Phyre 2 Results for P0A9D8

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0A9D8
Date | Thu Jan 5 11:09:57 GMT 2012
Unique Job ID | fee98ea6473b6cec

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d3tdta_
Top template information
Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
Confidence and coverage
Confidence: | 100.0% | Coverage: | 100%
274 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | Q | Q | L | Q | N | I | I | E | T | A | F | E | R | R | A | E | I | T | P | A | N | A | D | T | V | T | R | E | A | V | N | Q | V | I | A | L | L | D | S | G | A | L | R | V | A | E | K | I | D | G | Q | W | V | T | H | Q | W | L | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | K | A | V | L | L | S | F | R | I | N | D | N | Q | V | I | E | G | A | E | S | R | Y | F | D | K | V | P | M | K | F | A | D | Y | D | E | A | R | F | Q | K | E | G | F | R | V | V | P | P | A | A | V | R | Q | G | A | F | I | A | R | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | T | V | L | M | P | S | Y | V | N | I | G | A | Y | V | D | E | G | T | M | V | D | T | W | A | T | V | G | S | C | A | Q | I | G | K | N | V | H | L | S | G | G | V | G | I | G | G | V | L | E | P | L | Q | A | N | P | T | I | I | E | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | N | C | F | I | G | A | R | S | E | V | V | E | G | V | I | V | E | E | G | S | V | I | S | M | G | V | Y | I | G | Q | S | T | R | I | Y | D | R | E | T | G | E | I | H | Y | G | R | V | P | A | G | S | V | V | V | S | G | N | L | P | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | .
Sequence |  | K | D | G | K | Y | S | L | Y | C | A | V | I | V | K | K | V | D | A | K | T | R | G | K | V | G | I | N | E | L | L | R | T | I | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d3tdta_ |

### PDB 3tdt chain A

Region: 1 - 274
Aligned: 274
Modelled: 274
Confidence: 100.0%
Identity: 95%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD

Phyre2
2 |
| c3eg4A_ |

### PDB 3eg4 chain A

Region: 1 - 272
Aligned: 271
Modelled: 272
Confidence: 100.0%
Identity: 64%
PDB header:transferase
Chain: A: PDB Molecule:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-
PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase from brucella melitensis3 biovar abortus 2308

Phyre2
3 |
| c2iu9C_ |

### PDB 2iu9 chain C

Region: 12 - 274
Aligned: 238
Modelled: 248
Confidence: 100.0%
Identity: 13%
PDB header:transferase
Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine
PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii)

Phyre2
4 |
| c2rijA_ |

### PDB 2rij chain A

Region: 89 - 220
Aligned: 128
Modelled: 130
Confidence: 100.0%
Identity: 26%
PDB header:transferase
Chain: A: PDB Molecule:putative 2,3,4,5-tetrahydropyridine-2-carboxylate n-
PDBTitle: crystal structure of a putative 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase (cj1605c, dapd) from campylobacter3 jejuni at 1.90 a resolution

Phyre2
5 |
| c3eh0C_ |

### PDB 3eh0 chain C

Region: 33 - 274
Aligned: 226
Modelled: 227
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-
PDBTitle: crystal structure of lpxd from escherichia coli

Phyre2
6 |
| c3pmoA_ |

### PDB 3pmo chain A

Region: 32 - 273
Aligned: 234
Modelled: 242
Confidence: 100.0%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase;
PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution

Phyre2
7 |
| c3fsyC_ |

### PDB 3fsy chain C

Region: 89 - 255
Aligned: 141
Modelled: 144
Confidence: 100.0%
Identity: 26%
PDB header:transferase
Chain: C: PDB Molecule:tetrahydrodipicolinate n-succinyltransferase;
PDBTitle: structure of tetrahydrodipicolinate n-succinyltransferase2 (rv1201c;dapd) in complex with succinyl-coa from mycobacterium3 tuberculosis

Phyre2
8 |
| c3cj8B_ |

### PDB 3cj8 chain B

Region: 88 - 232
Aligned: 139
Modelled: 145
Confidence: 99.9%
Identity: 33%
PDB header:transferase
Chain: B: PDB Molecule:2,3,4,5-tetrahydropyridine-2-carboxylate n-
PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate n-2 succinyltransferase from enterococcus faecalis v583

Phyre2
9 |
| d1t3da_ |

### PDB 1t3d chain A

Region: 49 - 237
Aligned: 162
Modelled: 168
Confidence: 99.9%
Identity: 19%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: Serine acetyltransferase

Phyre2
10 |
| d1ssqa_ |

### PDB 1ssq chain A

Region: 2 - 232
Aligned: 189
Modelled: 196
Confidence: 99.9%
Identity: 19%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: Serine acetyltransferase

Phyre2
11 |
| c1t3dB_ |

### PDB 1t3d chain B

Region: 49 - 237
Aligned: 162
Modelled: 168
Confidence: 99.9%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:serine acetyltransferase;
PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a

Phyre2
12 |
| d2jf2a1 |

### PDB 2jf2 chain A domain 1

Region: 63 - 274
Aligned: 198
Modelled: 212
Confidence: 99.9%
Identity: 18%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: UDP N-acetylglucosamine acyltransferase

Phyre2
13 |
| c3i3aC_ |

### PDB 3i3a chain C

Region: 47 - 274
Aligned: 212
Modelled: 220
Confidence: 99.9%
Identity: 14%
PDB header:transferase
Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-
PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa

Phyre2
14 |
| d1j2za_ |

### PDB 1j2z chain A

Region: 68 - 274
Aligned: 178
Modelled: 192
Confidence: 99.9%
Identity: 21%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: UDP N-acetylglucosamine acyltransferase

Phyre2
15 |
| c3r0sA_ |

### PDB 3r0s chain A

Region: 68 - 273
Aligned: 177
Modelled: 192
Confidence: 99.9%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni

Phyre2
16 |
| c3q1xA_ |

### PDB 3q1x chain A

Region: 2 - 219
Aligned: 204
Modelled: 208
Confidence: 99.9%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:serine acetyltransferase;
PDBTitle: crystal structure of entamoeba histolytica serine acetyltransferase 12 in complex with l-serine

Phyre2
17 |
| c3f1xA_ |

### PDB 3f1x chain A

Region: 49 - 221
Aligned: 162
Modelled: 173
Confidence: 99.9%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:serine acetyltransferase;
PDBTitle: three dimensional structure of the serine acetyltransferase from2 bacteroides vulgatus, northeast structural genomics consortium target3 bvr62.

Phyre2
18 |
| c3mc4A_ |

### PDB 3mc4 chain A

Region: 49 - 236
Aligned: 155
Modelled: 167
Confidence: 99.9%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:ww/rsp5/wwp domain:bacterial transferase
PDBTitle: crystal structure of ww/rsp5/wwp domain: bacterial2 transferase hexapeptide repeat: serine o-acetyltransferase3 from brucella melitensis

Phyre2
19 |
| c2v0hA_ |

### PDB 2v0h chain A

Region: 3 - 220
Aligned: 206
Modelled: 218
Confidence: 99.9%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu)

Phyre2
20 |
| d3bswa1 |

### PDB 3bsw chain A domain 1

Region: 102 - 232
Aligned: 117
Modelled: 125
Confidence: 99.9%
Identity: 24%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: PglD-like

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d3tdta_ |
|  | 100.0 | 95 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
2 | c3eg4A_ |
|  | 100.0 | 64 | PDB header:transferase Chain: A: PDB Molecule:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase from brucella melitensis3 biovar abortus 2308
3 | c2iu9C_ |
|  | 100.0 | 13 | PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii)
4 | c2rijA_ |
|  | 100.0 | 26 | PDB header:transferase Chain: A: PDB Molecule:putative 2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of a putative 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase (cj1605c, dapd) from campylobacter3 jejuni at 1.90 a resolution
5 | c3eh0C_ |
|  | 100.0 | 15 | PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli
6 | c3pmoA_ |
|  | 100.0 | 13 | PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution
7 | c3fsyC_ |
|  | 100.0 | 26 | PDB header:transferase Chain: C: PDB Molecule:tetrahydrodipicolinate n-succinyltransferase; PDBTitle: structure of tetrahydrodipicolinate n-succinyltransferase2 (rv1201c;dapd) in complex with succinyl-coa from mycobacterium3 tuberculosis
8 | c3cj8B_ |
|  | 99.9 | 33 | PDB header:transferase Chain: B: PDB Molecule:2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate n-2 succinyltransferase from enterococcus faecalis v583
9 | d1t3da_ |
|  | 99.9 | 19 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase
10 | d1ssqa_ |
|  | 99.9 | 19 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase
11 | c1t3dB_ |
|  | 99.9 | 19 | PDB header:transferase Chain: B: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a
12 | d2jf2a1 |
|  | 99.9 | 18 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase
13 | c3i3aC_ |
|  | 99.9 | 14 | PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa
14 | d1j2za_ |
|  | 99.9 | 21 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase
15 | c3r0sA_ |
|  | 99.9 | 18 | PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni
16 | c3q1xA_ |
|  | 99.9 | 13 | PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of entamoeba histolytica serine acetyltransferase 12 in complex with l-serine
17 | c3f1xA_ |
|  | 99.9 | 17 | PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: three dimensional structure of the serine acetyltransferase from2 bacteroides vulgatus, northeast structural genomics consortium target3 bvr62.
18 | c3mc4A_ |
|  | 99.9 | 22 | PDB header:transferase Chain: A: PDB Molecule:ww/rsp5/wwp domain:bacterial transferase PDBTitle: crystal structure of ww/rsp5/wwp domain: bacterial2 transferase hexapeptide repeat: serine o-acetyltransferase3 from brucella melitensis
19 | c2v0hA_ |
|  | 99.9 | 18 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu)
20 | d3bswa1 |
|  | 99.9 | 24 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:PglD-like
21 | c3mqhD_ |
| not modelled | 99.9 | 17 | PDB header:transferase Chain: D: PDB Molecule:lipopolysaccharides biosynthesis acetyltransferase; PDBTitle: crystal structure of the 3-n-acetyl transferase wlbb from bordetella2 petrii in complex with coa and udp-3-amino-2-acetamido-2,3-dideoxy3 glucuronic acid
22 | c3c8vA_ |
| not modelled | 99.9 | 19 | PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_390128.1) from2 desulfovibrio desulfuricans g20 at 2.28 a resolution
23 | c1hm8A_ |
| not modelled | 99.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a
24 | c3fsbB_ |
| not modelled | 99.9 | 18 | PDB header:transferase Chain: B: PDB Molecule:qdtc; PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose
25 | c3jqyB_ |
| not modelled | 99.9 | 15 | PDB header:transferase Chain: B: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystal strucutre of the polysia specific acetyltransferase neuo
26 | c3srtB_ |
| not modelled | 99.9 | 18 | PDB header:transferase Chain: B: PDB Molecule:maltose o-acetyltransferase; PDBTitle: the crystal structure of a maltose o-acetyltransferase from2 clostridium difficile 630
27 | c3fttA_ |
| not modelled | 99.9 | 22 | PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase sacol2570; PDBTitle: crystal structure of the galactoside o-acetyltransferase2 from staphylococcus aureus
28 | d1mr7a_ |
| not modelled | 99.9 | 20 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like
29 | d1krra_ |
| not modelled | 99.9 | 19 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like
30 | c2oi6A_ |
| not modelled | 99.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4
31 | c3ectA_ |
| not modelled | 99.9 | 18 | PDB header:transferase Chain: A: PDB Molecule:hexapeptide-repeat containing-acetyltransferase; PDBTitle: crystal structure of the hexapeptide-repeat containing-2 acetyltransferase vca0836 from vibrio cholerae
32 | c2ic7A_ |
| not modelled | 99.9 | 17 | PDB header:transferase Chain: A: PDB Molecule:maltose transacetylase; PDBTitle: crystal structure of maltose transacetylase from2 geobacillus kaustophilus
33 | d1g97a1 |
| not modelled | 99.8 | 21 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like
34 | d2oi6a1 |
| not modelled | 99.8 | 17 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like
35 | c3r3rA_ |
| not modelled | 99.8 | 20 | PDB header:transferase Chain: A: PDB Molecule:ferripyochelin binding protein; PDBTitle: structure of the yrda ferripyochelin binding protein from salmonella2 enterica
36 | c2wlgA_ |
| not modelled | 99.8 | 18 | PDB header:transferase Chain: A: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy
37 | d1v3wa_ |
| not modelled | 99.8 | 19 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like
38 | d1ocxa_ |
| not modelled | 99.8 | 18 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like
39 | d1xhda_ |
| not modelled | 99.8 | 14 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like
40 | c3ixcA_ |
| not modelled | 99.8 | 20 | PDB header:transferase Chain: A: PDB Molecule:hexapeptide transferase family protein; PDBTitle: crystal structure of hexapeptide transferase family protein from2 anaplasma phagocytophilum
41 | c2ggqA_ |
| not modelled | 99.8 | 14 | PDB header:transferase Chain: A: PDB Molecule:401aa long hypothetical glucose-1-phosphate PDBTitle: complex of hypothetical glucose-1-phosphate thymidylyltransferase from2 sulfolobus tokodaii
42 | c1qreA_ |
| not modelled | 99.8 | 17 | PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: a closer look at the active site of gamma-carbonic anhydrases: high2 resolution crystallographic studies of the carbonic anhydrase from3 methanosarcina thermophila
43 | d1qrea_ |
| not modelled | 99.8 | 17 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like
44 | d1xata_ |
| not modelled | 99.8 | 21 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like
45 | d2f9ca1 |
| not modelled | 99.8 | 12 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:YdcK-like
46 | c3r1wA_ |
| not modelled | 99.7 | 18 | PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of a carbonic anhydrase from a crude oil degrading2 psychrophilic library
47 | c2qkxA_ |
| not modelled | 99.7 | 18 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate
48 | c3d98A_ |
| not modelled | 99.7 | 19 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form
49 | c3eevC_ |
| not modelled | 99.7 | 12 | PDB header:transferase Chain: C: PDB Molecule:chloramphenicol acetyltransferase; PDBTitle: crystal structure of chloramphenicol acetyltransferase vca0300 from2 vibrio cholerae o1 biovar eltor
50 | c3kwdA_ |
| not modelled | 99.7 | 16 | PDB header:lyase, protein binding, photosynthesis Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein; PDBTitle: inactive truncation of the beta-carboxysomal gamma-carbonic anhydrase,2 ccmm, form 1
51 | d1yp2a1 |
| not modelled | 99.6 | 14 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like
52 | c1yp3C_ |
| not modelled | 99.5 | 15 | PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp
53 | c3brkX_ |
| not modelled | 99.4 | 13 | PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens
54 | d1fxja1 |
| not modelled | 99.3 | 20 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like
55 | c1fwyA_ |
| not modelled | 99.2 | 20 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac
56 | c3cqxD_ |
| not modelled | 6.1 | 32 | PDB header:chaperone Chain: D: PDB Molecule:bag family molecular chaperone regulator 2; PDBTitle: chaperone complex
57 | d1nu9c2 |
| not modelled | 5.7 | 28 | Fold:immunoglobulin/albumin-binding domain-like Superfamily:Staphylocoagulase Family:Staphylocoagulase

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0