1 Tax=Dialister ... 110 1e-23 UniRef50_B9KYW7 Competence protein ComEA helix-hairpin-helix rep... 110 1e-23 UniRef50_UPI00016BFF02 late competence protein (DNA binding and ... 110 1e-23 UniRef50_C9M7Q3 Putative comEA protein n=1 Tax=Jonquetella anthr... 110 2e-23 UniRef50_C4FEZ1 Putative uncharacterized protein n=1 Tax=Bifidob... 110 2e-23 UniRef50_C5RDZ4 Competence protein ComEA helix-hairpin-helix rep... 110 2e-23 UniRef50_A9KHN6 Competence protein ComEA helix-hairpin-helix rep... 110 2e-23 UniRef50_C8W6Z4 Competence protein ComEA helix-hairpin-helix rep... 109 2e-23 UniRef50_C9XMM2 Putative competence protein n=4 Tax=Clostridium ... 109 2e-23 UniRef50_D2PUY5 Competence protein ComEA helix-hairpin-helix rep... 109 2e-23 UniRef50_D0WN87 Competence protein n=1 Tax=Actinomyces sp. oral ... 109 2e-23 UniRef50_A8FFE5 Competence protein EA n=2 Tax=Bacillus pumilus R... 109 2e-23 UniRef50_C4DRK5 Competence protein ComEA-like protein with helix... 109 2e-23 UniRef50_C0W2X2 Competence protein ComEA helix-hairpin-helix rep... 109 3e-23 UniRef50_C5CCD9 Competence protein ComEA-like protein with helix... 109 3e-23 UniRef50_D0BMQ2 Competence protein ComEA n=1 Tax=Granulicatella ... 109 3e-23 UniRef50_C0BAZ1 Putative uncharacterized protein n=1 Tax=Coproco... 109 4e-23 UniRef50_C7MNJ1 Competence protein ComEA-like protein with helix... 109 4e-23 UniRef50_Q042S8 DNA uptake protein related DNA-binding protein n... 108 4e-23 UniRef50_Q6F851 Putative DNA uptake protein and/or related DNA-b... 108 4e-23 UniRef50_C5RD12 Late competence protein required for DNA binding... 108 5e-23 UniRef50_Q03F17 DNA uptake protein related DNA-binding protein n... 108 5e-23 UniRef50_C8WQ77 Competence protein ComEA helix-hairpin-helix rep... 108 5e-23 UniRef50_UPI0001C4262A putative S-layer protein n=1 Tax=Bacillus... 108 5e-23 UniRef50_Q3CZ73 Competence protein CelA (Fragment) n=4 Tax=Strep... 108 6e-23 UniRef50_C4FZS7 Putative uncharacterized protein n=1 Tax=Abiotro... 108 6e-23 UniRef50_D1BMN5 Competence protein ComEA helix-hairpin-helix rep... 108 7e-23 UniRef50_Q8XIJ9 ComE operon protein n=10 Tax=Firmicutes RepID=Q8... 108 7e-23 UniRef50_A0R105 DNA-binding protein n=22 Tax=Mycobacterium RepID... 108 7e-23 UniRef50_B7ASY0 Putative uncharacterized protein n=1 Tax=Bactero... 108 7e-23 UniRef50_C4Z9D4 Unspecific high-affinity DNA-binding protein n=1... 108 8e-23 UniRef50_Q2JDK7 Helix-hairpin-helix DNA-binding, class 1 n=5 Tax... 107 9e-23 UniRef50_C8WHN4 Competence protein ComEA helix-hairpin-helix rep... 107 9e-23 UniRef50_Q88LW4 ComEA-related protein n=4 Tax=Pseudomonas RepID=... 107 1e-22 UniRef50_D0LC07 Competence protein ComEA helix-hairpin-helix rep... 107 1e-22 UniRef50_D0ME87 Competence protein ComEA helix-hairpin-helix rep... 107 1e-22 UniRef50_C6WRA2 Competence protein ComEA helix-hairpin-helix rep... 107 1e-22 UniRef50_B0ADP5 Putative uncharacterized protein n=1 Tax=Clostri... 107 1e-22 UniRef50_Q3K1S5 ComE operon protein 1, putative n=8 Tax=Streptoc... 106 2e-22 UniRef50_B0TBC6 Competence protein n=1 Tax=Heliobacterium modest... 106 2e-22 UniRef50_C8W5N5 Competence protein ComEA helix-hairpin-helix rep... 106 2e-22 UniRef50_C7Q5D9 Putative DNA-binding protein n=1 Tax=Catenulispo... 106 2e-22 UniRef50_D2AZL0 DNA uptake protein and related DNA-binding prote... 106 2e-22 UniRef50_D1Y9S6 ComEA protein n=3 Tax=Propionibacterium acnes Re... 106 2e-22 UniRef50_C6JE10 DNA uptake protein n=1 Tax=Ruminococcus sp. 5_1_... 106 2e-22 UniRef50_Q7N0L8 Similar to unknown protein YbaV of Escherichia c... 106 2e-22 UniRef50_UPI000185C4E2 DNA-binding protein n=1 Tax=Corynebacteri... 106 2e-22 UniRef50_C7HU15 ComEA family DNA-binding protein n=1 Tax=Anaeroc... 106 2e-22 UniRef50_C0WQ86 Competence protein ComEA n=3 Tax=Lactobacillus R... 106 2e-22 UniRef50_Q0SH70 Putative uncharacterized protein n=2 Tax=Rhodoco... 106 2e-22 UniRef50_Q83MW2 ComE operon protein 1-like protein n=2 Tax=Troph... 106 3e-22 UniRef50_D0WEQ0 Competence protein n=1 Tax=Slackia exigua ATCC 7... 106 3e-22 UniRef50_A8SYI0 Putative uncharacterized protein n=1 Tax=Coproco... 106 3e-22 UniRef50_A9WS83 Competence protein n=1 Tax=Renibacterium salmoni... 106 3e-22 UniRef50_A8U897 Competence protein comEA n=1 Tax=Carnobacterium ... 105 3e-22 UniRef50_A6LQS8 Competence protein ComEA helix-hairpin-helix rep... 105 3e-22 UniRef50_C0BTC9 Putative uncharacterized protein n=1 Tax=Bifidob... 105 4e-22 UniRef50_B5H760 DNA-binding protein n=1 Tax=Streptomyces pristin... 105 5e-22 UniRef50_D1C4G8 Helix-hairpin-helix motif protein n=1 Tax=Sphaer... 105 5e-22 UniRef50_D0LIE3 Competence protein ComEA helix-hairpin-helix rep... 105 5e-22 UniRef50_C0EWP2 Putative uncharacterized protein n=1 Tax=Eubacte... 105 5e-22 UniRef50_B8GUY5 DNA uptake protein and related DNA-binding prote... 105 5e-22 UniRef50_A3N254 DNA uptake protein n=5 Tax=Pasteurellaceae RepID... 105 5e-22 UniRef50_D1VKG0 Helix-hairpin-helix motif protein n=1 Tax=Franki... 105 6e-22 UniRef50_C6LGL8 Competence protein n=1 Tax=Bryantella formatexig... 105 6e-22 UniRef50_C4G962 Putative uncharacterized protein n=1 Tax=Shuttle... 105 6e-22 UniRef50_C7RHK1 Competence protein ComEA helix-hairpin-helix rep... 104 6e-22 UniRef50_B9DNI3 Putative uncharacterized protein n=1 Tax=Staphyl... 104 6e-22 UniRef50_A0Q1S7 Competence protein n=3 Tax=Clostridium RepID=A0Q... 104 6e-22 UniRef50_B5HXE1 DNA-binding protein n=14 Tax=Bacteria RepID=B5HX... 104 6e-22 UniRef50_B9DUQ8 Putative competence protein n=2 Tax=Streptococcu... 104 6e-22 UniRef50_Q1AVU6 Competence protein ComEA helix-hairpin-helix reg... 104 7e-22 UniRef50_C2ERZ4 Competence protein comEA n=1 Tax=Lactobacillus v... 104 7e-22 UniRef50_B7GQM9 Competence protein ComEA helix-hairpin-helix rep... 104 8e-22 UniRef50_A8GAR4 Competence protein ComEA helix-hairpin-helix rep... 104 8e-22 UniRef50_A3DET3 Competence protein ComEA helix-hairpin-helix rep... 104 8e-22 UniRef50_D2RL62 Soluble ligand binding domain protein n=1 Tax=Ac... 104 8e-22 UniRef50_B8H8S8 Competence protein ComEA helix-hairpin-helix rep... 104 1e-21 UniRef50_A1TBZ2 Competence protein ComEA helix-hairpin-helix rep... 104 1e-21 UniRef50_B4U201 DNA receptor late competence protein ComEA n=4 T... 104 1e-21 UniRef50_C8NQL5 DNA uptake protein n=5 Tax=Corynebacterium RepID... 103 1e-21 UniRef50_C6IZI4 Competence protein ComEA helix-hairpin-helix rep... 103 1e-21 UniRef50_A0JX55 Competence protein ComEA helix-hairpin-helix rep... 103 1e-21 UniRef50_UPI0001976DE0 hypothetical protein BbifN4_05079 n=1 Tax... 103 1e-21 UniRef50_D2QAK9 COME operon protein 1 n=4 Tax=Bifidobacterium Re... 103 1e-21 UniRef50_B6XA89 Putative uncharacterized protein n=3 Tax=Provide... 103 1e-21 UniRef50_C7NJ59 DNA uptake protein n=1 Tax=Kytococcus sedentariu... 103 1e-21 UniRef50_Q04B44 DNA uptake protein related DNA-binding protein n... 103 2e-21 UniRef50_D1NTU4 Competence protein n=1 Tax=Bifidobacterium galli... 103 2e-21 UniRef50_B6XTW3 Putative uncharacterized protein n=1 Tax=Bifidob... 103 2e-21 UniRef50_C0VPS9 DNA uptake protein n=2 Tax=Acinetobacter RepID=C... 103 2e-21 UniRef50_B2V0B5 ComE operon protein 1 n=3 Tax=Clostridium RepID=... 103 2e-21 UniRef50_B8CXM4 Competence protein ComEA helix-hairpin-helix rep... 103 2e-21 UniRef50_B6W833 Putative uncharacterized protein n=1 Tax=Anaeroc... 103 3e-21 UniRef50_B9E6X9 Putative uncharacterized protein n=1 Tax=Macroco... 103 3e-21 UniRef50_A3TJH6 Putative DNA-binding protein n=1 Tax=Janibacter ... 103 3e-21 UniRef50_C6CQU2 Competence protein ComEA helix-hairpin-helix rep... 102 3e-21 UniRef50_Q4ZQA5 Competence protein ComEA helix-hairpin-helix reg... 102 3e-21 UniRef50_B1VY20 Putative DNA-binding protein n=1 Tax=Streptomyce... 102 4e-21 UniRef50_C7GEH7 ComE operon protein n=1 Tax=Roseburia intestinal... 102 4e-21 UniRef50_B7H014 ComE1 n=11 Tax=Acinetobacter RepID=B7H014_ACIB3 102 4e-21 UniRef50_C0WJQ2 Possible competence protein EA n=4 Tax=Corynebac... 102 4e-21 UniRef50_D2RBH1 ComEA protein n=1 Tax=Gardnerella vaginalis 409-... 102 4e-21 UniRef50_B2A1F6 Competence protein ComEA helix-hairpin-helix rep... 101 5e-21 UniRef50_C1XFW6 Helix-hairpin-helix protein n=1 Tax=Meiothermus ... 101 6e-21 UniRef50_Q9RIA7 ComEA protein (Fragment) n=4 Tax=Neisseria RepID... 101 7e-21 UniRef50_B2K6W2 Competence protein ComEA helix-hairpin-helix rep... 101 7e-21 UniRef50_B5EQJ4 Competence protein ComEA helix-hairpin-helix rep... 101 7e-21 UniRef50_B1YKR9 Competence protein ComEA helix-hairpin-helix rep... 101 8e-21 Sequences not found previously or not previously below threshold: >UniRef50_B0K405 Competence protein ComEA helix-hairpin-helix repeat protein n=10 Tax=Thermoanaerobacterales RepID=B0K405_THEPX Length = 201 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 2/123 (1%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 M+ G + ++ ++ A + + L ++A+ E + P +A V + + Sbjct: 80 MEEGER-VIDAINKAGGPLEEADLTNINLAQKVKDEQMIKVPKKGEEAMVSFSDTTAKDK 138 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +++IN A+ EEL + + G+G A+ I+ +RE GPFK +ED+ V +G + E+ Sbjct: 139 KININTATREEL-QTLPGIGPVTAERIIEFRESKGPFKKIEDIVNVSRIGPKMFEQIKDK 197 Query: 121 LTL 123 +T+ Sbjct: 198 ITV 200 >UniRef50_B5YE67 ComEA protein n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YE67_DICT6 Length = 184 Score = 136 bits (344), Expect = 1e-31, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 7/121 (5%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD------EEGTR 61 ++ ++LA + + L ++A +K P +K + E+ + Sbjct: 64 VIDAVNLAGGPLPSADLDRINLADFLKDGSKIYIPPKDDNLDSNSKNQNALKDGLEKKGK 123 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN AS EEL ++ G+G AQ I+ YREE G F + EDL V G+G +E+ + Sbjct: 124 VNINTASKEEL-ESLPGIGPTLAQRIIEYREENGVFTSAEDLLNVKGIGEKKLEKIKDQI 182 Query: 122 T 122 T Sbjct: 183 T 183 >UniRef50_B8E2A5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2A5_DICTD Length = 187 Score = 135 bits (340), Expect = 4e-31, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 10/124 (8%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKAS---------DEE 58 ++ ++LA + + L ++A +K P+ + K+ + Sbjct: 64 VIDAINLAGGSLPSADLDKVNLADFLRDGSKIYIPSKLENSENELKSQAILSTRKIDTSK 123 Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 +V+IN AS EEL ++ G+G AQ I+ YREE GPF + EDL V G+G +ER Sbjct: 124 SDKVNINTASKEEL-ESLPGIGPTLAQRIIEYREENGPFGSAEDLLNVKGIGEKKLERIR 182 Query: 119 AVLT 122 +T Sbjct: 183 DQIT 186 >UniRef50_A7ZIK0 Competence protein ComEA n=33 Tax=Enterobacteriaceae RepID=A7ZIK0_ECO24 Length = 123 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 122/123 (99%), Positives = 122/123 (99%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 MKHGIKALLITLSLACAGMSHSALAAASVAKPT VETKAEAPAAQSKAAVPAKASDEEGT Sbjct: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTTVETKAEAPAAQSKAAVPAKASDEEGT 60 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV Sbjct: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 Query: 121 LTL 123 LTL Sbjct: 121 LTL 123 >UniRef50_P0AAR8 Uncharacterized protein ybaV n=69 Tax=Enterobacteriaceae RepID=YBAV_ECOLI Length = 123 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 123/123 (100%), Positives = 123/123 (100%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT Sbjct: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV Sbjct: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 Query: 121 LTL 123 LTL Sbjct: 121 LTL 123 >UniRef50_Q3AF21 Competence protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AF21_CARHZ Length = 204 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 13/126 (10%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKA------------SDE 57 + A + + ++ ++A + K P A S Sbjct: 79 DAIEKARGMLPLADDSSINLAAKVSDGQKIYIPFKNETTTASASTNKAFGQQNALKGSGG 138 Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 + +V+IN A+AEEL + GVG A I+ YRE+ GPF T+EDLK+V G+G+ E Sbjct: 139 QEAKVNINTATAEELDE-LPGVGPATAAKIIEYREQNGPFATIEDLKKVKGIGDKKFETL 197 Query: 118 LAVLTL 123 +T+ Sbjct: 198 KDYITV 203 >UniRef50_B7GKB3 Late competence protein ComEA (DNA binding and uptake) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GKB3_ANOFW Length = 198 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD-EEGTRVSINN 66 + + LA + ++A E P V + +++IN Sbjct: 82 IHDVIQLAGGLTDEADETKVNLAMKVHDEMVIYVPKKGEDIIVETTSQTGSSSGKININT 141 Query: 67 ASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ E+L + + G+G KA AI++YREE+GPF+ VEDL V G+G+ +E+ + + Sbjct: 142 ATIEQL-QTLQGIGPVKAAAIIAYREEHGPFQKVEDLLNVSGIGSKSLEKIKEQIVV 197 >UniRef50_C9RUW2 Competence protein ComEA helix-hairpin-helix repeat protein n=7 Tax=Geobacillus RepID=C9RUW2_GEOSY Length = 207 Score = 129 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 7/125 (5%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVP------AKASDEE 58 + + LA + ++A E PA A + Sbjct: 83 DARVRDVIVLAGGLTDEADETKVNLAAKVRDEMMIYVPAKGEAAPASNAVGKSPSDGARD 142 Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 G +V++N A+ EEL + + G+G KA+AI++YREE+GPF+ VEDL V G+G +E+ Sbjct: 143 GPQVAVNMATEEELMQ-LPGIGPAKAKAIIAYREEHGPFQRVEDLLNVTGIGEKTLEKLK 201 Query: 119 AVLTL 123 L + Sbjct: 202 PYLLV 206 >UniRef50_C0GEP7 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEP7_9FIRM Length = 192 Score = 127 bits (320), Expect = 8e-29, Method: Composition-based stats. Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 3/116 (2%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 + L A + A ++A+P + P A+ E +V+IN A Sbjct: 79 IYEALEAAGGVLPDGDAHALNLAEPLYDGRRINVPFAED--VETPTGGVAESGKVNINTA 136 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +A EL A+ G+G KA AI SYREE GPF++VEDL QV G+G VE +TL Sbjct: 137 TAAEL-EALPGIGPAKAAAISSYREENGPFRSVEDLVQVSGIGVKTVESLKEHITL 191 >UniRef50_A4XKH1 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XKH1_CALS8 Length = 214 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 10/123 (8%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQ---------SKAAVPAKASDEEGT 60 + A + +S + + ++A+ K P S+ A + +S + Sbjct: 92 DAIEAAGGVLPNSDMNSLNLAEKIQDGQKIYVPKIGEMQTQSNLSSEVAQNSTSSSGQSG 151 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +++IN AS EEL + ++ +G K A+ I+ YR+E+GPFK++E++K V G+G+ + E Sbjct: 152 KININTASKEEL-KTLDRIGDKLAERIIEYRQEHGPFKSIEEIKNVNGIGDKIFEAIKDS 210 Query: 121 LTL 123 +T+ Sbjct: 211 ITV 213 >UniRef50_C9R8F1 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Ammonifex degensii KC4 RepID=C9R8F1_AMMDK Length = 194 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 8/123 (6%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAV-------PAKASDEEG 59 + + + + A ++A+ K P ++ + S G Sbjct: 71 SRVKDALEKAGLLPTADPHALNLAQVLVDGQKIVVPPKLAEGKEGEVNNPFATRVSASSG 130 Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 ++++N A L + + G+G A+ IV YR + GPF +VEDL +VPG+G +E+ Sbjct: 131 GKINLNTADEAAL-QTLPGIGPTLARRIVEYRAKNGPFTSVEDLAKVPGIGPRRLEQLRE 189 Query: 120 VLT 122 + Sbjct: 190 YVC 192 >UniRef50_C0X8I1 Competence protein comEA n=22 Tax=Enterococcus faecalis RepID=C0X8I1_ENTFA Length = 225 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 9/130 (6%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVP-------AK 53 +K+ + L+LA + A + A+ + P A A Sbjct: 96 LKNQQRIW-DALALAGGVSEEADTAQVNYAQKVKDQMIIYVPKKGESVAQSLETLQESAP 154 Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 A + ++++N A+ EL + ++G+G KKAQ I+ +R+E GPFKTVE+LK VPG+G Sbjct: 155 AQQNQEEKINVNTATEAEL-QTISGIGAKKAQEIIRFRDEQGPFKTVEELKNVPGIGEKT 213 Query: 114 VERNLAVLTL 123 VER +LT+ Sbjct: 214 VERLKDMLTV 223 >UniRef50_Q70T35 ComEA protein n=2 Tax=Bacillus RepID=Q70T35_BACME Length = 214 Score = 126 bits (316), Expect = 2e-28, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 8/121 (6%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAK-------ASDEEGTRV 62 L+ A + L ++A E PAA + + + + V Sbjct: 94 DALAQAGGATKEADLRQLNLASKLQDEMAVYIPAAGEEIPPSSPVSLISSLGTSNDQPLV 153 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +IN A+ +EL + +NG+G KA AIVSYREE G F+TVEDL QV G+G +E+ A +T Sbjct: 154 NINTANTDEL-QTLNGIGPSKASAIVSYREENGLFQTVEDLGQVSGIGEKSLEKIKAQIT 212 Query: 123 L 123 + Sbjct: 213 V 213 >UniRef50_B9MRQ3 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MRQ3_ANATD Length = 219 Score = 126 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 11/124 (8%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS----------KAAVPAKASDEEG 59 L LA + S L + ++A+ + K P + E+ Sbjct: 96 DALVLAGGALPGSDLNSINLAEKISDGQKIYIPKIGEVQSQSSLSSSTGGTKQETISEDE 155 Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 +++IN A+ EEL + +N +G K A+ I+ YR+++GPFK++E++K V G+G + E Sbjct: 156 RKININTATKEEL-KTLNRIGDKLAERIIEYRQKHGPFKSIEEIKNVNGIGEKIFESIKD 214 Query: 120 VLTL 123 +T+ Sbjct: 215 SITV 218 >UniRef50_C2BUY4 Possible helix-hairpin-helix DNA-binding motif-containing protein n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BUY4_9ACTO Length = 363 Score = 125 bits (315), Expect = 3e-28, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 13/128 (10%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVP------------AKAS 55 + L +A + L+ ++A+P P K++ Sbjct: 237 VADALEVAGGALPEGDLSTLNLARPLTDGEMIYVPRPGETPPPSVGGNANSAPDGGTKSA 296 Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 G +V++N A L + ++G+G AQ I+ YRE G F +V+ L +V G+G +L+ Sbjct: 297 GGAGDKVNLNTADLGTL-QTLSGIGPALAQRILDYRESNGRFASVDQLDEVSGIGPALMS 355 Query: 116 RNLAVLTL 123 R + + Sbjct: 356 RLRDHVCV 363 >UniRef50_D2LT80 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LT80_BACS4 Length = 201 Score = 125 bits (315), Expect = 3e-28, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 3/124 (2%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA-QSKAAVPAKASDEEG 59 M G + + ++ A ++ A ++A+ E P+ + + S+ Sbjct: 79 MSFGER-VHDAIAQAGGFTENAEKNALNLAEKCFDEMVIYVPSQFEGEDIGVVLQSENTD 137 Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 +V IN AS EL + G+G KA+AI+ +REE G F+ +ED+ VPG+G +E Sbjct: 138 GKVRINIASEGELTE-LPGIGPAKAKAIIHFREENGHFQKIEDVVNVPGIGEKTLENIRE 196 Query: 120 VLTL 123 + + Sbjct: 197 YIRV 200 >UniRef50_Q9KD84 Late competence operon required for DNA binding and uptake n=1 Tax=Bacillus halodurans RepID=Q9KD84_BACHD Length = 210 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 M G + ++ + A +A+ + ++A E P + +E+G Sbjct: 87 MVQGER-VIDVIEKAGGMTEKAAIESVNLAVKLHDEMFIYVPEQGEAEQSLPEQQNEQGD 145 Query: 61 R--VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 V +N A+ EL +++ G+G KA AI+SYREE+G F ++E+L V G+G E+ Sbjct: 146 TQMVVLNRATEVEL-QSLPGIGPAKATAIISYREEHGAFSSLEELMNVSGIGEKSYEKLA 204 Query: 119 AVLTL 123 L L Sbjct: 205 PYLRL 209 >UniRef50_B9CKK4 Competence protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CKK4_9ACTN Length = 241 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 7/122 (5%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA------AVPAKASDEEGTR 61 + + A + ++ ++AKP K P K +V + + E + Sbjct: 120 ICDAVDAAGGPSDTADISELNLAKPIKDGDKIHVPQEGEKQVPSSENSVEPSSKNSEQSL 179 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN A+ EEL + + GVG AQAIV R++ GPF EDL +V G+G ER + Sbjct: 180 VNINVATEEELTK-LPGVGKSMAQAIVKDRDKNGPFIKAEDLMRVSGIGEKKFERMKDYV 238 Query: 122 TL 123 + Sbjct: 239 CV 240 >UniRef50_UPI0001C426BA late competence operon required for DNA binding and uptake n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C426BA Length = 206 Score = 125 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 6/121 (4%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA-----AVPAKASDEEGTRV 62 + + A + + ++A+ E P + ++S+ G ++ Sbjct: 86 VFEAIESAGGLLPDAFGDGINLAQLLVDEMVIYVPYLGEEEIPLTMGAETQSSNAAGAKI 145 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 S+N AS EL + G+G KA+AI+SYREE G F++VE+L V G+G E+ ++T Sbjct: 146 SLNKASQAEL-ETLPGIGPAKAEAILSYREEQGAFQSVEELMNVSGIGPKSFEKLQELVT 204 Query: 123 L 123 + Sbjct: 205 V 205 >UniRef50_C0ZB15 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZB15_BREBN Length = 234 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 11/126 (8%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAK----------ASDE 57 + + A + + L ++A P A PA + A V + ++ Sbjct: 109 VATAIEKAGGALPDADLVQINLAAPLADGAALVIPAKGATAPVSSSIGLVQSAASVSTTG 168 Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 + +++N A+A+EL ++ G+G +A+AIV YR + GPF++ +DLKQ+ G+G + R Sbjct: 169 ASSVINLNTATADELM-SLPGIGEARAKAIVDYRSKQGPFRSADDLKQIEGIGEKMFARI 227 Query: 118 LAVLTL 123 L + Sbjct: 228 KDRLMV 233 >UniRef50_D1VU74 Late competence protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VU74_9FIRM Length = 204 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 9/129 (6%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAA------VPAKA 54 +K+G + L+ +SLA + L + ++AK + E K A Sbjct: 78 LKNGDR-LVDAISLAGGARDDADLDSCNLAKKLSDEDKIYIKTFDESADNNFNIDSSTAK 136 Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 + +++N+AS +EL + + GVG K A I+ YRE++ FK+VEDLK V G+G+ Sbjct: 137 AISSNILINLNSASKDELMK-IPGVGPKTADKIIDYREKF-QFKSVEDLKNVDGIGDKKF 194 Query: 115 ERNLAVLTL 123 E+ L + Sbjct: 195 EKLKDYLCV 203 >UniRef50_B0G876 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0G876_9FIRM Length = 287 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 61/140 (43%), Gaps = 20/140 (14%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKA-------- 54 + + A + +A + + A+ + P+ + + + Sbjct: 149 QQDSRVFEAIEAAGGMTTTAAFSYLNQAELLKDGQQIYVPSQEEVDSGKVTSTRNASESD 208 Query: 55 -----------SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 S ++ +V++N AS EEL +NG+G +AQAI+ YREE+G F+++E+L Sbjct: 209 ETFSVQAVENVSGQDDGKVNLNTASKEELL-TLNGIGDVRAQAILKYREEHGEFRSIEEL 267 Query: 104 KQVPGMGNSLVERNLAVLTL 123 +V G+ ++ + + Sbjct: 268 MEVEGIKKGTFQKLKDQIKI 287 >UniRef50_A1R6X3 Putative comEA protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R6X3_ARTAT Length = 276 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 14/129 (10%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT------- 60 + + A S++ L ++A+ + K P P Sbjct: 146 VFQAIDAAGGAASNAELNGLNLAEVLSDGVKIHVPKVGEVPQPPPSPLAGGSGSPGATAG 205 Query: 61 ------RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 +V+IN AS EEL + VG AQ I+ +R+E+GPF +VE+L V G+G L+ Sbjct: 206 PAAGGAKVNINTASLEELG-TLPRVGPVTAQGIIDWRKEHGPFASVEELDAVDGIGPKLM 264 Query: 115 ERNLAVLTL 123 E ++T+ Sbjct: 265 ESLKELVTV 273 >UniRef50_Q65H41 ComEA n=6 Tax=Bacillus RepID=Q65H41_BACLD Length = 209 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVP-----AKAS 55 MK G + + L A + ++A P +AA ++A Sbjct: 83 MKEGDR-VHDVLKKAGGTEKKADQKQINLAAVLQDGMVVYIPFEGEEAADSFSKAGSRAD 141 Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 V+IN AS+EEL +A+ G+G KA+A++ YREE GPF TVED+ V G+G E Sbjct: 142 GASVDIVNINTASSEEL-QAIPGIGPSKAEAVIEYREENGPFHTVEDITNVSGIGEKSFE 200 Query: 116 RNLAVLTL 123 R + +T+ Sbjct: 201 RIKSAITV 208 >UniRef50_C7R5D7 Helix-hairpin-helix DNA-binding class 1 n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R5D7_JONDD Length = 261 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 6/121 (4%) Query: 7 ALLITLSLACAGMSHSAL-AAASVAKPTAVETKAEAPAAQSKAA----VPAKASDEEGTR 61 A + A G++ A A ++A+ + P P ++ E Sbjct: 138 ARVADALNAAGGLTTDAHPDAHNLARLVQDGEQILVPHKDDDPPVNVPSPTPSTAPETGP 197 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 ++IN A++E+L + + G+G AQ I+ R +GPF TV L +V G+G +++E L Sbjct: 198 ININTATSEDL-QTLPGIGPALAQRIIDDRTTHGPFPTVHSLDRVRGIGPTILENLTPHL 256 Query: 122 T 122 T Sbjct: 257 T 257 >UniRef50_B1I6D0 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Peptococcaceae RepID=B1I6D0_DESAP Length = 190 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 6/121 (4%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKA-----EAPAAQSKAAVPAKASDEEGTR 61 A ++ + + L A ++A P K P + + +R Sbjct: 69 ARVVNAVEMARPLPSADLQALNLAAPLQDGQKVLVPRVRPPDPEGVGPGSNAPAAPVDSR 128 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 ++IN A EL R + G+G A+ I+ YRE+ GPF +V+DLK V G+G +E + Sbjct: 129 ININTADRAELER-LPGIGPSLAERIIRYREQNGPFSSVDDLKNVSGIGEKRLEGLRDMA 187 Query: 122 T 122 T Sbjct: 188 T 188 >UniRef50_A7NJW3 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Roseiflexus RepID=A7NJW3_ROSCS Length = 222 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 8/124 (6%) Query: 7 ALLITLSLACAGMSH-SALAAASVAKPTAVETKAEAP------AAQSKAAVPAKASDEEG 59 A + L LA G+S + + ++A P A P + A + AS E Sbjct: 98 ARVKDLVLAAGGLSDDADIERINLAAPIADGQHVRVPWIGDGATMAATAPTESPASGESS 157 Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 + +N A+A EL A+ G+G A IV +RE GPF++V+DL +V G+G +L+ + Sbjct: 158 GLIDLNRATAAEL-DALPGIGNVLANRIVEWREREGPFQSVDDLGKVEGIGPALLAKLKP 216 Query: 120 VLTL 123 ++T+ Sbjct: 217 LVTV 220 >UniRef50_A6CQY2 Late competence protein (DNA binding and uptake) n=1 Tax=Bacillus sp. SG-1 RepID=A6CQY2_9BACI Length = 202 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 5/119 (4%) Query: 9 LITLSLACAGMSHSALA-AASVAKPTAVETKAEAPAAQSKAAVPAK---ASDEEGTRVSI 64 + L + G + A + ++A+ E P VP+ ++I Sbjct: 84 VNDLIIRAGGFTEEAHEESVNLAQKVLDEMVIYVPTEDEGGEVPSTEFLTGQGHSELLNI 143 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N AS ++ + G+G KA+AI+ YR+E GPFK VE+LK V G+G + ER +T+ Sbjct: 144 NQASEQDF-DGLPGIGPAKAKAIIEYRKENGPFKAVEELKDVTGIGEATFERLKENITV 201 >UniRef50_A1HQZ8 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQZ8_9FIRM Length = 187 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 +L ++ A + + ++A+P P A S +V++N A Sbjct: 73 VLDAVNYAGGLAAGADSTRVNLAQPLKDGMHVHVPVVVLAAGPGGSNSAGGAGKVNVNTA 132 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 SA EL + G+G AQ I+ YR+ G FK +E++K+VPG+G + + ++L Sbjct: 133 SANEL-DKLPGIGPALAQRIIDYRQSIGGFKDLEEVKKVPGIGEAKFNQIKDKISL 187 >UniRef50_C8NGS6 Competence protein ComEA n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NGS6_9LACT Length = 214 Score = 123 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 9/130 (6%) Query: 2 KHGIKALLITLSLACAGMSHSALAA-ASVAKPTAVETKAEAPAAQS-------KAAVPAK 53 + ++ + L A G + A ++A+ + P + P K Sbjct: 85 QMKVENRVKDLIEAAGGFTPLADDQKLNLAQLLEDQMVIVVPKKGEEVNSELAQTPTPQK 144 Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 + +V+IN A+ EEL + + G+G KKA+AI+ YR++ G FK E+L +V G+G L Sbjct: 145 KEVGKEGKVNINTATVEEL-KTLKGIGEKKAEAIIEYRKQNGSFKNKEELMKVRGIGKKL 203 Query: 114 VERNLAVLTL 123 E + + Sbjct: 204 YESFQERVIV 213 >UniRef50_Q4L6U1 Similar to late competence operon protein required for DNA binding and uptake ComEA n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4L6U1_STAHJ Length = 234 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 11/132 (8%) Query: 1 MKHGIKA--------LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPA--AQSKAAV 50 MK + LL L+ +S + P A E K A +K+ Sbjct: 103 MKSSDRIKDVLDKAKLLTDADLSQVNLSEKLTDQKLIYIPFANENKNPITQNDANNKSGH 162 Query: 51 PAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 + +V+IN AS EL + + GVG K + I+ YR++ F ++EDLK + G+G Sbjct: 163 SKSLNSSSTNKVNINTASEAELLK-IPGVGPAKVREIIDYRQKNNTFHSIEDLKNIKGIG 221 Query: 111 NSLVERNLAVLT 122 + ER +T Sbjct: 222 DKTFERIKEYIT 233 >UniRef50_B1HUH7 ComE operon protein 1 n=2 Tax=Bacillaceae RepID=B1HUH7_LYSSC Length = 211 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 8/126 (6%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAK-------ASDE 57 K + + LA + ++ + A+ E P + + S Sbjct: 86 DKRIFDAIQLAGGYIENADTQLVNHAQKVQDEMVIYIPIKGEQLEDISSNLLMLPLESQN 145 Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 + ++++N A AE LA + G+G KA +I+SYREE G F+T++D++ + G+G+ E+ Sbjct: 146 KSQKINVNTADAETLA-TLPGIGPSKAHSILSYREEKGRFQTIDDVRNINGIGDKTFEKI 204 Query: 118 LAVLTL 123 +T+ Sbjct: 205 KDSITV 210 >UniRef50_B6FJL2 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJL2_9CLOT Length = 191 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 3/123 (2%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAV--PAKASDEEGT 60 + + A ++ ++ + A E + PAA + + G Sbjct: 70 QQDSRVYEAIQKAGGFAENADISEINQAALLQDEEQIYVPAAGEVDHSLKEEGEAGDAGG 129 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +V++N A+ EEL + G+G KA +I+ YREE+G F+++ED+KQ+ G+ + + ++ + Sbjct: 130 KVNLNTATKEELM-TLAGIGESKADSIIKYREEHGKFQSIEDIKQIEGIKDGVFQKIKDL 188 Query: 121 LTL 123 +T+ Sbjct: 189 ITV 191 >UniRef50_A6WDK9 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Actinomycetales RepID=A6WDK9_KINRD Length = 304 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 3/115 (2%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAV--PAKASDEEGTRVSINNA 67 L+ A + + L A ++A+ + P A + G + +N A Sbjct: 190 DALTAAGGALPGADLDAVNLARVLVDGEQVLVPVPGQHPVAVPAAPGAGSRGGPLDLNAA 249 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 + EEL + GVG A IV++REE GPF+ VEDL +VPG+G +++ ++T Sbjct: 250 TPEEL-DGLPGVGEVLAGRIVAWREENGPFRDVEDLGEVPGIGPKVLDGLRDLVT 303 >UniRef50_D1CCQ9 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCQ9_THET1 Length = 206 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 63/131 (48%), Gaps = 16/131 (12%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA---------------AVPA 52 ++ + +A + + + ++A+ E + P + + + Sbjct: 76 VVDVVKMAGGFTTRADTMSVNLAQILRDEMQVIVPFKAPGSKLGSNNGQSALNPTHSSGS 135 Query: 53 KASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNS 112 A + + ++IN A+ E+L + G+G KA AI+ +R+++GPF ++EDL VPG+G S Sbjct: 136 AAQEPQVAPININTATKEQLEE-LPGIGPSKAAAIIEFRQKHGPFNSLEDLLDVPGIGPS 194 Query: 113 LVERNLAVLTL 123 +E +++ Sbjct: 195 TLENIKSMVVF 205 >UniRef50_Q03VU1 DNA uptake protein related DNA-binding protein n=2 Tax=Leuconostoc mesenteroides RepID=Q03VU1_LEUMM Length = 211 Score = 121 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 7/120 (5%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVP------AKASDEEGTRVS 63 ++ A + + + ++A+ P ++ P + + + ++ Sbjct: 93 TAIAQAGGTLEEADMQQVNLAQKLTDGQIVYVPMRGETSSAPVNNGSTSAVTTTDNEVIN 152 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +N A+ EL + ++G+G+KKA+ I++YREE+G FK++E++KQ+ G+G E +T+ Sbjct: 153 LNTATVVEL-QTLDGIGVKKAEQIIAYREEHGGFKSIEEIKQISGIGEKRFEALKDKVTV 211 >UniRef50_C1YNH2 DNA uptake protein n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YNH2_NOCDA Length = 316 Score = 121 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 2/117 (1%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA-QSKAAVPAKASDEEGTRVSINN 66 + + A + + L ++A+P + + A V G V IN Sbjct: 200 VADAVEEAGGALPDADLDLLNLARPLVDGEQVLVGVPVPAGAGVTGSGPQGAGGLVDINR 259 Query: 67 ASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A L + G+G A IVSYREE+GPF++V+DL V +G+ + +T+ Sbjct: 260 ADRA-LLETLPGIGAVIADNIVSYREEHGPFRSVDDLLNVDRIGDKTLADLQPHVTV 315 >UniRef50_B2GBB2 Competence protein n=4 Tax=Lactobacillus RepID=B2GBB2_LACF3 Length = 224 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 14/135 (10%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSK------------A 48 +K G + + ++ A + S + L ++AK + PA K Sbjct: 92 LKKGAR-VQEAIAAAGSQTSLADLNQVNLAKELQDQQVVYVPAQGEKVADATTATTGTTD 150 Query: 49 AVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 A A + +G V++N A+ E+L + ++G+G KKA I++YR+E+G FKTVEDLK V G Sbjct: 151 ATSATSQSGQGDSVNLNTATKEQL-QTIDGIGDKKADKIIAYRQEHGGFKTVEDLKNVDG 209 Query: 109 MGNSLVERNLAVLTL 123 G+ V + L + Sbjct: 210 FGDKTVAKIKDRLAV 224 >UniRef50_Q3XYU3 Competence protein ComEA helix-hairpin-helix region n=13 Tax=Enterococcus faecium RepID=Q3XYU3_ENTFC Length = 242 Score = 121 bits (304), Expect = 6e-27, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 11/126 (8%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS----------KAAVPAKASDE 57 + L A + + + + + PA + +D Sbjct: 117 VYDVLKRAGGLLEEADSDRINFSAKIEDQQVLYIPAVGEELPEHLDQLASSEGKQPTADS 176 Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 E +++IN A+ EL + + G+G KAQ I+ +REE G F+ VEDL+++ G+G VE+ Sbjct: 177 EPPKININTATPSELQQ-IPGIGSVKAQEIIRFREENGSFQKVEDLQEISGIGEKTVEKL 235 Query: 118 LAVLTL 123 +T+ Sbjct: 236 KNFVTI 241 >UniRef50_A7VCH8 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VCH8_9CLOT Length = 231 Score = 121 bits (304), Expect = 6e-27, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 2/118 (1%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE-EGTRVSIN 65 L + ++ S + PT E + + +A++ + ++ IN Sbjct: 114 GLTEDAASGVLNLAESVQDGQKLYFPTKDEMENQQGVPVDGTYTDGQANNSEQSQKIDIN 173 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A E+L ++G+G KA++I+ YR E+G F +ED+ V G+G SL ++ + + Sbjct: 174 TADKEQLM-TLSGIGEAKAESIIRYRAEHGNFAQIEDITNVDGIGESLFQKIKEYIYV 230 >UniRef50_C4V2X7 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2X7_9FIRM Length = 188 Score = 121 bits (304), Expect = 7e-27, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 4/122 (3%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA---QSKAAVPAKASDEEGTR 61 K + ++ A + + + ++A + P + + + + Sbjct: 68 DKRVADAVNAAGGVIETADVDHINMAAHLEDGMQIRVPVRLHDAEEKGAATSSGRQADGK 127 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 +++N A+ +EL + + G+G + IV YRE G F+T++D+K+V G+G + E+ + Sbjct: 128 INLNTATEKEL-QELPGIGPAMSARIVEYRESNGAFQTIDDIKKVRGIGAAKFEKLKDRV 186 Query: 122 TL 123 TL Sbjct: 187 TL 188 >UniRef50_A4EC57 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EC57_9ACTN Length = 244 Score = 121 bits (303), Expect = 8e-27, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 12/127 (9%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKAS-----------D 56 + + A + + + A K P + A A+A Sbjct: 119 VAQAIDAAGGLAPEADVTGLNRASKVVDGQKIHVPTVGEQQASIAEAGVDGGASASLGVS 178 Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 V+IN ASA EL + ++G+G AQ+I+ R + G F +V+DL +V G+G + + Sbjct: 179 GATGLVNINTASAAEL-QTLSGIGPSMAQSIIDERTKNGAFASVDDLMRVSGIGEKKLAK 237 Query: 117 NLAVLTL 123 + + Sbjct: 238 IKDCICV 244 >UniRef50_Q2RKY9 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKY9_MOOTA Length = 224 Score = 121 bits (303), Expect = 9e-27, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 18/134 (13%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA-----------------A 49 A + + + A ++A P + + P +A Sbjct: 91 ARVNEAIHLAGVLPEANPNALNLAAPLSDGQQVIVPRQGEEARVNAPAGAATGPGAAPGN 150 Query: 50 VPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 +S G +V+IN A EL ++ G+G AQ I+ YR + GPF+T+EDL+ V G+ Sbjct: 151 PAGSSSSRTGGKVNINTAGLAEL-DSLPGIGPTLAQRILDYRTQKGPFRTIEDLQNVSGI 209 Query: 110 GNSLVERNLAVLTL 123 G ++T+ Sbjct: 210 GAKKFADLKDLITV 223 >UniRef50_Q71ZI6 DNA-binding protein, ComEA family n=18 Tax=Listeria RepID=Q71ZI6_LISMF Length = 211 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 6/127 (4%) Query: 2 KHGIKALLITLSLACAGMS-HSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEE-- 58 K + A + + G++ + + ++A+ E + A+ EE Sbjct: 85 KLPMDARVQDVVKIAGGLTAEADCSKLNLAEKLKDEMSIYVYKKGEEGPATQGANTEEAS 144 Query: 59 --GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 ++++N+A+ ++L + + G+G KA AI+ YRE+ G F+T+EDLK V G+G VE+ Sbjct: 145 TGSAKINLNSATKDDLQQ-VPGIGESKATAIIEYREKEGLFQTIEDLKNVSGIGEKTVEK 203 Query: 117 NLAVLTL 123 L + Sbjct: 204 LKEYLDV 210 >UniRef50_A5N6K8 Predicted DNA-binding competence protein n=14 Tax=Clostridium RepID=A5N6K8_CLOK5 Length = 200 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 6/127 (4%) Query: 2 KHGIKALLITLSLACAGMSHSALA-AASVAKPTAVETKAEAPAAQS----KAAVPAKASD 56 K + + L AC G ++ A + ++AK E + + Sbjct: 74 KLKQDSRVQDLVKACGGFTNEANSYKLNLAKKLKDEDYIYVDKKSDNENLQLQNGLQGET 133 Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 E +++IN A+ EEL + + G+G AQ I+ YRE+ G F ++EDLK V +G+ +E+ Sbjct: 134 SENAKININTATKEEL-KTIPGIGDVTAQKIMDYREQNGGFSSIEDLKNVDRIGDKTLEK 192 Query: 117 NLAVLTL 123 + + Sbjct: 193 IKDKVDI 199 >UniRef50_Q8EPV5 Late competence protein (DNA binding and uptake) n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPV5_OCEIH Length = 198 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 1/121 (0%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRV 62 + + LA ++ + ++A+ E P + + ++ ++ Sbjct: 78 EQDDRIHDVIELAGGFSKNADQSQVNLAQLVQDEMIIAVPEQGEQETNISSGINDSNDKI 137 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 IN AS +E+ + + G+G KA+ I YREE G F+ +EDL + G+G +E + Sbjct: 138 RINYASVQEIEQ-LPGIGPSKAETIFQYREENGLFRELEDLLNISGIGEKTIESLRDYIQ 196 Query: 123 L 123 + Sbjct: 197 I 197 >UniRef50_C9CQC8 DNA-binding protein n=3 Tax=Enterococcus casseliflavus RepID=C9CQC8_ENTCA Length = 213 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 7/128 (5%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA-----AVPAKAS 55 +K G + + + A + A ++A+ + P + +A A S Sbjct: 86 LKSGAR-MYELIEQAGGLTEEALETAINLAQVLQDQQMVIVPHKEDQAFTEMNASGVGGS 144 Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 T++++N A+A++L + + GVG KKA+AI++YREEYG FK ++DLK++ G+G E Sbjct: 145 QTAVTQINLNQANAQQL-QELPGVGAKKAEAIIAYREEYGFFKQIDDLKKITGIGEKTFE 203 Query: 116 RNLAVLTL 123 ++T+ Sbjct: 204 SLKEMITV 211 >UniRef50_Q47RQ3 Helix-hairpin-helix DNA-binding, class 1 n=1 Tax=Thermobifida fusca YX RepID=Q47RQ3_THEFY Length = 355 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSK--AAVPAKASDEEGTRVSIN 65 + L A + L ++A+P + S R+ +N Sbjct: 235 VADALDAAGGPRPDADLGFLNLARPLVDGEQILVGVTPSPMAGEGEGPGLPAGDGRIDLN 294 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+A++L + + G+G AQ I+ +R G F +VE L V G+G+ ++ + Sbjct: 295 TATADQL-QTLPGIGPVLAQRIIDHRASIGGFTSVEQLHDVTGIGDRRFAELRDLVYV 351 >UniRef50_A8Z4C9 Possible competence protein comEA n=52 Tax=Staphylococcus aureus RepID=A8Z4C9_STAAT Length = 228 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 9/129 (6%) Query: 2 KHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVP--------AK 53 K K ++ L + + ++ ++++ + P K P K Sbjct: 100 KMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEK 159 Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 + T+V++N AS EL ++ GVG KA AIV YR + G F+ ++DLK+V G G+ Sbjct: 160 NGNTNNTKVNLNTASVSELM-SVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKT 218 Query: 114 VERNLAVLT 122 ++ + T Sbjct: 219 FDKLKSYFT 227 >UniRef50_C9KN34 Competence protein n=3 Tax=Veillonellaceae RepID=C9KN34_9FIRM Length = 224 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 15/128 (11%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA--------------QSKAAVPAKAS 55 ++ + + ++A+ + P A + Sbjct: 98 DAVNACGGLLPTADAEKVNMAQVLKDGQQVRVPEKAVPETTAAAKSGSVNPAAKSGTSSK 157 Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 V+IN ASAEEL + G+G AQ I+ +RE G F +ED+K+V G+G + E Sbjct: 158 AAPSGPVNINTASAEEL-DTLPGIGPAMAQRIIEFRETEGAFTAIEDIKKVKGIGEAKFE 216 Query: 116 RNLAVLTL 123 + + + Sbjct: 217 KMKDKICI 224 >UniRef50_D1BEI9 DNA uptake protein n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BEI9_SANKS Length = 301 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 11/126 (8%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAA----------VPAKASDE 57 ++ + A + A+ ++A+P + PA + + Sbjct: 175 VVDAIDAAGGLTPDADSASVNLARPAVDGEQVYVPAPGEEVPVAAEAAAGAASQHGGAPA 234 Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 G V +N A A+EL + + GVG AQ I+ +R +G F +V+ L+ V G+G ++ER Sbjct: 235 VGGLVDLNRAGADEL-QTLPGVGPALAQRILDWRTTHGAFGSVDQLQDVSGIGPVVMERL 293 Query: 118 LAVLTL 123 ++++ Sbjct: 294 RELVSV 299 >UniRef50_Q6M3A1 Secreted DNA uptake protein or related DNA-binding protein n=2 Tax=Corynebacterium RepID=Q6M3A1_CORGL Length = 217 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS-KAAVPAKASDEEGTRVSIN 65 + + + + L A ++A+ T+ A + A+ +S+N Sbjct: 101 SRVADALAIAGALPDADLTALNLAQLLVDGTQIHVLAIGEVQPISVDAAATSASGLISLN 160 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 A+ +L + GVG K AQAI+ +RE G F TVEDL QV G+G S E+ +++ Sbjct: 161 TATVADLV-TLPGVGEKTAQAIIDFRESNGGFSTVEDLLQVKGIGPSKFEQISGLVS 216 >UniRef50_Q0AWK6 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWK6_SYNWW Length = 207 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 14/135 (10%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQ------------SKA 48 +K + + + L +A+P P S+ Sbjct: 74 LKENDR--VYQAVEMAGPEDKADLRLIDMARPLVDGETIVVPGEGELTAEMAGVQGASQL 131 Query: 49 AVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 V + AS +V+IN A A ELA +NG+G +Q IV YRE G F+ +ED+K V G Sbjct: 132 PVSSPASPVGSGKVNINKAPASELADRLNGIGPALSQRIVDYRESNGAFQKIEDIKNVSG 191 Query: 109 MGNSLVERNLAVLTL 123 +G E +T+ Sbjct: 192 IGEKKFEAIKDHITV 206 >UniRef50_C5C480 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C480_BEUC1 Length = 290 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 9/122 (7%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD--------EEGTR 61 L A + + LAA ++A+ + PA A + +G Sbjct: 170 DALEAAGGALPEADLAALNLARVLVDGEQVYVPAPGEAPPAGAGGAPGAPAAEGGSDGGP 229 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V++N A L + G+G AQ IV +R G F VE+L +V G+G + +ER ++ Sbjct: 230 VNLNTADLAAL-DTLPGIGPALAQRIVEWRTANGSFVDVEELTEVSGIGPATLERLRPLV 288 Query: 122 TL 123 T+ Sbjct: 289 TV 290 >UniRef50_C9LCS3 Competence protein CelA n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LCS3_RUMHA Length = 201 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 10/131 (7%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETK--------AEAPAAQSKAAVPA 52 +K G + + + A + ++ + A + K + Q + + Sbjct: 72 LKQGSR-VFEAVQEAGGFLENADTTGINQASVLSDGEKLQIYTIEEVQQMEVQPEMFSGS 130 Query: 53 KASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNS 112 + E G +++IN A EL + + GVG KKAQ+I+ YRE G F+ +E L++VPG+ Sbjct: 131 SENTESGGKININTADLTEL-QEIPGVGEKKAQSIMEYREACGGFQNIEQLQEVPGIKGK 189 Query: 113 LVERNLAVLTL 123 ++ +T+ Sbjct: 190 TFDKVKDYITV 200 >UniRef50_Q65RQ5 ComEA protein n=2 Tax=Pasteurellaceae RepID=Q65RQ5_MANSM Length = 161 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 7/123 (5%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 MK ++ L++ LA + + A A+ P + ET+A K + AK +D G Sbjct: 46 MKLSVRKFLLS-CLAAGSLLSAGTAFAADKVPASAETQAI------KTSETAKPADNIGN 98 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 V+IN A+AEE+ + + G+G KKA+AI+ YRE++G F VE L ++ G+G + +++N Sbjct: 99 TVNINTATAEEIKQTLIGIGAKKAEAIIQYREKHGNFTNVEQLLEIQGIGEATLDKNKDR 158 Query: 121 LTL 123 + L Sbjct: 159 IKL 161 >UniRef50_A5KJM8 Putative uncharacterized protein n=2 Tax=Ruminococcus RepID=A5KJM8_9FIRM Length = 225 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 4/124 (3%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAV---PAKASDEEG 59 + ++ A ++A A + A+ + P+ + Sbjct: 103 EQDSRVFEAIAKAGGLTENAAAEAVNQARVVVDGEQIYVPSLDEVKGAGVVSEVTERTDD 162 Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 +++IN A EEL + GVG KAQ+I++YREE+G F+++E+L Q+ G+ + + Sbjct: 163 GKININTAEKEELM-TLTGVGEAKAQSIIAYREEHGGFQSIEELMQIEGIKEGVFNKIKE 221 Query: 120 VLTL 123 +T+ Sbjct: 222 DITI 225 >UniRef50_A5ZYC6 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZYC6_9FIRM Length = 228 Score = 118 bits (297), Expect = 4e-26, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%) Query: 4 GIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS----------KAAVPAK 53 G + + A + +A +A + A+P + + P + + A P Sbjct: 99 GSSRVFQAIEAAGGFLPEAAASAVNQAQPVSDGQQIYVPTQEEAEEGALPAAIQPADPGS 158 Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 + + V+IN A A L ++++G+G KAQAI++YREE+G F ++E++ QVPG+ S Sbjct: 159 ETTDANGVVNINTADASAL-KSLSGIGDAKAQAILTYREEHGFFSSIEEIMQVPGIKEST 217 Query: 114 VERNLAVLTL 123 + + Sbjct: 218 FSAIKDKIAV 227 >UniRef50_C1TL78 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL78_9BACT Length = 229 Score = 118 bits (297), Expect = 4e-26, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 22/137 (16%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAP---------------------AAQS 46 + + A S + A ++A P A P A S Sbjct: 93 VYHLVESAGGMTSGADDVAVNLAAPLADGAHVHVPLRSKAARASVDTGRPGSSSSVTALS 152 Query: 47 KAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQV 106 A ++ E V++N+AS+EEL + G+G K A AI+SYRE+ GPF++V++L +V Sbjct: 153 YAGTSTGSASERSGAVNLNSASSEEL-ETLPGIGPKTAAAILSYREKIGPFRSVDELTKV 211 Query: 107 PGMGNSLVERNLAVLTL 123 G+G +E ++T+ Sbjct: 212 KGIGPKKLETVRTLVTV 228 >UniRef50_C2E8F5 Competence protein ComEA n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E8F5_9LACO Length = 250 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 35/154 (22%) Query: 4 GIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAP--------------------- 42 K + LSLA + + + A + P Sbjct: 98 NGKRVGDVLSLAGGPLEGADTTQINFAHKLEDQMVIYIPKVGESSPIENTVGVSGSDDKS 157 Query: 43 -------------AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVS 89 +AQ++ ++ ++++N AS E+L + + G+G KKA I++ Sbjct: 158 DQNEANSAAEKISSAQTQTDSTSQGQGGNDGKINLNTASKEQLMQ-LTGIGDKKADEIIA 216 Query: 90 YREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 YR++ G FKT++DLK V G+G+ E+ + +T+ Sbjct: 217 YRQQNGNFKTIDDLKNVSGIGDKTFEKISSQITV 250 >UniRef50_D1B5R3 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5R3_THEAS Length = 235 Score = 118 bits (296), Expect = 5e-26, Method: Composition-based stats. Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 28/143 (19%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEE--------- 58 + + + A + L A ++A P + P A + Sbjct: 92 VYVAVEAAGGPAVRADLEAINMASPLSDGDHVRVPFKGEPAGAAPPPTASSRMSSHSAPP 151 Query: 59 ------------------GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTV 100 +V++N A EEL +++ GVG K AQAI+ YR GPF+ V Sbjct: 152 PPQGGVRSPSSPVPSPAPAGKVNVNRAGLEEL-KSLPGVGDKTAQAIIDYRTANGPFRDV 210 Query: 101 EDLKQVPGMGNSLVERNLAVLTL 123 +DL +V G+G +E+ ++ + Sbjct: 211 KDLMKVKGIGPKKLEKMAPLVEV 233 >UniRef50_C7MPR3 DNA uptake protein n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MPR3_SACVD Length = 352 Score = 118 bits (296), Expect = 5e-26, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 7/122 (5%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKAS------DEEGTR 61 + + LA S + L ++A+ + + A + + Sbjct: 231 VADVIELAGGADSDTDLLTVNLARRVSDGEQIYVGVTPPPGAEHPPVAAVPADPSTSAAK 290 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V +N A +L + + GVG A I+ +RE +G F +V L++V G+G R ++ Sbjct: 291 VDLNTADR-QLLQTLPGVGEATASRILEWRERHGRFTSVSQLREVDGIGEKRFARLRDLV 349 Query: 122 TL 123 ++ Sbjct: 350 SV 351 >UniRef50_C7N574 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N574_SLAHD Length = 243 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 15/130 (11%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAP--------------AAQSKAAVPAK 53 + +S A +A A + A+ A + P AA +A+ A Sbjct: 115 VCDAVSAASGFSDQAAQDAINQARVLADGEQVYVPTADDVESGAFAGPAAASEQASTGAG 174 Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 + +V+IN A A EL + ++G+G A+AIV RE GPF +VEDL++V G+G Sbjct: 175 EAASPSGKVNINTADASELQQ-LSGIGPATAEAIVKDREANGPFASVEDLQRVSGIGEKK 233 Query: 114 VERNLAVLTL 123 + + + Sbjct: 234 YAKIADDICV 243 >UniRef50_C4FWP5 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWP5_9FIRM Length = 222 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 15/128 (11%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS--------------KAAVPAK 53 + L +A +A A + A+ + P + A Sbjct: 93 VFDLLEMAGGLTEEAAERALNQAQLLVDQQSLYVPTIEEWQAESQGPQANGTGSQAAIVS 152 Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 + +V+IN A +L + G+G KKAQAI+ YR G F ++EDL +V G+G L Sbjct: 153 SPSASSGKVNINQADLSQL-ETLPGIGAKKAQAIIDYRTANGSFHSLEDLGKVKGIGPKL 211 Query: 114 VERNLAVL 121 +++ ++ Sbjct: 212 LDKLRDLV 219 >UniRef50_A8VU71 HAD superfamily (Subfamily IIIA) phosphatase, TIGR01668 n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VU71_9BACI Length = 226 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 12/133 (9%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKAS----- 55 M+ + +L + A +A ++A + E P + AV Sbjct: 90 MQSDDR-VLDAVMEAGGFTDTAAHDGINLASRLSDEMVVYVPYEMAGEAVGVSPENMMET 148 Query: 56 -----DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 +E+ V +N + L + G+G KA AI+ YR+E+GPF E+L QVPG+G Sbjct: 149 AWATMEEDDGLVCLNGSDHAAL-ETLPGIGPAKAAAIIQYRDEHGPFTNEEELVQVPGIG 207 Query: 111 NSLVERNLAVLTL 123 + E +++ + Sbjct: 208 DKTFETLRSLIKV 220 >UniRef50_C0CK25 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CK25_9FIRM Length = 242 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 11/126 (8%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVP----------AKASDE 57 L + +A +AL + A+ + + + P ++ E Sbjct: 117 LYEAVEMAGGYTPEAALGVLNQAQVLTDGQQIRVLTQEELQSQPELVGQTESAGSEQPGE 176 Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 +V+IN A A+ L +NG+G +AQAI++YREE G F++VE +K+V G+G+ + R Sbjct: 177 SDGKVNINTADAQTLM-TLNGIGESRAQAILTYREENGLFQSVEQIKEVSGIGDGIFSRI 235 Query: 118 LAVLTL 123 + + Sbjct: 236 KDEIVI 241 >UniRef50_P39694 ComE operon protein 1 n=3 Tax=Bacillus RepID=COMEA_BACSU Length = 205 Score = 118 bits (295), Expect = 7e-26, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE--- 57 M+ G + + + A + A ++A+ T P + AV Sbjct: 78 MRTGDR-VSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQS 136 Query: 58 ---EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 +G V+IN A+ EEL + ++GVG KA+AI++YREE G F+T+ED+ +V G+G Sbjct: 137 DGGKGALVNINTATLEEL-QGISGVGPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSF 195 Query: 115 ERNLAVLTL 123 E+ + +T+ Sbjct: 196 EKIKSSITV 204 >UniRef50_B0VFU5 Putative ComEA protein-related protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFU5_9BACT Length = 215 Score = 118 bits (295), Expect = 7e-26, Method: Composition-based stats. Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Query: 42 PAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 P++ SK + + V+IN A+ EEL ++G+G KAQAI+ +REE G F+T+E Sbjct: 134 PSSTSKTKSATISKANNTSPVNINTANLEELC-TLSGIGEVKAQAIIDWREENGSFETIE 192 Query: 102 DLKQVPGMGNSLVERNLAVLTL 123 D+ +V G+G E+N LT+ Sbjct: 193 DIMKVKGIGPKTFEKNKDRLTV 214 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 +++ ++ I A+ EEL ++G+G K+A+ I++YRE PF +V + + G+G Sbjct: 55 KEDKPLQLDIRIATFEELL-CLSGIGEKRAKDIIAYRETN-PFTSVNQIMNIKGIGAKTY 112 Query: 115 ERNLAVLTL 123 + L L + Sbjct: 113 AKILPDLLV 121 >UniRef50_Q5LYL1 Late competence protein required for DNA binding and uptake n=4 Tax=Streptococcus RepID=Q5LYL1_STRT1 Length = 231 Score = 117 bits (294), Expect = 9e-26, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 65/134 (48%), Gaps = 13/134 (9%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS-----------KAA 49 +K G + + + A + + ++A + E + + Sbjct: 99 LKAGAR-VTDVIQEAGGITEDADAKSVNLAASLSDEEVIYVANKDENVSVLDQTGTGQVS 157 Query: 50 VPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 + + ++++N A++E+L + ++G+G K+A+ I++YRE +G F++V+DLK V G+ Sbjct: 158 DKGGQAVSKDGKINLNTATSEQL-QTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGI 216 Query: 110 GNSLVERNLAVLTL 123 G+ +++ L + Sbjct: 217 GDKTLDKIRESLYV 230 >UniRef50_Q5WHH4 Late competence protein ComEA n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WHH4_BACSK Length = 204 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 6/121 (4%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAK-----ASDEEGTRV 62 L + A + A ++A E P + + Sbjct: 84 LFEAIEKAGGFTDSANREAVNLALRLEDEMVVYVPKEGEDEGAGPVLAVEMNETDHEDTI 143 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +IN A+ +L + G+G KA AI+ YREE G F TVE+L V G+G E ++ Sbjct: 144 NINEATEADLL-TLQGIGPSKAAAIIGYREENGSFATVEELMNVSGIGEKTFEALEPLIR 202 Query: 123 L 123 + Sbjct: 203 V 203 >UniRef50_A4AGG3 Competence protein ComEA helix-hairpin-helix region n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AGG3_9ACTN Length = 196 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 6/118 (5%) Query: 7 ALLITLSLACAGMSHSAL-AAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSIN 65 + +I A G + SA ++A+ + P +K+A + +RV++N Sbjct: 84 SRVIDAIAAAGGFTESANHDELNLARLLTDGEQFSVPEVGAKSA----EAAVSDSRVNLN 139 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A A L + +G A+ I+++RE GPF T++DL+ V G+G++ E ++ + Sbjct: 140 TADAAAL-DTLPRIGPAMAKRILAWRESNGPFVTIDDLRNVAGIGDATFEGLRELIRV 196 >UniRef50_Q67SA3 Putative DNA-binding protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67SA3_SYMTH Length = 230 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 23/135 (17%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEA----------------------PAAQSK 47 + A + + ++A P K P + Sbjct: 96 DAILAAGGPLPDAVPGVLNLAAPLVDGAKIYVYREDELQPQAPPPPKAQGATYQPVTSTL 155 Query: 48 AAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVP 107 A A T V+IN A EL + G+G A+AI++YR E+GPF++V+DL V Sbjct: 156 GGSGAAAGSGGTTLVNINTAGQAEL-ETVPGIGPALARAIITYRTEHGPFQSVDDLINVS 214 Query: 108 GMGNSLVERNLAVLT 122 G+G+ +E+ +T Sbjct: 215 GIGSKTLEKIRPYVT 229 >UniRef50_Q5HNV7 ComE operon protein 1, putative n=6 Tax=Staphylococcus RepID=Q5HNV7_STAEQ Length = 224 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 2/121 (1%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRV 62 +L L+ +S + + P E + + QS + + Sbjct: 106 LNKAEVLKDADLSQLNLSEKLVDQKLIYVPKKGENSMKINSQQSTLNSSDVKINTNQ-PL 164 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 ++N+A+ E+L + + G+G KA+ I++YRE+ F +++DL ++ G G E+ T Sbjct: 165 NLNSATEEQL-KNIPGIGPSKAKEILNYREQNHGFNSIDDLMKIKGFGKKTFEKLKEHFT 223 Query: 123 L 123 + Sbjct: 224 I 224 >UniRef50_B0NE87 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NE87_EUBSP Length = 202 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 5/120 (4%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSK----AAVPAKASDEEGTRVS 63 L + A +A + + A+ + P+ + + + ++ +++ Sbjct: 84 LYEAIEAAGGLKEGAAAESLNQAQEAKDGQQIYVPSIEESLKEGVSGEGEPAEASDGKIN 143 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +N A+ E+L + G+G KA AI+ YREE G F+++E+L +V G+ + + + + Sbjct: 144 LNTAAKEQLM-TLTGIGETKAAAIIRYREENGGFQSIEELMEVEGIKEGVFNKIKDQIKI 202 >UniRef50_D2SCU5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SCU5_9ACTO Length = 278 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 4/119 (3%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKA---SDEEGTRVSI 64 + ++ A + + A+ ++A + + + AA + V + Sbjct: 161 VADAVTAAGGLLPDADPASINLAAVVSDGQQVAVGVPGAAAAGGTVGGTDATSGAGPVDL 220 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N A+A +L A+ G+G AQ IV +RE GPF+TVE L VPG+G + ++T+ Sbjct: 221 NAATAPDL-DALPGIGPVLAQRIVEHRERNGPFRTVEQLDDVPGIGPTTYAELAELVTV 278 >UniRef50_B5Y881 ComEA protein n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y881_COPPD Length = 237 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 22/134 (16%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT---------- 60 + + L ++A A E P + V T Sbjct: 104 DVISMAGVKGDADLTRLNLASHVADEMMVYVPTKAEQQNVDGSQGIPSSTAQNSGGVVIG 163 Query: 61 -----------RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 ++IN A ++L A+ G+G A IV YR+ GPFK++E++K V G+ Sbjct: 164 SSESAGSSKSSLININTADEKQL-DALPGIGPTLAARIVEYRQANGPFKSIEEVKNVSGI 222 Query: 110 GNSLVERNLAVLTL 123 G ++T+ Sbjct: 223 GEKRFADIKDLITV 236 >UniRef50_A7GT21 Competence protein ComEA helix-hairpin-helix repeat protein n=88 Tax=Bacillus RepID=A7GT21_BACCN Length = 200 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 2/112 (1%) Query: 12 LSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEE 71 + A + + + ++A+ + P + ++ ++SIN AS E+ Sbjct: 90 IEKAGGFLPEADVTQVNLAQIMQDQMLLYIPKKGERLH-ETTLPVQQSGKISINQASKEQ 148 Query: 72 LARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 L + G+G +KA+AI+ YREE+G F+ +EDL ++ G+G +E+ + + Sbjct: 149 L-ENITGIGPRKAEAIIKYREEHGAFQKIEDLLEIDGIGEKSLEKMKDQIMI 199 >UniRef50_D1BUZ0 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUZ0_XYLCX Length = 320 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 7/122 (5%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVP------AKASDEEGTR 61 + ++ A + L+A ++A+P + PA A P + R Sbjct: 200 VFDAVAAAGGATEGAELSAINLARPVVDGEQLRVPAPGEVVAAPVAPDGVPATGRSDDGR 259 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V++N A L + G+G A IV++R + GPF +V++L +V G+G +++ + ++ Sbjct: 260 VNLNTADEATL-ETLPGIGPALAARIVAWRTDNGPFASVDELDEVSGIGPAMLAKVRDLV 318 Query: 122 TL 123 T+ Sbjct: 319 TV 320 >UniRef50_C7GZM9 Competence protein CelA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZM9_9FIRM Length = 211 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 8/128 (6%) Query: 3 HGIKALLITLSLACAGMSH-SALAAASVAKPTAVETKAEAPAAQSKAAVPAKA------S 55 K+ + A G++ + ++ + A K P + + + + + Sbjct: 85 LSKKSRIEDAIKAAGGLTAKADISKINRAAFVKDGDKIYIPKSGEETSGSENSRSDGRDN 144 Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 + +G +V++N A A +L + +NG+G A+ I+ YRE G FK VEDL +VPG+G V+ Sbjct: 145 ERDGGKVNLNTADATKL-QTVNGIGPATAEKIIDYRENNGNFKKVEDLVKVPGIGPKTVQ 203 Query: 116 RNLAVLTL 123 + + T+ Sbjct: 204 KLIKEFTV 211 >UniRef50_C5VAZ4 Competence protein, ComEA helix-hairpin-helix repeat domain n=2 Tax=Corynebacterium matruchotii RepID=C5VAZ4_9CORY Length = 244 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%) Query: 16 CAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARA 75 ++ + P P + VP++ + ++S+N A+ +EL Sbjct: 138 GLNLAQKLADGQQIVVPNIDAGPVPPPPSGISGGVPSQGGTQVTGKISLNTATVQELT-T 196 Query: 76 MNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + GVG K AQAI++YR+ +G F ++++L+QV G+G + +TL Sbjct: 197 LTGVGEKTAQAIIAYRDAHGGFTSIDELQQVKGIGPAKFATISPEVTL 244 >UniRef50_C1PB54 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Bacillus RepID=C1PB54_BACCO Length = 238 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 19/134 (14%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD----------- 56 + + A ++ ++A+ E E P KAA A+ Sbjct: 105 VYDLIQEAGGFNENADRNQVNLAQKVKDEMVIEVPKKGEKAASAQTATAAAGISAPASSS 164 Query: 57 -------EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 E +V+IN A +L + G+G KA AI+ YRE+ GPF+ EDLK V G+ Sbjct: 165 SGTAASGEAAAQVNINTADQTQL-ETLPGIGPSKAAAIIEYREKNGPFQKPEDLKNVSGI 223 Query: 110 GNSLVERNLAVLTL 123 G+ + +TL Sbjct: 224 GDQTFAKIENSITL 237 >UniRef50_C5EH62 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EH62_9FIRM Length = 245 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 8/123 (6%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR------ 61 + + A M A ++A+ K E P+ A+ Sbjct: 124 VYEAVEAAGGIMDGGAADYLNLAETLRDGMKLEVPSESQVKEWEAQGIKPAADPEAKTRS 183 Query: 62 -VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 V++N A+ EEL ++ G+G +A+ I+ YRE YG F+++ED+ V G+ ++ E+ Sbjct: 184 MVNLNTATREELM-SLRGIGESRAEDIIRYRETYGGFQSIEDIMNVSGIKDAAFEKIKDS 242 Query: 121 LTL 123 +T+ Sbjct: 243 ITV 245 >UniRef50_C2D6C0 Possible competence protein ComEA family protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6C0_9ACTN Length = 277 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 21/134 (15%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT--------- 60 ++ A S + +AA ++A K P A + ++ Sbjct: 145 DSIDRAGGLTSDADVAALNLASELHDGEKVHIPRVGEDATLTQDSTGAASGDSYRQDRGA 204 Query: 61 -----------RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 +S+N AS EL + GVG A I++ R E+GPFK VEDLK+V G+ Sbjct: 205 STTRKGHAPTRPISLNKASKNELLE-LPGVGPAMADRIIADRREHGPFKHVEDLKRVKGI 263 Query: 110 GNSLVERNLAVLTL 123 G+ E+ L + Sbjct: 264 GSKKFEKVRKYLHV 277 >UniRef50_C5QSY0 Competence protein comEA n=1 Tax=Staphylococcus epidermidis M23864:W1 RepID=C5QSY0_STAEP Length = 228 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 8/122 (6%) Query: 9 LITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA-------AVPAKASDEEGTR 61 +I ++ ++ ++++ + P + + E + Sbjct: 108 VIDALNKAKLSKNADVSQINLSEKLIDQKLIYVPTKGEPPHTIRNNNSPITSNQNSENKQ 167 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V++NNA+ EL + + G+G KA+ I++YRE+ G F ++DLK++ G G E+ Sbjct: 168 VNLNNATESEL-KGVPGIGPTKAKEIINYREQNGRFDKIDDLKKIKGFGEKTFEKLKEYF 226 Query: 122 TL 123 T+ Sbjct: 227 TI 228 >UniRef50_Q03QM7 DNA uptake protein related DNA-binding protein n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03QM7_LACBA Length = 231 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 16/136 (11%) Query: 2 KHGIKALLITLSLACAGMSH-SALAAASVAKPTAVETKAEAPAAQSK------------- 47 + + A G+ + ++A + + P K Sbjct: 96 QFSSTMRIADALKAAGGLVERADRQRINLAMRLTDQQQVYIPLKGEKVSETAGSVPSGST 155 Query: 48 -AAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQV 106 ++A+ V++N A+ EL + + G+G KKAQ IV YR ++G F++V+DL QV Sbjct: 156 ATTASSQATGTPVAVVNLNTATVTELQQ-LTGIGEKKAQKIVDYRTDHGHFQSVKDLAQV 214 Query: 107 PGMGNSLVERNLAVLT 122 PG G V LT Sbjct: 215 PGFGEKTVANLQDQLT 230 >UniRef50_C2AU83 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AU83_TSUPA Length = 277 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 18/133 (13%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKAS------------ 55 + L+ A ++ + A+ ++A+ + A K+ V ++S Sbjct: 146 VADALTAARGTLADADTASLNLAQLLRDGDQVVVGVADGKSPVKLRSSVVPAGTGSAAGG 205 Query: 56 -----DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMG 110 +V+IN ASA EL R + GVG A AI++YRE+ GPFKTV+DL +V G+G Sbjct: 206 ASASGPAPSAQVNINTASAAELDR-LPGVGPATAAAIIAYREQNGPFKTVDDLGKVAGIG 264 Query: 111 NSLVERNLAVLTL 123 ++ + + + T+ Sbjct: 265 DAKLAKITPMATV 277 >UniRef50_A9B5P5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5P5_HERA2 Length = 228 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 16/132 (12%) Query: 7 ALLITLSLACAGM-SHSALAAASVAKPTAVETKAEAPAAQSKAAVP-------------- 51 A + L A G+ S + A ++A P A Sbjct: 97 ARIDDLVQAAGGLDSEADSQALNLAAYLQDAQHVHVPVVGETPAPTTQPTAEPQAIAVAA 156 Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 AS + T ++IN ASA EL ++ +G AQ IV+YREE GPF T+E L++V G+G Sbjct: 157 PTASARQPTLININTASAAEL-ESLPKIGQAIAQRIVAYREENGPFTTIEALQEVKGIGA 215 Query: 112 SLVERNLAVLTL 123 S +T+ Sbjct: 216 STFAEIEPFITI 227 >UniRef50_C8PAT3 Competence protein CelA n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PAT3_9LACO Length = 213 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 7/128 (5%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE--- 57 +K G + L + A S + L A + A+ + + P K A A ++ Sbjct: 88 LKSGSR-LNDLIKKAGGLRSDAQLRAINRARILKDQDQIYIPDKTEKVADTAAEANNVNS 146 Query: 58 --EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 + +++IN A+A+EL + ++G+G K+A+ I+ RE G FK+++DLKQV G+G +E Sbjct: 147 DDKQDKININTATAQEL-QKLSGIGQKRAEQIIECRERIGGFKSIDDLKQVSGIGVKTIE 205 Query: 116 RNLAVLTL 123 + L L Sbjct: 206 KLKPHLVL 213 >UniRef50_UPI000185081A ComE operon protein 1 n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI000185081A Length = 199 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR--VSIN 65 +L +++A + ++A+ E P + EE +++N Sbjct: 83 VLDAITVAGGLTETADERVINLAQKIQDEMVIYIPEKGEVEFQYGVSQTEEKRELFINLN 142 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ EEL + G+G KA+AI++YR+E F ++E+++ VPG+G E +T+ Sbjct: 143 TATKEEL-ETLPGIGPAKAEAIITYRDET-LFSSIEEIENVPGIGTKTFESLKDYITV 198 >UniRef50_C6RS77 Competence protein, ComEA helix-hairpin-helix repeat domain n=2 Tax=Acinetobacter radioresistens RepID=C6RS77_ACIRA Length = 138 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 3/122 (2%) Query: 5 IKALLITLSLACAGMSHS---ALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR 61 + LL L LA AG + + + S A+ + Sbjct: 17 MLGLLACLWLASAGQVQAQQFDDSYLKWKNQQLDHDRRLLQQTGSMTMSSGPAAQISTEK 76 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 VS+N SA++L + ++GVG KKAQAIV YR + G F ++EDL++V G+G L E+N + L Sbjct: 77 VSLNRGSADQLQQVLSGVGEKKAQAIVEYRNKNGKFNSIEDLQKVKGIGPKLFEKNKSRL 136 Query: 122 TL 123 TL Sbjct: 137 TL 138 >UniRef50_Q1J5X8 COME operon protein 1 n=11 Tax=Streptococcus pyogenes RepID=Q1J5X8_STRPF Length = 220 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 9/120 (7%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSK--------AAVPAKASDEEGTR 61 + LA S + A + A+ E P + + + + ++ ++ Sbjct: 99 DVIELAGGLTSEADKHAINFAEKLTDEQVVYVPKQGEEISVLPRSLVSGKKETASKDQSK 158 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V IN AS EEL + + G+G K+AQ I+ R++ G FK +EDL+QV G+G +E+ + Sbjct: 159 VHINKASLEEL-QHIPGIGAKRAQDIIDMRDKLGGFKALEDLRQVSGIGEKTLEKLKDDI 217 >UniRef50_B6G1L2 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1L2_9CLOT Length = 223 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 15/135 (11%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE----- 57 L + + + + + A ++A+ P + V A Sbjct: 90 SSEDRLSDAIKVMGGIVEGADMNAINLAEKLVDGKHYVIPKQGEQIPVDVNAGGSTSGAT 149 Query: 58 ---------EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 +G V+IN A+ E+L + GVG A I++YREE G FK++EDLK V G Sbjct: 150 QTSGGNAQGQGGLVNINTATLEQL-DTLPGVGEATANKIITYREENGGFKSIEDLKNVKG 208 Query: 109 MGNSLVERNLAVLTL 123 +G+ E + + + Sbjct: 209 IGDKKFEDMKSSICV 223 >UniRef50_C0D545 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D545_9CLOT Length = 243 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 20/135 (14%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA-------------------QSKA 48 + + LA +A + ++A+ A K E P Sbjct: 110 IYEAVDLAGGFGPEAAWSYLNLAQEIADGMKIEVPTERQAEEWEKEGRAGVTAGPVSQGG 169 Query: 49 AVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 A ++ +V+IN A EEL + G+G KA+ I+ YRE YGPF+ +ED+ + G Sbjct: 170 AGGRESGSAGSAKVNINTAGKEELM-TLKGIGESKAEDIIRYRETYGPFERIEDIMNISG 228 Query: 109 MGNSLVERNLAVLTL 123 + ++ ++ +T+ Sbjct: 229 IKDAAFQKIKDSITV 243 >UniRef50_UPI0001BC3585 competence protein ComEA n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3585 Length = 192 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 + + A + + + + + A+ K P A + + + + ++IN A Sbjct: 80 ICDAIKKAGGITADADINSLNQAEKVTDGQKIYVPLIGETDA--GYSENSKSSLININTA 137 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 EL + G+G KA AI++YR + G FK +ED+ + G+ + + + + Sbjct: 138 GVNELL-TLPGIGESKANAIIAYRNDNGGFKKIEDIMNISGIKEAAFNKIKENICV 192 >UniRef50_A4F9N2 Competence protein ComEA helix-hairpin-helix region n=2 Tax=Actinomycetales RepID=A4F9N2_SACEN Length = 200 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 9/129 (6%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSK--------AAVPAKA 54 H + L A + + ++A ++A+ + + + + Sbjct: 73 HTGDRVADALQGAGGALPGADISALNLARKVSDGEQLYVGVPPPPELATGSPVGSARGTS 132 Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 + +++ +N A+ E+ + GVG A+ IV +R E G F +VE L++V G+G++ Sbjct: 133 GNGNDSKIDLNTATEEQFDE-LPGVGEVTAKRIVQWRTENGRFASVEQLREVDGIGDTRF 191 Query: 115 ERNLAVLTL 123 R ++ + Sbjct: 192 SRLRELVRV 200 >UniRef50_B0MCG3 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MCG3_9FIRM Length = 200 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 6/124 (4%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS-----KAAVPAKASDEEG 59 ++ ++LA ++ A + A+ + P+ + + P S + Sbjct: 78 DARIVSAIALAGGFTKDASAAGVNQAERIKDGQQIYVPSKKEAGKKEDTSSPTGGSGTQD 137 Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 RV++N+AS EEL + G+G KA I+SYREE G F+ ED+ ++ G+ + + Sbjct: 138 KRVNLNSASREELM-TLTGIGEAKASDIISYREENGGFEKPEDIMKIRGIKQGIYRKIKD 196 Query: 120 VLTL 123 ++T+ Sbjct: 197 MITV 200 >UniRef50_B5CMB0 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CMB0_9FIRM Length = 225 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 9/127 (7%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA--------QSKAAVPAKASD 56 L + LA +A + A+ A + P Q + + Sbjct: 100 DARLYEAIELAGGVNQEAAPEVLNQARVLADGERIYVPKQDEAESYSLQDQGLESNAGTA 159 Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 + +++IN A EEL + G+G KA+ I+ YREE+G F+++ED+ Q+ G+ + + Sbjct: 160 DTRGKININTAGKEELM-TLPGIGEAKAEKILRYREEHGAFRSIEDVMQIEGIKEGVFNK 218 Query: 117 NLAVLTL 123 +T+ Sbjct: 219 IKEDITI 225 >UniRef50_C4L439 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L439_EXISA Length = 191 Score = 114 bits (286), Expect = 8e-25, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 2/118 (1%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA-AVPAKASDEEGTRVSIN 65 A + + + ++A+ K P + + +++ E V +N Sbjct: 74 ARVGDVLSLAVLTDEADPEQLNLAQLLVDGVKIIVPKKGETPISQDSPSTEVETNGVHVN 133 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +A+ EEL + G+G KA+AI+++ + GPFKT E L V G G +E L + Sbjct: 134 SATKEELM-TVPGIGPAKAEAILNHLKANGPFKTYEALGDVKGFGEKTLESMKPYLLV 190 >UniRef50_D2NT61 DNA uptake protein n=2 Tax=Rothia mucilaginosa RepID=D2NT61_9MICC Length = 391 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 60/107 (56%), Gaps = 1/107 (0%) Query: 17 AGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAM 76 G +++ A+ ++ ++ PA ++ + T V+IN A+AEEL + + Sbjct: 286 GGTANAGQGNAANGAAQNGASQGGTQPQPARTLTPAGSAQKGSTPVNINTATAEEL-QTL 344 Query: 77 NGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +G AQ I+++RE +G F++V++L VPG+G S++E ++T+ Sbjct: 345 PRIGPAMAQRIIAWREAHGGFRSVDELDAVPGIGPSMLENLRPLVTV 391 >UniRef50_D1AA93 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AA93_THECD Length = 271 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 10/126 (7%) Query: 7 ALLITLSLACAGM-SHSALAAASVAKPTAVETK--------AEAPAAQSKAAVPAKASDE 57 A + A G+ + + ++A+ + A + + Sbjct: 147 ARVADAIQAAGGLRPGADTGSLNLARRLVDGEQLMIGLPAPTTAMPPPDAMPAGPQDAGA 206 Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 G + +N A+AE+L + GVG AQ I+ YR G F++VE L++V G+G Sbjct: 207 PGGLIDLNTATAEQL-ETLPGVGPVLAQRIIEYRTRNGGFRSVEQLQEVTGIGARRYAEL 265 Query: 118 LAVLTL 123 + + Sbjct: 266 RTRVRV 271 >UniRef50_B6GCK7 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GCK7_9ACTN Length = 256 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 13/134 (9%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAV---------- 50 +K G + + L A + L + + A + P + A Sbjct: 125 LKDGAR-VADALDAAGGLAEDADLTSVNRAALLTDGQRVYVPRVGEQVAPVEGDGSGGVA 183 Query: 51 -PAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 S G V+IN+A EL A+ GVG AQAI+ RE GPF EDL +V G+ Sbjct: 184 GEGAQSTATGQAVNINDADLAEL-DALPGVGPATAQAIIDDREANGPFTAPEDLMRVSGI 242 Query: 110 GNSLVERNLAVLTL 123 G E+ + + + Sbjct: 243 GEKKYEKLKSSICV 256 >UniRef50_A6BGR9 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BGR9_9FIRM Length = 255 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 21/140 (15%) Query: 4 GIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS----------------- 46 L + +A +A A + A+ ++ P + Sbjct: 117 SDSRLYEAIQMAGGFTDEAAGEALNQAEKIEDGSRIYVPTKEEAKAGTENNGTFVQNADN 176 Query: 47 ---KAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 A A +V IN A +EL ++G+G KA AI+ YR+E+G F+ +EDL Sbjct: 177 EKTDATKSTDAGSTADGKVDINTAGKDELM-TLSGIGEAKADAIIRYRDEHGKFQKIEDL 235 Query: 104 KQVPGMGNSLVERNLAVLTL 123 +V G+ + + ++ + + Sbjct: 236 MEVEGIKDGVFQKVKDQIKI 255 >UniRef50_C4Z0V0 Competence protein ComEA n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z0V0_EUBE2 Length = 201 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 2/116 (1%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 + + +A + AA ++A + + P +S+ + V+IN A Sbjct: 88 MYEAVQMAGGMAECADTAALNMAGILSDGDRVYIP-CESEHISETDGTVSTSGLVNINRA 146 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + EL + G+G +A I++YR G F +ED+ +V G+ S + +++ Sbjct: 147 TENELM-TLPGIGSSRAADIINYRNTNGRFDRIEDIMKVSGIKESAFNKIKNYISV 201 >UniRef50_A5VJ84 Competence protein ComEA helix-hairpin-helix repeat protein n=8 Tax=Lactobacillus reuteri RepID=A5VJ84_LACRD Length = 210 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 10/123 (8%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKA---------SDEEGT 60 L A + + L ++AK + P + ++ Sbjct: 89 EALKAAGGPLPSADLRQVNLAKQLTDQQMIYIPLQGETPVASSSTEPSAANNENGNDNSA 148 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 ++++N A+ E+L + + G+G KKA I+ YR+E+G FK++++LK++ G G V + Sbjct: 149 KINLNTATKEQLCQ-ITGIGDKKADLILQYRQEHGQFKSIDELKEINGFGEKTVAKLKDH 207 Query: 121 LTL 123 L++ Sbjct: 208 LSI 210 >UniRef50_A8MHJ7 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MHJ7_ALKOO Length = 207 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 10/125 (8%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSK---------AAVPAKASDEE 58 + + A + ++AK E P + D + Sbjct: 83 VFDAIDAAGGLQQTADRKKINLAKKIIDEEYIYIPREGEELTVGSFGNVPTTNLVGGDTK 142 Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 ++IN ASA EL A+ G+G A I+ +R G F ++EDLK V G+G+ Sbjct: 143 SNLININTASAAELT-ALPGIGEVLANRIIEHRTSKGSFGSIEDLKNVSGIGDRKFSDIK 201 Query: 119 AVLTL 123 +T+ Sbjct: 202 DKITV 206 >UniRef50_C3JRX5 DNA-binding protein n=2 Tax=Rhodococcus erythropolis RepID=C3JRX5_RHOER Length = 293 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 12/132 (9%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR- 61 H + L+ A + + ++A+ + AA V + + + Sbjct: 163 HSGSRIADALAAAGGVLDGAETVGLNLAQKLVDGDQIVVGAADQSGGVSSSTTAGGTSPA 222 Query: 62 ----------VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 V++N A+ EL + GVG A AI+S+R G F +E L +V G+G Sbjct: 223 AAGESGGAGLVNLNTATEAELDE-LPGVGPVTAAAIISWRTSNGKFTDIEQLGEVDGIGP 281 Query: 112 SLVERNLAVLTL 123 + + + ++++ Sbjct: 282 ARLAKLRVLVSV 293 >UniRef50_Q1WU47 ComE operon protein 1 n=2 Tax=Lactobacillus salivarius RepID=Q1WU47_LACS1 Length = 229 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 20/137 (14%) Query: 6 KALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS------------------- 46 + L + A +++ ++ + A + + P Sbjct: 94 QRLAYIIQQAGGLENNADVSKLNYAHKLSDQMMIYVPKQGENYTGDVIIELQSENTMSSD 153 Query: 47 KAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQV 106 + + +++++N A+ E+L + +NG+G KKA+ I+SYR+E+G FKT+++LK V Sbjct: 154 TSNSNTTEEAGDNSKINLNTATKEQLTQ-LNGIGDKKAELIISYRDEHGKFKTIDELKNV 212 Query: 107 PGMGNSLVERNLAVLTL 123 G+G+ LT+ Sbjct: 213 SGIGDKTFAAISDKLTV 229 >UniRef50_C5NY25 ComE operon protein 1 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NY25_9BACL Length = 210 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 4 GIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA--AVPAKASDEEGTR 61 K + + A + + + ++++ + K +S Sbjct: 90 KDKRVKDLIEEAGGLLDDADTSTLNLSQKVKDQMVIYVLKHGEKPKQISDGGSSSSNTDV 149 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 ++IN A+ E L + ++GVG KA+AI+SYRE+ G FK ED+ +V G+G + E+ + Sbjct: 150 ININTANKERLMK-ISGVGKTKAEAIISYREKNGDFKKKEDITKVHGIGKATFEKIKDKI 208 Query: 122 TL 123 + Sbjct: 209 EV 210 >UniRef50_C7XTN3 Competence protein n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XTN3_9LACO Length = 210 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 6/119 (5%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA-----AVPAKASDEEGTRVSI 64 ++ A S + L ++AK + + P + + + T+V++ Sbjct: 93 EAIAAAGGSTSQADLNQVNLAKELLDQQVIQIPRLGEQVLPLGDTLGNANNSSSSTKVNL 152 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N A+ EEL + ++GVG KKA I+ YR ++G FKT +DLK + G G V + L + Sbjct: 153 NTATKEELTK-IDGVGDKKADKILEYRNQHGSFKTPDDLKNITGFGEKTVAKLKDQLAV 210 >UniRef50_B3WE30 ComE operon protein 1 n=9 Tax=Lactobacillus RepID=B3WE30_LACCB Length = 226 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 16/129 (12%) Query: 10 ITLSLACAGMSH-SALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT-------- 60 + A G++ + ++ ++A + + P A + Sbjct: 97 DAVVKAAGGLTDKADISQVNLAMLAVDQESLQIPEKGGAVATAPASGTASIGGTAGQTNA 156 Query: 61 ------RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 V++N A +L + ++G+G KKA I+SYR+ +G FK V +LK+V G+G+ Sbjct: 157 AAGSRAVVNLNTADVSQL-QTISGIGPKKAADIISYRDSHGGFKDVAELKEVHGIGDKTF 215 Query: 115 ERNLAVLTL 123 E LT+ Sbjct: 216 ETLAPQLTV 224 >UniRef50_C2E267 Competence protein ComEA n=4 Tax=Lactobacillus jensenii RepID=C2E267_9LACO Length = 216 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 7 ALLITLSLACAG-MSHSALAAASVAKPTAVETKAEAPAAQSKAA-------VPAKASDEE 58 A + L A G + + L++ + A + K P + + S+ Sbjct: 93 ARVADLIRAAGGETAEADLSSVNRAILLKDQDKVYIPVKGENSPLDTTASQPSSTTSNNG 152 Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 G ++ +N+A+ +L + +NGVG KKA+ I++YRE+ GPFK+V+DL +V G+G + Sbjct: 153 GEKIHLNSATIADL-QKLNGVGQKKAEQIIAYREQNGPFKSVDDLTKVSGIGEKTLAGFK 211 Query: 119 AVLTL 123 L L Sbjct: 212 DQLEL 216 >UniRef50_C9A015 Late competence protein ComEA n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A015_ENTGA Length = 198 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA--AVPAKASDEEGTRVSIN 65 L + LA + A+ + + P A ++ +N Sbjct: 81 LYELIQLAGGVTDEGNEEVMNFAQELSDQQLVIVPHLDDPVVYADNGAEGTLAQNQIDLN 140 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A + +L + + G+G KKA+AI++YREE G FKTVE++K+V G+G E ++ + Sbjct: 141 TADSSQL-QELPGIGAKKAEAIIAYREEKGFFKTVEEVKEVSGIGPKTYEALEGLIKV 197 >UniRef50_C2KND1 Possible helix-hairpin-helix repeat-containing competence protein ComEA n=2 Tax=Mobiluncus mulieris RepID=C2KND1_9ACTO Length = 403 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 27/142 (19%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPA--------------- 52 + L A + L A ++A+ A + P A Sbjct: 263 VTDALEAAGGAKPGADLRALNLARLVADGEQINVPLPGEAPPPGADAGSSGGSGSAGGSG 322 Query: 53 -----------KASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 S +G +V++N A A +L + ++G+G AQ I+ YR++ G F ++E Sbjct: 323 GSGGSGGSGGSGGSGGKGDKVNLNTADATDL-QTLSGIGPALAQRILDYRKKNGQFHSIE 381 Query: 102 DLKQVPGMGNSLVERNLAVLTL 123 L +V G+G +++ER + L Sbjct: 382 QLDEVSGIGPAMMERLRDHVIL 403 >UniRef50_C2M102 ComE operon protein 1 n=1 Tax=Staphylococcus hominis SK119 RepID=C2M102_STAHO Length = 220 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 8/127 (6%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE--- 57 MK + + + ++ + ++++ + P + Sbjct: 96 MKKNDR--VKDVLKKAKVSENADITKINLSEKLTDQKMIYIPNKNETKINATPTNQSNLN 153 Query: 58 --EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 E +V++N A+ EL + G+G K + I+ YREE G F VEDLKQV G+G E Sbjct: 154 TSESIKVNLNTANERELL-NVPGIGPTKVKEIIKYREEKGQFNNVEDLKQVRGIGGKTFE 212 Query: 116 RNLAVLT 122 + T Sbjct: 213 KLKDYFT 219 >UniRef50_C0FYV5 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FYV5_9FIRM Length = 201 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 2/117 (1%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS-KAAVPAKASDEEGTRVSINN 66 + +++A + + A + A+ P + AA S+ + + IN Sbjct: 86 VYEAVAMAGGMTEDAGMEAVNQAEFVTDGQMLRIPTMEEVAAAQEESESNVDDGLLDINR 145 Query: 67 ASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 AS + + G+G KA+A+ YRE +G F ++E++ V G+ + + + + Sbjct: 146 ASVADFM-TLPGIGQSKAEALFQYREAHGRFSSIEEIMNVDGIKEGVFNKIKDSIKV 201 >UniRef50_C6A7M7 Putative DNA-binding protein n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=C6A7M7_BIFLB Length = 258 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 1/112 (0%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAE 70 ++ + A++ + + P+ + P+ + +++ T V+IN A Sbjct: 146 AANMGALDTQATTNASSHTTATASPSDRDSTPSTAAPEPSPSASDNKQDTLVNINTADEA 205 Query: 71 ELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +L + + G+G A I+ YR ++G F +++DL VPG+G VE+ Sbjct: 206 QL-QEIKGIGPVTAARIIEYRTQHGAFASLDDLVNVPGIGMKTVEKLRPWAC 256 >UniRef50_B9LBV6 Helix-hairpin-helix DNA-binding class 1 n=3 Tax=Chloroflexus RepID=B9LBV6_CHLSY Length = 235 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%) Query: 5 IKALLITLSLACAGMS-HSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVS 63 + A +I + A G++ + ++ ++A P A A+ A ++ + Sbjct: 116 LNARVIDVLQAAGGLTDQADISGLNLAALVRDGEHIRVPFAGEAVAL-LVADVQQTGLLD 174 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +N ASA +L + GVG A I+ RE GP+++VE+L++V G+G L + ++T+ Sbjct: 175 LNRASAADLEE-LPGVGATLAARIIERRETQGPYRSVEELREVSGIGEKLFAQIAPLVTI 233 >UniRef50_Q49Y31 Putative DNA uptake protein and related DNA-binding protein n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49Y31_STAS1 Length = 240 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 20/140 (14%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAA----------- 49 MK + + L + + L++ ++A+ + P K Sbjct: 104 MKDTDR--VKQLVDKAILLKDADLSSVNLAEKLQDQKVIYIPKIGDKDQKDINMNHFALK 161 Query: 50 ------VPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 S +++IN+A+ +L +NG+G KA+AI+ YR+++GPF++VE L Sbjct: 162 NNHTEDSKKGNSTINSEQININDATESQLL-TINGIGPTKAKAIIEYRQQHGPFESVEQL 220 Query: 104 KQVPGMGNSLVERNLAVLTL 123 K V G+G +E+ + LT+ Sbjct: 221 KDVNGIGAKTLEKIGSKLTI 240 >UniRef50_A3CLU6 DNA uptake protein, putative n=38 Tax=Streptococcus RepID=A3CLU6_STRSV Length = 226 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 14/129 (10%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEE--------- 58 + + A + + + + A+ E + A + + Sbjct: 98 VHEAIQKAGGLTADAEAKSINQAQKLTDEAVIYVAKIGEEGADVTQGGQHQAGASDSASA 157 Query: 59 ----GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 +V++N A+ EL + ++G+G K+A I++YRE G FK+V+DLK+V G+G+ + Sbjct: 158 SGGKSDKVNLNTATEAEL-QTISGIGQKRASDIIAYRESNGRFKSVDDLKKVSGIGDKTL 216 Query: 115 ERNLAVLTL 123 E+ +T+ Sbjct: 217 EKLKEYVTV 225 >UniRef50_UPI000178992B competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178992B Length = 220 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 1/102 (0%) Query: 20 SHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGV 79 SA A+V+ ++ P + ++ + +++N A A L + G+ Sbjct: 118 PSSASDQAAVSPASSPPEAVGQPVSANEPPALPPSIPLPSGLINVNTADAATLME-LPGI 176 Query: 80 GLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 G KA+AI+ YR ++GPF+T DL V G+G ++E+ + Sbjct: 177 GEAKAKAIIDYRNQFGPFRTQADLMNVKGIGPKMLEKMKPYV 218 >UniRef50_A4J7G9 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J7G9_DESRM Length = 213 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 23/139 (16%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVP--------------- 51 + + + L+ ++A P K P+ + A Sbjct: 75 SRVHDALKLAVPTQDADLSMLNLAAPLKDGQKLPIPSKAEQQASEQRPNQMDNVPSQGVA 134 Query: 52 -------AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLK 104 + V+IN A +EL ++ G+G A+ I+ +RE GPF+ EDLK Sbjct: 135 LKASKPLTPTVAQGTGLVNINTAGPQEL-DSLPGIGPALAERIIQHREANGPFQCTEDLK 193 Query: 105 QVPGMGNSLVERNLAVLTL 123 V G+G+ E +TL Sbjct: 194 NVSGIGDKKFEDLQHRITL 212 >UniRef50_C7MDA6 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MDA6_BRAFD Length = 279 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 15/128 (11%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE------------ 57 L A + LAA ++A+P + P + Sbjct: 153 DALRAAGGATEEAELAAVNLARPLVDGEQIHVPLPGEQPPPAEDGPAAPPGGGEGSGPPG 212 Query: 58 --EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 G + +N A A EL + GVG AQ I+ +RE+ G F +V+ L +V G+G + +E Sbjct: 213 TDAGGAIDLNTAGAAELEE-LPGVGPAIAQRILEHREKNGAFTSVDGLLEVSGIGPATLE 271 Query: 116 RNLAVLTL 123 + A T+ Sbjct: 272 KIRAEATV 279 >UniRef50_D2BL64 ComE operon protein 1 n=4 Tax=Lactococcus lactis RepID=D2BL64_LACLK Length = 215 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 10/125 (8%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEG-------- 59 L+ + A + + +++ E P ++ S Sbjct: 91 LVDLIKEAGGFTDQADQKSINLSAKLKDEEVIYVPKIGENSSTENTDSSANSVTSQVSTT 150 Query: 60 -TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 +++IN A EL + + GVG KKAQ I+ +R + G F ++EDL +V G G+ +E+ Sbjct: 151 TEKININQADVTEL-QKLTGVGQKKAQDIIDFRTKNGDFISLEDLGKVSGFGDKTLEKLK 209 Query: 119 AVLTL 123 L Sbjct: 210 DELCF 214 >UniRef50_A8RS55 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RS55_9CLOT Length = 293 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 26/142 (18%) Query: 7 ALLITLSLACAGMSHSAL-AAASVAKPTAVETKAEAP----------------------- 42 + + A G S +A+ ++A+ K + P Sbjct: 153 SRVYEAIEAAGGFSEAAVPDYLNLAQVLEDGMKIQVPDREQAEEWKARGLTQSGISMGGG 212 Query: 43 -AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 A + RV++N AS EEL + G+G +A I+ YR+E+G FK++E Sbjct: 213 TAGVQTSGRTGSGEGGSKARVNLNTASREELM-TLRGIGASRADDIIHYRQEFGGFKSIE 271 Query: 102 DLKQVPGMGNSLVERNLAVLTL 123 D+ V G+ N+ E+ +T+ Sbjct: 272 DIMNVSGIKNAAFEKIKDSITV 293 >UniRef50_C2C1Y0 ComEA family DNA-binding competence protein n=1 Tax=Listeria grayi DSM 20601 RepID=C2C1Y0_LISGR Length = 198 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Query: 14 LACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELA 73 LA + + ++A E A + V+IN AS +EL Sbjct: 89 LAGGVNQTADMKQINLAAKLKDEESIYIAKIGEIAEQTDTDKQRKDDTVNINTASLQEL- 147 Query: 74 RAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + + GVG KAQAI+ YRE G F+ VEDLK + G G +ER + + Sbjct: 148 QGIPGVGPAKAQAILEYRESTGLFQKVEDLKNISGFGEKTIERLKNFIAV 197 >UniRef50_A1SHW1 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Nocardioides sp. JS614 RepID=A1SHW1_NOCSJ Length = 300 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA---AVPAKASDEEGTRVSI 64 ++ L A L+ ++A+ + A G V + Sbjct: 183 VVDALEAAGGARRGVDLSGLNLARVLVDGEQVVVGEPAPTPLGAAAVPTPGAPGGPLVDL 242 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 N A+ EL A+ VG AQAI+++R+E+G F +V++L +V G+G++ + + +T+ Sbjct: 243 NTATQAEL-EALPEVGPVTAQAILAWRDEHGGFTSVDELLEVDGIGDATLGQLAPFVTV 300 >UniRef50_Q38WQ9 Putative bacterial type II secretion/competence system, protein ComEA-like n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38WQ9_LACSS Length = 234 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 27/142 (19%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQ---------------------- 45 L L A + ++A+ + P Sbjct: 93 LFEVLKNAGGPTDAADTKRLNLAQKLTDQLIIYIPKKGEVVTDQELIQAPQQIATTSERT 152 Query: 46 ----SKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 S +S + ++ +N A + +L + +NG+G KKA+ I++YR+E G FK +E Sbjct: 153 QEQASTGTSANASSTSDTAKIDLNQADSTQL-QTLNGIGPKKAEQIIAYRDEQGKFKQIE 211 Query: 102 DLKQVPGMGNSLVERNLAVLTL 123 DL++V G+G E+ + + + Sbjct: 212 DLQKVGGIGPKTFEQLQSQICV 233 >UniRef50_A4W7B3 Competence protein ComEA helix-hairpin-helix repeat protein n=4 Tax=Enterobacteriaceae RepID=A4W7B3_ENT38 Length = 129 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 86/129 (66%), Positives = 103/129 (79%), Gaps = 6/129 (4%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA------QSKAAVPAKA 54 MK GIKAL ITL++A AGMS SA+AA VAK A + A++ Q+KA AKA Sbjct: 1 MKRGIKALFITLAIATAGMSFSAMAATPVAKTHATSSAADSATPSASASEQTKAKASAKA 60 Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 +DEEGT+VSIN+ASAE+LA AMNGVGLKKAQAI++YR+EYGPFKT++DLKQVPG+GNSLV Sbjct: 61 TDEEGTQVSINSASAEDLAHAMNGVGLKKAQAIIAYRDEYGPFKTIDDLKQVPGIGNSLV 120 Query: 115 ERNLAVLTL 123 ERNL LTL Sbjct: 121 ERNLTHLTL 129 >UniRef50_B0S189 Late competence protein n=2 Tax=Finegoldia magna RepID=B0S189_FINM2 Length = 212 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 12/124 (9%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS----------KAAVPAKASDEEG 59 + LA + + ++A E K P+ + + + Sbjct: 90 DIIDLAGGFTKDADTKSVNLAMKLKDEMKIFIPSKNEISKLQNHNTENSQIVTLKDNNST 149 Query: 60 TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLA 119 V+IN A + +L + + G+G KA+ I+ +RE+ FK +E+LK V G+G E + Sbjct: 150 NLVNINTADSNKL-QTLPGIGPSKAKKIIEFREKN-QFKKIEELKNVDGIGEKTFESLKS 207 Query: 120 VLTL 123 ++T+ Sbjct: 208 LITI 211 >UniRef50_B1N069 DNA uptake protein n=1 Tax=Leuconostoc citreum KM20 RepID=B1N069_LEUCK Length = 216 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 4/116 (3%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAK---ASDEEGTRVSINNA 67 ++ A S + + ++A+ + T P + A + ++++N A Sbjct: 102 AIAQAGGITSEADITTVNLAQKMSDGTVIYVPNKNEPQPNNERTVIAKKSDSAKINLNTA 161 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +A EL + + G+G KKA+ I++YRE +G FK V +LK +PG+G+ +E L + Sbjct: 162 TANEL-QMLEGIGAKKAEQIIAYRETHGHFKDVTELKGIPGIGDKRIESLKDKLLV 216 >UniRef50_C4WC99 ComE operon protein 1 n=1 Tax=Staphylococcus warneri L37603 RepID=C4WC99_STAWA Length = 225 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 9/130 (6%) Query: 2 KHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVP--------AK 53 K +I + + + + ++ + P + Sbjct: 97 KMNSSDRMIDILNKAQLLKTADTKQLNFSEKLIDQKLIYVPEKGENSVQQVQSQSNQFNG 156 Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 + + +++N A+ E+L + + G+G KA+ I+ Y+ + G F +++DLK + G G+ Sbjct: 157 TGNVDKAPINLNLATEEQLMK-VPGIGPSKAKEIIEYKNQKGSFNSIDDLKNIKGFGSKT 215 Query: 114 VERNLAVLTL 123 E+ T+ Sbjct: 216 FEKLKEYFTV 225 >UniRef50_A6NW57 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW57_9BACE Length = 147 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 1/102 (0%) Query: 22 SALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGL 81 S +A+ V++ A A +++ ++IN A +E L + + +G Sbjct: 46 SVMASLPVSQTPEPSETGPVETETQTPAPSPSAPEQQSGLININTADSETL-QTLPSIGE 104 Query: 82 KKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 K+A AI++YREE+GPF+ VED+ V G+G ++ + + +T+ Sbjct: 105 KRAAAIIAYREEHGPFRIVEDITNVSGIGEGILSQIIDYITV 146 >UniRef50_A7HNQ6 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HNQ6_FERNB Length = 227 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Query: 49 AVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 + +++IN A+ EEL + + G+G KAQAI+ YRE+ G FK++E++K V G Sbjct: 153 QSQNGNKNISPEKININTANLEEL-QKLPGIGPSKAQAIIDYREKVGKFKSIEEIKNVKG 211 Query: 109 MGNSLVERNLAVLTL 123 +G E+ ++T+ Sbjct: 212 IGEKTYEKLKELITI 226 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Query: 37 TKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGP 96 + E S + + + +N AS E+L + + G+G KA+AIV YRE+ P Sbjct: 45 AQKEQQVNTSVKEANFQKREYASPIIDLNTASVEQL-QTLPGIGPSKARAIVEYREKQ-P 102 Query: 97 FKTVEDLKQVPGMGNSLVERNLAVLTL 123 F EDL V G+G E+ +T+ Sbjct: 103 FSKPEDLMNVSGIGPKTFEKIKDRITV 129 >UniRef50_UPI0001C358FF helix-hairpin-helix repeat-containing competence protein ComEA n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C358FF Length = 255 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 61/152 (40%), Gaps = 31/152 (20%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS-------------- 46 M+ G + + + A +A ++A+ + K P +S Sbjct: 106 MEEGSR-IFQVVERAGGFTERAAQQYLNMAQIVSDGMKIVVPDGESMEGAERYGIDSASG 164 Query: 47 ---------------KAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYR 91 + +V++N A+ EEL + G+G KA I++YR Sbjct: 165 SGSMGGGVMVPGMAAAGSGSEPGGSAAKEKVNLNTATREELM-TLKGIGEAKADDIIAYR 223 Query: 92 EEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 E +G F+ +ED+K++ G+ N+ E+ +T+ Sbjct: 224 ESHGGFQKIEDIKKISGIKNAAFEKIKDDITV 255 >UniRef50_A0LSY6 Helix-hairpin-helix motif n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSY6_ACIC1 Length = 250 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 19/134 (14%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKA------------------EAPAAQSKAA 49 + ++ A + + A ++A + +A S+A+ Sbjct: 118 VFDAVTAAGGVLPGTDTVALNLASRLVDGEQVVVGIPLPTSGIGGVLPARDAGEPPSEAS 177 Query: 50 VPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 P E +++N A+ +EL + GVG A IV++R +G F +V L++VPG+ Sbjct: 178 RPTAGQAAEHGLINLNTATQQEL-ETLPGVGPVLAGNIVAWRNRHGRFSSVAQLQEVPGI 236 Query: 110 GNSLVERNLAVLTL 123 G + + + + Sbjct: 237 GPAKYAQLRTRVRV 250 >UniRef50_Q4JWS7 Putative uncharacterized protein n=2 Tax=Corynebacterium jeikeium RepID=Q4JWS7_CORJK Length = 294 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 55/145 (37%), Gaps = 32/145 (22%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKAS-------------- 55 + A G+ + + ++A+P + + S+ A Sbjct: 151 EAIEAAGGGLPKAVVLGINLAEPVSDGMQIVVDDRGSRVVYAGGAQSAPGGTAGAGAGGA 210 Query: 56 -----------------DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFK 98 + +V++N A A +L ++G+G A+AI+ +RE GPF Sbjct: 211 NQGGGAGGGSARGADGANGADAKVNLNTADATQL-ETISGIGPATAEAIIDWRESNGPFT 269 Query: 99 TVEDLKQVPGMGNSLVERNLAVLTL 123 +VE L V G+G + E +T+ Sbjct: 270 SVEQLLDVRGIGPAKFEAMRDAVTI 294 >UniRef50_A5IND1 Competence protein ComEA helix-hairpin-helix repeat protein n=7 Tax=Thermotogaceae RepID=A5IND1_THEP1 Length = 181 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 44 AQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 + V +N AS E+L ++ G+G KAQ I+ YRE +G F +VE+L Sbjct: 29 ETKTEEDTTPSQKVVAFPVDLNTASLEDLM-SIPGIGPVKAQRIIDYRESHGGFSSVEEL 87 Query: 104 KQVPGMGNSLVERNLAVLTL 123 K V G+G +E+ +T+ Sbjct: 88 KNVSGIGEKTLEKISGYVTV 107 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 E T++++N AS EEL + +G KA+AIV YRE+ GPF + EDL VPG+G +E+ Sbjct: 117 EVTKLNVNTASVEEL-ETLPYIGEMKAKAIVEYREKNGPFCSPEDLLNVPGIGEKTLEKI 175 Query: 118 LAVLTL 123 +T Sbjct: 176 RGKITF 181 >UniRef50_A7BDT8 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDT8_9ACTO Length = 231 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 1/115 (0%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 ++ ++ A + L + ++A+ + ++A G V + A Sbjct: 118 VIDAITAAGGATPEADLESINLARILVDGEQIRVAVVGDSPPASSEAGTTAGACVRLATA 177 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 + EL + + G+G AQ I+SYR + TVE+L VPG+G SL+E+ + Sbjct: 178 TEAEL-QTLPGIGPSLAQRIISYRATHPRLSTVEELDDVPGIGPSLIEKIRTGVC 231 >UniRef50_D1Y3C2 ComE operon protein 1 n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3C2_9BACT Length = 205 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 8/126 (6%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR--- 61 + + A + + ++A P AA AK++ + + Sbjct: 81 DARVFQLVEAAGGFRFDADQSQVNLAAPIRDGAHVHVKAAALAPRASAKSASSQDGKRES 140 Query: 62 ----VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 V +N A+ EEL A+ GVG A+ I+ YR+ +GPF + E L +V G+G + Sbjct: 141 GTQYVYVNTATEEELC-ALPGVGPATARKIIEYRQTHGPFHSAEALLEVSGIGKGKLGHM 199 Query: 118 LAVLTL 123 +L Sbjct: 200 QTLLRF 205 >UniRef50_B8FUQ3 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FUQ3_DESHD Length = 216 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 26/142 (18%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAP------------------------ 42 A L + + + + A+ K P Sbjct: 74 ARLHDALQQVGPLPEANIDQINPAEKLKDGQKIIVPYKPVPQPQPQPALAAAGSQGESQG 133 Query: 43 -AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 A + A A ++IN A A EL + G+G A+ I+ YR E+G F E Sbjct: 134 QTATVTPNLGAAAPSRSSNLININTADAAEL-DKLPGIGPALAERIIQYRMEHGLFLQPE 192 Query: 102 DLKQVPGMGNSLVERNLAVLTL 123 DLK+V G+GN + ++T+ Sbjct: 193 DLKKVSGIGNKTYAKMADMVTV 214 >UniRef50_A4XAF1 Competence protein ComEA helix-hairpin-helix repeat protein n=3 Tax=Micromonosporaceae RepID=A4XAF1_SALTO Length = 280 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 8/123 (6%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVE-------TKAEAPAAQSKAAVPAKASDEEGT 60 + + A + +A + A+ T A A +A G Sbjct: 159 VADAVQAAGGALPGVDVALFNPARKVTDGELILIGVTAPPGAAPAGGVAPGGEAGVGPGG 218 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +V++N AS +L + GVG AQ I+ +R+++G F++V DL+QV G+G++ E+ + Sbjct: 219 KVNLNTASLAQL-DTLPGVGPVLAQRILDHRQQHGGFRSVSDLRQVGGIGDTRYEQLKDL 277 Query: 121 LTL 123 +T+ Sbjct: 278 VTV 280 >UniRef50_C9LMX1 Late competence protein ComEA n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMX1_9FIRM Length = 185 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 7 ALLITLSLACAG-MSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSIN 65 + + A + ++ + ++A+P + P P + + V+IN Sbjct: 75 SRVYDAVQAAGNVLPYADMEGVNMAEPVEDAMRVYIP------LNPERTTPAAAGLVNIN 128 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +AS EL + G+G K A I+ YR E+G F++ E+LK+VP +G + +TL Sbjct: 129 HASGTEL-ETLPGIGAKTADKIIEYRNEHGGFRSKEELKEVPTIGEGKYAKVSERITL 185 >UniRef50_B9KYW7 Competence protein ComEA helix-hairpin-helix repeat region n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYW7_THERP Length = 199 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 10/129 (7%) Query: 4 GIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAP---------AAQSKAAVPAKA 54 G +A + + + + L+ +A P A A + Sbjct: 68 GSEARVAEVVEQAGPLPEADLSRVQMAARLQDGQMVVVPVRASPDLGHARGDAAGSSTEP 127 Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 + + IN A+ E+L + + GVG AQ IVSYRE +GPF++ E L +VPG+ +V Sbjct: 128 TVSAEQLIDINRATVEDL-QRLPGVGPILAQRIVSYRETHGPFQSPEQLAEVPGISPRMV 186 Query: 115 ERNLAVLTL 123 + ++T+ Sbjct: 187 DEWAGLITV 195 >UniRef50_UPI00016BFF02 late competence protein (DNA binding and uptake) n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFF02 Length = 216 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 8/123 (6%) Query: 8 LLITLSLACAGMSH-SALAAASVAKPTAVETKAEAPA------AQSKAAVPAKASDEEGT 60 L+ L + G+++ + LA ++A +K PA ++A + + AS + Sbjct: 94 LINDLVVMAGGLTNDADLATINLAATVTTNSKVYIPAFDDEVPVMTQATISSIASQSDDG 153 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 + IN A+ EL ++ G+G KA +I+SY E+ G F + ++ V G+G++ ++ + Sbjct: 154 LIHINTATLAEL-DSLPGIGPVKATSILSYIEQNGEFTDINEILDVSGIGDATLDNIKDL 212 Query: 121 LTL 123 +T+ Sbjct: 213 ITI 215 >UniRef50_C9M7Q3 Putative comEA protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7Q3_9BACT Length = 206 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAV----PAKASDEEGTRVSIN 65 + A + A ++A P + ++ A SD V++N Sbjct: 90 DIVDAAGGLTPDADRTAVNLAAKAVDGGHLHVPKSGGGSSTGLPGSALTSDSGSKLVNVN 149 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A +L R + G+G A+ IV +R++ GPF+ +DL QV G+G + + + L+ Sbjct: 150 QAGESDLVR-LPGIGPVLARRIVEWRQKRGPFRQPKDLLQVSGIGAAKLAKLQPFLSF 206 >UniRef50_C4FEZ1 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FEZ1_9BIFI Length = 217 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 60/112 (53%), Gaps = 4/112 (3%) Query: 12 LSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEE 71 + G ++ + A + + ++++++ +A ++ +G V++N A+ EE Sbjct: 110 AEASAGGRTNRSQAQHDSDQEKSGQSQSDSTSASQ---AERFSTQSDGGLVNLNTATLEE 166 Query: 72 LARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 L +++G+G A+ I+ YR+ G F +V+ L +V G+G +E+ A +T+ Sbjct: 167 L-DSISGIGPVTARKILDYRQRIGMFSSVDQLLEVSGIGVKTLEKMRAKVTV 217 >UniRef50_C5RDZ4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RDZ4_CLOCL Length = 249 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 24/140 (17%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKA-----------------------EAPA 43 + + L A G++ +A + A E A + Sbjct: 110 SRIRDLIEAAGGLTENADKTINQALKLKDEDSVVVYKVGDHIENAVAVNNIISSNNSAGS 169 Query: 44 AQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 K ++++ +V IN A+ E+L ++ G+G ++ I+ YRE+ GPFKT+E+L Sbjct: 170 NNKKGDDKGTSTEKTDVKVDINTATKEQLM-SLKGIGETYSEKIIEYREKNGPFKTIEEL 228 Query: 104 KQVPGMGNSLVERNLAVLTL 123 K V G+G E+ + + Sbjct: 229 KNVSGIGEKTFEKIKDSIEV 248 >UniRef50_A9KHN6 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KHN6_CLOPH Length = 238 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 18/138 (13%) Query: 3 HGIKALLITLSLACAGMS-HSALAAASVAKPTAVETKAEAPAAQS--------------- 46 KA ++ A G + +A A + A + P + Sbjct: 100 LSEKARVVDAIEAAGGFTKEAAEDAFNQAALITDGQRIYVPNKKEVETLSDVEIAEVVFS 159 Query: 47 -KAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQ 105 T+V+IN A+ EEL + G+G KA +I+SYR E+G F T+E+L+ Sbjct: 160 NPTGKEKNDESSNKTKVNINKATKEELM-TIPGIGEAKALSIISYRTEHGLFSTIEELQN 218 Query: 106 VPGMGNSLVERNLAVLTL 123 + G+ +++ R +T+ Sbjct: 219 ISGIKSAVFNRMKDFITV 236 >UniRef50_C8W6Z4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W6Z4_ATOPD Length = 250 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 16/130 (12%) Query: 9 LITLSLACAGMSHSALAA-ASVAKPTAVETKAEAPAAQSKAAVP-------AKASDEEGT 60 + G++ A + ++A P K P +A S+++ Sbjct: 122 VNDAIQIAGGLTEDANSQDINLASPVEDGQKIYIPRKGEEAPPEILQPDQNKATSNKQTD 181 Query: 61 R-------VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 + V IN A+ EE + + GVG A+ IV+ R++ GPFKT EDL +V G+G Sbjct: 182 KKSDKKTVVDINRATVEEFTK-LKGVGEGLAKRIVADRQKNGPFKTTEDLMRVSGIGQKK 240 Query: 114 VERNLAVLTL 123 ++ + + Sbjct: 241 FDQLKDNIRV 250 >UniRef50_C9XMM2 Putative competence protein n=4 Tax=Clostridium difficile RepID=C9XMM2_CLODC Length = 234 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 22/142 (15%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT-- 60 K L + L + L +++ E P +V + + Sbjct: 93 ESDKRLYDAVELLGGTTKEADLNGVNLSVRLEDEQHYIIPKIGEATSVTSNDDSNKPNQK 152 Query: 61 -------------------RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 +V+IN A+ EEL ++ GVG A I+ +REE G F ++E Sbjct: 153 NESRGEPKNKSNKNISNESKVNINVATIEEL-DSLPGVGEATANKILQHREENGQFSSIE 211 Query: 102 DLKQVPGMGNSLVERNLAVLTL 123 ++K V G+G+ E ++ + Sbjct: 212 EIKNVNGIGDKKYENIKDLICV 233 >UniRef50_D2PUY5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUY5_9ACTO Length = 226 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 24 LAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR-VSINNASAEELARAMNGVGLK 82 L ++A+P + P V +N A+ ++L A+ GVG Sbjct: 127 LTTLNLARPVTDGEQILVGLPNLPPPGPNPTPGRSTPTSVDLNTATLDQL-DALPGVGPV 185 Query: 83 KAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 AQ I+ YR E+G F T++ L++VPG+G E + + Sbjct: 186 LAQRILDYRTEHGRFTTIDQLQEVPGVGTKKYEDLKPHVRI 226 >UniRef50_D0WN87 Competence protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WN87_9ACTO Length = 380 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 30/146 (20%) Query: 7 ALLITLSLACAGMSHSALAA-ASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR---- 61 + + A G++ A +A ++A + A A A Sbjct: 236 SRVDDAVRAAGGLTERAESAGTNLAAQLSDGEHVHVAATGESAPSGALGPSSGSDAAGGK 295 Query: 62 ------------------------VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPF 97 V++N A AEEL + + GVG A+AI+++REE G F Sbjct: 296 KGAGASGKGAGKKAAAGQKAGAAKVNVNTAGAEEL-QTLPGVGPATAKAIIAWREENGRF 354 Query: 98 KTVEDLKQVPGMGNSLVERNLAVLTL 123 ++V+DL V G+G + + + +++ Sbjct: 355 RSVDDLLDVSGIGKATLAKFRDRVSV 380 >UniRef50_A8FFE5 Competence protein EA n=2 Tax=Bacillus pumilus RepID=A8FFE5_BACP2 Length = 209 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSK------AAVPAKASD 56 + + A S + + A A A + + Sbjct: 83 QSDARVEEAIRRAGGFTSKADTIEINQAAKLEDSMMIYVRKQGEAERQTQTAGADAPSGN 142 Query: 57 EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 E+ V++N A A EL + +NG+G KA+AI++YREE+G F+ +EDL+ + G G +ER Sbjct: 143 EKSQSVNVNQADAAEL-QTINGIGPAKAEAIITYREEHGEFQQIEDLRNISGFGEKTIER 201 Query: 117 NLAVLTL 123 LT+ Sbjct: 202 LKNELTV 208 >UniRef50_C4DRK5 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DRK5_9ACTO Length = 225 Score = 109 bits (273), Expect = 2e-23, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 20/136 (14%) Query: 7 ALLITLSLACAGMSHSALA--AASVAKPTAV------ETKAEAPAAQSKAAVPAKASDEE 58 A + A G++ + + ++A+ E + E P A P + + Sbjct: 91 ARVADAIEAAGGLTPESASPGYLNLARKVKDGELIVVEAEGENPDDPEAPAEPDPSEEPP 150 Query: 59 GT-----------RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVP 107 V++N A+ +ELA + G+G A +IV YRE+ G F +V+ L +V Sbjct: 151 TGETPDDPNAPGEPVNLNKATEDELA-TLPGIGPVTAASIVEYREQSGGFDSVDQLTEVD 209 Query: 108 GMGNSLVERNLAVLTL 123 G+G + +++ +T+ Sbjct: 210 GIGPATLDKLADKVTV 225 >UniRef50_C0W2X2 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W2X2_9ACTO Length = 253 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 23/138 (16%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAV----------------- 50 + + A + + ++A+P A + P A + Sbjct: 117 VADAIDAAGGPAADADTDQLNLARPLADGEQVRVPRAGEDTSTWAQQPAGSGSGQATAGQ 176 Query: 51 -----PAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQ 105 + G +++N A A L + G+G A+ IVS+RE +GPF TVEDL Sbjct: 177 TDGQPAHSQGAQAGGLINLNTADAAALED-LPGIGPALAERIVSHRESHGPFATVEDLLD 235 Query: 106 VPGMGNSLVERNLAVLTL 123 VPG+G + +E T+ Sbjct: 236 VPGIGQAKLEALRDRATV 253 >UniRef50_C5CCD9 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=2 Tax=Micrococcus luteus NCTC 2665 RepID=C5CCD9_MICLC Length = 285 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 24/139 (17%) Query: 7 ALLITLSLACAGMSHSA-LAAASVAKPTAVETKAEAPAAQSKA----------------- 48 + + A G + A ++A P + P+A + Sbjct: 147 SRVADAVRAAGGPTRDARAERINLAAPLDDGQQVLVPSAHTPQDALDRVAGAAQEQPTPT 206 Query: 49 -----AVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 A G V +N A A +L + + GVG A+ I+++RE GPF ++DL Sbjct: 207 TGRAGAGDEPGGAGPGGTVDLNTADAADL-QTLPGVGPATAEKIIAHRETVGPFSGLQDL 265 Query: 104 KQVPGMGNSLVERNLAVLT 122 V G+G + ++R +++ Sbjct: 266 DAVSGIGPATLDRLRDLVS 284 >UniRef50_D0BMQ2 Competence protein ComEA n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BMQ2_9LACT Length = 201 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 14/125 (11%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEE----------- 58 + A + ++A+ + + + P SK + E Sbjct: 75 EVIKKAGGFTEEADETKINLAQKISDQMQIIVPNVHSKQEDGLTEGNSEKGSSTNTSVSN 134 Query: 59 --GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 ++IN A+ EEL + + G+G KKA+AI+ YR+E+G F+T EDL QV G+G +E Sbjct: 135 SKQGTININTATLEEL-QTIKGIGKKKAEAILQYRKEHGAFRTKEDLLQVKGIGKKALEA 193 Query: 117 NLAVL 121 + + Sbjct: 194 IESQV 198 >UniRef50_C0BAZ1 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BAZ1_9FIRM Length = 200 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 11/122 (9%) Query: 12 LSLACAGMSHSA-LAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEE---------GTR 61 A G++ +A + A + P+ + + + + S + Sbjct: 79 AIEAAGGLTEAAGQVYLNQAAHLTDGQRIYVPSREEEQTLKEEDSPSDMADAGMGKDTGI 138 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 +++N A+ EL +++G+G +A+AI++YRE G F+ +EDLK+V G+ + ++ + Sbjct: 139 INLNTATKAELL-SLSGIGESRAEAIIAYRETNGGFRKIEDLKKVDGIKEGIFQKIREQI 197 Query: 122 TL 123 T+ Sbjct: 198 TV 199 >UniRef50_C7MNJ1 Competence protein ComEA-like protein with helix-hairpin-helix repeat region n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNJ1_CRYCD Length = 255 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 25/139 (17%) Query: 9 LITLSLACAGMSH-SALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEE--------- 58 + A GMS + ++A+ + P + ++ Sbjct: 118 VEAAVEAAGGMSEDADANGLNLARVVQDGEQIYVPGLATDDTATNQSGASSSVPSTSTSS 177 Query: 59 --------------GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLK 104 +V+IN A A EL ++ GVG AQ I++YR+ G F T EDLK Sbjct: 178 KSSSQSAGSAGSSRTQKVNINTADANELC-SLPGVGQSTAQKIITYRQTEGRFATKEDLK 236 Query: 105 QVPGMGNSLVERNLAVLTL 123 QV G+G +T+ Sbjct: 237 QVSGIGEKKYAALADFITV 255 >UniRef50_Q042S8 DNA uptake protein related DNA-binding protein n=12 Tax=Lactobacillus RepID=Q042S8_LACGA Length = 246 Score = 108 bits (271), Expect = 4e-23, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%) Query: 1 MKHGIKALLITLSLACAGMSHSALA-AASVAKPTAVETKAEAPAAQSKAAVPAKASDEEG 59 +K+G + L L C G++ A A + A + + P K P Sbjct: 114 LKNGAR--LNDLLKICGGLTDKAETRAINRAALLKDQDQIYVPHIGEKVENPPGNGTSNN 171 Query: 60 ------------TRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVP 107 +V +N A+ ++L + +NGVG KKA+ I++YR++ G FK +EDL +V Sbjct: 172 NSAASDSSSSNSEQVHLNTATVQDL-QKLNGVGQKKAEQIIAYRDQNGGFKQIEDLTKVT 230 Query: 108 GMGNSLVERNLAVLTL 123 G+G E+ L L Sbjct: 231 GIGEKTFEKLKDQLAL 246 >UniRef50_Q6F851 Putative DNA uptake protein and/or related DNA-binding protein n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6F851_ACIAD Length = 128 Score = 108 bits (271), Expect = 4e-23, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 52/83 (62%), Gaps = 1/83 (1%) Query: 41 APAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTV 100 +A + G +V+IN+A+A+EL + ++GVG KKA AIV YR++YG F +V Sbjct: 47 NSSASHHSLSKPTQQSGTGVKVNINSATAKELQQ-LHGVGEKKALAIVEYRQQYGKFASV 105 Query: 101 EDLKQVPGMGNSLVERNLAVLTL 123 +DL++V G+G +E+N L + Sbjct: 106 DDLQKVKGIGPKFIEKNRDRLAI 128 >UniRef50_C5RD12 Late competence protein required for DNA binding and uptake n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RD12_WEIPA Length = 226 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 7/123 (5%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEA------PAAQSKAAVPAKASDEEGT 60 L + ++ + + P E E PA + + A + Sbjct: 105 GTLPNVDNVRINLAATLNNGQVLYVPVENEQVPEVYPLPGNPAHKEQHIGQASDQNNSND 164 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 ++++N A + L + + G+G K+AQ I+ RE G FKT+ DL+QV G+G + + Sbjct: 165 KINLNTADSATL-QNLPGIGEKRAQDIIKQRETMGGFKTISDLQQVNGIGEKTFAKLEPL 223 Query: 121 LTL 123 +T+ Sbjct: 224 VTV 226 >UniRef50_Q03F17 DNA uptake protein related DNA-binding protein n=2 Tax=Pediococcus RepID=Q03F17_PEDPA Length = 235 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 19/139 (13%) Query: 2 KHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR 61 K G++ + + +A + ++A + + P G+ Sbjct: 99 KSGMRIM-DAIEIAGGMTKSADQRNINLATQLSDQQVVYVPIKGEIKNSDPSQLSAVGSS 157 Query: 62 -----------------VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLK 104 V+IN AS EL +NGVG KKA+ I++YRE+ G FK++EDLK Sbjct: 158 SISSSSPSTTDSSTEKIVNINTASKAELL-TLNGVGDKKAEQIINYREQQGEFKSIEDLK 216 Query: 105 QVPGMGNSLVERNLAVLTL 123 QV G+G+ + E +T+ Sbjct: 217 QVQGIGDKIFEGLQDAITV 235 >UniRef50_C8WQ77 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQ77_ALIAD Length = 301 Score = 108 bits (270), Expect = 5e-23, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 1/114 (0%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASA 69 + A S ++A + + + K + G +++IN A Sbjct: 175 TAVDAASQPQSGVQDVGLALAAASPSGHEVSTTSRDGTGGRARKHALTAGQKININTADL 234 Query: 70 EELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 E L + GVG K+A AI++YR+ +GPF+ +E L+ V G+G + + ++T Sbjct: 235 ETL-ETLPGVGPKRAAAILAYRQAHGPFRDLESLRHVKGIGEKTLAKWKDLITF 287 >UniRef50_UPI0001C4262A putative S-layer protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4262A Length = 543 Score = 108 bits (270), Expect = 5e-23, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 34 AVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREE 93 VE + S + + ++IN A EEL + + GVG AQ I+ YR+ Sbjct: 454 TVEKQNGNGQPGSDPIIDDPIDESPSYPININTAGFEEL-QHITGVGDVIAQRIIDYRQA 512 Query: 94 YGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 GPF+ + ++K V G+G++ ER +T+ Sbjct: 513 NGPFQAIAEIKNVSGIGDATFERMKDQITV 542 >UniRef50_Q3CZ73 Competence protein CelA (Fragment) n=4 Tax=Streptococcus RepID=Q3CZ73_STRAG Length = 178 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 9/126 (7%) Query: 6 KALLITLSLACAGMSH-SALAAASVAKPTAVETKAEAPAAQSK-------AAVPAKASDE 57 ++ + G+S+ + + ++A+ ET K A Sbjct: 53 QSRVTDAIKRAGGLSNLADSKSVNLAQKLQDETVIYVAQKGEKITVVEEEKANNIATQGN 112 Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 ++++N A L + ++GVG K+AQ I+ YR+ G FKT++DLK V G+G +E+ Sbjct: 113 SKGKINLNKADLSSL-QTISGVGAKRAQDILDYRDSQGGFKTIDDLKNVSGIGEKTLEKL 171 Query: 118 LAVLTL 123 +T+ Sbjct: 172 RQDVTI 177 >UniRef50_C4FZS7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZS7_ABIDE Length = 237 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 15/131 (11%) Query: 7 ALLITLSLACAGMS-HSALAAASVAKPTAVETKAEAPAA-------------QSKAAVPA 52 A ++ + A G++ +A + + AK + P Q + + Sbjct: 108 ARVVDVIKAAGGLTKEAASSGINQAKQLEDGMQVYVPTKKEVSKAGTQIPGLQKEDLQNS 167 Query: 53 KASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNS 112 + + + + ++IN A+ EEL + + GVG KA I++YRE G FK + DL ++ G+ Sbjct: 168 ASVNSQNSAININTATKEELMK-LKGVGEAKAVLIITYRENNGGFKEITDLMKIKGIKQK 226 Query: 113 LVERNLAVLTL 123 ++ + + Sbjct: 227 FFDKIKDNICV 237 >UniRef50_D1BMN5 Competence protein ComEA helix-hairpin-helix repeat protein n=3 Tax=Veillonella RepID=D1BMN5_VEIPT Length = 189 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 5/121 (4%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRV 62 + + LA + ++ + + ++AK G ++ Sbjct: 74 ESSATVGDVVKLAGGLLPYADVESVNMAKSVNAGDHIHIVFNFHG----NPEVLLRGNKI 129 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +IN A+A+EL ++ G+G A+ I YR + GPF ++E +K V G+G+ + ++ +T Sbjct: 130 NINTATAKEL-DSLPGIGPAMAKKIEEYRSQKGPFTSIEGIKGVKGIGDGVFKKIKDKIT 188 Query: 123 L 123 + Sbjct: 189 I 189 >UniRef50_Q8XIJ9 ComE operon protein n=10 Tax=Firmicutes RepID=Q8XIJ9_CLOPE Length = 260 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 23/144 (15%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVET---------------------KA 39 +K+G + + + A + + L+ + A + A Sbjct: 118 LKNGSR-IYELIEEAGGPTNEADLSNINRALYLSDGQCIVIKNINDVESEEVNLNESLNA 176 Query: 40 EAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKT 99 E + + K E + ++IN AS E L +NG+G KAQAI+ YR+E G FK+ Sbjct: 177 EVTNSIPTNSSGDKGEKNESSVININTASKETLM-TLNGIGESKAQAIIDYRDEIGGFKS 235 Query: 100 VEDLKQVPGMGNSLVERNLAVLTL 123 V+D+ V G+G +E+ +++ Sbjct: 236 VDDITNVSGIGEKTLEKIKDKISI 259 >UniRef50_A0R105 DNA-binding protein n=22 Tax=Mycobacterium RepID=A0R105_MYCS2 Length = 292 Score = 108 bits (269), Expect = 7e-23, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 20/135 (14%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKAS------------ 55 + L+ A + + L ++A+ A + A S Sbjct: 159 IADALTAAGGALDGADLIGLNMARRVADGEQIVVGIAAPAGQPTTMGSSVSTAEATGAAE 218 Query: 56 -------DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 + +N A+ E+L A+ GVG A+AIVS+R G F +V+ L +V G Sbjct: 219 PAAGGGGQTASGPLDLNTATVEQL-DALPGVGPVTAEAIVSWRNANGQFASVDQLGEVDG 277 Query: 109 MGNSLVERNLAVLTL 123 +G + +E+ ++ + Sbjct: 278 IGPARLEKLRGLVRV 292 >UniRef50_B7ASY0 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7ASY0_9BACE Length = 213 Score = 108 bits (269), Expect = 7e-23, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 12/127 (9%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE---------- 57 + ++LA + + S+AK P A + Sbjct: 87 VHELIALAGGFAEDAYTLSVSMAKTVTDGQTLYVPHLDEAEDDVAGSRLSGSVTGDDDIY 146 Query: 58 -EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVER 116 + T+++IN AS E+L + G+G +A+ IV YR G FK ED+ +V G+ + + Sbjct: 147 GQKTKININTASVEQLM-TLKGIGESRARDIVDYRTRNGSFKKTEDVMKVSGIKEAAYSK 205 Query: 117 NLAVLTL 123 + + Sbjct: 206 IKDDICV 212 >UniRef50_C4Z9D4 Unspecific high-affinity DNA-binding protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z9D4_EUBR3 Length = 243 Score = 108 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 20/135 (14%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD----------- 56 + + +A + + + ++A P + + Sbjct: 109 VCELVDMAGGMLDTADKSFWNLASELYDGQMLYFPTVEELKSDHIPEGTYTTGIDGSLMK 168 Query: 57 --------EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 + +++IN A+ E+L A++G+G KA++IV R + G F ++ED+ +V G Sbjct: 169 GGAEEHIGVKDGKLNINTATVEQLM-ALSGIGESKAKSIVEDRAKNGLFSSIEDITRVSG 227 Query: 109 MGNSLVERNLAVLTL 123 +G ++ + +T+ Sbjct: 228 IGETMFNKIKDDITV 242 >UniRef50_Q2JDK7 Helix-hairpin-helix DNA-binding, class 1 n=5 Tax=Actinomycetales RepID=Q2JDK7_FRASC Length = 422 Score = 107 bits (268), Expect = 9e-23, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 13/128 (10%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKA------------EAPAAQSKAAVPAKAS 55 ++ + A + + ++A+ + A + + + S Sbjct: 296 VVDAIERAGGVLPGTDTTGLALARLLVDGEQVLVDGKPGPARPGTAAGQPAGTGLGSAGS 355 Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 + +N A+AEEL + GVG A+ IV +R +GPF++ E L +V G+G+ + Sbjct: 356 TAATGPIDLNAATAEEL-DGLPGVGPVLARRIVEWRTAHGPFRSPEQLAEVTGVGDKRLA 414 Query: 116 RNLAVLTL 123 L +L + Sbjct: 415 DLLPLLKV 422 >UniRef50_C8WHN4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WHN4_EGGLE Length = 226 Score = 107 bits (268), Expect = 9e-23, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 12/125 (9%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA-----------AVPAKASDEE 58 + A +A A ++A+ A + P+ + A A+ Sbjct: 102 DAVDAAGGFADGAARDALNLARVLADGEQIVVPSQEEAVLEPGAAVDGGDAGSRAAASPT 161 Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 G ++ +N A+A EL A+ GVG A+ IV+ RE GPF+TVEDLK+V G+G+ Sbjct: 162 GGKIDLNRATAAEL-DALPGVGPSTAEKIVADREANGPFRTVEDLKRVSGIGDKKFADLA 220 Query: 119 AVLTL 123 ++ + Sbjct: 221 DLVCV 225 >UniRef50_Q88LW4 ComEA-related protein n=4 Tax=Pseudomonas RepID=Q88LW4_PSEPK Length = 112 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 15/123 (12%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 M++ + + L+ A S SA A+++A P V A+A A Sbjct: 4 MRNNVLSYLLLPLFASLSFSLSAAPASTMAVPEPVPVVAQAQQAP--------------- 48 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 R+ +N A A L + +NG+G KA+AIV+YRE GPF +V++L ++ G+GN+L+ERN Sbjct: 49 RLDLNTADALTLQKELNGIGKAKAEAIVAYREANGPFASVDELLEIKGIGNALLERNRDK 108 Query: 121 LTL 123 + + Sbjct: 109 VMV 111 >UniRef50_D0LC07 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LC07_GORB4 Length = 286 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 27/142 (19%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT------- 60 + ++ A + + ++A+ + A V A Sbjct: 146 VADAIASAGGARRGADTVSLNLAQLLNDGDQILVGYAGPDGRVLRSAVVAATGSGAPPAN 205 Query: 61 -------------------RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 RV++N A+ ++L A+ GVG A+AI+ +R G F +V+ Sbjct: 206 EPGTTSGAPSAAPSGSSGSRVNLNTATEDQL-DALPGVGPVTARAIIDWRTRNGRFTSVD 264 Query: 102 DLKQVPGMGNSLVERNLAVLTL 123 L +V G+G + + + ++T+ Sbjct: 265 QLGEVDGIGPARLAKLRDLVTV 286 >UniRef50_D0ME87 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0ME87_RHOM4 Length = 131 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 30 AKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVS 89 +P T EA + AA + + E +++N A+AEEL R + +G A+ I+ Sbjct: 40 QQPVPPPTAEEAARFREGAARMRQVLEPE--PLNVNTATAEELER-LPRIGPVLARRIIE 96 Query: 90 YREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 YRE +GPF+ +E+L+ VPG+G + ++ + Sbjct: 97 YREAHGPFRRIEELEAVPGIGPKTLAELAPLIRV 130 >UniRef50_C6WRA2 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WRA2_ACTMD Length = 242 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 + LS A ++L ++A+ + + A V+IN A Sbjct: 134 VADVLSRAGGVKPGASLTGLNLARKVTDGEQIAVGVPPASGGAGPPA------PVNINTA 187 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + E+L A+ GVG AQ IV +R G F +V+ L +V G+G S + + ++ + Sbjct: 188 TVEQL-DALPGVGPVTAQRIVDHRARRGRFTSVQQLGEVEGIGGSKLAKLTDLIRV 242 >UniRef50_B0ADP5 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ADP5_9CLOT Length = 236 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 23/143 (16%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPA---------- 52 K L + ++ ++A E P + Sbjct: 94 SSDKRLADAVEKLGGLTKNADTNNINLAMKLEDEKHYIIPKEGEVIENNSDSTQVTSNKG 153 Query: 53 ------------KASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTV 100 SD +G++++IN A ++L + GVG A I+SYR+E G FK++ Sbjct: 154 NNNQANNSSNNATQSDSQGSKININTADLKQLDD-IPGVGEATANKILSYRDENGEFKSI 212 Query: 101 EDLKQVPGMGNSLVERNLAVLTL 123 E++K V G+G+ E ++ + Sbjct: 213 EEIKNVNGIGDKKFENMKDLICV 235 >UniRef50_Q3K1S5 ComE operon protein 1, putative n=8 Tax=Streptococcus agalactiae RepID=Q3K1S5_STRA1 Length = 217 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 9/126 (7%) Query: 6 KALLITLSLACAGMSH-SALAAASVAKPTAVETKAEAPAAQSK-------AAVPAKASDE 57 ++ + G+S+ + + ++A+ ET K A Sbjct: 92 QSRVTDAIKRAGGLSNLADSKSVNLAQKLQDETVIYVAQKGEKITVVEEEKANNIATQGN 151 Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 ++++N A L + ++GV K+AQ I+ YR+ G FKT++DLK V G+G +E+ Sbjct: 152 SKGKINLNKADLSSL-QTISGVWAKRAQDILDYRDSQGGFKTIDDLKNVSGIGEKTLEKL 210 Query: 118 LAVLTL 123 +T+ Sbjct: 211 RQDVTI 216 >UniRef50_B0TBC6 Competence protein n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TBC6_HELMI Length = 222 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 21/137 (15%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS-------------------- 46 + + + + + + A + P+ Q Sbjct: 86 SRVEDAVRMAEPLPDADVDGINRAASLTDGRQIIVPSRQGGSGEGNNRATAAAGSGQGLI 145 Query: 47 KAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQV 106 K+ + ++IN A A EL R + GVG AQ I+ YRE GPF+ +EDL+ V Sbjct: 146 KSGGSSSKQAGASALININQADAAELDR-LPGVGPSTAQKIIQYRETKGPFQCIEDLQNV 204 Query: 107 PGMGNSLVERNLAVLTL 123 PG+G ++T+ Sbjct: 205 PGIGPKKFADLKEMITV 221 >UniRef50_C8W5N5 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W5N5_DESAS Length = 214 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 24/140 (17%) Query: 7 ALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA---------------------- 44 A + ++ + L A ++A+ + P Sbjct: 75 ARVNDAVQRAKPLAEADLNAINLAELLVDSKPVKVPFQAVPGQAAGNETGAAQADRSAAG 134 Query: 45 -QSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 + + + RV+IN A EL ++ G+G A I+ YR+ G F+TVEDL Sbjct: 135 VKETSGTVQSVGSAQSARVNINTAGEAEL-DSLPGIGPTMAGRIIEYRQASGSFQTVEDL 193 Query: 104 KQVPGMGNSLVERNLAVLTL 123 K V G+G ++T+ Sbjct: 194 KNVSGIGEKKFAALKDLITV 213 >UniRef50_C7Q5D9 Putative DNA-binding protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q5D9_CATAD Length = 385 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 12/112 (10%) Query: 23 ALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT-----------RVSINNASAEE 71 + A +A+P + A + + V V++N A+ E+ Sbjct: 275 DVTALDLARPVTDGEQLRVGIAGAPSPVVGLPQPSSSGAAHGKRGKTTQPVNLNTATLEQ 334 Query: 72 LARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 L + VG AQ I+ +R E+G F++V L+QV G+G+ +T+ Sbjct: 335 L-ETVPAVGPALAQRILDWRTEHGRFESVAQLRQVRGIGDRKFADMRDSVTV 385 >UniRef50_D2AZL0 DNA uptake protein and related DNA-binding protein-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AZL0_STRRD Length = 259 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 3/118 (2%) Query: 7 ALLITLSLACAGMSHSALAA-ASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSIN 65 + + A G+ A ++A+ + A + AA +D + +N Sbjct: 144 SRITDAVQAAGGVRKGAATGPLNLARKLVDGEQI-VVGAPAPAAAAPLMADPAPVVLDLN 202 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ E+L + + GVG A+ IV YR+ +G F+TVE L++V G+G+ + + Sbjct: 203 TATPEQLEQ-LPGVGEVLARRIVEYRDGHGGFRTVEQLREVSGIGDRKYAEIREKVHV 259 >UniRef50_D1Y9S6 ComEA protein n=3 Tax=Propionibacterium acnes RepID=D1Y9S6_PROAC Length = 283 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 23/142 (16%) Query: 4 GIKALLITLSLACAGMSHSALAA-ASVAKPTAVETKAEAPAAQSKAAVPAK--------- 53 A + GM+ A ++A P + P A P Sbjct: 143 NPNARVADAIEVAGGMTAGAHPGRLNLAAPVCDGCQVWIPVGGDGAVTPPNQSAGGSSGA 202 Query: 54 ------------ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 AS V +N A+ EL ++GVG A I+++R+E+G F +V+ Sbjct: 203 VEGSGRSSGVAAASGSGKAPVDLNTANQSEL-ETIDGVGPVMAGKIMAWRQEHGQFASVD 261 Query: 102 DLKQVPGMGNSLVERNLAVLTL 123 L+++ G+G E+ +T+ Sbjct: 262 QLREISGIGAKTFEKIKPYVTV 283 >UniRef50_C6JE10 DNA uptake protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JE10_9FIRM Length = 274 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 26/141 (18%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEA-------------------------P 42 + + A + +AL + A + Sbjct: 134 VFQAIEAAGGYLPEAALTCVNRAGVLTDGQQLYILTQEEMERQGLDPAEMSGASDGQMNG 193 Query: 43 AAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED 102 +A + A ++ R++IN A +L + G+G +AQAI++YREE GPF +ED Sbjct: 194 SAGTGQNTGMNAQVQQDNRININTADEAQLT-TLTGIGATRAQAIIAYREENGPFAAIED 252 Query: 103 LKQVPGMGNSLVERNLAVLTL 123 + V G+ + + + Sbjct: 253 IMNVQGIKEGTFAKIKDEIVV 273 >UniRef50_Q7N0L8 Similar to unknown protein YbaV of Escherichia coli n=2 Tax=Photorhabdus RepID=Q7N0L8_PHOLL Length = 124 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 2 KHGIKALLIT-LSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 K GI ++L+ L AC G A K + + + + EE Sbjct: 3 KSGILSVLLAGLLYACGGQFAIAAEQVKD-KVAKAASTTSHSSPEKQLQQQDALKVEEKG 61 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +V+IN ASAEELARA+NG+G+KKAQ IV YRE++G F VE L++V G+G +ERN + Sbjct: 62 KVNINTASAEELARALNGIGVKKAQGIVEYREKHGAFTAVEQLQEVQGIGPVFIERNRSK 121 Query: 121 LT 122 L+ Sbjct: 122 LS 123 >UniRef50_UPI000185C4E2 DNA-binding protein n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C4E2 Length = 265 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 17/132 (12%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASD----------- 56 ++ + A + + A+ ++A P + A +D Sbjct: 135 VVEAIDRAGGLLPEANPASVNLAAPLVDGQQIVVGTEALPAGTAEGGADVSGGSGAGAAG 194 Query: 57 -----EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 +++IN ASA +L + G+G A I+ +RE+ G F +++ L++VPG+G Sbjct: 195 IAGPGGSDGKININTASATQLEE-LPGIGPATATKIIDFREKNGAFASIDALEEVPGIGP 253 Query: 112 SLVERNLAVLTL 123 + VE T+ Sbjct: 254 AKVEALRDAATV 265 >UniRef50_C7HU15 ComEA family DNA-binding protein n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HU15_9FIRM Length = 212 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 11/131 (8%) Query: 2 KHGIKALLITLSLACAGMSH-SALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE--- 57 + L L G++ + + ++A + + P K ++++ Sbjct: 83 QVNEDYRLEDLVNDAGGLTENADIDKINLALKLEDQMRIIIPNINDKNNDVEVSTNQLIS 142 Query: 58 -----EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNS 112 + +V+IN A +L + +G K+AQAI+ YRE+ F +ED+K V G+G+ Sbjct: 143 PVEKIDDKKVNINKADKAQLM-TLPNIGEKRAQAIIEYREKN-KFNKIEDIKNVSGIGDK 200 Query: 113 LVERNLAVLTL 123 E ++ + Sbjct: 201 YFEAMKDMIVI 211 >UniRef50_C0WQ86 Competence protein ComEA n=3 Tax=Lactobacillus RepID=C0WQ86_LACBU Length = 247 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 59/146 (40%), Gaps = 31/146 (21%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS-------------KAAVPAKA 54 ++ + LA + ++A+ + P + + Sbjct: 103 VVDAIDLAGGFNRSADKKQVNLAQKLTDQQIVYIPIKGEIKGNRSLGATPSQSPSAETSS 162 Query: 55 SDEEGT-----------------RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPF 97 ++ + ++++N A +L + +NG+G KKA I++YR+ +G F Sbjct: 163 TNPQTAATSNAESSSGSSTEGTEKINLNTADKSKL-QELNGIGDKKADQIIAYRQAHGQF 221 Query: 98 KTVEDLKQVPGMGNSLVERNLAVLTL 123 K++E+LK VPG G+ + + + + Sbjct: 222 KSIEELKDVPGFGDKTFDNLKSTICV 247 >UniRef50_Q0SH70 Putative uncharacterized protein n=2 Tax=Rhodococcus RepID=Q0SH70_RHOSR Length = 287 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 14/129 (10%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR------ 61 + L+ A ++A+ + + AA ++A A + Sbjct: 160 VADALAAAGGVRDGGDTLGLNLAQRLSDGDQVLVGAATTQAPPSAVGGASAASPGTAGAA 219 Query: 62 -------VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 V++N A+ EL A+ GVG A AIV++R G F + L +V G+G + Sbjct: 220 AVTGGGLVNLNTATETEL-DALPGVGPVTAAAIVAWRTTNGTFTDISQLGEVDGIGPVRL 278 Query: 115 ERNLAVLTL 123 E+ +TL Sbjct: 279 EKLRGQVTL 287 >UniRef50_Q83MW2 ComE operon protein 1-like protein n=2 Tax=Tropheryma whipplei RepID=Q83MW2_TROWT Length = 193 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 12/113 (10%) Query: 11 TLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAE 70 + A S + ++A+ K D E + V+IN A A+ Sbjct: 93 AIIAAGGFKPLSDTNSVNLAELLRDGQKIVV-----------LPKDSESSPVNINTADAQ 141 Query: 71 ELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 L +++ G+G A+ I+ +R ++GPFK +EDLK++ G+GN L++ + L Sbjct: 142 RL-QSIKGIGKATAKRIIDWRNKHGPFKRLEDLKKISGIGNKLIKSIKDKVIL 193 >UniRef50_D0WEQ0 Competence protein n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WEQ0_9ACTN Length = 258 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 12/128 (9%) Query: 7 ALLITLSLACAGMSHSAL-AAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT----- 60 A + A +G S A+ + ++A + A A P+ AS Sbjct: 132 ARVNDAIAAASGFSDDAIQDSVNLASALTDGQQVRVLAQGEAQANPSAASASGADAAPSA 191 Query: 61 -----RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 V+IN A L R + GVG A+AIV RE+ GPF +V+D+ +V G+G +E Sbjct: 192 SAQSGPVNINTADEAALDR-IPGVGPATARAIVEEREKSGPFSSVDDITRVEGIGKKKLE 250 Query: 116 RNLAVLTL 123 R L + Sbjct: 251 RMRDSLCV 258 >UniRef50_A8SYI0 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYI0_9FIRM Length = 225 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 7/120 (5%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSK------AAVPAKASDEEGTRVS 63 L +A ++ + ++A A K P +A ++ Sbjct: 106 DALEVAGGFAENADIDIVNLADVAADGQKIYFPVEGEDIQSDIGKNQNGQADAGSDRLIN 165 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 IN A EEL + G+G +A IV YR+ YG F EDLK V G+G+S+ + +T+ Sbjct: 166 INEAGVEELTE-LPGIGETRAGQIVEYRQTYGRFSDKEDLKNVSGIGDSIYRKLETYITV 224 >UniRef50_A9WS83 Competence protein n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WS83_RENSM Length = 268 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 14/129 (10%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKA-----------EAPAAQSKAAVPAKASD 56 L + A + L+A ++A A + + PA + AA P ++ Sbjct: 141 LFQAIDAAGGATDLAVLSAVNLAAQLADGEQIFLPTQAQIEAGQVPATTTGAASPNASNS 200 Query: 57 EE--GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 + +V+IN AS ++LA + VG K AQ IV +R ++G F ++DL + G+G L+ Sbjct: 201 SKFPAAKVNINAASVDQLAE-LPKVGPKMAQKIVQWRAQHGKFSAIDDLDAIDGIGPKLL 259 Query: 115 ERNLAVLTL 123 + A++T+ Sbjct: 260 DSLRALVTI 268 >UniRef50_A8U897 Competence protein comEA n=1 Tax=Carnobacterium sp. AT7 RepID=A8U897_9LACT Length = 237 Score = 105 bits (263), Expect = 3e-22, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 23/138 (16%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPA--------------- 52 L+ + LA + +++ + ++ + Sbjct: 98 LIDAIKLAGGFSEKANQNPVNLSLKLTDQMVIFISEVGTEESEETNEAVKEPSAAVIEET 157 Query: 53 -------KASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQ 105 + T+V+IN A A EL + ++G+G KKA+ IV YR+E G F+T+EDLK Sbjct: 158 VITLPKESEGNTNATKVNINLADAIELQQ-LSGIGEKKAEQIVLYRQENGSFQTIEDLKN 216 Query: 106 VPGMGNSLVERNLAVLTL 123 V G+G E A +T+ Sbjct: 217 VSGIGEKTFEALKASVTV 234 >UniRef50_A6LQS8 Competence protein ComEA helix-hairpin-helix repeat protein n=5 Tax=Firmicutes RepID=A6LQS8_CLOB8 Length = 228 Score = 105 bits (263), Expect = 3e-22, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 7/120 (5%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKA------AVPAKASDEEGTRVS 63 + ++ ++ L+ + AK + + D +++ Sbjct: 110 DLIDISGGLTENADLSNINRAKKLQDHELIYISNKNDENKEIQTVNSNSSNKDISDKKIN 169 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 +N+A+ ++L + +NG+G KA+ I+ YRE+ G FK++E++K V G+G+++ ER + + Sbjct: 170 LNSATLDQL-KTLNGIGDSKAKGIIEYREKSGGFKSIEEIKNVSGIGDNMFERIKEQIEV 228 >UniRef50_C0BTC9 Putative uncharacterized protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 RepID=C0BTC9_9BIFI Length = 263 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 20 SHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGV 79 + A++ P+ + E + + PA+ +D ++IN A ++EL + + GV Sbjct: 161 TEKDKTASTQTTPSQQPS-TEPDSQSEPTSGPAEPADPADGLLNINTAGSDEL-QTLKGV 218 Query: 80 GLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 G AQ I+ YR + G F V+ L +V G+G + + + Sbjct: 219 GPVTAQRIIDYRNQIGRFDNVDQLLEVKGIGEKTLAKFRDQVC 261 >UniRef50_B5H760 DNA-binding protein n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H760_STRPR Length = 356 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 4/118 (3%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR---VSI 64 + L A + L+ + A+ + + A A A G +S+ Sbjct: 239 VADALEAAGGVKPGTDLSGLNRARVLSDGEQVVVGGPAPPAPGGAGAGTATGAATGPISL 298 Query: 65 NNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 N+A+ E+L + GVG AQ I+ +R + G F+++++L+ V G+G+ E ++ Sbjct: 299 NSATVEQL-ETLPGVGPVLAQHIIDHRMQNGGFRSIDELRDVNGIGDRRFEDLRNLVR 355 >UniRef50_D1C4G8 Helix-hairpin-helix motif protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4G8_SPHTD Length = 196 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPA--KASDEEGTRVSIN 65 LL +A M+ ++ P ++ A+ +A+ + V++N Sbjct: 78 LLDEADVAGLPMADHLRDGQTLIVPERRAMSSQPVASGDGSAITSAVPVGVAPPGLVNVN 137 Query: 66 NASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 AS EL ++ G+G AQ I++YR +GPF T++DL+ V G+ +VE + T Sbjct: 138 TASQAEL-ESLPGIGPVLAQRIIAYRTTHGPFATLDDLEAVRGISARMVESLRGLAT 193 >UniRef50_D0LIE3 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIE3_HALO1 Length = 158 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 3/111 (2%) Query: 15 ACAGMSHSALAAASVAKPTAVETK-AEAPAAQSKAAVPAKASDEE-GTRVSINNASAEEL 72 A A + + LA+AS + P ++K A APA + AK+ + ++++N ASAE+L Sbjct: 40 AVAASAPAVLASASDSAPQPTQSKRASAPADDGDSGAKAKSGGKSLRGKLNLNTASAEQL 99 Query: 73 ARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + + G+G KA IV YRE++G F+ V DL++V G+G +++ L++ Sbjct: 100 -QLLPGIGAAKAGRIVGYREKHGKFRRVRDLRRVKGIGFKTLQKLSPYLSI 149 >UniRef50_C0EWP2 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EWP2_9FIRM Length = 198 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 10/121 (8%) Query: 12 LSLACAGMSHSALAAA-SVAKPTAVETKAEAPAA--------QSKAAVPAKASDEEGTRV 62 A G S A A ++A+ + P+ + ++ ++ ++ V Sbjct: 78 AIDAAGGFSEKANQTAWNLAEVLQDGMQVYIPSKDEAKEALNEEQSLGKDLSASQKEDTV 137 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +IN AS EEL + G+G +A A+++ REE G F ++E +K G+G+ + R ++T Sbjct: 138 NINTASKEELM-TLPGIGESRADAVIACREEKGSFTSIEGIKDAAGIGDGIFNRIKDLIT 196 Query: 123 L 123 + Sbjct: 197 V 197 >UniRef50_B8GUY5 DNA uptake protein and related DNA-binding protein-like protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GUY5_THISH Length = 136 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 35/102 (34%), Positives = 52/102 (50%) Query: 22 SALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGL 81 + L A S P PA + V+IN A+ EELA A++GVG Sbjct: 35 APLLALSAIAPLHNTATMTRPAGGQDDSTNTGEGSPPQGAVNINTATPEELASAISGVGD 94 Query: 82 KKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A IV+YREE+GPF++V+ L +V G+G + + + LT+ Sbjct: 95 GVAARIVAYREEHGPFESVDHLTRVQGIGKATLAAHKDGLTV 136 >UniRef50_A3N254 DNA uptake protein n=5 Tax=Pasteurellaceae RepID=A3N254_ACTP2 Length = 114 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Query: 16 CAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARA 75 + L+A S+AKP P Q A ++ +V+IN A A E+ Sbjct: 8 SISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTA--DKQNQVNINTADAAEIKSK 65 Query: 76 MNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 + G+G KKAQAIV YR + G F T+E L +V G+G + +E+N +TL Sbjct: 66 LVGIGEKKAQAIVDYRTKNGAFITIEQLTEVSGIGKATLEKNRERITL 113 >UniRef50_D1VKG0 Helix-hairpin-helix motif protein n=1 Tax=Frankia sp. EuI1c RepID=D1VKG0_9ACTO Length = 391 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 8/123 (6%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKAS-------DEEGT 60 + + + + ++A+P + A + Sbjct: 270 VADAIDEVGGVLPGTDTTDLALARPLVDGEQILVDGKPGPAPPGPAGAPAGGAGPTASAG 329 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 V +N+A+ ++L + GVG AQ IV +R+ GPF + + L +VPG+G+ + L + Sbjct: 330 PVHLNSATVDQL-DTLPGVGPVLAQRIVQWRDANGPFTSPDQLGEVPGVGDRRLAELLPL 388 Query: 121 LTL 123 +TL Sbjct: 389 ITL 391 >UniRef50_C6LGL8 Competence protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LGL8_9FIRM Length = 281 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 22/137 (16%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEA---------------------PAAQS 46 + ++ A + ++ LA+ + A K + Sbjct: 145 VCDAVAAAGGLLENADLASLNQAAFLQDAAKIYVYTQEEAAAQGIAAPEPVQNAAGGQEQ 204 Query: 47 KAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQV 106 +++ + T+V+IN A +L + G+G +A+ I++YRE G F++ E++ V Sbjct: 205 APGQQMESAAGQETKVNINTADIAQLC-TLTGIGEARARDIIAYREANGGFQSAEEIMNV 263 Query: 107 PGMGNSLVERNLAVLTL 123 G+ + ++ + + Sbjct: 264 SGIKEATFQKIKDEIAV 280 >UniRef50_C4G962 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4G962_9FIRM Length = 214 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 10/126 (7%) Query: 7 ALLITLSLACAGMS-HSALAAASVAKPTAVETKAEAPAAQS--------KAAVPAKASDE 57 + L L A G + + A P +++ A+ Sbjct: 89 SRLKDLLEAAGGFGRDADTEKVNQAARLEDGAMYRVPRQGEGQNSSEEGQSSENAQTGSG 148 Query: 58 EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 ++V+IN A ++L ++ G+G KA AI++YR + G F ED+ +VPG+ ++ + Sbjct: 149 SSSKVNINRADRDQLM-SLPGIGAGKADAIIAYRRKQGAFARREDIMKVPGLKAAVYAKI 207 Query: 118 LAVLTL 123 +T+ Sbjct: 208 KDRITV 213 >UniRef50_C7RHK1 Competence protein ComEA helix-hairpin-helix repeat protein n=3 Tax=Anaerococcus RepID=C7RHK1_ANAPD Length = 211 Score = 104 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 13/132 (9%) Query: 1 MKHGIKALLITLSLACAGMSHSALAA-ASVAKPTAVETKAEAPAAQSKAAVPAKASD--- 56 +K G + L L G++ A ++A+ + K P + ++ + Sbjct: 84 IKDGDR--LEDLIEEAGGLTDKASEKTLNLAQRLDDQMKIYIPNINEENSLENIDPNQAA 141 Query: 57 -----EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 + ++IN AS EEL + +G K+A+AI+ YR F+ +ED+K V G+G+ Sbjct: 142 NISVSSKSELININTASKEELM-TLPNIGDKRAEAIIEYRSAN-KFENIEDIKNVTGIGD 199 Query: 112 SLVERNLAVLTL 123 E ++T+ Sbjct: 200 KFYEALKDLITI 211 >UniRef50_B9DNI3 Putative uncharacterized protein n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DNI3_STACT Length = 222 Score = 104 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 9/130 (6%) Query: 2 KHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAA--------VPAK 53 + + + + L ++++ + P + Sbjct: 94 EMSDTQRVKDVLSKAIPTEKADLNLINLSEKLVDQKMIYIPEKGKETTIRQASISSGTTS 153 Query: 54 ASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 + +V++N A EL ++ G+G KA+AI+ YRE G F +E LK++ G G+ Sbjct: 154 SISTNQQKVNVNTAKESELT-SITGLGPTKAKAIIEYRENKGSFNKIEQLKEIKGFGDKT 212 Query: 114 VERNLAVLTL 123 E+ LT+ Sbjct: 213 YEKLKDYLTV 222 >UniRef50_A0Q1S7 Competence protein n=3 Tax=Clostridium RepID=A0Q1S7_CLONN Length = 224 Score = 104 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 11/132 (8%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVE---------TKAEAPAAQSKAAVP 51 M +G + + + A + + + + E E+ Q+ Sbjct: 94 MDYGSR-VNDLIEKAEGFTEKADKMSLNCSMKLKDEDCIVVLNKDNPRESNVKQNSVHNV 152 Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 + + ++++IN A+ EEL + + GVG AQ I+ YRE+ G F +V+D+ +V +G Sbjct: 153 TRGTSNNESKININTATKEELMK-LPGVGEVTAQNIIDYREKSGGFNSVDDITKVNRIGT 211 Query: 112 SLVERNLAVLTL 123 + + + + Sbjct: 212 KTLAKFKDKIEV 223 >UniRef50_B5HXE1 DNA-binding protein n=14 Tax=Bacteria RepID=B5HXE1_9ACTO Length = 367 Score = 104 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 9/124 (7%) Query: 7 ALLITLSLACAGM-SHSALAAASVAKPTAVETKAEAPAAQSKA-------AVPAKASDEE 58 + + A G+ + + A+ + + A +V + Sbjct: 244 SRVADALKAAGGVRPGTNTDTLNRARFLVDGEQVVVGGPPAPAPAPGTGGSVTGGPAGTA 303 Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 VS+N A+ ++L + GVG AQ IV YR +G F++V++L++V G+G+ Sbjct: 304 AAPVSLNTATVDQL-DTLPGVGPVLAQHIVDYRTRHGGFRSVDELREVNGIGDRRFADLR 362 Query: 119 AVLT 122 ++ Sbjct: 363 NLVR 366 >UniRef50_B9DUQ8 Putative competence protein n=2 Tax=Streptococcus RepID=B9DUQ8_STRU0 Length = 226 Score = 104 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 10/125 (8%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS---------KAAVPAKASDEE 58 + + +A + A ++A+ + E + + + + Sbjct: 102 VTDAIQIAGGLRDDADPNAINLAQKLSDEAILYVARKGENKSIIDSQGQQSSSIEQGGQR 161 Query: 59 GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNL 118 +V+IN A+ E+L R + G+G K+AQ I+ R+ G FK+++DL + G+G +E+ Sbjct: 162 DQKVNINKATIEDL-RKIPGIGEKRAQEILDARDSKGGFKSIDDLLTISGIGQKTLEKIK 220 Query: 119 AVLTL 123 + + Sbjct: 221 NDIII 225 >UniRef50_Q1AVU6 Competence protein ComEA helix-hairpin-helix region n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVU6_RUBXD Length = 107 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V IN A AEEL + VG A+AI+ YR GPF+TVE+L++VPG+G + +E+ Sbjct: 47 VDINTADAEELEE-LPEVGPATAEAIIEYRLANGPFRTVEELEEVPGIGPATLEQIRPFA 105 Query: 122 TL 123 T+ Sbjct: 106 TV 107 >UniRef50_C2ERZ4 Competence protein comEA n=1 Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2ERZ4_9LACO Length = 215 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 13/132 (9%) Query: 4 GIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSK------------AAVP 51 G + L A + + + AK P + +A Sbjct: 85 GGSRVNEALIAAGHETPDADMNQINRAKQLVDAQVIYVPKKGEQIPSLLSGGGSSISAAN 144 Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 V++N A+ E+L + + G+G KKA I+ YR+E+G F +V+DLK + G G Sbjct: 145 ENNHSGSQEIVNLNTATKEQLCK-ITGIGDKKADLILQYRQEHGSFNSVDDLKNINGFGE 203 Query: 112 SLVERNLAVLTL 123 V + +L + Sbjct: 204 KTVTKLKPMLAV 215 >UniRef50_B7GQM9 Competence protein ComEA helix-hairpin-helix repeat protein n=6 Tax=Bifidobacterium longum RepID=B7GQM9_BIFLI Length = 259 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 13/135 (9%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVA-KPTAVETKAEAPAAQSKAAVPAKAS---- 55 M + + + + + + + ++E A + S Sbjct: 125 MNMAMLSQPTAMQTTGGSAGDQTMPSQNTTDEKRTDPQQSEHSDATANPESDTTQSPHMQ 184 Query: 56 -------DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPG 108 +++N A+AEEL +++ G+G AQ I+ +R G + +V+ L V G Sbjct: 185 TDGSDAGASTHGLINLNTATAEEL-QSIKGIGPVTAQRIIDHRTAIGGYASVDQLLDVKG 243 Query: 109 MGNSLVERNLAVLTL 123 +G+ +E +T+ Sbjct: 244 IGSKTLETMRGQVTV 258 >UniRef50_A8GAR4 Competence protein ComEA helix-hairpin-helix repeat protein n=4 Tax=Enterobacteriaceae RepID=A8GAR4_SERP5 Length = 129 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 50/120 (41%), Positives = 65/120 (54%), Gaps = 5/120 (4%) Query: 3 HGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRV 62 KALL L G S +A A +P AA + A A+ + V Sbjct: 14 FNFKALLTVALLCLTGPSLAAEEKALTGQPV-----LSVTAANAGQGAEAVAAANDEASV 68 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 SIN A AE+LA + GVGLKKA++IV YRE+ GPF +E L++VPG+G +L ERN A L Sbjct: 69 SINQADAEQLASILKGVGLKKAESIVRYREQNGPFTQIEQLQEVPGIGPALFERNRARLK 128 >UniRef50_A3DET3 Competence protein ComEA helix-hairpin-helix repeat protein n=4 Tax=Clostridium RepID=A3DET3_CLOTH Length = 296 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 37 TKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGP 96 TK A + A ++ S ++++IN A+ EEL ++ G+G A IV+YRE+ G Sbjct: 210 TKDSGGAVVGENASSSENSKTANSKININTATVEEL-DSLPGIGPAIAAKIVAYREQNGK 268 Query: 97 FKTVEDLKQVPGMGNSLVERNLAVLTL 123 FK++ED+ V G+G S +T+ Sbjct: 269 FKSIEDIMNVSGIGQSKFNNIKDFITV 295 >UniRef50_D2RL62 Soluble ligand binding domain protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RL62_ACIFE Length = 215 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 28/140 (20%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAP--------------------------A 43 L A + L ++AK ++ P Sbjct: 78 EALEEAGGATKEADLTRVNLAKKCKDGSQVNVPYLKTSIRKRSTGRASADQREPGQDAKG 137 Query: 44 AQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 + A + ++++ R+++N A EEL R + G+G A+ IV YR++ PF+ VEDL Sbjct: 138 GAGETAQNGRGTEKDNRRINLNRAGEEELTR-LPGIGPALARRIVEYRQQ-APFRRVEDL 195 Query: 104 KQVPGMGNSLVERNLAVLTL 123 +QV G+G S +R ++ + Sbjct: 196 QQVSGIGPSKFQRLKPLVEV 215 >UniRef50_B8H8S8 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8S8_ARTCA Length = 274 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 29 VAKPTAVETKAEAPAAQS-----KAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKK 83 + + + E PAA + + S G R++IN A EEL A+ VG Sbjct: 176 DGQKIHIPRQGEQPAAGGAGSLGQGSTAPPGSAGAGARININTAGVEEL-DALPKVGPVL 234 Query: 84 AQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 AQ IV +R+E+GPF VEDL V G+G ++E L ++T+ Sbjct: 235 AQRIVDWRKEHGPFSAVEDLDAVDGVGPKMLEALLPLVTV 274 >UniRef50_A1TBZ2 Competence protein ComEA helix-hairpin-helix repeat protein n=5 Tax=Actinomycetales RepID=A1TBZ2_MYCVP Length = 269 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 2/98 (2%) Query: 26 AASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQ 85 A +PT + + + AA+ AA P + V +N A+AE+L + GVG A Sbjct: 174 GAPAGQPTEMGSSIVSQAAEPGAASPQTPAAS-TGLVDLNTATAEQL-DTLPGVGPVTAA 231 Query: 86 AIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 AI+++R+ G F +VE L V G+G + +++ A++ + Sbjct: 232 AILAWRDANGRFSSVEQLGDVDGIGPARLDKLRALVRV 269 >UniRef50_B4U201 DNA receptor late competence protein ComEA n=4 Tax=Streptococcus dysgalactiae group RepID=B4U201_STREM Length = 225 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 11/132 (8%) Query: 2 KHGIKALLITLSLACAGMSH-SALAAASVAKPTAVETKAEAPA---------AQSKAAVP 51 K + + L G++ + A ++A+ + E S Sbjct: 94 KLAKGSRITDLIELAGGLTEQADKNAINLAEKLSDEKVIYVAKLGENISVIKEPSSETQS 153 Query: 52 AKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGN 111 A A ++ +V +N AS +L + ++G+G K+AQ I+ RE G FK++EDL++VPG+G Sbjct: 154 ASADHQKPEKVHLNRASLADL-QRISGIGAKRAQDIIDVRESLGGFKSLEDLRKVPGIGA 212 Query: 112 SLVERNLAVLTL 123 +E+ ++L Sbjct: 213 KTLEKLKHDISL 224 >UniRef50_C8NQL5 DNA uptake protein n=5 Tax=Corynebacterium RepID=C8NQL5_COREF Length = 237 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 19/123 (15%) Query: 19 MSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT------------------ 60 + L ++A+ + A ++ A + + Sbjct: 116 FPDAELTTLNLAQVLEDGVQIVVVAQGTEPPAAAGSPGVQDPGGTPGMTGITGGGTGEGG 175 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +S+N A+A EL + + GVG K AQAI+ +RE G F V+DL +V G+G S + Sbjct: 176 LISLNTATAAEL-QTLPGVGEKTAQAIIQHREANGGFSAVDDLLEVKGIGPSKFAQISGA 234 Query: 121 LTL 123 +TL Sbjct: 235 VTL 237 >UniRef50_C6IZI4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZI4_9BACL Length = 170 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 1/105 (0%) Query: 17 AGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAM 76 G S + A A A + + A + ++SIN A EL + + Sbjct: 65 GGGSGETVTNADAAGQNAGPSAGAESNSGVAAFKEEAGKSTDTGKISINRAGLAEL-QEI 123 Query: 77 NGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 G+G KKA+AI+ YR +GPF ++E L +V G+G+ ++E+ + Sbjct: 124 PGIGEKKAKAILDYRNAHGPFTSIEALTEVKGIGDKMLEKMKPYI 168 >UniRef50_A0JX55 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Arthrobacter sp. FB24 RepID=A0JX55_ARTS2 Length = 326 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 21/121 (17%) Query: 23 ALAAASVAKPTAVETKAEAPAAQSK--------------------AAVPAKASDEEGTRV 62 L ++A A K P + EG ++ Sbjct: 206 DLNRLNLAAVLADGQKIHVPLVGEPVDAPGAAAGATGPGAAGSGPGDSVPGQTGAEGGKI 265 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +N+ASAEEL A+ VG AQ IV +R+E+G F TVE+L V G+G ++E L ++ Sbjct: 266 DLNSASAEELG-ALPRVGPVLAQRIVDWRKEHGRFSTVEELDAVDGVGPKMLETLLPLVR 324 Query: 123 L 123 + Sbjct: 325 V 325 >UniRef50_UPI0001976DE0 hypothetical protein BbifN4_05079 n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI0001976DE0 Length = 209 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%) Query: 18 GMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMN 77 G + A + + +A A+ + + + + TR+ +N A+AE+L ++ Sbjct: 105 GGAGDAESQGDGVESSAGSQAAQNGRSSQQGSDGSDDGATADTRIDLNTATAEQL-DSIP 163 Query: 78 GVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 GVG AQ I+ +R G F +V+ L V G+G + + + + Sbjct: 164 GVGPVTAQRILDHRRSIGRFTSVDQLLDVSGIGAKTLTKIRPWVRV 209 >UniRef50_D2QAK9 COME operon protein 1 n=4 Tax=Bifidobacterium RepID=D2QAK9_9BIFI Length = 131 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 44 AQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDL 103 A + +D + +N A EEL + + G+G AQ I+ YR ++G F V+ L Sbjct: 52 QPDTARSESTDADPTSDLLDLNTAGLEEL-QTLEGIGPVTAQRILDYRMQFGRFDNVDQL 110 Query: 104 KQVPGMGNSLVERNLAVLTL 123 +V G+G+ + + + + Sbjct: 111 MEVKGIGSKTLAKFRDQVCV 130 >UniRef50_B6XA89 Putative uncharacterized protein n=3 Tax=Providencia RepID=B6XA89_9ENTR Length = 124 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 6/123 (4%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 +K G+ +L+ L +S + A + T++ +Q+ + + Sbjct: 8 IKQGLGTVLMVAILCPLSVSAAVKKAETEKPVTSIMQ------SQNSDEIKSTNHLTSPD 61 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +V+IN ASAEELAR ++G+G +KAQAIV YRE++G F +E++ +V G+G + +E+N Sbjct: 62 QVNINQASAEELARKLSGIGKQKAQAIVEYREKFGAFNAIENILEVQGIGPAFLEKNREK 121 Query: 121 LTL 123 L L Sbjct: 122 LVL 124 >UniRef50_C7NJ59 DNA uptake protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NJ59_KYTSD Length = 305 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 52/136 (38%), Gaps = 20/136 (14%) Query: 7 ALLITLSLACAGMS-HSALAAASVAKPTAVETKAEAPAAQSK------------------ 47 + + A G++ + ++A+P + A + Sbjct: 170 SRVGDAVEAAGGLTGQADEQRLNLARPVTDGEQILALRPGEEPPSPAAAGGPGAPGAGAP 229 Query: 48 AAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVP 107 A + +G + +N A L + GVG A+ I+++R+E G F TV++L +V Sbjct: 230 GAPAGGGAAGDGGPLDLNTADQAALEE-LPGVGPVTAEHILAWRKENGQFTTVDELMEVS 288 Query: 108 GMGNSLVERNLAVLTL 123 G+G + + + Sbjct: 289 GIGEKTLATLRPHVRV 304 >UniRef50_Q04B44 DNA uptake protein related DNA-binding protein n=12 Tax=Lactobacillus RepID=Q04B44_LACDB Length = 248 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 24/145 (16%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEE-- 58 +K+G + L + A + L A + ++ + K K A+ Sbjct: 106 LKNGAR-LEDLIEKAGGLTKDAQLQAINRSQLLKDQDKVYILGKGDKTEAAQTANSAAAS 164 Query: 59 --------------------GTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFK 98 G +++N A+A +L + +NG+G KKA+ I++YR+E G FK Sbjct: 165 SPSASASASSVSSSASGAASGDLINLNTATASDL-QKLNGIGEKKAEQIIAYRQEKGSFK 223 Query: 99 TVEDLKQVPGMGNSLVERNLAVLTL 123 ++++LK+V G+G+ LT+ Sbjct: 224 SIDELKEVSGIGDKTFAAIKDQLTI 248 >UniRef50_D1NTU4 Competence protein n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NTU4_9BIFI Length = 247 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 47 KAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQV 106 + + + + +N A+A++L + +NGVG A IV YR +GPF +V +L V Sbjct: 166 QTQPAESSDSVDEGLIDLNTANADQL-QTINGVGPVMAARIVEYRNAHGPFTSVNELMAV 224 Query: 107 PGMGNSLVERNLAVLTL 123 G+G + + +T+ Sbjct: 225 KGIGAKTLAKIAPFVTV 241 >UniRef50_B6XTW3 Putative uncharacterized protein n=1 Tax=Bifidobacterium catenulatum DSM 16992 RepID=B6XTW3_9BIFI Length = 258 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Query: 15 ACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELAR 74 A A +AA+ + E + + P + SD ++IN A + EL + Sbjct: 153 ASGTTKDGASSAATTPNQ---QPSMEQNGQNKQTSEPTEPSDPADGLLNINTAGSNEL-Q 208 Query: 75 AMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 + GVG AQ I+ YR + G F V+ L +V G+G + + + Sbjct: 209 TLKGVGPVTAQRIIDYRNQIGRFDNVDQLLKVNGIGEKTLAKFRDQVC 256 >UniRef50_C0VPS9 DNA uptake protein n=2 Tax=Acinetobacter RepID=C0VPS9_9GAMM Length = 141 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Query: 42 PAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVE 101 P Q + + + G ++S+N A+ ++L ++++GVG KKAQAI+ YR+++G FK ++ Sbjct: 61 PTQQQNVKPVSSSVNISGDKISLNQANLQQL-QSLSGVGEKKAQAIIEYRQKHGAFKALD 119 Query: 102 DLKQVPGMGNSLVERNLAVLTL 123 +L V G+G L+E+N + L L Sbjct: 120 ELMNVKGIGPKLLEKNRSRLIL 141 >UniRef50_B2V0B5 ComE operon protein 1 n=3 Tax=Clostridium RepID=B2V0B5_CLOBA Length = 204 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 7/128 (5%) Query: 2 KHGIKALLITLSLACAGMSH-SALAAASVAKPTAVETKAEAPAAQS-----KAAVPAKAS 55 + ++++ + G++ + ++ + A+ + Sbjct: 78 ELNDESIVKDVIEISGGLTEEADISNINRAQKLKNHELIYIHNKNEVKENLSYSQNTVTK 137 Query: 56 DEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVE 115 + +++IN A EEL + +NG+G KA+ I+ YRE G F +VED+K + G+G E Sbjct: 138 SDSSGKININCAQLEEL-KNLNGIGEAKAKRIIEYRENIGTFNSVEDIKNIDGIGEKSFE 196 Query: 116 RNLAVLTL 123 + + + Sbjct: 197 KLKEQIEI 204 >UniRef50_B8CXM4 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXM4_HALOH Length = 245 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 29/147 (19%) Query: 5 IKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKA---------- 54 ++ ++ A + A ++A P K PA A Sbjct: 99 DARVIDAVNAAGGTTDEADRHAVNLAAPIYDGEKIVIPAKIKSNKGEDPALLNDITGSKP 158 Query: 55 ------------------SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGP 96 +D+ ++++N +S E+L + + G+G KA++IV YREE G Sbjct: 159 VSVSRSREEVNKNNELLITDKYPEKINLNRSSQEQL-QKLPGIGPSKARSIVKYREENGF 217 Query: 97 FKTVEDLKQVPGMGNSLVERNLAVLTL 123 F L V G+G E+ ++L Sbjct: 218 FTDKAQLLNVSGIGEKTYEKLKDKVSL 244 >UniRef50_B6W833 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W833_9FIRM Length = 208 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 9/122 (7%) Query: 9 LITLSLACAGMSH-SALAAASVAKPTAVETKAEAPAAQSKAAVPA------KASDEEGTR 61 L L G+++ + + ++A + P ++ + E + Sbjct: 88 LEDLVNDAGGLTNNADINRINLAMKLEDQMHIIIPNKNNQENNQTQDQLVTPTNTNENKK 147 Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 ++IN+A L + +G K+A AI+ YR++ F ++D+K V G+G+ E ++ Sbjct: 148 ININSADKNSLM-TLPNIGEKRADAIIEYRQKN-KFNKIDDIKNVSGIGDKYFEAMKDMI 205 Query: 122 TL 123 + Sbjct: 206 VI 207 >UniRef50_B9E6X9 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E6X9_MACCJ Length = 220 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 2/117 (1%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEA-PAAQSKAAVPAKASDEEGTRVSINN 66 +L L +S A + P E K + Q+ + +++IN Sbjct: 105 VLPNADLDAVNLSQEVRDALVIYIPFKGEVKTDKYTLYQNAGGYEGNSGSNVQKKININQ 164 Query: 67 ASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A EL + G+G KKAQ I+ YR + FK +E++K++ G+G+ + E + + Sbjct: 165 AEQSELEE-IPGIGPKKAQDIIKYRTDNKGFKAIEEIKEIRGVGDKIYEGLKDYIEV 220 >UniRef50_A3TJH6 Putative DNA-binding protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TJH6_9MICO Length = 258 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 21/134 (15%) Query: 10 ITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS--------------------KAA 49 ++ A + L A ++A+ + P A Sbjct: 126 DAVTAAGGATRTADLGAVNLARVLVDGEQIIVPKPGEVVTPPGAAGPGAGAGSATGSGRA 185 Query: 50 VPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGM 109 + + G VS+N+A L + GVG AQ I+ +R E+G F +VE+L +V G+ Sbjct: 186 GGSSGAGSAGGTVSLNSADLSAL-DTLPGVGPVLAQRILDWRTEHGRFTSVEELGEVSGI 244 Query: 110 GNSLVERNLAVLTL 123 G L+ + +TL Sbjct: 245 GEKLLAQLTPKVTL 258 >UniRef50_C6CQU2 Competence protein ComEA helix-hairpin-helix repeat protein n=8 Tax=Enterobacteriaceae RepID=C6CQU2_DICZE Length = 130 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 7/130 (5%) Query: 1 MKH-GIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDE-- 57 MK+ GIKAL + ++ G+S A+ + P A + S +A Sbjct: 1 MKNSGIKALCFIVGMSLTGVSTWLHASPTTPAPDKTSVTAAKSPSSSPSADSKVEKAAKP 60 Query: 58 ----EGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSL 113 + VSIN A+AE+LA +NGVGLKKAQAIVSYRE+ GPF +E L++VPG+G++L Sbjct: 61 LVAADEEEVSINTATAEQLATVLNGVGLKKAQAIVSYREQNGPFTQIEQLQEVPGIGSAL 120 Query: 114 VERNLAVLTL 123 +ERN + L L Sbjct: 121 IERNQSRLRL 130 >UniRef50_Q4ZQA5 Competence protein ComEA helix-hairpin-helix region n=10 Tax=Pseudomonas RepID=Q4ZQA5_PSEU2 Length = 120 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNA 67 + L A + + AA ++P E A PA A ++ RV++N A Sbjct: 5 IFSALIFALLTSASVVVNAAPASQPAMSEPAVSHSPMLEGTA-PAMAHEQRKDRVNLNTA 63 Query: 68 SAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 A+ L + + G+G KA AIV+YRE G F ++++L +V G+G +++ERN L + Sbjct: 64 DAQTLQKELAGIGKNKADAIVAYREANGDFTSIDELIEVKGIGKAILERNREKLAI 119 >UniRef50_B1VY20 Putative DNA-binding protein n=1 Tax=Streptomyces griseus subsp. griseus NBRC 13350 RepID=B1VY20_STRGG Length = 332 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 11/125 (8%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTR------ 61 + L A + + + + A+ + G Sbjct: 208 VADALDAAGGVRAGTDVTGLNRARVLMDGEQVVVGLPLGPPVSTTAGGGSAGAGGPGGPG 267 Query: 62 ----VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERN 117 +S+N A+AE+L + GVG AQ ++ YR E F++V++L++V G+G+ Sbjct: 268 PSAPLSLNTATAEQL-ETLPGVGPVLAQHMIDYRTENNGFRSVDELREVNGIGDRRFADI 326 Query: 118 LAVLT 122 ++ Sbjct: 327 HPLVR 331 >UniRef50_C7GEH7 ComE operon protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEH7_9FIRM Length = 219 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 14/129 (10%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKA-------------EAPAAQSKAAVPAKA 54 L + A +A + + A+ E +++ V + Sbjct: 91 LYEVIEAAGGLTEDAAEESVNQAREIVDGEMVRILTQEEAAKDGLEEAGERTETGVDGET 150 Query: 55 SDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLV 114 + + R+ +N A+A EL ++G+G KA +I+ YRE+ G F +VE++KQV G+ + Sbjct: 151 AQDSDGRIDLNLATAAELM-TLSGIGQTKADSIIRYREKNGSFSSVEEIKQVEGIKEGVY 209 Query: 115 ERNLAVLTL 123 R + + Sbjct: 210 NRIKDHIKV 218 >UniRef50_B7H014 ComE1 n=11 Tax=Acinetobacter RepID=B7H014_ACIB3 Length = 136 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 15/137 (10%) Query: 1 MKHGIKAL---LITLSLACAGMSHSALAAAS---------VAKPTAVETKAEAPAAQSKA 48 M++ I+ L + C G+ ++ A S + + ++ S Sbjct: 1 MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNG 60 Query: 49 AVPAKASD--EEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQV 106 + ++ + + ++ +N A+ E + + G+G KKAQAIV YR++ G FK ++++K V Sbjct: 61 SKISQTKNFNDSTGQIHLNQANVNEFQQ-LKGIGEKKAQAIVEYRQKNGSFKNIDEIKNV 119 Query: 107 PGMGNSLVERNLAVLTL 123 G+G ++ E+N + L L Sbjct: 120 KGIGPAIFEKNKSRLAL 136 >UniRef50_C0WJQ2 Possible competence protein EA n=4 Tax=Corynebacterium RepID=C0WJQ2_9CORY Length = 225 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 5/110 (4%) Query: 18 GMSHSALAAASVAKPTAVETKAEAPAAQSKA----AVPAKASDEEGTRVSINNASAEELA 73 + + + A+ A + + A A+ G +VS+N+A+A EL Sbjct: 117 PLPEAETMTLNQAQRLADGQQLHVLPQGAPPDPALADAPSAAPSGGDKVSLNSATAAELT 176 Query: 74 RAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 ++GVG A+AIVS+REE G FK VE+L +V G+G + + + L Sbjct: 177 D-LSGVGEVTAEAIVSFREERGGFKDVEELLEVSGIGPAKFAKLKDDVQL 225 >UniRef50_D2RBH1 ComEA protein n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBH1_GARVA Length = 262 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 48/103 (46%), Gaps = 1/103 (0%) Query: 21 HSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGVG 80 + +K K ++ ++ + R++IN A+ ++L + + G+G Sbjct: 160 DDVSKGNNGSKSNNKSNKGDSNNKSDRSNENTASHQSNTGRININTATLDQL-QTLKGIG 218 Query: 81 LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 K A I++ R+ G F+++EDL Q+ G+G + + + + Sbjct: 219 PKTAARIIAQRKRVGYFRSLEDLMQIKGIGPKTLNKFRGNVDV 261 >UniRef50_B2A1F6 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1F6_NATTJ Length = 207 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 5/118 (4%) Query: 8 LLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQS----KAAVPAKASDEEGTRVS 63 + + LA + S L ++A P ++ + + T+++ Sbjct: 89 VYQLIELAGGELEDSLLELLNLASPLEDGQHIHIYREGDDIDYESQLVPDNKSQGDTKIN 148 Query: 64 INNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 IN A L ++ G+G +A++I+ +RE+ G F ++E + V G+G + + ++ Sbjct: 149 INTADI-TLLESLPGIGPVRAESIIKHREKVGEFTSIEQIMDVNGIGPGIFNQIKELI 205 >UniRef50_C1XFW6 Helix-hairpin-helix protein n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XFW6_MEIRU Length = 116 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 1 MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGT 60 MK + I + L S A P T P ++ + + + E Sbjct: 1 MKLWLNIAYILVVLGLGLASLWPNLTVRFA-PAQFYTP-STPGLEATSTLRPGPALPEVQ 58 Query: 61 RVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAV 120 +V++N AS E+ ++ G+G AQ I+ R P++T+EDL++V G+G L+ER + Sbjct: 59 KVNLNTASQAEI-ESLPGIGPALAQRIIEGR----PYRTLEDLERVKGIGPKLLERLRPL 113 Query: 121 LTL 123 +TL Sbjct: 114 VTL 116 >UniRef50_Q9RIA7 ComEA protein (Fragment) n=4 Tax=Neisseria RepID=Q9RIA7_NEIME Length = 170 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN AS +EL A+ G+G KA+AI YR + G FK+V+DL +V G+G +++ + Sbjct: 92 VNINAASQQEL-EALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQA 150 Query: 122 TL 123 ++ Sbjct: 151 SV 152 >UniRef50_B2K6W2 Competence protein ComEA helix-hairpin-helix repeat protein n=30 Tax=Yersinia RepID=B2K6W2_YERPB Length = 148 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 40/104 (38%), Positives = 60/104 (57%) Query: 20 SHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRVSINNASAEELARAMNGV 79 S + A P K A ASD + +++IN+A+AE+LA+ +NG+ Sbjct: 45 SAADNGAKVKGTPAQSVEKISDNTKNVAADSSVNASDNQQHQININSANAEQLAQFLNGI 104 Query: 80 GLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLTL 123 G KKA+AI++YRE+ GPF V+ L +VPG+G S +ERN + L Sbjct: 105 GRKKAEAIITYREQSGPFTHVDQLLEVPGLGPSFLERNNGKIKL 148 >UniRef50_B5EQJ4 Competence protein ComEA helix-hairpin-helix repeat protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EQJ4_ACIF5 Length = 135 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Query: 62 VSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVL 121 V+IN A A L A+ G+G KAQA++ YR+ +GPF++V++L V G+G L+ER VL Sbjct: 24 VNINTADATAL-DALPGIGPAKAQAVLEYRQAHGPFRSVDELTSVHGIGPRLLERLRPVL 82 Query: 122 TL 123 +L Sbjct: 83 SL 84 >UniRef50_B1YKR9 Competence protein ComEA helix-hairpin-helix repeat protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YKR9_EXIS2 Length = 205 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 7/121 (5%) Query: 9 LITLSLACAGMSHSALAAASVAKPTAVETKAEAPA------AQSKAAVPAKASDEEGTRV 62 + + + + ++A + P ++ A ++ ++ + Sbjct: 85 VQDAIKRAEVTAEADIKQLNLAARLIDGQEVIVPTRKKAKSSKKAAPETSEQAEIPKGLL 144 Query: 63 SINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLVERNLAVLT 122 +N A+ E+L + G+G KA AI+ YREE G F T E+L V G G +E A L Sbjct: 145 DLNAATEEQLLE-VPGIGPAKAGAILQYREEKGGFATYENLGDVKGFGPKTLENLKAYLI 203 Query: 123 L 123 + Sbjct: 204 V 204 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.150 0.426 Lambda K H 0.267 0.0459 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 726,794,973 Number of Sequences: 3077464 Number of extensions: 35240081 Number of successful extensions: 114825 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1692 Number of HSP's successfully gapped in prelim test: 705 Number of HSP's that attempted gapping in prelim test: 110109 Number of HSP's gapped (non-prelim): 2952 length of query: 123 length of database: 1,040,396,356 effective HSP length: 89 effective length of query: 34 effective length of database: 766,502,060 effective search space: 26061070040 effective search space used: 26061070040 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.3 bits) S2: 87 (38.0 bits)