BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (901 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A8GKU0 HTH-type transcriptional regulator malT n=171 Ta... 1443 0.0 UniRef50_A7N5N6 HTH-type transcriptional regulator malT n=66 Tax... 850 0.0 UniRef50_Q2SPN4 Maltose regulon positive regulatory protein MalT... 594 e-168 UniRef50_A4VQ60 ATP-dependent transcriptional regulator n=4 Tax=... 529 e-148 UniRef50_Q2SEA9 ATP-dependent transcriptional regulator n=1 Tax=... 404 e-110 UniRef50_UPI0001914156 transcriptional regulator MalT n=4 Tax=Sa... 347 2e-93 UniRef50_A7NS05 ATP-dependent transcriptional regulator, MalT-li... 284 1e-74 UniRef50_C0Z8V4 Probable transcriptional regulator n=2 Tax=Bacil... 276 2e-72 UniRef50_B8CZU7 Regulatory protein LuxR n=3 Tax=Firmicutes RepID... 276 3e-72 UniRef50_A1U0Z9 Regulatory protein, LuxR n=2 Tax=Marinobacter Re... 266 2e-69 UniRef50_A4BAG8 ATP-dependent transcriptional regulator n=1 Tax=... 263 2e-68 UniRef50_B0C3T1 Transcriptional regulator, LuxR family with TPR ... 251 9e-65 UniRef50_A9WHL2 Regulatory protein LuxR n=3 Tax=Chloroflexaceae ... 249 3e-64 UniRef50_Q396V4 ATP-dependent transcriptional regulator, MalT-li... 230 2e-58 UniRef50_A9B4I5 ATP-dependent transcriptional regulator, MalT-li... 229 3e-58 UniRef50_Q0K1J2 Transcriptional regulator, LuxR-family n=1 Tax=R... 229 5e-58 UniRef50_A9AVE7 ATP-dependent transcriptional regulator, MalT-li... 229 5e-58 UniRef50_A0R0L7 Transcriptional regulator n=1 Tax=Mycobacterium ... 226 4e-57 UniRef50_C5RKV5 ATP-dependent transcriptional regulator, MalT-li... 224 1e-56 UniRef50_D1RTE8 Transcriptional regulatory protein n=1 Tax=Serra... 224 2e-56 UniRef50_C8X673 ATP-dependent transcriptional regulator, MalT-li... 222 5e-56 UniRef50_C4X459 Trans-acting regulatory protein of aco operon n=... 221 7e-56 UniRef50_C6CXC3 ATP-dependent transcriptional regulator, MalT-li... 218 6e-55 UniRef50_C0Z6I1 Probable transcriptional regulator n=1 Tax=Brevi... 211 1e-52 UniRef50_Q2JAS8 ATP-dependent transcriptional regulator, MalT-li... 210 2e-52 UniRef50_B8G442 ATP-dependent transcriptional regulator, MalT-li... 209 3e-52 UniRef50_Q1D1L7 Transcriptional regulator, LuxR family n=1 Tax=M... 209 3e-52 UniRef50_Q46V70 Regulatory protein, LuxR:Tetratricopeptide TPR_4... 208 7e-52 UniRef50_C1DE28 Transcriptional regulatory protein AcoK, LuxR fa... 202 7e-50 UniRef50_A9B6R2 ATP-dependent transcriptional regulator, MalT-li... 201 1e-49 UniRef50_A3TJL4 Regulatory protein, LuxR n=1 Tax=Janibacter sp. ... 201 1e-49 UniRef50_A7NKK5 ATP-dependent transcriptional regulator, MalT-li... 201 1e-49 UniRef50_C0ZJP0 Probable transcriptional regulator n=1 Tax=Brevi... 199 4e-49 UniRef50_UPI0001910BD3 transcriptional regulator MalT n=2 Tax=Sa... 194 1e-47 UniRef50_C8XKI9 ATP-dependent transcriptional regulator, MalT-li... 188 7e-46 UniRef50_Q390G0 ATP-dependent transcriptional regulator, MalT-li... 187 2e-45 UniRef50_C7RL93 ATP-dependent transcriptional regulator, MalT-li... 186 2e-45 UniRef50_C6D3K4 ATP-dependent transcriptional regulator, MalT-li... 184 1e-44 UniRef50_Q21ZR3 ATP-dependent transcriptional regulator, MalT-li... 182 4e-44 UniRef50_A5V4S7 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 182 4e-44 UniRef50_C1AXQ0 Putative serine/threonine protein kinase n=2 Tax... 182 5e-44 UniRef50_C0GFG5 Transcriptional regulator, LuxR family with TPR ... 182 6e-44 UniRef50_Q0S014 Transcriptional regulator, MalT family protein n... 181 8e-44 UniRef50_C1BC55 Putative serine/threonine protein kinase n=2 Tax... 181 1e-43 UniRef50_C8SFS0 ATP-dependent transcriptional regulator, MalT-li... 180 2e-43 UniRef50_B0HWG7 HTH-type transcriptional regulator MalT (ATP-dep... 179 4e-43 UniRef50_Q1LAZ5 ATP-dependent transcriptional regulator, MalT-li... 178 8e-43 UniRef50_D1UL69 ATP-dependent transcriptional regulator, MalT-li... 178 8e-43 UniRef50_B6IXM7 Transcriptional regulator, LuxR family protein n... 177 2e-42 UniRef50_C0GFP5 Transcriptional activator domain protein n=1 Tax... 176 3e-42 UniRef50_A9B3X7 ATP-dependent transcriptional regulator, MalT-li... 176 6e-42 UniRef50_Q397N7 ATP-dependent transcriptional regulator, MalT-li... 174 2e-41 UniRef50_A5V8I9 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 173 3e-41 UniRef50_A8VQD6 MMPL domain protein n=1 Tax=Bacillus selenitired... 172 4e-41 UniRef50_B5WTD5 ATP-dependent transcriptional regulator, MalT-li... 172 5e-41 UniRef50_B8KM86 Transcriptional regulator n=3 Tax=Gammaproteobac... 172 5e-41 UniRef50_Q5Z362 Putative serine/threonine protein kinase n=1 Tax... 171 9e-41 UniRef50_B9K0P0 Two component response regulator n=1 Tax=Agrobac... 171 1e-40 UniRef50_A2SJY0 ATP-dependent transcriptional regulator-like pro... 170 3e-40 UniRef50_B1KGF0 ATP-dependent transcriptional regulator, MalT-li... 169 4e-40 UniRef50_A4A4M2 Transcriptional regulator malT n=1 Tax=Congregib... 169 6e-40 UniRef50_UPI0001789493 ATP-dependent transcriptional regulator, ... 167 2e-39 UniRef50_Q21QQ8 ATP-dependent transcriptional regulator, MalT-li... 167 2e-39 UniRef50_A2SE70 ATP-dependent transcriptional regulator-like pro... 167 2e-39 UniRef50_B2TCN8 ATP-dependent transcriptional regulator, MalT-li... 166 3e-39 UniRef50_A3I8R1 Probable transcriptional regulator, luxR family ... 166 4e-39 UniRef50_C6PN74 ATP-dependent transcriptional regulator, MalT-li... 166 5e-39 UniRef50_Q1NHC1 Regulatory protein, LuxR n=1 Tax=Sphingomonas sp... 165 9e-39 UniRef50_A7HS86 Regulatory protein LuxR n=1 Tax=Parvibaculum lav... 162 6e-38 UniRef50_Q4ZXS3 Regulatory protein, LuxR n=22 Tax=Pseudomonas Re... 162 6e-38 UniRef50_UPI000178942B ATP-dependent transcriptional regulator, ... 161 9e-38 UniRef50_P95078 Probable serine/threonine-protein kinase pknK n=... 160 2e-37 UniRef50_A4XVC9 Regulatory protein, LuxR n=11 Tax=Bacteria RepID... 160 2e-37 UniRef50_Q0KDB0 Transcriptional regulator, LuxR-family n=1 Tax=R... 160 3e-37 UniRef50_A9BM99 ATP-dependent transcriptional regulator, MalT-li... 157 2e-36 UniRef50_D2S7N2 ATP-dependent transcriptional regulator, MalT-li... 156 3e-36 UniRef50_UPI0001694022 transcriptional regulator, LuxR family pr... 155 5e-36 UniRef50_Q46PW4 Regulatory protein, LuxR n=1 Tax=Ralstonia eutro... 153 3e-35 UniRef50_C6XP68 ATP-dependent transcriptional regulator, MalT-li... 153 3e-35 UniRef50_C8XC62 ATP-dependent transcriptional regulator, MalT-li... 153 3e-35 UniRef50_B0RP73 HTH-type transcriptional regulator, LuxR family ... 151 1e-34 UniRef50_Q3BPP6 Transcriptional regulator, LuxR family n=6 Tax=X... 150 2e-34 UniRef50_A9AZG3 ATP-dependent transcriptional regulator, MalT-li... 150 2e-34 UniRef50_A4XVC8 Regulatory protein, LuxR n=7 Tax=Pseudomonas aer... 149 4e-34 UniRef50_Q2SM19 ATP-dependent transcriptional regulator n=1 Tax=... 147 1e-33 UniRef50_Q2SIT0 ATP-dependent transcriptional regulator n=1 Tax=... 147 2e-33 UniRef50_B1IL87 Transcriptional regulator, LuxR family n=5 Tax=C... 146 3e-33 UniRef50_UPI0001C310C8 ATP-dependent transcriptional regulator, ... 145 5e-33 UniRef50_Q1N117 Probable transcriptional regulator n=1 Tax=Berma... 144 1e-32 UniRef50_B5HRX4 Transcriptional regulator n=1 Tax=Streptomyces s... 144 1e-32 UniRef50_UPI0001C312D5 ATP-dependent transcriptional regulator, ... 144 2e-32 UniRef50_C5C615 ATP-dependent transcriptional regulator, MalT-li... 144 2e-32 UniRef50_C9ZHK9 Putative transcriptional regulator n=1 Tax=Strep... 144 2e-32 UniRef50_A6CQL5 Transcriptional regulator n=1 Tax=Bacillus sp. S... 142 7e-32 UniRef50_A2SP76 ATP-dependent transcriptional regulator-like pro... 141 1e-31 UniRef50_B9JN67 Transcriptional regulator protein n=2 Tax=Agroba... 135 1e-29 UniRef50_B0FB23 Transcriptional regulator n=1 Tax=uncultured bac... 131 1e-28 UniRef50_A1T5L2 Regulatory protein, LuxR n=2 Tax=Mycobacterium R... 129 4e-28 UniRef50_A3IBY3 Transcriptional regulator n=2 Tax=Bacillaceae Re... 129 4e-28 UniRef50_A1HM46 Transcriptional activator domain n=1 Tax=Thermos... 129 4e-28 UniRef50_A8LZ74 ATP-dependent transcriptional regulator, MalT-li... 129 5e-28 UniRef50_A9WAL3 Transcriptional activator domain n=3 Tax=Chlorof... 129 8e-28 UniRef50_UPI0001C32137 ATP-dependent transcriptional regulator, ... 128 8e-28 UniRef50_C8XCA9 ATP-dependent transcriptional regulator, MalT-li... 127 2e-27 UniRef50_Q67R98 Transcriptional regulator n=1 Tax=Symbiobacteriu... 127 2e-27 UniRef50_Q1LKC5 ATP-dependent transcriptional regulator, MalT-li... 126 4e-27 UniRef50_A5GBS1 Tetratricopeptide TPR_4 n=1 Tax=Geobacter uranii... 125 7e-27 UniRef50_Q2B993 Transcriptional regulator n=1 Tax=Bacillus sp. N... 124 2e-26 UniRef50_A5UYI0 Transcriptional activator domain n=2 Tax=Roseifl... 123 4e-26 UniRef50_C1B9T9 Putative LuxR family transcriptional regulator n... 122 6e-26 UniRef50_UPI00006A2BBB UPI00006A2BBB related cluster n=1 Tax=Xen... 122 6e-26 UniRef50_B5HWH8 LuxR-family transcriptional regulator n=9 Tax=St... 121 1e-25 UniRef50_A2SDT6 ATP-dependent transcriptional regulator-like pro... 119 4e-25 UniRef50_A5GAS8 Transcriptional activator domain n=1 Tax=Geobact... 117 1e-24 UniRef50_Q0B0H9 ATP-dependent transcriptional regulator-like pro... 117 2e-24 UniRef50_Q0S8R3 Transcriptional regulator n=1 Tax=Rhodococcus jo... 117 3e-24 UniRef50_D1CIB7 Transcriptional activator domain protein n=1 Tax... 116 3e-24 UniRef50_A1AUN2 Transcriptional activator domain n=1 Tax=Pelobac... 116 4e-24 UniRef50_Q13RN6 ATP-dependent transcriptional regulator, MalT re... 115 5e-24 UniRef50_A3PV03 ATP-dependent transcriptional regulator-like pro... 115 6e-24 UniRef50_Q1Q7C6 Similar to ATP dependent transcriptional activat... 115 8e-24 UniRef50_C8XH94 Transcriptional regulator domain protein n=1 Tax... 114 1e-23 UniRef50_Q46TL6 Regulatory protein, LuxR:Tetratricopeptide TPR_4... 114 2e-23 UniRef50_Q0K482 Transcriptional regulator, LuxR-family n=2 Tax=R... 111 1e-22 UniRef50_B8FZ91 Transcriptional regulator domain protein n=8 Tax... 110 3e-22 UniRef50_C1TP26 ATP-dependent transcriptional regulator n=1 Tax=... 110 3e-22 UniRef50_A1TX00 ATP-dependent transcriptional regulator-like n=1... 109 4e-22 UniRef50_B5EC60 Transcriptional activator domain n=1 Tax=Geobact... 108 8e-22 UniRef50_C7Q4U6 ATP-dependent transcriptional regulator, MalT-li... 108 9e-22 UniRef50_Q5P612 Putative regulatory protein, LuxR n=1 Tax=Aromat... 107 2e-21 UniRef50_B8G4C3 Transcriptional activator domain protein n=2 Tax... 107 2e-21 UniRef50_Q5YUK9 Putative transcriptional regulator n=1 Tax=Nocar... 105 6e-21 UniRef50_A0R2Z6 Putative serine/threonine protein kinase n=1 Tax... 104 2e-20 UniRef50_C5BYP8 ATP-dependent transcriptional regulator, MalT-li... 104 2e-20 UniRef50_Q0BZ97 Transcriptional regulator, LuxR family n=1 Tax=H... 104 2e-20 UniRef50_Q0BFD2 ATP-dependent transcriptional regulator, MalT-li... 100 2e-19 UniRef50_Q0SA69 Probable ATP-dependent transcriptional regulator... 100 4e-19 UniRef50_B4WXQ1 Transcriptional regulator, LuxR family protein n... 100 4e-19 UniRef50_A5V1C9 Transcriptional regulator n=2 Tax=Roseiflexus Re... 98 1e-18 UniRef50_Q1NQI1 Transcriptional regulatory protein-like:transcri... 97 2e-18 UniRef50_B9NI01 ABC transporter family protein (Fragment) n=4 Ta... 97 2e-18 UniRef50_A3JA10 ATP-dependent transcriptional regulator, MalT re... 97 3e-18 UniRef50_Q46UJ4 Regulatory protein, LuxR n=2 Tax=Bacteria RepID=... 97 4e-18 UniRef50_A8L327 Transcriptional regulator domain protein n=1 Tax... 96 5e-18 UniRef50_C5BYR9 ATP-dependent transcriptional regulator, MalT-li... 96 8e-18 UniRef50_Q0B065 Putative uncharacterized protein n=1 Tax=Syntrop... 95 1e-17 UniRef50_Q1LD93 ATP-dependent transcriptional regulator, MalT-li... 93 4e-17 UniRef50_A5VE23 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 93 6e-17 UniRef50_A1RBQ1 Putative transcriptional regulator, LuxR family ... 92 8e-17 UniRef50_C0ZBC0 Putative uncharacterized protein n=1 Tax=Breviba... 92 1e-16 UniRef50_C1RKJ7 ATP-dependent transcriptional regulator n=1 Tax=... 91 1e-16 UniRef50_Q0K4A1 Transposase or inactivated derivative n=1 Tax=Ra... 91 2e-16 UniRef50_Q5Z0N1 Putative transcriptional regulator n=1 Tax=Nocar... 91 3e-16 UniRef50_C0ZTT3 Putative LuxR family transcriptional regulator n... 89 7e-16 UniRef50_D2PS65 Transcriptional activator domain protein n=1 Tax... 89 7e-16 UniRef50_C0QDB1 MalT n=1 Tax=Desulfobacterium autotrophicum HRM2... 89 1e-15 UniRef50_C8X3C0 Tetratricopeptide TPR_4 n=1 Tax=Desulfohalobium ... 87 3e-15 UniRef50_C3JMT5 Putative transcriptional regulator n=1 Tax=Rhodo... 87 3e-15 UniRef50_B8DMH8 ATP-dependent transcriptional regulator, MalT-li... 86 6e-15 UniRef50_C0D7B4 Putative uncharacterized protein n=2 Tax=Clostri... 86 7e-15 UniRef50_A5V9B6 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 84 2e-14 UniRef50_C6PMR7 ATP-dependent transcriptional regulator, MalT-li... 84 2e-14 UniRef50_A5UVS9 Transcriptional activator domain n=2 Tax=Roseifl... 84 3e-14 UniRef50_Q1IZS9 ATP-dependent transcriptional regulator n=1 Tax=... 83 5e-14 UniRef50_A5VDQ9 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 83 5e-14 UniRef50_B8GBN1 Transcriptional activator domain protein n=3 Tax... 82 9e-14 UniRef50_Q2JEI5 ATP-dependent transcriptional regulator, MalT-li... 81 2e-13 UniRef50_A3DFE3 ATP-dependent transcriptional regulator-like pro... 81 2e-13 UniRef50_C1CW78 Putative Tetratricopeptide repeat (TPR)-containi... 80 4e-13 UniRef50_A9AYH6 Transcriptional activator domain n=1 Tax=Herpeto... 79 1e-12 UniRef50_UPI0001C4276F hypothetical protein BpOF4_03975 n=1 Tax=... 79 1e-12 UniRef50_A5V3K4 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 78 2e-12 UniRef50_Q4KI37 Transcriptional regulator, LuxR family n=3 Tax=P... 77 3e-12 UniRef50_Q3A891 ATP-dependent transcriptional regulator n=1 Tax=... 75 1e-11 UniRef50_A4XRD7 Regulatory protein, LuxR n=2 Tax=Pseudomonas Rep... 75 1e-11 UniRef50_Q2SH33 Probable regulatory protein, luxR family n=1 Tax... 74 2e-11 UniRef50_A6V205 Probable transcriptional regulator n=7 Tax=Bacte... 74 3e-11 UniRef50_UPI0001C310C7 ATP-dependent transcriptional regulator, ... 74 4e-11 UniRef50_Q143R5 MalT n=1 Tax=Burkholderia xenovorans LB400 RepID... 73 5e-11 UniRef50_C8W196 ATP-dependent transcriptional regulator, MalT-li... 72 1e-10 UniRef50_B8HJC4 Transcriptional activator domain protein n=6 Tax... 70 3e-10 UniRef50_A1U449 Regulatory protein, LuxR n=2 Tax=Marinobacter Re... 70 4e-10 UniRef50_Q0SJC2 Possible transcriptional regulator n=1 Tax=Rhodo... 70 4e-10 UniRef50_D0WI68 Putative HTH-type transcriptional regulator MalT... 69 1e-09 UniRef50_B0A6U3 Putative uncharacterized protein n=1 Tax=Clostri... 68 2e-09 UniRef50_Q67R77 Putative transcriptional regulator n=1 Tax=Symbi... 66 5e-09 UniRef50_A6CKT6 Regulatory protein, LuxR n=1 Tax=Bacillus sp. SG... 66 6e-09 UniRef50_A9DNR9 Regulatory protein n=2 Tax=Flavobacteriales RepI... 65 1e-08 UniRef50_A5V421 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 65 2e-08 UniRef50_B0TA01 ATP-dependent transcriptional regulator, MalT-li... 65 2e-08 UniRef50_D1CEU2 Transcriptional regulator, LuxR family n=1 Tax=T... 63 4e-08 UniRef50_C7H4E9 Transcriptional regulator, LuxR family (Fragment... 63 5e-08 UniRef50_UPI0001C32364 transcriptional activator domain protein ... 62 1e-07 UniRef50_P17051 Regulatory protein alkS n=3 Tax=Pseudomonas RepI... 61 2e-07 UniRef50_C0GFG4 ATP-dependent transcriptional regulator, MalT-li... 60 4e-07 UniRef50_D1BFN8 ATP-dependent transcriptional regulator n=1 Tax=... 60 5e-07 UniRef50_Q143R8 ATP-dependent transcriptional regulator, MalT re... 60 5e-07 UniRef50_Q3M2P3 Two component transcriptional regulator, LuxR fa... 60 5e-07 UniRef50_UPI0001B545A4 two component transcriptional regulator, ... 60 5e-07 UniRef50_C8WJ36 Transcriptional regulator, LuxR family n=1 Tax=E... 60 5e-07 UniRef50_A7NFQ1 Transcriptional regulator, LuxR family n=1 Tax=R... 60 5e-07 UniRef50_D0YX60 Transcriptional regulator VpsT n=1 Tax=Photobact... 59 6e-07 UniRef50_C6XUH9 Response regulator receiver n=2 Tax=Pedobacter R... 59 7e-07 UniRef50_A5UQJ6 Response regulator receiver protein n=1 Tax=Rose... 59 7e-07 UniRef50_Q6ACS4 Transcriptional regulator, LuxR family n=1 Tax=L... 59 1e-06 UniRef50_D0LDI8 Regulatory protein LuxR n=1 Tax=Gordonia bronchi... 58 2e-06 UniRef50_C1ADB1 Putative NarL family two-component response regu... 58 2e-06 UniRef50_C3JFP5 Regulatory protein, LuxR n=2 Tax=Rhodococcus ery... 58 2e-06 UniRef50_Q1N2F1 Regulatory protein CsgD n=1 Tax=Bermanella maris... 58 2e-06 UniRef50_A3U0W9 Two-component response regulator n=6 Tax=Rhodoba... 57 2e-06 UniRef50_B2UD70 Transcriptional activator domain n=1 Tax=Ralston... 57 2e-06 UniRef50_D2S488 Transcriptional activator domain protein n=2 Tax... 57 3e-06 UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteri... 57 3e-06 UniRef50_Q2W7W6 Response regulator n=2 Tax=Magnetospirillum RepI... 57 4e-06 UniRef50_A7VGK0 Putative uncharacterized protein n=1 Tax=Clostri... 57 4e-06 UniRef50_C4DI56 Response regulator containing a CheY-like receiv... 57 4e-06 UniRef50_B8G436 Transcriptional regulator, LuxR family n=3 Tax=C... 57 4e-06 UniRef50_B8HY00 Two component transcriptional regulator, LuxR fa... 57 4e-06 UniRef50_A1UDE3 Two component transcriptional regulator, LuxR fa... 57 5e-06 UniRef50_D0XHY9 Putative uncharacterized protein n=1 Tax=Vibrio ... 56 5e-06 UniRef50_D1XHI5 Two component transcriptional regulator, LuxR fa... 56 6e-06 UniRef50_C6XYL1 Regulatory protein LuxR n=1 Tax=Pedobacter hepar... 56 7e-06 UniRef50_UPI0001C37F7A transcriptional regulator, LuxR family pr... 56 8e-06 UniRef50_UPI0000382D84 COG2909: ATP-dependent transcriptional re... 56 8e-06 UniRef50_Q39P16 ATP-dependent transcriptional regulator, MalT-li... 56 8e-06 UniRef50_B5G749 Two-component system response regulator n=1 Tax=... 55 8e-06 UniRef50_Q7NMF3 Two-component response regulator n=1 Tax=Gloeoba... 55 9e-06 UniRef50_Q0AV95 ATP-dependent transcriptional regulator-like pro... 55 1e-05 UniRef50_C3JUK9 LuxR-family transcriptional regulator n=2 Tax=Rh... 55 1e-05 UniRef50_A5VA51 Transcriptional regulator, LuxR family n=2 Tax=A... 55 1e-05 UniRef50_A9WVF8 Two component response regulator n=1 Tax=Renibac... 55 1e-05 UniRef50_Q0S5A4 Response regulator, two-component system n=4 Tax... 55 1e-05 UniRef50_Q11ZX7 ATP-dependent transcriptional regulator, MalT-li... 55 1e-05 UniRef50_A5URG0 Response regulator receiver protein n=2 Tax=Rose... 55 1e-05 UniRef50_D1W148 Transcriptional regulator, LuxR family n=3 Tax=P... 55 1e-05 UniRef50_A8VQD5 Response regulator receiver protein n=1 Tax=Baci... 55 1e-05 UniRef50_Q1N3B3 Regulatory protein, LuxR n=1 Tax=Bermanella mari... 55 1e-05 UniRef50_Q1ARX2 Transcriptional regulator, LuxR family n=1 Tax=R... 55 1e-05 UniRef50_C0ZSB6 Putative LuxR family transcriptional regulator n... 55 1e-05 UniRef50_UPI0001BC339C LuxR family transcriptional regulator, ma... 55 1e-05 UniRef50_A0QNN3 DNA-binding response regulator, LuxR family prot... 55 2e-05 UniRef50_A1SMX9 Regulatory protein, LuxR n=1 Tax=Nocardioides sp... 55 2e-05 UniRef50_A8TBQ1 Regulatory protein CsgD n=3 Tax=Vibrio RepID=A8T... 55 2e-05 UniRef50_B7GKV4 Transcriptional regulator LuxR family n=1 Tax=An... 55 2e-05 UniRef50_UPI0001B5426C two-component system response regulator n... 55 2e-05 UniRef50_B9VAR7 OtcG n=1 Tax=Streptomyces rimosus RepID=B9VAR7_S... 54 2e-05 UniRef50_A4BEK3 Putative transcriptional regulator, LuxR family ... 54 2e-05 UniRef50_C7QAL7 Transcriptional regulator, LuxR family n=1 Tax=C... 54 2e-05 UniRef50_A0PL56 Nitrate/nitrite response regulator protein NarL ... 54 2e-05 UniRef50_A4U0R2 DNA-binding response regulator, LuxR family n=1 ... 54 2e-05 >UniRef50_A8GKU0 HTH-type transcriptional regulator malT n=171 Tax=Bacteria RepID=MALT_SERP5 Length = 904 Score = 1443 bits (3735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 685/903 (75%), Positives = 796/903 (88%), Gaps = 3/903 (0%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 MLIPSKLSRPVRL +TV+R+RLLAKL+ N+RL L+ PAGYGKTTL++QWAAGK+D+G Sbjct: 1 MLIPSKLSRPVRLQNTVIRDRLLAKLASTANYRLTLVNCPAGYGKTTLVAQWAAGKSDLG 60 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 WYSLDE DNQ ERFASYLIAA+Q A+ GHC E ++QK QYASL++LFAQLFIEL++WH Sbjct: 61 WYSLDESDNQPERFASYLIAALQLASGGHCVKSEALSQKHQYASLSALFAQLFIELSDWH 120 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 PLYLVIDDYHLITN VIHE+MRFF+RHQPENLTL++LSR LP LGIANLRVRDQLLE+G Sbjct: 121 QPLYLVIDDYHLITNDVIHEAMRFFLRHQPENLTLILLSRTLPPLGIANLRVRDQLLEMG 180 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 +QQLAFTHQEAKQFFDCRL SP+E+ +SSR+CD+V GWATALQLIALSARQ+ SA +SA Sbjct: 181 TQQLAFTHQEAKQFFDCRLVSPMESQDSSRLCDEVEGWATALQLIALSARQSNSSAQQSA 240 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 +RLAG+NASHLSDYLVDEVLD+VD R FLL+ ++LRSMNDALI R+TGE+NGQ RLEE Sbjct: 241 KRLAGLNASHLSDYLVDEVLDHVDAEARAFLLRCSVLRSMNDALIVRLTGEDNGQQRLEE 300 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +ERQGLF+ RMDD+GEWFC+HPLF FLRQRCQWELA ELP +HRAAAE W+A G+P+EA Sbjct: 301 LERQGLFIHRMDDSGEWFCFHPLFATFLRQRCQWELALELPGLHRAAAEGWLALGYPAEA 360 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 IHHALAA D MLRDILL HAWSLF+HSEL+LLEE L ALP++ L++NP+L LLQAWL Q Sbjct: 361 IHHALAASDVSMLRDILLQHAWSLFHHSELALLEECLNALPYERLIQNPKLALLQAWLAQ 420 Query: 421 SQHRYGEVNTLLARAEHEIKDIR---EDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 SQHRY EVNTLL RAE ++D + + T+ AEF+ALRAQVAIN G P+EAERLA AL+ Sbjct: 421 SQHRYSEVNTLLERAEQAMRDQKIEVDRTLEAEFDALRAQVAINAGKPEEAERLATEALK 480 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 LP +YSRIVATSV GEV HCKGEL R+L +MQQTEQMAR+H +HYALW+L+QQSEI Sbjct: 481 FLPLSSYYSRIVATSVTGEVHHCKGELARALPMMQQTEQMARRHQAYHYALWALLQQSEI 540 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 L AQGFLQ A+ETQ+KAF+L+ EQHLEQLPMHEFL+RIR+Q+LW+W+RLDEAE +AR G+ Sbjct: 541 LIAQGFLQAAFETQDKAFELVREQHLEQLPMHEFLLRIRSQILWSWSRLDEAEDAAREGL 600 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 ++L++YQPQQQLQC+AML +CSLARGDLDNA + + R E LL +YH DW++NA+K RV Sbjct: 601 KILANYQPQQQLQCIAMLAKCSLARGDLDNANAHMQRCEVLLHGTQYHRDWLTNADKPRV 660 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 I+WQMTGD AAA WLR T KP A+NHF+QGQWRNIAR QI+LG++E AE+VL+ELNEN Sbjct: 661 IHWQMTGDTTAAAQWLRQTEKPGMADNHFMQGQWRNIARVQIMLGQYEEAEVVLDELNEN 720 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 AR LRL+SDLNRNLLL NQLYWQ RKSDAQ+VL++AL LA+RTGFISHFVIEGEAMAQQ Sbjct: 721 ARRLRLVSDLNRNLLLSNQLYWQMERKSDAQKVLMEALSLASRTGFISHFVIEGEAMAQQ 780 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLT 837 LRQLIQLNTLPELE HRAQRILR+INQHHRHKFAHFDENFV++LL HP+VPELIRTSPLT Sbjct: 781 LRQLIQLNTLPELENHRAQRILRDINQHHRHKFAHFDENFVDKLLTHPQVPELIRTSPLT 840 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMM 897 QREWQVLGLIYSGYSN+QIAGEL VAATTIKTHIRNLYQKLGVAHRQ+AVQ AQQLLKMM Sbjct: 841 QREWQVLGLIYSGYSNDQIAGELAVAATTIKTHIRNLYQKLGVAHRQEAVQQAQQLLKMM 900 Query: 898 GYG 900 GYG Sbjct: 901 GYG 903 >UniRef50_A7N5N6 HTH-type transcriptional regulator malT n=66 Tax=Gammaproteobacteria RepID=MALT_VIBHB Length = 902 Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/902 (46%), Positives = 616/902 (68%), Gaps = 3/902 (0%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 M IPSKL+RP RL + +VR R+L L A ++L L SPAGYGKTT+ +QW + K ++G Sbjct: 1 MWIPSKLTRPGRLHNAIVRPRVLDLLQQAPYYKLVLFRSPAGYGKTTMAAQWLSDKPNVG 60 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 WYS+D+ DN RF +YL+ A+ +ATN +C+ + +A+KRQ++SL SLF+++F E+A++ Sbjct: 61 WYSIDDSDNDGFRFVNYLLQALNKATNYNCSNAQKLAEKRQFSSLRSLFSEVFAEMADFQ 120 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 Y+V+DDYHLITN IHESMRFF++H P+NLT+VV SR P LG ANLRVRD ++EIG Sbjct: 121 HECYVVLDDYHLITNDEIHESMRFFLKHMPDNLTVVVTSRAAPPLGTANLRVRDLMIEIG 180 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++ LAF +E +FF+ R++ I+ ++ + V GW +ALQLIAL A+ + ++ Sbjct: 181 NEMLAFDTEETTRFFNQRIADGIDEDMANNLRTYVEGWPSALQLIALQAQHQNRTLAQTV 240 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 ++ N +HL DYLV+EV D +D TRHFL++ ++L ND L+ +T E+ +E Sbjct: 241 ESVSQFNHAHLWDYLVEEVFDLLDQETRHFLMQVSVLDHFNDELVFALTQREDALGMIES 300 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 + R GLF+ ++ WF +H LFG FL + + ++HR AA +W+ Q P +A Sbjct: 301 LNRFGLFIYPLEGEQNWFRFHNLFGEFLSHERLARIPQQEKDLHRNAAVAWLKQKAPHQA 360 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 IHHA + D ++ +IL W +FN EL+ LE ++ L D L +P+L +L+AWL Q Sbjct: 361 IHHAQKSNDTDLIVEILNEFGWKMFNQGELTTLESAINQLDKDLLFSHPKLSMLRAWLAQ 420 Query: 421 SQHRYGEVNTLLARAE--HEIKDIREDTMH-AEFNALRAQVAINDGNPDEAERLAKLALE 477 SQHRY +V LLA AE H+ ++I D+ + + NAL AQVAIN P+ A LA+LAL Sbjct: 421 SQHRYNQVGKLLAEAEEEHKKRNIEIDSGYQGQANALLAQVAINSNQPEHALELAELALS 480 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 +L P + SRIVATSV+GEV H G+L R+L +MQQTE++ARQ+ V+H ALW+++QQSEI Sbjct: 481 QLDPTVYRSRIVATSVVGEVNHVLGKLDRALPMMQQTEKLARQYQVYHQALWAILQQSEI 540 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 + AQG++Q A+E Q+ F+LI EQ L+ +P+HEFL+RIRAQ+LW W RLDEAE A G+ Sbjct: 541 MIAQGYVQAAFELQDSGFRLIEEQQLQHVPLHEFLLRIRAQVLWCWNRLDEAEECAYKGL 600 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 ++L ++ P + L +ML + ++ RG+LD A + +++L+ YH DW +NA+ + Sbjct: 601 QILENHSPSKHLHSYSMLARIAIGRGELDKAGKFIEHIQHLMKQSTYHVDWTANASLSLI 660 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 ++WQ G+ A WL +PE A NHF Q QWRNIARA I LG+++ A L+ L Sbjct: 661 LFWQARGNTEAIQEWLNTAVRPESACNHFQQLQWRNIARAHINLGQYDEAREALDFLQSE 720 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 A L++D NRNL++ L + + A+ +L +AL + N+TG + +F+ +G + Sbjct: 721 AHRTNLVTDTNRNLVVEAILAARQKDEEQAKTLLKEALVMTNQTGMVGNFLTDGATIGGL 780 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLT 837 L +L + L +LE+HRAQ+++++I+ + R + HFDE+F+E+L+NHP VPEL+RTSPLT Sbjct: 781 LEKLSLRHELGDLERHRAQQLMKDISSNQRSRSIHFDEDFIEKLVNHPNVPELVRTSPLT 840 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMM 897 QREWQVLGLIYSG+SNEQIA EL+VA TTIKTHIRNLYQKL +A+R++A+ A+ LL++M Sbjct: 841 QREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTAENLLQLM 900 Query: 898 GY 899 GY Sbjct: 901 GY 902 >UniRef50_Q2SPN4 Maltose regulon positive regulatory protein MalT n=3 Tax=Gammaproteobacteria RepID=Q2SPN4_HAHCH Length = 918 Score = 594 bits (1531), Expect = e-168, Method: Compositional matrix adjust. Identities = 347/909 (38%), Positives = 522/909 (57%), Gaps = 15/909 (1%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQ--WAAGKNDI 59 LI +K+ P R H + RE+ L + L L+ +PAGYGKTT+I A G N Sbjct: 12 LIKAKILPPPRPAHLLEREKFDDLLHEIDPVNLILVQAPAGYGKTTMIDDRLGALGAN-A 70 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W+ LD DN E+FA Y+ ++ +AT G C ++ Y +L + L EL Sbjct: 71 AWFRLDAQDNLSEQFAFYVAHSLNEATRGACPETLRTLNQQGYPTLQTFLTDLLSELPLE 130 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 PL+LV+DDYHLI+NP IH + F +RH P +TLV+LSR P +G+A LR++ ++LEI Sbjct: 131 GDPLHLVLDDYHLISNPEIHSGVMFLLRHLPPYITLVLLSRTTPPIGVAQLRMQGRMLEI 190 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 ++ L+F+ EA+ +F+ RL + R V GW +ALQL+A +A Sbjct: 191 TAKDLSFSADEAQVYFEQRLRFEVSRESVERANRRVEGWVSALQLLAATASTGVEFNEYV 250 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 + +G + ++ DY + ++D R FLL++++L N ++ R+ +++GQ L Sbjct: 251 EQLHSGNH--YIFDYFDELTRTSIDNEQRLFLLRTSVLERFNALMVMRLAQQQDGQFLLN 308 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + GLF+ +D +G WF YHPLF +LR L E ++H+ A+++W GF + Sbjct: 309 SLLNLGLFIVPLDSSGLWFRYHPLFAAYLRHMQVCVLPDETAQLHQRASDAWREMGFFED 368 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A HA+ A D ++DILL+ F + +LL+ AL + + ++P L LL+AW+ Sbjct: 369 AARHAVLAKDQQRIKDILLSCGRDFFTEGQFNLLQRCFDALNKEVIADHPILTLLRAWVA 428 Query: 420 QSQHRYGEVNTLLARAEHEIK----DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 Q Q+++ EV + L AE +K + + ++ EFNA+RAQVA+N G+ + A+ AK A Sbjct: 429 QGQYQWSEVESWLRAAEQHLKTHCSEEEWEAINGEFNAVRAQVAMNVGDAERAQTFAKSA 488 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 L P SR A+SV+GE L +G L ++ MQ TEQ+A +W+L QQS Sbjct: 489 LAHDPVYLPTSRTAASSVIGESLFVQGHLKEAITRMQDTEQLALAEHAHQNVIWALCQQS 548 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 EI AQG+LQ A+ QEKA Q + LE+LP+ EFL RIR+Q++W W L+ AE A Sbjct: 549 EISVAQGYLQKAYNIQEKALQYAEDHSLERLPILEFLYRIRSQIMWEWHHLESAERCALK 608 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 GIE+L S + +Q ML + + ARG + ++ +L +G+YH DW +NA+ Sbjct: 609 GIEILESQGERWFIQSYVMLAKIAQARGRQSLCADYVQKIHKMLASGEYHIDWTANAHAA 668 Query: 656 RVIYWQMTGDKAAAANWLRHTAK--PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 + YW DK + WL + PE A NHF Q RN ARA + LG+F+ A +LE Sbjct: 669 MLSYWDAVRDKESIQRWLTAAPEPTPEQATNHFTQCNIRNWARAYVSLGDFDKALPLLEG 728 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 + A L +D+NRN + L+QLYW ++ DA R + ALKLA+ TG + F+ G+ Sbjct: 729 IQSMAEQFGLKTDINRNHIHLSQLYWLNEQREDALRHMAIALKLASTTGAVGSFLRIGKV 788 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFA---HFDENFVERLLNHPEVPEL 830 + L+ LI L E+E+ RA+R+++ Q A DE ++ +++ P+VPEL Sbjct: 789 LINILKALISEEQLDEMEKQRAERLIQLAQQQRDFSRAIRISLDEAIIQDIIDRPDVPEL 848 Query: 831 IRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 IRTSPLT+REWQVL LI++G SN+QIA ++VA TT+KTHIR+LYQK + HR +A+ A Sbjct: 849 IRTSPLTRREWQVLSLIHAGLSNDQIAEHMKVAPTTVKTHIRSLYQKQNITHRSEAINLA 908 Query: 891 QQLL-KMMG 898 + LL K+ G Sbjct: 909 RDLLSKIQG 917 >UniRef50_A4VQ60 ATP-dependent transcriptional regulator n=4 Tax=Gammaproteobacteria RepID=A4VQ60_PSEU5 Length = 932 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 332/909 (36%), Positives = 499/909 (54%), Gaps = 17/909 (1%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIG 60 LIP+KL+ P+ + R RL L RLA++ + +G+GKTTL +QWA A + Sbjct: 28 LIPTKLAIPMLPPGLLERPRLDEWLQRLGQVRLAVLHAASGFGKTTLAAQWARAFDGRVA 87 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W L DN +F YL A+ + C + +A++ Q SL +LF QL EL H Sbjct: 88 WLQLHASDNLALQFGRYLTQALDPQLDAGCPLAVALAEQGQ-VSLDALFTQLLAELPGEH 146 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 + LV+D++ ++ + + +RFF+RH P +TL+V SR LP LG+A LRV+ QLL + Sbjct: 147 EAILLVLDEFEVLHDRELIAGLRFFLRHMPSWMTLLVCSRRLPGLGVAELRVKHQLLLLD 206 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++QLAF E + + + I + R+ + GW ALQL A Q ++ Sbjct: 207 ARQLAFEDDEVQALLELGVPVSINREQVERLNRRIGGWPCALQL----ALQEVQTSRGMD 262 Query: 241 RRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 L + H + DY+ ++VL+ + R FL + +L + AL +T +G+ L Sbjct: 263 LFLENLQLGHPDIRDYMREQVLEGLPDDLRGFLEATCLLERFDAALADHLTEACHGREML 322 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 E +ER GLF+Q +D W+ YHPLF FL+ + + ++H AA + +A+G P Sbjct: 323 ERLERGGLFIQPLDSLRRWYSYHPLFAVFLQGELRTHQPQRVNQLHLRAASALLAEGLPE 382 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 EA HA+ AG+ + +IL H + + L LL++ L+ LP + +P L LLQAW+ Sbjct: 383 EAARHAVQAGEPQQVAEILQRHGRAFYRQGRLGLLQQCLETLPEAVIAGSPLLTLLQAWV 442 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDT----MHAEFNALRAQVAINDGNPDEAERLAKL 474 Q+ +++ +V +E + + + EFNA+RAQ+A+N G+ A LA+ Sbjct: 443 SQNSYQFDQVERWFKASELALHGSCSEQDWARIVGEFNAVRAQLAMNQGDEQRAIALAEE 502 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 AL P SR+ A S L E +G L ++ ++ E+ AR+ + H +WSL Q Sbjct: 503 ALTCEPLIMRTSRVAALSGLAEAHFVQGALPQAQKQYEEAERRAREINASHLVVWSLGQL 562 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 SEI AQG LQ A+ QE+A Q I +Q L+ +P+ EF+ R+R Q+L W +LD AE A Sbjct: 563 SEIAIAQGHLQKAYTLQERAIQYIEQQRLQAMPIVEFIYRVRGQVLLEWHQLDAAEQCAL 622 Query: 595 SGIEVLSSY-QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 GI++L P+ +LQ A+L + ARG + +++ +L + +YH DW++NA+ Sbjct: 623 QGIQILDELDDPRWRLQSYALLAGVAYARGQQHACADYIGQMQTMLADDRYHIDWLANAH 682 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 V + YW + D+ A WL NHF Q RN ARA + LG+ + A +L + Sbjct: 683 AVMLAYWDSSQDRDAIRQWLVSAPPVNGGANHFSQLNARNHARAYLALGQLDSALPILRQ 742 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 L NA L+ D NRN +LL QL+W + A L A+ LA+ +G I F+ G+ Sbjct: 743 LLANAECHGLVMDRNRNHILLAQLHWLREERQQALDHLQRAMTLASGSGAIGSFLRVGKP 802 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFA---HFDENFVERLLNHPEVPEL 830 + L+ L+ TL E E RA R+++ Q A DE ++ ++N P+VPEL Sbjct: 803 IIGMLKCLLHERTLDEPEVQRATRLIQLAQQQRDFSRAIRITLDEAVIQDIINRPDVPEL 862 Query: 831 IRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 IR SPLT+REWQVL LI++G SNEQIA L VA TTIKTHIR+LYQKL + HR +AVQ A Sbjct: 863 IRRSPLTRREWQVLSLIHAGQSNEQIADHLNVAPTTIKTHIRSLYQKLNITHRSEAVQLA 922 Query: 891 QQLL-KMMG 898 + LL K+ G Sbjct: 923 RDLLSKIQG 931 >UniRef50_Q2SEA9 ATP-dependent transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SEA9_HAHCH Length = 907 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 295/893 (33%), Positives = 459/893 (51%), Gaps = 24/893 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK-NDIG 60 LIPSK S P H + R RL A L A + L ++ +PAG+GKTTL++ W+ + I Sbjct: 12 LIPSKFSPPQTGSHVLSRPRLEAALIDAASKPLCIVRAPAGFGKTTLMTHWSRRQPGRIA 71 Query: 61 WYSLDEGDNQQERFASYLIAAV-QQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W +LDE DN F YL+A + +QA + +Y L L +L EL+ Sbjct: 72 WINLDELDNDPILFGRYLVATLSRQAPELQGPLSRVEGALSEY-DLIWLTGKLCNELSTL 130 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L LV+DDYH + N IH ++RF I+HQP L L +L+R P LG+AN RVR L EI Sbjct: 131 DQQLVLVLDDYHHVHNEHIHAALRFLIQHQPPALRLFILTRAEPPLGLANWRVRGMLHEI 190 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAES-SRICDDVSGWATALQLIALSARQNTHSAHK 238 G+ +L FT +EA+QF + +E ++ + GWA LQ+IALSA S + Sbjct: 191 GTDELGFTLEEAQQFLHEKNGLRVEDPQALQEALQRLKGWAAGLQIIALSAPAKD-SLND 249 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 RR G + +H+ D+L +EVL + FLL++++L N L VT + L Sbjct: 250 YLRRFNGAH-THVLDFLAEEVLSKQPPERQAFLLQTSVLERFNSELAQAVTEHKESFGML 308 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQGFP 357 +++E+ G+F+ +D+ W+ YHP F FLR + Q + ++ + ++HR A E W+ + Sbjct: 309 QDLEKGGMFIAPLDEYRTWYSYHPFFAEFLRHQLQLQATSQTIIDLHRRAYEWWLQKAQT 368 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 +EA+ H L GD +++ + L H WSLF LSL+E+ L LP + + +L LL+AW Sbjct: 369 AEALTHLLQIGDPMLIAEALSLHGWSLFEQGRLSLIEQCLDVLPETVIANDNRLALLRAW 428 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDT----MHAEFNALRAQVAINDGNPDEAERLAK 473 + +Q + L +AE + D +E+ + AE +AL+AQ+ + + A A+ Sbjct: 429 VCLTQADPDSLEEALNQAEQRLPDQQEEAQWRRVSAEISALKAQLYATVEDIEAAHNHAR 488 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 AL + +A SVLGE C+GEL ++ Q E AR D H LW+L Q Sbjct: 489 QALAISSSA-SNAAAIALSVLGETHVCRGELDQARDAFMQAEASARAADSMHGLLWTLGQ 547 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 Q+++L QG L + Q QL E HL Q P+ EF+ R RA LL W + EA Sbjct: 548 QADVLRHQGDLVGCHQQQTFILQLAREHHLAQTPVMEFIHRQRADLLIEWLQCHEAAQHC 607 Query: 594 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 +G+ ++ +P + A+ +L +G+ A + L + L+ + HSDW + + Sbjct: 608 DAGLRIVEHLEPHCAVPLNALKASIALQQGEAGAADTYLRKNTLLMREYRCHSDWRALSA 667 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 +++ YW+ + +A WL P A +HF Q + RN+A A + L A +L Sbjct: 668 SIQLRYWRQQRNLSAIHEWLSAEPPPSPAPSHFQQRRARNLAFALLSLDRSREAAQILLP 727 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 L +R L N +L + G + +A LL AL+LA ++ + E Sbjct: 728 LTAQSRQFGLRLSEMENQILTTWACLRLGNEKEASDALLRALQLAEPMRAVASLLQAPEW 787 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 + L+ + L E+ QR+L + HR + ++ N +PE R Sbjct: 788 LLDFYAFLLDDSRLSSAERRHLQRVLELSKRQHRPQ---------KKTRN---MPEQARA 835 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 LT +EW+VL LI G SNE+IA L VA +T+++HI+++YQKLG++ R +A Sbjct: 836 LALTPKEWEVLRLIGEGSSNERIAERLYVAPSTVRSHIKHVYQKLGISSRVEA 888 >UniRef50_UPI0001914156 transcriptional regulator MalT n=4 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001914156 Length = 185 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 168/185 (90%), Positives = 176/185 (95%) Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAE 349 GEENGQMRLEEIERQGLFLQRMDDTGEWF YHPLFG+FLRQRCQWELAAELPEIHRAAAE Sbjct: 1 GEENGQMRLEEIERQGLFLQRMDDTGEWFSYHPLFGSFLRQRCQWELAAELPEIHRAAAE 60 Query: 350 SWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 SWM QGFPSEAIHHALAAGDA MLRDILLNHAW LFNHSEL+LLEESLKALPW+SLLENP Sbjct: 61 SWMEQGFPSEAIHHALAAGDAQMLRDILLNHAWGLFNHSELALLEESLKALPWESLLENP 120 Query: 410 QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 +LVLLQAWLMQSQHRY EVNTLLARAE EIK + + T+HAEFNALRAQVAINDGNP+EAE Sbjct: 121 RLVLLQAWLMQSQHRYSEVNTLLARAEQEIKGVMDGTLHAEFNALRAQVAINDGNPEEAE 180 Query: 470 RLAKL 474 RLAKL Sbjct: 181 RLAKL 185 >UniRef50_A7NS05 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NS05_ROSCS Length = 1021 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 261/911 (28%), Positives = 415/911 (45%), Gaps = 59/911 (6%) Query: 17 VVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-----AGKNDIGWYSLDEGDNQQ 71 + R RL+ ++ + L LI++PAG+GKTTL+++WA A + + W SLD D+ Sbjct: 132 IARPRLIERIDDTLHAALTLISAPAGFGKTTLLTEWALHVQSAARAAVAWISLDATDDDP 191 Query: 72 ERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYH 131 RF S + A+ A ++ + Q L L ++L +P+ +V+DDYH Sbjct: 192 VRFWSAITLALSVVRTDIGAHARSLLESPQRPPHMLLAHALLVDLNAVAAPIIVVLDDYH 251 Query: 132 LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEA 191 LIT+ +HES+ FI H ++ LV+ +R P L +A RVR +L E+ + L FT +EA Sbjct: 252 LITSAEVHESLTTFIEHLSPHVHLVIATRADPPLPLARWRVRGRLAELRAADLRFTTEEA 311 Query: 192 KQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHL 251 F + + + D GW ALQL ALS R RR AG + + + Sbjct: 312 AAFLHSTMGLDLPLDVIRALEDRTEGWVAALQLAALSIRDRA-DVEGFIRRFAGSHRA-I 369 Query: 252 SDYLVDEVLDNVDLATRHFLLKSAILRSMN----DALITRVTGEEN----GQMRLEEIER 303 DYL +EV+ + FLL+++I+ M+ DAL+T E Q L+ +ER Sbjct: 370 VDYLAEEVIGRQPDHIQTFLLRTSIVDRMSAELCDALLTPAADEPGATIPAQAMLDHLER 429 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHH 363 LF+ +D+ W+ YH LF LR R Q A + E+HR AA GF AIHH Sbjct: 430 ANLFVTPLDEERRWYRYHHLFAEMLRDRLQRTQPALVAELHRRAARWHREAGFADAAIHH 489 Query: 364 ALAAGDALMLRDILLNHA-WSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM--- 419 L AGDA D++ A +L+ + L + ALP D++L P+L L Q W + Sbjct: 490 FLQAGDAANAADVIEAIANATLWEQGDAQTLLRWIAALPDDTVLARPRLALDQVWALLAS 549 Query: 420 ----QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 ++ R E++ +L R + +++ I + E A+R+ A G+ A A A Sbjct: 550 IQFDAAEARAAELDHVLTRRDAQMRSI----VIGELAAVRSVAARVRGDVPRALEYATHA 605 Query: 476 LEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 + L +R +A L E +G+L+ + L + + ++ AL ++ + Sbjct: 606 RDHLASIDCSLARAIAVMNLVEARLMQGDLSSAEQLCDELRVASLSRNLV-IALIGVLSR 664 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 SE+ QG L A ++A +L++ + + P+ + A + + RLDEAE A Sbjct: 665 SEVYRNQGRLTDARALLDEALRLLDRRGASERPIVALIHVALADIFYEQNRLDEAEYYAN 724 Query: 595 SGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 + + L +L A+GD A R+E L + +Y WISN Sbjct: 725 LALRRAERWWNNDILIHSTGLLSAIRRAQGDEAAAAKLAERVEQL--SLEYRVGWISNHT 782 Query: 654 KV-RVIYWQMTGDKAAAANW-------LRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 705 R TGD+ AA W L PE + + +AR + GE Sbjct: 783 LAGRAERLLRTGDRQAAERWAAGCGLTLADDPPPERFYEYLV------LARVALARGEGR 836 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A ++ L + + R + L LL Q G + A++ L+ AL+LA G + Sbjct: 837 TALPLIRRLLKQSEEGRHAIRMIETLKLLALTNRQIGDAASARQALIRALRLAEPGGLVR 896 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE---NFVERLL 822 FV EGEAM L + P+ +Q + R A+ D+ F Sbjct: 897 TFVDEGEAMKWLLAD-CGASIAPQAQQG---------DGDARRLLAYVDDLMGMFRSIPT 946 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 P + PLT RE QVL L+ +G ++++IA L +A +T+++HI+ +Y K+ + Sbjct: 947 TQTASPLVHANEPLTAREIQVLRLLATGRTDQEIATSLVIAVSTVRSHIKRIYAKINARN 1006 Query: 883 RQDAVQHAQQL 893 R A A L Sbjct: 1007 RTQAAARAHDL 1017 >UniRef50_C0Z8V4 Probable transcriptional regulator n=2 Tax=Bacillales RepID=C0Z8V4_BREBN Length = 873 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 261/925 (28%), Positives = 418/925 (45%), Gaps = 92/925 (9%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-AAGKNDIG 60 ++ +KL P TV R RL+ +L+ N +L +I++PAG GKTTL+S+W A+G Sbjct: 5 IVTTKLYMPPPRLKTVTRHRLIEQLNEGLNRKLTVISAPAGSGKTTLVSEWLASGDRPFA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W S+DEGDN F +YL A+Q + + Q S+ + + L E+ Sbjct: 65 WISMDEGDNDPAHFFTYLFTALQNIGPNIGSGIYPLFHSPQPLSIELMISTLLHEIIAIS 124 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 +P LV DDYH++ + +++ F + P + LV+ +R P+L +A LRVR+QL E+ Sbjct: 125 NPFVLVFDDYHVLKTGPLDDAISFLLERMPRQMHLVIATREEPRLPLARLRVRNQLNEVR 184 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 L FT+ EA +F + + + + + GW LQL ALS ++ Sbjct: 185 VSDLRFTYSEAAEFLEKVMEVELSPENIALLEARTEGWIAGLQLAALSIKEQI----DVE 240 Query: 241 RRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN----- 293 L + SH + DYLV+EVL +T+ FLL ++IL ++ L V + + Sbjct: 241 AFLPSFSGSHPFILDYLVEEVLTQQSASTQAFLLHTSILDRLSGPLCDAVFSQSDMCLGS 300 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAA-------ELPEIHRA 346 GQ LE +ER LF+ +D W+ YH LF + LRQR + +++ L E+H Sbjct: 301 GQETLEFLERANLFIVPLDSERRWYRYHHLFADLLRQRLRQRVSSITGEGERILAELHTR 360 Query: 347 AAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEES--------LK 398 A+ + GF EA HHA+AA D L+ A L + LL L+ Sbjct: 361 ASIWYEDNGFEMEAFHHAVAAND--------LSRAARLVEGERMPLLFRGGVVPVLNWLE 412 Query: 399 ALPWDSLLENPQL-VLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDT----MHAEFNA 453 +LP + L P L V+ + L+ + G LLA AE ++ + +D A Sbjct: 413 SLPREELDVRPALWVMYASALLMTGQITGVEPKLLA-AEKAMQGMGQDAGARDTLGHIAA 471 Query: 454 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ 513 +RA +A++ +E AK AL L P R T LG H +G T + Q+ Sbjct: 472 IRATLAVSMHQAEEIMAEAKRALAYLHPDNLPVRTATTWSLGYAYHLQGNRTAATKAYQE 531 Query: 514 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE-QLPMHEFL 572 ++++ + + + +++ A L A ET + +L L H L Sbjct: 532 ALSISKKIGHVVITMMATLGLAKLQEADNQLHMAAETYQHVQKLAGSPPLPAACEAHLGL 591 Query: 573 VRIRAQLLWAWARLDEAEASARSGIEVLSSY-QPQQQLQCLAMLIQCSLARGDLDNARSQ 631 RI + W L AE + I++ Q + + L + LA+GD+ A + Sbjct: 592 ARI----FYEWNDLHTAELHGQQSIQLARQLEQTDRVVAAQVFLARLKLAQGDVSGAATM 647 Query: 632 LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 691 L E + + A +I Q AAA LRH Sbjct: 648 LANAEYVARKQGFVMQMPPIAEVQVLILLQQDNLTAAARLALRHDLP------------- 694 Query: 692 RNIARAQILL--GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA-GRKSDAQ 748 I +A++LL G+ A VLE L A + + + D ++LL + Q G ++ A Sbjct: 695 --ILQARVLLAQGDTSAALAVLEPLLVQAEA-KQIEDERLKIMLLQAVALQVQGDQAKAA 751 Query: 749 RVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRH 808 +++ D L +A GFI FV EG Q+++++ T+ + +++L E HH Sbjct: 752 QIMKDVLVIAEPGGFIRTFVDEG----SQMKRILHDATVHRMLPRYIEKLLAEFEPHHA- 806 Query: 809 KFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIK 868 ++ +E PL++RE ++L LI G SN IA +L +A +T+K Sbjct: 807 ------DSLIE---------------PLSERELEILQLIEKGLSNRDIAQQLFLALSTVK 845 Query: 869 THIRNLYQKLGVAHRQDAVQHAQQL 893 H RN++ KL V R +AV A+QL Sbjct: 846 GHNRNVFDKLQVQRRTEAVARARQL 870 >UniRef50_B8CZU7 Regulatory protein LuxR n=3 Tax=Firmicutes RepID=B8CZU7_HALOH Length = 887 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 237/907 (26%), Positives = 414/907 (45%), Gaps = 75/907 (8%) Query: 10 PVRLDHTVV-RERLLAKLSGA--NNFRLALITSPAGYGKTTLISQWAA-GKNDIGWYSLD 65 P L ++ RERLL KL+ N +L L+++PAGYGK+TLI+ W K W S++ Sbjct: 21 PAPLPSGIIHRERLLNKLAEGRKNGTKLILVSAPAGYGKSTLITDWLVRDKIKHAWLSIE 80 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 + DN+ F YL++++Q+ + G ++ Q + L + L EL +PL + Sbjct: 81 DEDNKLVPFFEYLLSSLQEISEGFGKTIRSILASPQLPPINVLISLLIQELEALPAPLTI 140 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 V+DDYH I+N I++ + + + H P + LV++SR P + + LR +QL EI + L Sbjct: 141 VLDDYHFISNRQINQGISYLLEHLPLDFKLVIISRQDPPIPLGRLRANNQLTEIRMKDLK 200 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS-ARRLA 244 F QEA FF+ L + E S + GW + LQL LS +++ K + Sbjct: 201 FNKQEASSFFEENLQIALNEEEVSLLNSRTEGWVSGLQLAGLSLKESAEGERKVFIDNFS 260 Query: 245 GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQ 304 G N + DYL +EVL + FL K+++L ND++ R+T + N + + E+++ Sbjct: 261 GSN-RFVIDYLFEEVLVRQKPEVKDFLCKTSVLNKFNDSICNRLTEDSNSKSVITELDKG 319 Query: 305 GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHA 364 F+ +D W+ YH LF +FL E E +H+ AA + +G+ EAI+H+ Sbjct: 320 NHFIIPLDVNKSWYRYHHLFRDFLTSELSLE---EKKGLHKKAASWYDERGYLHEAIYHS 376 Query: 365 LAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 A D +L ++ LFN E+ L E L+ LP L +N +L++ + W + + Sbjct: 377 READDLDLLERLITKLTIDLFNKGEVETLLEYLEYLPEKRLKKNSKLLIFKTWCLFLTGK 436 Query: 425 YGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF 484 E+ L + + D+ + F AL + N + AE+ A++ + Sbjct: 437 GREIAGYLQLIKDREDINKNDSYYGLFLALIVLFDHQEKNLEMAEK----AVDMIDNKEH 492 Query: 485 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 544 + RI A LG+V G+ + ++ ++ + ++ D + +LI + + Sbjct: 493 FFRIAALLSLGQVQASMGKYSEAVITFKEAMNIGKKTDFHFGTITALINLA--------V 544 Query: 545 QTAWETQEKAFQLINEQHLEQ--------LPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 W Q K LI E L + P+ + L + +L A + + G Sbjct: 545 NLNWLGQRKEAVLICENSLYEYTDSRGKIYPLANLIYIPLGILKYENNQLKSAYSYLQKG 604 Query: 597 IEVLSSYQPQQQLQCLAM----LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 I + Q ++ + + + Q A G + A + + N LG I Sbjct: 605 I---TFCQEWSFVRIMGLGEWYMGQTLFALGKKEEAIEFVEEIIN-LGKQLGLKGLIFFM 660 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-LQGQWRNIARAQILLGEFEPAEIVL 711 N + + +K A W K F + + G + ++LL + + + Sbjct: 661 NCLEADLYVKADNKEKAFLWAEEIKK--FPDQMITISGIFMGFTYTRVLLSQRK-----I 713 Query: 712 EELNENARSLRLMSDLNRNL----LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 EE++ + + RNL LL ++ + G+K+ A + L++A+KLA G+ F Sbjct: 714 EEVDSILSRINNLGVKGRNLITVRLLQTKISYLEGKKNKALKCLVEAVKLARPEGYTRAF 773 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHF-DENFVERLLNHPE 826 + EGE + + L ++ + + + I + K + F ++N +E Sbjct: 774 LDEGEVIYKLLSEV----------KDVSPAFITGILEAFDFKKSTFNNQNLIE------- 816 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 PL++RE ++LGLI +G SN++IA +L + T K HI N+Y KLGV R A Sbjct: 817 --------PLSERELEILGLIVNGLSNKEIAKKLYITVGTTKWHISNIYGKLGVNKRAQA 868 Query: 887 VQHAQQL 893 ++ A QL Sbjct: 869 IKKALQL 875 >UniRef50_A1U0Z9 Regulatory protein, LuxR n=2 Tax=Marinobacter RepID=A1U0Z9_MARAV Length = 916 Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 251/926 (27%), Positives = 412/926 (44%), Gaps = 52/926 (5%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DI 59 ML+ +K RP V R+RL L + RL L+ +PAGYGKTTL+SQW AG + Sbjct: 1 MLLTTKFLRPTPDSRAVQRQRLDTLLQPESGKRLNLVIAPAGYGKTTLVSQWCAGNSMPT 60 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLDE D++ +F Y+I A + A C+ + ++ LT L LA Sbjct: 61 AWLSLDEQDDKPRQFWQYVIGAFEHAGLIGLEDCKKLLARQDDDELTPAITGLLNVLAAD 120 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 + LV+DDYH+I+N +H + +F+ + P + + + SR P L +A RVR Q+ +I Sbjct: 121 GNAWSLVVDDYHVISNDTLHRQLAWFLDYLPPGILVTLASRTEPPLPLARWRVRRQVQDI 180 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 LAF+ +E ++FF ++ + + IC GW A+QL AL+ ++ A Sbjct: 181 HPGLLAFSEEECQEFFRSTMAMELSEDDIRSICRKTEGWVAAMQLSALAGKKE---AVLP 237 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 + L ++ +SDY++ EVL+ + + FLL++A + L V ++ Q +L Sbjct: 238 GQALGSPDSRLISDYVLTEVLEQLPEDLKDFLLETACCPRLCAPLCNAVRQRQDSQEKLS 297 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + Q LFL +D++ EWF YH LF L QR Q + E+ A + + G E Sbjct: 298 SLLSQNLFLIPLDNSNEWFRYHDLFREALLQRIQSAAPSHASELQSRAIDWLLRHGHVQE 357 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 I + D L +L H +L + + E L A+P + ++PQL +L+ W + Sbjct: 358 GIVQIVRRNDTDHLAAVLAEHGNNLIHGGYHLPVLEWLDAIPAHKIQDSPQLQMLRIWGL 417 Query: 420 QSQHRYGEVNT----LLARAEHEIKDIRED-----TMHAEFNALRAQVAINDGNPDEAER 470 +R ++ + + + D D +H+E + +R+ +A + A Sbjct: 418 FFANRVESLDPLLLEVEDLLDRRVADSHPDAEGALALHSEISLVRSYLARTRNDEKNASD 477 Query: 471 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 L + L+++ + V LG KGEL + ++ + L S Sbjct: 478 LTRQVLKDIDQISIPLKSVTYYGLGLDYFGKGELNDAEEALESAVHYGQVERKASTVLSS 537 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV------------RIRAQ 578 + I + +G A ET + Q ++E + + P L+ R R Q Sbjct: 538 GGLLAWIQYHRGDTDLALETTGRVRQWVDEHYAD--PSQPRLISCWQNSALTEIYRERNQ 595 Query: 579 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 638 + A L R G E P Q + + + RGDL+ A + LE+ Sbjct: 596 ISTADGYLAPLLDHVRKGTE------PGQHVVIQYVRGHLAFTRGDLETA---VEALEDA 646 Query: 639 LGNGKYHSDWI----SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 694 + G+ + I A+ + + +G A L+ T N + + Sbjct: 647 VTTGRRRREHIVFEPPAASALLARCYLSSGHAEKARACLQSTLDQPATNPLNREQNQIAL 706 Query: 695 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA----GRKSDAQRV 750 AR Q LGE++ A+ L L A + NR+L+ + +Y +A GR ++ + Sbjct: 707 ARVQNALGEYQQAQDTLSALIPAAER----NAHNRHLVEILLVYAEALAHEGRNDESDAM 762 Query: 751 LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREI--NQHHRH 808 L AL A GF+ F E A+ + L +L T P +LR++ Q Sbjct: 763 LEKALDRAENAGFLRLFAEESTALREMLLDFPRLRT-PGRWNRELLGMLRDLAAGQPGEA 821 Query: 809 KFAHFDENFVERLLNHPEV-PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTI 867 F E + P P PL+QRE +VL LI+ G +N++IA + VA T+ Sbjct: 822 SFNSSQEAYHPIDTARPGGEPVNALAEPLSQREQEVLALIHQGLANKEIAERMSVAPATV 881 Query: 868 KTHIRNLYQKLGVAHRQDAVQHAQQL 893 K HIRNLY KLGV+ R +A+ A+++ Sbjct: 882 KAHIRNLYGKLGVSRRTEALAKAREV 907 >UniRef50_A4BAG8 ATP-dependent transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BAG8_9GAMM Length = 873 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 238/900 (26%), Positives = 424/900 (47%), Gaps = 72/900 (8%) Query: 28 GANNFRLALITSPAGYGKTTL-ISQWAAGKND-----IGWYSLDEGDNQQERFASYLIAA 81 A L ++ +PAG+GKTT + + A K+D + W SLD D+ FA+Y I+A Sbjct: 7 AACKLPLVVLCAPAGFGKTTAALHGFQALKDDEPEARMAWLSLDPEDSDPFNFAAYFISA 66 Query: 82 VQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHES 141 + + +C + R L SLF QL EL H L +V+DDYH I + +H + Sbjct: 67 IAKQVRLSDQLCHSGVHDRN-TQLKSLFGQLLFELDRIHQRLIVVLDDYHAIDSEEVHAA 125 Query: 142 MRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFD-CRLS 200 + + +H P ++TLV+ +R+ P I +LR++ + ++ + L F EA+ FF Sbjct: 126 VAYLAKHLPPHVTLVLTTRSDPPASIMSLRLQGLVADMSADLLGFNVAEAQTFFQQVGAG 185 Query: 201 SPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR-RLAGINASHLSDYLVDEV 259 ++ + R+ + V GWA LQLI L + AR +NA DY EV Sbjct: 186 FQLDEGDVKRLLEHVEGWAVGLQLIVLGLKSKPSYDELKARLEQKDLNAI---DYFDSEV 242 Query: 260 LDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFC 319 D++ + F+L +++++ N + + + N LE ++RQ LF+ + ++ +WF Sbjct: 243 FDSLPEDVKRFMLSTSVVKRFNAEVAEALAEDVNVHEVLEYLQRQHLFIVQFNEPQQWFR 302 Query: 320 YHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLN 379 YH L +FL+ + + ++ E+H A+++++ G+ A+ HA+ + D + DIL Sbjct: 303 YHHLLRDFLKHKLITQSGGDVRELHHKASQAFLKMGYIVGAVDHAIRSQDQKQITDILRT 362 Query: 380 HAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEI 439 + L + + L++ L L +++ + QL L+ W+ V+ +L AE I Sbjct: 363 YGNDLNHKAHYDLVKRCLAELSDETISSDTQLTLVSCWVESIYGDPNRVDHILTMAEAHI 422 Query: 440 KDIREDT--MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 497 ++ D+ + AE+ +R+Q + G+ AE+ A+ AL EL P R + V Sbjct: 423 ENDNADSRQLRAEYQTVRSQAYFSMGDFVGAEQAAREAL-ELFPDNNTRRQSPLLIYANV 481 Query: 498 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL-----FAQGFLQTAWETQE 552 +GEL R+L++ +++E ++RQ LWSL QQ++I FA+ + A E QE Sbjct: 482 KFEQGELDRALSIYEESELLSRQEANHDAVLWSLNQQAQIWKQRCDFARS-ISLAKEVQE 540 Query: 553 KA------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 600 A F L N+ +L + + +R A+LL ++E ++ E Sbjct: 541 YAAQHNVNSGFNACFSLFNQA---ELALEAYHLR-EARLL-----INEVGLLCQNWDEFW 591 Query: 601 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 S + L++ + +G AR + E +L I + +V+++YW Sbjct: 592 SQH-------LFGWLLKMEMLKGKPTVARDLAAQHEGILARENVAEHLIPYSMEVQLLYW 644 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL----LGEFEPAEIVLEELNE 716 D WL+ A P H ++ I RAQI G ++ A + LE++ Sbjct: 645 WQNEDIKKIETWLK--ATPPVDKFHSMRDYV--ILRAQIYGHIACGRYQEASMRLEQVYS 700 Query: 717 NARSLR---LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 R + R LL L ++S+A L+ L L + ++ + + Sbjct: 701 PLREFEGRPYQLEFIRLGLLHVALLNLQNKESEAMTELMLLLPLIQQYSIVASILFLRQ- 759 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 L + + ++ LPE + +++L I R+ + E EVP+ + Sbjct: 760 WVMPLFEKMDVDALPEDQARFVEQLL--ILYKQRNTSSRRGEE---------EVPDGLLA 808 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 ++++EW+VL I G SN+ IA + +A +T+KTHI NLY+KL VA+R++A+ ++L Sbjct: 809 LGISKKEWRVLQYIIDGKSNDDIAQTMFIAVSTVKTHINNLYKKLSVANRKEAIALGKEL 868 >UniRef50_B0C3T1 Transcriptional regulator, LuxR family with TPR repeats n=4 Tax=Bacteria RepID=B0C3T1_ACAM1 Length = 924 Score = 251 bits (641), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 261/951 (27%), Positives = 418/951 (43%), Gaps = 102/951 (10%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND--I 59 L+ +KL RP V R RLL ++ +L L+++PAG+GKTTL+++W A D + Sbjct: 14 LLETKLYRPKWRPGLVSRPRLLERIH--KERKLTLVSAPAGFGKTTLLAEWVAAVPDQLV 71 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLD+GDN F +YLI A+Q+ +G ++ Q Q + S+ A L E+ Sbjct: 72 TWVSLDQGDNDSAFFWAYLITALQKINSGLGERSLSLLQSPQPPPIESVLAILINEINGV 131 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L L++DD+H+I N + E++ F + H P L L++ SR P L +A LR R +L E+ Sbjct: 132 EDNLTLILDDFHVIENRGVQEAITFLLDHLPFQLHLIIASRTDPPLPLARLRGRGELTEL 191 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L FT EA F + + I A+ + + GW LQL ALS Q + Sbjct: 192 RAADLRFTSNEAAAFLNRMMGLDISPADIAALETRTEGWVAGLQLAALSM-QGREDIPEF 250 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 +G + ++ DYL++EVL R FLL++A+L ++ L VT ++ Q L Sbjct: 251 IAAFSG-DDRYIVDYLLEEVLQRQCDRVRTFLLQTAMLERLSGPLCDAVTNQQGSQTMLA 309 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 ++ER LF+ +D+ +W+ YH LF + L+ E L +HR A+E + Sbjct: 310 DLERDNLFVVPLDNKRQWYRYHHLFADVLQAHAIAEQLEHLSILHRRASEWYEQNNQLFH 369 Query: 360 AIHHALAAGDALMLRDILLNHAW-SLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 AIHHALAA D L+ W ++ + S + +K+LP P L ++ A + Sbjct: 370 AIHHALAAKD-FERAASLIERIWPTMRQRQQESTVFGWMKSLPNSVFHNRPVLSVVYALV 428 Query: 419 MQSQHRYGEVNTLLARAEHE-----------------IKDIREDTMHAEFNALRAQVAIN 461 + + G+++T AR ++ + D++ ++ A RA A Sbjct: 429 LLND---GQLDTAEARLQNAERWLDKDTESPAVERVVVDDLQFRSLPASIANARAYRAQA 485 Query: 462 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL-------TRSLALMQQT 514 G+ A+ AL LP Y R S+LG G L + LA+ Q+ Sbjct: 486 LGDVSSTITYAQQALALLPEDAAYERGTTASLLGLAYWASGNLEAAHLSFAKGLAIFQKI 545 Query: 515 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 574 + A+ + + I QG LQ A T E+A QL EQ E R Sbjct: 546 GGV-------QIAIGGTLILAHIRRGQGRLQEAIRTCEQALQLATEQ-------GEPGRR 591 Query: 575 IRAQLLWAWARLDEAEASARSGIEVL----------SSYQPQQQLQCLAMLIQCSLAR-- 622 A+LL A + L + + ++L ++ L C ++Q L Sbjct: 592 GTAELLMALSELHYEQGDLETASQLLLQGEELREQATTLPGADHLWC---VVQAHLKESL 648 Query: 623 GDLDNARSQLNRLENLLGNGKYHSDWISNANKV---RVIYWQMTGDKAAAANWLRHTAKP 679 GDL+ A LN E YH I + V +V W G + A +W Sbjct: 649 GDLEEAFKLLNEAER-----SYHRIPIPDVRPVAALKVRMWVRQGQLSEALSWANERQLS 703 Query: 680 EFANNHFLQGQWRNIARAQILLGEFEP-----------AEIVLEELNENARSLRLMSDLN 728 + +L+ ++ +I ++L+ + ++ + L+ AR L++ Sbjct: 704 VEDDLSYLK-EYEHITLTRVLIARYRSDGQRSAQGHCRDNVIHQVLDLLARLLQVAQAAG 762 Query: 729 RNLLLLNQLYWQA------GRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLI 782 RN +L+ L Q G A L AL LA G++ F EG +MA+ LR++ Sbjct: 763 RNGSVLDILVTQGLAYEVLGDVERAISPLKCALTLAEPEGYVRIFAQEGTSMAELLREIA 822 Query: 783 QLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQ 842 P R L Q + + L+ PL+QRE Sbjct: 823 ARGITPGY-TGRLLTALETWGQKREDQAVSPISASAQSLVE-----------PLSQRELD 870 Query: 843 VLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 VL L+ + S +IA EL VA +T++TH +++Y KL V +R+ A++ A L Sbjct: 871 VLRLLRTDLSGPEIARELVVALSTVRTHTKSIYSKLNVNNRRAAIKRATAL 921 >UniRef50_A9WHL2 Regulatory protein LuxR n=3 Tax=Chloroflexaceae RepID=A9WHL2_CHLAA Length = 890 Score = 249 bits (637), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 275/942 (29%), Positives = 424/942 (45%), Gaps = 117/942 (12%) Query: 1 MLIP---SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN 57 M IP +KL P D V R RL ++ A N RL +I +P G+GKTT+++ W A Sbjct: 13 MPIPILQTKLHPPSLADCFVPRPRLTERIHTALNNRLTIIAAPPGFGKTTVMAAWLATNT 72 Query: 58 --DIGWYSLDEGDNQQERFASYLIAAVQQA---TNGHCAICETMAQKRQYASLTSLFAQL 112 ++ WYSL+E DN F + + AA+Q + A+ +A R+ +L L Sbjct: 73 SENVAWYSLEEDDNDPICFFTCIAAALQTVAPVSALESALGAAVANPRELT--VALLNDL 130 Query: 113 FIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRV 172 F+ + LV DDYH IT IH+++ + I H P N+ LV +SR P L + RV Sbjct: 131 FVFS---DRSVVLVFDDYHHITRQPIHDALVYLIDHLPNNIHLVFISRVDPPLPLGRWRV 187 Query: 173 RDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQN 232 R QL EI + L FT EA QF + + + A + + GW LQL ALS +++ Sbjct: 188 RGQLTEIRADDLRFTEAEAAQFLNQTMGLSLSAEAIRTLEERTEGWVAGLQLAALSLQKS 247 Query: 233 THSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEE 292 ++ A AG N +++DYL DEVL + R FLLK++IL N AL + Sbjct: 248 SNPGQIIAA-FAGSN-RYVADYLTDEVLARQPESLRDFLLKTSILERFNAALCNHLLQCV 305 Query: 293 NGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWM 352 + L ++ER LF+ +D W+ YH LF + L++R A + ++HR AAE + Sbjct: 306 CSESILTDLERANLFIIPLDSDANWYRYHHLFADLLKRRLAQANPAGITDLHRRAAEWFE 365 Query: 353 AQGFPSEAIHHALAAGD-----ALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLE 407 F +AI H +AA + ALM R L+ +W H+EL+ L ++ALP L + Sbjct: 366 QNNFTLDAIRHWIAADEPERVAALMERT--LSQSWG---HAELAGLMHRIEALPDTVLAK 420 Query: 408 NPQLVLLQAWL-MQSQHRYGEVNTLLARAEHEIKDIREDTM-HAEFNALRAQV--AINDG 463 P L W + + LL RAE +KD + + F +R+ + A+++ Sbjct: 421 YPILSAFLGWTWLWLGYDNARTLPLLERAERNLKDEPQASYARGRFQVIRSYIARAVHND 480 Query: 464 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 523 P A LA+ AL++L R A S + V H G L L QTE+ Sbjct: 481 AP-HAWLLAEQALQQLAEHDLLWRGFAQSNIAIVTHSMG-----LGL-AQTER------- 526 Query: 524 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM---HEFLVRIRAQ-- 578 + + + A G TAW + Q++ E Q M + I Q Sbjct: 527 ------AYNEAIRLCRAAGDPTTAWIAECARVQVVRECGDLQRSMTLNRRLIDMIERQGA 580 Query: 579 --LLWAWARLDEA--------------EASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 622 L+ W +++A E + ++ SS P L+ A+L + L Sbjct: 581 PALVRGWVHINQALGYYLINDLKHAWLEVNMTQNLQTQSSGMPDVSLRLYALLTRLELLN 640 Query: 623 GDLDNARSQLNRLENLLGNGKYHS--DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 680 G+ AR + L L G + DW A VR D AA ++ R P+ Sbjct: 641 GNEAAARQAADDLVTLAYRGGVTNAIDW---AYAVRAELMFRLKDWAAFDSYARTYQPPQ 697 Query: 681 FANNHFLQGQWRNIARAQILLGEF---EPAEIVLEE--LNENARSLRLMSDLNRNLLLLN 735 F + + + + + L + E +V E+ L A + +L+ LL Sbjct: 698 --QPLFFPYRLQTLLQVRYLTRQKAWNEGRRLVAEQVRLAREAGYVEYEMELHIVSALLE 755 Query: 736 QLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRA 795 Q +AG S A +L AL++ G++ F+ EGE M L Q+ HR Sbjct: 756 Q---KAGNPSVAMNMLGRALEIGKANGYVRIFLEEGEEMRHLLTQI-----------HRL 801 Query: 796 QRILREINQHHRHKFAHFDENFVERLLNHPEVP-ELIRTS---PLTQREWQVLGLIYSGY 851 +R ++FV LL P +++++S PLT+RE +VL LI G Sbjct: 802 RR-----------------DDFVAELLAAFGKPAQVVQSSLIEPLTEREIEVLRLIAEGL 844 Query: 852 SNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 SN +IA +L ++ T+KTH++++Y KL V R A A++L Sbjct: 845 SNPEIAEKLVLSVGTVKTHVKHIYGKLNVDDRVKAAGMAREL 886 >UniRef50_Q396V4 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Burkholderia RepID=Q396V4_BURS3 Length = 913 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 235/914 (25%), Positives = 394/914 (43%), Gaps = 62/914 (6%) Query: 10 PVRLDHTVV-RERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND----IGWYSL 64 P RL +V R RL+ A + RL +I +PAG+GKT+L W GW SL Sbjct: 22 PPRLPAGLVDRPRLVELAETAESKRLTVIQAPAGFGKTSLARLWLDCLRTRGALAGWLSL 81 Query: 65 DEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLY 124 D GD++ RF Y A+QQA G I ++ ++ + L EL + LY Sbjct: 82 DVGDDEPARFFHYFAQALQQAC-GDIGIAAGLSADASLLPPDAIVSTLINELVDVDDELY 140 Query: 125 LVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQL 184 L IDDYHLI +P IH + +FI H P + +V+ +R P L +A LR ++L+EI + +L Sbjct: 141 LFIDDYHLIGSPAIHAGVAYFIDHAPSQVHVVICTRTEPPLPLARLRAHNELMEIDAAEL 200 Query: 185 AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 F+ E + F + A + GWA AL++ A ++ H A R+ Sbjct: 201 RFSFDETQSFVRRECPGTLADATVKSLFVSTEGWAAALRIAASVLKRGGAPGHDGAARIP 260 Query: 245 GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQ 304 + + YL + +L+ + F+L++++L ++ L VTG + L+ I + Sbjct: 261 SGASRPFAAYL-EGMLERLPADLVDFMLRTSVLDRLSAPLCEAVTGVATSRPMLDTIVAR 319 Query: 305 GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHA 364 L LQ +D GEWF YHPL +LRQR + +P++HR A+ + +Q ++A+ HA Sbjct: 320 QLLLQPLDQDGEWFRYHPLMAEYLRQRLATQCPDAIPDLHRRASRWYASQALWTDAVTHA 379 Query: 365 LAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 LAAG ++ + A +L +L L + P D + ++ L AW M R Sbjct: 380 LAAGARDEAVALMAHCAMTLVMRGDLLTLLGWQRQFPADLMQGQVRVSLAIAWGMALAMR 439 Query: 425 YGEVNTLLARAEH------EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 + + +L E + DIR E A+R+ +A +P A LA+ L+ Sbjct: 440 FDDALAMLDAIERTPGAGVDPADIRH-----ECQAVRSVIAALQDDPRRAFALAQPCLDR 494 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 + + +V+ V H K +L Q + +++ L Sbjct: 495 PSTDTWTTNVVSNVV--RFGHWKAGNLEALYATPWIPQSGDDRRLVFASVYRLSLLGHAE 552 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 Q + A +A QL Q + Q+ + RLDEA A + Sbjct: 553 MQQMHFELAERYFSEAMQLGTRHCGPQSISVAICAPMLGQIRYEQGRLDEARALVIDLMP 612 Query: 599 VLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL---GNGKYHSDWISNANK 654 V+ + L +LI+ ++AR + +A + L+R + L G + + + + Sbjct: 613 VIDVAVLLDSLLTAYKLLIRIAIARAEFPHAYALLDRAQALAHARGWPRLTAAVLVERTR 672 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEIVLE 712 + + ++T A + R A + +R + A + + + + Sbjct: 673 LHIAEGRLTEAAACVMQFDRLAGGDRGAQVDTSLEIDTYRALVTACVATARND-LQGAVA 731 Query: 713 ELNENAR--SLRLMSDLN---RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 L++ R SLR L + +L L QL + G ++ A + L++A G Sbjct: 732 ALDDGLRCASLRHSDYLALRLKTVLALVQL--RGGERAAALDTFAEVLEVAEPAGIYRSI 789 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 V +G + + L+ + +Q RA + R + A ++ERLL+ Sbjct: 790 VDQGPEIGELLQAM--------RDQARA-------SSQTRDRLA-----YIERLLDGCRA 829 Query: 828 PELIRTSP--------LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 P L+ RE ++ LI G SN++IA L +A T+K+HI++L+ KL Sbjct: 830 QYQQDAQPARAAQRDMLSVRERDIVELIAHGQSNKEIARTLGIAPETVKSHIKSLFMKLE 889 Query: 880 VAHRQDAVQHAQQL 893 V R AV AQ L Sbjct: 890 VDKRARAVAVAQSL 903 >UniRef50_A9B4I5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4I5_HERA2 Length = 876 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 254/943 (26%), Positives = 426/943 (45%), Gaps = 122/943 (12%) Query: 1 MLIP---SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-AAGK 56 M IP +KL P + V+R L+ +L A++ L LI++PAG+GK++L+S W A + Sbjct: 1 MPIPILATKLHIPQLRPNGVMRSHLIQRLDAASHASLNLISAPAGFGKSSLLSAWHATSQ 60 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W +LDE DN RF SY + A+Q + + Q ++ L EL Sbjct: 61 RPMAWLALDERDNDPSRFFSYFVHALQTLIPTLSSASLRLIHT-QPPAIEQALTNLINEL 119 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + S + LV+DDYH+I N I +++ F + H P +L L++ +R P L +A LR R QL Sbjct: 120 SVVGSSVSLVLDDYHVIENHAIDQALSFLLEHLPASLRLIIATREDPNLPLARLRARGQL 179 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 E+ S L F+ EA+ F + + + A+ + + + GW LQL ALS +Q T Sbjct: 180 HELRSADLRFSLDEAQLFLNQAMGLALSPADVAALENRTEGWIAGLQLAALSMQQQT--- 236 Query: 237 HKSARRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILR----SMNDALITRVTG 290 +R +A + SH + DYL++EVL A + FLL+++IL S+ DAL++ G Sbjct: 237 -DRSRFIASFSGSHHFVMDYLLEEVLQQQTPAVQQFLLQTSILNRMCGSLCDALVS--NG 293 Query: 291 EENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE----LPEIHRA 346 +GQ LE++E+ +F+ +D W+ YH LFG LRQR Q LA + L ++H Sbjct: 294 TNSGQQMLEQLEQANMFIVPLDHERRWYRYHHLFGELLRQRLQRSLAQQATTSLEQLHIQ 353 Query: 347 AAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLL 406 A+ + A EA HA AA D ++ L L + L+ALP + L Sbjct: 354 ASIWFEANELELEAFEHAAAANDTERAERLIEGKRVPLQFQGALLPIMAWLQALPTNVLN 413 Query: 407 ENPQLVLLQA--WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFN-------ALRAQ 457 + P L + A WL G+VN + R + + I + + + + A+R Sbjct: 414 QRPSLWVTAAAVWLA-----TGQVNGIEQRLQAAEQAIDQHPLTPKLHDLIGRIAAIRGT 468 Query: 458 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM 517 +A++ + + +K ALE L R LG +G+ + + +Q + Sbjct: 469 LALSQNDASQIIAQSKRALEYLAIDNLSFRTSTVWKLGYAYQLQGKRSAAKQAYEQAISI 528 Query: 518 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR- 576 ++ + + I + + L+ A T + Q++ LP + Sbjct: 529 GQRSGNLVTVVLASIGLGNLQESNNQLKLAATTYQ---QVLEASRQLALPAANCGAELGL 585 Query: 577 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 636 A++ + W +LD+AE + + Q Q LQ + C + + L A++QL++ Sbjct: 586 ARIYYQWNQLDQAEQHYQRAL------QAAQLLQHTDREVACYVIKARLLIAQNQLDQAS 639 Query: 637 NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-----EFANNHFLQGQW 691 LL +AAA+ RHT +P E ++GQ Sbjct: 640 LLLEQA------------------------SAAAHQHRHTTQPAKIAAEQVRIGLMRGQV 675 Query: 692 RN-----------IARAQILLGEFEPAEIVLEELNENARS-LRLMSDLNRNLLLLNQLYW 739 + I++AQ+ L + +P+ + + D + + +L L Sbjct: 676 QQASQIAQTHQIPISQAQVFLAQQQPSAALALLQPALTIAQTNSWHDQSLWIKVLQSLAL 735 Query: 740 QAGRK-SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRI 798 A + AQ+VL +L A GF+ F+ +G+A+ Q + Sbjct: 736 AALEDYAQAQQVLKPSLISAEPEGFVRVFLDQGQAI---------------------QNL 774 Query: 799 LREINQHHRHKFAHFDENFVERLLNH---PEVPELIRTSP-----LTQREWQVLGLIYSG 850 L IN +N+V ++L H +P+L T+P L+QRE ++L LI G Sbjct: 775 LSHIN------LTTSSKNYVNQILAHFTTERMPQLYPTTPSLPEMLSQRELEILSLIAQG 828 Query: 851 YSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 +SN+ I +L +A T+K H R +++KL V R +AV A++L Sbjct: 829 HSNQAICQQLHLALDTVKGHNRRIFEKLQVQRRTEAVARAREL 871 >UniRef50_Q0K1J2 Transcriptional regulator, LuxR-family n=1 Tax=Ralstonia eutropha H16 RepID=Q0K1J2_RALEH Length = 924 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 245/955 (25%), Positives = 412/955 (43%), Gaps = 135/955 (14%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 LI +KL+ P R H + RER + L +L ++ +PAG+GKT+L+S+W A Sbjct: 19 LILTKLA-PPRTRHYIHRERSIGLLRPGMERKLTVLVAPAGFGKTSLLSEWKKVLAQEGC 77 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 +GW S+D D+ +F +YL+AA ++A + A ++FA+L + Sbjct: 78 AVGWLSIDRDDDDLFQFGAYLLAAAREACTQAGEPIPCGLKPDPLAPADTMFAELLNAVL 137 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + LV+DD+ + +P IHE++ +R+ PENL L+V R P ++ R QLL Sbjct: 138 ALPRQMVLVLDDFDRLASPAIHEAVFRLLRYAPENLHLLVAGRGEPGFPLSYFEARGQLL 197 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQL--IALSARQNTHS 235 ++ ++ L F EA+ FF + AA+ + GWA LQL ALSA T Sbjct: 198 KLDAEALRFDSAEAQAFFSAVSGHALSAAQIEVLLRATEGWAAGLQLATFALSA---TDK 254 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 A RL S + YL + V +V + FLL++++L M+ L VTG Sbjct: 255 PDVFAERLPFARRS-VEAYLNENVFVHVPEPLQTFLLQTSVLDRMSVPLCDAVTGSSESH 313 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 E + + LF++ +D G+W+ YH LF +LR+R E E+ E+HR A+E + AQ Sbjct: 314 ATFEWLMARNLFVRPLDAEGQWYRYHALFAEYLRKRLVRERPHEVAELHRRASEWFAAQS 373 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 EA+ HALAAGD + A +L S++ + + LP +++ +L L Q Sbjct: 374 LWQEAVRHALAAGDVDRAAGWVEQCAMTLVEASDVRTVLSWVAKLPPEAVHGRLRLRLAQ 433 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIR---EDTMHAEFNALRAQVA-IND--------- 462 AW + + +L E +I R + + E A+ A +A ++D Sbjct: 434 AWALALTMQTVAAKAVLQAVEDDIGHGRLPLTEVVRVELQAVTALIAGLSDESELSLEMG 493 Query: 463 -----------------------------GNPDEAERLAK-LALEELPPGWFYSRIVATS 492 DE ERL + L L Y+++ S Sbjct: 494 RKVLALGPDTGSWEEGIGLTTQIFGLSYAAGFDEVERLRRTLTLNTGADTPIYAKVYRQS 553 Query: 493 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTA---WE 549 ++G L +G L + +Q E + R+ + + Q + + G+L W Sbjct: 554 MVGLSLFVEGRLGEA---VQTLEDVLRESNA-----RAGRQSAASVLPVGYLAAIHYEWN 605 Query: 550 TQEKAFQLINE------QHLEQLPMHEFLVRI-RAQLLW-----AWARLDEAEASARSGI 597 ++ +L++E Q P+ F V + R +LL A+ +++AEA AR Sbjct: 606 DLDRVAELLDERLEMALQSCSLGPLIGFCVTLARLRLLAGKQDEAYRIVEDAEAVAR--- 662 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 S + Q+ C A I+ S+ GD+ A + L+ L+G Sbjct: 663 ---SRQWLRMQVACKAEAIRISIGAGDIGRAARIGHDLDGLVGQ---------------- 703 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR-NIARAQILLGEFEPAEIV--LEEL 714 KP +L+ R +A ++L+G PA V L+ + Sbjct: 704 --------------------KPATLRGSYLETWQRFQVAHCRLLVGRGRPALAVPILQGV 743 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 R+ + + ++L AG++++A + + AL G F+ G A Sbjct: 744 QAEVRAAGMQYLSAQISVMLAVALHSAGQRAEAVQAMRAALTYGQANGLQRVFLDAGPAA 803 Query: 775 AQQLRQL-IQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 + L L +Q + L E+E +R+ + A D+ E + Sbjct: 804 REILDALCLQQDRLAEVEPWYVRRLCAGFDAPASEPDAADDQA------------EPVAA 851 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 S L+ RE ++L + G SN++IA + VA T+K H++N+++KL V R AV+ Sbjct: 852 SRLSAREVEILDYVARGLSNKEIARAIRVAPETVKWHLKNIFEKLKVNSRIQAVR 906 >UniRef50_A9AVE7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AVE7_HERA2 Length = 1019 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 262/952 (27%), Positives = 404/952 (42%), Gaps = 114/952 (11%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFR----LALITSPAGYGKTTLISQWAAGKN 57 L+ +KLS P VR R +++ S F L L+++ AG+GKTTLI++WA + Sbjct: 116 LLHTKLSIPA------VRSRFVSRRSIFTVFNQMLPLTLVSASAGFGKTTLIAEWARTQP 169 Query: 58 -DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W +LD DN+ RF Y + A+ + Q L+ + L L Sbjct: 170 YPLAWLTLDSNDNEPSRFWGYSLTALHMVAPLLTTEALALLHAPQAIDLSFVLTNLINNL 229 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + PL LV+DDYH I N IH + + + H P+ LV++SR P + +A + +L Sbjct: 230 MLLNQPLTLVLDDYHTINNQAIHNQLTWLLDHAPQAFRLVLISRTEPPMPLARWQAAGRL 289 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 I +L F + + +FF + + A + + GW LQL ALS + Sbjct: 290 NTILVDELRFNNSDIHRFFHTTMQLDLAADVLASLAARTEGWIAGLQLAALSLQGQPELT 349 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + N L DY EVL A + FLL++AIL + + L VT Sbjct: 350 MSEGLDSSVSNQRALFDYFSHEVLQQQPSAIQQFLLQTAILDQLCEPLCAAVTDHGATAG 409 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFL--RQRCQWELAAELPEIHRAAAESWMAQ 354 L+ +ER LF+ +D W+ YH LF L + QW AA + ++H+ A+ W Q Sbjct: 410 MLDYLERSHLFVVALDRKHHWYRYHQLFRESLLHHAKQQWG-AAGIAQLHKRAS-CWFEQ 467 Query: 355 -GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 G+P+EAI+HALAA D ++ + + E ++L+ L ALP + N L L Sbjct: 468 AGYPAEAINHALAAADFERAGRLIAKIGFRMLWRGEHTILKGWLHALPATIIEHNAYLCL 527 Query: 414 LQAWLMQSQHRYGEVNTLLARAE----HEIKDIREDT--MHAEFNALRAQVAINDGNPDE 467 AWL+ Q++ L+ + H + D +T + AL+A +A G+ Sbjct: 528 WSAWLLVEQNQLEASGYYLSLIDELLSHTMSDEAAETRAIDGHRKALQASIARRRGDMPT 587 Query: 468 AERLAKLALEELP---------------PGWFYS--RIVATSVLGEVLHCKGELTRSLAL 510 L AL LP G+ S + A + L + L C+ EL + Sbjct: 588 TLALTHQALNALPRDSALLRSMITRNLCAGYIISGDTVAAEAALHQAL-CEQELLEASIA 646 Query: 511 MQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 569 RQH LW I+ + + + QG A + + L EQH Q + Sbjct: 647 SDHHHPSERQHAHTIRLLLW--IETTSLRWLQGQFHAAADLYRQTLHLAREQH--QHAVS 702 Query: 570 EFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNA 628 Q+L W L EA + GI L+ + L L + A G+ A Sbjct: 703 AIACVNLGQILRQWNNLAEAREYLQQGIGYSLNVGADVTRRNGLIELARIQQAHGEPAQA 762 Query: 629 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT---------GDKAAAANW---LRHT 676 + + + L R + W T GD AAA W + Sbjct: 763 LATMAQAVAL----------AQTLPSPRGLLWATTWQARLQLAQGDLAAATRWAQEYQRL 812 Query: 677 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLL--- 732 A P F + + +AR I G+ + A +LE+L ++ RL S + LL Sbjct: 813 ANP-FPQFNIYDAEDLTLARILIAQGQHQQASALLEQLLPAYQAAGRLPSVIEVYLLQAL 871 Query: 733 -LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 791 L Q W S A RVL+ AL+LA ++ FV EG A++ L Q+ Sbjct: 872 NLAAQQDW-----SVAGRVLIQALRLAEPENYLRLFVDEGPALSNLLVQI---------- 916 Query: 792 QHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS----------PLTQREW 841 + + Q LR+ +V+RLL E+P PL++RE Sbjct: 917 EPQVQATLRQ---------------YVQRLLVVCELPRSTTPEQLSPIYRLIEPLSEREL 961 Query: 842 QVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 V+ L+ +G+SN++IA +L V TIKTH++N+Y KL V R A+ A++L Sbjct: 962 TVIRLLAAGFSNQEIAQQLVVTLNTIKTHLKNIYSKLAVTSRTQAIARARRL 1013 >UniRef50_A0R0L7 Transcriptional regulator n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R0L7_MYCS2 Length = 759 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 176/555 (31%), Positives = 273/555 (49%), Gaps = 33/555 (5%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA--AGKND 58 +L+ +KL P V R LL LS + RL L+++P G+GKTTL+SQWA AGK+ Sbjct: 18 VLLATKLHIPAIAGQLVHRTALLDALSQSCRSRLILLSAPVGWGKTTLLSQWALGAGKDQ 77 Query: 59 -IGWYSLDEGDNQQERFASYLIAAVQQATNG---HCAICETMAQKRQYASLTSLFAQLFI 114 GW SLD DN F Y+IAA+Q+ + G TM + + L Sbjct: 78 RFGWLSLDASDNDPVWFWMYVIAALQKISPGVGTRAVELLTMGAD----PIQVVLPTLLN 133 Query: 115 ELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRD 174 +L P+ L++DDYH++ N IHE + F + P NL +V+ +R+ P L +A LR Sbjct: 134 DLDAVARPIVLILDDYHMVVNRAIHEQVAFAVGRMPANLHVVLATRSDPLLPLARLRANG 193 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +L+E+ S L F EA Q + L + + + GWA L L ALS Sbjct: 194 ELVEMRSDDLRFGVGEAGQLLNDVLGLDLTEEDVRLLHRRTEGWAAGLYLAALSLAGRAQ 253 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 +A R AG N H+ DYL+ EVLD R+FLL+++++R N AL V + Sbjct: 254 AA-AFIRTFAGDN-RHIVDYLMAEVLDRQSPRIRNFLLRTSVMRRFNGALCDAVLQSSDS 311 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLR---QRCQWELAAELPEIHRAAAESW 351 LEE+ER+ LFL +D + W+ YH LFG LR RC+ EL +P +HR AA+ + Sbjct: 312 VSVLEEMERENLFLVPLDMSRHWYRYHHLFGELLRAELHRCEPEL---VPGLHRRAAKWF 368 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 A+G EA+ H +AAGD D+++ + LS + L LP ++ +P+L Sbjct: 369 EAEGLVDEALRHLVAAGDIAESADLIVEDWANELAGGGLSTVSGWLDLLPEGTVRGDPRL 428 Query: 412 VLLQAWLMQSQHRYGEVNTLLARAEHEIKDIR--EDTMHAEFN----ALRAQVAINDGNP 465 ++AW+ + + + + ++ + E + A + ALR A G+ Sbjct: 429 SAIRAWVALNVGLFDDARIWIEAVAAGLEGVSAAEGSARAGLSEQLVALREVYAFKIGDV 488 Query: 466 ----DEAERLAKLALEELPPGWFYSRIVATSVL---GEVLHCKGELTRSLALMQQTEQMA 518 D A + A L + E PP + + + L G++ + EL R++ L ++T Sbjct: 489 TNALDAARQAATLEVGEAPPARSAAHVTYGAALYFSGDIDEARTELQRAVELTERTGD-- 546 Query: 519 RQHDVWHYALWSLIQ 533 R+H V+ +LI+ Sbjct: 547 RRHRVYALGYLALIE 561 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 LT +E +VL L+ + S I L V+ T+KTH R +Y+KLGV +R AV ++L Sbjct: 699 LTSKELEVLRLLATRLSRRDIGQRLYVSLNTVKTHQRAIYRKLGVDNRNSAVARGREL 756 >UniRef50_C5RKV5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RKV5_CLOCL Length = 895 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 221/924 (23%), Positives = 426/924 (46%), Gaps = 70/924 (7%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKN 57 LI +KL+ P+ + R L KL+ ++RL L+T+PAGYGKTTLI+ W + K+ Sbjct: 7 LINTKLNIPILSSKVIKRTNLFKKLNSFLDYRLILVTAPAGYGKTTLITSWLSEKKKNKS 66 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATN--GHCAICETMAQKRQYASLTSLFAQLFIE 115 + W SL E DN+ E F SY +V + + HC I ++ + + A+ +L+ FI Sbjct: 67 TVAWLSLGEEDNEAECFWSYFFLSVYKKISEINHC-IEDSKSFYNESATFNNLYLSHFIN 125 Query: 116 -LAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRD 174 +A+ + + +VIDD+HLITN I E+M+F I++ P+N+ L+++SRNLPQLG+ LR D Sbjct: 126 TIAKINEGIIIVIDDFHLITNDKIIENMKFLIKNMPDNMHLLLISRNLPQLGLPRLRAAD 185 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +LEI L FT +E +FF+ + ++ + GW +Q+I LS + + Sbjct: 186 SVLEINQYDLCFTPEETTEFFEKVSGTKFTYDIYHKVWSESEGWIAGIQMIGLSMK---N 242 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 S+ G N + +Y+ +EV +++ T+ FLL ++I+ + AL + N Sbjct: 243 SSRNITGDQDGKNNKFVFEYIAEEVFLSLEEDTKKFLLYTSIIDEFSCALCDYLLDINNS 302 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 ++EIE+ LFL +D+ F YH LF NFLR++ + + ++ A + Sbjct: 303 SELIKEIEKANLFLVSIDNEQSCFRYHNLFRNFLRKQLEKLGIETIHKLFNKVARWYENS 362 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 ++A+ + + I+ + + E +L + + LP D + N +L++ Sbjct: 363 NQLNKAVESYIKGKNFHKAVSIIEQLSGEIACRGEARVLHKWNQLLPIDIVKSNTRLIMN 422 Query: 415 QAWLMQSQHRYG------------EVNTLLARAEHEIKDIREDTMHAEFNALRAQVAIND 462 AW M ++ G E + L R++ + + R+ + E AL + + Sbjct: 423 SAWAMVAEGDIGKVSEYIKMVQACEAVSFLKRSKGD--EERDSQVRVEILALNSSANLTI 480 Query: 463 GNPDEAERL---AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 519 N E E + + A+ L F ++++ ++ KGEL +++ Q++ + + Sbjct: 481 IN--EVEEIITDCEKAIPYLNEEEFLTQLIFFNI-ARAYFLKGELGKAIHYFQKSLERSI 537 Query: 520 QHDVWHYALWSLIQQSEILFA--QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 577 + ++ + L ++ ++ QG + A + E+ + P+ L A Sbjct: 538 KTKETYFRI--LTNKALTIYKKLQGNYKEAKQELEELISSLKVNGDVISPVLGILYAELA 595 Query: 578 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 637 + + W +D+A AR G+ + + + ++ + +L L NA + + Sbjct: 596 DIHYQWNEIDKAMELAREGLALGLAGEDSW------VIAENNLILAKLYNATNFHKEYQE 649 Query: 638 LLG-NGKYHSD--WISNANKVRVIYWQM---TGDKAAAANWLRHTAKPEFANNHFLQGQW 691 ++ KY +D + + K ++ G WL A P +++ Sbjct: 650 IVDKTKKYLTDNKFFDTSLKFDSFNAEIMLSKGKVNPVLAWLSDIA-PVISDDLIAIYPE 708 Query: 692 RNIARAQILLGE--FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 749 I + ++ + E F+ A ++ +++N +L L +L ++Y + G + A Sbjct: 709 VFIVKVKLYIYENQFDKARELISTIDKNVEKYQLNKVLVETKILSAKVYKKLGYIAKAIS 768 Query: 750 VLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHK 809 + A++L+ + F+ EG M L++L ++R +++ + + Sbjct: 769 EIEKAMELSWQQKITRIFLDEGSWMEDMLKKL----------KNRLSG--DDVSLYLDYL 816 Query: 810 FAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKT 869 F+ E+ + L++RE ++L + G +N +IA + V+ T+KT Sbjct: 817 LVSFNST--------SEIIIAVEDELLSKREIEILQSLEQGATNSEIAEKSFVSINTVKT 868 Query: 870 HIRNLYQKLGVAHRQDAVQHAQQL 893 H+ N+Y KL V R AV A++L Sbjct: 869 HLLNIYTKLDVHSRTRAVVKAKEL 892 >UniRef50_D1RTE8 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RTE8_SEROD Length = 950 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 240/914 (26%), Positives = 396/914 (43%), Gaps = 47/914 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW---AAGKND 58 LI +K P + R RLL +L A+ RLA++ + AG+GKTTL++QW G+ + Sbjct: 58 LILTKFVPPRSSILLLQRPRLLKRLDQAHLRRLAVVCAGAGFGKTTLLAQWHQQLIGQGE 117 Query: 59 -IGWYSLDEGDNQQERFASYLIAAVQQ-ATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W SLDE D+ +F YL+ A++ + + M ++ +SL L A L +L Sbjct: 118 RVAWLSLDEDDDDVWQFIPYLLHALRPLYADWDADFWQNMEEQAPSSSL-QLLAGLINQL 176 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 LYL+IDD+H+I + +HE++ + +RH P L L++ SR P L ++ L+ +DQL Sbjct: 177 HYCPHDLYLIIDDFHMINDAGVHEALSYLLRHAPAALHLIIGSRFHPSLSLSRLQAQDQL 236 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 +EI Q L FT +E + +F ++ P+ ++ R+ GW +++ +LS Sbjct: 237 VEIYDQDLQFTLEETRNYFSQTVAVPLSNQDALRLRSATEGWIAGMKIASLSPELREDPG 296 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 H G + ++ YL + VLD + FL+++A L +N L VTG ++ + Sbjct: 297 HLIHNLRGGTRS--IARYLKEVVLDPLPAEVLDFLMQTAFLNRLNAGLCNAVTGRDDSEA 354 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 LE IER LFL +D+ G WF YHPL L + L ++H A+ + Q Sbjct: 355 MLEWIERHNLFLSALDEQGYWFRYHPLLQETLCAALRHRADINLKQLHERASHWFAEQLL 414 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ- 415 +EA+ HALAAG + A SL ++ L ++ LP +P + LQ Sbjct: 415 WAEAVRHALAAGKPVHSPGQDGASAQSLAEEGDIDTLVSWMRHLPASV---DPSRIDLQI 471 Query: 416 --AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG---NPDEAER 470 AW + R+ E LL + + D R+ + + LR AI + N E+ Sbjct: 472 NLAWALAHYFRFDESRQLLDSLDQMVADHRDGMARSAWIKLRVVRAICEAFAENIPESLA 531 Query: 471 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 + + L E+P G + + ++L +LA+ + D +++ Sbjct: 532 IVEPLLAEVPCGDTWVDGLICNILSYCHVVNLRYAEALAVQRHMPSPDSPLDNLFVSVYR 591 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 ++ QG L+ A A + Q L + A++ + L+ + Sbjct: 592 AFIIAQCHLCQGDLENAERYAGNALRQAERYTGPQSTSGATLAPLLAEIAYERRPLESLD 651 Query: 591 ASARSGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNRLENL-LGNGKYHSDW 648 +E++ + P L +C A L + +L G A L + L + G Sbjct: 652 PLLADRLELIDRFSPPDALSRCYAYLARQALHDGMPQEAERLLEHAQQLAMSRGWRRLQA 711 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAK----PEFANNHFLQ---GQWRNIARAQILL 701 + A +VRV D+ A R + H Q Q ++R+++LL Sbjct: 712 LLLAEQVRVRL--QRADRPGAEQLQRQLEQLARHARIDAEHPCQRAIAQHAALSRSRLLL 769 Query: 702 --GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 759 G+ A +L EL + R R L + W+AG+ + A L L LA Sbjct: 770 AAGQMPQACKLLAELVTEQENRRDWLTAARLRALWSLALWKAGKNAAACTALQPVLPLAE 829 Query: 760 RTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE 819 + F+ G+ + L L H E Q + + A E Sbjct: 830 HPHLMRSFLDAGDTLQPLL-----------LHMHEGPAACNE--QGAQLRLADKGALTGE 876 Query: 820 RLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 RLL L++RE QVL LI G +N+ IA L ++A T+K H++N Y KL Sbjct: 877 RLLQSSHDVYW----GLSERELQVLRLIAEGQTNKDIARSLAISAQTVKWHLKNTYAKLN 932 Query: 880 VAHRQDAVQHAQQL 893 V R A+ A ++ Sbjct: 933 VNSRTQAMSRALEM 946 >UniRef50_C8X673 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X673_NAKMY Length = 1003 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 264/1021 (25%), Positives = 405/1021 (39%), Gaps = 180/1021 (17%) Query: 16 TVVRERLLAKLSG-ANNFRLALITSPAGYGKTTLISQW---------------------- 52 TV R RL L+ + RL LI++PAG+GKTT ++QW Sbjct: 19 TVPRPRLTEHLTDFLSGGRLLLISAPAGFGKTTTLAQWVQTLSADAATGDRTGTGPAPGQ 78 Query: 53 ---AAGKND------------IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAI----C 93 + G D + W SLD DN+ RF +Y++ A Q A+ G A Sbjct: 79 DTGSRGPGDPAVAQTTNPPAVVAWLSLDPADNEPGRFCAYVLTAFQHASPGLGADQLHRL 138 Query: 94 ETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENL 153 E A A T + A+L ++A+ + LV++DYHL+ +P +H+ + + + H P L Sbjct: 139 EQQAPATTAADATPMIAELLNDIADLPHDVVLVLEDYHLVESPDVHDQLAYLLEHAPPQL 198 Query: 154 TLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICD 213 + V +R P L +A +RVR +L EI + L FT EA + + + + + + + Sbjct: 199 HVAVSTRVDPPLPLARMRVRGELTEIRAADLRFTAAEADTYLNGLMQLGLTQPQVTALGS 258 Query: 214 DVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLK 273 GW ALQL ALS + A A + ++ DYL +EVL TR FLL Sbjct: 259 RAEGWIAALQLAALSMQGRDDVAAFIADFTG--DDRYIVDYLAEEVLARQPEQTRRFLLH 316 Query: 274 SAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQ 333 +A+L + AL +TG ++G+ LE++ER +FL +D+ W+ YH LF + LR R Sbjct: 317 TAVLDRLTGALCDALTGRDDGRRTLEQLERANMFLVALDNQRRWYRYHHLFADVLRARLL 376 Query: 334 WELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLL 393 + +P++H AA+ + P +AI HALA + D++ + + Sbjct: 377 DQQPTLIPQLHLAASRWYADDQQPEDAIRHALAGSHMDLAADLIEQAIEQSLRERTEATM 436 Query: 394 EESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIK---DIREDT---M 447 LK LP D + P L + A + V LL +AE + D DT + Sbjct: 437 RGWLKQLPPDVVAARPALGIALAGATLATGETAGVAQLLNQAEQRLNAPGDAHADTTGRL 496 Query: 448 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 507 R+ +A + A+LAL+ L G R A++++G G L + Sbjct: 497 PGWVEVYRSGLAQAQHDTRGTLTHARLALQRLDAGDSTGRAAASALVGLASWATGNLQGA 556 Query: 508 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ----HL 563 + + L + ++I QG LQ+A +T +A Q + + Sbjct: 557 HEAYTAAQSAFKATGYLTDVLGCAVVLADIRKTQGRLQSALDTHLEALQYVTTKLHAAEP 616 Query: 564 EQLPMHEFLVRIRAQLLWAW---------------ARLDEAEAS-----ARSGIEVLSSY 603 Q P + A L R + EA+ A S E S+ Sbjct: 617 TQTPPRQGPADTGAAELTGLRGIVDTYIGIADIHRERGNPTEATRLLRLAESAGE--SAG 674 Query: 604 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 663 PQ Q + + Q + A GDL+ A L + L +H D I A R W Sbjct: 675 LPQAQYRRHVVQAQIARADGDLETADQLLQNAQRLY-VADFHPDVIPVA-ATRARLWVAQ 732 Query: 664 GDKAAAANWLRHTA-----KPEF------------------------------ANNHFLQ 688 G W R A +P F A+ H Sbjct: 733 GRLDGVFAWARGRALALSDEPAFTTEYEHLTLVRAHLAHLSADLSAHLRHHHAADGHPAG 792 Query: 689 GQWRNIARAQI------LLGEFEPA---EIVLEELNENARSLRLMSDLNRNLLLLNQLYW 739 R Q+ LL E V++ L + A +LRL + N Sbjct: 793 DPNRAPGVDQVLGFLDRLLTHAEAGGRTGTVIDALIQRAIALRLAAGSRGN--------- 843 Query: 740 QAGRKSDAQ-RVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRI 798 + G+ +D R AL LA G+ F+ EG + LR ++ Sbjct: 844 RPGQGTDESLRTFHRALDLAEPQGYARTFLDEGSVVTDLLRDALR--------------- 888 Query: 799 LREINQHHRHKFAHFDENFVERLLN---HPEVPELIRT-SP-----------------LT 837 A + +V LLN H P+L T +P L+ Sbjct: 889 ------------AGLNSEYVTALLNQQPHSTTPDLTGTVAPTDAGPQTDRRMEVVVERLS 936 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMM 897 QRE VL L+ + S IA L V+ TI+TH +NLY KLGV +R+ AV+ A++L + Sbjct: 937 QRELDVLRLLATDLSGPDIARHLVVSLNTIRTHTKNLYAKLGVTNRRAAVRRAEELHLLQ 996 Query: 898 G 898 G Sbjct: 997 G 997 >UniRef50_C4X459 Trans-acting regulatory protein of aco operon n=4 Tax=Klebsiella RepID=C4X459_KLEPN Length = 921 Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 239/918 (26%), Positives = 400/918 (43%), Gaps = 53/918 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 LI +K P + R RLL LS RL ++ + AG+GKTTL++QW A Sbjct: 27 LILTKFVPPRSSIQLLERPRLLQLLSPVQQCRLGVVCAGAGFGKTTLLAQWHQQMVAQGE 86 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 I W SLDE D+ +F YL+ A++ A ++++ +S L A L +L Sbjct: 87 RIAWLSLDEDDDDVWQFIPYLLQALRPLYADWDADFWRDMEEQKLSSSEQLLAGLINQLH 146 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 +YL+IDD+H+I + ++E++ + I+H P L L++ SR P L ++ L+ +DQL+ Sbjct: 147 YCPHDVYLIIDDFHVINDRGVYEALGYLIKHAPAALHLIIGSRFHPNLALSQLQAQDQLV 206 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI + L FT +E K +F ++ P+ + R+ GW +++ +LSA H Sbjct: 207 EIYDRDLQFTLEETKHYFSRTIALPLSNHHAQRLQSVTEGWIAGMKIASLSAELQNDPEH 266 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 R + G S ++ YL + VLD + FL+K++ L +N L VTG ++ + Sbjct: 267 L-LRNMHGGTRS-IARYLKEVVLDPLPEEVLDFLVKTSFLSRLNAELCNAVTGRDDSKAM 324 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L IER LFL +D+ G WF YHPL LR Q + +++ A++ ++ Q Sbjct: 325 LAWIERHNLFLSALDEQGYWFRYHPLLQENLRTMLQQNNDIDRKQLYELASQWFVEQKLW 384 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ-- 415 SEA+ HAL+AG + A SL ++ L + LP + +P + LQ Sbjct: 385 SEAVRHALSAGKPVHSPVQDGASAQSLAEEGDIDTLISWMHHLPPST---DPSRIDLQIN 441 Query: 416 -AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG---NPDEAERL 471 AW + + E LL + + R+D + + LR AI + N E+ + Sbjct: 442 LAWALAHYFHFDESRQLLDNLDQMVLHHRDDLTRSTWCKLRVVRAICEAFAENIPESLAI 501 Query: 472 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 + L E+P G + + ++L +L + Q D +++ Sbjct: 502 VQPLLAEVPCGDTWVDGLICNILSYCHVVNQRYHDALEVQQHMPSPESPLDNLFVSVYRA 561 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 ++ QG L A EK + Q L + A++ + R D E Sbjct: 562 FIIAQCHLCQGDLGKAGWYAEKTLRQAECYTGTQSTSGATLAPLLAEIAYECQRGDSPEH 621 Query: 592 SARSGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARS--------QLNRLENLLGNG 642 +E + + P L +C LAR LDN RL G Sbjct: 622 LLADRLEFIDRFSPPDALSRCYTY-----LARQALDNDMPYEAERLLEHAQRLAVSRGWQ 676 Query: 643 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG---QWRNIARAQI 699 + + ++ +VR+ TG + + A H Q +++R+++ Sbjct: 677 RLQAMLLAEQVRVRLQRGNFTGAEQLQRQLEQMAASFRMDAEHPCQRAIVMSASLSRSRL 736 Query: 700 LL--GEFEPAEIVLEEL--NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 755 LL G+ A ++L E+ ++ +R RL + R L L W +G+ + A+ + Sbjct: 737 LLATGQAPQACVLLAEMVSDQESRGDRLTAARLRTLWSLA--LWNSGKTAAARTTFQPVV 794 Query: 756 KLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE 815 +LA + F+ G+ + Q L L +N E A R + K D Sbjct: 795 QLAEQQHLKGLFLEAGDTL-QPL--LAGMN-----ESSSACTEKRGVQGSWADKRGPVDG 846 Query: 816 NFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLY 875 P++P L++RE Q+L LI G N++IA L ++A T+K HI+N+Y Sbjct: 847 TPFNS--GSPDIP-----GELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIY 899 Query: 876 QKLGVAHRQDAVQHAQQL 893 KL V R A+ A ++ Sbjct: 900 AKLKVNSRTQAMSRALEM 917 >UniRef50_C6CXC3 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXC3_PAESJ Length = 866 Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 243/928 (26%), Positives = 390/928 (42%), Gaps = 120/928 (12%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYS 63 SKL P + V R RL L + RL L+ +PAG+GKTTL+S W + W S Sbjct: 17 SKLLVPNAASNYVDRPRLSDMLDRSGTCRLTLVAAPAGFGKTTLVSNWIGRRAARAAWLS 76 Query: 64 LDEGDNQQERFASYLIAAVQQATNGH--------CAICETMAQKRQYASLTSLFAQLFIE 115 L+ DN RF S AA+ + G + ET A+ L L ++ E Sbjct: 77 LEPADNTFVRFWSCAAAAIDRTIPGFYEAAMPIFLSFGETSAESAMSFFLNELIGRITGE 136 Query: 116 LAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQ 175 + L++DDYH I NP IH + + + H P L LV++SR +P L ++ +R R Q Sbjct: 137 M-------ILIVDDYHFIDNPSIHNGLAYLLDHLPAALHLVIVSRTVPPLPLSRMRARRQ 189 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 +LE+ + L FT EA + + + + E + + GWA L ++A + T Sbjct: 190 VLELDGRHLRFTADEAMELQNKTSETRLTPEEMTELDAKTEGWAVGL-ILAFHSLAGTGG 248 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 R G N ++ DYLVDEV+ + FLL+++IL + +L VTG + Sbjct: 249 NESFLRSFDGHN-RYVFDYLVDEVIHRQPQNVQSFLLRTSILERFSVSLCDAVTGSAHSA 307 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQ--WELAAELPEIHRAAAESWMA 353 + +E+ LF+ +DDT W+ YH LF LR R ++LA E+HR A + Sbjct: 308 SAISYLEKANLFVSPLDDTRTWYKYHHLFAEALRNRLNETYDLATR-SELHRNAHRWFGE 366 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 +G EAI HALAA D + H + E + L L +P S++ L Sbjct: 367 RGLYREAIKHALAAEDFDSAGQYMERHLPEMIGSGEEADLLRWLNEMPLRSIVRFTNLFF 426 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 Q + ++ R + L + A+ D P+ ER Sbjct: 427 FQESVQAAKGRAADARRYLDQV----------------------TALLDTEPELIER--- 461 Query: 474 LALEELPPGWFYSRIVATSVL---GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 E + + R+ S+ G++ G+L +L L+ V H ++ + Sbjct: 462 ---ERIKEMQVHIRMYGNSLSYYEGDIDGFIGQLKSNLDLL-----------VRHGSIAN 507 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP--MHEFL----VRIRAQLLWAWA 584 ++ E L +G + ++ A+ N E+L +H L V + A LL+ Sbjct: 508 VVNMGEALLYRGPVGFGGRLRKIAYLSSNVSADEKLSLVLHRSLEGLGVILLADLLYELN 567 Query: 585 RLDEAEASARSGIEVLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK 643 R+ E+ + + + P +L + A G +D AR+ + R Sbjct: 568 RIKESRLTLEKALYGGAFPRNPAALAPGYILLSKILQAEGQMDQARNVILRA-------- 619 Query: 644 YHSDWISNANKVRVIYWQMTGDKAAA------------ANWL--RHTAKPEFANNHFLQG 689 I + R WQM + A A W+ RH E A+ + Sbjct: 620 -----IEEMRECRSPRWQMIVEARLARLQLATGETEAAAAWINARHIRIVERAD---VSR 671 Query: 690 QWRNIARAQILL--GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 747 ++ N A++L+ GE A L ++ A+ ++ LLL + G DA Sbjct: 672 EYENFTLARVLMSQGELRKALGWLSRISLEAKQADRIASRIEALLLQAICNKELGDYGDA 731 Query: 748 QRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE-INQHH 806 L A +LA GFI F+ EG+A+ + + +L E E +LRE I++ Sbjct: 732 VGALAQACELARPEGFIRIFMDEGQALTPLFERWLSEASLDE-EMAAYANLLRERISEGG 790 Query: 807 -RHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAAT 865 +A +N T LT RE +VL I G SNE+I G+L ++ Sbjct: 791 WTASYARMKDNL---------------TVKLTGREREVLRKIGEGLSNEEIGGQLFLSTG 835 Query: 866 TIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 T+K + N+Y+KL V +R A+ A+++ Sbjct: 836 TVKKYAYNIYEKLQVKNRVQAISRAKEM 863 >UniRef50_C0Z6I1 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6I1_BREBN Length = 856 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 145/469 (30%), Positives = 218/469 (46%), Gaps = 7/469 (1%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA--AGKNDI 59 LI +KL P ++R ++ ++ A R+ L+ +PAG+GKTT +SQW +GK Sbjct: 9 LIATKLHVPKYGSDLLLRHQIWKEIDDAGAARVILVCAPAGFGKTTAVSQWTQNSGK-PT 67 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 GW SLDE DN RF Y A+ A G ++ + AS L + L E+A + Sbjct: 68 GWISLDESDNDPVRFWRYFARAIDMAQEGVGKESSSVLHPQYTASAEQLMSVLLEEIAGF 127 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 YLV+DDYHLI P IHE ++ I+H + +V+++R P + LRVR QL ++ Sbjct: 128 ERDFYLVLDDYHLIKEPSIHEGLQTLIQHASFYMHVVLITREEPPFALHRLRVRKQLKQL 187 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 GS L F +E ++ F +L + + GW LQL ALS Q A K Sbjct: 188 GSDTLRFNEEECRRLFCEQLGMSLSEQAIGLLSKRTEGWVAGLQLAALSM-QGKPEASKV 246 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 +G N ++ +YL +EVL + + FLLK++IL + L VTGE + L Sbjct: 247 IHHFSG-NDKYVGEYLTEEVLKRLPEKVQMFLLKTSILPRLTGDLCAAVTGEPDAHDILR 305 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 +ER F+ +D EW+ YH LF L + LP +H +A+ + + G+ E Sbjct: 306 MLERTNSFVIALDGVNEWYRYHHLFAELLLSHVRKTYNELLPALHISASCWFESHGWIME 365 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A HA D +++ HA + E L ++ L NP+L + AWL Sbjct: 366 ATEHAFLGKDWNRASRLIVAHAPWMLKQYENITLRRWMRYFDSSWLESNPELCIAFAWLH 425 Query: 420 QSQHRYGEVNTLLARAEH--EIKDIREDTMHAEFNALRAQVAINDGNPD 466 + + LL A+ I D E LR + + GN D Sbjct: 426 AVSNEIDQAEILLQLADEATRINHGSYDDCRVEMCVLRGYIEVMRGNVD 474 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 27/247 (10%) Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF---ANNHFLQGQWRNIARAQILLGEF 704 W+S RV W + W+ AK A+ H + +AR + L Sbjct: 620 WMSFVETFRVRLWIEENRREEIEKWVEPYAKMNVDIVASRHEFERM--TLARVYLYLKND 677 Query: 705 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 764 A ++L L A + LLL+Q Y ++ +A + A+ LA G++ Sbjct: 678 SAAIMLLTSLKHEAEIKDRLGSRIEAFLLLSQAYMIQKQQHEAMECMRMAVTLAAPEGYV 737 Query: 765 SHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 F+ EG +A+ L L + + + E +L+ + + Sbjct: 738 RTFLDEGSGVAKMLYSLYKSKNVSKQEMAYLSMLLKSVEK------------------EF 779 Query: 825 PEVPELIRTSP----LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 P + IR SP LT+RE +VL LI G SN IA +L + T+K H+ ++ KL V Sbjct: 780 PTLDIQIRVSPALEKLTERESEVLALIGEGLSNSDIADKLHLTLGTVKGHVHQIFSKLQV 839 Query: 881 AHRQDAV 887 +R A+ Sbjct: 840 KNRAQAI 846 >UniRef50_Q2JAS8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Frankineae RepID=Q2JAS8_FRASC Length = 914 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 158/447 (35%), Positives = 222/447 (49%), Gaps = 31/447 (6%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGK 56 + + +K P V R+RLL L RLALI +PAG+GKTTL QW A Sbjct: 9 LAVSTKFQAPTYDTQLVGRDRLLDVLRDGRARRLALIHAPAGFGKTTLAVQWQRVLRAEG 68 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQ--QATNGH--CAICETMAQKRQYASLTSLFAQL 112 + W SLD DN F S+LI AV+ + T G + E + Q LT L QL Sbjct: 69 VPVAWLSLDRDDNDAVWFLSHLIEAVRRVEPTLGGDLVEVLEGHSDDAQRYVLTELVNQL 128 Query: 113 FIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNL-PQLGIANLR 171 AE PL +V+DD+HLI P ++ F + P NL L+V SR P +G L+ Sbjct: 129 ----AEHRRPLAIVLDDWHLIDAPQAVAALEFLLEAGPANLHLIVTSRTRSPAVG--RLK 182 Query: 172 VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ 231 VR+Q+ EI + QL F H+E+ F +++ + R+ GW ALQL LS R Sbjct: 183 VRNQVTEIDATQLRFDHRESAAFLLELNELDLDSTDVHRLWSSTDGWVAALQLATLSLRD 242 Query: 232 NTHSAHKSARRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT 289 SA SA + G + H L DYL + V D + FLL +++ + L V+ Sbjct: 243 ---SADPSAL-IRGFSGRHHSLGDYLAENVFDALPADLLDFLLTTSVCDRLCGDLAAAVS 298 Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAE 349 G+ GQ LEE+ER+ LFL+ +DD EWF YH LF +LR+R + + A + +HR A+ Sbjct: 299 GQRRGQALLEELERRDLFLRPLDDNREWFRYHHLFVGYLRRRLERDHADRVVTLHRTASA 358 Query: 350 SWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 + G EA+ HALAAG+ D++ A L HS +++L + LP L Sbjct: 359 WFADHGLLGEAVTHALAAGNDAGAVDLVERQAMHLVEHSRMAVLLSLVNKLPSALLPGRS 418 Query: 410 QLVLLQAWLMQSQHRYGEVNTLLARAE 436 +L + AW N LL RA+ Sbjct: 419 RLQIAIAW----------ANCLLQRAQ 435 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 81/372 (21%), Positives = 148/372 (39%), Gaps = 66/372 (17%) Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF--LVRI---RAQLLWAWARLDE- 588 + + +G + A E+ +L E + L + + L RI R ++ W LDE Sbjct: 590 GRLYYERGDIDAAERLLEECHELGAESGVADLMIATYSTLARIKTLRGEIEDVWHLLDEG 649 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 +EA+++ + LS+ ++L+ LARGDL A++ L R + + G Sbjct: 650 SEAASQLVLPRLSAAVDHERLRL-------HLARGDLGRAQNVLARQSDDVARG------ 696 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 GD A A H+ Q AR +++ A Sbjct: 697 ---------------GDGIA------------MATRHY---QLAMRARVMAAQADYDGAL 726 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 +L ++++ + S+ + L ++ G A R L+ A+ R G + Sbjct: 727 RLLSQMHQESSSVAWRYAETATRIDLAVVHSLTGDTDTALRTLVPAVVAGARCGLVRTVT 786 Query: 769 IEGEAMAQQLRQLIQLNT-------LPELEQHRAQRILREINQHHRHKFAHFD-ENFVER 820 G + + + +L + LP + ++L AH D E Sbjct: 787 DAGPELLKIIGELRDASRCRRWPVELPTVPSDYLSKLL---------ATAHADAERAAIP 837 Query: 821 LLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 +++ P PL RE +L L+ G SN++IA L + T+K +++++Y KLGV Sbjct: 838 IIDRPAERNPAPEEPLNAREIDILRLLDRGLSNKEIARNLGLTINTVKWYLKSIYTKLGV 897 Query: 881 AHRQDAVQHAQQ 892 A R ++V A++ Sbjct: 898 ARRGESVSEARR 909 >UniRef50_B8G442 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=3 Tax=Chloroflexus RepID=B8G442_CHLAD Length = 917 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 254/951 (26%), Positives = 403/951 (42%), Gaps = 100/951 (10%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA--AGK--N 57 L+ +KL P + R RL L A + R+ LIT+PAGYGKT+L++ W +GK + Sbjct: 4 LVRTKLQPPEARPSLLARPRLYEWLRHALHSRVVLITAPAGYGKTSLLAVWIGESGKEWS 63 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 I W +LD DN R +YL+ A+ + A + + + A+L +L Sbjct: 64 QIAWLTLDAADNDLRRLFAYLLEALPHLSPTRRAQLQALLETEAGLDAEQWCAELLNDLV 123 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 E +V DDYH IT+ IH ++ F + H P L++ +R+ P L +A R R QL Sbjct: 124 EIGDATIMVFDDYHTITDNQIHHAIAFLVEHLPPRCRLIIATRSDPPLPLARWRARGQLA 183 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+ S LAFT +EA F + P+E + + + GW L L AL+ R + H Sbjct: 184 ELRSFDLAFTPEEAAAFLLEEMELPLEREQIVALLESTEGWPAGLHLAALALRHHPHQDK 243 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG------- 290 ++G ++ DYL+++V + + FLL+++IL + L V G Sbjct: 244 LVNAIISG--NRYVVDYLIEDVFNQQPFHIQQFLLQTSILDRLCGPLCDAVIGINEREIN 301 Query: 291 ----EENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHR 345 Q L E+ER LFL +D W+ YH LF + LR+R + + + + +HR Sbjct: 302 EQSHSSYSQSILTELERNNLFLFPLDTERNWYRYHHLFADVLRERLETGSSPDRIALLHR 361 Query: 346 AAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSL 405 A + A G AI+HAL A + ++ ++ + + L L +P + Sbjct: 362 RAGAWFAAHGMLPLAINHALRAQAFDDVVAMIEPIGLAVVSQVGEATLRRWLPQIPDTAF 421 Query: 406 LENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDT---------MHAEFNALRA 456 ++P+L LL+AWL + ++ + +A AE + + T + E +A+R Sbjct: 422 EQHPRLALLRAWLATTDYQMEDAAYWIAVAERALAGVASGTATSFGPIANLRGELSAVRV 481 Query: 457 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL-------- 508 ++A+ G+ D + + AL L R+ LG +G+L R+ Sbjct: 482 RLAVLRGDNDRVLQEGQQALAWLQTDNQALRMRVAKDLGYAYFAQGDLMRAEQAFSEAIV 541 Query: 509 ----ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET--------QEKAFQ 556 A + MA D + AL I + +QT ET +++A Sbjct: 542 NGFNAGLPYISAMATSDDAYTKALRGSIGAA--------IQTCRETINHMLRRNRDRASP 593 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 616 I L +H +R + A L EAE+S + G +SY L L + Sbjct: 594 GIGLPFLTLADLHG----VRHEFAGALPALAEAESSIKPGNT--TSY-----LCLLIVTA 642 Query: 617 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWI-SNANKVRVIYWQMTGDKAAAANWLRH 675 + + ARGD+ A + + L K DW+ + N GD A L Sbjct: 643 RINRARGDVAGALRVVRQARFLARQRKI--DWVLAVLNGFEAQLALEQGDLVTAEYLLEA 700 Query: 676 TAKPE-----------FANNHFLQGQ--WRNIARAQILLGEFEPAEIVLEELNENARSLR 722 P +A H ++ Q WR +ARA+ E + Sbjct: 701 QLHPPVEFRMMPIAAFYAREHIIRAQYEWR-LARARAAGDSAELHALAAALAAPTQGETW 759 Query: 723 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLI 782 M LL AG DA +++ AL LA ++ FV GE + L +L Sbjct: 760 QMLAPLDAALLRALALLAAG--EDATDLIVTALDLATVERIVTPFVQAGEPLRIVLNRLS 817 Query: 783 QLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQ 842 LP ++ +L I+ DE + P L PL+QRE + Sbjct: 818 VRQRLPAYGEY----LLSLIDN---------DEPLPMSMPVTSAPPTL--PEPLSQREIE 862 Query: 843 VLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 VL L+ G SN +IA L +A +T+K+HI N++ KLGVA R AV ++L Sbjct: 863 VLRLMAEGRSNHEIATSLVIAVSTVKSHINNIFNKLGVASRTQAVARGRRL 913 >UniRef50_Q1D1L7 Transcriptional regulator, LuxR family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D1L7_MYXXD Length = 902 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 249/937 (26%), Positives = 411/937 (43%), Gaps = 92/937 (9%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW---AAGKND 58 L+P+KLS P V L ++ + +L L+T+P G GKTTL++QW A + Sbjct: 12 LLPTKLSPPRAASVLVPCGAALRRIDHGVSGKLVLVTAPLGSGKTTLLTQWYREARVPHL 71 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 + W SLDE DN ERF +YL+ A+++A A + + L SL++ Sbjct: 72 LAWLSLDEQDNAPERFFAYLVGAIRRAAPDFDAYSTSQPEHATAVILQSLWS-------- 123 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 L +V+DD+H++ + + + + H P ++ VV SRN+P+L +A L++ +QL+ Sbjct: 124 LGRELVVVLDDFHVLRERPLVRAFSYLLDHSPPHVHWVVSSRNIPELDLAKLKLTEQLVT 183 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAES-SRICDDVSGWATALQLIALSARQNTHSAH 237 + + L EA + RL + E + GW ++L LSA H++ Sbjct: 184 LDGRDLNLD-GEAIRELGLRLCGAVLTPEDIDSLRTRTEGWVAGVKLALLSA--GEHASV 240 Query: 238 KSARRLAGINASH-LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 A R A I ++H ++ YL D VL R FL+ S+++ ++ AL + G G Sbjct: 241 SDALRKA-IGSNHDVARYLADAVLREQPEEVREFLVLSSVVEQLHGALCNALLGITRGHT 299 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG- 355 L ++ER LF+Q +D +W+ YHPLF + LR + + A +P +HRAA+ +W A+ Sbjct: 300 LLGQLERSQLFIQALDTERQWYRYHPLFLDVLRAQLACDYADRIPRLHRAAS-AWFAENQ 358 Query: 356 FPSEAIHHALAAGD-----ALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ 410 P EA+ HA A+ D AL R + AW EL+ + L ++ +P Sbjct: 359 MPDEALTHAFASEDRDWCLALTARCM---EAW--MREGELASVLHWTAKLTAQEVIRSPA 413 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVA--------IND 462 + + + R+ L A+H + D ++ E L ++A ++D Sbjct: 414 ICVGHIACLILSRRFAHATAALRDAQHHL-DTADEVSAPERERLTKRLAHLTLLHAVLSD 472 Query: 463 GNPDEAERLAKLALEELPPGWFYSRI-VATSVLGEVLHCKGELTRSLALMQQTEQMARQH 521 PD L + PG S + +A +VL + + R A M++ AR+ Sbjct: 473 SAPDTGMDL------DASPGSEESDVFIAGAVLAAKAYRALRMNRFDA-MRRLALSARET 525 Query: 522 DVWHYALWSLIQQSEILF-----AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 576 H + L+ +++L AQG ++ A E+AF+ + + P+ Sbjct: 526 LQGHNNPF-LVGYTDVLVALADRAQGNMKDAAARCEEAFERASRG--RRNPVWANAATAL 582 Query: 577 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA----MLIQCSLARGDLDNARSQL 632 A + RLDEAEA +EVL + A ML + RG A L Sbjct: 583 ANARYEQNRLDEAEALC---VEVLPLLPQASVFETFALAYLMLARIKTVRGKYAEAYRLL 639 Query: 633 NRLENLLGNGKYHSDWISN--ANKVRVIYWQMTGDK----AAAANWLRHTAKPEFANNHF 686 + L +L G + + ++++ K+R+ + + A + E++ F Sbjct: 640 DYLHGVLECG-HQTRFLAHVCGEKIRLYLVEQAPARMRVVAQEFGLGERMRRGEWSEKRF 698 Query: 687 LQGQWRNIARAQ--ILL--GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 742 W + AQ +L+ G + A +LE L +A + +S L + +W+AG Sbjct: 699 YDETWERLGLAQAWVLMARGRHDKAHAILEVLRASAHEVGYVSRETALLATIAVCHWRAG 758 Query: 743 RKSDAQRVLLDALKLANRTGFISHFVIEG----EAMAQQLRQLIQLNTLPELEQHRAQRI 798 A L LA R GF E E + RQ P+ R Q + Sbjct: 759 DAMAAFAALNRGFALAQRFGFGRSVFDETPGLQEVVIAAARQRKLSYAFPDRYATRYQDL 818 Query: 799 LREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAG 858 L + R +FA P P PLT+RE Q+L L+ G SN++I+ Sbjct: 819 LSAGTRVPR-EFA-----------APPSAP----LEPLTERELQMLKLLAQGLSNQEISE 862 Query: 859 ELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 VA +T K H+RN++ KL V R A+ AQ+ L+ Sbjct: 863 RSNVALSTTKWHLRNVFAKLDVTTRTAAIVKAQERLQ 899 >UniRef50_Q46V70 Regulatory protein, LuxR:Tetratricopeptide TPR_4 n=3 Tax=Cupriavidus RepID=Q46V70_RALEJ Length = 947 Score = 208 bits (530), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 252/949 (26%), Positives = 393/949 (41%), Gaps = 106/949 (11%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-----AAGKNDI 59 +KL P+ + V R + + A RL L+ +PAG+GKTT + Q AAG + Sbjct: 42 AKLRPPLLTPYQVERSAICDTICAAGFVRLVLVRAPAGFGKTTTMLQCRARLEAAGVPTV 101 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQY----ASLTSLFAQLFIE 115 W +LD DN RF L A+ G A KR A L Sbjct: 102 -WLTLDRADNDATRFLGSLEVALSPVLEG--------APKRPSDHAGADAGEQALALMDR 152 Query: 116 LAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQ 175 +A H L +DD+ + NP + + + P VV +R +P+ G+ LR R + Sbjct: 153 VARHHGAFTLFLDDFEALQNPAVVGLVWQLVESLPPGARAVVGTRWVPETGLGRLRARGE 212 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 LLEI QL F+ E + F +E A S + GW TAL L ++S + Sbjct: 213 LLEIEPAQLRFSASETESFLRHARGLKLEQAAISALHRRTEGWPTALWLASVSMERRAQP 272 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRV------- 288 A +G NA+ ++DYLV++V ++ R FLL+++IL + L + Sbjct: 273 ETFIAG-FSGSNAA-IADYLVEDVFHHLPEPVRDFLLRTSILDQLCGPLCDALYQWGPQP 330 Query: 289 -------TGEENGQMRLEEIERQGLFLQRMDD-------TGE----WFCYHPLFGNFLRQ 330 N L +ER LFL ++ TGE W+ YH LF +FLR Sbjct: 331 PAVADADAPAGNSADILAWLERANLFLLPLESERYGERGTGEQSQQWYRYHSLFSSFLRG 390 Query: 331 RCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSEL 390 + + + E+H AA+ + QG P AI HA+AAG +L A L + Sbjct: 391 QLTQTMPQAVAELHMAASRWYEGQGRPVPAIEHAIAAGALDHALQLLDGSAGGLLAQGRM 450 Query: 391 SLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE 450 LL L+ +P L P+L + +AW + E LL + E D + + A Sbjct: 451 RLLTRWLEMVPPAELARWPKLQIARAWAVSFTRGPAEAIALLQASSTE--DATGELL-AH 507 Query: 451 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLAL 510 ALR + DEA A+ L LP G+ + + + + + G+ + L Sbjct: 508 VRALRHMLLNMMDRFDEARAFARNELPPLPMGYAFPDAILATSMARLAAVSGDYVEARRL 567 Query: 511 MQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 570 + Q R D ++S + I QG LQ A A + + + Sbjct: 568 LAVARQAVRGSDSNFNKIFSESVEGLIDLRQGRLQQALGRFRIAARTMLPNRFGPTNGNA 627 Query: 571 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA--------MLIQCSLAR 622 + A+ L+ E S RSG +L+ Y P + LA +L + + R Sbjct: 628 MACILLAEGLY------ETGDSDRSG-RLLNVYLPLSRDLGLADQIITGHLVLARIAFER 680 Query: 623 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF- 681 G++D A L LE+ LG+ + + + +A R G++ AA L+ P Sbjct: 681 GEVDQAHEWLAALEH-LGHHRGLTRLVMSAMLERARLALRQGNRHAAEEALQRAGDPALW 739 Query: 682 ---ANNHFLQGQWRNIARAQILLG-EFEPAEIVLEELNEN---ARSLRLMSDLNRNLLLL 734 +I ++ L EP V E + A S +LM + +LL Sbjct: 740 RTRPGVSSFASDVEDITVGRLRLALHVEPTAQVREAVERELAAAVSNQLMRRALKLRILL 799 Query: 735 NQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR 794 Q Y + G + A V+ +AL+ GF+ F EG+ ++R+L+ Sbjct: 800 AQAYQRTGDGAQALVVMAEALRFGAAEGFVRIFADEGD----EVRRLV------------ 843 Query: 795 AQRILREINQHHRHKFAHFDENFVERLLN----HPEVPELIRTS------PLTQREWQVL 844 AQ R+ + +VERLL P+V + + PLT +E +VL Sbjct: 844 AQACARQ--------GGNLPSAYVERLLGACGQGPDVAPSGQAAPAPLVEPLTPKEQKVL 895 Query: 845 GLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 L+ G+SN +A L V+ TT++TH+RN+ KL ++R AV A+QL Sbjct: 896 QLLAEGFSNVAMAQRLFVSETTVRTHLRNISAKLHASNRTQAVAIARQL 944 >UniRef50_C1DE28 Transcriptional regulatory protein AcoK, LuxR family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DE28_AZOVD Length = 900 Score = 202 bits (513), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 153/492 (31%), Positives = 231/492 (46%), Gaps = 21/492 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND--- 58 LI +K P +VR RL+A+L LAL+ + AG+GKTTL++QW + Sbjct: 23 LIATKFVPPRSPGLLLVRPRLMARLEPLAERSLALVCAGAGFGKTTLLAQWRGQLQEHGQ 82 Query: 59 -IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLDEGD+ E F YL+ A+ G +A S+ +F L + Sbjct: 83 AVAWLSLDEGDDVPEYFCHYLLDALLPLHPGLGWRLGFLAAG--LPSIDLVFGHLINAVQ 140 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 +PLYL++DDYH I NP IH + + + H P N +++ SR+LP L ++ LR R+QL+ Sbjct: 141 AVEAPLYLIVDDYHAIRNPAIHRAFAYLLEHAPANFHVLLGSRSLPTLPLSRLRSRNQLI 200 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSA--RQNTHS 235 E+ + L F EA+ +F + + A++ R+ + GW T +Q+ LS + N Sbjct: 201 EVDTNDLRFNLCEARHYFADSAALTLSNAQTQRLLELTEGWITGMQMATLSPSIKDNPAQ 260 Query: 236 AHKS---ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEE 292 A S RL G YL D V + + A FL++++IL L VTG Sbjct: 261 AIDSLSHGGRLVG-------RYLEDVVFEPLPAAVDDFLMRTSILDRFCAELCDAVTGRH 313 Query: 293 NGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWM 352 +G L+ IER LF+ +DD G+WF YH LF L+ R + ++ +H A + Sbjct: 314 DGHAMLDWIERHNLFVAALDDHGQWFRYHHLFAETLQARLRRRTDLDIAALHERAGNWFA 373 Query: 353 AQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 Q +EA HALAAG A SL ++ L L+ LP + L Sbjct: 374 GQSLWAEATRHALAAGKVESAPGRAGLGAQSLAERGDIDTLLGWLQQLPITADEHRISLQ 433 Query: 413 LLQAWLMQSQHRYGEVNTLLA--RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER 470 L AW + + R+ E LL R + R D + + +A+ A N Sbjct: 434 LNLAWALAHRFRFDESRRLLGELRRWFAVHPARRD-LRVKLDAVAAICEAFAENVQTGIA 492 Query: 471 LAKLALEELPPG 482 LA+ L ++P G Sbjct: 493 LAEPLLAQIPCG 504 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 40/58 (68%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 L++RE Q L L+ +G SN++IA L+++ T+K H++NLY KL V R A+ A++L Sbjct: 839 LSERESQTLRLVAAGQSNKEIARTLDISVETVKWHLKNLYGKLQVTSRTRAMSRAREL 896 >UniRef50_A9B6R2 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B6R2_HERA2 Length = 870 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 194/655 (29%), Positives = 307/655 (46%), Gaps = 32/655 (4%) Query: 1 MLIP---SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-K 56 M++P +K PV + VVR +LL +L ++ RL ++++PAG+GKT L+SQW A K Sbjct: 1 MVMPILTTKCYIPVPRLNGVVRSQLLERLKERHDRRLTVVSAPAGFGKTMLVSQWIANCK 60 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQ--QATNGHCAICETMAQKRQYASLTSLFAQLFI 114 + W +LD+ DN RF YL+AA+Q + T G I Q+ Q L S LF+ Sbjct: 61 QPVAWLTLDQNDNDLARFLVYLVAALQTIEPTFGLEII-----QRLQAPELPSTETILFL 115 Query: 115 ---ELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR 171 +LA LV+DDYH +T I E+MR + P L +VV++R P L +A LR Sbjct: 116 LLNQLATIEQQSILVLDDYHWLTAKPIAEAMRLLLERLPPQLQIVVITREEPDLPLARLR 175 Query: 172 VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ 231 R QL E+ L FT EA QF + + A+ S + D GW T LQL A+S Sbjct: 176 ARHQLTELRVADLRFTVAEAHQFLSQTMELDLLASASQALTDQTEGWITGLQLAAIS--- 232 Query: 232 NTHSAHKSARRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRV- 288 S+ + G +H + DYL++EVL + FLL +++L M +L V Sbjct: 233 -MQGQQASSPLIDGFTGNHRFVLDYLLEEVLQQQPAEIQTFLLVTSLLDRMCGSLCEAVL 291 Query: 289 -TGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQW-ELAAELPEIHRA 346 +G L +ER LF+ +D W+ YH LF + LRQR L +LPE+HR Sbjct: 292 AAAPASGAATLAYLERANLFIVPLDHERHWYRYHHLFADLLRQRLAISSLGHDLPELHRR 351 Query: 347 AAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLL 406 A+ + A GF EA HA AA D + ++ SL ++ L + L +P Sbjct: 352 ASHWYEAHGFGIEAFRHAAAANDVAHIERLIDQQQISLHFRGTVTTLLDWLATVPKSVFE 411 Query: 407 ENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIRED----TMHAEFNALRAQVAIND 462 + P L A LM + V LA AE ++ +D + + A RA + + Sbjct: 412 QQPSLWWRHASLMLMLGQTSGVAEKLAAAEAALQSFPDDHQTRNLIGQIAASRAILLLAQ 471 Query: 463 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 522 ++ ALE L +S A LG G+ + + ++ +A+ Sbjct: 472 YQFASTLAQSQRALEYLAADNVFSLTSAYWTLGFGYLAHGDRAAARQALTKSVSLAQASG 531 Query: 523 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 582 + + I ++ ++ L A T ++ L EQ L+ ++E + + A++ + Sbjct: 532 SSFIRILATIGLGQLQESENQLYQAAATYQQILALAGEQPLQ--IIYEAYLGL-ARIYYQ 588 Query: 583 WARLDEAEASARSGIEVLSSYQ--PQQQLQCLAMLIQCSLARGDLDNARSQLNRL 635 W +LD AE A+ +++ Y + + C L++ LAR + A ++L +L Sbjct: 589 WNQLDAAERYAQQSLDLAQQYDRLIDRSIICEIWLVRLQLARRANEQAATKLGQL 643 >UniRef50_A3TJL4 Regulatory protein, LuxR n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TJL4_9MICO Length = 844 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 203/732 (27%), Positives = 320/732 (43%), Gaps = 38/732 (5%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-- 58 +++ +K+ RPV V R RL L + RL L+ +PAG+GKTTL++QW Sbjct: 2 VVLGTKIHRPVPRRDLVHRPRLTDLLGRPQHPRLVLVAAPAGFGKTTLLTQWLGSTTTGT 61 Query: 59 -IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYA---SLTSLFAQLFI 114 + W SLDEGDN RF +L+AA+ G + +A +LT L + Sbjct: 62 AVAWLSLDEGDNDPRRFLEHLLAAIS-VIGGFTEATDLLASANHGPPGHALTDLVLTSIV 120 Query: 115 ELAEWH-SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 + H + + +DDYH+IT+P + S+ F + H P + TL + +R P L + LR R Sbjct: 121 NDLDTHPADTVIALDDYHVITDPDVQRSVAFLLEHVPRHATLAIATRADPNLPLPRLRAR 180 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 +L+EI + +L FT EA F + + +++ + GW LQL LS R + Sbjct: 181 RELVEIRAAELRFTPDEATAFLADAMQLDLTDDQATALATRTEGWPAGLQLAGLSLRGTS 240 Query: 234 HSAHKSARRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE 291 + R +A +H + DYLV+EVL + A R FLL +++L + L VTG Sbjct: 241 ----DTVRFVADFAGTHRFVLDYLVEEVLGHQPEAVRRFLLDTSVLDELTGDLCDAVTGR 296 Query: 292 ENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW 351 ++ LE +ER LF+ +DD +W+ YH LF + LR R + A +P +HR+A++ + Sbjct: 297 DDSAAVLESLERDNLFVVPLDDQRQWYRYHHLFADALRARLAAQDPARVPALHRSASDWY 356 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 A+ +A+ HALA D ++ + LL + ALP + + ++ L Sbjct: 357 AARSRSEDAVRHALAGNDPGHAAYLVEQALPDVRRERRDVLLRQWSAALPDNVIRDSALL 416 Query: 412 VLLQAWLMQSQHRYGEVNTLLARAEH----------------EIKDIREDTMHAEFNALR 455 + +AW V L AE ++++R T+ A R Sbjct: 417 SICRAWTRLIAGDPDGVEAWLEDAERAMVTHPPTPEPGASVATLEELR--TLPATIAIYR 474 Query: 456 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 515 A A G+ R A+ AL+ P +R A LG +G+L ++ Q Sbjct: 475 ASAAQARGDAAATTRHARTALDLTGPEDHMARGGALGFLGLGAWARGDLAEAVTTFSQAL 534 Query: 516 Q-MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 574 Q +A DV AL + + A+G A E+A + L L Sbjct: 535 QSLAAAGDV-SDALGGTVGLGSMWQARGRPDEARRLFERALDTAGQGRGAALATLGDLHV 593 Query: 575 IRAQLLWAWARLDEAEASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLN 633 A +L LD A + + S P+ + + A+ A G+LD A L+ Sbjct: 594 GLASVLVEQGELDAAAEHLTTATSLGESASLPENRFRWCAVSSDVHRAHGELDAAVDLLD 653 Query: 634 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 693 R E L G Y A + R+ Q D A A W R A E + L ++ Sbjct: 654 RAEELRLPGYYPDVRPIPAARARLHLEQGRLDDARA--WARDVAVAEVEHPGHLD-EYAQ 710 Query: 694 IARAQILLGEFE 705 + ++LL E E Sbjct: 711 LTLVRLLLAEHE 722 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 37/58 (63%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 L+ RE VL L+ + S +IA EL V+ T++TH ++++ KL V R+ AV+ Q+L Sbjct: 784 LSGRELDVLRLLATALSGPEIARELFVSVNTLRTHTKHIFTKLDVTTRRTAVERGQEL 841 >UniRef50_A7NKK5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Roseiflexus RepID=A7NKK5_ROSCS Length = 880 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 242/928 (26%), Positives = 383/928 (41%), Gaps = 94/928 (10%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKT--------TLISQWA 53 L+ +K++ P R + R RL+ +L + L+++P G+GKT L ++ A Sbjct: 5 LLRTKIALPARHHCFIPRPRLITQLHRLIDVPATLVSAPTGFGKTMAVQEALRALATRHA 64 Query: 54 AGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLF 113 A I W +LD DN +F Y+ A+ A Q A + SL A Sbjct: 65 AA---IAWLTLDVHDNDPVQFWRYVALALHTTLPACGATLIEALTGPQPAPVRSLLAATL 121 Query: 114 IELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 E+ L LV+DDYHLI IH+ + F I + P NL +V ++R P L + R R Sbjct: 122 NEITAQTQHLVLVLDDYHLIDLHAIHDDLTFLIEYAPPNLHIVFITRADPPLPLHRWRAR 181 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 QLLE+ + L F E + + + A E + GW AL + L+ R +T Sbjct: 182 GQLLEVRATDLRFDLTETTTLLNDVMRLGLSAEEIMTLLRQTEGWPAALSMAGLALRDDT 241 Query: 234 HSAHKSARRLAGINASH---LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG 290 A R +A + A H + +YL DEVL R LL+ A+L +L V Sbjct: 242 --APSPTRHIAQL-AQHNRFIIEYLTDEVLAQQPAEVRALLLRIAVLERFCGSLCDAVAE 298 Query: 291 EENGQMRLEEIERQGLF---LQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAA 347 LE + + F L + WF +H LFG+ LR + + ++ ++R A Sbjct: 299 TTGSAALLETLAQTHGFIVPLPSAPNDEPWFRFHRLFGDLLRGQARCTFPEDVDALYRRA 358 Query: 348 AESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALP--WDSL 405 A A G +A+ +A+A D ++ A +L +LLE L LP W Sbjct: 359 AAWHAAHGDVEQAVEYAIAGHDFAHAAQLIERSANTLVMEGRAALLERWLHLLPDAWRQT 418 Query: 406 LENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNP 465 + P+ + AW + + RY EV L +AE + + E +A RA +A G Sbjct: 419 M--PRAGVAVAWALILRGRYSEVAPYLDQAETTMLP-DAPALRGELHAARAVLAETQGRA 475 Query: 466 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 525 EA A+ AL+ P ++ VA + + L G++ ++A +Q + + + Sbjct: 476 AEALVHARQALDLAPADHLIAQAVAHTAIAGALRISGDIDAAIAAYEQAVPLCQAAWLRL 535 Query: 526 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 585 AL + QG L++A + A Q +P + + +L + Sbjct: 536 PALLGRAHLGLLYLTQGRLRSAEAALKPAL-----QSAIFIPAASPVFIAYSAILIERNQ 590 Query: 586 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL-------ARGDLDNARSQLNRLENL 638 L++A R +++ QQ A L QC L A+GDL A+ L+ Sbjct: 591 LEDAHQHLRHALDL------AQQSGHTAALAQCHLHLARLRRAQGDLAGAQVALDTAATF 644 Query: 639 LGNGKYHSDWISN---ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN-- 693 G W+ A +VR+ Q KA RH + + G R Sbjct: 645 TAQGV--PAWVEPLLIAERVRLYLDQGAITKA------RHALASRGTDIEAVAGAVREAL 696 Query: 694 -IARAQILLGEFEPAEI------VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 746 + RA++LL + A+ ++ ++ R R++ L L L +A + D Sbjct: 697 PLIRARLLLHQGRSADARAFLDNIIASAEQSGRQGRVIEALILRTLACAALNDEAAARDD 756 Query: 747 AQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHH 806 QR AL +A G++ F+ G +A R+L I + Sbjct: 757 LQR----ALAMAEPEGYVRIFLDAGARLA---------------------RLLHRIGSAY 791 Query: 807 RHKFAH-FDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAAT 865 + F + R+ N E PE PLT RE VL L+ G + QIA EL V+ Sbjct: 792 AGRLLEAFPSSVRARVANLTESPE-----PLTDRERDVLRLMARGLTYRQIASELVVSVN 846 Query: 866 TIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 T++ HI++LY KL V R A+ A +L Sbjct: 847 TVRYHIKSLYSKLQVNSRTLALARAHEL 874 >UniRef50_C0ZJP0 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJP0_BREBN Length = 858 Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 145/474 (30%), Positives = 232/474 (48%), Gaps = 18/474 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA--AGKNDI 59 ++ +K + P ++V R RLL K+ RL + +PAGYGKTTL+SQWA G + + Sbjct: 1 MLKTKTAMPAVRSNSVHRSRLLQKMDAGLQCRLTALYAPAGYGKTTLLSQWAHQYGGSTV 60 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFA---QLFIEL 116 W SLDE DN RF Y++ + ++ G + E M + S TS+F L EL Sbjct: 61 -WLSLDEMDNDLIRFWRYIVFTLSES--GFAELSERMEPAMKATSHTSIFTFIDSLLNEL 117 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 A PL +++DDYH+I++ IH S+ +F+ + P ++ L + SRN VR ++ Sbjct: 118 AATTQPLAIILDDYHVISDETIHNSLAYFLEYLPSHVHLYIASRNTLPFSTVKWNVRHEV 177 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 I + Q F++QE F+ P+ + ++ GW LQL A+S NT + Sbjct: 178 CHIEAGQFLFSYQETDSFYRQVHDLPLTETQIEQLVKSTEGWIAGLQLAAISLV-NTENH 236 Query: 237 HKSARRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 + AG SH +S+YL EV+ + R FLLK+++L M+ + +T Sbjct: 237 DQF---FAGFTGSHRNISEYLFHEVIMRLPEEERSFLLKTSVLARMDAHVCQALTSLPQC 293 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 Q L + RQ +FL +DD G W+ YH LF +FL + + E ++HR A+ES+ + Sbjct: 294 QQMLTRLHRQNIFLIPLDDYGTWYRYHHLFADFLLSQLEQTAPGEARKLHRLASESYAER 353 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G EAI HA+AA D + L H L E S +L ++P + +P L+ Sbjct: 354 GMMDEAIEHAIAAADYTLAASFLAQHIPVLLQRGEFSSFLRTLDSIPDHANHFSPLFRLI 413 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNA----LRAQVAINDGN 464 +L+ + L + E + + T H +F + +RA + G+ Sbjct: 414 YVFLLVACGFTDRAELALTQLEQSAASLEDSTEHQQFLSGLFFVRANLVFATGD 467 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 13/154 (8%) Query: 740 QAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRIL 799 Q G K +A L +AL + ++ F+ EG AM+ L QL +Q Sbjct: 709 QCGNKKEALAFLHEALLIGGNNCYVRSFLDEGTAMSHLLHD-YQLRLKKRSQQPGPSVPA 767 Query: 800 REINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGE 859 +NQ + F + +R + P + PLT +E +L ++ G SN+ IA E Sbjct: 768 AYVNQ----LLSLFPKKMEKR-----KAPLI---EPLTGKEMIILSMLAEGASNKMIADE 815 Query: 860 LEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 L T+K ++ +Y KLGV +R A+ AQ++ Sbjct: 816 LGNTLGTVKVYLHRIYGKLGVTNRTQALLKAQEI 849 >UniRef50_UPI0001910BD3 transcriptional regulator MalT n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001910BD3 Length = 101 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 93/101 (92%), Positives = 96/101 (95%) Query: 227 LSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALIT 286 LSARQN SAH SARRLAGINASHLSDYLVDEVLDNVD++TRHFLLKSAILRSMNDALI Sbjct: 1 LSARQNHTSAHHSARRLAGINASHLSDYLVDEVLDNVDVSTRHFLLKSAILRSMNDALIV 60 Query: 287 RVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNF 327 RVTGEENGQMRLEEIERQGLFLQRMDDTGEWF YHPLFG+F Sbjct: 61 RVTGEENGQMRLEEIERQGLFLQRMDDTGEWFSYHPLFGSF 101 >UniRef50_C8XKI9 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XKI9_NAKMY Length = 897 Score = 188 bits (478), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 152/484 (31%), Positives = 237/484 (48%), Gaps = 36/484 (7%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-----AAG 55 M++PS+ RP +D R RL+ ++ + RL L+++PAG+GKTTL+S W AAG Sbjct: 10 MVVPSR--RPALVD----RPRLIERVRRGSRSRLTLVSAPAGFGKTTLLSAWLAENGAAG 63 Query: 56 KNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFI- 114 + + W SLD GD F +YL A++ A+ E +Q + ++ L +L + Sbjct: 64 QRRVAWLSLDAGDRDPAVFWTYLATALR------SAVPEVGSQTLELTAVDPLPIELVVT 117 Query: 115 ----ELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANL 170 +LA ++LV+DDYHL+ I M + + P ++ LV+ +R P L +A Sbjct: 118 TLLNQLAAAEGEIWLVLDDYHLVDGSDIGTGMTRLLDNLPAHVHLVISTRADPDLALARW 177 Query: 171 RVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSAR 230 RVR +L+EI + L FT +EA + + + + + GW ALQL ALS + Sbjct: 178 RVRRELVEIRAADLRFTVEEATDYLTQVAGLDLAGSAVAALEQRTEGWIAALQLAALSLQ 237 Query: 231 QNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG 290 A R G + + DYLV+EVL + R FLL++A+L + L +TG Sbjct: 238 GRGDVA-AFIDRFTGTD-RFVVDYLVEEVLAHQPPDVRDFLLQTAVLDELTGPLCDALTG 295 Query: 291 EENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES 350 +G+ L +ER LFL +DD EWF YH LF + LR R E ++ +HR A+ Sbjct: 296 RRDGERTLVALERANLFLVPLDDRREWFRYHHLFADVLRARLLSERPDQVTRLHRQASNW 355 Query: 351 WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ 410 + Q P +AI HALA G+ D++ +L + + L + L ALP +++ P Sbjct: 356 FDQQDRPEDAIRHALAVGEVDRAADLIERALPALRRNRQDRQLRDWLTALPDETVRARPV 415 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARAEHEIK----------DIREDTMHAEFNALRAQVAI 460 L +L L+ + V L AE + ++R T+ A RA VA Sbjct: 416 LSVLVGHLLLASGDLAAVQARLDDAERALTTGTAGHGGSAELR--TLPATIAVFRASVAQ 473 Query: 461 NDGN 464 G+ Sbjct: 474 ARGD 477 >UniRef50_Q390G0 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=6 Tax=Burkholderia cepacia complex RepID=Q390G0_BURS3 Length = 922 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 161/570 (28%), Positives = 262/570 (45%), Gaps = 24/570 (4%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGK 56 +L+ +KL+ P V R +L+ + RL L+ +PAGYGKTT++++W A Sbjct: 20 VLVRTKLA-PASARGIVSRIARFGRLARGLDRRLTLVCAPAGYGKTTVLAEWRHALVATN 78 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W SLD+ D+ F+SY++AA+ AT G + + + R L +F +L EL Sbjct: 79 VKVAWVSLDQDDDNASIFSSYVVAAIVDATGGVGGRAQRLLRDRALIPLKIVFDELLNEL 138 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 L L++DDY + +PVIH++M +R+ P NL +V+ R+ P L ++ RD+L Sbjct: 139 EVAGVELVLMLDDYDRLASPVIHDAMFELLRYAPSNLHVVLSCRSAPALPLSYFESRDEL 198 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 + + L F E + FF+ P+ A R+ GW + LQL AL+ R + +A Sbjct: 199 VRVDEDDLRFDEAETRAFFERVAGKPLSAENVGRLRAATEGWVSGLQLAALALRDDNDAA 258 Query: 237 H---KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 + + AGI A YL + V+ V A RHFLL +A+L M AL +TG ++ Sbjct: 259 RVAEQVSHARAGIAA-----YLNENVMTQVPDAIRHFLLCTAVLDRMTPALCDALTGRDD 313 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPE----IHRAAAE 349 LE + LF++ +D + YH LF +LR+ ELA P+ +HR A+ Sbjct: 314 AVACLEWLSAHNLFIRSVDGGRRSYRYHALFLQYLRE----ELALRRPDAVAALHRRAST 369 Query: 350 SWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 + A+ +A+ HALAAGD + A L S++ + + + LP +L Sbjct: 370 WYAAERQWPDAVRHALAAGDFDAAAGWVEACAMKLIAASDVRTVLDWVSRLPEPALAGRL 429 Query: 410 QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDT---MHAEFNALRAQVAINDGNPD 466 +L + W + + + L E +I R T E +R+ +A Sbjct: 430 RLRIAHVWALALSMQMVDARRALEAIEADIDARRLGTDAITATELLGVRSLIAGLSDRSI 489 Query: 467 EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 526 E+ L + L PP + + + L G L +L L + E+ A H+ Sbjct: 490 ESLELGERVLAAGPPAGSWVEQIGQTTLIFGFGYAGRLDDALDLRARAERAASGHEPLFA 549 Query: 527 ALWSLIQQSEILFAQGFLQTAWETQEKAFQ 556 ++ F G L A +T E A + Sbjct: 550 HVYRQNMSGLAEFVAGRLHDASKTFETALR 579 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 17/156 (10%) Query: 740 QAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL--RQLIQLNTLPELEQHRAQR 797 QAG++ DA VL AL+ G + FV EG A+A++L R L + + P + Sbjct: 771 QAGQEDDALAVLAPALEYGQGNGLVRTFVDEG-AVAERLTARVLKRADRFPAV----GAW 825 Query: 798 ILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIA 857 LRE+ + +R N L+ RE ++L + G SN++IA Sbjct: 826 YLRELARAFE----------ADRASNAAPAARPGTAGNLSAREVEILDYVARGLSNKEIA 875 Query: 858 GELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 L VA TIK H++N+++KL V R AV+ L Sbjct: 876 RALRVAPETIKWHLKNIFEKLNVTSRIQAVRSGLAL 911 >UniRef50_C7RL93 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RL93_9PROT Length = 904 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 153/526 (29%), Positives = 242/526 (46%), Gaps = 29/526 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG- 60 ++ SKL RP + V R LL L + L L+++PAGYGKT+L+ W G++ Sbjct: 12 IVRSKLRRPRVVADFVARSELLRLLDAGSELPLTLLSAPAGYGKTSLLVHWLEGRDAAAA 71 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMA--QKRQYASLTSLFAQLFIELAE 118 W SLD D++ FASY +AA++ CA ET+A SL +L L L Sbjct: 72 WLSLDRDDSEPMIFASYFVAALRSVFPAACA--ETLACLNASPPPSLATLAGSLSNALEA 129 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 +PL LV+D Y + +P + + H L LV+ +R P+L + LRVR+ ++E Sbjct: 130 LPAPLVLVLDGYQHVDSPSTQALLDRLLAHPASGLRLVISTRQDPRLSLGALRVREAMVE 189 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I L F + + + + + + GW ++L AL+ R +A Sbjct: 190 IRVPDLQFDERASATLIERCAGRAVSGEDLLHLQACTEGWPVGVRLAALALRNGDDAAAG 249 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG---- 294 AR L+G + L Y V+E+L + T LL+++IL L V E Sbjct: 250 LARSLSG-ESPQLQQYFVEELLADQTAGTVDCLLRTSILDRFCAPLCDAVLWEGAALGET 308 Query: 295 ---QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQ----RCQWELAAELPEIHRAA 347 Q L + + +DD W+ Y LF FL++ RC A++ E+H A Sbjct: 309 LVSQALLRVVSSGAMLCTVIDDGRHWYRYRRLFREFLQRQLSLRCT---PADIAELHHRA 365 Query: 348 AESWMA-QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLL 406 A +W+A QG EAI HALA +L H L + L+ L+ LP D++ Sbjct: 366 A-AWLATQGLLEEAIPHALAGDGGAAAGQLLARHRNLLLGREQRWRLDRCLRLLPPDTVE 424 Query: 407 ENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDI-------REDTMHAEFNALRAQVA 459 +P+L++++AWLM Q R+ E++ ++ R E I + + ALR+ A Sbjct: 425 GDPELLVMKAWLMYHQGRHVEISAVVDRIEALIDSTVAGIQLPGSEALRGHLLALRSLHA 484 Query: 460 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT 505 +G A LA+ AL+ LP ++ + A ++L G+L Sbjct: 485 YLEGQAGSAVALAEQALQRLPVACVHAHVTAQALLAGGRQAAGDLA 530 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 39/58 (67%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 LT+RE ++L L+ SN +I+ EL ++ T+K H +N+Y+KL + R++AV A+ L Sbjct: 841 LTRRELKILKLLAVRLSNIEISEELCISRATVKRHTQNIYRKLRASSRREAVVRARTL 898 >UniRef50_C6D3K4 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3K4_PAESJ Length = 863 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 123/409 (30%), Positives = 210/409 (51%), Gaps = 19/409 (4%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDI 59 +L+ +K+ PV + ++RERLL L R+ + +PAG GK+TLI+QWA + + Sbjct: 7 ILLKTKIRLPVVKKNLIIRERLLDSLEQGMQGRMVTVCAPAGSGKSTLIAQWAQSARIQT 66 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYAS---LTSLFAQLFIEL 116 W SLDE DN RF Y++ A + G ++ ++++ S + ++ L EL Sbjct: 67 SWVSLDERDNDIARFWRYVLNAYME--TGPSSLADSLSAVGALVSGSTVNAIIDTLLNEL 124 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 A H P+ LV+DDYH I IH S+ +FI + P + +++ SR A R + Sbjct: 125 AATHDPIALVLDDYHHIEQAEIHNSLSYFIEYLPFHHRIIIASRGEISFDAAKWLARGER 184 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSP-IEAAESSRICDDVSGWATALQL--IALSARQNT 233 +IG QQL FT +E ++F CR + +E + ++ + GW LQL I+L A+Q+ Sbjct: 185 TDIGMQQLHFTQEETQEF--CRSAGIYLEQRHTRKLFEKTEGWIAGLQLASISLQAQQDI 242 Query: 234 HSAHKSARRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE 291 R +AG + S+ +S YL EVLD + FL ++++ M+ + + Sbjct: 243 D------RIIAGFDGSNEKVSSYLFQEVLDKLPSDVTDFLHQTSVFERMDAEVCNQAFYR 296 Query: 292 ENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW 351 + + LE++ LF+ +D+ WF YH LF FL+ R + + + + H AA++++ Sbjct: 297 SDSREMLEQLRTLNLFVIPLDNHNGWFRYHSLFAEFLKNRLRSRSSGQWLQYHHAASQAF 356 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKAL 400 A+G +AI HA+A + + L + EL+ L E ++A+ Sbjct: 357 AARGMLDKAIDHAIAGENYKEAAERLEEYIPDALKQGELASLLERIQAV 405 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 16/158 (10%) Query: 739 WQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRI 798 +Q G + +A +L +AL + G+I FV EG M ++L+Q+ T ++ Sbjct: 714 YQRGNRGEAMHILHEALVIGETNGYIRSFVDEGIPM----KRLLQMYT---------EQR 760 Query: 799 LREINQHHRHKFA-HFDENFVERL--LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQ 855 LRE +Q + + + + +E + L +P P+ PLT++E +L L+ G N+Q Sbjct: 761 LREADQDAWQRVSLDYVKGLLEYIPELENPSQPQPALIEPLTEQETFILRLLGQGAPNKQ 820 Query: 856 IAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 IA +L + T+K ++ +Y KLGV+ R A+ A+QL Sbjct: 821 IAAKLALKEGTVKVYLSRIYAKLGVSSRTQALAAARQL 858 >UniRef50_Q21ZR3 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=3 Tax=Burkholderiales RepID=Q21ZR3_RHOFD Length = 930 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 223/909 (24%), Positives = 388/909 (42%), Gaps = 56/909 (6%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG---- 60 +K + P + V R+ L + + +L L+++PAG+GKTT + Q A G Sbjct: 54 NKFNPPAPMAAQVQRQGLCEAICRSAG-QLVLVSAPAGFGKTTAMVQARARLEQTGVSTV 112 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LD DN RF L AV + G A + S+ A LA Sbjct: 113 WLTLDRADNDVSRFMICLGEAVTRLGLG---------GPDAAAGVDSVQA-----LARSD 158 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 P L +D++ + + +R H P L++ SR+LPQLG+A LRVR L EI Sbjct: 159 IPFALFLDEFETVHEAAVLGLVREIADHLPRGGHLIIGSRSLPQLGLARLRVRGLLTEID 218 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAES-SRICDDVSGWATALQLIALSARQNTHSAHKS 239 + +L F+ Q+A F+ R + + E R+ GWATAL L ++ A T Sbjct: 219 ADRLRFSLQDALTLFEQRRQPNVLSTEQLFRLHQKTEGWATALWLASI-ALDRTVDQSDF 277 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 R +G N + ++DYL ++VL R FLL++++LR ++ ++ + + LE Sbjct: 278 VDRFSGSNRA-VADYLAEDVLARQPTHIRRFLLRTSLLRQLDASVCAALNPRADCVALLE 336 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 +++ + LFL + + YH LF ++LR + + E ++ +H AA+ + ++ P Sbjct: 337 QLDAEHLFLSPVTGARRTWRYHSLFADYLRTQLEREHPDDVARLHLAASGWYESKDRPVP 396 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 AI HA+ GD +L +HA + + LL ++P +P+L ++ W Sbjct: 397 AIDHAIEGGDFPHAMSLLDSHADAFLEQGRMRLLSRWFASMPPSQRQAHPRLEMIAIWAA 456 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQ-VAINDGNPDEAERLAKLALEE 478 E +L R+ D + + A N +R +A+ D N +E+ + + AL + Sbjct: 457 CFTRGPWEAMEMLERSGASASD--DPYLRANANGIRPMLLAMQDRN-EESLEVGREALRQ 513 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 LP G ++ + + L G+ + L+ + ++ +++ + + Sbjct: 514 LPTGHQFADTTLLNAMAHNLAVMGDQREAQQLLDAARREQGGSSTFNR-MYTESTEGLLD 572 Query: 539 FAQGFLQTA---WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 QG L+ A + A I+ H + A ++ +LD+AE Sbjct: 573 LQQGRLRQATARFRLAVDATHAISHTHTHGNALAGVYY---ACAVYELNQLDQAEHLLNV 629 Query: 596 GIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 + + P + AM + + GD+D A + LE LGN + ++ A Sbjct: 630 YLPITRDIGLPDHMILAHAMRSRIAFINGDVDAASLAITELE-YLGNQRKLPRVVAAAKL 688 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG------QWRNIARA--QILLGEFEP 706 R Q+ G+ AAA + L P + Q Q+ +AR +I G+ Sbjct: 689 ERARMLQLQGNAAAAHDELMRADDPTLWSREQRQRMLAHDIQYMAMARLRWEIAFGDAGA 748 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 L+ + A L LL + G A + AL+ A + GF+ Sbjct: 749 CLGRLDAEKKRAAEAGRHRRLLVLRLLHALALQRTGDMPAAVTEIGTALQFACQEGFMRL 808 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 + EG A+ +++ L+ ++ +L + Q F Sbjct: 809 ILDEGPAVGALVQRYQSLHDSGQMRDP----LLGDYLQRLLQAFGPLPTEI-------EA 857 Query: 827 VPELIRT--SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 PEL+ PLT++E +VL L+ GYSN +A +L V+ +T++TH+RN+ K G R Sbjct: 858 TPELLGGVLEPLTRKEIRVLQLLVEGYSNSAMAEKLFVSDSTVRTHLRNINMKFGAHSRT 917 Query: 885 DAVQHAQQL 893 AV A++L Sbjct: 918 QAVAIARRL 926 >UniRef50_A5V4S7 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V4S7_SPHWW Length = 878 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 241/929 (25%), Positives = 373/929 (40%), Gaps = 126/929 (13%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND----IG 60 +K + PV T+ R RLLA S + RL L+T+ AG GKTT +SQW A + + Sbjct: 10 TKFTPPVNWGRTMARPRLLAMASAFEDKRLVLVTAAAGSGKTTFMSQWYAALGEQGRLVA 69 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLDE D R S L +++ A + E A + + F F+ Sbjct: 70 WLSLDERDRNPGRLLSLLAESLRLAADEAQLSGERFALN-GFELQSDDFIDSFVNAVSLL 128 Query: 121 SPLYLV-IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 V +DDY+L P +R +R P NL +V+ SR P LG+A LR + E+ Sbjct: 129 GQRTAVFVDDYYLAATPENDLVLREILRLAPPNLLIVLSSRAYPDLGLARLRAYSAMAEV 188 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 QL F EA F I + C GW LQL +LS + H Sbjct: 189 DFDQLRFDGDEATAFMRDVHGIDIGRSGGELFCTRTEGWIAGLQLASLSLK--GREGHVE 246 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 + ++DYL VLD R FL ++A+L + L VTG + Q +E Sbjct: 247 LLENFAGSRREVADYLSSFVLDEQSADVRDFLFRTALLDRFDCDLAGAVTGIADAQGMIE 306 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 +E LF+ +DD W+ YH LF +FLR R E +LP ++ AA G + Sbjct: 307 LVEAANLFIVPLDDQQRWYRYHHLFQDFLRGRAPRE-GIDLPAVYAAAVRHCEECGLGED 365 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ +ALA+ D D++ A +L ++ L L+++ + +P+L ++ W + Sbjct: 366 AVAYALASRDEAKAADLIAESAMALIYKGDIPRLASWLESVSESVMQSHPRLPTIRCWAL 425 Query: 420 --QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 Q GE A EI R D G+ E E L +A+ Sbjct: 426 FHAGQWEAGEA------ALGEIAQRRGDG----------------GDTAEIE-LLDVAMR 462 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 VA L ++L GEL +++ L + + S I Sbjct: 463 -----------VAADELEDILVRGGEL---------VDRLEDSAPFLAGTLANFVTMSRI 502 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI-RAQLLWAWARLDEAEASARSG 596 G +TAW +KA L+ P R RA L A + D A+A Sbjct: 503 --GIGDYETAWSFCDKAGTLLLRA---DCPYGYIFSRCTRAICLIAEGKADVADAELAKA 557 Query: 597 IEVLSSYQPQQQLQ---CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 ++ + C C+ RGDL AR QL ++ I Sbjct: 558 EQLANRTAGNISFAAALCRGWRGACAYERGDLLTARQQL----------EFAVPLIRRCG 607 Query: 654 KVRV-----IYWQMT----GDKAAAANWLRHTAKPEFANNHFLQGQWRNIA---RAQILL 701 + + +Y T GD+AAA + L A ++ G+ R R ++LL Sbjct: 608 NIEIQRRLAVYLSRTCAALGDRAAAHDVLDELAASRHGDS---AGKTRTTVAAERIRLLL 664 Query: 702 GEFEPAE--IVLEELN-----ENARSLRLMSD--LNRNLLLLNQLYWQAGRKSDAQRVLL 752 GE + + +V EL+ E A RL+ D ++R +++ + W G + A L Sbjct: 665 GEEDVRQLRLVWAELDRFAAREGALPDRLLFDVEISRLRMMIAEGRW--GEAAGATPRLA 722 Query: 753 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQR---ILREINQHHRHK 809 L+ + ++ EA Q RQ N L + +R + RE Sbjct: 723 AWLERRQNSARPRAELLLVEAQIQLGRQDAAANRLARQARVTGERFPMVFREA------- 775 Query: 810 FAHFDENFVERLLN--------HPEVPELIRTSP----LTQREWQVLGLIYSGYSNEQIA 857 + V+ LLN PE + ++ + L+ RE ++L L+ G+ N+ IA Sbjct: 776 -----PDPVQALLNGDWDGEGTGPETSDALQLAATEHGLSAREGEILSLVIEGHKNKWIA 830 Query: 858 GELEVAATTIKTHIRNLYQKLGVAHRQDA 886 L ++ T+K H+RN+ +KLG +R A Sbjct: 831 RRLGLSEHTVKWHVRNVLEKLGAPNRASA 859 >UniRef50_C1AXQ0 Putative serine/threonine protein kinase n=2 Tax=Corynebacterineae RepID=C1AXQ0_RHOOB Length = 1161 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 163/608 (26%), Positives = 272/608 (44%), Gaps = 39/608 (6%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKNDIGW 61 K P V R RL+ L + RL L+ +PAG+GK++L++QW + W Sbjct: 336 KFRPPTTTRRLVPRRRLITALRAGRDRRLTLVHAPAGFGKSSLVAQWRDDLVEAGTAVAW 395 Query: 62 YSLDEGDNQQERFASYLIAAVQ-----------QATNGHCAICETMAQKRQYASLTSLFA 110 ++D DN F S+L+ A++ QA H E LTSL Sbjct: 396 LTVDRDDNHLVWFLSHLVEAIRRVRPEVVGELGQALEEHGGTVERFV-------LTSLIN 448 Query: 111 QLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANL 170 +L + L +VIDD+H IT+ ++M F + + +L +VV SR+ L ++ + Sbjct: 449 RLH----DSGEALVVVIDDWHRITDAGPVDAMTFLLDNGCHHLKIVVASRSRAGLPLSRM 504 Query: 171 RVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSAR 230 RV D+L EI S +LAF E++ F R+ P++ + ++ D GW ALQL +LS R Sbjct: 505 RVLDELNEIDSGELAFDFDESQNFLSDRVRVPLDDTDVEQLRDSTDGWIAALQLASLSLR 564 Query: 231 QNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG 290 + + + AG +A + +YL + VLD ++ F+L +++ + L + + G Sbjct: 565 EAGSPENLIEQLRAGTDA--IGEYLAENVLDALEPDMLDFMLATSVPGKVCGDLASALAG 622 Query: 291 EENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES 350 +GQ +LE++ + LFL R D +W+ YH LF L QR + + + ++HR A + Sbjct: 623 VPDGQAKLEQVAARDLFLGRTGDDRQWYRYHHLFAQILHQRLERDHPGRITDLHRRAHDW 682 Query: 351 WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ 410 + + EA+ H LAAG+ ++L L + S++S L + LP + + P+ Sbjct: 683 FRERHLLREAVDHILAAGEPQRAVELLEEDDLYLLDRSQMSTLLCLIAKLPAELVASRPR 742 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARA-----EHEIKDIREDTMHAEFNALRAQVAINDGNP 465 L L W R RA E+ + R + E + L+ + + Sbjct: 743 LQLTIGWANCELQRLELAQAARTRALEQLDAGEMPERRAAELRVEADVLQGDI---EATA 799 Query: 466 DEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT--EQMARQHD 522 D E + L E L P ++ +V+ + L E E A +Q+ RQ+ Sbjct: 800 DRIEGVRDLVAECLAQPAEYHPFVVSMAALIETYVDCYEFRFEDAYRRQSWAAPYHRQNT 859 Query: 523 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 582 + + F Q L A E +AF L+ E Q P + A++ + Sbjct: 860 GPYSVAYGYCFAGLAKFEQLDLGGAMELYRRAFDLVREAANTQSPHARLTRALLAEVHYE 919 Query: 583 WARLDEAE 590 R+DEAE Sbjct: 920 QGRVDEAE 927 >UniRef50_C0GFG5 Transcriptional regulator, LuxR family with TPR repeats n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFG5_9FIRM Length = 534 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 226/477 (47%), Gaps = 15/477 (3%) Query: 31 NFRLALITSPAGYGKTTLISQWAAGKND-IGWYSLDEGDNQQERFASYLIAAVQQAT--- 86 + L L+++PAG+GKTTLI W G+ D WY+LDE DN+++RF YLI+++Q Sbjct: 40 TYPLTLVSAPAGFGKTTLIRSWLTGREDRAAWYALDEADNKEDRFWLYLISSLQTLKADL 99 Query: 87 -NGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFF 145 G + + A + + S L EL P LV+DDYHLI N IH++M FF Sbjct: 100 GEGPMEMLRSNALSAESEDIESFLVTLLNELFALDKPYILVLDDYHLIENVRIHKNMAFF 159 Query: 146 IRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEA 205 I + P L L + +R+ P ++ R + ++ E+ QL F +E + + Sbjct: 160 IENLPPTLHLAITTRSDPPWPLSRWRAKRKMAELRLDQLRFNEEETGRLLTETKGLALSE 219 Query: 206 AESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDL 265 A+ + + + GW LQL A S N ++ + AG N ++ ++L +EV Sbjct: 220 AQLNTLHEKTEGWIAGLQLAAYSLTSN-NNKDRFIHEFAG-NQRNVFNFLSEEVFTRQPE 277 Query: 266 ATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFG 325 A R FL++++IL L +TG + L +E LF+ +D+ G W+ YH LF Sbjct: 278 AVREFLMQTSILNRFCAPLCDAITGSNDSAEVLSALEAANLFVIPLDNQGIWYRYHHLFS 337 Query: 326 NFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLF 385 + LR + + E+H A + + SEA++H L + + +IL ++ + Sbjct: 338 DLLRHQLSSRQPEMITELHNKAGKWFFEANELSEAVYHFLTVKNLDKVAEILHANSKEIV 397 Query: 386 NHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIRED 445 +L+ L + P + L + P L + +A + EV LLA AE + ++ Sbjct: 398 ESEGPNLIVRCLDSFPDEILRKYPLLAVYKALYHLMRKGREEVGALLALAEENADEKLKN 457 Query: 446 TMHAEFNALRAQVA-----INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 497 H E++++ A V + P E A+ AL LP ++ RI + G+ Sbjct: 458 --HREYSSIVALVKAYHNLFSHKIPQALEH-AQEALRLLPADNYFLRINIAIISGDT 511 >UniRef50_Q0S014 Transcriptional regulator, MalT family protein n=7 Tax=Rhodococcus RepID=Q0S014_RHOSR Length = 1180 Score = 181 bits (460), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 129/419 (30%), Positives = 206/419 (49%), Gaps = 10/419 (2%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG---- 60 +K P V R RL +L A RL LI +PAG+GK+TL +QW D G Sbjct: 343 TKYRPPTPSRALVERGRLAERLHDAARRRLILIHAPAGFGKSTLAAQWRRTLADDGVAVA 402 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W S+D DN F S+LI +++ A + S + L E+ Sbjct: 403 WLSIDADDNNVVWFLSHLIESIRVVRPDLAAELGQILDDHGDESDRFVLTALINEIHTSR 462 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 PL +VIDD+HL+T+P +M F + + +L ++V SR+ L + +RVRD+L+EI Sbjct: 463 DPLTVVIDDWHLVTDPATIAAMSFLLDNGCHHLQVMVTSRSQSGLPLGRMRVRDELVEID 522 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 S L F +E++QF ++ S + D GW ALQL LS R A Sbjct: 523 STALRFDEEESRQFLVDVGGLALDRDAISALRDSTEGWVAALQLATLSLRGRDDPAEF-- 580 Query: 241 RRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 +A ++ H ++ YL + VL ++ F+L +++ + L + G GQ L Sbjct: 581 --IAHLSGRHRGIAGYLAENVLSALEPEILDFMLATSVTERLCADLAETLAGVAGGQGLL 638 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 E+IE + LFL+ +DD EWF YH LF +FLR+R Q + + + ++HR A+ + A S Sbjct: 639 EQIEERDLFLRALDDDREWFRYHHLFADFLRRRLQRDQPSRIADLHRTASRWFAAHELLS 698 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 EA+ +LAA D +++ + ++L S+++ + + L + P L + AW Sbjct: 699 EAVDQSLAAADPDQAAELVDSRGFALIERSQMATVLGLIGKLLPAQIERRPHLQIAAAW 757 >UniRef50_C1BC55 Putative serine/threonine protein kinase n=2 Tax=Rhodococcus opacus B4 RepID=C1BC55_RHOOB Length = 1154 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 136/421 (32%), Positives = 203/421 (48%), Gaps = 14/421 (3%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKNDIG 60 +K P VVR RL+ L + RL LI +PAG+GK+TL SQW + Sbjct: 337 TKFRPPTSTRPLVVRRRLIDTLQSGAHRRLVLIHAPAGFGKSTLASQWRGVLVEDGASVA 396 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W S+D DN F ++L+ AV+Q + + + + + L E+ Sbjct: 397 WLSVDPDDNNVVWFLAHLVEAVRQVRPALARELGQILEDHPPDAARYVLSSLIDEIHSSG 456 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 L +VIDD+H ++ E+M F + H +L LVV SR L ++ +RV D+L+EI Sbjct: 457 ERLVVVIDDWHRVSADETIEAMDFLLDHGCHHLQLVVTSRTQAGLPLSRMRVSDELVEID 516 Query: 181 SQQLAFTHQEAKQFF----DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 L F EAK F RLS +E + + GWA ALQL +LS R A Sbjct: 517 PDALRFDASEAKAFLLDVNGLRLSE----SEVTELAIATDGWAAALQLASLSLRGRDDPA 572 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + R L+G + + + +YLV VL ++ FL+ +AI + L ++TG ++GQ Sbjct: 573 -EFIRHLSGRHHA-IGEYLVANVLHTLEPHLLDFLMATAIAEKVCGDLAAKLTGLQSGQA 630 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 LEE E + LFL +DD EWF YH LF FL++R + A E+H A+ + G Sbjct: 631 LLEEAEGRDLFLTSIDDDKEWFRYHHLFAEFLQRRLERVDPARARELHLTASTWFEDHGM 690 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 SEA+ H +AA D ++ + L +S ++ L + LP P+L L A Sbjct: 691 LSEAVDHVMAAKDFDRAAHLVESGGMELIENSRMATLLGLVAKLPPAVAYNRPRLQLTVA 750 Query: 417 W 417 W Sbjct: 751 W 751 >UniRef50_C8SFS0 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SFS0_9RHIZ Length = 871 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 140/487 (28%), Positives = 218/487 (44%), Gaps = 17/487 (3%) Query: 32 FRLALITSPAGYGKTTLISQWAAGKNDIG----WYSLDEGDNQQERFASYLIAAVQQATN 87 R+ L +PAG+GK+T ++QWAA G W S + DN + F S+L+ A++ Sbjct: 1 MRIVLFAAPAGFGKSTTMAQWAAELARHGRLTAWLSCEATDNDEGAFLSHLVGALRHLVQ 60 Query: 88 GHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIR 147 + A + Q L + + L A + + L DDYH+I + M R Sbjct: 61 -NPAELDLAFQSSPIPQLEVVLSALVAGFAARDAEITLFFDDYHVIETEAVKRFMERLTR 119 Query: 148 HQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAE 207 P N+ V+ SRNLP L + LRV + EIG L F EA+ FF+ +L + + Sbjct: 120 QAPANVAFVIGSRNLPDLQLGKLRVLGDVFEIGPDDLRFVSSEAEAFFNDKLGLSVSSGT 179 Query: 208 SSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLAT 267 +C GWA LQL +LS H+ G N +++D+L+ EV + A Sbjct: 180 VEALCSRTEGWAAGLQLASLSL-SAAHAPETVIGNFTGAN-RNVADFLMGEVFLGLPPAL 237 Query: 268 RHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNF 327 FLL S+I + + V + + + EIE + LFL +D+ WF YH LF +F Sbjct: 238 AKFLLHSSIFQRFSAEACRAVLRVADAEADIAEIETRNLFLVPLDEERRWFRYHHLFRDF 297 Query: 328 LRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNH 387 L + + + +H AAAE + + +EAI HALAAGD + N+A L Sbjct: 298 LIREMERRAPEMIAPLHLAAAEWFGERKMLTEAIGHALAAGDQARAAVFIENNALELIAQ 357 Query: 388 SELSLLEESLKALPWDSLLENPQLVLLQAWLMQ-------SQHRYGEVNTLLARAEHEIK 440 +L + + L LP + + +L L+ WL +Q L+ + K Sbjct: 358 CQLLYVRQLLALLPRKLVDQRIRLQLVVLWLAVHSSQPEIAQQTLANARKLIETGPTDGK 417 Query: 441 D---IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 497 D + T+ AE L A V ++A A AL + P ++ +V+G Sbjct: 418 DPGTLTGTTIEAEIAVLDAAVHSTLERFEDARDTALAALRVIAPDAWFMEGATANVIGYN 477 Query: 498 LHCKGEL 504 L+ G+L Sbjct: 478 LYALGDL 484 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 19/151 (12%) Query: 743 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQL--IQLNTLPELEQHRAQRILR 800 R++D R LL+AL+LA +GFI FV EG + + L +L Q T P L + A R Sbjct: 725 RETD--RHLLEALRLAQPSGFIRSFVDEGRPVVEGLMRLRAAQAKTDPALSAYAA----R 778 Query: 801 EINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGEL 860 I+ A P P + LTQRE ++L + G SN IAG L Sbjct: 779 IIDAAQTMPVAT----------RKPAAPTADKEQ-LTQRETELLRCLSEGMSNRDIAGAL 827 Query: 861 EVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 V+ TT+K H++N++ KL V++R AV+ AQ Sbjct: 828 SVSETTVKWHLKNIFGKLSVSNRVQAVRAAQ 858 >UniRef50_B0HWG7 HTH-type transcriptional regulator MalT (ATP-dependent transcriptionalactivator malT) n=4 Tax=Yersinia RepID=B0HWG7_YERPE Length = 123 Score = 179 bits (454), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 83/117 (70%), Positives = 101/117 (86%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 MLIPSKLSRPVRL +TVVR+RLL KLS A N+RL LI PAGYGKTTLI+QWAA ++++G Sbjct: 1 MLIPSKLSRPVRLQNTVVRDRLLVKLSSAANYRLTLINCPAGYGKTTLIAQWAADQSNLG 60 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 WYSLDE DNQ ERFA+YLIAA+Q AT GHC+ E ++QK QYA+L++LF+QLFIEL+ Sbjct: 61 WYSLDESDNQSERFATYLIAAIQLATGGHCSKSEALSQKHQYANLSALFSQLFIELS 117 >UniRef50_Q1LAZ5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=5 Tax=cellular organisms RepID=Q1LAZ5_RALME Length = 914 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 151/502 (30%), Positives = 242/502 (48%), Gaps = 25/502 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 L+ SKL P L + +VR RL+ + A + RL L+ + AG+GKTTL+ Q+ AG+ Sbjct: 19 LVASKLVPPRALPNHLVRSRLVDVMVDAASARLILVRAAAGFGKTTLMQQYLERCQAGQR 78 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 W D DN +RF +L + + + +R A IE+A Sbjct: 79 ACVWLRCDAADNDLQRFLLHLHTGLLRLPG----LTRHQRDERSDTIAGETIAHEIIEIA 134 Query: 118 EWHS-PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 ++ P +++DD +I N I E ++ +R LV+ +R P LG+ LR R QL Sbjct: 135 ASYAHPFAILLDDLEVIQNDAITEYLQQLVRVLSPQGVLVIGTRATPDLGLGGLRARGQL 194 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 L+I L F+ +EA F + P+ E + + GWA A+ L LS R H Sbjct: 195 LDINPAALRFSAEEAASFIRDKCGLPLPDGEIATLWRCTEGWAAAVYLATLSLR--GHPN 252 Query: 237 HKS-ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 H + R +G N L++YL +++L + R FLL++++L ++ L VTG + + Sbjct: 253 HAAFVRSFSGTNI-ELAEYLAEDILMGQSESCRDFLLQTSLLGQLSAPLCDAVTGRHDSR 311 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 L +ER LF+ +D +W+ YH LF +FL+ R Q + +H AA+ ++++ Sbjct: 312 EMLSFLERNNLFITPLDGEHQWYRYHSLFASFLQHRLQVTYPDKARALHVAASRWYLSED 371 Query: 356 FPSEAIHHALAAG---DALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP-QL 411 P AI H L AG +AL L I H +LF + LL L + LL +P ++ Sbjct: 372 RPVPAIEHLLQAGLDDEALPLIAI---HTPALFQAGRVRLLARWLDRIDRKRLLADPHRM 428 Query: 412 VLLQAWLMQSQHRYGE-VNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER 470 L AW++ RY E + T+ A ++ ++ + E LR V + + EA Sbjct: 429 GLAYAWVLLLNRRYSEAMQTMAALLAADVPADQQAKIAFEVETLRC-VLLAMTDQIEACL 487 Query: 471 LAKLA-LEELPPG--WFYSRIV 489 A LA LE +PP + Y+ +V Sbjct: 488 AAGLAHLERIPPDAPFRYASVV 509 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 31/165 (18%) Query: 741 AGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILR 800 AGR+S+A L +A++LA+ G + FV EG+ +A LR+ R I+R Sbjct: 765 AGRQSEAFEPLTEAMRLASHEGLVRTFVDEGDRLADLLRRW---------ADAREAEIVR 815 Query: 801 EINQHHRHKFAHFDENFVERLLNHPEVPELIR------------TSPLTQREWQVLGLIY 848 A D FV +L P + PLT RE +VL ++ Sbjct: 816 ----------AGIDLQFVRTVLAQIPTPLAVAGEEVNKARGAAIAEPLTTREQEVLQMLA 865 Query: 849 SGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 +G+ N IA ++ V+ TIK+H+R + KLG R +AV + L Sbjct: 866 AGHRNRVIAEKMFVSELTIKSHLRKINAKLGAQSRTEAVAIGRSL 910 >UniRef50_D1UL69 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UL69_9BURK Length = 921 Score = 178 bits (452), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 140/448 (31%), Positives = 213/448 (47%), Gaps = 19/448 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK----N 57 L+ +K S P V R +LA+L RLAL+T AGYGKTTL++QW + Sbjct: 30 LVSTKFSPPRIGAKHVARADVLAQLQRMQYCRLALVTGSAGYGKTTLLAQWREARLKTGA 89 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 ++ W SL D F L AA+Q+A G + + +++ + A + Sbjct: 90 EVAWLSLTAEDKNYIDFCGALFAAMQRA--GMAVEMDLPLESTSASAMDASIAAIVEAAI 147 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + LYL IDDY + P+ H M+ + H P NL V+ SR P L ++ LR+ +Q++ Sbjct: 148 DLPKDLYLFIDDYQHVEAPLAHRFMQKLLDHGPGNLHFVIASRVAPPLSLSRLRMMNQIV 207 Query: 178 EIGSQQLAFTHQEAKQFFDCRLS-SPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 EI S L F E + F D L I A E + I + SGW + LQLI + + N A Sbjct: 208 EIESAGLPFDLAETRAFIDENLGPGKINADELTLIQELTSGWPSCLQLIVIMLK-NRPDA 266 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 L +S L YL +EV+ ++ F + +ILR + AL VT E+ Sbjct: 267 RAMLHDLVW-RSSDLQTYLSEEVMAHLPAELAGFAVALSILRRFSPALARAVTDNEHASD 325 Query: 297 RLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 ++ +E + L + R+D D W+ +HPLFG FL R E E+HR A+ + A Sbjct: 326 LVQRMENENLLIIRVDSDDRSAWYRFHPLFGEFLATRLAQREPEEARELHRRASRWFAAH 385 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHA---WSL-FNHSELSLLEESLKALPWDSLLENPQ 410 G +EA+ HA A GD ++ WSL + L LLE+ LP ++L ++P+ Sbjct: 386 GQLAEAVRHASAGGDVEFAASVIERSTPAKWSLEYLSPTLHLLEQ----LPEEALFQHPK 441 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARAEHE 438 L+ + + R + LA + E Sbjct: 442 LLFMACLTVALTTRPAKAKAWLAHLKTE 469 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 13/143 (9%) Query: 747 AQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHH 806 AQ L+ A++ A R G + FV EG + L ++++ TL + A R E+ Sbjct: 780 AQACLVRAVESAQRLGLVRTFVDEGAPAGKLLARMVRERTL----EGGALRYANEL---- 831 Query: 807 RHKFAHFDENFV-ERLLNHPEVPELIRTSP-LTQREWQVLGLIYSGYSNEQIAGELEVAA 864 F E+ V + P + P LTQRE ++LGL+ SN++IA L + Sbjct: 832 ---LDRFPESSVSDGTTGSPRRSTGSKLQPVLTQREIEILGLVAQAMSNKRIALALNITL 888 Query: 865 TTIKTHIRNLYQKLGVAHRQDAV 887 T+K ++RN++ KLGV+ R DA+ Sbjct: 889 ETVKWNLRNIFAKLGVSSRYDAM 911 >UniRef50_B6IXM7 Transcriptional regulator, LuxR family protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IXM7_RHOCS Length = 907 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 133/443 (30%), Positives = 212/443 (47%), Gaps = 19/443 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 +IP+KL+ P +L V R L+ +L + RL L+ AG GKTTL+ QW A Sbjct: 11 IIPTKLAPPHQLVDLVDRAGLVGRLEEGRSARLQLVVGAAGSGKTTLLGQWQRQLARAGI 70 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 GW SLDE D SY++ ++ +A + Q + + L ++A Sbjct: 71 PCGWLSLDEDDGDPTHLISYVVLSLARAGVPLGQLTRLAQQGLVDMPCKAALSALVNQIA 130 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 P+ L++DD+H + + + + P NL+LV+ R+ P+L +A L+ Q+ Sbjct: 131 GHGGPVVLILDDFHRAESREVDALLGGLLSFLPANLSLVISGRDRPKLPLAGLKAMGQVR 190 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+ + L F+ QEA+ L + A+ S + + GWA A+QL AR + Sbjct: 191 ELTAGDLRFSAQEARHI----LHDLLPDADISALTERTEGWAVAIQL----ARIWLEAGS 242 Query: 238 KSAR---RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 AR R G + ++DYL ++VL ++ R FL+++AIL +N L VTG Sbjct: 243 DRARLLDRFCG-STRDVADYLAEQVLADLPEDLRQFLMQTAILERVNADLAEAVTGRGGA 301 Query: 295 QMRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWM 352 + RL + R L +D +G W YH L ++LR + AA LP++H A+ + Sbjct: 302 RARLARLSRLDSLLVPLDGEGSGGWLRYHHLLRDYLRDVLARDHAALLPDLHARASRWFE 361 Query: 353 AQGFPSEAIHHALAAGD-ALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 A+GF +EA+ HA GD A R + WSL + LL L+ P +S L +P+L Sbjct: 362 ARGFLTEAVRHARLGGDLASAARLVESAGGWSLILSGGIGLLRNLLQNFPAESFLRHPRL 421 Query: 412 VLLQAWLMQSQHRYGEVNTLLAR 434 + + +L + LL R Sbjct: 422 GISRVYLHIKDGELAQARRLLHR 444 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 21/146 (14%) Query: 751 LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKF 810 L AL LA G F+ GE +A LR ++ + REI + Sbjct: 782 LAQALTLAAPEGLRQVFLEHGERLAPLLRDCLRRS--------------REIGLDSLARA 827 Query: 811 AHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTH 870 F E ER L P L+ RE V+ + G SN++IA L + T+K H Sbjct: 828 --FAEEL-ERTLARPR----DEADTLSPRERAVVIELCRGASNKEIARALAMTENTVKFH 880 Query: 871 IRNLYQKLGVAHRQDAVQHAQQLLKM 896 ++N++ KLGV R A+ A++LL + Sbjct: 881 LKNIFGKLGVDRRAAAIITARRLLGL 906 >UniRef50_C0GFP5 Transcriptional activator domain protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFP5_9FIRM Length = 1123 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 176/653 (26%), Positives = 287/653 (43%), Gaps = 34/653 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 ++ SKL P + R RLL K + + +L LI++PAGYGKT LISQ+A K + Sbjct: 7 ILASKLLAPRTGVRLLARPRLLEKFTDYQSRKLTLISAPAGYGKTVLISQFAGQVKAQVV 66 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNG-HCAICE-----TMAQKRQYASLTSLFAQLFI 114 WY LD DN F +L+A +++ G I + T QK T+L L Sbjct: 67 WYQLDHFDNDLALFVQHLLAGIEKHLPGLGVEIMDLVERGTDLQKELRRITTALVNSLTA 126 Query: 115 ELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRD 174 L E + LVIDDYH I +H M + + P+ + +V+ SR LP L + L++ Sbjct: 127 NLEE---EMILVIDDYHAIEEEAVHGFMEQLLEYLPDKVHMVLSSRTLPPLHLGRLKIAG 183 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 + EI + L F E F + P+ S + ++ GWA AL+L LS Sbjct: 184 LMEEINLEDLRFRTDEISGFLLAENNEPVSGETISYLDEETGGWAAALRLAGLSINSVKV 243 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 SARR + + YL EVL N+ F+ +A+L M + ++ Sbjct: 244 RQKASARR-TNSHRKEIYHYLASEVLQNLPQDLADFVQSTAVLDFMTPQICDLFLDRDDS 302 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 L+ +E Q LF + G+ + YH LF +FL R L + + + A + ++ Sbjct: 303 YEVLDSLEEQNLF--AVVGEGDVYRYHHLFRDFLLSR----LGEKKSNLLQKAGQCYLQA 356 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G+P A+ L AGD + N A ++ HS + L+++P D E+P+++L Sbjct: 357 GYPVRAVECFLGAGDFGRAVHAVENVAGTMLLHSRWQTVRRWLQSIPEDIKQEHPKMLLF 416 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + ++ + R + L+ +A + + + A++ + G+ ++ ++ Sbjct: 417 EGVVLLNSGRLEQAEGLIRQAAEALAQTGDQDGIFQTKLYLARILRSRGDYGQSMQM--- 473 Query: 475 ALEELPPGWFYSRIVA-----TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 LEE+ P F R VA T VL +GEL +++ L+ Q +A Q H A Sbjct: 474 -LEEILP-QFAGRPVAEWYDMTMEYSLVLGMRGELDKAVHLLNQALTLAEQEGEVHIAAQ 531 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR-AQLLWAWARLDE 588 + + EI F +G A +A ++ EQ + FL+R A + W LD+ Sbjct: 532 LVERLGEIHFIKGDYSKAVTVHHRAAEMAPEQERQS-----FLLRDSIATIYHDWGDLDQ 586 Query: 589 AEASARSGIEVLSSYQPQQQLQ-CLAMLIQCSLARGDLDNARSQLNRLENLLG 640 A A++ ++ + L L L A G D A R +L G Sbjct: 587 ALEYAQNSLKAKEQLGMTEALPYALQQLAVVQAALGQFDVAEENFMRSIDLAG 639 >UniRef50_A9B3X7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B3X7_HERA2 Length = 877 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 168/611 (27%), Positives = 277/611 (45%), Gaps = 22/611 (3%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 +++ +KL+ P V R+ +L +L+ R++LIT+ AG GKTTL+S A + + Sbjct: 7 LVLLTKLAAPQIPSTLVERQHVLERLTCRG--RVSLITASAGSGKTTLLSSLANARQRVA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQ--QATNGH--CAICETMAQKRQYASLTSLFAQLFIEL 116 W +LD DN RFA YLI A+Q + T G A+ + Q A LT L ++ + Sbjct: 65 WLTLDSNDNDAIRFARYLIVALQTLEPTLGRNAMALLNGLQQPAIEAVLTLLINEISVAQ 124 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 +P+ LV+DDYH I V+H ++ + I P L L++ SRN+P L + R + L Sbjct: 125 P---APMLLVLDDYHWIDAQVVHRALAWLIDQLPAQLHLIIASRNVPPLPLGRWRGKGYL 181 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 E+ + L F E Q L + + + + GW +QL ALSA+ + Sbjct: 182 TELDASVLQFNSAETAQLLAQTLGDLPDQSTIDWLTERTEGWVAGIQLAALSAKDRANVQ 241 Query: 237 HKSARRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG--EE 292 L+G + SH + DYL +EVLD +D AT FLL +++ + AL ++ Sbjct: 242 QI----LSGFSGSHRYIFDYLAEEVLDQLDPATLEFLLATSVAERLTGALCDQLLDWQPG 297 Query: 293 NGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW- 351 G L ++ LFL +DD W+ YH LF FLR R Q +L + P A +W Sbjct: 298 TGAQMLAQLADAQLFLVALDDERRWYRYHHLFAEFLRFRLQ-QLDPQAPAEFLQRASAWH 356 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 A + AI+++LAA D +++ E + L LP L ++ L Sbjct: 357 AANNDLNSAINYSLAANDHQQAANLIAQFGRDALMRGEALSVRSWLARLPAIQLSQSSHL 416 Query: 412 VLLQAW--LMQSQHRYGEVNTLLARAEHE-IKDIREDTMHAEFNALRAQVAINDGNPDEA 468 L+ AW L+ E + ARA E + + +AE + A + N + + Sbjct: 417 ALIAAWSQLLTVDILGIEEHLQQARAHLEALPQAEQARANAEIATIEAVLLRFGDNIEHS 476 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 + ++ ALE + R + L G LT ++A + ++ L Sbjct: 477 MQHSQAALELVEHDDLVLRGILLGNLTVSARLTGNLTIAVAAASDAVAINQRSGNTFAML 536 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 ++ +I QG L+ A T + +L +E+ Q+P + ++ + W +L+E Sbjct: 537 LAIADLGQIQAQQGHLRKAAATYRRGIELASERGWHQVPALGLIHVGLGEVCYEWNQLEE 596 Query: 589 AEASARSGIEV 599 A+ A I + Sbjct: 597 AQIHAEQAIAI 607 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 34/53 (64%) Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 PL++RE +VL L+ G+SN +IA L +A T+K H+ NL KL R +AV Sbjct: 815 PLSEREIEVLKLLALGHSNAEIAERLVIAIGTVKRHVNNLLGKLNARSRTEAV 867 >UniRef50_Q397N7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Burkholderia sp. 383 RepID=Q397N7_BURS3 Length = 889 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 125/433 (28%), Positives = 202/433 (46%), Gaps = 12/433 (2%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQ----WAAGKNDIGW 61 K S P +VR LL +++ + ++ +P G GK+TL+ Q A + IGW Sbjct: 25 KFSPPAARRGAIVRHALLERVTRLGVPHVVILHAPLGSGKSTLLRQIMEIGTAKRWTIGW 84 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 +LDE DN RF +Y IA V Q A A ++ A+ ++ + + Sbjct: 85 LTLDENDNDPRRFETYFIALVTQMV----ADAGGPAPEQSPATTDNMIDWVLDRFGQIPG 140 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P+ L IDD I +P I +R +R P + + SRNLP +G++ L V ++ L + Sbjct: 141 PIGLCIDDLQWIRDPAILRFLRDLLRALPGRCRIYIGSRNLPDIGVSTLLVAEEALVLRM 200 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALS-ARQNTHSAHKSA 240 + L F+ E+ +F ++A +S + GW LQL L+ AR N Sbjct: 201 EDLRFSPAESVEFMTASDDEALDAEIASFVQARTEGWPAGLQLFKLALARGNPWHTVDEM 260 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 R + L YL + L + FLLK+++LR +N +L VTG + L+ Sbjct: 261 RDCGPLE---LVRYLSENTLSLQPPDAQVFLLKTSLLRRLNGSLCAEVTGAHHADAVLQR 317 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +E+ GLFL+ +D W+ YH LF FL +R + + ++HR AA ++ G P EA Sbjct: 318 LEQDGLFLEALDGNPGWYRYHSLFARFLSERLGQDDPDGVLDVHRRAAHWYVRHGVPEEA 377 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 ++HA+ A + + L A L +EL+ + LP + +L N L + AW + Sbjct: 378 MYHAVEAREYALAVRTLDEWASRLIAGAELATVAYWFDRLPLNEVLGNRSLAIKVAWALV 437 Query: 421 SQHRYGEVNTLLA 433 R + LL+ Sbjct: 438 FLRRGSPTHPLLS 450 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 39/56 (69%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 L+QRE ++L L+ SG SN +I+ +L ++ T+K H++N+Y KL V +R A+ AQ Sbjct: 830 LSQREQEILRLLCSGASNREISEKLFLSENTVKFHLKNVYLKLDVKNRAQAILKAQ 885 >UniRef50_A5V8I9 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V8I9_SPHWW Length = 899 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 131/448 (29%), Positives = 223/448 (49%), Gaps = 32/448 (7%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQ----WAAGK 56 MLI +KL+ P R + RE L+ +++GA RL ++++PAGYGKTTL+SQ W G Sbjct: 14 MLIRTKLAPPNRTIDLLWREALVGRITGAAE-RLTVLSAPAGYGKTTLLSQCHAQWRRGD 72 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIE- 115 + WYS+D+ + ++F +YL+AA+ +A + +Q+ A L L A+ Sbjct: 73 VAVAWYSVDDSKFESDQFFAYLMAALHRA-----GLPLPYSQEAIDAGLPGLAAEAAARA 127 Query: 116 ----LAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR 171 L P+ L+IDDYH I +P + + + I P + +++ R +P++ +++LR Sbjct: 128 IVVALEASEEPVRLIIDDYHRIASPATNRFLDYVIERMPNHAAIIMAMRGMPEIALSSLR 187 Query: 172 VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIAL--SA 229 VR QLL + + F+ EA +F + SS ++ E + + GW ALQL+ L + Sbjct: 188 VRGQLLLLEQNDIRFSDSEALRFLSDQ-SSKVDWGE---LIERTQGWPAALQLLRLWLAG 243 Query: 230 RQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT 289 R + RR +S L+DYL ++V + + FLL+++I + L ++ Sbjct: 244 RDQVDTLEHLTRR-----SSDLADYLAEQVFSGLPADVQKFLLETSIAERICTGLGDAIS 298 Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIH-RAAA 348 G ++G L+++ R+ L + +DD G W+ +HPL FL + A L +H RAAA Sbjct: 299 GRDDGADMLDQMRRRNLLVTPLDDDGVWYRFHPLLREFLYDMLARDSQARLDALHLRAAA 358 Query: 349 ESWMA-QGFPSEAIHHALAAGDALMLRDIL-LNHAWSLFNHSELSLLEESLKALPWDSLL 406 W+A + EA+ HA D I+ W + L+LL + + S Sbjct: 359 --WLAGENLLPEALGHAARVSDRTAATAIMEAAGGWRMAIRGGLALLRH-VDEIDQVSPA 415 Query: 407 ENPQLVLLQAWLMQSQHRYGEVNTLLAR 434 + P++ L + + R E +L R Sbjct: 416 DFPRVTLGRVYFAAQNGRLPEARAMLDR 443 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 37/58 (63%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 +T RE VL + G S++++A L VA +TIKTH N+Y+KL VA R A+ A+ L Sbjct: 839 VTPREIDVLRGLADGLSSKEMARSLGVAESTIKTHRINIYRKLNVATRSRAISAARNL 896 >UniRef50_A8VQD6 MMPL domain protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VQD6_9BACI Length = 722 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 146/572 (25%), Positives = 246/572 (43%), Gaps = 11/572 (1%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWA--AGKNDIGWYSLDEGDNQQERFASYLIAAV-- 82 S A + RL L+ +PAG+GKTT + W +GK WY++DE D+ F SY++AA+ Sbjct: 36 SDAFSRRLTLVQAPAGFGKTTAVRNWITHSGKP-AAWYAMDEQDHHPLTFWSYVMAAIGV 94 Query: 83 ---QQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 + + S TS L P +VIDD+H ++P I Sbjct: 95 IQPETVREPQAILMNPETDDPGDDSWTSWMVPFLNALMHAEDPFLIVIDDFHFASSPEIT 154 Query: 140 ESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRL 199 +M + I H P + +++ +R P I + + L ++G +L F+ EA F+ R Sbjct: 155 SAMAYLIEHLPSTVHVLITTRERPPWPIVKWQAKGWLTDVGKDRLRFSIPEADMLFEKR- 213 Query: 200 SSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEV 259 + + + + + GW T L+L +S T A + + L+ +L +EV Sbjct: 214 GVRVNPSLTEELVNWSEGWITGLELTLVSHLYGTMQPGHDALGHSDLGVKTLTAFLTEEV 273 Query: 260 LDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFC 319 L + F+ SA+L + + V + Q + +E + LFL R++D G WF Sbjct: 274 LRQLPGHLLDFMETSAVLHKFSPVMCDEVLERSDSQEVIRFLEEKQLFLVRLNDDGSWFR 333 Query: 320 YHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLN 379 YH + G L R + A + IH+ A++ G EAIHHA A D + IL Sbjct: 334 YHHIMGETLTDRLRQSDPAVIRRIHQRASDWLSRNGALHEAIHHADKAEDEGRVAQILHY 393 Query: 380 HAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEI 439 HA SL E E + AL + L P+L + + + L+ A Sbjct: 394 HAESLTYSREPVAFIERINALSHERLRSFPELFAYSLFYRLLMKGHDGCDALINEARTLS 453 Query: 440 KDIREDTMHAE--FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 497 D R++ + E + L D+A A ALE+LP ++ R+ A G++ Sbjct: 454 CDNRQNQLVYEGMLDVLSFFYWTGHHAFDKARVYADSALEKLPQENYFWRMSAAVFSGDL 513 Query: 498 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 557 L+ G +L ++ M +H+ ++A+ + ++++ F G L A +T QL Sbjct: 514 LYYAGAPEEALPYFEEAHAMNLKHERHYFAISTELKKAVTFFELGRLSDARKTVASIEQL 573 Query: 558 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + F+ + +L L+EA Sbjct: 574 AEAHGFSGISKMGFVHTLEGELTREQGNLEEA 605 >UniRef50_B5WTD5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Burkholderia RepID=B5WTD5_9BURK Length = 921 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 129/486 (26%), Positives = 233/486 (47%), Gaps = 18/486 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 LI +K+ P V R LL +L + L+ +PAG+GKTTL++ W A + Sbjct: 16 LIQTKMMPPRIPAGCVQRPELLRRLDERRPRHVTLVIAPAGFGKTTLLAVWSEAQARKRR 75 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLD D+ ++ +YL+AA+ +A+ + + + + ++ + L +A Sbjct: 76 PVAWLSLDGEDDDPQQLGAYLVAALSRASKDVAWQAQQLLDNDAHTPVRTIISVLLNGIA 135 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + ++LV+DD ++ + + +R+ PENL +++ +R P L + LR D+L Sbjct: 136 AFGRDVFLVLDDVDRLSAKPVLAIVSRLLRYAPENLHVLLGARGEPALSLGGLRSPDKLS 195 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + + L F+ +A+ FFD ++P+ + GW LQL +L + A Sbjct: 196 RVNADDLRFSLDDAQAFFDRTGNTPLNRNSVELLNTATEGWVAGLQLASLGLNRVDDVA- 254 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT-GEENGQM 296 A LAG + + YL D V ++ FL ++IL + L V GE + Sbjct: 255 ALASHLAG-SRFGIDRYLSDTVFAHLPPHMLTFLQYTSILERLTATLCDEVMGGEADSGE 313 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG- 355 +L+ +ER +F++ +D+T +W+ YH L + LR+R + ++P +HR A+ W A+ Sbjct: 314 KLDWLERHNVFIRPLDETQDWYRYHALLSDALRRRLVRQTPRQVPLLHRRAS-LWFARAR 372 Query: 356 -FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 +P EA+ HALAAGD N A + + +L ++ LP D + P+L L Sbjct: 373 LWP-EAVRHALAAGDVDQAAQWAENCAMEMLQRGDPFMLPGWIRKLPPDVIAGRPRLRLA 431 Query: 415 QAWLM-------QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDE 467 +AW + ++ G + R + + + ++ AE NA+RA +A + + Sbjct: 432 KAWGLAMSLETARASQEIGAIVDEFERMSRDDRSVADEVAWAEINAIRALIACVSDDSEH 491 Query: 468 AERLAK 473 A L + Sbjct: 492 ALELGR 497 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 22/165 (13%) Query: 732 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 791 LLL ++ +G A L +AL++ G IS FV EG M R L++ Sbjct: 765 LLLALVHEHSGASDKAFSALENALRIGCAMGLISSFVDEGPPM----RALLE-------- 812 Query: 792 QHRAQRILREINQHHRHK----FAHFDENFVERLLNHPEVPELIRTSP--LTQREWQVLG 845 R +R EI+ H + FDE VE++ + + +P L+ RE ++LG Sbjct: 813 --RFRRTPSEISTAHAAYIGTLLSAFDE--VEKMPSPSSSGADTKIAPGTLSARELEILG 868 Query: 846 LIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 + G SN++I L++A T+K H++N+++KL V R +AVQ A Sbjct: 869 YVARGMSNKEIGRSLKLAPETVKWHMKNVFEKLNVNSRFEAVQSA 913 >UniRef50_B8KM86 Transcriptional regulator n=3 Tax=Gammaproteobacteria RepID=B8KM86_9GAMM Length = 925 Score = 172 bits (436), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 141/491 (28%), Positives = 226/491 (46%), Gaps = 17/491 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG- 60 LI +KL +P V R+RLL K+ A + L L+++ AG GK+ +++ W + G Sbjct: 25 LIRTKLHKPPLPSDYVCRDRLLDKMDKAMDVPLTLVSAGAGTGKSVMVAAWLEDRGHPGA 84 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLD+ D RF YL+A ++ G + + + + A EL Sbjct: 85 WLSLDDSDGDLRRFLRYLVAGLESLHPGSLQDTAALLDAPELPPVAVIAAHFTNELDRST 144 Query: 121 SPLYLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 P LV+DDYHL+ +HE +R +++H P++ L+++SR P L + +LR ++ EI Sbjct: 145 MPQVLVLDDYHLLDPKSSVHELIRGYLKHPPQSWHLILVSRKDPPLALGSLRGAGKINEI 204 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 Q L F+ E + S + + I V GWA L+L+ L+ RQ A Sbjct: 205 RQQDLPFSIAETAGLLSGSVPSGLGEKQIEAIQLRVEGWAAGLRLVGLACRQ----APDI 260 Query: 240 ARRLA--GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRV-------TG 290 R +A G N + YL+DEVL + A +L+K+A+L AL+ + T Sbjct: 261 DRFIAQLGGNLPDTTAYLMDEVLTTLPAAFSGYLIKTAVLDRFCPALLDAIHPDAEPATT 320 Query: 291 EENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAA-ELPEIHRAAAE 349 E +G +E + LF+ +D EWF YH +F L + + + E+ +H A+ Sbjct: 321 EMDGTRFVELLNHSNLFVVPLDANCEWFRYHHVFQQLLLDQLKQVCSPNEIHALHSNAST 380 Query: 350 SWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 + QG EAI HA+A D DI+ H + S L+E L LP + P Sbjct: 381 WFEQQGCIDEAIKHAVAT-DVQAAADIVERHRNEPLRNDRWSELQEWLDMLPASIKMSRP 439 Query: 410 QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 L+L WL + + +L + D+ + AE N + VA +G E+ Sbjct: 440 SLLLCHGWLASFRLEIDVMAVILQTLDGLEVDLANPILVAEKNFFSSVVAYWEGRFAESL 499 Query: 470 RLAKLALEELP 480 R ++ A+ P Sbjct: 500 RFSEAAIAVNP 510 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 21/157 (13%) Query: 742 GRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR--AQRIL 799 GR+++A+ VL++ L+L ++ FV GE + L + + HR Q +L Sbjct: 773 GRENEARTVLIECLELGGEAEWMQPFVEAGEPLIGMLEGISKTG------HHREFIQSVL 826 Query: 800 REINQH----HRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQ 855 +Q+ R K + P VP+ + + LT RE +L L+ N+Q Sbjct: 827 SAYDQYVAAASRGKGTG---------VATPHVPDHVGLTDLTNRELDILELLAQRLQNKQ 877 Query: 856 IAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 I L ++ T+K H++++YQKL V++R+DA+ A + Sbjct: 878 IGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKATR 914 >UniRef50_Q5Z362 Putative serine/threonine protein kinase n=1 Tax=Nocardia farcinica RepID=Q5Z362_NOCFA Length = 1145 Score = 171 bits (434), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 119/416 (28%), Positives = 204/416 (49%), Gaps = 6/416 (1%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG---- 60 +K P V R RLL L RLALI +PAG+GK+T+ +QW A D G Sbjct: 335 TKFRPPTPARAPVPRPRLLEVLRAGGRRRLALIHAPAGFGKSTVAAQWRAELTDQGVPVA 394 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W LD D+ + F ++L+ A+ + A + ++R ++ + + L E+ Sbjct: 395 WIGLDHDDDNEVWFLAHLLQAIHRVRPAIGAGLDQALEERPADAVAFVISTLIDEVHAGG 454 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 + +VI+D+H IT+P H +M + + +L VV SR+ L + ++RV D+L+EIG Sbjct: 455 ETIVVVIEDWHRITDPGAHRAMAALLDNGCHHLRFVVTSRDQSGLPVNSMRVHDELVEIG 514 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 S QL T E Q R + + +I GW A+QL++L+ R N + Sbjct: 515 SAQLRLTRAETGQILVERNGFELTDKQVEQIHRVTDGWPAAVQLVSLALRGNPDPQRLIS 574 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 G + + +YL + VLD ++ FL ++ +N +L ++ + ++ L + Sbjct: 575 ALPEGGHG--IREYLAENVLDTLEPRMLDFLTAISVTERVNASLAAALSEDSEAELLLAQ 632 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 E++ LFL+R++ EW+ PLF LR R + AA+L +HR A+ + F ++ Sbjct: 633 AEQRELFLRRIEHDPEWYRMQPLFAEHLRARLERTDAAKLRALHRKASRWYAEHQFLRKS 692 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 + HALAA D + D++ L + S L+ L ++ LP + +L++ A Sbjct: 693 VDHALAATDLKLALDLVEGGGMDLIDGSRLATLLGTVSKLPVQQVTSRSKLLMAVA 748 >UniRef50_B9K0P0 Two component response regulator n=1 Tax=Agrobacterium vitis S4 RepID=B9K0P0_AGRVS Length = 896 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 116/400 (29%), Positives = 195/400 (48%), Gaps = 17/400 (4%) Query: 33 RLALITSPAGYGKTTLISQWAAGKNDIG----WYSLDEGDNQQERFASYLIAAVQQATNG 88 RLAL+ +PAG GKTTL++QW +D G WYS E D FA L+ A+QQ+ Sbjct: 61 RLALVHAPAGSGKTTLLAQWHRSLSDAGFSTVWYSASEDDKDPFNFAEGLLQALQQSIAD 120 Query: 89 HCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRH 148 + ++ + LT+L I PL L IDDYHL E++ + Sbjct: 121 NRDHLPSLDRADALQRLTALLTDQSI-----RQPLALFIDDYHLAEGGDGGEAINTILAS 175 Query: 149 QPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAES 208 + +LT+V+ SRN P + + R ++++I + L F+ +E + FF + + A ES Sbjct: 176 RLPSLTVVLASRNRPAIPVGRYRANGEMIDIAVEDLHFSEEETEAFFRTASNVALTADES 235 Query: 209 SRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH--LSDYLVDEVLDNVDLA 266 ++ D GWA L+L AL + T + +A + SH +DY ++EV+ + Sbjct: 236 RQMHDHTEGWAVGLRLAALVTGRATGNFVAAA-----PSGSHRAFADYFLEEVIAGLPAE 290 Query: 267 TRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGN 326 FL K+++L ++N L VTG+ +G L +E+ LF+ + T W+ YH LF Sbjct: 291 VCDFLAKTSLLETLNADLCNAVTGQRDGDRMLAFLEQSQLFVVELPGTQRWYKYHHLFQE 350 Query: 327 FLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHA-WSLF 385 FL+ R + + +IH AA+ ++ G P +A+ HA A + +++ + + Sbjct: 351 FLQTRLYGDDRPAVEDIHARAAQWFIDNGSPVDAVRHAFLARQSKWAAELIETYCLYDYL 410 Query: 386 NHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRY 425 +H ++ LP ++ E P L+ L W + R+ Sbjct: 411 SHGRFDTYSRWMQQLPREAREERPLLLFLHVWRSINMRRF 450 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 34/52 (65%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 LTQRE VL L+ G SN +IA L++ T+K+H +N++ KLGV R AV Sbjct: 840 LTQREDDVLQLMRWGLSNSEIATRLDINLNTVKSHAKNIFAKLGVKSRTQAV 891 >UniRef50_A2SJY0 ATP-dependent transcriptional regulator-like protein protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SJY0_METPP Length = 905 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 154/549 (28%), Positives = 237/549 (43%), Gaps = 27/549 (4%) Query: 15 HTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND----IGWYSLDEGDNQ 70 H V R LLA+L R+ + PAG+GKT+L+ Q A GW SLDE DN Sbjct: 26 HAVERSALLARLFRDVAERVVVFQGPAGHGKTSLMLQAQAASASGGALTGWLSLDESDND 85 Query: 71 QERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDY 130 R +L A+ ++T L L E P+ L +DD Sbjct: 86 IRRLLGHL-QALLTVLGSQSPTPPNEDYAGSAGTITPRSDWLIGRLLELGRPVALFLDDL 144 Query: 131 HLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQE 190 H IT+P +R I + P+ + + SR +P++G+ L V D+ L + ++ L F+ E Sbjct: 145 HAITDPGALRLLRELITNAPDRIRWFLASRVVPEVGLPRLVVGDEALVVSAEDLRFSRAE 204 Query: 191 AKQFFDCRLSSPIEAAESSRICDDVSGWATALQL--IALSARQNTHSAHKSARRLAGINA 248 + FD + E I GW A+QL +AL + HS G Sbjct: 205 MRHVFDADRGLSVSDTELDAIFRGTEGWPAAVQLYRLALGSASVRHSLASGC----GGAP 260 Query: 249 SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFL 308 ++DYL + VL + FLL++++L M+ AL V G +GQ L +ER GLF+ Sbjct: 261 REVADYLAENVLGQQPPPVQDFLLQTSVLSRMSAALCDDVLGRSDGQEMLASLERDGLFV 320 Query: 309 QRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPE----IHRAAAESWMAQGFPSEAIHHA 364 +R++ WF YH +F NFL Q +LA PE +HR AA + +QG EA+HH Sbjct: 321 RRLESGEGWFTYHAIFANFL----QEQLARTQPEHRVAVHRRAAAWFESQGQLEEALHHH 376 Query: 365 LAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 L+AGD ++ + + +L + ++ LP D+ P + + +W R Sbjct: 377 LSAGDDDRACEVFDHWSDALVPDGHFATVDRWSHRLPADAATRRPGIAVKLSWAFTFLIR 436 Query: 425 YGEVNTLLA--RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG 482 + ++ LL RA + I D AL + D E +A E Sbjct: 437 HEQLAPLLPVLRANLARRLIEGDPR----LALSMAAVLQDDPARALEYVAHTEHREPTSN 492 Query: 483 WF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 F + +V G V +GE +L + Q ++ + + +SL+ L A Sbjct: 493 RFRNFELAAGHNVRGFVGMMRGEFGPALHSLAQGRSLSERSNATFTLAYSLVHSGLTLVA 552 Query: 541 QGFLQTAWE 549 QG L A E Sbjct: 553 QGQLPEAVE 561 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/54 (48%), Positives = 38/54 (70%) Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 PLT+RE +VL ++ SNE+IA L V+ T+K H+RN+Y KLGV R +A++ Sbjct: 842 PLTKREHKVLAMLVDYQSNEEIASALCVSRDTVKFHVRNIYSKLGVKTRLEAIR 895 >UniRef50_B1KGF0 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KGF0_SHEWM Length = 896 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 215/917 (23%), Positives = 386/917 (42%), Gaps = 101/917 (11%) Query: 19 RERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-----GKNDIGWYSLDEGDNQQER 73 R RLL LS A L SPAGYGK+TL+SQ+ G + W ++D DN+ + Sbjct: 26 RTRLLKLLSQAEAKSLITAVSPAGYGKSTLLSQYVEMLNQQGNAQVIWIAIDPSDNEPNK 85 Query: 74 FASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA----EWHSPLYLVIDD 129 F + A+ H + + + S + + FI++ E P+YL IDD Sbjct: 86 FFNIFSHALVH----HNIADKQLINRSNSISANTDYDSFFIDIVGILHEVKHPIYLFIDD 141 Query: 130 YHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQ 189 +H +++ VI +++ P+ L L++ SR P+L IANL Q+ + + + Sbjct: 142 FHFLSDKVILHFFNQILQYAPQQLQLIISSRIQPRLEIANLLASGQMQMLQPEHFKLSID 201 Query: 190 EAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINAS 249 EA Q + + S +E + D GW A+QLIA+ +Q+ A S L + Sbjct: 202 EAFQLYSDQFSQ----SEITAFHDKTEGWVVAMQLIAIFHQQHPELALTS---LLNQSID 254 Query: 250 HLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQ 309 L Y+ +++ +D +HFLL +++L + + V +N + +I + Sbjct: 255 ILDLYMSEQIYHKLDANVQHFLLHTSLLDRFDPLIANYVCEIDNSTQLMSQIIPFSSLVI 314 Query: 310 RMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQGFPSEAIHHALAAG 368 +D +F YH LF +FL+QR E+ + E+ AA+ + + EA++ + A Sbjct: 315 PIDSQQGFFRYHHLFADFLKQRLLQEVGEQTCRELRCKAAKYYANNDYFEEAVNQYIRAN 374 Query: 369 ---DALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM------ 419 A+ L I W L + +E L + +P L L+Q +L Sbjct: 375 HIESAIAL--IASAGGWELILTRGIGYVESLLSQFNRTQITNSPTLGLIQCYLYLKLGEV 432 Query: 420 -QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQV--AINDGNPDEAERLAKLAL 476 Q+ + Y TL E++ +D + +F+ ++ + ++ G + L Sbjct: 433 NQASNSYELAYTLFK--EYQQQDKPSSSRSRDFSIIKMLIDLYLDRGTDNRLINTLTELL 490 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 E L R V + LG + + G + + + Q + + W +++ Q + Sbjct: 491 ETLEESDHLGRGVVLAGLGLIHNQLGRFEEAHSAALTSHQQMQLANCWVGINYNIFHQGQ 550 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 L +G L A E ++A ++ E + ++A + + ++++AE SG Sbjct: 551 SLAYRGRLNEALELFKRASKMAKEHLGLDSGLQSMASCLKADIHYQVYQIEKAEELLASG 610 Query: 597 IEVLSSYQPQQQLQCLAM--------------LIQCSLARGDLDNARSQLNRLENLLG-- 640 I+VL S + ++ L Q L RG L QL RLE LL Sbjct: 611 IKVLESKDCWHDIYAVSFKLAINIAIARDDHNLCQHYLQRGYLVAQIRQLERLEKLLDVL 670 Query: 641 ----NGKY-HSDWIS--NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 693 K+ H D + N+ +R YW+ W + NH+L N Sbjct: 671 SLKVTDKFCHLDKFNQLNSQIIRENYWE-----TPQPMWFVISEYYYVIANHYLSRNMSN 725 Query: 694 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 753 A L + ++ E N+ ++ + + L+Q + G + A R++ Sbjct: 726 QA-----LSYSQKLSLLALENNQKIDQVKALG-----IQCLSQ--FSTGNEKKAFRLVTQ 773 Query: 754 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHH-RHKFAH 812 L+LA++ G F EL H + +L ++N H ++ + Sbjct: 774 MLELASQVGCKQVFF--------------------ELPNH-IEALLLKLNLHSDENQLSS 812 Query: 813 FDENFVERLLNHPEVPELIRTSP--LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTH 870 + L++ + + +P L+ RE Q+ L+ G++N+QI+ L ++ T+K H Sbjct: 813 EGNRLLTWLISELKKSHQAQNNPWHLSSREQQICPLLSQGFTNKQISTTLGISENTVKFH 872 Query: 871 IRNLYQKLGVAHRQDAV 887 ++NL+QKLGV +RQ AV Sbjct: 873 LKNLFQKLGVINRQQAV 889 >UniRef50_A4A4M2 Transcriptional regulator malT n=1 Tax=Congregibacter litoralis KT71 RepID=A4A4M2_9GAMM Length = 888 Score = 169 bits (427), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 141/500 (28%), Positives = 243/500 (48%), Gaps = 34/500 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 +I SKLS P V+R+ +LA+L ++ +PAGYGKT +++ W A + Sbjct: 5 IIDSKLSPPSPNRGHVIRKSVLARLDSCIGGGACVLHAPAGYGKTAVLNDWRSSLTARRI 64 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGH----CAICETMAQKRQYASLTSLFAQLF 113 + W SLDE D F +Y+++A ++A +G +I + + A+L+ L Sbjct: 65 PVLWLSLDEHDRSLNTFLAYVLSAYRKAISGEEPRSPSIFDLSSLSDDEATLSVLST--- 121 Query: 114 IELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQ-LGIANLRV 172 L++ H+P +V DD+H + + + +R Q NLTLV +R P LG A+LRV Sbjct: 122 --LSQLHTPHIIVFDDFHRAASKEVQQLVRRLAHAQIRNLTLVFSTREFPDYLGFADLRV 179 Query: 173 RDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRIC------DDVSGWATALQLIA 226 LLE+ ++L F +E + S + ++ RI + GW A+ A Sbjct: 180 AGDLLELSHRELGFDVEEVIALY-----SHADDEKNERISWLKQLHERTEGWPVAIG-SA 233 Query: 227 LSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALIT 286 L R SA +RL+G + S LSDY +++V ++ ++FL+ +AIL +N + Sbjct: 234 LRWRSQGASAKDVLKRLSGRD-SELSDYFLEQVFLDLPSDLQNFLMVTAILDRVNGDVSK 292 Query: 287 RVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRA 346 + + +G + +ER+G+FL+R D+ G W+ YH L+ FL +R + + +HR Sbjct: 293 VLCPKLDGWETIRILERKGVFLERADNEGNWYRYHRLYREFLVERLRRSSSLSSDTLHRM 352 Query: 347 AAESWMAQGFPSEAIHHALAAGDALMLRDILLN-HAWSLFNHSELSLLEESLKALPWDSL 405 AA + G +EA+ H +A D +L + W +++L++ LK L D L Sbjct: 353 AATWFQENGLLNEAVFHTMAVNDVRKCAQLLESLGGWQYALQGDIALVQAVLKQLSIDDL 412 Query: 406 LENPQLVLLQAWLM--QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG 463 + P+L L + ++ HR GE + E K ++++ E + V Sbjct: 413 ADYPRLWLARVYMSVRVGHHRAGEEDLKRFLGFQEQKADTDNSIEPETALIETLVQRYTD 472 Query: 464 NP---DEAERLAKLALEELP 480 P D +R+ +LA ++LP Sbjct: 473 RPVTRDGIDRIERLA-DQLP 491 >UniRef50_UPI0001789493 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789493 Length = 873 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 124/398 (31%), Positives = 198/398 (49%), Gaps = 9/398 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-IG 60 ++ K+S P +H + R+RLL ++ + +L I +PAGYGK+TL++QWA ++ Sbjct: 9 ILKMKISLPGLKEHLIRRDRLLQDMAAGHKGQLTTIIAPAGYGKSTLLAQWAHETDERSA 68 Query: 61 WYSLDEGDNQQERFASYLIAAVQQA-TNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLDE DN RF Y+ A++ A Q AS+ + L EL E Sbjct: 69 WVSLDERDNDPVRFWRYVAASLASILPEAQGARLMHHTQLLPSASIETFLDTLISELYED 128 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRN-LPQLGIANLRVRDQLLE 178 PL L+++D H I + IH + + I + PE++ L++ SR LP I + V ++ Sbjct: 129 SEPLNLILEDLHSIHSSTIHGGISYLIDYLPEHIHLLISSRTELPFPTIKGV-VNHEVYL 187 Query: 179 IGSQQLAFTHQEAKQFFDCRLS---SPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 IG +QL FT++E ++ F + S + + E + + GW T LQL ++ R T S Sbjct: 188 IGMKQLEFTYEETERLFRHASNGGHSNLTSMELDTLRNQTEGWVTGLQLAVITMR--TGS 245 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + N +S YL EV+ + FLL++A+L ++ + VT + + Sbjct: 246 GLEGFVDDMKGNPLLVSKYLFQEVVSKLSPDVFSFLLQTAVLSELHPQVCDAVTDLSDSR 305 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 LEE+++ LFL +D+ +F YH LF FL Q E E + HR A + + + G Sbjct: 306 PMLEELQKLNLFLVPLDEHQTFFRYHHLFSQFLLDLLQREFDGEYTKRHRLAGQYYASVG 365 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLL 393 EAI H LAA D ++L H S+ E++ L Sbjct: 366 SMDEAIDHMLAAQDFGHAVNLLEQHMQSVLELGEIATL 403 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 13/158 (8%) Query: 740 QAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLR----QLIQLNTLPELEQHRA 795 Q G++ + +L +AL++ + G++ F+ EGE M Q L+ +L Q + L LE+ R Sbjct: 720 QRGQRQQSLHLLGEALRVGAQNGYVRTFLDEGEDMCQLLQLYSSRLGQEDGL-SLEELRT 778 Query: 796 QRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQ 855 R + + +F + E + + E P+ L + E +L LI G +N+Q Sbjct: 779 LEYARTLVK----RFPGYSEADI----SSAETPQQTLPERLNRNEMNLLHLIRQGAANKQ 830 Query: 856 IAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 +A L ++ TI+ ++ LY KLGV R A+ AQ L Sbjct: 831 MAAALGLSEGTIRVYLSRLYGKLGVTTRTQALVKAQSL 868 >UniRef50_Q21QQ8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QQ8_RHOFD Length = 894 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 124/462 (26%), Positives = 217/462 (46%), Gaps = 14/462 (3%) Query: 19 RERLLAKLSGANNFRLALITSPAGYGKTTL----ISQWAAGKNDIGWYSLDEGDNQQERF 74 R RL + A+ RL +T+P G+GKTTL + W A + W SL++ D++ RF Sbjct: 26 RARLDVVRAAASFARLVTLTAPGGFGKTTLAAAWTTHWLASGHHCAWLSLEQDDDEPVRF 85 Query: 75 ASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLIT 134 L AV + G + Q A+ ++ + L +L + +++V+DDY I Sbjct: 86 MHGLTHAVDRLGPGVGQSALALLQGSVLAAPRAVVSLLVNDLEKVQGEVFVVLDDYQWIH 145 Query: 135 NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQF 194 + IH++M F + H P + LV+ SR+ P L ++ LR + L + + + F +E F Sbjct: 146 DSAIHDAMAFLVSHVPSTVHLVITSRDAPPLMLSRLRAHGEWLNVDANAMRFDAKETDHF 205 Query: 195 FDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDY 254 + P AA+ +++ GWA AL++ AL + AS + Sbjct: 206 LRTACAQPPTAAQIAQLYASTGGWAAALRIAALG------PGGAGVLEASASGASRAFTH 259 Query: 255 LVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDT 314 L++++L ++ + T F+ ++A+L +N L VT +E+ L+++E+ ++ +D Sbjct: 260 LIEDLLASIPVDTVRFMAQTAVLEHLNVDLCNAVTAQEDSAELLDQLEQVNQLVEPLDSE 319 Query: 315 GEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLR 374 G W Y L ++L L + ++H AA+ + Q ++A+ HALAAGD Sbjct: 320 GRWLRYPQLLRDYLLGPLTQRLKIDQLQLHGRAAQWFARQSAWTDAVRHALAAGDGTQAI 379 Query: 375 DILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR 434 + +++ +L +L L + P + L P + L AW + RY + LLA Sbjct: 380 EWMVHCCMALVKTGDLMTLVGWRRQFPAELLRSQPSVQLAVAWGLTLAMRYEDAVPLLAE 439 Query: 435 AEHEIKDIREDTMHAEFNALRAQV-AINDGNPDEAERLAKLA 475 E I T HA+ A V A+ G D++ R +LA Sbjct: 440 IERANPLI---TGHADAQAQCLAVHAVAAGLQDDSARAGELA 478 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 39/52 (75%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 LT+RE VL L+ SG SN+++A + ++A T+KTH+++++ KLGV R+ AV Sbjct: 832 LTERERDVLMLVASGQSNKEVARSMNISAETVKTHLKSIFGKLGVQQREQAV 883 >UniRef50_A2SE70 ATP-dependent transcriptional regulator-like protein protein n=2 Tax=Methylibium petroleiphilum PM1 RepID=A2SE70_METPP Length = 933 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 126/442 (28%), Positives = 201/442 (45%), Gaps = 30/442 (6%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGW---- 61 KL P V R+ +L ++ ++ R+ ++ PAG+GK+T + Q GW Sbjct: 44 KLFTPPVYPGAVPRQAILDRVLQDDSLRVTVLQGPAGHGKSTTLQQIKTAHEARGWRTAW 103 Query: 62 YSLDEGDNQQERFASYLIAAVQ----QATNGHCAICETMAQKRQYAS--LTSLFAQLFIE 115 +LD+ DN RF S+L+A + +A + + T R A L +L ++ Sbjct: 104 LTLDDADNDPRRFESHLVAVMSLLHGRAASPGASRSGTGDAPRDLADWMLDTLSGRI--- 160 Query: 116 LAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQ 175 +P + ID++ + N + R + P N+ + + SR LP++G+A L V Sbjct: 161 -----TPASIFIDEFQALRNEALLRFFRSVLARLPANVHVFIGSRTLPEIGLATLMVNRV 215 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALS-----AR 230 + + L FT E QFF S + A E I GW +QL L+ R Sbjct: 216 ASVVRADDLRFTPGEVTQFFADSASLQVSAGEVDAIYRRTEGWPAGVQLFRLALVSPEVR 275 Query: 231 QNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG 290 A R L++YL D V+ + FLLK+++L+ ++ L T VTG Sbjct: 276 MALDGADDHGPR-------ELAEYLADNVMSLQSPRMQEFLLKTSLLQRLSAPLCTAVTG 328 Query: 291 EENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES 350 E+ Q L +ER GLFL+ +D WF YH LF +L + Q L ++H+ AA+ Sbjct: 329 FEDAQELLVRLERSGLFLRALDSDNRWFRYHGLFSTYLAETLQRNGPEALRQVHKKAAQW 388 Query: 351 WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ 410 +A P EAIHHAL + + L + + L +EL LE LP+ + + P Sbjct: 389 CLAHELPEEAIHHALCCRNFPLAASTLTDWSSQLVAGAELITLERWHDRLPFHEVAQRPA 448 Query: 411 LVLLQAWLMQSQHRYGEVNTLL 432 LV+ A+ + R ++ LL Sbjct: 449 LVIRAAYALMFLRRRPKLRPLL 470 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 27/181 (14%) Query: 722 RLMSDLNRNLL--LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLR 779 R+ D+ ++L LL Q + G ++ A R L AL+L R ++ + EG+ + + LR Sbjct: 767 RVYRDIKLSVLETLLQQ---RMGARNAAHRCLRKALQLGRRGRYVRCLLDEGDGVIELLR 823 Query: 780 QLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR------- 832 + Q +LR ++ D +++E LL +L R Sbjct: 824 EAYQ-------------NLLRG-HEPGGGTGTDPDRDYIELLLEASGT-DLGRQAAGNAL 868 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 T L++RE ++L + G +N +IAG L V+ T+K H++N+Y KLGV +R A+ A+ Sbjct: 869 TEALSEREKEMLRFLLDGTTNREIAGRLFVSENTVKFHLKNIYSKLGVGNRLQAINTARA 928 Query: 893 L 893 L Sbjct: 929 L 929 >UniRef50_B2TCN8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2TCN8_BURPP Length = 900 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 131/442 (29%), Positives = 204/442 (46%), Gaps = 17/442 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKN 57 L+ +K S P + R LLA+L + RLAL+T AGYGKTTL++QW Sbjct: 9 LVSTKFSPPRIGAKYITRVDLLAQLQRKRHCRLALVTGSAGYGKTTLLAQWRKVCLKASA 68 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 ++ W +L D F++ L AA+Q+ G + + A++ + A + Sbjct: 69 EVAWLALTADDKSYADFSTALFAAMQRI--GISVATDLSLEVASAAAMDAAIAAIVEAAV 126 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 LYL+IDDY + P+ H+ M+ + P NL V+ SR P L ++ LR+ DQ++ Sbjct: 127 GLPKELYLMIDDYQYVEAPLAHKFMQKLVDQGPGNLHFVIGSRLTPPLSLSRLRMMDQIV 186 Query: 178 EIGSQQLAFTHQEAKQFFDCRLS-SPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 E+ S L F E + F D L I A E + I + GW + +QLI + R Sbjct: 187 ELDSDGLPFDLAETRSFVDENLGPGKINADELTLIHELTGGWPSCIQLIIIMLRNR---- 242 Query: 237 HKSARRLAGI---NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 AR G +S L YL +EV+ + F + +I R + L VTG E+ Sbjct: 243 -PDARATLGDLIWRSSDLQAYLSEEVMAQLPAELSEFAVALSIFRRFSAPLAREVTGNEH 301 Query: 294 GQMRLEEIERQGLFLQRM--DDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW 351 LE +E + L + R+ DD W+ +HPLFG FL R + E+HR A+ + Sbjct: 302 AADLLERMEDENLLITRVDSDDRTAWYRFHPLFGEFLATRLARREGDAVRELHRRASRWF 361 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 A G +EA+ HA A D ++ A + ++ L L+ LP +LL + +L Sbjct: 362 AAHGLLAEAVRHASAGEDVEFAASVIERAAPATWSVEYLGPTLHLLERLPEQTLLSHQRL 421 Query: 412 VLLQAWLMQSQHRYGEVNTLLA 433 + + + R + LA Sbjct: 422 LFIACLTVALTTRPAKAKAWLA 443 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 11/144 (7%) Query: 745 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQ 804 SDAQ + A++ A R G + FV EG A + L ++++ L A +L Sbjct: 757 SDAQACFVRAVEAAQRLGLVRTFVDEGAAAGRLLAKVVREGKLEGATLQYATGLL----- 811 Query: 805 HHRHKFAHFDENFVERLLNHPEVPELIRTSP-LTQREWQVLGLIYSGYSNEQIAGELEVA 863 KF D E L + + P LTQRE ++L L+ SN++IA L++ Sbjct: 812 ---EKFP--DSAISEGLAGNARRAGASKLQPVLTQRELEILSLVGQAMSNKRIALALDIT 866 Query: 864 ATTIKTHIRNLYQKLGVAHRQDAV 887 T+K ++RN++ KLGV+ R DA+ Sbjct: 867 IETVKWNLRNIFSKLGVSSRYDAM 890 >UniRef50_A3I8R1 Probable transcriptional regulator, luxR family protein n=1 Tax=Bacillus sp. B14905 RepID=A3I8R1_9BACI Length = 830 Score = 166 bits (420), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 96/329 (29%), Positives = 170/329 (51%), Gaps = 9/329 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI-G 60 L+ SK++ P + R +L + +L ++ +PAGYGKT++++ W K + Sbjct: 5 LLSSKITMPHHSPTLIERTQLFDLFDQHIHVKLTILRAPAGYGKTSILTSWLKNKKETTA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHC-AICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLD DN R+ +Y++ A+ +++ I + + A+L L E+ Sbjct: 65 WVSLDAADNDPIRYWTYILHAIARSSKSEIDQILAPLLNSQDPATLEFFIYSLLEEMNAI 124 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 P+ +V+DDYH+I NPVIH+ M F+ + P + + + SR++P L IA RV+ + EI Sbjct: 125 QQPISIVLDDYHVIENPVIHQLMTQFVEYLPSHAHIYMSSRSVPALPIAKWRVKQWIHEI 184 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 S L FT QE K+FF C+ + + I D GW L L + + + + ++ Sbjct: 185 HSGHLRFTLQEVKRFFSCKHLPALNHQQLQAILDKTEGWVAGLLLTSFAHDPDIEALEEA 244 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A+ +S++L E++ N+ T+ FLL++++L+ ++ A+ ++T + N +LE Sbjct: 245 AQPF-------ISEFLWQEIIHNLPSETQQFLLRTSLLQELDPAICDQLTKQTNSLEQLE 297 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFL 328 +E +GLF R+ F YH L L Sbjct: 298 HLEAKGLFTIRLQSKQPIFRYHHLLAEAL 326 Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%) Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 S LTQRE + L+ G +N +IA L ++ T++ ++ +Y KLGV R A+ Sbjct: 772 SMLTQREKDIYDLLVDGITNREIAKRLHLSEGTVRVYLSTIYSKLGVNSRAKAI 825 >UniRef50_C6PN74 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN74_9CLOT Length = 882 Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 106/431 (24%), Positives = 209/431 (48%), Gaps = 15/431 (3%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK---NDIG 60 +K P + ++RE++L KL A N +L +I++PAG GKTT + W + N+I Sbjct: 9 KTKFVIPKKKCKIILREKVLKKLDEALNTKLTIISAPAGSGKTTSVISWIYSRKLENNII 68 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLDE D++ + F S I A+++ + + + Q + S+ + ++ + Sbjct: 69 WISLDERDDKLDVFWSSFITAIEKFKDSKDE--KNNFEDNQEIPIESIVDVVLNSISSIN 126 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 L VIDD+H + + I ++ FI +N+ +++ SR+ + ++ LR+ ++ E+ Sbjct: 127 DNLVFVIDDFHFVKDKDILMEIKHFIDGIFDNVHIIITSRSKTNINVSKLRLDGEVTEVD 186 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALS--ARQNTHSAHK 238 + L F+ +E +F + + I R+ + GW +Q+ ALS R++ + Sbjct: 187 MRDLNFSLKETTEFLNENMEIRISKESIKRLNEATEGWIAGIQIAALSMNGRKDISEIEE 246 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + +G N ++ DY +E+L + + FLLK+ IL +N L V ++N Q L Sbjct: 247 ---KFSG-NNEYIQDYFCEEILSDKSEEIKEFLLKTCILDELNADLCNAVICKKNSQQIL 302 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 EE+ +F+ ++D G++F YH LF FL + E+ E+ AA + G + Sbjct: 303 EELCDMNMFIDKLDYDGKYFRYHKLFREFLMSKLNGINKEEVSEVSNRAASWYEKNGCVN 362 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 A++ + + ++ + +E + LK++P D +++NP+ ++ Sbjct: 363 SAVNQYIHVENYEQAIKLIEDKCVKKIFTNEYFYVLGWLKSMPQDIIIKNPRFCMVH--- 419 Query: 419 MQSQHRYGEVN 429 + Y ++N Sbjct: 420 -MCTYIYDDIN 429 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 24/166 (14%) Query: 729 RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLP 788 R ++ +++ Q + +A R L +AL + GFI F+ Sbjct: 737 RAYIMRAEIFSQNDQYENATRDLREALIIGFENGFIRIFL-------------------- 776 Query: 789 ELEQHRAQRIL-REINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLI 847 L+Q +A +IL + I +K + ++ ++L+ E + +++RE +VL LI Sbjct: 777 -LKQVKANKILLKTIKSMKFNKDYYKMGEYLNKILSLYSTEE--NSEIISKREKEVLMLI 833 Query: 848 YSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 SG N +IA L + +T K+HI N++ KLGV +R AV A+++ Sbjct: 834 ESGAKNSEIAKALFITESTTKSHILNIFSKLGVRNRIQAVAKAKEI 879 >UniRef50_Q1NHC1 Regulatory protein, LuxR n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHC1_9SPHN Length = 893 Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 230/933 (24%), Positives = 385/933 (41%), Gaps = 87/933 (9%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKN 57 ++P+ + P + R L+A R+ ++++PAG GKTT + WA A Sbjct: 3 VVPTAILPPRSTHMPIRRAALVALTERVAQSRMTVVSAPAGSGKTTAMLFWADELRAQGR 62 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W + G + F L AA A A+ A + ++L ++ + Sbjct: 63 PVLWLAARAGIESKRSFLQALKAAGIAAGMPWDALDSDAADESWLSALATMGSV------ 116 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 P+ +++DD + P++ E + + LT+++ +R L +A +R L+ Sbjct: 117 ---KPV-IIVDDAQFLAKPIL-EFLAQLSSSARDALTIIIAARGTVGLSLARMRALGFLV 171 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+G L+FT EA + + +P+++ E I D GW + + + R+ + SA Sbjct: 172 EVGVADLSFTLAEATELVTRSIGTPVDSRELQDIVGDTQGWVSGIVIACDLYRRTSDSAA 231 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 K RL G+ ++Y DEVL R FL+ ++IL + + V G+EN + Sbjct: 232 KL--RLTGLR-PEFAEYFHDEVLSLQPDDVRRFLVDTSILDELTPSACAAVIGDENARAM 288 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L+ + R+GLFL +D + YH LF + R +HR A+E + G Sbjct: 289 LDHVFREGLFLNAIDQEHSRYAYHRLFREMVLGRLIDRAPDRAAVMHRRASEYFAEAGQL 348 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 + AI HA +GD L D L A L L ++E LPW L E P L+L AW Sbjct: 349 ALAIEHARLSGDKAFLADQLDRLAEGLTYSGYLYRIDELGAELPWPILAERPNLLLALAW 408 Query: 418 LMQSQHRYGEVNTLLARAE--------------HEIKDIREDTMHAEFNALRAQVAINDG 463 Q + + L++ A HEI+ + H F L A A +D Sbjct: 409 RRIRQLAFSSADRLISAARQACEAKREAQSLPAHEIEQLDLLIRH-RFVMLAA--ARDDM 465 Query: 464 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 523 EA+ ++ L EL Y ++ ++L +++ + EL +++ + +R Sbjct: 466 VRVEAD--SEPLLAELADSHAY---LSCTLLAQLMSARRELYHFQDMLKLEAETSRALSR 520 Query: 524 WHYALWSLIQQSEI---LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 580 A S+ ++ + + AQG + A E+AF L E H + A+LL Sbjct: 521 PGSAFASIALKASVAPTMMAQGKIPLARRFLEEAFALAVEIHGAGSGLAALPALPLAELL 580 Query: 581 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL--ARGDLDNARSQLNRLENL 638 + L++A A + V+ + Q+ L+ L ARGDL +A S LN + Sbjct: 581 YDAGDLEQAAELADQYLPVVRQWGFSDQMAS-GYLVSARLRAARGDLPSALSTLNDAHLV 639 Query: 639 ---LGNGKYHSDWISNANKVRVIYWQMTGDKA-----AAANWLRHTAKPEF---ANNHFL 687 G + S + A +VR++ D+A A L P N + Sbjct: 640 AIECGLDRLRSFIV--AEEVRLLIKAGQIDEAEQHFLAGDPQLDGEPIPTLHPTRRNENI 697 Query: 688 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 747 W I + LG E + A ++R LLL ++ G +S+A Sbjct: 698 AIAWLRIEMQRHRLGRARKVAYRWLEFVKRAGAVRSAVIFE---LLLAEIAVLQGNRSEA 754 Query: 748 QRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHR 807 +R + A+++A ++ FV EGE +A + + PELE A R Sbjct: 755 RRAVRAAVEMAEPAAWVRVFVDEGEVIASLIIEAYSQG--PELETP-ADR---------- 801 Query: 808 HKFAHFDENFVERLLNHPEVPELIR-------TSPLTQREWQVLGLIYSGYSNEQIAGEL 860 F V L P++ T L RE +L ++ G N +I L Sbjct: 802 -----FAVRLVSMLRRGPQIEADEEEEDDFGLTGRLANREVDILTMVSGGLRNREIGDRL 856 Query: 861 EVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 + T+K +++ +Y KLGV R AV A+QL Sbjct: 857 GLTEGTVKWYMQQIYDKLGVRRRPQAVLRARQL 889 >UniRef50_A7HS86 Regulatory protein LuxR n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HS86_PARL1 Length = 921 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 234/914 (25%), Positives = 389/914 (42%), Gaps = 67/914 (7%) Query: 14 DHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK----NDIGWYSLDEGDN 69 ++ V+R+ L +L RL ++ +PAG+GKTTL+ Q+ A + + + W L+ Sbjct: 37 NNLVLRKHQLDRLKNHTGVRLIVVQAPAGFGKTTLLRQYCAWREAQGSRVAWLHLEAHYA 96 Query: 70 QQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS-PLYLVID 128 RF + AV A E + +S Q F+ + + +V+D Sbjct: 97 DPSRFLRLVCEAVAGA-------IEEESPSAALPDNSSASIQDFLRVVRGTDVGIVVVVD 149 Query: 129 DYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTH 188 ++ + + + +R P+N+ L + +R +P + + L++R+Q + + + L F Sbjct: 150 NFEQAAHSGMEAVIAQLVRVLPQNVQLCIGTRVIPAINLPRLQLREQAVVVNVEGLRFRA 209 Query: 189 QEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINA 248 E +FF R I E + GW ALQ I LS R T A ++G+ Sbjct: 210 NETTEFF--REFRDISEEELDKYQVATDGWPAALQCIRLSMRGRTGRAKPLP--ISGVTP 265 Query: 249 SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFL 308 L D+L +V +N+ + LL + + + L+ ++G +G+ L EIE GLFL Sbjct: 266 D-LIDFLATDVFENLSGDIQRALLDACMPERICPELLESISGRPDGEGSLGEIEHLGLFL 324 Query: 309 QRMDDTGEWFCYHPLFGNFLRQRCQWELA-AELPEIHRAAAESWMAQGFPSEAIHHALAA 367 +D WF +H +F L R + EL+ AE+ HR AE + A GF EAI H + A Sbjct: 325 TPVDMDHRWFRFHTVFRQVLLTRLRRELSEAEILARHRKIAEWYAAHGFSEEAILHYIEA 384 Query: 368 GDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR-YG 426 D +L L N L L+ L D +++N + +L A + R + Sbjct: 385 TDQEAAAALLNAIIGRLVNEERLDLIVRYTDRLSPD-VIQNYEHILNAAIVAYGFRREFI 443 Query: 427 EVNTLLA--RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP--PG 482 + N ++A RA E ++ ++ A D E R A+LAL+ L PG Sbjct: 444 KANRIIALRRAALERENASKEAWGVHHYTRIFTTAAQD-QVVEIGRTAQLALDHLADAPG 502 Query: 483 WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 542 Y+ + L+ K E R AL Q H+++ + I + +L QG Sbjct: 503 LEYAVALNARAYWLYLNSKFEEARE-ALAQARALHDEAHNLFGLSYCEWIY-ANVLSTQG 560 Query: 543 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 602 + A ++ ++A +E + + A+ L+ + EAE L Sbjct: 561 RNEEALKSLKQAQIHNDEGATASVTAGSVIAACLAETLYEKNCIAEAEMLLHD---HLLL 617 Query: 603 YQPQQQLQCLAM----LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 658 + Q ++ LA+ + + ++ RG+ A L+R+ LG+ + A V Sbjct: 618 LEQQAIVEPLALAFLTMARVAMLRGEEREAEEVLDRM-MYLGHRYNLRRLVIYAKAELVR 676 Query: 659 YWQMTGDKAAAANWLRHTAKPEFANNHFL-------QGQWRNIARAQILLGEFEPAEIVL 711 + GD A + E L + Q AR IL G A +L Sbjct: 677 QATLAGDLDKARTRFASMGQGENDGEDDLVYFAGETEAQTITEARLLILAGRHADARALL 736 Query: 712 EELNENARSLRLMSD-LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 770 + ARS R M L NLLL L + G+ + A+R L++AL++ FI + E Sbjct: 737 QPAARKARSQRRMRRFLKLNLLLAISLNVE-GQVNSARRALIEALQVGAPDQFIRLILDE 795 Query: 771 GEAMAQQLRQL----IQLNTLPELEQHRA-----QRILREINQHHRHKF--AHFDENFVE 819 G Q LR L L P+L Q + R+L E + A DEN Sbjct: 796 G---PQALRLLHEARAALPKFPDLPQKDSVSAYLDRLLSEAGEFAPALMPDAGHDEN--- 849 Query: 820 RLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 P L+ LT RE ++L L+ +G+SN+ +A L ++ T+K H+RN+++KL Sbjct: 850 ----DDISPHLL--EELTDREREILRLVSNGFSNKALADRLSLSTNTVKWHLRNIFEKLQ 903 Query: 880 VAHRQDAVQHAQQL 893 + +R AV A+ Sbjct: 904 IGNRMQAVSVARHF 917 >UniRef50_Q4ZXS3 Regulatory protein, LuxR n=22 Tax=Pseudomonas RepID=Q4ZXS3_PSEU2 Length = 920 Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 148/533 (27%), Positives = 236/533 (44%), Gaps = 26/533 (4%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI---GW 61 + RP + V R RL +L RL L+ +PAG+GK++L ++ G D W Sbjct: 31 GRFFRPPLPEGYVPRARLCQRLDAGLGGRLLLVCAPAGFGKSSLAVEFCQGLPDNWQNVW 90 Query: 62 YSLDEGDNQQERFASYLIAAVQQ-----ATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 L D+ RF L+A++QQ T + M Q+ Q + L EL Sbjct: 91 LGLSARDSDPGRFLERLLASLQQFFPQLGTQAMALL--KMRQRHQPFAFEEWLDGLLDEL 148 Query: 117 AE---WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 A PL LV+DDYHL PV+ ++F + H P L ++V SR P +A LR+ Sbjct: 149 AMHLMLSKPLLLVLDDYHLAQGPVLDRCLQFLLNHLPAGLVVMVTSRQRPDWHLARLRLT 208 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ-N 232 QLLEI Q L TH E+ + R S +++ + GW L+ L+A + Sbjct: 209 RQLLEINEQDLRLTHAESMAVLE-RHSGSLDSEALQSLIQRSEGWVAGLRFWLLAASEAG 267 Query: 233 THSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEE 292 SA R + + + +YL++EV+D + + FL +A L L Sbjct: 268 DESALPQTLRGSEV---LIREYLLEEVIDCLPADVQAFLYDTACLERFCAELCDAARDGH 324 Query: 293 NGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELP-EIHRAAAESW 351 + L ++ +FL +D+ G WF YH LF + LR R + A P +H A + Sbjct: 325 DSAGMLGYLQAHQVFLVPLDEQGHWFRYHHLFSDLLRAR---QAAGAPPTRLHLNACRWF 381 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQ 410 AQG EA+ AL AG + +++ N + L + +L LP D L P+ Sbjct: 382 SAQGQLDEAVEQALRAGHLDVAANLVQNLSEEQLLAEQNVGMLLRWKMDLPDDLLTSTPR 441 Query: 411 LVLLQAWLMQSQHRYGEVNTL---LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDE 467 L++L AW + + L L+R + +M A++ AL +A G+ ++ Sbjct: 442 LIVLYAWALGLACQLDAAEELANQLSRFLPAPSATAQKSMLAQWLALSGIIARGRGDSEK 501 Query: 468 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 520 + AL LP + R+V S L + G+L R+ L + ++A++ Sbjct: 502 TQHYCTEALLSLPEKRYGQRLVCLSTLANLAVANGDLWRARVLNRDALELAQR 554 Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 8/76 (10%) Query: 826 EVPELIRTSP--------LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQK 877 ++P SP L+ RE VL LI G SN++I+ +L ++ T+KTH ++ K Sbjct: 841 KLPACCTPSPEAAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSK 900 Query: 878 LGVAHRQDAVQHAQQL 893 LGV R AV A+ L Sbjct: 901 LGVERRTQAVARAKTL 916 >UniRef50_UPI000178942B ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178942B Length = 865 Score = 161 bits (408), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 116/406 (28%), Positives = 197/406 (48%), Gaps = 6/406 (1%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA--AGKND 58 +++ +KL P D + R + + + +R+ I +PAG GKTT + Q+ G++ Sbjct: 6 VILRTKLQPPALRDSWISRSVWDVRENQGSGYRIITIVAPAGSGKTTALVQYMHHEGQHR 65 Query: 59 IG-WYSLDEGDNQQERFASYLI-AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W +LDE DN RF Y+I + + +G + + S Q +E+ Sbjct: 66 LASWLTLDEQDNDLRRFWRYMIHSLLPNLPSGIENRLLPLLVPYSGQVIYSFLDQFIMEM 125 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSR-NLPQLGIANLRVRDQ 175 + +V+DDYH IT+ IHES+ ++I H P+++ + + SR LP G+ + + Sbjct: 126 HGISLSINVVLDDYHSITHQEIHESLNYWIEHLPDSVRVFIASRAELPLEGMGRWLLSGR 185 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 L IG+Q+LAF ++A L + + + + GWA LQL ++ RQN + Sbjct: 186 LQRIGAQELAFNEEDAGSLCQHTLGRSLAPEKLNSLVRRTEGWAAGLQLALIAQRQNEAA 245 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + + N LSDYL EV+ +D R FLL+++++R + + VT Sbjct: 246 GIPGSDAFSQSN-RQLSDYLSHEVMRGLDKPLRQFLLETSVMRRFHADICAAVTELPQCD 304 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 LE ++ +GLFL +D W YH +FG+FL + + E++R A++ + +G Sbjct: 305 GMLEVLKAKGLFLIPLDHQERWHRYHHVFGDFLSSLLKQQNPERWIELNRRASQVYAREG 364 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALP 401 + EAI +AL A D M ++ H L E LL+ L P Sbjct: 365 WHEEAIDYALLAEDYEMAAALVDQHMMELIKKGEFDLLQLWLNRFP 410 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 21/150 (14%) Query: 742 GRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQ----LNTLPELEQHRAQR 797 G A L +AL L + F+ EG + Q L++L + T P L+ + A+ Sbjct: 720 GNVKVATLFLQEALSLVMPYRYKRTFMDEGNWVYQLLQELNTNGDAMKTAP-LKDYMAE- 777 Query: 798 ILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIA 857 ++ E+ Q K A D LL+H T LT +E VL L++ G +N+ IA Sbjct: 778 LMEEMRQE---KLASLD------LLDH------FGTYGLTPQETTVLALLHRGDTNQSIA 822 Query: 858 GELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 EL + T+K ++ +Y KLGV+ R AV Sbjct: 823 DELGLTVGTVKVYLNRIYSKLGVSSRVQAV 852 >UniRef50_P95078 Probable serine/threonine-protein kinase pknK n=18 Tax=Corynebacterineae RepID=PKNK_MYCTU Length = 1110 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 146/495 (29%), Positives = 240/495 (48%), Gaps = 33/495 (6%) Query: 17 VVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKNDIGWYSLDEGDNQQE 72 V R RL L RL LI +P+G+GK+TL +QW + + W ++D DN + Sbjct: 346 VTRSRLTDILRAGGRRRLILIHAPSGFGKSTLAAQWREELSRDGAAVAWLTIDNDDNNEV 405 Query: 73 RFASYLIAAVQQA------TNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 F S+L+ ++++ + GH + E LTSL E+ E + +V Sbjct: 406 WFLSHLLESIRRVRPTLAESLGH--VLEEHGDDAGRYVLTSLID----EIHENDDRIAVV 459 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 IDD+H +++ ++ F + + +L L+V S + L + LR+ D+L EI S L F Sbjct: 460 IDDWHRVSDSRTQAALGFLLDNGCHHLQLIVTSWSRAGLPVGRLRIGDELAEIDSAALRF 519 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 EA + + A+ + GWA AL+L ALS + A + R L+G Sbjct: 520 DTDEAAALLNDAGGLRLPRADVQALTTSTDGWAAALRLAALSL-RGGGDATQLLRGLSGA 578 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 + + ++L + VLD ++ R FLL +++ L + + G NG+ LEE E +GL Sbjct: 579 S-DVIHEFLSENVLDTLEPELREFLLVASVTERTCGGLASALAGITNGRAMLEEAEHRGL 637 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ-GFPSEAIHHAL 365 FLQR +D WF +H +F +FL +R + + + E+HR A+ +W A+ G+ EA+ HAL Sbjct: 638 FLQRTEDDPNWFRFHQMFADFLHRRLERGGSHRVAELHRRAS-AWFAENGYLHEAVDHAL 696 Query: 366 AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW----LMQS 421 AAGD D++ +L S+++ L ++ LP ++ +L L AW L + Sbjct: 697 AAGDPARAVDLVEQDETNLPEQSKMTTLLAIVQKLPTSMVVSRARLQLAIAWANILLQRP 756 Query: 422 QHRYGEVN---TLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 G +N T L RA E+ + + + AE + LRA + D ER+ L E Sbjct: 757 APATGALNRFETALGRA--ELPEATQADLRAEADVLRAVAEV---FADRVERVDDLLAEA 811 Query: 479 LP-PGWFYSRIVATS 492 + P R+ T+ Sbjct: 812 MSRPDTLPPRVPGTA 826 >UniRef50_A4XVC9 Regulatory protein, LuxR n=11 Tax=Bacteria RepID=A4XVC9_PSEMY Length = 904 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 128/436 (29%), Positives = 209/436 (47%), Gaps = 9/436 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG- 60 L+ SKLS P + R ++ A L + RL L ++PAG+GKTT ++ A+ + G Sbjct: 12 LLRSKLSPPQAASDYLARPQVEAALLAHPHARLVLFSAPAGFGKTTALAMLASERRHAGA 71 Query: 61 ---WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 W SL GD++ RF LI A+ +A G + + ++ L ++LA Sbjct: 72 AVAWLSLGPGDDEPVRFFQQLIDALGRALPGLGEDALGYLRNTMRVPVEAVMESLLVDLA 131 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + PL LV+DD HLI + + ++ ++ P N TL + SR+ P L +A LR + QLL Sbjct: 132 QRQEPLLLVLDDLHLIQDAELLAALNRLVKLAPPNFTLAIGSRSQPPLSLATLRAKGQLL 191 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+GS++L +EA+ + + R ++ + + GW + L +L R Sbjct: 192 ELGSEELRLNPEEARSYLE-RSGLQLDGEAFAALYSHTEGWMIGMHLASLWLRHQPQPVQ 250 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + A G + + DYL+ V + + + LL + + ++ L +TG +GQ Sbjct: 251 QMAE--MGADQGAVGDYLLRSVFEQLPQERQELLLALGVAQQLSGDLANALTGRHDGQQL 308 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 LEE+E LFL +D +W+ +H LF FLR R + ++H A+ + Sbjct: 309 LEELEAMQLFLLPLDRERQWYRFHNLFAEFLRTRLRERDPERFKQLHFNASLWFTNHHMQ 368 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLEN-PQLVLLQA 416 + AI HA A DA ML +L L N +L L+ + +P D++ E P LVL+ Sbjct: 369 NLAIEHACLAEDAEMLAALLDGCGLELINRGQLHLIHSWRQHVP-DAIAERYPMLVLVDV 427 Query: 417 WLMQSQHRYGEVNTLL 432 W ++ E N LL Sbjct: 428 WSRAAELGLAEANRLL 443 Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 19/156 (12%) Query: 738 YWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQR 797 Y + G + AQ +L+ L A R S F+ EGEA+ Q L+QL P L+ Sbjct: 763 YQRLGYQERAQSLLVQCLIGAEREEARSLFIEEGEAIRQLLQQLESAERQPALQGFLRSL 822 Query: 798 ILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIA 857 ++ Q R +E LT+RE +V+ L G SNE+I Sbjct: 823 LVIWPGQESRQALDVLEEG-------------------LTEREREVVCLAAKGLSNEEIG 863 Query: 858 GELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 +L +A T+K H+ N+Y+KL V +R A++ A++L Sbjct: 864 QQLSLALGTVKWHLHNIYEKLKVRNRTQAIRRAREL 899 >UniRef50_Q0KDB0 Transcriptional regulator, LuxR-family n=1 Tax=Ralstonia eutropha H16 RepID=Q0KDB0_RALEH Length = 903 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 132/476 (27%), Positives = 228/476 (47%), Gaps = 14/476 (2%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGK 56 +LIP+K + P + R +LLA+L + + RL L+ AG+GKTTL++QW Sbjct: 13 LLIPTKFAPPRISPQSTPRAKLLARLLDSRDSRLTLVCGSAGFGKTTLLAQWRQQLLKDG 72 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W SL + +F +YL A+QQA ++ R + L A + + Sbjct: 73 ELVCWLSLSPDERHLPQFRAYLTGALQQAGLPVDDGTALASEVRADLPVAGLIATIVDAV 132 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + ++L IDDYH + + H ++ + H PE L L++ SR P L ++ R+ +L Sbjct: 133 CQRRQEVFLFIDDYHHVDDSDTHALIQGLVDHGPETLHLILASRTHPPLAVSRQRLTGEL 192 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVS-GWATALQLIALSARQNTHS 235 EI L F E + F L + + +R+ D++ GW LQ+I + +++ + Sbjct: 193 SEITFPDLPFDFAETQDFLAKHLGDVVP--DDARLIHDITDGWPVCLQMICIRLKRSPAN 250 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 ++ L + L YL ++V+ ++ F+ K ++LR N L VT Sbjct: 251 RDVLSQMLH--RRTDLQRYLSEDVVRHLAPDVTDFIEKLSVLRRFNADLAQHVTANAKAP 308 Query: 296 MRLEEIERQGLFL--QRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 L++IER+ LFL +D W+ +HPLF +FL+ + Q A + EIH A++ + Sbjct: 309 ALLDQIERENLFLLPAELDSPQPWYRFHPLFASFLQDQLQQRDPALMREIHARASQWFEQ 368 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 +G EA+ HA A D ++ + + S S L+ + LP D LL +P+L+L Sbjct: 369 RGLLIEALRHAYHAHDTEAAVHLVERADLPIRSMSFFSTLQHWMDELPADMLLGHPRLLL 428 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIRED-TMHAEFNALRAQVAINDGNPDEA 468 L W + + R+ + L R E + + +HA + LRA +A+ + + A Sbjct: 429 LGCWALVAAGRWRDAQGWLERLEKTPRTLAPGLALHALY--LRASIALQRDDTEAA 482 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 79/325 (24%), Positives = 137/325 (42%), Gaps = 71/325 (21%) Query: 584 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA-------RGDL-----DNARSQ 631 +RL +ASA G+ LS +++++C + + LA R +L D AR Sbjct: 629 SRLMATQASAAQGLHALS----EEEVRCRELALDRPLAYVLAGQARLELQLNHQDAARKL 684 Query: 632 LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA--NWLRHTAKPEFANNHFLQ- 688 L+ L +Y + +++ + +TG + A A +W A+ E N+ + Sbjct: 685 QTELDRLASRYRYGTGFLAEIEAIAA----LTGARLALAGMDWNEALARAETLRNYGVAY 740 Query: 689 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 748 G+ + + +A +L G L E++E ++A Sbjct: 741 GRQKCVVQADLLAG------TALAEMDE---------------------------ATEAM 767 Query: 749 RVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRH 808 R+L A++ A R G + + EGE + Q L+QL P L L E+ + R Sbjct: 768 RLLRAAVEAAQRLGLVRTLLDEGERVRQALQQL-----QPTLGPGSGGDYLVEVLR--RG 820 Query: 809 KFAHFDENFVERLLNHPEVPELIRTSP-LTQREWQVLGLIYSGYSNEQIAGELEVAATTI 867 AH + P+ P L RE ++L L SN++IA L + T+ Sbjct: 821 VAAHTP-------VQQAGEPDAQANGPELKPREIEILRLAAESMSNKRIALTLNLTLDTV 873 Query: 868 KTHIRNLYQKLGVAHRQDAVQHAQQ 892 K +++N+++KLGV R DAV A++ Sbjct: 874 KWNMKNVFEKLGVPSRYDAVIAARR 898 >UniRef50_A9BM99 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=cellular organisms RepID=A9BM99_DELAS Length = 924 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 124/396 (31%), Positives = 186/396 (46%), Gaps = 28/396 (7%) Query: 33 RLALITSPAGYGKTTLISQW----AAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNG 88 R+ L+ +PAG+GKTT + Q A W +LD DN RF L AAV+ G Sbjct: 50 RVVLVRAPAGFGKTTAMRQMRERLQAEGQATAWLTLDAADNDVSRFLQCLGAAVRTLGVG 109 Query: 89 HCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRH 148 ++Q +L A LA L IDD+ ++ N + +R + Sbjct: 110 PSQGAGELSQ--------ALHA-----LAGEGRSFALFIDDFEVLHNDAVLGLVRQLMEQ 156 Query: 149 QPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAES 208 PE LV+ SR LP LG+ LR QLLEI + L F+ EA++FF R P+ Sbjct: 157 LPERGRLVIGSRALPALGLGRLRTSGQLLEIDAALLRFSVGEAEEFFRLR-GCPLPREAL 215 Query: 209 SRICDDVSGWATALQLIALS-ARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLAT 267 +R+ D GW AL L +L+ R HS R +G + ++DYL ++VL + Sbjct: 216 ARLLDKTEGWIGALWLASLALERHGPHS--DFIERFSG-SERAVADYLAEDVLAQQPASV 272 Query: 268 RHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDD------TGEWFCYH 321 R FLL+++ILR+++ + + +G L+ +E+ LFL + D G + YH Sbjct: 273 RDFLLRTSILRTLDAQVCQALVPRADGAAMLQALEQAHLFLVPLADEAQGGQGGHSWRYH 332 Query: 322 PLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHA 381 +F +FLR + E EL +H AA+ + + G P AI HAL GD +L HA Sbjct: 333 SMFADFLRAQLLREQPGELTRLHLAASGWYESCGRPVPAIEHALEGGDLPHALSLLARHA 392 Query: 382 WSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 +L + LL A+P + P L + A+ Sbjct: 393 EALMEQGRMRLLSRWFSAMPAPLMAREPLLQAVAAY 428 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 85/328 (25%), Positives = 142/328 (43%), Gaps = 57/328 (17%) Query: 599 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 658 V+SSY+ M + + RGD+D A L LE LG+ + ++A Sbjct: 617 VISSYR---------MRARIAFVRGDVDAAFGLLTELE-YLGHERQLPRVTASARLEHAR 666 Query: 659 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN--- 715 + + G++AAA+ L P G W + R ++ E E +I + L Sbjct: 667 IFVLQGNRAAASEALERADDP---------GVWPRVERLRLPPHEVE--DIAIARLRWGL 715 Query: 716 --ENARSLR-----LMSDL------NRNL---LLLNQLYWQAGRKSDAQRVLLDALKLAN 759 + R++R L++D +R+L +L G A +L L+ Sbjct: 716 HFGDCRAVRDAIAPLLADAQLRGRRHRSLKLQVLCALAEAGCGDMDAAAAMLAQPLRHGA 775 Query: 760 RTGFISHFVIEGEAMAQQLRQLIQ----LNTLPELEQH----------RAQRILREINQH 805 GF+ + EG +A L++++ L+ P L + AQR+L + + Sbjct: 776 SEGFVRLMLDEGPLLAPVLQRVLSPSLSLSQTPSLTRRTEAAEPEAAAHAQRLLSALGEP 835 Query: 806 HRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAAT 865 + A E P VP PLT++E +VL L+ SGYSN +A +L V+ + Sbjct: 836 A--EPADPPELQAADAPQGP-VPATALAEPLTRKELRVLELLASGYSNAAMAEKLFVSDS 892 Query: 866 TIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 T++TH+R++ KLG R AV A++L Sbjct: 893 TVRTHLRSINLKLGARSRTQAVALAREL 920 >UniRef50_D2S7N2 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S7N2_9ACTO Length = 766 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 126/438 (28%), Positives = 192/438 (43%), Gaps = 13/438 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA--AGKNDI 59 L+ KL+ P V R RL +L + ++ + AGYGK+TL++ WA AG + Sbjct: 11 LLAGKLTVPQVPPSLVPRPRLQHRLDAVRRTPVTVVAAGAGYGKSTLLAAWARHAGMP-V 69 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W +L ++ RF +Y+ A+ +T L +L A Sbjct: 70 AWVTLGSSEDDPARFWTYVATALAGSTPDVAGPALRALTVPSVDPLDVAVPELLNGFAAR 129 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 P LV+DD H +T+ + E + F + H P L +V+ SR P +G+A LR R +L E+ Sbjct: 130 DEPTVLVLDDLHEVTDARVTEGLEFLLDHLPPALRVVLASRTEPPIGLARLRARGRLTEL 189 Query: 180 GSQQLAFTHQEAKQFFDCRL-SSP----IEAAESSRICDDVSGWATALQLIALSARQNTH 234 + L FT QEA+ + P E A + + GWA L L AL+ R H Sbjct: 190 VAADLRFTVQEARALLTSVVHGGPDDPGPEPAALAGLLARTEGWAAGLVLGALTLRDRAH 249 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 G+ ++ D+L+ EVL R LL+SA L + L V G + Sbjct: 250 G-RAVPHGPPGLRSA--VDFLLAEVLAGQTPDRRELLLRSAPLDRLCGPLCDAVLGRADS 306 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 L +ER G+F+ +D G W+ HPLF LR+ + + A + E+ R AA + Q Sbjct: 307 GAVLAGLERDGVFVTAVDGDGRWYRVHPLFRAALRR--ELDDPAGVAEVQRRAAVWFWEQ 364 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G EAI L AGD+ D L+ + + + + E L + ++ L+L Sbjct: 365 GLVEEAIRARLGAGDSAGAADWLVRSTGTFLATARVGVFAELGNRLDPAVVADSVPLLLS 424 Query: 415 QAWLMQSQHRYGEVNTLL 432 AW R V LL Sbjct: 425 LAWAAGVTGRLDRVPALL 442 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 36/59 (61%) Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 PLT+RE VL + S ++ L ++ T+K++ R+LY+KL V R++AV+ + L Sbjct: 705 PLTEREVSVLRALRGPLSQREVGAALHLSINTVKSYTRSLYRKLDVGSRREAVERGRAL 763 >UniRef50_UPI0001694022 transcriptional regulator, LuxR family protein n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694022 Length = 590 Score = 155 bits (393), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 103/372 (27%), Positives = 189/372 (50%), Gaps = 13/372 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGW 61 L+ +KL PV V R L KL ++ ++ ++ AG GKTTL++ + + D+GW Sbjct: 6 LLSAKLKAPVLRKQFVPRTELYRKLDMLSDRKVTVVQGLAGSGKTTLMTSYMRERPDLGW 65 Query: 62 --YSLDEGDNQQERFASYLIAAVQ----QATNGHCAICETMAQKRQYASLTSLFAQLFIE 115 +LDE +N F Y I ++ Q + + E ++QK +L L L + Sbjct: 66 RWLTLDETNNDVRSFWYYTIEVLKELLDQEPDHLLTMFEAISQK---PNLDHLLVLLVNK 122 Query: 116 LAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQ 175 L E + LV+D++H++ + + +S+ FF+ PE++ LV+L+R P+L + + + Sbjct: 123 LEECGAAGTLVLDNFHVLNDTALLQSLSFFLNFSPESIRLVLLTRETPKLYLGDFAMSGL 182 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 LEI ++LAFT +EA F L +E + + ++ GW LQL AL+ TH+ Sbjct: 183 YLEISERELAFTQEEADLFLTQTLGLKLEPSAADKLYHWTEGWVGGLQLSALALGHRTHT 242 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + +L ++ +YL +E+L +V + F+L++++L N+ + R+ G N Sbjct: 243 LTEPVGKL----NKYMINYLSNEILLSVSETEQQFMLQTSVLTYFNETICNRMLGINNAA 298 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 + ++ + LF+ +D+ + YH +FG FLR + + + +H AAE++ Sbjct: 299 TVIAKLLEKHLFVFTVDEEKGLYRYHQVFGEFLRGKLRERGTDVIRLLHYKAAEAYEEMD 358 Query: 356 FPSEAIHHALAA 367 E++ H L A Sbjct: 359 SWEESLQHYLQA 370 >UniRef50_Q46PW4 Regulatory protein, LuxR n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46PW4_RALEJ Length = 911 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 132/422 (31%), Positives = 195/422 (46%), Gaps = 18/422 (4%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW------AAGKND 58 KL+ P TV R+ LLA + LAL+ S G+GKTTL+SQW A+ Sbjct: 37 GKLAPPHTQLETVPRDALLADMRAHATCALALLVSAPGFGKTTLLSQWRRCLLQASDGAC 96 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 + W SLDE D + RF +Y++ A+++A + +R A L LA Sbjct: 97 VAWLSLDEADAEVNRFLAYMLLALEEAGLDIDGLSPLARSQRLDEQPQRTVAALLQALAR 156 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 P+ L++DDYH + E++ + L LVV SRN P +A LR R + E Sbjct: 157 HGRPVTLILDDYHRAECAAVDEALLTLLERGGRWLRLVVSSRNRPSWPLAALRARGLVHE 216 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + + L + EA Q F L P A ++ GWA ALQL L + + SA Sbjct: 217 LDAASLTLSMAEASQIFGAALEGPALATLHAK----TEGWAVALQLARLWLARGSGSAF- 271 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 +G S +++YL ++++DN+ R FLL++++L N L G ++ L Sbjct: 272 GLPSFSG-RVSEVAEYLAEQIVDNLPADCREFLLETSLLERFNADLADVARGRDDSARML 330 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP- 357 + + L +D WF YH L +FLR R AA EIHRAAA W+A+ Sbjct: 331 TRLSQFDALLVPLDPGRSWFRYHLLLADFLRAR---LPAARAREIHRAAA-GWLARNDDL 386 Query: 358 SEAIHHALAAGD-ALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +A+ HA A D AL LR ++ W L + E L + P+L L+ A Sbjct: 387 VQAVSHARAGDDTALALRLVVDAGGWELVLRKGIRYTENLLSQFDELATRAEPELTLMHA 446 Query: 417 WL 418 +L Sbjct: 447 YL 448 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 39/61 (63%) Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 R + + +E QVL L+ SG SN+ IA L+V+ T+K H++ ++QK GV +R AV A Sbjct: 845 RRAQFSAKEMQVLALLASGQSNKAIARGLDVSENTVKFHLKQIFQKFGVDNRAGAVSQAM 904 Query: 892 Q 892 Q Sbjct: 905 Q 905 >UniRef50_C6XP68 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XP68_HIRBI Length = 905 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 122/428 (28%), Positives = 204/428 (47%), Gaps = 17/428 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND--- 58 LI SKL+ P + VVRE+L+ +L RL+LI +PAGYGKT+L+SQW + + Sbjct: 8 LIKSKLAPPSWIGGQVVREKLIKQLDAVFTHRLSLIVAPAGYGKTSLLSQWWNVERNRKS 67 Query: 59 --IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASL---TSLFAQLF 113 I W +L+ D A Y+ +A+Q A A K Y ++ +SL A L Sbjct: 68 CFIAWVTLEAEDADVAMLARYIQSALQIALLDDAG---DAAHKSGYNNIPPSSSLSAALN 124 Query: 114 IELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 + L + P+ +V DD H P + +R FI+ P + V SR+ P+L A L Sbjct: 125 L-LDRFDRPVVIVFDDLHSAGVPEVELFLRKFIKLAPSHCHFVFASRDQPRLDQATLAAE 183 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 +Q E+G +L F+ EA++ I + +I + GW ALQL LS +Q Sbjct: 184 NQFFELGMGELKFSEDEAEKLLIQNTVQGIGDTDFQKIYNRTEGWPIALQLTFLSLKQGV 243 Query: 234 HSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 + R +L++YL ++VL ++ + + +L + + + ++ Sbjct: 244 DLSQLVDR--FSQPTGNLAEYLSEQVLLSLSPEDEEIVSHTVLLDHLTGEAVNFLCDRQD 301 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 G L +E +G+FL + YH +F ++LR R + + ++H+ AA + Sbjct: 302 GWDVLVRLEGKGVFLMPDSPNRNSYRYHQVFRDYLRSRLERNQSELYTKLHKKAARWYGD 361 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHA--WSLFNHSELSLLEESLKALPWDSLLENPQL 411 QG A+ HA+ A D ++ L++ A W L + +L +++ + + L ENP L Sbjct: 362 QGRIGRAVSHAINANDEKLIA-ALVDEAGGWRLIPIGRIDVLSQAIDHISDEILEENPGL 420 Query: 412 VLLQAWLM 419 L Q +LM Sbjct: 421 KLGQIYLM 428 Score = 42.4 bits (98), Expect = 0.082, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 38/57 (66%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 LT E ++L + +G SN++IA ++ T+K ++++++KL V+ R+DAV A++ Sbjct: 839 LTSGELEILNYLNNGLSNKEIARLTSISPNTVKFRLKSVFKKLDVSKRRDAVMIARE 895 >UniRef50_C8XC62 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XC62_NAKMY Length = 884 Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 119/375 (31%), Positives = 191/375 (50%), Gaps = 16/375 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK---ND 58 L+ + P L V R RL L + + L L+++ G+GKT ++ W + + Sbjct: 8 LVTLRTRPPSTLPAGVRRRRLETALDRSFDRVLTLVSAGPGFGKTVTVASWVQLRQIDHC 67 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQ--QATNGHCAICETMAQKRQYAS--LTSLFAQLFI 114 W +LD + F S ++AA++ A + E ++ + S + SL AQL Sbjct: 68 FAWLTLDHFADSVHGFWSDVLAAIRFSDAVPADSPLHE-ISPASSFGSREVDSLLAQL-- 124 Query: 115 ELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRD 174 A+ P+ LV+DD+HLI NP + ES+ + QP L LV+ +R P L + LRV Sbjct: 125 --ADLRRPVVLVLDDFHLIRNPEVLESIATLLDRQPSKLRLVLTTRADPVLPLHRLRVAG 182 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 QL EI S+ LAFT +E+ F + A + + GW L+L A++ + Sbjct: 183 QLTEIRSRDLAFTLEESADLFVLE-GFALTAEQLDDLYRRTQGWPAGLRLAAMTLDRADL 241 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 +A S R+ G + + +++YLV EVLD + A R FLL+++I+ + L R+TG ++G Sbjct: 242 AA--SINRVTGSDRA-IAEYLVGEVLDRSEPADREFLLRTSIVDRLCADLADRLTGRDDG 298 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 Q L + R + +DD +W YHPL LR R E A +PE+ R AA ++ + Sbjct: 299 QQALGRLLRSNALVTALDDRDQWVSYHPLLRELLRHRLLLEHRAIVPELQRRAAAWFVER 358 Query: 355 GFPSEAIHHALAAGD 369 G P E++ H++ A D Sbjct: 359 GDPIESLRHSIRAQD 373 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 40/56 (71%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 LT+RE VL + + +IA +L V+ T+K H+R++Y+KLGV++R++AV+ A+ Sbjct: 824 LTERELIVLKYLPTMLKAGEIADDLFVSVNTVKAHLRSMYRKLGVSNRREAVERAR 879 >UniRef50_B0RP73 HTH-type transcriptional regulator, LuxR family n=4 Tax=Xanthomonas RepID=B0RP73_XANCB Length = 921 Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/368 (31%), Positives = 179/368 (48%), Gaps = 12/368 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-----AAGK 56 L+ SKL P+ VVR LLA L A L L+ +P G+GK+TL++QW A Sbjct: 24 LLASKLEPPLPRVGAVVRGGLLAVLDQAQARPLTLLLAPPGFGKSTLLTQWHAQLLAREP 83 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W SLDE D + RF +L A+Q A A+C R + +L A L L Sbjct: 84 VAVAWLSLDEEDAEPARFLGHLALALQGA-GADPALCAPALHGRDHDPRDALNA-LIRAL 141 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + +++DDY I E + I H L L++ +R +P L +A L ++ +L Sbjct: 142 RAAPRRISVILDDYDRPGGSAIDELVLRLIEHAGGRLHLLLSTRRVPGLPLARLELQAKL 201 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 +GS +LA EA+ ++++P E E R + GW AL L L Sbjct: 202 TRVGSGELALDEDEAQALLGAQVAAP-EVDELRRYTE---GWPVALHLARLWLEGGAQRQ 257 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + A R +G NA ++ YL ++V++++D TR LL+++ L +N AL V ++ Sbjct: 258 QEVATRFSGRNA-QIAAYLAEQVVNDLDADTRDLLLRTSPLERVNAALADAVRQRDDSGR 316 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L +E L +D EWF YHPLF +FL+Q E A +IH+ AA + + Sbjct: 317 LLAGLEHFHGLLIPLDGEREWFRYHPLFADFLQQLLDREHPAGALQIHQRAARWFGEHQY 376 Query: 357 PSEAIHHA 364 S+A+ HA Sbjct: 377 LSDAVRHA 384 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 3/106 (2%) Query: 795 AQRILREINQHHRHKFAHFDENF-VERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSN 853 A+ +LR + QH A ++ LL+ + ++RE +VL + GYSN Sbjct: 807 AKAMLRSLRQHDPQTVAGTTRALTIQALLDRLSGDDDPANDLFSERELEVLAQLARGYSN 866 Query: 854 EQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ--LLKMM 897 +QIA L ++ T+K H++N+Y+KL R+ A+ A Q LL+ M Sbjct: 867 KQIARCLHLSENTVKFHLKNVYRKLDARSREGALAQALQRGLLREM 912 >UniRef50_Q3BPP6 Transcriptional regulator, LuxR family n=6 Tax=Xanthomonas RepID=Q3BPP6_XANC5 Length = 923 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 117/372 (31%), Positives = 180/372 (48%), Gaps = 12/372 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-----K 56 L+ KL + VVR LLA L A L L+ +P G+GKTTL++QW A + Sbjct: 24 LLAGKLEPALPPPGAVVRGALLAALDQAQARPLTLLLAPPGFGKTTLLAQWHAHLSTREQ 83 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + + W SLDE D RF +L A+Q A H A+C + R + + A L L Sbjct: 84 SAVAWLSLDEEDADAGRFLGHLAYALQNAGADH-ALCAAVLHNRDHDPRDA-AALLIRAL 141 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + +++DDY + + + E + I+H L L + +R +P L +A L + QL Sbjct: 142 RAAPRRISVILDDYDRLGSSPVDELVLRLIKHSGGRLHLALATRRVPNLPLARLDLHAQL 201 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 IGS QLA EA+ +++P+ A E R + GW ALQL L +T Sbjct: 202 SRIGSTQLALDDTEAQALLGPHVTAPV-ADELRRYTE---GWPVALQLARLWLEGDTQRR 257 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + R +G +A ++ YL ++V++++D TR LL+++ L N AL V ++ Sbjct: 258 QEVTVRFSGRSA-QIAAYLAEQVVNDLDPDTRELLLRTSPLERFNAALADAVRQRQDSGR 316 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L +E L +D EWF YHPLF +FL+Q E ++H+ AA + Sbjct: 317 LLARLEHFHGLLVPLDGEREWFRYHPLFADFLQQLLDREHPGLSVQLHQRAARWFGDHQQ 376 Query: 357 PSEAIHHALAAG 368 +EA+ HA G Sbjct: 377 LAEAVRHAWRGG 388 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 9/111 (8%) Query: 795 AQRILREINQHHRHKFAHFD-----ENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYS 849 A+ +LR + QH + +ERL + + I ++RE +VL + Sbjct: 807 AKAMLRSLRQHDPQTVGGTTRALTIQALLERLSGDDDPADDI----FSERELEVLAQLAR 862 Query: 850 GYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMGYG 900 GYSN+QIA L ++ T+K H++NLY+KL R+ A+ A Q + G G Sbjct: 863 GYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRESALAQALQRGLLRGSG 913 >UniRef50_A9AZG3 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AZG3_HERA2 Length = 860 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 136/427 (31%), Positives = 197/427 (46%), Gaps = 21/427 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW--AAGKNDI 59 LI +KL P + V R RL +L N RL LI++PAG+GKTTL+S W + Sbjct: 4 LIQTKLVVPPPRERVVKRSRLYQRLDAGRNQRLTLISAPAGFGKTTLVSAWLHITKQQHC 63 Query: 60 GWYSLDEGDNQQERFASYLIAAVQ-QATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W +L+ DN RFA YL Q Q + E + + +T+L QL + Sbjct: 64 VWLTLNSHDNDPLRFAQYLQQGFQAQLPQFNWQWLELLGHQVLINVVTTLINQLHEQTEH 123 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 W LV+DDY +I +PVIHE++ I H P L +V+ R P L +A R R+ L Sbjct: 124 W----VLVLDDYQMIDHPVIHEALTMLIEHCPPQLHIVLTCRQQPALPLARWRARNWLTT 179 Query: 179 IGSQQLAFTHQEAKQFF----DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +G L FT E +F RL+ IE S++ +GW LQL AL+ + Sbjct: 180 VGVADLRFTDYEGGEFLRDVMHVRLNQQIE----SQVLHQSAGWIAGLQLAALALSEAPS 235 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE-EN 293 H R L AS +S YL++EV + + LL A L N +L + + E Sbjct: 236 PEH-GLRALNSGQASDISVYLLEEVFQQQPTSIQQALLALAPLDRFNRSLADFMHQQCEL 294 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWM- 352 G +L++I + LF+ +D EW+ HPLF +FL Q + EL A A W Sbjct: 295 GPNQLDQIIERQLFIGALDQ--EWWQLHPLFRDFLLQHANL-IDPELRNRVLAIAAEWCR 351 Query: 353 AQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 Q + +A+H+AL A + IL + L L LP + P+L Sbjct: 352 DQHYIHDAMHYALQAQAHQLAAAILTPWVGQFVREAAFYTLRPWLDQLPIHIIWNEPRLC 411 Query: 413 LLQAWLM 419 + Q W++ Sbjct: 412 IAQMWIL 418 >UniRef50_A4XVC8 Regulatory protein, LuxR n=7 Tax=Pseudomonas aeruginosa group RepID=A4XVC8_PSEMY Length = 907 Score = 149 bits (377), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 114/439 (25%), Positives = 202/439 (46%), Gaps = 18/439 (4%) Query: 19 RERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND----IGWYSLDEGDNQQERF 74 R LL +L A RL ++++PAG+GK+T++SQ + + W S DE D++ RF Sbjct: 32 RSALLERLLAAREQRLIVLSAPAGFGKSTVLSQLRRRLQEHGARVAWLSCDEADSEPARF 91 Query: 75 ASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLIT 134 YL+AA++ A G + + Q L ++ +L LYL++DD+H I Sbjct: 92 LQYLVAAIESACPGFGSSASALLQGEISWPLEAVIDAFLDDLKALPGELYLMLDDFHRIR 151 Query: 135 NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQF 194 +P + + R+ I P+++ LVV +R P+ + + ++ L + E + Sbjct: 152 HPSLGQGARYLIERLPKHVRLVVSTRYQPRFLDEPPSLGGWAFWLRAEDLRLSRGETAAY 211 Query: 195 FDCRLSSPIEAAESSRICDDVSGWAT-ALQLIALSARQNTHSAHKSARRLAGINAS--HL 251 ++ AE ++ GW T RQ +A LAG++ + ++ Sbjct: 212 LRTIKQLALDEAELDQLHARTEGWITALHLAALALPRQRDRAAF-----LAGLSGAERNI 266 Query: 252 SDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRM 311 +DYL ++V+ ++ A + FL ++++L N L +TG +G+ L ++ + LF+ + Sbjct: 267 ADYLAEDVVASLPEAQQLFLDQTSVLDEFNAELCNALTGRRDGRDMLRRLQSEQLFVIPL 326 Query: 312 DDTGEWFCYHPLFGNFLRQRCQWELAAELPEIH--RAAAESWMAQGFPSEAIHHALAAGD 369 D+ GEWF YH LF FL+ R LA H AAA A+ ++I +AL A D Sbjct: 327 DEQGEWFRYHHLFAEFLQGR----LAKRGDPAHLLHAAARWCEARDLADKSIKYALRARD 382 Query: 370 ALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVN 429 ++L L + + + LK +P + E P + AW + + ++ E Sbjct: 383 YGFAAELLERQGARLIAGNRVYGILAILKDIPPVVIAEQPVFQIFYAWQLAFEQKFAESE 442 Query: 430 TLLARAEHEIKDIREDTMH 448 L+ + R MH Sbjct: 443 ALIEEVSTRLTQGRGKGMH 461 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 ++ RE ++L L+ +G SN IA + ++ TIK H+ NL+ KLGV R AV + L Sbjct: 844 VSHREREILRLVAAGLSNRDIAQTVHLSEATIKWHLHNLFSKLGVRSRTQAVLKGKSL 901 >UniRef50_Q2SM19 ATP-dependent transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SM19_HAHCH Length = 902 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 127/480 (26%), Positives = 215/480 (44%), Gaps = 29/480 (6%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DI 59 M++ SKL P + R+ L +L G + L+++P G+GKTT ++Q+ + Sbjct: 1 MILTSKLQPPQLPTQLLPRDALQHRLGGILKKPVTLVSAPPGFGKTTALAQFLHREQLPY 60 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATN--GHCAICETMAQKRQYASLTSLFAQLFIELA 117 WY+LDE DN F Y+ A + G + ++ SL +L Sbjct: 61 LWYALDEQDNVPGIFWRYVCAGFESVFPKIGPRSARILSVDDDALNAVRSLLDELTQLGR 120 Query: 118 EWHSP--LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQ 175 W P + + IDD H +++P++ + + +F+ H P L + ++SR +P L I +VRD Sbjct: 121 TWRRPESMLMAIDDVHYLSDPILLQQLDYFLDHLPPYLHVALISRTIPPLHIPRRQVRDS 180 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 LL + ++ L T E +F RL +EAAE ++ GW ALQL L N S Sbjct: 181 LLLLDAEHLRLTEIETPKFLQTRLGLNLEAAEMKKLHRLTDGWIGALQLYGL----NLQS 236 Query: 236 AHKSARRLAGINAS--HLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 + A L +NA +++ YL +E D + LL A++ N L ++ + Sbjct: 237 --QPANPLLNLNAPPENVAAYLAEECFQQQDDWVQAGLLNLALVPRFNLQLANQLCPGAD 294 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 + LE + ++ LFL G W+ +H L ++L+ R Q EL +H AA+ + Sbjct: 295 AALLLETLLKRQLFLSETSADGAWYRFHDLLRDWLQLRNQDRPPGELQILHGQAAQWYAE 354 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 QG+ EA+ AGD + L+ L +P + + P+L+ Sbjct: 355 QGYFLEAMEQWTLAGDWEQTALCAGRALPEILRMGHYPLVARLLAKIPPEQMRRYPKLLA 414 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 +A+L ++ R+ EV+ L AE + + E++ GNP RL + Sbjct: 415 QRAFLQLTRMRFDEVDADLDLAERYVDAMLEES----------------GNPQTLTRLKR 458 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 40/57 (70%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 L+QRE +L + +G SNE+IA L +AA+T+KTH+RN+Y K GV R A+ A++ Sbjct: 842 LSQRETTILNHLSAGRSNEEIAVALNIAASTVKTHLRNIYAKFGVRRRTQALAIARE 898 >UniRef50_Q2SIT0 ATP-dependent transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIT0_HAHCH Length = 894 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 142/542 (26%), Positives = 245/542 (45%), Gaps = 34/542 (6%) Query: 10 PVRLDHTVVRERLLAKLSGA-NNFRLALITSPAGYGKTTLISQWAAGKNDI-GWYSLDEG 67 P+RLD +++ + L + GA + R + +PAG+GK+TL QW + + W SLD Sbjct: 10 PLRLDDSLLTRQRLLRRIGAPGSARFIGLVAPAGFGKSTLARQWTQSHHALTSWISLDPA 69 Query: 68 DNQQERFASYLIAAVQQATNGHCAICETMAQKRQYAS------LTSLFAQLFIELAEWHS 121 DN F Y++ +++ NG + E A+ ++ A +T+L QL + + H Sbjct: 70 DNSASTFWGYVVEGLRR--NGLEDVAELRARLQETAHANARVLVTALINQLHLH-QDRH- 125 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 LV+DD H I N I + + + + P N TL+V SRN P +A +V+ + S Sbjct: 126 -FVLVLDDLHHIANKDILDGLTYLVDFAPANFTLIVTSRNEPSFPLARWKVKRYARLLYS 184 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIA---LSARQNTHSAHK 238 L F +E F L + ++R+ GWA ALQL++ L S K Sbjct: 185 ADLVFDSREVADLFALALDVKVSPEAAARVVGSTGGWAAALQLLSQADLKRADGALSNEK 244 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + LA + DY+ EVLD++ R F+L+ A + AL V G + L Sbjct: 245 FEQALAQAK-KEIDDYVAQEVLDDLPTHLREFILEMAGAARFDVALCDLVRGAHDSHQIL 303 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGN----FLRQRCQWELAAELPEIH----RAAAES 350 +E+ + LFL +DD G+WF +H LF + +LRQR P +H R ++ Sbjct: 304 QELAARNLFLIPLDDAGQWFRFHELFRDGALHYLRQRQ--------PNVHLQHCRQVVQA 355 Query: 351 WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ 410 + + E++ + +L+ L N L + E L P + L ++ + Sbjct: 356 SLERRLYLESVQLIMHIQAWDLLQSTLENIGNQLVRQGYHLYIIEWLNDAPQELLNQSLR 415 Query: 411 LVLLQAWLMQSQHRYGEVNTLL-ARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 L LL+ W + +++ + L+ A +H + ++DT+ E L A A + + A Sbjct: 416 LQLLKIWCLLYDNQFAAIPDLVEAAKKHPLLPEQDDTVRHELRLLEAYAARSRKDIQTAS 475 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 L + L++L + +A LG + G L ++A +++ + + + L Sbjct: 476 ALTQSVLQDLQQINAPIKSLAYFGLGNDYYGLGRLDDAMAALKEAVTLGKLEQRFSTVLS 535 Query: 530 SL 531 SL Sbjct: 536 SL 537 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 40/58 (68%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 L++RE +VL LIY G N++IA L +A T+K HIRN+Y K+G A R +A+ A+ L Sbjct: 834 LSKREMEVLTLIYEGLPNKKIADRLFLAPATVKAHIRNIYGKIGAASRTEALARARHL 891 >UniRef50_B1IL87 Transcriptional regulator, LuxR family n=5 Tax=Clostridium RepID=B1IL87_CLOBK Length = 865 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 133/543 (24%), Positives = 250/543 (46%), Gaps = 45/543 (8%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN--DI 59 LI +KL P+ + V RE+++ +L ++++ I AG GK+TL+S + KN + Sbjct: 7 LIRTKLISPMPRKNYVKREKIIKELEDIKDYKVTTIKGAAGSGKSTLLSSFIKDKNLSGV 66 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQ--ATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 W SLD+ +NQ + F YLI +++ NG + T + + ++ + EL+ Sbjct: 67 NWISLDKENNQWKSFWYYLIEILKKYLEDNGK-ELTNTFNTFIRKDEIFNVIPYIVNELS 125 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + +++V DDYH I + ++ ++ + I++ N+ + L+R L + LRV+ QLL Sbjct: 126 K-KEDIFIVFDDYHYIKDEFLNSTLEYLIKYSSSNIHYIFLTREELLLYLGELRVQGQLL 184 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI + L F+ E F L+ + +I + GW +QLIAL+ + + Sbjct: 185 EIEEESLRFSKGECLSFIKNTLNIELTEDIIDKIFNISEGWIAGIQLIALALKSRKDNIF 244 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 L ++ +YL +E+L + R FL+K++IL N L + N + Sbjct: 245 SDISVL----NKYVIEYLTEEILKQLSENERIFLVKTSILNYFNVELCNDILNITNAEEI 300 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 ++ + + LF+ +D+ + YH LF FL E ++H A E++ QG Sbjct: 301 IDSLIDKNLFVIIIDEKRSIYRYHHLFNEFLNLTFSKINKDEQIKLHLKAYEAFKKQGDI 360 Query: 358 SEAIHHAL--AAGDALMLRDILLNHA-----WSLFNHSELSLLEESLKALPWDSLLENPQ 410 EAI H L A D +++ + N+A WS LK +P + L+ + + Sbjct: 361 EEAIKHLLEIKAYDKVLIE--IENNAQNIEVWSY------------LKEIPIEYLITSKE 406 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRA-QVAINDGNPDEAE 469 L L + + E L+ +++IK+ RE F + A ++ I D + D Sbjct: 407 LTLQRLFYHFVNLEVNECKNLIDILDNKIKE-RE-----WFEVINAFKIYIYDSSLD--- 457 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGE--VLHCKGELTRSLALMQQTEQMARQHDVWHYA 527 AKL L+ + F A L + +G L +++ + ++ + ++++ + + Sbjct: 458 --AKLNLQYIEKFDFSEITKAIIYLNSCYIFFAQGYLDKAIYYLDKSNSIGEKYNISYIS 515 Query: 528 LWS 530 +S Sbjct: 516 FFS 518 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 101/200 (50%), Gaps = 23/200 (11%) Query: 695 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR-KSDAQRVLLD 753 AR +LGE E A+ +L + E +R L L++L + + K +L + Sbjct: 683 ARVIYILGEQEKAKDILYKCLEYSRKKSFKIYLVDGLIVLTLILEELNESKRTTFNLLRE 742 Query: 754 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHF 813 A+ + ++ +V+EGE + LN + EL+ + + + Sbjct: 743 AIHYSVDNRYLKPYVLEGEKL---------LNIIKELKNDKDIELTSK------------ 781 Query: 814 DENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRN 873 ++NF++ L++ E PE ++ LT+RE +V+ +++ G SN+QI L ++ T+KTH+ N Sbjct: 782 EDNFIKNLIDIME-PEKVKGELLTEREKEVMEILFEGSSNKQIGKRLNISLATVKTHMIN 840 Query: 874 LYQKLGVAHRQDAVQHAQQL 893 +Y KL V++R AV+ ++ Sbjct: 841 IYSKLQVSNRVQAVEKYKKF 860 >UniRef50_UPI0001C310C8 ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C310C8 Length = 907 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 109/358 (30%), Positives = 175/358 (48%), Gaps = 20/358 (5%) Query: 19 RERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN---DIGWYSLDEGDNQQERFA 75 RERL L+ + + L+++PAG GKT L++ W A + W +LD D+++ RF Sbjct: 30 RERLFRALAHGSANGVTLVSAPAGAGKTALVASWLASGAVAWPVAWLALDGHDDERRRFW 89 Query: 76 SYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITN 135 + ++AA+ +A + + R + +F +L LA PL LV+DD H +T+ Sbjct: 90 TGVLAALARADPSDAGLAQLAVPPR--GRIDRVFTELVERLAARTRPLVLVLDDVHELTD 147 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF 195 IH+ + +RH P L LV+++R P LG+ LRV +L EI + LAF EA++ Sbjct: 148 GAIHDDLAALLRHAPAALRLVLIARADPPLGLERLRVSGRLSEIRAADLAFDAAEARELL 207 Query: 196 DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH--LSD 253 +P++A ++ + GWA L L AL+ R + A SA +AG ++D Sbjct: 208 -AAWGAPLDAVDARELWRRSGGWAAGLVLPALALRDH---ADPSA-FVAGFGGDDRAVAD 262 Query: 254 YLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDD 313 +++ E+L R FLL++A+ + L + G + LE + ++R+D Sbjct: 263 FVLTEMLAGHPGDVRRFLLRTAVAEELTVELAVELGGRPDAAELLERLVHGNALVERLDG 322 Query: 314 TGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES---WMAQ-GFPSEAIHHALAA 367 + + Y PLF LR ELA PE W + G P A+ HALAA Sbjct: 323 GRDGYRYGPLFAGLLRS----ELARTAPEELAELHLLLARWHERDGVPGAAVRHALAA 376 Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%) Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKL 878 L H L PL+ RE VL + + SN +IA EL V+ T+KTH++++Y+KL Sbjct: 821 LEHDGARPLALPEPLSGREEAVLRCLPTMMSNREIATELYVSVNTVKTHLKHIYRKL 877 >UniRef50_Q1N117 Probable transcriptional regulator n=1 Tax=Bermanella marisrubri RepID=Q1N117_9GAMM Length = 897 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 197/892 (22%), Positives = 362/892 (40%), Gaps = 79/892 (8%) Query: 34 LALITSPAGYGKTTLISQWAAGKNDI----GWYSLDEGDNQQERFASYLIAAVQQATNGH 89 + L+ + AGYGK+ + S++ K I W SLD +N + RF +YL+A + + Sbjct: 50 VVLVYAAAGYGKSLMFSEYMFSKKHIQESVAWLSLDAKENDERRFLTYLLACLHGVDDQ- 108 Query: 90 CAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQ 149 + + + ++F + +A+ ++LV+DD H I N + + + + + Sbjct: 109 -IFNQALEKLLGGEDCEAVFLNIVDAIAQLQRKIHLVLDDCHEIRNEKVLDWIETLVLYT 167 Query: 150 PENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESS 209 PENL L +LSR ++ LR + ++EI +LAFT E + +F+ + +E Sbjct: 168 PENLRLYLLSRVCLPFSLSKLRHTNGVVEITENELAFTSDEMQLWFEQAQLVRLNRSEQE 227 Query: 210 RICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRH 269 + GW L ++ Q L + +Y ++ ++ + Sbjct: 228 QFHSISQGWPVGLTMLKALYDQFEEIDLSRPNTL-------MQEYFHEQWRPHLSNSQYE 280 Query: 270 FLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLR 329 + A+L+ ++ + ++ Q L + + + W C HP+ +L Sbjct: 281 LCRQIALLKEVSPEYLLAAYQDDAIQDELTNLLNSHKLVMPVAIYQTWVCLHPMLQAYL- 339 Query: 330 QRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSE 389 QW+ + +++ A + GF A+ AL A D L +L A S+ + Sbjct: 340 ---QWQGLESVKTVYQQACDWLHDNGFQVAAVEMALKAEDKLKAASLLQQTAESILEDQD 396 Query: 390 LSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAE--HEIKDIREDTM 447 ++ L E + +P D ++ +P+LV++ +W + + + L+A+ + D + Sbjct: 397 IAQLLEWRRQIPDDVIIASPRLVIIFSWSLALALQLDDSERLMAQMARIEGVPGTMTDEI 456 Query: 448 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 507 + A+RA +A GN D A LA ALE+LP F +R V L V + L + Sbjct: 457 SGQLFAIRAYIARCRGNIDNAASLAHQALEKLPKRNFVARAVTYFNLSNVCMTQQSLVDA 516 Query: 508 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL- 566 + + + AR H + ++ + + + +G L A + ++ L + + Sbjct: 517 RKYNRLSFETARAAGSIHLEMLAIHEHARLEQVKGNLNLAIKLLDEGLHLSHRLDNRMMA 576 Query: 567 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD 626 P + L+ + +L + +A G+ V + + + Q GD++ Sbjct: 577 PAYGRLLIYKGYMLLLQNQTAQARQLLLKGLGVCKATHDSYVIMAFVLKSQLFRQSGDIE 636 Query: 627 NARSQLNRLENLLGNGKYHS----DWISNA--------NKVRVIYWQMTGDKAAAANWLR 674 A L E + S W+S KV V + D A Sbjct: 637 KAFDYLAEAEAQMQRWNIPSFIYMPWLSTVRCNLLIDQGKVDVALSNIK-DLYQQAELAP 695 Query: 675 HTAKPEFANNHF--LQGQWRNI-ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 731 + PE HF L+G RA+ + G+ + A +L++ E+ + + L Sbjct: 696 YLLTPE----HFPALKGLLDIFYVRAKSIAGQHKDALRLLDQTLESGKLEQHGFTLLFIY 751 Query: 732 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 791 L+ L +Q G + DA AL +A I F+ M Q +Q LP+ Sbjct: 752 LMRALLRYQLGHEDDALHDFRKALTMAEPDECIMPFIEYSAGMGQLYQQ------LPDQY 805 Query: 792 QHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSP----------LTQREW 841 +H+ FV+ +L + E+ E SP L+QRE Sbjct: 806 KHKP---------------------FVQAILKNIELTE--DASPNKEFAKMRLVLSQREM 842 Query: 842 QVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 VL LI G SN++IA L ++ T+KTH R + KL V R A+ A+++ Sbjct: 843 AVLKLIAEGLSNQEIAERLFISLHTVKTHARRINGKLDVKSRTQAILKAKEV 894 >UniRef50_B5HRX4 Transcriptional regulator n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HRX4_9ACTO Length = 856 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 118/374 (31%), Positives = 181/374 (48%), Gaps = 18/374 (4%) Query: 16 TVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG---KNDIGWYSLDEGDNQQE 72 +V RERL +L A+ RL ++ +PAG+GKT+L+S WAA K I W SLD+GD++ Sbjct: 136 SVPRERLQRQLRLADT-RLTVVVAPAGWGKTSLLSGWAADPEEKRRIAWVSLDDGDDEPV 194 Query: 73 RFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHL 132 RF SY++ A+ A + A + + L ELA P LV+DDYHL Sbjct: 195 RFWSYVLTALHNAGDAISAGPLQALDATGVSPVDLALPMLLNELAATTVPHVLVLDDYHL 254 Query: 133 ITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAK 192 + + IHE++ + + + P +L +V+ SR P L IA LR R L E+ + QL F+ +EA Sbjct: 255 LADQRIHEAVEYLVTYLPASLRIVIASRTDPPLPIARLRARGDLTELRAAQLRFSPEEAA 314 Query: 193 QFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLS 252 ++ ++ + + GWA LQL AL+ R + H R HL Sbjct: 315 ALVAAVSGHDLDGVVATAVWERTEGWAAGLQLAALALRADPTKGHADDR--------HLL 366 Query: 253 DYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMD 312 DY EVL + R L+++A L ++ L L ++ R LF+ +D Sbjct: 367 DYFTAEVLPGLAPRHRDLLVRAAPLERLSGPLCDAALQVTGSAEVLSDLVRADLFVAALD 426 Query: 313 DTGEWF-CYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDAL 371 D W+ C+H LR+ E A+ E+ AA + + +A+HH L AG Sbjct: 427 DEQHWYRCHH-----LLREVLGREATADPREVLGHAAAWFADENRIDDAVHHLLRAGRDD 481 Query: 372 MLRDILLNHAWSLF 385 +++L A S F Sbjct: 482 EAAELMLRTAESWF 495 Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 36/58 (62%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 LT RE +L + + +I + ++ T+K + ++LY+KLGVA RQDAV A++L Sbjct: 796 LTDRELSILRALQGSATQREIGAAMFLSINTVKAYNKSLYRKLGVASRQDAVAAAREL 853 >UniRef50_UPI0001C312D5 ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312D5 Length = 758 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 140/530 (26%), Positives = 226/530 (42%), Gaps = 21/530 (3%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWYS 63 +K P TV + ++ +L ++ LA + +PAGYGKTTL+++WA A W + Sbjct: 14 AKFVVPATRPGTVGKAEIVGRLR-SSGAPLATVLAPAGYGKTTLLARWAQADPRPFAWVA 72 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 LD D+ F + A+ + + + ++ +LTS ++ LA PL Sbjct: 73 LDARDDDAVMFLRSVAMALHRILPLSRQVLDALSGP-GGPTLTSRVPRVGSALATVERPL 131 Query: 124 YLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQ 183 LV+DD H + + + + + + PE + V SR P L + R + +L EIG Sbjct: 132 VLVLDDLHEVASTSCLDVLAALLDYVPEGSQIAVASREAPALPLGRWRAQGRLDEIGVND 191 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L + +EA+ ++A S+ + + GW L L ALS R ++ +A Sbjct: 192 LRLSQEEARLLLAA-AGVELDAGASAALVERTEGWPAGLYLAALSLRAGAPASAGAAGFA 250 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 + +SDY E+L + A FL +SA+L M +L V LE +E Sbjct: 251 G--DDRFVSDYFRQELLSRLPAAEARFLQRSAVLERMCGSLCDSVLETARSARMLEGLEG 308 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHR---AAAESW-MAQGFPSE 359 F+ +D GEW+ YH LFG LR + +E P + R A +W +A G Sbjct: 309 TNCFVVPLDRRGEWYRYHHLFGELLRDELE---RSEPPAVVRTLNGRAMAWCIAHGEQEA 365 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ + AAG+ + ++ L+ + LEE + + L P L + AWL Sbjct: 366 AVRYGQAAGETDAVAVLVDALGLPLYYDGRMETLEEWIGWFGEEELTRYPALAVYGAWLR 425 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNA----LRAQVAINDGNPDEAERLAKLA 475 R+ E LA AE I A LRA + + DG ++A LA Sbjct: 426 MLTGRHAEAERWLAMAERATSTIPLSDGSASIEPWVANLRACM-MRDGV-EQALVDGDLA 483 Query: 476 LEELPP--GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 523 L+ LPP W + +V + + +G T + +T DV Sbjct: 484 LQRLPPESAWRPAALVVRGAVHALSGAEGRATDDFSAAVKTGLAFGSADV 533 >UniRef50_C5C615 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C615_BEUC1 Length = 749 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 123/459 (26%), Positives = 204/459 (44%), Gaps = 14/459 (3%) Query: 1 MLIPSKLSRPVRLDHTVVRERLL--AKLSGANNFRLALITSPAGYGKTTLISQWAAGKN- 57 +L+ +KL+ P R V R L+ A+ SG R+ +T+PAGYGK+T++++WAA ++ Sbjct: 17 LLLDAKLAVPARRTAAVSRADLIQGARSSGR---RVVGVTAPAGYGKSTMLAEWAALEDR 73 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLD D+ L +A + ++G + M + L +L L Sbjct: 74 PVAWVSLDTLDDDPSSLLVVLASAFARVSDGPEGLVADMVGP-DASVLGRAAPRLASALR 132 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 +P LV+DD H + +P H+ + + P LV SR Q + LR +++ Sbjct: 133 RSPTPFVLVLDDLHELQSPACHDVLGVVVAGIPAGSQLVAASRT-EQPHLPRLRAAGEIV 191 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI + L Q F P+ ++ + + GW + L +L AR + A Sbjct: 192 EIVASDLVLDVAGTLQVFAAS-HVPVSPEAAAAVTERTEGWPVGIYLASLIARHSGGDAV 250 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + G + +++DYL E + R FL ++A+L ++ L VTGE + Sbjct: 251 A----VTGED-PYVADYLQRESYRRLPEDMRTFLRRTAVLDNLCGPLCDEVTGEPGSREM 305 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L +E LFL +D WF YH LF FL A + + R AA+ + A G P Sbjct: 306 LRRLEASSLFLVPLDRRRWWFRYHALFREFLLGELTTVEAQLVDGLRRRAADWYEAHGSP 365 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 A+ L D ++ +LF +LS + + L+AL D+++ P L +L + Sbjct: 366 ERAVEQLLQTSDRERCVRLVTRLVMTLFQAGQLSTVGKWLRALGDDAVVAYPPLAVLAGY 425 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRA 456 + + R GE A + D A F++ RA Sbjct: 426 VAAYEGRAGEAERWGAVVDAAAFDGEMVDGSASFDSARA 464 >UniRef50_C9ZHK9 Putative transcriptional regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZHK9_STRSW Length = 913 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 109/396 (27%), Positives = 185/396 (46%), Gaps = 15/396 (3%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-IGWYS 63 ++ + P R + R RL+ +L A L ++ AG GKT L++ WAA + + W + Sbjct: 46 TRFAVPARPGTFLRRARLVDRLDRALTTPLTVVNGAAGAGKTLLVADWAARQEPPVAWLT 105 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 + GD F +Y++ ++ A G E + +L +L EL P+ Sbjct: 106 TEAGDQGPGMFWAYVLQTLRSA--GVPLSPEIGCPADAGRADRTLLTRLAAELGARERPV 163 Query: 124 YLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQ 183 LV+D++ + +P I + + F + H + LV+++R P L + R L EI + + Sbjct: 164 ILVLDEFDRVADPEIADQLEFVLHHAAGGVRLVLVTRTEPLLPLHRHRTAGDLTEIRNAE 223 Query: 184 LAFTHQEAKQFFDCR-LSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 LAFT +EA L P+ AE+ + + GWA L+L AL+AR+N R Sbjct: 224 LAFTPEEASVLLGLHGLRLPVPVAEA--LVERTRGWAAGLRLCALAARENPDPEMYLKR- 280 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 + + ++D+L+ EVL+ T+ LL+ ++L + L +T + L E+ Sbjct: 281 -FEVERTAVADFLLAEVLERQPPETQDLLLRVSVLERIRPELADALTERGDAAGILAELH 339 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIH 362 R F++ + T W+ HPLFG LR + L P +HR AA+ G EA+ Sbjct: 340 RGNAFVEDLGHT--WYRLHPLFGEILRAHLRMRLPGLEPVLHRRAADWLRRSGLLDEALG 397 Query: 363 HALAAGD-----ALMLRDILLNHAWSLFNHSELSLL 393 H AAGD ++ D+ L ++ +L+ L Sbjct: 398 HGAAAGDWDFTAGALVDDLALGQLFTGLRSDDLTAL 433 Score = 48.9 bits (115), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 39/58 (67%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 L+ RE VL + S E+IA +L V+ T+KTH++++++KL V R DAV+ A++L Sbjct: 853 LSGRERDVLRGLDRMMSTEEIAADLCVSVNTVKTHLKSVFRKLAVNRRNDAVRRAREL 910 >UniRef50_A6CQL5 Transcriptional regulator n=1 Tax=Bacillus sp. SG-1 RepID=A6CQL5_9BACI Length = 1099 Score = 142 bits (357), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 125/482 (25%), Positives = 220/482 (45%), Gaps = 12/482 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 +I S+L P D + R L KL+ + L L+ + AGYGK+T + +A ND Sbjct: 30 VIQSQLMPPPVKDSFMRRASLHKKLASIPKYPLTLLHARAGYGKSTALILFAHDIHNDAC 89 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGH----CAICETMAQKRQYASLTSLFAQLFIEL 116 WYS+ D+ F + L+ A++ A + + Q + SL + E+ Sbjct: 90 WYSVSPNDDDIIPFLTKLVHAIKAKIPAFGSPVLAELDMLHQHISDEQMWSLISMFVNEM 149 Query: 117 AEWHSPLYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLGI-ANLRVRD 174 + +++DDYH + VI + M+ F+ + P NL LV+ SR P GI +L+V+ Sbjct: 150 VGLKDEVVVILDDYHHVQKSMVIEKWMKHFLEYIPSNLHLVISSRTKPSWGILTSLKVKA 209 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +LLEI + L + E + + I + RI GWA A+ ++ + R + Sbjct: 210 ELLEIKQEDLMLSMDEIEHLLEDIYEITITQQDLQRIHQLTEGWAIAVHMLVGNMRNSDM 269 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 R + L D+L EVL A + FLLK++IL + + V G + Sbjct: 270 PGGFLDNRSETLQ--DLFDFLALEVLSKQPFAIQEFLLKTSILDELASDVCDAVLGTGDA 327 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 Q L+++ RQ +F+Q +D G + YH LF FL+ R + + ++R AA+ + + Sbjct: 328 QSVLQKLSRQNVFIQEID--GMKYRYHALFKEFLQNRLRRTRQEDYINLNRKAAQFFEEE 385 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 + A+HH L G+ ++ H L +L L + LK +P + E P L Sbjct: 386 NIEN-ALHHYLQVGEYSYGARVISLHGRELLQKGKLQTLLDYLKPIPEELKYEFPTLWFY 444 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 Q + + + Y + +A ++ + + + A++ ++ PD+AER+ + Sbjct: 445 QGEISRLRSSYDWAESCYRKAITSGEEAGDHYLVSIALEGIARIYLDTIQPDKAERVLQR 504 Query: 475 AL 476 A+ Sbjct: 505 AI 506 >UniRef50_A2SP76 ATP-dependent transcriptional regulator-like protein protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SP76_METPP Length = 901 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 218/908 (24%), Positives = 373/908 (41%), Gaps = 96/908 (10%) Query: 37 ITSPAGYGKTTLISQWAAGKNDIG----WYSLDEGDNQQERFASYLIAAVQQA-TNGHCA 91 +++PAGYGK+TL+S+W +G W +D D ++ A L+ A A T + Sbjct: 34 VSAPAGYGKSTLLSEWREEVIALGYRVVWLLVDGDDQDGDKLAIDLLHAFSPADTERSQS 93 Query: 92 ICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPE 151 + + + + A + +L A E+A L +DD H +++ +R IRHQPE Sbjct: 94 LVNGVGDRGKRAVIMALVA----EMASRQERTVLFVDDVHWLSDNTAATLLRPLIRHQPE 149 Query: 152 NLTLVVLSR-NLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSR 210 + LV+ R NL L + + +L + QLAF + Q P +A + Sbjct: 150 RMALVLSGRANLSSLS-SEAALDRRLHVVDHIQLAFNQSDIAQILRQYSVKPRQALVQA- 207 Query: 211 ICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI--NASHLSDYLVDEVLDNVDLATR 268 I + GW ++LIA++ + S + L G+ +S+YL + +L + Sbjct: 208 IYERSEGWPAIVRLIAMTLHSDEESQNNL---LQGLLERPQAISEYLSEVLLSQLPDRAA 264 Query: 269 HFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFL 328 LL A+LR N L+ T + + L E++R+ L + R +D + HP+ +FL Sbjct: 265 QLLLCLAMLRRFNGRLVAAATEMSDAEAVLAELQRRALPISRSNDAMLPYALHPIVRDFL 324 Query: 329 RQRCQWELAAEL-PEIHRAAAESWMAQ-GFPSEAIHHALAAGDALMLRDILLNHAWSLFN 386 R + + ++ P + RA A W+ G AI +L G+ + +A +L + Sbjct: 325 LIRIRRQGINQIGPYVERALA--WLTDNGRIDAAIDLSLDVGN--------VKNAAALID 374 Query: 387 HSELSLLEESLK---------ALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR--- 434 H ++ + LP ++L + P++ + QAW + R E +LA+ Sbjct: 375 HYARTMARYQGRHATFLYWANKLPLEALAQFPEIRVKQAWSLAVLRRAAEAKAVLAKLII 434 Query: 435 -----------AEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW 483 A H D R + R V +A A+ L P Sbjct: 435 EFAEPTNRPDAASHGFDDQRLSRIRQAVELERCTVPTLCDRAQDAAPYARSWLSRWPDAE 494 Query: 484 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 543 +A V+G + SLA ++ ++ + ++ W + + +L QG Sbjct: 495 PIDLAIANIVVGCGAMADTDFEVSLAHLRTAQRYVDECKGYYVKAWVDMWLATVLSKQGR 554 Query: 544 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 603 + A ++A + + + L IRA LL+ RL+EA A+ G+ L Sbjct: 555 YRQALYECDEAVTAVATHLGGETAVEIMLHAIRAPLLYEMNRLEEAGAALEHGLTALIE- 613 Query: 604 QPQQQLQCLAMLIQCSLARGDLDNAR-SQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 662 Q + + M +LAR L NA+ S L+ LE L + I + + + + Sbjct: 614 --QTSVDSIIM-GHVALAR--LQNAQGSHLDALETL-----AEGEVIGRTHGLSRLVVAL 663 Query: 663 TGDKA-----------AAANWLRHTAKPEFANNHFLQGQWRNIA-RAQILLGEFEPAEIV 710 ++ A A WL E + + A R + + + V Sbjct: 664 AAERIDLLLRHRELGQAQAQWLELQNFSECGPADAFESAMSDKAPRIESRIALLKGNNSV 723 Query: 711 LEELNENARSLRLMSDLNRN---LLLLNQLYWQAGRKSD-AQRVLLDALKLANRTGFISH 766 EL E A + + R LLL+ L QAG++ + A L A+++A G++ Sbjct: 724 ACELTEPALQRAIRTGQKRKQVELLLIRALAAQAGKEHERAGDALQRAIEVAMSEGYVRV 783 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 FV EGE M L L A R ++ R A F V++ + P+ Sbjct: 784 FVDEGEQMRLLLISAAGL----------AARASSPTGEYLRQILAAFS---VQK--SDPK 828 Query: 827 VPELIRTS-PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 I + LT RE ++L + S SN Q+A L + T+K H++N+Y KL V +R Sbjct: 829 TSAFIAGAESLTGRELKILRRLQSDLSNRQLADTLYITEGTLKWHLKNIYGKLNVTNRLT 888 Query: 886 AVQHAQQL 893 AV ++L Sbjct: 889 AVTAGRKL 896 >UniRef50_B9JN67 Transcriptional regulator protein n=2 Tax=Agrobacterium RepID=B9JN67_AGRRK Length = 897 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 104/370 (28%), Positives = 173/370 (46%), Gaps = 17/370 (4%) Query: 1 MLIPSKLSRPVRLDHTVVRER-LLAKLSGANNFRLALITSPAGYGKTTLISQW-----AA 54 M+I +P + VR R LLA L + RL I +PAGYGKT+L +QW + Sbjct: 1 MIISQTRFQPPSAGNEHVRRRGLLALLQRSGLRRLTTIVAPAGYGKTSLAAQWYEMFKSQ 60 Query: 55 GKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFI 114 G + W LD D Q RF L+ ++Q+ E + SL + L Sbjct: 61 GAQAV-WIPLDPEDGDQSRFLLALLESLQKLLPD-----ERKGSDANSMPVASLLSALVT 114 Query: 115 ELAEWHSPLYLVIDDYHLITNPVIHESM-RFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 L P+ L +DDYH N M + ++ V++SR+ P+ + LR+ Sbjct: 115 RLRRIREPIVLFLDDYHFAQNDATESLMAKLLAASDLGHVKFVLISRSPPRFPTSALRLN 174 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 +L +IG L+F+ EA++FF R + + + + S + GWA ALQ++ + N Sbjct: 175 SELKQIGVADLSFSDMEAQEFFGSR-AKKLTSEQISELNQRTEGWAVALQMVRVLVNDNM 233 Query: 234 HSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 S+ + G NA + YL ++V ++ +HFL +SA L +++ LI V+ ++N Sbjct: 234 DSSAILSS-FDGSNA-EMGRYLSEQVFSSLPEDIQHFLTESAALPAVSRPLIGAVSAQDN 291 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 + L + +D G W YHP+F ++L++ + L + +I R AA + + Sbjct: 292 AVALFNRLGDHALPIAVLDGQGTWIRYHPVFNSYLKEEAE-RLGIDTRQILRKAAHWFES 350 Query: 354 QGFPSEAIHH 363 G A+ H Sbjct: 351 GGDCDAAVRH 360 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 13/125 (10%) Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 +IEG ++L QL +P++ R +R+ Q + D + LL+ P Sbjct: 780 LLIEGPEFGRRLCQLAASRGVPDVVMQRLERL-----QDVVAGASAQDSD----LLSVPT 830 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 T LT RE VL L+ +G SN++I +L+++ T+K H+RN+Y KL V R A Sbjct: 831 AA----TGGLTDRERSVLRLLSAGLSNKEIGRKLDLSNNTVKFHLRNIYAKLNVTTRTAA 886 Query: 887 VQHAQ 891 V A+ Sbjct: 887 VTMAR 891 >UniRef50_B0FB23 Transcriptional regulator n=1 Tax=uncultured bacterium pFosPlaG RepID=B0FB23_9BACT Length = 1095 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/320 (28%), Positives = 166/320 (51%), Gaps = 7/320 (2%) Query: 16 TVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWYSLDEGDNQQERF 74 T++R+RL+ LS RL ++ + AGYGKTTL+ Q + K WY LD+ D+ E F Sbjct: 20 TIIRDRLMPILSNIQTKRLTMVIAGAGYGKTTLVKQAVLSFKLPAVWYRLDKYDSDFETF 79 Query: 75 ASYLIAAVQQATNG-HCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLI 133 SYL A +++ +I E + + + F + IE H +V+DDY+L+ Sbjct: 80 FSYLKAGMEEHLGDIEISIEENLQDVNKVEKILHFFLKE-IENRIQHE-FVIVLDDYYLV 137 Query: 134 -TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAK 192 N ++ +++F I + + LV++SR P + I++LRVR +L++ LAFT E K Sbjct: 138 HDNDEVNRAVKFLIENMHHKIHLVLISRAEPPIKISSLRVRRDVLDLTESDLAFTISEIK 197 Query: 193 QFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSAR-QNTHSAHKSARRLAGINASHL 251 + + +++ + + GW AL L S + ++ +A ++ G N + Sbjct: 198 KLYSDVFQLSLQSRTFADLQKKTGGWVAALILFFHSLKGKSQETADNDLLKIKGSNRI-I 256 Query: 252 SDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRM 311 + YL + + + T+ FL+K+++L + A ++ N + L ++E++ LF ++ Sbjct: 257 ATYLEENAYEMLPPETKDFLVKTSLLSKVKVAFCNQLLRINNSKEILSDLEKRHLFTFQL 316 Query: 312 DDTGEWFCYHPLFGNFLRQR 331 DD + F YH +F +FLR + Sbjct: 317 DDEKDCFTYHHIFQDFLRTK 336 >UniRef50_A1T5L2 Regulatory protein, LuxR n=2 Tax=Mycobacterium RepID=A1T5L2_MYCVP Length = 732 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 112/419 (26%), Positives = 188/419 (44%), Gaps = 12/419 (2%) Query: 3 IPS-KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIG 60 IP+ + RP D V R +L +L A + L ++++PAGYGKTT + W Sbjct: 10 IPAATIGRPRIADRVVQRPGVLRRLKAAGSGDLVVMSAPAGYGKTTAAALWDFEDDRPFA 69 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +D D+ ++ AV + T + + + A LT L + +++ E Sbjct: 70 WVRIDHLDDDPAHLLLHVATAVVRLTETDRTLLRYLRGPGRPA-LTHLV-PVVVQILEDC 127 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 PL LV+DD H ++ +++ I P T +L R++ + +A R++ ++E+ Sbjct: 128 GPLVLVLDDVHKLSAADAVTALQMLIDEAPATTTPALLGRHMLPVALARRRLQRSVVEVD 187 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 + L + +EA + +S P A + + D GWA + L A++ R T + Sbjct: 188 QEALRLSVEEAAEVLGS-VSGPHSDATVAAVVDLCEGWAAGVILTAMALRDGTALEALTR 246 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 R + + DY+V+EV+D +D T FL++SA+L + V G ++ LE Sbjct: 247 RN------NLVVDYVVEEVIDRLDGDTATFLVESAVLDRFTAEQLDTVLGRDDSARMLEM 300 Query: 301 IERQG-LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + G FL +D W+ YH LFG+ LR R + A E+ AA+ G Sbjct: 301 LYGSGNPFLIAIDHHRVWYRYHHLFGDVLRGRLRDLAPARFRELATRAADLLERDGDIDG 360 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 A+ AL AGD ++ A L +L L L + E+P + +AWL Sbjct: 361 ALLQALDAGDRTRAAALVGREAVRLGFDGRAGVLARRLAMLDARTFAEHPDAAVARAWL 419 >UniRef50_A3IBY3 Transcriptional regulator n=2 Tax=Bacillaceae RepID=A3IBY3_9BACI Length = 1062 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 107/403 (26%), Positives = 192/403 (47%), Gaps = 15/403 (3%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-I 59 ++I SK P +H + R L+ L ++ LI S AGYGKTT ++Q+ ++ Sbjct: 4 IIIQSKCIAPNPSNHCINRASLMRTLKKSHQHTCTLIHSGAGYGKTTTLTQFLYHESRRF 63 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSL--FAQLFIE-L 116 WYS+ + D+ F ++L +VQ+ +T Q ++ + L + +LF+ L Sbjct: 64 SWYSISDEDDTILPFLTHLFFSVQRIVPNFGQTFDTWDQLSRFPKMEELNRWYKLFVNCL 123 Query: 117 AEWHSPLYLVIDDYHLITNPV-IHESMRFFIRHQPENLTLVVLSRNLPQLGIA-NLRVRD 174 P+ +VIDDYHL+ + I+ M I P + ++ SR LP I L+++ Sbjct: 124 CNMDEPILIVIDDYHLVDHVFHINYLMEKIIEFAPPTVHFIIASRTLPNWDITRKLKLQK 183 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +LL I ++LAF+++E FF+ ++ + ++E ++I + GWA ++ L+A + H Sbjct: 184 RLLVITEKELAFSNEEIAVFFEEYVNVHLSSSEVAKILEMTEGWAISISLLA----EQWH 239 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 H I + L YL +EV + + +LK AI + + L+ G E Sbjct: 240 --HAPLDHWLTIPTNDLFRYLSEEVYSTMTSTEQEVILKLAIFPNFSAKLLEDFYGSELA 297 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 QM L ++ +F+Q G + +H LF FL + Q + + ++H+ AA ++ Q Sbjct: 298 QM-LNPFTQRHVFIQPATTDG-IYRFHALFSRFLEIKWQ-QYPHQYNDLHQQAALFYVDQ 354 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESL 397 A++HA + ++L HA L + L E + Sbjct: 355 HNVQAALYHAFKTNNPNFCGELLQLHAEPLIRAGQFEWLLEKI 397 >UniRef50_A1HM46 Transcriptional activator domain n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM46_9FIRM Length = 1066 Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 111/376 (29%), Positives = 179/376 (47%), Gaps = 24/376 (6%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTT-LISQWAAGKNDI 59 +L+ SKL+ P + ++R L AKL+ + + + ++++ AGYGKTT L+ Sbjct: 5 VLLRSKLNMPKLDNDVILRTALKAKLADLDKYPVTVVSAGAGYGKTTALVQALTQMSVPC 64 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCA-ICETMAQKRQY---ASLTSLFAQLFIE 115 GWY+ D+ F++YL A++ G +AQ+ ++ + L A L Sbjct: 65 GWYNPGPEDDNVYIFSAYLAGALEPLAPGITNWYLNNIAQEEKFDWKKAFQLLMAGLEDR 124 Query: 116 LAEWHSPLYLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSR---NLPQLGIANLR 171 + P LV+DD+H + T P I F+ + L +V+LSR NLP+ I LR Sbjct: 125 EEQELRPGILVVDDWHFVQTEPEIRLFFDRFLACRRPTLHVVILSREKINLPE--IDRLR 182 Query: 172 VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLI----AL 227 + ++LE Q LAF++QE QF + L E +I GW A++LI A Sbjct: 183 AKGKVLEFSEQDLAFSYQEIHQFINNFLPVTFTQQEVEQIYKHTEGWIIAIRLILNSLAN 242 Query: 228 SARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITR 287 +QN S + N L +YL +VL + FLLKS+IL S + + Sbjct: 243 KPKQNILSQAEYE------NMEILFEYLAHDVLVRQPEPLQMFLLKSSILESFHAQMCQE 296 Query: 288 VTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAA 347 + G+E L + ++GLFL +D + YH LF FLR+ + +L IH A Sbjct: 297 ILGDEFSYDLLALVRKRGLFLSEIDKG--IYRYHNLFREFLRREAS-KRVPDLQTIHVKA 353 Query: 348 AESWMAQGFPSEAIHH 363 + ++ G +A++H Sbjct: 354 GDYYLRHGEEEQALYH 369 >UniRef50_A8LZ74 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=4 Tax=Micromonosporaceae RepID=A8LZ74_SALAI Length = 953 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 101/380 (26%), Positives = 162/380 (42%), Gaps = 57/380 (15%) Query: 34 LALITSPAGYGKTTLISQW---AAG----------------------------------- 55 + L+ +PAG+GKTTL++ W AAG Sbjct: 63 VTLVAAPAGWGKTTLLTSWYQGAAGEPGGDPVRGGPVTGGAGGNRSPTPVTPAGESGPPE 122 Query: 56 ------KNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLF 109 + D+GW S++ GD+ ER SYL AA++ A + + + T Sbjct: 123 YGPGQSRPDLGWVSVEAGDDG-ERLWSYLTAALRAAVGSPVPDRPPRPDQLEVLAAT--- 178 Query: 110 AQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIAN 169 +A P+ LV+DD H IT+P + + F +RH + L LV +R+ L + Sbjct: 179 ------IAARERPVLLVVDDLHRITDPEVVTGLEFLLRHSEQRLRLVAGARSGVPLAVHR 232 Query: 170 LRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSA 229 R+ +L E+G LAFT E ++ + A R+ + GW AL+ A+ A Sbjct: 233 WRLAGELTEVGPDDLAFTGDEIADLLTAHGTA-LPADGVRRLRERTGGWPAALRF-AVRA 290 Query: 230 RQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT 289 + +L G N ++ YL +EVL +D R L +A+ ++ L +T Sbjct: 291 LPGQPDPARWVGQLDG-NQPDVAGYLREEVLGGLDPNDRELLRTTAVTDAVCAGLADALT 349 Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAE 349 G + RL ++ G L+ D W+ PL + LR A ++ E+HR AA Sbjct: 350 GRPDTGTRLADLAGVGGVLRHDDGRPPWYRCRPLLTDLLRGELDRLPAEDVRELHRRAAG 409 Query: 350 SWMAQGFPSEAIHHALAAGD 369 + G P++ + HAL GD Sbjct: 410 WYADNGRPADGLRHALVGGD 429 Score = 44.7 bits (104), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 24/99 (24%) Query: 804 QHHRHKFAHFDENFVERLLNH--------PEVPELIRTS--PL--------------TQR 839 Q R +F D + + L H P + +L+R + P+ T+R Sbjct: 837 QGFRRQFTRADPDVRDLLAAHLDTGTAHWPTLSDLVRGADEPVEAAGPAPAALAEPLTER 896 Query: 840 EWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKL 878 E +L + S SN +IA EL ++ T+KTH+RN+Y+KL Sbjct: 897 ELTILRYLQSILSNVEIAAELSLSINTVKTHVRNIYRKL 935 >UniRef50_A9WAL3 Transcriptional activator domain n=3 Tax=Chloroflexus RepID=A9WAL3_CHLAA Length = 1170 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 123/445 (27%), Positives = 202/445 (45%), Gaps = 17/445 (3%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 +L+ +K++ P + +VR + A+L A ++R+ L+ + AGYGKTT +++ A + Sbjct: 84 VLLQAKVAPPRPHRYRLVRPAVTARLREAFDYRVTLVQAGAGYGKTTALAELAMSSATVC 143 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL---- 116 WY++ E D F +YL AA E +A R + + +++ Q L Sbjct: 144 WYTIGENDRDPVSFLTYLAAACAPVLPQGAP--EALATLRSHPADRAVWTQTVDGLLNAL 201 Query: 117 -AEWHSPLYLVIDDYHLITNPV-IHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVR 173 P+ L++DDYH + I I + P L+L++ +R G + R R Sbjct: 202 AGSPRRPVLLILDDYHFVAASAEIRALTERLITYAPPWLSLLIATRYPIVSGELVRWRAR 261 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 ++LE+ LAFTH E F + A+ + GW ALQL+ R Sbjct: 262 GEVLELHRDALAFTHDEIAALFRDVFGMALSDADVDLLDHHTEGWPIALQLVWQGLRSG- 320 Query: 234 HSAHKSARRLAGINAS--HLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE 291 A + LA AS L D+L +VLD FL +A LR + A V Sbjct: 321 -QARSVSELLASGPASLAALFDFLASDVLDRQPPEIASFLRATAPLRVLTAAACDAVRQA 379 Query: 292 ENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW 351 ++ L ++ + LF+ +D + + YH LF +FLRQ+ + + +L E HR AA + Sbjct: 380 DDSDQLLAQVRDRDLFVVELDASH--YRYHHLFHDFLRQQTRSD--PDLAERHRRAARHY 435 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 A G EAI+H AAG+ + D ++ + L L + + ALP + + P+L Sbjct: 436 AAAGQAEEAIYHWFAAGEVAIAADAIVAAGEDALRNGRLDTLTDWIDALPAELIASRPRL 495 Query: 412 VLLQAWLMQSQHRYGEVNTLLARAE 436 L + + R+ E A+AE Sbjct: 496 QSYLGDLYRLRARFDEARNWYAQAE 520 >UniRef50_UPI0001C32137 ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32137 Length = 730 Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 116/406 (28%), Positives = 184/406 (45%), Gaps = 21/406 (5%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYSL 64 +L RP R T +RER+ A L A + L ++ +PAGYGKTT ++ W ++ D W SL Sbjct: 16 RLPRPRR--ETFLRERVSALLDHALDQPLTVVCAPAGYGKTTALADWCRRRDGDGAWLSL 73 Query: 65 DEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA------- 117 D+ DN RF + L+A + + + E Q + S + I LA Sbjct: 74 DDKDNDPRRFCARLLATIDDLSPSELWMAE------QALAGGSDLVETVIPLAVDALGDR 127 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + +V+DDYH I H+ + + P + LV+ SR P L + R Sbjct: 128 RGAAAAVIVLDDYHAIFEEACHQLVVALLDALPPGVRLVLASRTRPPLRLPRRRAAGAAA 187 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + +++LAF E + + RL +E + I V GW L L+A S R T A Sbjct: 188 TLDARELAFDLDETGRLLNGRLRLRLERGQVEAIHARVEGWPAGLSLVA-SLRDAT--AL 244 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + +++YL +EVLD + +TR FL +++ L MN AL V + + Sbjct: 245 ERFLETPERTPFEIAEYLTEEVLDALPPSTRVFLRRTSPLTRMNGALCAAVLDDPAARQL 304 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 +++ +F+ +DD +W YH LF L + + + ++HR AA + +G Sbjct: 305 FDDVRESNVFVIPLDD--DWVRYHRLFATLLERDLRRHEPTIVVQLHRRAARWFECEGMT 362 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWD 403 AI HA AAGD +L W LF + + +L +P D Sbjct: 363 EAAIDHASAAGDGEHAARLLHGSWWPLFAERRYTTIRRTLARMPPD 408 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 818 VERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQK 877 VE L+ P E + S T E +VL L+ + + QIA EL ++ +T+K+H LY++ Sbjct: 653 VEDALDLP-THEAVAGSEPTAAERRVLELLPTDLTRRQIAAELRLSVSTVKSHTWRLYRR 711 Query: 878 LGVAHRQDAVQHAQQ 892 LGV R DAV A++ Sbjct: 712 LGVDTRADAVSIARE 726 >UniRef50_C8XCA9 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XCA9_NAKMY Length = 846 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/338 (29%), Positives = 162/338 (47%), Gaps = 9/338 (2%) Query: 34 LALITSPAGYGKTTLISQWAAGKND-IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAI 92 + LI++ G GKT ++ WA N + W S+ D+ F + L+AA++ + ++ Sbjct: 9 VTLISAGPGSGKTLALADWAQSTNRRVAWLSVGASDDALPAFWAALVAALRAS---GASV 65 Query: 93 CETMAQKRQYASLTSLFAQLFIE-LAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPE 151 ++ AS A+ ++ LA+ +PL +V+DD H + + + S+ P Sbjct: 66 GSGLSDLLPAASFGEQDARRVVDTLAQMRAPLTIVLDDLHHVRDRHVLRSVETLFECLPP 125 Query: 152 NLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRI 211 ++V +R P L L V D+L+EI + QLAF EA Q + + A R+ Sbjct: 126 TAHVIVSARFDPPLRWRRLAVADRLVEIRADQLAFDAAEAGQLLTM-VGLRLGPAPLGRL 184 Query: 212 CDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFL 271 + GWA L+L A + +N A S RL G + ++DYL+ EVLD + A R F+ Sbjct: 185 VERTRGWAAGLRLAASALDRNAPEAAVS--RLRGSD-RPVADYLMQEVLDQLPDADRDFV 241 Query: 272 LKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQR 331 L+S++ ++ + +TG + Q RLE +E F+ + WF +HPLF L R Sbjct: 242 LRSSVADPVSAEMAQALTGVVDAQARLESLEATNGFVVGLAGGRTWFTWHPLFRELLLHR 301 Query: 332 CQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGD 369 E ++H+ AA + QG AI H A D Sbjct: 302 LTVEKPGARDDLHQRAARWLVGQGDYLAAIRHLTAVAD 339 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 23/152 (15%) Query: 744 KSDAQRV--LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 801 + DAQ + L DA++LA T + F+ G Q LR P L ++R Sbjct: 713 RKDAQALDLLTDAVELAAETSMLGPFLAAG----QPLR--------PLLARYRTV----- 755 Query: 802 INQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELE 861 + +H A +P LT+RE VL + + + QIA EL Sbjct: 756 VGRHAEFTTAALGGVPP----GEQPIPVAANGQELTERERAVLPFLATHLTATQIAEELF 811 Query: 862 VAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 ++ T+K+H + +Y+K GV+ R+ AV + L Sbjct: 812 LSVNTVKSHQQAIYRKFGVSSRRAAVDRGRDL 843 >UniRef50_Q67R98 Transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67R98_SYMTH Length = 1080 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 139/480 (28%), Positives = 216/480 (45%), Gaps = 28/480 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTT-LISQWAAGKNDIG 60 L+P +L R HT+VR RL +L A + L ++ + GYGKTT L+S +A G Sbjct: 12 LLPPRLRR-----HTLVRPRLHQRLLEALDVPLTIVQAGPGYGKTTALVSFLSAAPCRWG 66 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNG----HCAICETMAQKRQYASLTSLFAQLFIEL 116 WY++ D F +LI AV A G A+ ++ A + T + L +L Sbjct: 67 WYAVSAEDQHPLPFLLHLIHAVNAAVPGLGERAAALLQSAAGPHR--PWTQVVDALTADL 124 Query: 117 -AEWHSPLYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRVR 173 L +V+DD+H + NP I + FI H P ++ L + +R P L G+ R Sbjct: 125 HGHAGQELLVVLDDFHHVDENPQIVALVEQFIEHMPHHVHLALATRRRPPLSGLPRWRAL 184 Query: 174 DQLLEIGSQQLAFTHQEAKQFF----DCRLSSPIEAAESSRICDDVSGWATALQLIALSA 229 ++E+ + LAFT E ++ F RL+ AA ++R GW ALQL Sbjct: 185 ADVVELSEKDLAFTPAEVEELFLDQYGIRLTDEQTAALAAR----TEGWIIALQLAWQGL 240 Query: 230 RQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT 289 R+ S+ + N L DYL EVLD R FLL + +L ++ +T Sbjct: 241 RKG--SSLQDFWEGQPKNLDTLFDYLAHEVLDRQRPFIRRFLLTTCVLERLHPRACDHLT 298 Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAE 349 GE + + L +E GLF Q + D GE F YH LF FLR++ + + A+ H AAA Sbjct: 299 GEGDSERVLAALEESGLFTQAVGD-GE-FRYHQLFHQFLREQARQDPASWRTH-HLAAAR 355 Query: 350 SWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 ++A G A HH G+ D +L A + + L L LP ++ P Sbjct: 356 YYLAAGSAETAAHHFAEVGEFDQAADAILQAADGMIEAGRVEALGAFLARLPQETYSRFP 415 Query: 410 QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 L+L + + R+ E +A + + +D A+V ++ +P +A+ Sbjct: 416 ALLLRCGDVARLTSRFDEALAYYGQAAEKYAVLGDDRGRCLALMGEARVYLDTISPGKAD 475 >UniRef50_Q1LKC5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LKC5_RALME Length = 914 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 113/428 (26%), Positives = 204/428 (47%), Gaps = 17/428 (3%) Query: 1 MLIPSKLSR---PVRLDH-TVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW---- 52 M +PS++ P RL T +R+RL+ KL A + +L L+T+ AG+GKTTL++QW Sbjct: 1 MSLPSRILPKIVPPRLGSGTTIRQRLIGKLHAAGDRKLFLLTAGAGFGKTTLMAQWHHHL 60 Query: 53 -AAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQ 111 AG + W +L GD +F + L +A+ +A G M + L A Sbjct: 61 EQAGAR-VLWVTLAAGDGTLPKFCAVLESALGRA--GVSVAPAKMVTTEDSSDEFDLAAA 117 Query: 112 LFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR 171 L LA+ YL+IDD+H + +P ++ L LV+ SR P L + L Sbjct: 118 LLDALAQAPGESYLMIDDFHHVGDPATVGLVQAMADAMLPGLHLVIASRTKPALRLGRLL 177 Query: 172 VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ 231 + ++ + +L F E + F R + + +I D GW ++L A A Sbjct: 178 AMEDVVAVDGAELLFNLDETEAFLKARPDVRLGPESAWQIHDITDGWPVGVRL-ASRAMC 236 Query: 232 NTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE 291 + K+AR+ ++ +L YL +EV+D + F+L+ ++LR + L VTG Sbjct: 237 SQFPDGKTARKCV-CDSDNLDAYLSEEVIDELSPELLDFVLQVSVLRCFHADLAASVTGC 295 Query: 292 ENGQMRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAE 349 + L EI Q +FL ++ D W+ +HP+F +L +R + + + +H AA Sbjct: 296 ADAAGYLAEILSQHMFLLPVERRDGQRWYRFHPIFRTYLGKR-RASVGIDARPLHYRAAH 354 Query: 350 SWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 ++ +G +EA+ A+ + D ++ ++ + ++L + L+++ + L +P Sbjct: 355 WFIQRGRFAEAMRSAVLSDDLGLVTQLVDRALPPPHSLAQLGVFSRWLESVGCERLAGHP 414 Query: 410 QLVLLQAW 417 +L+ + W Sbjct: 415 RLLSMGTW 422 >UniRef50_A5GBS1 Tetratricopeptide TPR_4 n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GBS1_GEOUR Length = 1000 Score = 125 bits (314), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 114/415 (27%), Positives = 186/415 (44%), Gaps = 18/415 (4%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG-WYS 63 +K+S P ++ TV RERL L + I +PAG GKTTL+S W + WY Sbjct: 10 AKISAP-KVSGTVERERLFRLLDHGREKPVVWIAAPAGSGKTTLVSGWLDNRRIPSIWYQ 68 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIE--LAEWHS 121 +D GD F Y A Q A + +Y +F++ F E + Sbjct: 69 IDSGDADPATFFMYFGLAAQNAAPKKKKKLPVLTP--EYLMGIPVFSRRFFEDVFSRLPI 126 Query: 122 PLYLVIDDYH-LITNPVIHESMRFFIRHQPENLTLVVLSR--NLPQLGIANLRVRDQLLE 178 P +V D+Y + +HE +R I P +T VVLSR + PQL + +R+ D+L Sbjct: 127 PAVIVFDNYQDAPADSPLHEILRCGIDAAPAGITFVVLSRCDSPPQL--SRIRITDRLHF 184 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 +G L F+ +E+K + ++ R+ +GWA L L+ L +R+ Sbjct: 185 LGWFDLRFSVEESKTMAISHGCADLDDDVLLRLHAKANGWAAGLALL-LRSRELGPVRGP 243 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 S + + L DY +E+ D ATR FLLK+++ S ++ ++G + L Sbjct: 244 SLK-----TPAVLFDYFAEEIFRLTDGATRDFLLKTSLFPSTTVSMAEHISGNNDASAIL 298 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQGFP 357 + + R+ F++ + YHPLF FL R + A + L ++ R AA G Sbjct: 299 DRLNREHYFIESHVSDDPVYQYHPLFREFLLNRAKSLFAPDALADMQRDAARLLEQAGQI 358 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 +A AGD+ L ++ HA L + E + +LP ++ ++P L+ Sbjct: 359 EDAARLYSDAGDSAGLARLVTRHARELLLQGRNKSIREWMASLPEKTMNDDPWLL 413 >UniRef50_Q2B993 Transcriptional regulator n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B993_9BACI Length = 1077 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 119/490 (24%), Positives = 213/490 (43%), Gaps = 25/490 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 +I +KL P + + R RL AK+ + L ++ S AGYGK+T ++ + K Sbjct: 3 VIKTKLMVPPVKEGYIRRARLSAKMKAVAEYPLCIVESGAGYGKSTALALFVHDEKLPCS 62 Query: 61 WYSLDEGDNQQERFASYLIAAVQQA-TNGHCAICETMAQKRQYASLTSL--FAQLFIELA 117 WYS+ D+ F S L+A+V+ A + I + Q +Y + A LF+ A Sbjct: 63 WYSISSEDDDIIPFLSCLVASVRLAHPDFGTEILSILEQLDRYVKEEEIRSLASLFLNEA 122 Query: 118 EWHSP-LYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLGI-ANLRVRD 174 H + L++DD+H + + I+ M + H P NL L++ SR+ P + +RV D Sbjct: 123 ALHGENILLILDDFHQVEHSYTINCWMETLLEHIPPNLHLIISSRSRPGWKLLKKMRVTD 182 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +LLEI + L + E + + I+ + RIC GW A+ +I Sbjct: 183 KLLEIKKEDLVLSRDEVELLLNELYGISIKQGDLDRICLATEGWVIAVGMIG-----QQL 237 Query: 235 SAHKSARRLAGINASHLSD---YLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE 291 + KS L G ++ L+D YLV EV + FL +++I M + L V G Sbjct: 238 TDKKSISNLFGASSGSLADLFQYLVTEVFAKQPPLIQQFLEQTSIFDDMTEELCNEVLGI 297 Query: 292 ENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW 351 L+++ + LF+ ++ + + + YH LF FL + +L A P +R E Sbjct: 298 AGAGAMLQQLTEKNLFIHKVGE--KVYRYHALFKEFLEK----QLKAGQPHSYRLLNERC 351 Query: 352 MAQGFPS----EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLE 407 S +A+ H G + IL + + +L L + + +P + Sbjct: 352 ARHFVRSLQWDDALKHFEKIGSTEEMASILSDQGLRMLETGKLGSLSDRIAGIPGQTKDR 411 Query: 408 NPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDE 467 + L+ +++ + Y E R+ ++ A +A++ ++ P + Sbjct: 412 FYPVWFLEGEVLRYRSSYQEAELAYDRSATGADGKKDLIWKARALEGKARIYLDTIQPHK 471 Query: 468 AERLAKLALE 477 AER+ A++ Sbjct: 472 AERILSQAIQ 481 >UniRef50_A5UYI0 Transcriptional activator domain n=2 Tax=Roseiflexus RepID=A5UYI0_ROSS1 Length = 1204 Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 114/414 (27%), Positives = 188/414 (45%), Gaps = 21/414 (5%) Query: 16 TVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA--GKND--IGWYSLDEGDNQQ 71 ++R L A L+ L ++T+PAGYGKTTL++QWA G+ + W +LD GD Sbjct: 93 VLLRPDLQALLAEVRLHPLTVVTAPAGYGKTTLLAQWAQELGRTGAPVSWLTLDVGDRDP 152 Query: 72 ERFASYLIAAVQQA-----TNGHCAICETMAQKRQYASLT-SLFAQLFIELAEWHSPLYL 125 F +YLI A Q A + + + +R + + +L + L ++ S +L Sbjct: 153 ALFLAYLIRAFQMAFPALGRDASRVLSSAASLERDWPLVAGALCSDLQRQVL---SAAFL 209 Query: 126 VIDDYH-LITNPVIHESMRFFIRHQPENLTLVVLSR---NLPQLGIANLRVRDQLLEIGS 181 +DD H +I + VI + + + +R P L +VV SR ++P L + LR +L+E+ Sbjct: 210 FLDDLHQVIDSAVIGQILGYLLRAAPPTLHVVVASRREVHIPPL--SRLRTEGRLVEVRQ 267 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 L T ++A+Q + + E + + GWA +LQL A + + + Sbjct: 268 ADLHLTPEQARQLLTIQ-GVALSDEELTTLLARTEGWALSLQLAARALAELPAERRSAFV 326 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 G + L YL DEVL ++ FL +A+ + L+T V ++ L + Sbjct: 327 EALGGGSEQLLSYLADEVLADLPSDVLEFLRLAALPPHFDADLLTAVLLRDDVPYLLRRV 386 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQGFPSEA 360 GL L +DD GE +HPL+ L + + E L HR + +G EA Sbjct: 387 RTLGLPLTPLDDQGERLRFHPLWRELLLRGIDEFVDDETLAAFHRRFGRQFEMRGELEEA 446 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 + H AG L LL AW L N + ++ +P + NP+L+ + Sbjct: 447 LEHYAHAGSVDNLERALLERAWPLLNSPRRDTVRRWIEQIPVERRDANPELLYM 500 >UniRef50_C1B9T9 Putative LuxR family transcriptional regulator n=1 Tax=Rhodococcus opacus B4 RepID=C1B9T9_RHOOB Length = 897 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 103/375 (27%), Positives = 176/375 (46%), Gaps = 26/375 (6%) Query: 10 PVRLDHTVVRERLLAKLSGA-----NNFRLALITSPAGYGKTTLISQWA----AGKN--D 58 P + TV R RL L+ A + + +AL+ +PAG GKT L + WA AG + Sbjct: 34 PGAVGRTVTRTRLHTLLTEALTSEDHPYPVALVCAPAGSGKTQLAADWARDVLAGADAPT 93 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHC-AICETMAQKRQYASLTSLFAQLFIELA 117 I W +++E N ++ A+ +A N +C+ R A L A+L +L Sbjct: 94 IAWITIEERHNDLGVIHRAILRALNEAGNPRLRELCD-----RLDADSPDLGARLSAQLN 148 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 E ++LVIDD HL+ + I + F+R QP L ++ R P L + LR+ +L Sbjct: 149 ELGENIWLVIDDAHLLRDTDILNDLESFMRWQPPMLRTIICGRFEPPLALQRLRLDGKLF 208 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + ++ LAFT EA ++ + + D GWA ++L +S +T Sbjct: 209 TVTARDLAFTADEAAAML-TEHGVRLDPGDLDALMDRTEGWAAGIRLAGMSLEGHT---- 263 Query: 238 KSARRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 +R +A + + ++DYL++EVL R FLL++++ S +TG + Sbjct: 264 DPSRLIAEFSGTRRAVADYLIEEVLAGQTDEMREFLLRTSVPESFTTEFAEVLTGCTDAH 323 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ- 354 +++ +E + R+D++ + YHPL ++LR E+ + AA W A+ Sbjct: 324 DKVDWLEHHNFLISRIDESPTHYRYHPLLRSYLRAEISRIGHVEVEHLELTAAH-WHAEF 382 Query: 355 GFPSEAIHHALAAGD 369 G A+ HA+ +GD Sbjct: 383 GDSLVALEHAVNSGD 397 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 45/78 (57%) Query: 815 ENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNL 874 E F E L E + LT RE ++L + S + EQIA +L V+ T+KTH+R + Sbjct: 816 EPFAETLRASFPRSESAASDMLTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGI 875 Query: 875 YQKLGVAHRQDAVQHAQQ 892 Y+KLGV R+DA+ AQ Sbjct: 876 YRKLGVTSRRDAIAAAQH 893 >UniRef50_UPI00006A2BBB UPI00006A2BBB related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A2BBB Length = 874 Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 125/472 (26%), Positives = 205/472 (43%), Gaps = 26/472 (5%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG----W 61 K++ P V+R RL +F ++ +PAG+GKT+L++QW G W Sbjct: 41 KVTPPRTPRDLVLRTRLAPTADALRDFSCFVVQAPAGFGKTSLLAQWRKEFQQTGVAAAW 100 Query: 62 YSLDEGDNQQERFASYLIAAVQQAT--NGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 S D+ R ++ AV+ A+ +G + +T L A EL + Sbjct: 101 VSAQAKDDPH-RLVQSMVLAVRMASGQSGFGRMAFEFDGTDPLEHVTVLLA----ELVQS 155 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 + L++D+ + +++ + +R P NL V+ +R QL I +L Q + + Sbjct: 156 AQDVVLIVDEADKLPE-ASRKTLIYLLRQAPPNLRPVIAARPDWQLDIDDLVAYGQCMVL 214 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQL-IALSARQNTHSAHK 238 GS L F E Q R + ++ ++RI GW +QL + ++AR SA Sbjct: 215 GSPLLRFDLGETLQLVQARFGAQVDRTLAARIHALTEGWPLGIQLALTIAARGADASAGV 274 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + L G L LV +L N++ R FL++ AIL ++ L V G+ + RL Sbjct: 275 TGMALLG---GELQGQLVKLLLANMETEDRDFLVRIAILDHLHPDLCRVVAGDTHALERL 331 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA-QGFP 357 + + + G W H L + LR A E H A A W+A QGF Sbjct: 332 ARLSSETPVFASAEG-GTWLRMHALVRDALRLDFNDLSARRQSEAH-ARATQWLANQGFV 389 Query: 358 SEAIHHALAAGDALMLRDILLNHAW-SLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +A HALAAG + ++ + SL + + E L+ +P D L P+L+L A Sbjct: 390 DDAARHALAAGQQQVAYNLAERSLYESLMQRGRRAAVLEWLEHMPADELDRRPRLLLAVA 449 Query: 417 WLMQSQHRYGEVNTLLAR--AEHEIKDIREDTMHAEFNALRAQVAINDGNPD 466 W + S R+ E +AR A+ ++ D M E + + A+ +PD Sbjct: 450 WTLASSERHAEAGRFVARILAQPDVG----DAMRCECALILSGAAVFADDPD 497 >UniRef50_B5HWH8 LuxR-family transcriptional regulator n=9 Tax=Streptomyces RepID=B5HWH8_9ACTO Length = 894 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 94/374 (25%), Positives = 171/374 (45%), Gaps = 24/374 (6%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIGWYS 63 ++ + P R + R RL L+ L ++ AG GKT L++ W A + W + Sbjct: 31 TRFAVPSRPATFLPRRRLTQHLAEGLRTPLTMVNGSAGAGKTLLVADWTASLDRPVAWLT 90 Query: 64 LDEGDNQQERFASYLIAAVQQATNG-----HCAICETMAQKRQYASLTSLFAQLFIELAE 118 ++ + F +Y + A+ + HC ++ + +++ +L Sbjct: 91 VEAEKQRPGTFWAYFLQALSASGTELSDRVHCPADPNRISRK-------VLSEIAEDLVG 143 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 +V+D++ ++ + E + F ++H L L++++RN P L + R L E Sbjct: 144 RDPAPIVVLDEFDRVSASEVAEQLEFVLQHAGSGLRLILVTRNEPMLSLHRYRAAGTLTE 203 Query: 179 IGSQQLAFTHQEAKQFFDCR-LSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 I +LA +EA + LS P +A S + + GWA L+L AL+A+++ Sbjct: 204 IRDAELALNPEEAAALLELHGLSLPADAVRS--LVERTRGWAAGLRLCALAAQESP---- 257 Query: 238 KSARRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 R L A H ++D+L+ EVL AT+ LL+ ++L L+ R+T + Sbjct: 258 DPERYLKEFEADHSTVADFLLAEVLRRQPPATQDLLLRVSVLDRFCPDLVNRLTHRTDAA 317 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 + L E+ R F++++ W+ HPLFG L+ + P++HR+AA+ +G Sbjct: 318 LILAELHRDNAFVEQLGQG--WYRLHPLFGEILQTHLRVRHPGLEPDLHRSAAQWMRRRG 375 Query: 356 FPSEAIHHALAAGD 369 EA+ H AA D Sbjct: 376 ALPEALAHGAAADD 389 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 40/66 (60%) Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 P I L++RE VL + S E+IA +L ++ T+KTH+++LY+KL V R +AV Sbjct: 826 PAPIVVQELSERERDVLQRLAQMMSTEEIAVDLYLSVNTVKTHLKSLYRKLAVNRRSEAV 885 Query: 888 QHAQQL 893 A+ + Sbjct: 886 HRARDM 891 >UniRef50_A2SDT6 ATP-dependent transcriptional regulator-like protein protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SDT6_METPP Length = 919 Score = 119 bits (299), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 105/326 (32%), Positives = 153/326 (46%), Gaps = 17/326 (5%) Query: 16 TVVRERLLAK-LSGANNFRLALITSPAGYGKTTLISQWAAGKN------DIGWYSLDEGD 68 V R LLA L A + RL L+ +PAG+GKTTL+ Q AA + W SLD D Sbjct: 58 VVPRPALLAPVLEQAADARLVLVQAPAGFGKTTLLVQLAAALATAASGAQVVWVSLDAED 117 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP---LYL 125 N R + L A+ T+ + Q AS + A + A P + L Sbjct: 118 NDANRLFAALFGALAPLDLPWAVPPATVLAQLQDASPAARTALGLLTDALGVRPESRIAL 177 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 V+DD H +T+ + + I P L L++ SR P L +A R +L+E+G + L Sbjct: 178 VLDDLHHVTDAAALQLLDTLIARAPPELCLLIGSRTAPPLSLARWRAGGELVELGLEDLR 237 Query: 186 FTHQEAKQFFDCR-LSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 F A+ R L +P +AA + + GW L L+ SAR T S LA Sbjct: 238 FDLGAAQALCRLRGLQAPSDAALQAALAR-THGWVAGLHLLLGSARAGTGSLPA----LA 292 Query: 245 GINA-SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 G A HL DY EVL + + F+L ++L ++ AL VTG ++ + L+++ Sbjct: 293 GPAAHRHLFDYFAQEVLAGLPPPLQQFVLYGSVLPELSPALCQAVTGRDDARAVLDDLFG 352 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLR 329 + LFL +DDT +H LF +FLR Sbjct: 353 RQLFLSALDDTVPVLRFHDLFRDFLR 378 >UniRef50_A5GAS8 Transcriptional activator domain n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GAS8_GEOUR Length = 1082 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 107/424 (25%), Positives = 180/424 (42%), Gaps = 20/424 (4%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGW 61 I +K+SRP L V R RL A L +A +++PAG GK+TL++ + + W Sbjct: 7 ISAKISRPT-LCKVVQRTRLFALLDEKLAKPVAWVSAPAGSGKSTLVASYLDARELPCIW 65 Query: 62 YSLDEGDNQQERFASYLIAAVQQA-----------TNGHCAICETMAQKRQYASLTSLFA 110 Y DEGD F Y+ A ++A T + A T ++ + + Sbjct: 66 YKCDEGDADLATFFYYMGLAAKKAAPRYKKPLPLLTPEYLAGIPTFTRRYFEILYSRVMP 125 Query: 111 QLFIELAEWHSPLYLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIAN 169 L+ +V+D+Y + HE PE + ++V+SR+ P + Sbjct: 126 HCSPSLSRMGMGAVIVLDNYQDVPAESPFHEMAATGFDSIPEGVHVMVISRSGPPSACSR 185 Query: 170 LRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSA 229 LR D++ + + FT E+ + R+ + ++ ++ + + GWA + L+ A Sbjct: 186 LRANDKIGLLRYSDIRFTLAESMELVQRRIPA-LDNEHANMLHEKSQGWAAGIILMLERA 244 Query: 230 RQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT 289 +A + + DY E+ D ++ R FLLK+A L ++ L R+T Sbjct: 245 GLGGTGIEGAA----DLACDRIFDYFAGEIFDRMEQVVRDFLLKTAFLSVLSVPLADRLT 300 Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAA-ELPEIHRAAA 348 G + L + R+ F +R+ + + + YHPLF FL R + A E+ + R AA Sbjct: 301 GSGSAGRILSTLNRRHYFTERLSGSEQAYQYHPLFREFLLNRAETACAPDEVAAVQRKAA 360 Query: 349 ESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLEN 408 G EA AGD L ++ HA L +EE L A+P + Sbjct: 361 LLLEQDGRMEEAARLYGDAGDRDGLGRMVTGHARELLGQGRSKTVEEWLAAIPGGPADDE 420 Query: 409 PQLV 412 P L+ Sbjct: 421 PWLL 424 >UniRef50_Q0B0H9 ATP-dependent transcriptional regulator-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0H9_SYNWW Length = 1111 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 125/484 (25%), Positives = 215/484 (44%), Gaps = 31/484 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS------QWAAG 55 L+ S+L+ P + +++ R+RL + R+ IT+PAGYGK+ ++ +W Sbjct: 27 LVNSQLTPP-HIKNSIKRDRLQELGLSILSHRVTTITAPAGYGKSVWVASLLQEEEWPP- 84 Query: 56 KNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCA-ICETMAQKRQYASLTSLFAQLFI 114 W SL+ + F +LI A ++ + + T+ R + A I Sbjct: 85 ---TAWLSLERYNGDPSFFLYHLIHAFKKINPEYGSQSLRTLNSLRNLKQDYFIAASAII 141 Query: 115 ELAEWHSPLYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 + + LV+DDYHLI N ++ + M + IR P ++V+SR P+L + ++ Sbjct: 142 QELPQDQEMVLVLDDYHLIDQNQLLPKIMEYLIRRLPLRTHIIVISRTPPKLNLHQELLK 201 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 +LLEI SQ L FT +E ++ + + + I GWA ++L+ LS +Q Sbjct: 202 GELLEISSQALLFTPEEIRELLSLE-GLVLSTEDCTYIHHCTEGWAAGVRLLGLSLKQFG 260 Query: 234 HSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 + + L G + + L YL E+ + + + FLL +AIL + L V G+ Sbjct: 261 GNWRNNLSSLTGKHTA-LYIYLSHELFNYLTRELQDFLLDTAILPYLEPILCQEVLGDTR 319 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPE----IHRAAAE 349 + ++ E+ GL Q +T W +H L FL +R L PE + R AA Sbjct: 320 SEEKIHELHLMGLLSQVESNTTIWR-FHHLIREFLLERA---LNIRSPEYIVSLRRRAAF 375 Query: 350 SWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSEL-SLLEESLKALPWDSLLEN 408 G +A+ A D D++L +A F + + L +K LP D L + Sbjct: 376 HLEKNGHIDQALEQLAACADWSKAADLILAYAEPYFLENGCHNALYSWIKTLPVDYLNSH 435 Query: 409 PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAI----NDGN 464 QL+ + ++ H + +L+RA +D + + E +L A +A+ ND Sbjct: 436 HQLLYYKGICLRDNHP-QKAQEILSRAAARARD--KGDVKGEIRSLMAILAVHIFGNDST 492 Query: 465 PDEA 468 EA Sbjct: 493 RSEA 496 >UniRef50_Q0S8R3 Transcriptional regulator n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0S8R3_RHOSR Length = 881 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 99/369 (26%), Positives = 166/369 (44%), Gaps = 26/369 (7%) Query: 16 TVVRERLLAKLS-----GANNFRLALITSPAGYGKTTLISQW-----AAGK-NDIGWYSL 64 TV R RL L+ A+ +AL+ +PAG GKT + W AAG I W ++ Sbjct: 23 TVTRTRLHTMLTEALTDDAHPCPVALVCAPAGSGKTRAVGDWVRELLAAGDAPTIAWLTI 82 Query: 65 DEGDNQQERFASYLIAAVQQATNGH----CAICETMAQKRQYASLTSLFAQLFIELAEWH 120 +E N + ++ ++ N CA ++ A L AQL L E Sbjct: 83 EERHNDLDVVHRAILRSLTDTGNARVQKACAGLDSEAPD--------LGAQLSAALHELG 134 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 +++VIDD HL+ + + + F+R QP L +V++ R P L + LR+ +L + Sbjct: 135 ENIWMVIDDAHLLRDTDVLTDLESFVRWQPPMLRMVIIGRFEPPLALQRLRLDGKLFTLT 194 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++ LAFT EA + D + A + + D GWA ++L +S + + A Sbjct: 195 AKNLAFTSDEAAEMLD-EHDVVLSADDLDALMDRTEGWAAGIRLAGMSLEGHPDPSRLIA 253 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 A ++DYL++EVL R FLL++++ S L ++TG + ++ Sbjct: 254 EFTGDRRA--VADYLIEEVLAGQTDEMREFLLRTSVPVSFTVELAEKLTGCTDAHGNIDW 311 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +E + R+ D+ + YHPL ++LR E+ + AA G A Sbjct: 312 LEHHNFLISRITDSPTHYRYHPLLRSYLRAEISRIGHVEVEHLELTAAHWHDEFGDALLA 371 Query: 361 IHHALAAGD 369 + HA+ +GD Sbjct: 372 LEHAVNSGD 380 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/78 (42%), Positives = 46/78 (58%) Query: 815 ENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNL 874 E F ERL E + LT RE ++L + S + EQIA +L V+ T+KTH+R + Sbjct: 800 EPFAERLRASFPRSESAASDMLTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGI 859 Query: 875 YQKLGVAHRQDAVQHAQQ 892 Y+KLGV R+DA+ AQ Sbjct: 860 YRKLGVTSRRDAIAAAQH 877 >UniRef50_D1CIB7 Transcriptional activator domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIB7_THET1 Length = 1108 Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 107/439 (24%), Positives = 192/439 (43%), Gaps = 26/439 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGW 61 +I SKLS P + + R L+A + +L+L+T+P GYGKTT +S +A W Sbjct: 6 IIRSKLSAPAQKSGIIHRRALVAWFARMQRHKLSLLTAPPGYGKTTTLSLFAQRHPRTVW 65 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLF--IELAEW 119 Y+L D F +L+AA+ G C + + + L L I + Sbjct: 66 YTLSSADEDPSVFLQHLVAAM-----GTCCVLGEGEDPSAWLQGSDLDRALLGIIHAMQG 120 Query: 120 HSPLYLVIDDYHLITNPVIHESMRF---FIRHQPENLTLVVLSRNLPQLG-IANLRVRDQ 175 + LV+DD+ + + E +R I + P+ + + SR L I LR + Sbjct: 121 SAGFALVLDDFDCVRDQ--REVLRLLDSLITYSPQQVVFTLASRTRVHLPCIPKLRASGR 178 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 LL + S+ F+ ++ Q + + + + GW ++++A Sbjct: 179 LLRLDSEIFRFSREDVAQLLRAE-GVHLGTDDLETVYELTEGWPLGVRIVAQYLASGATL 237 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + A+ S L +YL EV+ F+L+S+ L ++ AL+ +V G + Q Sbjct: 238 SDLRAK--LAYRGSELYEYLAQEVISKQPSEVVSFMLESSPLPTLEPALLDKVLGRNDSQ 295 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 LE++E +GLF+ R+ + + YHPL ++L ++ + A + E+ R AA + +G Sbjct: 296 QMLEDLEERGLFVSRLGE--DKLRYHPLVRDYLLRQAR-AAGARVAEVARRAARYYDTKG 352 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 P A+ L D + +L A S L +++++P L + P+L + Sbjct: 353 EPEHALELWLLGEDYDEIYSMLARWAPRWLREGHYSRLLRAIESIPAPRLEDYPELTYYK 412 Query: 416 AWLMQSQHR-------YGE 427 A +Q+ + YGE Sbjct: 413 ARALQAMGKLHTAFELYGE 431 >UniRef50_A1AUN2 Transcriptional activator domain n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AUN2_PELPD Length = 1061 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 156/349 (44%), Gaps = 12/349 (3%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYS 63 +K++RP+ D V RERL L GA ++ + P G GK++L++ + + WY Sbjct: 6 NKINRPLLTD-IVPRERLFRLLDGALKRQVVWVHGPGGSGKSSLVASYIDSRALPCLWYQ 64 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIE--LAEWHS 121 +D GD YL A++ A A + Q+ L LFA+ + E A S Sbjct: 65 VDRGDQDVATLFYYLGMALENAGFSTEAPSLPLLTPGQHPEL-ELFAKRYFERLFAALPS 123 Query: 122 PLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 LV DD H + + + H +R + P+ + +VV+SRN + +LR R L I Sbjct: 124 SCVLVFDDCHEVADDSLFHRILRNGLYEIPDGIHVVVISRNAVPSSLIHLRSRSMLNTIS 183 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 L T E + R + ++ ++ R+ + + GW L L+ N A Sbjct: 184 WSALRLTPAETEAIIRARRADHVDREDARRLHERIQGWVAGLVLVLEGGYANISDAVPEM 243 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + + + DY E+ +D AT+ FLLK+A+ + R+T + + L Sbjct: 244 QPV-----QEVFDYFAAELFAGMDEATQIFLLKTAVFSEVAPFPAQRLTQQHDAGRILSW 298 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQR-CQWELAAELPEIHRAAA 348 + + F +R + G + YHPLF FL +R CQ+ E+ I AA Sbjct: 299 LYEKNCFTERRYEGGSMYRYHPLFREFLLERACQFFSPDEMRGIRHTAA 347 >UniRef50_Q13RN6 ATP-dependent transcriptional regulator, MalT related, LuxR family n=3 Tax=Burkholderiales RepID=Q13RN6_BURXL Length = 930 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 121/447 (27%), Positives = 204/447 (45%), Gaps = 32/447 (7%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKT-TLISQWAAGKN--- 57 LIP + +R + RE L+A+L A R +I PAG KT T+++ A Sbjct: 43 LIPPRAAR-----QLIPREALMARLLEARRQRCVVIQGPAGSAKTSTMLALRQAMLTLDF 97 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETM-AQKRQYASLTSLFAQLFIEL 116 D+ W SL D+ F L+A++ E + ++ + ++ L + Sbjct: 98 DVAWLSLAPEDDDLTAFFHGLLASLASVDPAIVREAELLVGRESEETAVEHWVITLVRGI 157 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 L L++DD H + N I +++R+ + + P L +V+ SR + +A LR + Sbjct: 158 TRRKRELVLMLDDVHYLQNARILDALRWLLDYAPPQLHVVLASRRALPVSLARLRSQGLA 217 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIA--LSARQNTH 234 E+ + L F+ +E+++F +L I ++ + + GWA LQL A L R+ Sbjct: 218 TELDREDLRFSAEESERFLREQLGD-ITKRDAQVVHELTDGWAAGLQLFAIDLKTRKGAA 276 Query: 235 SAHKSARRLAGINASHLSDYLVDEVL-----DNVDLATRHFLLKSAILRSMNDALITRVT 289 A + R +A + Y EVL +++ L TR L + R + +L+ + Sbjct: 277 FAPATVR-----DAETFAHYFEREVLVRLAAEDLLLLTRAALCERFCAR-LCASLMQHAS 330 Query: 290 GEENGQMRLEEIERQGLFLQRMD---DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRA 346 + RL +E LF+ + D W+ HPL L++R AAEL E+H A Sbjct: 331 SAGDVAARLSRLEGDNLFITQTGVGQDGETWYRLHPLLREVLQRRVAGLPAAELRELH-A 389 Query: 347 AAESWMA-QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSL 405 AA W++ QG+ EA+HHA+ A +A D++ A L EL L ++ LP + Sbjct: 390 AAWQWLSVQGYVDEAVHHAVLADNAQAAADLVEGCAHDLLARGELRQLAGLVRRLPPAQI 449 Query: 406 LENPQLVLLQAWLMQSQHRYGEVNTLL 432 E L ++ A+L Q GE + L+ Sbjct: 450 AERFDLRVITAYL---QMYAGETDALM 473 Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 37/52 (71%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 L++RE +V+GL+ N++IA ++V+ T+K H++N+Y+KL V+ R AV Sbjct: 870 LSERENEVMGLLALALPNKKIARVMDVSLDTVKWHLKNIYRKLEVSGRDGAV 921 >UniRef50_A3PV03 ATP-dependent transcriptional regulator-like protein n=1 Tax=Mycobacterium sp. JLS RepID=A3PV03_MYCSJ Length = 881 Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 91/315 (28%), Positives = 144/315 (45%), Gaps = 20/315 (6%) Query: 17 VVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYSLDEGDNQQERFA 75 +VR RL L + + + +PAG GKTTL+S+ AA + +GWY + + D + RF Sbjct: 24 LVRARLEQALLDGPSAVVDSVVAPAGSGKTTLLSRVAATSSAPVGWYRVTDDDGPEARFV 83 Query: 76 SYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVI-DDYHLIT 134 ++L AA+ +C T + A LT+L W P +VI DD H I Sbjct: 84 AHLAAALGP-------VCGTGDVRSMDALLTAL--------DNWSGPRAVVILDDLHEIA 128 Query: 135 NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQF 194 + ++ F+ +P L +++ SR P + I L+V EIGS QL F E ++ Sbjct: 129 DTPAEHALERFVSLRPRRLRVILGSRRTPDINIPRLQVSGTFHEIGSDQLRFRSWEVEEL 188 Query: 195 FDCRLSSPIEAAESSRICDDVSGWATALQLIAL-SARQNTHSAHKSARRLAGINASHLSD 253 F P+ ++ + GWA LQL L +A ++ H++ L G + + Sbjct: 189 FANVYRQPLRPEAAAALTRRTGGWAAGLQLFHLATAGRSAAERHQAVSDLGG-RSKLVRS 247 Query: 254 YLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDD 313 YL VL + R FLL++ L ++ + + LE ++R+ LF DD Sbjct: 248 YLARNVLGALPDERRVFLLRTCTLGRLSGPACDALLNTDGSHRVLEMLDREQLFTS-TDD 306 Query: 314 TGEWFCYHPLFGNFL 328 G F YH + N L Sbjct: 307 DGLHFRYHEVLQNHL 321 >UniRef50_Q1Q7C6 Similar to ATP dependent transcriptional activator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q7C6_9BACT Length = 1113 Score = 115 bits (288), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 104/402 (25%), Positives = 171/402 (42%), Gaps = 12/402 (2%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYS 63 +K++RP ++ RERL + + + I++PAG GKTTL + + + WY Sbjct: 37 AKITRP-KIAGIFPRERLFRLMDKGRDKPVIWISAPAGSGKTTLAASYLNSRKLSYLWYR 95 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIE--LAEWHS 121 +DEGD F + AV++A H + +Y LF + + E + S Sbjct: 96 VDEGDADIATFFYSMGIAVKKAVPSHRKPLPLLTP--EYQQSIPLFTKRYFEELYSRLTS 153 Query: 122 PLYLVIDDYH-LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 P +V D+ N + H+++ + P+ ++++ +SRN P A++ ++ IG Sbjct: 154 PWIIVFDNIQDAPVNSLFHKTLTSSLDIIPDGISIIAVSRNDPPPHYASISANNKSHLIG 213 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 +++ FT +E+K+ I +R+ GWA L LIA R T + Sbjct: 214 REEVRFTMKESKEILLVGAKKRIANTSLTRLYTQTEGWAAGLVLIAEHIR--TKGLDDTL 271 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 R +G DY +E+ D T+ FLLK+A L M + ++TG L E Sbjct: 272 R--SGSIYEKAFDYFANEIFIKTDKKTQIFLLKTAFLPRMTIHMAEKLTGVSESGRILHE 329 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWEL-AAELPEIHRAAAESWMAQGFPSE 359 + R+ F + YHPLF FL R + L + R AA G + Sbjct: 330 LTRKNYFTTAHYQKETIYQYHPLFREFLLSRARDSFDTGRLSAMQRKAAALLGKSGQIED 389 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALP 401 A + GD L + +HA SL L E + +P Sbjct: 390 AALLFINVGDWDGLIKLTCSHASSLIAQGRTKTLVEWITNIP 431 >UniRef50_C8XH94 Transcriptional regulator domain protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XH94_NAKMY Length = 990 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 154/358 (43%), Gaps = 29/358 (8%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-- 58 +++ KL RP + + R RL +L + RL L+ +P G GKTTL+++ AA Sbjct: 5 VVLTEKLRRPEPV--GLARRRLEEQLLAPSTSRLDLVVAPPGSGKTTLLARVAAAAESAG 62 Query: 59 --IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 +GWY + D + F ++L A+ +T A + + L + Sbjct: 63 SAVGWYRVTADDATESAFVAHLARALH---------LDTAADESSVTDMLELLDR----- 108 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 +P +V DD H I V ++ F++ +P +L ++V R P+L I LRV QL Sbjct: 109 -SPTAPTLVVFDDVHEIAGSVAERALDQFVQLRPPHLRVLVGCRRPPELNIPRLRVSGQL 167 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 EI S L F E ++ F P+ ++ + GWA LQL L+ + Sbjct: 168 REITSDDLRFRSWEVEELFLSVFREPLSPESAAALTRRTGGWAAGLQLFHLATSGRSAVD 227 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 A G + + YL VL + RHFLL++ L ++ L + G Sbjct: 228 RGRAVDDLGGRSKLVRSYLARNVLAELPEERRHFLLRTCTLGTLTGPLCDALLGVTGSST 287 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 L+E+E + LF DD G F YH LR +W L + E A A W ++ Sbjct: 288 ILDELEHRQLFTS-SDDDGHTFRYH----EVLRTHLEWAL---VQEYGAAGAREWYSR 337 >UniRef50_Q46TL6 Regulatory protein, LuxR:Tetratricopeptide TPR_4 n=7 Tax=cellular organisms RepID=Q46TL6_RALEJ Length = 960 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 108/417 (25%), Positives = 183/417 (43%), Gaps = 21/417 (5%) Query: 16 TVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDIGWYSLDEGDNQQ 71 V RERLLA+L+ A R +I PAG GK+ + W D+ W +++ DN Sbjct: 61 VVARERLLAQLTEARRRRCIVIQGPAGCGKSAALMAWRLELLGLGFDMAWLTVEPEDNDL 120 Query: 72 ERFASYLIAAVQQATNGHCAICETMAQKR-QYASLTSLFAQLFIELAEWHSPLYLVIDDY 130 R+ L+ + + +A + + L +A L LV+DD Sbjct: 121 ARWLDRLLGCLSDVSPAITREAMLLAGRGLDDEGVERTIIALVRGIAACPRELTLVLDDL 180 Query: 131 HLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQE 190 H IT + ++M++ + + P NL LV++SR L + LR + LLE+ + L FT +E Sbjct: 181 HHITELRVRDAMQWLVDYAPPNLHLVLVSRAALPLSLGRLRDQGLLLELDQRDLRFTAEE 240 Query: 191 AKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALS-ARQNTHSAHKSAR----RLAG 245 ++QF +L I ++ + + GW LQL A R+ H + S R Sbjct: 241 SRQFLAAQLGD-IAPRDARMLHELTDGWVAGLQLFATHWKRKRQHDSGISFATDLVRANV 299 Query: 246 INASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE------ 299 NA + Y EVL + L+++A + +L ++ E Q E Sbjct: 300 QNAGAFAGYFEREVLSRLAPDEAELLVRAAACERFSASLCAALS--EGSQTEAEVLTLLA 357 Query: 300 EIERQGLFLQRMDDTGE--WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 +E + LF+ ++D+G W+ HPL L +R + + +H AA + + Sbjct: 358 RLESENLFIAPVEDSGRETWYRLHPLLRQTLAERFRARSERQQGGVHTAAWQWFRDHRML 417 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 EA+ HA+ AG+A D + A +L E+ L+ LP + + + +L +L Sbjct: 418 EEAVRHAILAGEAGTAADFVERFATTLMARGEIRKALVLLRLLPAEQIQQRIELRML 474 Score = 42.4 bits (98), Expect = 0.086, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 34/52 (65%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 L+ RE V+ L+ N++IA L ++ T+K H+RN+++KL V+ R +AV Sbjct: 897 LSDREADVVRLLAQALPNKKIARTLGLSPETVKWHLRNIFRKLNVSSRDEAV 948 >UniRef50_Q0K482 Transcriptional regulator, LuxR-family n=2 Tax=Ralstonia eutropha H16 RepID=Q0K482_RALEH Length = 1290 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 106/428 (24%), Positives = 194/428 (45%), Gaps = 19/428 (4%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIG 60 +K+ P + RE L+ +L A R +I AG GKT+ + W D+ Sbjct: 394 TKVLPPRGARQLMPREALMGRLLDARRHRCVMIHGQAGSGKTSTLMAWRKAMISLGYDVC 453 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIE-LAEW 119 W SL DN+ RF YL+A++ +A + + L+A ++ LA Sbjct: 454 WLSLAAEDNEPARFLDYLLASIAEADPAAAREASQVVAAGHDEAEIELWAITLVQGLARR 513 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L L+IDD H +++P I ++++ + + P L + + SR L + LR+++QL E Sbjct: 514 QRELVLMIDDLHHVSDPAILLALQWLLEYAPPQLHVALASRTALDLSMERLRLQNQLAEF 573 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L F+ +E+ ++ +L + I ++++ + + GW LQL A+ R ++ Sbjct: 574 DMRDLRFSPEESARYLRDQLGN-IPGSDAAALHELTDGWVAGLQLFAIGLRTRQAGSYPV 632 Query: 240 AR-RLAGINASHLS-DYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG--- 294 + R A AS + LV D++D+ TR AI + L + G+ + Sbjct: 633 TQVRDARAFASFFEREVLVRLAPDDLDMLTR-----VAICQRFCVPLCAEILGQPDAVAG 687 Query: 295 -QMRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW 351 + R+ + LF+ + D W+ HPL L AE+ +H A + Sbjct: 688 IKARVTRMVADHLFITVVGSHDNETWYRIHPLLRETLLGYLAARDEAEIRALHATAWRWF 747 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 A+G EA+ HA++AG+ ++ A +L ELS + L+ LP + + + +L Sbjct: 748 DARGHLDEAVLHAVSAGEPDAAAKLVEGRAQALLVGGELSQVAGLLRMLPQEQVRRSFRL 807 Query: 412 VLLQAWLM 419 + A+++ Sbjct: 808 HVAHAYML 815 >UniRef50_B8FZ91 Transcriptional regulator domain protein n=8 Tax=Clostridiales RepID=B8FZ91_DESHD Length = 969 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 106/388 (27%), Positives = 184/388 (47%), Gaps = 42/388 (10%) Query: 9 RPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGD 68 RP + + R RLL K++ +L I + AGYGKTTL+ Q+A G++D+ W +LD D Sbjct: 5 RPKATEALLQRPRLLDKIALPGT-QLTYIHADAGYGKTTLLLQYAKGRDDVVWMALDGKD 63 Query: 69 NQQERFASYLIAAVQQAT---NGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 + F +L +++++ H A +A++ + + L + S L + Sbjct: 64 REPIFFLQHLESSLKEKLIQFEFHATDYIPFAGSDTFAAV--VLSALLKAIGS--SVLTI 119 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 + DD H+IT+ + + + +++ P NLTL++ SR+ + L++ +++E+ + L Sbjct: 120 IFDDVHVITHHQLTDLLTEWVKSSPPNLTLIMASRHELWSSLFRLKIAGEVVELTKKDLC 179 Query: 186 FTHQEAKQ---FFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 F +EA++ FFD EAA S+ GW A+Q L+A N + Sbjct: 180 FNQEEAERLWGFFD-------EAAYSA-----TEGWTLAIQSYRLAAEGNKEFS------ 221 Query: 243 LAGINASH-LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 LA ++A +S YL +E+ + TR FL ++ L + + ++ Q LEE+ Sbjct: 222 LARLDADRDVSRYLFNEIFMGITEETRDFLKATSRLPELEVQGCNYLLNIKHSQKILEEL 281 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQ---WELAAELPEIHRAAAESWMAQGFPS 358 + LF+ R T + YH LF NFL+Q + WE+ +H+ A +S G Sbjct: 282 MHRNLFILRTSTTS--YRYHTLFRNFLQQNDEGRGWEI------LHK-AKDSCYGSGDYG 332 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFN 386 A +AL D ++ L A F Sbjct: 333 RAAEYALLVEDEKIVHACLSAMAGEFFT 360 >UniRef50_C1TP26 ATP-dependent transcriptional regulator n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TP26_9BACT Length = 833 Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 204/932 (21%), Positives = 360/932 (38%), Gaps = 153/932 (16%) Query: 7 LSRPVRLDHTVVRERLLAKLSG--ANNFRLALITSPAGYGKTTLISQWAAG-KNDIGWYS 63 S P T+ R+R+ A L N R I +P+G+GKT IS+W + +N + W + Sbjct: 7 FSPPKYGTQTIYRKRMGAFLDKNIIQNKRWVYIEAPSGFGKTVSISRWISPLRNKLAWIN 66 Query: 64 LDEGDNQQERFASYLIAAV---QQATNGHCAICETMAQKRQ--YASLTSLFAQLFIELAE 118 L D+ ERF L+ A+ Q++ E+ R+ Y S++SL Sbjct: 67 LSIDDDVPERFVHKLVKAMAFAQKSNRKLAKAAESTGPPREVLYRSVSSLLDN------- 119 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 +V+DD+ I++ E + + TL +LSR P ++ + + Sbjct: 120 -DKNYVVVVDDFQHISDNETLEILSELAINPSFRFTLCILSRKGPPKELSPSILNGNMAL 178 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + + L +E + +S + + GW A+ N++ Sbjct: 179 MTEEYLVMDEEEISSMM---TKHHMSRRKSEEVISETKGWPVAV---------NSY---- 222 Query: 239 SARRLAGINA--SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 L G S L DYL V D R F++++A +++ + + G N + Sbjct: 223 ----LMGDEGDWSLLDDYLDSRVWDRWPEEVREFMVRAAPCPRLDEDICRSLNGSRNYEP 278 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQG 355 L+ I FL+ +D G + P F +L +R +L+ + + EIHR + +G Sbjct: 279 LLKHIRSSDAFLENSEDGG--YSIFPPFREYLLRRMNSQLSKDRIDEIHRYLGRIFFDEG 336 Query: 356 FPSEAIHHALAAGDALMLRDILLN-----------HAWSLFNHSELSLLEESLKALPWDS 404 L A D L +R + L+ + + HS +E + L Sbjct: 337 -------DYLVAAD-LYVRCLCLSGLSDCCTAMTKYRKEISVHSRFRFFKE--RVLGRIK 386 Query: 405 LLENPQLVLL-----QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVA 459 E+ L LL +L + R+ E+ +L + D + L ++ Sbjct: 387 FTEDEGLPLLAQSAFMYYLDGNAERFTEIMDMLYKRAERCGDGPFASFLTLLKVLDFRIP 446 Query: 460 IN-------DGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALM 511 +N DG + + + P PG F + + ++ L + +L S+ + Sbjct: 447 LNLYLERVIDGKETPT---SSICFGKSPSPGTFTANM---PLMHRSLRERSDLALSMEEL 500 Query: 512 QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 571 +T MAR + L + Q I+ + + A L + HLE+ H Sbjct: 501 HKT--MAR----YREPLKKFLGQDHIILREC---------QFAGVLYEQNHLEEAYHHA- 544 Query: 572 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ 631 V + ++ R D S I +L + + + A +I C + R Q Sbjct: 545 -VEAQTVVMKVNCRRDVRFCSDMILIHILKAMGRRDE----ASMIACEMER--------Q 591 Query: 632 LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ- 690 +NR +D I N R ++GD AA WL + N LQ Sbjct: 592 INR--------DRANDLIPNLKAWRFRERMVSGDGTAAEEWL-----ISYGENPILQPDL 638 Query: 691 ---WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL------LLLNQLYWQA 741 +R+ + L+ +PA VL + LRL D NR + +LL+ YW Sbjct: 639 YDIYRHFTTERALIASGKPALAVL----FGEKLLRLSQDFNRPMDELESYILLSTAYWST 694 Query: 742 GRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 801 ++ + + AL LA G++ F+ E ++ + ++ R + R Sbjct: 695 DDRTRSYEYIEKALALAEPYGYVRMFLDEALSIKPMMVSFLR----------RTKSDGRR 744 Query: 802 INQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELE 861 I+ FA V VP L TS L++R+ ++L L+ S IA +L Sbjct: 745 IS-----GFASEVALAVTGTSYEDVVPSLEETS-LSERQMRILALLKGNGSYRDIAEDLG 798 Query: 862 VAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 +A +T K H+ LY+ LGV++ +A++ A+ + Sbjct: 799 IAHSTAKYHVTRLYRFLGVSNGAEALRKARSM 830 >UniRef50_A1TX00 ATP-dependent transcriptional regulator-like n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TX00_MARAV Length = 756 Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 94/343 (27%), Positives = 155/343 (45%), Gaps = 20/343 (5%) Query: 34 LALITSPAGYGKTTLISQWAAGKNDI-GWYSLDEGDNQQERFASYLIAAVQQATNGHCAI 92 L+++PAG+GKTTL+SQW + + W +LD DN F + + +A+ + N AI Sbjct: 3 FVLVSAPAGFGKTTLVSQWLEQEKPVHAWLTLDHRDNAPALFWNAVASALAR-VNPRFAI 61 Query: 93 CE-TMAQKRQYASLTSLFAQLFIELAE----WHSP--LYLVIDDYHLITNPVIHESMRFF 145 E T+ + + L LA+ W +P L LV+DD+HL+ P + E +R F Sbjct: 62 RESTLLSALEPGAAVDPITMLVNRLADYSRTWQAPSRLILVLDDFHLLDQPALLEQVRRF 121 Query: 146 IRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEA 205 I P L +V +SR P + A L R Q++ +G + L F ++F R + + Sbjct: 122 IDFAPGFLRIVCISRLDPPIRTAQLLARQQMVRLGPEVLRFDLALTRKFVQARRAD-LSE 180 Query: 206 AESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDL 265 + ++ GW ALQL ALS +H + G LSDYL++EV ++ Sbjct: 181 EQMLQLHQRTGGWPAALQLSALSENPLSH--------VPGPGQRALSDYLLEEVFAGLEP 232 Query: 266 ATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFG 325 + FL ++L + + + + + + L Q + W+ H L Sbjct: 233 GLQGFLQDMSLLPLFSHEVADEARNGSDAADWIAAMRERNLLFQSYGEGHYWYRLHDLLI 292 Query: 326 NFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAG 368 ++L + Q I AAE++ +G EA+ LA G Sbjct: 293 DWL--QAQDREPERESSIRIRAAEAFRQRGLIVEALELFLAEG 333 >UniRef50_B5EC60 Transcriptional activator domain n=1 Tax=Geobacter bemidjiensis Bem RepID=B5EC60_GEOBB Length = 1055 Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 108/415 (26%), Positives = 177/415 (42%), Gaps = 18/415 (4%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG-WYSL 64 K++ P V RERL L A+ + I+ P G GKTTL+S + + WY Sbjct: 5 KITAPGLAAGIVHRERLFQVLDHADK-PVRWISGPGGSGKTTLVSSYLETRGIPALWYQA 63 Query: 65 DEGDNQQERFASYLIAAVQQATNGH-----CAICETMAQKRQYASLTSLFAQLFIELAEW 119 D+ D+ F Y+ A Q + + E +A + ++ F QLF +L Sbjct: 64 DQSDSDPATFFYYMGLAFQDSVSPDREPLPLLTPEYLAGLKTFSR--RYFQQLFAQLP-- 119 Query: 120 HSPLYLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 +P +VID+Y I HE + + P+ +T++ SR P + + Sbjct: 120 -APYAIVIDNYQEIPAGSPFHELIAEGLAQCPDGITVIATSREEPPAVLTVNETAARFAF 178 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 +G L F+ EA++F + SS IE + + GW L LI S T Sbjct: 179 LGWSDLRFSFDEAREFAGTQTSSHIETEALASLYAKTDGWIAGLLLILESLDGGT----L 234 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + L + + Y D++ + D ++FLLK+A++ + + R+TG + + L Sbjct: 235 DQKLLQELPLDKVFVYFADKIFEARDGELQNFLLKTALVPGITAQMAERLTGIGSSEQIL 294 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWEL-AAELPEIHRAAAESWMAQGFP 357 + R F + + YHPLF FL R + L AAEL EI R AA Sbjct: 295 SRLCRNRFFTAKSSPADPVYQYHPLFREFLVARAEGTLPAAELREIRRQAASLLKGADRA 354 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 +A A D + +++L+ A L + L+++P +S+ NP L+ Sbjct: 355 EDAAGLLTEASDWDGVAELILDCAPLLAAEGRSETVRGWLESVPAESVAVNPGLL 409 >UniRef50_C7Q4U6 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q4U6_CATAD Length = 935 Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 109/422 (25%), Positives = 201/422 (47%), Gaps = 27/422 (6%) Query: 9 RPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-----DIGWYS 63 RP RL + R+ L+A+L A ++ +IT+PAG GK++L+ WA ++ I Sbjct: 19 RPNRLP-LIARDGLVAELDQAAAGKVTVITAPAGSGKSSLLRAWADRQDRQHRLAIVQVP 77 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 D+ D Q F L+ V++ +G + A ++++ T++ ++ +LAE + Sbjct: 78 RDQPDGQL--FWLSLLTTVRR-LSGEPIAADPPAAAPEFSAATAV-ERILEKLAEIPERV 133 Query: 124 YLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQ 183 L+IDD H +T P + + P+++++++ +R L + LR+ QL ++ + Sbjct: 134 SLLIDDVHELTAPETFADLTRLLADLPDHVSVILATRRNLPLRLHRLRLTGQLTDLRAAD 193 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L F+ E + + A +R+ + GWA L+L LS + H R Sbjct: 194 LRFSEDETRALLAAS-GITLSDAGVARLLERTEGWAAGLRLAVLSL-----TGHPDPERF 247 Query: 244 A---GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 G + +++YL+ E+L+ + LL+++IL ++ L +TG + L + Sbjct: 248 VAEFGGSNRTVAEYLLAEMLERQPQDIQDLLLRTSILTRISGELADALTGRVGSEPILLD 307 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPE----IHRAAAESWMAQGF 356 +E F+ +D WF YH LF + L Q EL P+ +HR AA+ + G Sbjct: 308 LEDANAFVVSLDAERTWFRYHHLFADLL----QLELRRVHPDEGRGLHRRAADWFAEAGM 363 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 EAI H AAGD ++ +HA+ + +L ++ L+A P + P L +++A Sbjct: 364 TVEAIRHTQAAGDWSAAANLFSHHAFGMMLDGQLETMQSLLEAFPTGPAADLPALSVVRA 423 Query: 417 WL 418 + Sbjct: 424 MV 425 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 7/78 (8%) Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 + P VPEL T E ++L + + S QIAGEL V+ TI TH+R++Y KL Sbjct: 862 DQPAVPELSPT------ELRILRYLPTNMSRPQIAGELSVSVNTISTHVRSIYAKLQATD 915 Query: 883 RQDAVQHAQQLLKMMGYG 900 R AVQ A++ L+++ G Sbjct: 916 RASAVQRARE-LRLLAAG 932 >UniRef50_Q5P612 Putative regulatory protein, LuxR n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P612_AZOSE Length = 895 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/354 (24%), Positives = 161/354 (45%), Gaps = 12/354 (3%) Query: 21 RLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDIGWYSLDEGDNQQERFAS 76 RLL +L L ++TS AG+GKT+L+ QW A + W ++D D+ F Sbjct: 31 RLLERLRETAEQPLVVVTSLAGFGKTSLLVQWRRELLATGAAVAWLTVDASDDSAT-FIP 89 Query: 77 YLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNP 136 L+A+++ A G Q Q + + +++ +++ E P Y++IDD H +++ Sbjct: 90 ALVASIRVAV-GLDVPARAFDQLGQSGADLWIASEVLVQIHELARPTYVLIDDLHQLSDE 148 Query: 137 VIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFD 196 E + + IR+ P N +V SR P + L + ++ L + F Sbjct: 149 HAVEFVYYLIRNAPPNFHVVATSRADPPFPVEELNAHGLYTQFVTEDLRLRLDDTIGFLR 208 Query: 197 CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINAS--HLSDY 254 RL I+ +R+ + GW ALQ++ + + + A +AG++ + ++ Y Sbjct: 209 RRLGEDIDIETCARLHERTEGWPMALQIVTAAMARKSDIAGT----VAGLSGATGDIARY 264 Query: 255 LVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDT 314 VL++++ L++++IL++ + L ++G + L +E+ + + Sbjct: 265 FSQFVLESLEPDAVAMLVRASILKTQHPELCAALSGVADSGEILSRLEQNTGLVTSVGGD 324 Query: 315 GEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAG 368 G+ + HPLF +L A EL +H AAE + A +A HA AG Sbjct: 325 GDNYRMHPLFIEYLHSLLDALPAEELRVLHATAAEWFAAHNMLEQAADHAFVAG 378 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 12/111 (10%) Query: 795 AQRILREINQHHRHKFAHFDENFVERLLNHPE---VPELI---------RTSPLTQREWQ 842 A L E+++ K A FVER VPE R + L+ RE + Sbjct: 781 ALECLPELDRSGLAKGAGITPAFVERAAERCRFGWVPEATGQKTADPKNRPAQLSAREME 840 Query: 843 VLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 +LG + G SN++IA L+V A TIK H++NL KL A+R+ AV A+ L Sbjct: 841 ILGALSLGRSNKEIAKMLDVGAETIKWHMKNLLAKLNAANRRHAVDRARLL 891 >UniRef50_B8G4C3 Transcriptional activator domain protein n=2 Tax=Chloroflexus RepID=B8G4C3_CHLAD Length = 1163 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 113/430 (26%), Positives = 188/430 (43%), Gaps = 16/430 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG- 60 ++P K++ P ++R L A L+ + ++ +PAGYGKTTL++QWA G Sbjct: 17 ILPLKITPPPVRREEILRRDLQALLTEVRLLPVTVVVAPAGYGKTTLLAQWADQLTHTGA 76 Query: 61 ---WYSLDEGDNQQERFASYLIAAVQQ--ATNGHCAICETMAQKRQYASLTSLFAQLFIE 115 W D D + +YLIAA+++ T G A+ + + + L + Sbjct: 77 QVAWLGFDANDQEPALLLTYLIAAIRRLLPTAGEQALRLLQSLSSLKHNWPLVAGALLSD 136 Query: 116 LA-EWHSPLYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRN-LPQLGIANLRV 172 + E SP L++DD HL++ P+ E + + +R P NL +V+ SR L + LR Sbjct: 137 VQRELQSPAILMLDDVHLVSEGPITTELLGYLLRAAPPNLHIVMASRRPLTFTPLPRLRA 196 Query: 173 RDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALS-ARQ 231 LLE+G+ L EA + R+ + E + + GW ++QL + ARQ Sbjct: 197 EGGLLEVGASDLLLQRDEAVELL-ARVGVVLPDDELDLLLERTGGWMLSVQLAVRTLARQ 255 Query: 232 NTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE 291 + + LA N L +YL EVL + L+ +A+ +L+ G Sbjct: 256 TPEQRRRYLQGLA-TNQHDLFEYLASEVLGMLPSHLVDRLICTALFGQAIPSLLDEALGV 314 Query: 292 ENGQMRLEEIERQGLFLQRMDD--TGE-WFCYHPLFGNFLRQRCQWEL-AAELPEIHRAA 347 ++ LE+ GL L D +GE F +HPL+ L R + E+H Sbjct: 315 DDSAQLLEQAIDFGLPLTVETDGTSGERVFRFHPLWQRLLADRALLRFDRVFVRELHERF 374 Query: 348 AESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLE 407 + A+ H AA + + L +AW L + S+ L ++ LP D Sbjct: 375 GMTLARHDQIESALRHLAAAENPAAIAYALREYAWPLIDSSQRESLRNWIERLPPDVRER 434 Query: 408 NPQLVLLQAW 417 +P+L+ + W Sbjct: 435 DPELLHMYGW 444 >UniRef50_Q5YUK9 Putative transcriptional regulator n=1 Tax=Nocardia farcinica RepID=Q5YUK9_NOCFA Length = 872 Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 26/359 (7%) Query: 28 GANNFRLALITSPAGYGKTTLISQWAAGKNDIG----WYSLDEGDNQQERFASYLIAAVQ 83 G + R L+ +PAG GKT L + A +D+ W ++ N +R+ L Sbjct: 44 GPGSARALLVCAPAGSGKTVLAAHHAL-SDDVTRPPVWVTVTAELNDADRWWHRL----- 97 Query: 84 QATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMR 143 G C + + A T+ QL ++ P LV+DD HL+T+P++ + Sbjct: 98 ----GDCFGFDPTGPAGEPAGATAAAEQLLAAVSAGPGPRVLVVDDAHLLTDPLVLAGLE 153 Query: 144 FFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF---DCRLS 200 IRH P L +V+ R P + L + ++ +G+ L+F + C L+ Sbjct: 154 HMIRHAPPFLKIVLCGRFEPPIRWQALELDGRVTRLGAGTLSFDTAQIAAVLAQHGCELT 213 Query: 201 SPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH-LSDYLVDEV 259 E +++ D GW ++++A+ + ++ R LA A H ++D+L E+ Sbjct: 214 P----EELAQVTDITRGWPALVRIVAIYLAAHAEDRDRAVRVLA--RAPHAVADFLCGEL 267 Query: 260 LDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMD-DTGEWF 318 + + R F+ +++I S L + G + +ER +D + G W Sbjct: 268 IAALPEQVRQFVSETSIPASYTPELAEHLAG-PAAPSHIAYLERINFPFTSVDTERGRWI 326 Query: 319 CYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDIL 377 YHP+ + Q AA L E+HR A + G ++A H LA G +L D L Sbjct: 327 SYHPMVRRYFATELQRVDAARLGELHRQLAGWYTVAGMYTQAFDHVLATGSDELLVDFL 385 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 806 HRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAAT 865 H F H D F + + +H V + LT E +VL + +G + QIA +L V+ Sbjct: 783 HAGSFGHLD-RFADEIRHHLAVRRHLTGHSLTGTELRVLKHLPTGRTTSQIAADLGVSVN 841 Query: 866 TIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 T+KTH+R +Y KLG+A R DA+ A+Q Sbjct: 842 TVKTHLRGIYGKLGIASRADALTEARQ 868 >UniRef50_A0R2Z6 Putative serine/threonine protein kinase n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R2Z6_MYCS2 Length = 722 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 169/671 (25%), Positives = 279/671 (41%), Gaps = 54/671 (8%) Query: 2 LIP-SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI- 59 L P +K RP + R R L + G + + LITS G GK+TL +Q + Sbjct: 67 LFPVTKFQRPSGRAEHIRRTRCLEMIDGPHVTHV-LITSSGGNGKSTLAAQLLDRTDGAP 125 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATN--GHCAICETMAQKRQYASLTSLFAQLFIELA 117 W SL+ DN+ F + + A++ A G + E + A + + +L L Sbjct: 126 AWLSLERSDNEPGGFWTAFLIALRTALPEFGGGLLREIVGG----ADVDRVLVRLADTLD 181 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFI-RHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + + +V+DD H IT+ + + + + R P +V+ SR P L A L + +L Sbjct: 182 AEDTAVSVVLDDLHEITDVTVIRQLSWMLERIDPATCRVVMCSRTRPALPTAQLVMTGRL 241 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 + ++ ++F E ++ RL + ++ I GWA A+ L L+ R T + Sbjct: 242 AHLETEDISFDGAETRELLLERLGVALTPEQADEIAAGTDGWAAAIYLSGLALR--TGAT 299 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + + + + DY DE+L + FL + L L V + + Sbjct: 300 TEEVLQSLSVPDRRVQDYFADEILHAITPRQLAFLEGISFLDRFTADLCDAVRDATDSEE 359 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L E+ R +F+ R+D G W H F LR R A LP R AA+ MA Sbjct: 360 ILGEL-RGNMFVLRLDAIGFWQRLHHTFAAVLRARAAAAGNANLPLRQRRAADWLMAHDR 418 Query: 357 PSEAIHHALAAGD-ALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 EAI + + A D +R I + + + +E L LP + + +P+L L Sbjct: 419 IPEAIEYYVRAADYDDAVRVIAAEYPRFMNISPRGAAVERWLDMLPMELVTGSPELGL-- 476 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE--FNALRAQVAINDGNPDEAERLAK 473 AW + R GE L R E +K + + H++ + LR N G + A+ Sbjct: 477 AWAAVAGAR-GEAGELHRRIE-AVKPLSANDSHSQAIMDFLRG--CFNFGEVEAGRECAR 532 Query: 474 LALEELPP--------GWFYSRIVATSVLG---EVLHCKGELTRSLALMQQTEQMARQHD 522 + PP G Y+ ++AT V G EVLH +L LAL Q Sbjct: 533 SSFVMTPPTGIWYPMQGAVYA-LLATWVDGPTPEVLHVVEDL---LALESTEHQPIALAG 588 Query: 523 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 582 +W AL L+Q A G A ++ +A + EQ ++++P A+ Sbjct: 589 LW--ALRGLVQA-----AHGQCGAA-DSVRRAADIRREQRIDRVPQAANTWSSTARTHRL 640 Query: 583 WARLDEAEASARSGIEVLSSYQPQQQL--QCLAMLIQCSLAR---GDLDNARSQLN---- 633 +D+A A A +G EV++ P++ + +L++ AR G AR + Sbjct: 641 LGDVDQAAADALAGYEVVAGIPPERDAVGSVVPILVELVYARRLQGRTSEARRYADEAQR 700 Query: 634 RLENLLGNGKY 644 RL + G G++ Sbjct: 701 RLAGITGPGRF 711 >UniRef50_C5BYP8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BYP8_BEUC1 Length = 895 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 133/491 (27%), Positives = 219/491 (44%), Gaps = 38/491 (7%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFR-LALITSPAGYGKTTLISQWAAGKNDIGWYSL 64 K++ P R + T+ R RL A L A R ++ + +PAG+GK+T + WAA ++D+ W SL Sbjct: 32 KVTVPRRGEATIARPRLSAMLDDAVASRPVSHVAAPAGFGKSTAAAAWAADRSDVAWLSL 91 Query: 65 DEGDNQQERFASYLIAAVQQATNGH------CAICETMAQKRQYASLTSLFAQLFIELAE 118 D D R ++AA+ A A+ R L + L + Sbjct: 92 DPYDADPRRLYRGVLAAIATALADDELPAPLAAVLRPGVHPRDPEDAIDLLDGVLEALDD 151 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 PL LV+DD H + V +R + +++LSR+ L +L Sbjct: 152 LRRPLVLVVDDVHHVPPGVARPVVRAVLSAGLPTTNVLLLSRDASHLDGLDLDA-----T 206 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSP--IEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 + L FT A++ S P + A++ + D+ GW A+++ +L R + +A Sbjct: 207 VTGADLGFT---AEEIVTLSGSYPPGLTQAQAVSLHDETRGWPAAVRM-SLIDRPDRDAA 262 Query: 237 HKSA---------RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITR 287 + R + YL DEVL + A F+ ++ + +L Sbjct: 263 ERRGTPATPATTPARAVAAHDEAFGAYLHDEVLGALPRAVAAFVRRATTSTVITASLAIA 322 Query: 288 VTGEENGQMRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHR 345 +TG++ ++ L R+GLFL + D + + +H LF ++ R R + E A ++H Sbjct: 323 LTGDDGARL-LAATLRRGLFLTPLGRRDGEDVYRWHDLFASWCRSRLEHEDPALARDLHG 381 Query: 346 AAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAW-SLFNHSELSLLEESLKALPWDS 404 AA W A+ P E++ HALAAGD+ D+L+ A +L N LL E +ALP + Sbjct: 382 RAARFWGARHLP-ESVPHALAAGDSGAAVDLLVEGALEALLNGGAAELL-ELCEALP-PT 438 Query: 405 LLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKD---IREDTMHA-EFNALRAQVAI 460 ++ ++V +++ + R E +LL RA ++ D D HA L VA Sbjct: 439 ARDDARVVAIRSVAARMSGRRDEAASLLERARAQLADHDAGDADGSHALAVAMLETFVAG 498 Query: 461 NDGNPDEAERL 471 PD AERL Sbjct: 499 PSSAPDAAERL 509 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 36/55 (65%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 LT RE ++L + S + +IA L V+ T+KTH R +Y+KLG +R++AV+ A Sbjct: 833 LTDRELEILDGLRSSLTAAEIARSLFVSVNTVKTHQRAVYRKLGARNRREAVRLA 887 >UniRef50_Q0BZ97 Transcriptional regulator, LuxR family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZ97_HYPNA Length = 897 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 109/485 (22%), Positives = 201/485 (41%), Gaps = 45/485 (9%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 L+ SK++ P +L + R L+ +L L ++ +P GYGK+ L+S+W A Sbjct: 18 LLRSKVTPPRQLLSLIRRPDLIQRLETGAEGSLIMLEAPGGYGKSCLLSEWKDQSARQGA 77 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTS------LFAQ 111 + W ++DE D+ E F +YL A + H A +T L+S Q Sbjct: 78 KVCWLAIDE-DDDVETFIAYL------AYSAHIAGIDTAGSGLLNFELSSDGNPSQAIWQ 130 Query: 112 LFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR 171 + P+++V+DD+ ++ V + +R PEN TLV+ SR + + Sbjct: 131 FLARIERSGHPVHIVLDDFERLSPAVSRLVIPTLLRRLPENATLVIASRGAVDISTVDFD 190 Query: 172 VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ 231 R + +G L+F QE + + RL+ + R+ + GW ++L+ ++ Sbjct: 191 HRGLVTRLGPADLSFGLQEMTRLWKGRLTP----RQIERLSEWTEGWPVLIRLLLTASDM 246 Query: 232 NT----HSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITR 287 T H R +A + Y +++L +D FL ++++ + I Sbjct: 247 GTFDIRHIDEPGYRDMA------IPAYFEEKILSRIDWDLMVFLREASVFEEIPFDAIQE 300 Query: 288 VTGEENGQM--RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHR 345 V +++ RLE +E FL + + HP+ +LRQ + + Sbjct: 301 VLDQDDPDFWRRLESLE---AFLVPLSGERSGYRLHPMMREYLRQTLSEQQPGRYGALQV 357 Query: 346 AAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHA----WSLFNHSELSLLEESLKALP 401 AA + +G A+ HALAAGD +L +IL W E ++ LK Sbjct: 358 RAANWYSDRGNHVRAVKHALAAGDETLLIEILEQTGGIRLWLQEGLIEFRAIDRHLKP-- 415 Query: 402 WDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR--AEHEIKDIREDTMHAEFNALRAQVA 459 + + ++P L++ ++ + + L A H + +D + +R +A Sbjct: 416 -EIVQKSPTSALMRCVILMKSGKQSDAAALYDGIIARHRARIAADDLLSISSTVMRVMLA 474 Query: 460 INDGN 464 + GN Sbjct: 475 VYGGN 479 Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 41/68 (60%) Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 E P R S +TQ+EW VL ++ G +++QIA + V I+ H++N+Y KL RQ+ Sbjct: 824 EAPGGRRESIVTQKEWAVLRELHKGQTDKQIALTIGVTEHAIRYHLKNIYAKLNARTRQE 883 Query: 886 AVQHAQQL 893 AVQ A L Sbjct: 884 AVQRAAAL 891 >UniRef50_Q0BFD2 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=48 Tax=Burkholderiales RepID=Q0BFD2_BURCM Length = 955 Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 109/411 (26%), Positives = 173/411 (42%), Gaps = 30/411 (7%) Query: 36 LITSPAGYGKTTLISQW-----AAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHC 90 L+ +PAGYGKT+L++QW A G+ + W S DE D+ A L+ + QA C Sbjct: 106 LVQAPAGYGKTSLLAQWRRESLALGRA-VVWLSADERDD-----APRLLQGLVQAVRTGC 159 Query: 91 AICE-----TMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFF 145 A R LT+ A E+A+ L++DD + + +++ + Sbjct: 160 ARPGFGRLIAGGAARALEGLTAWLA----EVAQLSIDALLIVDDAERLPAAGL-DALTYV 214 Query: 146 IRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEA 205 + + P+NL ++V R +L Q G + L FT E R + ++A Sbjct: 215 LHNAPQNLRVIVAGRRGLDRAAGDLLAGGQCTLAGPEWLRFTLDETIALVGARFAQRVDA 274 Query: 206 AESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDL 265 +R+ + V GW LQL A++A + ++ LA D LV+ +L N+ Sbjct: 275 DACARLFERVDGWPLGLQL-AMAAMARSADPRQAVDALAA-RMDGTRDRLVELLLANLSA 332 Query: 266 ATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFG 325 FL +++I ++ +L + + RL + R DD+ +W HPL Sbjct: 333 DDTAFLTRTSIADRLHPSLCAALLDDAEAPDRLARLARDTPLFIASDDS-DWCRLHPLVR 391 Query: 326 NFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAG---DALMLRDILLNHAW 382 + LR R AAE +H AA A G EA HA AAG A L L A Sbjct: 392 DTLRDRLAAGPAAERSVLHGRAAAWLDAHGMTEEAARHAYAAGQVETAYALAQRCLEDA- 450 Query: 383 SLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLA 433 ++ + + L LP L + P L + AW + R+ E +A Sbjct: 451 --IKQGRINDVLDWLALLPDAELDKRPTLRIAVAWALALGERHVEAQRQIA 499 Score = 42.4 bits (98), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 P + + LT +E +L L+ SN++IA L V T+K H++NL+ KL + R+ V Sbjct: 883 PRAVPSVVLTPKERAILELLARSLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHVV 942 Query: 888 QHA 890 + A Sbjct: 943 RRA 945 >UniRef50_Q0SA69 Probable ATP-dependent transcriptional regulator n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SA69_RHOSR Length = 798 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 150/356 (42%), Gaps = 12/356 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG- 60 L+ ++ + P V R LL +L+ L+ PAG GKT L +QWA + Sbjct: 28 LLAARFAVPAAPKILVRRPGLLDRLTAGTRGPATLVAGPAGAGKTVLAAQWAREHTALPP 87 Query: 61 --WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W +++ GD F +Y++ A+ + G +R L +L LA Sbjct: 88 PVWLTVEPGDAPG-LFWAYVLEALHR---GGVLPVGVGRPERAEEVDHPLLVRLADALAA 143 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 P LV+D + + P I S+ F + H L LV+ +R P L + R + E Sbjct: 144 SRQPAILVLDQFDAASAPEIAASLHFVVTHAAGGLRLVLTTRTEPLLPLHRYRAHGDITE 203 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I + L FT E + I A + + + +GWA L+L AL+ +++T Sbjct: 204 IRNADLMFTPAEGELLLHSH-GLEISRAGVALLAERTAGWAAGLRLSALAMQRSTDPEAF 262 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 A + + ++DYL+ EV A + LL + I ++ L +TG + L Sbjct: 263 IGAFAA--DRTTIADYLLSEVFAAQPPAAQELLLCACITDRIHPELADLLTGRRDADWTL 320 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 + R FL+R++ + W+ HPLF LR P + RA A W A Sbjct: 321 ARLARAHAFLERVEGSA-WYRLHPLFAEVLRAHLSQRYPGLEPRL-RAQAARWFAD 374 >UniRef50_B4WXQ1 Transcriptional regulator, LuxR family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXQ1_9GAMM Length = 848 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 151/351 (43%), Gaps = 17/351 (4%) Query: 34 LALITSPAGYGKTTLISQWAA--GKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCA 91 L L+ +PAG GK+TL++QW A G+ + L D+ RF + + T Sbjct: 3 LTLLLAPAGAGKSTLLNQWQAQPGERHVVQMGLQRADDDPVRF----LRRFAEKTRAAVP 58 Query: 92 ICET---MAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRH 148 +T M +S+ L+ L + PL++V DD+ I + + + Sbjct: 59 AFDTSWFMPFDVSELPPSSIADSLYDALQQVALPLFIVFDDFQHIQSEETLSVIATLLAD 118 Query: 149 QPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAES 208 P+N+ L++ SR P ++ LR+ D++LEI + L E + +E Sbjct: 119 PPDNVHLIIASRTQPLFDVSRLRLDDKVLEISAVDLKVRRSEVSELNQRLGGEALEEQAL 178 Query: 209 SRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH--LSDYLVDEVLDNVDLA 266 + GW +++ L+ ++ + L NAS + DY VL + + Sbjct: 179 DHLMAITEGWVAGVKIALLAGIRS------GMQTLQDFNASQPEIMDYFGHAVLKGLPDS 232 Query: 267 TRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGN 326 R ++SA+L ++N L + ++E+ + LFL + + YH L + Sbjct: 233 ARTLFMQSALLDTVNAELGDEILQTRQSARLIDELTSRELFLVPVPGKPASYRYHALLRD 292 Query: 327 FLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDIL 377 FL+ R + E+ + IHR A ++ G +A+ HA GDA + + L Sbjct: 293 FLQARLKIEMPDCIVPIHRRATRYFIKTGNFEQAVWHAWRTGDAALFGNCL 343 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 38/57 (66%) Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 S LT +E ++ L+ SG SN QI+ V+ TT K H++N+Y KLGV++R +AV A Sbjct: 789 SVLTPKENEIFELLQSGMSNAQISECTGVSVTTTKWHLKNIYSKLGVSNRTEAVLRA 845 >UniRef50_A5V1C9 Transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1C9_ROSS1 Length = 1095 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 127/489 (25%), Positives = 205/489 (41%), Gaps = 28/489 (5%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDI 59 +L+P +L P + + R R+ L+ ++ + L+T+PAG GKT ++ +A G + Sbjct: 20 VLLP-RLEPPPQPARLIERPRIDGLLAAVADYPVTLVTAPAGGGKTVALTGFARHGGWPV 78 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W LD D A +L A + T G C + +L L Sbjct: 79 AWCRLDAADTPIS-LALHLATAFRPIT-GFDPSCFVTVHP------VDVLDRLINALTAL 130 Query: 120 HSPLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRDQLL 177 LV+DD H P + + I P L LV+ SR +P L + + R +L Sbjct: 131 GDETLLVLDDVHCADRRPELRVLIEHLIDRLPPRLHLVLASREMPSLAPLPTVAARGELY 190 Query: 178 EIGSQQLAFTHQEAKQFFD-CRLS-SPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 + QLAFT++EA++FF C L SP + + GW AL+ A + + Sbjct: 191 RLNRAQLAFTNEEAREFFAACGLPPSPYD----DELNTLARGWPLALRFFATARVDLGAT 246 Query: 236 AHKS--ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 H+ RL A L YL EVL ++ R +LL +A++R ++++ V + Sbjct: 247 QHEPILPERLLEHIAPQLDAYLAREVLGDLPFDLRTWLLGTALMRWIDESACAAVAELAD 306 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 + L+ IER LF++ + D Y PL + + EL IH + + Sbjct: 307 LHIDLKMIERHELFIETLPDGRS--VYQPLQAASFARLAEREL-PNWRSIHAQLGQYYAT 363 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 +G A HH LAA L A + + ++ L ++ +P D N L+ Sbjct: 364 KGDDHGAAHHFLAAAQWEEASAALSRMALAGVSGAQAVALLSWIEQIPTDH-RNNAALLE 422 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQ--VAINDGNPDEAERL 471 +A + RY + +AE + + M + ALR Q V I+ P A L Sbjct: 423 ARAIAERRLGRYAQALESYRQAEDRYRA--QGDMDGQVRALRGQAEVYIDTVQPAPAAVL 480 Query: 472 AKLALEELP 480 K A++ LP Sbjct: 481 LKRAMKLLP 489 >UniRef50_Q1NQI1 Transcriptional regulatory protein-like:transcriptional activator domain n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NQI1_9DELT Length = 1085 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 82/331 (24%), Positives = 141/331 (42%), Gaps = 19/331 (5%) Query: 10 PVRLDHTVVRERLLAKL-SGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYSLDEG 67 P D +VRERL L G + +A ++PAG GKT+L + + A + WY +D+ Sbjct: 12 PPGADDILVRERLFTLLDKGFSRQPVAWFSAPAGSGKTSLATSYLAARRLSCLWYQVDQR 71 Query: 68 DNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP----- 122 D F YL A ++A + + ++ + + F EL P Sbjct: 72 DGDPASFFYYLGLAGKKAAPRRRRPLPLLTPE-HLPNIPTFTLRFFEELYRRVQPGSPTK 130 Query: 123 --LYLVIDDYH--LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 +V+D++ +P+ R + PE + +++SR P +LR R+++ Sbjct: 131 GEFVIVLDNFQDAPPASPLADIVSRG-LSIMPEGVRAIIISRAGPPPAFVDLRARNRVCF 189 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALS-ARQNTHSAH 237 +G ++ F E + R + I + + +GWA L L S AR T SA Sbjct: 190 LGWDEIRFNRAETRDLIKAREPAKISRQATDELYAATNGWAAGLILFLESLARGGTDSAP 249 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + G + D+ E+L+ D ++FLLK+A M A+ ++T + Sbjct: 250 GN-----GFAREPIFDFFAREILEKSDEQLQNFLLKTAFFPKMTAAMAAKLTRNPDADRI 304 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFL 328 L + + F Q++ T + YH LF FL Sbjct: 305 LSGLHKNHFFTQKLTHTKPIYQYHALFREFL 335 >UniRef50_B9NI01 ABC transporter family protein (Fragment) n=4 Tax=cellular organisms RepID=B9NI01_POPTR Length = 1760 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 102/428 (23%), Positives = 185/428 (43%), Gaps = 49/428 (11%) Query: 1 MLIPSKLSR---PVRLDH-TVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW---- 52 M +PS++ P RL T +R+RL+ KL A + +L L+T+ AG+GKTTL++QW Sbjct: 266 MSLPSRILPKIVPPRLGSGTTIRQRLIGKLHAAGDRKLFLLTAGAGFGKTTLMAQWHHHL 325 Query: 53 -AAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQ 111 AG + W +L GD +F + L +A+ +A G M + L A Sbjct: 326 EQAGARVL-WVTLAAGDGTLPKFCAVLESALGRA--GVSVAPAKMVTTEDSSDEFDLAAA 382 Query: 112 LFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR 171 L LA+ YL+IDD+H + +P ++ L LV+ SR P L + L Sbjct: 383 LLDALAQAPGESYLMIDDFHHVGDPATVGLVQAMADAMLPGLHLVIASRTKPALRLGRLL 442 Query: 172 VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ 231 + ++ + +L F E + F R + + +I D GW ++L Sbjct: 443 AMEDVVAVDGAELLFNLDETEAFLXARPDVRLGPESAWQIHDITDGWPVGVRLA------ 496 Query: 232 NTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE 291 S + + D + ++LR + L VTG Sbjct: 497 --------------------SRAMCSQFPDG--------QTRVSVLRCFHADLAASVTGC 528 Query: 292 ENGQMRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAE 349 + L EI Q +FL ++ D W+ +HP+F +L +R + + + +H AA Sbjct: 529 ADAAGYLAEILSQHMFLLPVERRDGQRWYRFHPIFRTYLGKR-RASVGIDARPLHYRAAH 587 Query: 350 SWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 ++ +G +EA+ A+ + D ++ ++ + ++L + L+++ + L +P Sbjct: 588 WFIQRGRFAEAMRSAVLSDDLGLVTQLVDRALPPPHSLAQLGVFSRWLESVGCERLAGHP 647 Query: 410 QLVLLQAW 417 +L+ + W Sbjct: 648 RLLSMGTW 655 >UniRef50_A3JA10 ATP-dependent transcriptional regulator, MalT related, LuxR family protein n=2 Tax=Bacteria RepID=A3JA10_9ALTE Length = 970 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 209/917 (22%), Positives = 358/917 (39%), Gaps = 128/917 (13%) Query: 37 ITSPAGYGKTTLISQWAAGKN----DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAI 92 I P GYGK+ +Q + I W +L DN ERF L A+ Q H Sbjct: 119 IYGPCGYGKSAAATQALLASDFSSAHIRWVTLSAQDNAPERFLMLLAVALNQPEPSHSGA 178 Query: 93 CETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPEN 152 Q A+ A L P LV+D+ I+NP ++ + + P Sbjct: 179 FADGLQWLLAATERPDSASLL--------PQVLVLDNLDAISNPAALALLQQLVDNLPAQ 230 Query: 153 LTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRIC 212 L L+ +SR + +L ++++ +G +L F+ E +FF +S ++ + + + Sbjct: 231 LRLLGISRGPLAISTHSLELQNRFTSLGPDKLEFSRSEVFEFF----ASEVQQQKLTTVS 286 Query: 213 DD-----VSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLAT 267 D GW T L L R S + R A + + + +L D VL + A Sbjct: 287 VDNLYSLTEGWPTPLALY----RGELRSGRE---RKALQDTASVQRFLADAVLGHYTNAQ 339 Query: 268 RHFLLKSAILRSMNDALITRVTGEEN---------------------GQMRLEEIERQGL 306 + L A L +D L + Q+ + +GL Sbjct: 340 QFALRALAELDVFSDDLFASLADTTTELALSPSQTALAQATPIRVTLSQLVPSQAVERGL 399 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAA-----AESWMAQGFP-SEA 360 + M G W+ +PL ++L + P ++ +A W AQ SE Sbjct: 400 PAKLMAGRGRWYRLNPLLLDWL----------QTPALNGSAQRMLRVSEWFAQRRQYSEG 449 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 + +AL + D +R + + +L + + L ++LP +L NP+L L+ W+ Sbjct: 450 LKYALMSADVGQIRRMAAEGSEALLLGQDTASLLRLRRSLPATALAANPRLRLVFGWVHA 509 Query: 421 SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP 480 + + L+ EH K D AL+A +A G + A LA+ ALE+ P Sbjct: 510 IGGQCRQATDLV---EHLGKVETHDIPLGRIQALQAFIARGQGQVEPALVLAEAALED-P 565 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 ++V V L G + ++ ++ARQ ++ + I + Sbjct: 566 ELSVQGQLVTQLVRSSALCALGRFADARQASREAARLARQAGDTGSEALAVYAHARIELS 625 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL-----LWAWARLDEAEASARS 595 +G L+ E + + +++L + IR QL LW R + + Sbjct: 626 KGELRHT----EHLLRSSLDTAMQELARPARVGEIRLQLNLALVLWHQGRYQDVDR---- 677 Query: 596 GIEVLSSYQPQQ-------QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD- 647 + + + Q +Q CL +LI C ++ D A + + R E + + + + Sbjct: 678 -VLAVCTRQAEQTRDLGLLMAMCLRVLI-CR-SQSHFDEAFAWIARAERTMQSWQVDGEL 734 Query: 648 WISNANKVRVIYW--QMTGDKAAAA-----NWLRHTAKPE-FANNHFLQGQWRNIARAQI 699 ++ ++ W Q D+AA A + + PE F L + R + Sbjct: 735 YVPVLEALKASCWLAQRETDRAAQAMAKILPYRQAGYSPELFPTMPGLMDCLQ--VRIAM 792 Query: 700 LLGEFEPAEIVLEELNENAR-SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV--LLDALK 756 GE+ A L L R S+ + D++ +LL + L A KS AQ V L+ ++ Sbjct: 793 ARGEYGAARTRLNGLRAGYRDSVPMGVDIHMSLLDVALL---AREKSPAQAVKRLVSIVE 849 Query: 757 LANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDEN 816 LA + FIS F +L+Q ++ P L Q Q F Sbjct: 850 LAAKEHFISPF--------NELKQELE----PLLRQTFDQLPTGVFTDALVKLFGIKAAT 897 Query: 817 FVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQ 876 R++ VP P+++RE VL I G SN+++A +L ++ T+KTH R + Sbjct: 898 SATRVI----VP---LAEPISEREKGVLECIARGLSNQEVADKLHISLHTVKTHARRINA 950 Query: 877 KLGVAHRQDAVQHAQQL 893 KLGV R A+ A++L Sbjct: 951 KLGVKSRTQAIVRAREL 967 >UniRef50_Q46UJ4 Regulatory protein, LuxR n=2 Tax=Bacteria RepID=Q46UJ4_RALEJ Length = 1336 Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 157/605 (25%), Positives = 244/605 (40%), Gaps = 101/605 (16%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIG 60 +KL P + RE L+ +L A R +I AG GKT+ + W D+ Sbjct: 408 AKLLPPRHARKLLPREGLMNRLLDARRQRCVVIQGQAGAGKTSTLMAWRKALISLGFDVS 467 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SL DN+ RF L+A++ + A+ A + A Q I L + Sbjct: 468 WLSLAAEDNEPTRFFDCLLASLAEIDP---AMARDAAMQVGGAEDDDAIEQWVIALVQAL 524 Query: 121 SP----LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 P L L+IDD H IT+ I+ +++ + + P +L L SR+ L + LR + L Sbjct: 525 GPRERELVLMIDDLHHITDARIYRALQRLLDYAPPHLHLAFSSRSALSLALEALRAQGLL 584 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSS--PIEAAESSRICDDVSGWATALQLIALSARQNTH 234 EI + L FT +E+ +F + +L + P +AA + D GW LQL A+ R Sbjct: 585 TEIDMRDLRFTAEESARFLEEQLGTIAPRDAAALHALTD---GWVAGLQLFAVDLR---- 637 Query: 235 SAHKSARRLAGINASHLSD------YLVDEVL-----DNVDLATRHFLLKSAILRSMNDA 283 ARR A + + D + EVL D+++L TR S R D Sbjct: 638 -----ARRSADYPLTKVRDPRTFAAFFEREVLGLLAPDDLELLTR----MSTCHRFCAD- 687 Query: 284 LITRVTGEENGQM----RLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWEL- 336 L T + GE RL +E LF+ ++D D W+ HPL L R + + Sbjct: 688 LCTAMPGETETPSRIGDRLARLEADNLFITQVDTHDRDVWYRIHPLLRETLLARLETDKD 747 Query: 337 ------------AAELP--------------------EIHRAAAESWMAQGFPSEAIHHA 364 AE P E+H AA + +G +A++HA Sbjct: 748 DAADAVDMSDPDTAETPNDMADASRANDEPCAHGTARELHAAAWRWFDRRGHLDDAVYHA 807 Query: 365 LAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 + AGDA ++ +L EL L ++ LP + L L+ L ++L Sbjct: 808 VRAGDADAAATMVEGCGHALLKRGELPQLLGLVRRLPREQLQNRFGLLALVSFLQLYMRD 867 Query: 425 YGEVNTLLARAEHEIKDIREDTMHAEFNA-LRAQVAINDGNPDEAERLAKLALEELPPG- 482 + L R + R + +H LRA A+ +PD + AL +PP Sbjct: 868 VDGLGRSLERLDPLCD--RSNAVHQYVVCLLRAGHAVQVDDPDTVLGMLP-ALWAIPPEA 924 Query: 483 ---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW-------SLI 532 W+ +R +VL + +GE + L TE R+ V +L+ SL+ Sbjct: 925 DDLWWTAR---RNVLSWLFILRGEFDEARRLQDDTE---RRSSVPRSSLFGRYITAMSLV 978 Query: 533 QQSEI 537 + EI Sbjct: 979 MEGEI 983 Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 35/51 (68%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 L++RE ++LGL+ SN++IA L V+ T+K H++N+Y KLGV R A Sbjct: 1268 LSEREREILGLLAQAMSNKKIASVLNVSPETVKWHLKNIYAKLGVNGRGRA 1318 >UniRef50_A8L327 Transcriptional regulator domain protein n=1 Tax=Frankia sp. EAN1pec RepID=A8L327_FRASN Length = 1102 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 106/384 (27%), Positives = 174/384 (45%), Gaps = 28/384 (7%) Query: 3 IPSKLSRPVRLDHTVV--RERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDI 59 +P L+ VRL R RL L +R+ + +PAG GKTTL+ + A A Sbjct: 39 VPPILAARVRLPAPAGMHRPRLAGPLIVPAAYRVGTVVAPAGAGKTTLLVEVAQACAWPT 98 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W +LD+ + F ++L AA A + S+ + L L + Sbjct: 99 AWLTLDDRIGGLDSFLAHLHAAAAAAAG---------LPAGSWTSIENAIVDLDRHLTD- 148 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L +V+DD H + +++ + + P + ++V +R P L + LR+ Q+ E+ Sbjct: 149 --NLLIVLDDLHAVDGQPAEAAVQLLLDYLPPKVRVLVAARWRPNLDLHRLRLAGQIREV 206 Query: 180 GSQQLAFTHQEAKQFF-DC---RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 + L F E ++ F DC RL P E +R D GWA LQL L+ R Sbjct: 207 DADALRFRTWEVEELFRDCHGVRLR-PEEVTALTRSTD---GWAAGLQLFHLATRGR--P 260 Query: 236 AHKSARRLAGINASHLS-DYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 A + A+ L+G+ + L+ +YL VL V R FL+++++ + + + G Sbjct: 261 ASERAKILSGLGNTRLTREYLTMHVLSAVSADERDFLVRTSVFDRLTEKRCDSLLGRTGS 320 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELP-EIHRAAAESWMA 353 ++L E+ER+GLF ++D G + YH + L +R E E E+H AAA Sbjct: 321 GLQLAELERRGLF-TFVEDDGRTYRYHEVLRIHLLERLVLEHGEERAQEVHGAAARLCEE 379 Query: 354 QGFPSEAIHHALAAGDALMLRDIL 377 G +EA+ +GD +R +L Sbjct: 380 DGALTEALLSYCRSGDWEQVRRLL 403 >UniRef50_C5BYR9 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BYR9_BEUC1 Length = 840 Score = 95.5 bits (236), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 101/388 (26%), Positives = 160/388 (41%), Gaps = 22/388 (5%) Query: 19 RERLLAKLSGA-NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQ----ER 73 R RL A L A + L+++PAGYGKTTL+ WA G+ + W +D + Sbjct: 9 RPRLGAALDDAVTRAPVTLVSAPAGYGKTTLVRGWAVGRAGVAWLDVDASVARPLALFRA 68 Query: 74 FASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLI 133 AS + V+ G + A + L L L + P+ LV+DD H + Sbjct: 69 VASSVAGQVEPDAAGRLSQLARDAAREGSVPWADLLDGLVAALDDTCDPVVLVLDDAHRL 128 Query: 134 T--NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEA 191 P + + +R + L LV+L+R+ P L + LR+ L EI + +LA T E Sbjct: 129 GLDEPNV---LAHLVRIRHPALRLVLLARHDPPLALHRLRLDGALAEIRADELALTTDEV 185 Query: 192 KQFFDCRLSSPIEAAESSRICDDVSGW--ATALQLIALSARQNTHSAHKSARRLAGINAS 249 +P E ++ + GW A L +ALS R T A Sbjct: 186 AALLHAEALTPSE-DDARALGRATQGWPAAVRLAALALSGRAGTREITAPAE-----EGE 239 Query: 250 HLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQ 309 L YL ++VLD + F+L + + L + G++ ++ L E +FL Sbjct: 240 TLVGYLSEQVLDLLPDDVAAFVLDATTSDRVTGPLAASLVGDDGARL-LGECVHLAVFLD 298 Query: 310 RMDDTGEWFCY--HPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAA 367 G+ Y +F +R + A ++H AA W A P A+ HA+A Sbjct: 299 TDGSVGDDPAYRWQSVFARHVRALRRRTDPARSRDLHTRAARYW-APHDPRSAVEHAVAG 357 Query: 368 GDALMLRDILLNHAWSLFNHSELSLLEE 395 D + I+++ +W L EL L + Sbjct: 358 SDVDLAARIVIDRSWELMAAGELDTLSD 385 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 66/159 (41%), Gaps = 29/159 (18%) Query: 737 LYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQ 796 L AGR SDA R L A+ A G I F+ RA Sbjct: 695 LALDAGRPSDAHRGLELAITRAASIGSIRPFL------------------------ERAH 730 Query: 797 RILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSP---LTQREWQVLGLIYSGYSN 853 + + H AH E FV +L E R + LT+RE VL + S + Sbjct: 731 DLAAPLAAHLTRGTAH--EAFVVEVLARAEATGAPRPATPWDLTERERLVLSFLRSSMTA 788 Query: 854 EQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 +IA L + T+KTH R +Y+KLG R++A++ A+ Sbjct: 789 AEIAVSLSITLNTVKTHQRAIYRKLGATGRREALRLAES 827 >UniRef50_Q0B065 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B065_SYNWW Length = 954 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 106/478 (22%), Positives = 201/478 (42%), Gaps = 27/478 (5%) Query: 3 IPS-KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGW 61 IPS +L+ P +VR+ L+ + + +L I + AG+GKTTL+SQ+A + W Sbjct: 4 IPSARLTIPRAAVGEIVRKNLIDTVLNSPT-KLVYIHAGAGHGKTTLLSQFANSTEKVVW 62 Query: 62 YSLDEGDNQQERFASYLIAAVQQA-TNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 SLD G+N F + L AV+Q + E + + ++ L L + Sbjct: 63 LSLD-GENDIFTFINTLCEAVKQTFPEFDFSASEYLPFSEKNNFISMLAGALICSIENIS 121 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 ++DD H I + + + + I++ P N L SR P + +V+ ++ E+ Sbjct: 122 GDFVAIMDDLHTIEEDEVKKLITYLIKYLPNNAKLCFGSREAPWQDFLSFKVKGKITELT 181 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++LAFT +E I + I GW A++ + S Sbjct: 182 QKELAFTREEI---------VGILGFDDPAIYGSTEGWPLAIRSFQVLLENGI-----SI 227 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + L YL E + N++ FL KSA ++ ++ V ++N ++ LE Sbjct: 228 GDITSYGNETLYAYLFRECIANLNSDMVDFLKKSACFDVLDAQMLDDVLNKKNTRLMLES 287 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 + + +F + D ++ YH LF + L + + ++P + + AA + S A Sbjct: 288 LVSRNIFTIKTGDG--FYRYHALFRSGLLETGDKD---QMPLLRQKAARYYFDHKQYSRA 342 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 +A+ + D +L +I+L + L +AL ++ NP++++ + + Sbjct: 343 ARYAIDSKDDELLENIILACYRDYIKAGNYNELRIWFRALNDAAVELNPRILVAKGAFLS 402 Query: 421 SQHRYGEVNTLLARA----EHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + + L A + K++ + M + LR V+ + N E +AKL Sbjct: 403 VLGNFVQAKACLEAAIPLMNRDDKELYFEAMIHKARVLRNFVSFEESNRLLDELIAKL 460 >UniRef50_Q1LD93 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=cellular organisms RepID=Q1LD93_RALME Length = 855 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 121/506 (23%), Positives = 201/506 (39%), Gaps = 45/506 (8%) Query: 3 IPSKLSRPVRLDHTV-VRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 +PS P RL + +R+ LLA+L A + L ++ + GYGKTTL++QW + Sbjct: 5 VPSHKLMPPRLGGGIAMRDALLARLHEARHAALVVLAASPGYGKTTLLAQWRQQLVGARA 64 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 +GW SL + RF + + A+V G ++ ++ +L A L Sbjct: 65 RVGWLSLGPELDAPTRFCAAIAASVASVVQG------DVSPSSRHDPTEALIAALAAVPD 118 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 E LYL++D + + ++ I + L L + +R P L + L ++ Sbjct: 119 E----LYLMLDGAEYLRDTGAWAVLQALIDARLPRLHLALATRCRPALRLGQLGAEGVVV 174 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEA--AESSRICDDVSGWATALQLIALSARQNTHS 235 E + LAFT E + P E+ A S R+ + GW ++++A Sbjct: 175 EFDDESLAFTLAETRACL------PPESGQAASVRLMEATRGWPAGVRMLA--------- 219 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 R + + L Y + V + + L A L L VTG Sbjct: 220 ----GGRAPDDSRAALDAYWSEVVAPGLSVGQARLLRWLAWLDRWTPELAAEVTGVPRAA 275 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 + QG+F+ W HPLF ++LR+ A L +HR A +W+ G Sbjct: 276 ECARSLVGQGIFIGPARAHAGWHTLHPLFADWLRRSMPLAGADRL-ALHRRAVAAWLRVG 334 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 EA+ HA+ A D ++ ++ ++ S+L L + + +++ P L L Sbjct: 335 SSGEALDHAMRADDGGLVAHVVREAMPAMPALSQLRALPDWIDQAGVKHVVDEPALWLAA 394 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER-LAKL 474 AW R GE LA D + + +RA +A +P + LA+L Sbjct: 395 AWACTVAARLGEAERWLAMVAG------CDDVAPQVALVRASIAFQKDDPATMDVWLARL 448 Query: 475 ALEELP-PGWFYSRIVATSVLGEVLH 499 LP P + R G +LH Sbjct: 449 GGHALPHPSLEHIRAALAVRCGAMLH 474 >UniRef50_A5VE23 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VE23_SPHWW Length = 855 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 103/422 (24%), Positives = 176/422 (41%), Gaps = 45/422 (10%) Query: 19 RERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND----IGWYSLDEGDNQQERF 74 R+ L L+ A + +L+++ PAGYGKTT+++QW D + W + D + F Sbjct: 6 RDLPLRSLNVARSGKLSILYGPAGYGKTTILAQWRQDLIDQGLPVAWITAAREDGDPQAF 65 Query: 75 ASYLIAAVQQAT-----NGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDD 129 L+ A++ A G A + A +R ++ + L P +++D Sbjct: 66 LKVLMLALRDAGVDLGEAGLWASGDISAARRLEGAI--------LALERSGKPAVIIVDA 117 Query: 130 YHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQ 189 + + P + I P+++ LV+ SR P+L ++ R + IG +L F Sbjct: 118 FETVNEPSMDAMFADLIEMLPDHVHLVLASRQRPRLTLSTHLARGNVRLIGPDELRFNEN 177 Query: 190 EAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINAS 249 E Q L + + A++ + + + GW A+QL L A S+RR + Sbjct: 178 EMAQM----LGATVTASDLAALSERTGGWPIAVQLHQLWLASAPEGAELSSRR----PMA 229 Query: 250 HLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER--QGLF 307 L+ Y+ DEVL + A R L +I + L V E+ + LEEI GL Sbjct: 230 ELTQYMADEVLRTLTDAHRDLLTDLSIFPEIETNLADHVRQSEDSALLLEEISDLLPGLI 289 Query: 308 LQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAA 367 + + HPL + ++ + E HRAA W + EA++ A+ Sbjct: 290 ERHGAGIETSYRLHPLIADHAGRQLKTGRGREALLRHRAALWLWNDRRH-GEALNQAILG 348 Query: 368 GDALMLR---------DILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 D +LR +I L H L L+ LP SL ++P++ L +A + Sbjct: 349 HDNGLLRLFTETLPTLEIFLAHG--------TDELRAVLRVLPPGSLRQSPRIRLAEALI 400 Query: 419 MQ 420 + Sbjct: 401 LS 402 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 26/162 (16%) Query: 729 RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLP 788 + L+L + + + G + A R + +AL+LA ++ F EG A+ L ++ + Sbjct: 716 KALVLTSLAHEREGDRPAADRSMTEALRLAVDESVVAPFAEEGPALHPILERIAREEPTS 775 Query: 789 ELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIY 848 +L +H ++IL+ I+ +HP S LT RE ++L + Sbjct: 776 KLARH-LEKILQLISAS-----------------SHP--------SQLTDREAEILAHLA 809 Query: 849 SGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 G SN+ IA L + T+K H++N++ KLGVA R++A A Sbjct: 810 DGVSNKLIARRLALTENTVKFHLKNIFAKLGVASRKEAAACA 851 >UniRef50_A1RBQ1 Putative transcriptional regulator, LuxR family n=1 Tax=Arthrobacter aurescens TC1 RepID=A1RBQ1_ARTAT Length = 878 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 131/533 (24%), Positives = 214/533 (40%), Gaps = 42/533 (7%) Query: 2 LIPSKLSR-PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK-NDI 59 L P+ + R P+ L + R RL+AKL + LI +PAGYGKT L+SQW + + + Sbjct: 14 LKPTAVPRLPLVL---LARSRLVAKLD--DTADTVLICAPAGYGKTLLLSQWLEDQAHKV 68 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYAS----LTSLFAQLFIE 115 W S NQ R A L A+ QA AI RQ++ + L E Sbjct: 69 AWLS----PNQHNREA--LWPAMLQALRRSPAIPP--GALRQFSGDEEDAVEVLGDLAQE 120 Query: 116 LAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQ 175 LA + + LVID ++ + + + L +++R+ + R+ + Sbjct: 121 LASTGTSVRLVIDGVDGFSSDERERWIPALLNQSGPPIQLALVARDSTAVDAGPARLSGR 180 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 ++E+ S LAF+ +E + ++ + + +GW + L A + Sbjct: 181 IVELRSSDLAFSLEEIN-VLAAKTTTLTGMHQRRELFRQTAGWPACVVL----ALRYLRE 235 Query: 236 AHKSARRLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 A + L I A++ LSDYL ++ + RH L +++ R + A + G N Sbjct: 236 AADTEAPLGDIAANNRQLSDYLDHHIIRTLSGEERHVLSSTSVCRVVVAAQANTLAGHRN 295 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 L + ++ + F HPL F R + EL R AA+ W Sbjct: 296 AGSILSSLADDRDLVESAGSGRKVFLVHPLIRAFFRAELARKQPDELLRFSRIAAQ-WHE 354 Query: 354 Q-GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 Q G P + HA+ + D ++ ++L H SL E+ + ++ ALP + NP L Sbjct: 355 QAGEPEATLRHAMDSADNGLIGEVLERHGASLLGSGEVMQVRRAIAALPDAAFATNPTLC 414 Query: 413 LLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVA-----INDG---- 463 ++ A H T R R D + + L+A NDG Sbjct: 415 VVAAL----AHVESRQPTTATRYMAAANRTRADDLPPDLRELQALAKARLSWFNDGWEDQ 470 Query: 464 NPDEAERLAKLALEELPPGWFYSRIVA-TSVLGEVLHCKGELTRSLALMQQTE 515 +P A L +R+V+ T+ L E + E S ALM+ TE Sbjct: 471 DPQATADYAALRFSRQSDVRIEARMVSVTAALVEGKYGTAENEASAALMEATE 523 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 66/137 (48%), Gaps = 10/137 (7%) Query: 756 KLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE--QHRAQRILREINQHHRHKFAHF 813 +A RTG S + G+ + + LRQ L+ L L H +L E R Sbjct: 743 SMAIRTGRRS---LAGKILEEALRQADDLDVLRPLAIAPHEVIDLLVE-----RAGSYGP 794 Query: 814 DENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRN 873 E +RLL + R LT RE +VL L+ S S EQ+A EL ++ T+KTH+R Sbjct: 795 QETLAQRLLVLRPPTDARRAQALTPREREVLTLLPSHLSQEQMAAELHLSVNTVKTHVRI 854 Query: 874 LYQKLGVAHRQDAVQHA 890 +Y KLG R DAV A Sbjct: 855 IYSKLGAGSRHDAVAAA 871 >UniRef50_C0ZBC0 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZBC0_BREBN Length = 1068 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 130/579 (22%), Positives = 254/579 (43%), Gaps = 44/579 (7%) Query: 3 IP-SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIG 60 IP SK++ P + + + R L KL ++ LI + AGYGKTT ++ + + Sbjct: 6 IPISKITPPGQKPYVLRRPALAKKLRLLKYTQICLIHAGAGYGKTTSLATFLHDEALAAS 65 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAIC-ETMAQKRQYASLTSLFAQLFI----- 114 W+++ +GD+ F L+ +V+Q +G + E + + + + SL +++ + Sbjct: 66 WFTIQDGDDALLAFVLCLVESVRQVHSGFGQVLKEQLKDITEQSPVPSLDSKVLVDWFVG 125 Query: 115 ELAEWHSPLYLVIDDYHLITNPV-IHESMRFFIRHQPENLTLVVLSRNLPQLGIANL-RV 172 E + + LV+D + I N + + ++ P+ + LV+L+R+ P+ +L Sbjct: 126 ECVQLQADHILVLDHFQRIENGCEVDQFVQRLAEALPQKVKLVILTRSRPKWSNLDLLSA 185 Query: 173 RDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQN 232 R + LE+ + L+FT +E++ F+ + + + R+ + GW AL+ + Sbjct: 186 RGECLELTTNDLSFTLEESEAFYSDQYDITLSEEDWGRVEEVALGWVMALRTFGEMVTRG 245 Query: 233 THSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEE 292 + S R L S L L EV +D + FL+++A+L + ++ GE Sbjct: 246 -QTVPDSLREL-----SRLLHLLEVEVWTQLDAGMQRFLMEAAVLEQFDLEDCKQILGEG 299 Query: 293 NGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWM 352 + L E +R LFL D+ + +HPLF L + A + +++ AA + Sbjct: 300 CIE-HLLEAQRCHLFLHVQADSH--YSFHPLFQRLLSSKLAANQATYV-HVNQKAAGWYR 355 Query: 353 AQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 +G ++A ML + L + L +L L E + LP + Sbjct: 356 RKGDEAKAFRRLRLVEQWEMLGEWLCQASERLLQAGKLDFLYEWITLLP-------EHIK 408 Query: 413 LLQAWLMQSQHRYGEVNTLLAR--AEHEIKDIREDTMHAEFNALR-----AQVAINDGNP 465 Q WL+ Q L A+ A +E + + + R A+V ++ Sbjct: 409 CEQHWLLFYQGEVERYRCLYAKSFASYEQFLKQCEQKQDQIGLCRGLEGQARVHLDSVQG 468 Query: 466 DEAERLAKLALEELPPGWFYSRIVA--TSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 523 AE L K A++ LPP + + +L E+ +G+ ++ A ++++++ +Q +V Sbjct: 469 VRAEELLKRAIQLLPPFEQENEMAPRLYRLLAEIYTNRGDAKQAAAWYERSQELEQQTEV 528 Query: 524 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 562 +S +LF G LQ++ + E +Q+ +H Sbjct: 529 --------ELESRLLFRTGRLQSSIQLLESKWQVEQGKH 559 >UniRef50_C1RKJ7 ATP-dependent transcriptional regulator n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RKJ7_9CELL Length = 997 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 95/358 (26%), Positives = 150/358 (41%), Gaps = 27/358 (7%) Query: 28 GANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWYSLDEGDNQQERFASYLIAAVQQAT 86 GA L + + G GKTTL++ A A + W +LD + + +L Sbjct: 40 GAAAPPLVAVVAGPGCGKTTLLAHVAEAAGLPVAWVTLDPALDDPQVLLRHL-------- 91 Query: 87 NGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFI 146 H A C + + + + A L P LV+DD H + + + Sbjct: 92 --HVA-CAALPWRGPHEPWPTADAALAALGDGLAGPALLVLDDVHTAERRRAAQVVDLLV 148 Query: 147 RHQPENLTLVVLSRNL----PQLGIANL-RVRDQLLEIGSQQLAFTHQEAKQFFDCRLSS 201 RHQP L L + SR L P G+A RV D + L F E + F ++ Sbjct: 149 RHQPAGLQLALGSRGLHPGVPSRGLAGTARVVD------GEALRFRTWEVDELFRGHHAT 202 Query: 202 PIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLD 261 P+ AAE + + GWA L+L L+ R S+ AG + ++DYL VLD Sbjct: 203 PLPAAEVAELTQRTHGWAAGLELFHLATRDRPASSRTRLLERAGRGPA-VADYLAGHVLD 261 Query: 262 NVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTG--EWFC 319 + ++ R FL+++++L ++ + G + L R GL L +DD G + C Sbjct: 262 PLPVSLREFLVRTSVLGRLSAERCDALLGTDGAARMLAAAHRHGL-LTAVDDAGGTRYAC 320 Query: 320 YHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDIL 377 + + G L + A E+HR AA +A G EA+ + A D +R +L Sbjct: 321 HEVVRGYLLDTLAERAGGAVARELHRRAAALALAAGEHDEAVRSSCRAQDEDAVRRVL 378 >UniRef50_Q0K4A1 Transposase or inactivated derivative n=1 Tax=Ralstonia eutropha H16 RepID=Q0K4A1_RALEH Length = 588 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 5/234 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KN 57 ++ +K+ P + RE L+A+L + R +I AG GKT+++ W Sbjct: 356 VVGTKVLPPHGTGQLMPREALMARLMQSRRHRCVVIQGQAGSGKTSVLVAWRKAMISFGY 415 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 D+ W SL DN RF YL A++ ++ + + +L L EL+ Sbjct: 416 DVCWLSLSVEDNDPARFLDYLFASIAESAPTVAGKVQEVGAGHDGETLELRIIALVQELS 475 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 L L+IDD H +++ I +++ + + P L + V SR +L + LR+++ L Sbjct: 476 RRTRDLVLMIDDLHHVSDSRILRALQLLLDYAPPQLHVAVASRTALELSMERLRLQNLLA 535 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ 231 E + L F+ +E+ +F RL S I A+++ + + GW LQL+A+ R+ Sbjct: 536 EFDMRDLRFSPEESARFLLDRLGS-ITPADAAAMHELTDGWVAGLQLLAIGLRK 588 >UniRef50_Q5Z0N1 Putative transcriptional regulator n=1 Tax=Nocardia farcinica RepID=Q5Z0N1_NOCFA Length = 863 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 91/383 (23%), Positives = 153/383 (39%), Gaps = 43/383 (11%) Query: 29 ANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNG 88 A + R+ L+++PAG GKT L++ WA + D+ + + D + AT Sbjct: 69 ARSGRVLLVSAPAGAGKTVLLADWATRRCDLAVHWVGAADEFTAAADPAAAVRARLATT- 127 Query: 89 HCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRH 148 +P L++DD HL+ +P + F+ Sbjct: 128 --------------------------------TPGVLILDDAHLLDDPAALAGLERFLLE 155 Query: 149 QPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAES 208 P LT+VV +R P + L ++ +L +G+ +LA T +E ++ A Sbjct: 156 APPELTVVVCARFDPPIRWHLLELQARLTRLGAAELALTPEEISGLC-AEHGVTLDEAGR 214 Query: 209 SRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH-LSDYLVDEVLDNVDLAT 267 + + + GWA +++ A+ +AH+ + H + DYL E+LD + Sbjct: 215 TALSELTGGWAALVRITAVHL-----AAHRDELAVLATRLPHAVVDYLGAELLDGLSPTL 269 Query: 268 RHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGE-WFCYHPLFGN 326 R FL + + + + L + G G L+E++R G L R E WF YHP+ Sbjct: 270 REFLTVTGVPATFTEKLADDLVGGGAGHC-LDELDRLGFPLVRTPRGTELWFSYHPMLRA 328 Query: 327 FLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFN 386 R + +H AA A G A+ H AAGD L D + +L Sbjct: 329 HFRAEADRLGRDRIRALHLRAARWLHAAGHLPAALTHLCAAGDRAPLLDFVTAAGPTLVL 388 Query: 387 HSELSLLEESLKALPWDSLLENP 409 S+L L D +L++P Sbjct: 389 DGAGSVLFAELTRTAND-VLDDP 410 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 43/79 (54%) Query: 814 DENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRN 873 DE FV R+ +P I LT E VL + +G + QIA +L V+ T+KTH+R Sbjct: 781 DEPFVARVRANPAARREIARPALTDTELLVLKQLPTGRTVGQIAADLGVSINTVKTHLRG 840 Query: 874 LYQKLGVAHRQDAVQHAQQ 892 +Y KLG R A+ A++ Sbjct: 841 IYGKLGANSRVGALDTARR 859 >UniRef50_C0ZTT3 Putative LuxR family transcriptional regulator n=1 Tax=Rhodococcus erythropolis PR4 RepID=C0ZTT3_RHOE4 Length = 857 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 88/358 (24%), Positives = 151/358 (42%), Gaps = 25/358 (6%) Query: 28 GANNFRLALITSPAGYGKTTLISQWA------AGKNDIGWYSLDEGDNQQERFASYLIAA 81 G+ + L+++PAG GKT L++ WA + D+ W +L E DN L A Sbjct: 13 GSGPGSVGLLSAPAGAGKTLLLANWAREYSRASPDVDLAWLTLAERDNNVSVLCESLAEA 72 Query: 82 VQQATN--GHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP-LYLVIDDYHLITNPVI 138 + + G + + + + F E E H L++DD H + +P+ Sbjct: 73 ISTPLDPAGRAPTGQGFPAQAGSSRPVEQWLAHFAETVEAHDRRTTLILDDVHTLHDPMS 132 Query: 139 HESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF--- 195 + + H P+NL+++V +R P L L + +L S LAF E F Sbjct: 133 IGLLDQILTHTPDNLSIIVAARYEPPLTWHRLALDGRLTRFASTDLAFDRTEITAMFGEY 192 Query: 196 DCRLSSPIEAAESSRICDDVSGWATALQLIA--LSARQNTHSAHKSARRLAGINASHLSD 253 D L E + + + GW ++L A L+ R + A ++D Sbjct: 193 DITLGDD----ELAIVENFTKGWGAVVRLTAAFLAGRSDIGDALNEFTH----TPRPIAD 244 Query: 254 YLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMD- 312 +LVDEVL ++ F+L+++++ S + L +T + N + ++ + + + R D Sbjct: 245 FLVDEVLTSLPEHVTTFMLRTSVVDSFSAQLAETLT-DSNARSEIDALIQYNFPVTRTDS 303 Query: 313 -DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGD 369 D WF YHPL LR + E H AA + + F EA+ ++ GD Sbjct: 304 ADHTTWFSYHPLLLEHLRAEFRRVDHEERNRAHLRAATWFESHHFELEALELEVSIGD 361 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 2/84 (2%) Query: 811 AHFD--ENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIK 868 HF E F E++ N EL+ LT E+ VL + SG + E IA L ++ TIK Sbjct: 770 GHFGDQEAFAEQVRNRIRPQELVSAPILTPGEYTVLRELASGDTTESIADTLFLSVNTIK 829 Query: 869 THIRNLYQKLGVAHRQDAVQHAQQ 892 TH+R +Y+KL V++R+DA++ A++ Sbjct: 830 THLRGIYRKLEVSNRRDALKAARR 853 >UniRef50_D2PS65 Transcriptional activator domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PS65_9ACTO Length = 1068 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 90/333 (27%), Positives = 141/333 (42%), Gaps = 30/333 (9%) Query: 16 TVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFA 75 TV R RL A L RL + + AG+GK+TL+ WAA + WY++ D Sbjct: 8 TVARPRLTALLEEGVQRRLLTVVADAGFGKSTLLGSWAA-ERPCAWYTVRAEDRSLAAVV 66 Query: 76 SYLIAAVQQATNGHCAICETMAQKRQYASLTS-------LFAQLFIELAEWH--SPLYLV 126 S L+ ++++ + Q + + +A + E E + + L LV Sbjct: 67 SGLVESLRRQVPALSTVLTAELQGPRGPDADAEQETRALAYAAVLAEALEQNLTADLVLV 126 Query: 127 IDDYH-LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 +DD H L + +R P L LVV SR GI LR R Q+LEI + LA Sbjct: 127 LDDLHELAAGDPAARLIEGLVRIAPPALHLVVASRTAVPFGIDRLRGRGQVLEIDATALA 186 Query: 186 FTHQEAKQFFDC-------RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 FT E + L+ P++AA V GW A++L + R + + + Sbjct: 187 FTVPETVEVLRVVLGDGAEELAEPLQAA--------VQGWPAAVRLAVEALRTVSAAERR 238 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 S R A + L DYL +EV A R + A+L + L + ++ + L Sbjct: 239 SRLRRALRSDGPLYDYLAEEVFAAQPAAVRRLVAAVAVLPRFSSGLCEAIGLSDSADI-L 297 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQR 331 +++ +GL + D E +PL +F R R Sbjct: 298 QQLRTRGLLVSAGDADYE---LNPLVRDFARDR 327 >UniRef50_C0QDB1 MalT n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDB1_DESAH Length = 1102 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 96/423 (22%), Positives = 181/423 (42%), Gaps = 37/423 (8%) Query: 17 VVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYSLDEGDNQQERFA 75 V R RLL L+ + R+ L+T A GK+TL++ + ++ D W L + Sbjct: 15 VPRTRLLNLLADHGHCRIFLVTGQAAQGKSTLVASFLDREHQDCLWCHLTPEASDHTTLF 74 Query: 76 SYLIAAV---------QQATNGHCAICETMAQK---------RQYASLTSLFAQLFIELA 117 +I + +Q G + + Q RQ +L+ +F Q+ Sbjct: 75 DIIINGIHQLFQQRSDRQTDKGRKSQNIQIPQTTLGIRQDLLRQIETLSLIFEQI----- 129 Query: 118 EWHSPLYLVIDDY-HLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 PL LV+DD +L + + + P + ++SR LP L + ++ L Sbjct: 130 --DFPLNLVLDDMENLDDRGSAFALIEQLLANPPHGIRFFLVSRTLPPLNLPQFKINQTL 187 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 + ++ LAFT E FF R + + +I + GWA L L++ S R+ Sbjct: 188 FALNNEDLAFTLDETLAFF--RQKDTMIPEDIEKIFNITDGWAGGLVLVSESLRRT---- 241 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 ++ L G +S Y E+ +++ L TRHFL+++AI ++ ++ + Sbjct: 242 -QNLENLPGHLSSEAFSYFSLEIYNSLPLETRHFLMQTAIFDILDTRILKDFFTNIDAVS 300 Query: 297 RLEEIERQGLFLQRMDDTGEW--FCYHPLFGNFLRQRCQWEL-AAELPEIHRAAAESWMA 353 L E+E++ LF+Q+++ W F Y+ LF +FL+ L E +++ A + A Sbjct: 301 VLNELEQRNLFIQKIEPDDRWPVFKYNHLFRDFLKADLLKHLNPGEYEALNQKAGRLFWA 360 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 +A+ ++A + +I+ + L E++ ALP + + +P L+ Sbjct: 361 NKSHEQALGAFISAKAFSEIANIIRIKGTDYVITGRTAGLAEAIYALPKEMVDHDPWLLF 420 Query: 414 LQA 416 + Sbjct: 421 FKT 423 >UniRef50_C8X3C0 Tetratricopeptide TPR_4 n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3C0_DESRD Length = 1031 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 106/407 (26%), Positives = 159/407 (39%), Gaps = 20/407 (4%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-AAGKNDIGWYS 63 +K +RP L V R RL +L I +PAG+GKTTL++ + A + W+ Sbjct: 9 AKFARPA-LSQVVPRARLFDRLREHGRSSFLWIAAPAGFGKTTLVASYLEAQEVPSVWFR 67 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP- 122 LD GD F ++QA R L+SL F L+ +P Sbjct: 68 LDGGDGDPNSF----FLTLEQAVRLVFPDAPACVGPRFEQPLSSLSRNFFSHLSLVCAPQ 123 Query: 123 LYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 YLV D+ H + + E + + L +V +SR+ P L D+L E+ + Sbjct: 124 TYLVFDNAHELEDSHEFWEMLSTGLACAGPALRVVFMSRSSPPDPFVTLLASDRLRELPA 183 Query: 182 QQLAFTHQEAKQFFDCRLSSP---IEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 ++L +E + R P I +A + +GWA L+L+ R SA Sbjct: 184 EELRLNREEVVEM--VRRDPPQAGIGSALIPNLLAACNGWAACLRLVLRHLRFAPLSAQW 241 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 L Y E+ +D R FLL A+ + + TR+TG L Sbjct: 242 VD---LDRPPPELVTYFSTELFQAIDPDLRCFLLNLAVFPWFDADMATRLTGVAEAASIL 298 Query: 299 EEIERQGLFL---QRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQ 354 E + + F + D + +H LF NFLR + ++E ++ + A Sbjct: 299 ERMAGESFFTSVHRSAPDAPSIYIFHSLFRNFLRVEARKIFSSEQWQDLFQRAGRLLEEA 358 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALP 401 G AI+ AAGD L HA SL LE L LP Sbjct: 359 GDAEAAINAYSAAGDTEAWVATALRHAPSLLASGRHKNLERWLAPLP 405 >UniRef50_C3JMT5 Putative transcriptional regulator n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JMT5_RHOER Length = 876 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 160/379 (42%), Gaps = 30/379 (7%) Query: 10 PVRLDHTVVRERLLAKLS------GANNFRLALITSPAGYGKTTLISQWA------AGKN 57 P + V R RL KL+ G+ + L+++PAG GKT L++ WA + Sbjct: 13 PTAVKGLVARPRLHHKLTASTATKGSGPGPVGLLSAPAGAGKTLLLADWAREYSRASPDV 72 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATN--GHCAICETMAQKRQYASLTSLFAQLFIE 115 + W +L E DN L A+ + + G +T ++ LT F E Sbjct: 73 ALAWLTLAERDNNVSILCESLAEAIATSVDAAGQRLPVQTGSRPPVEQWLTH-----FAE 127 Query: 116 LAEWHSP-LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRD 174 E H L++DD H + +P+ + + P NL+++V +R P L L + Sbjct: 128 TLETHERRTTLILDDVHTLHDPMSIGLLDRILTQTPGNLSIIVAARYEPPLTWHRLALDG 187 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIA--LSARQN 232 +L S LAF E F + E + + + GW ++L A L+ R + Sbjct: 188 RLTRFASTDLAFDRSEITAIFG-EYDITLRDDELAIVENFTKGWGAVVRLTAAFLAGRSD 246 Query: 233 THSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEE 292 A ++D+LVDEVL ++ F+L+++++ S + L +T + Sbjct: 247 IGDALDEFTH----TPRPIADFLVDEVLTSLPEHVTSFMLRTSVVDSFSAQLAETLT-DS 301 Query: 293 NGQMRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES 350 N + ++ + + + R D D WF YHPL LR + E +H AA Sbjct: 302 NARSEIDSLIQFNFPVTRTDSADHTTWFSYHPLLREHLRAEFRRVDHVERNRVHLRAASW 361 Query: 351 WMAQGFPSEAIHHALAAGD 369 + + F EA+ ++ GD Sbjct: 362 FESNHFELEALELEVSIGD 380 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 2/84 (2%) Query: 811 AHFD--ENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIK 868 HF E F E++ + EL+ LT E+ VL + SG + E IA L ++ TIK Sbjct: 789 GHFGDQEAFAEQVRSRIRPQELVSAPILTPGEYTVLRELASGDTTESIADTLFLSVNTIK 848 Query: 869 THIRNLYQKLGVAHRQDAVQHAQQ 892 TH+R +Y+KL V++R+DA++ A++ Sbjct: 849 THLRGIYRKLEVSNRRDALKAARR 872 >UniRef50_B8DMH8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DMH8_DESVM Length = 839 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 219/926 (23%), Positives = 346/926 (37%), Gaps = 140/926 (15%) Query: 7 LSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-----AAGKNDIGW 61 ++RP R D RL A+L A N R I +P+GYGKTT+ + G + Sbjct: 1 MARPRRTDIPYFSPRLKARLHEALNMRSVFIEAPSGYGKTTIAQNYLRERLPEGATWVRH 60 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 ++E R + V A G + + L SL +L + Sbjct: 61 VCVEESPQAAWRRFCQTMQKV-DAHTGRTMQSYGLPDEDSAGHLASLLREL-----PCST 114 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P +LV+DD+H + V + F+ H+ L L+V++R + + + +L + + Sbjct: 115 PFWLVLDDFHHLAPHVPAPIWKAFLEHEAAQLRLIVVTRPVATRILPYEKA--GILRLNA 172 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 L T E+++ + R + A++ + GW A L R N A A Sbjct: 173 DDLRLTEAESRE-YATRAGIALNEAQAQELHRRAEGWIIAATLYL--RRWNERGAFAPAS 229 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 + S + L D V DN+D A + LL+ S DA G+ RL + Sbjct: 230 --TQTHDSGVDGLLRDVVWDNLDEAGQECLLR----LSPFDAFSAEQAAFLLGKARLTQK 283 Query: 302 ERQGL---FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 L + R D + H +F R+ + AELPE R A Sbjct: 284 TWAALQHNAMLRHDPASGLYYPHSTLLDFTRR-----IFAELPEETRRDA---------- 328 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFN--HSELSLLEESLKALPWDSLLENPQLVLLQA 416 LAAGD R L +A+ + +L L + + LL+ P + + A Sbjct: 329 -----LLAAGD-WCARSGDLENAFVFYYRLRDYERILALDLSGMKGEGLLDMPGVAYVPA 382 Query: 417 WLMQSQHRYGEVNTLLARAEHEIK------DIREDTMHAEFNALRAQVA-INDGNPDEAE 469 +T +A H + D+ H EF AL A++A I + P Sbjct: 383 I-----RDIAANSTRAMKATHPLSAIALALDLLSANCHEEFGALFAELADIVETEPFAPH 437 Query: 470 RLAKL--ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 527 + L L L Y+ I A V + +L L + M R D W + Sbjct: 438 QRDYLRGELRLLESFTCYNDIAAMGV---------RMLEALQLAGRQTAMVRLDDSWTFG 488 Query: 528 LWSLIQQSEILFAQ--GFLQ---TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 582 S++ +F + G L +T + ++ H P +L+ A Sbjct: 489 NVSVL----FMFHREPGRLDGELADMQTYCPHYLALSGGHGAGGP----------ELMEA 534 Query: 583 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 642 RL +A +S Y+ + Q A+ Q S+ G A L R+ L GN Sbjct: 535 ECRLHRGDADPAE----ISGYKARHQ---AALREQASIVIG----AEFLLGRVALLRGNA 583 Query: 643 KYHSDWISNANKVRVIYWQ----MTGDKAAA------------ANWLRHTAKPEFANNHF 686 +D + N + + Q M D A + A+WLR A F Sbjct: 584 AALADAMDNLTGIAGQFPQRANRMAADMARSFLMSLLHQPDEMAHWLREATPGSLARRFF 643 Query: 687 LQG-QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL-LLLNQLYWQA--- 741 +Q + + RA+ LL +P E++ L EN +L L S LN +L L L+ A Sbjct: 644 VQVLPFAELCRARYLLLSGKP-ELL---LGENEAALGLASALNYSLALTYGHLHGAAAWF 699 Query: 742 --GRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRIL 799 G++ A L AL LA G + F E L + + PE+ A + Sbjct: 700 MLGKRDAAADSLRAALALAVPDGLLLPFA-ECWPWIGPLLKKMHPGVCPEMPPAFAADVF 758 Query: 800 REINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGE 859 + + A D + R L+ RE +V L+ G S +IA Sbjct: 759 SLAERLEAGRRAVADTLYSAR-----------GRFGLSPREDEVARLMADGLSYGEIAQH 807 Query: 860 LEVAATTIKTHIRNLYQKLGVAHRQD 885 L ++ T+KTH++N YQK+G + R D Sbjct: 808 LCISLNTVKTHLKNAYQKVGTSSRSD 833 >UniRef50_C0D7B4 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D7B4_9CLOT Length = 887 Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 107/473 (22%), Positives = 191/473 (40%), Gaps = 43/473 (9%) Query: 10 PVRLDHTVV-RERLLAKLSGANNFRLALITSPAGYGKTTLISQW--AAGKNDIGWYSLDE 66 P RL R+ LLA+ A +++ G GKT W +G + W LD Sbjct: 41 PARLPEVCAPRKSLLARFDEAAEDGFVFVSAQGGSGKTVTTLLWLNKSGHTPV-WIGLDG 99 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 DN F L + + + + A+ +L EL +V Sbjct: 100 YDNSPSVFYKLLATGLYSLQPDNENLGRILTDPAFSATPVEHTVELLSELRPEVGKYVIV 159 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRN--LPQLGIANLRVRDQLLEI-GSQQ 183 +DD+H ITN I +S+ +R P T +LSR P+L V+D+ +I + Sbjct: 160 LDDFHQITNGEIIKSLPMILRRLPHTFTFFILSRGEIPPELLPF---VKDEKKDILHREA 216 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L FT E K++ + L + E+ + GWA + IALS ++ Sbjct: 217 LRFTESEIKRYLNT-LGHFLTPDEAKLVYMATDGWAIGVNAIALSG------------KV 263 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 AG + + + + D ++F ++++I + L ++G ++ +E++ R Sbjct: 264 AGSGGDGFARFFENMAWNAWDAELQNFCMRTSIADEFDTELAAALSGRDDAHAVMEDLSR 323 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHH 363 FL R+ G+ + YH LF FL+++ + E +++ AA + S A+ Sbjct: 324 SNSFLSRLH--GDTYRYHHLFQEFLQKQLKSSGTDE-AMLYKTAARYYKDHEDYSRALRF 380 Query: 364 ALAAGDALMLRDILL-----NHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 L +GD + L H + ++++ L LP + E P L +L AW Sbjct: 381 WLQSGDYKGTDNFLFLFLFRGHKNGVADYADF-LHGFFQNPLPERASREAPVLHVLYAWY 439 Query: 419 MQSQHRYGE----VNTLL------ARAEHEIKDIREDTMHAEF-NALRAQVAI 460 R+ E ++ +L A+A +E + H ++ L+ QV + Sbjct: 440 YYLTSRFEEYAKHMDAILRNLPRIAKAGNEFVEFAMLAFHVDYRKTLKTQVTL 492 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/247 (26%), Positives = 111/247 (44%), Gaps = 7/247 (2%) Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG-QWRNIARAQILLGEFEP 706 ++ N R + + GDK+AA WL + + F + Q ARA LGE E Sbjct: 633 FLPNLTAYRAKWELLDGDKSAAREWLAKYYVTDTEHIEFFRSFQHFTTARAYAALGEMES 692 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 A L L E ++L D +L LYW +K +A+ L + L++ GF+ Sbjct: 693 ALRYLLLLREFGKNLNRPLDRCEAGAILAALYWTLNQKKEAEAELTETLEVLQPYGFVRV 752 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 EGEA+ L++++ E + + E+ H F + ++ Sbjct: 753 VADEGEAVVPVLKRILSTVGGKEYTGPLTRAYVNEV-MLAAHSFGSRHKGYLAEAGR--- 808 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 E R L++++ ++L L+ GY N +I+ ++ TIK+H Y+KLGV + DA Sbjct: 809 --ETGRPVKLSKQQTRMLTLLAQGYKNAEISEMTGLSIPTIKSHTSLAYKKLGVNNAMDA 866 Query: 887 VQHAQQL 893 V A++L Sbjct: 867 VLKAKEL 873 >UniRef50_A5V9B6 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V9B6_SPHWW Length = 879 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 99/444 (22%), Positives = 175/444 (39%), Gaps = 44/444 (9%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS----QWAAGKNDI 59 P +L P+ V R R+ +++ A ++ L+ P G GKT+ ++ AAG + Sbjct: 5 PPRLIEPL-----VARPRIARRMAEAAG-KVTLVVGPPGSGKTSALASHHADLAAGGAAV 58 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W +L DN S+L A + A A+ R L++ Sbjct: 59 RWLTLSAEDNDPAILRSHLDHAFRGAG----------AEGRDEGD----------GLSDP 98 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 + ID I + F+ P + + + +R + + +R + I Sbjct: 99 PENIVGFIDGLEKIDAAPARALIGAFVLELPPSSSFHITARRMKGAMFHDGWLRGVVEVI 158 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 G +L T EA L + RI + V GWA L+ +A + R + Sbjct: 159 GPDELRMTDDEAAAL----LGEAWSPWDRQRINEAVDGWAAGLRFVARAPRSAERLLDGT 214 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 R + +++YL D V +D A+ L+ ++L + + G +++ Sbjct: 215 GERPFPVE---MANYLDDVVCARMDAASLAALMDVSVLDRFTPEALAAMPGRPCDWAQID 271 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + R+G F++ +D+ W +HP+FG LRQR + ++R AA + A GF +E Sbjct: 272 DHIREGSFIRYVDEQRCWAAFHPVFGRHLRQRLRRFDPDRFDALNRFAASWFEANGFGAE 331 Query: 360 AIHHALAAGDALMLRDILLNHAW---SLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 AI HA+ D+ ++ N L + ++ L E +P E P L L Q Sbjct: 332 AIRHAVTVADSAFAARVIENVGAIHVDLCDGPDVGLGER----VPATRAGELPLLFLGQI 387 Query: 417 WLMQSQHRYGEVNTLLARAEHEIK 440 + + R E L A + + Sbjct: 388 YFAIRRGRSVEARAALEEAGRQTR 411 Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 39/59 (66%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLL 894 L+ RE +++ L+ GY ++IA L ++ T+KTH + +++KLGVA R A+ A+ LL Sbjct: 819 LSPRETEIIALVAEGYITKEIAVRLGISEGTVKTHRKKIHEKLGVASRSQAIARARDLL 877 >UniRef50_C6PMR7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PMR7_9CLOT Length = 821 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 82/361 (22%), Positives = 163/361 (45%), Gaps = 34/361 (9%) Query: 19 RERLLAKLSGANNFRLALITSPAGYGKTTLISQW-AAGKNDIGWY-------SLDEGDNQ 70 RER+ LS + L +I +P G+GKTT + ++ + KN W SL+ NQ Sbjct: 9 RERINRILSKVYEYPLTIIEAPMGFGKTTAVKEFLQSEKNLYIWITFLNSSQSLNYIWNQ 68 Query: 71 QERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDY 130 S L A ++ + ++ + L ++ ++ VIDDY Sbjct: 69 FSEEISKLDAKSGKSLKSLGFPVDVPQSEKVLSVLNNI---------DYKEKTVFVIDDY 119 Query: 131 HLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQE 190 L NP ++ + ++ + +N +++++R+ ++ ++ +D I QQL FT +E Sbjct: 120 QLCPNPKMNNFITKIVKEKIDNFYIIIITRDTTKINLSEFLFKDMCQIISQQQLRFTKEE 179 Query: 191 AKQFFDC-RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINAS 249 +++ C + + I + +I + GW + +I L + G+N++ Sbjct: 180 LREY--CLMMKNNIPDDDLIKINEYTDGWISLAYMILLGLEKGIP---------VGMNST 228 Query: 250 HLSDYLVDEVLDNV-DLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFL 308 D LV+ L N+ ++FLLK +++ + +T EE L+++ ++ F+ Sbjct: 229 --IDDLVENTLFNIYGENIQNFLLKLSVMDNFTINQAFYITQEEKTDEILKKLRKENAFV 286 Query: 309 QRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAG 368 D+ + + H + +FLR + ++ A EL E++R AE +M + A + AG Sbjct: 287 -FYDEASKIYKIHNVLLDFLRIKFSFK-AKELKEVYRRLAEWYMEKRRFQTAFGYLYRAG 344 Query: 369 D 369 D Sbjct: 345 D 345 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 39/56 (69%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 L+QRE ++L L G +IA +L ++ T+KTH++N+Y+KL V+ + +A++ AQ Sbjct: 761 LSQREIEILTLTVKGLKRSEIAAKLNISEGTVKTHLQNIYKKLQVSGKFEAIKIAQ 816 >UniRef50_A5UVS9 Transcriptional activator domain n=2 Tax=Roseiflexus RepID=A5UVS9_ROSS1 Length = 1070 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 102/398 (25%), Positives = 170/398 (42%), Gaps = 49/398 (12%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGA-NNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYS 63 KL P + R +LA+L A + R+ + +PAG+GKTT ++QW A + + WY+ Sbjct: 8 KLVVPTSARPLIERPNVLAQLDRAIRSKRVVALAAPAGWGKTTALAQWVAQRTMPVAWYT 67 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 LD D F YL+ +V G I +A+ L + Q+ + A+ Sbjct: 68 LDSADRDPHVFLDYLLHSVADFVPGAPGIAARLAETTPQ-GLAEMIHQVALAFADAPEHF 126 Query: 124 YLVIDDYHL--------ITNPVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRVRD 174 L++DD H+ I + ++ I + LV+ SR LP L G+ + + Sbjct: 127 ALILDDVHVLDDDQAQSIPGVSLVFTLLASIAEYASHCHLVLASRTLPVLHGMVRMVAQQ 186 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPI---EAAESSRICDDVSGWATALQLI------ 225 + L F H++ Q S I EAAE ++ V GW T + L Sbjct: 187 RAAVFDYSVLQF-HRDDTQRLAGITSGLILSDEAAE--QLTASVGGWVTGIVLSLDQPVA 243 Query: 226 ---ALSARQ--NTHSAHKSARRLAGI--NASHLSDYLVDEVLDNVDLATRHFLLKSAILR 278 ++ +Q + H H A I N S + Y +++L + + FL +++L Sbjct: 244 HKDGMTGQQVVDRHLMHVPTPEEAVIEANTSQVYAYFAEQILAPLPADLQRFLEDTSVLH 303 Query: 279 SMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLR-------QR 331 ++ + +N L+EI R+GLF + W YH LF ++LR QR Sbjct: 304 DLSPQRCDILRSADNSAEYLDEIRRRGLF---VSSRAGWLSYHSLFRDYLRSRLARDPQR 360 Query: 332 CQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGD 369 C+ ++ R+A + + A+ A+ LAAGD Sbjct: 361 CR--------QLLRSAGDLYAAEDDIERALDCYLAAGD 390 >UniRef50_Q1IZS9 ATP-dependent transcriptional regulator n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IZS9_DEIGD Length = 993 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 108/392 (27%), Positives = 162/392 (41%), Gaps = 35/392 (8%) Query: 18 VRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG---WYSLDEGDNQQERF 74 R RLL L A R+ + +PAGYGKTT + AA +D+G W +LD D + Sbjct: 17 ARPRLLTLLRSA---RVVTVVAPAGYGKTTTL---AAHLSDLGRAAWLTLDADDADPQVL 70 Query: 75 ASYLIAAVQQATNGHC--AICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHL 132 A+ L AV G A+ + A R+ +T+ A + LV+D+ Sbjct: 71 AAGLAVAVSSLPGGTGPEALLDAGAPPRR---VTARVADVLDAAGA-----LLVLDEAQH 122 Query: 133 ITNPVIHESMRFFIRHQPENLTLVVLSRN-LPQLGIANLRVRDQLLEIGSQQLAFTHQEA 191 + P+ E ++ + + + +LSR L + L L I + LAFT E Sbjct: 123 LAGPLTSELLKELLGGR-----VALLSRTPLDSPDLTRLEAGGDLRRITAPDLAFTPAEL 177 Query: 192 KQFFDCRLSSPIEAAESSRICDDVS-GWATALQLIALSARQNTHSAHKSARRLAG-INAS 249 + E AE R+ V+ GW A + +A +A Q S A G Sbjct: 178 ADLLAAQ-GVKAEGAEV-RLAHAVTEGWPIAARFLAQAAAQGRVSLTSLADLDGGEAQLG 235 Query: 250 HLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQ 309 L YL EVL +D R L +S++ + L+ V E+ Q L+ + R G FL Sbjct: 236 TLFAYLAQEVLGPLDPVLRFLLTRSSVFEELTPELLAAVLEEQQAQALLDALTRGGTFLT 295 Query: 310 RMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGD 369 R TG+ + HPL LR E EI A + G P A+ L AG+ Sbjct: 296 R---TGDTYRAHPLLRAHLRGLLA---PGEAREIAARGAAYFEGTGRPRRALAAHLQAGN 349 Query: 370 ALMLRDILLNHAWSLFNHSELSLLEESLKALP 401 A ++L ++ ++L+ SL LP Sbjct: 350 AARAAELLASYGGGWLAQGRVTLVSRSLARLP 381 >UniRef50_A5VDQ9 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VDQ9_SPHWW Length = 888 Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 99/382 (25%), Positives = 167/382 (43%), Gaps = 20/382 (5%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG-- 60 + +L+ P R LL L A RL L+ PAG+GKTT ++QW A G Sbjct: 12 VGRRLAPPALQPGLCERTLLLRSLDVACAGRLTLVIGPAGFGKTTALAQWHASLVRRGQT 71 Query: 61 --WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W ++ E + RF L A++ A A+ + + S+ L + L Sbjct: 72 ACWCTMSEEERDPSRFLWMLALALEAAG---IALDGDVLRTVSDGSVGLACDALLMALER 128 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 +VI+++ I +P I + + PE++ LV+ +R P+L I+ LRV+ ++ Sbjct: 129 AAPKGAIVIEEFERIDHPPIAALVAELVDGLPEDMHLVLSARRKPKLPISVLRVQGRVRV 188 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I +L F +E D + EA E+ I GW A+QL L + A Sbjct: 189 IDPAELRFGRRELTALLDD--GADAEALET--IEQQTEGWPVAVQLYRLW--RERAGADA 242 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + +G+ AS ++DYL +++ D + + + L+ +I L + ++ L Sbjct: 243 VVPKSSGL-ASEVADYLAEQIFDGLAVDAQDMLIDLSIAEYCEIPLADFIRQSQDSAALL 301 Query: 299 EEIERQGLFLQRMDDTGEWFCY--HPLFGNFLRQRCQWELA-AELPEIHRAAAESWMAQG 355 ++ Q L + D + Y HPL R R + A+L IH A++ + Sbjct: 302 RQVADQLPGLVQRSDAEDDLVYRLHPLLLGHARARLALKPGRADL--IHGRASDWYWRNA 359 Query: 356 FPSEAIHHALAAGD-ALMLRDI 376 + AIHHA+ + D AL+ R I Sbjct: 360 RFAAAIHHAVLSHDEALLARRI 381 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 24/134 (17%) Query: 751 LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKF 810 L +A++L+ G+++ F EG ++ L++ I ++ +EQ ++ R I + Sbjct: 765 LREAVRLSYPEGYVAPFAQEGRSIVPLLQRAIGKGSV--IEQRLLAQVARAIER------ 816 Query: 811 AHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTH 870 ER P+ L+ RE +++ + G SN+ IA L ++ TIK H Sbjct: 817 --------EREFAAPDA--------LSNREAEIVAHLADGASNKVIARRLGLSDNTIKFH 860 Query: 871 IRNLYQKLGVAHRQ 884 ++ +Y KLGV+ R+ Sbjct: 861 LKKVYAKLGVSSRK 874 >UniRef50_B8GBN1 Transcriptional activator domain protein n=3 Tax=Chloroflexus RepID=B8GBN1_CHLAD Length = 1083 Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 143/514 (27%), Positives = 215/514 (41%), Gaps = 44/514 (8%) Query: 21 RLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIGWYSLDEGDNQQERFASYLI 79 R+ +L+ A + L ++ +P G GKT ++ A G W D D+ R ++L Sbjct: 48 RVEQRLAVAVDVPLTIVVAPPGSGKTVALAALATHGGWPAAWCRADTNDDPS-RLLAHLA 106 Query: 80 AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITN-PVI 138 AA+ + T ++ R ++ L L EL + L+IDD HLI P + Sbjct: 107 AALSRVT--------SLDPNRLPRTIDGLINALTGELDD---ETLLIIDDAHLIDEQPEL 155 Query: 139 HESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRDQLLEIGSQQLAFTHQEAKQFFD- 196 + FI QP L LV+ R P IA R+R + L I + L FT EA Q + Sbjct: 156 RALIERFIVAQPPRLHLVLAGRREPNSPLIATARLRGEALLIEAADLLFTSDEAAQLWQQ 215 Query: 197 CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLV 256 + P++ E + +GW AL+ IAL A + R G A L DYL Sbjct: 216 AGKTLPVDFDE---LMTFSAGWPLALR-IALDA--TDWRSALGLREQKGKPA--LDDYLE 267 Query: 257 DEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGE 316 EV + + L +SA LR + L + N + E+ R+ LF++ + G Sbjct: 268 REVFALLPEPLQRCLQRSAGLRWITPDLCAALDPTFNASELIAELRRRRLFVEPFGEHGV 327 Query: 317 WFCYHPLFGNFLRQRCQWELAAELPE---IHRAAAESWMAQGFPSEAIHHALAAGDALML 373 F PL +L +R AA PE +HR AA + G A++H +AAGD + Sbjct: 328 RF--QPLIAAWLSRR-----AAADPEWVHLHRQAAAYFQQHGDHESALYHQIAAGDPAAV 380 Query: 374 RDILLNHAWSLFNHSELSLLEESLK--ALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTL 431 L A +L + + ++ AL D E P+L+ LQA + +R Sbjct: 381 -TTFLPLARTLLAERRAEAVLDWMRRLALTGD---ETPELIELQAAALHQLNRLEAALAT 436 Query: 432 LARAEHEIKDIREDTMHAEFNALRAQVAI--NDGNPDEAERLAKLALEELPPGWFYSRIV 489 RAE D + + LR Q AI + P A L + AL+ LP RI Sbjct: 437 YRRAERAFA-ASGDRL-GQSRCLRGQAAIYLDTVQPAPATDLLRRALKLLPRQCGAERIE 494 Query: 490 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 523 + E +G L L Q Q+A+ H + Sbjct: 495 LLLMQAENWANRGRADIGLRLEQTARQLAKAHGL 528 >UniRef50_Q2JEI5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Frankia sp. CcI3 RepID=Q2JEI5_FRASC Length = 1235 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 103/413 (24%), Positives = 154/413 (37%), Gaps = 61/413 (14%) Query: 17 VVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA---GKNDIGWYSLDEGDNQQER 73 V R RLL L A L ++ +PAG GKT L++ WAA G+ I W +D R Sbjct: 63 VDRPRLLDALDAATVLPLTVVRAPAGSGKTVLVAAWAAARRGETPIVWVRVDPAVVPGPR 122 Query: 74 FASYLIAAVQQATNG---HCAICETMAQKRQYASLTS-----LFAQLFIELAEWHSPLYL 125 + Q +G H + +Y + +L LA+ + L Sbjct: 123 GGGPGLPLWPQLLHGLGRHGLLPAGEGFGSRYGPAADDLYDRRYRRLANILADLPTSFIL 182 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 ++DD HLIT + + I + ++++ R +P + + LR + EIG LA Sbjct: 183 ILDDVHLITRRSDLDGLELLIDGAADRARIILMGRMVP-VALHRLRAAGWITEIGPADLA 241 Query: 186 FTHQEA-----KQFFDCRLSSPIEAAESSRICDDVSGWATAL-------------QLIAL 227 FT EA +Q R A S + GWA L L Sbjct: 242 FTRAEAAALLGRQEITGRQEITASPATVSGLVHVTEGWAAGLRLAAGALAARERRPLPGA 301 Query: 228 SARQNTHSAHKSAR-----RLAGINASH--LSDYLVDEVLDNVDLATRHFLLKSAILRSM 280 R A S +G A H ++D+L EVL R FLL++++L M Sbjct: 302 DGRWEAAVASPSGGLGDTAGFSGAVAGHPAIADFLRAEVLAGKPSPVRRFLLRTSVLERM 361 Query: 281 NDALITRVTGEE------------------------NGQMRLEEIERQGLFLQRMDDTGE 316 L V E +G+ L + F+ +D G Sbjct: 362 TGPLADAVAAERMDAGVLAAATGSRAAPAPTVGARVSGKEVLAALAHADGFVVELDHDGG 421 Query: 317 WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGD 369 WF +H L LR + + E+H AA + A ++A+HHA AGD Sbjct: 422 WFRFHRLLAAVLRSALAADGDEDTAELHLRAAIWFAAHRRTTDAVHHAAHAGD 474 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 39/58 (67%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 L+ RE VL + + + +IA EL V+ T+KTH++++Y+KL V R+DAV A++L Sbjct: 1175 LSDRELAVLSYLPTMLTTTEIAAELFVSVNTVKTHLKSIYRKLDVPRRRDAVHRAREL 1232 >UniRef50_A3DFE3 ATP-dependent transcriptional regulator-like protein n=3 Tax=Clostridium thermocellum RepID=A3DFE3_CLOTH Length = 291 Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 113/235 (48%), Gaps = 27/235 (11%) Query: 17 VVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFAS 76 V R RL K++ + L I + AGYGKTTL+ Q+A +ND+ W SLDE D+ F Sbjct: 43 VPRPRLTEKIAPPGS-SLTYIHADAGYGKTTLMMQYAGERNDVVWLSLDERDSNMTYFLR 101 Query: 77 YLIAAVQQA---TNGHCAICETMAQKRQYAS--LTSLFAQLFIELAEWHSPLYLVIDDYH 131 +L A ++ + + A + + S L++L A L L++DD H Sbjct: 102 HLEDAFRKKFPRFDFYATDLLPFAARDTFVSRALSALLC------AIGRRKLTLILDDVH 155 Query: 132 LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEA 191 +ITN + + ++ P +LTLV+ R G+ L++ +++E+ L F+ +EA Sbjct: 156 VITNGATMDFLNRLVKSCPSSLTLVMAGRYELWSGLFRLKMEGRIVELTKADLCFSREEA 215 Query: 192 KQ---FFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 ++ FFD EAA ++ GWA LQ ++A ++ R+L Sbjct: 216 QKLWGFFD-------EAAYTA-----TEGWALVLQSYRVAAENGKLCLPQADRKL 258 >UniRef50_C1CW78 Putative Tetratricopeptide repeat (TPR)-containing transcriptional regulator n=1 Tax=Deinococcus deserti VCD115 RepID=C1CW78_DEIDV Length = 1001 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 110/424 (25%), Positives = 178/424 (41%), Gaps = 42/424 (9%) Query: 17 VVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG-WYSLDEGDNQQERFA 75 V R RL A L+ A R+ L+ +PAG+GKTT ++ A G G W +LD D + A Sbjct: 23 VARPRLRALLTQA---RVLLVVAPAGFGKTTALAAGAPGLGGPGAWLTLDADDADPQVLA 79 Query: 76 SYLIAAVQQ---ATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHL 132 L AV+ + + +R A + + LV+D+ Sbjct: 80 GGLALAVEDLPGGAGAAALLDAGASPRRVAARVADVLDACGA---------LLVLDEAQH 130 Query: 133 ITNPVIHESMRFFIRHQPENLTLVVLSR---NLPQLGIANLRVRDQLLEIGSQQLAFTHQ 189 +T + + +R + + L LSR LP L L + + + + LAFT Sbjct: 131 LTGSLASDVLRELVSGGAGRVAL--LSRVPLTLPDL--TRLETQGDVQHLSATDLAFTAD 186 Query: 190 EAKQFFDCRLSSPIEAAESSRICDDVS-GWATALQLIALSARQNTHSAHKSARRLAGINA 248 E + C L+ P A+ R+ V+ GW A++ +A +A Q R+LA ++ Sbjct: 187 EVGELL-CTLNVPATGADV-RLAHAVTEGWPIAVRFLAQAAAQG----RVHLRQLADLDG 240 Query: 249 SH-----LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 L YL EV+ +D R L +S++ + L+ V + + L+ + Sbjct: 241 GEAQLGTLFTYLAQEVIGPLDPELRVLLTRSSVFEELTPELLEAVLNQPQARELLDALAG 300 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHH 363 G+FL R+ D G + HPL LR AAE+ + A + A G P A+ Sbjct: 301 SGIFLTRVGDEG--YRAHPLLRAHLRAGLP---AAEVRTLSARGAAYFEATGRPRRAMAA 355 Query: 364 ALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQH 423 L +G+A +L + ++L+E SL LP ++ P L L ++ Sbjct: 356 HLLSGNAQRAAQLLSAYGRVWLRIGRVTLIERSLGRLPKEAW--TPDLHALAGDALRLSS 413 Query: 424 RYGE 427 RYGE Sbjct: 414 RYGE 417 >UniRef50_A9AYH6 Transcriptional activator domain n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYH6_HERA2 Length = 1064 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 89/325 (27%), Positives = 136/325 (41%), Gaps = 54/325 (16%) Query: 14 DHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK--NDIGWYSLDEGD--N 69 D + R RL A+L + RL ++ + AGYGKTT ++QW D WY L + Sbjct: 26 DDLIQRPRLQAQLEACWSCRLTMVVAAAGYGKTTALAQWMQQTLGGDWLWYGLHSPTEAD 85 Query: 70 QQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDD 129 Q +R S L A Q SL LF + LA + LV DD Sbjct: 86 QLQRLLSSLTKA-------------RFPQINPINSLADLF-DCWATLAP--RRIALVFDD 129 Query: 130 Y-HLITNP--VIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 HL + +++E RF P NL L++ SR LPQL A L R Q ++ + +L F Sbjct: 130 CQHLQASAWRLLNELARF----APTNLHLILSSRQLPQLDWAGLAARGQYRQLTAAELRF 185 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 + E ++ + S +AA + +GW L+L R L Sbjct: 186 SQAELQELLPTQSPSQRQAAWQA-----TNGWPAGLRLW---------------RALPSG 225 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 +SD+L +VL + A R +A+L N A++T + + + L Sbjct: 226 YQGTVSDFLAQDVLGQLPEAVRRTAQFAALLPFFNQAVLTAMAAPDPA-----SLWHYNL 280 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQR 331 F+ + D EW+ + P + LRQ+ Sbjct: 281 FV--LPDHAEWWRFEPFWLEVLRQQ 303 >UniRef50_UPI0001C4276F hypothetical protein BpOF4_03975 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4276F Length = 1082 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 98/485 (20%), Positives = 206/485 (42%), Gaps = 32/485 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG- 60 ++ +K P++ + R +L+ +L L LI + GYGK++ +S + + + Sbjct: 9 VLRTKFIPPLQRSSMIYRPKLMKQLKQIEECPLTLIHTGPGYGKSSALSSFLDTSDKLSC 68 Query: 61 WYSLDEGDNQQERFASYLIAAVQQA-TNGHCAICETMAQKRQYA---SLTSLFAQLFIEL 116 WYSL + D F +++ AV++ + + E + L + + EL Sbjct: 69 WYSLSKQDENFFHFIVHVVHAVREKFPHFGSELIEYLISGEVEGWEEELDYICIEFCNEL 128 Query: 117 AEWHSPLYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRD- 174 + P V+DD H+ + ++ + ++ I P N+ +V+ R P + R+ + Sbjct: 129 LQLKKPFVCVLDDIHITERSELVKDWLQLLIESAPANVHIVLAGRVRPTWDVITRRLLNG 188 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 QLLE+ F+++E + E I GWA ALQ+ L + H Sbjct: 189 QLLELTETDFIFSNEEIDVLLSDVFNIDCTPEELIEIEKATEGWAIALQM--LGQQWKEH 246 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 ++ + L +L E + FLL++++ N+ L V + Sbjct: 247 GEVQAVLQDGLETTDELFRFLTMEAFSRQPEEIKKFLLETSLFEEFNEKLCQTVFEAVHA 306 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 + + +Q LF+ + + + YH LF +FL ++ + + R A + A Sbjct: 307 GNYITHLIQQNLFVVEIGKSQ--YRYHALFRDFLLRQLSKNPILQDNLLQRVAC-YYKAA 363 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G +++ + AGD +L++ L ++ ++ L +L ++ P+++ Sbjct: 364 GDYEKSLEVYMRAGDYREASALLVHEGIRLLHNGKMEGLMVTLDSI--------PEIMKD 415 Query: 415 QAWLMQSQHRYGEVNTLLARAEH------EIKDIREDTMHAEFNAL----RAQVAINDGN 464 + WL+ + GE+N ++ E +++++ E+ AE +L RAQ+ ++ Sbjct: 416 EYWLL--WYLEGEMNRYYSKFEQAMTCYRKLEELAEEKQDAEGLSLSMEGRAQIYLDTIQ 473 Query: 465 PDEAE 469 P +A+ Sbjct: 474 PVKAQ 478 >UniRef50_A5V3K4 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V3K4_SPHWW Length = 861 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 99/418 (23%), Positives = 170/418 (40%), Gaps = 53/418 (12%) Query: 34 LALITSPAGYGKTTLISQW----AAGKNDIGWYSLDEGDNQQERFASYLIAA--VQQATN 87 + L+ +PAG+GK+ + + AG LD+ D RF + A V A Sbjct: 25 VTLLRAPAGHGKSVALDRLRAAIEAGGERCAALLLDKRDADLSRFFRRVAQALGVDPAQP 84 Query: 88 GHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIR 147 + E + + + A LF++ ID+ + P + + + F Sbjct: 85 DAAGVAEAV----EVGAADDRPALLFLD----------GIDEAGDVLPPALSDLILF--- 127 Query: 148 HQPENLTLVVLSR--NLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEA 205 L V+ SR NLP G+A LR +D++ IG QL FT EA F E Sbjct: 128 --APGLRFVIASRESNLP--GLAKLRAQDRVAVIGPDQLGFTRAEALAFLGAS-----ED 178 Query: 206 AESSRICDDVSGWATALQLIALSARQNTHSAHKS--ARRLAGINASHLSDYLVDEVLDNV 263 A+ R+ D GW L+ + R + A + ++A ++D+L +++L + Sbjct: 179 ADVLRLVDRCEGWPILLKFV----RDGLDAGDPPTLAGDMGSVSAGLIADFLDEQILAPL 234 Query: 264 DLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPL 323 FL ++A++ L + E + +E + R LQ G W+ +P+ Sbjct: 235 LPEDADFLERTAVVSRFTLDLARLLAPEAAVEQSVERLGRAAGLLQARRLNGLWYHVNPM 294 Query: 324 FGNFLRQRCQWELAAELPEIHRAAAESWMAQ-GFPSEAIHHALAAGDALMLRDILLNHAW 382 L +R Q + +++ +HR E+WM + EA+ HA A D ++ Sbjct: 295 LRATLMRRFQARIGSDVRRVHRMI-EAWMIEHDAVDEAVLHACLAQDYDECVQLVRR--- 350 Query: 383 SLFNHSELSL------LEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR 434 F + LS+ L L ALP L P L + +A ++ + R + L+ R Sbjct: 351 --FGPANLSMRYGLRTLRSVLAALPRHYLDHEPALGISEALVLSKEGRVSDARRLIHR 406 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 25/245 (10%) Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR-----NIARAQILL--GEFEPA 707 +R + G + A LR P + +WR IA A++L+ +F A Sbjct: 630 LRAELLSLAGHRNQAGAALRAIRVPSNGED---DARWRERLALGIANARLLIHSRQFRRA 686 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 ++L+ L + + + LL L +G A L++ L+ A + + F Sbjct: 687 TVLLDTLEGECERRGIGRLVAKVGLLRALLLACSGSPQRAIATLVELLQSAQQPS-MQAF 745 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 + EGE MA+ L L+ ++ A R L E+++ + H ++R Sbjct: 746 IEEGELMAR-LCSLVAHHSQRHALGPEASRFLAELSERLGQSYEHV----IDRDAG---- 796 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 S L+ RE ++L + G SN+ A L V+ T+K H++ +Y+KLG +R A+ Sbjct: 797 -----GSYLSAREREILLSLAQGESNKSTAERLNVSEATVKFHLQRIYRKLGAHNRVKAI 851 Query: 888 QHAQQ 892 AQQ Sbjct: 852 AVAQQ 856 >UniRef50_Q4KI37 Transcriptional regulator, LuxR family n=3 Tax=Pseudomonas fluorescens RepID=Q4KI37_PSEF5 Length = 848 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 140/596 (23%), Positives = 231/596 (38%), Gaps = 47/596 (7%) Query: 14 DHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS---QWAAGKNDIGWYSLDEGDNQ 70 H R RL A L A+ R+ L+ +PAG GKT L++ Q A + W L G + Sbjct: 16 SHHFSRSRLSAPLL-ASGARVKLLCAPAGSGKTALLAECLQQAPETCRVSWLPLSGGRH- 73 Query: 71 QERFASYLIAAVQQATNGHC-AICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDD 129 + G C A+ + + +R A + LA +P ++ IDD Sbjct: 74 --------------SPQGLCAALAQALGLERDDE------ATVLQHLAHLQAPAWIFIDD 113 Query: 130 YHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQ 189 Y + + + + LT + R P L + DQL E+ LAF+ Sbjct: 114 YCRVAAADLDLLLDRLLSLDNPQLTWWLGCRRRPLCNWPRLLLDDQLFELDGPALAFSQI 173 Query: 190 EAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINAS 249 E +Q RL P+ A +SRI GW +++ L + T K R + Sbjct: 174 EIEQLLQ-RLPQPLCAQTASRILQRSGGWCAGVRIALLEGSELTIQPCKPGR------PN 226 Query: 250 HLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQ 309 L +YL E+ + A L N L + G G L ++ F++ Sbjct: 227 TLLEYLEHELFSVLPAELAQVWQVLAHLPRFNAELCEHLFGVGEGAQYLRTLQDMACFIE 286 Query: 310 RMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGD 369 D G+W P +R W HR A + ++AQ A AL A + Sbjct: 287 PWDGGGDWLQVFPPLARLMRDEA-WPGGRSW---HRRACQWFIAQEDWQSAFEQALRAEE 342 Query: 370 ALMLRDILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRY--- 425 + +L + ++ LF LL + + + LL +P LV L M R+ Sbjct: 343 YEVAVSLLEHFSFEFLFQQDNALLLLQLHERHGGELLLVSPHLVGLLVAAMLFAGRFEQA 402 Query: 426 GEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY 485 G+ +AR + ++ + A + A + + G A + AL+EL + Sbjct: 403 GQCMAQMARFAPQPSAAQQRQLLARWQAQQGWLLHLSGRMAAARQHFIEALDELADSAWT 462 Query: 486 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ 545 +R++ S L + EL + AL ++ +AR D + + +++L +G Sbjct: 463 TRLLCLSGLTQQALLGAELDVAQALNREALCLARAQDAQLFEGLLELDHAQLLEQRGAPH 522 Query: 546 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA---RSGIE 598 A E+ + ++ Q L P+ L RI +L R AE +A RSG+E Sbjct: 523 RAQSLLEQVCERLSMQALRATPL---LGRIALRLGRLALRQGHAEQAAGYFRSGLE 575 Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 40/62 (64%) Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 R S L+ RE QVL LI G SN+QIA +L ++ T+KTH R ++ KLGV R AV AQ Sbjct: 783 RESLLSLRELQVLQLIAQGCSNQQIAEQLFISLHTVKTHGRRIHSKLGVERRTQAVAKAQ 842 Query: 892 QL 893 L Sbjct: 843 AL 844 >UniRef50_Q3A891 ATP-dependent transcriptional regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A891_PELCD Length = 977 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 99/419 (23%), Positives = 165/419 (39%), Gaps = 35/419 (8%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLA--LITSPAGYGKTTLISQWAA-GKNDIG 60 P ++ P + R+RL+ +L R+ L+ + AG GKTT+I Q+ K Sbjct: 18 PPQVDTP----RFLCRDRLVDRLLREGGARIPDILLEAQAGQGKTTVIKQFLDRSKTAFV 73 Query: 61 WYSLDEGDNQQERFASYLIAAV-------QQATNGHCAICETMA----QKRQYASLTSLF 109 WY + D F + + + A C A QKR L L Sbjct: 74 WYQVGAEDADPGFFLTAIATCIYARFPECPSAKTAQILSCSDFALFDLQKRVDLLLNDLC 133 Query: 110 AQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPEN----LTLVVLSRNLPQL 165 A L LY+V DD H + + HE + H E L ++ SR L Sbjct: 134 ACL-------TDDLYMVFDDLHYLLD---HEFSLALLSHLFETASPRLHFILSSRECLPL 183 Query: 166 GIANLRVRD-QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQL 224 A L + Q L +G++ LAF E FF + + + GW + L Sbjct: 184 NDALLSDGNRQWLRLGNRDLAFDETEITDFFYRIHHLDVPSDTIRTVARTTDGWVMGISL 243 Query: 225 IALS-ARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDA 283 + L A+Q + + G + DY E+ + LL ++L + A Sbjct: 244 LGLQLAQQEGAAGFPALVNCRGEGTRAILDYFRREIFAPLPQRLHRPLLVLSLLEEIPVA 303 Query: 284 LITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPE 342 L +TGE + E+ R +FL+ +D F H LF FLR+R L+ + + Sbjct: 304 LAVELTGEVEIGVDFCELARSNVFLRPLDPDRTEFGLHHLFQQFLRERATVALSPQAIRR 363 Query: 343 IHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALP 401 I++ A + + + ++A+ + L AGD + L ++ ++ + L L+ +P Sbjct: 364 IYQRAGQFCLKREDIAQALRYLLQAGDYAAVESALQDYGMDFLATNQTATLAAILQQIP 422 >UniRef50_A4XRD7 Regulatory protein, LuxR n=2 Tax=Pseudomonas RepID=A4XRD7_PSEMY Length = 868 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 138/574 (24%), Positives = 231/574 (40%), Gaps = 57/574 (9%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN----- 57 +P+ + RL V+ L + A+ RL L+ +PAG GK+ L+ Q A Sbjct: 12 VPAPSADLPRLPPAVISRLPLEQRLLASEARLRLLCAPAGAGKSVLLGQCARQTPAAVAR 71 Query: 58 ---DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFI 114 D+G SL + + L AA+QQ T + + Sbjct: 72 LWLDLGGRSLTPA-----QLCTRLAAALQQPA-------------------TDVNEAALL 107 Query: 115 ELAEWHSP-LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 E+ + HS L++ +DDY + + + P +T V SR P + L ++ Sbjct: 108 EMLQAHSGRLWIFLDDYPRQPDGELDACLDRLFAAAPAQITWWVASRRTPAWNLPRLLLQ 167 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 LLE+ Q LA + L + R+ GW A++L+ L A ++ Sbjct: 168 GDLLELEGQDLALDEVGLAELLTA-LQLNLGEDLGQRLLQSSEGWLAAIRLLLLDADED- 225 Query: 234 HSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 + R+ L DY+ EVL ++D R L A+L + L + E Sbjct: 226 -----ALRQRLQAGCPLLRDYVQREVLADLDDELRSDLHALALLPRFSAPLCEHLL-EGR 279 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWF-CYHPLFGNFLRQRCQWELAAELPEIHRAAAESWM 352 G L E++R+ LF++R+D +G WF + PL LR + A +H A + + Sbjct: 280 GSELLAELQRRQLFVRRLDSSGTWFRLWRPL-AAVLRSLPGGLVPA---PVHVRACQWFA 335 Query: 353 AQGFPSEAIHHALAAGDALMLRDIL--LNHAWSLFNHSELSLLE--ESLKALPWDSLLEN 408 G EA+ HAL AG + + L + L HS LL+ E L A + S + Sbjct: 336 RHGDIREAVEHALQAGQVEVAVNYLQRFSQEQLLQGHSVAQLLQWREELPAWLFAS---S 392 Query: 409 PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDI---REDTMHAEFNALRAQVAINDGNP 465 P+L++LQAW + R+ E H + R+ + A + AL +A G Sbjct: 393 PRLIVLQAWALIICARFDEARACTEALTHFLPQPDARRQRKLLAHWQALSGVLARQCGRR 452 Query: 466 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 525 D + + AL+ L + RI+ L + + L ++ + + +++R H Sbjct: 453 DARQHCLE-ALQALDDSGWSQRILCYQALAQQYLAENALDQARQALDEGLRLSRLHGSLI 511 Query: 526 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 559 Y + +L QG A E E++ L+ Sbjct: 512 YEALLNTDRCLLLEMQGEAGRAAELAEQSLTLLR 545 Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Query: 815 ENFVERLLNHPEV---PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHI 871 ++ +RL P P T+ L+ RE VL LI G SN++IA L ++ T+KTH Sbjct: 782 QSLHQRLFQPPPTLDEPASAGTALLSSRELAVLQLIAQGCSNQEIADRLFISLHTVKTHA 841 Query: 872 RNLYQKLGVAHRQDAVQHAQ 891 R + KLGV R AV A+ Sbjct: 842 RRINVKLGVQRRTQAVAMAK 861 >UniRef50_Q2SH33 Probable regulatory protein, luxR family n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SH33_HAHCH Length = 896 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 5/199 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 + K S P+ + R RL KL A ++ +T+PAG+GKTTL+ WAA K + Sbjct: 6 FLKGKFSFPLASQIVISRSRLTRKLDAARQAQIHCLTAPAGFGKTTLMQDWAAPQKGRVI 65 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMA---QKRQYASLTSLF-AQLFIEL 116 W++ + DN+ R L+AA A G E + + A + LF A+L Sbjct: 66 WFTAERSDNRLLRLGGGLLAAFANAGYGFLGCKEELGLLNEPSGAAHWSRLFIAELETAA 125 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + L LV+D+ HL+ P + +R P L +LSRN + +++ Sbjct: 126 RRTGASLTLVLDNLHLLDAPEAIALLSCLVRDLPAPHRLCLLSRNPLAPALFASTSWNRV 185 Query: 177 LEIGSQQLAFTHQEAKQFF 195 + + +LAFT +E KQ+ Sbjct: 186 QHLNADELAFTLEEGKQYL 204 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 50/229 (21%) Query: 672 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR-N 730 W H + FA H Q++L E A EE E AR +++ ++ R Sbjct: 697 WGGHYDQACFATQH-----------EQLILSEILFALNRPEESLEPARQVKVWAEQGRCG 745 Query: 731 LLLLNQLYWQA------GRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQL 784 LLL L +A GR+ AQ+V DAL + T + H ++ +A Sbjct: 746 LLLTRALAIEALALQKLGREEKAQQVFHDALHVGRMTSSL-HSLVRKDA----------- 793 Query: 785 NTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT------SPLTQ 838 PE++ +L Q R+ +V RL+ H + L++ Sbjct: 794 ---PEMKP-----LLSAAKQQGRYP------AYVGRLIEHYGQDIDQDDDDSANLAALSK 839 Query: 839 REWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 RE QVL L+ +G SN +IA L + T+K H+ N+Y+KLG A+R A+ Sbjct: 840 REKQVLDLLVTGMSNPEIADALCRSLGTVKIHVHNIYRKLGAANRVAAI 888 >UniRef50_A6V205 Probable transcriptional regulator n=7 Tax=Bacteria RepID=A6V205_PSEA7 Length = 827 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 149/650 (22%), Positives = 253/650 (38%), Gaps = 72/650 (11%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA---AGKND 58 L P L RP RL ++R RL L+ +PAG GKT L+ + A Sbjct: 14 LPPQHLPRP-RLHQPLLR----------GECRLRLLCAPAGSGKTVLLGECARQAPPGVQ 62 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCA-ICETMAQKRQYASLTSLFAQLFIELA 117 + W +L F L A+ +G A +C + Sbjct: 63 VAWLALGGEALDPATFRRRLAGALGLPEDGDEAQLCRRLRNA------------------ 104 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 S L+L++DDY +P + + + ++ + SR PQ + L + +L Sbjct: 105 ---SALWLLLDDYPRCPDPALDACLDRLLSAASPRVSWWLASRRRPQCNLTRLLLEGELR 161 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSG-WATALQLIALSARQNTHSA 236 E+ + QLAF E RL A+++ + SG W AL+L L + Sbjct: 162 EVDAGQLAFDLTEVVDLL--RLHGRRADADAAVALLERSGGWCAALRLGLLVGEEQA--- 216 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 L +YL E+LD++ L A L + L R+ E+ Sbjct: 217 -----------GPLLQEYLQHELLDDLSLPLADAARALAWLPHVGSGLFRRLF--ESLPQ 263 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPE--IHRAAAESWMAQ 354 L+E+ +G LQ D + + R W + P+ HR A + Sbjct: 264 GLDELLARGFPLQ-TDGLQRYRLPAAI-------REVWRTSPHRPQAAFHRCACHWFAEH 315 Query: 355 GFPSEAIHHALAAGDALMLRDIL--LNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 G EA+ ALAA + +L L L H+ + L+ LP L P+L+ Sbjct: 316 GETREAVDQALAADEPETAAALLQKLTEEQLLHGHN-IGLVLALRDELPAALLASTPRLL 374 Query: 413 LLQAWLMQSQHRYGEVNTL---LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 +L AW + R E LAR + R+ ++ A++ L + G A Sbjct: 375 ILNAWALLYAGRLAEAEACIGQLARFQPMPSAARQRSLLAQWQGLYGILLHCRGERGAAG 434 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 +L + ALE LP + ++ S L ++ +G + ++ + + ++AR+HD + Sbjct: 435 QL-REALEHLPEDAWSQGLICHSALMQLAMIEGRMDQARLVGRDALRLAREHDSLIFEAL 493 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + +++ L ++G L A ++A + + + + PM + RA+L R EA Sbjct: 494 IELDRAQWLESRGELVRAESVLDRAQRYLEDLGQQGSPMLGRITLRRARLCLQQGRDGEA 553 Query: 590 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 639 R G+E + + L L +GDLD A ++L +E L+ Sbjct: 554 GQWYRQGLEQARANRDPWVLYGYLGLALLEAGQGDLDAAFNRLLEVERLM 603 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 39/60 (65%) Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 SPL+ RE VLGLI G SN++I +L ++ T+KTH R + KLGVA R AV A+ L Sbjct: 764 SPLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKAL 823 >UniRef50_UPI0001C310C7 ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C310C7 Length = 873 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 99/420 (23%), Positives = 162/420 (38%), Gaps = 62/420 (14%) Query: 10 PVRLDHTVV-RERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGD 68 P L T+V R RLL ++ L L++ PAG GKTTL++ WA ++ D Sbjct: 6 PPPLPRTLVHRPRLLERVDAGVRGPLTLVSGPAGAGKTTLLADWA--------HARATAD 57 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVID 128 + + + Q + +AQ + A L SPL ++D Sbjct: 58 DHRTVLWRTVETTAQAG--------DLLAQLTRAAPLPG------------ASPLVAIVD 97 Query: 129 DYHL-----ITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQ 183 +P + E + +R + + L +V+ +R P L + +R+ ++E+G + Sbjct: 98 GLGAHAAERAHDPALAERVAALLRERTDALHVVLATRGEPPLPLGRVRLDATVVELGPAE 157 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 LAFT +EA+ RL AA++ + V GWA L Sbjct: 158 LAFTWEEARSLLAARLP----AAQAHARWEQVEGWAAGLTR------------------- 194 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 S L Y+ E+L + R FLL+ ++ + L +TG + L+ + R Sbjct: 195 ---EPSELPAYVERELLGGLGDELRDFLLRVSVADELTPELAAVLTGAADAGGTLDRLAR 251 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHH 363 + +D G + LR L E E+HR AAE W + + A Sbjct: 252 AHALVVPLDRHGGGYRLARPLREALRAALPAALPGEASELHRRAAE-WHGRAGDALAAAR 310 Query: 364 ALAAGDALMLRDILLNHAW-SLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQ 422 A A L L AW L + E L A+P +L +P+L + L ++ Sbjct: 311 HALAAGAPELAADTLAGAWLDLLARGRDVEMAELLAAMPAATLAGDPELRVCAGALATAR 370 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 7/83 (8%) Query: 816 NFVERLLNHPEVP-----ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTH 870 FV LL+ E P E S L+QRE +L + SG S +IAGEL V+A T+KTH Sbjct: 788 GFVAELLD--ERPAGTAAEAPGDSALSQRERAILRYLPSGLSKREIAGELGVSANTVKTH 845 Query: 871 IRNLYQKLGVAHRQDAVQHAQQL 893 + ++Y+KL V R AV A++L Sbjct: 846 VSSIYRKLDVRSRAQAVARAREL 868 >UniRef50_Q143R5 MalT n=1 Tax=Burkholderia xenovorans LB400 RepID=Q143R5_BURXL Length = 695 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 89/375 (23%), Positives = 156/375 (41%), Gaps = 29/375 (7%) Query: 18 VRERLLAKLSGANNFRLALITSPAGYGKTTLIS---QWAAGKND-IGWYSLDEGDNQQER 73 V R LA L + RL ++T+P GYGKT L+S +W + W +LDE +ER Sbjct: 21 VPTRALASLRSRSLPRLTVVTAPPGYGKTVLLSTIYRWLCSTGERCLWLTLDE----RER 76 Query: 74 FASYLIAAVQQATNG--------HCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 + A ++QA G + +A + +L + Sbjct: 77 DVRSVFALLRQAMAGSGQMGDEADIQLASAIADPVDMIDPGHAMEVVVSDLRRLPGRTVV 136 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLS-RNLPQLGIANLRVRDQLLEIGSQQL 184 ID+ + +P+I + H+ N+ LVV S RNLP + +++ L +G++QL Sbjct: 137 FIDNLDVCVDPMIAVFVERLTFHRAPNVHLVVSSVRNLP-IDFVRMKLEVDGLMLGTEQL 195 Query: 185 AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA---- 240 +F E +Q F + ++ I GW A++L + + A ++ Sbjct: 196 SFDRNETRQLFAMSGLARLDDGIILDIHAHTEGWPAAVRLAQVLFSEQRQFAQSTSSGSF 255 Query: 241 -----RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 R G + +S L + VL +D A FL++ A++R + L +TG + + Sbjct: 256 TSTPLRDFNG-DQKDISRVLTERVLAIIDPAHVRFLMEIALVREFSADLAEFITGNPSAR 314 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESWMAQ 354 L+++ ++ L + + WF H L L Q + L E+ + AA + + Sbjct: 315 EWLDDLLQRNLLIFAVGGGRRWFRLHTLLREHLLQESRERILPVRRTEVLKRAARWYTDR 374 Query: 355 GFPSEAIHHALAAGD 369 A+ AL A D Sbjct: 375 KDYVSALGSALEAPD 389 >UniRef50_C8W196 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W196_DESAS Length = 824 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 92/403 (22%), Positives = 172/403 (42%), Gaps = 33/403 (8%) Query: 16 TVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYSLDEGDNQQERF 74 T+ RER+ L + L ++ +P GYGKTT + ++ A ++ + W S + E F Sbjct: 6 TLKRERVNRALMNIFEYPLTIVEAPMGYGKTTAVREFLAARDVRVLWTSFYSDSDTGEAF 65 Query: 75 ASYLIAAVQQATNGHCAICETMAQKRQYA---SLTSLFAQLFIELA---EWHSPLYLVID 128 ++ A + MA KR +L + F+ L ++ LVID Sbjct: 66 WDRVVMAAGS--------FDEMAGKRLKGFGVPSDALHVRSFLSLMNDLDYPPDTTLVID 117 Query: 129 DYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTH 188 D H + + E +FI P++ +V+++R++ L +A L + + Q L FT Sbjct: 118 DIHYARDILRPELFGWFITELPDDFHIVLITRDISFLDLAELFAKGLCNIVSQQTLRFTG 177 Query: 189 QEAKQFFDCRLSSPIEAAES-SRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGIN 247 +E + + C L + ++ ++ GW + LI L Q I Sbjct: 178 EELRAY--CILMDFRQGEDALEKVSKYTGGWISLAYLILLGLEQGIP-----------IG 224 Query: 248 ASHLSDYLVDEVLDNV-DLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 S + + LV+++L N D + FLL+ +++ + + VT E+ L+++ ++ Sbjct: 225 QSSVINELVEKILYNAYDETIQTFLLRLSVMDTFTEEQARYVTEEKRAGEILKKLRQENA 284 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALA 366 F+ + G + +H L +FLR R Q + AE+ ++R E ++ + A + Sbjct: 285 FVFYDEAIGVYRIHHVL-SDFLRAR-QTD-HAEVSLLYRQVGEWFLEKKAFKPAYAYLCR 341 Query: 367 AGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 AG+ + +L + SE E A P L + P Sbjct: 342 AGETERVLSLLDEEDAITKDSSEFEGAPEMYAAAPRKLLFQYP 384 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 5/79 (6%) Query: 815 ENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNL 874 E+++E L PE T LT+RE +VL L G +IA L V+ TT+KTH+ N+ Sbjct: 748 EHYIESLSRAPE-----STVTLTERELEVLTLAAEGLRRNEIAARLYVSGTTVKTHLANI 802 Query: 875 YQKLGVAHRQDAVQHAQQL 893 Y+KL V R AV+ A +L Sbjct: 803 YRKLEVGGRTAAVKKAGKL 821 >UniRef50_B8HJC4 Transcriptional activator domain protein n=6 Tax=Arthrobacter RepID=B8HJC4_ARTCA Length = 985 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 87/347 (25%), Positives = 141/347 (40%), Gaps = 33/347 (9%) Query: 30 NNFRLALITSPAGYGKTTLISQWAAG-KNDIGWYSLDEGDNQQERFASYLIAAVQQATNG 88 N R+ + + AG GKTT I Q AA I W +LD D R YL AA+ Sbjct: 14 NQNRVVWVAATAGSGKTTAIVQAAATWGGPIAWLTLDGTDAAPGRLLIYLEAAIAAHVPD 73 Query: 89 HCAICETMAQKR-QYASLTSLFAQLFIELAEWHSPLYLVIDDY-HLITNPVIHESMRFFI 146 + + R + + L A+ + L LV+D +L+ + + + Sbjct: 74 AAGLASSALTARIPHPEVAGLLAESVGD-----EDLLLVLDGLENLVGAYEALDVVGAVV 128 Query: 147 RHQPENLTLVVLSR-NLP-----QLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLS 200 R+ P L +V+L+R +LP Q G+ D++ IG + LAFT +EA + Sbjct: 129 RYAPVGLKVVLLTRVDLPIDLSAQAGV------DRVATIGEEDLAFTPEEAAGAL---VE 179 Query: 201 SPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVL 260 + I ++S + GW T + A +R G A L YL ++L Sbjct: 180 AGITDIDASSAVEATGGWVTGVLFEAWHSRLYISGT--------GGEADPLHGYLASQIL 231 Query: 261 DNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCY 320 + R FL+ S++L + + + G+ N L + L + + T C Sbjct: 232 AKLAPEEREFLIVSSLLDEVTPSRAAAL-GQSNAGDLLVRLRSHHLPVSWISGTYRMRC- 289 Query: 321 HPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAA 367 HP F +L + AE+ RA + + +G EA+ LAA Sbjct: 290 HPRFREYLVTCLERRGKAEVQATRRAYGDLLVTEGHLEEAVEQFLAA 336 >UniRef50_A1U449 Regulatory protein, LuxR n=2 Tax=Marinobacter RepID=A1U449_MARAV Length = 891 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 101/423 (23%), Positives = 165/423 (39%), Gaps = 39/423 (9%) Query: 33 RLALITSPAGYGKT-TLISQWAAGKN-DIGWYSLDEGDNQQERFASYLIAAVQQATNGHC 90 RL + +P GYGKT L+S A+ + ++ W SL+ GDN R S L A+ Sbjct: 62 RLLQLEAPGGYGKTHALVSALASAPDVNVRWISLNAGDNAPSRLLSILAIAL-------- 113 Query: 91 AICETMAQKRQYAS--LTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRH 148 + E + +T L + E LV+D+ H +TNP + + + H Sbjct: 114 GLAEVLPPNGGTFEDHMTMLLVNRGRQAREARE--VLVLDNVHYLTNPAVSGLLHQLVTH 171 Query: 149 QPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF-DCRLSSPIEAAE 207 P L++ + SR L + +G L F+ E +FF R S I + Sbjct: 172 LPSGLSVAMASRLSVPFESHTLELNGNNTRLGPDTLEFSRSETFEFFAKARSDSLITSVA 231 Query: 208 SSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLAT 267 + GW T L L +Q R A + +L D + + A Sbjct: 232 IDHLFGLTEGWPTPLALYRRELKQG-------GERRALHETPSVERFLKDCIAAQLGSAQ 284 Query: 268 RHFLLKSAILRSMNDALITRV--TGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFG 325 L A + S +D L + + E+G M E +GL L+ + G W+ +PL Sbjct: 285 LKSLRAIAEMDSCSDELFFAIEPSVSESG-MPPSEAADRGLPLKPVPGRGRWYRLNPLLQ 343 Query: 326 NFLRQRCQWELAAELPEIHRAAAESWMA--QGFPSEAIHHALAAGDALMLRDILLNHAWS 383 +L+ + A W Q FP EA+ +A+ AGD+ + I + Sbjct: 344 AWLQTPVMGGYITRM-----LMASRWFEQRQQFP-EALKYAVLAGDSDEVVRIASESTEA 397 Query: 384 LFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLA------RAEH 437 L + + L K LP + L + +L ++ W+ ++ + LL R EH Sbjct: 398 LLLGQDTASLLSLRKNLPAELLERSARLRIVYGWVHAIGGQFQQAKQLLEDFNDRDRKEH 457 Query: 438 EIK 440 E + Sbjct: 458 EAR 460 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 P++ RE VL LI G SN++IA +L ++ T+KTH R + KL V R A+ A++L Sbjct: 830 PISDREQGVLELIAQGLSNQEIADKLHISLHTVKTHARRINAKLDVKSRTQAIVRAREL 888 >UniRef50_Q0SJC2 Possible transcriptional regulator n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SJC2_RHOSR Length = 312 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 16/223 (7%) Query: 61 WYSLDEGDNQQERFASYLIAAVQQA----TNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 W ++D DN F +LI A+++ + + E + Q LT+L ++ Sbjct: 5 WLTIDTDDNNVVWFLGHLIEALRRVRPELSQDLGQVLEEHGDRAQQYVLTNLIN----DI 60 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + +++DD+H +T P ++ + + + +L VV SR L ++ +RVRD+L Sbjct: 61 HAGGDRVAVILDDWHRVTEPGTIAALGYLLDNGCHHLQFVVTSRTQTGLPLSRMRVRDEL 120 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 +E+G + L F E+K+F + +E R+ G ALQ +LS R Sbjct: 121 VEVGPEALRFAPDESKRFLVDVNGLVLADSEIDRLTASTDGSVAALQPASLSLRD----- 175 Query: 237 HKSARRLAG-INASH--LSDYLVDEVLDNVDLATRHFLLKSAI 276 K R L ++ H + +YLV+ VLD V+ FLL ++I Sbjct: 176 AKDPRLLIDHLSGRHRTIGEYLVENVLDAVEPRILEFLLATSI 218 >UniRef50_D0WI68 Putative HTH-type transcriptional regulator MalT n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WI68_9ACTN Length = 787 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 132/292 (45%), Gaps = 31/292 (10%) Query: 613 AMLIQCS--LARGDLDNARSQLNRLENLLGNGKY--HSDWISNANKVRVIYWQMTGDKAA 668 A+ IQC + GD A + L+ L K I+N + +R W Sbjct: 513 AIGIQCKNLMCCGDARQALTLLDLHRRHLAQSKILERKRIIANLDALRCHAWLRLRQAER 572 Query: 669 AANWLRHTA----KP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 723 A W+ A +P +F N + +R +++A I ++ A ++ L+E+ +S Sbjct: 573 AHAWVEENAPDLSRPLDFLNRYI----YRAVSQAYISESRYDEAFRLISMLDEHVKSRNG 628 Query: 724 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQ 783 + D +L W++G K D +R + DAL+ A R G++ + G A+ Sbjct: 629 VIDRIHYGVLTAIAAWRSG-KGDWKRWITDALEQAKRYGYVRTVTLYGAAV--------- 678 Query: 784 LNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV--PELIRTSPLTQREW 841 L L E+++H + + E + A + + L +P+ P T PLT+ E Sbjct: 679 LPLLTEIQEHAEEMDVDE------EQLARLVKGARAQALWYPDFMSPPSGLTEPLTKTEI 732 Query: 842 QVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 QVL LI SN +I L + +T+KTH+ ++ KLGV+ R A + A++L Sbjct: 733 QVLHLICQDKSNVEIGELLGIKLSTVKTHVSHILAKLGVSRRVQAAREARRL 784 >UniRef50_B0A6U3 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6U3_9CLOT Length = 826 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/340 (19%), Positives = 140/340 (41%), Gaps = 25/340 (7%) Query: 14 DHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQER 73 + V E+L K+ N+ L ++ +P GYGKTT I + K +Y + + Sbjct: 10 NEVYVNEKLTEKIDKINSHPLTVVEAPMGYGKTTAIKIYL-NKFHTNYYWQNIYTDSDIA 68 Query: 74 FASYLIAAVQQATNGHCAICETMAQKRQYASL---TSLFAQLFIELAEWHSPLYLVIDDY 130 F + + + + E + + L L ++I+ + +++DDY Sbjct: 69 FWQGFCRIISKIDSNVGSRLENIGLPKDSIKLEECIELINSIYIK-----EEIAIILDDY 123 Query: 131 HLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQE 190 HLI N + E + ++ + L++++RN P + I L+++ + I L F + Sbjct: 124 HLIDNKNLDELIYNLVKSMDNKIHLIIITRNKPDIEIEELQLKKLVNYITKNCLEFEKDD 183 Query: 191 AKQFFD-CRLSSPIEAAESSRICDDVSGWATALQLIALS-ARQNTHSAHKSARRLAGINA 248 K+++ C ++ + + GW +A+ LI L+ NT + L Sbjct: 184 IKKYYKLCGIN--LNTLNIDDVYKKSEGWISAIYLIMLNYIEYNTIEISEDIYELVE--- 238 Query: 249 SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFL 308 V D + + FLL+ + + VTG+EN + ++E+ + F+ Sbjct: 239 --------KLVYDPFEDKFKDFLLRLCVFDQFTLEQVKFVTGDENVDLLIKELTQVNAFV 290 Query: 309 QRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAA 348 + D + + +H +F L ++ + + E+++ Sbjct: 291 -KYDKKNKVYLFHAIFRTCLLEKLKEKDDDYKKEVYKKGG 329 >UniRef50_Q67R77 Putative transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67R77_SYMTH Length = 1070 Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 116/289 (40%), Gaps = 9/289 (3%) Query: 19 RERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQER-FASY 77 R L A+L RL ++ +PAGYGKT+ + + G + LD + R F Sbjct: 18 RPHLTARLQEGLTRRLTVLLAPAGYGKTSALRAFV-GAAGLPVLWLDRPFETEWRGFLQQ 76 Query: 78 LIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLIT--N 135 L V + G ++ T+ L +A H LV DD + + Sbjct: 77 LGEGVARELRGGTSLVRTLYGGGLPEDPLPLLLADLSAVAGDH---VLVFDDLRPVPGDS 133 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF 195 PV R E + + +R L++ + EI Q+L F +E + Sbjct: 134 PVADLIGRL-AESAGERTHIYIAARAALPFPTVRLKLSEGAGEITEQELRFRREEMAAWL 192 Query: 196 DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ-NTHSAHKSARRLAGINASHLSDY 254 P AA R+ GW AL L+ +ARQ +A + LA L+ Y Sbjct: 193 TAATGEPPSAAVLDRVEQLTEGWPAALVLLTEAARQAGGLAAIPAVDDLAAPLPEDLTAY 252 Query: 255 LVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 L DEV++ +D A R F+ +SAIL + A + G + + ++ + R Sbjct: 253 LADEVMEGLDPAVRSFMEESAILNFVTPAACEALLGRRDSEQMVDRLCR 301 >UniRef50_A6CKT6 Regulatory protein, LuxR n=1 Tax=Bacillus sp. SG-1 RepID=A6CKT6_9BACI Length = 930 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 122/562 (21%), Positives = 237/562 (42%), Gaps = 79/562 (14%) Query: 14 DHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWYSLDEGDNQQE 72 + +VRERL KL+ ++ +T GYGKT+LIS + K + WYS+D N Sbjct: 11 EKILVRERLFLKLNKYPTKKVIALTGGTGYGKTSLISSYILQQKIEYLWYSIDRSSNN-- 68 Query: 73 RFASYLIAAVQQATN---GHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDD 129 S LI ++Q G+ I + K + +S + L++VID Sbjct: 69 --LSELIHTIEQDIQNIRGNIQISGSHLIKEKISS----------SFIDNKDSLWIVIDG 116 Query: 130 YHLITNPVIHESMRFFIRHQ---PENLTLVVLSRNLPQ-LGIANLRVRDQLLEIGSQQLA 185 ++ + E +R F+ + P +T V++ R LP + ++++ LL + + LA Sbjct: 117 MDIL--HINDEEIRLFVSYMSQFPSTITFVLIGRRLPSTFPTSRMKLQGDLLHLTQKDLA 174 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAG 245 T E + + E R +++ GW + L A ++ + + + + Sbjct: 175 LTKDETQTLLRSIYHVNLSDYEIERSYNEMEGWPAGITLFAGIIKE--YPMLEREKFVEH 232 Query: 246 INASH-LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQ 304 ++ S +S YL +E++ + + FL ++ + ++ + ++ ++ Sbjct: 233 LHESEDISHYLANEIIGKLPKDLQTFLYYCSLSCEIEREILKEFQPDVLVDQWIDTLKSL 292 Query: 305 GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELA-AELPEIHRAAAESWMAQGFPSEAIHH 363 LFL G + H L FL ++ + E A++ +H+ A + + EA Sbjct: 293 QLFLYE-GSLGNYRL-HELIRRFLYKKMEEEWGKAKVVLLHKDLANLYKKKYRFIEAFSQ 350 Query: 364 ALAAGDALMLRDILLNHA------------------WS-LFNHSELSLLEESLKALPWD- 403 LAAG+ ++ +++ + A WS N S++SL +A P + Sbjct: 351 FLAAGEDVLAVEMIKHMAERYESEQFLRLMNGWLEKWSPSLNLSQISLF--LFRATPINH 408 Query: 404 --SLLENPQLVL------LQAWLMQSQHRYGEV--------NTLLARAE-----HEIKDI 442 L+E ++ L ++ LM+ QHR + L+A E +E D+ Sbjct: 409 TKKLIEPLKISLERNENKSKSTLMKLQHRLATIYFYAGNLEKALVAYKESLGFSYETNDV 468 Query: 443 REDTMHAEFNALRAQVAINDGNPDEAERLAK--LALEELPPGWFYSRIVATSVLGEVLHC 500 R M A ++ AQ ++A LAK LA+ E+ G+ +++ A L EV+ Sbjct: 469 R---MIALNTSMIAQTYRFMNEEEKALSLAKEALAMAEM-TGFEQAQMHALWTLSEVMMN 524 Query: 501 KGELTRSLALMQQTEQMARQHD 522 +G++ + +Q ++ + D Sbjct: 525 RGQIEKGRRFAEQAIDVSTKCD 546 >UniRef50_A9DNR9 Regulatory protein n=2 Tax=Flavobacteriales RepID=A9DNR9_9FLAO Length = 146 Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 45/63 (71%) Query: 831 IRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 I T L++RE++VL L+ G+SN++IA L V+ +TIKTH+ N+Y KL V R A+Q A Sbjct: 79 IETLGLSKREYEVLCLLAEGHSNKEIASLLSVSESTIKTHVSNVYTKLDVKRRTQAIQKA 138 Query: 891 QQL 893 +QL Sbjct: 139 KQL 141 >UniRef50_A5V421 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V421_SPHWW Length = 890 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 76/334 (22%), Positives = 134/334 (40%), Gaps = 31/334 (9%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG---- 60 S+L +L V R+RLLA L RL I +P G GKTT++ Q A G Sbjct: 13 SRLRPRPQLVPLVERDRLLAWLDADVPSRLVWIGAPPGAGKTTMMEQAYARVGSCGGFRA 72 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SL + + F++ LI AV ++ + + A + F +L Sbjct: 73 WLSLTDQEATTAAFSAALIHAV------------ALSARDEPAEPGRDLPEAFSQLCGGR 120 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 ++L +DD+ +R + P +T+VV SR L A L +R ++ Sbjct: 121 H-IWLFLDDWDRAECAETEAVLRLILAEYPGGITVVVGSRTASPLTSAALLMRGGIIRFD 179 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 L FT E C + P A + I + GW +QL L Q Sbjct: 180 FDNLCFTRGE---IAGCAGADP-SAGDLDAIWTETHGWPALVQLARLGMMQRRSFGG--- 232 Query: 241 RRLAGINA---SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 +G +A + ++DY+ +E+L + R ++ A+ ++ L+ + + Sbjct: 233 ---SGDDAFPDAMIADYVSEEILGALVSPERQAMICGALFDELSADLLDIILERSDSMES 289 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQR 331 ++ + R+ L + + W+ P+ +R+R Sbjct: 290 IDALRRRHLIAE-AGSSANWYRMMPVLAAHVRRR 322 >UniRef50_B0TA01 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=3 Tax=Caulobacter sp. K31 RepID=B0TA01_CAUSK Length = 891 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 83/353 (23%), Positives = 140/353 (39%), Gaps = 28/353 (7%) Query: 30 NNFRLALITSPAGYGKTTLISQ-WAAGKNDIG---WYSLDEGDNQQERFASYLIAAVQQA 85 + R L+ +P GYGKT ++Q WA + W S+ E + A + A + Sbjct: 39 KSIRCHLLRAPQGYGKTVAMAQYWAEHRQAFAATAWVSVKECRRDLQLLADRICAQIS-- 96 Query: 86 TNGHCAICETMAQKRQYASLTSLFAQLFIELAEW--------HSPLYLVIDDYHLITNPV 137 A E Q R SL + +LA W S + + IDD + Sbjct: 97 -----ATHEASGQDRSPPPTESL--RNLHDLAAWLWETRDRLGSKVLICIDDLEFDLHS- 148 Query: 138 IHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDC 197 IH+ + F+ P + + S +G A ++ R E+ LAFT EAK Sbjct: 149 IHQ-IEAFMLATPAEVEFIAASS--ADIGFARMKARRDTHELRHGALAFTLDEAKAVTLA 205 Query: 198 RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVD 257 + AE + GW L+ +A + + A + G++ L Y Sbjct: 206 GERQAVSEAEIHSLWKRTEGWPEIFCLLMQAASERRSTDRLIADHITGVDID-LDKYFRS 264 Query: 258 EVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEW 317 +L ++ T F + ++IL S++ V +G ++++ + + Q D + Sbjct: 265 TILHSLPDDTLSFCVCASILGSVSAEYFNHVFLRNDGAYFIDKLSTERMLFQPRDRSQTA 324 Query: 318 FCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS-EAIHHALAAGD 369 + +HPL FL R E P + AA+ W Q S E+I+ +L AG+ Sbjct: 325 YEFHPLLREFLEHRFSVEYGGLKPNLLARAAQ-WQRQNNNSRESINLSLRAGE 376 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 36/58 (62%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 LT++E +L I G SN IA + ++ T+K HIRNL+ KL V +R A+ ++++ Sbjct: 830 LTRKELAMLQRIREGLSNRDIAIKHRISEDTVKWHIRNLFAKLKVKNRIQALMESERI 887 >UniRef50_D1CEU2 Transcriptional regulator, LuxR family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CEU2_THET1 Length = 217 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 45/59 (76%) Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 PL++RE ++L L+ SG++N +IA EL VA T+K+H+ N+Y+KLG +R +A+ A++L Sbjct: 155 PLSERELEILSLMASGHTNSEIARELYVAVGTVKSHVNNIYRKLGAKNRVEALSRAREL 213 >UniRef50_C7H4E9 Transcriptional regulator, LuxR family (Fragment) n=2 Tax=Ruminococcaceae RepID=C7H4E9_9FIRM Length = 804 Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 104/420 (24%), Positives = 165/420 (39%), Gaps = 40/420 (9%) Query: 9 RPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS----QWAAGKNDIGWYSL 64 R + L+ + ER+ L + L + +P GYGKTT I+ Q +N + Sbjct: 2 RKLDLNAIYISERVQETLRPVSVSALTAVVAPMGYGKTTAINWFLNQRKQTENAVILRVN 61 Query: 65 DEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE---WHS 121 DN+ S +VQ N A T +Y S AQL +L Sbjct: 62 IYSDNR-----SIFWKSVQ---NAFAAAGLTALAGCEYPEDASSAAQLMDDLCTVLAGDR 113 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRN--LPQLGIANLRVRDQLLEI 179 P YL +DD+HL+ + + + PEN+ L+V SRN LP+ I LR+ +L I Sbjct: 114 PCYLFLDDFHLLKDEKAAKFLCGLANRLPENVHLIVASRNNFLPKEEI--LRLGHRLHRI 171 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 G +QL H E + R + A+ + GW +A+ L N HS + Sbjct: 172 GKEQLRLNHTELAHYAH-RCGMDLTEAQVDSLLRSCEGWFSAIYL-------NLHSLAER 223 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 L+ + + +L+N+ + FL + + VT + L Sbjct: 224 GILLS--EDADIYSMFAAAMLENLPPKMQEFLAMMGLADEFTVEMAQAVTEMPDAAEILR 281 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAEL-PEIHRAAAESWMAQGFPS 358 + Q F+ R+ D G+ F +H + + C L A L PE A + + A Sbjct: 282 TLTEQNAFVTRLPD-GKTFRFHHML-----KECAERLFARLAPEKQDACRKRYGAWYEAK 335 Query: 359 EAIHHAL----AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 HAL A GD ++ A L + L E L P ++L ++P +L+ Sbjct: 336 LQYLHALTAYEACGDYDAALQVIERDAGILLTSLGSAELLERLGRCPVETLKQHPFAILV 395 >UniRef50_UPI0001C32364 transcriptional activator domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32364 Length = 1009 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 75/313 (23%), Positives = 134/313 (42%), Gaps = 40/313 (12%) Query: 33 RLALITSPAGYGKTTLIS------QWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQAT 86 R+ ++++ AG GKTT ++ W + W S+D D R +YL AA+ + Sbjct: 46 RVVVVSATAGAGKTTAVAAAARRLTW-----PLAWLSVDRTDAAPGRLVTYLEAALARTR 100 Query: 87 NGHCAIC-ETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITN-PVIHESMRF 144 + E +A +A L + A +PL +V+DD + + P + Sbjct: 101 PELAGLASEALAAGIPHAEAVGLLIE-----AAGDAPLLIVLDDLERLGDAPEALAVIEA 155 Query: 145 FIRHQPENLTLVVLS-RNLPQ-LGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSP 202 +R+ P + + ++S R++P L + + V + E LAFT EA + + Sbjct: 156 LLRYAPPAVHVALISRRDVPSVLSVPSGHVSATISE---GDLAFTVTEAAEALELLGERE 212 Query: 203 IEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGIN--ASHLSDYLVDEVL 260 +AAE + GW T + A +SA +AG+ A L YL ++L Sbjct: 213 TDAAE---VVAATGGWVTGVLF----------EAWRSAAHVAGLGGEADPLDGYLSSQLL 259 Query: 261 DNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCY 320 + +D A R FL+ +++L + A T + G+ R+ + L + + C Sbjct: 260 EQLDPAARDFLVATSVLEEVTVARATAL-GQPAAAERVLALRAAHLPVVWGEGGTSMRC- 317 Query: 321 HPLFGNFLRQRCQ 333 HP F ++L R + Sbjct: 318 HPRFRDYLLARLE 330 >UniRef50_P17051 Regulatory protein alkS n=3 Tax=Pseudomonas RepID=ALKS_PSEOL Length = 882 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 125/548 (22%), Positives = 217/548 (39%), Gaps = 61/548 (11%) Query: 15 HTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS-QW----AAGKNDIGWYSLDEGDN 69 H+ + L+ GA R+ L +P GYGKT ++ +W AG+ + W SL Sbjct: 28 HSCIYRPRLSIADGAAP-RVCLYRAPPGYGKTVALAFEWLRHRTAGRPAV-WLSLRASSY 85 Query: 70 QQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDD 129 + + +I Q T + A L L + L+ + + +D+ Sbjct: 86 SEFDICAEIIE--QLETFEMVKFSRVREGVSKPALLRDLASSLWQSTSNNEIETLVCLDN 143 Query: 130 Y-HLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTH 188 H + P++H M F + + P+N+ V + G + L++ + E + LAF+ Sbjct: 144 INHDLDLPLLHALMEFML-NTPKNIRFAVAGNTIK--GFSQLKLAGAMREYTEKDLAFSA 200 Query: 189 QEAKQFFDCR--LSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 +EA + L P E E+ + +V GW L+ ++ + H SA Sbjct: 201 EEAVALAEAESVLGVPEEQIET--LVQEVEGWPA---LVVFLLKRELPAKHISA------ 249 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 + +Y DE+ + + R FL S++L + V NG ++ + + Sbjct: 250 -VVEVDNYFRDEIFEAIPERYRVFLANSSLLDFVTPDQYNYVFKCVNGVSCIKYLSTNYM 308 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALA 366 L+ + F HP+ NFLR+ E A+ + + AA +G AI +L Sbjct: 309 LLRHVSGEPAQFTLHPVLRNFLREITWTENPAKRSYLLKRAAFWHWRRGEYQYAIRISLR 368 Query: 367 AGDAL----MLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQ 422 A D M I+L+ + F E+ L + L LP + + P +++ AW++ Sbjct: 369 ANDCRWAVSMSERIILDLS---FRQGEIDALRQWLLELPKQAWHQKPIVLISYAWVLYFS 425 Query: 423 HRYGEVNTLLARAEHEIKDIREDTMHA----EFNALRAQVAINDGNPDEAERLAKLALEE 478 + ARAE IKD+ + E L+ +AI DE L+ EE Sbjct: 426 QQG-------ARAEKLIKDLSSQSDKKNKWQEKEWLQLVLAIGKATKDEM-----LSSEE 473 Query: 479 LPPGWFYSRIVATSV-LGEVLHCK----------GELTRSLALMQQTEQMARQHDVWHYA 527 L W + +V G L C EL + LA Q + A+Q+ + + Sbjct: 474 LCNKWISLFGDSNAVGKGAALTCLAFIFASEYRFAELEKVLAQAQAVNKFAKQNFAFGWL 533 Query: 528 LWSLIQQS 535 + QQ+ Sbjct: 534 YVARFQQA 541 >UniRef50_C0GFG4 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFG4_9FIRM Length = 378 Score = 60.1 bits (144), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 20/173 (11%) Query: 731 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLI-------Q 783 LLL L + G + A++ L AL+ G+ F+ EG+ A +L+ + Sbjct: 211 LLLKACLEEKTGNSAAAEQCLCTALETGFECGYFQVFLDEGKDTAPVFYRLLDQKDKSTE 270 Query: 784 LNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE---RLLNHPEVPELIRTSPLTQRE 840 + EL Q+ A+R+ + I+ E+F E +L + P +P L+ L+ RE Sbjct: 271 ITLSGELLQY-ARRVYQAISPDAGQ------ESFKEEPLKLASSP-IPGLVE--ELSTRE 320 Query: 841 WQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 ++L LI G SN++I+ +L ++ T+K H N+Y KLGV R A+ A++L Sbjct: 321 LEILDLINRGLSNQEISEKLFLSVGTVKWHTSNIYGKLGVKGRTQAIAMARKL 373 >UniRef50_D1BFN8 ATP-dependent transcriptional regulator n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BFN8_SANKS Length = 846 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 85/400 (21%), Positives = 164/400 (41%), Gaps = 44/400 (11%) Query: 34 LALITSPAGYGKTTLISQW--AAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCA 91 + ++ +P GYGK+ +S+W G + W + D E +AS L V H Sbjct: 34 VTVLRAPQGYGKSAHVSEWLRRTGHPAV-WMTARPTDVADEFWASLLELLV------HAG 86 Query: 92 ICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPE 151 + + A + A + L W +P LV+D + + ++ +R P Sbjct: 87 VADASAGANEAAEPAAAVRD---ALTRWPTPFVLVVDQLEAVRAARVDTALAQMVRASPA 143 Query: 152 NLTLVVLS------RNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEA 205 + LV+ S +L +LG+ + V Q LA TH E + L + + Sbjct: 144 -VRLVLCSHISSDPEHLARLGMDTVFVE-------GQALALTHPEVARLA-ISLDAVVAD 194 Query: 206 AESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDL 265 +C D+ GW ++ + S+ + L + + +++ Sbjct: 195 GVVRDLCHDLWGWPAPIRGLLASSVGSGEVPRADWSTLGSLFGNR-----------SIEG 243 Query: 266 ATRH-FLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLF 324 +T F++++ ++ + L ++G E L +E GL R G + Y PL Sbjct: 244 STGSLFVVRTTVVEELTVELARSLSGTETAGHLLATLEAAGLARSRPSPQGRVYTYMPLL 303 Query: 325 GNFLRQRCQWELAAEL-PEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWS 383 + L +W +EL + HR AA+ + P A+HHA++A D + +I + +W Sbjct: 304 RS-LSTTSEWTQVSELVTDAHRTAAQ--VLADTPERALHHAVSARDWERVVEI-ADASWV 359 Query: 384 LFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQH 423 ++ + L ++L LP P+LV ++ L++ ++ Sbjct: 360 HLVMTDPAALADALSRLPGRWFQRMPRLVTVRDVLLEDRN 399 >UniRef50_Q143R8 ATP-dependent transcriptional regulator, MalT related, LuxR family n=1 Tax=Burkholderia xenovorans LB400 RepID=Q143R8_BURXL Length = 251 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 18/174 (10%) Query: 725 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ---- 780 DL LL Y +AGR +A R A+ LA+ + F++ A+ + + Sbjct: 83 GDLVSLLLASMDAYSRAGRGREAARAFSRAISLAHPGSLVYPFILYQRAVCKVIANTRAR 142 Query: 781 ---LIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLT 837 LI+ + L+ R I + + + AH E L V E+ PLT Sbjct: 143 DFGLIRQAEISFLD--RLHEICSQSDGDALSQTAHPAE------LTAGPVDEV---QPLT 191 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 RE Q+L L+ G SN+ +A +L ++ T+K H+RNLY KLGV +R A+ A+ Sbjct: 192 ARETQLLRLVNEGLSNQTVADQLSLSLPTVKWHLRNLYDKLGVRNRSAALAKAR 245 >UniRef50_Q3M2P3 Two component transcriptional regulator, LuxR family n=3 Tax=Nostocaceae RepID=Q3M2P3_ANAVT Length = 220 Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 5/108 (4%) Query: 790 LEQHRAQRILREINQHHRHKFAHFDENFVER----LLNHPEVPELIRTSPLTQREWQVLG 845 L+++ I+ I + +K + FD ++R + + I LTQRE VL Sbjct: 103 LKKNNTSLIVEAIKSTYNNK-SLFDSEIIQRGLLKIFPTQKAKGKIFDDHLTQREISVLA 161 Query: 846 LIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 LI +G+SN+QI +L + T+K H RN+Y KLGV R +A+ +L Sbjct: 162 LIAAGFSNKQIGEKLFIGENTVKNHARNIYSKLGVDSRINAILKGSEL 209 >UniRef50_UPI0001B545A4 two component transcriptional regulator, LuxR family protein n=2 Tax=Streptomyces sp. AA4 RepID=UPI0001B545A4 Length = 240 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 14/177 (7%) Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 +N+ AR+L L S + ++LLL+ + D L+ A+ + + V E Sbjct: 55 INDGARALSLCSRMRPDILLLDA-------RLDVGGTLIRAVTSSPAVETVIVLVSAAEL 107 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILRE-INQHHRHKFAHFDENFVERLLNHPEVPELIR 832 + ++ + + L++ L E I Q+H + H + F P +P R Sbjct: 108 VPDRVGKFAEYGADCLLDRSIGPVKLAERIVQYH--LWGHSAQFFPA--TPEPRIPRARR 163 Query: 833 TSP--LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 S LT RE QVLGLI G +N +IA V+A T+++H++N+Y+KLG +R AV Sbjct: 164 RSSDELTLRETQVLGLISIGLTNSEIAEAQSVSAETVRSHVKNVYRKLGARNRAHAV 220 >UniRef50_C8WJ36 Transcriptional regulator, LuxR family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WJ36_EGGLE Length = 191 Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats. Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 11/100 (11%) Query: 789 ELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIY 848 ELE+ R + LR + +R +E +E H RT LT+RE +VL L+ Sbjct: 95 ELERRRVED-LRGLVDRYRT-----EEGSIESRCAHAA-----RTFDLTRREEEVLALLL 143 Query: 849 SGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 G + +IA EL V+ T+KTHIRNLY+K GV + + VQ Sbjct: 144 KGCTRSEIARELFVSGDTVKTHIRNLYRKTGVTGKDELVQ 183 >UniRef50_A7NFQ1 Transcriptional regulator, LuxR family n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NFQ1_ROSCS Length = 454 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 42/55 (76%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 L++RE ++L L+ +G +N+QIA +L ++A T+K H+RN++ K+GVA R +A +A Sbjct: 9 LSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYA 63 >UniRef50_D0YX60 Transcriptional regulator VpsT n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX60_LISDA Length = 219 Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 1/65 (1%) Query: 830 LIRTSPL-TQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 L+ T PL T+RE Q+LGL+ G +N +IA L VA TT+K+HI NLY+K+ V R++A+ Sbjct: 149 LLPTQPLLTRREKQILGLLTEGKTNIEIAETLFVAETTVKSHIYNLYKKIDVKCRKEAIF 208 Query: 889 HAQQL 893 +QL Sbjct: 209 KVKQL 213 >UniRef50_C6XUH9 Response regulator receiver n=2 Tax=Pedobacter RepID=C6XUH9_PEDHD Length = 210 Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 39/58 (67%) Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 SPLT+RE Q+L L+ G QIA EL + T+KTHI+N+Y KL V + DA++ A+ Sbjct: 148 SPLTKRETQILSLMSRGKDRSQIANELFIEIETVKTHIKNIYLKLDVNSKADAIKVAK 205 >UniRef50_A5UQJ6 Response regulator receiver protein n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UQJ6_ROSS1 Length = 471 Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 42/55 (76%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 L++RE ++L L+ +G +N+QIA +L ++A T+K H+RN++ K+GVA R +A +A Sbjct: 9 LSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMYA 63 >UniRef50_Q6ACS4 Transcriptional regulator, LuxR family n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6ACS4_LEIXX Length = 845 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 104/436 (23%), Positives = 163/436 (37%), Gaps = 63/436 (14%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG----WYSLD 65 P R H + R RL +L A L ++ +PAG GKT L++ W + G W +L Sbjct: 12 PRRPAHFLPRPRLTERLDTAAP--LVVVRAPAGAGKTVLLADWCTRRRSAGDTVLWVTLT 69 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA-EWHSPLY 124 G +R A L AAV H AS F + + LA P+ Sbjct: 70 AGSAHADRAADQLWAAVAAQVGAH------------SASPADAFDAVRLALAGTVGPPVR 117 Query: 125 LVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQL 184 L +D Y + P + R + + + +R L + + +G L Sbjct: 118 LTLDGYCPVRAPADPDIARLL--ETCPRVQVAIGTRALTSFEDVAVAASLDVECLGPDDL 175 Query: 185 AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 FT +E+ + D A E V GW +++ L+A RL Sbjct: 176 LFTAEESARLVDA------IAGEDRPPRPSVPGWEEGERVLPLTA------------RLT 217 Query: 245 GINASHLSD-YLVDEVLDNVDLATR------HFLLKSAILRSMNDALITRVTGEENGQMR 297 G+ D + V E L L R FL + + + L R+TG ++ Sbjct: 218 GVGIRRGFDPHAVAEALLRRQLGERPCPELTRFLRVISSVSPCDSELARRLTGLDSPDPL 277 Query: 298 LEEIERQGLFLQRMDDTGEW----FCYHPLFGNFL-RQRCQWELAAELPEIHRA--AAES 350 E QGL R GEW F P L RQR AAE E R+ S Sbjct: 278 FRAAEEQGLGTWR----GEWPRRQFVLDPAAAVALARQRS----AAEPREAMRSLRVVCS 329 Query: 351 W-MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 W + G A++ A+AA + L++ + AW + + + L+ L + L P Sbjct: 330 WALETGDHVRALNAAVAAREPLLVSRV-AREAWEPLSTVSATATVDLLERLGGEELERFP 388 Query: 410 QLVLLQAWLMQSQHRY 425 + +L A + ++ ++ Sbjct: 389 VIAVLYALALSTREQH 404 >UniRef50_D0LDI8 Regulatory protein LuxR n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LDI8_GORB4 Length = 271 Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 5/89 (5%) Query: 806 HRHKFAHFDENFVE--RLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVA 863 H F H D + R + +PE +P +R VL + SGY+ +QIAG L V+ Sbjct: 182 HVGTFGHLDALAAKAMRAIRAQALPEQFHLTPSERR---VLDFLPSGYTADQIAGMLSVS 238 Query: 864 ATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 T+KTH R++Y+KL V+ R+DAV A++ Sbjct: 239 VNTVKTHSRSIYRKLQVSTRRDAVMVARR 267 >UniRef50_C1ADB1 Putative NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ADB1_GEMAT Length = 239 Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 39/60 (65%) Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 +PLT RE +LGL+ +G SN+ IAGEL + TT+K H+ + +KLGV R +A + + Sbjct: 171 APLTSREQDILGLLVTGCSNKVIAGELHIQTTTVKNHVHRILEKLGVRTRIEAAARVRSM 230 >UniRef50_C3JFP5 Regulatory protein, LuxR n=2 Tax=Rhodococcus erythropolis RepID=C3JFP5_RHOER Length = 484 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 43/63 (68%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 LT+RE ++L + + + ++IA L +A T+KTHIR++Y+KLGV R+ AVQ A L + Sbjct: 407 LTEREKEILTFLRTTMTADEIAAHLGIAYPTVKTHIRSIYRKLGVTKRRAAVQAADNLDR 466 Query: 896 MMG 898 +G Sbjct: 467 GVG 469 >UniRef50_Q1N2F1 Regulatory protein CsgD n=1 Tax=Bermanella marisrubri RepID=Q1N2F1_9GAMM Length = 216 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 42/70 (60%) Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 P PE LT+RE Q+L L SG N IA L V+ T+KTH+ NL++KL V++R Sbjct: 141 PPAPEQKPAHNLTRRESQILSLSASGAKNADIAAALNVSTHTVKTHMYNLFKKLDVSNRI 200 Query: 885 DAVQHAQQLL 894 AV A++ L Sbjct: 201 QAVNWAKEYL 210 >UniRef50_A3U0W9 Two-component response regulator n=6 Tax=Rhodobacterales RepID=A3U0W9_9RHOB Length = 213 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 23/120 (19%) Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 + +QLRQ+ ++ +P L A+RI+ HF RL P + Sbjct: 111 LIRQLRQI--MDGVPALSPAIARRIMH-----------HF------RLTG----PLTGQD 147 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 + LT RE +VLGLI G N ++A EL +A +T+ ++++ Y+KLG++ R +A HA +L Sbjct: 148 AALTDREREVLGLIGRGLRNAEVAAELGIAVSTVAGYVKDTYRKLGISSRAEAAWHATRL 207 >UniRef50_B2UD70 Transcriptional activator domain n=1 Tax=Ralstonia pickettii 12J RepID=B2UD70_RALPJ Length = 1071 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 108/433 (24%), Positives = 171/433 (39%), Gaps = 40/433 (9%) Query: 5 SKLSRPVRLDHTVVRERLLAKLS-GANNFRLALITSPAGYGKTTL-ISQWAAGKNDIGWY 62 SK++RP + V+R R+L ++ G + + SPAG GKT L IS A WY Sbjct: 8 SKINRP-QSGGIVLRPRVLNRIGRGFAASPIVWVASPAGSGKTKLAISYLEASGLPAIWY 66 Query: 63 SLDEGDNQQERF--------ASYLIA--AVQQATNGHCAICETMAQKRQYASLTSLFAQL 112 +D GD F A++L A A Q + + A R+Y F L Sbjct: 67 EVDAGDMDPASFFRTFGQACAAHLGADSATQPPLFSPDHLFDLAAFARRY------FRAL 120 Query: 113 FIELAEWHSPLYLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR 171 F L E LV+++ H P ++ + E++ ++VLSR+ P +A L+ Sbjct: 121 FSGLPE---ATLLVLENVHAAEAEPSFKGILQAALAEASEHVRILVLSRSAPPPELARLQ 177 Query: 172 VRDQLLEIGSQQLAFTHQEAKQFF---DCRLSSPIEAAESSR-----ICDDVSGWATALQ 223 QL + Q L T +E L++ + ++ R + GW A+ Sbjct: 178 ANQQLALVDWQHLRLTEEETGAILAGHPAALATLEQRPDAERELAGGLHARSGGWVAAVV 237 Query: 224 LIALS-ARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMND 282 L+ R ++ + R L Y E++ R FLL +AIL + + Sbjct: 238 LLLDQIGRVGSYDVDRLDSR------EVLFPYFAQEMIVAASPELRRFLLCTAILPNFDL 291 Query: 283 ALITRVTGEENGQMRLEEIERQGLFLQRM-DDTGEWFCYHPLFGNFLRQRCQWELAA-EL 340 A ++TG + + Q F+ + G + YH LF FL R +A E Sbjct: 292 AEARQLTGSTDVDHFVTSAHCQQYFIDQFGSGAGASYQYHALFREFLLSRLPDAFSADER 351 Query: 341 PEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKAL 400 ++ AA A+G + A AG L + L HA + L + L L Sbjct: 352 QQLTANAAALLEARGELAGAGELLADAGLMPQLAALALRHAPMVLQQGRYRTLSDLLGQL 411 Query: 401 PWDSLLENPQLVL 413 P L +P L+ Sbjct: 412 PTAVLNADPWLLF 424 >UniRef50_D2S488 Transcriptional activator domain protein n=2 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S488_9ACTO Length = 1025 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 92/218 (42%), Gaps = 29/218 (13%) Query: 17 VVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG------WYSLDEGDNQ 70 +VR RLL +L RL + +PAG+GKTTL++Q A +N + W + D Sbjct: 17 IVRPRLLHRLHSRFERRLTAVVAPAGFGKTTLLAQ-AVQENTLSPLGEDRWLTCQRDDTS 75 Query: 71 QERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDY 130 A+ AAV + + Q + A++T A+ A H L L++DD Sbjct: 76 LSFLAAGAFAAV--------GLTAPVPQDPREAAVT--VAEAIWSAAPRH--LALILDDV 123 Query: 131 HLI--TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTH 188 HL+ +P H + + P N +V+ SR L + L + + +G +L F Sbjct: 124 HLVRPGSPGGH-FVAELVEELPRNGHVVLASRPPLPLRASRLLASGEAVVLGETELHFAR 182 Query: 189 QEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIA 226 +E F R P + DV GW +L A Sbjct: 183 EEMAAFAASRQVPP-------DLLRDVGGWPALAELTA 213 >UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteria RepID=C1F9F6_ACIC5 Length = 213 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 36/59 (61%) Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 S LT RE VL LI G SN +IA +L ++ T+KTHI NL KLGV+ R A A Q Sbjct: 148 SELTARELDVLRLIVQGRSNREIAADLHISEATVKTHINNLLSKLGVSDRTQAATTALQ 206 >UniRef50_Q2W7W6 Response regulator n=2 Tax=Magnetospirillum RepID=Q2W7W6_MAGSA Length = 209 Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 38/52 (73%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 LT RE ++L + G +N+Q+AG+L+++ T+K H++NLY KLGV +R AV Sbjct: 148 LTPRERELLAALAGGLTNQQMAGQLDISLNTVKFHLKNLYDKLGVGNRAQAV 199 >UniRef50_A7VGK0 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VGK0_9CLOT Length = 500 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 95/224 (42%), Gaps = 20/224 (8%) Query: 672 WLRHTAKPEFANNHFLQGQ--WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 729 WL A P+ F+ W R I G++ A ++ +L R DL Sbjct: 292 WLDDIA-PDENKGIFMMDMYAWMVKVRCYIQTGKYMAAYVLTHQLIALLIPGRRYMDLCE 350 Query: 730 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 789 +L +Y++ L A+ LA R G+I G M Q L T+ + Sbjct: 351 CYMLSAIIYYKMKNMEGMCEELSKAIVLAKRCGYIRLLADTGNCMVQML-------TIYQ 403 Query: 790 LEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYS 849 +++ + EI + +F ++++ + E PLTQ E +V L+ Sbjct: 404 -KEYEEDSFISEIKELAYSVGTYF-PDYLKSPYEYYE--------PLTQMEEKVFRLMAQ 453 Query: 850 GYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 G SN+ IA +L T+K H N+++KL V RQ+AV+ +++ Sbjct: 454 GLSNDDIARQLGKKTGTVKFHSCNIFRKLQVPTRQEAVERGREI 497 >UniRef50_C4DI56 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DI56_9ACTO Length = 235 Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 28/57 (49%), Positives = 40/57 (70%) Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 + LT RE +VL L+ +G SN +IA +L VA T+KTH+ +L++KLGVA R A +A Sbjct: 145 AALTAREREVLALVAAGRSNREIAKQLSVAEKTVKTHLSSLFRKLGVADRTQAALYA 201 >UniRef50_B8G436 Transcriptional regulator, LuxR family n=3 Tax=Chloroflexus RepID=B8G436_CHLAD Length = 508 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 41/57 (71%) Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 SP+++RE ++L L+ +G +N+QIA L ++ T+K H+RN++ K+GV R +A +A Sbjct: 5 SPISEREREILRLVATGATNQQIAVALNISVNTVKVHLRNIFAKIGVESRTEATVYA 61 >UniRef50_B8HY00 Two component transcriptional regulator, LuxR family n=10 Tax=Cyanobacteria RepID=B8HY00_CYAP4 Length = 236 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 39/68 (57%) Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 PE +++ SPLT+RE +VL LI G SN IA +L + T+KTH+RN+ KL Sbjct: 162 TEPEYSQILEASPLTERELEVLQLIVEGDSNALIAEKLFITVGTVKTHVRNILNKLCADD 221 Query: 883 RQDAVQHA 890 R A A Sbjct: 222 RTQAAVRA 229 >UniRef50_A1UDE3 Two component transcriptional regulator, LuxR family n=3 Tax=Mycobacterium RepID=A1UDE3_MYCSK Length = 163 Score = 56.6 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 5/105 (4%) Query: 790 LEQHRAQRILREINQHHRHKFAHFDENFVERLLN----HPEVPELIRTSPLTQREWQVLG 845 L+ A+ ++R + R ++ D R+LN P++P + + LT RE VL Sbjct: 51 LKDSSAEELIRAVRAVARGD-SYLDPAVTARVLNTYRRAPDMPRALTSVDLTTRELDVLR 109 Query: 846 LIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 LI GYSN +IA EL ++ T+K+HI +++ KL + R A+ ++ Sbjct: 110 LIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYS 154 >UniRef50_D0XHY9 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XHY9_VIBHA Length = 222 Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 43/63 (68%) Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 ++ LT+RE Q+L I G SN +IA L VA +T+KTH+ LY+KL V+ R++A+Q + Sbjct: 154 SNTLTKREKQILDRIVQGQSNLEIADALFVAESTVKTHVYKLYKKLNVSCRKEAIQKFSR 213 Query: 893 LLK 895 L+ Sbjct: 214 PLR 216 >UniRef50_D1XHI5 Two component transcriptional regulator, LuxR family n=4 Tax=Streptomyces RepID=D1XHI5_9ACTO Length = 222 Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 36/55 (65%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 LT RE +VL LI G SN +IA L V+A T+KTHI NL+ K G R AV++A Sbjct: 154 LTPREAEVLVLIAEGLSNREIARALHVSAATVKTHINNLFAKTGARDRTQAVRYA 208 >UniRef50_C6XYL1 Regulatory protein LuxR n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XYL1_PEDHD Length = 151 Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 4/72 (5%) Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 LN E+ +L L RE+++L L+ G+SN +IAG+L ++ +T+KTH+ NL+ K+ V Sbjct: 80 LNEKELEKL----NLNSREYEILQLLAKGHSNAEIAGDLFISLSTVKTHVSNLFVKMNVK 135 Query: 882 HRQDAVQHAQQL 893 R A++ A++L Sbjct: 136 SRIKALEKAKRL 147 >UniRef50_UPI0001C37F7A transcriptional regulator, LuxR family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37F7A Length = 253 Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 22/112 (19%) Query: 794 RAQRILREINQHHRHKFAHFDE--------------NFVERLLNHPE--------VPELI 831 R RI+ EIN + FDE N V RL+++ + + + + Sbjct: 131 RNDRIICEINLFRDEESGDFDERDMFILNIFKNHLENIVCRLIDYDKNSSPFGNGIKKAV 190 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 LT RE QVL LI SG SN+ IA L ++ +T+K HI NL+ K+ V R Sbjct: 191 SKYELTTREAQVLELICSGESNQNIANILSISVSTVKKHIYNLFDKISVQSR 242 >UniRef50_UPI0000382D84 COG2909: ATP-dependent transcriptional regulator n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382D84 Length = 122 Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 41/65 (63%) Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 P + S L+ RE +VL + G++ EQ A V+ TI+T IR LY+KLGV+ R++AV Sbjct: 13 PPVTLASRLSPRERKVLRSLSEGFTAEQTAARFNVSVNTIRTQIRTLYRKLGVSSRREAV 72 Query: 888 QHAQQ 892 AQ+ Sbjct: 73 AVAQE 77 >UniRef50_Q39P16 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Burkholderia sp. 383 RepID=Q39P16_BURS3 Length = 932 Score = 55.8 bits (133), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 16/136 (11%) Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHK-FAHFDENFVER 820 GF+ V EG +A QL Q + A R + + + H A FD VER Sbjct: 805 GFVRMLVDEGP-LAAQLALRCQADG--------ATRARDPLLEEYLHACIAPFD---VER 852 Query: 821 LLNHPEVPELIRTSP---LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQK 877 VPE P LT++E +VL L+ GYSN +A +L V+ +T++TH+RN+ K Sbjct: 853 EAPPASVPEDGTALPAESLTRKELRVLQLLAQGYSNGALAEKLFVSDSTVRTHLRNINAK 912 Query: 878 LGVAHRQDAVQHAQQL 893 L V +R AV ++L Sbjct: 913 LNVPNRTSAVAAGRRL 928 >UniRef50_B5G749 Two-component system response regulator n=1 Tax=Streptomyces sp. SPB74 RepID=B5G749_9ACTO Length = 259 Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 29/55 (52%), Positives = 36/55 (65%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 LT RE +VL LI G SN IA L V+A T+KTHI NL+ K G+ R AV++A Sbjct: 191 LTAREVEVLVLIAQGLSNADIARALHVSAATVKTHINNLFAKAGLRDRAQAVRYA 245 >UniRef50_Q7NMF3 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NMF3_GLOVI Length = 212 Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 4/90 (4%) Query: 807 RHKFAHFDENFVERLL-NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAAT 865 R A D + +R+L + +P+ +PL++RE +VL LI G +N +I L +A+ Sbjct: 121 RDGAAWLDPDIADRVLRDLGRIPQAGADNPLSEREMEVLKLIADGLTNAEIGRRLYIASG 180 Query: 866 TIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 T++ H+ N+ KLGV D VQ A + L+ Sbjct: 181 TVRVHVSNIIAKLGV---NDRVQAAVRALR 207 >UniRef50_Q0AV95 ATP-dependent transcriptional regulator-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AV95_SYNWW Length = 838 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 14/220 (6%) Query: 13 LDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG--KNDIGWYSLDE---G 67 L+ + ERL +L+ N + + + +P G+GKTT ++ WA KN L + Sbjct: 7 LNDIFMSERLKQRLNEINTYPITTVIAPMGFGKTTAMNWWAKRQVKNQADAVILRQIIVT 66 Query: 68 DNQQERFASYLIAAVQQATNGHCAICETMAQ--KRQYASLTSLFAQLFIE-LAEWHSPLY 124 D+ + + + +A G+ + E M Q AS S+ A+L + L+ S +Y Sbjct: 67 DSITDFWMGFC-----RAFKGYPELTEQMKALGYPQDASAISMLAELLDDALSPSASQIY 121 Query: 125 LVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQL 184 +V+DD H++ + + F R P+++ +++LSRN +R+ + L EI + L Sbjct: 122 MVMDDLHILQQKPLTPLLLFLSRSLPDSVHIILLSRNQILNEEERMRLGNLLGEITADDL 181 Query: 185 AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQL 224 + QE + R A E + + GW + + L Sbjct: 182 RLSQQELAVYAK-RCGLEPSAEEINVLATLTEGWISMVYL 220 >UniRef50_C3JUK9 LuxR-family transcriptional regulator n=2 Tax=Rhodococcus erythropolis RepID=C3JUK9_RHOER Length = 883 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 42/66 (63%) Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 PE + LT+RE +VL L+ G + +A +L V+ T+KT +R LY+KL V +R +A+ Sbjct: 815 PEFVHIVELTEREQKVLSLLALGMGSAAMADKLYVSVNTVKTQLRTLYKKLDVHNRNEAI 874 Query: 888 QHAQQL 893 A+QL Sbjct: 875 TRARQL 880 >UniRef50_A5VA51 Transcriptional regulator, LuxR family n=2 Tax=Alphaproteobacteria RepID=A5VA51_SPHWW Length = 146 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 42/66 (63%) Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 P+ I + +T RE VL + +G SN++IA L V+ T+KTH+ L++KLG A R DA+ Sbjct: 77 PQAIESLGITPRELAVLRELAAGRSNKEIAIRLAVSPNTVKTHVARLFEKLGAARRTDAL 136 Query: 888 QHAQQL 893 A+ L Sbjct: 137 ARARAL 142 >UniRef50_A9WVF8 Two component response regulator n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WVF8_RENSM Length = 225 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 12/96 (12%) Query: 797 RILREINQHHRHKFAHFDENFVERLLN-----HPEVPELIRTSPLTQREWQVLGLIYSGY 851 RIL I + A FD RL++ P PEL T+RE ++L LI +G Sbjct: 128 RILAAIRSTASGQ-ATFDVAVARRLISGLKPSKPSFPEL------TERESEILALIAAGR 180 Query: 852 SNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 +N++IA E V+ T+KTHI N++ KL + R A+ Sbjct: 181 NNQEIAQESFVSVATVKTHINNIFAKLQLRDRAQAI 216 >UniRef50_Q0S5A4 Response regulator, two-component system n=4 Tax=Actinobacteria (class) RepID=Q0S5A4_RHOSR Length = 211 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 39/57 (68%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 L+ RE +VL LI G S IAGEL +A +T+KTH++ LY+KLGV+ R AV A + Sbjct: 150 LSGREKEVLALIARGQSIPTIAGELYLAPSTVKTHVQRLYEKLGVSDRAAAVAEAMR 206 >UniRef50_Q11ZX7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Polaromonas sp. JS666 RepID=Q11ZX7_POLSJ Length = 397 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 38/55 (69%) Query: 837 TQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 T+RE Q+LGL+ G SN ++AG L + T+K H+ N+Y KLGV +R A++ A+ Sbjct: 338 TERELQILGLLADGLSNGEVAGRLVLTEGTVKWHLHNIYAKLGVKNRTGALREAR 392 >UniRef50_A5URG0 Response regulator receiver protein n=2 Tax=Roseiflexus RepID=A5URG0_ROSS1 Length = 204 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/53 (49%), Positives = 38/53 (71%) Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 PLT RE VL L+ G SN+QIA +L+++ T+K H+ +L+ KLGV+ R +AV Sbjct: 141 PLTARERDVLELVSQGLSNKQIAQKLQISEHTVKFHLSSLFAKLGVSSRTEAV 193 >UniRef50_D1W148 Transcriptional regulator, LuxR family n=3 Tax=Prevotella RepID=D1W148_9BACT Length = 221 Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 38/56 (67%) Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 P +P++++ L+ RE +VL LI GY N++IA L + TT+ TH +N+ +KLGV Sbjct: 145 PPLPKVLKKKVLSDREIEVLSLIVQGYINKEIADRLNIGMTTVITHRKNIMEKLGV 200 >UniRef50_A8VQD5 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VQD5_9BACI Length = 216 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 38/171 (22%) Query: 731 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEL 790 LLL LY + A ++ + + + G+ V EG+ + + L Sbjct: 67 FLLLMWLYQRKNMPEMADDLMREMIPICRSCGYRQTIVDEGDIVQESL------------ 114 Query: 791 EQHRAQRILREINQHHRHKFAHFDENFVERLLNH----------PEVPELIRTSPLTQRE 840 I +R F D + +LL+ P +PE PL+ RE Sbjct: 115 -----------IRLRNRQTFLPDDSLYAGQLLDTLQPQAATSEAPLLPE-----PLSSRE 158 Query: 841 WQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 VL LI G +N+ IA L ++ T+K H N+Y KLGV+ R +AV A+ Sbjct: 159 LDVLRLIMKGLTNKLIADSLYLSTGTVKWHTTNIYGKLGVSRRTEAVAKAR 209 >UniRef50_Q1N3B3 Regulatory protein, LuxR n=1 Tax=Bermanella marisrubri RepID=Q1N3B3_9GAMM Length = 753 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 43/62 (69%) Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 R + LT +E +VL L+ G SN++IA ++ VAATTIK H++N+Y+KL + R AV + Sbjct: 686 RYNELTNKEKEVLMLLAQGLSNQEIADDMAVAATTIKWHLKNIYRKLSLDSRSAAVAYMH 745 Query: 892 QL 893 ++ Sbjct: 746 RI 747 >UniRef50_Q1ARX2 Transcriptional regulator, LuxR family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ARX2_RUBXD Length = 781 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 40/59 (67%) Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 +PLT RE +VL L+ G ++ Q+AG L V+ T+ H+R++ +KLGV R AV+ AQ+ Sbjct: 718 APLTPRELEVLRLVGEGMTDAQVAGRLFVSTRTVNAHLRSILRKLGVRSRAAAVRLAQE 776 >UniRef50_C0ZSB6 Putative LuxR family transcriptional regulator n=2 Tax=Rhodococcus erythropolis RepID=C0ZSB6_RHOE4 Length = 238 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 811 AHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTH 870 AH + V+R+ E E R LT RE++++GL+Y G + + IA +A TT++ H Sbjct: 142 AHEKSSLVQRIRLRTE--ESARIGSLTDREFEIVGLLYGGSNVDSIARTAHIAPTTVRAH 199 Query: 871 IRNLYQKLGV 880 +R++ QKLGV Sbjct: 200 VRSILQKLGV 209 >UniRef50_UPI0001BC339C LuxR family transcriptional regulator, maltose regulon positive regulatory protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC339C Length = 824 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 75/341 (21%), Positives = 146/341 (42%), Gaps = 54/341 (15%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA------------ 53 K++ P + + ERL K+ + + +I +PAGYGKT S ++ Sbjct: 2 KINDPDGENIIYINERLRNKIDKIPLYDITVIDAPAGYGKTEAASFFSKEHKDKVRTISV 61 Query: 54 -AGKNDIGWYSLDEGDNQQERFASYLIAAVQQATN-GHCAICETMAQKRQYASLTSLFAQ 111 + +I +Y L + Q + AS L+ ++ N GH +A+ R+ Sbjct: 62 LSSSTEIFFYDLCDALGQYDSGASVLLKSIGFPKNDGH------IAKIRE---------- 105 Query: 112 LFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR 171 I+ L++VID+YHL++ + + + + +++ + + N Sbjct: 106 -IIKNIRLQDELFIVIDNYHLVSCDEFNTLISSLAGNMNNKIHFIMIMSYIDSQIVRNGV 164 Query: 172 VRDQLLEIGSQQLAFTHQEAKQFFDCRLS-SPIEAAESSRICDDVSGWATALQLIALSAR 230 +L IG + AFT + +++ RL+ S I ES+ I G+ T+++L L + Sbjct: 165 ESGNILYIGKEYFAFTQDDICEYY--RLNGSDINEEESNAIYGLTKGFVTSIELSLL--Q 220 Query: 231 QNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG 290 Q K + + L D L D+ + + L F++ S ++ + D I+ +T Sbjct: 221 QKVDIKDKIIKNI-------LWDRLSDKTKERLMLL---FIIDSVSIKEIMDFKISLMTE 270 Query: 291 EENGQMRLEEIERQGLFLQRMDDTGEW-FCYHPLFGNFLRQ 330 +E L F++ DTG+ +C +F +FL++ Sbjct: 271 KE-----LLLFMNTSYFIEY--DTGKCRYCIRDIFKDFLKE 304 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 36/57 (63%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 LT RE +V L SN++IAGEL +A +T+K+ ++ ++ KL + RQD + ++ Sbjct: 767 LTARELEVAKLAAGRLSNKEIAGELFIAESTVKSTMKTIFNKLDINKRQDLMNFFKE 823 >UniRef50_A0QNN3 DNA-binding response regulator, LuxR family protein n=5 Tax=Mycobacterium RepID=A0QNN3_MYCS2 Length = 216 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 6/73 (8%) Query: 820 RLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 R N P+VP L SP RE +VL LI G S +A EL +A +T+KTH++ LY+KLG Sbjct: 145 RRRNEPDVPVL---SP---REREVLNLIAQGRSIPAMAKELYLAPSTVKTHVQRLYEKLG 198 Query: 880 VAHRQDAVQHAQQ 892 V+ R AV A + Sbjct: 199 VSDRAAAVAEAMR 211 >UniRef50_A1SMX9 Regulatory protein, LuxR n=1 Tax=Nocardioides sp. JS614 RepID=A1SMX9_NOCSJ Length = 215 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/59 (49%), Positives = 40/59 (67%) Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 +L R LT RE VLGLI +G SNE++A EL ++ T+K+ IR++Y+KL V R AV Sbjct: 136 QLGRDVNLTPREQDVLGLIVAGCSNEELAAELYLSINTVKSLIRSVYRKLEVTSRAQAV 194 >UniRef50_A8TBQ1 Regulatory protein CsgD n=3 Tax=Vibrio RepID=A8TBQ1_9VIBR Length = 213 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 3/75 (4%) Query: 817 FVERLLN---HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRN 873 ++E L+N H + + LT RE Q+L L+ G SN+QIA +L ++ +T+K+HI Sbjct: 128 YLEALINNYRHSNISMDSQHDSLTSRERQILELLAYGISNQQIASQLFLSESTVKSHIYK 187 Query: 874 LYQKLGVAHRQDAVQ 888 LY+KL V R DA++ Sbjct: 188 LYKKLDVHCRNDAIK 202 >UniRef50_B7GKV4 Transcriptional regulator LuxR family n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GKV4_ANOFW Length = 194 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLL 894 L++RE QV L+ GYSN++IA EL ++ TIK HI NL+QKL V R + + LL Sbjct: 136 LSERERQVFFLLLKGYSNKEIAKELILSEHTIKNHINNLFQKLDVKRRSQLIAKFKHLL 194 >UniRef50_UPI0001B5426C two-component system response regulator n=1 Tax=Streptomyces sp. C RepID=UPI0001B5426C Length = 224 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 36/57 (63%) Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 S L+ RE +VL L+ SN QIA EL VA T+K H+RN+++KL R DAV A Sbjct: 152 SGLSPREREVLTLVAHAMSNRQIASELGVAEGTVKRHLRNIFEKLEAVSRVDAVNKA 208 >UniRef50_B9VAR7 OtcG n=1 Tax=Streptomyces rimosus RepID=B9VAR7_STRRM Length = 237 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 T+ L+ RE Q++ + G SN QIA L + T+K H+ N+++KLG R DAV A+ Sbjct: 145 TARLSARELQIMENVARGLSNSQIAARLTITEATVKRHLSNVFEKLGAVSRIDAVNKAKS 204 Query: 893 LL 894 +L Sbjct: 205 ML 206 >UniRef50_A4BEK3 Putative transcriptional regulator, LuxR family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BEK3_9GAMM Length = 218 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 40/62 (64%) Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 + + LT ++ VL LI GY N+QIA EL++ TT+KTH+ +++KLG+ +R A Q Sbjct: 153 KLASLTPKQQHVLSLISRGYLNKQIAYELDIKETTVKTHVSEIFRKLGIFNRTQAAIFNQ 212 Query: 892 QL 893 L Sbjct: 213 YL 214 >UniRef50_C7QAL7 Transcriptional regulator, LuxR family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QAL7_CATAD Length = 884 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 39/61 (63%) Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 + P + E +R SPLT+RE +V L+ +G+SN QIA L V+ T++ H+ KLGVA Sbjct: 810 DTPALREALRPSPLTEREREVAALVAAGHSNRQIAEHLVVSVRTVEGHVYRACVKLGVAD 869 Query: 883 R 883 R Sbjct: 870 R 870 >UniRef50_A0PL56 Nitrate/nitrite response regulator protein NarL n=21 Tax=Actinomycetales RepID=A0PL56_MYCUA Length = 216 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 29/57 (50%), Positives = 38/57 (66%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 L+ RE +VL I G S IAGEL VA +T+KTH++ LY+KLGV+ R AV A + Sbjct: 155 LSAREREVLHRIAKGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMR 211 >UniRef50_A4U0R2 DNA-binding response regulator, LuxR family n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U0R2_9PROT Length = 228 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 40/55 (72%) Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 L++RE ++L L+ G +N++IA LE+ TIK H+RN+Y+K+G A+R AV+ A Sbjct: 160 LSRRESEILALLVEGRTNKEIAIALELQEITIKVHLRNVYRKIGAANRAQAVRIA 214 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A8GKU0 HTH-type transcriptional regulator malT n=171 Ta... 928 0.0 UniRef50_A7N5N6 HTH-type transcriptional regulator malT n=66 Tax... 835 0.0 UniRef50_Q2SPN4 Maltose regulon positive regulatory protein MalT... 721 0.0 UniRef50_A4VQ60 ATP-dependent transcriptional regulator n=4 Tax=... 687 0.0 UniRef50_B8CZU7 Regulatory protein LuxR n=3 Tax=Firmicutes RepID... 674 0.0 UniRef50_C0Z8V4 Probable transcriptional regulator n=2 Tax=Bacil... 654 0.0 UniRef50_B0C3T1 Transcriptional regulator, LuxR family with TPR ... 642 0.0 UniRef50_Q2SEA9 ATP-dependent transcriptional regulator n=1 Tax=... 639 0.0 UniRef50_C4X459 Trans-acting regulatory protein of aco operon n=... 638 0.0 UniRef50_A9WHL2 Regulatory protein LuxR n=3 Tax=Chloroflexaceae ... 634 e-180 UniRef50_C0Z6I1 Probable transcriptional regulator n=1 Tax=Brevi... 628 e-178 UniRef50_A1U0Z9 Regulatory protein, LuxR n=2 Tax=Marinobacter Re... 622 e-176 UniRef50_C5RKV5 ATP-dependent transcriptional regulator, MalT-li... 620 e-176 UniRef50_D1RTE8 Transcriptional regulatory protein n=1 Tax=Serra... 618 e-175 UniRef50_A7NS05 ATP-dependent transcriptional regulator, MalT-li... 616 e-174 UniRef50_A9AVE7 ATP-dependent transcriptional regulator, MalT-li... 596 e-168 UniRef50_B8G442 ATP-dependent transcriptional regulator, MalT-li... 585 e-165 UniRef50_Q396V4 ATP-dependent transcriptional regulator, MalT-li... 585 e-165 UniRef50_Q0K1J2 Transcriptional regulator, LuxR-family n=1 Tax=R... 581 e-164 UniRef50_A9B4I5 ATP-dependent transcriptional regulator, MalT-li... 579 e-163 UniRef50_C6CXC3 ATP-dependent transcriptional regulator, MalT-li... 579 e-163 UniRef50_A9B6R2 ATP-dependent transcriptional regulator, MalT-li... 578 e-163 UniRef50_A4BAG8 ATP-dependent transcriptional regulator n=1 Tax=... 565 e-159 UniRef50_C0ZJP0 Probable transcriptional regulator n=1 Tax=Brevi... 560 e-158 UniRef50_Q46V70 Regulatory protein, LuxR:Tetratricopeptide TPR_4... 559 e-157 UniRef50_C1DE28 Transcriptional regulatory protein AcoK, LuxR fa... 557 e-157 UniRef50_B5WTD5 ATP-dependent transcriptional regulator, MalT-li... 556 e-156 UniRef50_C8X673 ATP-dependent transcriptional regulator, MalT-li... 554 e-156 UniRef50_Q2JAS8 ATP-dependent transcriptional regulator, MalT-li... 550 e-154 UniRef50_Q21ZR3 ATP-dependent transcriptional regulator, MalT-li... 547 e-154 UniRef50_A7NKK5 ATP-dependent transcriptional regulator, MalT-li... 546 e-153 UniRef50_Q390G0 ATP-dependent transcriptional regulator, MalT-li... 538 e-151 UniRef50_A9B3X7 ATP-dependent transcriptional regulator, MalT-li... 537 e-151 UniRef50_C6PN74 ATP-dependent transcriptional regulator, MalT-li... 534 e-150 UniRef50_C6D3K4 ATP-dependent transcriptional regulator, MalT-li... 534 e-150 UniRef50_B8KM86 Transcriptional regulator n=3 Tax=Gammaproteobac... 533 e-149 UniRef50_B1KGF0 ATP-dependent transcriptional regulator, MalT-li... 531 e-149 UniRef50_Q1D1L7 Transcriptional regulator, LuxR family n=1 Tax=M... 518 e-145 UniRef50_C8XKI9 ATP-dependent transcriptional regulator, MalT-li... 517 e-145 UniRef50_Q1N117 Probable transcriptional regulator n=1 Tax=Berma... 517 e-144 UniRef50_C8SFS0 ATP-dependent transcriptional regulator, MalT-li... 515 e-144 UniRef50_Q1LAZ5 ATP-dependent transcriptional regulator, MalT-li... 512 e-143 UniRef50_UPI000178942B ATP-dependent transcriptional regulator, ... 510 e-143 UniRef50_UPI0001789493 ATP-dependent transcriptional regulator, ... 508 e-142 UniRef50_A2SJY0 ATP-dependent transcriptional regulator-like pro... 507 e-142 UniRef50_Q21QQ8 ATP-dependent transcriptional regulator, MalT-li... 503 e-140 UniRef50_D1UL69 ATP-dependent transcriptional regulator, MalT-li... 503 e-140 UniRef50_C6XP68 ATP-dependent transcriptional regulator, MalT-li... 502 e-140 UniRef50_A9BM99 ATP-dependent transcriptional regulator, MalT-li... 500 e-140 UniRef50_Q0KDB0 Transcriptional regulator, LuxR-family n=1 Tax=R... 496 e-138 UniRef50_B6IXM7 Transcriptional regulator, LuxR family protein n... 492 e-137 UniRef50_B1IL87 Transcriptional regulator, LuxR family n=5 Tax=C... 490 e-137 UniRef50_Q2SM19 ATP-dependent transcriptional regulator n=1 Tax=... 490 e-136 UniRef50_A2SE70 ATP-dependent transcriptional regulator-like pro... 489 e-136 UniRef50_Q4ZXS3 Regulatory protein, LuxR n=22 Tax=Pseudomonas Re... 487 e-136 UniRef50_Q39P16 ATP-dependent transcriptional regulator, MalT-li... 486 e-135 UniRef50_A3TJL4 Regulatory protein, LuxR n=1 Tax=Janibacter sp. ... 485 e-135 UniRef50_C1AXQ0 Putative serine/threonine protein kinase n=2 Tax... 485 e-135 UniRef50_B2TCN8 ATP-dependent transcriptional regulator, MalT-li... 485 e-135 UniRef50_C0GFP5 Transcriptional activator domain protein n=1 Tax... 484 e-135 UniRef50_A4XVC8 Regulatory protein, LuxR n=7 Tax=Pseudomonas aer... 482 e-134 UniRef50_Q0S014 Transcriptional regulator, MalT family protein n... 480 e-134 UniRef50_Q2SIT0 ATP-dependent transcriptional regulator n=1 Tax=... 477 e-133 UniRef50_A4XVC9 Regulatory protein, LuxR n=11 Tax=Bacteria RepID... 477 e-132 UniRef50_A7HS86 Regulatory protein LuxR n=1 Tax=Parvibaculum lav... 477 e-132 UniRef50_C7RL93 ATP-dependent transcriptional regulator, MalT-li... 474 e-132 UniRef50_C1BC55 Putative serine/threonine protein kinase n=2 Tax... 472 e-131 UniRef50_Q397N7 ATP-dependent transcriptional regulator, MalT-li... 471 e-131 UniRef50_A9AZG3 ATP-dependent transcriptional regulator, MalT-li... 467 e-130 UniRef50_Q0K482 Transcriptional regulator, LuxR-family n=2 Tax=R... 462 e-128 UniRef50_Q13RN6 ATP-dependent transcriptional regulator, MalT re... 462 e-128 UniRef50_Q3BPP6 Transcriptional regulator, LuxR family n=6 Tax=X... 461 e-128 UniRef50_Q1LKC5 ATP-dependent transcriptional regulator, MalT-li... 460 e-127 UniRef50_B9K0P0 Two component response regulator n=1 Tax=Agrobac... 459 e-127 UniRef50_A4A4M2 Transcriptional regulator malT n=1 Tax=Congregib... 457 e-126 UniRef50_Q1NHC1 Regulatory protein, LuxR n=1 Tax=Sphingomonas sp... 456 e-126 UniRef50_A5V4S7 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 453 e-125 UniRef50_B0RP73 HTH-type transcriptional regulator, LuxR family ... 453 e-125 UniRef50_A0R0L7 Transcriptional regulator n=1 Tax=Mycobacterium ... 453 e-125 UniRef50_A5V8I9 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 452 e-125 UniRef50_A3I8R1 Probable transcriptional regulator, luxR family ... 452 e-125 UniRef50_C0GFG5 Transcriptional regulator, LuxR family with TPR ... 449 e-124 UniRef50_Q46UJ4 Regulatory protein, LuxR n=2 Tax=Bacteria RepID=... 448 e-124 UniRef50_Q5Z362 Putative serine/threonine protein kinase n=1 Tax... 446 e-123 UniRef50_A2SP76 ATP-dependent transcriptional regulator-like pro... 446 e-123 UniRef50_Q46TL6 Regulatory protein, LuxR:Tetratricopeptide TPR_4... 444 e-122 UniRef50_A8VQD6 MMPL domain protein n=1 Tax=Bacillus selenitired... 439 e-121 UniRef50_Q5P612 Putative regulatory protein, LuxR n=1 Tax=Aromat... 436 e-120 UniRef50_B9JN67 Transcriptional regulator protein n=2 Tax=Agroba... 434 e-120 UniRef50_B9NI01 ABC transporter family protein (Fragment) n=4 Ta... 427 e-117 UniRef50_A6CQL5 Transcriptional regulator n=1 Tax=Bacillus sp. S... 423 e-116 UniRef50_B4WXQ1 Transcriptional regulator, LuxR family protein n... 419 e-115 UniRef50_C1B9T9 Putative LuxR family transcriptional regulator n... 418 e-115 UniRef50_Q0S8R3 Transcriptional regulator n=1 Tax=Rhodococcus jo... 415 e-114 UniRef50_P95078 Probable serine/threonine-protein kinase pknK n=... 413 e-113 UniRef50_C9ZHK9 Putative transcriptional regulator n=1 Tax=Strep... 406 e-111 UniRef50_C3JMT5 Putative transcriptional regulator n=1 Tax=Rhodo... 406 e-111 UniRef50_Q0BFD2 ATP-dependent transcriptional regulator, MalT-li... 405 e-111 UniRef50_A1U449 Regulatory protein, LuxR n=2 Tax=Marinobacter Re... 405 e-111 UniRef50_Q46PW4 Regulatory protein, LuxR n=1 Tax=Ralstonia eutro... 405 e-111 UniRef50_UPI0001C312D5 ATP-dependent transcriptional regulator, ... 399 e-109 UniRef50_C0D7B4 Putative uncharacterized protein n=2 Tax=Clostri... 395 e-108 UniRef50_A5V9B6 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 394 e-108 UniRef50_C7Q4U6 ATP-dependent transcriptional regulator, MalT-li... 392 e-107 UniRef50_C8XC62 ATP-dependent transcriptional regulator, MalT-li... 391 e-107 UniRef50_A3JA10 ATP-dependent transcriptional regulator, MalT re... 390 e-106 UniRef50_C8XCA9 ATP-dependent transcriptional regulator, MalT-li... 390 e-106 UniRef50_C0ZTT3 Putative LuxR family transcriptional regulator n... 389 e-106 UniRef50_B5HWH8 LuxR-family transcriptional regulator n=9 Tax=St... 388 e-106 UniRef50_A4XRD7 Regulatory protein, LuxR n=2 Tax=Pseudomonas Rep... 388 e-106 UniRef50_Q4KI37 Transcriptional regulator, LuxR family n=3 Tax=P... 388 e-106 UniRef50_C1TP26 ATP-dependent transcriptional regulator n=1 Tax=... 380 e-103 UniRef50_Q0B0H9 ATP-dependent transcriptional regulator-like pro... 379 e-103 UniRef50_C5C615 ATP-dependent transcriptional regulator, MalT-li... 377 e-103 UniRef50_Q2B993 Transcriptional regulator n=1 Tax=Bacillus sp. N... 377 e-102 UniRef50_A9WAL3 Transcriptional activator domain n=3 Tax=Chlorof... 371 e-101 UniRef50_A6V205 Probable transcriptional regulator n=7 Tax=Bacte... 371 e-101 UniRef50_Q0BZ97 Transcriptional regulator, LuxR family n=1 Tax=H... 367 1e-99 UniRef50_Q67R98 Transcriptional regulator n=1 Tax=Symbiobacteriu... 366 2e-99 UniRef50_D2S7N2 ATP-dependent transcriptional regulator, MalT-li... 365 5e-99 UniRef50_A1HM46 Transcriptional activator domain n=1 Tax=Thermos... 365 6e-99 UniRef50_UPI0001C310C8 ATP-dependent transcriptional regulator, ... 363 1e-98 UniRef50_UPI0001C4276F hypothetical protein BpOF4_03975 n=1 Tax=... 363 1e-98 UniRef50_A8LZ74 ATP-dependent transcriptional regulator, MalT-li... 361 8e-98 UniRef50_D1CIB7 Transcriptional activator domain protein n=1 Tax... 360 1e-97 UniRef50_A5VE23 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 360 2e-97 UniRef50_B5HRX4 Transcriptional regulator n=1 Tax=Streptomyces s... 354 8e-96 UniRef50_A5VDQ9 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 354 1e-95 UniRef50_A5GAS8 Transcriptional activator domain n=1 Tax=Geobact... 353 1e-95 UniRef50_Q0B065 Putative uncharacterized protein n=1 Tax=Syntrop... 352 3e-95 UniRef50_B0FB23 Transcriptional regulator n=1 Tax=uncultured bac... 351 8e-95 UniRef50_A1RBQ1 Putative transcriptional regulator, LuxR family ... 350 1e-94 UniRef50_A5V3K4 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 345 4e-93 UniRef50_A5GBS1 Tetratricopeptide TPR_4 n=1 Tax=Geobacter uranii... 345 4e-93 UniRef50_UPI0001694022 transcriptional regulator, LuxR family pr... 344 7e-93 UniRef50_P17051 Regulatory protein alkS n=3 Tax=Pseudomonas RepI... 344 8e-93 UniRef50_A3IBY3 Transcriptional regulator n=2 Tax=Bacillaceae Re... 344 1e-92 UniRef50_Q1Q7C6 Similar to ATP dependent transcriptional activat... 343 1e-92 UniRef50_C8W196 ATP-dependent transcriptional regulator, MalT-li... 343 2e-92 UniRef50_A2SDT6 ATP-dependent transcriptional regulator-like pro... 342 4e-92 UniRef50_A0R2Z6 Putative serine/threonine protein kinase n=1 Tax... 337 1e-90 UniRef50_B0TA01 ATP-dependent transcriptional regulator, MalT-li... 336 2e-90 UniRef50_A1AUN2 Transcriptional activator domain n=1 Tax=Pelobac... 336 2e-90 UniRef50_Q1LD93 ATP-dependent transcriptional regulator, MalT-li... 336 3e-90 UniRef50_Q5YUK9 Putative transcriptional regulator n=1 Tax=Nocar... 334 8e-90 UniRef50_Q0AV95 ATP-dependent transcriptional regulator-like pro... 333 2e-89 UniRef50_B5EC60 Transcriptional activator domain n=1 Tax=Geobact... 332 3e-89 UniRef50_A5UYI0 Transcriptional activator domain n=2 Tax=Roseifl... 328 6e-88 UniRef50_A5V1C9 Transcriptional regulator n=2 Tax=Roseiflexus Re... 326 2e-87 UniRef50_UPI00006A2BBB UPI00006A2BBB related cluster n=1 Tax=Xen... 326 2e-87 UniRef50_C6PMR7 ATP-dependent transcriptional regulator, MalT-li... 322 4e-86 UniRef50_A1TX00 ATP-dependent transcriptional regulator-like n=1... 322 4e-86 UniRef50_B8DMH8 ATP-dependent transcriptional regulator, MalT-li... 320 2e-85 UniRef50_UPI0001C32137 ATP-dependent transcriptional regulator, ... 317 1e-84 UniRef50_Q5Z0N1 Putative transcriptional regulator n=1 Tax=Nocar... 314 1e-83 UniRef50_C8X3C0 Tetratricopeptide TPR_4 n=1 Tax=Desulfohalobium ... 313 2e-83 UniRef50_C0ZBC0 Putative uncharacterized protein n=1 Tax=Breviba... 313 2e-83 UniRef50_C5BYP8 ATP-dependent transcriptional regulator, MalT-li... 310 1e-82 UniRef50_B0A6U3 Putative uncharacterized protein n=1 Tax=Clostri... 310 1e-82 UniRef50_Q0SA69 Probable ATP-dependent transcriptional regulator... 310 2e-82 UniRef50_A1T5L2 Regulatory protein, LuxR n=2 Tax=Mycobacterium R... 309 4e-82 UniRef50_B8FZ91 Transcriptional regulator domain protein n=8 Tax... 307 1e-81 UniRef50_A8S041 Putative uncharacterized protein n=1 Tax=Clostri... 305 6e-81 UniRef50_B8G4C3 Transcriptional activator domain protein n=2 Tax... 304 9e-81 UniRef50_Q1NQI1 Transcriptional regulatory protein-like:transcri... 303 3e-80 UniRef50_C7H4E9 Transcriptional regulator, LuxR family (Fragment... 303 3e-80 UniRef50_A5V421 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 302 4e-80 UniRef50_C0QDB1 MalT n=1 Tax=Desulfobacterium autotrophicum HRM2... 300 1e-79 UniRef50_C5BYR9 ATP-dependent transcriptional regulator, MalT-li... 298 6e-79 UniRef50_Q3A891 ATP-dependent transcriptional regulator n=1 Tax=... 297 1e-78 UniRef50_Q2SH33 Probable regulatory protein, luxR family n=1 Tax... 296 2e-78 UniRef50_C1TPX1 ATP-dependent transcriptional regulator n=1 Tax=... 296 3e-78 UniRef50_UPI0001C310C7 ATP-dependent transcriptional regulator, ... 292 5e-77 UniRef50_Q143R5 MalT n=1 Tax=Burkholderia xenovorans LB400 RepID... 290 3e-76 UniRef50_A8L327 Transcriptional regulator domain protein n=1 Tax... 286 2e-75 UniRef50_A5V680 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 283 3e-74 UniRef50_A6CKT6 Regulatory protein, LuxR n=1 Tax=Bacillus sp. SG... 278 7e-73 UniRef50_D2PS65 Transcriptional activator domain protein n=1 Tax... 275 5e-72 UniRef50_B8GBN1 Transcriptional activator domain protein n=3 Tax... 274 1e-71 UniRef50_A5UVS9 Transcriptional activator domain n=2 Tax=Roseifl... 271 7e-71 UniRef50_D0WI68 Putative HTH-type transcriptional regulator MalT... 268 6e-70 UniRef50_Q2JEI5 ATP-dependent transcriptional regulator, MalT-li... 261 8e-68 UniRef50_C5C0G8 ATP-dependent transcriptional regulator, MalT-li... 260 2e-67 UniRef50_B2UD70 Transcriptional activator domain n=1 Tax=Ralston... 258 6e-67 UniRef50_A3PV03 ATP-dependent transcriptional regulator-like pro... 256 3e-66 UniRef50_C8XH94 Transcriptional regulator domain protein n=1 Tax... 253 2e-65 UniRef50_A6M0Y9 Regulatory protein, LuxR n=1 Tax=Clostridium bei... 236 3e-60 UniRef50_B8HJC4 Transcriptional activator domain protein n=6 Tax... 234 8e-60 UniRef50_C1RKJ7 ATP-dependent transcriptional regulator n=1 Tax=... 233 2e-59 UniRef50_A9AYH6 Transcriptional activator domain n=1 Tax=Herpeto... 233 3e-59 UniRef50_Q1IZS9 ATP-dependent transcriptional regulator n=1 Tax=... 231 1e-58 UniRef50_Q67R77 Putative transcriptional regulator n=1 Tax=Symbi... 230 2e-58 UniRef50_D1BFN8 ATP-dependent transcriptional regulator n=1 Tax=... 230 2e-58 UniRef50_C1CW78 Putative Tetratricopeptide repeat (TPR)-containi... 229 4e-58 UniRef50_Q6ACL7 Transcriptional regulator, LuxR family n=1 Tax=L... 227 1e-57 UniRef50_C3JUK9 LuxR-family transcriptional regulator n=2 Tax=Rh... 226 4e-57 UniRef50_D1BJM9 ATP-dependent transcriptional regulator n=1 Tax=... 223 2e-56 UniRef50_UPI0001C32364 transcriptional activator domain protein ... 217 1e-54 UniRef50_Q1N3B3 Regulatory protein, LuxR n=1 Tax=Bermanella mari... 206 4e-51 UniRef50_Q0K4A1 Transposase or inactivated derivative n=1 Tax=Ra... 204 1e-50 UniRef50_UPI0001914156 transcriptional regulator MalT n=4 Tax=Sa... 200 3e-49 UniRef50_C0GFG4 ATP-dependent transcriptional regulator, MalT-li... 189 3e-46 UniRef50_Q0SJC2 Possible transcriptional regulator n=1 Tax=Rhodo... 182 8e-44 UniRef50_D2S488 Transcriptional activator domain protein n=2 Tax... 179 6e-43 UniRef50_A3DFE3 ATP-dependent transcriptional regulator-like pro... 177 2e-42 UniRef50_A7VGK0 Putative uncharacterized protein n=1 Tax=Clostri... 175 4e-42 UniRef50_Q6ACS4 Transcriptional regulator, LuxR family n=1 Tax=L... 169 6e-40 UniRef50_Q11ZX7 ATP-dependent transcriptional regulator, MalT-li... 162 7e-38 UniRef50_C4DRX9 Transcriptional regulator, luxR family n=1 Tax=S... 158 1e-36 UniRef50_UPI0001B574B6 protein kinase n=1 Tax=Streptomyces sp. A... 154 2e-35 UniRef50_Q5NWK2 Putative uncharacterized protein n=1 Tax=Aromato... 153 3e-35 UniRef50_C8XHS3 Transcriptional regulator, LuxR family n=1 Tax=N... 144 2e-32 UniRef50_Q5QES7 AmphRI n=2 Tax=Streptomyces nodosus RepID=Q5QES7... 138 1e-30 Sequences not found previously or not previously below threshold: UniRef50_Q0AY14 ATP-dependent transcriptional regulator-like pro... 267 1e-69 UniRef50_A1TY93 Regulatory protein, LuxR n=4 Tax=Gammaproteobact... 266 3e-69 UniRef50_A3UHL3 Transcriptional regulator, LuxR family protein n... 264 1e-68 UniRef50_A5V4I4 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 254 2e-65 UniRef50_A6NRJ4 Putative uncharacterized protein n=1 Tax=Bactero... 241 8e-62 UniRef50_C6LGQ2 Transcriptional regulator, LuxR family n=1 Tax=B... 224 1e-56 UniRef50_D1VQY9 ATP-dependent transcriptional regulator protein-... 217 1e-54 UniRef50_B8HI06 ATP-dependent transcriptional regulator, MalT-li... 212 6e-53 UniRef50_A7VDU4 Putative uncharacterized protein n=2 Tax=Clostri... 208 6e-52 UniRef50_Q5Z0R6 Putative uncharacterized protein n=1 Tax=Nocardi... 191 1e-46 UniRef50_C3JEA2 Transcriptional regulator, LuxR family protein n... 190 2e-46 UniRef50_B4RG06 Transcriptional regulator, AraC type n=1 Tax=Phe... 181 1e-43 UniRef50_C1XPW9 ATP-dependent transcriptional regulator n=2 Tax=... 179 6e-43 UniRef50_C1RJL1 ATP-dependent transcriptional regulator n=1 Tax=... 173 3e-41 UniRef50_UPI0001AF081C putative LuxR family transcriptional regu... 164 1e-38 UniRef50_A9BF82 TPR repeat-containing protein n=1 Tax=Petrotoga ... 161 1e-37 UniRef50_C8XB03 Transcriptional regulator, LuxR family n=3 Tax=A... 158 1e-36 UniRef50_C7QI16 Transcriptional regulator, LuxR family n=1 Tax=C... 157 1e-36 UniRef50_D1BBT2 ATP-dependent transcriptional regulator n=1 Tax=... 156 3e-36 UniRef50_D1A6G3 Transcriptional regulator, LuxR family n=1 Tax=T... 155 6e-36 UniRef50_D2PVL9 Transcriptional regulator, LuxR family n=1 Tax=K... 154 1e-35 UniRef50_C1RNQ7 ATP-dependent transcriptional regulator n=1 Tax=... 154 1e-35 UniRef50_C8XGA7 Transcriptional regulator, LuxR family n=1 Tax=N... 154 2e-35 UniRef50_D1C1B5 Transcriptional regulator, LuxR family n=1 Tax=S... 147 1e-33 UniRef50_C8SW08 Transcriptional regulator, LuxR family n=1 Tax=M... 147 2e-33 UniRef50_A4FHX0 Transcriptional regulator, LuxR family n=8 Tax=A... 145 7e-33 UniRef50_A1SPZ4 Regulatory protein, LuxR n=1 Tax=Nocardioides sp... 144 1e-32 UniRef50_C1B102 Putative LuxR family transcriptional regulator n... 144 2e-32 UniRef50_C4RNL2 LuxR-family transcriptional regulator n=1 Tax=Mi... 143 4e-32 UniRef50_A0QF77 Tetratricopeptide repeat family protein n=9 Tax=... 142 6e-32 UniRef50_A1TGW8 Regulatory protein, LuxR n=1 Tax=Mycobacterium v... 140 2e-31 UniRef50_D2SB90 Transcriptional regulator, LuxR family n=1 Tax=G... 138 8e-31 UniRef50_C7QKM8 Transcriptional regulator, LuxR family n=2 Tax=c... 138 1e-30 UniRef50_A4FEF8 Large transcriptional regulator n=1 Tax=Saccharo... 137 2e-30 UniRef50_C5C1K1 Transcriptional regulator, LuxR family n=1 Tax=B... 137 2e-30 UniRef50_B7A6Z2 TPR repeat-containing protein n=4 Tax=Thermus Re... 137 2e-30 UniRef50_A8LZB2 Transcriptional regulator, LuxR family n=1 Tax=S... 136 3e-30 >UniRef50_A8GKU0 HTH-type transcriptional regulator malT n=171 Tax=Bacteria RepID=MALT_SERP5 Length = 904 Score = 928 bits (2398), Expect = 0.0, Method: Composition-based stats. Identities = 685/903 (75%), Positives = 796/903 (88%), Gaps = 3/903 (0%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 MLIPSKLSRPVRL +TV+R+RLLAKL+ N+RL L+ PAGYGKTTL++QWAAGK+D+G Sbjct: 1 MLIPSKLSRPVRLQNTVIRDRLLAKLASTANYRLTLVNCPAGYGKTTLVAQWAAGKSDLG 60 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 WYSLDE DNQ ERFASYLIAA+Q A+ GHC E ++QK QYASL++LFAQLFIEL++WH Sbjct: 61 WYSLDESDNQPERFASYLIAALQLASGGHCVKSEALSQKHQYASLSALFAQLFIELSDWH 120 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 PLYLVIDDYHLITN VIHE+MRFF+RHQPENLTL++LSR LP LGIANLRVRDQLLE+G Sbjct: 121 QPLYLVIDDYHLITNDVIHEAMRFFLRHQPENLTLILLSRTLPPLGIANLRVRDQLLEMG 180 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 +QQLAFTHQEAKQFFDCRL SP+E+ +SSR+CD+V GWATALQLIALSARQ+ SA +SA Sbjct: 181 TQQLAFTHQEAKQFFDCRLVSPMESQDSSRLCDEVEGWATALQLIALSARQSNSSAQQSA 240 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 +RLAG+NASHLSDYLVDEVLD+VD R FLL+ ++LRSMNDALI R+TGE+NGQ RLEE Sbjct: 241 KRLAGLNASHLSDYLVDEVLDHVDAEARAFLLRCSVLRSMNDALIVRLTGEDNGQQRLEE 300 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +ERQGLF+ RMDD+GEWFC+HPLF FLRQRCQWELA ELP +HRAAAE W+A G+P+EA Sbjct: 301 LERQGLFIHRMDDSGEWFCFHPLFATFLRQRCQWELALELPGLHRAAAEGWLALGYPAEA 360 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 IHHALAA D MLRDILL HAWSLF+HSEL+LLEE L ALP++ L++NP+L LLQAWL Q Sbjct: 361 IHHALAASDVSMLRDILLQHAWSLFHHSELALLEECLNALPYERLIQNPKLALLQAWLAQ 420 Query: 421 SQHRYGEVNTLLARAEHEIKDIR---EDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 SQHRY EVNTLL RAE ++D + + T+ AEF+ALRAQVAIN G P+EAERLA AL+ Sbjct: 421 SQHRYSEVNTLLERAEQAMRDQKIEVDRTLEAEFDALRAQVAINAGKPEEAERLATEALK 480 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 LP +YSRIVATSV GEV HCKGEL R+L +MQQTEQMAR+H +HYALW+L+QQSEI Sbjct: 481 FLPLSSYYSRIVATSVTGEVHHCKGELARALPMMQQTEQMARRHQAYHYALWALLQQSEI 540 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 L AQGFLQ A+ETQ+KAF+L+ EQHLEQLPMHEFL+RIR+Q+LW+W+RLDEAE +AR G+ Sbjct: 541 LIAQGFLQAAFETQDKAFELVREQHLEQLPMHEFLLRIRSQILWSWSRLDEAEDAAREGL 600 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 ++L++YQPQQQLQC+AML +CSLARGDLDNA + + R E LL +YH DW++NA+K RV Sbjct: 601 KILANYQPQQQLQCIAMLAKCSLARGDLDNANAHMQRCEVLLHGTQYHRDWLTNADKPRV 660 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 I+WQMTGD AAA WLR T KP A+NHF+QGQWRNIAR QI+LG++E AE+VL+ELNEN Sbjct: 661 IHWQMTGDTTAAAQWLRQTEKPGMADNHFMQGQWRNIARVQIMLGQYEEAEVVLDELNEN 720 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 AR LRL+SDLNRNLLL NQLYWQ RKSDAQ+VL++AL LA+RTGFISHFVIEGEAMAQQ Sbjct: 721 ARRLRLVSDLNRNLLLSNQLYWQMERKSDAQKVLMEALSLASRTGFISHFVIEGEAMAQQ 780 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLT 837 LRQLIQLNTLPELE HRAQRILR+INQHHRHKFAHFDENFV++LL HP+VPELIRTSPLT Sbjct: 781 LRQLIQLNTLPELENHRAQRILRDINQHHRHKFAHFDENFVDKLLTHPQVPELIRTSPLT 840 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMM 897 QREWQVLGLIYSGYSN+QIAGEL VAATTIKTHIRNLYQKLGVAHRQ+AVQ AQQLLKMM Sbjct: 841 QREWQVLGLIYSGYSNDQIAGELAVAATTIKTHIRNLYQKLGVAHRQEAVQQAQQLLKMM 900 Query: 898 GYG 900 GYG Sbjct: 901 GYG 903 >UniRef50_A7N5N6 HTH-type transcriptional regulator malT n=66 Tax=Gammaproteobacteria RepID=MALT_VIBHB Length = 902 Score = 835 bits (2158), Expect = 0.0, Method: Composition-based stats. Identities = 421/902 (46%), Positives = 611/902 (67%), Gaps = 3/902 (0%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 M IPSKL+RP RL + +VR R+L L A ++L L SPAGYGKTT+ +QW + K ++G Sbjct: 1 MWIPSKLTRPGRLHNAIVRPRVLDLLQQAPYYKLVLFRSPAGYGKTTMAAQWLSDKPNVG 60 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 WYS+D+ DN RF +YL+ A+ +ATN +C+ + +A+KRQ++SL SLF+++F E+A++ Sbjct: 61 WYSIDDSDNDGFRFVNYLLQALNKATNYNCSNAQKLAEKRQFSSLRSLFSEVFAEMADFQ 120 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 Y+V+DDYHLITN IHESMRFF++H P+NLT+VV SR P LG ANLRVRD ++EIG Sbjct: 121 HECYVVLDDYHLITNDEIHESMRFFLKHMPDNLTVVVTSRAAPPLGTANLRVRDLMIEIG 180 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++ LAF +E +FF+ R++ I+ ++ + V GW +ALQLIAL A+ + ++ Sbjct: 181 NEMLAFDTEETTRFFNQRIADGIDEDMANNLRTYVEGWPSALQLIALQAQHQNRTLAQTV 240 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 ++ N +HL DYLV+EV D +D TRHFL++ ++L ND L+ +T E+ +E Sbjct: 241 ESVSQFNHAHLWDYLVEEVFDLLDQETRHFLMQVSVLDHFNDELVFALTQREDALGMIES 300 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 + R GLF+ ++ WF +H LFG FL + + ++HR AA +W+ Q P +A Sbjct: 301 LNRFGLFIYPLEGEQNWFRFHNLFGEFLSHERLARIPQQEKDLHRNAAVAWLKQKAPHQA 360 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 IHHA + D ++ +IL W +FN EL+ LE ++ L D L +P+L +L+AWL Q Sbjct: 361 IHHAQKSNDTDLIVEILNEFGWKMFNQGELTTLESAINQLDKDLLFSHPKLSMLRAWLAQ 420 Query: 421 SQHRYGEVNTLLARAEHEIKDIR---EDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 SQHRY +V LLA AE E K + + NAL AQVAIN P+ A LA+LAL Sbjct: 421 SQHRYNQVGKLLAEAEEEHKKRNIEIDSGYQGQANALLAQVAINSNQPEHALELAELALS 480 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 +L P + SRIVATSV+GEV H G+L R+L +MQQTE++ARQ+ V+H ALW+++QQSEI Sbjct: 481 QLDPTVYRSRIVATSVVGEVNHVLGKLDRALPMMQQTEKLARQYQVYHQALWAILQQSEI 540 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 + AQG++Q A+E Q+ F+LI EQ L+ +P+HEFL+RIRAQ+LW W RLDEAE A G+ Sbjct: 541 MIAQGYVQAAFELQDSGFRLIEEQQLQHVPLHEFLLRIRAQVLWCWNRLDEAEECAYKGL 600 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 ++L ++ P + L +ML + ++ RG+LD A + +++L+ YH DW +NA+ + Sbjct: 601 QILENHSPSKHLHSYSMLARIAIGRGELDKAGKFIEHIQHLMKQSTYHVDWTANASLSLI 660 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 ++WQ G+ A WL +PE A NHF Q QWRNIARA I LG+++ A L+ L Sbjct: 661 LFWQARGNTEAIQEWLNTAVRPESACNHFQQLQWRNIARAHINLGQYDEAREALDFLQSE 720 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 A L++D NRNL++ L + + A+ +L +AL + N+TG + +F+ +G + Sbjct: 721 AHRTNLVTDTNRNLVVEAILAARQKDEEQAKTLLKEALVMTNQTGMVGNFLTDGATIGGL 780 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLT 837 L +L + L +LE+HRAQ+++++I+ + R + HFDE+F+E+L+NHP VPEL+RTSPLT Sbjct: 781 LEKLSLRHELGDLERHRAQQLMKDISSNQRSRSIHFDEDFIEKLVNHPNVPELVRTSPLT 840 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMM 897 QREWQVLGLIYSG+SNEQIA EL+VA TTIKTHIRNLYQKL +A+R++A+ A+ LL++M Sbjct: 841 QREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTAENLLQLM 900 Query: 898 GY 899 GY Sbjct: 901 GY 902 >UniRef50_Q2SPN4 Maltose regulon positive regulatory protein MalT n=3 Tax=Gammaproteobacteria RepID=Q2SPN4_HAHCH Length = 918 Score = 721 bits (1862), Expect = 0.0, Method: Composition-based stats. Identities = 343/904 (37%), Positives = 518/904 (57%), Gaps = 12/904 (1%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIG 60 LI +K+ P R H + RE+ L + L L+ +PAGYGKTT+I A + Sbjct: 12 LIKAKILPPPRPAHLLEREKFDDLLHEIDPVNLILVQAPAGYGKTTMIDDRLGALGANAA 71 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W+ LD DN E+FA Y+ ++ +AT G C ++ Y +L + L EL Sbjct: 72 WFRLDAQDNLSEQFAFYVAHSLNEATRGACPETLRTLNQQGYPTLQTFLTDLLSELPLEG 131 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 PL+LV+DDYHLI+NP IH + F +RH P +TLV+LSR P +G+A LR++ ++LEI Sbjct: 132 DPLHLVLDDYHLISNPEIHSGVMFLLRHLPPYITLVLLSRTTPPIGVAQLRMQGRMLEIT 191 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++ L+F+ EA+ +F+ RL + R V GW +ALQL+A +A Sbjct: 192 AKDLSFSADEAQVYFEQRLRFEVSRESVERANRRVEGWVSALQLLAATASTGVEFNEYVE 251 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + +G + ++ DY + ++D R FLL++++L N ++ R+ +++GQ L Sbjct: 252 QLHSGNH--YIFDYFDELTRTSIDNEQRLFLLRTSVLERFNALMVMRLAQQQDGQFLLNS 309 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 + GLF+ +D +G WF YHPLF +LR L E ++H+ A+++W GF +A Sbjct: 310 LLNLGLFIVPLDSSGLWFRYHPLFAAYLRHMQVCVLPDETAQLHQRASDAWREMGFFEDA 369 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 HA+ A D ++DILL+ F + +LL+ AL + + ++P L LL+AW+ Q Sbjct: 370 ARHAVLAKDQQRIKDILLSCGRDFFTEGQFNLLQRCFDALNKEVIADHPILTLLRAWVAQ 429 Query: 421 SQHRYGEVNTLLARAEHEIK----DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 Q+++ EV + L AE +K + + ++ EFNA+RAQVA+N G+ + A+ AK AL Sbjct: 430 GQYQWSEVESWLRAAEQHLKTHCSEEEWEAINGEFNAVRAQVAMNVGDAERAQTFAKSAL 489 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 P SR A+SV+GE L +G L ++ MQ TEQ+A +W+L QQSE Sbjct: 490 AHDPVYLPTSRTAASSVIGESLFVQGHLKEAITRMQDTEQLALAEHAHQNVIWALCQQSE 549 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 I AQG+LQ A+ QEKA Q + LE+LP+ EFL RIR+Q++W W L+ AE A G Sbjct: 550 ISVAQGYLQKAYNIQEKALQYAEDHSLERLPILEFLYRIRSQIMWEWHHLESAERCALKG 609 Query: 597 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 IE+L S + +Q ML + + ARG + ++ +L +G+YH DW +NA+ Sbjct: 610 IEILESQGERWFIQSYVMLAKIAQARGRQSLCADYVQKIHKMLASGEYHIDWTANAHAAM 669 Query: 657 VIYWQMTGDKAAAANWLRHTAK--PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 714 + YW DK + WL + PE A NHF Q RN ARA + LG+F+ A +LE + Sbjct: 670 LSYWDAVRDKESIQRWLTAAPEPTPEQATNHFTQCNIRNWARAYVSLGDFDKALPLLEGI 729 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 A L +D+NRN + L+QLYW ++ DA R + ALKLA+ TG + F+ G+ + Sbjct: 730 QSMAEQFGLKTDINRNHIHLSQLYWLNEQREDALRHMAIALKLASTTGAVGSFLRIGKVL 789 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFA---HFDENFVERLLNHPEVPELI 831 L+ LI L E+E+ RA+R+++ Q A DE ++ +++ P+VPELI Sbjct: 790 INILKALISEEQLDEMEKQRAERLIQLAQQQRDFSRAIRISLDEAIIQDIIDRPDVPELI 849 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 RTSPLT+REWQVL LI++G SN+QIA ++VA TT+KTHIR+LYQK + HR +A+ A+ Sbjct: 850 RTSPLTRREWQVLSLIHAGLSNDQIAEHMKVAPTTVKTHIRSLYQKQNITHRSEAINLAR 909 Query: 892 QLLK 895 LL Sbjct: 910 DLLS 913 >UniRef50_A4VQ60 ATP-dependent transcriptional regulator n=4 Tax=Gammaproteobacteria RepID=A4VQ60_PSEU5 Length = 932 Score = 687 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 326/903 (36%), Positives = 491/903 (54%), Gaps = 12/903 (1%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 LIP+KL+ P+ + R RL L RLA++ + +G+GKTTL +QWA + Sbjct: 28 LIPTKLAIPMLPPGLLERPRLDEWLQRLGQVRLAVLHAASGFGKTTLAAQWARAFDGRVA 87 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W L DN +F YL A+ + C + +A++ Q SL +LF QL EL H Sbjct: 88 WLQLHASDNLALQFGRYLTQALDPQLDAGCPLAVALAEQGQ-VSLDALFTQLLAELPGEH 146 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 + LV+D++ ++ + + +RFF+RH P +TL+V SR LP LG+A LRV+ QLL + Sbjct: 147 EAILLVLDEFEVLHDRELIAGLRFFLRHMPSWMTLLVCSRRLPGLGVAELRVKHQLLLLD 206 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++QLAF E + + + I + R+ + GW ALQL + T Sbjct: 207 ARQLAFEDDEVQALLELGVPVSINREQVERLNRRIGGWPCALQLALQEVQ--TSRGMDLF 264 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + + DY+ ++VL+ + R FL + +L + AL +T +G+ LE Sbjct: 265 LENLQLGHPDIRDYMREQVLEGLPDDLRGFLEATCLLERFDAALADHLTEACHGREMLER 324 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +ER GLF+Q +D W+ YHPLF FL+ + + ++H AA + +A+G P EA Sbjct: 325 LERGGLFIQPLDSLRRWYSYHPLFAVFLQGELRTHQPQRVNQLHLRAASALLAEGLPEEA 384 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 HA+ AG+ + +IL H + + L LL++ L+ LP + +P L LLQAW+ Q Sbjct: 385 ARHAVQAGEPQQVAEILQRHGRAFYRQGRLGLLQQCLETLPEAVIAGSPLLTLLQAWVSQ 444 Query: 421 SQHRYGEVNTLLARAEHEI----KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 + +++ +V +E + + + EFNA+RAQ+A+N G+ A LA+ AL Sbjct: 445 NSYQFDQVERWFKASELALHGSCSEQDWARIVGEFNAVRAQLAMNQGDEQRAIALAEEAL 504 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 P SR+ A S L E +G L ++ ++ E+ AR+ + H +WSL Q SE Sbjct: 505 TCEPLIMRTSRVAALSGLAEAHFVQGALPQAQKQYEEAERRAREINASHLVVWSLGQLSE 564 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 I AQG LQ A+ QE+A Q I +Q L+ +P+ EF+ R+R Q+L W +LD AE A G Sbjct: 565 IAIAQGHLQKAYTLQERAIQYIEQQRLQAMPIVEFIYRVRGQVLLEWHQLDAAEQCALQG 624 Query: 597 IEVLSSY-QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 I++L P+ +LQ A+L + ARG + +++ +L + +YH DW++NA+ V Sbjct: 625 IQILDELDDPRWRLQSYALLAGVAYARGQQHACADYIGQMQTMLADDRYHIDWLANAHAV 684 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 715 + YW + D+ A WL NHF Q RN ARA + LG+ + A +L +L Sbjct: 685 MLAYWDSSQDRDAIRQWLVSAPPVNGGANHFSQLNARNHARAYLALGQLDSALPILRQLL 744 Query: 716 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 775 NA L+ D NRN +LL QL+W + A L A+ LA+ +G I F+ G+ + Sbjct: 745 ANAECHGLVMDRNRNHILLAQLHWLREERQQALDHLQRAMTLASGSGAIGSFLRVGKPII 804 Query: 776 QQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFA---HFDENFVERLLNHPEVPELIR 832 L+ L+ TL E E RA R+++ Q A DE ++ ++N P+VPELIR Sbjct: 805 GMLKCLLHERTLDEPEVQRATRLIQLAQQQRDFSRAIRITLDEAVIQDIINRPDVPELIR 864 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 SPLT+REWQVL LI++G SNEQIA L VA TTIKTHIR+LYQKL + HR +AVQ A+ Sbjct: 865 RSPLTRREWQVLSLIHAGQSNEQIADHLNVAPTTIKTHIRSLYQKLNITHRSEAVQLARD 924 Query: 893 LLK 895 LL Sbjct: 925 LLS 927 >UniRef50_B8CZU7 Regulatory protein LuxR n=3 Tax=Firmicutes RepID=B8CZU7_HALOH Length = 887 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 226/899 (25%), Positives = 401/899 (44%), Gaps = 46/899 (5%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANN--FRLALITSPAGYGKTTLISQWA-AGKNDI 59 + +KL + RERLL KL+ +L L+++PAGYGK+TLI+ W K Sbjct: 15 LKTKLHPAPLPSGIIHRERLLNKLAEGRKNGTKLILVSAPAGYGKSTLITDWLVRDKIKH 74 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W S+++ DN+ F YL++++Q+ + G ++ Q + L + L EL Sbjct: 75 AWLSIEDEDNKLVPFFEYLLSSLQEISEGFGKTIRSILASPQLPPINVLISLLIQELEAL 134 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 +PL +V+DDYH I+N I++ + + + H P + LV++SR P + + LR +QL EI Sbjct: 135 PAPLTIVLDDYHFISNRQINQGISYLLEHLPLDFKLVIISRQDPPIPLGRLRANNQLTEI 194 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L F QEA FF+ L + E S + GW + LQL LS +++ K Sbjct: 195 RMKDLKFNKQEASSFFEENLQIALNEEEVSLLNSRTEGWVSGLQLAGLSLKESAEGERKV 254 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 + + DYL +EVL + FL K+++L ND++ R+T + N + + Sbjct: 255 FIDNFSGSNRFVIDYLFEEVLVRQKPEVKDFLCKTSVLNKFNDSICNRLTEDSNSKSVIT 314 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 E+++ F+ +D W+ YH LF +FL E E +H+ AA + +G+ E Sbjct: 315 ELDKGNHFIIPLDVNKSWYRYHHLFRDFLTSELSLE---EKKGLHKKAASWYDERGYLHE 371 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 AI+H+ A D +L ++ LFN E+ L E L+ LP L +N +L++ + W + Sbjct: 372 AIYHSREADDLDLLERLITKLTIDLFNKGEVETLLEYLEYLPEKRLKKNSKLLIFKTWCL 431 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL 479 + E+ L + + D+ + F AL + N +A+ A++ + Sbjct: 432 FLTGKGREIAGYLQLIKDREDINKNDSYYGLFLALIVLFDHQEKN----LEMAEKAVDMI 487 Query: 480 PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 539 + RI A LG+V G+ + ++ ++ + ++ D + +LI + L Sbjct: 488 DNKEHFFRIAALLSLGQVQASMGKYSEAVITFKEAMNIGKKTDFHFGTITALINLAVNLN 547 Query: 540 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 599 G + A E + + + P+ + L + +L A + + GI Sbjct: 548 WLGQRKEAVLICENSLYEYTDSRGKIYPLANLIYIPLGILKYENNQLKSAYSYLQKGITF 607 Query: 600 LSSYQPQQQLQCLAM-LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 658 + + + + Q A G + A + + NL G I N + Sbjct: 608 CQEWSFVRIMGLGEWYMGQTLFALGKKEEAIEFVEEIINL-GKQLGLKGLIFFMNCLEAD 666 Query: 659 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA 718 + +K A W K + G + ++LL + + +EE++ Sbjct: 667 LYVKADNKEKAFLWAEEIKKFP-DQMITISGIFMGFTYTRVLLSQRK-----IEEVDSIL 720 Query: 719 RSLRLMSDLNRNL----LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 + + RNL LL ++ + G+K+ A + L++A+KLA G+ F+ EGE + Sbjct: 721 SRINNLGVKGRNLITVRLLQTKISYLEGKKNKALKCLVEAVKLARPEGYTRAFLDEGEVI 780 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 + L ++ ++ + I + K + F+ Sbjct: 781 YKLLSEVKDVS----------PAFITGILEAFDFKKSTFNN--------------QNLIE 816 Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 PL++RE ++LGLI +G SN++IA +L + T K HI N+Y KLGV R A++ A QL Sbjct: 817 PLSERELEILGLIVNGLSNKEIAKKLYITVGTTKWHISNIYGKLGVNKRAQAIKKALQL 875 >UniRef50_C0Z8V4 Probable transcriptional regulator n=2 Tax=Bacillales RepID=C0Z8V4_BREBN Length = 873 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 244/913 (26%), Positives = 400/913 (43%), Gaps = 62/913 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIG 60 ++ +KL P TV R RL+ +L+ N +L +I++PAG GKTTL+S+W A G Sbjct: 5 IVTTKLYMPPPRLKTVTRHRLIEQLNEGLNRKLTVISAPAGSGKTTLVSEWLASGDRPFA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W S+DEGDN F +YL A+Q + + Q S+ + + L E+ Sbjct: 65 WISMDEGDNDPAHFFTYLFTALQNIGPNIGSGIYPLFHSPQPLSIELMISTLLHEIIAIS 124 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 +P LV DDYH++ + +++ F + P + LV+ +R P+L +A LRVR+QL E+ Sbjct: 125 NPFVLVFDDYHVLKTGPLDDAISFLLERMPRQMHLVIATREEPRLPLARLRVRNQLNEVR 184 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 L FT+ EA +F + + + + + GW LQL ALS ++ Sbjct: 185 VSDLRFTYSEAAEFLEKVMEVELSPENIALLEARTEGWIAGLQLAALSIKEQIDV-EAFL 243 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN-----GQ 295 +G + + DYLV+EVL +T+ FLL ++IL ++ L V + + GQ Sbjct: 244 PSFSGSHP-FILDYLVEEVLTQQSASTQAFLLHTSILDRLSGPLCDAVFSQSDMCLGSGQ 302 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELA-------AELPEIHRAAA 348 LE +ER LF+ +D W+ YH LF + LRQR + ++ L E+H A+ Sbjct: 303 ETLEFLERANLFIVPLDSERRWYRYHHLFADLLRQRLRQRVSSITGEGERILAELHTRAS 362 Query: 349 ESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLEN 408 + GF EA HHA+AA D ++ L + + L++LP + L Sbjct: 363 IWYEDNGFEMEAFHHAVAANDLSRAARLVEGERMPLLFRGGVVPVLNWLESLPREELDVR 422 Query: 409 PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIRED----TMHAEFNALRAQVAINDGN 464 P L ++ A + + V L AE ++ + +D A+RA +A++ Sbjct: 423 PALWVMYASALLMTGQITGVEPKLLAAEKAMQGMGQDAGARDTLGHIAAIRATLAVSMHQ 482 Query: 465 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 524 +E AK AL L P R T LG H +G T + Q+ ++++ Sbjct: 483 AEEIMAEAKRALAYLHPDNLPVRTATTWSLGYAYHLQGNRTAATKAYQEALSISKKIGHV 542 Query: 525 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 584 + + + +++ A L A ET + +L LP A++ + W Sbjct: 543 VITMMATLGLAKLQEADNQLHMAAETYQHVQKLA---GSPPLPAACEAHLGLARIFYEWN 599 Query: 585 RLDEAEASARSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK 643 L AE + I++ + + + L + LA+GD+ A + L E + Sbjct: 600 DLHTAELHGQQSIQLARQLEQTDRVVAAQVFLARLKLAQGDVSGAATMLANAEYVARKQG 659 Query: 644 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 703 + A +I Q AAA LRH AR + G+ Sbjct: 660 FVMQMPPIAEVQVLILLQQDNLTAAARLALRHDLP-------------ILQARVLLAQGD 706 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 A VLE L A + ++ + + +LL G ++ A +++ D L +A GF Sbjct: 707 TSAALAVLEPLLVQAEAKQIEDERLKIMLLQAVALQVQGDQAKAAQIMKDVLVIAEPGGF 766 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 I FV EG M ++++ T+ + +++L E HH Sbjct: 767 IRTFVDEGSQM----KRILHDATVHRMLPRYIEKLLAEFEPHHADSL------------- 809 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 PL++RE ++L LI G SN IA +L +A +T+K H RN++ KL V R Sbjct: 810 ---------IEPLSERELEILQLIEKGLSNRDIAQQLFLALSTVKGHNRNVFDKLQVQRR 860 Query: 884 QDAVQHAQQLLKM 896 +AV A+QL + Sbjct: 861 TEAVARARQLGLL 873 >UniRef50_B0C3T1 Transcriptional regulator, LuxR family with TPR repeats n=4 Tax=Bacteria RepID=B0C3T1_ACAM1 Length = 924 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 242/928 (26%), Positives = 395/928 (42%), Gaps = 56/928 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND--I 59 L+ +KL RP V R RLL ++ +L L+++PAG+GKTTL+++W A D + Sbjct: 14 LLETKLYRPKWRPGLVSRPRLLERIHK--ERKLTLVSAPAGFGKTTLLAEWVAAVPDQLV 71 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLD+GDN F +YLI A+Q+ +G ++ Q Q + S+ A L E+ Sbjct: 72 TWVSLDQGDNDSAFFWAYLITALQKINSGLGERSLSLLQSPQPPPIESVLAILINEINGV 131 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L L++DD+H+I N + E++ F + H P L L++ SR P L +A LR R +L E+ Sbjct: 132 EDNLTLILDDFHVIENRGVQEAITFLLDHLPFQLHLIIASRTDPPLPLARLRGRGELTEL 191 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L FT EA F + + I A+ + + GW LQL ALS + Sbjct: 192 RAADLRFTSNEAAAFLNRMMGLDISPADIAALETRTEGWVAGLQLAALSMQGREDIPEFI 251 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A + ++ DYL++EVL R FLL++A+L ++ L VT ++ Q L Sbjct: 252 AAF--SGDDRYIVDYLLEEVLQRQCDRVRTFLLQTAMLERLSGPLCDAVTNQQGSQTMLA 309 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 ++ER LF+ +D+ +W+ YH LF + L+ E L +HR A+E + Sbjct: 310 DLERDNLFVVPLDNKRQWYRYHHLFADVLQAHAIAEQLEHLSILHRRASEWYEQNNQLFH 369 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 AIHHALAA D ++ ++ + S + +K+LP P L ++ A ++ Sbjct: 370 AIHHALAAKDFERAASLIERIWPTMRQRQQESTVFGWMKSLPNSVFHNRPVLSVVYALVL 429 Query: 420 QSQHRYGEVNTLLARAEH--------------EIKDIREDTMHAEFNALRAQVAINDGNP 465 + + L AE + D++ ++ A RA A G+ Sbjct: 430 LNDGQLDTAEARLQNAERWLDKDTESPAVERVVVDDLQFRSLPASIANARAYRAQALGDV 489 Query: 466 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 525 A+ AL LP Y R S+LG G L + + + ++ Sbjct: 490 SSTITYAQQALALLPEDAAYERGTTASLLGLAYWASGNLEAAHLSFAKGLAIFQKIGGVQ 549 Query: 526 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 585 A+ + + I QG LQ A T E+A QL EQ L+ ++L + Sbjct: 550 IAIGGTLILAHIRRGQGRLQEAIRTCEQALQLATEQGEPGRRGTAELLMALSELHYEQGD 609 Query: 586 LDEAEASARSGI---EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 642 L+ A G E ++ L C + + GDL+ A LN E Sbjct: 610 LETASQLLLQGEELREQATTLPGADHLWC-VVQAHLKESLGDLEEAFKLLNEAER--SYH 666 Query: 643 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 702 + + ++V W G + A +W + +L+ ++ +I ++L+ Sbjct: 667 RIPIPDVRPVAALKVRMWVRQGQLSEALSWANERQLSVEDDLSYLK-EYEHITLTRVLIA 725 Query: 703 EFE-----------------PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 745 + +L L + A++ + L+ Y G Sbjct: 726 RYRSDGQRSAQGHCRDNVIHQVLDLLARLLQVAQAAGRNGSVLDILVTQGLAYEVLGDVE 785 Query: 746 DAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQH 805 A L AL LA G++ F EG +MA+ LR++ P R L Q Sbjct: 786 RAISPLKCALTLAEPEGYVRIFAQEGTSMAELLREIAARGITPGYT-GRLLTALETWGQK 844 Query: 806 HRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAAT 865 + + L+ PL+QRE VL L+ + S +IA EL VA + Sbjct: 845 REDQAVSPISASAQSLV-----------EPLSQRELDVLRLLRTDLSGPEIARELVVALS 893 Query: 866 TIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 T++TH +++Y KL V +R+ A++ A L Sbjct: 894 TVRTHTKSIYSKLNVNNRRAAIKRATAL 921 >UniRef50_Q2SEA9 ATP-dependent transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SEA9_HAHCH Length = 907 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 291/907 (32%), Positives = 456/907 (50%), Gaps = 22/907 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIG 60 LIPSK S P H + R RL A L A + L ++ +PAG+GKTTL++ W+ + I Sbjct: 12 LIPSKFSPPQTGSHVLSRPRLEAALIDAASKPLCIVRAPAGFGKTTLMTHWSRRQPGRIA 71 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LDE DN F YL+A + + + L L +L EL+ Sbjct: 72 WINLDELDNDPILFGRYLVATLSRQAPELQGPLSRVEGALSEYDLIWLTGKLCNELSTLD 131 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 L LV+DDYH + N IH ++RF I+HQP L L +L+R P LG+AN RVR L EIG Sbjct: 132 QQLVLVLDDYHHVHNEHIHAALRFLIQHQPPALRLFILTRAEPPLGLANWRVRGMLHEIG 191 Query: 181 SQQLAFTHQEAKQFFDCRLSSPI-EAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + +L FT +EA+QF + + + + GWA LQ+IALSA S + Sbjct: 192 TDELGFTLEEAQQFLHEKNGLRVEDPQALQEALQRLKGWAAGLQIIALSA-PAKDSLNDY 250 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 RR G + H+ D+L +EVL + FLL++++L N L VT + L+ Sbjct: 251 LRRFNGAHT-HVLDFLAEEVLSKQPPERQAFLLQTSVLERFNSELAQAVTEHKESFGMLQ 309 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQGFPS 358 ++E+ G+F+ +D+ W+ YHP F FLR + Q + ++ + ++HR A E W+ + + Sbjct: 310 DLEKGGMFIAPLDEYRTWYSYHPFFAEFLRHQLQLQATSQTIIDLHRRAYEWWLQKAQTA 369 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 EA+ H L GD +++ + L H WSLF LSL+E+ L LP + + +L LL+AW+ Sbjct: 370 EALTHLLQIGDPMLIAEALSLHGWSLFEQGRLSLIEQCLDVLPETVIANDNRLALLRAWV 429 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDT----MHAEFNALRAQVAINDGNPDEAERLAKL 474 +Q + L +AE + D +E+ + AE +AL+AQ+ + + A A+ Sbjct: 430 CLTQADPDSLEEALNQAEQRLPDQQEEAQWRRVSAEISALKAQLYATVEDIEAAHNHARQ 489 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 A + + +A SVLGE C+GEL ++ Q E AR D H LW+L QQ Sbjct: 490 A-LAISSSASNAAAIALSVLGETHVCRGELDQARDAFMQAEASARAADSMHGLLWTLGQQ 548 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 +++L QG L + Q QL E HL Q P+ EF+ R RA LL W + EA Sbjct: 549 ADVLRHQGDLVGCHQQQTFILQLAREHHLAQTPVMEFIHRQRADLLIEWLQCHEAAQHCD 608 Query: 595 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 +G+ ++ +P + A+ +L +G+ A + L + L+ + HSDW + + Sbjct: 609 AGLRIVEHLEPHCAVPLNALKASIALQQGEAGAADTYLRKNTLLMREYRCHSDWRALSAS 668 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 714 +++ YW+ + +A WL P A +HF Q + RN+A A + L A +L L Sbjct: 669 IQLRYWRQQRNLSAIHEWLSAEPPPSPAPSHFQQRRARNLAFALLSLDRSREAAQILLPL 728 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 +R L N +L + G + +A LL AL+LA ++ + E + Sbjct: 729 TAQSRQFGLRLSEMENQILTTWACLRLGNEKEASDALLRALQLAEPMRAVASLLQAPEWL 788 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 L+ + L E+ QR+L + HR + + +PE R Sbjct: 789 LDFYAFLLDDSRLSSAERRHLQRVLELSKRQHRPQKKTRN------------MPEQARAL 836 Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLL 894 LT +EW+VL LI G SNE+IA L VA +T+++HI+++YQKLG++ R +A + + L Sbjct: 837 ALTPKEWEVLRLIGEGSSNERIAERLYVAPSTVRSHIKHVYQKLGISSRVEARRVSLDLS 896 Query: 895 KMMGYGV 901 + G+ Sbjct: 897 QGRVAGL 903 >UniRef50_C4X459 Trans-acting regulatory protein of aco operon n=4 Tax=Klebsiella RepID=C4X459_KLEPN Length = 921 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 224/908 (24%), Positives = 388/908 (42%), Gaps = 33/908 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 LI +K P + R RLL LS RL ++ + AG+GKTTL++QW A Sbjct: 27 LILTKFVPPRSSIQLLERPRLLQLLSPVQQCRLGVVCAGAGFGKTTLLAQWHQQMVAQGE 86 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 I W SLDE D+ +F YL+ A++ A ++++ +S L A L +L Sbjct: 87 RIAWLSLDEDDDDVWQFIPYLLQALRPLYADWDADFWRDMEEQKLSSSEQLLAGLINQLH 146 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 +YL+IDD+H+I + ++E++ + I+H P L L++ SR P L ++ L+ +DQL+ Sbjct: 147 YCPHDVYLIIDDFHVINDRGVYEALGYLIKHAPAALHLIIGSRFHPNLALSQLQAQDQLV 206 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI + L FT +E K +F ++ P+ + R+ GW +++ +LSA H Sbjct: 207 EIYDRDLQFTLEETKHYFSRTIALPLSNHHAQRLQSVTEGWIAGMKIASLSAELQNDPEH 266 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 G ++ YL + VLD + FL+K++ L +N L VTG ++ + Sbjct: 267 LLRNMHGG--TRSIARYLKEVVLDPLPEEVLDFLVKTSFLSRLNAELCNAVTGRDDSKAM 324 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L IER LFL +D+ G WF YHPL LR Q + +++ A++ ++ Q Sbjct: 325 LAWIERHNLFLSALDEQGYWFRYHPLLQENLRTMLQQNNDIDRKQLYELASQWFVEQKLW 384 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 SEA+ HAL+AG + A SL ++ L + LP + L + AW Sbjct: 385 SEAVRHALSAGKPVHSPVQDGASAQSLAEEGDIDTLISWMHHLPPSTDPSRIDLQINLAW 444 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG---NPDEAERLAKL 474 + + E LL + + R+D + + LR AI + N E+ + + Sbjct: 445 ALAHYFHFDESRQLLDNLDQMVLHHRDDLTRSTWCKLRVVRAICEAFAENIPESLAIVQP 504 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 L E+P G + + ++L +L + Q D +++ Sbjct: 505 LLAEVPCGDTWVDGLICNILSYCHVVNQRYHDALEVQQHMPSPESPLDNLFVSVYRAFII 564 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 ++ QG L A EK + Q L + A++ + R D E Sbjct: 565 AQCHLCQGDLGKAGWYAEKTLRQAECYTGTQSTSGATLAPLLAEIAYECQRGDSPEHLLA 624 Query: 595 SGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNRLENLL---GNGKYHSDWIS 650 +E + + P L +C L + +L A L + L G + + ++ Sbjct: 625 DRLEFIDRFSPPDALSRCYTYLARQALDNDMPYEAERLLEHAQRLAVSRGWQRLQAMLLA 684 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG---QWRNIARAQILL--GEFE 705 +VR+ TG + + A H Q +++R+++LL G+ Sbjct: 685 EQVRVRLQRGNFTGAEQLQRQLEQMAASFRMDAEHPCQRAIVMSASLSRSRLLLATGQAP 744 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A ++L E+ + S R L + W +G+ + A+ ++LA + Sbjct: 745 QACVLLAEMVSDQESRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLAEQQHLKG 804 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 F+ G+ + L + + ++ + R + K D P Sbjct: 805 LFLEAGDTLQPLLAGMNESSSACTEK--------RGVQGSWADKRGPVDGTPFNS--GSP 854 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 ++P L++RE Q+L LI G N++IA L ++A T+K HI+N+Y KL V R Sbjct: 855 DIP-----GELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQ 909 Query: 886 AVQHAQQL 893 A+ A ++ Sbjct: 910 AMSRALEM 917 >UniRef50_A9WHL2 Regulatory protein LuxR n=3 Tax=Chloroflexaceae RepID=A9WHL2_CHLAA Length = 890 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 241/905 (26%), Positives = 392/905 (43%), Gaps = 42/905 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN--DI 59 ++ +KL P D V R RL ++ A N RL +I +P G+GKTT+++ W A ++ Sbjct: 17 ILQTKLHPPSLADCFVPRPRLTERIHTALNNRLTIIAAPPGFGKTTVMAAWLATNTSENV 76 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 WYSL+E DN F + + AA+Q + E+ A L Sbjct: 77 AWYSLEEDDNDPICFFTCIAAALQTVAP--VSALESALGAAVANPRELTVALLNDLFVFS 134 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 + LV DDYH IT IH+++ + I H P N+ LV +SR P L + RVR QL EI Sbjct: 135 DRSVVLVFDDYHHITRQPIHDALVYLIDHLPNNIHLVFISRVDPPLPLGRWRVRGQLTEI 194 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L FT EA QF + + + A + + GW LQL ALS +++++ Sbjct: 195 RADDLRFTEAEAAQFLNQTMGLSLSAEAIRTLEERTEGWVAGLQLAALSLQKSSNPGQII 254 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A + +++DYL DEVL + R FLLK++IL N AL + + L Sbjct: 255 AAF--AGSNRYVADYLTDEVLARQPESLRDFLLKTSILERFNAALCNHLLQCVCSESILT 312 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 ++ER LF+ +D W+ YH LF + L++R A + ++HR AAE + F + Sbjct: 313 DLERANLFIIPLDSDANWYRYHHLFADLLKRRLAQANPAGITDLHRRAAEWFEQNNFTLD 372 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL- 418 AI H +AA + + ++ + H+EL+ L ++ALP L + P L W Sbjct: 373 AIRHWIAADEPERVAALMERTLSQSWGHAELAGLMHRIEALPDTVLAKYPILSAFLGWTW 432 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDT-MHAEFNALRAQVAIN-DGNPDEAERLAKLAL 476 + + LL RAE +KD + + F +R+ +A + A LA+ AL Sbjct: 433 LWLGYDNARTLPLLERAERNLKDEPQASYARGRFQVIRSYIARAVHNDAPHAWLLAEQAL 492 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 ++L R A S + V H G L ++ + ++ R A + + Sbjct: 493 QQLAEHDLLWRGFAQSNIAIVTHSMGLGLAQTERAYNEAIRLCRAAGDPTTAWIAECARV 552 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA--EASA 593 +++ G LQ + + +I Q L + ++ +A + L A E + Sbjct: 553 QVVRECGDLQRSMTLNRRLIDMIERQGAPAL-VRGWVHINQALGYYLINDLKHAWLEVNM 611 Query: 594 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 ++ SS P L+ A+L + L G+ AR + L L G + I A Sbjct: 612 TQNLQTQSSGMPDVSLRLYALLTRLELLNGNEAAARQAADDLVTLAYRGGVTNA-IDWAY 670 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF--EPAEIVL 711 VR D AA ++ R P+ F + + + + + L + ++ Sbjct: 671 AVRAELMFRLKDWAAFDSYARTYQPPQQP--LFFPYRLQTLLQVRYLTRQKAWNEGRRLV 728 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 E AR + ++ L +AG S A +L AL++ G++ F+ EG Sbjct: 729 AEQVRLAREAGYVEYEMELHIVSALLEQKAGNPSVAMNMLGRALEIGKANGYVRIFLEEG 788 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 E M L Q+ HR + F + +V + Sbjct: 789 EEMRHLLTQI------------------------HRLRRDDFVAELLAAFGKPAQVVQSS 824 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 PLT+RE +VL LI G SN +IA +L ++ T+KTH++++Y KL V R A A+ Sbjct: 825 LIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKHIYGKLNVDDRVKAAGMAR 884 Query: 892 QLLKM 896 +L + Sbjct: 885 ELGLL 889 >UniRef50_C0Z6I1 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6I1_BREBN Length = 856 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 217/898 (24%), Positives = 358/898 (39%), Gaps = 62/898 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIG 60 LI +KL P ++R ++ ++ A R+ L+ +PAG+GKTT +SQW G Sbjct: 9 LIATKLHVPKYGSDLLLRHQIWKEIDDAGAARVILVCAPAGFGKTTAVSQWTQNSGKPTG 68 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLDE DN RF Y A+ A G ++ + AS L + L E+A + Sbjct: 69 WISLDESDNDPVRFWRYFARAIDMAQEGVGKESSSVLHPQYTASAEQLMSVLLEEIAGFE 128 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 YLV+DDYHLI P IHE ++ I+H + +V+++R P + LRVR QL ++G Sbjct: 129 RDFYLVLDDYHLIKEPSIHEGLQTLIQHASFYMHVVLITREEPPFALHRLRVRKQLKQLG 188 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 S L F +E ++ F +L + + GW LQL ALS Q A K Sbjct: 189 SDTLRFNEEECRRLFCEQLGMSLSEQAIGLLSKRTEGWVAGLQLAALSM-QGKPEASKVI 247 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 +G N ++ +YL +EVL + + FLLK++IL + L VTGE + L Sbjct: 248 HHFSG-NDKYVGEYLTEEVLKRLPEKVQMFLLKTSILPRLTGDLCAAVTGEPDAHDILRM 306 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +ER F+ +D EW+ YH LF L + LP +H +A+ + + G+ EA Sbjct: 307 LERTNSFVIALDGVNEWYRYHHLFAELLLSHVRKTYNELLPALHISASCWFESHGWIMEA 366 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 HA D +++ HA + E L ++ L NP+L + AWL Sbjct: 367 TEHAFLGKDWNRASRLIVAHAPWMLKQYENITLRRWMRYFDSSWLESNPELCIAFAWLHA 426 Query: 421 SQHRYGEVNTLLARAEH--EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 + + LL A+ I D E LR + + GN D + + + ++ Sbjct: 427 VSNEIDQAEILLQLADEATRINHGSYDDCRVEMCVLRGYIEVMRGNVDLSLKYMEESVHM 486 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 P Y + E + + S Sbjct: 487 KPKFSRYFIVGIELNSDEPYVLRSRVALS------------------------------- 515 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 G+L E K + L + + + +L + ++ + I+ Sbjct: 516 ---GYLSNVNEYYPKLRAIWKHSGLG---ILAYGSIVLGELYYEQNDFEQLKYFVPRAIQ 569 Query: 599 VLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 + + S + L + A D + + +L W+S RV Sbjct: 570 LGTISLNFGVLVPVYLTLARWRKAEHRNDEMWLAMEEITSLCRQHDAPPHWMSFVETFRV 629 Query: 658 IYWQMTGDKAAAANWLRHTAKPEF---ANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 714 W + W+ AK A+ H + +AR + L A ++L L Sbjct: 630 RLWIEENRREEIEKWVEPYAKMNVDIVASRHEFER--MTLARVYLYLKNDSAAIMLLTSL 687 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 A + LLL+Q Y ++ +A + A+ LA G++ F+ EG + Sbjct: 688 KHEAEIKDRLGSRIEAFLLLSQAYMIQKQQHEAMECMRMAVTLAAPEGYVRTFLDEGSGV 747 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 A+ L L + + + E +L+ + + ++ P + Sbjct: 748 AKMLYSLYKSKNVSKQEMAYLSMLLKSVEKEF--------PTLDIQIRVSPAL------E 793 Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 LT+RE +VL LI G SN IA +L + T+K H+ ++ KL V +R A+ ++ Sbjct: 794 KLTERESEVLALIGEGLSNSDIADKLHLTLGTVKGHVHQIFSKLQVKNRAQAIVRLRE 851 >UniRef50_A1U0Z9 Regulatory protein, LuxR n=2 Tax=Marinobacter RepID=A1U0Z9_MARAV Length = 916 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 239/910 (26%), Positives = 397/910 (43%), Gaps = 22/910 (2%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DI 59 ML+ +K RP V R+RL L + RL L+ +PAGYGKTTL+SQW AG + Sbjct: 1 MLLTTKFLRPTPDSRAVQRQRLDTLLQPESGKRLNLVIAPAGYGKTTLVSQWCAGNSMPT 60 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLDE D++ +F Y+I A + A C+ + ++ LT L LA Sbjct: 61 AWLSLDEQDDKPRQFWQYVIGAFEHAGLIGLEDCKKLLARQDDDELTPAITGLLNVLAAD 120 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 + LV+DDYH+I+N +H + +F+ + P + + + SR P L +A RVR Q+ +I Sbjct: 121 GNAWSLVVDDYHVISNDTLHRQLAWFLDYLPPGILVTLASRTEPPLPLARWRVRRQVQDI 180 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 LAF+ +E ++FF ++ + + IC GW A+QL AL+ ++ A Sbjct: 181 HPGLLAFSEEECQEFFRSTMAMELSEDDIRSICRKTEGWVAAMQLSALAGKK---EAVLP 237 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 + L ++ +SDY++ EVL+ + + FLL++A + L V ++ Q +L Sbjct: 238 GQALGSPDSRLISDYVLTEVLEQLPEDLKDFLLETACCPRLCAPLCNAVRQRQDSQEKLS 297 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + Q LFL +D++ EWF YH LF L QR Q + E+ A + + G E Sbjct: 298 SLLSQNLFLIPLDNSNEWFRYHDLFREALLQRIQSAAPSHASELQSRAIDWLLRHGHVQE 357 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 I + D L +L H +L + + E L A+P + ++PQL +L+ W + Sbjct: 358 GIVQIVRRNDTDHLAAVLAEHGNNLIHGGYHLPVLEWLDAIPAHKIQDSPQLQMLRIWGL 417 Query: 420 QSQHRYGEVNTLLAR---------AEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER 470 +R ++ LL A+ +H+E + +R+ +A + A Sbjct: 418 FFANRVESLDPLLLEVEDLLDRRVADSHPDAEGALALHSEISLVRSYLARTRNDEKNASD 477 Query: 471 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 L + L+++ + V LG KGEL + ++ + L S Sbjct: 478 LTRQVLKDIDQISIPLKSVTYYGLGLDYFGKGELNDAEEALESAVHYGQVERKASTVLSS 537 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV---RIRAQLLWAWARLD 587 + I + +G A ET + Q ++E + + ++ ++ Sbjct: 538 GGLLAWIQYHRGDTDLALETTGRVRQWVDEHYADPSQPRLISCWQNSALTEIYRERNQIS 597 Query: 588 EAEASARSGIEVLSSY-QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 646 A+ ++ + +P Q + + + RGDL+ A L + H Sbjct: 598 TADGYLAPLLDHVRKGTEPGQHVVIQYVRGHLAFTRGDLETAVEALEDAVTTGRRRREHI 657 Query: 647 DW-ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 705 + A+ + + +G A L+ T N + +AR Q LGE++ Sbjct: 658 VFEPPAASALLARCYLSSGHAEKARACLQSTLDQPATNPLNREQNQIALARVQNALGEYQ 717 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A+ L L A L LL+ + GR ++ +L AL A GF+ Sbjct: 718 QAQDTLSALIPAAERNAHNRHLVEILLVYAEALAHEGRNDESDAMLEKALDRAENAGFLR 777 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREI--NQHHRHKFAHFDENFVERLLN 823 F E A+ + L +L T P +LR++ Q F E + Sbjct: 778 LFAEESTALREMLLDFPRLRT-PGRWNRELLGMLRDLAAGQPGEASFNSSQEAYHPIDTA 836 Query: 824 HP-EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 P P PL+QRE +VL LI+ G +N++IA + VA T+K HIRNLY KLGV+ Sbjct: 837 RPGGEPVNALAEPLSQREQEVLALIHQGLANKEIAERMSVAPATVKAHIRNLYGKLGVSR 896 Query: 883 RQDAVQHAQQ 892 R +A+ A++ Sbjct: 897 RTEALAKARE 906 >UniRef50_C5RKV5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RKV5_CLOCL Length = 895 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 210/917 (22%), Positives = 408/917 (44%), Gaps = 56/917 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK----N 57 LI +KL+ P+ + R L KL+ ++RL L+T+PAGYGKTTLI+ W + K + Sbjct: 7 LINTKLNIPILSSKVIKRTNLFKKLNSFLDYRLILVTAPAGYGKTTLITSWLSEKKKNKS 66 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETM-AQKRQYASLTSL-FAQLFIE 115 + W SL E DN+ E F SY +V + + E + + A+ +L + Sbjct: 67 TVAWLSLGEEDNEAECFWSYFFLSVYKKISEINHCIEDSKSFYNESATFNNLYLSHFINT 126 Query: 116 LAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQ 175 +A+ + + +VIDD+HLITN I E+M+F I++ P+N+ L+++SRNLPQLG+ LR D Sbjct: 127 IAKINEGIIIVIDDFHLITNDKIIENMKFLIKNMPDNMHLLLISRNLPQLGLPRLRAADS 186 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 +LEI L FT +E +FF+ + ++ + GW +Q+I LS + S Sbjct: 187 VLEINQYDLCFTPEETTEFFEKVSGTKFTYDIYHKVWSESEGWIAGIQMIGLSMKN---S 243 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + G N + +Y+ +EV +++ T+ FLL ++I+ + AL + N Sbjct: 244 SRNITGDQDGKNNKFVFEYIAEEVFLSLEEDTKKFLLYTSIIDEFSCALCDYLLDINNSS 303 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 ++EIE+ LFL +D+ F YH LF NFLR++ + + ++ A + Sbjct: 304 ELIKEIEKANLFLVSIDNEQSCFRYHNLFRNFLRKQLEKLGIETIHKLFNKVARWYENSN 363 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 ++A+ + + I+ + + E +L + + LP D + N +L++ Sbjct: 364 QLNKAVESYIKGKNFHKAVSIIEQLSGEIACRGEARVLHKWNQLLPIDIVKSNTRLIMNS 423 Query: 416 AWLMQSQHRYGEVNTLLARAEH----------EIKDIREDTMHAEFNALRAQVAINDGN- 464 AW M ++ G+V+ + + + + R+ + E AL + + N Sbjct: 424 AWAMVAEGDIGKVSEYIKMVQACEAVSFLKRSKGDEERDSQVRVEILALNSSANLTIINE 483 Query: 465 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 524 +E + A+ L F ++++ ++ KGEL +++ Q++ + + + Sbjct: 484 VEEIITDCEKAIPYLNEEEFLTQLIFFNI-ARAYFLKGELGKAIHYFQKSLERSIKTKET 542 Query: 525 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 584 ++ + + + QG + A + E+ + P+ L A + + W Sbjct: 543 YFRILTNKALTIYKKLQGNYKEAKQELEELISSLKVNGDVISPVLGILYAELADIHYQWN 602 Query: 585 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG-NGK 643 +D+A AR G+ + + + + + +L L NA + + ++ K Sbjct: 603 EIDKAMELAREGLALGLAGEDSWVI------AENNLILAKLYNATNFHKEYQEIVDKTKK 656 Query: 644 YHSD--WISNANKVR---VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 698 Y +D + + K G WL A P +++ I + + Sbjct: 657 YLTDNKFFDTSLKFDSFNAEIMLSKGKVNPVLAWLSDIA-PVISDDLIAIYPEVFIVKVK 715 Query: 699 ILLG--EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 756 + + +F+ A ++ +++N +L L +L ++Y + G + A + A++ Sbjct: 716 LYIYENQFDKARELISTIDKNVEKYQLNKVLVETKILSAKVYKKLGYIAKAISEIEKAME 775 Query: 757 LANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDEN 816 L+ + F+ EG M L++L + ++ + ++ Sbjct: 776 LSWQQKITRIFLDEGSWMEDMLKKLKNRLSGDDVSLYLDYLLVS---------------- 819 Query: 817 FVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQ 876 + E+ + L++RE ++L + G +N +IA + V+ T+KTH+ N+Y Sbjct: 820 ----FNSTSEIIIAVEDELLSKREIEILQSLEQGATNSEIAEKSFVSINTVKTHLLNIYT 875 Query: 877 KLGVAHRQDAVQHAQQL 893 KL V R AV A++L Sbjct: 876 KLDVHSRTRAVVKAKEL 892 >UniRef50_D1RTE8 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RTE8_SEROD Length = 950 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 232/908 (25%), Positives = 386/908 (42%), Gaps = 35/908 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KN 57 LI +K P + R RLL +L A+ RLA++ + AG+GKTTL++QW Sbjct: 58 LILTKFVPPRSSILLLQRPRLLKRLDQAHLRRLAVVCAGAGFGKTTLLAQWHQQLIGQGE 117 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLDE D+ +F YL+ A++ A +++ +S L A L +L Sbjct: 118 RVAWLSLDEDDDDVWQFIPYLLHALRPLYADWDADFWQNMEEQAPSSSLQLLAGLINQLH 177 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 LYL+IDD+H+I + +HE++ + +RH P L L++ SR P L ++ L+ +DQL+ Sbjct: 178 YCPHDLYLIIDDFHMINDAGVHEALSYLLRHAPAALHLIIGSRFHPSLSLSRLQAQDQLV 237 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI Q L FT +E + +F ++ P+ ++ R+ GW +++ +LS H Sbjct: 238 EIYDQDLQFTLEETRNYFSQTVAVPLSNQDALRLRSATEGWIAGMKIASLSPELREDPGH 297 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 G ++ YL + VLD + FL+++A L +N L VTG ++ + Sbjct: 298 LIHNLRGG--TRSIARYLKEVVLDPLPAEVLDFLMQTAFLNRLNAGLCNAVTGRDDSEAM 355 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 LE IER LFL +D+ G WF YHPL L + L ++H A+ + Q Sbjct: 356 LEWIERHNLFLSALDEQGYWFRYHPLLQETLCAALRHRADINLKQLHERASHWFAEQLLW 415 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 +EA+ HALAAG + A SL ++ L ++ LP L + AW Sbjct: 416 AEAVRHALAAGKPVHSPGQDGASAQSLAEEGDIDTLVSWMRHLPASVDPSRIDLQINLAW 475 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG---NPDEAERLAKL 474 + R+ E LL + + D R+ + + LR AI + N E+ + + Sbjct: 476 ALAHYFRFDESRQLLDSLDQMVADHRDGMARSAWIKLRVVRAICEAFAENIPESLAIVEP 535 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 L E+P G + + ++L +LA+ + D +++ Sbjct: 536 LLAEVPCGDTWVDGLICNILSYCHVVNLRYAEALAVQRHMPSPDSPLDNLFVSVYRAFII 595 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 ++ QG L+ A A + Q L + A++ + L+ + Sbjct: 596 AQCHLCQGDLENAERYAGNALRQAERYTGPQSTSGATLAPLLAEIAYERRPLESLDPLLA 655 Query: 595 SGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNRLENLL---GNGKYHSDWIS 650 +E++ + P L +C A L + +L G A L + L G + + ++ Sbjct: 656 DRLELIDRFSPPDALSRCYAYLARQALHDGMPQEAERLLEHAQQLAMSRGWRRLQALLLA 715 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG---QWRNIARAQILL--GEFE 705 +VR+ G + + H Q Q ++R+++LL G+ Sbjct: 716 EQVRVRLQRADRPGAEQLQRQLEQLARHARIDAEHPCQRAIAQHAALSRSRLLLAAGQMP 775 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A +L EL + R R L + W+AG+ + A L L LA + Sbjct: 776 QACKLLAELVTEQENRRDWLTAARLRALWSLALWKAGKNAAACTALQPVLPLAEHPHLMR 835 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 F+ G+ + L L H E Q + + A ERLL Sbjct: 836 SFLDAGDTLQPLL-----------LHMHEGPAACNE--QGAQLRLADKGALTGERLLQSS 882 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 L++RE QVL LI G +N+ IA L ++A T+K H++N Y KL V R Sbjct: 883 H----DVYWGLSERELQVLRLIAEGQTNKDIARSLAISAQTVKWHLKNTYAKLNVNSRTQ 938 Query: 886 AVQHAQQL 893 A+ A ++ Sbjct: 939 AMSRALEM 946 >UniRef50_A7NS05 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NS05_ROSCS Length = 1021 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 252/909 (27%), Positives = 396/909 (43%), Gaps = 33/909 (3%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-----AGKNDIG 60 +L P + R RL+ ++ + L LI++PAG+GKTTL+++WA A + + Sbjct: 121 RLRPPPPRPSLIARPRLIERIDDTLHAALTLISAPAGFGKTTLLTEWALHVQSAARAAVA 180 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLD D+ RF S + A+ A ++ + Q L L ++L Sbjct: 181 WISLDATDDDPVRFWSAITLALSVVRTDIGAHARSLLESPQRPPHMLLAHALLVDLNAVA 240 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 +P+ +V+DDYHLIT+ +HES+ FI H ++ LV+ +R P L +A RVR +L E+ Sbjct: 241 APIIVVLDDYHLITSAEVHESLTTFIEHLSPHVHLVIATRADPPLPLARWRVRGRLAELR 300 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 + L FT +EA F + + + D GW ALQL ALS R Sbjct: 301 AADLRFTTEEAAAFLHSTMGLDLPLDVIRALEDRTEGWVAALQLAALSIRDRADVEG-FI 359 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN------- 293 RR AG + + DYL +EV+ + FLL+++I+ M+ L + Sbjct: 360 RRFAGSH-RAIVDYLAEEVIGRQPDHIQTFLLRTSIVDRMSAELCDALLTPAADEPGATI 418 Query: 294 -GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWM 352 Q L+ +ER LF+ +D+ W+ YH LF LR R Q A + E+HR AA Sbjct: 419 PAQAMLDHLERANLFVTPLDEERRWYRYHHLFAEMLRDRLQRTQPALVAELHRRAARWHR 478 Query: 353 AQGFPSEAIHHALAAGDALMLRDILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQL 411 GF AIHH L AGDA D++ A + L+ + L + ALP D++L P+L Sbjct: 479 EAGFADAAIHHFLQAGDAANAADVIEAIANATLWEQGDAQTLLRWIAALPDDTVLARPRL 538 Query: 412 VLLQAWLMQSQHRYGEVNTLLARAEH---EIKDIREDTMHAEFNALRAQVAINDGNPDEA 468 L Q W + + ++ A +H + E A+R+ A G+ A Sbjct: 539 ALDQVWALLASIQFDAAEARAAELDHVLTRRDAQMRSIVIGELAAVRSVAARVRGDVPRA 598 Query: 469 ERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 527 A A + L +R +A L E +G+L+ + L + ++A A Sbjct: 599 LEYATHARDHLASIDCSLARAIAVMNLVEARLMQGDLSSAEQLCDE-LRVASLSRNLVIA 657 Query: 528 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 L ++ +SE+ QG L A ++A +L++ + + P+ + A + + RLD Sbjct: 658 LIGVLSRSEVYRNQGRLTDARALLDEALRLLDRRGASERPIVALIHVALADIFYEQNRLD 717 Query: 588 EAEASARSGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 646 EAE A + + L +L A+GD A R+E L + +Y Sbjct: 718 EAEYYANLALRRAERWWNNDILIHSTGLLSAIRRAQGDEAAAAKLAERVEQL--SLEYRV 775 Query: 647 DWISNANKV-RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIARAQILLGEF 704 WISN R TGD+ AA W + + ++ +AR + GE Sbjct: 776 GWISNHTLAGRAERLLRTGDRQAAERWAAGCGLTLADDPPPERFYEYLVLARVALARGEG 835 Query: 705 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 764 A ++ L + + R + L LL Q G + A++ L+ AL+LA G + Sbjct: 836 RTALPLIRRLLKQSEEGRHAIRMIETLKLLALTNRQIGDAASARQALIRALRLAEPGGLV 895 Query: 765 SHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 FV EGEAM L + R L F L H Sbjct: 896 RTFVDEGEAMKWLLADCGASIAPQAQQGDGDARRLLAYVDDLMGMFRSIPTTQTASPLVH 955 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 PLT RE QVL L+ +G ++++IA L +A +T+++HI+ +Y K+ +R Sbjct: 956 A-------NEPLTAREIQVLRLLATGRTDQEIATSLVIAVSTVRSHIKRIYAKINARNRT 1008 Query: 885 DAVQHAQQL 893 A A L Sbjct: 1009 QAAARAHDL 1017 >UniRef50_A9AVE7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AVE7_HERA2 Length = 1019 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 235/921 (25%), Positives = 379/921 (41%), Gaps = 46/921 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIG 60 L+ +KLS P V R + + L L+++ AG+GKTTLI++WA + + Sbjct: 116 LLHTKLSIPAVRSRFVSRRSIFTVFNQML--PLTLVSASAGFGKTTLIAEWARTQPYPLA 173 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LD DN+ RF Y + A+ + Q L+ + L L + Sbjct: 174 WLTLDSNDNEPSRFWGYSLTALHMVAPLLTTEALALLHAPQAIDLSFVLTNLINNLMLLN 233 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 PL LV+DDYH I N IH + + + H P+ LV++SR P + +A + +L I Sbjct: 234 QPLTLVLDDYHTINNQAIHNQLTWLLDHAPQAFRLVLISRTEPPMPLARWQAAGRLNTIL 293 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 +L F + + +FF + + A + + GW LQL ALS + Sbjct: 294 VDELRFNNSDIHRFFHTTMQLDLAADVLASLAARTEGWIAGLQLAALSLQGQPELTMSEG 353 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + N L DY EVL A + FLL++AIL + + L VT L+ Sbjct: 354 LDSSVSNQRALFDYFSHEVLQQQPSAIQQFLLQTAILDQLCEPLCAAVTDHGATAGMLDY 413 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESWMAQGFPSE 359 +ER LF+ +D W+ YH LF L + + AA + ++H+ A+ + G+P+E Sbjct: 414 LERSHLFVVALDRKHHWYRYHQLFRESLLHHAKQQWGAAGIAQLHKRASCWFEQAGYPAE 473 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 AI+HALAA D ++ + + E ++L+ L ALP + N L L AWL+ Sbjct: 474 AINHALAAADFERAGRLIAKIGFRMLWRGEHTILKGWLHALPATIIEHNAYLCLWSAWLL 533 Query: 420 QSQHRYGEVNTLLARAEHEIKDIRED------TMHAEFNALRAQVAINDGNPDEAERLAK 473 Q++ L+ + + D + AL+A +A G+ L Sbjct: 534 VEQNQLEASGYYLSLIDELLSHTMSDEAAETRAIDGHRKALQASIARRRGDMPTTLALTH 593 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT---------------EQMA 518 AL LP R + T L G+ + A + Q + Sbjct: 594 QALNALPRDSALLRSMITRNLCAGYIISGDTVAAEAALHQALCEQELLEASIASDHHHPS 653 Query: 519 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 578 + L I+ + + + QG A + + L EQH Q + Q Sbjct: 654 ERQHAHTIRLLLWIETTSLRWLQGQFHAAADLYRQTLHLAREQH--QHAVSAIACVNLGQ 711 Query: 579 LLWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 637 +L W L EA + GI L+ + L L + A G+ A + + + Sbjct: 712 ILRQWNNLAEAREYLQQGIGYSLNVGADVTRRNGLIELARIQQAHGEPAQALATMAQAVA 771 Query: 638 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK--PEFANNHFLQGQWRNIA 695 L + A + GD AAA W + + F + + +A Sbjct: 772 LAQTLPSPRGLL-WATTWQARLQLAQGDLAAATRWAQEYQRLANPFPQFNIYDAEDLTLA 830 Query: 696 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 755 R I G+ + A +LE+L ++ + + LL S A RVL+ AL Sbjct: 831 RILIAQGQHQQASALLEQLLPAYQAAGRLPSVIEVYLLQALNLAAQQDWSVAGRVLIQAL 890 Query: 756 KLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE 815 +LA ++ FV EG A++ L Q+ + + Q LR+ Q Sbjct: 891 RLAEPENYLRLFVDEGPALSNLLVQI----------EPQVQATLRQYVQRLLVVCELPRS 940 Query: 816 NFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLY 875 E+L P PL++RE V+ L+ +G+SN++IA +L V TIKTH++N+Y Sbjct: 941 TTPEQLS-----PIYRLIEPLSERELTVIRLLAAGFSNQEIAQQLVVTLNTIKTHLKNIY 995 Query: 876 QKLGVAHRQDAVQHAQQLLKM 896 KL V R A+ A++L + Sbjct: 996 SKLAVTSRTQAIARARRLNLI 1016 >UniRef50_B8G442 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=3 Tax=Chloroflexus RepID=B8G442_CHLAD Length = 917 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 228/934 (24%), Positives = 376/934 (40%), Gaps = 58/934 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK----N 57 L+ +KL P + R RL L A + R+ LIT+PAGYGKT+L++ W + Sbjct: 4 LVRTKLQPPEARPSLLARPRLYEWLRHALHSRVVLITAPAGYGKTSLLAVWIGESGKEWS 63 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 I W +LD DN R +YL+ A+ + A + + + A+L +L Sbjct: 64 QIAWLTLDAADNDLRRLFAYLLEALPHLSPTRRAQLQALLETEAGLDAEQWCAELLNDLV 123 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 E +V DDYH IT+ IH ++ F + H P L++ +R+ P L +A R R QL Sbjct: 124 EIGDATIMVFDDYHTITDNQIHHAIAFLVEHLPPRCRLIIATRSDPPLPLARWRARGQLA 183 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+ S LAFT +EA F + P+E + + + GW L L AL+ R + H Sbjct: 184 ELRSFDLAFTPEEAAAFLLEEMELPLEREQIVALLESTEGWPAGLHLAALALRHHPHQDK 243 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN---- 293 ++G ++ DYL+++V + + FLL+++IL + L V G Sbjct: 244 LVNAIISG--NRYVVDYLIEDVFNQQPFHIQQFLLQTSILDRLCGPLCDAVIGINEREIN 301 Query: 294 -------GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQW-ELAAELPEIHR 345 Q L E+ER LFL +D W+ YH LF + LR+R + + +HR Sbjct: 302 EQSHSSYSQSILTELERNNLFLFPLDTERNWYRYHHLFADVLRERLETGSSPDRIALLHR 361 Query: 346 AAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSL 405 A + A G AI+HAL A + ++ ++ + + L L +P + Sbjct: 362 RAGAWFAAHGMLPLAINHALRAQAFDDVVAMIEPIGLAVVSQVGEATLRRWLPQIPDTAF 421 Query: 406 LENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDT---------MHAEFNALRA 456 ++P+L LL+AWL + ++ + +A AE + + T + E +A+R Sbjct: 422 EQHPRLALLRAWLATTDYQMEDAAYWIAVAERALAGVASGTATSFGPIANLRGELSAVRV 481 Query: 457 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 516 ++A+ G+ D + + AL L R+ LG +G+L R+ + Sbjct: 482 RLAVLRGDNDRVLQEGQQALAWLQTDNQALRMRVAKDLGYAYFAQGDLMRAEQAFSEAIV 541 Query: 517 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF-QLINEQHLEQLPMHEFLVRI 575 + + + + + +G + A +T + ++ P Sbjct: 542 NGFNAGLPYISAMATSDDAYTKALRGSIGAAIQTCRETINHMLRRNRDRASPGIGLPFLT 601 Query: 576 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 635 A L A + + L L + + + ARGD+ A + + Sbjct: 602 LADLHGVRHEFAGALPALAEAESSIKPGNTTSYLCLLIVTARINRARGDVAGALRVVRQA 661 Query: 636 ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE-----------FANN 684 L + ++ N GD A L P +A Sbjct: 662 -RFLARQRKIDWVLAVLNGFEAQLALEQGDLVTAEYLLEAQLHPPVEFRMMPIAAFYARE 720 Query: 685 HFLQGQWR-NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 743 H ++ Q+ +ARA+ E + M LL AG Sbjct: 721 HIIRAQYEWRLARARAAGDSAELHALAAALAAPTQGETWQMLAPLDAALLRALALLAAGE 780 Query: 744 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREIN 803 DA +++ AL LA ++ FV GE + L +L LP ++ I Sbjct: 781 --DATDLIVTALDLATVERIVTPFVQAGEPLRIVLNRLSVRQRLPAYGEYLLSLI----- 833 Query: 804 QHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVA 863 DE + P L PL+QRE +VL L+ G SN +IA L +A Sbjct: 834 --------DNDEPLPMSMPVTSAPPTL--PEPLSQREIEVLRLMAEGRSNHEIATSLVIA 883 Query: 864 ATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMM 897 +T+K+HI N++ KLGVA R AV ++L + Sbjct: 884 VSTVKSHINNIFNKLGVASRTQAVARGRRLGLIP 917 >UniRef50_Q396V4 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Burkholderia RepID=Q396V4_BURS3 Length = 913 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 220/909 (24%), Positives = 383/909 (42%), Gaps = 31/909 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKN 57 L+ +K+ P V R RL+ A + RL +I +PAG+GKT+L W Sbjct: 15 LVATKVLPPRLPAGLVDRPRLVELAETAESKRLTVIQAPAGFGKTSLARLWLDCLRTRGA 74 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 GW SLD GD++ RF Y A+QQA G I ++ ++ + L EL Sbjct: 75 LAGWLSLDVGDDEPARFFHYFAQALQQAC-GDIGIAAGLSADASLLPPDAIVSTLINELV 133 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + LYL IDDYHLI +P IH + +FI H P + +V+ +R P L +A LR ++L+ Sbjct: 134 DVDDELYLFIDDYHLIGSPAIHAGVAYFIDHAPSQVHVVICTRTEPPLPLARLRAHNELM 193 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI + +L F+ E + F + A + GWA AL++ A ++ H Sbjct: 194 EIDAAELRFSFDETQSFVRRECPGTLADATVKSLFVSTEGWAAALRIAASVLKRGGAPGH 253 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 A R+ + + YL + +L+ + F+L++++L ++ L VTG + Sbjct: 254 DGAARIPSGASRPFAAYL-EGMLERLPADLVDFMLRTSVLDRLSAPLCEAVTGVATSRPM 312 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L+ I + L LQ +D GEWF YHPL +LRQR + +P++HR A+ + +Q Sbjct: 313 LDTIVARQLLLQPLDQDGEWFRYHPLMAEYLRQRLATQCPDAIPDLHRRASRWYASQALW 372 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 ++A+ HALAAG ++ + A +L +L L + P D + ++ L AW Sbjct: 373 TDAVTHALAAGARDEAVALMAHCAMTLVMRGDLLTLLGWQRQFPADLMQGQVRVSLAIAW 432 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIRE-DTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 M R+ + +L E + + E A+R+ +A +P A LA+ L Sbjct: 433 GMALAMRFDDALAMLDAIERTPGAGVDPADIRHECQAVRSVIAALQDDPRRAFALAQPCL 492 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 + + + +V+ V G L +L Q + +++ L Sbjct: 493 DRPSTDTWTTNVVSNVVR-FGHWKAGNL-EALYATPWIPQSGDDRRLVFASVYRLSLLGH 550 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 Q + A +A QL Q + Q+ + RLDEA A Sbjct: 551 AEMQQMHFELAERYFSEAMQLGTRHCGPQSISVAICAPMLGQIRYEQGRLDEARALVIDL 610 Query: 597 IEVLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL---GNGKYHSDWISNA 652 + V+ + L +LI+ ++AR + +A + L+R + L G + + + Sbjct: 611 MPVIDVAVLLDSLLTAYKLLIRIAIARAEFPHAYALLDRAQALAHARGWPRLTAAVLVER 670 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEIV 710 ++ + ++T A + R A + +R + A + + + Sbjct: 671 TRLHIAEGRLTEAAACVMQFDRLAGGDRGAQVDTSLEIDTYRALVTACVATARND-LQGA 729 Query: 711 LEELNENARSLRLMSD---LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 + L++ R L R +L + + G ++ A + L++A G Sbjct: 730 VAALDDGLRCASLRHSDYLALRLKTVLALVQLRGGERAAALDTFAEVLEVAEPAGIYRSI 789 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 V +G + + L+ + + R I R ++ + + Sbjct: 790 VDQGPEIGELLQAMRDQARASSQTRDRLAYIERLLDGCRA------------QYQQDAQP 837 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 + L+ RE ++ LI G SN++IA L +A T+K+HI++L+ KL V R AV Sbjct: 838 ARAAQRDMLSVRERDIVELIAHGQSNKEIARTLGIAPETVKSHIKSLFMKLEVDKRARAV 897 Query: 888 QHAQQLLKM 896 AQ L + Sbjct: 898 AVAQSLGLL 906 >UniRef50_Q0K1J2 Transcriptional regulator, LuxR-family n=1 Tax=Ralstonia eutropha H16 RepID=Q0K1J2_RALEH Length = 924 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 220/904 (24%), Positives = 379/904 (41%), Gaps = 33/904 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 LI +KL+ P R H + RER + L +L ++ +PAG+GKT+L+S+W A Sbjct: 19 LILTKLAPP-RTRHYIHRERSIGLLRPGMERKLTVLVAPAGFGKTSLLSEWKKVLAQEGC 77 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 +GW S+D D+ +F +YL+AA ++A + A ++FA+L + Sbjct: 78 AVGWLSIDRDDDDLFQFGAYLLAAAREACTQAGEPIPCGLKPDPLAPADTMFAELLNAVL 137 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + LV+DD+ + +P IHE++ +R+ PENL L+V R P ++ R QLL Sbjct: 138 ALPRQMVLVLDDFDRLASPAIHEAVFRLLRYAPENLHLLVAGRGEPGFPLSYFEARGQLL 197 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 ++ ++ L F EA+ FF + AA+ + GWA LQL + Sbjct: 198 KLDAEALRFDSAEAQAFFSAVSGHALSAAQIEVLLRATEGWAAGLQLATFALSATDKPDV 257 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + R + YL + V +V + FLL++++L M+ L VTG Sbjct: 258 FAER--LPFARRSVEAYLNENVFVHVPEPLQTFLLQTSVLDRMSVPLCDAVTGSSESHAT 315 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 E + + LF++ +D G+W+ YH LF +LR+R E E+ E+HR A+E + AQ Sbjct: 316 FEWLMARNLFVRPLDAEGQWYRYHALFAEYLRKRLVRERPHEVAELHRRASEWFAAQSLW 375 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 EA+ HALAAGD + A +L S++ + + LP +++ +L L QAW Sbjct: 376 QEAVRHALAAGDVDRAAGWVEQCAMTLVEASDVRTVLSWVAKLPPEAVHGRLRLRLAQAW 435 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIR---EDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + + +L E +I R + + E A+ A +A + + + + Sbjct: 436 ALALTMQTVAAKAVLQAVEDDIGHGRLPLTEVVRVELQAVTALIAGLSDESELSLEMGRK 495 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 L P + + + L L + + ++ Sbjct: 496 VLALGPDTGSWEEGIGLTTQIFGLSYAAGFDEVERLRRTLTLNTGADTPIYAKVYRQSMV 555 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 LF +G L A +T E + N + Q V A + + W LD Sbjct: 556 GLSLFVEGRLGEAVQTLEDVLRESNARAGRQSAASVLPVGYLAAIHYEWNDLDRVAELLD 615 Query: 595 SGIE-VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 +E L S + L + L G D A + E + + ++ ++ Sbjct: 616 ERLEMALQSCSLGPLIGFCVTLARLRLLAGKQDEAYRIVEDAEAVARSRQWLRMQVA-CK 674 Query: 654 KVRVIYWQMTGDKAAAANWLRHTA-----KPEFANNHFLQGQWR-NIARAQILLGEFEPA 707 + GD AA KP +L+ R +A ++L+G PA Sbjct: 675 AEAIRISIGAGDIGRAARIGHDLDGLVGQKPATLRGSYLETWQRFQVAHCRLLVGRGRPA 734 Query: 708 EIV--LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 V L+ + R+ + + ++L AG++++A + + AL G Sbjct: 735 LAVPILQGVQAEVRAAGMQYLSAQISVMLAVALHSAGQRAEAVQAMRAALTYGQANGLQR 794 Query: 766 HFVIEGEAMAQQLRQL-IQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 F+ G A + L L +Q + L E+E +R+ + A D+ Sbjct: 795 VFLDAGPAAREILDALCLQQDRLAEVEPWYVRRLCAGFDAPASEPDAADDQA-------- 846 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 E + S L+ RE ++L + G SN++IA + VA T+K H++N+++KL V R Sbjct: 847 ----EPVAASRLSAREVEILDYVARGLSNKEIARAIRVAPETVKWHLKNIFEKLKVNSRI 902 Query: 885 DAVQ 888 AV+ Sbjct: 903 QAVR 906 >UniRef50_A9B4I5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4I5_HERA2 Length = 876 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 227/910 (24%), Positives = 398/910 (43%), Gaps = 55/910 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-AAGKNDIG 60 ++ +KL P + V+R L+ +L A++ L LI++PAG+GK++L+S W A + + Sbjct: 5 ILATKLHIPQLRPNGVMRSHLIQRLDAASHASLNLISAPAGFGKSSLLSAWHATSQRPMA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LDE DN RF SY + A+Q + + Q ++ L EL+ Sbjct: 65 WLALDERDNDPSRFFSYFVHALQTLIPTLSSASLRLIHT-QPPAIEQALTNLINELSVVG 123 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 S + LV+DDYH+I N I +++ F + H P +L L++ +R P L +A LR R QL E+ Sbjct: 124 SSVSLVLDDYHVIENHAIDQALSFLLEHLPASLRLIIATREDPNLPLARLRARGQLHELR 183 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 S L F+ EA+ F + + + A+ + + + GW LQL ALS +Q T + A Sbjct: 184 SADLRFSLDEAQLFLNQAMGLALSPADVAALENRTEGWIAGLQLAALSMQQQTDRSRFIA 243 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRV--TGEENGQMRL 298 + + DYL++EVL A + FLL+++IL M +L + G +GQ L Sbjct: 244 SFSGSHH--FVMDYLLEEVLQQQTPAVQQFLLQTSILNRMCGSLCDALVSNGTNSGQQML 301 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE----LPEIHRAAAESWMAQ 354 E++E+ +F+ +D W+ YH LFG LRQR Q LA + L ++H A+ + A Sbjct: 302 EQLEQANMFIVPLDHERRWYRYHHLFGELLRQRLQRSLAQQATTSLEQLHIQASIWFEAN 361 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 EA HA AA D ++ L L + L+ALP + L + P L + Sbjct: 362 ELELEAFEHAAAANDTERAERLIEGKRVPLQFQGALLPIMAWLQALPTNVLNQRPSLWVT 421 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIR----EDTMHAEFNALRAQVAINDGNPDEAER 470 A + + + + L AE I + A+R +A++ + + Sbjct: 422 AAAVWLATGQVNGIEQRLQAAEQAIDQHPLTPKLHDLIGRIAAIRGTLALSQNDASQIIA 481 Query: 471 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 +K ALE L R LG +G+ + + +Q + ++ + + Sbjct: 482 QSKRALEYLAIDNLSFRTSTVWKLGYAYQLQGKRSAAKQAYEQAISIGQRSGNLVTVVLA 541 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 I + + L+ A T ++ + + L L A++ + W +LD+AE Sbjct: 542 SIGLGNLQESNNQLKLAATTYQQVLEASRQLALPAANCGAELG--LARIYYQWNQLDQAE 599 Query: 591 ASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 + ++ Q +++ C + + +A+ LD A L + ++ + Sbjct: 600 QHYQRALQAAQLLQHTDREVACYVIKARLLIAQNQLDQASLLLEQASAAAHQHRHTTQ-P 658 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI 709 + +V M G A+ + P I++AQ+ L + +P+ Sbjct: 659 AKIAAEQVRIGLMRGQVQQASQIAQTHQIP--------------ISQAQVFLAQQQPSAA 704 Query: 710 VLEELNENAR-SLRLMSDLNRNL-LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 + D + + +L + + AQ+VL +L A GF+ F Sbjct: 705 LALLQPALTIAQTNSWHDQSLWIKVLQSLALAALEDYAQAQQVLKPSLISAEPEGFVRVF 764 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHF-DENFVERLLNHPE 826 + +G+A+ L + + + AHF E + P Sbjct: 765 LDQGQAIQNLLSHI---------------NLTTSSKNYVNQILAHFTTERMPQLYPTTPS 809 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 +PE+ L+QRE ++L LI G+SN+ I +L +A T+K H R +++KL V R +A Sbjct: 810 LPEM-----LSQRELEILSLIAQGHSNQAICQQLHLALDTVKGHNRRIFEKLQVQRRTEA 864 Query: 887 VQHAQQLLKM 896 V A++L + Sbjct: 865 VARARELGLL 874 >UniRef50_C6CXC3 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXC3_PAESJ Length = 866 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 227/904 (25%), Positives = 372/904 (41%), Gaps = 66/904 (7%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYS 63 SKL P + V R RL L + RL L+ +PAG+GKTTL+S W + W S Sbjct: 17 SKLLVPNAASNYVDRPRLSDMLDRSGTCRLTLVAAPAGFGKTTLVSNWIGRRAARAAWLS 76 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL-AEWHSP 122 L+ DN RF S AA+ + G + S S + EL Sbjct: 77 LEPADNTFVRFWSCAAAAIDRTIPGFYEAAMPIFLSFGETSAESAMSFFLNELIGRITGE 136 Query: 123 LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 + L++DDYH I NP IH + + + H P L LV++SR +P L ++ +R R Q+LE+ + Sbjct: 137 MILIVDDYHFIDNPSIHNGLAYLLDHLPAALHLVIVSRTVPPLPLSRMRARRQVLELDGR 196 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 L FT EA + + + + E + + GWA L L A + T R Sbjct: 197 HLRFTADEAMELQNKTSETRLTPEEMTELDAKTEGWAVGLIL-AFHSLAGTGGNESFLRS 255 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 G N ++ DYLVDEV+ + FLL+++IL + +L VTG + + +E Sbjct: 256 FDGHN-RYVFDYLVDEVIHRQPQNVQSFLLRTSILERFSVSLCDAVTGSAHSASAISYLE 314 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELA-AELPEIHRAAAESWMAQGFPSEAI 361 + LF+ +DDT W+ YH LF LR R A E+HR A + +G EAI Sbjct: 315 KANLFVSPLDDTRTWYKYHHLFAEALRNRLNETYDLATRSELHRNAHRWFGERGLYREAI 374 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HALAA D + H + E + L L +P S++ L Q + + Sbjct: 375 KHALAAEDFDSAGQYMERHLPEMIGSGEEADLLRWLNEMPLRSIVRFTNLFFFQESVQAA 434 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 + R + L + A+ D P+ ER E + Sbjct: 435 KGRAADARRYLDQ----------------------VTALLDTEPELIER------ERIKE 466 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 + R+ S+ + +G++ + ++ + +H ++ +++ E L + Sbjct: 467 MQVHIRMYGNSLS----YYEGDIDGFIGQLKSNLDLLVRHG----SIANVVNMGEALLYR 518 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPM------HEFLVRIRAQLLWAWARLDEAEASARS 595 G + ++ A+ N E+L + V + A LL+ R+ E+ + Sbjct: 519 GPVGFGGRLRKIAYLSSNVSADEKLSLVLHRSLEGLGVILLADLLYELNRIKESRLTLEK 578 Query: 596 GIEVLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 + + P +L + A G +D AR+ + R + + W Sbjct: 579 ALYGGAFPRNPAALAPGYILLSKILQAEGQMDQARNVILRAIEEMRECR-SPRWQMIVEA 637 Query: 655 VRVIYWQMTGDKAAAANW--LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 712 TG+ AAA W RH E A+ + + +AR + GE A L Sbjct: 638 RLARLQLATGETEAAAAWINARHIRIVERADVS-REYENFTLARVLMSQGELRKALGWLS 696 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 ++ A+ ++ LLL + G DA L A +LA GFI F+ EG+ Sbjct: 697 RISLEAKQADRIASRIEALLLQAICNKELGDYGDAVGALAQACELARPEGFIRIFMDEGQ 756 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 A+ + + +L E A + I++ ++ + Sbjct: 757 ALTPLFERWLSEASLDEEMAAYANLLRERISEGGWTASYARMKDNL-------------- 802 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 T LT RE +VL I G SNE+I G+L ++ T+K + N+Y+KL V +R A+ A++ Sbjct: 803 TVKLTGREREVLRKIGEGLSNEEIGGQLFLSTGTVKKYAYNIYEKLQVKNRVQAISRAKE 862 Query: 893 LLKM 896 + + Sbjct: 863 MGLL 866 >UniRef50_A9B6R2 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B6R2_HERA2 Length = 870 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 249/902 (27%), Positives = 394/902 (43%), Gaps = 49/902 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 ++ +K PV + VVR +LL +L ++ RL ++++PAG+GKT L+SQW A K + Sbjct: 5 ILTTKCYIPVPRLNGVVRSQLLERLKERHDRRLTVVSAPAGFGKTMLVSQWIANCKQPVA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LD+ DN RF YL+AA+Q Q + S ++ L +LA Sbjct: 65 WLTLDQNDNDLARFLVYLVAALQTIEPTFGLEIIQRLQAPELPSTETILFLLLNQLATIE 124 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 LV+DDYH +T I E+MR + P L +VV++R P L +A LR R QL E+ Sbjct: 125 QQSILVLDDYHWLTAKPIAEAMRLLLERLPPQLQIVVITREEPDLPLARLRARHQLTELR 184 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 L FT EA QF + + A+ S + D GW T LQL A+S + S+ Sbjct: 185 VADLRFTVAEAHQFLSQTMELDLLASASQALTDQTEGWITGLQLAAISMQGQQASSPLID 244 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR--L 298 N + DYL++EVL + FLL +++L M +L V L Sbjct: 245 GFTG--NHRFVLDYLLEEVLQQQPAEIQTFLLVTSLLDRMCGSLCEAVLAAAPASGAATL 302 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQ-WELAAELPEIHRAAAESWMAQGFP 357 +ER LF+ +D W+ YH LF + LRQR L +LPE+HR A+ + A GF Sbjct: 303 AYLERANLFIVPLDHERHWYRYHHLFADLLRQRLAISSLGHDLPELHRRASHWYEAHGFG 362 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 EA HA AA D + ++ SL ++ L + L +P + P L A Sbjct: 363 IEAFRHAAAANDVAHIERLIDQQQISLHFRGTVTTLLDWLATVPKSVFEQQPSLWWRHAS 422 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIRED----TMHAEFNALRAQVAINDGNPDEAERLAK 473 LM + V LA AE ++ +D + + A RA + + ++ Sbjct: 423 LMLMLGQTSGVAEKLAAAEAALQSFPDDHQTRNLIGQIAASRAILLLAQYQFASTLAQSQ 482 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 ALE L +S A LG G+ + + ++ +A+ + + I Sbjct: 483 RALEYLAADNVFSLTSAYWTLGFGYLAHGDRAAARQALTKSVSLAQASGSSFIRILATIG 542 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 ++ ++ L A T ++ L EQ L+ + A++ + W +LD AE A Sbjct: 543 LGQLQESENQLYQAAATYQQILALAGEQPLQIIYEA---YLGLARIYYQWNQLDAAERYA 599 Query: 594 RSGIEVLSSYQP--QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 + +++ Y + + C L++ LAR + A ++L +L + + Sbjct: 600 QQSLDLAQQYDRLIDRSIICEIWLVRLQLARRANEQAATKLGQLAQTVRQQNFTQRLPEI 659 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 711 G A A + ++ +Q A+ + A +L Sbjct: 660 ITT-------QIGVLLAQAELQAAAELAQTIDSPLIQ------AKVLLAQANAAAALELL 706 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 + L E ++ + L+L Q G+K+ A R L AL +A G I F+ EG Sbjct: 707 QPLIEQFQAKGWLDQQLHGLILQAVAQQQQGQKAPALRTLQAALAMAEPGGLIRIFIDEG 766 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 + Q LR+LI L A++IL Q A ++ Sbjct: 767 PELKQLLRELIGRG----LGNAYARQILAAFGQMPLMPSA-----------------QVA 805 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 PL++RE +VLGLI +G SN+ IA +L ++ T+K H+RN+Y KL V +R AV AQ Sbjct: 806 LIEPLSERELEVLGLIAAGLSNQAIADQLYLSLYTVKAHVRNIYGKLSVNNRTLAVAKAQ 865 Query: 892 QL 893 +L Sbjct: 866 EL 867 >UniRef50_A4BAG8 ATP-dependent transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BAG8_9GAMM Length = 873 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 219/880 (24%), Positives = 409/880 (46%), Gaps = 32/880 (3%) Query: 28 GANNFRLALITSPAGYGKTTL-ISQWAAGKND-----IGWYSLDEGDNQQERFASYLIAA 81 A L ++ +PAG+GKTT + + A K+D + W SLD D+ FA+Y I+A Sbjct: 7 AACKLPLVVLCAPAGFGKTTAALHGFQALKDDEPEARMAWLSLDPEDSDPFNFAAYFISA 66 Query: 82 VQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHES 141 + + +C + R L SLF QL EL H L +V+DDYH I + +H + Sbjct: 67 IAKQVRLSDQLCHSGVHDRN-TQLKSLFGQLLFELDRIHQRLIVVLDDYHAIDSEEVHAA 125 Query: 142 MRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCR-LS 200 + + +H P ++TLV+ +R+ P I +LR++ + ++ + L F EA+ FF Sbjct: 126 VAYLAKHLPPHVTLVLTTRSDPPASIMSLRLQGLVADMSADLLGFNVAEAQTFFQQVGAG 185 Query: 201 SPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVL 260 ++ + R+ + V GWA LQLI L + AR L + + + DY EV Sbjct: 186 FQLDEGDVKRLLEHVEGWAVGLQLIVLGLKSKPSYDELKAR-LEQKDLNAI-DYFDSEVF 243 Query: 261 DNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCY 320 D++ + F+L +++++ N + + + N LE ++RQ LF+ + ++ +WF Y Sbjct: 244 DSLPEDVKRFMLSTSVVKRFNAEVAEALAEDVNVHEVLEYLQRQHLFIVQFNEPQQWFRY 303 Query: 321 HPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNH 380 H L +FL+ + + ++ E+H A+++++ G+ A+ HA+ + D + DIL + Sbjct: 304 HHLLRDFLKHKLITQSGGDVRELHHKASQAFLKMGYIVGAVDHAIRSQDQKQITDILRTY 363 Query: 381 AWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIK 440 L + + L++ L L +++ + QL L+ W+ V+ +L AE I+ Sbjct: 364 GNDLNHKAHYDLVKRCLAELSDETISSDTQLTLVSCWVESIYGDPNRVDHILTMAEAHIE 423 Query: 441 DIREDT--MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL 498 + D+ + AE+ +R+Q + G+ AE+ A+ ALE L P R + V Sbjct: 424 NDNADSRQLRAEYQTVRSQAYFSMGDFVGAEQAAREALE-LFPDNNTRRQSPLLIYANVK 482 Query: 499 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 558 +GEL R+L++ +++E ++RQ LWSL QQ++I + + ++ + Sbjct: 483 FEQGELDRALSIYEESELLSRQEANHDAVLWSLNQQAQIWKQRCDFARSISLAKEVQEYA 542 Query: 559 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 618 + ++ F + +A+L L EA + ++ L++ Sbjct: 543 AQHNVNSGFNACFSLFNQAELALEAYHLREARLLINEVGLLCQNWDEFWSQHLFGWLLKM 602 Query: 619 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 678 + +G AR + E +L I + +V+++YW D WL+ A Sbjct: 603 EMLKGKPTVARDLAAQHEGILARENVAEHLIPYSMEVQLLYWWQNEDIKKIETWLK--AT 660 Query: 679 PEFANNHFLQGQWRNIARAQ--ILLGEFEPAEIVLEELNENARSLR---LMSDLNRNLLL 733 P H ++ A+ I G ++ A + LE++ R + R LL Sbjct: 661 PPVDKFHSMRDYVILRAQIYGHIACGRYQEASMRLEQVYSPLREFEGRPYQLEFIRLGLL 720 Query: 734 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 793 L ++S+A L+ L L + ++ + + + ++ ++ LPE + Sbjct: 721 HVALLNLQNKESEAMTELMLLLPLIQQYSIVASILFLRQWVMPLFEKM-DVDALPEDQAR 779 Query: 794 RAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSN 853 +++L Q + EVP+ + ++++EW+VL I G SN Sbjct: 780 FVEQLLILYKQRNTSSR-----------RGEEEVPDGLLALGISKKEWRVLQYIIDGKSN 828 Query: 854 EQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 + IA + +A +T+KTHI NLY+KL VA+R++A+ ++L Sbjct: 829 DDIAQTMFIAVSTVKTHINNLYKKLSVANRKEAIALGKEL 868 >UniRef50_C0ZJP0 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJP0_BREBN Length = 858 Score = 560 bits (1443), Expect = e-158, Method: Composition-based stats. Identities = 215/909 (23%), Positives = 370/909 (40%), Gaps = 61/909 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 ++ +K + P ++V R RLL K+ RL + +PAGYGKTTL+SQWA Sbjct: 1 MLKTKTAMPAVRSNSVHRSRLLQKMDAGLQCRLTALYAPAGYGKTTLLSQWAHQYGGSTV 60 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNG-HCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLDE DN RF Y++ + ++ E + + S+ + L ELA Sbjct: 61 WLSLDEMDNDLIRFWRYIVFTLSESGFAELSERMEPAMKATSHTSIFTFIDSLLNELAAT 120 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 PL +++DDYH+I++ IH S+ +F+ + P ++ L + SRN VR ++ I Sbjct: 121 TQPLAIILDDYHVISDETIHNSLAYFLEYLPSHVHLYIASRNTLPFSTVKWNVRHEVCHI 180 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + Q F++QE F+ P+ + ++ GW LQL A+S NT + + Sbjct: 181 EAGQFLFSYQETDSFYRQVHDLPLTETQIEQLVKSTEGWIAGLQLAAISL-VNTENHDQF 239 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 G + ++S+YL EV+ + R FLLK+++L M+ + +T Q L Sbjct: 240 FAGFTGSH-RNISEYLFHEVIMRLPEEERSFLLKTSVLARMDAHVCQALTSLPQCQQMLT 298 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + RQ +FL +DD G W+ YH LF +FL + + E ++HR A+ES+ +G E Sbjct: 299 RLHRQNIFLIPLDDYGTWYRYHHLFADFLLSQLEQTAPGEARKLHRLASESYAERGMMDE 358 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 AI HA+AA D + L H L E S +L ++P + +P L+ +L+ Sbjct: 359 AIEHAIAAADYTLAASFLAQHIPVLLQRGEFSSFLRTLDSIPDHANHFSPLFRLIYVFLL 418 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNA----LRAQVAINDGNPDEAERLAKLA 475 + L + E + + T H +F + +RA + G+ + + Sbjct: 419 VACGFTDRAELALTQLEQSAASLEDSTEHQQFLSGLFFVRANLVFATGDFESWIASSSQL 478 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 ELP + H TE R+ + S Sbjct: 479 SGELPESPLF------------YHFN---------YNTTEPFIRRTRFGLKGMLS----- 512 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 + ++ + ++ + ++ A+ L+ RL+E+ + Sbjct: 513 ---------DQTEAVGKHFSSILEAHGWKDSLINLYTIQALAEGLYEENRLEESLDHLQR 563 Query: 596 GIEVLSSYQPQQQLQCLAML-IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 V Q L A+ + L G+ AR ++ + + S W++ Sbjct: 564 VRLVALQKQIPGLLVPYALTSAKHKLVEGNFVAARKIISETRETVTSWGG-SYWLNPLQA 622 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP--AEIVLE 712 GD A A L P N +Q + + ++LL + + A +L Sbjct: 623 FLAHIAIQEGDIALAKTELSKL-PPSILNQPSIQRELEVLTYVRLLLAQQQEQEALRILT 681 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 L ++ L+ +L + Q G K +A L +AL + ++ F+ EG Sbjct: 682 ILKPSSIREELLISQVDIAILQALAHQQCGNKKEALAFLHEALLIGGNNCYVRSFLDEGT 741 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 AM+ L R+ + Q A + + E + Sbjct: 742 AMSHLLHD-------------YQLRLKKRSQQPGPSVPAAYVNQLLSLFPKKMEKRKAPL 788 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 PLT +E +L ++ G SN+ IA EL T+K ++ +Y KLGV +R A+ AQ+ Sbjct: 789 IEPLTGKEMIILSMLAEGASNKMIADELGNTLGTVKVYLHRIYGKLGVTNRTQALLKAQE 848 Query: 893 LLKMMGYGV 901 + + V Sbjct: 849 ISLLENSPV 857 >UniRef50_Q46V70 Regulatory protein, LuxR:Tetratricopeptide TPR_4 n=3 Tax=Cupriavidus RepID=Q46V70_RALEJ Length = 947 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 222/932 (23%), Positives = 364/932 (39%), Gaps = 62/932 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KND 58 + +KL P+ + V R + + A RL L+ +PAG+GKTT + Q A Sbjct: 40 LAAKLRPPLLTPYQVERSAICDTICAAGFVRLVLVRAPAGFGKTTTMLQCRARLEAAGVP 99 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W +LD DN RF L A+ G A +L ++ A Sbjct: 100 TVWLTLDRADNDATRFLGSLEVALSPVLEGAPKRPSDHAGADAGEQALALMDRV----AR 155 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 H L +DD+ + NP + + + P VV +R +P+ G+ LR R +LLE Sbjct: 156 HHGAFTLFLDDFEALQNPAVVGLVWQLVESLPPGARAVVGTRWVPETGLGRLRARGELLE 215 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I QL F+ E + F +E A S + GW TAL L ++S + Sbjct: 216 IEPAQLRFSASETESFLRHARGLKLEQAAISALHRRTEGWPTALWLASVSMERRAQPETF 275 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG-------- 290 A + + ++DYLV++V ++ R FLL+++IL + L + Sbjct: 276 IAGF--SGSNAAIADYLVEDVFHHLPEPVRDFLLRTSILDQLCGPLCDALYQWGPQPPAV 333 Query: 291 ------EENGQMRLEEIERQGLFLQRMDDTG-----------EWFCYHPLFGNFLRQRCQ 333 N L +ER LFL ++ +W+ YH LF +FLR + Sbjct: 334 ADADAPAGNSADILAWLERANLFLLPLESERYGERGTGEQSQQWYRYHSLFSSFLRGQLT 393 Query: 334 WELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLL 393 + + E+H AA+ + QG P AI HA+AAG +L A L + LL Sbjct: 394 QTMPQAVAELHMAASRWYEGQGRPVPAIEHAIAAGALDHALQLLDGSAGGLLAQGRMRLL 453 Query: 394 EESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNA 453 L+ +P L P+L + +AW + E LL + E + A A Sbjct: 454 TRWLEMVPPAELARWPKLQIARAWAVSFTRGPAEAIALLQASSTE---DATGELLAHVRA 510 Query: 454 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ 513 LR + DEA A+ L LP G+ + + + + + G+ + L+ Sbjct: 511 LRHMLLNMMDRFDEARAFARNELPPLPMGYAFPDAILATSMARLAAVSGDYVEARRLLAV 570 Query: 514 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 573 Q R D ++S + I QG LQ A A + + + Sbjct: 571 ARQAVRGSDSNFNKIFSESVEGLIDLRQGRLQQALGRFRIAARTMLPNRFGPTNGNAMAC 630 Query: 574 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQL 632 + A+ L+ D + + + Q + +L + + RG++D A L Sbjct: 631 ILLAEGLYETGDSDRSGRLLNVYLPLSRDLGLADQIITGHLVLARIAFERGEVDQAHEWL 690 Query: 633 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF----LQ 688 LE+L G+ + + + +A R G++ AA L+ P Sbjct: 691 AALEHL-GHHRGLTRLVMSAMLERARLALRQGNRHAAEEALQRAGDPALWRTRPGVSSFA 749 Query: 689 GQWRNIARAQILLGEF----EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 744 +I ++ L +E A S +LM + +LL Q Y + G Sbjct: 750 SDVEDITVGRLRLALHVEPTAQVREAVERELAAAVSNQLMRRALKLRILLAQAYQRTGDG 809 Query: 745 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQ 804 + A V+ +AL+ GF+ F EG+ + + + Q L +R+L Q Sbjct: 810 AQALVVMAEALRFGAAEGFVRIFADEGDEVRRLVAQACARQG-GNLPSAYVERLLGACGQ 868 Query: 805 HHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAA 864 + + PLT +E +VL L+ G+SN +A L V+ Sbjct: 869 GPDVAPSG-------------QAAPAPLVEPLTPKEQKVLQLLAEGFSNVAMAQRLFVSE 915 Query: 865 TTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 TT++TH+RN+ KL ++R AV A+QL + Sbjct: 916 TTVRTHLRNISAKLHASNRTQAVAIARQLGLL 947 >UniRef50_C1DE28 Transcriptional regulatory protein AcoK, LuxR family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DE28_AZOVD Length = 900 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 230/901 (25%), Positives = 368/901 (40%), Gaps = 36/901 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKN 57 LI +K P +VR RL+A+L LAL+ + AG+GKTTL++QW Sbjct: 23 LIATKFVPPRSPGLLLVRPRLMARLEPLAERSLALVCAGAGFGKTTLLAQWRGQLQEHGQ 82 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLDEGD+ E F YL+ A+ G +A S+ +F L + Sbjct: 83 AVAWLSLDEGDDVPEYFCHYLLDALLPLHPGLGWRLGFLAAG--LPSIDLVFGHLINAVQ 140 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 +PLYL++DDYH I NP IH + + + H P N +++ SR+LP L ++ LR R+QL+ Sbjct: 141 AVEAPLYLIVDDYHAIRNPAIHRAFAYLLEHAPANFHVLLGSRSLPTLPLSRLRSRNQLI 200 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+ + L F EA+ +F + + A++ R+ + GW T +Q+ LS + A Sbjct: 201 EVDTNDLRFNLCEARHYFADSAALTLSNAQTQRLLELTEGWITGMQMATLSPSIKDNPAQ 260 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 G + YL D V + + A FL++++IL L VTG +G Sbjct: 261 AIDSLSHG--GRLVGRYLEDVVFEPLPAAVDDFLMRTSILDRFCAELCDAVTGRHDGHAM 318 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L+ IER LF+ +DD G+WF YH LF L+ R + ++ +H A + Q Sbjct: 319 LDWIERHNLFVAALDDHGQWFRYHHLFAETLQARLRRRTDLDIAALHERAGNWFAGQSLW 378 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 +EA HALAAG A SL ++ L L+ LP + L L AW Sbjct: 379 AEATRHALAAGKVESAPGRAGLGAQSLAERGDIDTLLGWLQQLPITADEHRISLQLNLAW 438 Query: 418 LMQSQHRYGEVNTLLARAEHEIK-DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 + + R+ E LL + + +A+ A N LA+ L Sbjct: 439 ALAHRFRFDESRRLLGELRRWFAVHPARRDLRVKLDAVAAICEAFAENVQTGIALAEPLL 498 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 ++P G + + +VL G+ + A+ + T + + + Sbjct: 499 AQIPCGDSWVDGLVCNVLSYCHLVLGQHEEAQAVQRHTLYPGAPTENLFVTVHRAFILGQ 558 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS- 595 QG L+TA +A + + Q L A+L + + +A R Sbjct: 559 SHLRQGDLRTAEACFLQAMESADRLTGPQSSGSATLAASLAELAYEHGDWERLDALVRQR 618 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 G+++ L L + +LA D AR L + + ++ + + Sbjct: 619 GLQIDRVAPLDGVLSVYRALSRRALAEDDGVQARLLLQHGQEIAAQRRW-NRLQAALLAE 677 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ-WRNIARAQILLGEFEPAEIV--LE 712 +V D A A + LR + + + IARA++LL + L Sbjct: 678 QVRLQLQRDDLAGAEHMLRRIEMLKSDEGTIPGCRHYARIARARLLLAQGLGLAAADCLA 737 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 + + + + R L WQ + A LL AL+L R + G Sbjct: 738 GVVAEFEARGQLLEAARLRPLWAIALWQGDERDAAVATLLPALQLGQRENLLCSLTDAGR 797 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 A+ L + E ILRE F Sbjct: 798 ALLPLLSRCASAEAGSG-ELAGYLAILRERLGGDDCAEPPFS------------------ 838 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 L++RE Q L L+ +G SN++IA L+++ T+K H++NLY KL V R A+ A++ Sbjct: 839 ---LSERESQTLRLVAAGQSNKEIARTLDISVETVKWHLKNLYGKLQVTSRTRAMSRARE 895 Query: 893 L 893 L Sbjct: 896 L 896 >UniRef50_B5WTD5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Burkholderia RepID=B5WTD5_9BURK Length = 921 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 201/910 (22%), Positives = 363/910 (39%), Gaps = 33/910 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 LI +K+ P V R LL +L + L+ +PAG+GKTTL++ W A + Sbjct: 16 LIQTKMMPPRIPAGCVQRPELLRRLDERRPRHVTLVIAPAGFGKTTLLAVWSEAQARKRR 75 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLD D+ ++ +YL+AA+ +A+ + + + + ++ + L +A Sbjct: 76 PVAWLSLDGEDDDPQQLGAYLVAALSRASKDVAWQAQQLLDNDAHTPVRTIISVLLNGIA 135 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + ++LV+DD ++ + + +R+ PENL +++ +R P L + LR D+L Sbjct: 136 AFGRDVFLVLDDVDRLSAKPVLAIVSRLLRYAPENLHVLLGARGEPALSLGGLRSPDKLS 195 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + + L F+ +A+ FFD ++P+ + GW LQL +L + A Sbjct: 196 RVNADDLRFSLDDAQAFFDRTGNTPLNRNSVELLNTATEGWVAGLQLASLGLNRVDDVAA 255 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT-GEENGQM 296 ++ + YL D V ++ FL ++IL + L V GE + Sbjct: 256 LASHLAGSRFG--IDRYLSDTVFAHLPPHMLTFLQYTSILERLTATLCDEVMGGEADSGE 313 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 +L+ +ER +F++ +D+T +W+ YH L + LR+R + ++P +HR A+ + Sbjct: 314 KLDWLERHNVFIRPLDETQDWYRYHALLSDALRRRLVRQTPRQVPLLHRRASLWFARARL 373 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 EA+ HALAAGD N A + + +L ++ LP D + P+L L +A Sbjct: 374 WPEAVRHALAAGDVDQAAQWAENCAMEMLQRGDPFMLPGWIRKLPPDVIAGRPRLRLAKA 433 Query: 417 WLMQSQHRYGEVNTLL-------ARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 W + + + R + + + ++ AE NA+RA +A + + A Sbjct: 434 WGLAMSLETARASQEIGAIVDEFERMSRDDRSVADEVAWAEINAIRALIACVSDDSEHAL 493 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT-RSLALMQQTEQMARQHDVWHYAL 528 L + P + R S L +G+ + S + +Q+ + Sbjct: 494 ELGRAIEASTAPAAPWVRYYGQSAEIFGLMYRGQFSYISRVWRARVDQVGISRKPNSADM 553 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 G L A E A + ++ E + A + + L + Sbjct: 554 LRDAVYGIAALVHGELADARRVMEVALRYSEDKLGEWSAGAAAVAGCLASIHYECNELSK 613 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR-GDLDNARSQLNRLENLLGNGKYHSD 647 + + P L + L R G A + L + ++ Sbjct: 614 VRKLLEGRMTIALETSPLAALMRFMLTASRVLWRDGKKGPALAVLEDGRQVAITRRWLRL 673 Query: 648 WIS-NANKVRVIYWQMT--GDKAAAANWLRHTAKPEFANNHFLQGQWR--NIARAQILLG 702 ++ +A VR + + A W + A++LL Sbjct: 674 KLACDAETVRQLLADGRLVEARQIADELSASVPMMCEGRRGSAMETWASYCVLEARVLLA 733 Query: 703 E--FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 760 E E A L ++ +L LLL ++ +G A L +AL++ Sbjct: 734 ENAAEDAVGFLTRSLDDLVALGWRYAEAVVSLLLALVHEHSGASDKAFSALENALRIGCA 793 Query: 761 TGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVER 820 G IS FV EG M L + + I + + FDE Sbjct: 794 MGLISSFVDEGPPMRALLERFRRTP----------SEISTAHAAYIGTLLSAFDEVEKMP 843 Query: 821 LLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 + I L+ RE ++LG + G SN++I L++A T+K H++N+++KL V Sbjct: 844 SPSSSGADTKIAPGTLSARELEILGYVARGMSNKEIGRSLKLAPETVKWHMKNVFEKLNV 903 Query: 881 AHRQDAVQHA 890 R +AVQ A Sbjct: 904 NSRFEAVQSA 913 >UniRef50_C8X673 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X673_NAKMY Length = 1003 Score = 554 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 238/1004 (23%), Positives = 384/1004 (38%), Gaps = 118/1004 (11%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNF-RLALITSPAGYGKTTLISQWAAGKND-- 58 ++ +KL TV R RL L+ + RL LI++PAG+GKTT ++QW + Sbjct: 5 ILHTKLYAARVRGRTVPRPRLTEHLTDFLSGGRLLLISAPAGFGKTTTLAQWVQTLSADA 64 Query: 59 -----------------------------------IGWYSLDEGDNQQERFASYLIAAVQ 83 + W SLD DN+ RF +Y++ A Q Sbjct: 65 ATGDRTGTGPAPGQDTGSRGPGDPAVAQTTNPPAVVAWLSLDPADNEPGRFCAYVLTAFQ 124 Query: 84 QATNGHCAI----CETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 A+ G A E A A T + A+L ++A+ + LV++DYHL+ +P +H Sbjct: 125 HASPGLGADQLHRLEQQAPATTAADATPMIAELLNDIADLPHDVVLVLEDYHLVESPDVH 184 Query: 140 ESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRL 199 + + + + H P L + V +R P L +A +RVR +L EI + L FT EA + + + Sbjct: 185 DQLAYLLEHAPPQLHVAVSTRVDPPLPLARMRVRGELTEIRAADLRFTAAEADTYLNGLM 244 Query: 200 SSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEV 259 + + + + GW ALQL ALS + A A + ++ DYL +EV Sbjct: 245 QLGLTQPQVTALGSRAEGWIAALQLAALSMQGRDDVAAFIADFTG--DDRYIVDYLAEEV 302 Query: 260 LDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFC 319 L TR FLL +A+L + AL +TG ++G+ LE++ER +FL +D+ W+ Sbjct: 303 LARQPEQTRRFLLHTAVLDRLTGALCDALTGRDDGRRTLEQLERANMFLVALDNQRRWYR 362 Query: 320 YHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLN 379 YH LF + LR R + +P++H AA+ + P +AI HALA + D++ Sbjct: 363 YHHLFADVLRARLLDQQPTLIPQLHLAASRWYADDQQPEDAIRHALAGSHMDLAADLIEQ 422 Query: 380 HAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEI 439 + + LK LP D + P L + A + V LL +AE + Sbjct: 423 AIEQSLRERTEATMRGWLKQLPPDVVAARPALGIALAGATLATGETAGVAQLLNQAEQRL 482 Query: 440 KDIRE------DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSV 493 + + R+ +A + A+LAL+ L G R A+++ Sbjct: 483 NAPGDAHADTTGRLPGWVEVYRSGLAQAQHDTRGTLTHARLALQRLDAGDSTGRAAASAL 542 Query: 494 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 553 +G G L + + + L + ++I QG LQ+A +T + Sbjct: 543 VGLASWATGNLQGAHEAYTAAQSAFKATGYLTDVLGCAVVLADIRKTQGRLQSALDTHLE 602 Query: 554 AFQLINEQHLEQLPMHEFL---------------------VRIRAQLLWAWARLDEAEAS 592 A Q + + P A + EA Sbjct: 603 ALQYVTTKLHAAEPTQTPPRQGPADTGAAELTGLRGIVDTYIGIADIHRERGNPTEATRL 662 Query: 593 ARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 R S PQ Q + + Q + A GDL+ A L + L +H D I Sbjct: 663 LRLAESAGESAGLPQAQYRRHVVQAQIARADGDLETADQLLQNAQRL-YVADFHPDVIPV 721 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE-------- 703 A R W G W R A ++ ++ ++ + L Sbjct: 722 A-ATRARLWVAQGRLDGVFAWARGRALA-LSDEPAFTTEYEHLTLVRAHLAHLSADLSAH 779 Query: 704 --------------------FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA-- 741 + L+ L +A + + L+ A Sbjct: 780 LRHHHAADGHPAGDPNRAPGVDQVLGFLDRLLTHAEAGGRTGTVIDALIQRAIALRLAAG 839 Query: 742 --GRK-----SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR 794 G + ++ R AL LA G+ F+ EG + LR ++ E Sbjct: 840 SRGNRPGQGTDESLRTFHRALDLAEPQGYARTFLDEGSVVTDLLRDALRAGLNSEYVTAL 899 Query: 795 AQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNE 854 + A D + + L+QRE VL L+ + S Sbjct: 900 LNQQPHSTTPDLTGTVAPTDAG------PQTDRRMEVVVERLSQRELDVLRLLATDLSGP 953 Query: 855 QIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMG 898 IA L V+ TI+TH +NLY KLGV +R+ AV+ A++L + G Sbjct: 954 DIARHLVVSLNTIRTHTKNLYAKLGVTNRRAAVRRAEELHLLQG 997 >UniRef50_Q2JAS8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Frankineae RepID=Q2JAS8_FRASC Length = 914 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 219/904 (24%), Positives = 366/904 (40%), Gaps = 19/904 (2%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKND 58 + +K P V R+RLL L RLALI +PAG+GKTTL QW A Sbjct: 11 VSTKFQAPTYDTQLVGRDRLLDVLRDGRARRLALIHAPAGFGKTTLAVQWQRVLRAEGVP 70 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 + W SLD DN F S+LI AV++ + + + + +L +LAE Sbjct: 71 VAWLSLDRDDNDAVWFLSHLIEAVRRVEPTLGGDLVEVLEGHSDDAQRYVLTELVNQLAE 130 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 PL +V+DD+HLI P ++ F + P NL L+V SR + L+VR+Q+ E Sbjct: 131 HRRPLAIVLDDWHLIDAPQAVAALEFLLEAGPANLHLIVTSRTRSP-AVGRLKVRNQVTE 189 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I + QL F H+E+ F +++ + R+ GW ALQL LS R + + Sbjct: 190 IDATQLRFDHRESAAFLLELNELDLDSTDVHRLWSSTDGWVAALQLATLSLRDSADPSA- 248 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 R +G + S L DYL + V D + FLL +++ + L V+G+ GQ L Sbjct: 249 LIRGFSGRHHS-LGDYLAENVFDALPADLLDFLLTTSVCDRLCGDLAAAVSGQRRGQALL 307 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 EE+ER+ LFL+ +DD EWF YH LF +LR+R + + A + +HR A+ + G Sbjct: 308 EELERRDLFLRPLDDNREWFRYHHLFVGYLRRRLERDHADRVVTLHRTASAWFADHGLLG 367 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 EA+ HALAAG+ D++ A L HS +++L + LP L +L + AW Sbjct: 368 EAVTHALAAGNDAGAVDLVERQAMHLVEHSRMAVLLSLVNKLPSALLPGRSRLQIAIAWA 427 Query: 419 MQSQHRYGEVNTLLA--RAEHEIKDIRE--DTMHAEFNALRAQVAINDGNPDEAERLAKL 474 R L RA D + + E + ++A + + A L Sbjct: 428 NCLLQRAQPAQVALDHVRAALTPDDTSDTGKDILGEADVVQACIDVYGDRIYRAADLIAP 487 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 + + + V++++ V + A + ++ Sbjct: 488 YIAKNSGYRPWLVAVSSNIRTFVDIHTFAYDTAQARQRWANAFHDTTRGPFAGVYGRCFA 547 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 FAQ L TA +A L E + + +L + +D AE Sbjct: 548 GLAAFAQLDLVTAERLYREAVALAREAAGPRSHAARLAGALLGRLYYERGDIDAAERLLE 607 Query: 595 SGIE-VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 E S + + L + RG++++ L+ + + + Sbjct: 608 ECHELGAESGVADLMIATYSTLARIKTLRGEIEDVWHLLDEGSE-AASQLVLPRLSAAVD 666 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ-----GQWRNIARAQILLGEFEPAE 708 R+ GD A N L + + Q AR +++ A Sbjct: 667 HERLRLHLARGDLGRAQNVLARQSDDVARGGDGIAMATRHYQLAMRARVMAAQADYDGAL 726 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 +L ++++ + S+ + L ++ G A R L+ A+ R G + Sbjct: 727 RLLSQMHQESSSVAWRYAETATRIDLAVVHSLTGDTDTALRTLVPAVVAGARCGLVRTVT 786 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 G + + + +L + + + E +++ P Sbjct: 787 DAGPELLKIIGELRDASRC-RRWPVELPTVPSDYLSKLLATAHADAERAAIPIIDRPAER 845 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 PL RE +L L+ G SN++IA L + T+K +++++Y KLGVA R ++V Sbjct: 846 NPAPEEPLNAREIDILRLLDRGLSNKEIARNLGLTINTVKWYLKSIYTKLGVARRGESVS 905 Query: 889 HAQQ 892 A++ Sbjct: 906 EARR 909 >UniRef50_Q21ZR3 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=3 Tax=Burkholderiales RepID=Q21ZR3_RHOFD Length = 930 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 209/905 (23%), Positives = 372/905 (41%), Gaps = 44/905 (4%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG-- 60 + +K + P + V R+ L + + +L L+++PAG+GKTT + Q A G Sbjct: 52 LDNKFNPPAPMAAQVQRQGLCEAICRSA-GQLVLVSAPAGFGKTTAMVQARARLEQTGVS 110 Query: 61 --WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W +LD DN RF L AV + G + LA Sbjct: 111 TVWLTLDRADNDVSRFMICLGEAVTRLGLG--------------GPDAAAGVDSVQALAR 156 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 P L +D++ + + +R H P L++ SR+LPQLG+A LRVR L E Sbjct: 157 SDIPFALFLDEFETVHEAAVLGLVREIADHLPRGGHLIIGSRSLPQLGLARLRVRGLLTE 216 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSP-IEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 I + +L F+ Q+A F+ R + + R+ GWATAL L +++ + + Sbjct: 217 IDADRLRFSLQDALTLFEQRRQPNVLSTEQLFRLHQKTEGWATALWLASIALDRTVDQSD 276 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 R + ++DYL ++VL R FLL++++LR ++ ++ + + Sbjct: 277 FVDRF--SGSNRAVADYLAEDVLARQPTHIRRFLLRTSLLRQLDASVCAALNPRADCVAL 334 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 LE+++ + LFL + + YH LF ++LR + + E ++ +H AA+ + ++ P Sbjct: 335 LEQLDAEHLFLSPVTGARRTWRYHSLFADYLRTQLEREHPDDVARLHLAASGWYESKDRP 394 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 AI HA+ GD +L +HA + + LL ++P +P+L ++ W Sbjct: 395 VPAIDHAIEGGDFPHAMSLLDSHADAFLEQGRMRLLSRWFASMPPSQRQAHPRLEMIAIW 454 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 E +L R+ D + + A N +R + +E+ + + AL Sbjct: 455 AACFTRGPWEAMEMLERSGASASD--DPYLRANANGIRPMLLAMQDRNEESLEVGREALR 512 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 +LP G ++ + + L G+ + L+ + + +++ + + Sbjct: 513 QLPTGHQFADTTLLNAMAHNLAVMGDQREAQQLLDAARR-EQGGSSTFNRMYTESTEGLL 571 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 QG L+ A A + + A ++ +LD+AE + Sbjct: 572 DLQQGRLRQATARFRLAVDATHAISHTHTHGNALAGVYYACAVYELNQLDQAEHLLNVYL 631 Query: 598 EVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 + P + AM + + GD+D A + LE LGN + ++ A R Sbjct: 632 PITRDIGLPDHMILAHAMRSRIAFINGDVDAASLAITELE-YLGNQRKLPRVVAAAKLER 690 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG------QWRNIARAQ--ILLGEFEPAE 708 Q+ G+ AAA + L P + Q Q+ +AR + I G+ Sbjct: 691 ARMLQLQGNAAAAHDELMRADDPTLWSREQRQRMLAHDIQYMAMARLRWEIAFGDAGACL 750 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 L+ + A L LL + G A + AL+ A + GF+ + Sbjct: 751 GRLDAEKKRAAEAGRHRRLLVLRLLHALALQRTGDMPAAVTEIGTALQFACQEGFMRLIL 810 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 EG A+ +++ L+ ++ L+ + Q E E L Sbjct: 811 DEGPAVGALVQRYQSLHDSGQMRDPLLGDYLQRLLQ-AFGPLPTEIEATPELL------- 862 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 PLT++E +VL L+ GYSN +A +L V+ +T++TH+RN+ K G R AV Sbjct: 863 -GGVLEPLTRKEIRVLQLLVEGYSNSAMAEKLFVSDSTVRTHLRNINMKFGAHSRTQAVA 921 Query: 889 HAQQL 893 A++L Sbjct: 922 IARRL 926 >UniRef50_A7NKK5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Roseiflexus RepID=A7NKK5_ROSCS Length = 880 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 219/903 (24%), Positives = 363/903 (40%), Gaps = 44/903 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN---- 57 L+ +K++ P R + R RL+ +L + L+++P G+GKT + + Sbjct: 5 LLRTKIALPARHHCFIPRPRLITQLHRLIDVPATLVSAPTGFGKTMAVQEALRALATRHA 64 Query: 58 -DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 I W +LD DN +F Y+ A+ A Q A + SL A E+ Sbjct: 65 AAIAWLTLDVHDNDPVQFWRYVALALHTTLPACGATLIEALTGPQPAPVRSLLAATLNEI 124 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 L LV+DDYHLI IH+ + F I + P NL +V ++R P L + R R QL Sbjct: 125 TAQTQHLVLVLDDYHLIDLHAIHDDLTFLIEYAPPNLHIVFITRADPPLPLHRWRARGQL 184 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 LE+ + L F E + + + A E + GW AL + L+ R +T + Sbjct: 185 LEVRATDLRFDLTETTTLLNDVMRLGLSAEEIMTLLRQTEGWPAALSMAGLALRDDTAPS 244 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + + +YL DEVL R LL+ A+L +L V Sbjct: 245 PTRHIAQLAQHNRFIIEYLTDEVLAQQPAEVRALLLRIAVLERFCGSLCDAVAETTGSAA 304 Query: 297 RLEEIERQGLFLQRMDD---TGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 LE + + F+ + WF +H LFG+ LR + + ++ ++R AA A Sbjct: 305 LLETLAQTHGFIVPLPSAPNDEPWFRFHRLFGDLLRGQARCTFPEDVDALYRRAAAWHAA 364 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 G +A+ +A+A D ++ A +L +LLE L LP P+ + Sbjct: 365 HGDVEQAVEYAIAGHDFAHAAQLIERSANTLVMEGRAALLERWLHLLPDAWRQTMPRAGV 424 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 AW + + RY EV L +AE + + E +A RA +A G EA A+ Sbjct: 425 AVAWALILRGRYSEVAPYLDQAETTMLPDA-PALRGELHAARAVLAETQGRAAEALVHAR 483 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 AL+ P ++ VA + + L G++ ++A +Q + + + AL Sbjct: 484 QALDLAPADHLIAQAVAHTAIAGALRISGDIDAAIAAYEQAVPLCQAAWLRLPALLGRAH 543 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 + QG L++A + A Q +P + + +L +L++A Sbjct: 544 LGLLYLTQGRLRSAEAALKPALQSA-----IFIPAASPVFIAYSAILIERNQLEDAHQHL 598 Query: 594 RSGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 R +++ L QC L + A+GDL A+ L+ G + Sbjct: 599 RHALDLAQQSGHTAALAQCHLHLARLRRAQGDLAGAQVALDTAATFTAQG-VPAWVEPLL 657 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIV-- 710 RV + G A + L A ++ + RA++LL + A+ Sbjct: 658 IAERVRLYLDQGAITKARHALASRGTDIEAVAGAVREALP-LIRARLLLHQGRSADARAF 716 Query: 711 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 770 L+ + +A + L+L ++ A+ L AL +A G++ F+ Sbjct: 717 LDNIIASAEQSGRQGRVIEALILRTLACAALNDEAAARDDLQRALAMAEPEGYVRIFLDA 776 Query: 771 GEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPEL 830 G +A+ L ++ A R+L R + A+ E+ Sbjct: 777 GARLARLLHRIGSA---------YAGRLLEAFPSSVRARVANLTES-------------- 813 Query: 831 IRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 PLT RE VL L+ G + QIA EL V+ T++ HI++LY KL V R A+ A Sbjct: 814 --PEPLTDRERDVLRLMARGLTYRQIASELVVSVNTVRYHIKSLYSKLQVNSRTLALARA 871 Query: 891 QQL 893 +L Sbjct: 872 HEL 874 >UniRef50_Q390G0 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=6 Tax=Burkholderia cepacia complex RepID=Q390G0_BURS3 Length = 922 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 220/909 (24%), Positives = 377/909 (41%), Gaps = 33/909 (3%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGK 56 +L+ +KL+ P V R +L+ + RL L+ +PAGYGKTT++++W A Sbjct: 20 VLVRTKLA-PASARGIVSRIARFGRLARGLDRRLTLVCAPAGYGKTTVLAEWRHALVATN 78 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W SLD+ D+ F+SY++AA+ AT G + + + R L +F +L EL Sbjct: 79 VKVAWVSLDQDDDNASIFSSYVVAAIVDATGGVGGRAQRLLRDRALIPLKIVFDELLNEL 138 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 L L++DDY + +PVIH++M +R+ P NL +V+ R+ P L ++ RD+L Sbjct: 139 EVAGVELVLMLDDYDRLASPVIHDAMFELLRYAPSNLHVVLSCRSAPALPLSYFESRDEL 198 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 + + L F E + FF+ P+ A R+ GW + LQL AL+ R + +A Sbjct: 199 VRVDEDDLRFDEAETRAFFERVAGKPLSAENVGRLRAATEGWVSGLQLAALALRDDNDAA 258 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + + + ++ YL + V+ V A RHFLL +A+L M AL +TG ++ Sbjct: 259 RVAEQ--VSHARAGIAAYLNENVMTQVPDAIRHFLLCTAVLDRMTPALCDALTGRDDAVA 316 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 LE + LF++ +D + YH LF +LR+ + +HR A+ + A+ Sbjct: 317 CLEWLSAHNLFIRSVDGGRRSYRYHALFLQYLREELALRRPDAVAALHRRASTWYAAERQ 376 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +A+ HALAAGD + A L S++ + + + LP +L +L + Sbjct: 377 WPDAVRHALAAGDFDAAAGWVEACAMKLIAASDVRTVLDWVSRLPEPALAGRLRLRIAHV 436 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIR---EDTMHAEFNALRAQVAINDGNPDEAERLAK 473 W + + + L E +I R + E +R+ +A E+ L + Sbjct: 437 WALALSMQMVDARRALEAIEADIDARRLGTDAITATELLGVRSLIAGLSDRSIESLELGE 496 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 L PP + + + L G L +L L + E+ A H+ ++ Sbjct: 497 RVLAAGPPAGSWVEQIGQTTLIFGFGYAGRLDDALDLRARAERAASGHEPLFAHVYRQNM 556 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 F G L A +T E A + + + + W + + Sbjct: 557 SGLAEFVAGRLHDASKTFETALRGAERSAGRLSAATALSAGYLSAIYYEWNDWPKVREAQ 616 Query: 594 RSGIEVL-SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL-GNGKYHSDWISN 651 R ++ + L+ + G+ A L+ +++ Sbjct: 617 RDRFDIAMQACSLGPLLRFMQTAAVLQFRSGNEARAHEMLDEADHIACSRQWLRLRVACM 676 Query: 652 ANKVRVIYWQMTGDKA----AAANWLRHTAKPEFANNHFLQGQWRNIARAQILL--GEFE 705 A VR+ +A A L PE A++ Q ARA++LL E Sbjct: 677 ATGVRLHVSAGKLTQAHRVGRALAALVSAEPPEVASSFVETWQMAQSARARLLLADARAE 736 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A V+ +++ + + +L QAG++ DA VL AL+ G + Sbjct: 737 EAAGVMATVHDVLAARGFDWFAAQAAVLRAVALEQAGQEDDALAVLAPALEYGQGNGLVR 796 Query: 766 HFVIEGEAMAQQLRQ-LIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 FV EG + + L + + P + + + R +R N Sbjct: 797 TFVDEGAVAERLTARVLKRADRFPAVGAWYLRELARAFE--------------ADRASNA 842 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 L+ RE ++L + G SN++IA L VA TIK H++N+++KL V R Sbjct: 843 APAARPGTAGNLSAREVEILDYVARGLSNKEIARALRVAPETIKWHLKNIFEKLNVTSRI 902 Query: 885 DAVQHAQQL 893 AV+ L Sbjct: 903 QAVRSGLAL 911 >UniRef50_A9B3X7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B3X7_HERA2 Length = 877 Score = 537 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 209/898 (23%), Positives = 364/898 (40%), Gaps = 40/898 (4%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 +++ +KL+ P V R+ +L +L+ R++LIT+ AG GKTTL+S A + + Sbjct: 7 LVLLTKLAAPQIPSTLVERQHVLERLT--CRGRVSLITASAGSGKTTLLSSLANARQRVA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA-EW 119 W +LD DN RFA YLI A+Q + Q ++ ++ L E++ Sbjct: 65 WLTLDSNDNDAIRFARYLIVALQTLEPTLGRNAMALLNGLQQPAIEAVLTLLINEISVAQ 124 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 +P+ LV+DDYH I V+H ++ + I P L L++ SRN+P L + R + L E+ Sbjct: 125 PAPMLLVLDDYHWIDAQVVHRALAWLIDQLPAQLHLIIASRNVPPLPLGRWRGKGYLTEL 184 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L F E Q L + + + + GW +QL ALSA+ + + Sbjct: 185 DASVLQFNSAETAQLLAQTLGDLPDQSTIDWLTERTEGWVAGIQLAALSAKDR-ANVQQI 243 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT--GEENGQMR 297 +G + ++ DYL +EVLD +D AT FLL +++ + AL ++ G Sbjct: 244 LSGFSGSH-RYIFDYLAEEVLDQLDPATLEFLLATSVAERLTGALCDQLLDWQPGTGAQM 302 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L ++ LFL +DD W+ YH LF FLR R Q E + A+ A Sbjct: 303 LAQLADAQLFLVALDDERRWYRYHHLFAEFLRFRLQQLDPQAPAEFLQRASAWHAANNDL 362 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 + AI+++LAA D +++ E + L LP L ++ L L+ AW Sbjct: 363 NSAINYSLAANDHQQAANLIAQFGRDALMRGEALSVRSWLARLPAIQLSQSSHLALIAAW 422 Query: 418 LMQSQHRYGEVNTLLARAEH---EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + L +A + + +AE + A + N + + + ++ Sbjct: 423 SQLLTVDILGIEEHLQQARAHLEALPQAEQARANAEIATIEAVLLRFGDNIEHSMQHSQA 482 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 ALE + R + L G LT ++A + ++ L ++ Sbjct: 483 ALELVEHDDLVLRGILLGNLTVSARLTGNLTIAVAAASDAVAINQRSGNTFAMLLAIADL 542 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 +I QG L+ A T + +L +E+ Q+P + ++ + W +L+EA+ A Sbjct: 543 GQIQAQQGHLRKAAATYRRGIELASERGWHQVPALGLIHVGLGEVCYEWNQLEEAQIHAE 602 Query: 595 SGIEVLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 I + + + + A + ++++ + + +I+ Sbjct: 603 QAIAIAQINGYLDIATDGYRLRARVEHANNERRSSQASTEQALHFAQRNNV-GRFINEVQ 661 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 + + GD A W + K + Q A+ L+ EPA+ + Sbjct: 662 ASQARMALILGDVATVRRWAQTVQKTTW----QWQQVSAANTYARWLIANNEPAQALQLA 717 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 ++L+ + LL L Y AQ L AL ++ + G + F+ G Sbjct: 718 QPLLEQTLKFGGNRLEWLLTLALAYAAQHNLKPAQTQLEQALAISEQEGALRTFIDAGAG 777 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 +AQ LR+ + + Sbjct: 778 LAQLLREGTSYAAQRAAIVAAMLQQSSTSSAA------------------------QSLN 813 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 PL++RE +VL L+ G+SN +IA L +A T+K H+ NL KL R +AV A+ Sbjct: 814 EPLSEREIEVLKLLALGHSNAEIAERLVIAIGTVKRHVNNLLGKLNARSRTEAVAIAR 871 >UniRef50_C6PN74 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN74_9CLOT Length = 882 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 179/912 (19%), Positives = 376/912 (41%), Gaps = 63/912 (6%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK---NDIG 60 +K P + ++RE++L KL A N +L +I++PAG GKTT + W + N+I Sbjct: 9 KTKFVIPKKKCKIILREKVLKKLDEALNTKLTIISAPAGSGKTTSVISWIYSRKLENNII 68 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLDE D++ + F S I A+++ + + + Q + S+ + ++ + Sbjct: 69 WISLDERDDKLDVFWSSFITAIEKFKDSKDE--KNNFEDNQEIPIESIVDVVLNSISSIN 126 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 L VIDD+H + + I ++ FI +N+ +++ SR+ + ++ LR+ ++ E+ Sbjct: 127 DNLVFVIDDFHFVKDKDILMEIKHFIDGIFDNVHIIITSRSKTNINVSKLRLDGEVTEVD 186 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 + L F+ +E +F + + I R+ + GW +Q+ ALS + Sbjct: 187 MRDLNFSLKETTEFLNENMEIRISKESIKRLNEATEGWIAGIQIAALSMNGRKDISE--I 244 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 N ++ DY +E+L + + FLLK+ IL +N L V ++N Q LEE Sbjct: 245 EEKFSGNNEYIQDYFCEEILSDKSEEIKEFLLKTCILDELNADLCNAVICKKNSQQILEE 304 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 + +F+ ++D G++F YH LF FL + E+ E+ AA + G + A Sbjct: 305 LCDMNMFIDKLDYDGKYFRYHKLFREFLMSKLNGINKEEVSEVSNRAASWYEKNGCVNSA 364 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 ++ + + ++ + +E + LK++P D +++NP+ + + Sbjct: 365 VNQYIHVENYEQAIKLIEDKCVKKIFTNEYFYVLGWLKSMPQDIIIKNPRFCM----VHM 420 Query: 421 SQHRYGEVN--TLLARAEHEIKDIREDTMHAEFNALRAQV----AINDGNPDEAERLAKL 474 + Y ++N L E +++ ++ E ++ + + + +++ + + Sbjct: 421 CTYIYDDINYCKYLEFTEKALENYEDENYKKECTSILSIIKGDKSFIKSEYEKSIKYYEN 480 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 ALE L + + LG V + + +++ + L + Sbjct: 481 ALEYL-EKDIFWHTIINLKLGIVNFYLKKFDLEKKYFHEALILSQSYGDDILYLSASRII 539 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 + G L + L++ A + + +++AE Sbjct: 540 IFVKLLTGELIQCENMCNTCLGSNINEELKKSSHISIFYIALALVYYEKNDINKAEEYML 599 Query: 595 SGIEVLSSYQPQQ-QLQCLAMLIQCSL------ARGDLDNARSQLNRLE------NLLGN 641 G++ L + L R +L+ ++ L LL Sbjct: 600 KGLKFLEEEWDSYTAFLGYYVYSGIVLEKNPRNERNELNKLYEKIEELSQKYDDYRLLDK 659 Query: 642 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 701 +H N +++ G+ + ++ + + + +R I Sbjct: 660 YYFHK-LKDNFKVLKMRRLIECGEVNSVEKYITK-------RDFKIPEELIVFSRILIYK 711 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 + + A ++L ++ + + ++ R ++ +++ Q + +A R L +AL + Sbjct: 712 EKSDDALMLLNKILTSQNDNKYLT--IRAYIMRAEIFSQNDQYENATRDLREALIIGFEN 769 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 GFI F+ L+Q+ +L+ I +K + ++ ++ Sbjct: 770 GFIRIFL---------LKQVKANKI-----------LLKTIKSMKFNKDYYKMGEYLNKI 809 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 L+ E + +++RE +VL LI SG N +IA L + +T K+HI N++ KLGV Sbjct: 810 LSLYSTEE--NSEIISKREKEVLMLIESGAKNSEIAKALFITESTTKSHILNIFSKLGVR 867 Query: 882 HRQDAVQHAQQL 893 +R AV A+++ Sbjct: 868 NRIQAVAKAKEI 879 >UniRef50_C6D3K4 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3K4_PAESJ Length = 863 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 195/904 (21%), Positives = 368/904 (40%), Gaps = 63/904 (6%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDI 59 +L+ +K+ PV + ++RERLL L R+ + +PAG GK+TLI+QWA + Sbjct: 7 ILLKTKIRLPVVKKNLIIRERLLDSLEQGMQGRMVTVCAPAGSGKSTLIAQWAQSARIQT 66 Query: 60 GWYSLDEGDNQQERFASYLIAA-VQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W SLDE DN RF Y++ A ++ + + +++ ++ L ELA Sbjct: 67 SWVSLDERDNDIARFWRYVLNAYMETGPSSLADSLSAVGALVSGSTVNAIIDTLLNELAA 126 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 H P+ LV+DDYH I IH S+ +FI + P + +++ SR A R + + Sbjct: 127 THDPIALVLDDYHHIEQAEIHNSLSYFIEYLPFHHRIIIASRGEISFDAAKWLARGERTD 186 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 IG QQL FT +E ++F +E + ++ + GW LQL ++S + Sbjct: 187 IGMQQLHFTQEETQEFCRSA-GIYLEQRHTRKLFEKTEGWIAGLQLASISLQAQQDIDRI 245 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 A + +S YL EVLD + FL ++++ M+ + + + + L Sbjct: 246 IAGF--DGSNEKVSSYLFQEVLDKLPSDVTDFLHQTSVFERMDAEVCNQAFYRSDSREML 303 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 E++ LF+ +D+ WF YH LF FL+ R + + + + H AA++++ A+G Sbjct: 304 EQLRTLNLFVIPLDNHNGWFRYHSLFAEFLKNRLRSRSSGQWLQYHHAASQAFAARGMLD 363 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 +AI HA+A + + L + EL+ L E ++A+ + + L++ QA+ Sbjct: 364 KAIDHAIAGENYKEAAERLEEYIPDALKQGELASLLERIQAV-SEHIPIPASLLIYQAFA 422 Query: 419 MQSQHRY----GEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + V L R E + + L++ + G ++ + Sbjct: 423 YMLTGQMHFSAETVEKLEKRYEQPETAAELEPLQGGMLFLQSNLLFYTGRYEQWDSFVGY 482 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 L+ + P +++ E + R+ + S Sbjct: 483 RLQGVLPEDPIFYNFNYNMI--------------------EPLVRRTAFGLKGILS---- 518 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 ++ ++ + Q ++ ++V+ ++ + W R ++ R Sbjct: 519 ----------ADTERIGQRFVSVLEQHGWGQSLINLYVVQALSEGYYEWNRQSDSLQLVR 568 Query: 595 SGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 + + Q + L + A G A ++ + K W+ Sbjct: 569 KLEQSDRARQTAGLFVPNRITLSRIHAANGQFQKAHEAIDEAIQMADQ-KGEYHWLYPLR 627 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANN-HFLQGQWRNIARAQILLGEFEPAEIVLE 712 R + A A + + + ++ AR G+ A LE Sbjct: 628 ASRAHLYAKEDKLAEAKSEISKLRMSDRIQPASNRWIEYTVYARILTAQGKTTEALKQLE 687 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 + + + ++ + +Q G + +A +L +AL + G+I FV EG Sbjct: 688 FIKSSLEQDHCLLVRTEISIVQSLAEYQRGNRGEAMHILHEALVIGETNGYIRSFVDEGI 747 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFA-HFDENFVERL--LNHPEVPE 829 M + L Q ++ LRE +Q + + + + +E + L +P P+ Sbjct: 748 PMKRLL-------------QMYTEQRLREADQDAWQRVSLDYVKGLLEYIPELENPSQPQ 794 Query: 830 LIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 PLT++E +L L+ G N+QIA +L + T+K ++ +Y KLGV+ R A+ Sbjct: 795 PALIEPLTEQETFILRLLGQGAPNKQIAAKLALKEGTVKVYLSRIYAKLGVSSRTQALAA 854 Query: 890 AQQL 893 A+QL Sbjct: 855 ARQL 858 >UniRef50_B8KM86 Transcriptional regulator n=3 Tax=Gammaproteobacteria RepID=B8KM86_9GAMM Length = 925 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 209/906 (23%), Positives = 373/906 (41%), Gaps = 31/906 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK-NDIG 60 LI +KL +P V R+RLL K+ A + L L+++ AG GK+ +++ W + + Sbjct: 25 LIRTKLHKPPLPSDYVCRDRLLDKMDKAMDVPLTLVSAGAGTGKSVMVAAWLEDRGHPGA 84 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLD+ D RF YL+A ++ G + + + + A EL Sbjct: 85 WLSLDDSDGDLRRFLRYLVAGLESLHPGSLQDTAALLDAPELPPVAVIAAHFTNELDRST 144 Query: 121 SPLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 P LV+DDYHL+ +HE +R +++H P++ L+++SR P L + +LR ++ EI Sbjct: 145 MPQVLVLDDYHLLDPKSSVHELIRGYLKHPPQSWHLILVSRKDPPLALGSLRGAGKINEI 204 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 Q L F+ E + S + + I V GWA L+L+ L+ RQ Sbjct: 205 RQQDLPFSIAETAGLLSGSVPSGLGEKQIEAIQLRVEGWAAGLRLVGLACRQAPDIDRFI 264 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRV-------TGEE 292 A+ G N + YL+DEVL + A +L+K+A+L AL+ + T E Sbjct: 265 AQ--LGGNLPDTTAYLMDEVLTTLPAAFSGYLIKTAVLDRFCPALLDAIHPDAEPATTEM 322 Query: 293 NGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESW 351 +G +E + LF+ +D EWF YH +F L + + E+ +H A+ + Sbjct: 323 DGTRFVELLNHSNLFVVPLDANCEWFRYHHVFQQLLLDQLKQVCSPNEIHALHSNASTWF 382 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 QG EAI HA+A D DI+ H + S L+E L LP + P L Sbjct: 383 EQQGCIDEAIKHAVAT-DVQAAADIVERHRNEPLRNDRWSELQEWLDMLPASIKMSRPSL 441 Query: 412 VLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERL 471 +L WL + + +L + D+ + AE N + VA +G E+ R Sbjct: 442 LLCHGWLASFRLEIDVMAVILQTLDGLEVDLANPILVAEKNFFSSVVAYWEGRFAESLRF 501 Query: 472 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 ++ A+ P + + L G ++L+ ++ +A + + + Sbjct: 502 SEAAIAVNPGAADMAAGESHLYRALSLQVTGHTRQALSQLRAELNIAPKGSEPYQT-RLV 560 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 S + G L+ A E + + L + + A R + Sbjct: 561 AALSFVHLLNGDLELAHEHGRQTVTVAIRNKLPHPKLWGEFICGVASFC--AGRFRQTSD 618 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 + + + + C GD +A + + K + I+ Sbjct: 619 ILSHCTDSAYIFDIRAACDAYVGVALCHQFNGDNASAEKLMAEGIAYAEDVKG-PEAIAV 677 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL-----GEFEP 706 + + G+ AA W R + + I + ++L+ E E Sbjct: 678 VASAQARLQLLQGNAKAALRWARRESDEANPVEMLFWIEVPKINKYRVLITAGTKTECEK 737 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 + + +L ++L + + + +L + GR+++A+ VL++ L+L ++ Sbjct: 738 SLGDVVQLRTQLQALHMKNHIIPVAVLQALGLAKLGRENEARTVLIECLELGGEAEWMQP 797 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 FV GE + L + + E Q + + R K + P Sbjct: 798 FVEAGEPLIGMLEGISKTGHHREFIQSVLSAYDQYVAAASRGKGTG---------VATPH 848 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 VP+ + + LT RE +L L+ N+QI L ++ T+K H++++YQKL V++R+DA Sbjct: 849 VPDHVGLTDLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDA 908 Query: 887 VQHAQQ 892 + A + Sbjct: 909 IAKATR 914 >UniRef50_B1KGF0 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KGF0_SHEWM Length = 896 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 204/926 (22%), Positives = 370/926 (39%), Gaps = 83/926 (8%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-----AAGKN 57 + K P + R RLL LS A L SPAGYGK+TL+SQ+ G Sbjct: 10 LLQKFKPPQQQVKLSQRTRLLKLLSQAEAKSLITAVSPAGYGKSTLLSQYVEMLNQQGNA 69 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W ++D DN+ +F + A+ + S F + L Sbjct: 70 QVIWIAIDPSDNEPNKFFNIFSHALVHHNIADKQLINRSNSISANTDYDSFFIDIVGILH 129 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 E P+YL IDD+H +++ VI +++ P+ L L++ SR P+L IANL Q+ Sbjct: 130 EVKHPIYLFIDDFHFLSDKVILHFFNQILQYAPQQLQLIISSRIQPRLEIANLLASGQMQ 189 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + + + EA Q + + +E + D GW A+QLIA+ +Q+ A Sbjct: 190 MLQPEHFKLSIDEAFQLYSDQF----SQSEITAFHDKTEGWVVAMQLIAIFHQQHPELAL 245 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 S L + L Y+ +++ +D +HFLL +++L + + V +N Sbjct: 246 TS---LLNQSIDILDLYMSEQIYHKLDANVQHFLLHTSLLDRFDPLIANYVCEIDNSTQL 302 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAEL-PEIHRAAAESWMAQGF 356 + +I + +D +F YH LF +FL+QR E+ + E+ AA+ + + Sbjct: 303 MSQIIPFSSLVIPIDSQQGFFRYHHLFADFLKQRLLQEVGEQTCRELRCKAAKYYANNDY 362 Query: 357 PSEAIHHALAAGDALMLRDILL-NHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 EA++ + A ++ W L + +E L + +P L L+Q Sbjct: 363 FEEAVNQYIRANHIESAIALIASAGGWELILTRGIGYVESLLSQFNRTQITNSPTLGLIQ 422 Query: 416 AWLMQSQHRYGEVNTLLARA-----EHEIKDIREDTMHAEFNALRAQV--AINDGNPDEA 468 +L + + A E++ +D + +F+ ++ + ++ G + Sbjct: 423 CYLYLKLGEVNQASNSYELAYTLFKEYQQQDKPSSSRSRDFSIIKMLIDLYLDRGTDNRL 482 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 LE L R V + LG + + G + + + Q + + W Sbjct: 483 INTLTELLETLEESDHLGRGVVLAGLGLIHNQLGRFEEAHSAALTSHQQMQLANCWVGIN 542 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 +++ Q + L +G L A E ++A ++ E + ++A + + ++++ Sbjct: 543 YNIFHQGQSLAYRGRLNEALELFKRASKMAKEHLGLDSGLQSMASCLKADIHYQVYQIEK 602 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAM--------------LIQCSLARGDLDNARSQLNR 634 AE SGI+VL S + ++ L Q L RG L QL R Sbjct: 603 AEELLASGIKVLESKDCWHDIYAVSFKLAINIAIARDDHNLCQHYLQRGYLVAQIRQLER 662 Query: 635 LENLLG-------NGKYHSDWIS--NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 685 LE LL + H D + N+ +R YW+ W + NH Sbjct: 663 LEKLLDVLSLKVTDKFCHLDKFNQLNSQIIRENYWE-----TPQPMWFVISEYYYVIANH 717 Query: 686 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 745 +L N A L + ++ E N+ ++ + + + G + Sbjct: 718 YLSRNMSNQA-----LSYSQKLSLLALENNQKIDQVKALGIQCLSQ-------FSTGNEK 765 Query: 746 DAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQH 805 A R++ L+LA++ G F EL H +L+ Sbjct: 766 KAFRLVTQMLELASQVGCKQVFF--------------------ELPNHIEALLLKLNLHS 805 Query: 806 HRHKFAHFDENFVERLLNHPEVPELIRTSP--LTQREWQVLGLIYSGYSNEQIAGELEVA 863 ++ + + L++ + + +P L+ RE Q+ L+ G++N+QI+ L ++ Sbjct: 806 DENQLSSEGNRLLTWLISELKKSHQAQNNPWHLSSREQQICPLLSQGFTNKQISTTLGIS 865 Query: 864 ATTIKTHIRNLYQKLGVAHRQDAVQH 889 T+K H++NL+QKLGV +RQ AV Sbjct: 866 ENTVKFHLKNLFQKLGVINRQQAVLA 891 >UniRef50_Q1D1L7 Transcriptional regulator, LuxR family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D1L7_MYXXD Length = 902 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 212/917 (23%), Positives = 375/917 (40%), Gaps = 50/917 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW---AAGKND 58 L+P+KLS P V L ++ + +L L+T+P G GKTTL++QW A + Sbjct: 12 LLPTKLSPPRAASVLVPCGAALRRIDHGVSGKLVLVTAPLGSGKTTLLTQWYREARVPHL 71 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 + W SLDE DN ERF +YL+ A+++A A + + L SL++ Sbjct: 72 LAWLSLDEQDNAPERFFAYLVGAIRRAAPDFDAYSTSQPEHATAVILQSLWS-------- 123 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 L +V+DD+H++ + + + + H P ++ VV SRN+P+L +A L++ +QL+ Sbjct: 124 LGRELVVVLDDFHVLRERPLVRAFSYLLDHSPPHVHWVVSSRNIPELDLAKLKLTEQLVT 183 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + + L + ++ + + + + GW ++L LSA H++ Sbjct: 184 LDGRDLNLDGEAIRELGLRLCGAVLTPEDIDSLRTRTEGWVAGVKLALLSA--GEHASVS 241 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 A R A + ++ YL D VL R FL+ S+++ ++ AL + G G L Sbjct: 242 DALRKAIGSNHDVARYLADAVLREQPEEVREFLVLSSVVEQLHGALCNALLGITRGHTLL 301 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 ++ER LF+Q +D +W+ YHPLF + LR + + A +P +HRAA+ + P Sbjct: 302 GQLERSQLFIQALDTERQWYRYHPLFLDVLRAQLACDYADRIPRLHRAASAWFAENQMPD 361 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 EA+ HA A+ D + + EL+ + L ++ +P + + Sbjct: 362 EALTHAFASEDRDWCLALTARCMEAWMREGELASVLHWTAKLTAQEVIRSPAICVGHIAC 421 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVA--------INDGNPDEAER 470 + R+ L A+H + D ++ E L ++A ++D PD Sbjct: 422 LILSRRFAHATAALRDAQHHL-DTADEVSAPERERLTKRLAHLTLLHAVLSDSAPDTGMD 480 Query: 471 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 L A + + L + + H+ ++ Sbjct: 481 LD--ASPGSEESDVFIAGAVLAAKAYRALRMNRFDAMRRLALSARETLQGHNNPFLVGYT 538 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 + + AQG ++ A E+AF+ + + P+ A + RLDEAE Sbjct: 539 DVLVALADRAQGNMKDAAARCEEAFERASR--GRRNPVWANAATALANARYEQNRLDEAE 596 Query: 591 ASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 A + +L + ML + RG A L+ L +L G + + ++ Sbjct: 597 ALCVEVLPLLPQASVFETFALAYLMLARIKTVRGKYAEAYRLLDYLHGVLECG-HQTRFL 655 Query: 650 SNA--NKVRVIYWQMTGDK----AAAANWLRHTAKPEFANNHFLQGQWRNIARAQ----I 699 ++ K+R+ + + A + E++ F W + AQ + Sbjct: 656 AHVCGEKIRLYLVEQAPARMRVVAQEFGLGERMRRGEWSEKRFYDETWERLGLAQAWVLM 715 Query: 700 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 759 G + A +LE L +A + +S L + +W+AG A L LA Sbjct: 716 ARGRHDKAHAILEVLRASAHEVGYVSRETALLATIAVCHWRAGDAMAAFAALNRGFALAQ 775 Query: 760 RTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE 819 R GF E + + + + L R +++ Sbjct: 776 RFGFGRSVFDETPGLQEVVIAAARQRKLSYAFPDRYATRYQDLLSAG------------T 823 Query: 820 RLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 R+ P PLT+RE Q+L L+ G SN++I+ VA +T K H+RN++ KL Sbjct: 824 RVPREFAAPPSAPLEPLTERELQMLKLLAQGLSNQEISERSNVALSTTKWHLRNVFAKLD 883 Query: 880 VAHRQDAVQHAQQLLKM 896 V R A+ AQ+ L+ Sbjct: 884 VTTRTAAIVKAQERLQR 900 >UniRef50_C8XKI9 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XKI9_NAKMY Length = 897 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 214/903 (23%), Positives = 356/903 (39%), Gaps = 48/903 (5%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-----AAGKN 57 I +K+ P R V R RL+ ++ + RL L+++PAG+GKTTL+S W AAG+ Sbjct: 6 IATKMVVPSRRPALVDRPRLIERVRRGSRSRLTLVSAPAGFGKTTLLSAWLAENGAAGQR 65 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLD GD F +YL A++ A + + + + L +LA Sbjct: 66 RVAWLSLDAGDRDPAVFWTYLATALRSAVPEVGSQTLELTAVDPL-PIELVVTTLLNQLA 124 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 ++LV+DDYHL+ I M + + P ++ LV+ +R P L +A RVR +L+ Sbjct: 125 AAEGEIWLVLDDYHLVDGSDIGTGMTRLLDNLPAHVHLVISTRADPDLALARWRVRRELV 184 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI + L FT +EA + + + + + GW ALQL ALS + A Sbjct: 185 EIRAADLRFTVEEATDYLTQVAGLDLAGSAVAALEQRTEGWIAALQLAALSLQGRGDVAA 244 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 R + DYLV+EVL + R FLL++A+L + L +TG +G+ Sbjct: 245 FIDRFTG--TDRFVVDYLVEEVLAHQPPDVRDFLLQTAVLDELTGPLCDALTGRRDGERT 302 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L +ER LFL +DD EWF YH LF + LR R E ++ +HR A+ + Q P Sbjct: 303 LVALERANLFLVPLDDRREWFRYHHLFADVLRARLLSERPDQVTRLHRQASNWFDQQDRP 362 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 +AI HALA G+ D++ +L + + L + L ALP +++ P L +L Sbjct: 363 EDAIRHALAVGEVDRAADLIERALPALRRNRQDRQLRDWLTALPDETVRARPVLSVLVGH 422 Query: 418 LMQSQHRYGEVNTLLARAEHEI--------KDIREDTMHAEFNALRAQVAINDGNPDEAE 469 L+ + V L AE + T+ A RA VA G+ Sbjct: 423 LLLASGDLAAVQARLDDAERALTTGTAGHGGSAELRTLPATIAVFRASVAQARGDEPATA 482 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 A+ AL P +R A LG +G++ +L+ +Q L Sbjct: 483 AHARRALALAGPDDHLARGAAAGFLGLAAWARGDVRSALSTFEQAVTSLHAAGAVVDELS 542 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + +++ A G A E A + ++ +++ + A Sbjct: 543 GTVILADLWSAAGRPGRARELYRDALRDAAAHRPAAARAEAEMLVGLSEIDCTAGDVTSA 602 Query: 590 EASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 + E+ + + + + + A G A L + L G + + Sbjct: 603 QQQLELADELSRGRPTTESRYRWFVARARVADATGAPAEALQLLTEAQRLYQPGYFPA-- 660 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI--------L 700 + ++ GD W + A + A+ ++++ ++ Sbjct: 661 VRPIPAIQARVRIRAGDLGPVMQWAQQPAVAD-ADEDAYLHAYQHLTVVRLRLAQARAGA 719 Query: 701 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA-N 759 G + LE + + A++ DL LL + G + A R L A A Sbjct: 720 AGALDGTAERLERMAQAAQAAGRDGDLLEIHLLQALVRQARGDRPGAARALARAWAAAPE 779 Query: 760 RTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE 819 + F+ EGE + LR L + + Sbjct: 780 PDEYARLFLDEGEPVFDLLRDAATQTELAGPARRLLELGADPGRPPAPGTAGPL------ 833 Query: 820 RLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 L+ RE +VL L+ S + +IA L V+ T++TH ++++ KL Sbjct: 834 -------------AVELSPREREVLRLLDSELTGPEIARTLFVSHNTLRTHTKHIFTKLD 880 Query: 880 VAH 882 V Sbjct: 881 VTS 883 >UniRef50_Q1N117 Probable transcriptional regulator n=1 Tax=Bermanella marisrubri RepID=Q1N117_9GAMM Length = 897 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 192/908 (21%), Positives = 363/908 (39%), Gaps = 50/908 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND--- 58 ++ K+ P V R L+ L + L+ + AGYGK+ + S++ K Sbjct: 19 VLAMKMQLPSLPLAHVKRTSLIQYLDS-QESNVVLVYAAAGYGKSLMFSEYMFSKKHIQE 77 Query: 59 -IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLD +N + RF +YL+A + + + + ++F + +A Sbjct: 78 SVAWLSLDAKENDERRFLTYLLACLHGV--DDQIFNQALEKLLGGEDCEAVFLNIVDAIA 135 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + ++LV+DD H I N + + + + + PENL L +LSR ++ LR + ++ Sbjct: 136 QLQRKIHLVLDDCHEIRNEKVLDWIETLVLYTPENLRLYLLSRVCLPFSLSKLRHTNGVV 195 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI +LAFT E + +F+ + +E + GW L ++ Q Sbjct: 196 EITENELAFTSDEMQLWFEQAQLVRLNRSEQEQFHSISQGWPVGLTMLKALYDQFEEIDL 255 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 L + +Y ++ ++ + + A+L+ ++ + ++ Q Sbjct: 256 SRPNTL-------MQEYFHEQWRPHLSNSQYELCRQIALLKEVSPEYLLAAYQDDAIQDE 308 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L + + + W C HP+ +L QW+ + +++ A + GF Sbjct: 309 LTNLLNSHKLVMPVAIYQTWVCLHPMLQAYL----QWQGLESVKTVYQQACDWLHDNGFQ 364 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 A+ AL A D L +L A S+ +++ L E + +P D ++ +P+LV++ +W Sbjct: 365 VAAVEMALKAEDKLKAASLLQQTAESILEDQDIAQLLEWRRQIPDDVIIASPRLVIIFSW 424 Query: 418 LMQSQHRYGEVNTLLARAEH--EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 + + + L+A+ + D + + A+RA +A GN D A LA A Sbjct: 425 SLALALQLDDSERLMAQMARIEGVPGTMTDEISGQLFAIRAYIARCRGNIDNAASLAHQA 484 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 LE+LP F +R V L V + L + + + + AR H + ++ + + Sbjct: 485 LEKLPKRNFVARAVTYFNLSNVCMTQQSLVDARKYNRLSFETARAAGSIHLEMLAIHEHA 544 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQL-PMHEFLVRIRAQLLWAWARLDEAEASAR 594 + +G L A + ++ L + + P + L+ + +L + +A Sbjct: 545 RLEQVKGNLNLAIKLLDEGLHLSHRLDNRMMAPAYGRLLIYKGYMLLLQNQTAQARQLLL 604 Query: 595 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD-WISNAN 653 G+ V + + + Q GD++ A L E + S ++ + Sbjct: 605 KGLGVCKATHDSYVIMAFVLKSQLFRQSGDIEKAFDYLAEAEAQMQRWNIPSFIYMPWLS 664 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW---------RNIARAQILLGEF 704 VR G A + ++ + + L + RA+ + G+ Sbjct: 665 TVRCNLLIDQGKVDVALSNIKDLYQQAELAPYLLTPEHFPALKGLLDIFYVRAKSIAGQH 724 Query: 705 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 764 + A +L++ E+ + + L L+ L +Q G + DA AL +A I Sbjct: 725 KDALRLLDQTLESGKLEQHGFTLLFIYLMRALLRYQLGHEDDALHDFRKALTMAEPDECI 784 Query: 765 SHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 F+ M Q +QL + Q IL+ I A ++ F + L Sbjct: 785 MPFIEYSAGMGQLYQQLPDQYK----HKPFVQAILKNIELTED---ASPNKEFAKMRL-- 835 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 L+QRE VL LI G SN++IA L ++ T+KTH R + KL V R Sbjct: 836 ----------VLSQREMAVLKLIAEGLSNQEIAERLFISLHTVKTHARRINGKLDVKSRT 885 Query: 885 DAVQHAQQ 892 A+ A++ Sbjct: 886 QAILKAKE 893 >UniRef50_C8SFS0 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SFS0_9RHIZ Length = 871 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 219/878 (24%), Positives = 349/878 (39%), Gaps = 40/878 (4%) Query: 33 RLALITSPAGYGKTTLISQWAAGKND----IGWYSLDEGDNQQERFASYLIAAVQQATNG 88 R+ L +PAG+GK+T ++QWAA W S + DN + F S+L+ A++ Sbjct: 2 RIVLFAAPAGFGKSTTMAQWAAELARHGRLTAWLSCEATDNDEGAFLSHLVGALRHLVQ- 60 Query: 89 HCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRH 148 + A + Q L + + L A + + L DDYH+I + M R Sbjct: 61 NPAELDLAFQSSPIPQLEVVLSALVAGFAARDAEITLFFDDYHVIETEAVKRFMERLTRQ 120 Query: 149 QPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAES 208 P N+ V+ SRNLP L + LRV + EIG L F EA+ FF+ +L + + Sbjct: 121 APANVAFVIGSRNLPDLQLGKLRVLGDVFEIGPDDLRFVSSEAEAFFNDKLGLSVSSGTV 180 Query: 209 SRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATR 268 +C GWA LQL +LS H+ G N +++D+L+ EV + A Sbjct: 181 EALCSRTEGWAAGLQLASLSL-SAAHAPETVIGNFTGAN-RNVADFLMGEVFLGLPPALA 238 Query: 269 HFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFL 328 FLL S+I + + V + + + EIE + LFL +D+ WF YH LF +FL Sbjct: 239 KFLLHSSIFQRFSAEACRAVLRVADAEADIAEIETRNLFLVPLDEERRWFRYHHLFRDFL 298 Query: 329 RQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHS 388 + + + +H AAAE + + +EAI HALAAGD + N+A L Sbjct: 299 IREMERRAPEMIAPLHLAAAEWFGERKMLTEAIGHALAAGDQARAAVFIENNALELIAQC 358 Query: 389 ELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIRED--- 445 +L + + L LP + + +L L+ WL + LA A I+ D Sbjct: 359 QLLYVRQLLALLPRKLVDQRIRLQLVVLWLAVHSSQPEIAQQTLANARKLIETGPTDGKD 418 Query: 446 -------TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL 498 T+ AE L A V ++A A AL + P ++ +V+G L Sbjct: 419 PGTLTGTTIEAEIAVLDAAVHSTLERFEDARDTALAALRVIAPDAWFMEGATANVIGYNL 478 Query: 499 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 558 + G+L + A + + + + I + G L A Sbjct: 479 YALGDLEGARAAADAARKAHERSGSLLGVTIANCYMAVIERSAGRLPAAERLLRNTIIEA 538 Query: 559 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS-SYQPQQQLQCLAMLIQ 617 + + A+L + EA + ++ + L + + Sbjct: 539 RTRIGANSYAEALAGTLLAELAYETNASGEALTLVENLGPLIEGAAVIVYPLASVPTYAR 598 Query: 618 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 677 G D A L R+ G + S R+ A L Sbjct: 599 VLQLTGRADAALDMLERV-YQRVRGSVYRRLASVLVHDRIRLLLDQNRIVEARALLSEHR 657 Query: 678 KPEFANNHFLQGQWRNIARAQILLGE--FEPAEIVLEELNENARSLRLMSDLNRNLLLLN 735 + + ++ A ++L E A + + L E ++ M L+L Sbjct: 658 RESAETEPTVANEFEFFAEGRLLTAEKSHAAAAAIFDALLERTKNSGRMRRHILALILRA 717 Query: 736 QLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQL--IQLNTLPELEQH 793 + + + R LL+AL+LA +GFI FV EG + + L +L Q T P L + Sbjct: 718 KTTVH--DQRETDRHLLEALRLAQPSGFIRSFVDEGRPVVEGLMRLRAAQAKTDPALSAY 775 Query: 794 RAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSN 853 A+ I D + LTQRE ++L + G SN Sbjct: 776 AARII---------------DAAQTMPVATRKPAAPTADKEQLTQRETELLRCLSEGMSN 820 Query: 854 EQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 IAG L V+ TT+K H++N++ KL V++R AV+ AQ Sbjct: 821 RDIAGALSVSETTVKWHLKNIFGKLSVSNRVQAVRAAQ 858 >UniRef50_Q1LAZ5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=5 Tax=cellular organisms RepID=Q1LAZ5_RALME Length = 914 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 225/910 (24%), Positives = 366/910 (40%), Gaps = 30/910 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKN 57 L+ SKL P L + +VR RL+ + A + RL L+ + AG+GKTTL+ Q+ AG+ Sbjct: 19 LVASKLVPPRALPNHLVRSRLVDVMVDAASARLILVRAAAGFGKTTLMQQYLERCQAGQR 78 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 W D DN +RF +L + + + +R A IE+A Sbjct: 79 ACVWLRCDAADNDLQRFLLHLHTGLLRLP----GLTRHQRDERSDTIAGETIAHEIIEIA 134 Query: 118 EW-HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 P +++DD +I N I E ++ +R LV+ +R P LG+ LR R QL Sbjct: 135 ASYAHPFAILLDDLEVIQNDAITEYLQQLVRVLSPQGVLVIGTRATPDLGLGGLRARGQL 194 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 L+I L F+ +EA F + P+ E + + GWA A+ L LS R H Sbjct: 195 LDINPAALRFSAEEAASFIRDKCGLPLPDGEIATLWRCTEGWAAAVYLATLSLR--GHPN 252 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 H + R L++YL +++L + R FLL++++L ++ L VTG + + Sbjct: 253 HAAFVRSFSGTNIELAEYLAEDILMGQSESCRDFLLQTSLLGQLSAPLCDAVTGRHDSRE 312 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L +ER LF+ +D +W+ YH LF +FL+ R Q + +H AA+ ++++ Sbjct: 313 MLSFLERNNLFITPLDGEHQWYRYHSLFASFLQHRLQVTYPDKARALHVAASRWYLSEDR 372 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP-QLVLLQ 415 P AI H L AG ++ H +LF + LL L + LL +P ++ L Sbjct: 373 PVPAIEHLLQAGLDDEALPLIAIHTPALFQAGRVRLLARWLDRIDRKRLLADPHRMGLAY 432 Query: 416 AWLMQSQHRYGEV-NTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 AW++ RY E T+ A ++ ++ + E LR + + Sbjct: 433 AWVLLLNRRYSEAMQTMAALLAADVPADQQAKIAFEVETLRCVLLAMTDQIEACLAAGLA 492 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 LE +PP + + L + ++ + A + + Sbjct: 493 HLERIPPDAPFRYASVVNSQAFSLVASHRYEDARRVLSRLMPGANDVRTGFQRGIADSLE 552 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 I QG L A + H FL A L+ L++ Sbjct: 553 GVIDLVQGRLSNALARFRAVAERGWSPSEVSSLRHAFL-PAWATALYEANALEDCARVLA 611 Query: 595 SGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 + Y P + + + +L GD D L LE + G G I +A Sbjct: 612 EAMPYCKGYAPPDAMIAGFILSARLALLGGDRDRWLRMLAELEEI-GRGIQLPRAICSAW 670 Query: 654 KVRVIYWQMTGDKAAAANWLRH-------TAKPEFANNHFLQGQWRNIARAQILLGEFEP 706 RV + G AA LR A + + + + R I GE E Sbjct: 671 LERVRVATIEGRLDAADQALRSAELHADWAASDSYGHANDIDFPDSIGWRLAIAHGEHEQ 730 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 L + A + + LLL AGR+S+A L +A++LA+ G + Sbjct: 731 TASELADAIAVATQRQRHWRALKLRLLLAMALDGAGRQSEAFEPLTEAMRLASHEGLVRT 790 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 FV EG+ +A LR+ + + +R + A E + Sbjct: 791 FVDEGDRLADLLRRWADAREAEIVRAGIDLQFVRTVLAQIPTPLAVAGEEVNK------- 843 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 PLT RE +VL ++ +G+ N IA ++ V+ TIK+H+R + KLG R +A Sbjct: 844 ARGAAIAEPLTTREQEVLQMLAAGHRNRVIAEKMFVSELTIKSHLRKINAKLGAQSRTEA 903 Query: 887 VQHAQQLLKM 896 V + L + Sbjct: 904 VAIGRSLGLL 913 >UniRef50_UPI000178942B ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178942B Length = 865 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 196/901 (21%), Positives = 353/901 (39%), Gaps = 64/901 (7%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-- 58 +++ +KL P D + R + + + +R+ I +PAG GKTT + Q+ + Sbjct: 6 VILRTKLQPPALRDSWISRSVWDVRENQGSGYRIITIVAPAGSGKTTALVQYMHHEGQHR 65 Query: 59 -IGWYSLDEGDNQQERFASYLIAAVQQ-ATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 W +LDE DN RF Y+I ++ +G + + S Q +E+ Sbjct: 66 LASWLTLDEQDNDLRRFWRYMIHSLLPNLPSGIENRLLPLLVPYSGQVIYSFLDQFIMEM 125 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRVRDQ 175 + +V+DDYH IT+ IHES+ ++I H P+++ + + SR L G+ + + Sbjct: 126 HGISLSINVVLDDYHSITHQEIHESLNYWIEHLPDSVRVFIASRAELPLEGMGRWLLSGR 185 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 L IG+Q+LAF ++A L + + + + GWA LQL ++ RQN + Sbjct: 186 LQRIGAQELAFNEEDAGSLCQHTLGRSLAPEKLNSLVRRTEGWAAGLQLALIAQRQNEAA 245 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + + N LSDYL EV+ +D R FLL+++++R + + VT Sbjct: 246 GIPGSDAFSQSN-RQLSDYLSHEVMRGLDKPLRQFLLETSVMRRFHADICAAVTELPQCD 304 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 LE ++ +GLFL +D W YH +FG+FL + + E++R A++ + +G Sbjct: 305 GMLEVLKAKGLFLIPLDHQERWHRYHHVFGDFLSSLLKQQNPERWIELNRRASQVYAREG 364 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 + EAI +AL A D M ++ H L E LL+ L P L + +L+ ++ Sbjct: 365 WHEEAIDYALLAEDYEMAAALVDQHMMELIKKGEFDLLQLWLNRFPEGIRLPD-RLLFVK 423 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDI----REDTMHAEFNALRAQVAINDGNPDEAERL 471 ++ + + LL R E + + R+ + ++A +A N DE + Sbjct: 424 IFVYSLLGKRDQARDLLERLEAGLYGLPIMERQLEWLSGLFFVKANLAFNSRQFDEWFQF 483 Query: 472 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 A+ LP + + + L Sbjct: 484 AQTIEHRLPEDPIFFN---------------------------FNYNNREPFVRNTPFGL 516 Query: 532 IQQSEILFAQGFL-QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 QG L T + + ++ E M +++++ A+ + LD Sbjct: 517 ---------QGVLTNTTAQVGTQIVSILERHGWEDSLMCQYVMQAMAEGFYEKNELDACV 567 Query: 591 ASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 +E P + + + G+ +AR+ + N++ + W Sbjct: 568 FWLDRLLEGRRYKDVPGLFIPIRLTMAKLKRKEGNHHSARAIVQDALNIME-AREDILWC 626 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-LQGQWRNIARAQILLGEFEPAE 708 S V G+ + A + + AR I + A+ Sbjct: 627 SALRAFLVEIDLRDGELSQAEAGFQELNLSSMQRISLEYSLEIMTWARLLIHQQRADQAQ 686 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 +L L A ++ ++L + G A L +AL L + F+ Sbjct: 687 AMLAALRIQAEEAGSINITASVIVLQAYAEYTRGNVKVATLFLQEALSLVMPYRYKRTFM 746 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 EG + Q L++L + + A E + L ++ Sbjct: 747 DEGNWVYQLLQELNTNGDAMK-------------TAPLKDYMAELMEEMRQEKLASLDLL 793 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 + T LT +E VL L++ G +N+ IA EL + T+K ++ +Y KLGV+ R AV Sbjct: 794 DHFGTYGLTPQETTVLALLHRGDTNQSIADELGLTVGTVKVYLNRIYSKLGVSSRVQAVL 853 Query: 889 H 889 Sbjct: 854 K 854 >UniRef50_UPI0001789493 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789493 Length = 873 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 209/911 (22%), Positives = 368/911 (40%), Gaps = 64/911 (7%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIG 60 ++ K+S P +H + R+RLL ++ + +L I +PAGYGK+TL++QWA + Sbjct: 9 ILKMKISLPGLKEHLIRRDRLLQDMAAGHKGQLTTIIAPAGYGKSTLLAQWAHETDERSA 68 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATN-GHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLDE DN RF Y+ A++ A Q AS+ + L EL E Sbjct: 69 WVSLDERDNDPVRFWRYVAASLASILPEAQGARLMHHTQLLPSASIETFLDTLISELYED 128 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 PL L+++D H I + IH + + I + PE++ L++ SR V ++ I Sbjct: 129 SEPLNLILEDLHSIHSSTIHGGISYLIDYLPEHIHLLISSRTELPFPTIKGVVNHEVYLI 188 Query: 180 GSQQLAFTHQEAKQFFDCRLS---SPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 G +QL FT++E ++ F + S + + E + + GW T LQL ++ R T S Sbjct: 189 GMKQLEFTYEETERLFRHASNGGHSNLTSMELDTLRNQTEGWVTGLQLAVITMR--TGSG 246 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + N +S YL EV+ + FLL++A+L ++ + VT + + Sbjct: 247 LEGFVDDMKGNPLLVSKYLFQEVVSKLSPDVFSFLLQTAVLSELHPQVCDAVTDLSDSRP 306 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 LEE+++ LFL +D+ +F YH LF FL Q E E + HR A + + + G Sbjct: 307 MLEELQKLNLFLVPLDEHQTFFRYHHLFSQFLLDLLQREFDGEYTKRHRLAGQYYASVGS 366 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 EAI H LAA D ++L H S+ E++ L + + + P++ L A Sbjct: 367 MDEAIDHMLAAQDFGHAVNLLEQHMQSVLELGEIATLLKWFDRIHPSYPMT-PEMSLAHA 425 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDI----REDTMHAEFNALRAQVAINDGNPDEAERLA 472 +++ +L E + R + + + +R+ + +G+ + + Sbjct: 426 FVLVLTGDLERSERMLILIEEACAALESSERREQLMSSILFVRSNLVFLNGDFGKWFAFS 485 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + L+ L P ++ + + R +++T Sbjct: 486 EGILDNLMPDNP-------------MYYQFDYNRREPYVRRT------------------ 514 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR-IRAQLLWAWARLDEAEA 591 L +G L E F + E H + V+ + + W RL E Sbjct: 515 ----SLGMKGTLSADTERIAHLFTGVLESHGWAHSLMNLYVKQSLCEGYYEWNRLAE--- 567 Query: 592 SARSGIEVLSSYQPQQQ-----LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 646 R + + + P ++ + + A G A L+ + S Sbjct: 568 -CRQLLVQIRNAPPAKETMGLFVPLHITEARLFAAEGKFHLAHYALDEA-CSAALARKSS 625 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN-HFLQGQWRNIARAQILLGEFE 705 W++ VR + + G A A + + + ++ + R Sbjct: 626 LWLAPLKAVRSLIYIREGRIAEARKEVAELPVSVKDKPAYSRETEYLALVRMLGRQRRET 685 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A +LE L A + S + L L Q G++ + +L +AL++ + G++ Sbjct: 686 EALRLLELLKPQAEREQQRSSIIEITSLQALLEHQRGQRQQSLHLLGEALRVGAQNGYVR 745 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 F+ EGE M Q L+ + R L + + E ++ Sbjct: 746 TFLDEGEDMCQLLQLYSSRLGQEDGLSLEELRTLE-----YARTLVKRFPGYSEADISSA 800 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 E P+ L + E +L LI G +N+Q+A L ++ TI+ ++ LY KLGV R Sbjct: 801 ETPQQTLPERLNRNEMNLLHLIRQGAANKQMAAALGLSEGTIRVYLSRLYGKLGVTTRTQ 860 Query: 886 AVQHAQQLLKM 896 A+ AQ L + Sbjct: 861 ALVKAQSLNLL 871 >UniRef50_A2SJY0 ATP-dependent transcriptional regulator-like protein protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SJY0_METPP Length = 905 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 219/900 (24%), Positives = 361/900 (40%), Gaps = 32/900 (3%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND----IGW 61 K+ P H V R LLA+L R+ + PAG+GKT+L+ Q A GW Sbjct: 17 KILPPHAHRHAVERSALLARLFRDVAERVVVFQGPAGHGKTSLMLQAQAASASGGALTGW 76 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 SLDE DN R +L A+ ++T L L E Sbjct: 77 LSLDESDNDIRRLLGHL-QALLTVLGSQSPTPPNEDYAGSAGTITPRSDWLIGRLLELGR 135 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P+ L +DD H IT+P +R I + P+ + + SR +P++G+ L V D+ L + + Sbjct: 136 PVALFLDDLHAITDPGALRLLRELITNAPDRIRWFLASRVVPEVGLPRLVVGDEALVVSA 195 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 + L F+ E + FD + E I GW A+QL L+ + S S Sbjct: 196 EDLRFSRAEMRHVFDADRGLSVSDTELDAIFRGTEGWPAAVQLYRLAL--GSASVRHSLA 253 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 G ++DYL + VL + FLL++++L M+ AL V G +GQ L + Sbjct: 254 SGCGGAPREVADYLAENVLGQQPPPVQDFLLQTSVLSRMSAALCDDVLGRSDGQEMLASL 313 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 ER GLF++R++ WF YH +F NFL+++ +HR AA + +QG EA+ Sbjct: 314 ERDGLFVRRLESGEGWFTYHAIFANFLQEQLARTQPEHRVAVHRRAAAWFESQGQLEEAL 373 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HH L+AGD ++ + + +L + ++ LP D+ P + + +W Sbjct: 374 HHHLSAGDDDRACEVFDHWSDALVPDGHFATVDRWSHRLPADAATRRPGIAVKLSWAFTF 433 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 R+ ++ LL ++ + + + A+ +P A P Sbjct: 434 LIRHEQLAPLLPVLRA---NLARRLIEGDPRLALSMAAVLQDDPARALEYVAHTEHREPT 490 Query: 482 GWF---YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 + +V G V +GE +L + Q ++ + + +SL+ L Sbjct: 491 SNRFRNFELAAGHNVRGFVGMMRGEFGPALHSLAQGRSLSERSNATFTLAYSLVHSGLTL 550 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 AQG L A E A LE+ L L+ + +A A + Sbjct: 551 VAQGQLPEAVEHLRGAI-SDRRMVLEESVSKACLACALVMALYEADQTGDALALFEQFHD 609 Query: 599 -VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW-ISNANKVR 656 ++ + + C + + RG+L A L E L NG++ + +VR Sbjct: 610 MIVEASLHDYLVVCYRAVARIRDQRGELALALETLEEAERLSYNGRWPRAVQLIQGERVR 669 Query: 657 VIYWQMTGDKA---AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIV--L 711 D+A AA + + + I R ++ L A+ + + Sbjct: 670 RELVAGRVDRAQTLAARLQPESRSDTDDWVRFSEETDGPRIGRIRLDLHAGRAAQALDEI 729 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 A+ + R L + G+ A R L AL+LA ++ F+ EG Sbjct: 730 GACLAAAQRQGRVHRQIRLQTLAALAHHSLGQTRPAHRCLQLALELAAPGRYVRMFLDEG 789 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 A+A LR L A+ +L + + A D + Sbjct: 790 PALAALLRAHANLPAAAPENGAEARALLGRLIEASGTAPAPADTPW-----------RAA 838 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 PLT+RE +VL ++ SNE+IA L V+ T+K H+RN+Y KLGV R +A++ + Sbjct: 839 ALEPLTKREHKVLAMLVDYQSNEEIASALCVSRDTVKFHVRNIYSKLGVKTRLEAIRVVK 898 >UniRef50_Q21QQ8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QQ8_RHOFD Length = 894 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 196/903 (21%), Positives = 361/903 (39%), Gaps = 37/903 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 L+ +K++ + R RL + A+ RL +T+P G+GKTTL + W A + Sbjct: 9 LLGTKVNSLRAPRGAIDRARLDVVRAAASFARLVTLTAPGGFGKTTLAAAWTTHWLASGH 68 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 W SL++ D++ RF L AV + G + Q A+ ++ + L +L Sbjct: 69 HCAWLSLEQDDDEPVRFMHGLTHAVDRLGPGVGQSALALLQGSVLAAPRAVVSLLVNDLE 128 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + +++V+DDY I + IH++M F + H P + LV+ SR+ P L ++ LR + L Sbjct: 129 KVQGEVFVVLDDYQWIHDSAIHDAMAFLVSHVPSTVHLVITSRDAPPLMLSRLRAHGEWL 188 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + + + F +E F + P AA+ +++ GWA AL++ AL Sbjct: 189 NVDANAMRFDAKETDHFLRTACAQPPTAAQIAQLYASTGGWAAALRIAAL------GPGG 242 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + AS +L++++L ++ + T F+ ++A+L +N L VT +E+ Sbjct: 243 AGVLEASASGASRAFTHLIEDLLASIPVDTVRFMAQTAVLEHLNVDLCNAVTAQEDSAEL 302 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L+++E+ ++ +D G W Y L ++L L + ++H AA+ + Q Sbjct: 303 LDQLEQVNQLVEPLDSEGRWLRYPQLLRDYLLGPLTQRLKIDQLQLHGRAAQWFARQSAW 362 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 ++A+ HALAAGD + +++ +L +L L + P + L P + L AW Sbjct: 363 TDAVRHALAAGDGTQAIEWMVHCCMALVKTGDLMTLVGWRRQFPAELLRSQPSVQLAVAW 422 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIR-EDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 + RY + LLA E I A+ A+ A A + A LA+ Sbjct: 423 GLTLAMRYEDAVPLLAEIERANPLITGHADAQAQCLAVHAVAAGLQDDSARAGELARAWC 482 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 E G ++ V ++V+ V + + ++ + Sbjct: 483 ELGVQGDAWTFNVVSNVMRYVHWVSRDWAGVYEQPWEPYSFEEDRRNVFSTVYREVILGY 542 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 + QG L A +A + Q + A L + RL+EA A Sbjct: 543 VEMEQGRLGLAERHAREALRQAEMYAGTQSVSAALAAPLLAMLHYEHDRLEEAAALLHPL 602 Query: 597 IEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL---LGNGKYHSDWISNA 652 + + + + +Q +L + + +G + A + E + G + + Sbjct: 603 VSLTDNTAILESVMQTYLVLSRIAWIQGQCERAFELIGHAEAIGYNRGWDRLVGAMLMER 662 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTA----KPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 K + ++ A A R A P + L + A + A Sbjct: 663 LKRLIDENRLDEANATAVRLARLAALKATLPSGVHTDLLVFRDWGHALVALADRRASEAR 722 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 I L L + A+S R + L + + A L + + A R G + Sbjct: 723 IALRRLFDLAKSERNDLRAIQTGTSLVLAHMADDDRDGAFETLREVILTAQRIGVHRSIL 782 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 G + L + + + +R+L + Sbjct: 783 DAGGDLQALLPRFLVSSHCNAELAISVRRLLAVDANEAD------------------KAN 824 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 + LT+RE VL L+ SG SN+++A + ++A T+KTH+++++ KLGV R+ AV Sbjct: 825 KTGVAGTLTERERDVLMLVASGQSNKEVARSMNISAETVKTHLKSIFGKLGVQQREQAVV 884 Query: 889 HAQ 891 A+ Sbjct: 885 LAR 887 >UniRef50_D1UL69 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UL69_9BURK Length = 921 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 212/906 (23%), Positives = 365/906 (40%), Gaps = 34/906 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK----N 57 L+ +K S P V R +LA+L RLAL+T AGYGKTTL++QW + Sbjct: 30 LVSTKFSPPRIGAKHVARADVLAQLQRMQYCRLALVTGSAGYGKTTLLAQWREARLKTGA 89 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 ++ W SL D F L AA+Q+A G + + +++ + A + Sbjct: 90 EVAWLSLTAEDKNYIDFCGALFAAMQRA--GMAVEMDLPLESTSASAMDASIAAIVEAAI 147 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + LYL IDDY + P+ H M+ + H P NL V+ SR P L ++ LR+ +Q++ Sbjct: 148 DLPKDLYLFIDDYQHVEAPLAHRFMQKLLDHGPGNLHFVIASRVAPPLSLSRLRMMNQIV 207 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSS-PIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 EI S L F E + F D L I A E + I + SGW + LQLI + + + Sbjct: 208 EIESAGLPFDLAETRAFIDENLGPGKINADELTLIQELTSGWPSCLQLIVIMLKNRPDA- 266 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 ++ +S L YL +EV+ ++ F + +ILR + AL VT E+ Sbjct: 267 -RAMLHDLVWRSSDLQTYLSEEVMAHLPAELAGFAVALSILRRFSPALARAVTDNEHASD 325 Query: 297 RLEEIERQGLFLQRMDDTGE--WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 ++ +E + L + R+D W+ +HPLFG FL R E E+HR A+ + A Sbjct: 326 LVQRMENENLLIIRVDSDDRSAWYRFHPLFGEFLATRLAQREPEEARELHRRASRWFAAH 385 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G +EA+ HA A GD ++ + ++ LS L+ LP ++L ++P+L+ + Sbjct: 386 GQLAEAVRHASAGGDVEFAASVIERSTPAKWSLEYLSPTLHLLEQLPEEALFQHPKLLFM 445 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + R + LA + E + + + A +A + + Sbjct: 446 ACLTVALTTRPAKAKAWLAHLKTEALAGYPELARS-LPLIHAAIAFQHDDTQRMIDALEP 504 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 + + + + + L G + + +A AL + Sbjct: 505 -HRDASIENPFLQFLLVAELCSAYAAAGRYADAKRMFD-LHPIAPAERDNDMALVAQATH 562 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 + L +G ++ A + + A + R+D+A + Sbjct: 563 ASTLLLEGNVREAERQSAALLARSLQAVGRHSISANVSASVLADAWYELDRIDDARETIA 622 Query: 595 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 + +L S P+ ++ ++ L + D A + L G+ + ++N Sbjct: 623 NRRGLLQSSGPEVMIRTSLCRVRLDLLQEGPDAALAFLQHQAAHFGSMR-QPRAVANMLA 681 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL--------GEFEP 706 +V + D+A A E A H + + L E + Sbjct: 682 EQVKVLLLKHDRARALEVAGLLD--ELARTHAAARGHKAEIASLAALARARLTRDDEPQE 739 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 + L+ E A+S LL + + AQ L+ A++ A R G + Sbjct: 740 SLRALQITGEYAQSFGRGRLAALVDLLSATAFAEMKNADGAQACLVRAVESAQRLGLVRT 799 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 FV EG + L ++++ TL A +L + P Sbjct: 800 FVDEGAPAGKLLARMVRERTLEGGALRYANELLDRFPESSVSDGTTGSPRRSTGSKLQP- 858 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 LTQRE ++LGL+ SN++IA L + T+K ++RN++ KLGV+ R DA Sbjct: 859 --------VLTQREIEILGLVAQAMSNKRIALALNITLETVKWNLRNIFAKLGVSSRYDA 910 Query: 887 VQHAQQ 892 + A++ Sbjct: 911 MVWARK 916 >UniRef50_C6XP68 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XP68_HIRBI Length = 905 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 197/911 (21%), Positives = 365/911 (40%), Gaps = 43/911 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND--- 58 LI SKL+ P + VVRE+L+ +L RL+LI +PAGYGKT+L+SQW + + Sbjct: 8 LIKSKLAPPSWIGGQVVREKLIKQLDAVFTHRLSLIVAPAGYGKTSLLSQWWNVERNRKS 67 Query: 59 --IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 I W +L+ D A Y+ +A+Q A + +SL A L L Sbjct: 68 CFIAWVTLEAEDADVAMLARYIQSALQIALLDDAGDAAHKSGYNNIPPSSSLSAAL-NLL 126 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + P+ +V DD H P + +R FI+ P + V SR+ P+L A L +Q Sbjct: 127 DRFDRPVVIVFDDLHSAGVPEVELFLRKFIKLAPSHCHFVFASRDQPRLDQATLAAENQF 186 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 E+G +L F+ EA++ I + +I + GW ALQL LS +Q + Sbjct: 187 FELGMGELKFSEDEAEKLLIQNTVQGIGDTDFQKIYNRTEGWPIALQLTFLSLKQGVDLS 246 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 R +L++YL ++VL ++ + + +L + + + ++G Sbjct: 247 QLVDRF--SQPTGNLAEYLSEQVLLSLSPEDEEIVSHTVLLDHLTGEAVNFLCDRQDGWD 304 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L +E +G+FL + YH +F ++LR R + + ++H+ AA + QG Sbjct: 305 VLVRLEGKGVFLMPDSPNRNSYRYHQVFRDYLRSRLERNQSELYTKLHKKAARWYGDQGR 364 Query: 357 PSEAIHHALAAGDALMLRDIL-LNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 A+ HA+ A D ++ ++ W L + +L +++ + + L ENP L L Q Sbjct: 365 IGRAVSHAINANDEKLIAALVDEAGGWRLIPIGRIDVLSQAIDHISDEILEENPGLKLGQ 424 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMH-AEFNALRAQVAINDGNPDEAERL-AK 473 +LM I+ T E + ++ + P + L A+ Sbjct: 425 IYLMIKGGDLTGARECYQEYTTRIEAEILPTGKWNEVKLVGDIISEYENRPVTLDDLIAR 484 Query: 474 LAL-EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 AL + LG G L R+L + + + + + L++ Sbjct: 485 EALIPSVNSDDHIMLGHLNEALGAQYLDGGWLERALGPILEARRHHQALGSLYSDLFTQF 544 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 ++ + QG L A + +A I + + +L + LD+ + Sbjct: 545 LEARVRRGQGRLNEALQILNEAKLKIENSFGARSDLAANCASYLGELAYDQDCLDDVDEL 604 Query: 593 ARSGIEVLSSYQPQQQLQCLAML--IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 + + ++ A + A+G L ++ L ++L I+ Sbjct: 605 LEWALPHMEESDGWFEVYTAAYFTSARRFAAKGSLRESKIILEEAKSLARRRGLLQLEIT 664 Query: 651 NANK---VRVIYWQMTGD---KAAAANWLRHTAKPEFANNHFLQGQW---RNIARAQILL 701 + + + Y T D KA A + + A+ + + H+ Q + + Q+L Sbjct: 665 SELCWFDIELNYDTSTTDFTEKANALKVITYAAEMKERSPHYRQVAIIASMCLVKMQLLS 724 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 G+ + A LE L AR + L +L + + A + L +A+ ++ Sbjct: 725 GDAKGALETLEPLRTFAREHGVGRLLIEVDILTSAALEKMDDSMAALKCLDEAVNMSIFQ 784 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 I FV L+ +L I + ++ + + +R Sbjct: 785 NIIRPFVD--------------LSRFYDLSAEHRFEIGEQSDRFKKQFLQTVSKALSQRR 830 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 LT E ++L + +G SN++IA ++ T+K ++++++KL V+ Sbjct: 831 RRDDA------EGALTSGELEILNYLNNGLSNKEIARLTSISPNTVKFRLKSVFKKLDVS 884 Query: 882 HRQDAVQHAQQ 892 R+DAV A++ Sbjct: 885 KRRDAVMIARE 895 >UniRef50_A9BM99 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=cellular organisms RepID=A9BM99_DELAS Length = 924 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 218/921 (23%), Positives = 363/921 (39%), Gaps = 52/921 (5%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQ----WAAGKNDI 59 +KLS P V R + A+ A R+ L+ +PAG+GKTT + Q A Sbjct: 21 QAKLSPPRAAAAQVARLAVAARWPEALRARVVLVRAPAGFGKTTAMRQMRERLQAEGQAT 80 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W +LD DN RF L AAV+ G ++Q LA Sbjct: 81 AWLTLDAADNDVSRFLQCLGAAVRTLGVGPSQGAGELSQA-------------LHALAGE 127 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L IDD+ ++ N + +R + PE LV+ SR LP LG+ LR QLLEI Sbjct: 128 GRSFALFIDDFEVLHNDAVLGLVRQLMEQLPERGRLVIGSRALPALGLGRLRTSGQLLEI 187 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L F+ EA++FF R P+ +R+ D GW AL L +L+ + H H Sbjct: 188 DAALLRFSVGEAEEFFRLR-GCPLPREALARLLDKTEGWIGALWLASLALER--HGPHSD 244 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 + ++DYL ++VL + R FLL+++ILR+++ + + +G L+ Sbjct: 245 FIERFSGSERAVADYLAEDVLAQQPASVRDFLLRTSILRTLDAQVCQALVPRADGAAMLQ 304 Query: 300 EIERQGLFLQRMDDT------GEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 +E+ LFL + D G + YH +F +FLR + E EL +H AA+ + + Sbjct: 305 ALEQAHLFLVPLADEAQGGQGGHSWRYHSMFADFLRAQLLREQPGELTRLHLAASGWYES 364 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 G P AI HAL GD +L HA +L + LL A+P + P L Sbjct: 365 CGRPVPAIEHALEGGDLPHALSLLARHAEALMEQGRMRLLSRWFSAMPAPLMAREPLLQA 424 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 + A+ + L + + A AL+ + +EA L + Sbjct: 425 VAAYADCFTRGPWQAQQRLDALRPRM--AADPAAQALVMALQPLLLAMMDRVEEAAPLGR 482 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 AL LP ++ T+ + V+ G+ + L+ + Q +++ Sbjct: 483 QALACLPSCRPFADSSLTNAMAYVVSVLGDAEEAHRLLDAAR--STQAGSLFSRMYTEAM 540 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLE-QLPMHEFLVRIRAQLLWAWARLDEAEAS 592 + + + G L+ A A + + + A +L+ LD A+ Sbjct: 541 EGVLDLSGGRLRQAASRFRVALAATPRSASYNPTNGNAWAGVLHAGVLYETNDLDGADHL 600 Query: 593 ARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 + + P + M + + RGD+D A L LE LG+ + ++ Sbjct: 601 LNVYLPLARDVGLPDHVISSYRMRARIAFVRGDVDAAFGLLTELE-YLGHERQLPRVTAS 659 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN--------HFLQGQWRNIARAQILLGE 703 A + + G++AAA+ L P H ++ R + G+ Sbjct: 660 ARLEHARIFVLQGNRAAASEALERADDPGVWPRVERLRLPPHEVEDIAIARLRWGLHFGD 719 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 + L +A+ + +L G A +L L+ GF Sbjct: 720 CRAVRDAIAPLLADAQLRGRRHRSLKLQVLCALAEAGCGDMDAAAAMLAQPLRHGASEGF 779 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRIL-----------REINQHHRHKFAH 812 + + EG +A L++++ + +R R ++ Sbjct: 780 VRLMLDEGPLLAPVLQRVLSPSLSLSQTPSLTRRTEAAEPEAAAHAQRLLSALGEPAEPA 839 Query: 813 FDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIR 872 VP PLT++E +VL L+ SGYSN +A +L V+ +T++TH+R Sbjct: 840 DPPELQAADAPQGPVPATALAEPLTRKELRVLELLASGYSNAAMAEKLFVSDSTVRTHLR 899 Query: 873 NLYQKLGVAHRQDAVQHAQQL 893 ++ KLG R AV A++L Sbjct: 900 SINLKLGARSRTQAVALAREL 920 >UniRef50_Q0KDB0 Transcriptional regulator, LuxR-family n=1 Tax=Ralstonia eutropha H16 RepID=Q0KDB0_RALEH Length = 903 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 200/904 (22%), Positives = 365/904 (40%), Gaps = 30/904 (3%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GK 56 +LIP+K + P + R +LLA+L + + RL L+ AG+GKTTL++QW Sbjct: 13 LLIPTKFAPPRISPQSTPRAKLLARLLDSRDSRLTLVCGSAGFGKTTLLAQWRQQLLKDG 72 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W SL + +F +YL A+QQA ++ R + L A + + Sbjct: 73 ELVCWLSLSPDERHLPQFRAYLTGALQQAGLPVDDGTALASEVRADLPVAGLIATIVDAV 132 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + ++L IDDYH + + H ++ + H PE L L++ SR P L ++ R+ +L Sbjct: 133 CQRRQEVFLFIDDYHHVDDSDTHALIQGLVDHGPETLHLILASRTHPPLAVSRQRLTGEL 192 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 EI L F E + F L + ++ I D GW LQ+I + +++ + Sbjct: 193 SEITFPDLPFDFAETQDFLAKHLGDVV-PDDARLIHDITDGWPVCLQMICIRLKRSPANR 251 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 ++ L + L YL ++V+ ++ F+ K ++LR N L VT Sbjct: 252 DVLSQML--HRRTDLQRYLSEDVVRHLAPDVTDFIEKLSVLRRFNADLAQHVTANAKAPA 309 Query: 297 RLEEIERQGLFLQR--MDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 L++IER+ LFL +D W+ +HPLF +FL+ + Q A + EIH A++ + + Sbjct: 310 LLDQIERENLFLLPAELDSPQPWYRFHPLFASFLQDQLQQRDPALMREIHARASQWFEQR 369 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G EA+ HA A D ++ + + S S L+ + LP D LL +P+L+LL Sbjct: 370 GLLIEALRHAYHAHDTEAAVHLVERADLPIRSMSFFSTLQHWMDELPADMLLGHPRLLLL 429 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 W + + R+ + L R E + + + LRA +A+ + + A L Sbjct: 430 GCWALVAAGRWRDAQGWLERLEKTPRTLAPG-LALHALYLRASIALQRDDTEAALALVAP 488 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 + + + R +VL G + +L + ++ R AL + Sbjct: 489 S-DFESLTDRFLRQAHLAVLSFSYCAAGRYEDARSLHEHIARLPRSELQDDMALVAESTL 547 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 +G + A T H + A + L EA Sbjct: 548 LLSHLLEGNNREAIRTGSALVARAEAAHGRRSVSAVNSAAFLANAYYEADLLAEANEVLA 607 Query: 595 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE---NLLGNGKYHSDWISN 651 + +++L P+ + + + + L+ E L + + ++ Sbjct: 608 NRLDLLRLSSPEPMTLAIIVRSRLMATQASAAQGLHALSEEEVRCRELALDRPLAYVLAG 667 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ-WRNIARAQILLGEFE--PAE 708 ++ + + R ++ + + + + A++ L + A Sbjct: 668 QARLELQLNHQDAARKLQTELDRLASRYRYGTGFLAEIEAIAALTGARLALAGMDWNEAL 727 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 E L + + + LL + ++A R+L A++ A R G + + Sbjct: 728 ARAETLRNYGVAYGRQKCVVQADLLAGTALAEMDEATEAMRLLRAAVEAAQRLGLVRTLL 787 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 EGE + Q L+QL + + + R + H + A E Sbjct: 788 DEGERVRQALQQLQPTLGPGSGGDYLVEVLRRGVAAHTPVQQAG-------------EPD 834 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 L RE ++L L SN++IA L + T+K +++N+++KLGV R DAV Sbjct: 835 AQANGPELKPREIEILRLAAESMSNKRIALTLNLTLDTVKWNMKNVFEKLGVPSRYDAVI 894 Query: 889 HAQQ 892 A++ Sbjct: 895 AARR 898 >UniRef50_B6IXM7 Transcriptional regulator, LuxR family protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IXM7_RHOCS Length = 907 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 210/923 (22%), Positives = 368/923 (39%), Gaps = 55/923 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 +IP+KL+ P +L V R L+ +L + RL L+ AG GKTTL+ QW A Sbjct: 11 IIPTKLAPPHQLVDLVDRAGLVGRLEEGRSARLQLVVGAAGSGKTTLLGQWQRQLARAGI 70 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 GW SLDE D SY++ ++ +A + Q + + L ++A Sbjct: 71 PCGWLSLDEDDGDPTHLISYVVLSLARAGVPLGQLTRLAQQGLVDMPCKAALSALVNQIA 130 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 P+ L++DD+H + + + + P NL+LV+ R+ P+L +A L+ Q+ Sbjct: 131 GHGGPVVLILDDFHRAESREVDALLGGLLSFLPANLSLVISGRDRPKLPLAGLKAMGQVR 190 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+ + L F+ QEA+ + A+ S + + GWA A+QL + + A Sbjct: 191 ELTAGDLRFSAQEARHILHD----LLPDADISALTERTEGWAVAIQLARIWLEAGSDRAR 246 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 R + ++DYL ++VL ++ R FL+++AIL +N L VTG + R Sbjct: 247 LLDRFCG--STRDVADYLAEQVLADLPEDLRQFLMQTAILERVNADLAEAVTGRGGARAR 304 Query: 298 LEEIERQGLFLQRMDDTGE--WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 L + R L +D G W YH L ++LR + AA LP++H A+ + A+G Sbjct: 305 LARLSRLDSLLVPLDGEGSGGWLRYHHLLRDYLRDVLARDHAALLPDLHARASRWFEARG 364 Query: 356 FPSEAIHHALAAGDALMLRDILL-NHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 F +EA+ HA GD ++ WSL + LL L+ P +S L +P+L + Sbjct: 365 FLTEAVRHARLGGDLASAARLVESAGGWSLILSGGIGLLRNLLQNFPAESFLRHPRLGIS 424 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDI----REDTMHAEFNALRAQVAINDGNPDEAER 470 + +L + LL R + + + + + + +A + A+ Sbjct: 425 RVYLHIKDGELAQARRLLHRIPGADRPLELIQEQPAFARDALIIGSLLAGYEDAAPTADG 484 Query: 471 L--AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 L + ++++P +V L G+L ++ + + Sbjct: 485 LVALRRVIDDMPEDDQIGSGALRTVEAVQLLHLGDLAGVERAGRRALRHMSAANSILGLA 544 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 + L + +G + A T +A + + + + A++L DE Sbjct: 545 YCLFHLGQSALYRGLRREAEATYREAMAIAADNFGADSGLKAVAAVLLAEVLHEAGHGDE 604 Query: 589 AEASARSGIEVLSSYQPQQQLQC--LAMLIQCSLARGDLDNARSQLNRLENLLG-NGKYH 645 A A + + + + + LA+G+ D A + L R E G Sbjct: 605 ARALIGPALAQIETADGWLDIYASGYRVAAALQLAQGEHDGALAVLARGERTAAERGLAR 664 Query: 646 SDWISNANKVRVI--YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 703 + + R++ + + A A + + + +A++LL E Sbjct: 665 LGRLIACERARILTAMGETAWARDALAPLQAELPLMRASPAAWRERHAFLTVQARLLLAE 724 Query: 704 FEPAEIVLEELNENARSLRLMSDLNR--NLLLLNQLYWQAGRKS--------DAQRVLLD 753 P + R+ ++R L+L + + +S D L Sbjct: 725 GHPHAALEAAGEAAERAREAGMTVHRIQALVLKAEAATRLAVESGGPHDTTADPVAELAQ 784 Query: 754 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHF 813 AL LA G F+ GE +A LR LR + A Sbjct: 785 ALTLAAPEGLRQVFLEHGERLAPLLRD-----------------CLRRSREIGLDSLARA 827 Query: 814 DENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRN 873 +ER L P L+ RE V+ + G SN++IA L + T+K H++N Sbjct: 828 FAEELERTLARPR----DEADTLSPRERAVVIELCRGASNKEIARALAMTENTVKFHLKN 883 Query: 874 LYQKLGVAHRQDAVQHAQQLLKM 896 ++ KLGV R A+ A++LL + Sbjct: 884 IFGKLGVDRRAAAIITARRLLGL 906 >UniRef50_B1IL87 Transcriptional regulator, LuxR family n=5 Tax=Clostridium RepID=B1IL87_CLOBK Length = 865 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 192/901 (21%), Positives = 389/901 (43%), Gaps = 58/901 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN--DI 59 LI +KL P+ + V RE+++ +L ++++ I AG GK+TL+S + KN + Sbjct: 7 LIRTKLISPMPRKNYVKREKIIKELEDIKDYKVTTIKGAAGSGKSTLLSSFIKDKNLSGV 66 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHC-AICETMAQKRQYASLTSLFAQLFIELAE 118 W SLD+ +NQ + F YLI +++ + + T + + ++ + EL++ Sbjct: 67 NWISLDKENNQWKSFWYYLIEILKKYLEDNGKELTNTFNTFIRKDEIFNVIPYIVNELSK 126 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 +++V DDYH I + ++ ++ + I++ N+ + L+R L + LRV+ QLLE Sbjct: 127 -KEDIFIVFDDYHYIKDEFLNSTLEYLIKYSSSNIHYIFLTREELLLYLGELRVQGQLLE 185 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I + L F+ E F L+ + +I + GW +QLIAL+ + + Sbjct: 186 IEEESLRFSKGECLSFIKNTLNIELTEDIIDKIFNISEGWIAGIQLIALALKSRKDNIFS 245 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 L ++ +YL +E+L + R FL+K++IL N L + N + + Sbjct: 246 DISVL----NKYVIEYLTEEILKQLSENERIFLVKTSILNYFNVELCNDILNITNAEEII 301 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 + + + LF+ +D+ + YH LF FL E ++H A E++ QG Sbjct: 302 DSLIDKNLFVIIIDEKRSIYRYHHLFNEFLNLTFSKINKDEQIKLHLKAYEAFKKQGDIE 361 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 EAI H L + + N+A ++ + LK +P + L+ + +L L + + Sbjct: 362 EAIKHLLEIKAYDKVLIEIENNAQNI-------EVWSYLKEIPIEYLITSKELTLQRLFY 414 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQ-VAINDGNPDEAERLAKLALE 477 E L+ +++IK+ F + A + I D + D AKL L+ Sbjct: 415 HFVNLEVNECKNLIDILDNKIKE------REWFEVINAFKIYIYDSSLD-----AKLNLQ 463 Query: 478 ELPPGWFYSRIVATSVLG--EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 + F A L + +G L +++ + ++ + ++++ + + +S ++ Sbjct: 464 YIEKFDFSEITKAIIYLNSCYIFFAQGYLDKAIYYLDKSNSIGEKYNISYISFFSKSIKA 523 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 L G L A +++++ + + A + + ++E R Sbjct: 524 CALEELGELYEAECILNNMKEMLDKMPIL-SNLMFMYHLGIAGIYMKRFEIQKSEEELRL 582 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 L L L++ +G + + N+L + + D + Sbjct: 583 INGFLCDGYEFADRGILYNLMEFEFLKGYKEKGKELSNKLITI--HTTKEKDILLYLYSA 640 Query: 656 RVIYWQMTG---DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 712 R+ Y+ ++ + + + +N + + AR +LGE E A+ +L Sbjct: 641 RIKYFISADIYSNENLQEYKVLFERQQKNSNTYIRIDEKITYARVIYILGEQEKAKDILY 700 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD-AQRVLLDALKLANRTGFISHFVIEG 771 + E +R L L++L + + +L +A+ + ++ +V+EG Sbjct: 701 KCLEYSRKKSFKIYLVDGLIVLTLILEELNESKRTTFNLLREAIHYSVDNRYLKPYVLEG 760 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 E + I++E+ + ++NF++ L++ E PE + Sbjct: 761 EKL---------------------LNIIKELKNDKDIELTSKEDNFIKNLIDIME-PEKV 798 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 + LT+RE +V+ +++ G SN+QI L ++ T+KTH+ N+Y KL V++R AV+ + Sbjct: 799 KGELLTEREKEVMEILFEGSSNKQIGKRLNISLATVKTHMINIYSKLQVSNRVQAVEKYK 858 Query: 892 Q 892 + Sbjct: 859 K 859 >UniRef50_Q2SM19 ATP-dependent transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SM19_HAHCH Length = 902 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 206/923 (22%), Positives = 370/923 (40%), Gaps = 56/923 (6%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DI 59 M++ SKL P + R+ L +L G + L+++P G+GKTT ++Q+ + Sbjct: 1 MILTSKLQPPQLPTQLLPRDALQHRLGGILKKPVTLVSAPPGFGKTTALAQFLHREQLPY 60 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYA--SLTSLFAQLFIELA 117 WY+LDE DN F Y+ A + + A ++ SL +L Sbjct: 61 LWYALDEQDNVPGIFWRYVCAGFESVFPKIGPRSARILSVDDDALNAVRSLLDELTQLGR 120 Query: 118 EWHSP--LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQ 175 W P + + IDD H +++P++ + + +F+ H P L + ++SR +P L I +VRD Sbjct: 121 TWRRPESMLMAIDDVHYLSDPILLQQLDYFLDHLPPYLHVALISRTIPPLHIPRRQVRDS 180 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 LL + ++ L T E +F RL +EAAE ++ GW ALQL L+ + + Sbjct: 181 LLLLDAEHLRLTEIETPKFLQTRLGLNLEAAEMKKLHRLTDGWIGALQLYGLNLQSQPAN 240 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + +++ YL +E D + LL A++ N L ++ + Sbjct: 241 PLLNLN----APPENVAAYLAEECFQQQDDWVQAGLLNLALVPRFNLQLANQLCPGADAA 296 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 + LE + ++ LFL G W+ +H L ++L+ R Q EL +H AA+ + QG Sbjct: 297 LLLETLLKRQLFLSETSADGAWYRFHDLLRDWLQLRNQDRPPGELQILHGQAAQWYAEQG 356 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 + EA+ AGD + L+ L +P + + P+L+ + Sbjct: 357 YFLEAMEQWTLAGDWEQTALCAGRALPEILRMGHYPLVARLLAKIPPEQMRRYPKLLAQR 416 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE-----------------------FN 452 A+L ++ R+ EV+ L AE + + E++ + + Sbjct: 417 AFLQLTRMRFDEVDADLDLAERYVDAMLEESGNPQTLTRLKRQYGLQESESIRELKCMII 476 Query: 453 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQ 512 R+ +A P+ A + + + LP LG + +G L + L+ Sbjct: 477 LGRSHIARMTDKPELATEQLEQSRDFLPEQDSPFTAWLFQGLGADEYIRGSLHAAQYLLM 536 Query: 513 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 572 + + +R+++ + +L +L QG LQ A E ++ + +H+ LP L Sbjct: 537 RALRSSRKYEEGFCLIATLSWLIPVLLQQGKLQFAKELLDEQQSWLESRHMHCLPNWGNL 596 Query: 573 VRIRAQLLWAWAR-LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ 631 +R +L + A+ R ++ LA+ D A Sbjct: 597 HYLRLLILLELEQPAAAAQELERLWDCADERVMAVDRVYHKWGEFALRLAQQDYQQAEKA 656 Query: 632 LNRLENLLGNGKYHSDWISNANK-VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 690 L++L+ +++ + ++V+ ++G+ A W A A LQ Q Sbjct: 657 LHQLDAYFQQHFTQWNFVVPSPATLKVLLDALSGNPFPLAQWA--AAYDTKAPIVNLQRQ 714 Query: 691 WRNIAR-AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 749 + A+I + + +L E + + L+L R S A+ Sbjct: 715 TIELMMYARIKIYQQADELDLLLERLPLIQKAGNLYFSINLLVLCCLNELAQARPSSARE 774 Query: 750 VLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHK 809 L A+ A G F E + L + + R + Sbjct: 775 FLTQAVNAAAPLGVRRPFREEITFLQPLLMDMAR----------------RGQATTFISE 818 Query: 810 FAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKT 869 + + NH P L+QRE +L + +G SNE+IA L +AA+T+KT Sbjct: 819 LSVYSAPQTRPQRNHSNSP---LMEELSQRETTILNHLSAGRSNEEIAVALNIAASTVKT 875 Query: 870 HIRNLYQKLGVAHRQDAVQHAQQ 892 H+RN+Y K GV R A+ A++ Sbjct: 876 HLRNIYAKFGVRRRTQALAIARE 898 >UniRef50_A2SE70 ATP-dependent transcriptional regulator-like protein protein n=2 Tax=Methylibium petroleiphilum PM1 RepID=A2SE70_METPP Length = 933 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 212/910 (23%), Positives = 354/910 (38%), Gaps = 46/910 (5%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQ----WAAGKNDIGW 61 KL P V R+ +L ++ ++ R+ ++ PAG+GK+T + Q A W Sbjct: 44 KLFTPPVYPGAVPRQAILDRVLQDDSLRVTVLQGPAGHGKSTTLQQIKTAHEARGWRTAW 103 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 +LD+ DN RF S+L+ AV +G A A L + L+ + Sbjct: 104 LTLDDADNDPRRFESHLV-AVMSLLHGRAASPGASRSGTGDAP-RDLADWMLDTLSGRIT 161 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P + ID++ + N + R + P N+ + + SR LP++G+A L V + + Sbjct: 162 PASIFIDEFQALRNEALLRFFRSVLARLPANVHVFIGSRTLPEIGLATLMVNRVASVVRA 221 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 L FT E QFF S + A E I GW +QL L+ + Sbjct: 222 DDLRFTPGEVTQFFADSASLQVSAGEVDAIYRRTEGWPAGVQLFRLALVS--PEVRMALD 279 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 L++YL D V+ + FLLK+++L+ ++ L T VTG E+ Q L + Sbjct: 280 GADDHGPRELAEYLADNVMSLQSPRMQEFLLKTSLLQRLSAPLCTAVTGFEDAQELLVRL 339 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 ER GLFL+ +D WF YH LF +L + Q L ++H+ AA+ +A P EAI Sbjct: 340 ERSGLFLRALDSDNRWFRYHGLFSTYLAETLQRNGPEALRQVHKKAAQWCLAHELPEEAI 399 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HHAL + + L + + L +EL LE LP+ + + P LV+ A+ + Sbjct: 400 HHALCCRNFPLAASTLTDWSSQLVAGAELITLERWHDRLPFHEVAQRPALVIRAAYALMF 459 Query: 422 QHRYGEVNTLLARAEHE------IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 R ++ LL + + D A L + E + + Sbjct: 460 LRRRPKLRPLLELMAPQAGGGDIVPTTNPDLCRAMSFLLVDDDMAAAADTVEQAGVVQRE 519 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 LE P A +VL G+ + + + ++ Sbjct: 520 LEGFPAFEL---GAAANVLALGKVASGDFEGARQALALARAHLGRGGGSFVGGYTAAITG 576 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 L QG LQ A + E L+ L L+ L E+ A Sbjct: 577 SNLLVQGRLQEALAHLRD--ENAQEAPLDTSVAGAALAACHMFALYEANDLATLESLAHR 634 Query: 596 -GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 E+ S + + ARG D A + L+ LE + G+ ++ + Sbjct: 635 FQREISESVTLDFIAAAHIAISRMHEARGRSDEAVAVLDELERI-GHTSPWQRLVAVSEW 693 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA-----RAQILLGEFEPAEI 709 RV G+ A A + ++ ++ + + A+ Sbjct: 694 ERVRRALAGGEIERAVALATRIAPDSRDDAPHWIHLAEDVEGSGYGWIRLAIARHDHADA 753 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 E AR + + +L L + G ++ A R L AL+L R ++ + Sbjct: 754 AQRIARERARQTGRVYRDIKLSVLETLLQQRMGARNAAHRCLRKALQLGRRGRYVRCLLD 813 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP---- 825 EG+ + + LR+ Q L ++ D +++E LL Sbjct: 814 EGDGVIELLREAYQN--------------LLRGHEPGGGTGTDPDRDYIELLLEASGTDL 859 Query: 826 --EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 + T L++RE ++L + G +N +IAG L V+ T+K H++N+Y KLGV +R Sbjct: 860 GRQAAGNALTEALSEREKEMLRFLLDGTTNREIAGRLFVSENTVKFHLKNIYSKLGVGNR 919 Query: 884 QDAVQHAQQL 893 A+ A+ L Sbjct: 920 LQAINTARAL 929 >UniRef50_Q4ZXS3 Regulatory protein, LuxR n=22 Tax=Pseudomonas RepID=Q4ZXS3_PSEU2 Length = 920 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 217/918 (23%), Positives = 363/918 (39%), Gaps = 51/918 (5%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI--- 59 + + RP + V R RL +L RL L+ +PAG+GK++L ++ G D Sbjct: 29 LEGRFFRPPLPEGYVPRARLCQRLDAGLGGRLLLVCAPAGFGKSSLAVEFCQGLPDNWQN 88 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMA---QKRQYASLTSLFAQLFIEL 116 W L D+ RF L+A++QQ + Q+ Q + L EL Sbjct: 89 VWLGLSARDSDPGRFLERLLASLQQFFPQLGTQAMALLKMRQRHQPFAFEEWLDGLLDEL 148 Query: 117 AE---WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 A PL LV+DDYHL PV+ ++F + H P L ++V SR P +A LR+ Sbjct: 149 AMHLMLSKPLLLVLDDYHLAQGPVLDRCLQFLLNHLPAGLVVMVTSRQRPDWHLARLRLT 208 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 QLLEI Q L TH E+ + S +++ + GW L+ L+A + Sbjct: 209 RQLLEINEQDLRLTHAESMAVLERHSGS-LDSEALQSLIQRSEGWVAGLRFWLLAASEAG 267 Query: 234 HSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 + + + + +YL++EV+D + + FL +A L L + Sbjct: 268 DESALP--QTLRGSEVLIREYLLEEVIDCLPADVQAFLYDTACLERFCAELCDAARDGHD 325 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 L ++ +FL +D+ G WF YH LF + LR R +H A + A Sbjct: 326 SAGMLGYLQAHQVFLVPLDEQGHWFRYHHLFSDLLRARQAAGAPP--TRLHLNACRWFSA 383 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQLV 412 QG EA+ AL AG + +++ N + L + +L LP D L P+L+ Sbjct: 384 QGQLDEAVEQALRAGHLDVAANLVQNLSEEQLLAEQNVGMLLRWKMDLPDDLLTSTPRLI 443 Query: 413 LLQAWLMQSQHRYGEVNTL---LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 +L AW + + L L+R + +M A++ AL +A G+ ++ + Sbjct: 444 VLYAWALGLACQLDAAEELANQLSRFLPAPSATAQKSMLAQWLALSGIIARGRGDSEKTQ 503 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 AL LP + R+V S L + G+L R+ L + ++A++ + Sbjct: 504 HYCTEALLSLPEKRYGQRLVCLSTLANLAVANGDLWRARVLNRDALELAQRVANPLFEAL 563 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL-PMHEFLVRIRAQLLWAWARLDE 588 + ++ +L A+G + A E + Q + + +L + L LL ++DE Sbjct: 564 AHYDRARVLQARGEILRALEEVRQGQQRLKDLSTVRLYAVRARLTLYEGYLLTLRLQVDE 623 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD- 647 +G+ + + L ++ G A ++L E L+ Sbjct: 624 GRVLLLAGLAEARACRDISVLIGHCVIATMEGCTGRFAEAFAELAEAERLMHIWDVPPIY 683 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAK-------PEFANNHFLQGQWRNIARAQI- 699 +++ V+ W + G A WL + H Q + RA + Sbjct: 684 YLAMITLVKCELWLLQGRMDLAEAWLLRLTQTYNGGLGAAAPECHPQLPQHIELQRAVLE 743 Query: 700 -LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 758 G+ E L+ L A+ + + L R+ +A+ +LL +L A Sbjct: 744 RQQGDGVACEQRLQALERRAQEVGAKLLGLIAMTQQIGLLLSQARRDEARALLLRSLPAA 803 Query: 759 NRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFV 818 + + + GE QL+Q L R Q L E Sbjct: 804 SGGALMPFNALLGEHPEWLHEQLVQ------LPPCRVQAALLEKL--------------- 842 Query: 819 ERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKL 878 P L+ RE VL LI G SN++I+ +L ++ T+KTH ++ KL Sbjct: 843 -PACCTPSPEAAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKL 901 Query: 879 GVAHRQDAVQHAQQLLKM 896 GV R AV A+ L + Sbjct: 902 GVERRTQAVARAKTLGLL 919 >UniRef50_Q39P16 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Burkholderia sp. 383 RepID=Q39P16_BURS3 Length = 932 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 201/906 (22%), Positives = 370/906 (40%), Gaps = 36/906 (3%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KND 58 I +KLS P + R + A + L L+ +PAG+GKTT+++Q A D Sbjct: 44 IAAKLSPPTAGATDISRVAPRDLVCSAQSATLTLVRAPAGFGKTTVMTQCFARFGRLGFD 103 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 GW +LD+GDN R L + + S+ + +F +A Sbjct: 104 TGWLTLDQGDNDPSRVLHVLNLCLLRMGGER-------PTSGNMPSIEDVTLAVFDRIAA 156 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 +P L +D++ I + + + + P + +V+ SR+ P L + LR + +LLE Sbjct: 157 HATPFVLFVDEFEAIHDQGVIALFQEIVDRLPRHGRIVIGSRSQPHLPLGRLRTQGKLLE 216 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + ++QL F+ E + + + + + + GW AL+ +A A +N + Sbjct: 217 LDAEQLRFSLAETDRMLNGQTGMALSVEDLDHLQRKTEGWPAALR-LASLALENRDATRA 275 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 R +G + +++YL+++VL ++ + FLL+ ++LR + + + + +G+ L Sbjct: 276 LIDRFSGSH-EAIAEYLIEDVLGSLSEPVQAFLLRCSVLRQFSVPVCSALNPGVDGEHML 334 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 + +E+ GLF+ R+D + +H LF FLR + +P +H AA+ + G+P Sbjct: 335 QTLEKAGLFVVRVDAHEPAYRFHSLFAEFLRAQLVRRHPDRVPGLHLAASHWYERNGYPV 394 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 AI HAL A + +L HA L LL LP + ++ ++ ++ AW Sbjct: 395 PAIDHALDAEAFVCASTLLQRHAIDFLAQGRLRLLARWFARLPAGCVADHAEVGIVHAWT 454 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 + GE LL + DT+ A +A + ++A + L Sbjct: 455 VCLTRGPGEAMALLGAS--GWLSASSDTVRAHASACHVALLATLDRVEDAYDEGRCCLAA 512 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 LP ++ +++ V G + L+ + + V ++S + + Sbjct: 513 LPNAHPFAHSSLVNLVANVATTMGHRDEARRLLGAAKSLGDPQSVL-NRMYSEATEGLLD 571 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQ-LPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 +G L+ A A + + + + A+ L+ R+ EAE + Sbjct: 572 LQEGHLRLATARFHLAATIAGGHEATGFTDGNAWAGLLYARALYEADRVSEAEPLLNVYV 631 Query: 598 EVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 + P + AML + + RGD+D A L +LE L G+ + +++A+ R Sbjct: 632 PLARDIGLPDHAIAGYAMLARLAFQRGDIDPAFLLLAQLERL-GHDRRLPRVVASAHLER 690 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFA---------NNHFLQGQWRNIARAQILLGEFEPA 707 + G+ A+ + L H ++ R Q+ G+ + A Sbjct: 691 ARLLLLQGNAEASRSQLDLAEAAAEPWARIEALRFPAHEVETLTIAKLRWQLHFGDPDAA 750 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 L + A + + +L +A + DA + GF+ Sbjct: 751 ARALAQARGAAAADGRRWREMKLRVLECLASLRARHERDALAAAAPLIGTLCAEGFVRML 810 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 V EG +A QL Q + + L A FD + PE Sbjct: 811 VDEG-PLAAQLALRCQADGATRARDPLLEEYLHAC-------IAPFDVEREAPPASVPED 862 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 + LT++E +VL L+ GYSN +A +L V+ +T++TH+RN+ KL V +R AV Sbjct: 863 GTALPAESLTRKELRVLQLLAQGYSNGALAEKLFVSDSTVRTHLRNINAKLNVPNRTSAV 922 Query: 888 QHAQQL 893 ++L Sbjct: 923 AAGRRL 928 >UniRef50_A3TJL4 Regulatory protein, LuxR n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TJL4_9MICO Length = 844 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 199/770 (25%), Positives = 313/770 (40%), Gaps = 35/770 (4%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG---KN 57 +++ +K+ RPV V R RL L + RL L+ +PAG+GKTTL++QW Sbjct: 2 VVLGTKIHRPVPRRDLVHRPRLTDLLGRPQHPRLVLVAAPAGFGKTTLLTQWLGSTTTGT 61 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCA---ICETMAQKRQYASLTSLFAQLFI 114 + W SLDEGDN RF +L+AA+ A + +A + + Sbjct: 62 AVAWLSLDEGDNDPRRFLEHLLAAISVIGGFTEATDLLASANHGPPGHALTDLVLTSIVN 121 Query: 115 ELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRD 174 +L + + +DDYH+IT+P + S+ F + H P + TL + +R P L + LR R Sbjct: 122 DLDTHPADTVIALDDYHVITDPDVQRSVAFLLEHVPRHATLAIATRADPNLPLPRLRARR 181 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +L+EI + +L FT EA F + + +++ + GW LQL LS R T Sbjct: 182 ELVEIRAAELRFTPDEATAFLADAMQLDLTDDQATALATRTEGWPAGLQLAGLSLR-GTS 240 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 + AG + + DYLV+EVL + A R FLL +++L + L VTG ++ Sbjct: 241 DTVRFVADFAGTH-RFVLDYLVEEVLGHQPEAVRRFLLDTSVLDELTGDLCDAVTGRDDS 299 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 LE +ER LF+ +DD +W+ YH LF + LR R + A +P +HR+A++ + A+ Sbjct: 300 AAVLESLERDNLFVVPLDDQRQWYRYHHLFADALRARLAAQDPARVPALHRSASDWYAAR 359 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 +A+ HALA D ++ + LL + ALP + + ++ L + Sbjct: 360 SRSEDAVRHALAGNDPGHAAYLVEQALPDVRRERRDVLLRQWSAALPDNVIRDSALLSIC 419 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKD--------------IREDTMHAEFNALRAQVAI 460 +AW V L AE + T+ A RA A Sbjct: 420 RAWTRLIAGDPDGVEAWLEDAERAMVTHPPTPEPGASVATLEELRTLPATIAIYRASAAQ 479 Query: 461 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 520 G+ R A+ AL+ P +R A LG +G+L ++ Q Q Sbjct: 480 ARGDAAATTRHARTALDLTGPEDHMARGGALGFLGLGAWARGDLAEAVTTFSQALQSLAA 539 Query: 521 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 580 AL + + A+G A E+A + L L A +L Sbjct: 540 AGDVSDALGGTVGLGSMWQARGRPDEARRLFERALDTAGQGRGAALATLGDLHVGLASVL 599 Query: 581 WAWARLDEAEASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 639 LD A + + S P+ + + A+ A G+LD A L+R E L Sbjct: 600 VEQGELDAAAEHLTTATSLGESASLPENRFRWCAVSSDVHRAHGELDAAVDLLDRAEELR 659 Query: 640 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 699 G Y + R G A W R A E + L ++ + ++ Sbjct: 660 LPGYYPD--VRPIPAARARLHLEQGRLDDARAWARDVAVAEVEHPGHL-DEYAQLTLVRL 716 Query: 700 LLGEFE---------PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 740 LL E E A L+ L +A + L L + Sbjct: 717 LLAEHESDGNPTHMAEALRRLDALEPDATRGGRDATLTDIARLREAARGR 766 >UniRef50_C1AXQ0 Putative serine/threonine protein kinase n=2 Tax=Corynebacterineae RepID=C1AXQ0_RHOOB Length = 1161 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 189/823 (22%), Positives = 322/823 (39%), Gaps = 15/823 (1%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDIGW 61 K P V R RL+ L + RL L+ +PAG+GK++L++QW + W Sbjct: 336 KFRPPTTTRRLVPRRRLITALRAGRDRRLTLVHAPAGFGKSSLVAQWRDDLVEAGTAVAW 395 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 ++D DN F S+L+ A+++ ++ + L L + Sbjct: 396 LTVDRDDNHLVWFLSHLVEAIRRVRPEVVGELGQALEEHGGTVERFVLTSLINRLHDSGE 455 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 L +VIDD+H IT+ ++M F + + +L +VV SR+ L ++ +RV D+L EI S Sbjct: 456 ALVVVIDDWHRITDAGPVDAMTFLLDNGCHHLKIVVASRSRAGLPLSRMRVLDELNEIDS 515 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 +LAF E++ F R+ P++ + ++ D GW ALQL +LS R+ + + Sbjct: 516 GELAFDFDESQNFLSDRVRVPLDDTDVEQLRDSTDGWIAALQLASLSLREAGSPENLIEQ 575 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 AG +A + +YL + VLD ++ F+L +++ + L + + G +GQ +LE++ Sbjct: 576 LRAGTDA--IGEYLAENVLDALEPDMLDFMLATSVPGKVCGDLASALAGVPDGQAKLEQV 633 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 + LFL R D +W+ YH LF L QR + + + ++HR A + + + EA+ Sbjct: 634 AARDLFLGRTGDDRQWYRYHHLFAQILHQRLERDHPGRITDLHRRAHDWFRERHLLREAV 693 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 H LAAG+ ++L L + S++S L + LP + + P+L L W Sbjct: 694 DHILAAGEPQRAVELLEEDDLYLLDRSQMSTLLCLIAKLPAELVASRPRLQLTIGWANCE 753 Query: 422 QHRYGEVNTLLARA-----EHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 R RA E+ + R + E + L+ + + L L Sbjct: 754 LQRLELAQAARTRALEQLDAGEMPERRAAELRVEADVLQGDIEATADRIEGVRDLVAECL 813 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 + + +A + V + + RQ+ + + Sbjct: 814 AQPAEYHPFVVSMAALIETYVDCYEFRFEDAYRRQSWAAPYHRQNTGPYSVAYGYCFAGL 873 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA-RS 595 F Q L A E +AF L+ E Q P + A++ + R+DEAE S Sbjct: 874 AKFEQLDLGGAMELYRRAFDLVREAANTQSPHARLTRALLAEVHYEQGRVDEAEELLNES 933 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS-DWISNANK 654 ++ + + RGD + A +L+ +A + Sbjct: 934 FDAAALGGAADFMIRHYCLGARIMAVRGDREAAARRLDEGARTAETFSLPRLRAAVDAER 993 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 VR+ G A R A A + + AQ G E A + Sbjct: 994 VRIGLPPGPGFVAVTHETRRTPADGIGLATAQLEEESAIRLLEAQGDPGAAERACEWAND 1053 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 + + LL W AGR +AQ LL A R I G Sbjct: 1054 WVRELDGTGRHRARLQAVRLLVACLWAAGRVEEAQAALLPAAVDCARHDLIRFLPDGGPN 1113 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDEN 816 + L L + N P L + + +L N+ + A Sbjct: 1114 VVAALSALTR-NDHPGLPRAFTEAVLAAANRPPASRGATAPAA 1155 >UniRef50_B2TCN8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2TCN8_BURPP Length = 900 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 211/905 (23%), Positives = 365/905 (40%), Gaps = 32/905 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 L+ +K S P + R LLA+L + RLAL+T AGYGKTTL++QW Sbjct: 9 LVSTKFSPPRIGAKYITRVDLLAQLQRKRHCRLALVTGSAGYGKTTLLAQWRKVCLKASA 68 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 ++ W +L D F++ L AA+Q+ G + + A++ + A + Sbjct: 69 EVAWLALTADDKSYADFSTALFAAMQRI--GISVATDLSLEVASAAAMDAAIAAIVEAAV 126 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 LYL+IDDY + P+ H+ M+ + P NL V+ SR P L ++ LR+ DQ++ Sbjct: 127 GLPKELYLMIDDYQYVEAPLAHKFMQKLVDQGPGNLHFVIGSRLTPPLSLSRLRMMDQIV 186 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSS-PIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 E+ S L F E + F D L I A E + I + GW + +QLI + R + Sbjct: 187 ELDSDGLPFDLAETRSFVDENLGPGKINADELTLIHELTGGWPSCIQLIIIMLRNRPDAR 246 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + +S L YL +EV+ + F + +I R + L VTG E+ Sbjct: 247 ATLGDLI--WRSSDLQAYLSEEVMAQLPAELSEFAVALSIFRRFSAPLAREVTGNEHAAD 304 Query: 297 RLEEIERQGLFLQRMDDTGE--WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 LE +E + L + R+D W+ +HPLFG FL R + E+HR A+ + A Sbjct: 305 LLERMEDENLLITRVDSDDRTAWYRFHPLFGEFLATRLARREGDAVRELHRRASRWFAAH 364 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G +EA+ HA A D ++ A + ++ L L+ LP +LL + +L+ + Sbjct: 365 GLLAEAVRHASAGEDVEFAASVIERAAPATWSVEYLGPTLHLLERLPEQTLLSHQRLLFI 424 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + R + LA + + + + + A +A + L + Sbjct: 425 ACLTVALTTRPAKAKAWLAHLQANAAS-ADPEIASSLPLVHAAIAFQHDDTQRMIDLLEP 483 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 + + + + + L G T + L + AL + + Sbjct: 484 HRGDTF-DNPFLQYLLVAELCAAYAAAGRFTEARRLFN-LHPVPPAERNNDMALVAQATR 541 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 + + +G + A + + A + R+D A + Sbjct: 542 ASTILLEGNAREAERESAGLLTRSVQAVGRHSISANICASVLADACYELDRIDVARETIA 601 Query: 595 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 + +L S P + + L + D A + + L + + +++ Sbjct: 602 NRRGLLHSSGPDVLIHTSLCRARLDLLQESADAALDFVQQQTAHLRSMR-QIRAVAHMLA 660 Query: 655 VRVIYWQMTGDKAAAAN---WLRHTAKPEFANNHFLQG--QWRNIARAQILLGEF-EPAE 708 +V + D A A L A+ A +ARA++L + E A Sbjct: 661 EQVKILLLKHDHAGALETLTLLDEIAEAHTAEQGSKAEIPAIAALARARVLRHDQPEEAL 720 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 L+ +A + LL + + SDAQ + A++ A R G + FV Sbjct: 721 RALQITRRHAEAFGRGRLAALADLLSAIVLAEQRSDSDAQACFVRAVEAAQRLGLVRTFV 780 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 EG A + L ++++ L A +L + D E L + Sbjct: 781 DEGAAAGRLLAKVVREGKLEGATLQYATGLLEKF----------PDSAISEGLAGNARRA 830 Query: 829 ELIRTSP-LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 + P LTQRE ++L L+ SN++IA L++ T+K ++RN++ KLGV+ R DA+ Sbjct: 831 GASKLQPVLTQRELEILSLVGQAMSNKRIALALDITIETVKWNLRNIFSKLGVSSRYDAM 890 Query: 888 QHAQQ 892 A++ Sbjct: 891 VWARK 895 >UniRef50_C0GFP5 Transcriptional activator domain protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFP5_9FIRM Length = 1123 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 190/828 (22%), Positives = 329/828 (39%), Gaps = 17/828 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 ++ SKL P + R RLL K + + +L LI++PAGYGKT LISQ+A K + Sbjct: 7 ILASKLLAPRTGVRLLARPRLLEKFTDYQSRKLTLISAPAGYGKTVLISQFAGQVKAQVV 66 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYA--SLTSLFAQLFIEL-A 117 WY LD DN F +L+A +++ G + ++ L + L L A Sbjct: 67 WYQLDHFDNDLALFVQHLLAGIEKHLPGLGVEIMDLVERGTDLQKELRRITTALVNSLTA 126 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + LVIDDYH I +H M + + P+ + +V+ SR LP L + L++ + Sbjct: 127 NLEEEMILVIDDYHAIEEEAVHGFMEQLLEYLPDKVHMVLSSRTLPPLHLGRLKIAGLME 186 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI + L F E F + P+ S + ++ GWA AL+L LS Sbjct: 187 EINLEDLRFRTDEISGFLLAENNEPVSGETISYLDEETGGWAAALRLAGLSINSVKVRQK 246 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 SARR + + YL EVL N+ F+ +A+L M + ++ Sbjct: 247 ASARR-TNSHRKEIYHYLASEVLQNLPQDLADFVQSTAVLDFMTPQICDLFLDRDDSYEV 305 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L+ +E Q LF G+ + YH LF +FL R + + + A + ++ G+P Sbjct: 306 LDSLEEQNLFAVV--GEGDVYRYHHLFRDFLLSRL----GEKKSNLLQKAGQCYLQAGYP 359 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 A+ L AGD + N A ++ HS + L+++P D E+P+++L + Sbjct: 360 VRAVECFLGAGDFGRAVHAVENVAGTMLLHSRWQTVRRWLQSIPEDIKQEHPKMLLFEGV 419 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 ++ + R + L+ +A + + + A++ + G+ ++ ++ + L Sbjct: 420 VLLNSGRLEQAEGLIRQAAEALAQTGDQDGIFQTKLYLARILRSRGDYGQSMQMLEEILP 479 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 + T VL +GEL +++ L+ Q +A Q H A + + EI Sbjct: 480 QFAGRPVAEWYDMTMEYSLVLGMRGELDKAVHLLNQALTLAEQEGEVHIAAQLVERLGEI 539 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 F +G A +A ++ EQ + L A + W LD+A A++ + Sbjct: 540 HFIKGDYSKAVTVHHRAAEMAPEQERQSF----LLRDSIATIYHDWGDLDQALEYAQNSL 595 Query: 598 EVLSSYQPQQQLQ-CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 + + L L L A G D A R +L G + + + + Sbjct: 596 KAKEQLGMTEALPYALQQLAVVQAALGQFDVAEENFMRSIDLAGQLGGEIFFQARSKALY 655 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFANNHF-LQGQWRNIARAQILLGEFEPAEIVLEELN 715 + G A + + + F + A I GE + +LE+ Sbjct: 656 GRFLGSRGRLEEARQLVDEALEMARGQSQFIYAVCLQAAAPVFIWQGEPQKGAAMLEQAL 715 Query: 716 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 775 + + L Q G + AQ + L+LA I FV E M Sbjct: 716 SVLEQIGAKYSICVTCAFLALAKRQLGEDAAAQNYAVRCLELAAPESCIQLFVANPEMML 775 Query: 776 QQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 +R ++ PE + +R+ + + H D R++ Sbjct: 776 PVVRVGLEKGLAPEFVKEIIRRMGEQAAEMLAELAVHPDPAVRRRVIA 823 >UniRef50_A4XVC8 Regulatory protein, LuxR n=7 Tax=Pseudomonas aeruginosa group RepID=A4XVC8_PSEMY Length = 907 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 197/914 (21%), Positives = 355/914 (38%), Gaps = 42/914 (4%) Query: 2 LIPSKLSRPVR-LDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----K 56 L+ +KL + R LL +L A RL ++++PAG+GK+T++SQ Sbjct: 14 LLRTKLYPAHGEGAPLLERSALLERLLAAREQRLIVLSAPAGFGKSTVLSQLRRRLQEHG 73 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W S DE D++ RF YL+AA++ A G + + Q L ++ +L Sbjct: 74 ARVAWLSCDEADSEPARFLQYLVAAIESACPGFGSSASALLQGEISWPLEAVIDAFLDDL 133 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 LYL++DD+H I +P + + R+ I P+++ LVV +R P+ + Sbjct: 134 KALPGELYLMLDDFHRIRHPSLGQGARYLIERLPKHVRLVVSTRYQPRFLDEPPSLGGWA 193 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 + ++ L + E + ++ AE ++ GW T A Sbjct: 194 FWLRAEDLRLSRGETAAYLRTIKQLALDEAELDQLHARTEGWIT----ALHLAALALPRQ 249 Query: 237 HKSARRLAGINA--SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 A LAG++ +++DYL ++V+ ++ A + FL ++++L N L +TG +G Sbjct: 250 RDRAAFLAGLSGAERNIADYLAEDVVASLPEAQQLFLDQTSVLDEFNAELCNALTGRRDG 309 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 + L ++ + LF+ +D+ GEWF YH LF FL+ R + + AAA A+ Sbjct: 310 RDMLRRLQSEQLFVIPLDEQGEWFRYHHLFAEFLQGRLAKR--GDPAHLLHAAARWCEAR 367 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 ++I +AL A D ++L L + + + LK +P + E P + Sbjct: 368 DLADKSIKYALRARDYGFAAELLERQGARLIAGNRVYGILAILKDIPPVVIAEQPVFQIF 427 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMH-------AEFNALRAQVAINDGNPDE 467 AW + + ++ E L+ + R MH A L+A V + + Sbjct: 428 YAWQLAFEQKFAESEALIEEVSTRLTQGRGKGMHFGLIELLAAAQVLKALVLLYQDKLEA 487 Query: 468 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 527 ++A L +P R V GE + + + RQ + + Sbjct: 488 CLKVAGHWLALVPQNQPVFRASLACVQAAAFALLGEFGEAAKAIAVARENLRQCESEYLH 547 Query: 528 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 + + + ++ I G L+ E A + + + + L A LL+ R Sbjct: 548 VMASLIEALICKEYGELERGRALAEAARARVEQVFGRRSRVGGPLGLAYADLLYEQDRHG 607 Query: 588 EAEASARSGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNR-LENLLGNGKYH 645 A P + + + ++ + G + +L+ L L G G Sbjct: 608 AILAELPLATTWRDVATPVELISRGKLVMARARFFAGAAEQGLEELDEWLAGLQGPGYER 667 Query: 646 SDWISNANKVRVIYWQMTGDKA-AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG-- 702 I KV+ + W ++A L + +++A++ L Sbjct: 668 VFAIGMGCKVQFLLWLRRPNEAQRIYLQLERHLATLPIERYGDAHTALALSQARLALSER 727 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 + A+ LE + R LLL+ YW+ G A +L L+ A + G Sbjct: 728 RVDKAQASLEACLAKQGAEHQRDRRLRLSLLLSVAYWRKGNSEKAFALLRATLEEAWQRG 787 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 + F + + +LRE + F+EN Sbjct: 788 YRRLFQDDALWLLPLWDAWCSAEPKCAAAWQGLAELLREQCRRMAIDPESFEEN------ 841 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 ++ RE ++L L+ +G SN IA + ++ TIK H+ NL+ KLGV Sbjct: 842 -----------QDVSHREREILRLVAAGLSNRDIAQTVHLSEATIKWHLHNLFSKLGVRS 890 Query: 883 RQDAVQHAQQLLKM 896 R AV + L + Sbjct: 891 RTQAVLKGKSLGLL 904 >UniRef50_Q0S014 Transcriptional regulator, MalT family protein n=7 Tax=Rhodococcus RepID=Q0S014_RHOSR Length = 1180 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 186/807 (23%), Positives = 312/807 (38%), Gaps = 28/807 (3%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKNDI 59 +K P V R RL +L A RL LI +PAG+GK+TL +QW A + Sbjct: 342 STKYRPPTPSRALVERGRLAERLHDAARRRLILIHAPAGFGKSTLAAQWRRTLADDGVAV 401 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W S+D DN F S+LI +++ A + S + L E+ Sbjct: 402 AWLSIDADDNNVVWFLSHLIESIRVVRPDLAAELGQILDDHGDESDRFVLTALINEIHTS 461 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 PL +VIDD+HL+T+P +M F + + +L ++V SR+ L + +RVRD+L+EI Sbjct: 462 RDPLTVVIDDWHLVTDPATIAAMSFLLDNGCHHLQVMVTSRSQSGLPLGRMRVRDELVEI 521 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 S L F +E++QF ++ S + D GW ALQL LS R A Sbjct: 522 DSTALRFDEEESRQFLVDVGGLALDRDAISALRDSTEGWVAALQLATLSLRGRDDPAEFI 581 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A ++ YL + VL ++ F+L +++ + L + G GQ LE Sbjct: 582 AH--LSGRHRGIAGYLAENVLSALEPEILDFMLATSVTERLCADLAETLAGVAGGQGLLE 639 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 +IE + LFL+ +DD EWF YH LF +FLR+R Q + + + ++HR A+ + A SE Sbjct: 640 QIEERDLFLRALDDDREWFRYHHLFADFLRRRLQRDQPSRIADLHRTASRWFAAHELLSE 699 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ +LAA D +++ + ++L S+++ + + L + P L + AW Sbjct: 700 AVDQSLAAADPDQAAELVDSRGFALIERSQMATVLGLIGKLLPAQIERRPHLQIAAAWAH 759 Query: 420 QSQ-HRYGEVNTLLA-----RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 HR V++ L A + AE + ++A + D+ L Sbjct: 760 ILLHHRPTIVDSALDSVRVGLAALPESGNATAALRAEASLVQAAADLFRDRIDDLTELIS 819 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 L ++ + +V + + + + + ++ Sbjct: 820 DCLAREKTLRPFALAGSANVASYEAIHRFDFEAAKRWQEWAAPFHARTSGPFSVIYGYCL 879 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 +Q A + KA+ L + + + L+ LD+AE Sbjct: 880 SGLAESELLNVQEAEDYYRKAYDLARRSGGHRSYTTRLAGTMLGESLYEQGLLDDAERLL 939 Query: 594 RSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 E+ S L + RGDL A +L+ + + Sbjct: 940 DECSELGSEGGVVDFMLVTFGTGSRIKALRGDLAAAAHRLDEGTQI-ATALSLPRLAARI 998 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR---------AQILLGE 703 R + G A +H + G I + LL Sbjct: 999 ENERTRWRIAPGQYPQAMTMASALPDTAAPTSHPVNGVNGVIEVTAELNEDSAIRRLLAS 1058 Query: 704 FEP-----AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 758 +P A E+L A +L R LL + + DA L+ + Sbjct: 1059 GDPGDAALAHRRAEQLLARATALHRPRATLRASLLHVVTTRRVQGEHDALAALVPLVAQC 1118 Query: 759 NRTGFISHFVIEGEAMAQQLRQLIQLN 785 +R G I EG A+ + + L++L+ Sbjct: 1119 SRLGLIRPLCDEGPALTRLVATLVELH 1145 >UniRef50_Q2SIT0 ATP-dependent transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIT0_HAHCH Length = 894 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 202/907 (22%), Positives = 363/907 (40%), Gaps = 25/907 (2%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI- 59 +++ +KL D + R+RLL ++ + R + +PAG+GK+TL QW + + Sbjct: 2 IVLETKLFPLRLDDSLLTRQRLLRRIGAPGSARFIGLVAPAGFGKSTLARQWTQSHHALT 61 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA-E 118 W SLD DN F Y++ +++ A Q+ +A+ L L +L Sbjct: 62 SWISLDPADNSASTFWGYVVEGLRRNGLEDVAELRARLQETAHANARVLVTALINQLHLH 121 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 LV+DD H I N I + + + + P N TL+V SRN P +A +V+ Sbjct: 122 QDRHFVLVLDDLHHIANKDILDGLTYLVDFAPANFTLIVTSRNEPSFPLARWKVKRYARL 181 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLI--ALSARQNTHSA 236 + S L F +E F L + ++R+ GWA ALQL+ A R + + Sbjct: 182 LYSADLVFDSREVADLFALALDVKVSPEAAARVVGSTGGWAAALQLLSQADLKRADGALS 241 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 ++ + + DY+ EVLD++ R F+L+ A + AL V G + Sbjct: 242 NEKFEQALAQAKKEIDDYVAQEVLDDLPTHLREFILEMAGAARFDVALCDLVRGAHDSHQ 301 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L+E+ + LFL +DD G+WF +H LF + + + R ++ + + Sbjct: 302 ILQELAARNLFLIPLDDAGQWFRFHELFRDGALHYLRQRQPNVHLQHCRQVVQASLERRL 361 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 E++ + +L+ L N L + E L P + L ++ +L LL+ Sbjct: 362 YLESVQLIMHIQAWDLLQSTLENIGNQLVRQGYHLYIIEWLNDAPQELLNQSLRLQLLKI 421 Query: 417 WLMQSQHRYGEVNTLLARA-EHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 W + +++ + L+ A +H + ++DT+ E L A A + + A L + Sbjct: 422 WCLLYDNQFAAIPDLVEAAKKHPLLPEQDDTVRHELRLLEAYAARSRKDIQTASALTQSV 481 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 L++L + +A LG + G L ++A +++ + + + L SL Sbjct: 482 LQDLQQINAPIKSLAYFGLGNDYYGLGRLDDAMAALKEAVTLGKLEQRFSTVLSSLGLLL 541 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQH---LEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 I+ +G A + + H E + +L + A + AE Sbjct: 542 WIMQIKGDFLHAINLFRQTELWVQSYHKDGPEPNIVSCWLNSSLVLIHCALNNPEHAERF 601 Query: 593 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL-ENLLGNGKYHSDWISN 651 + + + + +PQQ+L + + GD A + E L N + + + Sbjct: 602 LKPMLPFVDNAEPQQKLITYYTWAEFNRHCGDYSQALRHYEQAREQLEHNQRELAAFAPP 661 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE--PAEI 709 ++ GD A + +G A+A+ L + + + Sbjct: 662 VMAGKLHCLLDKGDMLHAESVYAQILSKITTETSPFEGMENLSAQARYFLHKQQWPNLQE 721 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 E + A S + LL + A+R+L +AL L F++ F+ Sbjct: 722 TSELIQALAESHNSSRYQAQAKLLHAAALAGQNQPEAARRLLSEALALGESNDFVAMFLA 781 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPE 829 + + L T + L + + E L+ P Sbjct: 782 DEACLKPLYANLNVAETSQAYLEKLQINPLPQKPAPAQE----------EATLSQPG--- 828 Query: 830 LIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 L++RE +VL LIY G N++IA L +A T+K HIRN+Y K+G A R +A+ Sbjct: 829 -GLLEELSKREMEVLTLIYEGLPNKKIADRLFLAPATVKAHIRNIYGKIGAASRTEALAR 887 Query: 890 AQQLLKM 896 A+ L + Sbjct: 888 ARHLGLL 894 >UniRef50_A4XVC9 Regulatory protein, LuxR n=11 Tax=Bacteria RepID=A4XVC9_PSEMY Length = 904 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 216/910 (23%), Positives = 374/910 (41%), Gaps = 40/910 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND--- 58 L+ SKLS P + R ++ A L + RL L ++PAG+GKTT ++ A+ + Sbjct: 12 LLRSKLSPPQAASDYLARPQVEAALLAHPHARLVLFSAPAGFGKTTALAMLASERRHAGA 71 Query: 59 -IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SL GD++ RF LI A+ +A G + + ++ L ++LA Sbjct: 72 AVAWLSLGPGDDEPVRFFQQLIDALGRALPGLGEDALGYLRNTMRVPVEAVMESLLVDLA 131 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + PL LV+DD HLI + + ++ ++ P N TL + SR+ P L +A LR + QLL Sbjct: 132 QRQEPLLLVLDDLHLIQDAELLAALNRLVKLAPPNFTLAIGSRSQPPLSLATLRAKGQLL 191 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+GS++L +EA+ + + R ++ + + GW + L +L R Sbjct: 192 ELGSEELRLNPEEARSYLE-RSGLQLDGEAFAALYSHTEGWMIGMHLASLWLRHQPQPVQ 250 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + A G + + DYL+ V + + + LL + + ++ L +TG +GQ Sbjct: 251 QMAE--MGADQGAVGDYLLRSVFEQLPQERQELLLALGVAQQLSGDLANALTGRHDGQQL 308 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 LEE+E LFL +D +W+ +H LF FLR R + ++H A+ + Sbjct: 309 LEELEAMQLFLLPLDRERQWYRFHNLFAEFLRTRLRERDPERFKQLHFNASLWFTNHHMQ 368 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 + AI HA A DA ML +L L N +L L+ + +P P LVL+ W Sbjct: 369 NLAIEHACLAEDAEMLAALLDGCGLELINRGQLHLIHSWRQHVPDAIAERYPMLVLVDVW 428 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE----FNALRAQVAINDGNPDEAERLAK 473 ++ E N LL + +E A++A +A+ + D LA+ Sbjct: 429 SRAAELGLAEANRLLDELLQRWGQGGDSGPLSEQMFAALAVKAVIAMQKDDLDTCVSLAR 488 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 +L + + +V G+ ++ L+ +Q + + + Sbjct: 489 RIEAQLGQHTAFLEVAILTVGALAHVMLGQAEQARKLLALAQQRNHFLEGRYLDMQLANV 548 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 + + QG ++ A E+ + EQ A + + RLD Sbjct: 549 EILLCLEQGRIKQAQLLFEQLRTRMMPWFGEQSRALVLPAISDALIAYHQGRLDGLPERL 608 Query: 594 RSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI-SN 651 R + + P Q + L + A + L ++NL + + Sbjct: 609 RWALAAVDVINPIDLYAQAMLCLARVQRLHDAPKEAAATLVLMQNLAARNHSWRFYAQAV 668 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW--------RNIARAQILLGE 703 ++ +I + D++ A + H+ Q ++ R Q G Sbjct: 669 GEEIALILQEPAADRSRRAEQRLKSVDWAKLAAHYKQRKFNPVLWVLGLTRIRLQQARGH 728 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 + A + +L ++ R LL Y + G + AQ +L+ L A R Sbjct: 729 YSEALHEITQLRSQLQNDWHGLHRLRLDLLAALSYQRLGYQERAQSLLVQCLIGAEREEA 788 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 S F+ EGEA+ Q L+QL P L+ ++ Q R +E Sbjct: 789 RSLFIEEGEAIRQLLQQLESAERQPALQGFLRSLLVIWPGQESRQALDVLEE-------- 840 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 LT+RE +V+ L G SNE+I +L +A T+K H+ N+Y+KL V +R Sbjct: 841 -----------GLTEREREVVCLAAKGLSNEEIGQQLSLALGTVKWHLHNIYEKLKVRNR 889 Query: 884 QDAVQHAQQL 893 A++ A++L Sbjct: 890 TQAIRRAREL 899 >UniRef50_A7HS86 Regulatory protein LuxR n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HS86_PARL1 Length = 921 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 205/898 (22%), Positives = 354/898 (39%), Gaps = 31/898 (3%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKNDIGWYSLDE 66 ++ V+R+ L +L RL ++ +PAG+GKTTL+ Q+ A + + W L+ Sbjct: 34 AGANNLVLRKHQLDRLKNHTGVRLIVVQAPAGFGKTTLLRQYCAWREAQGSRVAWLHLEA 93 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 RF + AV AI E + ++ + + +V Sbjct: 94 HYADPSRFLRLVCEAVA------GAIEEESPSAALPDNSSASIQDFLRVVRGTDVGIVVV 147 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +D++ + + + +R P+N+ L + +R +P + + L++R+Q + + + L F Sbjct: 148 VDNFEQAAHSGMEAVIAQLVRVLPQNVQLCIGTRVIPAINLPRLQLREQAVVVNVEGLRF 207 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 E +FF I E + GW ALQ I LS R T A Sbjct: 208 RANETTEFFREFR--DISEEELDKYQVATDGWPAALQCIRLSMRGRTGRAKPLP---ISG 262 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 L D+L +V +N+ + LL + + + L+ ++G +G+ L EIE GL Sbjct: 263 VTPDLIDFLATDVFENLSGDIQRALLDACMPERICPELLESISGRPDGEGSLGEIEHLGL 322 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELA-AELPEIHRAAAESWMAQGFPSEAIHHAL 365 FL +D WF +H +F L R + EL+ AE+ HR AE + A GF EAI H + Sbjct: 323 FLTPVDMDHRWFRFHTVFRQVLLTRLRRELSEAEILARHRKIAEWYAAHGFSEEAILHYI 382 Query: 366 AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRY 425 A D +L L N L L+ L D + ++ + + Sbjct: 383 EATDQEAAAALLNAIIGRLVNEERLDLIVRYTDRLSPDVIQNYEHILNAAIVAYGFRREF 442 Query: 426 GEVNTL--LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW 483 + N + L RA E ++ ++ A E R A+LAL+ L Sbjct: 443 IKANRIIALRRAALERENASKEAWGVHHYTRIFTTA-AQDQVVEIGRTAQLALDHLADAP 501 Query: 484 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 543 VA + L+ + + + Q + + + + +L QG Sbjct: 502 GLEYAVALNARAYWLYLNSKFEEAREALAQARALHDEAHNLFGLSYCEWIYANVLSTQGR 561 Query: 544 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 603 + A ++ ++A +E + + A+ L+ + EAE + +L Sbjct: 562 NEEALKSLKQAQIHNDEGATASVTAGSVIAACLAETLYEKNCIAEAEMLLHDHLLLLEQQ 621 Query: 604 QPQQQLQ-CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 662 + L + + ++ RG+ A L+R+ LG+ + A V + Sbjct: 622 AIVEPLALAFLTMARVAMLRGEEREAEEVLDRM-MYLGHRYNLRRLVIYAKAELVRQATL 680 Query: 663 TGDKAAAANWLRHTAKPEFANNHFL-------QGQWRNIARAQILLGEFEPAEIVLEELN 715 GD A + E L + Q AR IL G A +L+ Sbjct: 681 AGDLDKARTRFASMGQGENDGEDDLVYFAGETEAQTITEARLLILAGRHADARALLQPAA 740 Query: 716 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 775 ARS R M + LLL G+ + A+R L++AL++ FI + EG Sbjct: 741 RKARSQRRMRRFLKLNLLLAISLNVEGQVNSARRALIEALQVGAPDQFIRLILDEGPQAL 800 Query: 776 QQLRQL-IQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 + L + L P+L Q + + +FA N P L Sbjct: 801 RLLHEARAALPKFPDLPQKDSVSAYLDRLLSEAGEFAPALMPDAGHDENDDISPHL--LE 858 Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 LT RE ++L L+ +G+SN+ +A L ++ T+K H+RN+++KL + +R AV A+ Sbjct: 859 ELTDREREILRLVSNGFSNKALADRLSLSTNTVKWHLRNIFEKLQIGNRMQAVSVARH 916 >UniRef50_C7RL93 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RL93_9PROT Length = 904 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 226/916 (24%), Positives = 371/916 (40%), Gaps = 45/916 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG- 60 ++ SKL RP + V R LL L + L L+++PAGYGKT+L+ W G++ Sbjct: 12 IVRSKLRRPRVVADFVARSELLRLLDAGSELPLTLLSAPAGYGKTSLLVHWLEGRDAAAA 71 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLD D++ FASY +AA++ CA SL +L L L Sbjct: 72 WLSLDRDDSEPMIFASYFVAALRSVFPAACAETLACLNASPPPSLATLAGSLSNALEALP 131 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 +PL LV+D Y + +P + + H L LV+ +R P+L + LRVR+ ++EI Sbjct: 132 APLVLVLDGYQHVDSPSTQALLDRLLAHPASGLRLVISTRQDPRLSLGALRVREAMVEIR 191 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 L F + + + + + + GW ++L AL+ R +A A Sbjct: 192 VPDLQFDERASATLIERCAGRAVSGEDLLHLQACTEGWPVGVRLAALALRNGDDAAAGLA 251 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG------ 294 R L+G + L Y V+E+L + T LL+++IL L V E Sbjct: 252 RSLSG-ESPQLQQYFVEELLADQTAGTVDCLLRTSILDRFCAPLCDAVLWEGAALGETLV 310 Query: 295 -QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWEL-AAELPEIHRAAAESWM 352 Q L + + +DD W+ Y LF FL+++ A++ E+H AA Sbjct: 311 SQALLRVVSSGAMLCTVIDDGRHWYRYRRLFREFLQRQLSLRCTPADIAELHHRAAAWLA 370 Query: 353 AQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 QG EAI HALA +L H L + L+ L+ LP D++ +P+L+ Sbjct: 371 TQGLLEEAIPHALAGDGGAAAGQLLARHRNLLLGREQRWRLDRCLRLLPPDTVEGDPELL 430 Query: 413 LLQAWLMQSQHRYGEVNTLLARAEHEIKDI-------REDTMHAEFNALRAQVAINDGNP 465 +++AWLM Q R+ E++ ++ R E I + + ALR+ A +G Sbjct: 431 VMKAWLMYHQGRHVEISAVVDRIEALIDSTVAGIQLPGSEALRGHLLALRSLHAYLEGQA 490 Query: 466 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 525 A LA+ AL+ LP ++ + A ++L G+L + ++Q A + Sbjct: 491 GSAVALAEQALQRLPVACVHAHVTAQALLAGGRQAAGDLAGARDGIRQALAHA-AGPIDA 549 Query: 526 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 585 + I + L T ++ + L + + + + + Sbjct: 550 CQAPLVATLCLIDWMAADLSALQWTADQYYNLGDARFASEAN-AALGRYFLGLVQYQRNE 608 Query: 586 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 645 L AEA+ + + + + + +L A G D AR+ ++ + L Sbjct: 609 LSLAEATLLPALAPEQAPRLGYRTEMSFLLAAVYQALGQADRARAIVDAVCERLAEKADL 668 Query: 646 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAK-PEFANNHFLQGQWRNIARAQILLGEF 704 A + G A A +W R P F +AR I G Sbjct: 669 PALF-RARACQADLALRQGRLAEAQDWARSFDPGPVQFVYRFFSAPHLTLARVWIAEGSD 727 Query: 705 E---PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 E A +L+ L S + L L L L + G +S A L AL L Sbjct: 728 ESRKQAARLLQLLEAQLTSRHNVRFLAEALALQALLEYALGDESAAVERLGRALALTRTG 787 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 GFI FV G+ + + L+ L A +IL +N Sbjct: 788 GFIRLFVDLGQELVKPLKLLEASIGN----ARYAGQILAALNDDWLVTAG---------- 833 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 + LT+RE ++L L+ SN +I+ EL ++ T+K H +N+Y+KL + Sbjct: 834 -------RQQVGADLTRRELKILKLLAVRLSNIEISEELCISRATVKRHTQNIYRKLRAS 886 Query: 882 HRQDAVQHAQQLLKMM 897 R++AV A+ L ++ Sbjct: 887 SRREAVVRARTLNILV 902 >UniRef50_C1BC55 Putative serine/threonine protein kinase n=2 Tax=Rhodococcus opacus B4 RepID=C1BC55_RHOOB Length = 1154 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 186/821 (22%), Positives = 305/821 (37%), Gaps = 19/821 (2%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDI 59 +K P VVR RL+ L + RL LI +PAG+GK+TL SQW + Sbjct: 336 STKFRPPTSTRPLVVRRRLIDTLQSGAHRRLVLIHAPAGFGKSTLASQWRGVLVEDGASV 395 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W S+D DN F ++L+ AV+Q + + + + + L E+ Sbjct: 396 AWLSVDPDDNNVVWFLAHLVEAVRQVRPALARELGQILEDHPPDAARYVLSSLIDEIHSS 455 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L +VIDD+H ++ E+M F + H +L LVV SR L ++ +RV D+L+EI Sbjct: 456 GERLVVVIDDWHRVSADETIEAMDFLLDHGCHHLQLVVTSRTQAGLPLSRMRVSDELVEI 515 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 L F EAK F + +E + + GWA ALQL +LS R A + Sbjct: 516 DPDALRFDASEAKAFLLDVNGLRLSESEVTELAIATDGWAAALQLASLSLRGRDDPA-EF 574 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 R L+G + + + +YLV VL ++ FL+ +AI + L ++TG ++GQ LE Sbjct: 575 IRHLSGRHHA-IGEYLVANVLHTLEPHLLDFLMATAIAEKVCGDLAAKLTGLQSGQALLE 633 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 E E + LFL +DD EWF YH LF FL++R + A E+H A+ + G SE Sbjct: 634 EAEGRDLFLTSIDDDKEWFRYHHLFAEFLQRRLERVDPARARELHLTASTWFEDHGMLSE 693 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ H +AA D ++ + L +S ++ L + LP P+L L AW Sbjct: 694 AVDHVMAAKDFDRAAHLVESGGMELIENSRMATLLGLVAKLPPAVAYNRPRLQLTVAWGN 753 Query: 420 QSQHRYGEVNTLLARAEHEIKDI-----REDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 R + L R + + + E N +RA + + + L Sbjct: 754 VLLQRPKVMQLALDRLSSSLDSESMTEWEQRAIAREANLVRAVAKVLADQSEGVQDLIDD 813 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 L + + A+ V + E + + Q A++ Sbjct: 814 ILRDPDGLRPFVASAASDVASFLAIHNFEFAAARRWQDWARRYHEQTVGPFSAVYGHCMA 873 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 + + A A L + + + +L+ +D AE Sbjct: 874 GVAAYEVLDVGEAENIFHTALALARQTGMHSHA-ARLAGALLGSVLYDKGAIDGAEELLD 932 Query: 595 SGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 E+ L + + + RGD D+A +L + + Sbjct: 933 RSNELGPEGGVVDIMLATYGVGSRIKVLRGDRDSATIRLEEGARIAEK-LHLPRLAKRIV 991 Query: 654 KVRVIYWQ-----MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 R+ + A ++ F + + A E A Sbjct: 992 NERIRAGLPIDPSLEARLKDAGPREEMENGIAEVSSQFDEDSTIMLLLADRSDASIEAAL 1051 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 L E+ + + L + LLL AGR +A+R L G + Sbjct: 1052 ARGRALVESVKKQKRPRALMVSTLLLVHCLASAGRMDEAKRTLAPVASQCAVLGLPRLLL 1111 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHK 809 G + L QL++ + R + + Sbjct: 1112 DGGAEIPHVLSQLLEDVRSGDRWLRRWPDVTASFLTDAMGR 1152 >UniRef50_Q397N7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Burkholderia sp. 383 RepID=Q397N7_BURS3 Length = 889 Score = 471 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 202/899 (22%), Positives = 354/899 (39%), Gaps = 51/899 (5%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDIGW 61 K S P +VR LL +++ + ++ +P G GK+TL+ Q A + IGW Sbjct: 25 KFSPPAARRGAIVRHALLERVTRLGVPHVVILHAPLGSGKSTLLRQIMEIGTAKRWTIGW 84 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 +LDE DN RF +Y IA V Q A ++ A+ ++ + + Sbjct: 85 LTLDENDNDPRRFETYFIALVTQMVADAGGP----APEQSPATTDNMIDWVLDRFGQIPG 140 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P+ L IDD I +P I +R +R P + + SRNLP +G++ L V ++ L + Sbjct: 141 PIGLCIDDLQWIRDPAILRFLRDLLRALPGRCRIYIGSRNLPDIGVSTLLVAEEALVLRM 200 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 + L F+ E+ +F ++A +S + GW LQL L+ + + + Sbjct: 201 EDLRFSPAESVEFMTASDDEALDAEIASFVQARTEGWPAGLQLFKLALARG--NPWHTVD 258 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 + L YL + L + FLLK+++LR +N +L VTG + L+ + Sbjct: 259 EMRDCGPLELVRYLSENTLSLQPPDAQVFLLKTSLLRRLNGSLCAEVTGAHHADAVLQRL 318 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 E+ GLFL+ +D W+ YH LF FL +R + + ++HR AA ++ G P EA+ Sbjct: 319 EQDGLFLEALDGNPGWYRYHSLFARFLSERLGQDDPDGVLDVHRRAAHWYVRHGVPEEAM 378 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 +HA+ A + + L A L +EL+ + LP + +L N L + AW + Sbjct: 379 YHAVEAREYALAVRTLDEWASRLIAGAELATVAYWFDRLPLNEVLGNRSLAIKVAWALVF 438 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 R + LL+ + E + +D + + A + + + A RLA + + P Sbjct: 439 LRRGSPTHPLLSYLD-ETRAREQDGATHNPDVVLAMATMFNNDLRGAARLANIPVLHQPA 497 Query: 482 GWF---YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 + A ++L ++ ++L + + Sbjct: 498 RDIFEAFELGAAANLLTFSAMATWHEEDIHHMLVLANSHNDHAQAAFSQGYTLALRCILQ 557 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS-GI 597 G + A E ++ + L R + LD E A Sbjct: 558 VTSGQPRLATEAPRATSGTRPWPYVNRGMAAVALAASRIWACYEADALDIGERLATQFED 617 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 E+ + P+ + + + ARG + AR L+ LE L ++ S R+ Sbjct: 618 EIALAAVPEFIALSMVSIARIHAARGRMIQARDTLDTLERLSFQSQW-SGVREMIAWERL 676 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNH---FLQGQWRNIARAQILLGEFEPAEIVLEEL 714 + +GD A L+H ++ + +I L F EL Sbjct: 677 YFAGRSGDAARVDALLQHVTDDASPSDPVWIPITEMLSGRLLGRIRLALFRQQLDRAGEL 736 Query: 715 NENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 + A ++ + +L + + G A R L + A+ G + EG Sbjct: 737 LKAALAITPARPLLSVKLHVLQALVQHRQGHTRLALRTLQGVRETASAGGCRRALLDEGA 796 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 + L +Q + H + +R P Sbjct: 797 ELVALL------------------------DQAPDAEMPHTAQASEQR------SPTAAW 826 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 L+QRE ++L L+ SG SN +I+ +L ++ T+K H++N+Y KL V +R A+ AQ Sbjct: 827 YGALSQREQEILRLLCSGASNREISEKLFLSENTVKFHLKNVYLKLDVKNRAQAILKAQ 885 >UniRef50_A9AZG3 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AZG3_HERA2 Length = 860 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 223/898 (24%), Positives = 351/898 (39%), Gaps = 53/898 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA--GKNDI 59 LI +KL P + V R RL +L N RL LI++PAG+GKTTL+S W + Sbjct: 4 LIQTKLVVPPPRERVVKRSRLYQRLDAGRNQRLTLISAPAGFGKTTLVSAWLHITKQQHC 63 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W +L+ DN RFA YL Q + + L ++ L +L E Sbjct: 64 VWLTLNSHDNDPLRFAQYLQQGFQAQLPQFNWQWLELLG---HQVLINVVTTLINQLHEQ 120 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 LV+DDY +I +PVIHE++ I H P L +V+ R P L +A R R+ L + Sbjct: 121 TEHWVLVLDDYQMIDHPVIHEALTMLIEHCPPQLHIVLTCRQQPALPLARWRARNWLTTV 180 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 G L FT E +F + + S++ +GW LQL AL+ + H Sbjct: 181 GVADLRFTDYEGGEFLRDVMHVRLNQQIESQVLHQSAGWIAGLQLAALALSEAPSPEH-G 239 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRV-TGEENGQMRL 298 R L AS +S YL++EV + + LL A L N +L + E G +L Sbjct: 240 LRALNSGQASDISVYLLEEVFQQQPTSIQQALLALAPLDRFNRSLADFMHQQCELGPNQL 299 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 ++I + LF+ +D EW+ HPLF +FL Q + AAE Q + Sbjct: 300 DQIIERQLFIGALD--QEWWQLHPLFRDFLLQHANLIDPELRNRVLAIAAEWCRDQHYIH 357 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 +A+H+AL A + IL + L L LP + P+L + Q W+ Sbjct: 358 DAMHYALQAQAHQLAAAILTPWVGQFVREAAFYTLRPWLDQLPIHIIWNEPRLCIAQMWI 417 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 + + + L R + + + AE AL A A ++A + A Sbjct: 418 LITLRNGEGIQGYLERISQLVGSNEPNPLAAEALALGALAATMTSKLEQATLWGEQAKRL 477 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 + V T L V H +G+ ++ QQTE + + + + + ++ +L Sbjct: 478 NTSNDPTIQGVMTFCLAVVAHFQGDAQQAEMFYQQTETLGQTINSRFLSTVGAVNRAGLL 537 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 G A + + + P + + A++ +L EA A+ + Sbjct: 538 HDVGQFSRAEQICLSLIEQA-QALPAPRPFMAGMHWMLARIYHQRHQLPEALAAVEQSLN 596 Query: 599 VLSSYQPQQQLQCLAMLIQCSLARG--DLDNARSQLNRLENLL-GNGKYHSDWISNANKV 655 S +Q+ C+A + ++ + D A L +LE G+ I + Sbjct: 597 N-SKIMDNRQMWCVAQAQRVAILQSQNDYPQALHCLQQLEEYAIGHDNAKIRLII--QQT 653 Query: 656 RVIYWQMTGDKAAAANWLRHT-AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 714 R + D A A WL A PE NN Q +A Q L + A +L + Sbjct: 654 RCLLAIEQHDLAQATQWLALINADPEDLNNPINQWLGGLLALRQAAL---DQASSLLNQA 710 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 A + + L L + + G+ A L AL +A I + + Sbjct: 711 LTTAERINFVPLLVSIHATLAMVLARQGQLPKALTELQHALTIAEPELIIQPLLDLQAGL 770 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 L+QL + L H L Sbjct: 771 IPLLQQLPSSPLVLRLLHHNRLETLDLA-------------------------------- 798 Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 +T RE ++L + +G N IA L +A +T+K HI NLY KL V +R A+ A++ Sbjct: 799 -ITPREHEILRYLAAGLGNRAIAEALVIAESTLKRHISNLYLKLDVHNRTAAIVKARE 855 >UniRef50_Q0K482 Transcriptional regulator, LuxR-family n=2 Tax=Ralstonia eutropha H16 RepID=Q0K482_RALEH Length = 1290 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 176/896 (19%), Positives = 338/896 (37%), Gaps = 44/896 (4%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDI 59 +K+ P + RE L+ +L A R +I AG GKT+ + W D+ Sbjct: 393 STKVLPPRGARQLMPREALMGRLLDARRHRCVMIHGQAGSGKTSTLMAWRKAMISLGYDV 452 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHC-AICETMAQKRQYASLTSLFAQLFIELAE 118 W SL DN+ RF YL+A++ +A + +A A + L LA Sbjct: 453 CWLSLAAEDNEPARFLDYLLASIAEADPAAAREASQVVAAGHDEAEIELWAITLVQGLAR 512 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 L L+IDD H +++P I ++++ + + P L + + SR L + LR+++QL E Sbjct: 513 RQRELVLMIDDLHHVSDPAILLALQWLLEYAPPQLHVALASRTALDLSMERLRLQNQLAE 572 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + L F+ +E+ ++ +L I ++++ + + GW LQL A+ R ++ Sbjct: 573 FDMRDLRFSPEESARYLRDQLG-NIPGSDAAALHELTDGWVAGLQLFAIGLRTRQAGSYP 631 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG---- 294 + +A + + EVL + L + AI + L + G+ + Sbjct: 632 VTQV---RDARAFASFFEREVLVRLAPDDLDMLTRVAICQRFCVPLCAEILGQPDAVAGI 688 Query: 295 QMRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWM 352 + R+ + LF+ + D W+ HPL L AE+ +H A + Sbjct: 689 KARVTRMVADHLFITVVGSHDNETWYRIHPLLRETLLGYLAARDEAEIRALHATAWRWFD 748 Query: 353 AQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 A+G EA+ HA++AG+ ++ A +L ELS + L+ LP + + + +L Sbjct: 749 ARGHLDEAVLHAVSAGEPDAAAKLVEGRAQALLVGGELSQVAGLLRMLPQEQVRRSFRLH 808 Query: 413 LLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLA 472 + A+++ + + L + + + + + LRA +A+ + D A L Sbjct: 809 VAHAYMLLYARDFDSLRRSLDEMDAQRASVGTVGCYT-VSLLRAGMALQLDDIDTAAALL 867 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 P ++ + + L +L +GE + ++++ + +R + Sbjct: 868 PEIWNPPPEAGDFTWLARANALSWLLIQRGEHDLARGILEEADLRSR---SPRSRQFGRC 924 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 + L +G ++ A + + + M + A L+ + A Sbjct: 925 VHALSLVREGKIRQACKIVREVLAEAEGYGAGYVAMASMAAGLLADALYELNETEAACQL 984 Query: 593 ARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 I ++ P+ L+ +L G A + L+RLE ++ Sbjct: 985 LEPRIGMVERTSLPEVVLRASLVLSNSHWIAGRRQQALACLDRLEAYAVRYG-LDRLLAE 1043 Query: 652 ANKVRVIYWQMTGDKAAA----------ANWLRHTAKPEFANNHFLQGQWRNIARAQILL 701 A R+ G A A + A + L Sbjct: 1044 ALVQRLRRHLQQGAMERANIVLECVRGLAQRHAASGSDSGPERARALAHAAERAAIDMAL 1103 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 + A LE + + + L G + A++ + A +L + Sbjct: 1104 HTRDFA-GALERIQPLLDATAQGPATASLRMQLAVARQGLGEGAAARQDFVTACRLGHGL 1162 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 G + E M+ LI+ + QR+L + A Sbjct: 1163 GLSRTLLDALEVMSDASDALIREPLPDPVLGFYVQRLLAAHRTAASERGA---------- 1212 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQK 877 P+ + L++RE ++L L+ SN++IA L V+A T+K H++N+Y K Sbjct: 1213 --ADAGPQSGPIALLSEREREILYLLAQAMSNKKIARVLNVSAETVKWHLKNIYAK 1266 >UniRef50_Q13RN6 ATP-dependent transcriptional regulator, MalT related, LuxR family n=3 Tax=Burkholderiales RepID=Q13RN6_BURXL Length = 930 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 186/908 (20%), Positives = 340/908 (37%), Gaps = 44/908 (4%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIG 60 ++L P + RE L+A+L A R +I PAG KT+ + D+ Sbjct: 41 TRLIPPRAARQLIPREALMARLLEARRQRCVVIQGPAGSAKTSTMLALRQAMLTLDFDVA 100 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETM-AQKRQYASLTSLFAQLFIELAEW 119 W SL D+ F L+A++ E + ++ + ++ L + Sbjct: 101 WLSLAPEDDDLTAFFHGLLASLASVDPAIVREAELLVGRESEETAVEHWVITLVRGITRR 160 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L L++DD H + N I +++R+ + + P L +V+ SR + +A LR + E+ Sbjct: 161 KRELVLMLDDVHYLQNARILDALRWLLDYAPPQLHVVLASRRALPVSLARLRSQGLATEL 220 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L F+ +E+++F +L I ++ + + GWA LQL A+ + +A Sbjct: 221 DREDLRFSAEESERFLREQLG-DITKRDAQVVHELTDGWAAGLQLFAIDLKTRKGAAFAP 279 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEE----NGQ 295 A +A + Y EVL + L ++A+ L + + Sbjct: 280 A---TVRDAETFAHYFEREVLVRLAAEDLLLLTRAALCERFCARLCASLMQHASSAGDVA 336 Query: 296 MRLEEIERQGLFLQRMD---DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWM 352 RL +E LF+ + D W+ HPL L++R AAEL E+H AA + Sbjct: 337 ARLSRLEGDNLFITQTGVGQDGETWYRLHPLLREVLQRRVAGLPAAELRELHAAAWQWLS 396 Query: 353 AQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 QG+ EA+HHA+ A +A D++ A L EL L ++ LP + E L Sbjct: 397 VQGYVDEAVHHAVLADNAQAAADLVEGCAHDLLARGELRQLAGLVRRLPPAQIAERFDLR 456 Query: 413 LLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLA 472 ++ A+L + + + + + LR +A+ + D L Sbjct: 457 VITAYLQMYAGETDALMQSIQQIASR-SERPDPRQRYALELLRGGLALQRDDTDSVVALL 515 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + R ++L + +G+ ++ ++++ L Sbjct: 516 PELQRVPADADDFIRAGRGNILSWMFIHRGDYQQARKVLEEGAPHG---GAPRGILLGRC 572 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 A+G + A +Q + + + + L+ +D + Sbjct: 573 MSGMTHAAEGQVLLAERVFCDVLAEAEKQGPAYVGIACMAAALLGEALYELNDVDASLRL 632 Query: 593 ARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 I VL P L+ L +L + G A L RLE+ ++N Sbjct: 633 LAERIGVLERVSIPDTVLRALVVLARAHRFAGRRSEAYDYLERLEDYAKRHGV-DRLLAN 691 Query: 652 ANKVRVIYWQMTGDKAAAANWL--------RHTAKPEFANNHFLQGQWRNIARAQILLGE 703 A +R + G A L R+T R + L + Sbjct: 692 ALCLRSRWLLEEGRLDEAEAALLRCETLAARYTGAVRSTAWEISVCADLARIRMCLHLND 751 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 F+ A L+ L+ + + + L ++ A+ L++AL+L +R G Sbjct: 752 FDGAMSRLKPLSALSEAGGRWCRVIGLRLQMSIAEQGRHNDRAAREHLVEALRLGHRLGL 811 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 + + E Q L L + AQR++ D Sbjct: 812 MRSLLDELGPCRQILDALPLEQDFDPVLAFYAQRLI--------------DAGQASAPAA 857 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 P + L++RE +V+GL+ N++IA ++V+ T+K H++N+Y+KL V+ R Sbjct: 858 PPAAAAHVPIQSLSERENEVMGLLALALPNKKIARVMDVSLDTVKWHLKNIYRKLEVSGR 917 Query: 884 QDAVQHAQ 891 AV + Sbjct: 918 DGAVAKMR 925 >UniRef50_Q3BPP6 Transcriptional regulator, LuxR family n=6 Tax=Xanthomonas RepID=Q3BPP6_XANC5 Length = 923 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 207/918 (22%), Positives = 340/918 (37%), Gaps = 47/918 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-----GK 56 L+ KL + VVR LLA L A L L+ +P G+GKTTL++QW A + Sbjct: 24 LLAGKLEPALPPPGAVVRGALLAALDQAQARPLTLLLAPPGFGKTTLLAQWHAHLSTREQ 83 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + + W SLDE D RF +L A+Q A H + + + L L Sbjct: 84 SAVAWLSLDEEDADAGRFLGHLAYALQNAGADHALCAAVLHNRDHDPRDAAAL--LIRAL 141 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + +++DDY + + + E + I+H L L + +R +P L +A L + QL Sbjct: 142 RAAPRRISVILDDYDRLGSSPVDELVLRLIKHSGGRLHLALATRRVPNLPLARLDLHAQL 201 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 IGS QLA EA+ + A + + GW ALQL L +T Sbjct: 202 SRIGSTQLALDDTEAQALL----GPHVTAPVADELRRYTEGWPVALQLARLWLEGDTQRR 257 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + R +G +A ++ YL ++V++++D TR LL+++ L N AL V ++ Sbjct: 258 QEVTVRFSGRSA-QIAAYLAEQVVNDLDPDTRELLLRTSPLERFNAALADAVRQRQDSGR 316 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L +E L +D EWF YHPLF +FL+Q E ++H+ AA + Sbjct: 317 LLARLEHFHGLLVPLDGEREWFRYHPLFADFLQQLLDREHPGLSVQLHQRAARWFGDHQQ 376 Query: 357 PSEAIHHALAAGDALMLRDILLNHA-WSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 +EA+ HA G + + W L + L+ ++ + P L L Q Sbjct: 377 LAEAVRHAWRGGCGDLAASYIARAGTWQLLLTHGTHEVRALLRHFDHRTIRDTPALNLTQ 436 Query: 416 AWLMQSQHRYGEVNTLLARAE---HEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLA 472 A L + LL R +++ + LR ++ GNP ++A Sbjct: 437 AHLHIKLGEFAHARLLLERFRDFPAALREPLQRDYTVVVALLRDRLDEICGNPHGLTQIA 496 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 A L R + + +G + + ++ A +++ Sbjct: 497 AQA-GALDEDDHLGRGMLLCICATTAIAQGAFAVAERYARNARDTMQRGGSEVGASRAML 555 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 + LF +G L A ++A + + AQL + D+A Sbjct: 556 SLGQSLFYRGRLSDAEACYQQALSWCARTPQPDRVLEAAAQCLLAQLHYERGHHDDAADL 615 Query: 593 ARSGIEVLSSYQP--QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 +E+L + + R + L + +G+ + Sbjct: 616 LHPALELLEQHDGGVDVLAAGYGTALGLERVRDHSGRSALLLLEHIEQIAHGRKLARLSE 675 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFA--------NNHFLQGQWRNIARAQILLG 702 A R++ AA + T H +AR L G Sbjct: 676 LAAAWRLMLLLEHPGNAAIDVLIARTGGESGLAHTLRSPHRWHDRAAMGFALARWHRLAG 735 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 A +L ++ + + + L R + + + Q G A L AL T Sbjct: 736 RSSAALSILGQIEQACLANDNVCHLARARVRIALVLQQRGELVAALPYLYSALDHVALTQ 795 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 V G LR L Q + RA I + LL Sbjct: 796 SWQAIVELGLPAKAMLRSLRQHDPQTVGGTTRALTI--------------------QALL 835 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 + ++RE +VL + GYSN+QIA L ++ T+K H++NLY+KL Sbjct: 836 ERLSGDDDPADDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARS 895 Query: 883 RQDAVQHAQQLLKMMGYG 900 R+ A+ A Q + G G Sbjct: 896 RESALAQALQRGLLRGSG 913 >UniRef50_Q1LKC5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LKC5_RALME Length = 914 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 186/909 (20%), Positives = 365/909 (40%), Gaps = 26/909 (2%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKND 58 I K+ P T +R+RL+ KL A + +L L+T+ AG+GKTTL++QW Sbjct: 7 ILPKIVPPRLGSGTTIRQRLIGKLHAAGDRKLFLLTAGAGFGKTTLMAQWHHHLEQAGAR 66 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 + W +L GD +F + L +A+ +A G M + L A L LA+ Sbjct: 67 VLWVTLAAGDGTLPKFCAVLESALGRA--GVSVAPAKMVTTEDSSDEFDLAAALLDALAQ 124 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 YL+IDD+H + +P ++ L LV+ SR P L + L + ++ Sbjct: 125 APGESYLMIDDFHHVGDPATVGLVQAMADAMLPGLHLVIASRTKPALRLGRLLAMEDVVA 184 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + +L F E + F R + + +I D GW ++L + + + K Sbjct: 185 VDGAELLFNLDETEAFLKARPDVRLGPESAWQIHDITDGWPVGVRLASRAM-CSQFPDGK 243 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 +AR+ ++ +L YL +EV+D + F+L+ ++LR + L VTG + L Sbjct: 244 TARKCV-CDSDNLDAYLSEEVIDELSPELLDFVLQVSVLRCFHADLAASVTGCADAAGYL 302 Query: 299 EEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 EI Q +FL ++ D W+ +HP+F +L +R + + + +H AA ++ +G Sbjct: 303 AEILSQHMFLLPVERRDGQRWYRFHPIFRTYLGKR-RASVGIDARPLHYRAAHWFIQRGR 361 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +EA+ A+ + D ++ ++ + ++L + L+++ + L +P+L+ + Sbjct: 362 FAEAMRSAVLSDDLGLVTQLVDRALPPPHSLAQLGVFSRWLESVGCERLAGHPRLLSMGT 421 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGN-----PDEAERL 471 W R+ L E + LRA +A + + Sbjct: 422 WACALSGRHDLAEQWLRSVEQSGSTGTDAAAARHVLLLRALIATHRDDGAAALTALTALQ 481 Query: 472 AKLALEELPPGWFYSRI--VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 A L+ PG + V ++ L +G+ R+ L + + AL Sbjct: 482 ALQVLQTDEPGSTPDALQDVELALRMRWLSVQGQHLRARDLYHSPAARSTRTGRGELALV 541 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + + + +G A + H ++ + AQ + R+DEA Sbjct: 542 AAATVAGVAMREGDALEAERIGAMVLRRARTIHGDRSLCAVTCTAVMAQAWYELDRVDEA 601 Query: 590 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE---NLLGNGKYHS 646 + L + +L+ + + R +A + R E +G + + Sbjct: 602 REALLHCRTALRAASADLRLRAAQVFGRIMSLRESPQDALAYFTRAEVHFRAIGAHRGVA 661 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIARAQILL--GE 703 ++ ++ + Y ++ + + F + G ++R ++LL G Sbjct: 662 CMLAEQQRIVLSYGDWRHARSMQTALDEIASTHADTDPQFAEVGAVVAMSRTRLLLAMGL 721 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 A I L+ ++ L + L + GR+++A + AL R G Sbjct: 722 AREALIALDAARPFIGAMSNGRLLAVSDFLQTRALEALGRRAEAHACMQSALAACYRLGL 781 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 + EGE + L + +E R + + + + + Sbjct: 782 HRTLIEEGEGLHGILLRAGVGGGAALVEYVRGLMGECPVLESAGVTWPPIPIESNDEGVG 841 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 P+ + + LT+RE +V+ L+ SN++IA L ++ T+K +++N++ KL V R Sbjct: 842 GPK--DDMPVPVLTRRELEVIALLEQSMSNKRIALTLNISVQTVKWNLKNIFVKLQVTSR 899 Query: 884 QDAVQHAQQ 892 +A+ A++ Sbjct: 900 YEAIIVARK 908 >UniRef50_B9K0P0 Two component response regulator n=1 Tax=Agrobacterium vitis S4 RepID=B9K0P0_AGRVS Length = 896 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 196/908 (21%), Positives = 342/908 (37%), Gaps = 64/908 (7%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG- 60 L+ + P + R RL + RLAL+ +PAG GKTTL++QW +D G Sbjct: 30 LLNRRSVPPSASTGLIDRPRLTRLSQLLSKHRLALVHAPAGSGKTTLLAQWHRSLSDAGF 89 Query: 61 ---WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 WYS E D FA L+ A+QQ+ + ++ + LT+L Sbjct: 90 STVWYSASEDDKDPFNFAEGLLQALQQSIADNRDHLPSLDRADALQRLTALLTD-----Q 144 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 PL L IDDYHL E++ + + +LT+V+ SRN P + + R +++ Sbjct: 145 SIRQPLALFIDDYHLAEGGDGGEAINTILASRLPSLTVVLASRNRPAIPVGRYRANGEMI 204 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 +I + L F+ +E + FF + + A ES ++ D GWA L+L AL + T + Sbjct: 205 DIAVEDLHFSEEETEAFFRTASNVALTADESRQMHDHTEGWAVGLRLAALVTGRATGNFV 264 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 +A + +DY ++EV+ + FL K+++L ++N L VTG+ +G Sbjct: 265 AAA---PSGSHRAFADYFLEEVIAGLPAEVCDFLAKTSLLETLNADLCNAVTGQRDGDRM 321 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L +E+ LF+ + T W+ YH LF FL+ R + + +IH AA+ ++ G P Sbjct: 322 LAFLEQSQLFVVELPGTQRWYKYHHLFQEFLQTRLYGDDRPAVEDIHARAAQWFIDNGSP 381 Query: 358 SEAIHHALAAGDALMLRDILLNHAW-SLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +A+ HA A + +++ + +H ++ LP ++ E P L+ L Sbjct: 382 VDAVRHAFLARQSKWAAELIETYCLYDYLSHGRFDTYSRWMQQLPREAREERPLLLFLHV 441 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIRED----------TMHAEFNALRAQVAINDGNP- 465 W + R+ + L E D + + +RA + G+ Sbjct: 442 WRSINMRRFLQAEQTLQTIEAAASDPNSPVSLIAARTGLDISGRLHLMRALIGAYGGDFT 501 Query: 466 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 525 + L++LA +EL + ++ S+ G+L + L + + Sbjct: 502 VGSFHLSQLAGKEL-DRLAFGQVDLDSIHSYFAFNLGKLDLAERLTWRANGVYDDMACHW 560 Query: 526 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 585 + S + A+ Q A +A + + E M + + + Sbjct: 561 GGIHSRCIAAMSYLARALFQEARHVIVEALAIAEQNFGEHSYMVALPSALLGLIAYDDND 620 Query: 586 LDEAEASARSGIEVLSSYQ----PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 641 L++AE R I + ++ L L++ G ++ A + L R Sbjct: 621 LEKAERLWRRAIPAEKATDVSGLCERILIATTGLVRLLDITGRVEEATALLVRASRRAY- 679 Query: 642 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 701 A R+ + A LQ Sbjct: 680 ---------EAEDFRLEFQLGIERADRAFRLNSPAEGRREWERLSLQLPEAR-------- 722 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 +A + + +L AG+ A L A + Sbjct: 723 ----------NRFPSSAWQIWDPFRIVEARILR-----NAGQIDAAAEKLRTLAAGARQE 767 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 G I + EA+A+ + + + R I + A + Sbjct: 768 GRI-LMARQAEALAKVIAPAHEAEETQPADLEDDTMATRRILRDFISPVAASPNPGGGQ- 825 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 + + LTQRE VL L+ G SN +IA L++ T+K+H +N++ KLGV Sbjct: 826 RQEARLSLRGSLTELTQREDDVLQLMRWGLSNSEIATRLDINLNTVKSHAKNIFAKLGVK 885 Query: 882 HRQDAVQH 889 R AV Sbjct: 886 SRTQAVLK 893 >UniRef50_A4A4M2 Transcriptional regulator malT n=1 Tax=Congregibacter litoralis KT71 RepID=A4A4M2_9GAMM Length = 888 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 194/905 (21%), Positives = 363/905 (40%), Gaps = 39/905 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKN 57 +I SKLS P V+R+ +LA+L ++ +PAGYGKT +++ W A + Sbjct: 5 IIDSKLSPPSPNRGHVIRKSVLARLDSCIGGGACVLHAPAGYGKTAVLNDWRSSLTARRI 64 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLDE D F +Y+++A ++A +G ++ + + + + L+ Sbjct: 65 PVLWLSLDEHDRSLNTFLAYVLSAYRKAISGEEPRSPSIFDLSSLSDDEATLS-VLSTLS 123 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQ-LGIANLRVRDQL 176 + H+P +V DD+H + + + +R Q NLTLV +R P LG A+LRV L Sbjct: 124 QLHTPHIIVFDDFHRAASKEVQQLVRRLAHAQIRNLTLVFSTREFPDYLGFADLRVAGDL 183 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEA-AESSRICDDVSGWATALQLIALSARQNTHS 235 LE+ ++L F +E + E + ++ + GW A+ AL R S Sbjct: 184 LELSHRELGFDVEEVIALYSHADDEKNERISWLKQLHERTEGWPVAIG-SALRWRSQGAS 242 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 A +RL+G + S LSDY +++V ++ ++FL+ +AIL +N + + + +G Sbjct: 243 AKDVLKRLSGRD-SELSDYFLEQVFLDLPSDLQNFLMVTAILDRVNGDVSKVLCPKLDGW 301 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 + +ER+G+FL+R D+ G W+ YH L+ FL +R + + +HR AA + G Sbjct: 302 ETIRILERKGVFLERADNEGNWYRYHRLYREFLVERLRRSSSLSSDTLHRMAATWFQENG 361 Query: 356 FPSEAIHHALAAGDALMLRDILLN-HAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 +EA+ H +A D +L + W +++L++ LK L D L + P+L L Sbjct: 362 LLNEAVFHTMAVNDVRKCAQLLESLGGWQYALQGDIALVQAVLKQLSIDDLADYPRLWLA 421 Query: 415 QAW--LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNP---DEAE 469 + + + HR GE + E K ++++ E + V P D + Sbjct: 422 RVYMSVRVGHHRAGEEDLKRFLGFQEQKADTDNSIEPETALIETLVQRYTDRPVTRDGID 481 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 R+ +LA ++LP + V + L + E + S R + + Sbjct: 482 RIERLA-DQLPLDNEVLQAVRANYLCAMYREVSEYSLSDRYAGIALDHYRAIGANYAEAF 540 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 Q Q A ++ + + A+ + + ++ A Sbjct: 541 IYYHQGLTYMRQARFSAARSCYDQGLSIAQRLFGADNDLAAIGRIFLAECYYETSEVEAA 600 Query: 590 EASARSGIEVLSSYQPQQQLQC--LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 647 + ++ L++ + GD R + Sbjct: 601 MELLERSLIHAERADAWLEVYAAGYTTLLRIAYEGGDTSMLERIFARAMETASRRQLPR- 659 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPA 707 A+ V + + + + + + ARA I +E A Sbjct: 660 ---LASLVALQDEDLALRQQTVPQRFLNADPKLEWDQVSQALRVSITARAHIDAQNWESA 716 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 LE+ + A+ + LLL+ W G A + A+ +A Sbjct: 717 RHALEQPRQEAQRTGFFRGYIQLSLLLSATEWNCGNTEHAIEIFESAVSIAILEDARQVL 776 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 E + + L+ ++ ++ + RA + + D +L+ + Sbjct: 777 FEERQLLLPILQYILGPDSSAAMAPARASFL----------RKLRADMQVTAQLIEQEQ- 825 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 L+ RE ++L + G SN +IA ++ T+K H++N++ KLG + R +AV Sbjct: 826 ------CVLSIREIEILRCLMMGESNREIAAGKALSINTVKFHLKNIFSKLGASSRDEAV 879 Query: 888 QHAQQ 892 A + Sbjct: 880 AFAIR 884 >UniRef50_Q1NHC1 Regulatory protein, LuxR n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHC1_9SPHN Length = 893 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 216/918 (23%), Positives = 371/918 (40%), Gaps = 57/918 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKN 57 ++P+ + P + R L+A R+ ++++PAG GKTT + WA A Sbjct: 3 VVPTAILPPRSTHMPIRRAALVALTERVAQSRMTVVSAPAGSGKTTAMLFWADELRAQGR 62 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W + G + F L AA A A+ A + ++L ++ Sbjct: 63 PVLWLAARAGIESKRSFLQALKAAGIAAGMPWDALDSDAADESWLSALATM--------- 113 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 +++DD + P I E + + LT+++ +R L +A +R L+ Sbjct: 114 -GSVKPVIIVDDAQFLAKP-ILEFLAQLSSSARDALTIIIAARGTVGLSLARMRALGFLV 171 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+G L+FT EA + + +P+++ E I D GW + + + R+ + SA Sbjct: 172 EVGVADLSFTLAEATELVTRSIGTPVDSRELQDIVGDTQGWVSGIVIACDLYRRTSDSAA 231 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 K RL G+ ++Y DEVL R FL+ ++IL + + V G+EN + Sbjct: 232 KL--RLTGLRP-EFAEYFHDEVLSLQPDDVRRFLVDTSILDELTPSACAAVIGDENARAM 288 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L+ + R+GLFL +D + YH LF + R +HR A+E + G Sbjct: 289 LDHVFREGLFLNAIDQEHSRYAYHRLFREMVLGRLIDRAPDRAAVMHRRASEYFAEAGQL 348 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 + AI HA +GD L D L A L L ++E LPW L E P L+L AW Sbjct: 349 ALAIEHARLSGDKAFLADQLDRLAEGLTYSGYLYRIDELGAELPWPILAERPNLLLALAW 408 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALR---------AQVAINDGNPDEA 468 Q + + L++ A + RE + +A + Sbjct: 409 RRIRQLAFSSADRLISAARQACEAKREAQSLPAHEIEQLDLLIRHRFVMLAAARDDMVRV 468 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 E ++ L EL Y ++ ++L +++ + EL +++ + +R A Sbjct: 469 EADSEPLLAELADSHAY---LSCTLLAQLMSARRELYHFQDMLKLEAETSRALSRPGSAF 525 Query: 529 WSLIQQSEI---LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 585 S+ ++ + + AQG + A E+AF L E H + A+LL+ Sbjct: 526 ASIALKASVAPTMMAQGKIPLARRFLEEAFALAVEIHGAGSGLAALPALPLAELLYDAGD 585 Query: 586 LDEAEASARSGIEVLSSYQPQQQLQC-LAMLIQCSLARGDLDNARSQLNRLENLL-GNGK 643 L++A A + V+ + Q+ + + ARGDL +A S LN + G Sbjct: 586 LEQAAELADQYLPVVRQWGFSDQMASGYLVSARLRAARGDLPSALSTLNDAHLVAIECGL 645 Query: 644 YHSDWISNANKVRVIYWQMTGDKAAAA-----NWLRHTAKP---EFANNHFLQGQWRNIA 695 A +VR++ D+A L P N + W I Sbjct: 646 DRLRSFIVAEEVRLLIKAGQIDEAEQHFLAGDPQLDGEPIPTLHPTRRNENIAIAWLRIE 705 Query: 696 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 755 + LG E + A ++R LLL ++ G +S+A+R + A+ Sbjct: 706 MQRHRLGRARKVAYRWLEFVKRAGAVRSAVIFE---LLLAEIAVLQGNRSEARRAVRAAV 762 Query: 756 KLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE 815 ++A ++ FV EGE +A + + PELE + +R ++ R Sbjct: 763 EMAEPAAWVRVFVDEGEVIASLIIEAYSQG--PELETPADRFAVRLVSMLRRGP------ 814 Query: 816 NFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLY 875 + + E + T L RE +L ++ G N +I L + T+K +++ +Y Sbjct: 815 ---QIEADEEEEDDFGLTGRLANREVDILTMVSGGLRNREIGDRLGLTEGTVKWYMQQIY 871 Query: 876 QKLGVAHRQDAVQHAQQL 893 KLGV R AV A+QL Sbjct: 872 DKLGVRRRPQAVLRARQL 889 >UniRef50_A5V4S7 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V4S7_SPHWW Length = 878 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 211/907 (23%), Positives = 336/907 (37%), Gaps = 68/907 (7%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND----IG 60 +K + PV T+ R RLLA S + RL L+T+ AG GKTT +SQW A + + Sbjct: 10 TKFTPPVNWGRTMARPRLLAMASAFEDKRLVLVTAAAGSGKTTFMSQWYAALGEQGRLVA 69 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLDE D R S L +++ A + E A ++ Sbjct: 70 WLSLDERDRNPGRLLSLLAESLRLAADEAQLSGERFALNGFELQSDDFIDSFVNAVSLLG 129 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 + +DDY+L P +R +R P NL +V+ SR P LG+A LR + E+ Sbjct: 130 QRTAVFVDDYYLAATPENDLVLREILRLAPPNLLIVLSSRAYPDLGLARLRAYSAMAEVD 189 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 QL F EA F I + C GW LQL +LS + H Sbjct: 190 FDQLRFDGDEATAFMRDVHGIDIGRSGGELFCTRTEGWIAGLQLASLSLKGR--EGHVEL 247 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + ++DYL VLD R FL ++A+L + L VTG + Q +E Sbjct: 248 LENFAGSRREVADYLSSFVLDEQSADVRDFLFRTALLDRFDCDLAGAVTGIADAQGMIEL 307 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +E LF+ +DD W+ YH LF +FLR R E +LP ++ AA G +A Sbjct: 308 VEAANLFIVPLDDQQRWYRYHHLFQDFLRGRAPRE-GIDLPAVYAAAVRHCEECGLGEDA 366 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 + +ALA+ D D++ A +L ++ L L+++ + +P+L ++ W + Sbjct: 367 VAYALASRDEAKAADLIAESAMALIYKGDIPRLASWLESVSESVMQSHPRLPTIRCWALF 426 Query: 421 SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP 480 ++ L D + AE L + + ++ ++ L Sbjct: 427 HAGQWEAGEAALGEIAQRRGDGGD---TAEIELLDVAMRVAADELEDILVRGGELVDRLE 483 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 + + + + Sbjct: 484 DSAPFLAGTLANFV----------------------------------------TMSRIG 503 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI-RAQLLWAWARLDEAEASARSGIEV 599 G +TAW +KA L+ P R RA L A + D A+A ++ Sbjct: 504 IGDYETAWSFCDKAGTLLLR---ADCPYGYIFSRCTRAICLIAEGKADVADAELAKAEQL 560 Query: 600 LSSYQPQQQLQ---CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 + C C+ RGDL AR QL L+ + Sbjct: 561 ANRTAGNISFAAALCRGWRGACAYERGDLLTARQQLEFAVPLIRRCGN-IEIQRRLAVYL 619 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE--FEPAEIVLEEL 714 GD+AAA + L A ++ R ++LLGE +V EL Sbjct: 620 SRTCAALGDRAAAHDVLDELAASRHGDSAGKTRTTVAAERIRLLLGEEDVRQLRLVWAEL 679 Query: 715 N-----ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 + E A RL+ D+ + L + + G + A L L+ + ++ Sbjct: 680 DRFAAREGALPDRLLFDVEISRLRMMIAEGRWGEAAGATPRLAAWLERRQNSARPRAELL 739 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQR---ILREINQHHRHKFAHFDENFVERLLNHPE 826 EA Q RQ N L + +R + RE + + Sbjct: 740 LVEAQIQLGRQDAAANRLARQARVTGERFPMVFREAPDPVQALLNGDWDGEGTGPETSDA 799 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 + L+ RE ++L L+ G+ N+ IA L ++ T+K H+RN+ +KLG +R A Sbjct: 800 LQLAATEHGLSAREGEILSLVIEGHKNKWIARRLGLSEHTVKWHVRNVLEKLGAPNRASA 859 Query: 887 VQHAQQL 893 + L Sbjct: 860 GAMVRHL 866 >UniRef50_B0RP73 HTH-type transcriptional regulator, LuxR family n=4 Tax=Xanthomonas RepID=B0RP73_XANCB Length = 921 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 211/918 (22%), Positives = 349/918 (38%), Gaps = 51/918 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-----AAGK 56 L+ SKL P+ VVR LLA L A L L+ +P G+GK+TL++QW A Sbjct: 24 LLASKLEPPLPRVGAVVRGGLLAVLDQAQARPLTLLLAPPGFGKSTLLTQWHAQLLAREP 83 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W SLDE D + RF +L A+Q A + + L L Sbjct: 84 VAVAWLSLDEEDAEPARFLGHLALALQGAGADPALCAPALHGRDHDP--RDALNALIRAL 141 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + +++DDY I E + I H L L++ +R +P L +A L ++ +L Sbjct: 142 RAAPRRISVILDDYDRPGGSAIDELVLRLIEHAGGRLHLLLSTRRVPGLPLARLELQAKL 201 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 +GS +LA EA+ ++++P E + GW AL L L Sbjct: 202 TRVGSGELALDEDEAQALLGAQVAAP----EVDELRRYTEGWPVALHLARLWLEGGAQRQ 257 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + A R +G NA ++ YL ++V++++D TR LL+++ L +N AL V ++ Sbjct: 258 QEVATRFSGRNA-QIAAYLAEQVVNDLDADTRDLLLRTSPLERVNAALADAVRQRDDSGR 316 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L +E L +D EWF YHPLF +FL+Q E A +IH+ AA + + Sbjct: 317 LLAGLEHFHGLLIPLDGEREWFRYHPLFADFLQQLLDREHPAGALQIHQRAARWFGEHQY 376 Query: 357 PSEAIHHALAAGDALMLRDILLNHA-WSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 S+A+ HA + + W L + L+ ++ + P L L Q Sbjct: 377 LSDAVRHASRGECGDLAASYVARAGTWQLLLTHGTHQVRALLRHFDHRTIRDTPALNLTQ 436 Query: 416 AWLMQSQHRYGEVNTLLARAE---HEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLA 472 A L + LL R +++ + ALR ++ GNP ++A Sbjct: 437 AHLHMKLGEFSHARLLLERFRDFPAALREPLQRDYTVVVAALRERLDEICGNPHGLTQIA 496 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 A L R + + +G + + + +L+ Sbjct: 497 GQA-AALDEDDHLGRGMLLCICAATALAQGGFALAERYAHGGREAMGRGGSELGTGHALL 555 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 + F +G L A + A + + AQL + D+A Sbjct: 556 VLGQSFFYRGRLGDAEACYQHALNGCLRAPQPDRVLQATAHCLLAQLHYERGHHDDAADL 615 Query: 593 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL--LGNGKYHSDWIS 650 +++L + + L R + RS LE++ + +G+ + Sbjct: 616 LHPALDILEQHDGSTDVLAAGYDTALGLERLRDHSGRSAAALLEHVEQIAHGRKLARLSE 675 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR---------NIARAQILL 701 A R++ AA + T E H L+ R +AR L Sbjct: 676 LAAAWRLMVMLEHPGNAAIDVLIARTG-GESGLAHTLRSPHRWRDRAAMGFALARWHRLA 734 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 G A +L ++ + + + L R + + Q G + A L AL T Sbjct: 735 GRSSAALTILGQIEQACLASDNLCHLARTRARIALVLQQRGELAAALPYLYSALDHVALT 794 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 G LR L Q + RA I + L Sbjct: 795 RSWQAIAELGLPAKAMLRSLRQHDPQTVAGTTRALTI--------------------QAL 834 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 L+ + ++RE +VL + GYSN+QIA L ++ T+K H++N+Y+KL Sbjct: 835 LDRLSGDDDPANDLFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDAR 894 Query: 882 HRQDAVQHA--QQLLKMM 897 R+ A+ A + LL+ M Sbjct: 895 SREGALAQALQRGLLREM 912 >UniRef50_A0R0L7 Transcriptional regulator n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R0L7_MYCS2 Length = 759 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 175/651 (26%), Positives = 286/651 (43%), Gaps = 13/651 (1%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG---KN 57 +L+ +KL P V R LL LS + RL L+++P G+GKTTL+SQWA G Sbjct: 18 VLLATKLHIPAIAGQLVHRTALLDALSQSCRSRLILLSAPVGWGKTTLLSQWALGAGKDQ 77 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 GW SLD DN F Y+IAA+Q+ + G + + + L +L Sbjct: 78 RFGWLSLDASDNDPVWFWMYVIAALQKISPGVGTRAVELL-TMGADPIQVVLPTLLNDLD 136 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 P+ L++DDYH++ N IHE + F + P NL +V+ +R+ P L +A LR +L+ Sbjct: 137 AVARPIVLILDDYHMVVNRAIHEQVAFAVGRMPANLHVVLATRSDPLLPLARLRANGELV 196 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+ S L F EA Q + L + + + GWA L L ALS A Sbjct: 197 EMRSDDLRFGVGEAGQLLNDVLGLDLTEEDVRLLHRRTEGWAAGLYLAALSL-AGRAQAA 255 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 R AG N H+ DYL+ EVLD R+FLL+++++R N AL V + Sbjct: 256 AFIRTFAGDN-RHIVDYLMAEVLDRQSPRIRNFLLRTSVMRRFNGALCDAVLQSSDSVSV 314 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 LEE+ER+ LFL +D + W+ YH LFG LR +P +HR AA+ + A+G Sbjct: 315 LEEMERENLFLVPLDMSRHWYRYHHLFGELLRAELHRCEPELVPGLHRRAAKWFEAEGLV 374 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 EA+ H +AAGD D+++ + LS + L LP ++ +P+L ++AW Sbjct: 375 DEALRHLVAAGDIAESADLIVEDWANELAGGGLSTVSGWLDLLPEGTVRGDPRLSAIRAW 434 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHA------EFNALRAQVAINDGNPDEAERL 471 + + + + + ++ + A + ALR A G+ A Sbjct: 435 VALNVGLFDDARIWIEAVAAGLEGVSAAEGSARAGLSEQLVALREVYAFKIGDVTNALDA 494 Query: 472 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 A+ A +R A G L+ G++ + +Q+ ++ + + +++L Sbjct: 495 ARQAATLEVGEAPPARSAAHVTYGAALYFSGDIDEARTELQRAVELTERTGDRRHRVYAL 554 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + I G L A +A + + Q + + + +L+A A Sbjct: 555 GYLALIEAESGQLADAEHLIRRATGVGPDPAGTQNFIDVAVSLAVSVVLYASGEWAAAAD 614 Query: 592 SARSGIEVLSSY-QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 641 +A + + + + L + + GDL+ A + LL Sbjct: 615 AAHLAVGLARKGAGILEVAKALMVRAKILNDFGDLEAAEKSRSEAGALLRR 665 Score = 88.9 bits (219), Expect = 9e-16, Method: Composition-based stats. Identities = 72/425 (16%), Positives = 135/425 (31%), Gaps = 48/425 (11%) Query: 519 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 578 R H ++ L + + + E G + A + E A L++E + + Sbjct: 336 RYHHLFGELLRAELHRCEPELVPGLHRRAAKWFE-AEGLVDEALRHLVAAGDIAESADLI 394 Query: 579 LLWAWARLDEAEASARSG-IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 637 + L S SG +++L + + A+ +L G D+AR + + Sbjct: 395 VEDWANELAGGGLSTVSGWLDLLPEGTVRGDPRLSAIRAWVALNVGLFDDARIWIEAVAA 454 Query: 638 -----LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ-W 691 G + +R +Y GD A + R A E + Sbjct: 455 GLEGVSAAEGSARAGLSEQLVALREVYAFKIGDVTNALDAARQAATLEVGEAPPARSAAH 514 Query: 692 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 751 A G+ + A L+ E L L + ++G+ +DA+ ++ Sbjct: 515 VTYGAALYFSGDIDEARTELQRAVELTERTGDRRHRVYALGYLALIEAESGQLADAEHLI 574 Query: 752 LDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILR----------- 800 A + +F+ ++A + + L Sbjct: 575 RRATGVGPDPAGTQNFIDVAVSLAVSVVLYASGEWAAAADAAHLAVGLARKGAGILEVAK 634 Query: 801 ---------------EINQHHRHKFAHFDENFVERLLNHPEVPELIR------------- 832 E + R + + + HP + + Sbjct: 635 ALMVRAKILNDFGDLEAAEKSRSEAGALLRRCPDNVAVHPMIGSAGQGRRVAVAAYNDEH 694 Query: 833 -TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 LT +E +VL L+ + S I L V+ T+KTH R +Y+KLGV +R AV + Sbjct: 695 IAEDLTSKELEVLRLLATRLSRRDIGQRLYVSLNTVKTHQRAIYRKLGVDNRNSAVARGR 754 Query: 892 QLLKM 896 +L + Sbjct: 755 ELGLL 759 >UniRef50_A5V8I9 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V8I9_SPHWW Length = 899 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 200/910 (21%), Positives = 357/910 (39%), Gaps = 44/910 (4%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLI----SQWAAGK 56 MLI +KL+ P R + RE L+ +++GA RL ++++PAGYGKTTL+ +QW G Sbjct: 14 MLIRTKLAPPNRTIDLLWREALVGRITGAAE-RLTVLSAPAGYGKTTLLSQCHAQWRRGD 72 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + WYS+D+ + ++F +YL+AA+ +A E + + + + + L Sbjct: 73 VAVAWYSVDDSKFESDQFFAYLMAALHRAGLPLPYSQEAIDAGLPGLAAEAAARAIVVAL 132 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 P+ L+IDDYH I +P + + + I P + +++ R +P++ +++LRVR QL Sbjct: 133 EASEEPVRLIIDDYHRIASPATNRFLDYVIERMPNHAAIIMAMRGMPEIALSSLRVRGQL 192 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 L + + F+ EA +F + + + + GW ALQL+ L Sbjct: 193 LLLEQNDIRFSDSEALRFLSDQS----SKVDWGELIERTQGWPAALQLLRLWLAGR---D 245 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 +S L+DYL ++V + + FLL+++I + L ++G ++G Sbjct: 246 QVDTLEHLTRRSSDLADYLAEQVFSGLPADVQKFLLETSIAERICTGLGDAISGRDDGAD 305 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L+++ R+ L + +DD G W+ +HPL FL + A L +H AA + Sbjct: 306 MLDQMRRRNLLVTPLDDDGVWYRFHPLLREFLYDMLARDSQARLDALHLRAAAWLAGENL 365 Query: 357 PSEAIHHALAAGDALMLRDILLNH-AWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 EA+ HA D I+ W + L+LL + + S + P++ L + Sbjct: 366 LPEALGHAARVSDRTAATAIMEAAGGWRMAIRGGLALLRH-VDEIDQVSPADFPRVTLGR 424 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNA------LRAQVAINDGNPDEAE 469 + R E +L R + R + + L A + + P Sbjct: 425 VYFAAQNGRLPEARAMLDRLLAVLPLDRVEATDPGLASEMLCNDLVAHIYEDRAIPAAYG 484 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 R + L R++ + +G+ ++ ++AR H + ++ Sbjct: 485 RFLERQLAH-EGHDPTLRVLLHHLSCLASFDRGDDIWCRVHGEKALKLARSHQLPLLEVY 543 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + G + A ++F+ N E + + A L+ L A Sbjct: 544 AYQYLGLSQIRTGRRREAELYFRRSFEQANRHFGEGSAQVAVAISLLAYTLYLSGDLSSA 603 Query: 590 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR--GDLDNARSQLNRLENLLGNGKYHSD 647 S + V+ + ++ A Q LA G+L A + R + Sbjct: 604 TELLESAVPVIEVSEGWHEVFVAAYATQAWLAARTGNLAAAEQVIQRGRATAER-RGLPR 662 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAKP----EFANNHFLQGQWRNIARAQILLGE 703 + +R W A L +P + + + LG Sbjct: 663 LRYQLDLLRARIWLCLDRAELAGPLLAELGEPSAVFRERDRRLFCDYRVALTACSVQLGR 722 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 + A ++ L + ++ +L AGR+++A + AL+ A G Sbjct: 723 PDEA--LVAALEADVAEAGSVALDIEMAILRAAGAVAAGRRTEAAHAVRQALEAAESEGL 780 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 I G + L + L E Q LR+ R Sbjct: 781 IGIVSQFGALLPPVLAACEESLHLFEPAQRSTVARLRQTTPAARRGGT------------ 828 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 +P +T RE VL + G S++++A L VA +TIKTH N+Y+KL VA R Sbjct: 829 --AIPPAASDIIVTPREIDVLRGLADGLSSKEMARSLGVAESTIKTHRINIYRKLNVATR 886 Query: 884 QDAVQHAQQL 893 A+ A+ L Sbjct: 887 SRAISAARNL 896 >UniRef50_A3I8R1 Probable transcriptional regulator, luxR family protein n=1 Tax=Bacillus sp. B14905 RepID=A3I8R1_9BACI Length = 830 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 183/899 (20%), Positives = 356/899 (39%), Gaps = 89/899 (9%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI-G 60 L+ SK++ P + R +L + +L ++ +PAGYGKT++++ W K + Sbjct: 5 LLSSKITMPHHSPTLIERTQLFDLFDQHIHVKLTILRAPAGYGKTSILTSWLKNKKETTA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGH-CAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLD DN R+ +Y++ A+ +++ I + + A+L L E+ Sbjct: 65 WVSLDAADNDPIRYWTYILHAIARSSKSEIDQILAPLLNSQDPATLEFFIYSLLEEMNAI 124 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 P+ +V+DDYH+I NPVIH+ M F+ + P + + + SR++P L IA RV+ + EI Sbjct: 125 QQPISIVLDDYHVIENPVIHQLMTQFVEYLPSHAHIYMSSRSVPALPIAKWRVKQWIHEI 184 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 S L FT QE K+FF C+ + + I D GW L L + + + + ++ Sbjct: 185 HSGHLRFTLQEVKRFFSCKHLPALNHQQLQAILDKTEGWVAGLLLTSFAHDPDIEALEEA 244 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A+ +S++L E++ N+ T+ FLL++++L+ ++ A+ ++T + N +LE Sbjct: 245 AQPF-------ISEFLWQEIIHNLPSETQQFLLRTSLLQELDPAICDQLTKQTNSLEQLE 297 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELA-AELPEIHRAAAESWMAQGFPS 358 +E +GLF R+ F YH L L + + ++ + ++ QG Sbjct: 298 HLEAKGLFTIRLQSKQPIFRYHHLLAEALHMELTRQFSKQDIRNLVLETSQFIYDQGDYI 357 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 AI AL G + + +H LF + + L L D + +++++ Sbjct: 358 SAIELALKHGQYDLATPWMTDHLVQLFLSGQTATFMRWLHQLRRDQYKVSYEMLVIGFLT 417 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 S ++L+ E LR + A A+ Sbjct: 418 SISTTEVEAASSLMEELE-----------------LRQLTEQWMEQEEHA------AMTY 454 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH----DVWHYALWSLIQQ 534 + IVA G+L +M++ Q+A+ H ++ + Sbjct: 455 IYESAKAFAIVAAG---------GDLQLVEQIMRK--QLAKGHIPSRWDHVPIPYNSFEY 503 Query: 535 SEILFAQGFLQTAWETQEK---AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + + G +T E+ +L E L+ + F + A+ L+ + Sbjct: 504 KLLRTSIGSKGK-LQTMEQGTVISELFRETSLQTANVTAFSYGVAAESLYERNLIPFTHK 562 Query: 592 SARSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 +++ Q + + + + + + +A + L +L + W + Sbjct: 563 EIEMALKLGHQLQDPGLCIPMYLLKAKIYIQQNQISSAVAMLTQLLEDVRE----KHWRT 618 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE-PAEI 709 + ++ + GD A L+ T Q W + +LL E A Sbjct: 619 SIQIMQAYCHIIAGDSHQAELILQSTQS--------KQPFWLLVHARLLLLKEKPNEALT 670 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 L ++ + ++ + +L ++ G + A L +A +LA ++ F+ Sbjct: 671 SLIQIKMKGQQEEQIATIIEATILEAICQYRLGHQELALETLHEAFELAAPFYYVRSFLD 730 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPE 829 E + + +L + ++ + L P Sbjct: 731 EKD----------------------LEPLLEIYFEQLHQRWESIPTVYFSYLKEGTAFPA 768 Query: 830 LIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 S LTQRE + L+ G +N +IA L ++ T++ ++ +Y KLGV R A+ Sbjct: 769 KA-PSMLTQREKDIYDLLVDGITNREIAKRLHLSEGTVRVYLSTIYSKLGVNSRAKAIA 826 >UniRef50_C0GFG5 Transcriptional regulator, LuxR family with TPR repeats n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFG5_9FIRM Length = 534 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 138/515 (26%), Positives = 234/515 (45%), Gaps = 15/515 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLS------GANNFRLALITSPAGYGKTTLISQWAAG 55 ++ K S P + + + R +L L + L L+++PAG+GKTTLI W G Sbjct: 5 ILKIKTSVPPQGANILPRPCILESLDHGLWAAEGFTYPLTLVSAPAGFGKTTLIRSWLTG 64 Query: 56 KND-IGWYSLDEGDNQQERFASYLIAAVQ----QATNGHCAICETMAQKRQYASLTSLFA 110 + D WY+LDE DN+++RF YLI+++Q G + + A + + S Sbjct: 65 REDRAAWYALDEADNKEDRFWLYLISSLQTLKADLGEGPMEMLRSNALSAESEDIESFLV 124 Query: 111 QLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANL 170 L EL P LV+DDYHLI N IH++M FFI + P L L + +R+ P ++ Sbjct: 125 TLLNELFALDKPYILVLDDYHLIENVRIHKNMAFFIENLPPTLHLAITTRSDPPWPLSRW 184 Query: 171 RVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSAR 230 R + ++ E+ QL F +E + + A+ + + + GW LQL A S Sbjct: 185 RAKRKMAELRLDQLRFNEEETGRLLTETKGLALSEAQLNTLHEKTEGWIAGLQLAAYSLT 244 Query: 231 QNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG 290 N ++ + AG N ++ ++L +EV A R FL++++IL L +TG Sbjct: 245 SN-NNKDRFIHEFAG-NQRNVFNFLSEEVFTRQPEAVREFLMQTSILNRFCAPLCDAITG 302 Query: 291 EENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES 350 + L +E LF+ +D+ G W+ YH LF + LR + + E+H A + Sbjct: 303 SNDSAEVLSALEAANLFVIPLDNQGIWYRYHHLFSDLLRHQLSSRQPEMITELHNKAGKW 362 Query: 351 WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ 410 + SEA++H L + + +IL ++ + +L+ L + P + L + P Sbjct: 363 FFEANELSEAVYHFLTVKNLDKVAEILHANSKEIVESEGPNLIVRCLDSFPDEILRKYPL 422 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARAEHEIKD--IREDTMHAEFNALRAQVAINDGNPDEA 468 L + +A + EV LLA AE + + ++A + +A Sbjct: 423 LAVYKALYHLMRKGREEVGALLALAEENADEKLKNHREYSSIVALVKAYHNLFSHKIPQA 482 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGE 503 A+ AL LP ++ RI + G+ G+ Sbjct: 483 LEHAQEALRLLPADNYFLRINIAIISGDTQLFLGD 517 >UniRef50_Q46UJ4 Regulatory protein, LuxR n=2 Tax=Bacteria RepID=Q46UJ4_RALEJ Length = 1336 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 191/942 (20%), Positives = 329/942 (34%), Gaps = 75/942 (7%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDI 59 +KL P + RE L+ +L A R +I AG GKT+ + W D+ Sbjct: 407 SAKLLPPRHARKLLPREGLMNRLLDARRQRCVVIQGQAGAGKTSTLMAWRKALISLGFDV 466 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICE-TMAQKRQYASLTSLFAQLFIELAE 118 W SL DN+ RF L+A++ + + ++ L L Sbjct: 467 SWLSLAAEDNEPTRFFDCLLASLAEIDPAMARDAAMQVGGAEDDDAIEQWVIALVQALGP 526 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 L L+IDD H IT+ I+ +++ + + P +L L SR+ L + LR + L E Sbjct: 527 RERELVLMIDDLHHITDARIYRALQRLLDYAPPHLHLAFSSRSALSLALEALRAQGLLTE 586 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I + L FT +E+ +F + +L I +++ + GW LQL A+ R + + Sbjct: 587 IDMRDLRFTAEESARFLEEQLG-TIAPRDAAALHALTDGWVAGLQLFAVDLRARRSADYP 645 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ--- 295 + + + + EVL + L + + L T + GE Sbjct: 646 LTKV---RDPRTFAAFFEREVLGLLAPDDLELLTRMSTCHRFCADLCTAMPGETETPSRI 702 Query: 296 -MRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWEL---------------- 336 RL +E LF+ ++D D W+ HPL L R + + Sbjct: 703 GDRLARLEADNLFITQVDTHDRDVWYRIHPLLRETLLARLETDKDDAADAVDMSDPDTAE 762 Query: 337 -----------------AAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLN 379 E+H AA + +G +A++HA+ AGDA ++ Sbjct: 763 TPNDMADASRANDEPCAHGTARELHAAAWRWFDRRGHLDDAVYHAVRAGDADAAATMVEG 822 Query: 380 HAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEI 439 +L EL L ++ LP + L L+ L ++L + L R + + Sbjct: 823 CGHALLKRGELPQLLGLVRRLPREQLQNRFGLLALVSFLQLYMRDVDGLGRSLERLDP-L 881 Query: 440 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 499 D LRA A+ +PD + P +VL + Sbjct: 882 CDRSNAVHQYVVCLLRAGHAVQVDDPDTVLGMLPALWAIPPEADDLWWTARRNVLSWLFI 941 Query: 500 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 559 +GE + L TE R+ V +L+ + L +G ++ A + + + Sbjct: 942 LRGEFDEARRLQDDTE---RRSSVPRSSLFGRYITAMSLVMEGEIERAGRSAREVLRESE 998 Query: 560 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-PQQQLQCLAMLIQC 618 Q L + + A +L+ + A I +L P L+ L +L Sbjct: 999 RQGATFLGLTCMAAGLLADILYELNDHEGACQLLEPRIGMLERVSLPDVVLRALTLLSNA 1058 Query: 619 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 678 G A + L+RLE + A +R+ + A R + Sbjct: 1059 HWLAGRRTQASACLDRLEAYAARNN-LDRLQTEALTLRLRRHLQQAETERANTVFRQVQQ 1117 Query: 679 --PEFANNHFLQGQWRNIARAQI-----LLGEFEPAEIVLEELNENARSLRLMSDLNRNL 731 +A + +A A+ L + E + + Sbjct: 1118 LAQRYAGETGTVARHIALAAARAEVEMSLYTQDYATAAARLEALLAREAGAKPLRIAALW 1177 Query: 732 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 791 L L G A+ L AL++ + G I + Q +L + Sbjct: 1178 LQLALARHATGNTRGARPAFLSALRMGHGAGLIRTLLDVTGGAPQVFLELAGEGIDEPVL 1237 Query: 792 QHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGY 851 A+R+ E + L++RE ++LGL+ Sbjct: 1238 AFYARRLQAAAVASGAAI--------------SRPADEAAPIAVLSEREREILGLLAQAM 1283 Query: 852 SNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 SN++IA L V+ T+K H++N+Y KLGV R A + + Sbjct: 1284 SNKKIASVLNVSPETVKWHLKNIYAKLGVNGRGRAAARLRDI 1325 >UniRef50_Q5Z362 Putative serine/threonine protein kinase n=1 Tax=Nocardia farcinica RepID=Q5Z362_NOCFA Length = 1145 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 164/805 (20%), Positives = 314/805 (39%), Gaps = 16/805 (1%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKNDI 59 +K P V R RLL L RLALI +PAG+GK+T+ +QW A + Sbjct: 334 ATKFRPPTPARAPVPRPRLLEVLRAGGRRRLALIHAPAGFGKSTVAAQWRAELTDQGVPV 393 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W LD D+ + F ++L+ A+ + A + ++R ++ + + L E+ Sbjct: 394 AWIGLDHDDDNEVWFLAHLLQAIHRVRPAIGAGLDQALEERPADAVAFVISTLIDEVHAG 453 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 + +VI+D+H IT+P H +M + + +L VV SR+ L + ++RV D+L+EI Sbjct: 454 GETIVVVIEDWHRITDPGAHRAMAALLDNGCHHLRFVVTSRDQSGLPVNSMRVHDELVEI 513 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 GS QL T E Q R + + +I GW A+QL++L+ R N Sbjct: 514 GSAQLRLTRAETGQILVERNGFELTDKQVEQIHRVTDGWPAAVQLVSLALRGNPDPQRLI 573 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 + G + + +YL + VLD ++ FL ++ +N +L ++ + ++ L Sbjct: 574 SALPEGGHG--IREYLAENVLDTLEPRMLDFLTAISVTERVNASLAAALSEDSEAELLLA 631 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + E++ LFL+R++ EW+ PLF LR R + AA+L +HR A+ + F + Sbjct: 632 QAEQRELFLRRIEHDPEWYRMQPLFAEHLRARLERTDAAKLRALHRKASRWYAEHQFLRK 691 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 ++ HALAA D + D++ L + S L+ L ++ LP + +L++ A Sbjct: 692 SVDHALAATDLKLALDLVEGGGMDLIDGSRLATLLGTVSKLPVQQVTSRSKLLMAVARAN 751 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDT----MHAEFNALRAQVAINDGNPDEAERLAKLA 475 + + G + L + + + + E L A A+ D Sbjct: 752 VNLQQSGAARSALGKLTNMLPGGSGEDETNRQRCEAAVLAAADAVTRDQTDGVLDQVADC 811 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 L+ ++ A +V+ V C + + + + + + ++ L Q Sbjct: 812 LDNPDDLPAWTVSTAANVVSYVRLCTFDFDGARQIQEWAQPYHEKSKDPLGTVFGLCAQG 871 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 + Q + A + E+A+++ + + + + +L + L A+ Sbjct: 872 AAAYEQLDIPGANDYFERAWEVAHSRAGPRSHGVRVASAMLGELKYRAGDLATADRLLDE 931 Query: 596 GIEVLSSYQPQQQLQC-LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 ++++ L + RGDL A ++L E + + ++ Sbjct: 932 SHQLVTRVGTVDFLLATFVTGARVKAVRGDLATAAARLEEGERIAREYE-LPRLGAHVRA 990 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL---GEFEPAEIVL 711 R+ + + + + RA + + Sbjct: 991 ERLRLGLPVEPATESGP-GPGLRRATGVAALIAEAEETAAVRAMLAARPSHTDDAPVRRA 1049 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 L LLL + +G +A +L+ A ++ R G+ + G Sbjct: 1050 RALYGRTTEQGRPRAELDTALLLAETLAASGWVGEATAMLVPAAQVCARLGWPRPLLDAG 1109 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQ 796 + LR L L + Sbjct: 1110 PRVVAILRVLRGELHLSPENADETR 1134 >UniRef50_A2SP76 ATP-dependent transcriptional regulator-like protein protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SP76_METPP Length = 901 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 190/892 (21%), Positives = 329/892 (36%), Gaps = 46/892 (5%) Query: 31 NFRLALITSPAGYGKTTLISQWAAG----KNDIGWYSLDEGDNQQERFASYLIAAVQQAT 86 + + +++PAGYGK+TL+S+W + W +D D ++ A L+ A A Sbjct: 28 SRPVFAVSAPAGYGKSTLLSEWREEVIALGYRVVWLLVDGDDQDGDKLAIDLLHAFSPAD 87 Query: 87 NGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFI 146 R ++ L E+A L +DD H +++ +R I Sbjct: 88 TERSQSLVNGVGDRGK---RAVIMALVAEMASRQERTVLFVDDVHWLSDNTAATLLRPLI 144 Query: 147 RHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAA 206 RHQPE + LV+ R + + +L + QLAF + Q + S A Sbjct: 145 RHQPERMALVLSGRANLSSLSSEAALDRRLHVVDHIQLAFNQSDIAQILR-QYSVKPRQA 203 Query: 207 ESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLA 266 I + GW ++LIA++ + S + + L +S+YL + +L + Sbjct: 204 LVQAIYERSEGWPAIVRLIAMTLHSDEESQNNLLQGLLE-RPQAISEYLSEVLLSQLPDR 262 Query: 267 TRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGN 326 LL A+LR N L+ T + + L E++R+ L + R +D + HP+ + Sbjct: 263 AAQLLLCLAMLRRFNGRLVAAATEMSDAEAVLAELQRRALPISRSNDAMLPYALHPIVRD 322 Query: 327 FLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFN 386 FL R + + ++ A G AI +L G+ ++ ++A ++ Sbjct: 323 FLLIRIRRQGINQIGPYVERALAWLTDNGRIDAAIDLSLDVGNVKNAAALIDHYARTMAR 382 Query: 387 -HSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR----------- 434 + LP ++L + P++ + QAW + R E +LA+ Sbjct: 383 YQGRHATFLYWANKLPLEALAQFPEIRVKQAWSLAVLRRAAEAKAVLAKLIIEFAEPTNR 442 Query: 435 ---AEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVAT 491 A H D R + R V +A A+ L P +A Sbjct: 443 PDAASHGFDDQRLSRIRQAVELERCTVPTLCDRAQDAAPYARSWLSRWPDAEPIDLAIAN 502 Query: 492 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 551 V+G + SLA ++ ++ + ++ W + + +L QG + A Sbjct: 503 IVVGCGAMADTDFEVSLAHLRTAQRYVDECKGYYVKAWVDMWLATVLSKQGRYRQALYEC 562 Query: 552 EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQQQLQ 610 ++A + + + L IRA LL+ RL+EA A+ G+ L + Sbjct: 563 DEAVTAVATHLGGETAVEIMLHAIRAPLLYEMNRLEEAGAALEHGLTALIEQTSVDSIIM 622 Query: 611 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK-AAA 669 L + A+G +A L E + G S + R+ + A Sbjct: 623 GHVALARLQNAQGSHLDALETLAEGEVI-GRTHGLSRLVVALAAERIDLLLRHRELGQAQ 681 Query: 670 ANWLRHTAKPEFANNHFLQGQWRNIA-----RAQILLGEFEPAEIVLEELNENARSLRLM 724 A WL E + + A R +L G A + E + A Sbjct: 682 AQWLELQNFSECGPADAFESAMSDKAPRIESRIALLKGNNSVACELTEPALQRAIRTGQK 741 Query: 725 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQL 784 LL+ A L A+++A G++ FV EGE M L I Sbjct: 742 RKQVELLLIRALAAQAGKEHERAGDALQRAIEVAMSEGYVRVFVDEGEQMRLLL---ISA 798 Query: 785 NTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVL 844 L LR+I + + + + LT RE ++L Sbjct: 799 AGLAARASSPTGEYLRQILAAFSVQKSDPKTSAF-----------IAGAESLTGRELKIL 847 Query: 845 GLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 + S SN Q+A L + T+K H++N+Y KL V +R AV ++L + Sbjct: 848 RRLQSDLSNRQLADTLYITEGTLKWHLKNIYGKLNVTNRLTAVTAGRKLGLL 899 >UniRef50_Q46TL6 Regulatory protein, LuxR:Tetratricopeptide TPR_4 n=7 Tax=cellular organisms RepID=Q46TL6_RALEJ Length = 960 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 187/910 (20%), Positives = 344/910 (37%), Gaps = 42/910 (4%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIGWYSLDE 66 V RERLLA+L+ A R +I PAG GK+ + W D+ W +++ Sbjct: 56 RGAARVVARERLLAQLTEARRRRCIVIQGPAGCGKSAALMAWRLELLGLGFDMAWLTVEP 115 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKR-QYASLTSLFAQLFIELAEWHSPLYL 125 DN R+ L+ + + +A + + L +A L L Sbjct: 116 EDNDLARWLDRLLGCLSDVSPAITREAMLLAGRGLDDEGVERTIIALVRGIAACPRELTL 175 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 V+DD H IT + ++M++ + + P NL LV++SR L + LR + LLE+ + L Sbjct: 176 VLDDLHHITELRVRDAMQWLVDYAPPNLHLVLVSRAALPLSLGRLRDQGLLLELDQRDLR 235 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA-----HKSA 240 FT +E++QF +L I ++ + + GW LQL A ++ Sbjct: 236 FTAEESRQFLAAQLG-DIAPRDARMLHELTDGWVAGLQLFATHWKRKRQHDSGISFATDL 294 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM---- 296 R NA + Y EVL + L+++A + +L ++ + Sbjct: 295 VRANVQNAGAFAGYFEREVLSRLAPDEAELLVRAAACERFSASLCAALSEGSQTEAEVLT 354 Query: 297 RLEEIERQGLFLQRMDDTGE--WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 L +E + LF+ ++D+G W+ HPL L +R + + +H AA + + Sbjct: 355 LLARLESENLFIAPVEDSGRETWYRLHPLLRQTLAERFRARSERQQGGVHTAAWQWFRDH 414 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 EA+ HA+ AG+A D + A +L E+ L+ LP + + + +L +L Sbjct: 415 RMLEEAVRHAILAGEAGTAADFVERFATTLMARGEIRKALVLLRLLPAEQIQQRIELRML 474 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + H + R E ++ D + R + + + A+ L Sbjct: 475 TLRMHILMHDADAAAAIADRIEVDLP-ADADKLRYRLALQRLSIMVLRDDTAGAQALLPQ 533 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ-MARQHDVWHYALWSLIQ 533 L+ + ++L + GE + + + M + A SL Sbjct: 534 VLQPPEQLEPFYAGGRNNLLSWLYMHLGEFELARRVQTDAQPLMVEGAPLVGTASGSLNG 593 Query: 534 QSEILFA---QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 + I F+ +G + A + + + F + + L+ L+ A Sbjct: 594 RCMIGFSYALEGKMLQAERVCRDVLREVEHAGSARSEPEYFAAVLLGETLYEQGDLEAAR 653 Query: 591 ASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 ++VL P L+ +L G +A +QL R+E GN + Sbjct: 654 RLLEDRVDVLERVSIPDTVLRVHTVLAAAHWLSGHRLDAFAQLERMEEY-GNQFRLDRLV 712 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI----ARAQILLG--- 702 + + +V+ ++GD A L + H +G I RA IL+ Sbjct: 713 AQSLGYQVLLHVVSGDIDTAEAVLSRLRAVALRHEHAPRGVLDAIHLSAERASILVSLAH 772 Query: 703 -EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 E + A + L + + +L + + G AQ + AL+L ++ Sbjct: 773 NELDDAWRRVMGLLAYCEARGWQRHATQQHILAAVIASRRGDTETAQDHAMIALRLGHKL 832 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 G + + L + +R+ + + A + + Sbjct: 833 GLVRALMDTYPGSLDLLVAAAANEPQDPVLGFYVERL--QAAAQVLPQMASGNTESTDHA 890 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 L E L+ RE V+ L+ N++IA L ++ T+K H+RN+++KL V+ Sbjct: 891 LAGQE--------ELSDREADVVRLLAQALPNKKIARTLGLSPETVKWHLRNIFRKLNVS 942 Query: 882 HRQDAVQHAQ 891 R +AV + Sbjct: 943 SRDEAVARMR 952 >UniRef50_A8VQD6 MMPL domain protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VQD6_9BACI Length = 722 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 162/690 (23%), Positives = 276/690 (40%), Gaps = 16/690 (2%) Query: 2 LIPSKLSRPVRLDHTVVR----ERLLAKLS--GANNFRLALITSPAGYGKTTLISQWA-A 54 ++ +K P D V R +L L A + RL L+ +PAG+GKTT + W Sbjct: 5 ILYTKTVVPPADDAVVERLVRFSDILQDLQRSDAFSRRLTLVQAPAGFGKTTAVRNWITH 64 Query: 55 GKNDIGWYSLDEGDNQQERFASYLIAAV-----QQATNGHCAICETMAQKRQYASLTSLF 109 WY++DE D+ F SY++AA+ + + S TS Sbjct: 65 SGKPAAWYAMDEQDHHPLTFWSYVMAAIGVIQPETVREPQAILMNPETDDPGDDSWTSWM 124 Query: 110 AQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIAN 169 L P +VIDD+H ++P I +M + I H P + +++ +R P I Sbjct: 125 VPFLNALMHAEDPFLIVIDDFHFASSPEITSAMAYLIEHLPSTVHVLITTRERPPWPIVK 184 Query: 170 LRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSA 229 + + L ++G +L F+ EA F+ R + + + + + GW T L+L +S Sbjct: 185 WQAKGWLTDVGKDRLRFSIPEADMLFEKR-GVRVNPSLTEELVNWSEGWITGLELTLVSH 243 Query: 230 RQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT 289 T A + + L+ +L +EVL + F+ SA+L + + V Sbjct: 244 LYGTMQPGHDALGHSDLGVKTLTAFLTEEVLRQLPGHLLDFMETSAVLHKFSPVMCDEVL 303 Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAE 349 + Q + +E + LFL R++D G WF YH + G L R + A + IH+ A++ Sbjct: 304 ERSDSQEVIRFLEEKQLFLVRLNDDGSWFRYHHIMGETLTDRLRQSDPAVIRRIHQRASD 363 Query: 350 SWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 G EAIHHA A D + IL HA SL E E + AL + L P Sbjct: 364 WLSRNGALHEAIHHADKAEDEGRVAQILHYHAESLTYSREPVAFIERINALSHERLRSFP 423 Query: 410 QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE--FNALRAQVAINDGNPDE 467 +L + + + L+ A D R++ + E + L D+ Sbjct: 424 ELFAYSLFYRLLMKGHDGCDALINEARTLSCDNRQNQLVYEGMLDVLSFFYWTGHHAFDK 483 Query: 468 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 527 A A ALE+LP ++ R+ A G++L+ G +L ++ M +H+ ++A Sbjct: 484 ARVYADSALEKLPQENYFWRMSAAVFSGDLLYYAGAPEEALPYFEEAHAMNLKHERHYFA 543 Query: 528 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 + + ++++ F G L A +T QL + F+ + +L L+ Sbjct: 544 ISTELKKAVTFFELGRLSDARKTVASIEQLAEAHGFSGISKMGFVHTLEGELTREQGNLE 603 Query: 588 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 647 EA L + + G + +A +NR+ + Sbjct: 604 EAARLHDKARSRLPDEHGL-LAWHHLFEAKLRYSDGRVTDALQIINRILKPEQVNQIPRY 662 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTA 677 + A+K ++IY A L T Sbjct: 663 MLLQASKRKLIYLMKLNRYDEAYALLDETG 692 >UniRef50_Q5P612 Putative regulatory protein, LuxR n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P612_AZOSE Length = 895 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 185/899 (20%), Positives = 333/899 (37%), Gaps = 34/899 (3%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKNDIGW 61 K P + RLL +L L ++TS AG+GKT+L+ QW A + W Sbjct: 16 KTMPPHSAKQALAPARLLERLRETAEQPLVVVTSLAGFGKTSLLVQWRRELLATGAAVAW 75 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 ++D D F L+A+++ A G Q Q + + +++ +++ E Sbjct: 76 LTVDASD-DSATFIPALVASIRVAV-GLDVPARAFDQLGQSGADLWIASEVLVQIHELAR 133 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P Y++IDD H +++ E + + IR+ P N +V SR P + L + + Sbjct: 134 PTYVLIDDLHQLSDEHAVEFVYYLIRNAPPNFHVVATSRADPPFPVEELNAHGLYTQFVT 193 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 + L + F RL I+ +R+ + GW ALQ++ + + + A A Sbjct: 194 EDLRLRLDDTIGFLRRRLGEDIDIETCARLHERTEGWPMALQIVTAAMARKSDIAGTVAG 253 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 ++ Y VL++++ L++++IL++ + L ++G + L + Sbjct: 254 --LSGATGDIARYFSQFVLESLEPDAVAMLVRASILKTQHPELCAALSGVADSGEILSRL 311 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 E+ + + G+ + HPLF +L A EL +H AAE + A +A Sbjct: 312 EQNTGLVTSVGGDGDNYRMHPLFIEYLHSLLDALPAEELRVLHATAAEWFAAHNMLEQAA 371 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HA AG D + L + + L LP + + + L AW Sbjct: 372 DHAFVAGMRTQAMDWIEKRLRHLGVQGRIVEVLAWLDRLPPEEITRREGIQLTAAWACAL 431 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 +R + L E + + N +R+ VAI+ + A + EL P Sbjct: 432 CYRPQDAERLADVILARPGVTPEIAL--QANIVRSAVAIHCDDYTRARGCIESYDPELGP 489 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 + + L V G R+ Q ++ R ++ A++ + Sbjct: 490 -------LYCNTLSFVAIHTGFPDRARYYQQISDGRGRGVRNFYDAMYGAFAVGLSYLIE 542 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 G A A + + A W DEA A + ++++ Sbjct: 543 GQASEAAGVFRAALERAEASTGWRSLPAAVQAAGLAAACWELGAEDEARALLANRLDLIE 602 Query: 602 SYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA------NK 654 P + L + +G A LN L + +++ + Sbjct: 603 QAALPDAVMLAYLTLARYENQKGREGKAFDALNSLAAIGELRGQPRLVVASLGEQLRQHA 662 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 714 +R A + +P+ L R IA ++ L +F VL Sbjct: 663 IRNRIVSCRMLLGAIDEIVAGADRPDHGLEAEL-RLVREIAATRVALLDFNDEGAVLALE 721 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 + RL ++ + L + A R+ +AL LA + + A Sbjct: 722 RAGGIAARLRRGRDQLTVKLLAACCEGSGDDAAARLFAEALSLAESFRLVRVIADDWPAA 781 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 + L +L + L + R +F E ++ + R + Sbjct: 782 LECLPELDRSG----LAKGAGITPAFVERAAERCRFGWVPEATGQKTAD-----PKNRPA 832 Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 L+ RE ++LG + G SN++IA L+V A TIK H++NL KL A+R+ AV A+ L Sbjct: 833 QLSAREMEILGALSLGRSNKEIAKMLDVGAETIKWHMKNLLAKLNAANRRHAVDRARLL 891 >UniRef50_B9JN67 Transcriptional regulator protein n=2 Tax=Agrobacterium RepID=B9JN67_AGRRK Length = 897 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 192/915 (20%), Positives = 346/915 (37%), Gaps = 48/915 (5%) Query: 1 MLI-PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AG 55 M+I ++ P + V R LLA L + RL I +PAGYGKT+L +QW + Sbjct: 1 MIISQTRFQPPSAGNEHVRRRGLLALLQRSGLRRLTTIVAPAGYGKTSLAAQWYEMFKSQ 60 Query: 56 KNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIE 115 W LD D Q RF L+ ++Q+ E + SL + L Sbjct: 61 GAQAVWIPLDPEDGDQSRFLLALLESLQKLLPD-----ERKGSDANSMPVASLLSALVTR 115 Query: 116 LAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQ-PENLTLVVLSRNLPQLGIANLRVRD 174 L P+ L +DDYH N M + ++ V++SR+ P+ + LR+ Sbjct: 116 LRRIREPIVLFLDDYHFAQNDATESLMAKLLAASDLGHVKFVLISRSPPRFPTSALRLNS 175 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +L +IG L+F+ EA++FF R + + + + S + GWA ALQ++ + N Sbjct: 176 ELKQIGVADLSFSDMEAQEFFGSR-AKKLTSEQISELNQRTEGWAVALQMVRVLVNDNMD 234 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 S+ + + + + YL ++V ++ +HFL +SA L +++ LI V+ ++N Sbjct: 235 SSAILSSF--DGSNAEMGRYLSEQVFSSLPEDIQHFLTESAALPAVSRPLIGAVSAQDNA 292 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 + L + +D G W YHP+F ++L++ + L + +I R AA + + Sbjct: 293 VALFNRLGDHALPIAVLDGQGTWIRYHPVFNSYLKEEAER-LGIDTRQILRKAAHWFESG 351 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHA-WSLFN---HSELSLLEESLKALPWDSLLENPQ 410 G A+ HAL A DA + I+ W +L + + +L + P Sbjct: 352 GDCDAAVRHALLAADATLAAQIIERAGGWRRVYAKTRGGTALFQTLIAKAADINLADFPL 411 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER 470 L + + + N LA AE + + + +R +++ Sbjct: 412 TTLGLSVINAKAGQLDAANHYLALAERAA-ATMGEKLAQDLRVVRVLLSLYTDRWATTAD 470 Query: 471 LAKLALEELPPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 L+ L + R +A ++L + +L R+L Q + + R A+ Sbjct: 471 LSALEADLSQDSGMEPIHRALALNMLSYNFLIRTDLERALHYGQLSIRSFRDAGADFGAM 530 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 + F G TA + + + ++++LL Sbjct: 531 HLYTHIGQAAFFSGDSATAADAYRSLITEAQANIGKGCDLDAISHVLQSELLSMNGDRQA 590 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR--GDLDNARSQLNRLENLLGNGKYHS 646 A A + L + L ++ Q + R G++ A + ++ + Sbjct: 591 AAAVLAWALPHLERHDTWFDLLAAGIMAQQRILRLNGEIMAAHAAIDSA-RSAAKRRGFD 649 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLR----HTAKPEFANNHFLQGQWRN------IAR 696 I + R +GD A + + R R Sbjct: 650 RLIRLIDGERAALLLASGDINEAVRYAEVSGFGAESISSDTANDFAVNLRGNVPALLWTR 709 Query: 697 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 756 + GE A + L + + L +L G ++ A L + + Sbjct: 710 IYLAQGEIARARSTFDRLIKCQSRELHVPRRIELGFLDIRLLLAEGDEATAAARLSEMML 769 Query: 757 LANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDEN 816 + + +IEG ++L QL +P++ R +R+ + Sbjct: 770 SLPVADYRAILLIEGPEFGRRLCQLAASRGVPDVVMQRLERLQDVVAGASAQDSDLLSVP 829 Query: 817 FVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQ 876 T LT RE VL L+ +G SN++I +L+++ T+K H+RN+Y Sbjct: 830 -------------TAATGGLTDRERSVLRLLSAGLSNKEIGRKLDLSNNTVKFHLRNIYA 876 Query: 877 KLGVAHRQDAVQHAQ 891 KL V R AV A+ Sbjct: 877 KLNVTTRTAAVTMAR 891 >UniRef50_B9NI01 ABC transporter family protein (Fragment) n=4 Tax=cellular organisms RepID=B9NI01_POPTR Length = 1760 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 171/896 (19%), Positives = 336/896 (37%), Gaps = 58/896 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKND 58 I K+ P T +R+RL+ KL A + +L L+T+ AG+GKTTL++QW Sbjct: 272 ILPKIVPPRLGSGTTIRQRLIGKLHAAGDRKLFLLTAGAGFGKTTLMAQWHHHLEQAGAR 331 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 + W +L GD +F + L +A+ +A G M + L A L LA+ Sbjct: 332 VLWVTLAAGDGTLPKFCAVLESALGRA--GVSVAPAKMVTTEDSSDEFDLAAALLDALAQ 389 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 YL+IDD+H + +P ++ L LV+ SR P L + L + ++ Sbjct: 390 APGESYLMIDDFHHVGDPATVGLVQAMADAMLPGLHLVIASRTKPALRLGRLLAMEDVVA 449 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + +L F E + F R + + +I D GW ++L + + Sbjct: 450 VDGAELLFNLDETEAFLXARPDVRLGPESAWQIHDITDGWPVGVRLASRAMCSQFPDGQ- 508 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + ++LR + L VTG + L Sbjct: 509 ---------------------------------TRVSVLRCFHADLAASVTGCADAAGYL 535 Query: 299 EEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 EI Q +FL ++ D W+ +HP+F +L +R + + + +H AA ++ +G Sbjct: 536 AEILSQHMFLLPVERRDGQRWYRFHPIFRTYLGKR-RASVGIDARPLHYRAAHWFIQRGR 594 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +EA+ A+ + D ++ ++ + ++L + L+++ + L +P+L+ + Sbjct: 595 FAEAMRSAVLSDDLGLVTQLVDRALPPPHSLAQLGVFSRWLESVGCERLAGHPRLLSMGT 654 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGN-----PDEAERL 471 W R+ L E + LRA +A + + Sbjct: 655 WACALSGRHDLAEQWLRSVEQSGSTGTDAAAARHVLLLRALIATHRDDGAAALTALTALQ 714 Query: 472 AKLALEELPPGWFYSRI--VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 A L+ PG + V ++ L +G+ R+ L + + AL Sbjct: 715 ALQVLQTDEPGSTPDALQDVELALRMRWLSVQGQHLRARDLYHSPAARSTRTGRGELALV 774 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + + + +G A + H ++ + AQ + R+DEA Sbjct: 775 AAATVAGVAMREGDALEAERIGAMVLRRARTIHGDRSLCAVTCTAVMAQAWYELDRVDEA 834 Query: 590 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE---NLLGNGKYHS 646 + L + +L+ + + R +A + R E +G + + Sbjct: 835 REALLHCRTALRAASADLRLRAAQVFGRIMSLRESPQDALAYFTRAEVHFRAIGAHRGVA 894 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIARAQILL--GE 703 ++ ++ + Y ++ + + F + G ++R ++LL G Sbjct: 895 CMLAEQQRIVLSYGDWRHARSMQTALDEIASTHADTDPQFAEVGAVVAMSRTRLLLAMGL 954 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 A I L+ ++ L + L + GR+++A + AL R G Sbjct: 955 AREALIALDAARPFIGAMSNGRLLAVSDFLQTRALEALGRRAEAHACMQSALAACYRLGL 1014 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 + EGE + L + +E R + + + + + Sbjct: 1015 HRTLIEEGEGLHGILLRAGVGGGAALVEYVRGLMGECPVLESAGVTWPPIPIESNDEGVG 1074 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 P+ + + LT+RE +V+ L+ SN++IA L ++ T+K +++N++ KL Sbjct: 1075 GPK--DDMPVPVLTRRELEVIALLEQSMSNKRIALTLNISVQTVKWNLKNIFVKLQ 1128 >UniRef50_A6CQL5 Transcriptional regulator n=1 Tax=Bacillus sp. SG-1 RepID=A6CQL5_9BACI Length = 1099 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 166/842 (19%), Positives = 319/842 (37%), Gaps = 51/842 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 +I S+L P D + R L KL+ + L L+ + AGYGK+T + +A ND Sbjct: 30 VIQSQLMPPPVKDSFMRRASLHKKLASIPKYPLTLLHARAGYGKSTALILFAHDIHNDAC 89 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHC----AICETMAQKRQYASLTSLFAQLFIEL 116 WYS+ D+ F + L+ A++ A + + Q + SL + E+ Sbjct: 90 WYSVSPNDDDIIPFLTKLVHAIKAKIPAFGSPVLAELDMLHQHISDEQMWSLISMFVNEM 149 Query: 117 AEWHSPLYLVIDDYHLITNPVIHE-SMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRD 174 + +++DDYH + ++ E M+ F+ + P NL LV+ SR P G + +L+V+ Sbjct: 150 VGLKDEVVVILDDYHHVQKSMVIEKWMKHFLEYIPSNLHLVISSRTKPSWGILTSLKVKA 209 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +LLEI + L + E + + I + RI GWA A+ ++ + R + Sbjct: 210 ELLEIKQEDLMLSMDEIEHLLEDIYEITITQQDLQRIHQLTEGWAIAVHMLVGNMRNSDM 269 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 R L D+L EVL A + FLLK++IL + + V G + Sbjct: 270 PGGFLDNR--SETLQDLFDFLALEVLSKQPFAIQEFLLKTSILDELASDVCDAVLGTGDA 327 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 Q L+++ RQ +F+Q +D + YH LF FL+ R + + ++R AA+ + + Sbjct: 328 QSVLQKLSRQNVFIQEIDGMK--YRYHALFKEFLQNRLRRTRQEDYINLNRKAAQFFEEE 385 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 A+HH L G+ ++ H L +L L + LK +P + E P L Sbjct: 386 N-IENALHHYLQVGEYSYGARVISLHGRELLQKGKLQTLLDYLKPIPEELKYEFPTLWFY 444 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 Q + + + Y + +A ++ + + + A++ ++ PD+AER+ + Sbjct: 445 QGEISRLRSSYDWAESCYRKAITSGEEAGDHYLVSIALEGIARIYLDTIQPDKAERVLQR 504 Query: 475 --ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 AL E +L E L G+ ++ ++ E + L Sbjct: 505 AIALRENSNESREEMAKLYHLLSENLLNSGQAVKAKKWYERAESLN-------LPLEEGN 557 Query: 533 QQSEILFAQGFLQTAWE-TQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 ++ I G L A + ++ ++ ++ H + + + +E++ Sbjct: 558 LKARIYLRTGRLNKARDLLLKRKNSSMDSSNVHISQSHRETDILLSIIEAFRGNPEESKK 617 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS--DWI 649 A G+++ Q ++ + + +A + R E+ L Y + + + Sbjct: 618 YAEQGLKLGMDIQSP-FVEACGWM--------RMGHAVQLIERYESFLAEKCYKTSLEIM 668 Query: 650 SNANKVR---------VIYWQMTGDKAAAANWLRH--TAKPEFANNHFLQGQWRNIARAQ 698 N + R I G A + + + A Sbjct: 669 DNIDVPRGKAEPYMGLCILLGKQGQYEKAIEAGQKGLYETERVKDVWLSSLIQLCMGIAA 728 Query: 699 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS---DAQRVLLDAL 755 I G++E A VL E+ + + ++ ++ D R L+ L Sbjct: 729 IYCGKYEAAYDVLVEVRNQFEGCGDRYGMMLTSFWKAYIAYETEQEENFCDEMRQFLNEL 788 Query: 756 KLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE 815 ++ + F+ Q + + H + E++ R + Sbjct: 789 QIGE-YHY---FLTRRTTFGPMDIQNFVPLLVKAQKHHIHSSYISELDLATRDNHPGYTL 844 Query: 816 NF 817 Sbjct: 845 KV 846 >UniRef50_B4WXQ1 Transcriptional regulator, LuxR family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXQ1_9GAMM Length = 848 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 175/880 (19%), Positives = 324/880 (36%), Gaps = 58/880 (6%) Query: 33 RLALITSPAGYGKTTLISQWAA--GKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHC 90 L L+ +PAG GK+TL++QW A G+ + L D+ RF + A Sbjct: 2 PLTLLLAPAGAGKSTLLNQWQAQPGERHVVQMGLQRADDDPVRFLRRFAEKTRAAVPAFD 61 Query: 91 AICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQP 150 M +S+ L+ L + PL++V DD+ I + + + P Sbjct: 62 -TSWFMPFDVSELPPSSIADSLYDALQQVALPLFIVFDDFQHIQSEETLSVIATLLADPP 120 Query: 151 ENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSR 210 +N+ L++ SR P ++ LR+ D++LEI + L E + +E Sbjct: 121 DNVHLIIASRTQPLFDVSRLRLDDKVLEISAVDLKVRRSEVSELNQRLGGEALEEQALDH 180 Query: 211 ICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHF 270 + GW +++ L+ ++ + + + DY VL + + R Sbjct: 181 LMAITEGWVAGVKIALLAGIRSGMQTLQDFN----ASQPEIMDYFGHAVLKGLPDSARTL 236 Query: 271 LLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQ 330 ++SA+L ++N L + ++E+ + LFL + + YH L +FL+ Sbjct: 237 FMQSALLDTVNAELGDEILQTRQSARLIDELTSRELFLVPVPGKPASYRYHALLRDFLQA 296 Query: 331 RCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSEL 390 R + E+ + IHR A ++ G +A+ HA GDA + + L Sbjct: 297 RLKIEMPDCIVPIHRRATRYFIKTGNFEQAVWHAWRTGDAALFGNCLEKSFEFWLQEGYS 356 Query: 391 SLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE 450 S + E + L +++L +L + R+ L + + +E H Sbjct: 357 SHILEWAETLDDETILGRLELAAPLISTLTLSRRFFRARYYLDALKEQDFSGKEARYHHS 416 Query: 451 --FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 508 + L + + + D E A L+L G R + +++ G L +L Sbjct: 417 QTVDFLELHLQLFQHDTDFMEG-ANLSLLMESSGHRDIRAFSLAMVAYYHLQHGRLESAL 475 Query: 509 ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 568 A Q + + A ++ + + G + A + F P Sbjct: 476 AFSSQARDVLLRLGQRFTAGYAGLITALANQQLGHIGEAVAFIVENFN----NTRRDCPT 531 Query: 569 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM-LIQCSLARGDLDN 627 +L+ RL+EA+ + ++SS + + + + L + +G + Sbjct: 532 WSLWATGMVVVLYDQNRLEEAQQVCEDLLPMVSSASATEVISTVYLTLSRLQHLQGKQKS 591 Query: 628 ARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG---------DKAAAANWLRHTAK 678 A L +L +L G Y ++S A +TG D+ A W+ + Sbjct: 592 AERMLEKLLGILQLGNYE-RFVSMAVLEMTRQALLTGNWQRLDVVVDRFELAAWVEENLE 650 Query: 679 PEFANNHFLQGQWRNIARAQILLGEFE--PAEIVLEELNENARSLRLMSDLNRNLLLLNQ 736 E A+ + + R +A L+ AE +L L + + + R ++ Sbjct: 651 GE-ASMYSQSWERRGLAAVYWLMAHGRNAEAETLLRRLLAVVKGAGIKT---RASIIEAN 706 Query: 737 LYWQAGRKSDAQRVLLDALKLANRTGFI---SHFVIEGEAMAQQLRQLIQLNTLPELEQH 793 L + + A L R G + E +A + +L L Sbjct: 707 LLVLTSKAATATEQSRKVDALITRYGLLNINRSVFDEAPGLAGLMNRLWSAGQL------ 760 Query: 794 RAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSP---LTQREWQVLGLIYSG 850 F + N + + P LT +E ++ L+ SG Sbjct: 761 ---------------LLPDFYTGLFPAVFNATPASDPLEVDPDSVLTPKENEIFELLQSG 805 Query: 851 YSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 SN QI+ V+ TT K H++N+Y KLGV++R +AV A Sbjct: 806 MSNAQISECTGVSVTTTKWHLKNIYSKLGVSNRTEAVLRA 845 >UniRef50_C1B9T9 Putative LuxR family transcriptional regulator n=1 Tax=Rhodococcus opacus B4 RepID=C1B9T9_RHOOB Length = 897 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 200/904 (22%), Positives = 337/904 (37%), Gaps = 63/904 (6%) Query: 9 RPVRLDHTVVRERLLAKLSGA-----NNFRLALITSPAGYGKTTLISQWA------AGKN 57 P + TV R RL L+ A + + +AL+ +PAG GKT L + WA A Sbjct: 33 PPGAVGRTVTRTRLHTLLTEALTSEDHPYPVALVCAPAGSGKTQLAADWARDVLAGADAP 92 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 I W +++E N ++ A+ +A N R A L A+L +L Sbjct: 93 TIAWITIEERHNDLGVIHRAILRALNEAGNPRLRELC----DRLDADSPDLGARLSAQLN 148 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 E ++LVIDD HL+ + I + F+R QP L ++ R P L + LR+ +L Sbjct: 149 ELGENIWLVIDDAHLLRDTDILNDLESFMRWQPPMLRTIICGRFEPPLALQRLRLDGKLF 208 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + ++ LAFT EA ++ + + D GWA ++L +S +T + Sbjct: 209 TVTARDLAFTADEAAAMLTEH-GVRLDPGDLDALMDRTEGWAAGIRLAGMSLEGHTDPSR 267 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 A ++DYL++EVL R FLL++++ S +TG + + Sbjct: 268 LIAEF--SGTRRAVADYLIEEVLAGQTDEMREFLLRTSVPESFTTEFAEVLTGCTDAHDK 325 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 ++ +E + R+D++ + YHPL ++LR E+ + AA G Sbjct: 326 VDWLEHHNFLISRIDESPTHYRYHPLLRSYLRAEISRIGHVEVEHLELTAAHWHAEFGDS 385 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 A+ HA+ +GD ++ +L + SL L+ L P + E+P L++A Sbjct: 386 LVALEHAVNSGDHDVIVALLSQSSLSLIVGGHGEALDRLLTRAPRTA-QEHPSARLIRAA 444 Query: 418 LMQSQHRYGEVNTLLA-----RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLA 472 + + L +A I +LR Q AI G+ A Sbjct: 445 AALAAGNLPVARSTLDILDRTKAGTVIGGTDSRRHLLLRESLRVQTAIQTGDIGAALTRL 504 Query: 473 KLALEELPPGWFYSRIVATSVL--GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 + P S + A +L G L G S ++ + AR D ++ Sbjct: 505 RSV---GPESTGESDLDAFVLLQEGRALLFLGRSEESEHVLGEALAHARLADASLTVMYC 561 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 L + + ++G + A ++ + EQ P + +L+ +W R + Sbjct: 562 LGTLAALAMSRGEVVRAAAFVSESLMIGAEQSATSDPTFHLV-----RLVDSWCRYIRLD 616 Query: 591 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY--HSDW 648 A S I S+ + A + LD + + + + L + Sbjct: 617 EDAAS-IAAESADVLHRVNAETAAFADGAAVLFGLDGSDRRHSAVTTLHTHSPVSSTMPV 675 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 V + Q A W A A + + A Sbjct: 676 PPGIRAVLLPAIQYAYLTAGEVGWAHELAADAKTLLGPTGDTAVLDAIVHLHAHRLDQAR 735 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 L+ + E A ++L L+ + S A L +AL+LA + F Sbjct: 736 KTLQPVLEGALVCAAGTNLIAAWLVDTAIALARKHDSRAHSALTEALRLAEPDSLLRPFH 795 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 G + L + + E F E L Sbjct: 796 DCGPQVRDLLVRSTGRFGVL--------------------------EPFAETLRASFPRS 829 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 E + LT RE ++L + S + EQIA +L V+ T+KTH+R +Y+KLGV R+DA+ Sbjct: 830 ESAASDMLTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYRKLGVTSRRDAIA 889 Query: 889 HAQQ 892 AQ Sbjct: 890 AAQH 893 >UniRef50_Q0S8R3 Transcriptional regulator n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0S8R3_RHOSR Length = 881 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 187/907 (20%), Positives = 326/907 (35%), Gaps = 57/907 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKL-----SGANNFRLALITSPAGYGKTTLISQW----- 52 + +++ TV R RL L A+ +AL+ +PAG GKT + W Sbjct: 11 LSTRI-PTSAGGRTVTRTRLHTMLTEALTDDAHPCPVALVCAPAGSGKTRAVGDWVRELL 69 Query: 53 -AAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQ 111 A I W +++E N + ++ ++ N L AQ Sbjct: 70 AAGDAPTIAWLTIEERHNDLDVVHRAILRSLTDTGNARVQKACAGLDSEAP----DLGAQ 125 Query: 112 LFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR 171 L L E +++VIDD HL+ + + + F+R QP L +V++ R P L + LR Sbjct: 126 LSAALHELGENIWMVIDDAHLLRDTDVLTDLESFVRWQPPMLRMVIIGRFEPPLALQRLR 185 Query: 172 VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ 231 + +L + ++ LAFT EA + + A + + D GWA ++L +S Sbjct: 186 LDGKLFTLTAKNLAFTSDEAAEML-DEHDVVLSADDLDALMDRTEGWAAGIRLAGMSLEG 244 Query: 232 NTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE 291 + + A + ++DYL++EVL R FLL++++ S L ++TG Sbjct: 245 HPDPSRLIAEFTG--DRRAVADYLIEEVLAGQTDEMREFLLRTSVPVSFTVELAEKLTGC 302 Query: 292 ENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW 351 + ++ +E + R+ D+ + YHPL ++LR E+ + AA Sbjct: 303 TDAHGNIDWLEHHNFLISRITDSPTHYRYHPLLRSYLRAEISRIGHVEVEHLELTAAHWH 362 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 G A+ HA+ +GD + +L + +L ++ L P S ++P Sbjct: 363 DEFGDALLALEHAVNSGDHDEIVALLARTSLALIVGGHGEAVDRLLTRAPRSS-QDHPSA 421 Query: 412 VLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE------FNALRAQVAINDGNP 465 L++A + + L + + D +LR Q AI G Sbjct: 422 RLIRAAAALASGNIPVATSTLELLDRRRSGLLVDGAAESRVHLLLRESLRVQTAIGTGGI 481 Query: 466 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 525 + A + G G L G S ++ ++ AR DV Sbjct: 482 ETALNRLRNV-GVGSSGDPDLDAFVLLQEGRALLFLGRNDESEVVLGKSLAHARLGDVPL 540 Query: 526 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 585 ++ L + ++G + A ++A + P + I + + Sbjct: 541 GVMYCLGTLGGVAMSRGDVVRASALADEALAIGRTHSATSDPTFQLAKLIDSWCRYIRMD 600 Query: 586 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 645 D A +A S + ++ + A + N S + L Sbjct: 601 PDAARLAAESAEAL---HRAHTETAGFADGAATLFGLDETGNRHSSVTTLHAESPVSSSL 657 Query: 646 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 705 V + Q A W A A A + L + Sbjct: 658 P-VPPGIRAVLLPAIQYAYLFAGETGWAHELASETHALLGPTGDTAVVEAIVHLHLHRLD 716 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A L+ + + ++L L+ + S A L +AL+LA + Sbjct: 717 LARKTLQPVLDGELECAAGTNLIAAWLVDASIALARKHDSRAHSALTEALRLAEPQSALR 776 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 F G + + L + + E F ERL Sbjct: 777 PFHDCGPQIRELLVRSTGRFGVL--------------------------EPFAERLRASF 810 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 E + LT RE ++L + S + EQIA +L V+ T+KTH+R +Y+KLGV R+D Sbjct: 811 PRSESAASDMLTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYRKLGVTSRRD 870 Query: 886 AVQHAQQ 892 A+ AQ Sbjct: 871 AIAAAQH 877 >UniRef50_P95078 Probable serine/threonine-protein kinase pknK n=18 Tax=Corynebacterineae RepID=PKNK_MYCTU Length = 1110 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 168/784 (21%), Positives = 300/784 (38%), Gaps = 20/784 (2%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDI 59 +K V V R RL L RL LI +P+G+GK+TL +QW + Sbjct: 333 ATKYRPSVPTGSLVTRSRLTDILRAGGRRRLILIHAPSGFGKSTLAAQWREELSRDGAAV 392 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W ++D DN + F S+L+ ++++ + ++ + + L E+ E Sbjct: 393 AWLTIDNDDNNEVWFLSHLLESIRRVRPTLAESLGHVLEEHGDDAGRYVLTSLIDEIHEN 452 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 + +VIDD+H +++ ++ F + + +L L+V S + L + LR+ D+L EI Sbjct: 453 DDRIAVVIDDWHRVSDSRTQAALGFLLDNGCHHLQLIVTSWSRAGLPVGRLRIGDELAEI 512 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 S L F EA + + A+ + GWA AL+ +A + + A + Sbjct: 513 DSAALRFDTDEAAALLNDAGGLRLPRADVQALTTSTDGWAAALR-LAALSLRGGGDATQL 571 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 R L+G + + ++L + VLD ++ R FLL +++ L + + G NG+ LE Sbjct: 572 LRGLSGAS-DVIHEFLSENVLDTLEPELREFLLVASVTERTCGGLASALAGITNGRAMLE 630 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 E E +GLFLQR +D WF +H +F +FL +R + + + E+HR A+ + G+ E Sbjct: 631 EAEHRGLFLQRTEDDPNWFRFHQMFADFLHRRLERGGSHRVAELHRRASAWFAENGYLHE 690 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ HALAAGD D++ +L S+++ L ++ LP ++ +L L AW Sbjct: 691 AVDHALAAGDPARAVDLVEQDETNLPEQSKMTTLLAIVQKLPTSMVVSRARLQLAIAWAN 750 Query: 420 QSQHRYGEVNTLLARAE-----HEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 R L R E E+ + + + AE + LRA + + + L Sbjct: 751 ILLQRPAPATGALNRFETALGRAELPEATQADLRAEADVLRAVAEVFADRVERVDDLLAE 810 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 A+ A + C+ E L+ +++ + Sbjct: 811 AMSRPDTLPPRVPGTAGNTAALAAICRFEFAEVYPLLDWAAPYQEMMG-PFGTVYAQCLR 869 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 + + A + AF+ + + A+LL+ L A Sbjct: 870 GMAARNRLDIVAALQNFRTAFE-VGTAVGAHSHAARLAGSLLAELLYETGDLAGAGRLMD 928 Query: 595 SGIEVLSSYQPQQQLQC-LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 + S L + + A+GD + A +L+ + N Sbjct: 929 ESYLLGSEGGAVDYLAARYVIGARVKAAQGDHEGAADRLST-GGDTAVQLGLPRLAARIN 987 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL----LGEFEPAEI 709 R+ AA + L P + + + ++L + + A Sbjct: 988 NERIRLGIALPAAVAA-DLLAPRTIPRDNGIATMTAELDEDSAVRLLSAGDSADRDQACQ 1046 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 L R + +L + GR+SDA+ L G V Sbjct: 1047 RAGALAAAIDGTRRPLAALQAQILHIETLAATGRESDARNELAPVATKCAELGLSRLLVD 1106 Query: 770 EGEA 773 G A Sbjct: 1107 AGLA 1110 >UniRef50_C9ZHK9 Putative transcriptional regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZHK9_STRSW Length = 913 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 194/916 (21%), Positives = 334/916 (36%), Gaps = 68/916 (7%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK-NDIGW 61 + ++ + P R + R RL+ +L A L ++ AG GKT L++ WAA + + W Sbjct: 44 LRTRFAVPARPGTFLRRARLVDRLDRALTTPLTVVNGAAGAGKTLLVADWAARQEPPVAW 103 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 + + GD F +Y++ ++ A G E + +L +L EL Sbjct: 104 LTTEAGDQGPGMFWAYVLQTLRSA--GVPLSPEIGCPADAGRADRTLLTRLAAELGARER 161 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P+ LV+D++ + +P I + + F + H + LV+++R P L + R L EI + Sbjct: 162 PVILVLDEFDRVADPEIADQLEFVLHHAAGGVRLVLVTRTEPLLPLHRHRTAGDLTEIRN 221 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 +LAFT +EA + + + + GWA L+L AL+AR+N R Sbjct: 222 AELAFTPEEASVLLGLH-GLRLPVPVAEALVERTRGWAAGLRLCALAARENPDPEMYLKR 280 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 + + ++D+L+ EVL+ T+ LL+ ++L + L +T + L E+ Sbjct: 281 F--EVERTAVADFLLAEVLERQPPETQDLLLRVSVLERIRPELADALTERGDAAGILAEL 338 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 R F++ D W+ HPLFG LR + L P +HR AA+ G EA+ Sbjct: 339 HRGNAFVE--DLGHTWYRLHPLFGEILRAHLRMRLPGLEPVLHRRAADWLRRSGLLDEAL 396 Query: 362 HHALAAGDALM-LRDILLNHAWSLFNHS-ELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 H AAGD ++ + A L + + +P L++A Sbjct: 397 GHGAAAGDWDFTAGALVDDLALGQLFTGLRSDDLTALFSRMGPE--ARSPAAHLVRAARE 454 Query: 420 QSQHRYGEVNTLLARAEHEIKDIRED--------TMHAEFNALRAQVAINDGNPDE---- 467 S+ + L AE ++ + + L A A G+P Sbjct: 455 LSRCELDRGLSHLRHAERDLAEDEDRAEDEPGPAAARLSCLLLEALAARLTGSPGRAELV 514 Query: 468 ---AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 524 AERL + L + + LG G + A + + + Sbjct: 515 AGTAERLREQVPAHLLDAHPELTALLLTHLGSTRLWAGRFEEARAALSLVTEGSGDASTA 574 Query: 525 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 584 L + I + G+ A A L L Q + A + Sbjct: 575 LAREDCLGLLALIDYLNGWPGRAERRANAALTLSERYSLPQPSAFGIAHLVLAAVAVDRD 634 Query: 585 RLDEAEASA-RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN---RLENLLG 640 L A A + P + + LARGD A + + Sbjct: 635 ELRLARAHLDAVADDRSPLRDPVTEAGRAIATGRLLLARGDTRGALAATEPAVTADVASP 694 Query: 641 NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 700 + H+ +++A + ++AAA +P A ARA++ Sbjct: 695 WARGHTALVASA----AHLARGRPEEAAALLHDVPGHQPVCAVGE---------ARARLA 741 Query: 701 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 760 G A VL+ + R+ + R LL+ + G + +R++ AL A R Sbjct: 742 AGTPRAALDVLDAVPAETRTG--PAVTVRALLVRAEAAHAVGDTAAVRRLVAQALHEARR 799 Query: 761 TGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVER 820 F G + L + Sbjct: 800 ERLRRPFAEAGGWLRPVL----------------------DTAPLRGLAAGWLTPGPAPH 837 Query: 821 LLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 L+ RE VL + S E+IA +L V+ T+KTH++++++KL V Sbjct: 838 TGTPGPEDRPPVVEDLSGRERDVLRGLDRMMSTEEIAADLCVSVNTVKTHLKSVFRKLAV 897 Query: 881 AHRQDAVQHAQQLLKM 896 R DAV+ A++L + Sbjct: 898 NRRNDAVRRARELHLL 913 >UniRef50_C3JMT5 Putative transcriptional regulator n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JMT5_RHOER Length = 876 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 167/905 (18%), Positives = 307/905 (33%), Gaps = 53/905 (5%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGA------NNFRLALITSPAGYGKTTLISQWAAG- 55 + + P + V R RL KL+ + + L+++PAG GKT L++ WA Sbjct: 6 LNGRFHPPTAVKGLVARPRLHHKLTASTATKGSGPGPVGLLSAPAGAGKTLLLADWAREY 65 Query: 56 -----KNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFA 110 + W +L E DN L A+ + + Q + Sbjct: 66 SRASPDVALAWLTLAERDNNVSILCESLAEAIATSVDAAGQRLP--VQTGSRPPVEQWLT 123 Query: 111 QLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANL 170 L L++DD H + +P+ + + P NL+++V +R P L L Sbjct: 124 HFAETLETHERRTTLILDDVHTLHDPMSIGLLDRILTQTPGNLSIIVAARYEPPLTWHRL 183 Query: 171 RVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSAR 230 + +L S LAF E F + E + + + GW ++L A Sbjct: 184 ALDGRLTRFASTDLAFDRSEITAIFGE-YDITLRDDELAIVENFTKGWGAVVRLTAAFLA 242 Query: 231 QNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG 290 + ++D+LVDEVL ++ F+L+++++ S + L +T Sbjct: 243 GRSDIGDALDEFT--HTPRPIADFLVDEVLTSLPEHVTSFMLRTSVVDSFSAQLAETLT- 299 Query: 291 EENGQMRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAA 348 + N + ++ + + + R D D WF YHPL LR + E +H AA Sbjct: 300 DSNARSEIDSLIQFNFPVTRTDSADHTTWFSYHPLLREHLRAEFRRVDHVERNRVHLRAA 359 Query: 349 ESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLEN 408 + + F EA+ ++ GD + L L + L+++ + E+ Sbjct: 360 SWFESNHFELEALELEVSIGDPHRILAFLERCGLGLVLDGHCGDVVRVLESV-STQVSES 418 Query: 409 PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA 468 P L+ A T L E I ED + + + V N A Sbjct: 419 PITRLVLAAAALHSGDVTSATTCLDLLEATHPPIAEDPLFLAMSLEISCVTATSDNEPLA 478 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 RL + A L + E R+ Q + + L Sbjct: 479 ARLERR----QKSTHSDIEAYAHMELATAHLLRREFDRATVEYTQAVALGTIRGRARFVL 534 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 SL + G + A E + +E + A + A + Sbjct: 535 KSLTGLGYVASLSGDIGAMRAHSVYALDYAVEHRITTTAEYELSASVAAFATYLCASSEL 594 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 G + + LD + + + ++ + Sbjct: 595 PYRIPTIGNYRSTDILGASA-PVFGWHSVVTFGLHSLDGSTDRRSTAADVRDAMLSAIEL 653 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 + A + + + A + F + ++AR + + AE Sbjct: 654 RTFAFATLALLPPVVHACLSVGEVEWAARLVRDAADQFGETSEIHLARGAVAFSSNKFAE 713 Query: 709 IVLEELNE-NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 ++E + + L++ L ++ G + + R L AL+ A + F Sbjct: 714 ALVEVSEALGSSEIPLLAHHVYAWTLEAGIHAATGHERKSFRSLHKALRAAEAGSLLRPF 773 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 + G ++ + E F E++ + Sbjct: 774 LDYGASLRPVFDEFSGHFGD--------------------------QEAFAEQVRSRIRP 807 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 EL+ LT E+ VL + SG + E IA L ++ TIKTH+R +Y+KL V++R+DA+ Sbjct: 808 QELVSAPILTPGEYTVLRELASGDTTESIADTLFLSVNTIKTHLRGIYRKLEVSNRRDAL 867 Query: 888 QHAQQ 892 + A++ Sbjct: 868 KAARR 872 >UniRef50_Q0BFD2 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=48 Tax=Burkholderiales RepID=Q0BFD2_BURCM Length = 955 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 186/910 (20%), Positives = 321/910 (35%), Gaps = 47/910 (5%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIGW 61 K + P + R RL + + L+ +PAGYGKT+L++QW + W Sbjct: 76 KTTAPRVPAQLLARARLSLAAPAFDARPVMLVQAPAGYGKTSLLAQWRRESLALGRAVVW 135 Query: 62 YSLDEGDNQQERFASYLIAAVQQ--ATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 S DE D+ R L+ AV+ A G + A + E+A+ Sbjct: 136 LSADERDDAP-RLLQGLVQAVRTGCARPGFGRLIAGGAARALEG-----LTAWLAEVAQL 189 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L++DD + + +++ + + + P+NL ++V R +L Q Sbjct: 190 SIDALLIVDDAERLPAAGL-DALTYVLHNAPQNLRVIVAGRRGLDRAAGDLLAGGQCTLA 248 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 G + L FT E R + ++A +R+ + V GW LQL + ++ Sbjct: 249 GPEWLRFTLDETIALVGARFAQRVDADACARLFERVDGWPLGLQLAMAAMARSADPRQAV 308 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A ++ + D LV+ +L N+ FL +++I ++ +L + + RL Sbjct: 309 DALAARMDGTR--DRLVELLLANLSADDTAFLTRTSIADRLHPSLCAALLDDAEAPDRLA 366 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + R DD+ +W HPL + LR R AAE +H AA A G E Sbjct: 367 RLARDTPLFIASDDS-DWCRLHPLVRDTLRDRLAAGPAAERSVLHGRAAAWLDAHGMTEE 425 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A HA AAG + ++ + + L LP L + P L + AW + Sbjct: 426 AARHAYAAGQVETAYALAQRCLEDAIKQGRINDVLDWLALLPDAELDKRPTLRIAVAWAL 485 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL 479 R+ E +A M E + + A D L + + Sbjct: 486 ALGERHVEAQRQIAGI--LADAATPAAMRYECALILSAAAYYADEIDRFVELFEPWADFT 543 Query: 480 PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 539 PP + + + L GE ++ Q + + A W + Sbjct: 544 PPAATWLAQMHANRLSARAIIVGEPAQARRYQQAAPRGGTAAGFGYVARWGELITGLSYL 603 Query: 540 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 599 +G ++ A + A + P+ L + A + + R+D+A A + ++V Sbjct: 604 CEGQIRLADDALSPALARAEADLGRRHPLTCMLAAMCAAIAYEADRVDQAAALLANRLDV 663 Query: 600 LSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 658 L P L + +L RG A L L+ L G + + +V Sbjct: 664 LEHAGTPDTVLLGYRTSARIALLRGVEHRAIDLLEALDAL-GVARRLPRLSVASLAEQVR 722 Query: 659 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA---------QILLGEFEPAEI 709 +A + A WR + ++ A Sbjct: 723 IHAARYREATCHALVERIDAIAAAEFPSHGPLWRRPVVLLQAIAHAGAALAARRWDDACA 782 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 L+E AR + L + L Q+G A+ L +A+ LA+ G Sbjct: 783 ALDEAAVLAREMSLGGARIEIMALGAFALEQSGHDGRAR--LDEAMNLADMFGLTRTLAD 840 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPE 829 A+A R++ I + + A V P Sbjct: 841 THPAVADWARRIGDE----------------AIERDAPARSAQPQPRIVPPAPRSTASPR 884 Query: 830 LIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 + + LT +E +L L+ SN++IA L V T+K H++NL+ KL + R+ V+ Sbjct: 885 AVPSVVLTPKERAILELLARSLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHVVRR 944 Query: 890 AQQLLKMMGY 899 A L + Sbjct: 945 ALVLGLLESA 954 >UniRef50_A1U449 Regulatory protein, LuxR n=2 Tax=Marinobacter RepID=A1U449_MARAV Length = 891 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 181/908 (19%), Positives = 315/908 (34%), Gaps = 67/908 (7%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANN-FRLALITSPAGYGKTTLISQWAAGKNDI--GWY 62 +L P T+ R L + A RL + +P GYGKT + A D+ W Sbjct: 34 RLRVPSVPGDTLARPNLDRIICQALQPGRLLQLEAPGGYGKTHALVSALASAPDVNVRWI 93 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP 122 SL+ GDN R S L A+ A +T L + E Sbjct: 94 SLNAGDNAPSRLLSILAIAL------GLAEVLPPNGGTFEDHMTMLLVNRGRQAREARE- 146 Query: 123 LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 LV+D+ H +TNP + + + H P L++ + SR L + +G Sbjct: 147 -VLVLDNVHYLTNPAVSGLLHQLVTHLPSGLSVAMASRLSVPFESHTLELNGNNTRLGPD 205 Query: 183 QLAFTHQEAKQFFD-CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 L F+ E +FF R S I + + GW T L L +Q Sbjct: 206 TLEFSRSETFEFFAKARSDSLITSVAIDHLFGLTEGWPTPLALYRRELKQGGE------- 258 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE-ENGQMRLEE 300 R A + +L D + + A L A + S +D L + M E Sbjct: 259 RRALHETPSVERFLKDCIAAQLGSAQLKSLRAIAEMDSCSDELFFAIEPSVSESGMPPSE 318 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +GL L+ + G W+ +PL +L+ + A+ + + EA Sbjct: 319 AADRGLPLKPVPGRGRWYRLNPLLQAWLQTPVMGGYITRM----LMASRWFEQRQQFPEA 374 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 + +A+ AGD+ + I +L + + L K LP + L + +L ++ W+ Sbjct: 375 LKYAVLAGDSDEVVRIASESTEALLLGQDTASLLSLRKNLPAELLERSARLRIVYGWVHA 434 Query: 421 SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP 480 ++ + LL + D A AL+A + +G A +A+ AL + Sbjct: 435 IGGQFQQAKQLLE----DFNDRDRKEHEARIYALKAFILRGEGFVQPALAMAEKALAKGG 490 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 +++V V L G + + ++AR+ ++ + I Sbjct: 491 MSTQ-AQLVTQIVRSSALCAAGCFQEARDANRIASKLAREAGDSGSEALAVYAHARIELG 549 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL-----LWAWARLDEAEASARS 595 +G L+ A + +++L + R QL LW RL EA+ + Sbjct: 550 KGALRHAEQLLRTGLDTA----MQELSRPARIGETRLQLNLVLVLWHQGRLTEADRLLVN 605 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW-ISNANK 654 + L +A+ + A+G +D+A + R E + + + Sbjct: 606 CARHAEQTRDLGLLLAMALRVLMCRAQGRMDDAFVWIGRAERTMHTWQVDESLYLPVLEA 665 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN------IARAQILLGEFEPAE 708 ++ W G + +A + RA + G+ A Sbjct: 666 LKASCWLAQGQQESAMQAIAKLEPYRKGGCVPELFPMMPGLLDCLQVRADMANGDLVRAR 725 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 L+ ++E LL L A++ L + A+R FIS F Sbjct: 726 EHLDAVSEKYEGGMPWGLQLHAGLLDAVLLEAEKGLPAARKRLESVVAQASREHFISPFA 785 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 + + + + + + + E A Sbjct: 786 ELMKELGPLMDKCYRHLDNGDFTAALGRLFGCEPVAPAADPLA----------------- 828 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 P++ RE VL LI G SN++IA +L ++ T+KTH R + KL V R A+ Sbjct: 829 -----EPISDREQGVLELIAQGLSNQEIADKLHISLHTVKTHARRINAKLDVKSRTQAIV 883 Query: 889 HAQQLLKM 896 A++L + Sbjct: 884 RARELGLL 891 >UniRef50_Q46PW4 Regulatory protein, LuxR n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46PW4_RALEJ Length = 911 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 207/906 (22%), Positives = 334/906 (36%), Gaps = 57/906 (6%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW------AAGKNDI 59 KL+ P TV R+ LLA + LAL+ S G+GKTTL+SQW A+ + Sbjct: 38 KLAPPHTQLETVPRDALLADMRAHATCALALLVSAPGFGKTTLLSQWRRCLLQASDGACV 97 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLDE D + RF +Y++ A+++A + +R A L LA Sbjct: 98 AWLSLDEADAEVNRFLAYMLLALEEAGLDIDGLSPLARSQRLDEQPQRTVAALLQALARH 157 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 P+ L++DDYH + E++ + L LVV SRN P +A LR R + E+ Sbjct: 158 GRPVTLILDDYHRAECAAVDEALLTLLERGGRWLRLVVSSRNRPSWPLAALRARGLVHEL 217 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L + EA Q F + +E + + GWA ALQL L + + SA Sbjct: 218 DAASLTLSMAEASQIF----GAALEGPALATLHAKTEGWAVALQLARLWLARGSGSA--F 271 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 S +++YL ++++DN+ R FLL++++L N L G ++ L Sbjct: 272 GLPSFSGRVSEVAEYLAEQIVDNLPADCREFLLETSLLERFNADLADVARGRDDSARMLT 331 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + + L +D WF YH L +F AA EIHRAAA + Sbjct: 332 RLSQFDALLVPLDPGRSWFRYHLLLADF---LRARLPAARAREIHRAAAGWLARNDDLVQ 388 Query: 360 AIHHALAAGDALMLRDI-LLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 A+ HA A D + + + W L + E L + P+L L+ A+L Sbjct: 389 AVSHARAGDDTALALRLVVDAGGWELVLRKGIRYTENLLSQFDELATRAEPELTLMHAYL 448 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER--LAKLAL 476 + LL A +D + ++ A+ A V + D+ ER ++ A Sbjct: 449 QAKLGKEALALELLRLAHVAAQDTP--ALKRDYGAIEAVVHVYFDIFDDYERWPVSGNAA 506 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 ++ P ++ + G + + ++ + + L+ ++ Sbjct: 507 QQRIPDDPLAQGIQLCARAVGSLAWGRMDDVMQAVRAARVQMQLIASPLGENYCLMHEAL 566 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 L G + + + A + + + AQ L+ E R G Sbjct: 567 ALAMTGEMACSRQLLSDALRQAEANFGTDSSLKGIVGCFWAQHLYWQGEWKETPPWIRDG 626 Query: 597 IEVLSSYQPQ-QQLQCLAMLI-QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 L A + + +L L A S L+ G ++ + Sbjct: 627 NATLERTDGWLDVFASHAEVAWRTALRLEGLQPALSVLDDAAR-TGRERHLDRLVHLVQA 685 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ-WRNIARAQILLGEFEPAEIVLEE 713 RV G A A R A + + G WR + + L A Sbjct: 686 WRVDLLSQCGLAAQALQEARAADLESAAAHSPVPGLGWRRLEAVTLALARLALANGASAA 745 Query: 714 LNENA-------RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 LM R LL +A + A ++ A+ R G Sbjct: 746 AQARLEAAAGVFEPAGLMLPAWRLRLLALVARRKAQDGNVAPALVEAAMAPVVRFGLSGL 805 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 + G A+ L A + L R AH Sbjct: 806 LLETGPAILPILPD----------ANSEAGQSLGAAVSQLRGWQAHP------------- 842 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 + R + + +E QVL L+ SG SN+ IA L+V+ T+K H++ ++QK GV +R A Sbjct: 843 ---VRRRAQFSAKEMQVLALLASGQSNKAIARGLDVSENTVKFHLKQIFQKFGVDNRAGA 899 Query: 887 VQHAQQ 892 V A Q Sbjct: 900 VSQAMQ 905 >UniRef50_UPI0001C312D5 ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312D5 Length = 758 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 158/684 (23%), Positives = 262/684 (38%), Gaps = 16/684 (2%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWYS 63 +K P TV + ++ +L + LA + +PAGYGKTTL+++WA A W + Sbjct: 14 AKFVVPATRPGTVGKAEIVGRLRSSG-APLATVLAPAGYGKTTLLARWAQADPRPFAWVA 72 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 LD D+ F + A+ + + + ++ +LTS ++ LA PL Sbjct: 73 LDARDDDAVMFLRSVAMALHRILPLSRQVLDALSGPGG-PTLTSRVPRVGSALATVERPL 131 Query: 124 YLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQ 183 LV+DD H + + + + + + PE + V SR P L + R + +L EIG Sbjct: 132 VLVLDDLHEVASTSCLDVLAALLDYVPEGSQIAVASREAPALPLGRWRAQGRLDEIGVND 191 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L + +EA+ ++A S+ + + GW L L ALS R ++ +A Sbjct: 192 LRLSQEEAR-LLLAAAGVELDAGASAALVERTEGWPAGLYLAALSLRAGAPASAGAAGFA 250 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 + +SDY E+L + A FL +SA+L M +L V LE +E Sbjct: 251 G--DDRFVSDYFRQELLSRLPAAEARFLQRSAVLERMCGSLCDSVLETARSARMLEGLEG 308 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQW-ELAAELPEIHRAAAESWMAQGFPSEAIH 362 F+ +D GEW+ YH LFG LR + E A + ++ A +A G A+ Sbjct: 309 TNCFVVPLDRRGEWYRYHHLFGELLRDELERSEPPAVVRTLNGRAMAWCIAHGEQEAAVR 368 Query: 363 HALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQ 422 + AAG+ + ++ L+ + LEE + + L P L + AWL Sbjct: 369 YGQAAGETDAVAVLVDALGLPLYYDGRMETLEEWIGWFGEEELTRYPALAVYGAWLRMLT 428 Query: 423 HRYGEVNTLLARAEHEIKDIREDTMHAEFN--ALRAQVAINDGNPDEAERLAKLALEELP 480 R+ E LA AE I A + + ++A LAL+ LP Sbjct: 429 GRHAEAERWLAMAERATSTIPLSDGSASIEPWVANLRACMMRDGVEQALVDGDLALQRLP 488 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 P + R A V G V G R+ + + + + + Sbjct: 489 PESAW-RPAALVVRGAVHALSGAEGRATDDFSAAVKTGLAFGSADVVFVAEAELALLALK 547 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG---I 597 +G A E A L+ + L + A++ R ++ A+ Sbjct: 548 RGAWTEAGERARAAVALVEDTGLGDYSTSAIAHVVAARVALHEGRREDGRAALARAHRLR 607 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 +L P +Q L + LA D AR+ E +L + + ++R Sbjct: 608 PLLDEGIPWLTVQVGLELTRAHLALADPGAARTVFEESERILALRPQLALLVDEMRELRG 667 Query: 658 IYWQMTGDKAAAANWLRHTAKPEF 681 G A +W E Sbjct: 668 HVAATAG---PAGSWAMSLTGAEI 688 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 65/396 (16%), Positives = 115/396 (29%), Gaps = 25/396 (6%) Query: 507 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQL 566 + + + + + L+ G ET E+ E+ L + Sbjct: 359 AHGEQEAAVRYGQAAGETDAVAVLVDALGLPLYYDGR----METLEEWIGWFGEEELTRY 414 Query: 567 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD 626 P L A L R EAE S+ + + A D Sbjct: 415 PA---LAVYGAWLRMLTGRHAEAERWLAMAERATSTIPLSDGSASIEPWVANLRACMMRD 471 Query: 627 NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT-----AKPEF 681 L + L S W A VR ++G + A + A Sbjct: 472 GVEQALVDGDLALQRLPPESAWRPAALVVRGAVHALSGAEGRATDDFSAAVKTGLAFGSA 531 Query: 682 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 741 + + +A + E L E+ + ++ ++ Sbjct: 532 DVVFVAEAELALLALKRGAWTEAGERARAAVALVEDTGLGDYSTSAI-AHVVAARVALHE 590 Query: 742 GRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 801 GR+ D + L A + + EG L L A R + E Sbjct: 591 GRREDGRAALARA-------HRLRPLLDEGIPWLTVQVGLELTRAHLALADPGAARTVFE 643 Query: 802 INQHHRHKFAHFDENFVERLLNHPEVPELIRTSP-----LTQREWQVLGLIYSGYSNEQI 856 ++ E V + LT E ++L + + + +I Sbjct: 644 ESERILALRPQLALLVDEMRELRGHVAATAGPAGSWAMSLTGAEIRLLPYLATHLTFPEI 703 Query: 857 AGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 AG L ++ T KT ++Y+KLG + R +AV+ A + Sbjct: 704 AGRLFISRNTAKTEAISIYRKLGASSRSEAVERAVE 739 >UniRef50_C0D7B4 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D7B4_9CLOT Length = 887 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 171/910 (18%), Positives = 326/910 (35%), Gaps = 86/910 (9%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDI 59 + + K + + R+ LLA+ A +++ G GKT W + Sbjct: 33 VFLSDKFTPARLPEVCAPRKSLLARFDEAAEDGFVFVSAQGGSGKTVTTLLWLNKSGHTP 92 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W LD DN F L + + + + A+ +L EL Sbjct: 93 VWIGLDGYDNSPSVFYKLLATGLYSLQPDNENLGRILTDPAFSATPVEHTVELLSELRPE 152 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 +V+DD+H ITN I +S+ +R P T +LSR + ++ + Sbjct: 153 VGKYVIVLDDFHQITNGEIIKSLPMILRRLPHTFTFFILSRGEIPPELLPFVKDEKKDIL 212 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L FT E K++ + L + E+ + GWA + IALS + Sbjct: 213 HREALRFTESEIKRYLN-TLGHFLTPDEAKLVYMATDGWAIGVNAIALSGK--------- 262 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 +AG + + + + D ++F ++++I + L ++G ++ +E Sbjct: 263 ---VAGSGGDGFARFFENMAWNAWDAELQNFCMRTSIADEFDTELAAALSGRDDAHAVME 319 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 ++ R FL R+ G+ + YH LF FL+++ + E +++ AA + S Sbjct: 320 DLSRSNSFLSRL--HGDTYRYHHLFQEFLQKQLKSSGTDE-AMLYKTAARYYKDHEDYSR 376 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHS---ELSLLEESLK-ALPWDSLLENPQLVLLQ 415 A+ L +GD + L + + L + LP + E P L +L Sbjct: 377 ALRFWLQSGDYKGTDNFLFLFLFRGHKNGVADYADFLHGFFQNPLPERASREAPVLHVLY 436 Query: 416 AWLMQSQHRYGE----VNTLL------ARAEHEIKDIREDTMHAEFN-ALRAQVAINDGN 464 AW R+ E ++ +L A+A +E + H ++ L+ QV + Sbjct: 437 AWYYYLTSRFEEYAKHMDAILRNLPRIAKAGNEFVEFAMLAFHVDYRKTLKTQVTLFHLF 496 Query: 465 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 524 + + L S + E+ + ++ + + Sbjct: 497 GGVLKSYTQTGLA----TNIASFTHNLPYMHRSNRDYSEIALNPKILDKIDHTYAPLLGP 552 Query: 525 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR-AQLLWAW 583 + + + + L+ A LI + P V + +LW Sbjct: 553 EWVYLRPGILASFTYERSQLEAALVQNTDVLGLI---GPDNKPDGRICVMVLQHSILWQM 609 Query: 584 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK 643 R +EA + + A + L GD AR L + + + + Sbjct: 610 GRFEEAGKAMDALAAFADESAQYFLPNLTAYRAKWELLDGDKSAAREWLAKY--YVTDTE 667 Query: 644 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 703 + + S + + G+ +A +L +LL E Sbjct: 668 HIEFFRSFQHFTTARAYAALGEMESALRYL-------------------------LLLRE 702 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 F ++L D +L LYW +K +A+ L + L++ GF Sbjct: 703 F-------------GKNLNRPLDRCEAGAILAALYWTLNQKKEAEAELTETLEVLQPYGF 749 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 + EGEA+ L++++ E + + E+ H F + ++ Sbjct: 750 VRVVADEGEAVVPVLKRILSTVGGKEYTGPLTRAYVNEV-MLAAHSFGSRHKGYLAEAGR 808 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 E R L++++ ++L L+ GY N +I+ ++ TIK+H Y+KLGV + Sbjct: 809 -----ETGRPVKLSKQQTRMLTLLAQGYKNAEISEMTGLSIPTIKSHTSLAYKKLGVNNA 863 Query: 884 QDAVQHAQQL 893 DAV A++L Sbjct: 864 MDAVLKAKEL 873 >UniRef50_A5V9B6 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V9B6_SPHWW Length = 879 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 171/909 (18%), Positives = 322/909 (35%), Gaps = 59/909 (6%) Query: 9 RPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS----QWAAGKNDIGWYSL 64 P ++ V R R+ +++ A ++ L+ P G GKT+ ++ AAG + W +L Sbjct: 5 PPRLIEPLVARPRIARRMAEAA-GKVTLVVGPPGSGKTSALASHHADLAAGGAAVRWLTL 63 Query: 65 DEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLY 124 DN S+L A + A + ++ + Sbjct: 64 SAEDNDPAILRSHLDHAFRGAGAEGRDEGDGLSDP--------------------PENIV 103 Query: 125 LVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQL 184 ID I + F+ P + + + +R + + +R + IG +L Sbjct: 104 GFIDGLEKIDAAPARALIGAFVLELPPSSSFHITARRMKGAMFHDGWLRGVVEVIGPDEL 163 Query: 185 AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 T EA + RI + V GWA L+ +A + R + R Sbjct: 164 RMTDDEAAALL----GEAWSPWDRQRINEAVDGWAAGLRFVARAPRSAERLLDGTGER-- 217 Query: 245 GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQ 304 +++YL D V +D A+ L+ ++L + + G ++++ R+ Sbjct: 218 -PFPVEMANYLDDVVCARMDAASLAALMDVSVLDRFTPEALAAMPGRPCDWAQIDDHIRE 276 Query: 305 GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHA 364 G F++ +D+ W +HP+FG LRQR + ++R AA + A GF +EAI HA Sbjct: 277 GSFIRYVDEQRCWAAFHPVFGRHLRQRLRRFDPDRFDALNRFAASWFEANGFGAEAIRHA 336 Query: 365 LAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 + D+ ++ N + + + + +P E P L L Q + + R Sbjct: 337 VTVADSAFAARVIENVGAIHVDLCDGPDV-GLGERVPATRAGELPLLFLGQIYFAIRRGR 395 Query: 425 YGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER--LAKLALEELPPG 482 E L A + + A+ ++R + D D ++ + + L EL Sbjct: 396 SVEARAALEEAGRQTRGFTLLDRGADPESIRGFAQLIDMVLDASDDRPITEQRLAELERA 455 Query: 483 WFYSRIV-------ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 R V +L + + +++ I Q+ Sbjct: 456 MEVHRGVRPILSSGVACMLALAYLELSRYAEAATVCGIGLHAMHDVKDSRVSVFLRIHQA 515 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 +I A+ + A E A ++ +RA L + LD A A Sbjct: 516 DIAVARDTVDKAVLYIEDAQRIARIGSGVDNYEVIATRILRAGLHYENNELDAALALLDP 575 Query: 596 GIEVLSSYQPQQQLQC--LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 + L S +L + R +D A +L R L + + Sbjct: 576 SLRQLGSINAWVRLCASGFGTAAAIAGIRHGIDAAEERL-RAGEALARERNLPRLLQFMA 634 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ--------GQWRNIARAQILLGEFE 705 R+ G+ AA + L +AR I LG Sbjct: 635 IARLRELTRAGEWRAAMEHVESPGFAGLLATDSLSHAVLGVQVPAMLEVARLMIELGRPH 694 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A+ L+ +N+ ++ + + R + A + A++LA+ G + Sbjct: 695 DAQAWLDRINKPFLGEADSRFRFTFRIMAMRAAYGMRRYNAAVDHMQAAVELASHAGLVR 754 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 + + + + I+ +H RI ++ R +++ Sbjct: 755 RALNNRQHLTEVFDWSIRNG------RHLPARIGAYVDDVLRGADGTESGATLQQSSPRR 808 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 V + L+ RE +++ L+ GY ++IA L ++ T+KTH + +++KLGVA R Sbjct: 809 GVEQAPNNFTLSPRETEIIALVAEGYITKEIAVRLGISEGTVKTHRKKIHEKLGVASRSQ 868 Query: 886 AVQHAQQLL 894 A+ A+ LL Sbjct: 869 AIARARDLL 877 >UniRef50_C7Q4U6 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q4U6_CATAD Length = 935 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 200/942 (21%), Positives = 341/942 (36%), Gaps = 91/942 (9%) Query: 9 RPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-----IGWYS 63 RP RL + R+ L+A+L A ++ +IT+PAG GK++L+ WA ++ I Sbjct: 19 RPNRLP-LIARDGLVAELDQAAAGKVTVITAPAGSGKSSLLRAWADRQDRQHRLAIVQVP 77 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 D+ D Q F L+ V++ + A A A+ + ++ +LAE + Sbjct: 78 RDQPDGQL--FWLSLLTTVRRLSGEPIAADPPAAAPEFSAA--TAVERILEKLAEIPERV 133 Query: 124 YLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQ 183 L+IDD H +T P + + P+++++++ +R L + LR+ QL ++ + Sbjct: 134 SLLIDDVHELTAPETFADLTRLLADLPDHVSVILATRRNLPLRLHRLRLTGQLTDLRAAD 193 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L F+ E + + A +R+ + GWA L+L LS + A Sbjct: 194 LRFSEDETRALLAAS-GITLSDAGVARLLERTEGWAAGLRLAVLSLTGHPDPERFVAEF- 251 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 G + +++YL+ E+L+ + LL+++IL ++ L +TG + L ++E Sbjct: 252 -GGSNRTVAEYLLAEMLERQPQDIQDLLLRTSILTRISGELADALTGRVGSEPILLDLED 310 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHH 363 F+ +D WF YH LF + L+ + E +HR AA+ + G EAI H Sbjct: 311 ANAFVVSLDAERTWFRYHHLFADLLQLELRRVHPDEGRGLHRRAADWFAEAGMTVEAIRH 370 Query: 364 ALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQH 423 AAGD ++ +HA+ + +L ++ L+A P + P L +++A + Sbjct: 371 TQAAGDWSAAANLFSHHAFGMMLDGQLETMQSLLEAFPTGPAADLPALSVVRAMVDVWHG 430 Query: 424 RYGEVNTLLARAEHEIKDI-REDTMHAEFNALRAQVAINDGNPDEAERLAK-------LA 475 R E LA A+ A+ +AL +A G+ D RLA+ A Sbjct: 431 RLDEAAAHLAAAKAGPDPAPPSARAEAQISALELVLARRRGDVDTVLRLARVLAVSTTSA 490 Query: 476 LEELPPGWFY----------------------------------------SRIVATSVLG 495 P R++ LG Sbjct: 491 YACPPASACALAVEAGSDSESESESGSDSVSTPTSTSAAVSADELALGADLRVLVLMNLG 550 Query: 496 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 555 V G L + ++AR + + L Q + E+A Sbjct: 551 IVEAWAGGLADGATYLTHAVELARVIGRPYLEVTCLAQLAFATKLHS-FAETRRVCEQAV 609 Query: 556 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ-LQCLAM 614 L + P+ + A L + + + E L L Sbjct: 610 ALAARHGWDTAPVLAPALVTLACLQVFTGEFEHGQDTIDRAEEALLLDAGADIGLLHRTT 669 Query: 615 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 674 +G L A ++ +L +Y G AA + Sbjct: 670 KGMLHATQGRLAEAEAEFAAAYDLQSQMRYPHALSGYVAGWLAAAKARRGSTDAARAVID 729 Query: 675 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 734 F + + A + G+ A V+ + + S + L L Sbjct: 730 KLDATLFDSGEIRNAR----AVIALREGDVAGALDVVTPVTNGSASAVHATTLVEANALE 785 Query: 735 NQLYWQAG---RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 791 Y ++G + AQ + AL A I V M L + Sbjct: 786 ALAYHRSGIPASAARAQEAVERALAAAEPERLILPLV-----MVGAGEVLETVPRQRSAH 840 Query: 792 QHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGY 851 IL I+ A + P VPE L+ E ++L + + Sbjct: 841 ASLLTDILDIIHGSAPAATAS----------DQPAVPE------LSPTELRILRYLPTNM 884 Query: 852 SNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 S QIAGEL V+ TI TH+R++Y KL R AVQ A++L Sbjct: 885 SRPQIAGELSVSVNTISTHVRSIYAKLQATDRASAVQRAREL 926 >UniRef50_C8XC62 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XC62_NAKMY Length = 884 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 215/912 (23%), Positives = 365/912 (40%), Gaps = 60/912 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK---ND 58 L+ + P L V R RL L + + L L+++ G+GKT ++ W + + Sbjct: 8 LVTLRTRPPSTLPAGVRRRRLETALDRSFDRVLTLVSAGPGFGKTVTVASWVQLRQIDHC 67 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W +LD + F S ++AA++ ++ A + + L +LA+ Sbjct: 68 FAWLTLDHFADSVHGFWSDVLAAIR-FSDAVPADSPLHEISPASSFGSREVDSLLAQLAD 126 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 P+ LV+DD+HLI NP + ES+ + QP L LV+ +R P L + LRV QL E Sbjct: 127 LRRPVVLVLDDFHLIRNPEVLESIATLLDRQPSKLRLVLTTRADPVLPLHRLRVAGQLTE 186 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I S+ LAFT +E+ F + A + + GW L+L A++ + +A Sbjct: 187 IRSRDLAFTLEESADLFVLE-GFALTAEQLDDLYRRTQGWPAGLRLAAMTLDRADLAA-- 243 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 S R+ G + +++YLV EVLD + A R FLL+++I+ + L R+TG ++GQ L Sbjct: 244 SINRVTGSD-RAIAEYLVGEVLDRSEPADREFLLRTSIVDRLCADLADRLTGRDDGQQAL 302 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 + R + +DD +W YHPL LR R E A +PE+ R AA ++ +G P Sbjct: 303 GRLLRSNALVTALDDRDQWVSYHPLLRELLRHRLLLEHRAIVPELQRRAAAWFVERGDPI 362 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL--VLLQA 416 E++ H++ A D L+ + E +L +++ L D + +P L +L A Sbjct: 363 ESLRHSIRAQDWDGAGRTLMLCIPKIL-SVEAPILAAAIRPL-ADRAVTHPGLFPLLAAA 420 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNAL--RAQVAIND---------GNP 465 Q Y V+ + A + ++ + L ++A Sbjct: 421 ASHLQQQDYAAVHQNIVDARQYVDSAPDE-LRPLITVLLELFEIAYCRLVGDATGLANQC 479 Query: 466 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 525 D+ RL P + R +AT+ LG +L + ++ + Sbjct: 480 DKVLRLVDEIPRRDLPLAPHFRAIATANLGAAQLWTDDLGAAELTFADGDRQLNDLGLEL 539 Query: 526 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 585 L ++ QS + G + A +A L++ + L +L A + Sbjct: 540 TLLNTVSFQSVMEAMTGRCRRAERRARQALALVDRRGWGSETQSFALHLALGMVLNARGQ 599 Query: 586 LDEAEASARSGIEVLSSYQPQQQLQCLAMLI-QCSLARGDLDNARSQLNRLENLLGNGKY 644 DEA + G+ V + + LA+ + ++ R D+ A R L Sbjct: 600 ADEAMRAFGRGLSVSRTQSDRMVRLGLAVGAVEAAVLRSDVAGAMEADARARAGLAR--- 656 Query: 645 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN--IARAQILLG 702 + + AA E A++ W+ +ARA + LG Sbjct: 657 -TPGTPIRMRCWADVAGAQTLIAAGLPQEAIERLGEPADDRGFSAVWQRAWLARAHLELG 715 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD--AQRVLLDALKLANR 760 A +EEL L L + D A A++LA Sbjct: 716 ----ALHRVEELVRPVIEPGWQYREPVILARLLLAIAAEKQHRDGLALTHFTAAVELAQP 771 Query: 761 TGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVER 820 G F+ +A L + L+ ++ I AH VE Sbjct: 772 EGIRRPFLQLASRLAGPLHRYQVLDG------PNTAFVVECIGAAPAD--AHSPAGQVEH 823 Query: 821 LLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 LT+RE VL + + +IA +L V+ T+K H+R++Y+KLGV Sbjct: 824 ---------------LTERELIVLKYLPTMLKAGEIADDLFVSVNTVKAHLRSMYRKLGV 868 Query: 881 AHRQDAVQHAQQ 892 ++R++AV+ A+ Sbjct: 869 SNRREAVERARS 880 >UniRef50_A3JA10 ATP-dependent transcriptional regulator, MalT related, LuxR family protein n=2 Tax=Bacteria RepID=A3JA10_9ALTE Length = 970 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 187/919 (20%), Positives = 329/919 (35%), Gaps = 79/919 (8%) Query: 11 VRLDHTVVRERLLAKLSG-ANNFRLALITSPAGYGKTTLISQWAAGKN----DIGWYSLD 65 L +VR L L G L I P GYGK+ +Q + I W +L Sbjct: 92 KHLQGLLVRPELNQVLMGSVVPAGLLNIYGPCGYGKSAAATQALLASDFSSAHIRWVTLS 151 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 DN ERF L A+ Q H Q A+ A L P L Sbjct: 152 AQDNAPERFLMLLAVALNQPEPSHSGAFADGLQWLLAATERPDSASLL--------PQVL 203 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 V+D+ I+NP ++ + + P L L+ +SR + +L ++++ +G +L Sbjct: 204 VLDNLDAISNPAALALLQQLVDNLPAQLRLLGISRGPLAISTHSLELQNRFTSLGPDKLE 263 Query: 186 FTHQEAKQFFDCRLSS-PIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 F+ E +FF + + + GW T L L R R A Sbjct: 264 FSRSEVFEFFASEVQQQKLTTVSVDNLYSLTEGWPTPLALYRGELRSGRE-------RKA 316 Query: 245 GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN----------- 293 + + + +L D VL + A + L A L +D L + Sbjct: 317 LQDTASVQRFLADAVLGHYTNAQQFALRALAELDVFSDDLFASLADTTTELALSPSQTAL 376 Query: 294 ----------GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEI 343 Q+ + +GL + M G W+ +PL ++L+ A + Sbjct: 377 AQATPIRVTLSQLVPSQAVERGLPAKLMAGRGRWYRLNPLLLDWLQTPALNGSAQRM--- 433 Query: 344 HRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWD 403 +E + + SE + +AL + D +R + + +L + + L ++LP Sbjct: 434 -LRVSEWFAQRRQYSEGLKYALMSADVGQIRRMAAEGSEALLLGQDTASLLRLRRSLPAT 492 Query: 404 SLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG 463 +L NP+L L+ W+ + + L+ EH K D AL+A +A G Sbjct: 493 ALAANPRLRLVFGWVHAIGGQCRQATDLV---EHLGKVETHDIPLGRIQALQAFIARGQG 549 Query: 464 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 523 + A LA+ ALE+ P ++V V L G + ++ ++ARQ Sbjct: 550 QVEPALVLAEAALED-PELSVQGQLVTQLVRSSALCALGRFADARQASREAARLARQAGD 608 Query: 524 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI-NEQHLEQLPMHEFLVRIRAQLLWA 582 ++ + I ++G L+ + E L A +LW Sbjct: 609 TGSEALAVYAHARIELSKGELRHTEHLLRSSLDTAMQELARPARVGEIRLQLNLALVLWH 668 Query: 583 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 642 R + + + L + + + ++ D A + + R E + + Sbjct: 669 QGRYQDVDRVLAVCTRQAEQTRDLGLLMAMCLRVLICRSQSHFDEAFAWIARAERTMQSW 728 Query: 643 KYHSDW-ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN------IA 695 + + + ++ W + AA + A Sbjct: 729 QVDGELYVPVLEALKASCWLAQRETDRAAQAMAKILPYRQAGYSPELFPTMPGLMDCLQV 788 Query: 696 RAQILLGEFEPAEIVLEELNENAR-SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 754 R + GE+ A L L R S+ + D++ +LL + L + + A + L+ Sbjct: 789 RIAMARGEYGAARTRLNGLRAGYRDSVPMGVDIHMSLLDVALLA-REKSPAQAVKRLVSI 847 Query: 755 LKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFD 814 ++LA + FIS F + + LRQ T +L L ++ A Sbjct: 848 VELAAKEHFISPFNELKQELEPLLRQ-----TFDQLPTGVFTDALVKLFGIKAATSATRV 902 Query: 815 ENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNL 874 + P+++RE VL I G SN+++A +L ++ T+KTH R + Sbjct: 903 I--------------VPLAEPISEREKGVLECIARGLSNQEVADKLHISLHTVKTHARRI 948 Query: 875 YQKLGVAHRQDAVQHAQQL 893 KLGV R A+ A++L Sbjct: 949 NAKLGVKSRTQAIVRAREL 967 >UniRef50_C8XCA9 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XCA9_NAKMY Length = 846 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 185/881 (20%), Positives = 341/881 (38%), Gaps = 51/881 (5%) Query: 26 LSGANNFRLALITSPAGYGKTTLISQWAAGKND-IGWYSLDEGDNQQERFASYLIAAVQQ 84 + A + LI++ G GKT ++ WA N + W S+ D+ F + L+AA++ Sbjct: 1 MDRAVAAPVTLISAGPGSGKTLALADWAQSTNRRVAWLSVGASDDALPAFWAALVAALRA 60 Query: 85 ATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRF 144 + + + + + ++ LA+ +PL +V+DD H + + + S+ Sbjct: 61 SGASVGSGLSDLLPAASFGEQDAR--RVVDTLAQMRAPLTIVLDDLHHVRDRHVLRSVET 118 Query: 145 FIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIE 204 P ++V +R P L L V D+L+EI + QLAF EA Q + Sbjct: 119 LFECLPPTAHVIVSARFDPPLRWRRLAVADRLVEIRADQLAFDAAEAGQLLTMV-GLRLG 177 Query: 205 AAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVD 264 A R+ + GWA L+L A + +N A S R + ++DYL+ EVLD + Sbjct: 178 PAPLGRLVERTRGWAAGLRLAASALDRNAPEAAVSRLR---GSDRPVADYLMQEVLDQLP 234 Query: 265 LATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLF 324 A R F+L+S++ ++ + +TG + Q RLE +E F+ + WF +HPLF Sbjct: 235 DADRDFVLRSSVADPVSAEMAQALTGVVDAQARLESLEATNGFVVGLAGGRTWFTWHPLF 294 Query: 325 GNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDIL-LNHAWS 383 L R E ++H+ AA + QG AI H A D + +L A Sbjct: 295 RELLLHRLTVEKPGARDDLHQRAARWLVGQGDYLAAIRHLTAVADWPGVGRLLTERLAPD 354 Query: 384 LFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIR 443 + + +L+E + N +L A Y + + A Sbjct: 355 VVTSAASALVEALTPVANRAEVDPNATTLLASAVCNFHHSEYAAMIRDVEAA-EAAARRE 413 Query: 444 EDTMHAEFNALRAQVAINDG-NPDEAERLAKLALEELPPGWFYS-------RIVATSVLG 495 + + E A ++A + +P R A+ LE P R +AT+ LG Sbjct: 414 HNPIAVEVLASSLRMAHSRALDPATLTRTARRVLEVTRPISRPDVPALERYRAIATTNLG 473 Query: 496 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 555 L G+L+ + + + + ++ + + L + + + G + A E A Sbjct: 474 SGLLLDGDLSAARSALIEAQKSCNRWGLGLSELTARGGLALLAALHGQPRIALERARAAR 533 Query: 556 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 615 ++ P + + + EAE G ++ ++ + Sbjct: 534 ATADQYGWAPEPQAAAHMTALVIVALDTGEVQEAEQLLGLGTRD-TNLALASRIMFAVLA 592 Query: 616 IQCSLARGDLDNARSQLNRLENLLGN---GKYHSDWISNANKVRVIYWQMTGDKAAAANW 672 +Q ++AR DL +A + L + + W+S A ++ D Sbjct: 593 LQAAIARDDLSSADRRAGLLALTAQRIALPRLLAGWVSVAQAEHLLAHGRVEDARQVLGQ 652 Query: 673 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 732 + P + N+AR + + A L L + + R ++ R + Sbjct: 653 ISDGGYPA-------ARRDLNLARCHLAQDDPRRALQSLTALIPSLSAYRTVAVHARVVA 705 Query: 733 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 792 + + + + + A +L DA++LA T + F+ G+ + L Sbjct: 706 AVAAIRLR--KDAQALDLLTDAVELAAETSMLGPFLAAGQPLRPLL-------------- 749 Query: 793 HRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYS 852 R + ++ + +P LT+RE VL + + + Sbjct: 750 ARYRTVVGRHAEFTTAALGGVPPG-------EQPIPVAANGQELTERERAVLPFLATHLT 802 Query: 853 NEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 QIA EL ++ T+K+H + +Y+K GV+ R+ AV + L Sbjct: 803 ATQIAEELFLSVNTVKSHQQAIYRKFGVSSRRAAVDRGRDL 843 >UniRef50_C0ZTT3 Putative LuxR family transcriptional regulator n=1 Tax=Rhodococcus erythropolis PR4 RepID=C0ZTT3_RHOE4 Length = 857 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 165/879 (18%), Positives = 302/879 (34%), Gaps = 50/879 (5%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWAAG------KNDIGWYSLDEGDNQQERFASYLIA 80 G+ + L+++PAG GKT L++ WA D+ W +L E DN L Sbjct: 12 EGSGPGSVGLLSAPAGAGKTLLLANWAREYSRASPDVDLAWLTLAERDNNVSVLCESLAE 71 Query: 81 AVQQATNGHCAICETM---AQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPV 137 A+ + AQ + A + L++DD H + +P+ Sbjct: 72 AISTPLDPAGRAPTGQGFPAQAGSSRPVEQWLAHFAETVEAHDRRTTLILDDVHTLHDPM 131 Query: 138 IHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDC 197 + + H P+NL+++V +R P L L + +L S LAF E F Sbjct: 132 SIGLLDQILTHTPDNLSIIVAARYEPPLTWHRLALDGRLTRFASTDLAFDRTEITAMFGE 191 Query: 198 RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVD 257 + E + + + GW ++L A + A ++D+LVD Sbjct: 192 -YDITLGDDELAIVENFTKGWGAVVRLTAAFLAGRSDIGD--ALNEFTHTPRPIADFLVD 248 Query: 258 EVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMD--DTG 315 EVL ++ F+L+++++ S + L +T + N + ++ + + + R D D Sbjct: 249 EVLTSLPEHVTTFMLRTSVVDSFSAQLAETLT-DSNARSEIDALIQYNFPVTRTDSADHT 307 Query: 316 EWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRD 375 WF YHPL LR + E H AA + + F EA+ ++ GD + Sbjct: 308 TWFSYHPLLLEHLRAEFRRVDHEERNRAHLRAATWFESHHFELEALELEVSIGDPCRILA 367 Query: 376 ILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARA 435 L L + L++ P + E+P L+ A T L Sbjct: 368 FLERCGLGLVLDGHSGDVVRVLESAP-TQVSESPITRLVLAAAALHSGDVTSATTCLDLL 426 Query: 436 EHEIKDIREDTM-HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVL 494 E I ++ + A + +D NP L + A + Sbjct: 427 EATHPPIADEPLFLAMSLEISCASPTSDNNP-----LVSRLVRRQNSTHSDVEAYAHLEV 481 Query: 495 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 554 L K E R+ Q + + L +L + G ++ A Sbjct: 482 ATALLLKREFDRATVEYTQAVALGTLRGRSRFVLKALTGLGFVASLSGDIEAMRAHSTYA 541 Query: 555 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 614 E + +E + A + A + G + + Sbjct: 542 IDYAVEHRITTTAEYELSASVVAFAAYLCATSELPYRIPTIGNYRSTDVLGA-SVPAFGW 600 Query: 615 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 674 + L +A + + ++ + + + + + Sbjct: 601 HTVVTFGLHSLGDAADRRSTAADVRDAMLSAIALRTFSLATLALLPPVVNACLSVGEVEW 660 Query: 675 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 734 A + F + ++ARA + + AE ++E + + L Sbjct: 661 AGRLVRDAADEFGETSEIHLARAAVAFSSNKFAEALVEVSEALGSTEEPVLAHTVYAWTL 720 Query: 735 -NQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 793 ++ G + + R L AL+ A G + F+ G ++ + Sbjct: 721 EAGIHAATGHERKSFRSLHKALRAAETGGLLRPFLDYGASLRPIFDEFSGHFGD------ 774 Query: 794 RAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSN 853 E F E++ N EL+ LT E+ VL + SG + Sbjct: 775 --------------------QEAFAEQVRNRIRPQELVSAPILTPGEYTVLRELASGDTT 814 Query: 854 EQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 E IA L ++ TIKTH+R +Y+KL V++R+DA++ A++ Sbjct: 815 ESIADTLFLSVNTIKTHLRGIYRKLEVSNRRDALKAARR 853 >UniRef50_B5HWH8 LuxR-family transcriptional regulator n=9 Tax=Streptomyces RepID=B5HWH8_9ACTO Length = 894 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 191/905 (21%), Positives = 335/905 (37%), Gaps = 56/905 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIGW 61 + ++ + P R + R RL L+ L ++ AG GKT L++ W A + W Sbjct: 29 LRTRFAVPSRPATFLPRRRLTQHLAEGLRTPLTMVNGSAGAGKTLLVADWTASLDRPVAW 88 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 +++ + F +Y + A+ + A + + + +++ +L Sbjct: 89 LTVEAEKQRPGTFWAYFLQALSASGTELSDRVHCPADPNRIS--RKVLSEIAEDLVGRDP 146 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 +V+D++ ++ + E + F ++H L L++++RN P L + R L EI Sbjct: 147 APIVVLDEFDRVSASEVAEQLEFVLQHAGSGLRLILVTRNEPMLSLHRYRAAGTLTEIRD 206 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 +LA +EA + + A + + GWA L+L AL+A+++ Sbjct: 207 AELALNPEEAAALLELH-GLSLPADAVRSLVERTRGWAAGLRLCALAAQESPDPERYLKE 265 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 + S ++D+L+ EVL AT+ LL+ ++L L+ R+T + + L E+ Sbjct: 266 F--EADHSTVADFLLAEVLRRQPPATQDLLLRVSVLDRFCPDLVNRLTHRTDAALILAEL 323 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 R F++++ W+ HPLFG L+ + P++HR+AA+ +G EA+ Sbjct: 324 HRDNAFVEQL--GQGWYRLHPLFGEILQTHLRVRHPGLEPDLHRSAAQWMRRRGALPEAL 381 Query: 362 HHALAAGDALM-LRDILLNHA-WSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 H AA D ++ + A F L E + + P L++A Sbjct: 382 AHGAAADDWGFTAAAVVDDLAIGQFFTDLRSDDLNELFSRMGPE--ATGPATELVRAARD 439 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAE--FNALRAQVAINDGNPDEAERLAKLALE 477 + L E + ED A+ + L A A G+P AE+ A+ A E Sbjct: 440 LAHSDLDRGVAHLHHVETWLSAAPEDPAAAQLSWAFLEAVAARLAGSPARAEQAAEAADE 499 Query: 478 -------ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 L + + LG G + A + + S Sbjct: 500 VRPEVPPHLLDKHPELSALLLTHLGSTRLWAGHYEDARAALSEAADCPGGILTVLPREES 559 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 + + + + G+ A A L Q + A + L A+ Sbjct: 560 MGHLALLDYLDGWPGRAEHQALAAMTETERFSLPQPSGSGIERLVLAAVAVDRHELGRAQ 619 Query: 591 ASARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 A E+ L + P + + LARG+ A S W Sbjct: 620 ALLDEAAELDLDTQDPVKAAGRAIATARLHLARGNARAAM----ESATPALTTTVTSPWA 675 Query: 650 SNANK-VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 + + V G AA LRH + A AR Q+ G A Sbjct: 676 DSLERLVTSAVHLAEGRAETAAEVLRHLPDDQPA-------WTVEAARIQLAAGRPGAAI 728 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 +L+ ++ R + R L+ Q AG A+R + AL LA R F+ Sbjct: 729 DLLDSVSAERRPG--PAVTVRAALVRAQAAQMAGDTETARRFVAQALLLARRERLRRPFL 786 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 G + L L A+ ++ + A P Sbjct: 787 DAGRWIRPLLA-------TAPLRSLAAEWLVPGPVTGNGPGAAG-------------PRP 826 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 I L++RE VL + S E+IA +L ++ T+KTH+++LY+KL V R +AV Sbjct: 827 APIVVQELSERERDVLQRLAQMMSTEEIAVDLYLSVNTVKTHLKSLYRKLAVNRRSEAVH 886 Query: 889 HAQQL 893 A+ + Sbjct: 887 RARDM 891 >UniRef50_A4XRD7 Regulatory protein, LuxR n=2 Tax=Pseudomonas RepID=A4XRD7_PSEMY Length = 868 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 197/901 (21%), Positives = 329/901 (36%), Gaps = 78/901 (8%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG---WYSLDE 66 P + R L +L A+ RL L+ +PAG GK+ L+ Q A W L Sbjct: 20 PRLPPAVISRLPLEQRLL-ASEARLRLLCAPAGAGKSVLLGQCARQTPAAVARLWLDLGG 78 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 + + L AA+QQ A L L L++ Sbjct: 79 RSLTPAQLCTRLAAALQQPATDVNE------------------AALLEMLQAHSGRLWIF 120 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +DDY + + + P +T V SR P + L ++ LLE+ Q LA Sbjct: 121 LDDYPRQPDGELDACLDRLFAAAPAQITWWVASRRTPAWNLPRLLLQGDLLELEGQDLAL 180 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 + L + R+ GW A++L+ L + + R+ Sbjct: 181 DEVGLAELLTA-LQLNLGEDLGQRLLQSSEGWLAAIRLLLL------DADEDALRQRLQA 233 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 L DY+ EVL ++D R L A+L + L + G L E++R+ L Sbjct: 234 GCPLLRDYVQREVLADLDDELRSDLHALALLPRFSAPLCEHLLE-GRGSELLAELQRRQL 292 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALA 366 F++R+D +G WF LR + A +H A + + G EA+ HAL Sbjct: 293 FVRRLDSSGTWFRLWRPLAAVLRSLPGGLVPA---PVHVRACQWFARHGDIREAVEHALQ 349 Query: 367 AGDALMLRDILLNHAWSLFNHSE-LSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRY 425 AG + + L + ++ L + + LP +P+L++LQAW + R+ Sbjct: 350 AGQVEVAVNYLQRFSQEQLLQGHSVAQLLQWREELPAWLFASSPRLIVLQAWALIICARF 409 Query: 426 GEVNTLLARAEH---EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG 482 E H + R+ + A + AL +A G D A + AL+ L Sbjct: 410 DEARACTEALTHFLPQPDARRQRKLLAHWQALSGVLARQCGRRD-ARQHCLEALQALDDS 468 Query: 483 WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 542 + RI+ L + + L ++ + + +++R H Y + +L QG Sbjct: 469 GWSQRILCYQALAQQYLAENALDQARQALDEGLRLSRLHGSLIYEALLNTDRCLLLEMQG 528 Query: 543 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 602 A E E++ L+ + P+ L+ +RA LL + A + R G++ Sbjct: 529 EAGRAAELAEQSLTLLR-GRVSHSPVVGRLLLLRASLLARQGLDETARQAYRQGLQEAEF 587 Query: 603 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-----KYHSDWISNANKVRV 657 + + ++ + A GDLD A L + E ++ +Y A ++ + Sbjct: 588 CEDAYTISGYLGQVELAEACGDLDEAYQWLQKAERVMQCSHVPEVRYRGVLQLQAGRLLL 647 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW----RNIARAQILLGEFEPAEIVLEE 713 Q + A L+ + + R +A + +LLG AE L Sbjct: 648 RQEQYGRAREVFAQTLQQLQQRQQLAPSGFYDLLPRLRRYLAVSDLLLGHHAAAEHALRL 707 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 L + + S + L + G A+ +L AL Sbjct: 708 LLDECQMAGHRSLSCECRVALAESLLLQGHDEQAEALLQQAL------------------ 749 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV---PEL 830 L + + R+ R ++ +RL P P Sbjct: 750 ---------GEARQLRLLRPLLELQQRQPQWLERLLPGEAGQSLHQRLFQPPPTLDEPAS 800 Query: 831 IRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 T+ L+ RE VL LI G SN++IA L ++ T+KTH R + KLGV R AV A Sbjct: 801 AGTALLSSRELAVLQLIAQGCSNQEIADRLFISLHTVKTHARRINVKLGVQRRTQAVAMA 860 Query: 891 Q 891 + Sbjct: 861 K 861 >UniRef50_Q4KI37 Transcriptional regulator, LuxR family n=3 Tax=Pseudomonas fluorescens RepID=Q4KI37_PSEF5 Length = 848 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 193/902 (21%), Positives = 322/902 (35%), Gaps = 85/902 (9%) Query: 9 RPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN---DIGWYSLD 65 P H R RL A L A+ R+ L+ +PAG GKT L+++ + W L Sbjct: 11 MPRLSSHHFSRSRLSAPLL-ASGARVKLLCAPAGSGKTALLAECLQQAPETCRVSWLPLS 69 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 G + + + L A+ + A + LA +P ++ Sbjct: 70 GGRHSPQGLCAALAQALGLERDDE--------------------ATVLQHLAHLQAPAWI 109 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 IDDY + + + + LT + R P L + DQL E+ LA Sbjct: 110 FIDDYCRVAAADLDLLLDRLLSLDNPQLTWWLGCRRRPLCNWPRLLLDDQLFELDGPALA 169 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAG 245 F+ E +Q RL P+ A +SRI GW +++ L + + + Sbjct: 170 FSQIEIEQLLQ-RLPQPLCAQTASRILQRSGGWCAGVRIALL------EGSELTIQPCKP 222 Query: 246 INASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQG 305 + L +YL E+ + A L N L + G G L ++ Sbjct: 223 GRPNTLLEYLEHELFSVLPAELAQVWQVLAHLPRFNAELCEHLFGVGEGAQYLRTLQDMA 282 Query: 306 LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHAL 365 F++ D G+W P +R HR A + ++AQ A AL Sbjct: 283 CFIEPWDGGGDWLQVFPPLARLMRDEAWPGG----RSWHRRACQWFIAQEDWQSAFEQAL 338 Query: 366 AAGDALMLRDILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 A + + +L + ++ LF LL + + + LL +P LV L M R Sbjct: 339 RAEEYEVAVSLLEHFSFEFLFQQDNALLLLQLHERHGGELLLVSPHLVGLLVAAMLFAGR 398 Query: 425 YGEV---NTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 + + +AR + ++ + A + A + + G A + AL+EL Sbjct: 399 FEQAGQCMAQMARFAPQPSAAQQRQLLARWQAQQGWLLHLSGRMAAARQHFIEALDELAD 458 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 + +R++ S L + EL + AL ++ +AR D + + +++L + Sbjct: 459 SAWTTRLLCLSGLTQQALLGAELDVAQALNREALCLARAQDAQLFEGLLELDHAQLLEQR 518 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 G A E+ + ++ Q L P+ + +L ++A RSG+E Sbjct: 519 GAPHRAQSLLEQVCERLSMQALRATPLLGRIALRLGRLALRQGHAEQAAGYFRSGLEDCL 578 Query: 602 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRVIYW 660 ++ L Q + +GD A +L E L+ + + + +V W Sbjct: 579 LSHDKRALYGFLGQAQLAANQGDYAQAFVRLRDAERLMQQRQIPDTVYRGVLLQVSSQLW 638 Query: 661 QMTGDKAAAANWLRH---------TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 711 G A L + A + G + A++ LG + L Sbjct: 639 LQQGRPELAQEALSRLLRHFRGPQALQAPPATLELIPGIEYLLVLAEVHLGRAQAPIATL 698 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 + L A+ + L L ++ G + AQ L L R Sbjct: 699 QGLLARAQRHGMQGLEAEVQLALAEVAHLQGNPALAQEALQAGQALVQRCN--------- 749 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 L Q + L + A L+ + P Sbjct: 750 ------LPQALHELRLRQPLLLAAGEALQTPSSAG---------------------PLEN 782 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 R S L+ RE QVL LI G SN+QIA +L ++ T+KTH R ++ KLGV R AV AQ Sbjct: 783 RESLLSLRELQVLQLIAQGCSNQQIAEQLFISLHTVKTHGRRIHSKLGVERRTQAVAKAQ 842 Query: 892 QL 893 L Sbjct: 843 AL 844 >UniRef50_C1TP26 ATP-dependent transcriptional regulator n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TP26_9BACT Length = 833 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 179/905 (19%), Positives = 336/905 (37%), Gaps = 99/905 (10%) Query: 7 LSRPVRLDHTVVRERLLAKLSG--ANNFRLALITSPAGYGKTTLISQWAAG-KNDIGWYS 63 S P T+ R+R+ A L N R I +P+G+GKT IS+W + +N + W + Sbjct: 7 FSPPKYGTQTIYRKRMGAFLDKNIIQNKRWVYIEAPSGFGKTVSISRWISPLRNKLAWIN 66 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 L D+ ERF L+ A+ A + + + + + L + Sbjct: 67 LSIDDDVPERFVHKLVKAMAFAQKSNRKLAKAA---ESTGPPREVLYRSVSSLLDNDKNY 123 Query: 124 YLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQ 183 +V+DD+ I++ E + + TL +LSR P ++ + + + + Sbjct: 124 VVVVDDFQHISDNETLEILSELAINPSFRFTLCILSRKGPPKELSPSILNGNMALMTEEY 183 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L +E + +S + + GW A+ + Sbjct: 184 LVMDEEEISSMMTKHH---MSRRKSEEVISETKGWPVAVNSYLMG--------------- 225 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 + S L DYL V D R F++++A +++ + + G N + L+ I Sbjct: 226 DEGDWSLLDDYLDSRVWDRWPEEVREFMVRAAPCPRLDEDICRSLNGSRNYEPLLKHIRS 285 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELA-AELPEIHRAAAESWMAQGFPSEA-- 360 FL+ +D G + P F +L +R +L+ + EIHR + +G A Sbjct: 286 SDAFLENSEDGG--YSIFPPFREYLLRRMNSQLSKDRIDEIHRYLGRIFFDEGDYLVAAD 343 Query: 361 --IHHALAAGDALMLRDILLNHAWSLFNHSELSLL-EESLKALPWDSLLENPQLV--LLQ 415 + +G + + + + HS E L + + P L Sbjct: 344 LYVRCLCLSGLSDCCTAM-TKYRKEISVHSRFRFFKERVLGRIKFTEDEGLPLLAQSAFM 402 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQV----AINDGNPDEAERL 471 +L + R+ E+ +L + D + L ++ + + Sbjct: 403 YYLDGNAERFTEIMDMLYKRAERCGDGPFASFLTLLKVLDFRIPLNLYLERVIDGKETPT 462 Query: 472 AKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 + + + P PG F + + ++ L + +L S+ + +T R+ L Sbjct: 463 SSICFGKSPSPGTFTANM---PLMHRSLRERSDLALSMEELHKTMARYRE------PLKK 513 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 + Q I+ + A L + HLE+ H V + ++ R D Sbjct: 514 FLGQDHIILRECQF---------AGVLYEQNHLEEAYHHA--VEAQTVVMKVNCRRDVRF 562 Query: 591 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 S I +L + + + A +I C + R Q+NR +D I Sbjct: 563 CSDMILIHILKAMGRRDE----ASMIACEMER--------QINR--------DRANDLIP 602 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIV 710 N R ++GD AA WL + +R+ + L+ +PA V Sbjct: 603 NLKAWRFRERMVSGDGTAAEEWLISYGENPILQPDLY-DIYRHFTTERALIASGKPALAV 661 Query: 711 L--EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 L E+L ++ D + +LL+ YW ++ + + AL LA G++ F+ Sbjct: 662 LFGEKLLRLSQDFNRPMDELESYILLSTAYWSTDDRTRSYEYIEKALALAEPYGYVRMFL 721 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 E ++ + ++ R + R I+ FA V VP Sbjct: 722 DEALSIKPMMVSFLR----------RTKSDGRRIS-----GFASEVALAVTGTSYEDVVP 766 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 L TS L++R+ ++L L+ S IA +L +A +T K H+ LY+ LGV++ +A++ Sbjct: 767 SLEETS-LSERQMRILALLKGNGSYRDIAEDLGIAHSTAKYHVTRLYRFLGVSNGAEALR 825 Query: 889 HAQQL 893 A+ + Sbjct: 826 KARSM 830 >UniRef50_Q0B0H9 ATP-dependent transcriptional regulator-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0H9_SYNWW Length = 1111 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 183/816 (22%), Positives = 329/816 (40%), Gaps = 31/816 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK--NDI 59 L+ S+L+ P + + R+RL + R+ IT+PAGYGK+ ++ + Sbjct: 27 LVNSQLTPPHIKNS-IKRDRLQELGLSILSHRVTTITAPAGYGKSVWVASLLQEEEWPPT 85 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAI-CETMAQKRQYASLTSLFAQLFIELAE 118 W SL+ + F +LI A ++ + + T+ R + A I+ Sbjct: 86 AWLSLERYNGDPSFFLYHLIHAFKKINPEYGSQSLRTLNSLRNLKQDYFIAASAIIQELP 145 Query: 119 WHSPLYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + LV+DDYHLI N ++ + M + IR P ++V+SR P+L + ++ +LL Sbjct: 146 QDQEMVLVLDDYHLIDQNQLLPKIMEYLIRRLPLRTHIIVISRTPPKLNLHQELLKGELL 205 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI SQ L FT +E ++ + + + I GWA ++L+ LS +Q + Sbjct: 206 EISSQALLFTPEEIRELLSLE-GLVLSTEDCTYIHHCTEGWAAGVRLLGLSLKQFGGNWR 264 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + L G + + L YL E+ + + + FLL +AIL + L V G+ + + Sbjct: 265 NNLSSLTGKHTA-LYIYLSHELFNYLTRELQDFLLDTAILPYLEPILCQEVLGDTRSEEK 323 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQR-CQWELAAELPEIHRAAAESWMAQGF 356 + E+ GL L +++ + +H L FL +R + + R AA G Sbjct: 324 IHELHLMGL-LSQVESNTTIWRFHHLIREFLLERALNIRSPEYIVSLRRRAAFHLEKNGH 382 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 +A+ A D D++L +A + + L +K LP D L + QL+ + Sbjct: 383 IDQALEQLAACADWSKAADLILAYAEPYFLENGCHNALYSWIKTLPVDYLNSHHQLLYYK 442 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAI----NDGNPDEAERL 471 ++ H + +L+RA +D + + E +L A +A+ ND EA Sbjct: 443 GICLRDNH-PQKAQEILSRAAARARDKGD--VKGEIRSLMAILAVHIFGNDSTRSEAVAG 499 Query: 472 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 + + + LG+ + +L + L L + +A+ + + L Sbjct: 500 RIPVIASSLKDSWAQGFALVAALGKA-VSEDDLKQGLYL---SRLVAKTPLEPEWQFYYL 555 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + + + G L TA + EKA L Q ++ + + + A + A Sbjct: 556 LLSGVVHYRLGNLDTARQLAEKALALPLVQKSDRW--LGVAYVLLSGIYCAKGEIRPAIE 613 Query: 592 SARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 +R I++ Y P Q L Q L +G L A + L + L + Sbjct: 614 ISRQLIQLGHKYNIPHQIAYGHRRLAQVYLLQGKLVEA-RYESELCSELWLEANNGAMAR 672 Query: 651 NANKVRVIYWQMTGDKAA-AANWLRHTAKPEFANNHFLQGQWRNIARAQIL---LGEFEP 706 +A+ + + +TG+ A + + K + +++ A ++ G+ E Sbjct: 673 HADLETIFFRIITGENAKNSFQEKQDFIKIILNKQSGYGSKDYSLSIAGVIAREAGQMEQ 732 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 A LEE ++ L LL L LY G +S+A L AL LA I Sbjct: 733 ARQWLEESAASSEKKGAKQLLAGTLLNLASLYLLLGDESNADHKLHKALGLAQANK-IDT 791 Query: 767 FVI-EGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 801 F E + + + + + P+ H QR E Sbjct: 792 FWDWHPETVYKMCHRALLKSIYPQWALHILQRWFSE 827 >UniRef50_C5C615 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C615_BEUC1 Length = 749 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 155/676 (22%), Positives = 261/676 (38%), Gaps = 18/676 (2%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDI 59 +L+ +KL+ P R V R L+ + ++ R+ +T+PAGYGK+T++++WAA + Sbjct: 17 LLLDAKLAVPARRTAAVSRADLIQG-ARSSGRRVVGVTAPAGYGKSTMLAEWAALEDRPV 75 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLD D+ L +A + ++G + M + L +L L Sbjct: 76 AWVSLDTLDDDPSSLLVVLASAFARVSDGPEGLVADMVGP-DASVLGRAAPRLASALRRS 134 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 +P LV+DD H + +P H+ + + P LV SR Q + LR +++EI Sbjct: 135 PTPFVLVLDDLHELQSPACHDVLGVVVAGIPAGSQLVAASRTE-QPHLPRLRAAGEIVEI 193 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L Q F P+ ++ + + GW + L +L AR + A Sbjct: 194 VASDLVLDVAGTLQVFAASH-VPVSPEAAAAVTERTEGWPVGIYLASLIARHSGGDAVAV 252 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 +++DYL E + R FL ++A+L ++ L VTGE + L Sbjct: 253 T-----GEDPYVADYLQRESYRRLPEDMRTFLRRTAVLDNLCGPLCDEVTGEPGSREMLR 307 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 +E LFL +D WF YH LF FL A + + R AA+ + A G P Sbjct: 308 RLEASSLFLVPLDRRRWWFRYHALFREFLLGELTTVEAQLVDGLRRRAADWYEAHGSPER 367 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ L D ++ +LF +LS + + L+AL D+++ P L +L ++ Sbjct: 368 AVEQLLQTSDRERCVRLVTRLVMTLFQAGQLSTVGKWLRALGDDAVVAYPPLAVLAGYVA 427 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE-E 478 + R GE A + D A F++ RA L AL Sbjct: 428 AYEGRAGEAERWGAVVDAAAFDGEMVDGSASFDSARAMYRALRCPQGPQALLDDAALAVA 487 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 P W R A + G G++ + ++T A ++ Q ++ Sbjct: 488 SEPEWSVWRDTALTASGLARLLVGDVDGAAREFERTVAAAAAVGNADTLVFCEAQLAQRD 547 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 G + E A I E + P A+L L E G+ Sbjct: 548 MDHGQWERGRERIRHALDAIEEHRMYDYPTSAPAFAAAARLALHDGDLAETRRLLTRGMR 607 Query: 599 VLSSYQPQQQLQCLAMLIQCSLAR-----GDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 V LA+ + LAR GD+ R L ++++L + + Sbjct: 608 V--RTFCTYAFPTLAVRARMHLARTSWAAGDVAAVRHLLREIDDVLLHRPNLGVLVDEVA 665 Query: 654 KVRVIYWQMTGDKAAA 669 +R + + + A Sbjct: 666 DLRQEFGAGSRAASMA 681 Score = 65.8 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 50/393 (12%), Positives = 109/393 (27%), Gaps = 11/393 (2%) Query: 502 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 561 + + ++ + Q + + + LF G L T + + Sbjct: 356 ADWYEAHGSPERAVEQLLQTSDRERCVRLVTRLVMTLFQAGQLST-------VGKWLRAL 408 Query: 562 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 621 + + + L + + R EAE + A Sbjct: 409 GDDAVVAYPPLAVLAGYVAAYEGRAGEAERWGAVVDAAAFDGEMVDGSASFDSARAMYRA 468 Query: 622 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 681 ++ L+ + + S W A + + GD AA T Sbjct: 469 LRCPQGPQALLDDAALAVASEPEWSVWRDTALTASGLARLLVGDVDGAAREFERTVAAAA 528 Query: 682 --ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 739 N L +A+ + G++E + + R+ Sbjct: 529 AVGNADTLVFCEAQLAQRDMDHGQWERGRERIRHALDAIEEHRMYDYPTSAPAFAAAARL 588 Query: 740 QA--GRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQR 797 G ++ +R+L +++ + + M + R Sbjct: 589 ALHDGDLAETRRLLTRGMRVRTFCTYAFPTLAVRARMHLARTSWAAGDVAAVRHLLREID 648 Query: 798 ILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIA 857 + + + E PL+ E ++L + + + +I Sbjct: 649 DVLLHRPNLGVLVDEVADLRQEFGAGSRAASMATSVPPLSPAELRLLPYLQTHLTIREIG 708 Query: 858 GELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 L V+ T + I ++Y+KLG + R +AV+ A Sbjct: 709 ERLFVSRNTASSEIGSIYRKLGASSRSEAVRQA 741 >UniRef50_Q2B993 Transcriptional regulator n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B993_9BACI Length = 1077 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 130/640 (20%), Positives = 257/640 (40%), Gaps = 23/640 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIG 60 +I +KL P + + R RL AK+ + L ++ S AGYGK+T ++ + + Sbjct: 3 VIKTKLMVPPVKEGYIRRARLSAKMKAVAEYPLCIVESGAGYGKSTALALFVHDEKLPCS 62 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHC----AICETMAQKRQYASLTSLFAQLFIEL 116 WYS+ D+ F S L+A+V+ A +I E + + + + SL + E Sbjct: 63 WYSISSEDDDIIPFLSCLVASVRLAHPDFGTEILSILEQLDRYVKEEEIRSLASLFLNEA 122 Query: 117 AEWHSPLYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLGI-ANLRVRD 174 A + L++DD+H + + I+ M + H P NL L++ SR+ P + +RV D Sbjct: 123 ALHGENILLILDDFHQVEHSYTINCWMETLLEHIPPNLHLIISSRSRPGWKLLKKMRVTD 182 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +LLEI + L + E + + I+ + RIC GW A+ +I Sbjct: 183 KLLEIKKEDLVLSRDEVELLLNELYGISIKQGDLDRICLATEGWVIAVGMIGQQLTDKKS 242 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 ++ + + + L YLV EV + FL +++I M + L V G Sbjct: 243 ISNLFGA--SSGSLADLFQYLVTEVFAKQPPLIQQFLEQTSIFDDMTEELCNEVLGIAGA 300 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 L+++ + LF+ ++ + + + YH LF FL ++ + ++ A ++ Sbjct: 301 GAMLQQLTEKNLFIHKVGE--KVYRYHALFKEFLEKQLKAGQPHSYRLLNERCARHFVRS 358 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 +A+ H G + IL + + +L L + + +P + + L Sbjct: 359 LQWDDALKHFEKIGSTEEMASILSDQGLRMLETGKLGSLSDRIAGIPGQTKDRFYPVWFL 418 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + +++ + Y E R+ ++ A +A++ ++ P +AER+ Sbjct: 419 EGEVLRYRSSYQEAELAYDRSATGADGKKDLIWKARALEGKARIYLDTIQPHKAERILSQ 478 Query: 475 ALEELPPGWFYSR---IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 A++ R +L E L G+ ++ M++ E M Q + Sbjct: 479 AIQLKEGDIRGGRDEPARLYHLLAENLINAGQAAKAEKWMERAESMGHQ-------MLDK 531 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + + G L + + A + + H + A + EA+ Sbjct: 532 SLLARLYLRTGKLAESRKIL-MAGRKTKSEGKPLPKSHRETDLLLALIEAFTGNGAEAKK 590 Query: 592 SARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARS 630 ++ GI+ +S+ P + L + G+ D+A + Sbjct: 591 LSQEGIQQGISTKAPFVEACGWIRLGHAAQLLGEYDSALA 630 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 51/353 (14%), Positives = 98/353 (27%), Gaps = 26/353 (7%) Query: 512 QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 571 + + L Q + G L ++ + + P Sbjct: 362 DDALKHFEKIGSTEEMASILSDQGLRMLETGKLG---SLSDRIAGIPGQTKDRFYP---- 414 Query: 572 LVRIRAQLLWAWARLDEAE-ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS 630 + + ++L + EAE A RS + + L + L A Sbjct: 415 VWFLEGEVLRYRSSYQEAELAYDRSATGADGKKDLIWKARALEGKARIYLDTIQPHKAER 474 Query: 631 QLNRLENLL-GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 689 L++ L G+ + D + + G A A W+ H + Sbjct: 475 ILSQAIQLKEGDIRGGRDEPARLYHLLAENLINAGQAAKAEKWMERAESM----GHQMLD 530 Query: 690 QWRNIARAQILLGEFEPAEIVL-EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 748 + +AR + G+ + +L + L LLL + G ++A+ Sbjct: 531 KSL-LARLYLRTGKLAESRKILMAGRKTKSEGKPLPKSHRETDLLLALIEAFTGNGAEAK 589 Query: 749 RVLLDALKLANRTGFISHFVIEGEAM-----AQQLRQLIQLNTLPELEQHRAQRILREIN 803 ++ + ++ T + FV + AQ L + EI Sbjct: 590 KLSQEGIQQGIST--KAPFVEACGWIRLGHAAQLLGEYDSALAEKCYRTSLDIMDRLEIE 647 Query: 804 QHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQV----LGLIYSGYS 852 + + ER + T+R + L LI G S Sbjct: 648 RGKAEPLMGLCILYGERNDYSKSMDAGKAGLQETERVKDMWLSSLILISMGIS 700 >UniRef50_A9WAL3 Transcriptional activator domain n=3 Tax=Chloroflexus RepID=A9WAL3_CHLAA Length = 1170 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 183/781 (23%), Positives = 307/781 (39%), Gaps = 20/781 (2%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 +L+ +K++ P + +VR + A+L A ++R+ L+ + AGYGKTT +++ A + Sbjct: 84 VLLQAKVAPPRPHRYRLVRPAVTARLREAFDYRVTLVQAGAGYGKTTALAELAMSSATVC 143 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATN--GHCAICETMAQKRQYASLTSLFAQLFIELAE 118 WY++ E D F +YL AA A+ + A T L LA Sbjct: 144 WYTIGENDRDPVSFLTYLAAACAPVLPQGAPEALATLRSHPADRAVWTQTVDGLLNALAG 203 Query: 119 WHS-PLYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRDQ 175 P+ L++DDYH + I I + P L+L++ +R G + R R + Sbjct: 204 SPRRPVLLILDDYHFVAASAEIRALTERLITYAPPWLSLLIATRYPIVSGELVRWRARGE 263 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 +LE+ LAFTH E F + A+ + GW ALQL+ R Sbjct: 264 VLELHRDALAFTHDEIAALFRDVFGMALSDADVDLLDHHTEGWPIALQLVWQGLRSGQAR 323 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + + + L D+L +VLD FL +A LR + A V ++ Sbjct: 324 SVSELLASGPASLAALFDFLASDVLDRQPPEIASFLRATAPLRVLTAAACDAVRQADDSD 383 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 L ++ + LF+ +D + + YH LF +FLRQ Q +L E HR AA + A G Sbjct: 384 QLLAQVRDRDLFVVELDASH--YRYHHLFHDFLRQ--QTRSDPDLAERHRRAARHYAAAG 439 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 EAI+H AAG+ + D ++ + L L + + ALP + + P+L Sbjct: 440 QAEEAIYHWFAAGEVAIAADAIVAAGEDALRNGRLDTLTDWIDALPAELIASRPRLQSYL 499 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 L + + R+ E A+AE + + A +A V I+ P +AE + + A Sbjct: 500 GDLYRLRARFDEARNWYAQAETISRQHGDRAELARALYGQALVYIDQVQPVQAESVLQEA 559 Query: 476 LEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 L +R +L E G+ + AL QQ Q+ + + Sbjct: 560 LRVSEGLEDQVARARVLELLAENKLNMGQPDEAEALQQQARQLRAASPAADLLSARVKLR 619 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 + L A L AW +E+ + H V + A + +D+A + A Sbjct: 620 TGQLAAARTLLQAWRDRERVATARGATPAPRG--HREAVLVLALIAAFEGDVDQALSLAE 677 Query: 595 SGIEVL-SSYQPQQQLQCLAMLIQCSLARGDLD--NARSQLNRL--ENLLGNGKYHSDWI 649 G++V + A L L + L +AR + + L D + Sbjct: 678 EGVQVGTERHSRFITSVAYARLGHAWLLKSALTGVSARDRALEYYRQALAEGQAIGVDRL 737 Query: 650 SNANKVRV-IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR--AQILLGEFEP 706 + + + GD AAA N G + R + +L G+F+ Sbjct: 738 RVEPLWGLTRLYGLAGDLAAAENAAVDGQAFCRWAGDLWLGAMIQLQRGVSHLLGGQFDR 797 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 A+ +L + R+ L L Y++ + A + +AL L+ G+ Sbjct: 798 AQEILLAARADLRACSDRFGQAVATLWLALGYYEQRHDAAATAAIDEALDLSATAGYDYL 857 Query: 767 F 767 F Sbjct: 858 F 858 >UniRef50_A6V205 Probable transcriptional regulator n=7 Tax=Bacteria RepID=A6V205_PSEA7 Length = 827 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 196/904 (21%), Positives = 320/904 (35%), Gaps = 106/904 (11%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND---IGWYSLDE 66 P + R RL L RL L+ +PAG GKT L+ + A + W +L Sbjct: 12 PRLPPQHLPRPRLHQPLLRG-ECRLRLLCAPAGSGKTVLLGECARQAPPGVQVAWLALGG 70 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 F L A+ +G A S L+L+ Sbjct: 71 EALDPATFRRRLAGALGLPEDGDEAQ--------------------LCRRLRNASALWLL 110 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +DDY +P + + + ++ + SR PQ + L + +L E+ + QLAF Sbjct: 111 LDDYPRCPDPALDACLDRLLSAASPRVSWWLASRRRPQCNLTRLLLEGELREVDAGQLAF 170 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 E +A + + + GW AL+L L + Sbjct: 171 DLTEVVDLLRLH-GRRADADAAVALLERSGGWCAALRLGLLVGEEQAGPL---------- 219 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 L +YL E+LD++ L A L + L R+ L+E+ +G Sbjct: 220 ----LQEYLQHELLDDLSLPLADAARALAWLPHVGSGLFRRLFESL--PQGLDELLARGF 273 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALA 366 LQ D + + + HR A + G EA+ ALA Sbjct: 274 PLQT--DGLQRYRLPAAIREV----WRTSPHRPQAAFHRCACHWFAEHGETREAVDQALA 327 Query: 367 AGDALMLRDILLNHAWSLFNHSE-LSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRY 425 A + +L H + L+ LP L P+L++L AW + R Sbjct: 328 ADEPETAAALLQKLTEEQLLHGHNIGLVLALRDELPAALLASTPRLLILNAWALLYAGRL 387 Query: 426 GEVNTL---LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG 482 E LAR + R+ ++ A++ L + G A +L + ALE LP Sbjct: 388 AEAEACIGQLARFQPMPSAARQRSLLAQWQGLYGILLHCRGERGAAGQL-REALEHLPED 446 Query: 483 WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 542 + ++ S L ++ +G + ++ + + ++AR+HD + + +++ L ++G Sbjct: 447 AWSQGLICHSALMQLAMIEGRMDQARLVGRDALRLAREHDSLIFEALIELDRAQWLESRG 506 Query: 543 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 602 L A ++A + + + + PM + RA+L R EA R G+E + Sbjct: 507 ELVRAESVLDRAQRYLEDLGQQGSPMLGRITLRRARLCLQQGRDGEAGQWYRQGLEQARA 566 Query: 603 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA-NKVRVIYWQ 661 + L L +GDLD A ++L +E L+ A V Sbjct: 567 NRDPWVLYGYLGLALLEAGQGDLDAAFNRLLEVERLMQQRHVPDSLYRGALLLVSAALTL 626 Query: 662 MTGDKAAAANWL---------RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 712 G A L + +A A++ G+ AE L Sbjct: 627 QQGRPHQAREILLRVRAYFQPGRARLSPPSEPELEARVEHQLALAELYGGDSAAAEARLR 686 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 L + + L + + + + AG+ + AQ+ L L+LA R G Sbjct: 687 GLLAVLEAQGRQTLLCEVRMAIAECQFLAGQLTQAQQSLRSGLELAGRLG---------- 736 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 Q R + Q FA E L Sbjct: 737 ----------------------LQLPQRRLRQRQPQLFAALPGEDEEGL----------- 763 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 SPL+ RE VLGLI G SN++I +L ++ T+KTH R + KLGVA R AV A+ Sbjct: 764 -SPLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKA 822 Query: 893 LLKM 896 L + Sbjct: 823 LGLL 826 >UniRef50_Q0BZ97 Transcriptional regulator, LuxR family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZ97_HYPNA Length = 897 Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats. Identities = 170/914 (18%), Positives = 332/914 (36%), Gaps = 56/914 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 L+ SK++ P +L + R L+ +L L ++ +P GYGK+ L+S+W A Sbjct: 18 LLRSKVTPPRQLLSLIRRPDLIQRLETGAEGSLIMLEAPGGYGKSCLLSEWKDQSARQGA 77 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W ++DE D+ E F +YL + A + + + Q + Sbjct: 78 KVCWLAIDE-DDDVETFIAYLAYSAHIAGIDTAGSGLLNFELSSDGNPSQAIWQFLARIE 136 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 P+++V+DD+ ++ V + +R PEN TLV+ SR + + R + Sbjct: 137 RSGHPVHIVLDDFERLSPAVSRLVIPTLLRRLPENATLVIASRGAVDISTVDFDHRGLVT 196 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 +G L+F QE + + R + + R+ + GW ++L+ ++ T Sbjct: 197 RLGPADLSFGLQEMTRLWKGR----LTPRQIERLSEWTEGWPVLIRLLLTASDMGTFDIR 252 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 G + Y +++L +D FL ++++ + I V +++ Sbjct: 253 HIDE--PGYRDMAIPAYFEEKILSRIDWDLMVFLREASVFEEIPFDAIQEVLDQDDPDFW 310 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 +E FL + + HP+ +LRQ + + AA + +G Sbjct: 311 -RRLESLEAFLVPLSGERSGYRLHPMMREYLRQTLSEQQPGRYGALQVRAANWYSDRGNH 369 Query: 358 SEAIHHALAAGDALMLRDILLNHAW-SLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 A+ HALAAGD +L +IL L+ L + L + + ++P L++ Sbjct: 370 VRAVKHALAAGDETLLIEILEQTGGIRLWLQEGLIEFRAIDRHLKPEIVQKSPTSALMRC 429 Query: 417 WLMQSQHRYGEVNTLLA--RAEHEIKDIREDTMHAEFNALRAQVAINDGNP--DEAERLA 472 ++ + + L A H + +D + +R +A+ GN D+ + Sbjct: 430 VILMKSGKQSDAAALYDGIIARHRARIAADDLLSISSTVMRVMLAVYGGNKINDQDVQQI 489 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + A+ + + + H G+L ++ + + + ++ I Sbjct: 490 EDAIRRPERVFEHFEGFILTFKCLAAHQAGKLRDAIQFAHEALDVFHVSGSLYGEVYIHI 549 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA- 591 + I + +A LI + + I + A D+ + Sbjct: 550 HLAMIHSFMRQTDESVGEFRQASDLIRRDLSFEGGIKYLNDVIAIEARHEHAPYDQKDMP 609 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLI---QCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 ++ + L + + A Q LA G LD+A L+ + + S Sbjct: 610 RLKNLVARLLRAEGWIDIYSGAFRTLSEQIYLA-GSLDDALHVLSLALDFSRRNRITS-L 667 Query: 649 ISNANKVRVIY------WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 702 R I + +G A A + + ++ + G Sbjct: 668 TRICEAQREILSLISSAPRQSGGGAVAHDAYDPIPALATSPWRVVEAECERHLHL-ARSG 726 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 E P + ++ + + R LL + + +L +AL NR G Sbjct: 727 EVTPNLERVTAFRDDQLAEGNLRVATRISALLALV-SSGRDLERSLGILEEALD-DNRFG 784 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 + FV +++ R ++ ++ R Sbjct: 785 RATLFVE----------DILRAQIAGAGLAARFPQLFARLSARPRPAAG----------- 823 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 E P R S +TQ+EW VL ++ G +++QIA + V I+ H++N+Y KL Sbjct: 824 ---EAPGGRRESIVTQKEWAVLRELHKGQTDKQIALTIGVTEHAIRYHLKNIYAKLNART 880 Query: 883 RQDAVQHAQQLLKM 896 RQ+AVQ A L + Sbjct: 881 RQEAVQRAAALGLL 894 >UniRef50_Q67R98 Transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67R98_SYMTH Length = 1080 Score = 366 bits (940), Expect = 2e-99, Method: Composition-based stats. Identities = 185/856 (21%), Positives = 309/856 (36%), Gaps = 36/856 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIG 60 ++ SKL P HT+VR RL +L A + L ++ + GYGKTT + + A G Sbjct: 7 VLKSKLLPPRLRRHTLVRPRLHQRLLEALDVPLTIVQAGPGYGKTTALVSFLSAAPCRWG 66 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYA--SLTSLFAQLFIELA- 117 WY++ D F +LI AV A G + Q T + L +L Sbjct: 67 WYAVSAEDQHPLPFLLHLIHAVNAAVPGLGERAAALLQSAAGPHRPWTQVVDALTADLHG 126 Query: 118 EWHSPLYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRVRDQ 175 L +V+DD+H + NP I + FI H P ++ L + +R P L G+ R Sbjct: 127 HAGQELLVVLDDFHHVDENPQIVALVEQFIEHMPHHVHLALATRRRPPLSGLPRWRALAD 186 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 ++E+ + LAFT E ++ F + + +++ + GW ALQL R+ S Sbjct: 187 VVELSEKDLAFTPAEVEELFLDQYGIRLTDEQTAALAARTEGWIIALQLAWQGLRKG--S 244 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + + N L DYL EVLD R FLL + +L ++ +TGE + + Sbjct: 245 SLQDFWEGQPKNLDTLFDYLAHEVLDRQRPFIRRFLLTTCVLERLHPRACDHLTGEGDSE 304 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 L +E GLF Q + D F YH LF FLR++ + A H AAA ++A G Sbjct: 305 RVLAALEESGLFTQAVGDGE--FRYHQLFHQFLREQA-RQDPASWRTHHLAAARYYLAAG 361 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 A HH G+ D +L A + + L L LP ++ P L+L Sbjct: 362 SAETAAHHFAEVGEFDQAADAILQAADGMIEAGRVEALGAFLARLPQETYSRFPALLLRC 421 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 + + R+ E +A + + +D A+V ++ +P +A+ A Sbjct: 422 GDVARLTSRFDEALAYYGQAAEKYAVLGDDRGRCLALMGEARVYLDTISPGKADDALVEA 481 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 R ++L E +G + + A A + + Sbjct: 482 QRLAHALTDRERADLMALLAENETNRGRP-------ENAARFASMAAASTGAPVDDLLEV 534 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 L G L A E+ L + H + + + + A Sbjct: 535 RSLLRTGRLAEAMRILER---LARQGLAGASRAHREVPLLISYIAALMGDTRLTRTGAEE 591 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL----NRLENLLGNGKYHSDWISN 651 GI + + ++ + ++ + + D + L+ Sbjct: 592 GIRLGKEKRSP-FVEGVGLMRRAHALQLDPHAPDEAVAAEYQAAIALMDEINVTRGKAEP 650 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEI 709 + + Y G+ A A ++ +A+ A + F ++ + LG E AE Sbjct: 651 LAGLALFYGHRAGNWAQAEHYGLESARIARAACDQWFHGYALLSLGSSAAALGRTE-AEG 709 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 L E + + L + L + + + AL A G+ F Sbjct: 710 YLREAEKEFAATGDPYGLALARVWQALLAHRQRDWAGFAASMESALAAAQEHGYGYLFTR 769 Query: 770 E---GEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 G Q L L+Q + A R+L EI + RL Sbjct: 770 RTLFGPQDPQALVPLLQEARRRGIHPAYATRLLAEIGMTDPE----HHPGYTLRLRTLGA 825 Query: 827 VPELIRTSPLTQREWQ 842 +T+REW+ Sbjct: 826 FQAWRGRQEITRREWR 841 >UniRef50_D2S7N2 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S7N2_9ACTO Length = 766 Score = 365 bits (937), Expect = 5e-99, Method: Composition-based stats. Identities = 168/696 (24%), Positives = 261/696 (37%), Gaps = 36/696 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIG 60 L+ KL+ P V R RL +L + ++ + AGYGK+TL++ WA + Sbjct: 11 LLAGKLTVPQVPPSLVPRPRLQHRLDAVRRTPVTVVAAGAGYGKSTLLAAWARHAGMPVA 70 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +L ++ RF +Y+ A+ +T L +L A Sbjct: 71 WVTLGSSEDDPARFWTYVATALAGSTPDVAGPALRALTVPSVDPLDVAVPELLNGFAARD 130 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 P LV+DD H +T+ + E + F + H P L +V+ SR P +G+A LR R +L E+ Sbjct: 131 EPTVLVLDDLHEVTDARVTEGLEFLLDHLPPALRVVLASRTEPPIGLARLRARGRLTELV 190 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEA-----AESSRICDDVSGWATALQLIALSARQNTHS 235 + L FT QEA+ + + A + + GWA L L AL+ R Sbjct: 191 AADLRFTVQEARALLTSVVHGGPDDPGPEPAALAGLLARTEGWAAGLVLGALTLRDR--- 247 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 AH A D+L+ EVL R LL+SA L + L V G + Sbjct: 248 AHGRAVPHGPPGLRSAVDFLLAEVLAGQTPDRRELLLRSAPLDRLCGPLCDAVLGRADSG 307 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 L +ER G+F+ +D G W+ HPLF LR+ + A + E+ R AA + QG Sbjct: 308 AVLAGLERDGVFVTAVDGDGRWYRVHPLFRAALRREL--DDPAGVAEVQRRAAVWFWEQG 365 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 EAI L AGD+ D L+ + + + + E L + ++ L+L Sbjct: 366 LVEEAIRARLGAGDSAGAADWLVRSTGTFLATARVGVFAELGNRLDPAVVADSVPLLLSL 425 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDT-------MHAEFNALRAQV-AINDGNPDE 467 AW R V LL RA + + R ALRA + +P+ Sbjct: 426 AWAAGVTGRLDRVPALLDRAAAQARAGRPGAGFPGFAGAVGAIAALRAVYGTTAEASPEV 485 Query: 468 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 527 A A A+ +VA LG L G +LA + Q + ++ Sbjct: 486 ALAAAHEAVAAETDPELPGWVVARVALGGALLTAGREAEALAALDAAWQAPAASALPVFS 545 Query: 528 LWSLIQQSEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ-------- 578 + Q G + +A +L+ + + L A Sbjct: 546 HLEVAGLLAWCLVQPGDDDPDPDRDARAERLLRSTRADAAALEAHLGDAAAAALALLHAA 605 Query: 579 ---LLWAWARLDEAEAS-ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 634 L RL A A R+ + V P + L + +LA GD A L+R Sbjct: 606 AGVLDRRAGRLGSARAHSDRAAVLVEVQAHPAVAVLVLVSAAETALAAGDPTAALEFLDR 665 Query: 635 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 670 + + ++ G +AA Sbjct: 666 ARE----ARLSAPPSPILDRQIAAVELRAGRRAATR 697 Score = 65.8 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 10/162 (6%) Query: 736 QLYWQAGRKSDAQRVLLDALKL----ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 791 L +AGR A+ A L A+ + V E L L L+ Sbjct: 608 VLDRRAGRLGSARAHSDRAAVLVEVQAHPAVAVLVLVSAAET---ALAAGDPTAALEFLD 664 Query: 792 QHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGY 851 + R R+ + + A + R PLT+RE VL + Sbjct: 665 RAREARLSAPPSPILDRQIAAVELRAGRRAATRVRP---ALLEPLTEREVSVLRALRGPL 721 Query: 852 SNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 S ++ L ++ T+K++ R+LY+KL V R++AV+ + L Sbjct: 722 SQREVGAALHLSINTVKSYTRSLYRKLDVGSRREAVERGRAL 763 >UniRef50_A1HM46 Transcriptional activator domain n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM46_9FIRM Length = 1066 Score = 365 bits (936), Expect = 6e-99, Method: Composition-based stats. Identities = 169/787 (21%), Positives = 304/787 (38%), Gaps = 33/787 (4%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDI 59 +L+ SKL+ P + ++R L AKL+ + + + ++++ AGYGKTT + Q Sbjct: 5 VLLRSKLNMPKLDNDVILRTALKAKLADLDKYPVTVVSAGAGYGKTTALVQALTQMSVPC 64 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHC-AICETMAQKRQYA---SLTSLFAQLFIE 115 GWY+ D+ F++YL A++ G +AQ+ ++ + L A L Sbjct: 65 GWYNPGPEDDNVYIFSAYLAGALEPLAPGITNWYLNNIAQEEKFDWKKAFQLLMAGLEDR 124 Query: 116 LAEWHSPLYLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVR 173 + P LV+DD+H + T P I F+ + L +V+LSR L I LR + Sbjct: 125 EEQELRPGILVVDDWHFVQTEPEIRLFFDRFLACRRPTLHVVILSREKINLPEIDRLRAK 184 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 ++LE Q LAF++QE QF + L E +I GW A++LI S Sbjct: 185 GKVLEFSEQDLAFSYQEIHQFINNFLPVTFTQQEVEQIYKHTEGWIIAIRLILNSLANKP 244 Query: 234 HSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 + N L +YL +VL + FLLKS+IL S + + + G+E Sbjct: 245 --KQNILSQAEYENMEILFEYLAHDVLVRQPEPLQMFLLKSSILESFHAQMCQEILGDEF 302 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 L + ++GLFL +D + YH LF FLR+ + +L IH A + ++ Sbjct: 303 SYDLLALVRKRGLFLSEIDKG--IYRYHNLFREFLRREASKRVP-DLQTIHVKAGDYYLR 359 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 G +A++H + IL + +L +L L+ LP +P +++ Sbjct: 360 HGEEEQALYHLILGKQWDKAVAILRKISRNLVYSGRGRVLCGYLQQLPAME-HIHPDIIM 418 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 + Y + L +A + + T + + ++ P +A+ + Sbjct: 419 ALGDEARFACNYKKAIGLYEQAAANYSEANDFTGVSNAYRGIGETYLDIIQPLQAQLYLR 478 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 A + L + ++ E + +G R+ + + + Sbjct: 479 RAYKALTAEQGKEKAAILGLMAENMINRGNPRRAERYRRLAREFNFEDKN--------NL 530 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEAS 592 ++ IL G + A + E+ QL E+ +P + L +A+ + D+A A+ Sbjct: 531 EARILLRTGRIYDAIKVVER--QLSREKS-YHIPCSFRESSLILSLCYAYSGQPDKALAT 587 Query: 593 ARSGIEVLSSY-QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 A+ GI V P L L + D + L + L G S Sbjct: 588 AKEGIRVGEKLRSPFITAVGYIRLAHALLIQLPRDKEQCWLA-YQKGLDIGSKLDILRSR 646 Query: 652 ANKVRVIYWQ--MTGDKAAAANWLRHTAKP--EFANNHFLQGQWRNIARAQILLGEFEPA 707 ++ + D +AA + K + + F + + + + +F A Sbjct: 647 TEVLQGQCLLHALENDWSAAKSCGHSGVKITEQVQDRWFTAVLYHTLGMSAAICQQFTEA 706 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 + L+ N L + + + Q L L N G+ HF Sbjct: 707 KAYLQAANRLFHRCGDNFGKAAGAWWLAYIALHRQQPEEFQVAFHSLLSLCNTFGY--HF 764 Query: 768 VIEGEAM 774 ++E + Sbjct: 765 LLERPTL 771 >UniRef50_UPI0001C310C8 ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C310C8 Length = 907 Score = 363 bits (933), Expect = 1e-98, Method: Composition-based stats. Identities = 210/901 (23%), Positives = 345/901 (38%), Gaps = 60/901 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK---NDI 59 I +KL+ P V RERL L+ + + L+++PAG GKT L++ W A + Sbjct: 14 IATKLAPPCPPVAPVRRERLFRALAHGSANGVTLVSAPAGAGKTALVASWLASGAVAWPV 73 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W +LD D+++ RF + ++AA+ +A + + R + +F +L LA Sbjct: 74 AWLALDGHDDERRRFWTGVLAALARADPSDAGLAQLAVPPRG--RIDRVFTELVERLAAR 131 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 PL LV+DD H +T+ IH+ + +RH P L LV+++R P LG+ LRV +L EI Sbjct: 132 TRPLVLVLDDVHELTDGAIHDDLAALLRHAPAALRLVLIARADPPLGLERLRVSGRLSEI 191 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + LAF + +P++A ++ + GWA L L AL+ R + + Sbjct: 192 RAADLAFDAA-EARELLAAWGAPLDAVDARELWRRSGGWAAGLVLPALALRDHADPSAFV 250 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A G + ++D+++ E+L R FLL++A+ + L + G + LE Sbjct: 251 AGF--GGDDRAVADFVLTEMLAGHPGDVRRFLLRTAVAEELTVELAVELGGRPDAAELLE 308 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + ++R+D + + Y PLF LR EL E+H A G P Sbjct: 309 RLVHGNALVERLDGGRDGYRYGPLFAGLLRSELARTAPEELAELHLLLARWHERDGVPGA 368 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ HALAA + + + + L EL LL E + +P P++ L A Sbjct: 369 AVRHALAASAWELAAEAVADGWLRLLLDGELELLREVAERMPPALHRRWPEVALACAAAA 428 Query: 420 QSQHRYGEVNTLL--------------ARAEHEIKDIREDTMHAEFNALRAQVAINDGNP 465 + TLL A A + + A L +V + Sbjct: 429 TAAGDAAGAATLLARAEDAAEDASGEAAGALPPARALGFARGQAVVELLLGRVCGDVERT 488 Query: 466 DEAERLAKLALEELPPGWFYS------RIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 519 A + +P G + R+ A + LG GEL + + AR Sbjct: 489 TRAAAVLTAGRRAVPSGDGDAALADELRVAALAHLGATEAWCGELEAAAQRLDAALAGAR 548 Query: 520 QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 579 + ++ L + + +G L A + A +L + P + A Sbjct: 549 ERELDAIVLLARAHLALGEALRGRLVRAADGAAAALELAERHGWDATPAAATAQAVLASA 608 Query: 580 LWAWARLDEAEASARSGIEVL-SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 638 L W R +EA+ + SS +P + + I A G D A ++L E Sbjct: 609 LLHWDRTEEADRVLARAERTVRSSGEPPLRALVALVRIGLLAADGAWDAAIARLRAAEAE 668 Query: 639 LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 698 L + H+ + + G++A A L H + R + Sbjct: 669 LRSWPLHAPLRARFAAHEALLRAARGERAEAGALLESARAAGPRPEHA-----AALGRLR 723 Query: 699 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 758 + GE A +E E + +L + A L AL LA Sbjct: 724 LAAGEPASASAAVEPWLEQTVPRAVAVELWTT---EAVARDALDDDAGACCALERALALA 780 Query: 759 NRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFV 818 GF + G ++ L + I+ T L Sbjct: 781 EPDGFRHELLALGPSLRDLLARTIRAGTAHRSFAGELLDAL------------------- 821 Query: 819 ERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKL 878 H L PL+ RE VL + + SN +IA EL V+ T+KTH++++Y+KL Sbjct: 822 ----EHDGARPLALPEPLSGREEAVLRCLPTMMSNREIATELYVSVNTVKTHLKHIYRKL 877 Query: 879 G 879 Sbjct: 878 D 878 >UniRef50_UPI0001C4276F hypothetical protein BpOF4_03975 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4276F Length = 1082 Score = 363 bits (933), Expect = 1e-98, Method: Composition-based stats. Identities = 144/816 (17%), Positives = 296/816 (36%), Gaps = 26/816 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI-G 60 ++ +K P++ + R +L+ +L L LI + GYGK++ +S + + + Sbjct: 9 VLRTKFIPPLQRSSMIYRPKLMKQLKQIEECPLTLIHTGPGYGKSSALSSFLDTSDKLSC 68 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQ----YASLTSLFAQLFIEL 116 WYSL + D F +++ AV++ + + L + + EL Sbjct: 69 WYSLSKQDENFFHFIVHVVHAVREKFPHFGSELIEYLISGEVEGWEEELDYICIEFCNEL 128 Query: 117 AEWHSPLYLVIDDYHLITNPV-IHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRD 174 + P V+DD H+ + + ++ I P N+ +V+ R P I + Sbjct: 129 LQLKKPFVCVLDDIHITERSELVKDWLQLLIESAPANVHIVLAGRVRPTWDVITRRLLNG 188 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 QLLE+ F+++E + E I GWA ALQ++ ++ H Sbjct: 189 QLLELTETDFIFSNEEIDVLLSDVFNIDCTPEELIEIEKATEGWAIALQMLGQQWKE--H 246 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 ++ + L +L E + FLL++++ N+ L V + Sbjct: 247 GEVQAVLQDGLETTDELFRFLTMEAFSRQPEEIKKFLLETSLFEEFNEKLCQTVFEAVHA 306 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 + + +Q LF+ + + + YH LF +FL ++ + + A + A Sbjct: 307 GNYITHLIQQNLFVVEIGKSQ--YRYHALFRDFLLRQLSK-NPILQDNLLQRVACYYKAA 363 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G +++ + AGD +L++ L ++ ++ L +L ++P E L L Sbjct: 364 GDYEKSLEVYMRAGDYREASALLVHEGIRLLHNGKMEGLMVTLDSIPEIMKDEYWLLWYL 423 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + + + ++ + T + E ++ ++ + RAQ+ ++ P +A+ + Sbjct: 424 EGEMNRYYSKFEQAMTCYRKLEELAEEKQDAEGLSLSMEGRAQIYLDTIQPVKAQPYLQK 483 Query: 475 ALEELPPGWFYS--RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 A+ + ++ S++ E L GE+ + + + + H ++ Sbjct: 484 AINYMERTNTSVERKVRLYSLMSENLLNLGEVKEVESWLVKIQ-------AVHPEYKNIE 536 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 +S L G TA E ++A + L L+ L + +A Sbjct: 537 LESRYLLRTGQFHTAKELLQEAKLYEKDHKLSSSHREGDLLLSLLNSLMGLTEHAKKQAE 596 Query: 593 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARG-DLDNARSQLNRLENLLGNGKYHSDWISN 651 A V + + M L D A L+ + K Sbjct: 597 AAIVGGVQRRSPFVEAVGWARMGHAVQLLDDYDPSLAIQCYETSLKLMSDLKMSRGKSEA 656 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR-NIARAQILLGEFEPAEIV 710 + ++Y + A +PE + +L G + +A G+ AE Sbjct: 657 YMGLCLLYGKQGEYDKALRIGKVALEEPERVKDRWLSGLVQLALALVTFKQGDLIEAEKR 716 Query: 711 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN---RTGFISHF 767 L + RS L L+ LY + S ++ + L L F S+ Sbjct: 717 LNGCEKTFRSCGESFGETVTLYWLSSLYLRQENSSAFKKTITRCLTLIQKHNSQFFFSNK 776 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREIN 803 + G Q + L+ ++E + + +L E+ Sbjct: 777 TLFGPTDIQCIPPLLLEAKTHQVEAYLVEPLLAELG 812 >UniRef50_A8LZ74 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=4 Tax=Micromonosporaceae RepID=A8LZ74_SALAI Length = 953 Score = 361 bits (926), Expect = 8e-98, Method: Composition-based stats. Identities = 199/954 (20%), Positives = 318/954 (33%), Gaps = 124/954 (12%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG------ 55 L+ S+L+ V+R RLL +L + L+ +PAG+GKTTL++ W G Sbjct: 31 LLASRLTPGPLPGPVVLRPRLLRRLDEGTAVPVTLVAAPAGWGKTTLLTSWYQGAAGEPG 90 Query: 56 --------------------------------------KNDIGWYSLDEGDNQQERFASY 77 + D+GW S++ GD ER SY Sbjct: 91 GDPVRGGPVTGGAGGNRSPTPVTPAGESGPPEYGPGQSRPDLGWVSVEAGD-DGERLWSY 149 Query: 78 LIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPV 137 L AA++ A + L +A P+ LV+DD H IT+P Sbjct: 150 LTAALRAAVGSPVPDRPPRPDQ---------LEVLAATIAARERPVLLVVDDLHRITDPE 200 Query: 138 IHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDC 197 + + F +RH + L LV +R+ L + R+ +L E+G LAFT E Sbjct: 201 VVTGLEFLLRHSEQRLRLVAGARSGVPLAVHRWRLAGELTEVGPDDLAFTGDEIADLLTA 260 Query: 198 RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVD 257 + + A R+ + GW AL+ + A + N ++ YL + Sbjct: 261 H-GTALPADGVRRLRERTGGWPAALRFAVRALPGQPDPARWVGQ--LDGNQPDVAGYLRE 317 Query: 258 EVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEW 317 EVL +D R L +A+ ++ L +TG + RL ++ G L+ D W Sbjct: 318 EVLGGLDPNDRELLRTTAVTDAVCAGLADALTGRPDTGTRLADLAGVGGVLRHDDGRPPW 377 Query: 318 FCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDIL 377 + PL + LR A ++ E+HR AA + G P++ + HAL GD ++ Sbjct: 378 YRCRPLLTDLLRGELDRLPAEDVRELHRRAAGWYADNGRPADGLRHALVGGDWAGATELF 437 Query: 378 LNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLA---- 433 L L + +++ +P+L L A L Sbjct: 438 LATWPELAPYGGAGPAPPPTPPP-AETVARDPELALACAAERAYAGDVSAAEGYLRSAAV 496 Query: 434 RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERL------------------AKLA 475 A ++ R + A+ V + A++ Sbjct: 497 AAADQLPVPRRERFARLAAAVELAVVRWSDDVPAVRAAAARLLATHAAAASMSGGRAEVR 556 Query: 476 LEELPPGWFYSR---------IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 526 L +PP VA + LG G+L + ++ MAR Sbjct: 557 LPAVPPAVEPRGAAMEDADGWAVAGTALGLADVAVGDLGSAERQLEMAFLMARAAGWART 616 Query: 527 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 586 L + + + +G L+ A A L Q + + A R Sbjct: 617 ELAGASRVALLRAVRGDLRGAEALARSALALPPSQGWSCQIDCGYAYLALGVV--ALHRD 674 Query: 587 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL-ENLLGNGKYH 645 EA+A + ++ + Q GDL L E L G+ Sbjct: 675 QPEEAAANLALAEHATAESAAGAVVALCRAQLLRDAGDLAGGHRLLVAARERLGGHEGEL 734 Query: 646 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 705 W+ A GD A L ARA++ G+ Sbjct: 735 DRWLRAAE---ADLRGARGDLDTARELLAGDGP----------ELAVGRARAELRAGDDR 781 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 AE VL + + +L L + G A R L AL LA GF Sbjct: 782 TAEAVLPNWQVAGAADWPLPVRVEAAVLDMVLARRVGDNRRAHRTLELALDLAGPQGFRR 841 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 F + L + T ++R ++ Sbjct: 842 QFTRADPDVRDLLAAHLDTGTA---HWPTLSDLVRGADEPVEAAGPAPAALAEPL----- 893 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 T+RE +L + S SN +IA EL ++ T+KTH+RN+Y+KL Sbjct: 894 -----------TERELTILRYLQSILSNVEIAAELSLSINTVKTHVRNIYRKLD 936 >UniRef50_D1CIB7 Transcriptional activator domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIB7_THET1 Length = 1108 Score = 360 bits (924), Expect = 1e-97, Method: Composition-based stats. Identities = 159/816 (19%), Positives = 294/816 (36%), Gaps = 35/816 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGW 61 +I SKLS P + + R L+A + +L+L+T+P GYGKTT +S +A W Sbjct: 6 IIRSKLSAPAQKSGIIHRRALVAWFARMQRHKLSLLTAPPGYGKTTTLSLFAQRHPRTVW 65 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLF--IELAEW 119 Y+L D F +L+AA+ G C + + + L L I + Sbjct: 66 YTLSSADEDPSVFLQHLVAAM-----GTCCVLGEGEDPSAWLQGSDLDRALLGIIHAMQG 120 Query: 120 HSPLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRDQLL 177 + LV+DD+ + + + + I + P+ + + SR L I LR +LL Sbjct: 121 SAGFALVLDDFDCVRDQREVLRLLDSLITYSPQQVVFTLASRTRVHLPCIPKLRASGRLL 180 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + S+ F+ ++ Q + + + + GW ++++A + Sbjct: 181 RLDSEIFRFSREDVAQLLRAE-GVHLGTDDLETVYELTEGWPLGVRIVAQYLASG--ATL 237 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 R S L +YL EV+ F+L+S+ L ++ AL+ +V G + Q Sbjct: 238 SDLRAKLAYRGSELYEYLAQEVISKQPSEVVSFMLESSPLPTLEPALLDKVLGRNDSQQM 297 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 LE++E +GLF+ R+ + YHPL ++L ++ A + E+ R AA + +G P Sbjct: 298 LEDLEERGLFVSRLGEDK--LRYHPLVRDYLLRQA-RAAGARVAEVARRAARYYDTKGEP 354 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 A+ L D + +L A S L +++++P L + P+L +A Sbjct: 355 EHALELWLLGEDYDEIYSMLARWAPRWLREGHYSRLLRAIESIPAPRLEDYPELTYYKAR 414 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 +Q+ + L A ++ + + RA + G A L Sbjct: 415 ALQAMGKLHTAFELYGEAARRFEEEGDGNWVSRALLGRASIYREKGQISRAGDTYFRVLS 474 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE- 536 L P +R +LG G L + ++ ++ + ++ Sbjct: 475 LLEPEDISTRAEVVMMLGISDAASGLLGSAERRLRDALELYELGEDADGQFHVWNNLAQV 534 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 + +G A E KA Q+ E + A +L+ A A + Sbjct: 535 VYLRRGDFPRALEAASKARQIATELDADVYIASANA--TLATVLYMQGDYARARQLADAN 592 Query: 597 IEVLSSYQPQQQLQCLAMLIQCSLAR----GDLDNARSQLNRLENLLGNGKYHSDWISNA 652 + S Q + A++++ R D A+ + + N + + + A Sbjct: 593 YNLASRLGNQAE-TIDALVVRAHTLRYGSDRDKRAAKELYSDVLNRMSILETNRHLAVEA 651 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH--FLQGQWRNIARAQILLGEFEPAEIV 710 ++ GD A + + A H F Q A ++ E A + Sbjct: 652 LLGLSSLHRLLGDPKGAEGYAQQAATTAERIGHEWFRQVCLLETASILAMMNRREEAIAM 711 Query: 711 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 770 E RS +LLLL L + + LK+ G+ + E Sbjct: 712 ASACLEWFRSCGDRYHQAHSLLLLAYL----------EGEVEPMLKVVEEGGYWALLSRE 761 Query: 771 GEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHH 806 L + E + + ++ Sbjct: 762 RYFALPLLVSALGNAGTAEAAKRALLTMGSDVLGDA 797 >UniRef50_A5VE23 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VE23_SPHWW Length = 855 Score = 360 bits (923), Expect = 2e-97, Method: Composition-based stats. Identities = 176/892 (19%), Positives = 329/892 (36%), Gaps = 56/892 (6%) Query: 16 TVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIGWYSLDEGDNQQ 71 R+ L L+ A + +L+++ PAGYGKTT+++QW + W + D Sbjct: 3 LCRRDLPLRSLNVARSGKLSILYGPAGYGKTTILAQWRQDLIDQGLPVAWITAAREDGDP 62 Query: 72 ERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYH 131 + F L+ A++ A E S + L P +++D + Sbjct: 63 QAFLKVLMLALRDAGVDLG---EAGLWASGDISAARRLEGAILALERSGKPAVIIVDAFE 119 Query: 132 LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEA 191 + P + I P+++ LV+ SR P+L ++ R + IG +L F E Sbjct: 120 TVNEPSMDAMFADLIEMLPDHVHLVLASRQRPRLTLSTHLARGNVRLIGPDELRFNENEM 179 Query: 192 KQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHL 251 Q + + A++ + + + GW A+QL L A S+RR + L Sbjct: 180 AQML----GATVTASDLAALSERTGGWPIAVQLHQLWLASAPEGAELSSRR----PMAEL 231 Query: 252 SDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQ--GLFLQ 309 + Y+ DEVL + A R L +I + L V E+ + LEEI GL + Sbjct: 232 TQYMADEVLRTLTDAHRDLLTDLSIFPEIETNLADHVRQSEDSALLLEEISDLLPGLIER 291 Query: 310 RMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGD 369 + HPL + ++ + E HR AA EA++ A+ D Sbjct: 292 HGAGIETSYRLHPLIADHAGRQLKTGRGREALLRHR-AALWLWNDRRHGEALNQAILGHD 350 Query: 370 ALMLRDILLNH-AWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEV 428 +LR +F L L+ LP SL ++P++ L +A ++ + + Sbjct: 351 NGLLRLFTETLPTLEIFLAHGTDELRAVLRVLPPGSLRQSPRIRLAEALILSKAGLFKDA 410 Query: 429 NTLLARAEHEIKDIREDTMH-AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSR 487 + E +D + E +R+ +A + +A + + P Sbjct: 411 WKIAEAVAAESAGGDDDPLQETERLTIRSIIASHFMTACSVADMALDRISRIAPTTPLYC 470 Query: 488 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQT 546 + G+L + + + D +I A+G L Sbjct: 471 AFLDTGRLLTYQQSGDLEAARMALARARAAYDSSGDFPFSHSHLRAHALQIALAEGRLGD 530 Query: 547 AWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 606 A E + ++ E + + A + R A+ + + ++ + Sbjct: 531 ASEL---SHAMLAEHQDSPMAHIWLAMARTALSAVEYCRTYRLRAADQVKMAMVLLGEGD 587 Query: 607 QQLQCLAMLIQCSL-ARGDLDNARSQLNRLE----NLLGNGKYHSDWISNANKVRVIYWQ 661 A+++ L A D A L + G + A + Sbjct: 588 ATFDQYAIVLPIILDAAMRRDGADMALQEIAVATKRFAERGLISMTIMMEALVLLYQLRS 647 Query: 662 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRN-IARAQILLGEFEPAEIVLEELNENARS 720 + + L +P A+ + R+ +A I + E A V + + + ++ Sbjct: 648 GSAPRTIDPRQLDLALRPPSASPWRERDSVRHAVALHAISVASPETALSVAQAMLRDGQA 707 Query: 721 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ 780 + + L+L + + + G + A R + +AL+LA ++ F EG A+ L + Sbjct: 708 GGRVGTRIKALVLTSLAHEREGDRPAADRSMTEALRLAVDESVVAPFAEEGPALHPILER 767 Query: 781 LIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQRE 840 + + +L +H ++IL+ I+ S LT RE Sbjct: 768 IAREEPTSKLARH-LEKILQLISA-------------------------SSHPSQLTDRE 801 Query: 841 WQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 ++L + G SN+ IA L + T+K H++N++ KLGVA R++A A + Sbjct: 802 AEILAHLADGVSNKLIARRLALTENTVKFHLKNIFAKLGVASRKEAAACAFR 853 >UniRef50_B5HRX4 Transcriptional regulator n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HRX4_9ACTO Length = 856 Score = 354 bits (909), Expect = 8e-96, Method: Composition-based stats. Identities = 159/684 (23%), Positives = 265/684 (38%), Gaps = 30/684 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG---KND 58 L+ K P +V RERL +L A + RL ++ +PAG+GKT+L+S WAA K Sbjct: 122 LLAVKQVIPPARAGSVPRERLQRQLRLA-DTRLTVVVAPAGWGKTSLLSGWAADPEEKRR 180 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 I W SLD+GD++ RF SY++ A+ A + A + + L ELA Sbjct: 181 IAWVSLDDGDDEPVRFWSYVLTALHNAGDAISAGPLQALDATGVSPVDLALPMLLNELAA 240 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 P LV+DDYHL+ + IHE++ + + + P +L +V+ SR P L IA LR R L E Sbjct: 241 TTVPHVLVLDDYHLLADQRIHEAVEYLVTYLPASLRIVIASRTDPPLPIARLRARGDLTE 300 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + + QL F+ +EA ++ ++ + + GWA + Q A + Sbjct: 301 LRAAQLRFSPEEAAALVAAVSGHDLDGVVATAVWERTEGWA--------AGLQLAALALR 352 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + + HL DY EVL + R L+++A L ++ L L Sbjct: 353 ADPTKGHADDRHLLDYFTAEVLPGLAPRHRDLLVRAAPLERLSGPLCDAALQVTGSAEVL 412 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 ++ R LF+ +DD W+ H L L + A+ E+ AA + + Sbjct: 413 SDLVRADLFVAALDDEQHWYRCHHLLREVLGREAT----ADPREVLGHAAAWFADENRID 468 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFN-HSELSLLEESLKALPWDSLLENPQLVLLQAW 417 +A+HH L AG +++L A S F + + L ++ P+L A+ Sbjct: 469 DAVHHLLRAGRDDEAAELMLRTAESWFFPRGTAATYLRFGERLSSRTVG--PELAYSLAF 526 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIR----EDTMHAEFNALRAQVAINDGNPDEAERLAK 473 VN L E + +RA ++D ++ LA+ Sbjct: 527 AAALCGDQDRVNRWLDVCEAGSTPDTVLPGWHSFRGAVLTVRAGFGMSDAEAAQSVALAR 586 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 ALE G + + LG VL G + L+ Q R+ + + ++ Sbjct: 587 QALELETAGGATAHPHVPATLGGVLARDGRFDEAATLLFDVWQQRRRGSWPLWTVMAVAG 646 Query: 534 -QSEILFAQGFLQTAWETQEKAFQLIN----EQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 + L G + +A + + P L + + A ++ Sbjct: 647 MLAVSLVEAGRGEDCDRVLREAGPTADAVEGDGREASTPGLAALRIAAGRRSYLNADVEA 706 Query: 589 AEASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 647 A R + + + P L L LA GD AR+ L R ++ + Sbjct: 707 AAVRLRRAVTLAELHPRPTTLFLGLLYLADAELACGDRPAARAALARAREVVEEEPVSAF 766 Query: 648 WISNANKVRVIYWQMTGDKAAAAN 671 + G + A + Sbjct: 767 AKRRLEESEARLG-RVGARTAVRS 789 Score = 90.5 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 74/506 (14%), Positives = 153/506 (30%), Gaps = 28/506 (5%) Query: 402 WDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEF--NALRAQVA 459 LL+ +L + + L + + T AE + +RA + Sbjct: 362 DRHLLDYFTAEVLPGLAPRHRDLLVRAAPLERLSGPLCDAALQVTGSAEVLSDLVRADLF 421 Query: 460 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-KGELTRSLALMQQTEQMA 518 + + ++ L E+ + + + ++ + + + Sbjct: 422 VAALDDEQHWYRCHHLLREVLGREATADPREVLGHAAAWFADENRIDDAVHHLLRAGRDD 481 Query: 519 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 578 ++ S F +G TA +L + +L + + A Sbjct: 482 EAAELMLRTAESWF------FPRG---TAATYLRFGERLSSRTVGPEL---AYSLAFAAA 529 Query: 579 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 638 L R++ +G + + + ++ D + A+S + L Sbjct: 530 LCGDQDRVNRWLDVCEAGSTPDTVLPGWHSFRGAVLTVRAGFGMSDAEAAQSVALARQAL 589 Query: 639 ----LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 694 G H + V + + + + + + + Sbjct: 590 ELETAGGATAHPHVPATLGGVLARDGRFDEAATLLFDVWQQRRRGSWPLWTVMAVAGM-L 648 Query: 695 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS-------DA 747 A + + G E + VL E A ++ L L AGR+S A Sbjct: 649 AVSLVEAGRGEDCDRVLREAGPTADAVEGDGREASTPGL-AALRIAAGRRSYLNADVEAA 707 Query: 748 QRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHR 807 L A+ LA + + +A + + E Sbjct: 708 AVRLRRAVTLAELHPRPTTLFLGLLYLADAELACGDRPAARAALARAREVVEEEPVSAFA 767 Query: 808 HKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTI 867 + E + R+ V + LT RE +L + + +I + ++ T+ Sbjct: 768 KRRLEESEARLGRVGARTAVRSGVLAEELTDRELSILRALQGSATQREIGAAMFLSINTV 827 Query: 868 KTHIRNLYQKLGVAHRQDAVQHAQQL 893 K + ++LY+KLGVA RQDAV A++L Sbjct: 828 KAYNKSLYRKLGVASRQDAVAAAREL 853 >UniRef50_A5VDQ9 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VDQ9_SPHWW Length = 888 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 178/898 (19%), Positives = 326/898 (36%), Gaps = 59/898 (6%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKNDIGW 61 +L+ P R LL L A RL L+ PAG+GKTT ++QW A W Sbjct: 15 RLAPPALQPGLCERTLLLRSLDVACAGRLTLVIGPAGFGKTTALAQWHASLVRRGQTACW 74 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 ++ E + RF L A++ A A+ + + S+ L + L Sbjct: 75 CTMSEEERDPSRFLWMLALALEAAG---IALDGDVLRTVSDGSVGLACDALLMALERAAP 131 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 +VI+++ I +P I + + PE++ LV+ +R P+L I+ LRV+ ++ I Sbjct: 132 KGAIVIEEFERIDHPPIAALVAELVDGLPEDMHLVLSARRKPKLPISVLRVQGRVRVIDP 191 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 +L F +E D +A I GW A+QL L + A Sbjct: 192 AELRFGRRELTALLDDGA----DAEALETIEQQTEGWPVAVQLYRLWRERAGADAVVPK- 246 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 + AS ++DYL +++ D + + + L+ +I L + ++ L ++ Sbjct: 247 --SSGLASEVADYLAEQIFDGLAVDAQDMLIDLSIAEYCEIPLADFIRQSQDSAALLRQV 304 Query: 302 ERQGLFLQRMDDTGE--WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 Q L + D + + HPL R R + IH A++ + + Sbjct: 305 ADQLPGLVQRSDAEDDLVYRLHPLLLGHARARLALK-PGRADLIHGRASDWYWRNARFAA 363 Query: 360 AIHHALAAGDALMLRDILLNHAW-SLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 AIHHA+ + D +L + + + + L L +P PQ+ L+ L Sbjct: 364 AIHHAVLSHDEALLARRIEELPFLDILGTAGAGELLHILNQVPAAC-QGLPQVRLITILL 422 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDT------MHAEFNALRAQVAINDGNPDEAERLA 472 + + E + A E + D + + AL+ A++ Sbjct: 423 LFRNGLFPEAEQMRAEEERLLADRADAADPQVRRLRLGNLALKLLFAVHIDGFVADHDRL 482 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + L + + +L +G+L + + + +++ A Sbjct: 483 VAEIRALSLDAPATWAWVECLSATILQIRGDLDAAAEALLRAGKLSAAIGKPTPAASMAT 542 Query: 533 QQSEIL-FAQGFLQTAWET----QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 Q+ IL A G L ET ++ A EQ + + +H A + + Sbjct: 543 CQTLILGLAHGRLGHVLETVTAIRQPAAGQGTEQAVGEQALHAMAGIAAAVVDYERGYRV 602 Query: 588 EAEASARSGIE--VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 645 +A + R + S Q L +++ + R D AR +E L K Sbjct: 603 QAAEALRMALAEFGESEAWFDQYALALPIIVDVTYRRHGFDAAR---QEIERLRERAKRL 659 Query: 646 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 705 + +Q A A + + R + G F+ Sbjct: 660 GLRGVLGLLSTIELFQAVRAGEPAVADAAEPADDATLSWRERDTMRLALGRLAMERGAFD 719 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A + + + R +LL + G A L +A++L+ G+++ Sbjct: 720 RAAGLAARAIAAGEAGDRLGTRIRGSILLGLARDRGGDADGADDALREAVRLSYPEGYVA 779 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 F EG ++ L++ I ++ +EQ ++ R I + Sbjct: 780 PFAQEGRSIVPLLQRAIGKGSV--IEQRLLAQVARAIERER------------------- 818 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 E L+ RE +++ + G SN+ IA L ++ TIK H++ +Y KLGV+ R Sbjct: 819 ---EFAAPDALSNREAEIVAHLADGASNKVIARRLGLSDNTIKFHLKKVYAKLGVSSR 873 >UniRef50_A5GAS8 Transcriptional activator domain n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GAS8_GEOUR Length = 1082 Score = 353 bits (907), Expect = 1e-95, Method: Composition-based stats. Identities = 150/819 (18%), Positives = 295/819 (36%), Gaps = 31/819 (3%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGW 61 I +K+SRP L V R RL A L +A +++PAG GK+TL++ + + W Sbjct: 7 ISAKISRPT-LCKVVQRTRLFALLDEKLAKPVAWVSAPAGSGKSTLVASYLDARELPCIW 65 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLT-----------SLFA 110 Y DEGD F Y+ A ++A + + + T + Sbjct: 66 YKCDEGDADLATFFYYMGLAAKKAAPRYKKPLPLLTPEYLAGIPTFTRRYFEILYSRVMP 125 Query: 111 QLFIELAEWHSPLYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIAN 169 L+ +V+D+Y + HE PE + ++V+SR+ P + Sbjct: 126 HCSPSLSRMGMGAVIVLDNYQDVPAESPFHEMAATGFDSIPEGVHVMVISRSGPPSACSR 185 Query: 170 LRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSA 229 LR D++ + + FT E+ + R+ ++ ++ + + GWA + L+ Sbjct: 186 LRANDKIGLLRYSDIRFTLAESMELVQRRIP-ALDNEHANMLHEKSQGWAAGIILML--- 241 Query: 230 RQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT 289 + A + + DY E+ D ++ R FLLK+A L ++ L R+T Sbjct: 242 -ERAGLGGTGIEGAADLACDRIFDYFAGEIFDRMEQVVRDFLLKTAFLSVLSVPLADRLT 300 Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAA 348 G + L + R+ F +R+ + + + YHPLF FL R + E+ + R AA Sbjct: 301 GSGSAGRILSTLNRRHYFTERLSGSEQAYQYHPLFREFLLNRAETACAPDEVAAVQRKAA 360 Query: 349 ESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLEN 408 G EA AGD L ++ HA L +EE L A+P + Sbjct: 361 LLLEQDGRMEEAARLYGDAGDRDGLGRMVTGHARELLGQGRSKTVEEWLAAIPGGPADDE 420 Query: 409 PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA 468 P L+ L +A + + + T A + + Sbjct: 421 PWLLYWSGMCAIPV-DMPRGRASLEKAFASFRAMGDTTGIYLSWAGIVDTYAFGLDEWQP 479 Query: 469 ERLAKLALEEL-------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 521 EEL P + ++ L + +Q+ + +++ Sbjct: 480 LDGCITLFEELRSIWPDFPSQETDLIASSRMLIALTLRKTDQPQWVQEWLQRVSALLQEN 539 Query: 522 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 581 + + ++ S +G E+A I ++ + L ++ W Sbjct: 540 PSFDIQMDTMFCMSVYYLWKGEYDKNALLLERAGAEIRQRKPSPFAVI-RLKLMKGIHYW 598 Query: 582 AWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL-NRLENLL 639 A+ D A ++ G+E+ S +A G+ + A L ++ LL Sbjct: 599 ITAQYDAALSTLAEGLEISTESGVLVFDSLLWGFRAAAEMASGNRELASDLLKQQMSTLL 658 Query: 640 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 699 G K + + N +A + ++ +A+ + Sbjct: 659 GMEKTLDSYFYHVNAAWFAILTGVPSRAVEHLDIVAAKAERMGTPYYRALWHIGVAQTEF 718 Query: 700 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 759 +LG + A+ ++ +++++ LL+ + G++++ L +L L Sbjct: 719 MLGHLKEAKKHIQNALRMSQTMKSQVLEWYALLISAWFQLRHGKQTEGLLSLHRSLSLGR 778 Query: 760 RTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRI 798 R G++ + + M ++ P+ + +++ Sbjct: 779 RHGYVHLEFYQPDVMRFLFAVALEEGIEPDYVKGVIRKL 817 >UniRef50_Q0B065 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B065_SYNWW Length = 954 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 143/874 (16%), Positives = 306/874 (35%), Gaps = 55/874 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGW 61 + ++L+ P +VR+ L+ + + +L I + AG+GKTTL+SQ+A + W Sbjct: 4 IPSARLTIPRAAVGEIVRKNLIDTVLNSPT-KLVYIHAGAGHGKTTLLSQFANSTEKVVW 62 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHC-AICETMAQKRQYASLTSLFAQLFIELAEWH 120 SLD N F + L AV+Q + E + + ++ L L + Sbjct: 63 LSLDGE-NDIFTFINTLCEAVKQTFPEFDFSASEYLPFSEKNNFISMLAGALICSIENIS 121 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 ++DD H I + + + + I++ P N L SR P + +V+ ++ E+ Sbjct: 122 GDFVAIMDDLHTIEEDEVKKLITYLIKYLPNNAKLCFGSREAPWQDFLSFKVKGKITELT 181 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++LAFT +E + I GW A++ + S Sbjct: 182 QKELAFTREEIVGILGF---------DDPAIYGSTEGWPLAIRSFQVLLENGI-----SI 227 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + L YL E + N++ FL KSA ++ ++ V ++N ++ LE Sbjct: 228 GDITSYGNETLYAYLFRECIANLNSDMVDFLKKSACFDVLDAQMLDDVLNKKNTRLMLES 287 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 + + +F + D ++ YH LF + L + ++P + + AA + S A Sbjct: 288 LVSRNIFTIKTGDG--FYRYHALFRSGL---LETGDKDQMPLLRQKAARYYFDHKQYSRA 342 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 +A+ + D +L +I+L + L +AL ++ NP++++ + + Sbjct: 343 ARYAIDSKDDELLENIILACYRDYIKAGNYNELRIWFRALNDAAVELNPRILVAKGAFLS 402 Query: 421 SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP 480 + + L A + + ++ E +A+V N + +E+ RL + +L Sbjct: 403 VLGNFVQAKACLEAAIPLMN-RDDKELYFEAMIHKARVLRNFVSFEESNRLLDELIAKLD 461 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 L ++ + AL + + W I F Sbjct: 462 DPTGELAYSVVIEKLYNLCWNSQIGEAYALARHMIESCAHVGNIKIMRWFERYLCTIQFF 521 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA-QLLWAWARLDEAEASARSGIEV 599 G ++ + EK+ +L ++ + +A Q+L +R A + + Sbjct: 522 AGRMKESVYYYEKSLELPEDELNYLGMHSTGIYVAKAYQMLGERSRSLSALSEELQRLRN 581 Query: 600 LSSYQPQQQLQCLAMLIQCSLA----------RGDLDNARSQLNRLENLLGNGKYHSDWI 649 +Y+ + + + A + + + + Sbjct: 582 TGNYEEMWA--GYLLAAEIHFQNTFIDKMNGENASYETAVKYFTLADEYAPLYRKTNFQM 639 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI 709 A R+ Y + D + A + + + ++ A Sbjct: 640 HWAKMQRLTYSLIFTDDPKEDIVREIFENLDRAGAYLKSLVLARLMGYFSAISDYPSAVK 699 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 E S ++ + +L + + A + LKL + GF +F Sbjct: 700 CANLCIETGESSGMLLHASLAYGVLVRAAIETKDHEKATSLTGRYLKLCSDHGFYEYF-- 757 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPE 829 + + +++ +E ++++ + ++E L + Sbjct: 758 ---RLRKAYDPVLEFAYNYGIEPEFTKQMIE-------FAGYRPKKVYIETLGAFTVYQD 807 Query: 830 LIRTSPL---TQREWQVLGLIY----SGYSNEQI 856 R L +++E ++L + G + EQI Sbjct: 808 RSRQKLLKFRSKKERELLAFLLDAGDQGATKEQI 841 >UniRef50_B0FB23 Transcriptional regulator n=1 Tax=uncultured bacterium pFosPlaG RepID=B0FB23_9BACT Length = 1095 Score = 351 bits (900), Expect = 8e-95, Method: Composition-based stats. Identities = 157/795 (19%), Positives = 311/795 (39%), Gaps = 26/795 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-AAGKNDIG 60 ++ SKL T++R+RL+ LS RL ++ + AGYGKTTL+ Q + K Sbjct: 7 VLKSKLRF-SGASETIIRDRLMPILSNIQTKRLTMVIAGAGYGKTTLVKQAVLSFKLPAV 65 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNG-HCAICETMAQKRQYASLTSLFAQLFIELAEW 119 WY LD+ D+ E F SYL A +++ +I E + + + F + Sbjct: 66 WYRLDKYDSDFETFFSYLKAGMEEHLGDIEISIEENLQDVNKVEKILHFFLKEIEN--RI 123 Query: 120 HSPLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 +V+DDY+L+ + ++ +++F I + + LV++SR P + I++LRVR +L+ Sbjct: 124 QHEFVIVLDDYYLVHDNDEVNRAVKFLIENMHHKIHLVLISRAEPPIKISSLRVRRDVLD 183 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + LAFT E K+ + +++ + + GW AL L S + + Sbjct: 184 LTESDLAFTISEIKKLYSDVFQLSLQSRTFADLQKKTGGWVAALILFFHSLKGKSQETAD 243 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + + ++ YL + + + T+ FL+K+++L + A ++ N + L Sbjct: 244 NDLLKIKGSNRIIATYLEENAYEMLPPETKDFLVKTSLLSKVKVAFCNQLLRINNSKEIL 303 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWEL-AAELPEIHRAAAESWMAQGFP 357 ++E++ LF ++DD + F YH +F +FLR + E+ ++ + A+ G Sbjct: 304 SDLEKRHLFTFQLDDEKDCFTYHHIFQDFLRTKLDNNYCKEEIQDLQKKTAQLLEQDGNE 363 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 EA+ + L + I+ + L++ ++ LK +P + P + L+A Sbjct: 364 EEALEYYLESEQMEDSFRIIGKISTFLWSKGRRQRIKSYLKHIPSRYFQKEPWINFLKAQ 423 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 + + E L ++ + + A DG+ +AER K A++ Sbjct: 424 WLDLTGKTQEAVQCLEQSAQAFLNDKVPYGAALCLMRLGYQNHMDGDFPKAERTYKQAVD 483 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA----RQHDVWHYALWSLIQ 533 + + + + L +G+ ++ + ++ Q Sbjct: 484 -IFVDNIELTTILYLFIIDTLAQQGKFEQADLCYNKAMTISVNPQDSQWRLLLEGGIYTQ 542 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 G Q + + +K+ QL L + + + E +A Sbjct: 543 IGNRHLLSGNFQRSNDFLKKSKQLFENSDFYALFTKNYYITALTN--YYMGDFSEGLENA 600 Query: 594 RSGIEVLSSYQPQQQLQCLAML----IQCSLARGDLDNARSQLNRLENLLGNGKYHSDW- 648 + G+ ++ + A L + L A + E+L SDW Sbjct: 601 QKGLNLMRDKGFEDFFPS-AWLNFSAARNCLELNKTIEATEHIK--ESLRNFENIGSDWG 657 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL--GEFEP 706 + + +GD A A L N+ +A + + +F+ Sbjct: 658 RAMCYLTFYQIHKHSGDDAKALKNLSQCEAVIGQYKIPWAEFELNVFKAGLYIEKSDFQK 717 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 A +LE N+ + R ++ NR + + YW K A + LL +K+ + Sbjct: 718 ARQILETSNKELKLFRYLN--NRINFVWARYYWAQNDKEMAFQKLLKGIKICQENQYYFL 775 Query: 767 FVIEGEAMAQQLRQL 781 + E + L +L Sbjct: 776 LSVGEEGVVPILVEL 790 >UniRef50_A1RBQ1 Putative transcriptional regulator, LuxR family n=1 Tax=Arthrobacter aurescens TC1 RepID=A1RBQ1_ARTAT Length = 878 Score = 350 bits (899), Expect = 1e-94, Method: Composition-based stats. Identities = 174/899 (19%), Positives = 314/899 (34%), Gaps = 57/899 (6%) Query: 8 SRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-IGWYSLDE 66 + P + R RL+AKL + LI +PAGYGKT L+SQW + + W S ++ Sbjct: 18 AVPRLPLVLLARSRLVAKLDDTADT--VLICAPAGYGKTLLLSQWLEDQAHKVAWLSPNQ 75 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 + + ++ A++++ + + A + L ELA + + LV Sbjct: 76 HNRE--ALWPAMLQALRRSPAIPPGALRQFSGDEEDAV--EVLGDLAQELASTGTSVRLV 131 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 ID ++ + + + L +++R+ + R+ +++E+ S LAF Sbjct: 132 IDGVDGFSSDERERWIPALLNQSGPPIQLALVARDSTAVDAGPARLSGRIVELRSSDLAF 191 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 + +E + + + +GW + L R+ + A Sbjct: 192 SLEEINVLAAKTTTLT-GMHQRRELFRQTAGWPACVVLALRYLREAADTEAPLGDIAA-- 248 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 N LSDYL ++ + RH L +++ R + A + G N L + Sbjct: 249 NNRQLSDYLDHHIIRTLSGEERHVLSSTSVCRVVVAAQANTLAGHRNAGSILSSLADDRD 308 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALA 366 ++ + F HPL F R + EL R AA+ G P + HA+ Sbjct: 309 LVESAGSGRKVFLVHPLIRAFFRAELARKQPDELLRFSRIAAQWHEQAGEPEATLRHAMD 368 Query: 367 AGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYG 426 + D ++ ++L H SL E+ + ++ ALP + NP L ++ A + Sbjct: 369 SADNGLIGEVLERHGASLLGSGEVMQVRRAIAALPDAAFATNPTLCVVAALAHVESRQPT 428 Query: 427 EVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG-----NPDEAERLAKLALEELPP 481 +A A D + +A+++ + +P A L Sbjct: 429 TATRYMAAANRTRADDLPPDLRELQALAKARLSWFNDGWEDQDPQATADYAALRFSRQSD 488 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 +R+V+ + +G+ + A + + A ++ + Q Sbjct: 489 VRIEARMVSVT----AALVEGKYGTAENEASAALMEATEAGNAYLAGKVYLKLAATYSMQ 544 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 G L+ A A + + A A EA A +G+ L Sbjct: 545 GQLRRASHFLRLAEDKLPAHVWTAGAGRSVGALMHASAALLRAEPAEALRFAAAGVAELG 604 Query: 602 SYQPQQQLQCLAMLIQCSLA-------RGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 + AM + GD NA + + +G + ++ Sbjct: 605 QLGAASKGVGAAMRATLEIITACAHMDSGDRRNALEGMRQARLRIGRDHLFAQPLAACIA 664 Query: 655 VRVIYWQM-TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 V + G A L + + + A + F+ A L+ Sbjct: 665 VIEHTAALVLGHADHAREVLEWAEERIPGTGELCLLRAQGPA----GISRFDAAADRLKP 720 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 + A L +L + + GR+S A ++L +AL+ A+ + I Sbjct: 721 FHTGAVKPVLEWTRLHVNVLECSMAIRTGRRSLAGKILEEALRQADDLDVLRPLAIAPHE 780 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 + L + R E +RLL + R Sbjct: 781 VIDLLVE--------------------------RAGSYGPQETLAQRLLVLRPPTDARRA 814 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 LT RE +VL L+ S S EQ+A EL ++ T+KTH+R +Y KLG R DAV A + Sbjct: 815 QALTPREREVLTLLPSHLSQEQMAAELHLSVNTVKTHVRIIYSKLGAGSRHDAVAAAYK 873 >UniRef50_A5V3K4 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V3K4_SPHWW Length = 861 Score = 345 bits (886), Expect = 4e-93, Method: Composition-based stats. Identities = 173/886 (19%), Positives = 308/886 (34%), Gaps = 53/886 (5%) Query: 20 ERLLAKLSGANNFRLALITSPAGYGKTTLI----SQWAAGKNDIGWYSLDEGDNQQERFA 75 R+ + L+ +PAG+GK+ + + AG LD+ D RF Sbjct: 11 RRIDDLAPRIARHHVTLLRAPAGHGKSVALDRLRAAIEAGGERCAALLLDKRDADLSRFF 70 Query: 76 SYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITN 135 + A+ + A+ A P L +D + Sbjct: 71 RRVAQAL---------------GVDPAQPDAAGVAEAVEVGAADDRPALLFLDGIDEAGD 115 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF 195 V+ ++ I P L V+ SR G+A LR +D++ IG QL FT EA F Sbjct: 116 -VLPPALSDLILFAP-GLRFVIASRESNLPGLAKLRAQDRVAVIGPDQLGFTRAEALAFL 173 Query: 196 DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYL 255 E A+ R+ D GW L+ + A + ++A ++D+L Sbjct: 174 GAS-----EDADVLRLVDRCEGWPILLKFVRDGLDAGDPPT--LAGDMGSVSAGLIADFL 226 Query: 256 VDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTG 315 +++L + FL ++A++ L + E + +E + R LQ G Sbjct: 227 DEQILAPLLPEDADFLERTAVVSRFTLDLARLLAPEAAVEQSVERLGRAAGLLQARRLNG 286 Query: 316 EWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRD 375 W+ +P+ L +R Q + +++ +HR + EA+ HA A D Sbjct: 287 LWYHVNPMLRATLMRRFQARIGSDVRRVHRMIEAWMIEHDAVDEAVLHACLAQDYDECVQ 346 Query: 376 ILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR 434 ++ + L L L L ALP L P L + +A ++ + R + L+ R Sbjct: 347 LVRRFGPANLSMRYGLRTLRSVLAALPRHYLDHEPALGISEALVLSKEGRVSDARRLIHR 406 Query: 435 AEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA---LEELPPGWFYSRIVAT 491 + L + + LA LP + Sbjct: 407 LRDKAGGHAAAAGALGDLDLLDIMLACHADQPLMPGLADRLSAVAAALPHDDVIHQGWVQ 466 Query: 492 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 551 +++ V G T + A E + D + + + + QG Sbjct: 467 NLICRVHLSLGNFTHAAAAGIAAEHYYARSDSRYGQFFVHLHLASTRSWQGLYDQVGSHI 526 Query: 552 EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 611 + A + + E M +RA+LL+ + D ++ + L Sbjct: 527 DSAESIAVQHFPEDPAMATLCRLLRAELLFDQGQAD-LGIDLLPALQSAENNDGWLDLFV 585 Query: 612 LAML-IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 670 RG A + R + +R + G + A Sbjct: 586 SGYRTAALHAFRGGGLEAALAVTRRGDEAALRIGLPRLALVMQILRAELLSLAGHRNQAG 645 Query: 671 NWLRHTAKPE--FANNHFLQGQWRNIARAQILLG--EFEPAEIVLEELNENARSLRLMSD 726 LR P + + + IA A++L+ +F A ++L+ L + Sbjct: 646 AALRAIRVPSNGEDDARWRERLALGIANARLLIHSRQFRRATVLLDTLEGECERRGIGRL 705 Query: 727 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNT 786 + + LL L +G A L++ L+ A + + F+ EGE MA+ + + Sbjct: 706 VAKVGLLRALLLACSGSPQRAIATLVELLQSAQQPS-MQAFIEEGELMARLCSLVAHHSQ 764 Query: 787 LPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGL 846 L A R L E+++ + H + S L+ RE ++L Sbjct: 765 RHALGP-EASRFLAELSERLGQSYEHV-------------IDRDAGGSYLSAREREILLS 810 Query: 847 IYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 + G SN+ A L V+ T+K H++ +Y+KLG +R A+ AQQ Sbjct: 811 LAQGESNKSTAERLNVSEATVKFHLQRIYRKLGAHNRVKAIAVAQQ 856 >UniRef50_A5GBS1 Tetratricopeptide TPR_4 n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GBS1_GEOUR Length = 1000 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 154/810 (19%), Positives = 300/810 (37%), Gaps = 30/810 (3%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYS 63 +K+S P TV RERL L + I +PAG GKTTL+S W + WY Sbjct: 10 AKISAPKV-SGTVERERLFRLLDHGREKPVVWIAAPAGSGKTTLVSGWLDNRRIPSIWYQ 68 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIE--LAEWHS 121 +D GD F Y A Q A + +Y +F++ F E + Sbjct: 69 IDSGDADPATFFMYFGLAAQNAAPKKKKKLPVLTP--EYLMGIPVFSRRFFEDVFSRLPI 126 Query: 122 PLYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 P +V D+Y + +HE +R I P +T VVLSR ++ +R+ D+L +G Sbjct: 127 PAVIVFDNYQDAPADSPLHEILRCGIDAAPAGITFVVLSRCDSPPQLSRIRITDRLHFLG 186 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 L F+ +E+K + ++ R+ +GWA L L+ S Sbjct: 187 WFDLRFSVEESKTMAISHGCADLDDDVLLRLHAKANGWAAGLALLLRSRELGP------V 240 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 R + + L DY +E+ D ATR FLLK+++ S ++ ++G + L+ Sbjct: 241 RGPSLKTPAVLFDYFAEEIFRLTDGATRDFLLKTSLFPSTTVSMAEHISGNNDASAILDR 300 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQGFPSE 359 + R+ F++ + YHPLF FL R + A + L ++ R AA G + Sbjct: 301 LNREHYFIESHVSDDPVYQYHPLFREFLLNRAKSLFAPDALADMQRDAARLLEQAGQIED 360 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A AGD+ L ++ HA L + E + +LP ++ ++P L+ + Sbjct: 361 AARLYSDAGDSAGLARLVTRHARELLLQGRNKSIREWMASLPEKTMNDDPWLLYWSG-MC 419 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQV-AINDGNPDEAERLAKLALEE 478 L +A + + + + + V + G+ ++ ++ Sbjct: 420 SFPMDLPGTRQYLEQALALFR--MNEDLPGIYLSWAGIVDSYAFGDEWKSLDNCITVFDD 477 Query: 479 L-------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 L P + +L L + R + + + +++ + + Sbjct: 478 LTSSYPSFPSLEIELVASSRMLLSLTLRKTNQPERVERWLARVSALLQENPSFDIQMDIF 537 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 S +G E+A + H + +++ + + + +A Sbjct: 538 SCMSLYYLWKGEYDKNALLLERA--VAEVSHRKASSFAVIRIKLMSGIHYWITADYQAAL 595 Query: 592 SARSGIEVLSSYQPQQQLQCLAM--LIQCSLARGDLDNARSQL-NRLENLLGNGKYHSDW 648 A S +S+ L +A G+++NA + + ++L++LLG + + Sbjct: 596 QALSEGLDVSAKSGVHLYDSLLWSFKAATEMAAGEMENAENSMKHQLKSLLGMENALNSF 655 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 N +AA ++ +A+ L G A Sbjct: 656 WYYINSAWHALLTGNPSRAAEHMETAFARTESMGTPYYQALWHVAMAQVAFLQGRAGEAR 715 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 ++ + + +++ + +L++ L Q G +++ L L L + G++ Sbjct: 716 TLVRTAHRISLTMKSLVMEWYSLMIDAWLLLQEGEETEGLLSLRRGLSLGRKHGYVHLEF 775 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRI 798 + M + + E + +++ Sbjct: 776 YQPTVMRFLFAKALGERIEQEYVKGLIRKL 805 >UniRef50_UPI0001694022 transcriptional regulator, LuxR family protein n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694022 Length = 590 Score = 344 bits (883), Expect = 7e-93, Method: Composition-based stats. Identities = 133/598 (22%), Positives = 254/598 (42%), Gaps = 25/598 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGW 61 L+ +KL PV V R L KL ++ ++ ++ AG GKTTL++ + + D+GW Sbjct: 6 LLSAKLKAPVLRKQFVPRTELYRKLDMLSDRKVTVVQGLAGSGKTTLMTSYMRERPDLGW 65 Query: 62 --YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQK-RQYASLTSLFAQLFIELAE 118 +LDE +N F Y I +++ + TM + Q +L L L +L E Sbjct: 66 RWLTLDETNNDVRSFWYYTIEVLKELLDQEPDHLLTMFEAISQKPNLDHLLVLLVNKLEE 125 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 + LV+D++H++ + + +S+ FF+ PE++ LV+L+R P+L + + + LE Sbjct: 126 CGAAGTLVLDNFHVLNDTALLQSLSFFLNFSPESIRLVLLTRETPKLYLGDFAMSGLYLE 185 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I ++LAFT +EA F L +E + + ++ GW LQL AL+ TH+ + Sbjct: 186 ISERELAFTQEEADLFLTQTLGLKLEPSAADKLYHWTEGWVGGLQLSALALGHRTHTLTE 245 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 +L ++ +YL +E+L +V + F+L++++L N+ + R+ G N + Sbjct: 246 PVGKL----NKYMINYLSNEILLSVSETEQQFMLQTSVLTYFNETICNRMLGINNAATVI 301 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 ++ + LF+ +D+ + YH +FG FLR + + + +H AAE++ Sbjct: 302 AKLLEKHLFVFTVDEEKGLYRYHQVFGEFLRGKLRERGTDVIRLLHYKAAEAYEEMDSWE 361 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 E++ H L A + +L + L +P D L + L+ + + Sbjct: 362 ESLQHYLQAENYQEAVRLLSASGHRF---QNWTYLL----QIPLDVLSCSRPLMFQRLFY 414 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 ++ +++ I + ED + + F + G+ L + Sbjct: 415 HFCNLEIDDMRQIVSL----IPNQEEDGLWSLFQFCCFLL----GDKTFDLPAGMEWLND 466 Query: 479 LPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 +R + G +L K E ++ Q + + L + + Sbjct: 467 WETIEIDDVTRAIILVTGGTMLALKDEFGMAMNWFDQAMLLEELSPNPYLRFSVLSSRVQ 526 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 +L G L T E+ F L + + PM + +L+ AE + Sbjct: 527 VLETLGELTTCLSLYEEMFCLCDNYPMLD-PMRAVTWIGLTGIRLKMMQLELAEETMA 583 >UniRef50_P17051 Regulatory protein alkS n=3 Tax=Pseudomonas RepID=ALKS_PSEOL Length = 882 Score = 344 bits (883), Expect = 8e-93, Method: Composition-based stats. Identities = 164/904 (18%), Positives = 320/904 (35%), Gaps = 60/904 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS-QWAAGK---N 57 L+ +K+ + R RL ++ R+ L +P GYGKT ++ +W + Sbjct: 22 LVSAKVH------SCIYRPRL--SIADGAAPRVCLYRAPPGYGKTVALAFEWLRHRTAGR 73 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 W SL + + +I ++ T + A L L + L+ + Sbjct: 74 PAVWLSLRASSYSEFDICAEIIEQLE--TFEMVKFSRVREGVSKPALLRDLASSLWQSTS 131 Query: 118 EWHSPLYLVIDDY-HLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + +D+ H + P++H M F + + P+N+ V + G + L++ + Sbjct: 132 NNEIETLVCLDNINHDLDLPLLHALMEFML-NTPKNIRFAVAGNTIK--GFSQLKLAGAM 188 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 E + LAF+ +EA + + + + +V GW L+ ++ + Sbjct: 189 REYTEKDLAFSAEEAVALAEAESVLGVPEEQIETLVQEVEGWPA---LVVFLLKRELPAK 245 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 H SA + +Y DE+ + + R FL S++L + V NG Sbjct: 246 HISAVV-------EVDNYFRDEIFEAIPERYRVFLANSSLLDFVTPDQYNYVFKCVNGVS 298 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 ++ + + L+ + F HP+ NFLR+ E A+ + + AA +G Sbjct: 299 CIKYLSTNYMLLRHVSGEPAQFTLHPVLRNFLREITWTENPAKRSYLLKRAAFWHWRRGE 358 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSL-FNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 AI +L A D + L F E+ L + L LP + + P +++ Sbjct: 359 YQYAIRISLRANDCRWAVSMSERIILDLSFRQGEIDALRQWLLELPKQAWHQKPIVLISY 418 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 AW++ + L+ + + + A +E L Sbjct: 419 AWVLYFSQQGARAEKLIKDLSSQSDKKNKWQEKEWLQLVLAIGKATKDEMLSSEELCNKW 478 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCK---GELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + + A + L + + EL + LA Q + A+Q+ + + + Sbjct: 479 ISLFGDSNAVGKGAALTCLAFIFASEYRFAELEKVLAQAQAVNKFAKQNFAFGWLYVARF 538 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 QQ+ A G + A + +A Q +E + + +L + LD +E Sbjct: 539 QQA---LASGKMGWARQIITQARTDSRAQMMESEFTSKMFDALELELHYELRCLDTSEEK 595 Query: 593 ARSGIEVLSSYQPQQQLQCLAMLIQC-SLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 +E +S++ + + L R DL+ + L + + Sbjct: 596 LSKILEFISNHGVTDVFFSVCRAVSAWRLGRSDLNGSIEILEWAKAHAVEKNLPR--LEV 653 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE---PAE 708 +++ + + N F+ H + R + ++L A Sbjct: 654 MSQIEIYQRLVCQGITGINNLKTLEDHKIFSGQHSAPLKARLLLVQSLVLSRDRNFHSAA 713 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 + AR + R LL L AG AQ ++ A+++A + + Sbjct: 714 HRALLAIQQARKINAGQLEVRGLLCLAGAQAGAGDLKKAQLNIVYAVEIAKQLQCFQTVL 773 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 E + + + + T L+Q L I + + Sbjct: 774 DEVCLIERIIPASCEAFTAVNLDQAIGAFSLPRIVEIGKS-------------------A 814 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 E + LT+++ VL L+ G SN+QIA + V IK H+R ++ L V +R A Sbjct: 815 ENKADALLTRKQIAVLRLVKEGCSNKQIATNMHVTEDAIKWHMRKIFATLNVVNRTQATI 874 Query: 889 HAQQ 892 A++ Sbjct: 875 EAER 878 >UniRef50_A3IBY3 Transcriptional regulator n=2 Tax=Bacillaceae RepID=A3IBY3_9BACI Length = 1062 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 170/831 (20%), Positives = 308/831 (37%), Gaps = 37/831 (4%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDI 59 ++I SK P +H + R L+ L ++ LI S AGYGKTT ++Q+ Sbjct: 4 IIIQSKCIAPNPSNHCINRASLMRTLKKSHQHTCTLIHSGAGYGKTTTLTQFLYHESRRF 63 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSL--FAQLFIE-L 116 WYS+ + D+ F ++L +VQ+ +T Q ++ + L + +LF+ L Sbjct: 64 SWYSISDEDDTILPFLTHLFFSVQRIVPNFGQTFDTWDQLSRFPKMEELNRWYKLFVNCL 123 Query: 117 AEWHSPLYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLGIAN-LRVRD 174 P+ +VIDDYHL+ + I+ M I P + ++ SR LP I L+++ Sbjct: 124 CNMDEPILIVIDDYHLVDHVFHINYLMEKIIEFAPPTVHFIIASRTLPNWDITRKLKLQK 183 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +LL I ++LAF+++E FF+ ++ + ++E ++I + GWA ++ L+A Sbjct: 184 RLLVITEKELAFSNEEIAVFFEEYVNVHLSSSEVAKILEMTEGWAISISLLAEQWH---- 239 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 H I + L YL +EV + + +LK AI + + L+ G E Sbjct: 240 --HAPLDHWLTIPTNDLFRYLSEEVYSTMTSTEQEVILKLAIFPNFSAKLLEDFYGSELA 297 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 Q L ++ +F+Q G + +H LF FL + Q + + ++H+ AA ++ Q Sbjct: 298 Q-MLNPFTQRHVFIQPATTDG-IYRFHALFSRFLEIKWQ-QYPHQYNDLHQQAALFYVDQ 354 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 A++HA + ++L HA L + L E + + +L Sbjct: 355 HNVQAALYHAFKTNNPNFCGELLQLHAEPLIRAGQFEWLLEKINRFTVQEKTKFYKLYYF 414 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + + + Y + + + R+D + A A + ++ P AE + Sbjct: 415 EGECHRYRAFYEKAKQSYEKCATIAQRQRDDVYVTKAQAGLAHIYLDTIQPALAEPHLEK 474 Query: 475 ALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 ALE P + E L G+ + + + Sbjct: 475 ALELAKYTPLPKTELVELQRQYAENLVNLGKAKGAQLFIDNVALPED-------VVQRAN 527 Query: 533 QQSEILFAQGFLQTAWETQEKAFQL---INEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 +L G LQ A E K +L + H E + F+ + + AW A Sbjct: 528 VDVRVLLRTGQLQEAKELLGKRLELPPQLVATHRESELLAAFVYTLLGEGKDAW----YA 583 Query: 590 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 S + + D A + L+ S Sbjct: 584 AQHGIQRGLREKSVFIEAVGYIRKAHALLLMEYSDYQGACHAYEKALTLMNTINI-SRVK 642 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI 709 + I M GD AA +L + +A +I + + E A+ Sbjct: 643 AEPYMGLAIVKHMLGDMEAAKKYLALGLQETEQVQDAWMTALILLAEVKINVSQHETAQA 702 Query: 710 --VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF---I 764 +L + + + + L L + + +Q Q +L G+ + Sbjct: 703 KELLIKAQQLFQECGDRNGLMHVLFYQSVIAFQEKSIEQFQSSFQQFAQLCMTNGYHYFL 762 Query: 765 SHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE 815 +I G + +L+Q + E+H A LR+ Q DE Sbjct: 763 QKKMILGPSNQMIFYELLQYSQQCGSEEHAAIVGLRQFLQAEDSMSYSHDE 813 >UniRef50_Q1Q7C6 Similar to ATP dependent transcriptional activator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q7C6_9BACT Length = 1113 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 144/813 (17%), Positives = 281/813 (34%), Gaps = 35/813 (4%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYS 63 +K++RP RERL + + + I++PAG GKTTL + + + WY Sbjct: 37 AKITRPKIA-GIFPRERLFRLMDKGRDKPVIWISAPAGSGKTTLAASYLNSRKLSYLWYR 95 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIE--LAEWHS 121 +DEGD F + AV++A H + +Y LF + + E + S Sbjct: 96 VDEGDADIATFFYSMGIAVKKAVPSHRKPLPLLTP--EYQQSIPLFTKRYFEELYSRLTS 153 Query: 122 PLYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 P +V D+ N + H+++ + P+ ++++ +SRN P A++ ++ IG Sbjct: 154 PWIIVFDNIQDAPVNSLFHKTLTSSLDIIPDGISIIAVSRNDPPPHYASISANNKSHLIG 213 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 +++ FT +E+K+ I +R+ GWA L LIA R Sbjct: 214 REEVRFTMKESKEILLVGAKKRIANTSLTRLYTQTEGWAAGLVLIAEHIRTKGLDDTLR- 272 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 +G DY +E+ D T+ FLLK+A L M + ++TG L E Sbjct: 273 ---SGSIYEKAFDYFANEIFIKTDKKTQIFLLKTAFLPRMTIHMAEKLTGVSESGRILHE 329 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESWMAQGFPSE 359 + R+ F + YHPLF FL R + L + R AA G + Sbjct: 330 LTRKNYFTTAHYQKETIYQYHPLFREFLLSRARDSFDTGRLSAMQRKAAALLGKSGQIED 389 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A + GD L + +HA SL L E + +P ++ P ++ + Sbjct: 390 AALLFINVGDWDGLIKLTCSHASSLIAQGRTKTLVEWITNIPEETRDNEPWILYWHG-VC 448 Query: 420 QSQHRYGEVNTLLARAEHEIKD--IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 + + E RA + + + + A+ + + + A L + Sbjct: 449 KLSYNLTESRGCFDRAFMQFRAWNEQTGMWLSWSYAVDTIFHEFE-DFPRLDNYASL-FD 506 Query: 478 EL-------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 ++ P R++ + + + ++ + L Sbjct: 507 DIFQKRTPFPSFEVELRVLPCRFFI-MAMREPNHPEIDKWAHRVFLCLQECREVNLRLQL 565 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW--ARLDE 588 + G + + LPM L + ++AW ++ Sbjct: 566 GFHLAVHYLWMGDFANVGIVINSISEGLR--SETILPMERLLWEN-TKAMYAWLTGSVES 622 Query: 589 AEASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 647 + +++ L+ +L+ GD++ A + ++ + L + + Sbjct: 623 CLRTVSEALKLSCETGIHFWDHHLLSFAACAALSDGDIETANGMIRKIASGLTHARKIDI 682 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPA 707 + AA + + + + A GE+ A Sbjct: 683 IFYHFLCAWRDLTSGNLSSAAEHMRIHTSLVAKIGAYLPVAVNHVAAAHIFAARGEYREA 742 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA-GR---KSDAQRVLLDALKLANRTGF 763 L + R + + LL L + G+ + + L A+ F Sbjct: 743 ISWLNRAQQIGRQTKSKLIKHMCLLTKAWLALECSGKGTSEEEGLAALRKAMSFGREHRF 802 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQ 796 I+ F+ E +++ + ++ E + + Sbjct: 803 INCFLWRPEVVSRLCIKALEAGIEAEYVRELVR 835 Score = 42.7 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 71/238 (29%), Gaps = 5/238 (2%) Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 + AWL ++ A + + A A++DG+ + A + + Sbjct: 612 MYAWL---TGSVESCLRTVSEALKLSCETGIHFWDHHLLSFAACAALSDGDIETANGMIR 668 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 L I + G L+ + M+ + + + + + Sbjct: 669 KIASGLTHARKIDIIFYHFLCAWRDLTSGNLSSAAEHMRIHTSLVAKIGAYLPVAVNHVA 728 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 + I A+G + A +A Q I Q +L H L+ L + E Sbjct: 729 AAHIFAARGEYREAISWLNRAQQ-IGRQTKSKLIKHMCLLTKAWLALECSGKGTSEEEGL 787 Query: 594 RSGIEVLSSYQPQQQLQCLAMLIQ-CSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 + + +S + + + C + S A + + L+ K D Sbjct: 788 AALRKAMSFGREHRFINCFLWRPEVVSRLCIKALEAGIEAEYVRELVRTRKLVPDTPP 845 >UniRef50_C8W196 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W196_DESAS Length = 824 Score = 343 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 169/895 (18%), Positives = 310/895 (34%), Gaps = 92/895 (10%) Query: 14 DHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYSLDEGDNQQE 72 T+ RER+ L + L ++ +P GYGKTT + ++ A ++ + W S + E Sbjct: 4 SKTLKRERVNRALMNIFEYPLTIVEAPMGYGKTTAVREFLAARDVRVLWTSFYSDSDTGE 63 Query: 73 RFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHL 132 F ++ A + + S + L +L ++ LVIDD H Sbjct: 64 AFWDRVVMAAGSFDEMAGKRLKGFGVPSDALHVRSFLS-LMNDL-DYPPDTTLVIDDIHY 121 Query: 133 ITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAK 192 + + E +FI P++ +V+++R++ L +A L + + Q L FT +E + Sbjct: 122 ARDILRPELFGWFITELPDDFHIVLITRDISFLDLAELFAKGLCNIVSQQTLRFTGEELR 181 Query: 193 QFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLS 252 + + ++ GW + LI L Q I S + Sbjct: 182 AYC-ILMDFRQGEDALEKVSKYTGGWISLAYLILLGLEQGIP-----------IGQSSVI 229 Query: 253 DYLVDEVL-DNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRM 311 + LV+++L + D + FLL+ +++ + + VT E+ L+++ ++ F+ Sbjct: 230 NELVEKILYNAYDETIQTFLLRLSVMDTFTEEQARYVTEEKRAGEILKKLRQENAFVFY- 288 Query: 312 DDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDAL 371 D+ + H + +FLR R AE+ ++R E ++ + A + AG+ Sbjct: 289 DEAIGVYRIHHVLSDFLRAR--QTDHAEVSLLYRQVGEWFLEKKAFKPAYAYLCRAGETE 346 Query: 372 MLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ-AWLMQSQHRYGEVNT 430 + +L + SE E A P L + P L A L+ Sbjct: 347 RVLSLLDEEDAITKDSSEFEGAPEMYAAAPRKLLFQYPFAYLQYIASLLLFSGDPAAARD 406 Query: 431 LLARAE---------HEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 ++R + +I R + AE + +R ND + AL L Sbjct: 407 AVSRLDELEEHYRRIADIHPNRRSRVLAEISVVRIFAVFNDAR--QMVDCTNKALRLLEG 464 Query: 482 G-WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 G R A G +L + E MA + Sbjct: 465 GVSCLVRRDAEFTFGSPHFLYTYYREPGSLKETAEFMAAEF------------------- 505 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 600 F I+ A+ AE +A I Sbjct: 506 ------------PVFPRISSGCGTGCD-----YVTLAEHALETGDWQAAELNAFKAIYKA 548 Query: 601 SSYQPQQQLQCLAM-LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 659 + + + C + L++ + + + A L +L + + + + + Sbjct: 549 QTMEQTGIILCAGLTLVRFYIYQEKIIEALEHLRQLRADVSKEDNAV-YNTTLDLIEGYA 607 Query: 660 WQMTGDKAAAANWLRHTAKPEFANNH-FLQGQWRNIARAQILLGEFEPAEIVLEELNENA 718 + + WLR + + + +A +L ++ EI+ E + Sbjct: 608 YGCMTRPDSIPEWLRTGELSMANFMYRGMAFNFIVYGKAVLLAKDYIRLEILTETFPQYF 667 Query: 719 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL 778 N +L ++ L +A+ + I F M L Sbjct: 668 GIFHNQLGFLHNHILAAAAKYRLYGMEKGCAALAEAIGMGRADHLILPFAEYAPEMIDML 727 Query: 779 RQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQ 838 R + Q N+ + E+++E L PE T LT+ Sbjct: 728 RHIAQNNSGDGYIIELLEAC----------------EHYIESLSRAPE-----STVTLTE 766 Query: 839 REWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 RE +VL L G +IA L V+ TT+KTH+ N+Y+KL V R AV+ A +L Sbjct: 767 RELEVLTLAAEGLRRNEIAARLYVSGTTVKTHLANIYRKLEVGGRTAAVKKAGKL 821 >UniRef50_A2SDT6 ATP-dependent transcriptional regulator-like protein protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SDT6_METPP Length = 919 Score = 342 bits (877), Expect = 4e-92, Method: Composition-based stats. Identities = 204/903 (22%), Positives = 304/903 (33%), Gaps = 50/903 (5%) Query: 4 PSKLSRPVRLDHTVVRERLLA-KLSGANNFRLALITSPAGYGKTTLISQWAAGKN----- 57 SK P V R LLA L A + RL L+ +PAG+GKTTL+ Q AA Sbjct: 46 SSKHRIPRARRDVVPRPALLAPVLEQAADARLVLVQAPAGFGKTTLLVQLAAALATAASG 105 Query: 58 -DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W SLD DN R + L A+ T+ + Q AS + A + Sbjct: 106 AQVVWVSLDAEDNDANRLFAALFGALAPLDLPWAVPPATVLAQLQDASPAARTALGLLTD 165 Query: 117 AEWHSP---LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 A P + LV+DD H +T+ + + I P L L++ SR P L +A R Sbjct: 166 ALGVRPESRIALVLDDLHHVTDAAALQLLDTLIARAPPELCLLIGSRTAPPLSLARWRAG 225 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 +L+E+G + L F A+ R A GW L L+ SAR T Sbjct: 226 GELVELGLEDLRFDLGAAQALCRLRGLQAPSDAALQAALARTHGWVAGLHLLLGSARAGT 285 Query: 234 HSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 S A A HL DY EVL + + F+L ++L ++ AL VTG ++ Sbjct: 286 GSLPALAGPAAH---RHLFDYFAQEVLAGLPPPLQQFVLYGSVLPELSPALCQAVTGRDD 342 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 + L+++ + LFL +DDT +H LF +FLR + +H AA A Sbjct: 343 ARAVLDDLFGRQLFLSALDDTVPVLRFHDLFRDFLRGELERREPGHAAALHALAA---AA 399 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 + A+ H LAAG L A L LE L LP L Sbjct: 400 ETRAERAVPHWLAAGRWAEALAALRQMADGLLAVGGTHRLERWLDQLPLAWREAQADAAL 459 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER-LA 472 L+ S+ +G R+ + G D AE LA Sbjct: 460 LRGLCAWSRWDWGLARDEFQRSHDAYAQQGRPRDRYVALGMLGACHNALGELDRAEAVLA 519 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 A LPP ++ S+ +G+ L + A + Y + Sbjct: 520 DAADAPLPPA---LQVAFDSLQAWHGVARGDGAAVLTGLAAMADNAARAPEARYPNIVDM 576 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEA 591 G + + P E V L W A Sbjct: 577 SYGHFTGLPG--------TRPLMERLGRLCRADQPGGEVQVPALHAWLAFWHGEPGTARE 628 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQ--CSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 + ++ L A+ + A+G A + + ++ L+ G + W Sbjct: 629 ALHELLQRQRQLPGDTMLGIGALHLHSLHLAAQGHTAEALAAIAQVPALMTPG-FSRGWR 687 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL--GEFEPA 707 V+ GD A L ++P A + + + Q L GE A Sbjct: 688 RTYAHVQARLHWRAGDADGLAALLPDLSRPRSAREWPVLDTGAPLLQGQHALLCGELAAA 747 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA-LKLANRTGFISH 766 LE RL + + L G A L D + G S Sbjct: 748 RAHLERAALLQAGARLPAFMGDARCALALCRAAQGEPEAAAAALDDLLCEAVQDDGLGSL 807 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 + + + L P Q R + L Sbjct: 808 LLEPPARLQALWQALAPRLRCPAAAQARLRGRLAAWLAEGP---------------RAAV 852 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 PL+ RE +V+ L+ G SN+ IA L ++ T+K H+ N+ KL + R A Sbjct: 853 ADAAPPDDPLSAREREVMALLAEGQSNKLIARALGLSLHTVKRHVANILTKLALDSRTQA 912 Query: 887 VQH 889 + Sbjct: 913 AAY 915 >UniRef50_A0R2Z6 Putative serine/threonine protein kinase n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R2Z6_MYCS2 Length = 722 Score = 337 bits (864), Expect = 1e-90, Method: Composition-based stats. Identities = 139/644 (21%), Positives = 247/644 (38%), Gaps = 19/644 (2%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI-GWYS 63 +K RP + R R L + G + + LITS G GK+TL +Q + W S Sbjct: 71 TKFQRPSGRAEHIRRTRCLEMIDGPHVTHV-LITSSGGNGKSTLAAQLLDRTDGAPAWLS 129 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 L+ DN+ F + + A++ A + + A + + +L L + + Sbjct: 130 LERSDNEPGGFWTAFLIALRTALPEFGGGL--LREIVGGADVDRVLVRLADTLDAEDTAV 187 Query: 124 YLVIDDYHLITNPVIHESMRFFIRHQ-PENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 +V+DD H IT+ + + + + P +V+ SR P L A L + +L + ++ Sbjct: 188 SVVLDDLHEITDVTVIRQLSWMLERIDPATCRVVMCSRTRPALPTAQLVMTGRLAHLETE 247 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 ++F E ++ RL + ++ I GWA A+ L L+ R T + + + Sbjct: 248 DISFDGAETRELLLERLGVALTPEQADEIAAGTDGWAAAIYLSGLALR--TGATTEEVLQ 305 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 + + DY DE+L + FL + L L V + + L E+ Sbjct: 306 SLSVPDRRVQDYFADEILHAITPRQLAFLEGISFLDRFTADLCDAVRDATDSEEILGEL- 364 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIH 362 R +F+ R+D G W H F LR R A LP R AA+ MA EAI Sbjct: 365 RGNMFVLRLDAIGFWQRLHHTFAAVLRARAAAAGNANLPLRQRRAADWLMAHDRIPEAIE 424 Query: 363 HALAAGDALMLRDILLNHAWSLFN-HSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 + + A D ++ N + +E L LP + + +P+L L AW + Sbjct: 425 YYVRAADYDDAVRVIAAEYPRFMNISPRGAAVERWLDMLPMELVTGSPELGL--AWAAVA 482 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 R GE L R E +K + + H++ + N G + A+ + PP Sbjct: 483 GAR-GEAGELHRRIE-AVKPLSANDSHSQAIMDFLRGCFNFGEVEAGRECARSSFVMTPP 540 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 + + G L +++ + + + A Sbjct: 541 TGIWYPMQGAVYALLATWVDGPTPEVLHVVEDLLALESTEHQPIALAGLWALRGLVQAAH 600 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 G A ++ +A + EQ ++++P A+ +D+A A A +G EV++ Sbjct: 601 GQCGAA-DSVRRAADIRREQRIDRVPQAANTWSSTARTHRLLGDVDQAAADALAGYEVVA 659 Query: 602 SYQPQQ-----QLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 640 P++ + L L+ +G AR + + L Sbjct: 660 GIPPERDAVGSVVPILVELVYARRLQGRTSEARRYADEAQRRLA 703 >UniRef50_B0TA01 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=3 Tax=Caulobacter sp. K31 RepID=B0TA01_CAUSK Length = 891 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 157/893 (17%), Positives = 305/893 (34%), Gaps = 40/893 (4%) Query: 12 RLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN----DIGWYSLDEG 67 + R RL A + R L+ +P GYGKT ++Q+ A W S+ E Sbjct: 24 LASRCLSRPRLFAV---DKSIRCHLLRAPQGYGKTVAMAQYWAEHRQAFAATAWVSVKEC 80 Query: 68 DNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVI 127 + A + A + + +L L A L+ S + + I Sbjct: 81 RRDLQLLADRICAQISATHEASGQD-RSPPPTESLRNLHDLAAWLWETRDRLGSKVLICI 139 Query: 128 DDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFT 187 DD + + F+ P + + S +G A ++ R E+ LAFT Sbjct: 140 DDLEFDLHS--IHQIEAFMLATPAEVEFIAASSAD--IGFARMKARRDTHELRHGALAFT 195 Query: 188 HQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGIN 247 EAK + AE + GW L+ +A + + A + G++ Sbjct: 196 LDEAKAVTLAGERQAVSEAEIHSLWKRTEGWPEIFCLLMQAASERRSTDRLIADHITGVD 255 Query: 248 ASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLF 307 L Y +L ++ T F + ++IL S++ V +G ++++ + + Sbjct: 256 I-DLDKYFRSTILHSLPDDTLSFCVCASILGSVSAEYFNHVFLRNDGAYFIDKLSTERML 314 Query: 308 LQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAA 367 Q D + + +HPL FL R E P + AA+ E+I+ +L A Sbjct: 315 FQPRDRSQTAYEFHPLLREFLEHRFSVEYGGLKPNLLARAAQWQRQNNNSRESINLSLRA 374 Query: 368 GDALMLRDILLNHAWSL-FNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYG 426 G+ D+ + + E+ ++ + + +P + L AW H + Sbjct: 375 GEHGSAADVASENMMDIALREGEIDQIQFWQGSFSAAVISGSPTIALGLAWAQIFSHDHR 434 Query: 427 EVNTLLARAEHEIKDIREDTMH----AEFNALRAQVAINDGNPDEAERLAKLALEELPPG 482 LL + + + + A N E+ R + ++ Sbjct: 435 RAEGLLVDLRAADLGGLDQQIRRKIECWCDLIAAIGEATRDNLSESRRQCEAWMKIYDEA 494 Query: 483 WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 542 S+ + L + + AL + + W ++G Sbjct: 495 DLVSKGAVLTCLCFIASSEHRFDDLRALFLVASSVNNIAAHRYALGWLHSAMVLAELSRG 554 Query: 543 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 602 ++ +KA N Q L + ++ + +LD+ E+ ++ + Sbjct: 555 DMRAGTALIQKARDDNNAQIKLTPFSVNLLNTLALEIQYEANQLDDIESRVDESLDFVRQ 614 Query: 603 YQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLG-NGKYHSDWISNANKVRVIYW 660 + + G+ A L L + G +G + + ++ + Sbjct: 615 HGVVDLTFSAYRTAAAIARRSGNPLRAAELLQELRVIAGESGLFRLEVLARLTLADMFIA 674 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 720 + + H+ + Q AR G+F + ++AR Sbjct: 675 ESVEQATSILPSRSHSIFFTTHGPYLRARQSLTEARIAARQGKFHLSNRFANVALDHARR 734 Query: 721 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ 780 L L S LL + G+ + +++ + DA+ +A+R G + E + Sbjct: 735 LGLGSLEVAALLCNAVAFAGTGKLALSEQRVADAIDIASRFGCYRTLLDERWHLEALGSI 794 Query: 781 LIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQRE 840 L L E+ +R ++ + L + V LT++E Sbjct: 795 STPLLNLIPSEEELGRR-------------PAPVDHLIRSLRSETSV-------VLTRKE 834 Query: 841 WQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 +L I G SN IA + ++ T+K HIRNL+ KL V +R A+ ++++ Sbjct: 835 LAMLQRIREGLSNRDIAIKHRISEDTVKWHIRNLFAKLKVKNRIQALMESERI 887 >UniRef50_A1AUN2 Transcriptional activator domain n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AUN2_PELPD Length = 1061 Score = 336 bits (862), Expect = 2e-90, Method: Composition-based stats. Identities = 164/841 (19%), Positives = 291/841 (34%), Gaps = 96/841 (11%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYSL 64 K++RP L V RERL L GA ++ + P G GK++L++ + + WY + Sbjct: 7 KINRP-LLTDIVPRERLFRLLDGALKRQVVWVHGPGGSGKSSLVASYIDSRALPCLWYQV 65 Query: 65 DEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL-AEWHSPL 123 D GD YL A++ A A + Q+ L + F L A S Sbjct: 66 DRGDQDVATLFYYLGMALENAGFSTEAPSLPLLTPGQHPELELFAKRYFERLFAALPSSC 125 Query: 124 YLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 LV DD H + + + H +R + P+ + +VV+SRN + +LR R L I Sbjct: 126 VLVFDDCHEVADDSLFHRILRNGLYEIPDGIHVVVISRNAVPSSLIHLRSRSMLNTISWS 185 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 L T E + R + ++ ++ R+ + + GW L L+ N A + Sbjct: 186 ALRLTPAETEAIIRARRADHVDREDARRLHERIQGWVAGLVLVLEGGYANISDAVPEMQP 245 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 + + DY E+ +D AT+ FLLK+A+ + R+T + + L + Sbjct: 246 VQ-----EVFDYFAAELFAGMDEATQIFLLKTAVFSEVAPFPAQRLTQQHDAGRILSWLY 300 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQR-CQWELAAELPEIHRAAAESWMAQGFPSEAI 361 + F +R + G + YHPLF FL +R CQ+ E+ I AA + EA Sbjct: 301 EKNCFTERRYEGGSMYRYHPLFREFLLERACQFFSPDEMRGIRHTAAIALEESERQEEAT 360 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ- 420 +AA +++ A + +++ L+ LP + +P L Q Sbjct: 361 ELFMAAASWQDAARLIIRIAPAYLAQGRGKTVQQWLERLPEELAQRHPYLPFWQGACRLP 420 Query: 421 ----------------SQHRYGEVNTLLARAEHEIKDIREDTMHAEFN------------ 452 Q V L+ A + D+++ E+ Sbjct: 421 EAPLSAFTDFKRAYQIFQQHDDRVGMCLSWAAGANATLYSDSIYHEWIPEMESYMRQYHV 480 Query: 453 ----ALRAQV---AINDGNPDEAERLAKLALEELPPGWFY--------SRIVATSVLGEV 497 + A+V N + + + L LEE G F+ +R+ L Sbjct: 481 FPSPEIEARVITSMFNAMSFQQPDHLRIRELEEQSYGHFWQEHCLDSDARLKTGVYLAVF 540 Query: 498 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSL-IQQSEILFAQGFLQTAWETQEKAFQ 556 GE+ R+ + + + +++ V +++ Q+ + F + +A Q Sbjct: 541 NLWCGEIQRASLIADRLDLISQAASVSDLTSFTIKTTQALVDFFTASFGACRQRVFEALQ 600 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 616 L E + L +H + A L + LD + + L Q L Sbjct: 601 LAEETGIRALYLHVMGHGLAAAL--SDGDLDTVDTLLARMRDNLDRAGELDQAYYYFCLA 658 Query: 617 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 676 + GDL+ A L + + Sbjct: 659 WRARLEGDLEGAFHNLAITSPFMES----------------------------------- 683 Query: 677 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 736 N +A G+ + A+ + + LR LLL Sbjct: 684 ----VDNLPSHAIAHIALAELYCRRGDGKAAQGHVALARQFGERLRSHVVEFMCLLLEAD 739 Query: 737 LYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQ 796 L + GR + L AL L G ++ + + + M + + ++ + Sbjct: 740 LNLEQGRAGEGIACLRAALALGRSHGIVNMYWWQPDTMVRLCMRALREGIEAGYVSALIR 799 Query: 797 R 797 R Sbjct: 800 R 800 Score = 53.9 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 55/355 (15%), Positives = 107/355 (30%), Gaps = 19/355 (5%) Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA-ERLAKLAL 476 S V+TLLAR + D + A + A A +G+ + A LA + Sbjct: 621 AALSDGDLDTVDTLLARMRDNL-DRAGELDQAYYYFCLAWRARLEGDLEGAFHNLAITSP 679 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 S +A L E+ +G+ + + Q + L+ +++ Sbjct: 680 FMESVDNLPSHAIAHIALAELYCRRGDGKAAQGHVALARQFGERLRSHVVEFMCLLLEAD 739 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 + QG A L + + + +R + ++ SA Sbjct: 740 LNLEQGRAGEGIACLRAALALGRSHGIVNMYWWQPDTMVRLCMRALREGIEAGYVSALIR 799 Query: 597 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL-GNGKYHSDWISNANKV 655 L P ++ ++ L R E GN S + Sbjct: 800 RRGLVPRTPPLDMEEWPWPVKVY-----------TLGRFELHANGNPVLFSGKVQKKPLE 848 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 715 + K + + PE + + + R + LLG + + L Sbjct: 849 MLKVLLALEGKESHEGQIADLLWPEAEGDTARKSLKSTLHRLRDLLGNEKAVLMREGRLI 908 Query: 716 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 770 + + LL ++ A +++A R+ AL L + HF+ + Sbjct: 909 LDRYQVWTDVLAFEELLAKARVKKDAADEAEAIRLTEKALAL-----YRGHFLDQ 958 >UniRef50_Q1LD93 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=cellular organisms RepID=Q1LD93_RALME Length = 855 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 177/894 (19%), Positives = 306/894 (34%), Gaps = 64/894 (7%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIGW 61 KL P +R+ LLA+L A + L ++ + GYGKTTL++QW + +GW Sbjct: 9 KLMPPRLGGGIAMRDALLARLHEARHAALVVLAASPGYGKTTLLAQWRQQLVGARARVGW 68 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 SL + RF + + A+V G + L LA Sbjct: 69 LSLGPELDAPTRFCAAIAASVASVVQGDVSPSSRHDPTE----------ALIAALAAVPD 118 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 LYL++D + + ++ I + L L + +R P L + L ++E Sbjct: 119 ELYLMLDGAEYLRDTGAWAVLQALIDARLPRLHLALATRCRPALRLGQLGAEGVVVEFDD 178 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 + LAFT E + A S R+ + GW ++++A Sbjct: 179 ESLAFTLAETRACLPPESG----QAASVRLMEATRGWPAGVRMLA-------------GG 221 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 R + + L Y + V + + L A L L VTG + Sbjct: 222 RAPDDSRAALDAYWSEVVAPGLSVGQARLLRWLAWLDRWTPELAAEVTGVPRAAECARSL 281 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 QG+F+ W HPLF ++LR+ A L +HR A +W+ G EA+ Sbjct: 282 VGQGIFIGPARAHAGWHTLHPLFADWLRRSMPLAGADRL-ALHRRAVAAWLRVGSSGEAL 340 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HA+ A D ++ ++ ++ S+L L + + +++ P L L AW Sbjct: 341 DHAMRADDGGLVAHVVREAMPAMPALSQLRALPDWIDQAGVKHVVDEPALWLAAAWACTV 400 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER-LAKLALEELP 480 R GE LA D + + +RA +A +P + LA+L LP Sbjct: 401 AARLGEAERWLAMVA------GCDDVAPQVALVRASIAFQKDDPATMDVWLARLGGHALP 454 Query: 481 -PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ--QSEI 537 P + R G +LH + + R H L ++ + Sbjct: 455 HPSLEHIRAALAVRCGAMLHR-----------PEFPPVPRLEAAPHDELVAMAHGAAALT 503 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 + +G + A A ++ + H + A L R +EA + Sbjct: 504 MLLRGDARRAQAIGMPAARMAQQIHGRRSVSACVCAVPVAAALLEQDRAEEAAEMMACWL 563 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 ++ P + + GD AR+ L + G+ RV Sbjct: 564 DLAHHSSPDVMIVATLCQARLQWLAGDQHGARATLAEAQAHAA-GRGLMRVQLRLLAQRV 622 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 ++ GD A A L A + Sbjct: 623 VFAIQAGDLRHAGLLQDELD--ALAATLDASDMRAREVGTIAALSRVRVALSAGNPVGAL 680 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 A + SD L+L++ L+ + D ++++ L+ A G + Sbjct: 681 AALEPVRSDNAGALVLIDLLFARVNAALDRPQLVVRHLESALAAGLRLGLLRMLRDEPGI 740 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLT 837 L + + + +R + R PE LT Sbjct: 741 PALLDCVQPSGDAVRDNWLGRVRAAKDQLQQPATCLPMIRRRRRDGEPEH--------LT 792 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 RE ++ L+ SN++IA L ++ T+K ++R +Y KLGV+ R + + + Sbjct: 793 PRERDIVALLEQSMSNKRIALVLNLSVDTVKWNLRQIYAKLGVSTRYEVILAVR 846 >UniRef50_Q5YUK9 Putative transcriptional regulator n=1 Tax=Nocardia farcinica RepID=Q5YUK9_NOCFA Length = 872 Score = 334 bits (857), Expect = 8e-90, Method: Composition-based stats. Identities = 178/895 (19%), Positives = 308/895 (34%), Gaps = 59/895 (6%) Query: 9 RPVRLDHTVVRERL---LAKLSGANNFRLALITSPAGYGKTTLISQWAAG---KNDIGWY 62 PV V R G + R L+ +PAG GKT L + A W Sbjct: 22 VPVLGFPLVPRAAADAEFEHFLGPGSARALLVCAPAGSGKTVLAAHHALSDDVTRPPVWV 81 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP 122 ++ N +R+ L G C + + A T+ QL ++ P Sbjct: 82 TVTAELNDADRWWHRL---------GDCFGFDPTGPAGEPAGATAAAEQLLAAVSAGPGP 132 Query: 123 LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 LV+DD HL+T+P++ + IRH P L +V+ R P + L + ++ +G+ Sbjct: 133 RVLVVDDAHLLTDPLVLAGLEHMIRHAPPFLKIVLCGRFEPPIRWQALELDGRVTRLGAG 192 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 L+F + + + E +++ D GW ++++A+ + ++ R Sbjct: 193 TLSFDTAQIAAVL-AQHGCELTPEELAQVTDITRGWPALVRIVAIYLAAHAEDRDRAVRV 251 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 LA ++D+L E++ + R F+ +++I S L + G + +E Sbjct: 252 LA-RAPHAVADFLCGELIAALPEQVRQFVSETSIPASYTPELAEHLAG-PAAPSHIAYLE 309 Query: 303 RQGLFLQRMD-DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 R +D + G W YHP+ + Q AA L E+HR A + G ++A Sbjct: 310 RINFPFTSVDTERGRWISYHPMVRRYFATELQRVDAARLGELHRQLAGWYTVAGMYTQAF 369 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 H LA G +L D L + + + E L +L +P + +L+ Sbjct: 370 DHVLATGSDELLVDFLRAEGVAATLLGCGAAVLEMLDQA-QPALSNDPFVWMLRVIDALE 428 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALR--AQVAINDGNPDEAERLAKLALEEL 479 + + + L D AL Q + P + +A E L Sbjct: 429 RGDAAQAHAYLDLVRARGGDTESVAPPEWLRALLLGGQAHVRTVPPGDPGAVAIP--EPL 486 Query: 480 PP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 P G G + G+ + +A L ++ + + Sbjct: 487 PTVGRADIDGYLAVHAGMLRVLHGDRVSGERDLLVGLALAEHAQQPRLVLHAVCRLAMAA 546 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 G L T E +A +L E + + A + + AR + E + Sbjct: 547 GVAGELTTVRERARQAVELAVEFDADGTADAVLAATMAAFVDYLQARREPRELVSPPARR 606 Query: 599 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 658 ++ Q ++ DN + LLG + + V Sbjct: 607 RRDGTTEPTAGWWAEIVTQLTVLDAAPDNHAAAARLRRGLLGLLDEVGAAATTGGLLPVA 666 Query: 659 YWQMTGDKA-AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 W + + L H A+ +A L + EL Sbjct: 667 IWSLLHLREDTVVQLLVHRARVVLGPTCP------EVALGAAALAHTAGKPAAVHELVVP 720 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 + LLL + GR + L AL+ A + F+ A+ Sbjct: 721 LLGSDHPMIVVPALLLYATSSDRLGRTRTSAEALELALQQAVPDHLVRPFLDVPGAVP-- 778 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLT 837 + H F H D F + + +H V + LT Sbjct: 779 ------------------------LLASHAGSFGHLD-RFADEIRHHLAVRRHLTGHSLT 813 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 E +VL + +G + QIA +L V+ T+KTH+R +Y KLG+A R DA+ A+Q Sbjct: 814 GTELRVLKHLPTGRTTSQIAADLGVSVNTVKTHLRGIYGKLGIASRADALTEARQ 868 >UniRef50_Q0AV95 ATP-dependent transcriptional regulator-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AV95_SYNWW Length = 838 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 159/885 (17%), Positives = 301/885 (34%), Gaps = 83/885 (9%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQ 70 L+ + ERL +L+ N + + + +P G+GKTT ++ WA + ++ D Sbjct: 5 PHLNDIFMSERLKQRLNEINTYPITTVIAPMGFGKTTAMNWWAKRQVK------NQADAV 58 Query: 71 QER----------FASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 R F A + + + + ++++ L L L+ Sbjct: 59 ILRQIIVTDSITDFWMGFCRAF-KGYPELTEQMKALGYPQDASAISMLAELLDDALSPSA 117 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 S +Y+V+DD H++ + + F R P+++ +++LSRN +R+ + L EI Sbjct: 118 SQIYMVMDDLHILQQKPLTPLLLFLSRSLPDSVHIILLSRNQILNEEERMRLGNLLGEIT 177 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 + L + QE + R A E + + GW + + L AHK Sbjct: 178 ADDLRLSQQEL-AVYAKRCGLEPSAEEINVLATLTEGWISMVYL------NFKAYAHKGC 230 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + + L D +L+ + R FL+ + + + L Sbjct: 231 WLSSSTDIFTLID---QVLLNPLPERQREFLILIGMANEFTADQAAYLWQHPDAVELLTS 287 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 + + F+ R + + YH + + R + +L A E + + + A Sbjct: 288 LSKNNAFITR--NENGIYRYHHMLRHCTRHKFAEKLEAYRKESYSRLGQWYFDHEDYISA 345 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 A D L L N + P D L+ +P +++ M Sbjct: 346 YFAFADAQDWDSLLATLEKDKSKSLNAEHSEAFFSWISECPEDILMAHPSALVICMITMF 405 Query: 421 SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP 480 + + E+ + + ++ T + L G+ + AE Sbjct: 406 TMNNIPEIQRMKSLLIEAMEQDTVLTSQERDDLL--------GDAEVAESFL-------- 449 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 Y+ I+A S R+ AL+ +T D W ++ S+ Sbjct: 450 ---SYNNILAMSAYHR---------RACALLSRTSLSVDPKDAWTFSAPSIFMMYHSSVG 497 Query: 541 QGFLQTA-WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 599 + A + + +++ H A L + +L +A+ + R + Sbjct: 498 GADRENAEMKECMPYYYQVSDGHGNGSEHG-----FAADLFYERGQLTDADIANRMALSA 552 Query: 600 LSSYQPQQQLQCLAMLI-QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 658 + C L + +L GD + L K ++ ++ + + Sbjct: 553 AKQKNQFSIIICCDFLSMRMALLNGDFNEMNKLSIDCREWLHREKQYT-LLNTLDMCQGF 611 Query: 659 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL--EELNE 716 + + G AA WL E F + Q+LL + + +V EE Sbjct: 612 LYALLGHPEAAPKWLAEGRLQETL-VMFPATPMLHTFYNQLLLAQEQWTAVVARREECEN 670 Query: 717 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 776 + + L Q GR +DA L AL +A G + F + Sbjct: 671 LYGIYHNVLCEIWLHIQLAAALEQIGRHADALEELRTALSMALPDGIVMPFAESEAYITN 730 Query: 777 QLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPL 836 L++L Q PE +RIL H K E++ E L Sbjct: 731 LLQELGQQGIYPE----EIERILTLAQSFHSAKQKILWEHWSEH-----------ENYGL 775 Query: 837 TQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 + RE +V L +N +IA EL +A T++ + ++ KL +A Sbjct: 776 SDRELEVARLAAQRKTNLEIAAELHLAEGTVRNQLSRIFDKLNIA 820 >UniRef50_B5EC60 Transcriptional activator domain n=1 Tax=Geobacter bemidjiensis Bem RepID=B5EC60_GEOBB Length = 1055 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 177/875 (20%), Positives = 307/875 (35%), Gaps = 49/875 (5%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYSL 64 K++ P V RERL L A + + I+ P G GKTTL+S + + WY Sbjct: 5 KITAPGLAAGIVHRERLFQVLDHA-DKPVRWISGPGGSGKTTLVSSYLETRGIPALWYQA 63 Query: 65 DEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLY 124 D+ D+ F Y+ A Q + + + + T A+ +P Sbjct: 64 DQSDSDPATFFYYMGLAFQDSVSPDREPLPLLTPEYLAGLKTFSRRYFQQLFAQLPAPYA 123 Query: 125 LVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQ 183 +VID+Y I HE + + P+ +T++ SR P + + +G Sbjct: 124 IVIDNYQEIPAGSPFHELIAEGLAQCPDGITVIATSREEPPAVLTVNETAARFAFLGWSD 183 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L F+ EA++F + SS IE + + GW L LI S T + L Sbjct: 184 LRFSFDEAREFAGTQTSSHIETEALASLYAKTDGWIAGLLLILESLDGGTLDQ----KLL 239 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 + + Y D++ + D ++FLLK+A++ + + R+TG + + L + R Sbjct: 240 QELPLDKVFVYFADKIFEARDGELQNFLLKTALVPGITAQMAERLTGIGSSEQILSRLCR 299 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELA-AELPEIHRAAAESWMAQGFPSEAIH 362 F + + YHPLF FL R + L AEL EI R AA +A Sbjct: 300 NRFFTAKSSPADPVYQYHPLFREFLVARAEGTLPAAELREIRRQAASLLKGADRAEDAAG 359 Query: 363 HALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQ 422 A D + +++L+ A L + L+++P +S+ NP L+ + + Sbjct: 360 LLTEASDWDGVAELILDCAPLLAAEGRSETVRGWLESVPAESVAVNPGLLYWKGVCLLLH 419 Query: 423 HR------YGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER-LAKLA 475 + E L A+ + + + AE + + D ++ LA L Sbjct: 420 SPPASRVCFREAYDLYRLADDRVGMLLSWSGGAEAS-------LYDREFTPLDQWLALLE 472 Query: 476 LEELPPGWFYSRIV----ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 + G SR + A S+ + + ++ + R + L S Sbjct: 473 EMRIEEGDIPSRQLEEQMAMSIFNAMAFRQPHHRDISKWRERALSLVRGCADINLRLQSA 532 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL--WAWARLDEA 589 I G A E+ + + + + + AQ+L + Sbjct: 533 IHLVVHDLWNGNFGRASVLLEQTLAMASTGKPSPMT---RITIMNAQVLNCYFTGAWASG 589 Query: 590 EASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 A A + + +Q + C+L RGD A LN + + L G Sbjct: 590 VAVAFDALRMADETGVHVWDIQLMGNGAGCALCRGDSATADELLNAMRDRLQWGVRLD-- 647 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL--LGEFEP 706 I + +R + AA L + + I A L G Sbjct: 648 IGQYHGLRGWQESLARRFQAAIPHLELSLESLQGTGFLAPEAVMLITLADNLRMTGNPTR 707 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 AE L + AR + LL +L A +L A+ L + G++ Sbjct: 708 AEACLSRACDIARGMGSGYLEFLCLLNSAELALDAEDDVQGDMLLRRAMALGSAGGYL-- 765 Query: 767 FVIEGEAMAQ-QLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE-RLLNH 824 G L +L ++E R++R H D + ++L Sbjct: 766 ---NGWCWRPDALVRLCTKALENDVEAAYVTRLVRHWALAPETPPQHLDNWPWQFQILTL 822 Query: 825 PEVPELIRTSPL-----TQREWQVL-GLIYSGYSN 853 + PL +++ ++L L+ G SN Sbjct: 823 GGFQLIRGNEPLILAGKSRKPLELLKALVAFGGSN 857 >UniRef50_A5UYI0 Transcriptional activator domain n=2 Tax=Roseiflexus RepID=A5UYI0_ROSS1 Length = 1204 Score = 328 bits (841), Expect = 6e-88, Method: Composition-based stats. Identities = 171/844 (20%), Positives = 299/844 (35%), Gaps = 30/844 (3%) Query: 13 LDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIGWYSLDEGD 68 + ++R L A L+ L ++T+PAGYGKTTL++QWA + W +LD GD Sbjct: 90 REGVLLRPDLQALLAEVRLHPLTVVTAPAGYGKTTLLAQWAQELGRTGAPVSWLTLDVGD 149 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMA--QKRQYASLTSLFAQLFIEL-AEWHSPLYL 125 F +YLI A Q A + + L +L + S +L Sbjct: 150 RDPALFLAYLIRAFQMAFPALGRDASRVLSSAASLERDWPLVAGALCSDLQRQVLSAAFL 209 Query: 126 VIDDYH-LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRDQLLEIGSQQ 183 +DD H +I + VI + + + +R P L +VV SR + ++ LR +L+E+ Sbjct: 210 FLDDLHQVIDSAVIGQILGYLLRAAPPTLHVVVASRREVHIPPLSRLRTEGRLVEVRQAD 269 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L T ++A+Q + + E + + GWA +LQL A + + + Sbjct: 270 LHLTPEQARQLLTIQ-GVALSDEELTTLLARTEGWALSLQLAARALAELPAERRSAFVEA 328 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 G + L YL DEVL ++ FL +A+ + L+T V ++ L + Sbjct: 329 LGGGSEQLLSYLADEVLADLPSDVLEFLRLAALPPHFDADLLTAVLLRDDVPYLLRRVRT 388 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQGFPSEAIH 362 GL L +DD GE +HPL+ L + + E L HR + +G EA+ Sbjct: 389 LGLPLTPLDDQGERLRFHPLWRELLLRGIDEFVDDETLAAFHRRFGRQFEMRGELEEALE 448 Query: 363 HALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQ 422 H AG L LL AW L N + ++ +P + NP+L+ + + Sbjct: 449 HYAHAGSVDNLERALLERAWPLLNSPRRDTVRRWIEQIPVERRDANPELLYMWGYSQIVS 508 Query: 423 HRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP-P 481 ++ A + + A + P + + A+ Sbjct: 509 -DPSRAAQIIEHAAELFRRSGAHARELRAYSDLATLLFWQARPADFAAVCVRAIRAANLA 567 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 +SR A + + +L +G L+ +L + + + WH+ L ++ Sbjct: 568 RDAWSRGAALTCVAAMLAIRGRLSAALRVARHAAAHP-LNPAWHWLLAMIVTSIHNQL-- 624 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-L 600 G A ++A Q ++ M + L+R RA L+ + EA A L Sbjct: 625 GRPDDALAVVDEALQSSQIDSNDR--MRQNLLRQRAMALYQIGQPAEAITLALDVHRYLL 682 Query: 601 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 Y+ A L +G D + + + + +++ + + Sbjct: 683 DYYRDGTAGVSAAQLALLLSLQGRFDESAFYIAQA-RAAFHDLGALAPLASLQVIELYNM 741 Query: 661 QMTGD----KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 716 + G AAA+ ++R + E I + GE A +L+ + Sbjct: 742 RGRGQAARAAAAASAFVRRLDEVEGVAPDLRLRLLLAIVLGEA--GEHRQALDLLQTTVQ 799 Query: 717 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF----ISHFVIEGE 772 + L L L G + L +A + + Sbjct: 800 QMQHRGYRLFLASACLYGAALAGVCGEGALRDAWLRTGWTIAADDRSRFLPMMPVSALKD 859 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 LR I + + + H E+ Q + V RLL Sbjct: 860 VAIAALRTGIAPDAVGRILPHHVGDEAVELLQDALNDPDPSVRAHVVRLLGEVGAAAAYP 919 Query: 833 TSPL 836 L Sbjct: 920 ALRL 923 >UniRef50_A5V1C9 Transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1C9_ROSS1 Length = 1095 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 161/774 (20%), Positives = 281/774 (36%), Gaps = 26/774 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIG 60 ++ +L P + + R R+ L+ ++ + L+T+PAG GKT ++ +A G + Sbjct: 20 VLLPRLEPPPQPARLIERPRIDGLLAAVADYPVTLVTAPAGGGKTVALTGFARHGGWPVA 79 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W LD D A +L A + T + T+ + +L L Sbjct: 80 WCRLDAAD-TPISLALHLATAFRPITGFDPSCFVTVHP-------VDVLDRLINALTALG 131 Query: 121 SPLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRVRDQLLE 178 LV+DD H P + + I P L LV+ SR +P L + + R +L Sbjct: 132 DETLLVLDDVHCADRRPELRVLIEHLIDRLPPRLHLVLASREMPSLAPLPTVAARGELYR 191 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + QLAFT++EA++FF P + + GW AL+ A + + H+ Sbjct: 192 LNRAQLAFTNEEAREFFAA-CGLPPSPYD-DELNTLARGWPLALRFFATARVDLGATQHE 249 Query: 239 SA--RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 RL A L YL EVL ++ R +LL +A++R ++++ V + + Sbjct: 250 PILPERLLEHIAPQLDAYLAREVLGDLPFDLRTWLLGTALMRWIDESACAAVAELADLHI 309 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L+ IER LF++ + D + PL + + EL IH + + +G Sbjct: 310 DLKMIERHELFIETLPDGRSVYQ--PLQAASFARLAERELP-NWRSIHAQLGQYYATKGD 366 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 A HH LAA L A + + ++ L ++ +P D N L+ +A Sbjct: 367 DHGAAHHFLAAAQWEEASAALSRMALAGVSGAQAVALLSWIEQIPTDH-RNNAALLEARA 425 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 + RY + +AE + + +A+V I+ P A L K A+ Sbjct: 426 IAERRLGRYAQALESYRQAEDRYRAQGDMDGQVRALRGQAEVYIDTVQPAPAAVLLKRAM 485 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-----RQHDVWHYALWSL 531 + LP R S+ E +G ++ ++ + A R S Sbjct: 486 KLLPRHRRAERATILSLQAENWINRGRADVAIFIIAAAHREAYGRTSRGDPGGGGLRRSA 545 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + +L G L A E+ L + + +H + + A + A A Sbjct: 546 VLSPRLLLRSGRLVEARRLLEEELGLDTGRARGEHMLHRDPLLLLALIECMLGNGVRALA 605 Query: 592 SARSG-IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 A+ G +E P + L L D + R+ + + Sbjct: 606 LAQRGLLEAQRGDSPLTEAIAHMRLGHAYLVTASSDEMAYRHYRIALDMIESSGIPRMRA 665 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP-AEI 709 + G+ AAA + R +A + +P A Sbjct: 666 EVMMGLTLLEGHAGNLAAAEAYAREGLDRTLEAGDDWMAALIWLALGSVAATAGDPRAAQ 725 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 L E + L+ + Q+G++++A R L L L + GF Sbjct: 726 WLHEAQQRFVRGDDQYGQTVALIWEAHILLQSGKEAEADRTLARLLGLIDACGF 779 >UniRef50_UPI00006A2BBB UPI00006A2BBB related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A2BBB Length = 874 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 174/863 (20%), Positives = 298/863 (34%), Gaps = 51/863 (5%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDIGW 61 K++ P V+R RL +F ++ +PAG+GKT+L++QW W Sbjct: 41 KVTPPRTPRDLVLRTRLAPTADALRDFSCFVVQAPAGFGKTSLLAQWRKEFQQTGVAAAW 100 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 S D R ++ AV+ A +G + L + L EL + Sbjct: 101 VSAQAKD-DPHRLVQSMVLAVRMA-SGQSGFGRMAFEFDGTDPLEHVTV-LLAELVQSAQ 157 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 + L++D+ + + + +R P NL V+ +R QL I +L Q + +GS Sbjct: 158 DVVLIVDEADKLPEASRKTLI-YLLRQAPPNLRPVIAARPDWQLDIDDLVAYGQCMVLGS 216 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 L F E Q R + ++ ++RI GW +QL A + ++ Sbjct: 217 PLLRFDLGETLQLVQARFGAQVDRTLAARIHALTEGWPLGIQLALTIAARGADASAGVTG 276 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 + L LV +L N++ R FL++ AIL ++ L V G+ + RL + Sbjct: 277 --MALLGGELQGQLVKLLLANMETEDRDFLVRIAILDHLHPDLCRVVAGDTHALERLARL 334 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 + + + G W H L + LR A E H A + QGF +A Sbjct: 335 SSET-PVFASAEGGTWLRMHALVRDALRLDFNDLSARRQSEAHARATQWLANQGFVDDAA 393 Query: 362 HHALAAGDALMLRDILLNHA-WSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 HALAAG + ++ SL + + E L+ +P D L P+L+L AW + Sbjct: 394 RHALAAGQQQVAYNLAERSLYESLMQRGRRAAVLEWLEHMPADELDRRPRLLLAVAWTLA 453 Query: 421 SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP 480 S R+ E +AR + D M E + + A+ +PD L ++ +P Sbjct: 454 SSERHAEAGRFVARILAQPDVG--DAMRCECALILSGAAVFADDPDRCVDLHAPWIKVVP 511 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE--QMARQHDVWHYALWSLIQQSEIL 538 V + + GE ++ L+QQ + ++ H + WS + Sbjct: 512 LTDPVLLQVHANRVAYGALLAGEPAQARLLLQQLAVGERSQPHSHGYIGRWSALIIGLSC 571 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 +G +Q A + + A + + L + A W +A ++ Sbjct: 572 VWEGQMQQAKQVLQPALASAEAELGRRNRFSCILAALLATAAWEGDSRADAALLLADRLD 631 Query: 599 VLSSYQPQQQLQC-------------LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 645 +L L L D A QL RL + + Sbjct: 632 ILEHSGLPDALMLAYRTAARVAAAEGAEYRALELLGALDAVGATRQLPRLRLVSLADQVR 691 Query: 646 SDWISN-ANKVRVIYWQMTGDKAAAANWL-RHTAKPEFANNHFLQGQWRNIARAQILLGE 703 S A R + Q+ AA H + + + + +A A + + Sbjct: 692 MHARSYRAQTCRELCAQIEAQIEAALGPDPAHPLRGPIWRRNAQALRDQALAFAALAARD 751 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 + A L + AR R+ L L + G AQ ++ +A+ LA G Sbjct: 752 WHAALAPLARAQKYARRTRMGRLQIEMLGLRALALDRCGE--AAQHLVHEAMDLAATYGL 809 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 + +A + L +T+ Sbjct: 810 RRVLIDAHPELAAWVGALSGNDTVHPAASPTGPTGPTPTGPPVAAAA------------- 856 Query: 824 HPEVPELIRTSPLTQREWQVLGL 846 LT +E +VL L Sbjct: 857 -----VAAPLRRLTPKEREVLTL 874 >UniRef50_C6PMR7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PMR7_9CLOT Length = 821 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 148/894 (16%), Positives = 332/894 (37%), Gaps = 95/894 (10%) Query: 13 LDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI-GWYSLDEGDNQQ 71 + RER+ LS + L +I +P G+GKTT + ++ + ++ W + Sbjct: 3 SSKILKRERINRILSKVYEYPLTIIEAPMGFGKTTAVKEFLQSEKNLYIWITFLNSSQSL 62 Query: 72 ERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYH 131 + + + +++ + + L ++ VIDDY Sbjct: 63 NYIWNQFSEEISKLDAKSGKSLKSLGFPVDVPQSEKVLSVLNN--IDYKEKTVFVIDDYQ 120 Query: 132 LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEA 191 L NP ++ + ++ + +N +++++R+ ++ ++ +D I QQL FT +E Sbjct: 121 LCPNPKMNNFITKIVKEKIDNFYIIIITRDTTKINLSEFLFKDMCQIISQQQLRFTKEEL 180 Query: 192 KQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHL 251 +++ + + I + +I + GW + +I L + S + Sbjct: 181 REYC-LMMKNNIPDDDLIKINEYTDGWISLAYMILLGLEKGIPVGM----------NSTI 229 Query: 252 SDYLVDEVLDNV-DLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQR 310 D LV+ L N+ ++FLLK +++ + +T EE L+++ ++ F+ Sbjct: 230 DD-LVENTLFNIYGENIQNFLLKLSVMDNFTINQAFYITQEEKTDEILKKLRKENAFVFY 288 Query: 311 MDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDA 370 D+ + + H + +FLR + ++ A EL E++R AE +M + A + AGD Sbjct: 289 -DEASKIYKIHNVLLDFLRIKFSFK-AKELKEVYRRLAEWYMEKRRFQTAFGYLYRAGDE 346 Query: 371 LMLRDILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVN 429 + +L + +N S + + + + + P L + ++ Sbjct: 347 ERI--LLELNKPENAYNESLFEGYLDMFSKISEELIYKYPVAYLRYMLCYIVAGQ--DIE 402 Query: 430 TLLARAEH-EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI 488 T + E ++ + D + E+ RI Sbjct: 403 TCMQNLERLQLFYEKADNIEVEYR---------------------------------DRI 429 Query: 489 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 548 +A ++ + +L + + + + + + + + + Sbjct: 430 LAEILIIKKFAVFNDLEKMCIISDKARSLLKGKQSYILLRENEFTFGSPHLLYIYFRK-E 488 Query: 549 ETQEKAFQLINEQHLEQLPMHEFL---------VRIRAQLLWAWARLDEAEASARSGIEV 599 +T ++ Q++ E ++P+H L A+ + AE ++ I Sbjct: 489 QTLKRVLQVVVE----RMPLHAKLADGNGTGCEYLGLAEYALETGDFEAAEINSFKAIYK 544 Query: 600 LSS-YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 658 + Q + L++ + +G + A +LN+L+ + HS + + + R Sbjct: 545 AKTKTQTGIIINAYFNLMRLYIFQGKIGEAIQKLNKLQEKIDKLN-HSIYNTTIDLCRGY 603 Query: 659 YWQMTGDKAAAANWLRHTAKPEFANNH-FLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 + G + WL+ + + + +A +L + E++ E E Sbjct: 604 IYACIGQRKKIPYWLQIGDMTAEDFVYQGMAFSYIVYGKAVMLSKNYIKLEMLAESFVEP 663 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 N + + + VL AL A + FV + Sbjct: 664 FSIFNNEFGFIHNSIFDAVAKYNLYGMEEGVAVLEKALLKAQSDNIVMPFVENASHIMSM 723 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLT 837 L ++ N L+ +R++ Q++ + + +E L+ Sbjct: 724 LEVILNRN----LKNKYIKRVIDLSKQYNENILSSNEEKV-----------------KLS 762 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 QRE ++L L G +IA +L ++ T+KTH++N+Y+KL V+ + +A++ AQ Sbjct: 763 QREIEILTLTVKGLKRSEIAAKLNISEGTVKTHLQNIYKKLQVSGKFEAIKIAQ 816 >UniRef50_A1TX00 ATP-dependent transcriptional regulator-like n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TX00_MARAV Length = 756 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 162/772 (20%), Positives = 277/772 (35%), Gaps = 41/772 (5%) Query: 33 RLALITSPAGYGKTTLISQWAAGKNDI-GWYSLDEGDNQQERFASYLIAAVQQATNGHCA 91 L+++PAG+GKTTL+SQW + + W +LD DN F + + +A+ + Sbjct: 2 PFVLVSAPAGFGKTTLVSQWLEQEKPVHAWLTLDHRDNAPALFWNAVASALARVNPRFAI 61 Query: 92 ICETMAQKRQYASLTSLFAQLFIELA------EWHSPLYLVIDDYHLITNPVIHESMRFF 145 T+ + + L LA + S L LV+DD+HL+ P + E +R F Sbjct: 62 RESTLLSALEPGAAVDPITMLVNRLADYSRTWQAPSRLILVLDDFHLLDQPALLEQVRRF 121 Query: 146 IRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEA 205 I P L +V +SR P + A L R Q++ +G + L F ++F R + + Sbjct: 122 IDFAPGFLRIVCISRLDPPIRTAQLLARQQMVRLGPEVLRFDLALTRKFVQAR-RADLSE 180 Query: 206 AESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDL 265 + ++ GW ALQL ALS + G LSDYL++EV ++ Sbjct: 181 EQMLQLHQRTGGWPAALQLSALS--------ENPLSHVPGPGQRALSDYLLEEVFAGLEP 232 Query: 266 ATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFG 325 + FL ++L + + + + + + L Q + W+ H L Sbjct: 233 GLQGFLQDMSLLPLFSHEVADEARNGSDAADWIAAMRERNLLFQSYGEGHYWYRLHDLLI 292 Query: 326 NFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLF 385 ++L + Q I AAE++ +G EA+ LA G ++ L Sbjct: 293 DWL--QAQDREPERESSIRIRAAEAFRQRGLIVEALELFLAEGCYDQAEALV----PLLL 346 Query: 386 NHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIRED 445 +LS P + +P L+LLQA +YG V LA A+ ++ Sbjct: 347 QAEDLSGYRSLPSRFPDSVRMCSPALLLLQALFAFMDGQYGAVLEHLAAADRLLQSTDPS 406 Query: 446 TMHAEFNALRAQV----AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 501 + + A G+ EAE+ L + LG + Sbjct: 407 PDTEALQFVSMLLGWPSARFAGHRAEAEQSLTQIQARLASAPAGLQHWGLYTLGTEAFME 466 Query: 502 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK------AF 555 L + L+ A AL L+ +L G + A E+ Sbjct: 467 ARLGPARTLLTDALAGALDSGDNPCALRCLVMLVPVLVQGGRIGDARRCYEQTRLKLAHG 526 Query: 556 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS-YQPQQQLQCLAM 614 EQ + L L +A RL EA A + L Y ++ + + Sbjct: 527 PRSKEQVCLLAYLEGLLALEHHDLEYATKRLGEAGLIADQHLTPLDQLYLAFERFRLGMV 586 Query: 615 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 674 L L + +L +++ +L ++G ++H + I + + G+ W + Sbjct: 587 LRDSELWQQEL----TRIEQLHQVMGQLRWHHN-IPRPEVLEALARWTEGNGFPLILWAQ 641 Query: 675 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN-LLL 733 +P N + + L P L L A L+ + R L+ Sbjct: 642 SDPEPVVGNR--FCTLNETLLKLIGQLLAASPVARELAALRTEAEEAGLLQLVCRLDLVS 699 Query: 734 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLN 785 L + A + L L L G + FV + L ++ Sbjct: 700 LMVQAFGDQDPEGAVKKLDALLALWVPRGLVRPFVDADPRLDSLLARISHEG 751 >UniRef50_B8DMH8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DMH8_DESVM Length = 839 Score = 320 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 176/897 (19%), Positives = 319/897 (35%), Gaps = 82/897 (9%) Query: 7 LSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-----IGW 61 ++RP R D RL A+L A N R I +P+GYGKTT+ + + + Sbjct: 1 MARPRRTDIPYFSPRLKARLHEALNMRSVFIEAPSGYGKTTIAQNYLRERLPEGATWVRH 60 Query: 62 YSLDEGDNQQERFASYLIAAVQQ--ATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 ++E + +Q+ A G + + L SL +L Sbjct: 61 VCVEES---PQAAWRRFCQTMQKVDAHTGRTMQSYGLPDEDSAGHLASLLREL-----PC 112 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 +P +LV+DD+H + V + F+ H+ L L+V++R + + + +L + Sbjct: 113 STPFWLVLDDFHHLAPHVPAPIWKAFLEHEAAQLRLIVVTRPVATRILPYEKAG--ILRL 170 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L T E++++ R + A++ + GW A L + A S Sbjct: 171 NADDLRLTEAESREY-ATRAGIALNEAQAQELHRRAEGWIIAATLYLRRWNERGAFAPAS 229 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN-GQMRL 298 + + S + L D V DN+D A + LL+ + + + + G+ Q Sbjct: 230 TQ----THDSGVDGLLRDVVWDNLDEAGQECLLRLSPFDAFSAEQAAFLLGKARLTQKTW 285 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 ++ + R D + H +F R+ + AA + G Sbjct: 286 AALQHNAML--RHDPASGLYYPHSTLLDFTRRIFAELPEETRRDALLAAGDWCARSGDLE 343 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW- 417 A D + + L + + LL+ P + + A Sbjct: 344 NAFVFYYRLRDYERILALD-------------------LSGMKGEGLLDMPGVAYVPAIR 384 Query: 418 -LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVA-INDGNPDEAER--LAK 473 + + R + L+ + D+ H EF AL A++A I + P + + Sbjct: 385 DIAANSTRAMKATHPLSAIALAL-DLLSANCHEEFGALFAELADIVETEPFAPHQRDYLR 443 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 L L Y+ I A V + +L L + M R D W + S++ Sbjct: 444 GELRLLESFTCYNDIAAMGV---------RMLEALQLAGRQTAMVRLDDSWTFGNVSVLF 494 Query: 534 QSEILFAQGFLQTA-WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 + + A +T + ++ H P + A+ D AE S Sbjct: 495 MFHREPGRLDGELADMQTYCPHYLALSGGHGAGGPEL-----MEAECRLHRGDADPAEIS 549 Query: 593 ARSGIEVLSSYQPQQQLQCLA-MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 + + + +L + +L RG+ ++ L + G ++ ++ Sbjct: 550 GYKARHQAALREQASIVIGAEFLLGRVALLRGNAAALADAMDNLTGIAGQFPQRANRMA- 608 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG-QWRNIARAQILLGEFEPAEIV 710 A+ R + A+WLR A F+Q + + RA+ LL +P ++ Sbjct: 609 ADMARSFLMSLLHQPDEMAHWLREATPGSLARRFFVQVLPFAELCRARYLLLSGKPELLL 668 Query: 711 LE--ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 E A +L L L ++ G++ A L AL LA G + F Sbjct: 669 GENEAALGLASALNYSLALTYGHLHGAAAWFMLGKRDAAADSLRAALALAVPDGLLLPFA 728 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 E L + + PE+ A + + + A D + R Sbjct: 729 -ECWPWIGPLLKKMHPGVCPEMPPAFAADVFSLAERLEAGRRAVADTLYSAR-------- 779 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 L+ RE +V L+ G S +IA L ++ T+KTH++N YQK+G + R D Sbjct: 780 ---GRFGLSPREDEVARLMADGLSYGEIAQHLCISLNTVKTHLKNAYQKVGTSSRSD 833 >UniRef50_UPI0001C32137 ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32137 Length = 730 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 144/620 (23%), Positives = 239/620 (38%), Gaps = 18/620 (2%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYSLDEGD 68 P T +RER+ A L A + L ++ +PAGYGKTT ++ W ++ D W SLD+ D Sbjct: 18 PRPRRETFLRERVSALLDHALDQPLTVVCAPAGYGKTTALADWCRRRDGDGAWLSLDDKD 77 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL--AEWHSPLYLV 126 N RF + L+A + + + E + ++ L + +V Sbjct: 78 NDPRRFCARLLATIDDLSPSELWMAEQALAGGSDL-VETVIPLAVDALGDRRGAAAAVIV 136 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +DDYH I H+ + + P + LV+ SR P L + R + +++LAF Sbjct: 137 LDDYHAIFEEACHQLVVALLDALPPGVRLVLASRTRPPLRLPRRRAAGAAATLDARELAF 196 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 E + + RL +E + I V GW L L+A +A + Sbjct: 197 DLDETGRLLNGRLRLRLERGQVEAIHARVEGWPAGLSLVASL---RDATALERFLETPER 253 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 +++YL +EVLD + +TR FL +++ L MN AL V + + +++ + Sbjct: 254 TPFEIAEYLTEEVLDALPPSTRVFLRRTSPLTRMNGALCAAVLDDPAARQLFDDVRESNV 313 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALA 366 F+ +DD W YH LF L + + + ++HR AA + +G AI HA A Sbjct: 314 FVIPLDDD--WVRYHRLFATLLERDLRRHEPTIVVQLHRRAARWFECEGMTEAAIDHASA 371 Query: 367 AGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYG 426 AGD +L W LF + + +L +P D P + + G Sbjct: 372 AGDGEHAARLLHGSWWPLFAERRYTTIRRTLARMPPDRGRYAPFCDAIDVLCLSLTG--G 429 Query: 427 EVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS 486 ++ + R E +D + + LR D A+ + G + Sbjct: 430 DLRLIARRLEQLDQDRDSPGVAEIVDLLRISPYYGDIERALADGWK---IWGRAAGDVDA 486 Query: 487 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQT 546 R L V+ GE A+ ++ E R D W L + + L+T Sbjct: 487 RARYAGKLAIVMWFAGERE---AIRREVEPYMRIADRPVVRCWELAALALTAADEDDLET 543 Query: 547 AWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 606 A + A +I E + L R EA + + S + P Sbjct: 544 AEQHARDAVAVIEAAGGESSLESHLAYLALGEALRRRGRFAEAHDHVARALRITSRH-PS 602 Query: 607 QQLQCLAMLIQCSLARGDLD 626 LA+++ L LD Sbjct: 603 ALYHGLALVMHAQLDLSTLD 622 Score = 75.4 bits (184), Expect = 1e-11, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 98/308 (31%), Gaps = 12/308 (3%) Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 R L + +A ++ + L + G D Sbjct: 427 TGGDLRLIARRLEQLDQDRDSPGVAEIVDLLRISPYYGDIERALADGWKIWGRAAGDVDA 486 Query: 649 ISNANKVRVIYWQMTGDKAAAA----NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF 704 + I G++ A ++R +P + E Sbjct: 487 RARYAGKLAIVMWFAGEREAIRREVEPYMRIADRPVVRCWELAALALTAADEDDLETAEQ 546 Query: 705 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 764 + V S + + L L + + GR ++A + AL++ + Sbjct: 547 HARDAVAVIEAAGGES---SLESHLAYLALGEALRRRGRFAEAHDHVARALRITS----- 598 Query: 765 SHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 H +A + + L+TL + R I R + Sbjct: 599 RHPSALYHGLALVMHAQLDLSTLDRRAARSRAKAARRIVDRFRDVGVVAERLAAVEDALD 658 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 E + S T E +VL L+ + + QIA EL ++ +T+K+H LY++LGV R Sbjct: 659 LPTHEAVAGSEPTAAERRVLELLPTDLTRRQIAAELRLSVSTVKSHTWRLYRRLGVDTRA 718 Query: 885 DAVQHAQQ 892 DAV A++ Sbjct: 719 DAVSIARE 726 >UniRef50_Q5Z0N1 Putative transcriptional regulator n=1 Tax=Nocardia farcinica RepID=Q5Z0N1_NOCFA Length = 863 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 175/882 (19%), Positives = 297/882 (33%), Gaps = 80/882 (9%) Query: 16 TVVRERLLAKLSGA---NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQE 72 + R L + A + R+ L+++PAG GKT L++ WA + D+ + + D Sbjct: 53 PIARPVLFEAVDAAVAARSGRVLLVSAPAGAGKTVLLADWATRRCDLAVHWVGAAD---- 108 Query: 73 RFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHL 132 + + A +P L++DD HL Sbjct: 109 -----------------------------EFTAAADPAAAVRARLATTTPGVLILDDAHL 139 Query: 133 ITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAK 192 + +P + F+ P LT+VV +R P + L ++ +L +G+ +LA T +E Sbjct: 140 LDDPAALAGLERFLLEAPPELTVVVCARFDPPIRWHLLELQARLTRLGAAELALTPEEIS 199 Query: 193 QFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLS 252 ++ A + + + GWA +++ A+ + A RL + Sbjct: 200 GLC-AEHGVTLDEAGRTALSELTGGWAALVRITAVHLAAHRDELAVLATRL----PHAVV 254 Query: 253 DYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMD 312 DYL E+LD + R FL + + + + L + G L+E++R G L R Sbjct: 255 DYLGAELLDGLSPTLREFLTVTGVPATFTEKLADDLVG-GGAGHCLDELDRLGFPLVRTP 313 Query: 313 -DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDAL 371 T WF YHP+ R + +H AA A G A+ H AAGD Sbjct: 314 RGTELWFSYHPMLRAHFRAEADRLGRDRIRALHLRAARWLHAAGHLPAALTHLCAAGDRA 373 Query: 372 MLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTL 431 L D + +L S+L L D L ++P + L+ + Sbjct: 374 PLLDFVTAAGPTLVLDGAGSVLFAELTRTANDVL-DDPYVWALRVLDALVHGDTADAVAC 432 Query: 432 LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVAT 491 L A A +AL A+ RL + P G Sbjct: 433 LDLALARRTHRTSFAPRAWTDAL--LRALAVDVAAATGRLPEPPGPVEPTGHADIDCYTA 490 Query: 492 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 551 + +G+L L+ + +A AL + + + A + Sbjct: 491 IQVATAAIVRGQLADGEELLHRGLALADHACHPRLALRAAARLAFAAGAAESTTAMRQRA 550 Query: 552 EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 611 +A L E L P + + A + E A + L Sbjct: 551 GRALALAREHDLLDSPDAAQAMTVAAAAAYLRGEQPEPTQLAAALAMHRDRDGAHSPLVG 610 Query: 612 LAMLIQCSLARGDLDNARSQLNR-LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 670 + L + A L+R + LL + + + A V++ + + A Sbjct: 611 RHGHLVGQLLAAETGTAVDALHRDMIALLDHDGIAAS--TAALLPHVVWALLRRHEPRTA 668 Query: 671 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 730 L A+ + + + ++E L +LR S Sbjct: 669 RLLVDRARNLLGD---VPDVTLARGACAHAEEKPRQTLELVEPLLREPAALR-PSSRVTA 724 Query: 731 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEL 790 LL ++ R A +L A++ A F+ F+ A+A Sbjct: 725 RLLCAIARYRLDRPRAAGDMLDRAVRDAADEEFVRPFLDVPGAVALL------------- 771 Query: 791 EQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSG 850 DE FV R+ +P I LT E VL + +G Sbjct: 772 --------------DVFSGRFGRDEPFVARVRANPAARREIARPALTDTELLVLKQLPTG 817 Query: 851 YSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 + QIA +L V+ T+KTH+R +Y KLG R A+ A++ Sbjct: 818 RTVGQIAADLGVSINTVKTHLRGIYGKLGANSRVGALDTARR 859 >UniRef50_C8X3C0 Tetratricopeptide TPR_4 n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3C0_DESRD Length = 1031 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 172/816 (21%), Positives = 272/816 (33%), Gaps = 35/816 (4%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWY 62 +K +RP L V R RL +L I +PAG+GKTTL++ + A + W+ Sbjct: 8 QAKFARPA-LSQVVPRARLFDRLREHGRSSFLWIAAPAGFGKTTLVASYLEAQEVPSVWF 66 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP 122 LD GD F L AV+ R L+SL F L+ +P Sbjct: 67 RLDGGDGDPNSFFLTLEQAVRLVFPD----APACVGPRFEQPLSSLSRNFFSHLSLVCAP 122 Query: 123 -LYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 YLV D+ H + + E + + L +V +SR+ P L D+L E+ Sbjct: 123 QTYLVFDNAHELEDSHEFWEMLSTGLACAGPALRVVFMSRSSPPDPFVTLLASDRLRELP 182 Query: 181 SQQLAFTHQEAKQFFDCRLSSP-IEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 +++L +E + I +A + +GWA L+L+ R SA Sbjct: 183 AEELRLNREEVVEMVRRDPPQAGIGSALIPNLLAACNGWAACLRLVLRHLRFAPLSAQWV 242 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 L Y E+ +D R FLL A+ + + TR+TG LE Sbjct: 243 DLD---RPPPELVTYFSTELFQAIDPDLRCFLLNLAVFPWFDADMATRLTGVAEAASILE 299 Query: 300 EIERQGLFLQRM---DDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQG 355 + + F D + +H LF NFLR + ++E ++ + A G Sbjct: 300 RMAGESFFTSVHRSAPDAPSIYIFHSLFRNFLRVEARKIFSSEQWQDLFQRAGRLLEEAG 359 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 AI+ AAGD L HA SL LE L LP P V Sbjct: 360 DAEAAINAYSAAGDTEAWVATALRHAPSLLASGRHKNLERWLAPLPAQCQKRWPWTVFWL 419 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 A + + L A+A +D + A R I+ P A A Sbjct: 420 A-GSRFPESIAQSRDLYAQALDLFQDQGDHRGMLLAWAGRMACLIHGQAPRPAVVSALEL 478 Query: 476 LE------ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 + ++R V + + ++ + A + + Sbjct: 479 FDTDLTTFYSLEKDEWTRAVVAAAVFLAKVLCAPEPETIRWGETALGFAERLQAKDLLIH 538 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 +G + + + L LP L + AR +EA Sbjct: 539 VCFGAVLYFLPRGENERLAGLITQVRFQCSVPALPALPAATLLATDMLGRMT-QAREEEA 597 Query: 590 EASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 A A G++++ + L C++ GDL+ A L+ ++ W Sbjct: 598 LALATQGLQLVRQSGVTLFEAFFLGYSAACAMNTGDLEAAERFLD---SMAKASLATRRW 654 Query: 649 ISNANKVR-VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL--LGEFE 705 + + G A A W+R E + AQI LG E Sbjct: 655 DRSLYCFLSARLSLLRGAYADAERWVRQVLDREEDEGPLGTLCLSLVGAAQIAFCLGWRE 714 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 AE L + AR + + G + + VL AL L R Sbjct: 715 QAEERLAQAGVLARQYQFTLAEWAAAMAQAYWALAEGDRDSCRAVLKPALALGRRNMLYV 774 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 801 V + QL ++ +E QR++R+ Sbjct: 775 TLVD----VPAQLAEVCVAALEEGMEVPYVQRLVRQ 806 >UniRef50_C0ZBC0 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZBC0_BREBN Length = 1068 Score = 313 bits (802), Expect = 2e-83, Method: Composition-based stats. Identities = 149/853 (17%), Positives = 324/853 (37%), Gaps = 34/853 (3%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG-WYS 63 SK++ P + + + R L KL ++ LI + AGYGKTT ++ + + W++ Sbjct: 9 SKITPPGQKPYVLRRPALAKKLRLLKYTQICLIHAGAGYGKTTSLATFLHDEALAASWFT 68 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAIC-ETMAQKRQYASLTSL-----FAQLFIELA 117 + +GD+ F L+ +V+Q +G + E + + + + SL E Sbjct: 69 IQDGDDALLAFVLCLVESVRQVHSGFGQVLKEQLKDITEQSPVPSLDSKVLVDWFVGECV 128 Query: 118 EWHSPLYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRDQ 175 + + LV+D + I N + + ++ P+ + LV+L+R+ P+ + L R + Sbjct: 129 QLQADHILVLDHFQRIENGCEVDQFVQRLAEALPQKVKLVILTRSRPKWSNLDLLSARGE 188 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 LE+ + L+FT +E++ F+ + + + R+ + GW AL+ + Sbjct: 189 CLELTTNDLSFTLEESEAFYSDQYDITLSEEDWGRVEEVALGWVMALRTFGEMVTRGQTV 248 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 S L L EV +D + FL+++A+L + ++ GE + Sbjct: 249 PDSL------RELSRLLHLLEVEVWTQLDAGMQRFLMEAAVLEQFDLEDCKQILGEGCIE 302 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 L E +R LFL D+ + +HPLF L + A + +++ AA + +G Sbjct: 303 HLL-EAQRCHLFLHVQADSH--YSFHPLFQRLLSSKLAANQATYV-HVNQKAAGWYRRKG 358 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 ++A ML + L + L +L L E + LP E L+ Q Sbjct: 359 DEAKAFRRLRLVEQWEMLGEWLCQASERLLQAGKLDFLYEWITLLPEHIKCEQHWLLFYQ 418 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 + + + Y + + + + ++ +A+V ++ AE L K A Sbjct: 419 GEVERYRCLYAKSFASYEQFLKQCEQKQDQIGLCRGLEGQARVHLDSVQGVRAEELLKRA 478 Query: 476 LEELPPGWFYSRIVA--TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 ++ LPP + + +L E+ +G+ ++ A ++++++ +Q + + Sbjct: 479 IQLLPPFEQENEMAPRLYRLLAEIYTNRGDAKQAAAWYERSQELEQQTE--------VEL 530 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 +S +LF G LQ++ + E +Q+ +H + + + + + +A Sbjct: 531 ESRLLFRTGRLQSSIQLLESKWQVEQGKHPPLTRSYRETSLLLSFVYALNGEWERGWEAA 590 Query: 594 RSGIEVLS-SYQPQQQLQCLAMLIQCSLARGDL--DNARSQLNRLENLLGNGKYHSDWIS 650 + I++ ++ P + +L L D R + ++ + Sbjct: 591 ETAIQLGRAAHSPFVEANGYVRKAHAALISQTLPTDEIRELYEKGLQIMEELQSTRGKSE 650 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR-NIARAQILLGEFEPAEI 709 + + Y + A R + E + +L R I A G+ E A Sbjct: 651 TLLGLTLFYAREKALDQALLYGNRGIQETEAMRDDWLGSLVRMAIGIAYAKYGKEEEAWA 710 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 + + + ++ L L+ L ++ + + AL L + + Sbjct: 711 IFIDCADRLSHCGDSYNVVICQLWLSFLAYRKKQWDLFVPAVTQALSLMKSGEY-QFLLQ 769 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPE 829 + Q + + + + + ++ + F + R+ Sbjct: 770 RPTLLTPHDVQQLMPILIEAERRKVSPDYVSQLLNDLGLQNVTFHPGYTLRIQTLGAFRV 829 Query: 830 LIRTSPLTQREWQ 842 + L+++ WQ Sbjct: 830 WLGERELSEKAWQ 842 >UniRef50_C5BYP8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BYP8_BEUC1 Length = 895 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 190/912 (20%), Positives = 332/912 (36%), Gaps = 73/912 (8%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGA-NNFRLALITSPAGYGKTTLISQWAAGKNDI 59 ++ K++ P R + T+ R RL A L A + ++ + +PAG+GK+T + WAA ++D+ Sbjct: 27 VVPRYKVTVPRRGEATIARPRLSAMLDDAVASRPVSHVAAPAGFGKSTAAAAWAADRSDV 86 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGH------CAICETMAQKRQYASLTSLFAQLF 113 W SLD D R ++AA+ A A+ R L + Sbjct: 87 AWLSLDPYDADPRRLYRGVLAAIATALADDELPAPLAAVLRPGVHPRDPEDAIDLLDGVL 146 Query: 114 IELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 L + PL LV+DD H + V +R + +++LSR+ L +L Sbjct: 147 EALDDLRRPLVLVVDDVHHVPPGVARPVVRAVLSAGLPTTNVLLLSRDASHLDGLDLDA- 205 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLI-------- 225 + L FT +E + A++ + D+ GW A+++ Sbjct: 206 ----TVTGADLGFTAEEIVT-LSGSYPPGLTQAQAVSLHDETRGWPAAVRMSLIDRPDRD 260 Query: 226 ALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALI 285 A R + + R + YL DEVL + A F+ ++ + +L Sbjct: 261 AAERRGTPATPATTPARAVAAHDEAFGAYLHDEVLGALPRAVAAFVRRATTSTVITASLA 320 Query: 286 TRVTGEENGQMRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEI 343 +TG ++G L R+GLFL + D + + +H LF ++ R R + E A ++ Sbjct: 321 IALTG-DDGARLLAATLRRGLFLTPLGRRDGEDVYRWHDLFASWCRSRLEHEDPALARDL 379 Query: 344 HRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWD 403 H AA W A+ P E++ HALAAGD+ D+L+ A + + L E +ALP Sbjct: 380 HGRAARFWGARHLP-ESVPHALAAGDSGAAVDLLVEGALEALLNGGAAELLELCEALPPT 438 Query: 404 SLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG 463 + ++ ++V +++ + R E +LL RA ++ D A + Sbjct: 439 A-RDDARVVAIRSVAARMSGRRDEAASLLERARAQLADHDAGDADGSHALAVAMLETFVA 497 Query: 464 NPDEAERLAKLALEELPPGWFYSRIVATSVLGE-VLHCKGELTRSLALMQQTEQMARQHD 522 P A A+ L R LG + + +L L+ + +A +H Sbjct: 498 GPSSAPDAAERLLASPAALHPAVRAGLLYHLGRRATRRQQDPRGALHLLDEAVSLAERHG 557 Query: 523 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 582 + AL S +++ L A + + Q L + Sbjct: 558 LDGVALASRAERASALVDAAEPVLAEQAITDVLERAEISGWAQDARLALLRLEAGVFAYW 617 Query: 583 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 642 D A+ + + + +A L A + + + Sbjct: 618 RDEFDVAQRH------FTLVTRARGDDEAVASLGSLYGALASIATGDAGGAAAAAQGISQ 671 Query: 643 KYHSDWISNANKV-RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 701 S + + + R+ + GD A+A + F + R Sbjct: 672 GLASLPLEAMHALLRLKTAEAAGDVASAVREADLIGRS--PCMPFAVVWQAEVFRV---A 726 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 G E A VL L + LL+ D ++ L +A + Sbjct: 727 GRAERARNVLASLRAVPVRAHVRVAAELTGALLDAA-----DGGDPLPQIVAGLHVAAPS 781 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 F ++ + L L+ T +F+ L Sbjct: 782 RFTRPYLERLPDLRPYLEALVHAGTD--------------------------HRDFLTGL 815 Query: 822 LNHPEV---PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKL 878 L P P LT RE ++L + S + +IA L V+ T+KTH R +Y+KL Sbjct: 816 LGTPAADGAPHRRSHWELTDRELEILDGLRSSLTAAEIARSLFVSVNTVKTHQRAVYRKL 875 Query: 879 GVAHRQDAVQHA 890 G +R++AV+ A Sbjct: 876 GARNRREAVRLA 887 >UniRef50_B0A6U3 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A6U3_9CLOT Length = 826 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 138/887 (15%), Positives = 309/887 (34%), Gaps = 94/887 (10%) Query: 13 LDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQE 72 + V E+L K+ N+ L ++ +P GYGKTT I + K +Y + + Sbjct: 9 TNEVYVNEKLTEKIDKINSHPLTVVEAPMGYGKTTAIKIYL-NKFHTNYYWQNIYTDSDI 67 Query: 73 RFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHL 132 F + + + + E + + L +L + + +++DDYHL Sbjct: 68 AFWQGFCRIISKIDSNVGSRLENIGLPKDSIKLEE-CIELINSIY-IKEEIAIILDDYHL 125 Query: 133 ITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAK 192 I N + E + ++ + L++++RN P + I L+++ + I L F + K Sbjct: 126 IDNKNLDELIYNLVKSMDNKIHLIIITRNKPDIEIEELQLKKLVNYITKNCLEFEKDDIK 185 Query: 193 QFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLS 252 +++ + + GW +A+ LI L+ + + Sbjct: 186 KYYKL-CGINLNTLNIDDVYKKSEGWISAIYLIMLNY----------IEYNTIEISEDIY 234 Query: 253 DYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMD 312 + + V D + + FLL+ + + VTG+EN + ++E+ + F+ + D Sbjct: 235 ELVEKLVYDPFEDKFKDFLLRLCVFDQFTLEQVKFVTGDENVDLLIKELTQVNAFV-KYD 293 Query: 313 DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALM 372 + + +H +F L ++ + + E+++ + + ++ + A D Sbjct: 294 KKNKVYLFHAIFRTCLLEKLKEKDDDYKKEVYKKGGLLFYKKRKYVLSMGYFYKARDYES 353 Query: 373 LRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYG----EV 428 + L+ + ++ P + +N +L+ A + + + Sbjct: 354 FLNTLVQDKGNSITGEIKDTFIRCMENCPNEFKQKNHLALLVYARRLFTYNEMDLFGKVC 413 Query: 429 NTLLARAEHE--IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS 486 + I D ++ + E + + N N +E L K A E + Sbjct: 414 GQFYENIAKDKNIDDKEKNQLLGEMKLILSFTKYN--NIEEMSNLHKEAYELMYKPSTIM 471 Query: 487 RIVATSVLGE------VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 +T G K +L L +M+ + H I ++E+ F Sbjct: 472 TNKSTWTFGSPSILYMYYREKDKLQEQLRIMKNAMPYYYKITDNHGKGADYIMEAEVCFN 531 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 600 QG + A +KA + ++ Sbjct: 532 QGDILNAEIALDKAMLMCDKYSGVLC---------------------------------- 557 Query: 601 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 L + ++ + RG + R+ ++ +E + H + + +R + Sbjct: 558 ---------CALFLKLRILIHRGKYEEFRTLMDEIEEKIYINDLH-MFSDTLDLIRAYIY 607 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE--PAEIVLEELNENA 718 +++ W+ E F N +++L+ + + + ++ A Sbjct: 608 SNLKEESKIPKWI-INGNFENTRLLFPTMPLVNFIYSKVLITKKDYIKVVALYDKSMAMA 666 Query: 719 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL 778 R + + + Y ++ ++ L AL++A F + L Sbjct: 667 RIFPNLLCEIFENMHIAIAYDNLSKRKESIEKLEKALEIAISDRLYMVFAENYTDIKNLL 726 Query: 779 RQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQ 838 ++ + E I Q +F F + E + L++ Sbjct: 727 DEIYEKGNFKEAIDEI------RILQKAYEEFLKFVKK------------EKSKVVELSE 768 Query: 839 REWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 RE +V L G++N +IA +L V+ T+KT ++ +++KL + RQ+ Sbjct: 769 RELEVANLAAQGFTNNEIAKKLFVSVNTVKTILKAVFKKLCIKSRQE 815 >UniRef50_Q0SA69 Probable ATP-dependent transcriptional regulator n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SA69_RHOSR Length = 798 Score = 310 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 144/694 (20%), Positives = 248/694 (35%), Gaps = 27/694 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI-- 59 L+ ++ + P V R LL +L+ L+ PAG GKT L +QWA + Sbjct: 28 LLAARFAVPAAPKILVRRPGLLDRLTAGTRGPATLVAGPAGAGKTVLAAQWAREHTALPP 87 Query: 60 -GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W +++ GD F +Y++ A+ + G +R L +L LA Sbjct: 88 PVWLTVEPGDA-PGLFWAYVLEALHR---GGVLPVGVGRPERAEEVDHPLLVRLADALAA 143 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 P LV+D + + P I S+ F + H L LV+ +R P L + R + E Sbjct: 144 SRQPAILVLDQFDAASAPEIAASLHFVVTHAAGGLRLVLTTRTEPLLPLHRYRAHGDITE 203 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I + L FT E + I A + + + +GWA L+L AL+ +++T Sbjct: 204 IRNADLMFTPAE-GELLLHSHGLEISRAGVALLAERTAGWAAGLRLSALAMQRSTDPEAF 262 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 A + + ++DYL+ EV A + LL + I ++ L +TG + L Sbjct: 263 IGAFAA--DRTTIADYLLSEVFAAQPPAAQELLLCACITDRIHPELADLLTGRRDADWTL 320 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 + R FL+R++ + W+ HPLF LR P + AA + G + Sbjct: 321 ARLARAHAFLERVEGSA-WYRLHPLFAEVLRAHLSQRYPGLEPRLRAQAARWFADTGRVT 379 Query: 359 EAIHHALAAGDALMLRDILLNHA--WSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +A+ A AA D L+++ L + + L ++ A+P D P L + A Sbjct: 380 DAVAQAAAADDWQFAAGQLVDNLAVGRLLTGLDTARLAQAFAAMPADLPGAAPAL--VDA 437 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIR----EDTMHAEFNALRAQVAINDGNPDEAERLA 472 L + L RA+ ++ + + L + A + +A A Sbjct: 438 ALRLADGDLTGCTAALTRADEFLRAGPVAPEPQLVRSMVGVLAGRAAGDLAATRQAATTA 497 Query: 473 KLALEELPP----GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 L +P + LG G L R+ ++ + + Sbjct: 498 DRLLHTVPQPLRGQHPEIPAMVLGGLGSAELGAGHLDRAEQILTDAVTASERPGTQQPLR 557 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 SL + + QG L+ A +A + + + + A + Sbjct: 558 DSLGSLALVELLQGRLRQALAHSRRALAVAERSAVPPDDLVGLSHLVLAGVAAEHDDRAA 617 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLI-QCSLARGDLDNARSQLNRLENLLGNGKYHSD 647 A IE A++ + + A GD A L E L + Sbjct: 618 AHTHLDLAIEPAGPRPAPMTTATAAVICSRLATADGDWRGALEILRTAETALVHP--PPQ 675 Query: 648 WISNANKVRVIYWQMT-GDKAAAANWLRHTAKPE 680 W ++ + + D AA L Sbjct: 676 WAADELVIAASCAHLAHADTRAALEVLDAAPSGR 709 >UniRef50_A1T5L2 Regulatory protein, LuxR n=2 Tax=Mycobacterium RepID=A1T5L2_MYCVP Length = 732 Score = 309 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 139/682 (20%), Positives = 257/682 (37%), Gaps = 24/682 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-AAGKNDIG 60 + + + RP D V R +L +L A + L ++++PAGYGKTT + W Sbjct: 10 IPAATIGRPRIADRVVQRPGVLRRLKAAGSGDLVVMSAPAGYGKTTAAALWDFEDDRPFA 69 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +D D+ ++ AV + T + + + A + + +++ E Sbjct: 70 WVRIDHLDDDPAHLLLHVATAVVRLTETDRTLLRYLRGPGRPAL--THLVPVVVQILEDC 127 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 PL LV+DD H ++ +++ I P T +L R++ + +A R++ ++E+ Sbjct: 128 GPLVLVLDDVHKLSAADAVTALQMLIDEAPATTTPALLGRHMLPVALARRRLQRSVVEVD 187 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 + L + +EA + P A + + D GWA + L A++ R T + Sbjct: 188 QEALRLSVEEAAEVLGSVSG-PHSDATVAAVVDLCEGWAAGVILTAMALRDGTALEALTR 246 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 R + + DY+V+EV+D +D T FL++SA+L + V G ++ LE Sbjct: 247 RN------NLVVDYVVEEVIDRLDGDTATFLVESAVLDRFTAEQLDTVLGRDDSARMLEM 300 Query: 301 I-ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + FL +D W+ YH LFG+ LR R + A E+ AA+ G Sbjct: 301 LYGSGNPFLIAIDHHRVWYRYHHLFGDVLRGRLRDLAPARFRELATRAADLLERDGDIDG 360 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ AL AGD ++ A L +L L L + E+P + +AWL Sbjct: 361 ALLQALDAGDRTRAAALVGREAVRLGFDGRAGVLARRLAMLDARTFAEHPDAAVARAWLG 420 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQV-----AINDGNPDEAERLAKL 474 + ++ L A A + A + + + Sbjct: 421 VTTADAELIHRSLMLATRSDHGQPLSDGTPSVKVAVALISSLVGAGGVNDVIRQADVVRA 480 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 A + L W+ AT + G +G++ R+ AL++ + + A + + Sbjct: 481 AGDRLVNPWW---GAATVMKGAAEAMRGQVARARALLESALPVIEDLPGFQAAALAHLAL 537 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---LDEAEA 591 ++ A E+A L+++ L + + A + A A Sbjct: 538 LDLAAGDDDGAVARS--EEARTLVDKYDLCDVVPMIVVYATSAVMAARVGDEVGARRAVA 595 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 + + + L + L +L + D + L E + Sbjct: 596 VSETLLGRLGHLSARTALLGHGLLAWTAAVIQDPELLGRHLGAAERACHREPDAVALVQR 655 Query: 652 ANKVRVIYWQMTGDKAAAANWL 673 ++V+ + T AA L Sbjct: 656 VDRVKAMAAGGTRPLTAAELRL 677 Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 64/425 (15%), Positives = 131/425 (30%), Gaps = 27/425 (6%) Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 + + L +L P F ++L G++ +L R + Sbjct: 327 DVLRGRLRDLAPARFRELATRA---ADLLERDGDIDGALLQALDAGDRTRAAALVGREAV 383 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 L + +++ + + P + + Sbjct: 384 RLGFDGR-----------AGVLARRLAMLDARTFAEHPDAAVARAWLGVTTADAELIHRS 432 Query: 590 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 A ++ LI + G +++ Q + + + + W Sbjct: 433 LMLATRSDHGQPLSDGTPSVKVAVALISSLVGAGGVNDVIRQADVVR--AAGDRLVNPWW 490 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI 709 A ++ M G A A L F ++A + G+ + A Sbjct: 491 GAATVMKGAAEAMRGQVARARALLESALPVIEDLPGFQAAALAHLALLDLAAGDDDGAVA 550 Query: 710 VLEELNENARSLRLMSD--LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 EE L + + + G + A+R + + L R G +S Sbjct: 551 RSEEARTLVDKYDLCDVVPMIVVYATSAVMAARVGDEVGARRAVAVSETLLGRLGHLS-- 608 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 A L + T ++ + R + R D + + ++ + Sbjct: 609 -----ARTALLGHGLLAWTAAVIQDPEL--LGRHLGAAERACHREPDAVALVQRVDRVKA 661 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 T PLT E ++L + S S +++A EL + T+K+ +Y+KLGV+ R +AV Sbjct: 662 MAAGGTRPLTAAELRLLPHLASHLSLQRVAEELVIGRETVKSQATAIYRKLGVSSRGEAV 721 Query: 888 QHAQQ 892 A++ Sbjct: 722 AEAKR 726 >UniRef50_B8FZ91 Transcriptional regulator domain protein n=8 Tax=Clostridiales RepID=B8FZ91_DESHD Length = 969 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 156/872 (17%), Positives = 306/872 (35%), Gaps = 59/872 (6%) Query: 9 RPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGD 68 RP + + R RLL K+ +L I + AGYGKTTL+ Q+A G++D+ W +LD D Sbjct: 5 RPKATEALLQRPRLLDKI-ALPGTQLTYIHADAGYGKTTLLLQYAKGRDDVVWMALDGKD 63 Query: 69 NQQERFASYLIAAV-QQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVI 127 + F +L +++ ++ + + + + L + L ++ Sbjct: 64 REPIFFLQHLESSLKEKLIQFEFHATDYIPFAGSDTFAAVVLSALLKAIGSSV--LTIIF 121 Query: 128 DDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFT 187 DD H+IT+ + + + +++ P NLTL++ SR+ + L++ +++E+ + L F Sbjct: 122 DDVHVITHHQLTDLLTEWVKSSPPNLTLIMASRHELWSSLFRLKIAGEVVELTKKDLCFN 181 Query: 188 HQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGIN 247 +EA++ + GW A+Q L+A N + Sbjct: 182 QEEAERLWGFF---------DEAAYSATEGWTLAIQSYRLAAEGNKEFSLARLDA----- 227 Query: 248 ASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLF 307 +S YL +E+ + TR FL ++ L + + ++ Q LEE+ + LF Sbjct: 228 DRDVSRYLFNEIFMGITEETRDFLKATSRLPELEVQGCNYLLNIKHSQKILEELMHRNLF 287 Query: 308 LQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAA 367 + R + YH LF NFL+Q + +H A +S G A +AL Sbjct: 288 ILRTS--TTSYRYHTLFRNFLQQNDEGRG---WEILH-KAKDSCYGSGDYGRAAEYALLV 341 Query: 368 GDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGE 427 D ++ L A F L+ L + P++ L++ + + + Sbjct: 342 EDEKIVHACLSAMAGEFFTKGSSRNLKRYFDFLEARHVELTPRVQLVKGIYLSDGGDFYQ 401 Query: 428 VNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSR 487 L ++K +D L A+V N + E+ L L + Sbjct: 402 AEKYLKVVMPQLKSDEQDLYILAMTHL-ARVKRNRASFPESTACLDSLLPLLEGAPMAAW 460 Query: 488 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTA 547 L +LT +LAL + W + + F +G + Sbjct: 461 YGVVIEKIHNLTLTSQLTEALALTIAMMNKCLVNGDLRIKGWFERYLTVVYFYKGDYKNC 520 Query: 548 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 607 + EK+ + E+ + + + +A + D+A + + + + Sbjct: 521 LQAYEKSLAIPQEEQDQLMRHGVGVYAAKA--YQIAGQEDKARPLLDAELYRMRQLGLHE 578 Query: 608 QLQCLAML--------IQCSLARG---DLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 + +L Q G D A LN E+ + + + Sbjct: 579 EFSINYLLYAETLNTAEQLKYYLGKAADFSAADRYLNMAEDYALLNRSTREHWLFVKIWK 638 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG-QWRNIARA-QILLGEFEPAEIVLEEL 714 ++ A F Q + +A A Q+ E + + Sbjct: 639 -DCAEIFKQPEKAEEITAGILTLIQDTTPFFQTVAYGRMANALQVHQKNREQSIEYYRKS 697 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 + + L +Y + G + A+ L+L+ + +++ Sbjct: 698 IAIGEEIGCYAYATLAYGKLASIYLEEGDEEQARSYTQRFLELSCQYDH-RYYIRFKPLF 756 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 A L+Q + +P+ + + + ++ L P R S Sbjct: 757 ADVLKQAAEAGIMPDYTR-----------ELLDYGGYASVRVYINTLGTFYIAPAHERKS 805 Query: 835 PL---TQREWQVLGLI---YSGYSNEQIAGEL 860 P+ TQ+ ++L + G S E+I +L Sbjct: 806 PIKIRTQKARELLAYLLEHREGVSKERIFDDL 837 >UniRef50_A8S041 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S041_9CLOT Length = 823 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 141/886 (15%), Positives = 282/886 (31%), Gaps = 104/886 (11%) Query: 13 LDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-----IGWYSLDEG 67 L+ + ERL L + + + +P GYGKTT ++ + + I S+ G Sbjct: 8 LNTIYISERLQESLRPISRCAMTTVVAPMGYGKTTAVNWYLGERAKAETLKIIRISIYSG 67 Query: 68 DNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVI 127 F + A A A+ L + + Y+ I Sbjct: 68 --NLAIFWKSVQEAFAHAGFPFLREYPC----PTDAAGGGLLVDDLCHVLAGETSCYIFI 121 Query: 128 DDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFT 187 DD+HL+T+ + P N+ L+V SR+ +R+ ++ +IG++QL Sbjct: 122 DDFHLLTDRRASLFLCMLANRLPINVHLIVASRDRFLPAAETVRLGAKVYQIGTEQLRLN 181 Query: 188 HQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGIN 247 H E + R + + A+ + GW +A+ L + S R + Sbjct: 182 HTEL-AVYAHRCGTALSEAQIESLLYSSEGWFSAVYLNLRTL---------SERGVLPSR 231 Query: 248 ASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLF 307 S + ++D + R FL + + VTG + L + Q F Sbjct: 232 DSDIYATFTAAMIDPLPEKQREFLAVMGLADEFTVEMAQCVTGNGDAGQILSVLTEQNAF 291 Query: 308 LQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAA 367 + + D G + +H + A + AI + Sbjct: 292 VTHLPD-GVTYRFHHMMKECAECCFLAMEAETQRLYWERFGLWYEQHRQYLHAIAAYRKS 350 Query: 368 GDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGE 427 + L ++ + A L + + ++L+ P ++L P +L+ M + + + Sbjct: 351 ENYDALLRVIRSDAGILLASLKPEDVLDALEKCPAETLKAYPFAILVLMRRMFTWRQIPK 410 Query: 428 VNTLLARAEHEIKDIRE------DTMHAEFNALRAQVAINDGNP------DEAERLAKLA 475 + L A I++ E + E + + + + ND + + ++++ A Sbjct: 411 MLELKALLLTAIEEHPELSEEERGNLLGECDLILSFLCYNDISAMSRLHRSASVQMSRPA 470 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 + G + + SVL GEL LA M + Sbjct: 471 ISIQNSGGWTFG--SPSVLMMFYRAPGELESELAEMDE---------------------- 506 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 + + H + +RA+ L+ R +A Sbjct: 507 ---------------CMPHYYKVTNHHGQGAET-----IMRAEALFCQGRFTDAHIELER 546 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 + C L D++ + R LL + + WI+ N Sbjct: 547 AYAQVKDNGQINMALCCDFLSWRLSLHTDVEQRYTFEERYAALLR--YHDASWINLWNAT 604 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA-RAQILLGEFEPAEIVLEEL 714 Y + G+ + + + I + + G + EL Sbjct: 605 SAYYHALRGETDSIPEIFSQHRLSDINMLAPGKPMMEMIENQVYLAQGAYVRVVGYSAEL 664 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 ++ + Y + G+ +A L AL A G + FV + + Sbjct: 665 LPVCEAMHYALVALHLRIQTAVAYEKLGKSEEAHAWLRKALSDAEPDGLVMPFVENYDIL 724 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 L + ++ + L ++ + R F Sbjct: 725 KPLLEREVKNDLLSKIIELGEAATARNAAGTRPAAF-----------------------D 761 Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 LT RE++++ L+ SN +IA +L ++ ++K ++ +Y KL + Sbjct: 762 VLTPREFEIVELMAQRLSNREIAEQLFLSEGSVKQYVNQIYSKLHI 807 >UniRef50_B8G4C3 Transcriptional activator domain protein n=2 Tax=Chloroflexus RepID=B8G4C3_CHLAD Length = 1163 Score = 304 bits (779), Expect = 9e-81, Method: Composition-based stats. Identities = 168/794 (21%), Positives = 290/794 (36%), Gaps = 42/794 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KN 57 ++P K++ P ++R L A L+ + ++ +PAGYGKTTL++QWA Sbjct: 17 ILPLKITPPPVRREEILRRDLQALLTEVRLLPVTVVVAPAGYGKTTLLAQWADQLTHTGA 76 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATN--GHCAICETMAQKRQYASLTSLFAQLFIE 115 + W D D + +YLIAA+++ G A+ + + + L + Sbjct: 77 QVAWLGFDANDQEPALLLTYLIAAIRRLLPTAGEQALRLLQSLSSLKHNWPLVAGALLSD 136 Query: 116 L-AEWHSPLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRV 172 + E SP L++DD HL++ P+ E + + +R P NL +V+ SR + LR Sbjct: 137 VQRELQSPAILMLDDVHLVSEGPITTELLGYLLRAAPPNLHIVMASRRPLTFTPLPRLRA 196 Query: 173 RDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQN 232 LLE+G+ L EA + R+ + E + + GW ++QL + + Sbjct: 197 EGGLLEVGASDLLLQRDEAVELL-ARVGVVLPDDELDLLLERTGGWMLSVQLAVRTLARQ 255 Query: 233 THSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEE 292 T + + N L +YL EVL + L+ +A+ +L+ G + Sbjct: 256 TPEQRRRYLQGLATNQHDLFEYLASEVLGMLPSHLVDRLICTALFGQAIPSLLDEALGVD 315 Query: 293 NGQMRLEEIERQGLFLQRMDD---TGEWFCYHPLFGNFLRQR-CQWELAAELPEIHRAAA 348 + LE+ GL L D F +HPL+ L R + E+H Sbjct: 316 DSAQLLEQAIDFGLPLTVETDGTSGERVFRFHPLWQRLLADRALLRFDRVFVRELHERFG 375 Query: 349 ESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLEN 408 + A+ H AA + + L +AW L + S+ L ++ LP D + Sbjct: 376 MTLARHDQIESALRHLAAAENPAAIAYALREYAWPLIDSSQRESLRNWIERLPPDVRERD 435 Query: 409 PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALR--AQVAINDGNPD 466 P+L+ + W + +R L+A+A + + E ALR A + +P Sbjct: 436 PELLHMYGWSFFNTNR-ERALQLIAQAAEQYR--LAGATDQEMRALRDMAVLLFWADSPA 492 Query: 467 EAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 525 E R+ + +E +SR A +L+ +G +L + + E R Sbjct: 493 EFARVCRRVIEAATRINDAWSRGAALVGFMALLYSQGRFRAALRVGRWAE---RWPLSVL 549 Query: 526 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 585 + + +S I QG+ A A L + L L++ A + Sbjct: 550 WQWLLAVLRSSIYVQQGYPAEALTAIRAALDLPRIDRNDMLRQSLLLLQGLALYQQGQS- 608 Query: 586 LDEAEASARSGIEVLSSYQPQQQLQC--LAMLIQCSLARGDLDNARSQLNRLENLLGNGK 643 + A + L+ Y P L + +L + D + L R + Sbjct: 609 -EVALDQVQECYFRLNDYVPGSVLTGNAVLILALLLIEHERFDEVATYLQRARQIASQLD 667 Query: 644 -----YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP--EFANNHFLQGQWRNIAR 696 + +R A + LR + P A LQ + A Sbjct: 668 DRLLGMRVRVVEIYAALRSQSPSAAAQAVAFWHKLREYSDPNTPVARESDLQSFQVHDAW 727 Query: 697 AQILL-------GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN-QLYWQAGRKSDAQ 748 Q LL GE E A + + L E R L ++ Q Sbjct: 728 MQTLLLIVMGEGGETEQALAMADSLLEFMVRRRDGLFQAVIHLYRAYLMFQQQPHVEAVA 787 Query: 749 RVLLDALKLANRTG 762 + A + +R G Sbjct: 788 DDIRIACTICDRAG 801 >UniRef50_Q1NQI1 Transcriptional regulatory protein-like:transcriptional activator domain n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NQI1_9DELT Length = 1085 Score = 303 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 139/828 (16%), Positives = 281/828 (33%), Gaps = 37/828 (4%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNF-RLALITSPAGYGKTTLISQWAAGKN-DIGWY 62 +K++ P D +VRERL L + +A ++PAG GKT+L + + A + WY Sbjct: 8 AKINPP-GADDILVRERLFTLLDKGFSRQPVAWFSAPAGSGKTSLATSYLAARRLSCLWY 66 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP 122 +D+ D F YL A ++A + + ++ + + F EL P Sbjct: 67 QVDQRDGDPASFFYYLGLAGKKAAPRRRRPLPLLTPEH-LPNIPTFTLRFFEELYRRVQP 125 Query: 123 -------LYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRD 174 +V+D++ + + + + PE + +++SR P +LR R+ Sbjct: 126 GSPTKGEFVIVLDNFQDAPPASPLADIVSRGLSIMPEGVRAIIISRAGPPPAFVDLRARN 185 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 ++ +G ++ F E + R + I + + +GWA L L S + Sbjct: 186 RVCFLGWDEIRFNRAETRDLIKAREPAKISRQATDELYAATNGWAAGLILFLESLARGGT 245 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 + G + D+ E+L+ D ++FLLK+A M A+ ++T + Sbjct: 246 DSAPG----NGFAREPIFDFFAREILEKSDEQLQNFLLKTAFFPKMTAAMAAKLTRNPDA 301 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 L + + F Q++ T + YH LF FL AA ++ AA Sbjct: 302 DRILSGLHKNHFFTQKLTHTKPIYQYHALFREFLMA-RAEAAAAAPEDLRHKAAAILEQA 360 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G+ EA + D L ++L A L +++ + + LP + + + L Sbjct: 361 GYYEEAAEIYCSLHDYDGLTRLILTQAPVLAADGRNAVITQWISCLPGEIVQASAWLSYW 420 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHA-EFNALRAQVAIND---GNPDEAER 470 Q + + L RA K R+ + A+ +A D Sbjct: 421 QG-VAGFCADVKQSQELFERAFALFKKERDPAGIFLSWAAVVETIAFAMEDLNQFDHWVA 479 Query: 471 LAKLALEE---LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 527 + + + +P +R+ + V ++ ++ + + + Sbjct: 480 IFDSLMRQWKSIPSPEIEARVASQFVAAVIMRFIPHRDFAV-WRDKAIKQPDARPRFR-- 536 Query: 528 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 ++ + G + A L L + L ++ Sbjct: 537 --AMFHLAMYHLQLGDVVGAKLYIRSMQSLAKAADAAPLDLIS-LKLAEVTFHGRTGAIE 593 Query: 588 EAEASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 646 A ++R G+E + L L Q + GDL + + ++ L + S Sbjct: 594 LARRASREGLETAARSGVHLLDFMILGNLAQPEMQYGDLATSIEHMRKMGALAE--ERPS 651 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 706 + + + + G+ AA + K + W ++ +A + + E Sbjct: 652 FDRAFYEHLASLQELILGNLRQAAVHVDLALKFIARAGFPVGQIWIHLLKALVSCEQGEY 711 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 + +LL+ A L L +A GF Sbjct: 712 ELAEAHIDKAAGIDIGTRGSTEFDLLMTRAYVDLARGGDQYPAALRRGLAVAREEGFWDS 771 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFD 814 F + L +L + ++E + +++ + H + Sbjct: 772 FF---PWSMKFLGRLCLVALEHDIETGYVRELIKRQGYTPENPPVHIE 816 >UniRef50_C7H4E9 Transcriptional regulator, LuxR family (Fragment) n=2 Tax=Ruminococcaceae RepID=C7H4E9_9FIRM Length = 804 Score = 303 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 146/864 (16%), Positives = 277/864 (32%), Gaps = 73/864 (8%) Query: 13 LDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK----NDIGWYSLDEGD 68 L+ + ER+ L + L + +P GYGKTT I+ + + N + ++ Sbjct: 6 LNAIYISERVQETLRPVSVSALTAVVAPMGYGKTTAINWFLNQRKQTENAVI-LRVNIYS 64 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVID 128 + + F +VQ A + + AS + + P YL +D Sbjct: 65 DNRSIFW----KSVQNAFAAAGLTALAGCEYPEDASSAAQLMDDLCTVLAGDRPCYLFLD 120 Query: 129 DYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTH 188 D+HL+ + + + PEN+ L+V SRN LR+ +L IG +QL H Sbjct: 121 DFHLLKDEKAAKFLCGLANRLPENVHLIVASRNNFLPKEEILRLGHRLHRIGKEQLRLNH 180 Query: 189 QEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINA 248 E + R + A+ + GW +A+ L S + R + Sbjct: 181 TELAHYAH-RCGMDLTEAQVDSLLRSCEGWFSAIYLNLHSL---------AERGILLSED 230 Query: 249 SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFL 308 + + +L+N+ + FL + + VT + L + Q F+ Sbjct: 231 ADIYSMFAAAMLENLPPKMQEFLAMMGLADEFTVEMAQAVTEMPDAAEILRTLTEQNAFV 290 Query: 309 QRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAG 368 R+ D G+ F +H + + + + + A+ A+ A G Sbjct: 291 TRLPD-GKTFRFHHMLKECAERLFARLAPEKQDACRKRYGAWYEAKLQYLHALTAYEACG 349 Query: 369 DALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEV 428 D ++ A L + L E L P ++L ++P +L+ M + + ++ Sbjct: 350 DYDAALQVIERDAGILLTSLGSAELLERLGRCPVETLKQHPFAILVLMRCMFNWRQIPKM 409 Query: 429 NTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI 488 L + + H E++ ++ L + + + Y+ I Sbjct: 410 MELKELLLTTVAE------HPEWS-----------QEEKGNLLGEC--DLILSFLMYNDI 450 Query: 489 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 548 A S L A Q + + + + S G L Sbjct: 451 SAMSRLHRS-----------ASAQMSHPASSIQNSGGWTFGSPSVLMMFHRQPGQLDREL 499 Query: 549 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 608 ++ + E ++R A L + D+A+ + Sbjct: 500 AEMDECMPHYYKITNGHGMGAETIMRAEADL--QQGQFDDAQILLERAYAQIEGNGQTNM 557 Query: 609 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 668 C L G R E LL W + + + Y+ + G Sbjct: 558 TLCCDFLAWRLSLCGPYTPRVPLEVRREELLRQHN--MAWRNLFHAICAYYYALRGQTDG 615 Query: 669 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE--LNENARSLRLMSD 726 + N + Q+ L + E A ++ L +L Sbjct: 616 IPEVY-AAHRMNTVNTLAPGKPMIGLIENQVYLAQGEWARVLGRGPGLLAMCEALHYDLV 674 Query: 727 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNT 786 + + + GR+ + + +L AL A GF+ F + L Sbjct: 675 ALHLRIQMAAACARLGRQDEGRSLLEQALAQAALDGFVVPFAENFRDLEPLLEAAQ---- 730 Query: 787 LPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGL 846 E A R + + + + L +PE + LT+RE + L Sbjct: 731 --EGPHANAVRCILALGAAQQERC--------RALNRSEALPEA--AARLTERELALARL 778 Query: 847 IYSGYSNEQIAGELEVAATTIKTH 870 I +N++IA L ++ T+K + Sbjct: 779 IADRCTNKEIAARLFLSEGTVKQY 802 >UniRef50_A5V421 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V421_SPHWW Length = 890 Score = 302 bits (773), Expect = 4e-80, Method: Composition-based stats. Identities = 154/913 (16%), Positives = 301/913 (32%), Gaps = 58/913 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI--- 59 + S+L +L V R+RLLA L RL I +P G GKTT++ Q A Sbjct: 11 LRSRLRPRPQLVPLVERDRLLAWLDADVPSRLVWIGAPPGAGKTTMMEQAYARVGSCGGF 70 Query: 60 -GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W SL + + F++ LI AV ++ + + A + F +L Sbjct: 71 RAWLSLTDQEATTAAFSAALIHAVA------------LSARDEPAEPGRDLPEAFSQLC- 117 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 ++L +DD+ +R + P +T+VV SR L A L +R ++ Sbjct: 118 GGRHIWLFLDDWDRAECAETEAVLRLILAEYPGGITVVVGSRTASPLTSAALLMRGGIIR 177 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 L FT E + A + I + GW +QL L Q Sbjct: 178 FDFDNLCFTRGEIA----GCAGADPSAGDLDAIWTETHGWPALVQLARLGMMQRRSFGGS 233 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + ++DY+ +E+L + R ++ A+ ++ L+ + + + Sbjct: 234 GDDAFPD---AMIADYVSEEILGALVSPERQAMICGALFDELSADLLDIILERSDSMESI 290 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHR--AAAESWMAQGF 356 + + R+ L + + W+ P+ +R+R + + + A + + G Sbjct: 291 DALRRRHL-IAEAGSSANWYRMMPVLAAHVRRR--RFAPSRAIPVRQIEAVCDFLVRFGR 347 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +A+ L AG M + A L + + PQL L Sbjct: 348 HDDAVRFVLRAGAPEMAAALFERGAGYLLTMRWGFETIRLFREFDIPGIERFPQLALALI 407 Query: 417 WLMQSQHRYGEVNTLLARA---EHEIKDIREDTMHAEFNALRAQVAINDGN--PDEAERL 471 +L + R R + + + + + F+ + + + + P Sbjct: 408 YLDLQEERVARARAAFERLRGEDAALARVDDANLRLAFSVVEGLLCLVEDREMPVRVTAA 467 Query: 472 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 + AL+E G R VL G+ L L ++ D + + + Sbjct: 468 METALDENSIGPVALRSALC-VLVSHYLDTGDYAEGL-LRASVALLSAGADAPYVSDYLD 525 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQ--LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + S A G + A + + E+ + + + AQ+ + ++ A Sbjct: 526 LCLSLANGALGNMAEAEAHARSVERRNAVGRGFPEEAMVTAYASFLLAQIRYETGDIEGA 585 Query: 590 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD--LDNARSQLNRLENLLGNGKYHSD 647 +R L A SL R ++ A L+ + + Sbjct: 586 WEISRDSAPALPERHGWLPAYEAATPTVASLLRRKEGIEPALHFLHDQQGAARRNGF-DR 644 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA----RAQILLGE 703 A + + G A + + + +A I L Sbjct: 645 LELVATASEMHQLALAGRIEEARKIAEQPTVRRILSGAEIDSRASRLAPGLFAGAIRLAL 704 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 +++ +S R + L L S A A Sbjct: 705 CGGDLARAKQMLGTLKSFDRHGANERLQIPLMTLEASLMHLSGA----------AEPC-- 752 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 ++ G + + R + L +IL +++ + A + + Sbjct: 753 VAICGDIGRRLTRSGRWTYLADEPRALVTPLLAQILPKLDAVASGQTAFVVQLLEGQCKG 812 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 L+ RE +VL ++ GYS +++A +L + +T+K + + L+ KL R Sbjct: 813 VARKISHGGPH-LSPREREVLEMLADGYSAKEMANQLGLMESTLKGYRKALFSKLNAHTR 871 Query: 884 QDAVQHAQQLLKM 896 A++ A++L + Sbjct: 872 SRALRAARELNLI 884 >UniRef50_C0QDB1 MalT n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDB1_DESAH Length = 1102 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 144/856 (16%), Positives = 301/856 (35%), Gaps = 50/856 (5%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYSLDEGDN 69 ++ V R RLL L+ + R+ L+T A GK+TL++ + ++ D W L + Sbjct: 9 PQVSDLVPRTRLLNLLADHGHCRIFLVTGQAAQGKSTLVASFLDREHQDCLWCHLTPEAS 68 Query: 70 QQERFASYLIAAV---------QQATNGHCAICETMAQKRQYASLTSL--FAQLFIELAE 118 +I + +Q G + + Q L L + + Sbjct: 69 DHTTLFDIIINGIHQLFQQRSDRQTDKGRKSQNIQIPQTTLGIRQDLLRQIETLSLIFEQ 128 Query: 119 WHSPLYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 PL LV+DD + + + + + P + ++SR LP L + ++ L Sbjct: 129 IDFPLNLVLDDMENLDDRGSAFALIEQLLANPPHGIRFFLVSRTLPPLNLPQFKINQTLF 188 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + ++ LAFT E FF + + + +I + GWA L L++ S R+ Sbjct: 189 ALNNEDLAFTLDETLAFFRQK--DTMIPEDIEKIFNITDGWAGGLVLVSESLRR-----T 241 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 ++ L G +S Y E+ +++ L TRHFL+++AI ++ ++ + Sbjct: 242 QNLENLPGHLSSEAFSYFSLEIYNSLPLETRHFLMQTAIFDILDTRILKDFFTNIDAVSV 301 Query: 298 LEEIERQGLFLQRMDDTGEW--FCYHPLFGNFLRQRCQWEL-AAELPEIHRAAAESWMAQ 354 L E+E++ LF+Q+++ W F Y+ LF +FL+ L E +++ A + A Sbjct: 302 LNELEQRNLFIQKIEPDDRWPVFKYNHLFRDFLKADLLKHLNPGEYEALNQKAGRLFWAN 361 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 +A+ ++A + +I+ + L E++ ALP + + +P L+ Sbjct: 362 KSHEQALGAFISAKAFSEIANIIRIKGTDYVITGRTAGLAEAIYALPKEMVDHDPWLLFF 421 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA----ER 470 + + + + RA + A + A+ P Sbjct: 422 KTLTQRIKGGRKNIQAF-GRALAGFTKTADTRGILLCTAYLIEAAVFVREPSPVILKWIN 480 Query: 471 LAKLAL--EELPPGWFYSRIVATSVLGEVLHC-KGELTRSLALMQQTEQMARQHDVWHYA 527 + L + + ++R + +G G++ + ++ + +AR Sbjct: 481 QGEACLRSRQGEHRYTWARTLLWQQIGLGYIAGNGDIPKGISACRNAILLARHIKNPDLL 540 Query: 528 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 L + + + G A + EK + E + + + I + Sbjct: 541 LNASVVLTLGFVQSGDFSRARKMLEKIQAMTEEGRHPEYRALKNITNI--DYALKKGEFE 598 Query: 588 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD-LDNARSQLNRLENLLGNGKYHS 646 A + + L D A N L + + + Sbjct: 599 PARVLLEKTEADVEKFGLIFLYPGLVEARAIYFVSTDQFTQALQTANHLSDF-SILEGND 657 Query: 647 DWISNANKVRVIYWQMTGD----KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 702 ++ A+++R + + G K A ++ + + H + + A L Sbjct: 658 FYLGIAHRIRAMNFLKCGKYALSKKEALKAVKALGESRRGDIHLFMARQIH-GFALFHLK 716 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 EF A+ LE E + +L + + + L L+ A Sbjct: 717 EFSAAQRELEPTLEYFHHITSDLLFCETSFILGLAAFALNQAQRGEAHLGAGLQKAVENH 776 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 + +++ + +AQ L + + +P L L Q + V+ L Sbjct: 777 YSYFPLVDLKTLAQVLVRASMIKPVPTLPSGMMSTKLSVPLQ----------QAIVDYLD 826 Query: 823 NHPEVPELIRTSPLTQ 838 + + ++ R L+ Sbjct: 827 SAEKKDKIKRIDQLSP 842 >UniRef50_C5BYR9 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BYR9_BEUC1 Length = 840 Score = 298 bits (763), Expect = 6e-79, Method: Composition-based stats. Identities = 192/891 (21%), Positives = 314/891 (35%), Gaps = 75/891 (8%) Query: 12 RLDHTVVRERLLAKLSGANNF-RLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQ 70 R + R RL A L A + L+++PAGYGKTTL+ WA G+ + W +D + Sbjct: 2 RGGTAIDRPRLGAALDDAVTRAPVTLVSAPAGYGKTTLVRGWAVGRAGVAWLDVDASVAR 61 Query: 71 QERFASYLIAAV----QQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 + ++V + G + A + L L L + P+ LV Sbjct: 62 PLALFRAVASSVAGQVEPDAAGRLSQLARDAAREGSVPWADLLDGLVAALDDTCDPVVLV 121 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +DD H + + + +R + L LV+L+R+ P L + LR+ L EI + +LA Sbjct: 122 LDDAHRLGLDEPN-VLAHLVRIRHPALRLVLLARHDPPLALHRLRLDGALAEIRADELAL 180 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 T E + ++ + GW A++L AL+ + +A G Sbjct: 181 TTDEVAALLHAE-ALTPSEDDARALGRATQGWPAAVRLAALALSGRAGTREITAPAEEG- 238 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 L YL ++VLD + F+L + + L + G ++G L E + Sbjct: 239 --ETLVGYLSEQVLDLLPDDVAAFVLDATTSDRVTGPLAASLVG-DDGARLLGECVHLAV 295 Query: 307 FLQRMDDTGEW--FCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHA 364 FL G+ + + +F +R + A ++H AA W P A+ HA Sbjct: 296 FLDTDGSVGDDPAYRWQSVFARHVRALRRRTDPARSRDLHTRAARYWAPH-DPRSAVEHA 354 Query: 365 LAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 +A D + I+++ +W L EL L + L S L+L++A + Sbjct: 355 VAGSDVDLAARIVIDRSWELMAAGELDTLSD-LAGASAASDRHRTDLLLIRAAGAYAGAD 413 Query: 425 YGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF 484 + LLA E + AL VA+ D+A R A L Sbjct: 414 LATGDALLAWVPRETAAVVP-------RALVELVAVPARPDDDAVRRASELLAGPVHLDP 466 Query: 485 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 544 +R LG + L+++ E+ A + L + ++S + A Sbjct: 467 ATRAALLLHLGRARGGTDPDGAAAELLREAERAAATAGLPVIELAAAAERSLAMAASAPG 526 Query: 545 QT---AWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 A E+A + + P H A+ L A+ R D A + + Sbjct: 527 HADLAAVAAVERATRSAHGSASFLAPAH------LARGLHAFWRDDLGLARELLTLARDA 580 Query: 602 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 661 S + A+L + +GD + S W + V Sbjct: 581 SARDATHAVAAAVLQMTADLQGD------------GAALSSGVGSGWPTLDTLVHAHRLA 628 Query: 662 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 721 GD AA + +R + G A + Sbjct: 629 TKGDLGAAVHTVREMPDGPRLPI------VSVWEAEYLRRGGLADAASRALRSAQTPEGG 682 Query: 722 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQL 781 L +LL AGR SDA R L A+ A G I F+ +A L Sbjct: 683 HLAVAAGLTWVLLAL---DAGRPSDAHRGLELAITRAASIGSIRPFLERAHDLAAPLAAH 739 Query: 782 IQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREW 841 + T E + E+ A P LT+RE Sbjct: 740 LTRGTAHE-------AFVVEVLARAEATGA----------------PRPATPWDLTERER 776 Query: 842 QVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 VL + S + +IA L + T+KTH R +Y+KLG R++A++ A+ Sbjct: 777 LVLSFLRSSMTAAEIAVSLSITLNTVKTHQRAIYRKLGATGRREALRLAES 827 >UniRef50_Q3A891 ATP-dependent transcriptional regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A891_PELCD Length = 977 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 159/868 (18%), Positives = 284/868 (32%), Gaps = 29/868 (3%) Query: 6 KLSRPVR-LDHTVVRERLLAKLSGANNFRL--ALITSPAGYGKTTLISQWA-AGKNDIGW 61 K P + R+RL+ +L R+ L+ + AG GKTT+I Q+ K W Sbjct: 15 KFYPPQVDTPRFLCRDRLVDRLLREGGARIPDILLEAQAGQGKTTVIKQFLDRSKTAFVW 74 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSL---FAQLFIELAE 118 Y + D F + + + + +L L L +L Sbjct: 75 YQVGAEDADPGFFLTAIATCIYARFPECPSAKTAQILSCSDFALFDLQKRVDLLLNDLCA 134 Query: 119 -WHSPLYLVIDDYHLITNPVI-HESMRFFIRHQPENLTLVVLSRNLPQLGIANLR-VRDQ 175 LY+V DD H + + + L ++ SR L A L Q Sbjct: 135 CLTDDLYMVFDDLHYLLDHEFSLALLSHLFETASPRLHFILSSRECLPLNDALLSDGNRQ 194 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 L +G++ LAF E FF + + + GW + L+ L Q + Sbjct: 195 WLRLGNRDLAFDETEITDFFYRIHHLDVPSDTIRTVARTTDGWVMGISLLGLQLAQQEGA 254 Query: 236 AHKSAR-RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 A A G + DY E+ + LL ++L + AL +TGE Sbjct: 255 AGFPALVNCRGEGTRAILDYFRREIFAPLPQRLHRPLLVLSLLEEIPVALAVELTGEVEI 314 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMA 353 + E+ R +FL+ +D F H LF FLR+R L+ + + I++ A + + Sbjct: 315 GVDFCELARSNVFLRPLDPDRTEFGLHHLFQQFLRERATVALSPQAIRRIYQRAGQFCLK 374 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 + ++A+ + L AGD + L ++ ++ + L L+ +P L Sbjct: 375 REDIAQALRYLLQAGDYAAVESALQDYGMDFLATNQTATLAAILQQIPQADLSGQGWSCF 434 Query: 414 LQAWLMQSQHRYGEVNTLLARA----EHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 A LL +A D+ E A ++ + +E Sbjct: 435 YLALAYMDSA-PSLALPLLKQALVIFIARQNDLGELLGLAHMISIHITTTGHYREGEEML 493 Query: 470 RLAKLALEELPPG-WFYSRIVATSVLGEVLHC-KGELTRSLALMQQTEQMARQHDVWHYA 527 A+ + G I+ L ++ + +ARQ + ++ Sbjct: 494 FRAEQLFARVGGGLDVAMTILVARSLAMGYCIFLADVDEATRFASLALSLARQEQLANFE 553 Query: 528 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 L+ I G A E+A + + + + L+ Sbjct: 554 AAMLMVMGYIHIFAGHTVLARMYMEQAAPCVQRAEVGAFNSLS-IRMMLFNFLYIEGDFA 612 Query: 588 EAEASARSGIEVLSSYQPQQQLQ---CLAMLIQCSLARGDLDNARSQLNRL--ENLLGNG 642 +EVL + Q + C + ++ +G +A + N+ + + Sbjct: 613 NYFEQKNQLVEVLGNAMFSQSIAAPFCTIWEMDIAINQGRFTDALALANQALGQQPPLSP 672 Query: 643 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 702 S + + V + Q AA + +F+ + + G Sbjct: 673 HLRSQVLQLQSVVLGLLDQPDRAWRAAEQSQQLRELS--GGRYFVTLNQLMVGLSCFHCG 730 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 PA L + E AR + LL +Y G ++ A + + L L R Sbjct: 731 RPVPALQRLSDGIEAARQMPTEYLQACGLLHRAAVYLALGEQTLAGQDIAQGLGLMRRNA 790 Query: 763 FISHFVI-EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 + HF AM + L + + + A L A D + L Sbjct: 791 Y-RHFWGWAPAAMQKILSFAVAHRIETDYARELAAERLGIALSEDGSAIALLDIRTLGGL 849 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYS 849 E L+ LT + ++L L+ S Sbjct: 850 HILLEGKPLLAAEALTPLQRELLCLLVS 877 >UniRef50_Q2SH33 Probable regulatory protein, luxR family n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SH33_HAHCH Length = 896 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 171/922 (18%), Positives = 312/922 (33%), Gaps = 73/922 (7%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIGW 61 + K S P+ + R RL KL A ++ +T+PAG+GKTTL+ WAA K + W Sbjct: 7 LKGKFSFPLASQIVISRSRLTRKLDAARQAQIHCLTAPAGFGKTTLMQDWAAPQKGRVIW 66 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSL----FAQLFIELA 117 ++ + DN+ R L+AA A G E + + + A+L Sbjct: 67 FTAERSDNRLLRLGGGLLAAFANAGYGFLGCKEELGLLNEPSGAAHWSRLFIAELETAAR 126 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + L LV+D+ HL+ P + +R P L +LSRN + +++ Sbjct: 127 RTGASLTLVLDNLHLLDAPEAIALLSCLVRDLPAPHRLCLLSRNPLAPALFASTSWNRVQ 186 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIE-----------AAESSRICDDVSGWATALQLIA 226 + + +LAFT +E KQ+ + + + S + GW Sbjct: 187 HLNADELAFTLEEGKQYLRALQAEGLLGRYAAPGSPGMQTQLSELWRQTDGWPI---FFC 243 Query: 227 LSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDL---ATRHFLLKSAILRSMNDA 283 A + + A + Y+ ++V+ + L + L + A + N Sbjct: 244 AMAHRMANRNTPFAAKEELNTLPDFHRYMEEQVMQPLQLVQKDMQTRLRELAPISEFNRD 303 Query: 284 LITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEI 343 L+++ ++ + + ++ TG+ +C LRQ E + Sbjct: 304 LLSQCLLPGESPALIQAMIHYTGLIVKVAQTGDEYCLRRPLREHLRQDATST--TEASAL 361 Query: 344 HRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWD 403 A +A AI + G +L SL + + + + L A+P Sbjct: 362 FNKAFRWRLANNQGRAAITLCIDNGYWRAAVHLLEKLYPSLVSAGCWTQVVQWLAAVPAH 421 Query: 404 SLLENPQLVLLQAWLMQSQH-------RYGEVNTLLARAEHEIKDIREDTMHAEFNALRA 456 + + P L +L + + + TLL+ A+ + L+ Sbjct: 422 IVGQRPLLQMLLGRKALFESAPASALVHFKQAQTLLSSAQELDHPDGVYDASSRAKWLQE 481 Query: 457 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 516 A+ +L E +R L + +G L + + + + Sbjct: 482 ASALIASTQALYVTGHDQSLAEQDSSCLLTR--YHQGLHALH--QGRLHETRKRLNEVME 537 Query: 517 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 576 A D + + + G + I Sbjct: 538 AA-LADDPGMLTQVIPVLGWLHYLTGETDLWRSGLASLRERIAPGCDLSHGFAWTSASTL 596 Query: 577 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 636 LL + D + + + + + A ++ D A L E Sbjct: 597 FGLLENASTDDVKQGLQDASVLHGLCAPVELRFNLAAAQALLAIREARWDEAGEALLEAE 656 Query: 637 NLLGN-GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 695 L + + + ++ G + A + L+ H+ Q + Sbjct: 657 VLQHSIPDPVRRTLFSLPALKAQRLLAQGGEREALHLLQA------WGGHYDQACFATQ- 709 Query: 696 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL-------NQLYWQAGRKSDAQ 748 Q++L E A EE E AR +++ ++ R LLL + GR+ AQ Sbjct: 710 HEQLILSEILFALNRPEESLEPARQVKVWAEQGRCGLLLTRALAIEALALQKLGREEKAQ 769 Query: 749 RVLLDALKLANRTGFISHFVI-EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHR 807 +V DAL + T + V + M L Q P + ++I+Q Sbjct: 770 QVFHDALHVGRMTSSLHSLVRKDAPEMKPLLSAAKQQGRYPAYVGRLIEHYGQDIDQDDD 829 Query: 808 HKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTI 867 + L++RE QVL L+ +G SN +IA L + T+ Sbjct: 830 DS---------------------ANLAALSKREKQVLDLLVTGMSNPEIADALCRSLGTV 868 Query: 868 KTHIRNLYQKLGVAHRQDAVQH 889 K H+ N+Y+KLG A+R A+ Sbjct: 869 KIHVHNIYRKLGAANRVAAINK 890 >UniRef50_C1TPX1 ATP-dependent transcriptional regulator n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TPX1_9BACT Length = 832 Score = 296 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 163/879 (18%), Positives = 303/879 (34%), Gaps = 86/879 (9%) Query: 21 RLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN----DIGWYSLDEGDNQQERFAS 76 RL KL +FR I +P+G GKTT I + N I W+ E + Sbjct: 18 RLKDKLRKIRDFRTTFIEAPSGAGKTTAIRDFFNCPNMNPPSIRWFVASEE--PGTSGWT 75 Query: 77 YLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNP 136 + + + + + AQ ++L YL+ D++ + Sbjct: 76 RFCHVLGEIDPYVGSRLLHLGFPVEDNQGE--VAQALVDLV-CDDETYLICDNFQFVHKN 132 Query: 137 VIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFD 196 + R + H L +V++++ L G+A L +L + ++ L T +E ++ Sbjct: 133 LPLSVWRALVDHGGYGLRVVIITQQLSSRGLAIL-GNANVLRVENEDLCLTEEEIGDYY- 190 Query: 197 CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLV 256 C ++ + R+ GW AL L + AR + S + + + Sbjct: 191 CLAGVDLDLDQRRRLYLYSEGWIAALYLQLVGY----------ARTGSLEGRSSIHELVN 240 Query: 257 DEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGE 316 + + + L R L + + S ++ + G + L E LF+ R D Sbjct: 241 ELLWKGLSLEDRQVLFRLSPFDSFTVPQLSFLLGLDRVPDVLVERLGGWLFV-RYDIESR 299 Query: 317 WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDI 376 + H + +F+R + E A I AA E +QG ++A+ D + + Sbjct: 300 RYFLHAILLDFVRSAIRDEPEAFQRGILAAAGEWCASQGDKTQALFFLYRICDYRGIFSL 359 Query: 377 LLNH---AWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLA 433 L+ + + +L+ + ++ R ++ Sbjct: 360 DLHCYDMTRATLDAGREYMLKFLRDTVNNSTVE----------------MRCDYAFNFIS 403 Query: 434 RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSV 493 A + + A + D + +E+ R + L FY+ I A Sbjct: 404 MAFEAFNLGDVELYVGLCREMEAVLDGYDID-EESRRSLRGELYLARSFGFYNDIEAMGK 462 Query: 494 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 553 + +R+ L+ ++ + W + S++ G L ++ Sbjct: 463 ---------DHSRAYELLGPNSRLFKPDTPWTFGWPSVLGM--FHSGAGELDRELSDMDR 511 Query: 554 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 613 L L + RA+ L R DEAE +E+ C A Sbjct: 512 WLPLY--NSLTSGNGSGAELIFRAEALLHKGRDDEAEPLVLRALEITKRLNQDSLYLCAA 569 Query: 614 MLI-QCSLARGD---LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 669 L+ + +L RGD R+ +R + + + A V + + Sbjct: 570 FLLQRMALLRGDGPVFTEGRAMRDRCAR-MSSYALSNRITDVATGF-VSCLLGDTEGMPS 627 Query: 670 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 729 F + R +L G + EEL AR R + Sbjct: 628 RVCSEGFLTGASPAVPFSCMVY---GRLALLTGGERDLVLRSEELLFPARRYRNLLVEIY 684 Query: 730 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 789 + L+ Y + GR+SD L AL +A G I F + + L Sbjct: 685 MGIYLSVAYSRLGRESDGAEALGRALDMAMPDGLILPFAENADVLGSSL----------- 733 Query: 790 LEQHRAQRILREINQHHRHKFAHFDENFV---ERLLNHPEVPELIRTSPLTQREWQVLGL 846 ++ E R++F+ F + + ER+L E + LT RE V L Sbjct: 734 ------DVVMEERWSSERNRFSSFVKRYSLGKERVLQSLSGREAV--EGLTFRENDVALL 785 Query: 847 IYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 + G SN +IA L ++ T+K ++++++QKLG++ R+D Sbjct: 786 VSEGLSNREIAKRLFLSENTVKFYLKSIFQKLGISSRRD 824 >UniRef50_UPI0001C310C7 ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C310C7 Length = 873 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 191/942 (20%), Positives = 308/942 (32%), Gaps = 122/942 (12%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSL 64 ++ P V R RLL ++ L L++ PAG GKTTL++ WA + Sbjct: 2 TREHPPPLPRTLVHRPRLLERVDAGVRGPLTLVSGPAGAGKTTLLADWAHARAT------ 55 Query: 65 DEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLY 124 D+ + + Q A A + L ++ L AE Sbjct: 56 --ADDHRTVLWRTVETTAQ--AGDLLAQLTRAAPLPGASPLVAIVDGLGAHAAE------ 105 Query: 125 LVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQL 184 +P + E + +R + + L +V+ +R P L + +R+ ++E+G +L Sbjct: 106 -------RAHDPALAERVAALLRERTDALHVVLATRGEPPLPLGRVRLDATVVELGPAEL 158 Query: 185 AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 AFT +EA+ R + AA++ + V GWA L Sbjct: 159 AFTWEEARSLLAAR----LPAAQAHARWEQVEGWAAGLT--------------------- 193 Query: 245 GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQ 304 S L Y+ E+L + R FLL+ ++ + L +TG + L+ + R Sbjct: 194 -REPSELPAYVERELLGGLGDELRDFLLRVSVADELTPELAAVLTGAADAGGTLDRLARA 252 Query: 305 GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHA 364 + +D G + LR L E E+HR AAE G A HA Sbjct: 253 HALVVPLDRHGGGYRLARPLREALRAALPAALPGEASELHRRAAEWHGRAGDALAAARHA 312 Query: 365 LAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 LAAG + D L L + E L A+P +L +P+L + L ++ Sbjct: 313 LAAGAPELAADTLAGAWLDLLARGRDVEMAELLAAMPAATLAGDPELRVCAGALATARDA 372 Query: 425 YGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF 484 + E R D+M A A R ++A +G+ A A + P G Sbjct: 373 VAQALDRRFDGEAAAGATR-DSMGATLAAARLRLARLEGDVPAAADAAAALSDAGPDGGE 431 Query: 485 YS-----------------RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 527 R +A LG G + A ++Q AR H A Sbjct: 432 AWAETGAEVPGGLAAQRRRRTLALQQLGVAELVAGSAAGAAAHLEQALGTARAEGFDHLA 491 Query: 528 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-- 585 L + +G L++A A +L + + A + W Sbjct: 492 AACLGPLCGLDAQRGRLRSAAAWGAAAIELAERIDDRRPAVLVPAHVGLAVVAWLRDERF 551 Query: 586 ------------LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLN 633 L EA +A + A + G A Sbjct: 552 AAEAELARAEACLAEAGPAADPLAALTVRLPAAWLAAADARAAGPAGGAGTAGAAGRAGT 611 Query: 634 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK--------------- 678 + + ++ + +WL Sbjct: 612 AGAAGRAGTAGAAGAETELARLEEAAARALLAAPRLPDWLLLALDEARVKLLLALGRTGA 671 Query: 679 --PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLL 734 + R + A + L +PAE AR+ + + +LL Sbjct: 672 AANAASAPRGPSRPERLLLGAHVALAREDPAEARWLADRFLARATTDTRPAHVLEGMLLQ 731 Query: 735 NQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR 794 ++ G DA L A+ A F G + LR L + P + Sbjct: 732 ASTTYELGTVWDALSWLERAIAAAAEERCRRPFAEAGAPIGALLRVLARRGPWPPV--GF 789 Query: 795 AQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNE 854 +L E E S L+QRE +L + SG S Sbjct: 790 VAELLDE--------------------RPAGTAAEAPGDSALSQRERAILRYLPSGLSKR 829 Query: 855 QIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 +IAGEL V+A T+KTH+ ++Y+KL V R AV A++L + Sbjct: 830 EIAGELGVSANTVKTHVSSIYRKLDVRSRAQAVARARELGLL 871 >UniRef50_Q143R5 MalT n=1 Tax=Burkholderia xenovorans LB400 RepID=Q143R5_BURXL Length = 695 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 123/677 (18%), Positives = 241/677 (35%), Gaps = 27/677 (3%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS---QWA-AGKNDIGW 61 +LS P V R LA L + RL ++T+P GYGKT L+S +W + W Sbjct: 10 RLSPPDFAFEYVP-TRALASLRSRSLPRLTVVTAPPGYGKTVLLSTIYRWLCSTGERCLW 68 Query: 62 YSLDEGDNQQERFASYLIAAV----QQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 +LDE + + L A+ Q + +A + +L Sbjct: 69 LTLDERERDVRSVFALLRQAMAGSGQMGDEADIQLASAIADPVDMIDPGHAMEVVVSDLR 128 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + ID+ + +P+I + H+ N+ LVV S + +++ L Sbjct: 129 RLPGRTVVFIDNLDVCVDPMIAVFVERLTFHRAPNVHLVVSSVRNLPIDFVRMKLEVDGL 188 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 +G++QL+F E +Q F + ++ I GW A++L + + A Sbjct: 189 MLGTEQLSFDRNETRQLFAMSGLARLDDGIILDIHAHTEGWPAAVRLAQVLFSEQRQFAQ 248 Query: 238 KSAR--------RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT 289 ++ R + +S L + VL +D A FL++ A++R + L +T Sbjct: 249 STSSGSFTSTPLRDFNGDQKDISRVLTERVLAIIDPAHVRFLMEIALVREFSADLAEFIT 308 Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAA 348 G + + L+++ ++ L + + WF H L L Q + L E+ + AA Sbjct: 309 GNPSAREWLDDLLQRNLLIFAVGGGRRWFRLHTLLREHLLQESRERILPVRRTEVLKRAA 368 Query: 349 ESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNH-SELSLLEESLKALPWDSLLE 407 + + A+ AL A D +++ A + ++S+L E + L D Sbjct: 369 RWYTDRKDYVSALGSALEAPDVQQAENLIGRIARHVAADCGQMSILVEWSETL-VDLGGH 427 Query: 408 NP-QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKD----IREDTMHAEFNALRAQVAIND 462 P Q W + +Y + L + I A+ + LR +A++ Sbjct: 428 LPVQAQGWYVWALCHLMQYEKAKWALDILDRRISGSPPFPAAAGEVADLSFLRIVLAVST 487 Query: 463 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 522 D A A + L+ +V +G+L+ + E + Sbjct: 488 DALDVAHAQALIWLDNAEHYDPLHVGTIAAVAAMAALDRGDLSEGERHLDFAEGAIERSH 547 Query: 523 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 582 W I ++ + ++ A + + E + + + A++L Sbjct: 548 SMFVRAWIGILRAILELSRARPDVADRILSNVRVRVAAELGENSSVITIIDSVHARVLTD 607 Query: 583 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 642 A ++ ++ + + + DLD+A + L+ + Sbjct: 608 LGLFSAAYVPMMRSMQTVNHHGVPVTAELGLGACVAMRSGQDLDDASN--TSLDEIARRY 665 Query: 643 KYHSDWISNANKVRVIY 659 I +A ++R Sbjct: 666 APRIMTILSAQRIRRRL 682 >UniRef50_A8L327 Transcriptional regulator domain protein n=1 Tax=Frankia sp. EAN1pec RepID=A8L327_FRASN Length = 1102 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 110/515 (21%), Positives = 188/515 (36%), Gaps = 32/515 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIG 60 ++ +++ P + R RL L +R+ + +PAG GKTTL+ + A A Sbjct: 42 ILAARVRLPAPAG--MHRPRLAGPLIVPAAYRVGTVVAPAGAGKTTLLVEVAQACAWPTA 99 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LD+ + F H A S TS+ + Sbjct: 100 WLTLDDRIGGLDSF------------LAHLHAAAAAAAGLPAGSWTSIENAIVDLDRHLT 147 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 L +V+DD H + +++ + + P + ++V +R P L + LR+ Q+ E+ Sbjct: 148 DNLLIVLDDLHAVDGQPAEAAVQLLLDYLPPKVRVLVAARWRPNLDLHRLRLAGQIREVD 207 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 + L F E ++ F + E + + GWA LQL L+ R S Sbjct: 208 ADALRFRTWEVEELFRDCHGVRLRPEEVTALTRSTDGWAAGLQLFHLATRGRPASERAKI 267 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 G N +YL VL V R FL+++++ + + + G ++L E Sbjct: 268 LSGLG-NTRLTREYLTMHVLSAVSADERDFLVRTSVFDRLTEKRCDSLLGRTGSGLQLAE 326 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELP-EIHRAAAESWMAQGFPSE 359 +ER+GLF ++D G + YH + L +R E E E+H AAA G +E Sbjct: 327 LERRGLFTF-VEDDGRTYRYHEVLRIHLLERLVLEHGEERAQEVHGAAARLCEEDGALTE 385 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ +GD +R +L L + + LP +P ++L A + Sbjct: 386 ALLSYCRSGDWEQVRRLLGQGGRRLADDP-----AAWFELLPAAIRDSDPWVLLAMARRL 440 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL 479 + A +H E L + R + L + Sbjct: 441 AADGSLEAAADTYRDAATAFGSETPARVHRELAELDDWLHPAPRRGTTWLRTLRAVLADP 500 Query: 480 ---------PPGWFYSRIVATSVLGEVLHCKGELT 505 PP R +A V GE+ + Sbjct: 501 GPHVEGSADPPQTALVRGIAAFVAGEIALARQRFD 535 >UniRef50_A5V680 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V680_SPHWW Length = 837 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 149/870 (17%), Positives = 288/870 (33%), Gaps = 74/870 (8%) Query: 23 LAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAV 82 L + L+ + AGY KT +W D L A Sbjct: 10 HDWLRDPLAPPILLVEAGAGYDKT----RWCETLRD-----------------RALEAGF 48 Query: 83 QQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESM 142 T ++ S +L PL LVID + + E++ Sbjct: 49 ------------TTLFIEPASTSASQLGELVDAAERGAGPLLLVIDGFDRAPDRRFGEAI 96 Query: 143 RFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSP 202 Q + + SRN + + + L F + F+ Sbjct: 97 ADISARQRPGDRIAIASRNRIAIRFRRRWISGGAARVNEAALGFGRDQTAALFEG----A 152 Query: 203 IEAAESSRICDDVSGWATALQLIALSA-RQNTHSAHKSARRLAGINASHLSDYLVDEVLD 261 + + GW TA++ + L R+ RL ++ Y+ DE+L Sbjct: 153 LPDNAVDMVLAWSEGWPTAVEAVHLGWQRKRRTHDANDMARLIDEIWPDVASYIEDEILS 212 Query: 262 NVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYH 321 ++ R ++++A L + + L ++TG+ + L+++ + + L + + + H Sbjct: 213 DLAAPQRDLMIRTAFLETFDGDLAHKLTGDASTWDVLDQLVDRHV-LAADEGSDPSYRCH 271 Query: 322 PLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHA 381 PL L + E + R AA+ + + AI A AGD + L+ Sbjct: 272 PLVRRRLESDLRKR-GGEFRHLARKAAQIFWQRQDVQRAITCADLAGDGALAARWALSLD 330 Query: 382 WSLFNHSE-LSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARA---EH 437 ++F S L E ++ +P D L P+L L A+L R + +L E Sbjct: 331 TAMFGVSRGGRELREVMQHVPVDILETKPRLALAHAFLAAKSGRIDVADRILQHVRTTEL 390 Query: 438 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL-EELPPGWFYSRIVATSVLGE 496 + + + + +A+ DG LA L + E + G R +V Sbjct: 391 NGAAGSDRLLARDTAIVEVAIAMYDGRGFGGPALAALDMIEAVSYGDEGIRGFVENVRCA 450 Query: 497 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 556 + + +LA + + + + + I ++ + A Q Sbjct: 451 IAFDASDFPEALARYRNALHFYTCQNATNGLGYIHLHSGRIYAEMLNIEACARAYDHARQ 510 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 616 L EQ + + ++A+L + R +EA+ + + L Sbjct: 511 LFLEQRPQDEQSLRLIKPLQARLAYDQGRFEEAQRLSDGFAAEVGQGGYYWDALYLGFRT 570 Query: 617 QCSLA---RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 673 LA GD D AR L+ + + + + A+ L Sbjct: 571 AAKLAARRHGDAD-ARRTLDGAIEFARLNRIGHLEHLLLLERAALAPESDD----VAHLL 625 Query: 674 RHTAKPEFANNHFLQGQWRNIARAQ--ILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 731 + + R + RA+ + G+ + A L + L Sbjct: 626 DRGPLHAASPLPWRIRDLRAVVRARRDAMAGDLDGALARLFAQLDECHVQGRQRSRIDLL 685 Query: 732 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 791 + + L Q R+ A +L +A +LA + ++ F+ G Sbjct: 686 IAASLLLDQGQRRERAIDMLHEATRLARKGHIVAPFIENG-------------------R 726 Query: 792 QHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGY 851 A L + ++ FV ++L + + L QRE +L + G Sbjct: 727 DALALLSLLASGAVDGNGAGIGNDPFVSQVLALQDEAPSGPATLLNQRERDILRHLAEGM 786 Query: 852 SNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 SN+ IA +L ++ T++ +++ +Y+K G+ Sbjct: 787 SNKLIARQLNISPETVRYYLKGIYEKYGLH 816 >UniRef50_A6CKT6 Regulatory protein, LuxR n=1 Tax=Bacillus sp. SG-1 RepID=A6CKT6_9BACI Length = 930 Score = 278 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 123/672 (18%), Positives = 246/672 (36%), Gaps = 61/672 (9%) Query: 15 HTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-AAGKNDIGWYSLDEGDNQQER 73 +VRERL KL+ ++ +T GYGKT+LIS + K + WYS+D N Sbjct: 12 KILVRERLFLKLNKYPTKKVIALTGGTGYGKTSLISSYILQQKIEYLWYSIDRSSNN--- 68 Query: 74 FASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYH-- 131 S LI ++Q + ++S F + L++VID Sbjct: 69 -LSELIHTIEQDIQNIRGNIQISGSHLIKEKISSSFI-------DNKDSLWIVIDGMDIL 120 Query: 132 LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQ-LGIANLRVRDQLLEIGSQQLAFTHQE 190 I + I + + P +T V++ R LP + ++++ LL + + LA T E Sbjct: 121 HINDEEIRLFVSYM-SQFPSTITFVLIGRRLPSTFPTSRMKLQGDLLHLTQKDLALTKDE 179 Query: 191 AKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH 250 + + E R +++ GW + L A ++ + + Sbjct: 180 TQTLLRSIYHVNLSDYEIERSYNEMEGWPAGITLFAGIIKEYPMLEREKFVEHL-HESED 238 Query: 251 LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQR 310 +S YL +E++ + + FL ++ + ++ + ++ ++ LFL Sbjct: 239 ISHYLANEIIGKLPKDLQTFLYYCSLSCEIEREILKEFQPDVLVDQWIDTLKSLQLFL-- 296 Query: 311 MDDTGEWFCYHPLFGNFLRQRCQWELA-AELPEIHRAAAESWMAQGFPSEAIHHALAAGD 369 + + + H L FL ++ + E A++ +H+ A + + EA LAAG+ Sbjct: 297 YEGSLGNYRLHELIRRFLYKKMEEEWGKAKVVLLHKDLANLYKKKYRFIEAFSQFLAAGE 356 Query: 370 ALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA------------- 416 ++ +++ + A + L L+ L+ L L L +A Sbjct: 357 DVLAVEMIKHMAERYESEQFLRLMNGWLEKWSPSLNLSQISLFLFRATPINHTKKLIEPL 416 Query: 417 -------------WLMQSQHRYGEV--------NTLLARAEHEIKDIREDTMH--AEFNA 453 LM+ QHR + L+A E + + A + Sbjct: 417 KISLERNENKSKSTLMKLQHRLATIYFYAGNLEKALVAYKESLGFSYETNDVRMIALNTS 476 Query: 454 LRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQ 512 + AQ ++A LAK AL G+ +++ A L EV+ +G++ + + Sbjct: 477 MIAQTYRFMNEEEKALSLAKEALAMAEMTGFEQAQMHALWTLSEVMMNRGQIEKGRRFAE 536 Query: 513 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 572 Q ++ + D ++ S G ++ A E +A + ++ F+ Sbjct: 537 QAIDVSTKCDQ-AAVVYPYCSMSTYFLKIGNIEKALEWCNRALLHAEKFGIQADMAWVFM 595 Query: 573 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL 632 A +++ AE + ++ + LI+ L + L A + Sbjct: 596 GM--AVCYEEMNKINIAEKYLLKAEKCFKNFNYLHCI-VQMRLIEVLLKQEKLKEACVLI 652 Query: 633 NRLENLLGNGKY 644 + + +Y Sbjct: 653 ENANSTIKEYEY 664 >UniRef50_D2PS65 Transcriptional activator domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PS65_9ACTO Length = 1068 Score = 275 bits (703), Expect = 5e-72, Method: Composition-based stats. Identities = 150/776 (19%), Positives = 272/776 (35%), Gaps = 64/776 (8%) Query: 9 RPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGD 68 P TV R RL A L RL + + AG+GK+TL+ WAA + WY++ D Sbjct: 1 MPEPAQGTVARPRLTALLEEGVQRRLLTVVADAGFGKSTLLGSWAAER-PCAWYTVRAED 59 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTS-------LFAQLFIELAE--W 119 S L+ ++++ + Q + + +A + E E Sbjct: 60 RSLAAVVSGLVESLRRQVPALSTVLTAELQGPRGPDADAEQETRALAYAAVLAEALEQNL 119 Query: 120 HSPLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 + L LV+DD H + + +R P L LVV SR GI LR R Q+LE Sbjct: 120 TADLVLVLDDLHELAAGDPAARLIEGLVRIAPPALHLVVASRTAVPFGIDRLRGRGQVLE 179 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I + LAFT E + L + + V GW A++L + R + + + Sbjct: 180 IDATALAFTVPETVEVLRVVLGDG-AEELAEPLQAAVQGWPAAVRLAVEALRTVSAAERR 238 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 S R A + L DYL +EV A R + A+L + L + G + L Sbjct: 239 SRLRRALRSDGPLYDYLAEEVFAAQPAAVRRLVAAVAVLPRFSSGLCEAI-GLSDSADIL 297 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 +++ +GL + D + +PL +F R R + E+ + R A + + G Sbjct: 298 QQLRTRGLLVSAGDAD---YELNPLVRDFARDRLSSDE-QEMKALVRRAGRWFESVGEHR 353 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWD--------------- 403 +A+ A D+ + +L L + ++ ++ ALP D Sbjct: 354 DALACFQAV-DSDEVARMLTERGHVLVSGGLAEVVVAAVAALPTDLRTPATDQLEGEARQ 412 Query: 404 --------------SLLENPQLVLLQAW----LMQSQHRYGEVNTLLARAEHEIKDIRED 445 + + ++ + AW + + R R + + ++ Sbjct: 413 VLGDWQGAEQCFHRIIDADGEIPVGIAWRLGLIHHLRGRTDVAIATYRRGRVDGQQPADE 472 Query: 446 TMHAEF----NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 501 + + + LR + D A A+L G + +A +VL + Sbjct: 473 ALLQAWWAGAHWLRGEFDECRELIDAAHAAARL------SGDDRALAIAHTVLAMLAAVD 526 Query: 502 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 561 + + + + A + ++ + + A+G E ++A +L + Sbjct: 527 SDPRGNASHYLRALDHAERAGDLLQSIRIRVNRGSHHIAEGDYTLGLEELDQALELADRA 586 Query: 562 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 621 + R + L RLDEA + + + ++ Q LA+L + Sbjct: 587 GFAV--FRALALNNRGEALLRLGRLDEAIGELEASRALYQKLESKRVAQPLAVLGEVYRE 644 Query: 622 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 681 RGD AR+ + + K + + + + ++AA + A Sbjct: 645 RGDRAMARACFEEAIAMATDTKDMQSLVPSLAGLARVLAMEEPERAAELAEMARQAVGYG 704 Query: 682 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 737 G + + G + A EE +R R + L L L Sbjct: 705 PVLGQC-GALVALGWVTLHAGNKQDAAKTAEEAAALSRKRRDRAGLADALELYAAA 759 >UniRef50_B8GBN1 Transcriptional activator domain protein n=3 Tax=Chloroflexus RepID=B8GBN1_CHLAD Length = 1083 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 166/792 (20%), Positives = 289/792 (36%), Gaps = 39/792 (4%) Query: 21 RLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWYSLDEGDNQQERFASYLI 79 R+ +L+ A + L ++ +P G GKT ++ A G W D D R Sbjct: 48 RVEQRLAVAVDVPLTIVVAPPGSGKTVALAALATHGGWPAAWCRADTND-DPSR------ 100 Query: 80 AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITN-PVI 138 + + ++ R ++ L L EL L+IDD HLI P + Sbjct: 101 --LLAHLAAALSRVTSLDPNRLPRTIDGLINALTGEL---DDETLLIIDDAHLIDEQPEL 155 Query: 139 HESMRFFIRHQPENLTLVVLSRNLPQLGI-ANLRVRDQLLEIGSQQLAFTHQEAKQFFDC 197 + FI QP L LV+ R P + A R+R + L I + L FT EA Q + Sbjct: 156 RALIERFIVAQPPRLHLVLAGRREPNSPLIATARLRGEALLIEAADLLFTSDEAAQLWQQ 215 Query: 198 RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVD 257 + + + +GW AL++ + + + L DYL Sbjct: 216 AGKTL--PVDFDELMTFSAGWPLALRIALDATDWRSALGLRE-----QKGKPALDDYLER 268 Query: 258 EVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEW 317 EV + + L +SA LR + L + N + E+ R+ LF++ + G Sbjct: 269 EVFALLPEPLQRCLQRSAGLRWITPDLCAALDPTFNASELIAELRRRRLFVEPFGEHGV- 327 Query: 318 FCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDIL 377 + PL +L +R + E +HR AA + G A++H +AAGD Sbjct: 328 -RFQPLIAAWLSRRAAAD--PEWVHLHRQAAAYFQQHGDHESALYHQIAAGDP-AAVTTF 383 Query: 378 LNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEH 437 L A +L + + ++ L E P+L+ LQA + +R RAE Sbjct: 384 LPLARTLLAERRAEAVLDWMRRLALTG-DETPELIELQAAALHQLNRLEAALATYRRAER 442 Query: 438 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 497 + + +A + ++ P A L + AL+ LP RI + E Sbjct: 443 AFAASGDRLGQSRCLRGQAAIYLDTVQPAPATDLLRRALKLLPRQCGAERIELLLMQAEN 502 Query: 498 LHCKGELTRSLALMQQTEQMARQHD-VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 556 +G L L Q Q+A+ H Y + + + +L G L+ A + E+ + Sbjct: 503 WANRGRADIGLRLEQTARQLAKAHGLSAQYDPQAEVLRPRLLLRAGRLREARQLLEE--R 560 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA-RSGIEVLSSYQPQQQLQCLAML 615 L +EQ + H + + A + +A A A R IE S + L Sbjct: 561 LWSEQSCTRATGHREPLLLLALINAMLGVGPQALAFAHRMLIEAQQSGNLVTEALAELRL 620 Query: 616 IQCS--LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 673 +ARGD A +R LL + +++ A A+ Sbjct: 621 GHAYQLIARGDDQAALQHYSRGLRLLQQVTVPRTRAEGYLGLTLLHGHAGDLARAEADAR 680 Query: 674 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 733 A + ++ + L+ + L++ + ++ R L L Sbjct: 681 EGLLLAASAGDEWVAALMLLALGSVTLVADDPRGYEWLDQAEQRFQAGRDTFGLFLVHLW 740 Query: 734 LNQLYWQAGRKSD----AQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 789 + GR + +V+ +A++ I + +A + L++ T+P Sbjct: 741 RALAALRVGRTAAVDPLVDQVMHEAVEYGYEHVLIGPSLFGPRDIAALVPLLLRARTMPA 800 Query: 790 LEQHRAQRILRE 801 + A R+LR+ Sbjct: 801 -HRDTAIRLLRQ 811 Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 62/409 (15%), Positives = 107/409 (26%), Gaps = 32/409 (7%) Query: 323 LFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIH-----------HALAAGDAL 371 L L+ + AE E+ AE+W +G + H L+A Sbjct: 476 LLRRALK-LLPRQCGAERIELLLMQAENWANRGRADIGLRLEQTARQLAKAHGLSAQYDP 534 Query: 372 MLRDILLNHAWSLFNHSELSLLEESL----KALPWDSLLENPQLVLLQAWLMQSQHRYGE 427 + E L E ++ + P L+L M Sbjct: 535 QAEVLRPRLLLRAGRLREARQLLEERLWSEQSCTRATGHREPLLLLALINAMLGVGPQAL 594 Query: 428 VNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY-S 486 E + AE A I G+ A + L L + Sbjct: 595 AFAHRMLIEAQQSGNLVTEALAELRLGHAYQLIARGDDQAALQHYSRGLRLLQQVTVPRT 654 Query: 487 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQT 546 R L + G+L R+ A ++ +A A L+ + + Sbjct: 655 RAEGYLGLTLLHGHAGDLARAEADAREGLLLAASAGDEWVAALMLLALGSVTLVADDPRG 714 Query: 547 AWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL----------LWAWARLDEAEASARSG 596 +E ++A Q L R A L L + E Sbjct: 715 -YEWLDQAEQRFQAGRDTFGLFLVHLWRALAALRVGRTAAVDPLVDQVMHEAVEYGYEHV 773 Query: 597 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR----LENLLGNGKYHSDWISNA 652 + S + P+ + +L++ D A L + + YH + Sbjct: 774 LIGPSLFGPRDIAALVPLLLRARTMPAHRDTAIRLLRQGFPSIATDDTVDDYHPGFTLRV 833 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 701 + + A W R A+ F ++G W + L Sbjct: 834 QMLGAFRVWRGNQEIQAREWQREKARQLFQLLLTMRGNWVQREQICAWL 882 >UniRef50_A5UVS9 Transcriptional activator domain n=2 Tax=Roseiflexus RepID=A5UVS9_ROSS1 Length = 1070 Score = 271 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 145/795 (18%), Positives = 269/795 (33%), Gaps = 67/795 (8%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGA-NNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYS 63 KL P + R +LA+L A + R+ + +PAG+GKTT ++QW A + + WY+ Sbjct: 8 KLVVPTSARPLIERPNVLAQLDRAIRSKRVVALAAPAGWGKTTALAQWVAQRTMPVAWYT 67 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 LD D F YL+ +V G I +A+ L + Q+ + A+ Sbjct: 68 LDSADRDPHVFLDYLLHSVADFVPGAPGIAARLAETTPQG-LAEMIHQVALAFADAPEHF 126 Query: 124 YLVID--------DYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRVRD 174 L++D I + ++ I + LV+ SR LP L G+ + + Sbjct: 127 ALILDDVHVLDDDQAQSIPGVSLVFTLLASIAEYASHCHLVLASRTLPVLHGMVRMVAQQ 186 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIA---LSARQ 231 + L F + ++ + + ++ V GW T + L ++ + Sbjct: 187 RAAVFDYSVLQFHRDDTQRLAGITSGLILSDEAAEQLTASVGGWVTGIVLSLDQPVAHKD 246 Query: 232 NTHSAHKSARRLA----------GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMN 281 R L N S + Y +++L + + FL +++L ++ Sbjct: 247 GMTGQQVVDRHLMHVPTPEEAVIEANTSQVYAYFAEQILAPLPADLQRFLEDTSVLHDLS 306 Query: 282 DALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELP 341 + +N L+EI R+GLF+ W YH LF ++LR R Sbjct: 307 PQRCDILRSADNSAEYLDEIRRRGLFV---SSRAGWLSYHSLFRDYLRSRLAR-DPQRCR 362 Query: 342 EIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKAL- 400 ++ R+A + + A+ A+ LAAGD D++ + L S + L + L Sbjct: 363 QLLRSAGDLYAAEDDIERALDCYLAAGDDQHAIDLIRSAVPRLRQCSRQTTLLTCFERLH 422 Query: 401 ---------------PWDSLLEN-----PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIK 440 P + P L+L +A + + L A Sbjct: 423 RARRTNDQRTASGGFPPATRAARKQSIPPDLLLAEARVYSDLALWERAYLALHLA----G 478 Query: 441 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 500 I + ++ AE L A++ + G+ A+ + ++ R+ Sbjct: 479 AIGDASIRAEAQILSAELQVLQGDYARAQHALR--FVDVNNLDNRLRLEYHVAAARAHIM 536 Query: 501 KGELTRSLALMQQTEQMA----RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 556 GE+ ++ +++ + D AQG +A ++A Sbjct: 537 AGEVAAAITELERAHTLVATLIDTVDNPAALADIYDNLGWAYAAQGDRPSAIRYLKRADA 596 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-PQQQLQCLAML 615 + + + R EA + G+E+ + +++ L L Sbjct: 597 CWQSSGNQGR--RALTLNNMGVMAMEEGRFAEARTTLDLGLEIARQTELRREETVLLCSL 654 Query: 616 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 675 + L GD + A + L S + A + ++ + A W Sbjct: 655 AELDLREGDFEQAIQRFTTAHALATRLDIASS-VEAAAAGALWAAILSDNLTLAQAWHDT 713 Query: 676 TAK---PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 732 A P R Q EF +L E SL + LL Sbjct: 714 AASIVTPLQPEVRGRLALARAALALQCPHPEFASFASLLAEATTYEESLSEDERIYMALL 773 Query: 733 LLNQLYWQAGRKSDA 747 + ++G + A Sbjct: 774 RTELAFARSGWHAAA 788 >UniRef50_D0WI68 Putative HTH-type transcriptional regulator MalT n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WI68_9ACTN Length = 787 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 156/872 (17%), Positives = 290/872 (33%), Gaps = 119/872 (13%) Query: 33 RLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAI 92 R+ALI +P G+GKT L + Sbjct: 21 RIALICAPLGFGKTELA----------------------------------------HRM 40 Query: 93 CETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPEN 152 + + A T + + +E A+ H + + D+ H + ++ + + Sbjct: 41 LQGLDVLEVDAETTDVGVAVTVEAAQGHDAVLV--DNIHDAVSSSQGAALASVVAQCGDT 98 Query: 153 LTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRIC 212 V +SR + + L+ + + L FT + + RI Sbjct: 99 -RFVFISRAPMPGWLTPFFAKGDLVIVTNDDLFFTDTDIARLLVAN-GLAPTPFLVERIA 156 Query: 213 DDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLL 272 S + A+ L + + + + Y E D + +L Sbjct: 157 AATSRYPLAVSLALMHILHGEDAWEADL-------TNEVMRYFESEFNRRFDPKIQELML 209 Query: 273 KSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLR-QR 331 +L +++ + V GE +G+ L+ ++ F+ R D + P FL+ +R Sbjct: 210 LIPLLDRIDEPFLANVLGEADGKALLDALQHVTCFVTRDDQG---WNVKPGMRGFLQWER 266 Query: 332 CQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELS 391 + A I A ++AQG +A+ L A D++ + +L HA Sbjct: 267 MRRHEDAARSSIIERAVNYYVAQGDYIDALDLCLRAKDSVRMLAVLDEHARLNPGTGTYC 326 Query: 392 LLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAE---HEIKDIREDTMH 448 LE LP D + +P+L+ + L A E + R++ + Sbjct: 327 ELERYYHDLPEDMICASPRLMRTMSLLDSMLVDIVGSERWYAELESYARAPERTRDEKLV 386 Query: 449 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 508 A N +A L C LT ++ Sbjct: 387 AHAN------------------------------------LAYLDLALPHRCLTSLTDAV 410 Query: 509 ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 568 + + R D I+ L T E LI + L Sbjct: 411 GALAK----VRASDDPELMPSMTSAMPSIINGGRDLSLWVPTDEMTSALIGKIAEAALGK 466 Query: 569 HEFLVRIRAQLLWAWARLDEAEASARSGIEVL----SSYQPQQQLQCLAMLIQCSLARGD 624 A + + ++ VL P + + + + + GD Sbjct: 467 LAVGCTEIALCESKFEKGEDVTPYIARVNAVLPKIRRKGDPSVEFAAIGIQCKNLMCCGD 526 Query: 625 LDNARSQLNRLENLLGNGKY--HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 682 A + L+ L K I+N + +R W A W+ A Sbjct: 527 ARQALTLLDLHRRHLAQSKILERKRIIANLDALRCHAWLRLRQAERAHAWVEENAPDLSR 586 Query: 683 NNHFL-QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 741 FL + +R +++A I ++ A ++ L+E+ +S + D +L W++ Sbjct: 587 PLDFLNRYIYRAVSQAYISESRYDEAFRLISMLDEHVKSRNGVIDRIHYGVLTAIAAWRS 646 Query: 742 GRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 801 G K D +R + DAL+ A R G++ + G A+ L ++ + ++++ + R+++ Sbjct: 647 G-KGDWKRWITDALEQAKRYGYVRTVTLYGAAVLPLLTEIQEHAEEMDVDEEQLARLVKG 705 Query: 802 INQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELE 861 P T PLT+ E QVL LI SN +I L Sbjct: 706 ARAQALWYPDFMS-------------PPSGLTEPLTKTEIQVLHLICQDKSNVEIGELLG 752 Query: 862 VAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 + +T+KTH+ ++ KLGV+ R A + A++L Sbjct: 753 IKLSTVKTHVSHILAKLGVSRRVQAAREARRL 784 >UniRef50_Q0AY14 ATP-dependent transcriptional regulator-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AY14_SYNWW Length = 823 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 137/883 (15%), Positives = 286/883 (32%), Gaps = 82/883 (9%) Query: 16 TVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKNDIGWYSLDEGDNQQ 71 +RL KL + + ++ +P+GYGKTT I + I W++ D + Sbjct: 12 HYYSDRLKRKLEQIHLVPVTIVEAPSGYGKTTAIRDFLQNSLSQGTPIYWFT--AMDEKP 69 Query: 72 ERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYH 131 L +++ + A + L + YLVID++H Sbjct: 70 SAAFRRLCREIEKIDRYAGERLVKIGLPNAGTIGE---ASEALRLVQCKHETYLVIDNFH 126 Query: 132 LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEA 191 + + + + H + L +++++ + + ++ LL I + ++ Sbjct: 127 FLQDALPPAFFLALLEHGGQGLHVIIVT-QMLKRDTLSIVAGHGLLHITVSDMRLNTRDI 185 Query: 192 KQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHL 251 +++ + I ++ + GW A+ L + + Sbjct: 186 CRYY-ALANVKITLEDAQEVERYTEGWIIAVYL----------QLSTFLETGTFSDTPGI 234 Query: 252 SDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRM 311 + V D + ++FLL + ++ + G + +E Sbjct: 235 LALMEHLVWDKLTEEQQNFLLYLSPFEMVSVQQSCSLIGCDTLPEY--ALEAFASPFIHY 292 Query: 312 DDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDAL 371 D T + H + Q+ A + A + +G + A+ + D Sbjct: 293 DPTERQYEVHSILTELFIQKRGERGPAFERQCLLQAGDFCRDEGQTARALGFYMQIRDYE 352 Query: 372 MLRDI-LLNHAWSLFNHSELSLLEESLKA-LPWDSLLENPQLVLLQAWLMQSQHRYGEVN 429 + + L + N + L + P + + +L AW++ + Sbjct: 353 RMLSLDLSEMNLEIINAVPFTELALDIAQNCPAEIKKKYILNMLRIAWILFMAGMNEQFE 412 Query: 430 TLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIV 489 L+ + + + E+ L + N N E + + A + Sbjct: 413 ILMDELHTMPELLDNSDLLREWLLLSS--YRNFPNLAEMTVIVRQA------APLFKSQY 464 Query: 490 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 549 + +L L C G + + + RQ D + G A Sbjct: 465 SQVILPTTLWCFGNYSPLTEFYTKPGEADRQAD-----VLEEYITIYSRLTNGHGSGADA 519 Query: 550 TQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 609 RA+L + L++AE A + S Q L Sbjct: 520 LF------------------------RAELAYQRGNLNDAEILAYKAAFLAESKQQSVVL 555 Query: 610 QCLA-MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI-SNANKVRVIYWQMTGDKA 667 A +L +L + D + +E+ + + I S + +R + + Sbjct: 556 LGAAILLAHVALHKADTVGWERAIASMEHAASFDRQDTFVIRSVIDIIRGVLLNEFQNHM 615 Query: 668 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIV-LEELNENARSLRLMSD 726 + A+WL+ A E LL + E A ++ + A L Sbjct: 616 SIADWLQ-NADFEDRRLSPAVINIALFVHLVFLLHQGEFARVIGTAQAVRPAEGLLSPYG 674 Query: 727 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNT 786 L+ + G + A + DA + A G +S F + + + ++I + Sbjct: 675 DIFACFLMATSHMALGNRVQAAAFVEDAARKALPDGLVSPFASYSQLLGDLVDEVIARDY 734 Query: 787 LPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGL 846 LE+ + R +F+ E L + P+ LT+RE++V L Sbjct: 735 PALLEKFKT----------VRKRFSQGWFTLREALFSGELPPD------LTEREYEVAKL 778 Query: 847 IYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 +G N +IA +L + +T+++H+R ++QKL + R + Sbjct: 779 AATGLRNSEIAEKLVITESTVRSHMRTIFQKLQIDRRTRLAEK 821 >UniRef50_A1TY93 Regulatory protein, LuxR n=4 Tax=Gammaproteobacteria RepID=A1TY93_MARAV Length = 878 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 145/883 (16%), Positives = 294/883 (33%), Gaps = 50/883 (5%) Query: 19 RERLLAKLSGANNFRLALITSPAGYGKTT---LISQWAAGKNDIGWYSLDEGDNQQERFA 75 R+RL A S ++ L +P GYGK+ L + +++ Y Sbjct: 31 RQRLGA--SATPEAKVVLYRAPPGYGKSVQVALAANRRDPEHESAVYINGRSYPDPREVT 88 Query: 76 SYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITN 135 L AA+ E + S T L L + + +D Sbjct: 89 DSLFAAL------VLYQIEGPESREALKSDTDTIEALRDALFNARKTIRICLDG--PGEG 140 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF 195 + + I P+N+ + + L + ++ G+ +LAFT ++ K+ Sbjct: 141 ADNGDLIEDLICETPDNVKFFIA--PGSAGALPRLSLMTGVVTYGADELAFTEEDLKEPE 198 Query: 196 DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYL 255 + I +E+ I GW ++L RQ + L + Y Sbjct: 199 KLGEVTGIGGSEAGNIIQATGGWPALVRL----MRQTPNP------DLPPESWPETRSYF 248 Query: 256 VDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTG 315 D +L + R F+ +A+L ++ V + + + + L +G Sbjct: 249 RDNLLSVLPRHARRFVCNAAMLEEVSAECYDYVYKTQQADQEISFVNEKFALLAPTVSSG 308 Query: 316 EWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRD 375 E HP+ +LR + + A +G +I+ AL A D R Sbjct: 309 ERLAMHPVLRGYLRSVFNATQRERRSYVLKRVAFWHWRRGEYLHSINVALEASDHRWARV 368 Query: 376 ILLNHAWSL-FNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR 434 + + + E+ +L + +P ++ + L + AW + + + +LA Sbjct: 369 VSDSIILDVALRQGEIEVLRTWFEKVPVRTIKKIASLGIGYAWTLYFSQQARQAEEMLAS 428 Query: 435 AEHEI-KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSV 493 ++H I + + ++A E++ L + ++ + A + Sbjct: 429 SDHPISRGLGNLDEEGWRELVKAIGKATQDELSESQTLCEKWIDAFGDRNMVGKGAALTC 488 Query: 494 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 553 + L+ + + + + +W + + +G + A + Sbjct: 489 QAFIASSDRRFEELEELLHRAAVANQSSNQLYAFIWLKTAEIQTELFKGDMVRAMYLLRQ 548 Query: 554 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ-CL 612 A + + + + +++ L + Q+L + SA+ + +Y L C Sbjct: 549 ANKTAEKIGVPKSFLNKMLGVLELQILLEQDHHQVSPESAQISFDFALNYGVTDILCGCT 608 Query: 613 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 672 + +G D A + L + + ++ KV++ + + ++ Sbjct: 609 QACSRLLYHQGLRDRAMALLEQARLAASERELPR--LNILTKVQLAEFTLLNNEELEPPI 666 Query: 673 LRHTAKPEFANNHFLQGQWR---NIARAQILLG-EFEPAEIVLEELNENARSLRLMSDLN 728 L ++ F N Q R + ++ LG +F A E + A ++ Sbjct: 667 LPDESELSFLPNQNRAIQARIALVKSMYRLRLGKQFGVAGNYAREALQAASAISDARTRV 726 Query: 729 RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLP 788 + G A+R++LDA A HF + + L L L Sbjct: 727 AAQYCQALAAFALGSSKPAKRLILDANLHAEHLNC--HFT--PLWIKEALLSLSPLARNL 782 Query: 789 ELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIY 848 + D L+ P VP S +T R+ +L I Sbjct: 783 FDDPPDT-----------AEAATTRDPEVRAEDLSAPPVPGHT-DSVITVRQISILKCIS 830 Query: 849 SGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 SG +N+ IA L V +K H++ ++ +L V R AV A+ Sbjct: 831 SGMTNKAIAERLLVTEDAVKWHLKRIFSELEVTSRVQAVTEAR 873 >UniRef50_A3UHL3 Transcriptional regulator, LuxR family protein n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UHL3_9RHOB Length = 871 Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 152/901 (16%), Positives = 286/901 (31%), Gaps = 75/901 (8%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDN- 69 + R+RL ++G + L +P G+GK+ I+ A D GD+ Sbjct: 25 KLTQGCLRRDRLD--IAGHPGAKCLLYQAPRGFGKSVQIALCAQSAA-------DRGDDC 75 Query: 70 ---QQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIE--LAEWHSPLY 124 F +V +A AI ++ + ++ L +W P+ Sbjct: 76 IYLDLSSFWP---ESVSEADLIATAIVAMLSPPDLPVTSGDRGPEIIALRLLFDWKRPVM 132 Query: 125 LVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQL 184 + +D + ++ PE + LVV + P + L V ++ IG ++L Sbjct: 133 ICLDGV--SDSAATQRFLKTITLETPEAVRLVVSG-HQPG-TLVTLSVVSHVVTIGPREL 188 Query: 185 AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 +FT E P+EA +++I + +GW L S A Sbjct: 189 SFTLDETCSIL------PLEADRATKIYNKTAGWPLLCALAGKSKASGDAIADL------ 236 Query: 245 GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQ 304 S + Y +VL + L+ ++ L + V + +L E+ + Sbjct: 237 ----SEVQAYFETDVLAQITRPLLDHLINASWLEEITADCSDYVFKINDSSCKLAELASR 292 Query: 305 GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHA 364 L + + + + +LR R + + A + + A Sbjct: 293 HGLLISSVEKPKCYEMNRALKEYLRNRFIEANGSRRSYFLKRIAFWHWRKKEYRLVVDVA 352 Query: 365 LAAGDALMLRDILLNHAWSL-FNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQH 423 L A D + + + L E+ L +P LL+ P L + AW++ Sbjct: 353 LRAHDHNWAKRLTDQALFDLALRQGEIEALTIWFTGIPRAKLLQMPSLAIGYAWVLYFSQ 412 Query: 424 RYGEVNTLLARA--EHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 R E +L+R + E+ + + A E++ ++ Sbjct: 413 RAQEAQDVLSRLNDQRVSAPSEEEDSNGWGKLVHAIGLATHDELKESDERCAAWVDTYGS 472 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 A + + + + ++ + W Sbjct: 473 ANPVGHAAAQTCRAFIAASGRQFAALSDQIASATVVSGAVRHRYAFGWLAAAGILAKLLN 532 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 G + A +A + N H + L Q+ + E + ++ Sbjct: 533 GDIYGARSEIRRAQKNENVAHERTPFIKGMLAAFELQVQTEEESITPDERLVQEALDFAL 592 Query: 602 SYQPQQQLQ-CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 + + + + + +GD A L R L+ + ++ Sbjct: 593 EFGVTDVVWNTVRSAAEIYIRQGDTLQAFLLLERC-RLMAKDRGLKRLGILVRLGSEVFA 651 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL--------GEFEPAEIVLE 712 T L P + FL Q R I LL G+ AE+ Sbjct: 652 MGTRTSTP----LSTEPLPSDEDLLFLPNQNRAIQAEIALLEASRFLRDGKLGLAEMHAR 707 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 + N ++R R L + G K A + + DA A + G Sbjct: 708 KALSNFSAVRDQRGEIRAQYTLATAIYLMGEKKQALKRIADADLKAQQLGAFRSL----- 762 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 + + + L + + + Q R K D ER P R Sbjct: 763 --------INRRHFLRVISPAAKAFLDQRTTQVARTKVPAHDVQITER-------PFAYR 807 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 ++P++Q++ VL G SN++IA + V T+K H R + + L VA+R +AV A+ Sbjct: 808 SAPISQKQVIVLQHAALGLSNKEIAVRMHVTEDTVKWHFRKILRGLNVANRTEAVMAARS 867 Query: 893 L 893 L Sbjct: 868 L 868 >UniRef50_Q2JEI5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Frankia sp. CcI3 RepID=Q2JEI5_FRASC Length = 1235 Score = 261 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 113/540 (20%), Positives = 187/540 (34%), Gaps = 65/540 (12%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN---D 58 L+ ++ P V R RLL L A L ++ +PAG GKT L++ WAA + Sbjct: 48 LLLNRFVPPPAPPGHVDRPRLLDALDAATVLPLTVVRAPAGSGKTVLVAAWAAARRGETP 107 Query: 59 IGWYSLDEG-------DNQQERFASYLIAAV-QQATNGHCAICETMAQKRQYASLTSLFA 110 I W +D L+ + + + + Sbjct: 108 IVWVRVDPAVVPGPRGGGPGLPLWPQLLHGLGRHGLLPAGEGFGSRYGPAADDLYDRRYR 167 Query: 111 QLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANL 170 +L LA+ + L++DD HLIT + + I + ++++ R +P + + L Sbjct: 168 RLANILADLPTSFILILDDVHLITRRSDLDGLELLIDGAADRARIILMGRMVP-VALHRL 226 Query: 171 RVRDQLLEIGSQQLAFTHQEAKQFFDC-----RLSSPIEAAESSRICDDVSGWATALQ-- 223 R + EIG LAFT EA R A S + GWA L+ Sbjct: 227 RAAGWITEIGPADLAFTRAEAAALLGRQEITGRQEITASPATVSGLVHVTEGWAAGLRLA 286 Query: 224 -----------LIALSARQNTHSAHKSARR-----LAGINASH--LSDYLVDEVLDNVDL 265 L R A S +G A H ++D+L EVL Sbjct: 287 AGALAARERRPLPGADGRWEAAVASPSGGLGDTAGFSGAVAGHPAIADFLRAEVLAGKPS 346 Query: 266 ATRHFLLKSAILRSMNDALITRVTG------------------------EENGQMRLEEI 301 R FLL++++L M L V +G+ L + Sbjct: 347 PVRRFLLRTSVLERMTGPLADAVAAERMDAGVLAAATGSRAAPAPTVGARVSGKEVLAAL 406 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 F+ +D G WF +H L LR + + E+H AA + A ++A+ Sbjct: 407 AHADGFVVELDHDGGWFRFHRLLAAVLRSALAADGDEDTAELHLRAAIWFAAHRRTTDAV 466 Query: 362 HHALAAGDALMLRDILLNHAWSL-FNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 HHA AGD +L++ + H ++ + +P +P+ L+ A Sbjct: 467 HHAAHAGDWWYAACLLVDGTEMVDALHGGVAGFSPIMTGMPDSPASWSPECALVAAVGRL 526 Query: 421 SQHRYGEVNTLLARAEHEIKDI---REDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 + + G L A I R + + + + A G +E + + L Sbjct: 527 GRGQVGAATRYLQVARGSIAAAVVSRRRALAVRADLVDLRRAELAGACEEMLSITRRLLR 586 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 74/459 (16%), Positives = 122/459 (26%), Gaps = 31/459 (6%) Query: 446 TMHAEFNALRAQVAINDGNPDEAERLAKLA-LEELPPGWFYSRIVATSVLGEVLHCKGEL 504 E + A VA + LA + P Y + + +GE Sbjct: 794 AGLVEAHLAHAMVAAARVDDVRVTHHLDLARMAFTPAHPPYLLDLIVVLEARARCRRGEA 853 Query: 505 TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 564 A + R ++++L A G Q A + + H Sbjct: 854 DDVRAARRLLASRGRPAGPPLCLSLWRAAETDLLIAVGNAQAARQLLGQLADTRRPDHAL 913 Query: 565 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 624 L + E A + + + + + R D Sbjct: 914 ALAAARANLACA---------DLEGAEHAVAALLRADGGGGGSVVSACVVAAVAAARRDD 964 Query: 625 LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 684 A L R L + ++ + I G +AA + T + Sbjct: 965 HARATDLLARALALAEDEGLAGPFLEFGGEPLAILDAHPG-LSAAHPFFVSTLRAMATTE 1023 Query: 685 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 744 R V+ L + L + N G Sbjct: 1024 SAAAVNPRTPT----------DGGPVMAVSGAGVPPLGVPPLGAAGLEVPNGGTPSGGMP 1073 Query: 745 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQ 804 S V A R +S + M R + R + Sbjct: 1074 SGEVAVPAPAWPATPRRSVMSGRMARPALMTPAARSAPPDRDRQGADVPRGPSGPSGPSG 1133 Query: 805 HHRHKFAHFDENFVERLLNHPEVPELIRTSP----------LTQREWQVLGLIYSGYSNE 854 L P E S L+ RE VL + + + Sbjct: 1134 PSGPAGYGLGTGTSPISLGQPGARERSPGSRDGRGPGAGGRLSDRELAVLSYLPTMLTTT 1193 Query: 855 QIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 +IA EL V+ T+KTH++++Y+KL V R+DAV A++L Sbjct: 1194 EIAAELFVSVNTVKTHLKSIYRKLDVPRRRDAVHRAREL 1232 >UniRef50_C5C0G8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C0G8_BEUC1 Length = 854 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 151/896 (16%), Positives = 286/896 (31%), Gaps = 85/896 (9%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK----NDIGWYSLD 65 P + V R R+LA+L L ++ +P G+GKT+L+S W +D+ W +LD Sbjct: 18 PRVAESYVPRPRVLARLERLA--PLVIVRAPRGFGKTSLLSWWLRTTKHTDHDVVWLTLD 75 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 + F L+A ++ A TS + + L L Sbjct: 76 RHAVTEAEFWELLLAGLRSAGLAEGVGA------------TSARRSVHDAVRSLTRRLVL 123 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLS---RNLPQLGIANLRVRDQLLEIGSQ 182 V+D++ + + + + + Q + + L V R+L +LG+ L + + S Sbjct: 124 VMDNFPSVPESLDGDLVD--LVQQSDLIHLAVAGHRHRDLERLGVIALDA----VLVLSS 177 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 LA + + + A+ R+ +V GW ++ + Q Sbjct: 178 DLALDADAIGE-LAAGIGLDLTRAQIDRVAGEVGGWPALVRALLHGIEQRDVVGESFT-- 234 Query: 243 LAGINASHLSDYLVDEVLDNV-DLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 L D V EVL V D + R F+ ++++ L + + + L + Sbjct: 235 ---YVDWRLVDLFVREVLAGVVDESVRSFMARTSVADEFTRELAQELYPDRDVTFLLSRM 291 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 L ++ D + Y + + + A + + A+ Sbjct: 292 VEAHLLGVQVIDGVPVYTYPRAVRFAIDRLLAESDPELRQALLGIATRWFADRDDARGAL 351 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HA+ A D + H L L +++ +P D + NP+L + +++ Sbjct: 352 VHAVRARDWDQAVSAVDRHWVQLVAQ-HPDALSHAIRGMPVDLVASNPKLRVAHEFILPL 410 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE---- 477 H +T A D + + + A A G D A+ +A+ Sbjct: 411 THPTDLASTHRAELAGVAPRTESDAVRTRVSTVIALSA--TGYVDIAQEVAQQWGRAADV 468 Query: 478 --ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 P + G G++ S + A++ S + + Sbjct: 469 SGAAPGDVDHEVPTLLFQWGSTRLAAGDVIGSRYAFSEAFAWAQRMGDALVRRTSAVGLA 528 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 G E + E + + A+ L L + A Sbjct: 529 LTHAINGVPLLTHEWLGRV-----ELDEDVEEPVTRAAVVIAEALAGVDMLADEAALLAD 583 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 + SS L + Q + GD + + E L + Sbjct: 584 NLPERSSPDELWALVAF-VRGQIIASGGDPGAMLACADACEEGLARAPRGGIAEALLVST 642 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 715 G++A L +A+A++ + + + ++ Sbjct: 643 LGEVLVAQGERARFRRILASATDSPI----------LAVAKARLAWQDGDGVKARTIAVD 692 Query: 716 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 775 R L+L+ L R++ A AL++A+ TG F A Sbjct: 693 ALQRPTITQRSRLELLVLMAVLDLDRDRRASALSYARQALQVAHGTGQRRPFQFVPRAQL 752 Query: 776 QQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSP 835 L + + + F +P + Sbjct: 753 ATLA-------------TELPDLGELLGEPAFEAFGDV-------------MPPAVSAVV 786 Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 LT+RE +LG + S S +IA L V+ T+KT +R +Y+KLG R++ +Q A+ Sbjct: 787 LTERERTILGELASTSSVPEIATRLFVSPNTVKTQLRGIYRKLGTHSREETLQRAR 842 >UniRef50_B2UD70 Transcriptional activator domain n=1 Tax=Ralstonia pickettii 12J RepID=B2UD70_RALPJ Length = 1071 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 141/781 (18%), Positives = 249/781 (31%), Gaps = 34/781 (4%) Query: 5 SKLSRPVRLDHTVVRERLLAKL-SGANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWY 62 SK++RP + V+R R+L ++ G + + SPAG GKT L + A WY Sbjct: 8 SKINRP-QSGGIVLRPRVLNRIGRGFAASPIVWVASPAGSGKTKLAISYLEASGLPAIWY 66 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL-AEWHS 121 +D GD F A A + L + + F L + Sbjct: 67 EVDAGDMDPASFFRTFGQACAAHLGADSATQPPLFSPDHLFDLAAFARRYFRALFSGLPE 126 Query: 122 PLYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 LV+++ H P ++ + E++ ++VLSR+ P +A L+ QL + Sbjct: 127 ATLLVLENVHAAEAEPSFKGILQAALAEASEHVRILVLSRSAPPPELARLQANQQLALVD 186 Query: 181 SQQLAFTHQEAKQFFDCRLSS--------PIEAAESSRICDDVSGWATALQLIALSARQN 232 Q L T +E ++ E + + GW A+ L+ + Sbjct: 187 WQHLRLTEEETGAILAGHPAALATLEQRPDAERELAGGLHARSGGWVAAVVLLLDQIGRV 246 Query: 233 THSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEE 292 + L Y E++ R FLL +AIL + + A ++TG Sbjct: 247 GSYDVDRLD-----SREVLFPYFAQEMIVAASPELRRFLLCTAILPNFDLAEARQLTGST 301 Query: 293 NGQMRLEEIERQGLFLQRMD-DTGEWFCYHPLFGNFLRQRCQWEL-AAELPEIHRAAAES 350 + + Q F+ + G + YH LF FL R A E ++ AA Sbjct: 302 DVDHFVTSAHCQQYFIDQFGSGAGASYQYHALFREFLLSRLPDAFSADERQQLTANAAAL 361 Query: 351 WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ 410 A+G + A AG L + L HA + L + L LP L +P Sbjct: 362 LEARGELAGAGELLADAGLMPQLAALALRHAPMVLQQGRYRTLSDLLGQLPTAVLNADPW 421 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDT-MHAEFNALRAQVAINDGNPD--- 466 L+ + G A + + ++++ + + Sbjct: 422 LLFWAG-TSRMALDPGNARLYFEPALTLFQAHDNAAGCYLAWSSIVDCIYFESRDYRPLT 480 Query: 467 ---EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 523 E + P +R++A+ + H G S + DV Sbjct: 481 HWLEMLDTLRARYPAFPDAQIEARVLASVLAALAFHAMGH-ADSRHWTDRALVFIGTVDV 539 Query: 524 WHYALWSLIQQSEILFAQGFLQTAWETQE-KAFQLINEQHLEQLPMHEFLVRIRAQLLWA 582 A + G L+ A + + + Q + L +A Sbjct: 540 QTQASLG-FMLTVYHLWTGDLERARVVLQLMRAAVASPQTSDLLRTTILTTEAMGYWFFA 598 Query: 583 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 642 A + S + L +++ G++ A S +L + G Sbjct: 599 ENDACIAVVEQTEALMHASDIYLWKHALLNHGLAA-AISAGNVMEAESFRAKLAQDIHMG 657 Query: 643 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 702 + + + + + Q +A + A LLG Sbjct: 658 RPLDQAMHHFERGWLALQQDRLREAELMVEFGRNGFRSLNFRFGVAFTLATSAYIAHLLG 717 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 + E A+ +EE +R + L L++ + G + L +AL L R G Sbjct: 718 QAEQADTFVEEAEALSRDVDSKVALCHTLMVRAVMALDRGAPTS--PWLPEALALGRRFG 775 Query: 763 F 763 Sbjct: 776 I 776 >UniRef50_A3PV03 ATP-dependent transcriptional regulator-like protein n=1 Tax=Mycobacterium sp. JLS RepID=A3PV03_MYCSJ Length = 881 Score = 256 bits (653), Expect = 3e-66, Method: Composition-based stats. Identities = 126/638 (19%), Positives = 211/638 (33%), Gaps = 56/638 (8%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDI 59 ++ KL P +VR RL L + + + +PAG GKTTL+S+ AA + Sbjct: 10 VVFREKLRAPEPTG--LVRARLEQALLDGPSAVVDSVVAPAGSGKTTLLSRVAATSSAPV 67 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 GWY + + D + RF ++L AA+ L L W Sbjct: 68 GWYRVTDDDGPEARFVAHLAAALGPVCGTGDVRS---------------MDALLTALDNW 112 Query: 120 HSP-LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 P +++DD H I + ++ F+ +P L +++ SR P + I L+V E Sbjct: 113 SGPRAVVILDDLHEIADTPAEHALERFVSLRPRRLRVILGSRRTPDINIPRLQVSGTFHE 172 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 IGS QL F E ++ F P+ ++ + GWA LQL L+ + + Sbjct: 173 IGSDQLRFRSWEVEELFANVYRQPLRPEAAAALTRRTGGWAAGLQLFHLATAGRSAAERH 232 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 A G + + YL VL + R FLL++ L ++ + + L Sbjct: 233 QAVSDLGGRSKLVRSYLARNVLGALPDERRVFLLRTCTLGRLSGPACDALLNTDGSHRVL 292 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQGFP 357 E ++R+ LF DD G F YH + N L E ++ + + + G Sbjct: 293 EMLDREQLF-TSTDDDGLHFRYHEVLQNHLELALVEEYGSDGARAWYARSGVVLESLGDL 351 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 A A D + ++ LP + +P L L A Sbjct: 352 RSATKAFAKAEDWPAVSRLIRRAGADGIGE----------DLLPPVTFQRDPWLALANAR 401 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIR--EDTMHAEFNALRAQVAINDG---NPDEAERLA 472 + D +E A+ + G R+ Sbjct: 402 RLARDGALQAARDAY-LFTQSCYDEPGFSGICMSEAQAVAGWLPATGGGSPAFRHWSRVL 460 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + L ELP + + + + L ++ R+ + + Sbjct: 461 RDGLRELPDLRAPAATTGAAGVRLAHGLLAVVAGENDLAREVIASVRRDESASATVAIAA 520 Query: 533 QQSEILFAQGFLQTAWETQEKA-FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + + + A L + LP L QL+ A Sbjct: 521 DLAWEMLDVLCVDAAGPCHSTGPGDLAALAEVNGLPWLARLAHGLQQLVLA--------- 571 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNAR 629 S +L+C A +I ARGD+ A Sbjct: 572 ---------RSGDAPWRLECCAEVIAACDARGDVWGAA 600 >UniRef50_A5V4I4 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V4I4_SPHWW Length = 904 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 147/901 (16%), Positives = 306/901 (33%), Gaps = 62/901 (6%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKNDIGW 61 + + P+ + R +A + + L + SP+G+GK+TL++Q + W Sbjct: 36 RFTPPIPQRSFIPRA--IASRISRSPYPLTFLASPSGFGKSTLMAQAFDLARSEGESARW 93 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 +L E F+ YL +++ + +A + L A+ Sbjct: 94 LNLYHRAAGAEGFSHYLCLSLK-----DDGEAQDIAPGAGPFGIDDLLAE-VDATCRRDG 147 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 + L +D+ + + +H + LVV SR P +A + ++ Sbjct: 148 SVSLYLDEVAPGDLDTVLGLSQMIGKHFGDKAKLVVSSRVAPP-RLAGVLGDGGIMY-TP 205 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 +LAF+ E + FD + + + + GW LIA HS + Sbjct: 206 AELAFSPAEVAELFDGG----LPERDVAALVATTGGWPA---LIASVRHGTGHSPADHSL 258 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRH--FLLKSAILRSMNDALITRVTGEENGQMRLE 299 G ++D++ D L +V ++R L + + + + + Sbjct: 259 GTGGEAGDMIADFVRD--LMDVAPSSRDIEVLAAAFAFGNATAPIFEH-DDFASAGEIVT 315 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + R GL R + T + H + + + + +IHR+ + S +A G Sbjct: 316 RLARDGLVKVRSEGTRLVYEPHAAVRFAVDRLGRRSSQKRMLDIHRSLSTSLVASGDRVG 375 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 AI HAL GD +L D++ L + + +++ A+P L P ++L + +++ Sbjct: 376 AIRHALETGDLDLLCDLIEAGGGWLLILQWGAPILDAVNAIPIGRLGGRPAMLLTKVYVL 435 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG-NPDEAERLAKLALEE 478 GE LL +++ A + I+ E + ALE Sbjct: 436 MQARAIGEARQLLDEISTDLEPASFPDDEAFHSFQIGYGLIDGVLRSYEMRPIDFPALER 495 Query: 479 L-----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 L + + ++ G G L + A ++ + + + Sbjct: 496 LRDHGPADIRNIADAMILNLKGGYQLRDGLLVEAEATGREATLKCQAAKATFVEAYVQLW 555 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 G + A + A+L + + A A Sbjct: 556 LGHAHLQSGNTRDASRRFAAVLDIAENCFGADSNQMIAAKVFLAELEFERGEAERAYAII 615 Query: 594 RSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGD-LDNARSQLNRLENLLGNGKYHSDWISN 651 + + + P + L+ + + + + A S L+ + + N + Sbjct: 616 EAVFDRIEELDPWYEMLRPFYRIASIRVQNREGTERAISFLDTALDRMEN-RNLGLLSRY 674 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 711 +R + A E + ++ + N R + G+ A + Sbjct: 675 LRSLRAEMLVQSERDIQAIE----RGVGELQHVEPIESAFLN-VRVGLKRGDVPAALAGV 729 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 + L + + +L + G A ++ +A +LA ++ HF E Sbjct: 730 DALLDQPAVRECARRMITVTVLKAACHAARGEVRAAGDLVAEAQRLATQSDLRGHFEHEV 789 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 + + P L ++ + + R + D+ + R Sbjct: 790 ASSEGAV------GGAPLLRPDPGRQAMARLPAP-RGELIEVDDRSLPR----------- 831 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 L RE +VL I G S+++IA + ++ T+ + ++LY+K+GV R A+ +A+ Sbjct: 832 ----LGPREREVLDCIVEGLSSKEIAWRMSLSVGTVLGYRKSLYRKIGVNCRSAAISYAR 887 Query: 892 Q 892 Q Sbjct: 888 Q 888 >UniRef50_C8XH94 Transcriptional regulator domain protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XH94_NAKMY Length = 990 Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats. Identities = 141/699 (20%), Positives = 248/699 (35%), Gaps = 59/699 (8%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-- 58 +++ KL RP + + R RL +L + RL L+ +P G GKTTL+++ AA Sbjct: 5 VVLTEKLRRPEPVG--LARRRLEEQLLAPSTSRLDLVVAPPGSGKTTLLARVAAAAESAG 62 Query: 59 --IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 +GWY + D + F ++L A+ +T A + + L + Sbjct: 63 SAVGWYRVTADDATESAFVAHLARALH---------LDTAADESSVTDMLELLDR----- 108 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 +P +V DD H I V ++ F++ +P +L ++V R P+L I LRV QL Sbjct: 109 -SPTAPTLVVFDDVHEIAGSVAERALDQFVQLRPPHLRVLVGCRRPPELNIPRLRVSGQL 167 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 EI S L F E ++ F P+ ++ + GWA LQL L+ + Sbjct: 168 REITSDDLRFRSWEVEELFLSVFREPLSPESAAALTRRTGGWAAGLQLFHLATSGRSAVD 227 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 A G + + YL VL + RHFLL++ L ++ L + G Sbjct: 228 RGRAVDDLGGRSKLVRSYLARNVLAELPEERRHFLLRTCTLGTLTGPLCDALLGVTGSST 287 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESWMAQG 355 L+E+E + LF DD G F YH + L E AA E + +A + G Sbjct: 288 ILDELEHRQLFTSS-DDDGHTFRYHEVLRTHLEWALVQEYGAAGAREWYSRSAALLESVG 346 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 A+ A D + +L + + L LP + +P L L Q Sbjct: 347 DQRAAVRAYARAEDWGAVGRLLQTRGTGPDAGAAGTDLL-----LPPAVVEHDPWLSLAQ 401 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLA--- 472 A + + R G + + R + E + R+ A+ A Sbjct: 402 A---RRRVREGALTAAVDRFRRAESLLDEPDFRDDCQRERSVAAMWASTDTTGMSWAVDG 458 Query: 473 -----------KLALEELPPGWFYSRIVATS-------VLGEVLHCKGELTRSLALMQQT 514 +LA L P + + S G + G+ + + Sbjct: 459 RGSARHWSIPIRLATRRLGPARVAAPALTGSTPAPHELARGIISLLAGDFRDARRTLDAV 518 Query: 515 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 574 +A + + L + + + I + + Q+ + + LP L R Sbjct: 519 --VADRAAESTHRLLADLTIAVIDLIRDRPGDPAS---RLGQIALDAEVAGLPWIARLAR 573 Query: 575 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 634 + + A D A + ++ + A+L + G L + ++ + Sbjct: 574 GLGECVLAA--TDPAAWRLAACVDQIDECDEAGDAWGAALLTLAAAVTGLLADPVAEAHG 631 Query: 635 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 673 + + + + + G + A L Sbjct: 632 FADAAARFRRLDAPVPALWAQALQACALAGRRRPGAAEL 670 >UniRef50_A6NRJ4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRJ4_9BACE Length = 817 Score = 241 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 149/903 (16%), Positives = 297/903 (32%), Gaps = 108/903 (11%) Query: 14 DHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND---IGWYSL--DEGD 68 E + KLS + L ++ +PAGYGKTT + WA I W++ D Sbjct: 2 GKLYFSEEMSQKLSKIYSRGLVMVEAPAGYGKTTAVR-WAMRDVPSEQIHWFTAVTCLQD 60 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVID 128 + F ++Q + Q A + E YL++D Sbjct: 61 TSLDWF-------IRQIGQLDQDAGAALRQLGFLNRSNVSIAADILANLEVSESCYLIVD 113 Query: 129 DYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRV----RDQLLEIGSQQL 184 ++ I + ++ + + L ++++S+N LR + S+ L Sbjct: 114 NFQFIGDNWPLPLLQALADRRRDELHVILISQN-----FGKLRAVFENTTNVYRFSSRDL 168 Query: 185 AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 + ++ +L + ++ I + GWA A+ L Q+ + Sbjct: 169 LLNRKNIAEY-GQQLGLKLSRQQTETIYRNTEGWAAAVSLYFEHLCQDGGGLPEF----- 222 Query: 245 GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQ 304 + L + + + LL+ A+ + + + + + L + + Sbjct: 223 ----QDMDALLHEFFWGKLSREEQDMLLRVAVFDYIREEQLPEIAPGQEAA--LSGLLVR 276 Query: 305 GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHA 364 + L D H L +FL + +++ +A E + +A+ Sbjct: 277 -IPLMHHDQRERISYPHELLRHFLLRMLNTAPGDFRSQVYESAGEIYRRADNNKKAVECF 335 Query: 365 LAAGDALML--RDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQ 422 AG+ L ++ + S +L + LK P L P+ +L + + Sbjct: 336 FRAGNDEKLFSCELTGLLNEKFGDTSYTALAQTVLKRCPAGLLAAWPRSMLRLCVALFAG 395 Query: 423 HRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG 482 + L RA I + + + E++ + A + +A LA +L P Sbjct: 396 TDFDGFAAELERAHDIIAENGDPQLMGEWHIVAAFREFPNIAGMKAHYLAAESLMTEPSR 455 Query: 483 WFYSR---IVATSVLGEVLHCK-GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 F R + T + + + K G + + ++ ++ + H A Sbjct: 456 IFTPREPYMFGTPSMWYLFYRKPGWMMETAEELRDMLEVYNRLTNHHGA----------- 504 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 A+E + L + DE++ A Sbjct: 505 -------GAYELY------------------------LGEALSVQGKFDESDIYAHKAAM 533 Query: 599 VLSSYQPQQQLQCLAMLIQCSLARGD----LDNARSQLNRLENLLGNGKYHSDWISNANK 654 + +Q A+L+ + L A L ++ + A Sbjct: 534 LSERWQNASVTYGAALLLGINAIYQSDMISLQKAIEYLENKALAYPFLQHTAINTQMAET 593 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 714 VR + + +A W R + N+ R L+ E + Sbjct: 594 VRGYLLGLMMEPDRSAEWAR--GPADMLNDLTFTNFMAKTNRITDLILRKEYKRAIASVE 651 Query: 715 NENARSLRLMSDLNRNLLL--LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 + RL+S RN + L Y G + A L +L LA + + Sbjct: 652 ASLSLDSRLISLSTRNFMCVGLALCYLAIGLPNRAADWLDQSLTLAEQ--------DKNY 703 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 R+ + + L + + + +++I H + L +PE + Sbjct: 704 TFLACFRKYLSILFLLPSMKKKHGKAIQKIKALEIHYTKAEESRIFFMLEKYPE-----Q 758 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 LT+RE +V L+ +G N +IA +L ++ T+K+HIR+++ K + R V + Sbjct: 759 MGQLTEREREVAQLVAAGLRNREIAEKLFISEETVKSHIRSIFNKTNIDRRSRLV----E 814 Query: 893 LLK 895 LLK Sbjct: 815 LLK 817 >UniRef50_A6M0Y9 Regulatory protein, LuxR n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M0Y9_CLOB8 Length = 822 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 130/896 (14%), Positives = 287/896 (32%), Gaps = 100/896 (11%) Query: 13 LDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI--GWYSLDEGDNQ 70 + R+R+ L + I++ GYGK+ + + + W + + Sbjct: 7 RPKLLYRKRINKLLLEIFRVPVYFISASMGYGKSIAVRNFIEKNKRVQTIWLDITNDEID 66 Query: 71 QERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLY------ 124 ++ + + + + E+ + + Sbjct: 67 DMWIWKKFCDLIKNINFKLGEMLYAYGVPNNNKDVYKIIDIIRNEIRQETIIIIDDWDDE 126 Query: 125 -LVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQ 183 +V I+ ++ I NL +V++SR P ++ + + + + Sbjct: 127 KIV----------YINHLIKAIILEDISNLHIVIISRKKPANEYIEFELKQKCMIMRQED 176 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALS-ARQNTHSAHKSARR 242 +AFT E +FF + E + + GW +A+ L + QNT A Sbjct: 177 IAFTFDETIEFFK-INGIILTEVEEKELYEYTGGWTSAMYLALIQYYSQNTFDNIPKATE 235 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 L I V D D T+ LLK A++ + +T +E + + + Sbjct: 236 LIKIA-----------VYDKFDEVTKQILLKLALVENFTIEQAMYITEDERSKEVIRRVC 284 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIH 362 F+ R D + + H + N L + +L E++ + + A+ Sbjct: 285 SNNCFI-RYDKKEKIYRLHSILKNALEEELALSN-VDLMEVNNICGDWYAKNFNDIYAME 342 Query: 363 HALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQ 422 + A + + D++ + + +++ L ++ P L + Sbjct: 343 YYYKAKNYERILDLIERNYTIDLTNLYKEIIKPVFNELTISEKIKRPIAYLTYLFFYILY 402 Query: 423 H-RYGEVNTLLARAEHEIKD---IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 R L I+D ++ + E L + + + Sbjct: 403 GNRIAGAKLLYEAKAIYIEDKNLKDKNQILGEIAFLESILVFYNVR-------------- 448 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 R++ L G + M T H+ Sbjct: 449 --------RMIEYHKKAYELFKGGGSRIANNKMPATF------GSPHFLYL-------FH 487 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 G L+ E ++ H+ + A+ + E A Sbjct: 488 RKVGNLKELVEFFQQGINYF--IHISNGGAAGANYLMMAEYFYETGDSKNGELFAYKAFH 545 Query: 599 VLSSYQPQQQLQC-LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 + + + C L +L + + + + ++ L N +++ + Sbjct: 546 KAKTKKQTSIIICSLFLLTRICVNKNYKNEVKNNFYNLIKEYENLNIPI-FLNGSQIAIG 604 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA-RAQILLGEFEPAEIVLEELNE 716 +TG+ W+++ E + + G I A IL G + EI +E + E Sbjct: 605 YIDGITGNLENLNKWIKNMESHESKDIMPVIGMNHVITGLAMILKGSYIELEIQVEIMLE 664 Query: 717 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 776 + + + + + + + A++ LL A++LA + + FV + Sbjct: 665 VYTGKKSIFGIIYAYIFDSIAKSKLYGREIAKKSLLKAIELAEKDHIVMCFVELAPHILP 724 Query: 777 QLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPL 836 L + + K +++ +++R N ++ L Sbjct: 725 LLESIKNE---------------SAYVKCLIPKCKEYNQIYIKRYCNLEKI-------EL 762 Query: 837 TQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 T RE +++ L+Y GY +I+ +L +A T+K HI ++Y KL V ++ A+ ++ Sbjct: 763 TPREIEIMKLVYHGYKQSEISDKLNIALVTVKKHIASVYCKLNVRNKTIAINQLKE 818 >UniRef50_B8HJC4 Transcriptional activator domain protein n=6 Tax=Arthrobacter RepID=B8HJC4_ARTCA Length = 985 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 145/741 (19%), Positives = 252/741 (34%), Gaps = 49/741 (6%) Query: 19 RERLLAKLSG-ANNFRLALITSPAGYGKTTLISQWAAG-KNDIGWYSLDEGDNQQERFAS 76 R RL S N R+ + + AG GKTT I Q AA I W +LD D R Sbjct: 2 RPRLNQLFSQLINQNRVVWVAATAGSGKTTAIVQAAATWGGPIAWLTLDGTDAAPGRLLI 61 Query: 77 YLIAAVQQATNGHCAICETMAQKR-QYASLTSLFAQLFIELAEWHSPLYLVIDDYH-LIT 134 YL AA+ + + R + + L A+ L LV+D L+ Sbjct: 62 YLEAAIAAHVPDAAGLASSALTARIPHPEVAGLLAESV-----GDEDLLLVLDGLENLVG 116 Query: 135 NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQF 194 + + +R+ P L +V+L+R + ++ D++ IG + LAFT +EA Sbjct: 117 AYEALDVVGAVVRYAPVGLKVVLLTRVDLPIDLSAQAGVDRVATIGEEDLAFTPEEAA-- 174 Query: 195 FDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDY 254 + + I ++S + GW T + A +R G A L Y Sbjct: 175 -GALVEAGITDIDASSAVEATGGWVTGVLFEAWHSRLYISG--------TGGEADPLHGY 225 Query: 255 LVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDT 314 L ++L + R FL+ S++L + + + G+ N L + L + + T Sbjct: 226 LASQILAKLAPEEREFLIVSSLLDEVTPSRAAAL-GQSNAGDLLVRLRSHHLPVSWISGT 284 Query: 315 GEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLR 374 HP F +L + AE+ RA + + +G EA+ LAA + Sbjct: 285 YRM-RCHPRFREYLVTCLERRGKAEVQATRRAYGDLLVTEGHLEEAVEQFLAAEELDRAV 343 Query: 375 DILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR 434 D + + + + E L L + +L L ++ Y + + Sbjct: 344 DAAEVVIGDVLDRLDFVVAERWLGYLAPPGSSGSRRLGPATLMLSIAREDYRKGVAIADD 403 Query: 435 AEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF------YSRI 488 + + A+ A + D+ + LA +R Sbjct: 404 LQANGVRDDLARLSPRGGAIMAWCYWHLDRLDDMRAVIDLAPNSPEIDAVRYLLSLATRR 463 Query: 489 VATSVLGEVLHCKGELT----RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 544 AT G L R + ++++ D A S + L A G L Sbjct: 464 EATGAYPAPTLSGGPLDALVMRVHYAHGRLSEVSKMPDSPWAAAVSAPWRVGALRATGRL 523 Query: 545 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 604 A E A + H MH + +L+ +EA+ G + L Sbjct: 524 TEALELYRSA----DAGHWAPAWMHGIVGP---ELMIDLEDTEEAQRVLAKG-QGLVRAS 575 Query: 605 PQQQLQCLAMLIQCSLARG---DLDNARSQLNRLENLLGN-GKYHSDWISNANKVRVIYW 660 + L LI+ L D A + L ++EN G + S+ + + ++ Sbjct: 576 GSVVFEWLNRLIEAKLELRLNHDPVAALNLLEQVENAGGRHYDFISEALDTWKGLALLLS 635 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 720 + D A LR N L I + E+ ++ + + Sbjct: 636 RSDNDDAVVM--LRRAVNSMTEANRILDLPAAAI---YLAEAEWRQGDLTESDAAADQAM 690 Query: 721 LRLMSDLNRNLLLLNQLYWQA 741 + + + +LL +QA Sbjct: 691 VAARLQESNHQILLALADFQA 711 >UniRef50_C1RKJ7 ATP-dependent transcriptional regulator n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RKJ7_9CELL Length = 997 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 128/642 (19%), Positives = 220/642 (34%), Gaps = 28/642 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIG 60 ++ ++L+RP RLLA+L GA L + + G GKTTL++ A A + Sbjct: 16 VLRARLARPEPTGLRRP--RLLARLVGAAAPPLVAVVAGPGCGKTTLLAHVAEAAGLPVA 73 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LD + + +L A C + + + + A L Sbjct: 74 WVTLDPALDDPQVLLRHLHVA-----------CAALPWRGPHEPWPTADAALAALGDGLA 122 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 P LV+DD H + + +RHQP L L + SR L G+ + + + Sbjct: 123 GPALLVLDDVHTAERRRAAQVVDLLVRHQPAGLQLALGSRGL-HPGVPSRGLAGTARVVD 181 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 + L F E + F ++P+ AAE + + GWA L+L L+ R S+ Sbjct: 182 GEALRFRTWEVDELFRGHHATPLPAAEVAELTQRTHGWAAGLELFHLATRDRPASSRTRL 241 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 AG ++DYL VLD + ++ R FL+++++L ++ + G + L Sbjct: 242 LERAG-RGPAVADYLAGHVLDPLPVSLREFLVRTSVLGRLSAERCDALLGTDGAARMLAA 300 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRC-QWELAAELPEIHRAAAESWMAQGFPSE 359 R GL D G + H + +L + A E+HR AA +A G E Sbjct: 301 AHRHGLLTAVDDAGGTRYACHEVVRGYLLDTLAERAGGAVARELHRRAAALALAAGEHDE 360 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ + A D +R +L L L LP ++P + + A Sbjct: 361 AVRSSCRAQDEDAVRRVLHLAGEDLARRPGP-----WLDLLPDAVRDDDPWVAVAVARRH 415 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTM-HAEFNALRAQVAINDGNPDEAERLAKLALEE 478 ++ A + T+ E + +R + G P L + AL Sbjct: 416 LAEGVPERALAAYGDAAERAATAADRTLVIRECHLVRTWAEPSPGAPTYWVALVRRALAR 475 Query: 479 LPPGWFYSRIVATSV--LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 P + + A V ++ + R+ + Sbjct: 476 -PRDCLAADVAAHDVGRALAPAVAALVGGDVRDAARRFAVVHRRAGTPPVVEALALLGEA 534 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 + A + +E+A L + + A E G Sbjct: 535 AALTLVHDRGARDARERAHTAAGLLGAPALERLADGLDLAADPAVGDGLRHLRERCTGVG 594 Query: 597 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 638 ++ L L + R + AR + LE L Sbjct: 595 DTWGAAVLG--LLDALRAVTAVPSRRRAVVVARDAADELEAL 634 >UniRef50_A9AYH6 Transcriptional activator domain n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYH6_HERA2 Length = 1064 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 148/744 (19%), Positives = 262/744 (35%), Gaps = 70/744 (9%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG--KNDIGWYSLDE- 66 P D + R RL A+L + RL ++ + AGYGKTT ++QW D WY L Sbjct: 22 PQLNDDLIQRPRLQAQLEACWSCRLTMVVAAAGYGKTTALAQWMQQTLGGDWLWYGLHSP 81 Query: 67 -GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 +Q +R S L A Q SL LF + LA + L Sbjct: 82 TEADQLQRLLSSLTKA-------------RFPQINPINSLADLFD-CWATLA--PRRIAL 125 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 V DD + + R P NL L++ SR LPQL A L R Q ++ + +L Sbjct: 126 VFDDCQHLQASA-WRLLNELARFAPTNLHLILSSRQLPQLDWAGLAARGQYRQLTAAELR 184 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAG 245 F+ E ++ + ++ +GW L+L R L Sbjct: 185 FSQAELQELLPTQ-----SPSQRQAAWQATNGWPAGLRLW---------------RALPS 224 Query: 246 INASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQG 305 +SD+L +VL + A R +A+L N A++T + + + Sbjct: 225 GYQGTVSDFLAQDVLGQLPEAVRRTAQFAALLPFFNQAVLTAMAAPDPA-----SLWHYN 279 Query: 306 LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHAL 365 LF+ + D EW+ + P + LRQ+ AE+ ++ AA + QG + A+ Sbjct: 280 LFV--LPDHAEWWRFEPFWLEVLRQQ----PLAEITQLLAQAATWFEQQGHLAAALDVWC 333 Query: 366 AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRY 425 G + + L +H L + + L+ LP + +L+ L ++ +H Sbjct: 334 RLGQWAQVAEQLKHHGLQLLAQ--HQPVLQWLQQLPATE-RQTAELLHLDGLALR-EHDP 389 Query: 426 GEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY 485 G LA+A + + + + + G+ +A+ + W+ Sbjct: 390 GLAAQTLAQAAQRYRAEQRYAEAFQVVGEQCLIYFWQGDEQALIAVARESFSLKSFVWYR 449 Query: 486 SRIVATSV-LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 544 R L +G ++LA + +A+ + + + + Sbjct: 450 QRRDLLKFPLLLFQIKRGRYIKALA---TAQSLAQSELPFFWRWVAACVVGGLYTILTLP 506 Query: 545 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE---AEASARSGIEVLS 601 + E Q Q + M L+ + A L + A D+ A+ A + Sbjct: 507 NEGIQWLEVWLQHPQVQ--AEPAMRMSLLDLLATCLMSRAAPDDRIAAQDLADQASRLSE 564 Query: 602 SYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 Y + +LQ + +L D + +L L + S + +R W Sbjct: 565 RYGVRLTRLQTRGTKLGLALLEADRPTTERLIQQL-LLPSDEPLPSIMRNRLLALRAFAW 623 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFL---QGQWRNIARAQILLGEFEPAEIVLEELNEN 717 G+ A + + + ++ W +A+A GE++ A LE Sbjct: 624 ASLGEIKLAQHDATLSERGLIRDDALYGADPRMWLMLAQAWFCCGEYQRALAALERAKPL 683 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQA 741 + + R L+ WQ Sbjct: 684 IEAAQSPILRLRAGLVQLASRWQL 707 >UniRef50_Q1IZS9 ATP-dependent transcriptional regulator n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IZS9_DEIGD Length = 993 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 151/702 (21%), Positives = 224/702 (31%), Gaps = 59/702 (8%) Query: 18 VRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASY 77 R RLL L A R+ + +PAGYGKTT ++ + W +LD D + A+ Sbjct: 17 ARPRLLTLLRSA---RVVTVVAPAGYGKTTTLAAHLSDLGRAAWLTLDADDADPQVLAAG 73 Query: 78 LIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPV 137 L AV + G + +T+ A + LV+D+ + P+ Sbjct: 74 LAVAVS-SLPGGTGPEALLDAGAPPRRVTARVADVLDAAGAL-----LVLDEAQHLAGPL 127 Query: 138 IHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRDQLLEIGSQQLAFTHQEAKQFFD 196 E ++ + + +LSR + L L I + LAFT E Sbjct: 128 TSELLKELL-----GGRVALLSRTPLDSPDLTRLEAGGDLRRITAPDLAFTPAELADLLA 182 Query: 197 CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINA-SHLSDYL 255 + E AE GW A + +A +A Q S A G L YL Sbjct: 183 AQ-GVKAEGAEVRLAHAVTEGWPIAARFLAQAAAQGRVSLTSLADLDGGEAQLGTLFAYL 241 Query: 256 VDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTG 315 EVL +D R L +S++ + L+ V E+ Q L+ + R G FL R DT Sbjct: 242 AQEVLGPLDPVLRFLLTRSSVFEELTPELLAAVLEEQQAQALLDALTRGGTFLTRTGDT- 300 Query: 316 EWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRD 375 + HPL LR E EI A + G P A+ L AG+A + Sbjct: 301 --YRAHPLLRAHLRGLLA---PGEAREIAARGAAYFEGTGRPRRALAAHLQAGNAARAAE 355 Query: 376 ILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARA 435 +L ++ ++L+ SL LP + P L L ++ RY Sbjct: 356 LLASYGGGWLAQGRVTLVSRSLARLPASAWT--PALHALSGDALRLASRY---------- 403 Query: 436 EHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLG 495 E AQVA++ P A A P +R + Sbjct: 404 -EEALAAYAQAAALARALGEAQVALDTVQPALAWGPLDQAEALTPDE--TTRAQVRRMRA 460 Query: 496 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 555 E G+L +LAL AR A+G A Sbjct: 461 ENHLNAGDLRSALALAPNLAGGARYA--LRSGQLGQALALARQAARGEAGGAR------- 511 Query: 556 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ-QQLQCLAM 614 + H E L + FL + +EA AR G+ + + Q A Sbjct: 512 --AAQNHREGLLLASFLHATLGE-------PEEAARCAREGLAEGERLESRFVQSLAQAR 562 Query: 615 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 674 L + D AR LE L G+ + AA Sbjct: 563 LGHAQVIAERPDAAR--AAYLEALTLAQGVVPRLQVEPRMGLAYLEARAGNLSLAAEHEA 620 Query: 675 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 716 + + A ++ GE LE Sbjct: 621 QALAHTGGDQYVAGLTRLTAALGRLHGGERREVLPGLEVAQA 662 >UniRef50_Q67R77 Putative transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67R77_SYMTH Length = 1070 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 129/814 (15%), Positives = 251/814 (30%), Gaps = 60/814 (7%) Query: 16 TVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWYSLDEGDNQQER- 73 + R L A+L RL ++ +PAGYGKT+ + + A + W LD + R Sbjct: 15 HLPRPHLTARLQEGLTRRLTVLLAPAGYGKTSALRAFVGAAGLPVLW--LDRPFETEWRG 72 Query: 74 FASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLI 133 F L V + G ++ T+ L +A H LV DD + Sbjct: 73 FLQQLGEGVARELRGGTSLVRTLYGGGLPEDPLPLLLADLSAVAGDH---VLVFDDLRPV 129 Query: 134 T-NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAK 192 + + + + E + + +R L++ + EI Q+L F +E Sbjct: 130 PGDSPVADLIGRLAESAGERTHIYIAARAALPFPTVRLKLSEGAGEITEQELRFRREEMA 189 Query: 193 QFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ-NTHSAHKSARRLAGINASHL 251 + P AA R+ GW AL L+ +ARQ +A + LA L Sbjct: 190 AWLTAATGEPPSAAVLDRVEQLTEGWPAALVLLTEAARQAGGLAAIPAVDDLAAPLPEDL 249 Query: 252 SDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRM 311 + YL DEV++ +D A R F+ +SAIL + A + G + + ++ + R L + Sbjct: 250 TAYLADEVMEGLDPAVRSFMEESAILNFVTPAACEALLGRRDSEQMVDRLCRVHRLLVPV 309 Query: 312 DDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDAL 371 + Y L FL + L + R Sbjct: 310 GPG--VYRYPSLLQRFLLGYLRTRGPDVLNRLSRMC------------------------ 343 Query: 372 MLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTL 431 A + E L + + L + P + L +A + + + + Sbjct: 344 --------IAPAWLAEPEPDRLSQMAEHLSPAQKAQYPWVALCEARYLLNAGQAERAMGI 395 Query: 432 LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA-ERLAKLALEELPPGWFYSRIVA 490 A + + + L + + + E LA+ A P + ++A Sbjct: 396 ARLALRSCEQAGDRRGVFYSHVLLSDCLFLRRDFARSQEHLAEAASALQPEFRDDAALLA 455 Query: 491 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 550 A ++ + + L + +G ++ Sbjct: 456 LKQAVLAYMTGAGPEELEAGLRTALVLYVESGDLIGEAEVLDVLGMVRVRRGDYRSGLAL 515 Query: 551 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 610 E++ +L+ + + L A R +A +R + Sbjct: 516 LERSSRLLRAAGIPEHETGLNL----AWACLESGRFQDACRLSRPLATGSRKVGRRAYAL 571 Query: 611 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 670 ++ L G+ A + + + + N +++G+ AA Sbjct: 572 LCLLIAHTRL--GEFTAASALVPLAHAAVE-ELGLPHLRAWLNAALAALHRLSGEAPAA- 627 Query: 671 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 730 + + + G+ A + + E + + Sbjct: 628 -----APDGPGPEGAHVPERVEAVMLHLFFTGDARAAAQIAAKTLETLQERATALERTLL 682 Query: 731 LLLLNQLYWQAGR---KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTL 787 L L ++ R + +A + L AL R G + E + + + N Sbjct: 683 SLGLAVARFRTARTESRREAVQALQRALAECQRRGTDFFVLHEWQLALAVVVYGLAYNVQ 742 Query: 788 PELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 P + R+ E+ R + + + L Sbjct: 743 PAYCVNLLMRMAGELPASVRLRGIRLAGSELRAL 776 >UniRef50_D1BFN8 ATP-dependent transcriptional regulator n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BFN8_SANKS Length = 846 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 162/898 (18%), Positives = 309/898 (34%), Gaps = 77/898 (8%) Query: 8 SRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIGWYSLDE 66 + P H V + + L + + ++ +P GYGK+ +S+W + W + Sbjct: 10 APPRVPTHLVPKPDVYDTLETGSA--VTVLRAPQGYGKSAHVSEWLRRTGHPAVWMTARP 67 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 D + F + L+ + A + A + A + L W +P LV Sbjct: 68 TD-VADEFWASLLELLVHAGVADASAGANEAAEPAAA--------VRDALTRWPTPFVLV 118 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +D + + ++ +R P + LV+ S ++ R+ + + Q LA Sbjct: 119 VDQLEAVRAARVDTALAQMVRASPA-VRLVLCS-HISSDPEHLARLGMDTVFVEGQALAL 176 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 TH E + L + + +C D+ GW ++ + S+ + L + Sbjct: 177 THPEVAR-LAISLDAVVADGVVRDLCHDLWGWPAPIRGLLASSVGSGEVPRADWSTLGSL 235 Query: 247 NASHLSDYLVDEVLDNVDLATRH-FLLKSAILRSMNDALITRVTGEENGQMRLEEIERQG 305 + +++ +T F++++ ++ + L ++G E L +E G Sbjct: 236 FGNR-----------SIEGSTGSLFVVRTTVVEELTVELARSLSGTETAGHLLATLEAAG 284 Query: 306 LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHAL 365 L R G + Y PL + +++ + + HR AA+ P A+HHA+ Sbjct: 285 LARSRPSPQGRVYTYMPLLRSLSTTSEWTQVSELVTDAHRTAAQVLADT--PERALHHAV 342 Query: 366 AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRY 425 +A D + +I +W ++ + L ++L LP P+LV ++ L++ ++ Sbjct: 343 SARDWERVVEIADA-SWVHLVMTDPAALADALSRLPGRWFQRMPRLVTVRDVLLEDRNDT 401 Query: 426 GEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY 485 ++ E+ + + A PD A LA + L + Sbjct: 402 IVALSVPWPDPDEVVEESALRDVVGVAVGQIVAARRARRPDLAGDLATRMVAALRDSDGH 461 Query: 486 SRIVATSVL-------GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 R +L G G+L + + D+ A + + + Sbjct: 462 YRAGTEDLLPFLLLHAGVAQLVAGDLQAATDDLLACLWAGTGSDLEFVARNAAETVALLD 521 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 +G Q A E A L M A L L AE Sbjct: 522 AVRGSNQRAREHLATAATLTAPPRKIATTMDLVAPVAEALLAIDRLDLHAAEQHLEDLPA 581 Query: 599 VLSSYQPQQQLQCLAMLIQ--CSLARGDLDNARSQLNRLENLLGNGKYHSDWI-SNANKV 655 + + L + +GDLD A L G+ + Sbjct: 582 PGIVEYQRHAAWYVLDLARAMVRSLQGDLDGAMGTLEDAVVSAGSRLTVPSLAHTVLTSA 641 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 715 + G+ A N L A P ++ + RA++ L +P V Sbjct: 642 HARLLAVAGNPTRAQNLL--AAHPSLHDD--------AVLRARLSLSAGDPVAAVEICTT 691 Query: 716 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 775 R + LL+ + G A L A++ +R G + F + A+ Sbjct: 692 ALWRDSSGPRERVSVLLVDMEARDALGDAPGAASALRRAVQT-SRAGLLQPFALTDRALL 750 Query: 776 QQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSP 835 +++ + + A +L + + + D VE Sbjct: 751 ERVAE----------QVPEAAEVLALLRAASLPEHSVQDVPVVE---------------- 784 Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 L++RE VL + + S E +A L V+A T+K+ +R+LY+KLG R A+ +L Sbjct: 785 LSEREVAVLRELETTASVEVLARHLFVSANTVKSQLRSLYRKLGATSRGAALAEGARL 842 >UniRef50_C1CW78 Putative Tetratricopeptide repeat (TPR)-containing transcriptional regulator n=1 Tax=Deinococcus deserti VCD115 RepID=C1CW78_DEIDV Length = 1001 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 157/687 (22%), Positives = 251/687 (36%), Gaps = 55/687 (8%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG- 60 L S+ +R + V R RL A L+ A R+ L+ +PAG+GKTT ++ A G G Sbjct: 8 LTSSRRARWPIVQGAVARPRLRALLTQA---RVLLVVAPAGFGKTTALAAGAPGLGGPGA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LD D + A L AV+ A AS + A++ L Sbjct: 65 WLTLDADDADPQVLAGGLALAVEDLP----GGAGAAALLDAGASPRRVAARVADVLDACG 120 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRDQLLEI 179 + LV+D+ +T + + +R + + +LSR L + L + + + Sbjct: 121 A--LLVLDEAQHLTGSLASDVLRELVSGGAG--RVALLSRVPLTLPDLTRLETQGDVQHL 176 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + LAFT E + C L+ P A+ GW A++ +A +A Q + Sbjct: 177 SATDLAFTADEVGELL-CTLNVPATGADVRLAHAVTEGWPIAVRFLAQAAAQGRVHLRQL 235 Query: 240 ARRLAGINA-SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 A G L YL EV+ +D R L +S++ + L+ V + + L Sbjct: 236 ADLDGGEAQLGTLFTYLAQEVIGPLDPELRVLLTRSSVFEELTPELLEAVLNQPQARELL 295 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 + + G+FL R+ D G + HPL LR AAE+ + A + A G P Sbjct: 296 DALAGSGIFLTRVGDEG--YRAHPLLRAHLRAGL---PAAEVRTLSARGAAYFEATGRPR 350 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 A+ L +G+A +L + ++L+E SL LP ++ P L L Sbjct: 351 RAMAAHLLSGNAQRAAQLLSAYGRVWLRIGRVTLIERSLGRLPKEAWT--PDLHALAGDA 408 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 ++ RYGE A+A + + E QVA++ PD A +A + Sbjct: 409 LRLSSRYGEALAAYAQAAPLERALGE-----------VQVALDTVQPDLAWEALDIAEQL 457 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 P R + E L G+L ++ L R +L + Sbjct: 458 APAE---QRDTVRRLRAENLLNAGQLAEAVKLSPSLAGGVRYALRSGDLSRALTLA--LE 512 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 A+G A + H E L + FL + + A R E A E Sbjct: 513 AARGEAGGAR---------AAQNHREGLLLASFLHALLGEPDLAIRRAREGLA------E 557 Query: 599 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 658 P Q LA L +A G + AR L Sbjct: 558 GARLESPFVQALALARLGHALVAAGQTEQARQAYEDARVLARGVAGRLQVEPLMGL--SY 615 Query: 659 YWQMTGDKAAAANWLRHTAKPEFANNH 685 ++GD AA+ P +++ Sbjct: 616 LAGLSGDVGRAASLRAEAVMPTAGDSY 642 >UniRef50_Q6ACL7 Transcriptional regulator, LuxR family n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6ACL7_LEIXX Length = 838 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 178/908 (19%), Positives = 299/908 (32%), Gaps = 96/908 (10%) Query: 8 SRPVRLDHTVVRERLLAKLSGANNFRLAL-ITSPAGYGKTTLISQWAAGKNDIGWYSLDE 66 + + V+R L+ +L + I + G GKT L+ +W Sbjct: 8 TPEPGAEPLVLRRTLVRQLDEGERDSATIAIIASTGTGKTELLRRW-------------- 53 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 C + AS + +L L + ++ + +V Sbjct: 54 -----------------------CGNASNKRKYFDVASDSHWLDRLAWTLGQENA-VTVV 89 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +D + E + + + +V+ R+LP + IA R L IG +LA Sbjct: 90 VDAVERVEGNAEREQLLELVTNATSA--VVLSGRDLP-ITIAAPREERPHLSIGPGELAL 146 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 +EA + ++ +E + D G A L A +A + A Sbjct: 147 RFEEAYKLLRAH-GVTLDTSELLTLVDRADGRAATPTLAAETAARAESPGAAMATIR--H 203 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 + L+ LV +LD+++ LL + + S + L + G LEEI Sbjct: 204 SPGSLATLLVRRLLDSLNGERARLLLALSTVPSFDAELAAALAGCPYAIAALEEIGFGPG 263 Query: 307 FLQRMD-----DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 L R D D + + P F + L A E+H A E +A G A+ Sbjct: 264 LLNRPDSGADPDPHGRYSFEPSFRDGLMAEFLNRDATRFAELHSVATEWHIANGDIGLAL 323 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 AL +G A ++ D+L L + + +L AL +L +P LL A + Sbjct: 324 EQALHSGSADLIEDLLRRFGLGLVFSGSVLPVRNALAALKDRGVL-SPTTGLLGALVCSP 382 Query: 422 Q-HRYGEVNTLLARAEHEI--KDIREDTMHAEFNALR------AQVAINDGNPDEAERLA 472 Q V+ LA AE E+ + D A +ALR A A++ A + Sbjct: 383 QLTESVRVDHFLALAEDEVAPRSPERDVAAAALHALRSLDGPGADAALSTLEAAVARTTS 442 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + E P +R+ A V V G +L A + A+ +L Sbjct: 443 QPFGEGGPVAVLDARLFAEVVTARVYMATGHPDIALHRAVLAADGAEESHRPWLAMLALD 502 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQ---HLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + I A A + E L Q + + L A R E Sbjct: 503 TAANI---------ATSLANWALVGVLEHRIAGLNQTAVEPDSLVDAGIRLRAAYRSCEP 553 Query: 590 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA-RSQLNRLENLLGNGKYHSDW 648 ++ + + ++ + LA L R D R+ ++E L Sbjct: 554 YRVSQIDDIIAAQWRALDSVGVLAPRALRLLFRLDTAPDPRAVFEQMEQLFATSLRRRPE 613 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 + R + +AA T ++H + A + E Sbjct: 614 TLALSAFRFLDLAFLYRGRSAARNHVDTLTAAVGSDHLCA--FLGCAMLREGTPAQEAGA 671 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 LE + ++L LLL Q AG + AQ L A+ LA R F+ Sbjct: 672 AALETALTDGTRAHEGTNLVLGWLLLAQWSHNAGDDAAAQARLTQAVTLAERMRARRPFL 731 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 + +L + + Sbjct: 732 ARPSFVRLVSDRLGSFGAADGFAASIVEAAGAAGVRSEADGGPE---------------- 775 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 S LT RE +L + + QIA + V+ T+KTH+R++Y K+G + R +AVQ Sbjct: 776 -----SRLTARERDLLRELPLHQTVPQIAAKHSVSVNTVKTHLRSIYTKVGASGRAEAVQ 830 Query: 889 HAQQLLKM 896 A++L + Sbjct: 831 RARELGLL 838 >UniRef50_C3JUK9 LuxR-family transcriptional regulator n=2 Tax=Rhodococcus erythropolis RepID=C3JUK9_RHOER Length = 883 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 168/913 (18%), Positives = 320/913 (35%), Gaps = 89/913 (9%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDIGWYSLDE 66 L ++ R+ L KL L ++ +P G+GK++LI+ W A + + W S Sbjct: 27 RTLATSIPRQALFEKLD--RRAALTIVRAPNGHGKSSLIASWLRAHLASERILVWVSAPR 84 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 + E F + ++ + A L F + L P+ LV Sbjct: 85 PSSTLEDFWAVVLDRIHAAG----------IALPDVDDLADPFTAVAKSLNALSRPVLLV 134 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRDQLLE-IGSQQL 184 + LI+ P + + + + NL LVV L G A + D E IG+ +L Sbjct: 135 LIRPDLISEPELDDQLIELLA-LCHNLDLVV---TLSGFGMFAEPYLLDTAHEVIGADEL 190 Query: 185 AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 FT + Q + + ++ +I G ++ + R + S + R + Sbjct: 191 LFTTADTAQLLE-QAGVHTAEGDAEQITSLTGGLPALVRAAVPAVRNSRDSNRE--REID 247 Query: 245 GINASHLSDYLVDEVLDNVDLATR-HFLLKSAILRSMNDALITRVTG--EENGQM----- 296 + DY+ D VL + + FLL ++ RS+ + + + Sbjct: 248 MNIVQAIDDYVTDSVLAAAERVKQHEFLLATSFGRSITVDIAAMLFESQRPDAAETVHEI 307 Query: 297 --RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 RL +E G+ + + E + P + + A + + Sbjct: 308 RARLVTLETVGVLSRVETEADEKWKLPPAIRRSILAHHTRAGIDPSQRLSFLAHNR-LDK 366 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G + A+ +A+ A + + DI+ H ++ H+ L + +L+ +P ++ ++ + Sbjct: 367 GHHASALDYAVEAQNWTLAVDIVEQHWVTMIVHN-LDSVRSALQRIPAEAADKHSAVEAG 425 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE---FNALRAQVAINDGNPDEAER- 470 +A V LL + E+ + + + +++ + G A Sbjct: 426 RALFTMHPSERSTVVDLLPESPAELWALGAEAGAKDALSIACVQSIMLRMAGEYGLAAET 485 Query: 471 ------LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 524 L++ ALE P + G T S + A H V Sbjct: 486 TRRLSHLSRSALENNPEAVSAQLPLMRLQWAINFQLSGRFTESTIKARMAYHGALSHGVD 545 Query: 525 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 584 A S + G + A + + ++H + E +V+I A Sbjct: 546 FIARNSAGSAALNWALAGEPRQA-----THWSELEQKHPDPGGWLEPVVKIAGLTARALT 600 Query: 585 RLDEAE-ASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR--GDLDNARSQLNRL-ENLLG 640 LD + AR + L ++L + C A GD A L+ E Sbjct: 601 ALDTLDFDDARLALTELGLPSDTEELWAFVVYAHCQFALTSGDHTAALLLLHNAIEAHSK 660 Query: 641 NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 700 S + + G+ A + A P ++AR + Sbjct: 661 QYTATSFALPLLQSAEIDLLLALGEGNKATALAKEIADPAANP-----WTLASVARLRQR 715 Query: 701 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 760 +G+ E A + + + + + +LL+ + + G A + A +A++ Sbjct: 716 IGQNESAVALCHQFDWSG--VSYPRAQMESLLVQAVAHSELGEPRLASQEWSRACSIADQ 773 Query: 761 TGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVER 820 TG + F A ++L + + R L E ++ + Sbjct: 774 TGLLRSFATIASADVEKLESMAETK----------SRALAEFSKRSPAE----------- 812 Query: 821 LLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 PE + LT+RE +VL L+ G + +A +L V+ T+KT +R LY+KL V Sbjct: 813 -----SFPEFVHIVELTEREQKVLSLLALGMGSAAMADKLYVSVNTVKTQLRTLYKKLDV 867 Query: 881 AHRQDAVQHAQQL 893 +R +A+ A+QL Sbjct: 868 HNRNEAITRARQL 880 >UniRef50_C6LGQ2 Transcriptional regulator, LuxR family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LGQ2_9FIRM Length = 858 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 128/780 (16%), Positives = 255/780 (32%), Gaps = 77/780 (9%) Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQP--ENLTLVVLSRNLPQLGIANLRVRD 174 E + +VID H +T E I+ E + L+++SR + L + Sbjct: 146 EETEAERIVVIDGLHGVTLQTRQEEYAALIKKLLGQERVRLLLISRAPVPGWLLPLHMEY 205 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 + +EI + FT +E +++ + R +E + + + G AL+L+ + Sbjct: 206 RFVEIAERDFYFTQKEQEEYLE-RCGIYLEPDAAGQAWELAKGHPAALRLLVM------- 257 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 K RLA N + +L + V D + + FL++++I+ + L +TG N Sbjct: 258 --EKGDIRLAVKN---MWLWLENHVFDQWEAELQEFLMETSIVENYTRELAGMLTGRNNV 312 Query: 295 QMRLEEIERQGLFLQRMDDTGEW-FCYHPLFGNFLRQRCQWEL-AAELPEIHRAAAESWM 352 + E G F+ + G W + + +RQR + + + E+ ++ A + Sbjct: 313 DELISRAEELGNFMTKTGQDGVWEYRWG--MRQAMRQRIRKKYNSKEIQRLYSNAGLYYE 370 Query: 353 AQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 G EA+ D + +L +A L E +LP +++++NP L+ Sbjct: 371 MHGQIREALDAYETCRDEESVLRVLCANARRNPAAGAYFELREYYLSLPEETVMKNPALI 430 Query: 413 LLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLA 472 + L + E + L Sbjct: 431 SYMSMLHSILMDEEKSEYWYRMLEKYAGEHGGSEKREAKRWL---------------VYL 475 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 +AL + + + +L + T + + Sbjct: 476 DIALPHRGSAGLIPLLKSAGSMAAGHRT------ALPELSVTTNLPSLMNG--------- 520 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH-EFLVRIRAQLLWAWARLDEAEA 591 + +++ + A + + E +P+ + + RL E Sbjct: 521 GKDFCEWSKRDKELAASIGKAVSLALGEYGKGLVPLALAESGLEKGADSFEVMRLAEKGR 580 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 G L A+L ++ G+ + A + + N Sbjct: 581 LNAEGRVELC-------FVASALLAWLAILNGNAEYAEEIMETFRGRAKRE--APRMLPN 631 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 711 + + A WL K + ++ AR + G +E A +L Sbjct: 632 IDAFLCRIFLYQKRPAKTMEWLDTAPKEADTFCTLERFRYLTKARVYLQAGRYEAALGLL 691 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 EEL A ++ LLL ++ G + + + L + A F+ F E Sbjct: 692 EELLYYAEKMKRTYIKMEASLLLAVTLYRLG-REEWRETLQSCITCAEGYHFVRLFSREC 750 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 A+ L T ++ + + + + D Sbjct: 751 GAVPDLLEVGGIEWTDEGFQKQVLEECRKMAKLYPGYLCQGTDSEV-------------- 796 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 L+ + ++L + G S ++IA L + T+K H R Y+KLGV+ R A+ A+ Sbjct: 797 ---RLSGQAVRILRMQAEGISIKEIARRLGIREDTVKYHNRETYRKLGVSSRTAAIHEAR 853 >UniRef50_D1BJM9 ATP-dependent transcriptional regulator n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BJM9_SANKS Length = 868 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 166/896 (18%), Positives = 291/896 (32%), Gaps = 75/896 (8%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK--NDIGWYSLDEG 67 P V R +L+ L + L ++T P G GK+ +++WA D+ LD G Sbjct: 21 PRVPSWLVPRPQLVRALD--TDVPLVVVTGPPGGGKSVALAEWARASTDPDLRGVVLDLG 78 Query: 68 DNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFA--QLFIELAEWHSPLYL 125 R A L + V + E SL L + +PL L Sbjct: 79 GRPLSRVA--LWSQVSGLLLDAGLVGEGRLFSSGADSLRELADVRAFLVRAFTQVAPLTL 136 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 V+D + + + + + VV R+LP L + R+R + + + LA Sbjct: 137 VLDGADRLDDESAGDLVHVL--DAVPGVRAVVAGRSLPALASGDARLRLDVATVDGEDLA 194 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAG 245 T +E ++ A ++ + G A +++AL R G Sbjct: 195 LTVEETAAVLG------LDVAAATAVRRATGGSPLATRVVAL------------ERDQPG 236 Query: 246 INASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQG 305 ++ + +V + ++D T L +A ++ L T +TG ++ LE + G Sbjct: 237 VDPGQALETVVLAAVAHLDPETVDLLRCAATADVVSPELATTLTGRDDAPGTLEHVADLG 296 Query: 306 LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHAL 365 L F P+ LR + + A P EA+ A+ Sbjct: 297 LGTWVRAGADRVFVCTPVVRIALRAELRRTDPGRFARLRGLVARWCDTHDRPVEALEAAV 356 Query: 366 AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM-QSQHR 424 A D ++ ++ +H W F ++ ++ L L +P L+ + Sbjct: 357 DADDVDLVNTVVRHH-WRAFLSQYAGTVQPTVSPLGLTRLRHHPVLLFFIGLGHNAHRGG 415 Query: 425 YGEVNTLLARAEHEIKDIREDTMHAEFNALRAQ---VAINDGNPDEAERLAKLALEELPP 481 + L A + R E LR G D A A + Sbjct: 416 RLKALALFGLAITSARTARRSVPAEERLVLRVVEMIALRLTGRADAAAAAADDVARRVDE 475 Query: 482 GWFYSRIVATSVLGEVLHCKG----ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 R +L +V G + RS + E+ + L +L + Sbjct: 476 LEPARRAEIQDLLPQVHAHSGVTYLRVGRSRDAVAAFERGVGEASSDLATLPNLALLAGA 535 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 G LQ A A + L +A L + EA+ Sbjct: 536 HALDGSLQQAAAVVADAQTRTWPDGWVEGYTGSLLQVAQAVLALDALDVVEAQRRLDLLD 595 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 L++ + + + + LA G ++ H++ + + + Sbjct: 596 RHLATIEHWAPIAEVQAHVDL-LASGADAALTRLQATRDSHRQRRSKHAETEAALDATQA 654 Query: 658 IYWQMTGDKAAAANW-LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 716 + G A L P A ++ARAQ G E A L + Sbjct: 655 LLLVAAGRPYAVLTGDLGPVDHPAVA---------VSLARAQCAAGLPEQALGTLAGVAG 705 Query: 717 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 776 ++R+ + L+ + +A+ L A TG +S + Sbjct: 706 SSRA--SVRTRAEAALVEAVALLAVDHEVEARSALARA------TGILSVHGLHLPLALL 757 Query: 777 QLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPL 836 ++L TL E +++ E +L V +PL Sbjct: 758 PADDRVRLRTLAE-------------QSGTPVAVGLLAQDWPETMLPGGAV------APL 798 Query: 837 TQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 T RE +L + S S IA L V+ T+K+ +R LY+KLGV R A+ A++ Sbjct: 799 TSREAVILRELASTGSTSVIAERLVVSPHTVKSQLRTLYRKLGVTSRASALAVARR 854 >UniRef50_UPI0001C32364 transcriptional activator domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32364 Length = 1009 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 147/774 (18%), Positives = 258/774 (33%), Gaps = 32/774 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSG-ANNFRLALITSPAGYGKTTLISQWAAG-KNDI 59 LI KL+ P V R RL L R+ ++++ AG GKTT ++ A + Sbjct: 14 LIQRKLAPPPPPAPLVERPRLEQLLEALFERHRVVVVSATAGAGKTTAVAAAARRLTWPL 73 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAIC-ETMAQKRQYASLTSLFAQLFIELAE 118 W S+D D R +YL AA+ + + E +A +A L + A Sbjct: 74 AWLSVDRTDAAPGRLVTYLEAALARTRPELAGLASEALAAGIPHAEAVGLLIE-----AA 128 Query: 119 WHSPLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 +PL +V+DD + + P + +R+ P + + ++SR ++ + Sbjct: 129 GDAPLLIVLDDLERLGDAPEALAVIEALLRYAPPAVHVALISRRDVPSVLS-VPSGHVSA 187 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 I LAFT EA + + +AAE GW T + A + + Sbjct: 188 TISEGDLAFTVTEAAEALELLGERETDAAEV---VAATGGWVTGVLFEAWRSAAHVAG-- 242 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 G A L YL ++L+ +D A R FL+ +++L + A T + G+ R Sbjct: 243 ------LGGEADPLDGYLSSQLLEQLDPAARDFLVATSVLEEVTVARATAL-GQPAAAER 295 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 + + L + + G HP F ++L R + + E+ A +G Sbjct: 296 VLALRAAHLPVVW-GEGGTSMRCHPRFRDYLLARLERRGPDAVREVRVAHGRLLAREGHH 354 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 EA L AG + + + ++ E L AL + QL + + Sbjct: 355 EEATEVLLRAGADEQALTSAEQAIFPVIERLDGAVAERWLTALADVAPSGATQLTIAELA 414 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 L + Y + + + R L A + G D+A + A Sbjct: 415 LSLTGDDYRRGVRVADQLVELDERERLAHASDRAAGLMASLYAGVGRLDDAHAVLDAASG 474 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 L + + + ++ + + D A S + Sbjct: 475 GLGASTVRYMLRMYEGGPAQPRPEPGGEEADGVLSYADYFCGRLDKLGEAPLSRWAYAVA 534 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 Q + A +A +L + V ++L RL++A A G Sbjct: 535 RPWQIAARAALGHTAEALELYEAAQDAGVMTVSLAVCPGPEVLMDAGRLEQARALIAHGR 594 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLAR--GDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 + + ++ R D + AR+ L +LE L + I N Sbjct: 595 RLARATGALDLECVNRLMEGKLALRLERDPEAARAVLEQLERDLEPHAW-PFLIGPINAW 653 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN--IARAQILLGEFEPAEIVLEE 713 + GD AA L + + L+ +A AQ G+ E A+ + Sbjct: 654 LGAALLLQGDDVAALARLSRAVEVLVDADLILELPTAAGYLAEAQWRAGDEEAADRAADL 713 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD----AQRVLLDALKLANRTGF 763 + + L L + L + + A L AL G Sbjct: 714 ALDASHRLGSNHRLLQALTDYPAVVSRRIDAEQGADSAWHELGRALIAQGAGGL 767 >UniRef50_D1VQY9 ATP-dependent transcriptional regulator protein-like protein (Fragment) n=1 Tax=Frankia sp. EuI1c RepID=D1VQY9_9ACTO Length = 1174 Score = 217 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 156/996 (15%), Positives = 264/996 (26%), Gaps = 227/996 (22%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN---DI 59 + S+L+ P + R RL L A+ L ++ PAG GKT L++ W + + Sbjct: 19 LRSRLTPPALPVPHIPRPRLWELLDAASGQALTIVRGPAGCGKTALLASWYLARRDALPV 78 Query: 60 GWYSLDE-----------GDNQQE------------------RFASYLIAAVQQATNGHC 90 W +D D +L+ A++ Sbjct: 79 VWLQVDPATDVAPAPTGTDDGTPAATGLPPAAPAGGTPAARASLWEHLLVALRAHPEADP 138 Query: 91 -AICETMAQKRQYASLTSLFAQLFIELAEW-HSPLYLVIDDYHLITNPVIHESMRFFIRH 148 ++ + +L LA PL L++DD LI +P + + Sbjct: 139 DGALARLSPPVPGGASDLFCRELLDALAGGRPQPLVLIVDDLGLIGDPADIAGLE-LLAA 197 Query: 149 QPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAES 208 L LV+ R +P + R QL EIG + LAF E + + A + Sbjct: 198 GVAGLRLVLCGRRVP-VSAHRARAAGQLTEIGPELLAFDATETDRLLAA---MRVPAVAA 253 Query: 209 SRICDDVSGWATALQL-------------------------IALSARQNTHSAHKSARRL 243 + +GWA ++L ++ T A A Sbjct: 254 PGLLAATAGWAAGVRLAAAGLTTAADLAALTASQNLVPGARALVAVTAGTGPARVGAPAS 313 Query: 244 AGINASHLS------------------DYLVDEVLDNVDLATRHFLLKSAILRSMNDALI 285 AG + +YL E L + R LL++++L ++ L Sbjct: 314 AGGELADTDRDTGTEPPLPPAAFAPVAEYLRAEALATLPAPVRRLLLRTSVLDAVCAPLA 373 Query: 286 TRVTGEENGQM-RLEEIERQGLFLQRMDDTGE---------------------------- 316 V E L E+ + + Sbjct: 374 DVVAAEPAAGARLLAELAAGAILASPLATAPRAHGPAVTDAGYPGEFGYGTDSPGAGAVA 433 Query: 317 --------------------WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 W+ YH L LR+ + + A + E++ AA + A Sbjct: 434 GPAPADDGCSAGAVAVAPTSWYRYHLLLRGMLRETLRRDPAEDEAELNLRAALWYAANRR 493 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +A HA AGD L ++ L EL L + P + P+ + A Sbjct: 494 LVDAARHARRAGDWRYLACLVARGTVPLILQGELPELAALVGGFPDRAAGLGPECAITAA 553 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIR------------------------------EDT 446 L A + Sbjct: 554 LARVLAGDASTAGEHLELARSRLAAFPPAGSGGPVATRQGQAGPPDPADSAGGAASARRV 613 Query: 447 MHAEFNALRAQVAINDGNPDEAERLAKLALE-----ELPPGWFYS---RIVATSVLGEVL 498 + A+ + A G+ + A+ L EL P R +A + G Sbjct: 614 LLVAIEAVELRRAELAGDVEATLTAARRVLRVRVASELGPAAGLPDGLRPLALAARGRAE 673 Query: 499 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 558 +G L + ++ AR+ + + L + +G L+ A E A Sbjct: 674 LWRGRLETAEDALRVALAEARRARLGGATVGCLGALALGYALRGRLRQADEAAAGALAAA 733 Query: 559 NE--------QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 610 +P + L D A + ++ Q Sbjct: 734 IRLREVGPASPARAAMPAADGSAPGPGALALGAGSGDGAAVLGHAVAPRGAADDGQVDAD 793 Query: 611 CLAMLIQCSL----------------ARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 LA L + RGD + + G D ++ Sbjct: 794 RLAWLAEAPALTGVAEALLALATAAGHRGDTAGGLGWADLAAHAAGESGQLPDLVNLLRA 853 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 714 + + TGD AA A + A + G + A +L Sbjct: 854 W-LRLGRRTGDDLRAARRALAAFPAREAPALLALVREATQADLLVAGGNPDAALRLLGPP 912 Query: 715 NENARSLRLMSDLNRNLLLLNQ---------------------------------LYWQA 741 + R R + L R L Q + Sbjct: 913 DPAGRRERPAARLARGRAHLAQGDAAEAALAVAPLLRADGGGSASVVAACAISAVAAARR 972 Query: 742 GRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 G + A +L A LA + F+ G + Sbjct: 973 GDGAQAGGLLARAFALAQDELLVRPFLELGPEIMTL 1008 >UniRef50_B8HI06 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HI06_ARTCA Length = 859 Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats. Identities = 158/900 (17%), Positives = 289/900 (32%), Gaps = 79/900 (8%) Query: 10 PVRLDHTVVRERLLAKLSGAN-NFRLALITSPAGYGKTTLISQWAAGKND---IGWYSLD 65 P V R RL ++ + L ++ +PAG GKT +++WAA I W SLD Sbjct: 16 PRVPRTVVSRPRLTELIADLLMHHDLVVVRAPAGAGKTVALAEWAASGATPGYISWISLD 75 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 E + F +I + + A+ + + + + A + + Sbjct: 76 ERYTDRTAFWREII--LGTSLRVDEALRPRVIECADALMAGAEIRTVLRRFAPYIPETIV 133 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 VID L+ + + E M + ++ Q L VV SR L ++ +G Sbjct: 134 VIDRIELVHSQELLEDMVWVLK-QCRQLKAVVASRGRSFLESPSVGRSLDTAVVGGAPFQ 192 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAG 245 E + R P++ E + G + A + A + Sbjct: 193 LNLDETQDLLLMR-KLPMDPTE---LHAATEGNPLLTR--ATMSVYGQSGAGSIRASVQT 246 Query: 246 INASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQG 305 + L L L + T+ F++++ I S AL R+TG L+ +E QG Sbjct: 247 AVSDFLQASLAQSALGH---TTKDFMVRTCIPESFTPALAERLTGSGKIVDLLDSLEDQG 303 Query: 306 LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHAL 365 L + F Y P L++ + ++ + R + ++ G A+ A+ Sbjct: 304 LGMWFQTGDHRRFEYTPAVRALLQKSLKCLDPRDIDSLTRIVIDDDLSMGNAINALRQAV 363 Query: 366 AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM--QSQH 423 GD + I +H +L S+ + L+ +P L ++P L++ A Sbjct: 364 IIGDLDLASRIACDHHITLLV-SQAQAILGILEPVPLSRLRKHPALIMALALCHNATYAG 422 Query: 424 RYGEVNTLLARAEHEI--KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL---ALEE 478 R + + K + L + G + A +LAK A EE Sbjct: 423 RVKALEYFGSAVACAAIYKMSMDPGQRIWMLVLESTALRFAGKLEPALKLAKRSVEAFEE 482 Query: 479 LPPGWFYSRIVATSVL----GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 P L + + + L+ + +R+ + Sbjct: 483 SPYALKEQLAALEPTLYDQAAIAYLHDQQFSLAADLLAKALDASRRVRSMPSIYLTTGLL 542 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI--RAQLLWAWARLDEAEAS 592 + L G A +N + + AQ+ A R EA+ Sbjct: 543 AYALGLAGKTTEA----RVHLAWLNSASWPPGMLDGYWATTYRLAQVREAMDRQSYTEAA 598 Query: 593 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 + + + + L R ++ + L +S + Sbjct: 599 GYLDLINDEMQVSEFWPHIVTFRVLLDLHRTEVITGPATLEARIRQAHKAPLNSSGHIDL 658 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 712 + +R + G AA+ LR H + RA+I L +P++ + Sbjct: 659 DGLRAGLHLIAGQPQKAASALR----------HGRNDPRVLLMRARIALHLGDPSKTLQL 708 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 E + LLL + + S A+ A L + G G Sbjct: 709 TGFEGLEPRQ----ETHRLLLRAAAFQRLDDPSAAKDNSHAAATLMAQNGLTMT----GA 760 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 MAQ + F + E + + VP Sbjct: 761 LMAQ---------------------------EDLDALFPYVQEEHPDVPVPRGVVPPRGE 793 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 T+ LT RE VL + +A L V+ T+K+ R++ +KL ++A+ A++ Sbjct: 794 TASLTPRELVVLNAFARHKAANDVAAALNVSVNTVKSQRRSILKKLAAHSMEEALTIARR 853 >UniRef50_A7VDU4 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VDU4_9CLOT Length = 813 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 121/796 (15%), Positives = 266/796 (33%), Gaps = 63/796 (7%) Query: 109 FAQLFIELAEWHSPLYLVIDDYHLIT---NPVIHESMRFFIRHQPENLTLVVLSRNLPQL 165 +E+ E + +VIDD H +T + + ++ I E++ +++ R Sbjct: 63 ITAEDLEIPEETARKIVVIDDIHELTWEEDDELRNAIFNLI--IREDIWMILAGRCPVPP 120 Query: 166 GIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLI 225 ++ LR R+ I L ++ + + + R+ + G AL + Sbjct: 121 WLSTLRFREGFYIIDESMLIMDMPSILKYIELT-QMVLTEEQKKRLARETYGMPFALSVA 179 Query: 226 ALSARQNTHSAHKSARRLAGINA---SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMND 282 + + S + + +YL V DN D+ + FL+K +I+ + Sbjct: 180 TTMYYELGYENGLSDPEYDEYSRKVTEQMWNYLEFHVYDNWDIQMQDFLMKISIVDTFTI 239 Query: 283 ALITRVTGEENGQMRLEEIERQGLFLQR--MDDTGEWFCYH-PLFGNFLRQRCQWELAAE 339 L +TG + + +E G FL + + + + + LR+ + + Sbjct: 240 RLAEMITGANDAENLIEHARWMGNFLDEQMGANGEKIYKLRDHMRLSMLRRMNRKYTKEQ 299 Query: 340 LPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKA 399 + ++ A + G P +A+ A + IL+++A N + L++ A Sbjct: 300 IKNVYENAGLFYQLAGRPLQALEMYEKADAMERMVSILIDNARKSANSAYYYELKKYYLA 359 Query: 400 LPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVA 459 L + + ++P+L+ + L E + + A Sbjct: 360 LSEEIVKKSPELMCGMSMLQSLLLNPEESERWYSELQ----------------------A 397 Query: 460 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 519 D + ++AK L L G + + + + + + + Sbjct: 398 FADSHQGSIRKVAKNNLLYLEIGLPHRGSADMISIMKNAY--------RLVFDRQATLGE 449 Query: 520 QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 579 + + +++ E K +L+ + + A+ Sbjct: 450 FSVTSNQPSMMNGGKDFCEWSR----RDRELAGKIGKLVE--FVLGKYGKGLINLALAES 503 Query: 580 LWAWARLDEAEASARS--GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 637 + + A + ++ + + +Q +L + G + A L R Sbjct: 504 FFEKGEDNYEVAVLANKGRMQAEAGGKIEQCFVADGILAWLHIINGKVQEAEEVL-RSFY 562 Query: 638 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 697 + + N G+ A W+ T + + + + R Sbjct: 563 EKAEKEGAVKLLPNIQTFLARCALYKGEWAEVNRWMDQTVDENVEFSIYDRFIYLTKVRV 622 Query: 698 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 757 I G++E A +L +L A ++ LL+ ++ G K+ + L +K Sbjct: 623 YIQRGKYEQAYSLLVKLQYYAEVMKRTYIQIECRLLMAITMYRMGNKA-WREELQAGIKE 681 Query: 758 ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQ--HHRHKFAHFDE 815 A F+ EG A+ L+ L + E + ++ + Q A Sbjct: 682 AADYHFVRVISREGAAVYPLLQALPFVPEEVEDDPKLIKKNRQYHRQVMKETESVARSYP 741 Query: 816 NFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLY 875 +++ + E +++ L+ G+S QIA +L + +K H+ Y Sbjct: 742 GYLKMGKAEVRISETG---------IRIIKLLAEGFSRIQIAEQLNMTEANVKYHMAQTY 792 Query: 876 QKLGVAHRQDAVQHAQ 891 +KLGV + AV A+ Sbjct: 793 KKLGVKDKAGAVMEAK 808 >UniRef50_Q1N3B3 Regulatory protein, LuxR n=1 Tax=Bermanella marisrubri RepID=Q1N3B3_9GAMM Length = 753 Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 130/873 (14%), Positives = 278/873 (31%), Gaps = 151/873 (17%) Query: 35 ALITSPAGYGKTTLI---SQWAAGKNDI-GWYSLDEGDNQQERFASYLIAAVQQATNGHC 90 L+ + G+GKTT + + +N+ S+D + + F ++ + Q + G Sbjct: 12 TLLVAGPGFGKTTYLHEHAHLIQQRNEFSVHLSVDITEKKPHEFTKKVLGELSQVSTG-- 69 Query: 91 AICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQP 150 + +++DD H ++ + Sbjct: 70 ------------------------------QSISVLLDDVHHLSEKEFTFLFSTLVDKLS 99 Query: 151 ENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSR 210 + + + R +P + + ++ +EI Sbjct: 100 CDDHIYIACRRMPNISL----IQPDTVEIR-------------LLQE-----------PE 131 Query: 211 ICDDVSG-WATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRH 269 + + G W L+ ++N H A+ + L YL + D + Sbjct: 132 LLEKTEGIWP----LMFYMQQKNWHQANIE---------NQLDQYLESQWGDTLQEKDLS 178 Query: 270 FLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLR 329 L A ++++L + L + ++ +L + + P +L Sbjct: 179 SLSVLASFSEISESLWRNLAPNGLS---LSYVWQEYRYLLPNIAQQGHYRWVPEARQYLH 235 Query: 330 QRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSE 389 +R + E I AA+ W+ G ML D L ++ L Sbjct: 236 KRFPLTI-DERRTILERAADFWLRH-------------GSFQMLIDTLYDNHEELLT--- 278 Query: 390 LSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHA 449 +++ + R+ + ++ + ++D+ + H Sbjct: 279 ------------------YHSIIIPLVVALIFTRRFHQARYIIEQ----MQDVSTENDHK 316 Query: 450 E-FNALRAQVAIND-GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 507 E N L +A+ + + E LA +LE + VA V +G+L + Sbjct: 317 EVINILSNTLALFTVDDEERVEPLA--SLENMKLKNSVIHCVALVVSAYQSFYQGKLDET 374 Query: 508 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 567 + Q + A + + +G+ A + AF E + P Sbjct: 375 ARKARDALLYMNQRQQTYLASLTEMLLIACDKYRGYTAQAVQQLLMAFNSKEEN--TKDP 432 Query: 568 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS-SYQPQQQLQCLAMLIQCSLARGDLD 626 + + + L AE+ + ++ + + + + G+++ Sbjct: 433 SWQNYATGMIIMYYEKNDLKGAESICEKLMPHINNACSTEVIIHVYLYYARILDLTGNVE 492 Query: 627 NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH--TAKPEFANN 684 + L RL+ L G Y + R+ D + E N Sbjct: 493 KSFEYLVRLQRFLSMGNY-PRYQGKLVAERMRQAVAKNDLKSIQYLNEKFNIDSLEIDQN 551 Query: 685 HFL----QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 740 + + A + ++ +L+ L + + +W Sbjct: 552 SLILDVRDYLSQTWAMQLLYESCYQDVIDLLQPLRDELLKHDYHVRALVAEAQIIVAHWY 611 Query: 741 AGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILR 800 G+++ ++ +L A++ F E + L LI + L +Q+ L Sbjct: 612 LGKRARSKILLKQAVQFYGWLLFNRTLFDEAPLIIPILSNLISMGELQPSKQY-----LS 666 Query: 801 EINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGEL 860 ++A ++ R + LT +E +VL L+ G SN++IA ++ Sbjct: 667 TYRNILFPRYATDADDITARY------------NELTNKEKEVLMLLAQGLSNQEIADDM 714 Query: 861 EVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 VAATTIK H++N+Y+KL + R AV + ++ Sbjct: 715 AVAATTIKWHLKNIYRKLSLDSRSAAVAYMHRI 747 >UniRef50_Q0K4A1 Transposase or inactivated derivative n=1 Tax=Ralstonia eutropha H16 RepID=Q0K4A1_RALEH Length = 588 Score = 204 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 5/234 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KN 57 ++ +K+ P + RE L+A+L + R +I AG GKT+++ W Sbjct: 356 VVGTKVLPPHGTGQLMPREALMARLMQSRRHRCVVIQGQAGSGKTSVLVAWRKAMISFGY 415 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 D+ W SL DN RF YL A++ ++ + + +L L EL+ Sbjct: 416 DVCWLSLSVEDNDPARFLDYLFASIAESAPTVAGKVQEVGAGHDGETLELRIIALVQELS 475 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 L L+IDD H +++ I +++ + + P L + V SR +L + LR+++ L Sbjct: 476 RRTRDLVLMIDDLHHVSDSRILRALQLLLDYAPPQLHVAVASRTALELSMERLRLQNLLA 535 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ 231 E + L F+ +E+ +F RL S I A+++ + + GW LQL+A+ R+ Sbjct: 536 EFDMRDLRFSPEESARFLLDRLGS-ITPADAAAMHELTDGWVAGLQLLAIGLRK 588 >UniRef50_UPI0001914156 transcriptional regulator MalT n=4 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001914156 Length = 185 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 168/185 (90%), Positives = 176/185 (95%) Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAE 349 GEENGQMRLEEIERQGLFLQRMDDTGEWF YHPLFG+FLRQRCQWELAAELPEIHRAAAE Sbjct: 1 GEENGQMRLEEIERQGLFLQRMDDTGEWFSYHPLFGSFLRQRCQWELAAELPEIHRAAAE 60 Query: 350 SWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 SWM QGFPSEAIHHALAAGDA MLRDILLNHAW LFNHSEL+LLEESLKALPW+SLLENP Sbjct: 61 SWMEQGFPSEAIHHALAAGDAQMLRDILLNHAWGLFNHSELALLEESLKALPWESLLENP 120 Query: 410 QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 +LVLLQAWLMQSQHRY EVNTLLARAE EIK + + T+HAEFNALRAQVAINDGNP+EAE Sbjct: 121 RLVLLQAWLMQSQHRYSEVNTLLARAEQEIKGVMDGTLHAEFNALRAQVAINDGNPEEAE 180 Query: 470 RLAKL 474 RLAKL Sbjct: 181 RLAKL 185 >UniRef50_Q5Z0R6 Putative uncharacterized protein n=1 Tax=Nocardia farcinica RepID=Q5Z0R6_NOCFA Length = 657 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 105/561 (18%), Positives = 181/561 (32%), Gaps = 43/561 (7%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLA---LITSPAGYGKTT---LISQWAAGKNDIGWYS 63 P + L A+ A A L+ PAG GKTT +++A + + Sbjct: 16 PEATGRPLFSPALPARFDRAIAASAAPIILVVGPAGSGKTTFAQACAEFARPGTRVARLT 75 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFI--------- 114 L N A+ L + AT A+ AQ A+ + Sbjct: 76 LTPALNDPTALAAALDTSATAATPRADAVRRAPAQPEYPAATGTPSTAPAAAPHPADARW 135 Query: 115 -----------ELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLP 163 E + LV+DD H +T+P + + T V+ +R+ P Sbjct: 136 RRRPAPRNTRGENRTRTAETLLVLDDAHHLTDPRALACLARLLHTAAPATTTVLTARHTP 195 Query: 164 QLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQ 223 L +L I + L F R + AAE + + GW + Sbjct: 196 PLPWHRWAATGRLTRITAADLRLDAARTAAVF-DRHGVALTAAELTAVHRLTGGWPALVH 254 Query: 224 LIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDA 283 L A + +A + ++D+L +EVL + R FL + + Sbjct: 255 LAAEYLDTHRDY-RDAALGMLEHAPRPVADFLAEEVLGGLAPRLRAFLAATCLPADFTME 313 Query: 284 LITRVTGEENGQMRLEEIERQGLFL-QRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPE 342 L + G + +EE+ER+ L +R+ + + Y PL L + +P Sbjct: 314 LAEELAG-DGAASAVEELERRDFPLRRRVREGVVRYSYPPLLRAELVGEVRRSQPDRMPW 372 Query: 343 IHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPW 402 HRAA ++A+ H L+ L L HA L +L L++ Sbjct: 373 AHRAACR-------GADALTHVLSVPGRPELVAFLREHAVRLVLDGAGPILFGRLESA-R 424 Query: 403 DSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAIND 462 +L++P L LL + + + D R A + Sbjct: 425 AWVLDDPFLALLHTADALVRGEPVPPPGPPRAS--RVVDERVLAALAAAVTIEHATGTGT 482 Query: 463 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 522 + A R+A+ P G G +G+ +++ +A + D Sbjct: 483 RDTLRALRIARR---PEPTGHTPLDYYLELSFGTAHVLRGDTNTGGRGLRRALVLADRMD 539 Query: 523 VWHYALWSLIQQSEILFAQGF 543 L +L + + G Sbjct: 540 AARLRLRALARLALAAMLDGD 560 >UniRef50_C3JEA2 Transcriptional regulator, LuxR family protein n=2 Tax=Rhodococcus erythropolis RepID=C3JEA2_RHOER Length = 921 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 166/913 (18%), Positives = 313/913 (34%), Gaps = 84/913 (9%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-----KNDIGWYSLD 65 T +R RLL + + L +I SP G+GKT L + W + W Sbjct: 68 AGRGATAIRPRLLGLMERSAG--LTVIDSPLGFGKTELAALWLTTLGQVPSRPVVWVPAP 125 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 + + +A +Q + A ++ ++ SL +P L Sbjct: 126 SHRMTPLEYWNTALAVIQDSLESLEAPPRM--REDPVGAIESLLDS-------SPAPFVL 176 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVL--SRNLPQLGIANLRVRDQLLEIGSQQ 183 V + L+ + + I P L ++V R+ L + ++RV + L + Sbjct: 177 VFNRIDLVEGDEVGRRIVDLIVRLP-GLKVIVTLQDRSATDL-LEDVRVDEYLC---AND 231 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L +T E+ F + + IC+ V+G ++ +ALSA + R+ Sbjct: 232 LRYTLDESTVLF-AEAGIHLPSGIVHSICERVAGVPVLMK-VALSAVAGLSEPSRGRERV 289 Query: 244 AGINASHLSDYLVDEVL-DNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 + Y+ L F A R++ + ++ + + + +L+ +E Sbjct: 290 QQRVDQAIHAYVSRTAPRSGKSLELFDFATTIAAARTVTPEIARVLSDDLDVEGKLDLLE 349 Query: 303 RQGL-FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 GL F + W+ + F++ R + E P + + + + A+ Sbjct: 350 SFGLIFRNGFEGEPSWYFAPSVRLAFIQIRAEQGDGFEDP--FQVLVDHALGTSDIAGAV 407 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL--- 418 H+AL + DIL H L L+ +L+++P D L NP +++ + L Sbjct: 408 HYALDGRKWTRVLDILERHWADLLV-DHTGLVRTALQSIPGDVLSSNPSILVGRDLLESR 466 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA--- 475 ++ Q G+ I +++ V G + + + Sbjct: 467 LRPQLINGDSLPTEPAELRAIGGSPHAHSLLNVGTVQSVVLRTSGKYQRSTEITRKLAHV 526 Query: 476 ---LEELPPGWFYSRIVATSVL-GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 L + G S++ A ++ G G+L + ++ Q A QH + Sbjct: 527 VYGLGDESLGALGSQLPALRLIWGVSHQLTGDLGDAAVELRLAYQGAVQHGPEFVLRHAA 586 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + G + A + + P H RA + L A Sbjct: 587 GNAALNSALIGDVAHATDWLHLESTHPDVSGWLGPPSHMGGAIARALVACDSVDLHAGAA 646 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN----GKYHSD 647 + + E ++ + +L + D + L R G+ + D Sbjct: 647 AMNALAE-VTPPGDLWAFAAYTY-TRFALLQSDPFSGLISLQRAVATHGHVNPCERSLGD 704 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPA 707 + A ++ ++ G KA A H ++ARA +L G A Sbjct: 705 ALLTAARIDLLLASGEGTKALEE---------SLAAPHTFAVVTVSVARAHLLTGSSSQA 755 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 + E++ + + L +LL+ + GR A +A L +G +S Sbjct: 756 LELCREIDWSGQYLTRF--RLESLLIECAALCELGRIPAAASTWEEARGLLETSGVLSAL 813 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 + +QL + A F E+ ++ Sbjct: 814 ATIPRDLIRQLEDRA---------------------EGSSSVVATFLESEAAQMY----- 847 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 P I LT+RE VL + G +IA L V+ T+K+H+R LY+KLG R++AV Sbjct: 848 PAAIVRVQLTKREMDVLVELGLGIPIGEIARRLFVSNNTLKSHLRALYRKLGAHSREEAV 907 Query: 888 QHAQQLLKMMGYG 900 A + ++G G Sbjct: 908 AAAHRH-NLLGSG 919 >UniRef50_C0GFG4 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFG4_9FIRM Length = 378 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 75/378 (19%), Positives = 136/378 (35%), Gaps = 2/378 (0%) Query: 522 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 581 + ++YA + + + L G L A E + E+ P L + +L+ Sbjct: 2 NRYYYASSTSFKLAVCLHNMGRLTEAEELIHATLKTAKEKDFLWAPQIGGLWVLLGELMR 61 Query: 582 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 641 L EAE G+ V ++P I ++ D+A + +E + Sbjct: 62 ERGSLGEAERCLERGLAVGKVHKP-MLGWNNLYKIALLFSQQKFDDALICIREIETINRE 120 Query: 642 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ-WRNIARAQIL 700 + A + + + A E +QG+ + Sbjct: 121 TNLPYIIMLAATTWQARILVVLEEWEKARELFSCAQLNEDNLVQIVQGKGVLTYTGILMK 180 Query: 701 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 760 + + A +L E A + + LLL L + G + A++ L AL+ Sbjct: 181 ENKDDKARKLLNRAAELALNGQDQKTHIELLLLKACLEEKTGNSAAAEQCLCTALETGFE 240 Query: 761 TGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVER 820 G+ F+ EG+ A +L+ + + + E+F E Sbjct: 241 CGYFQVFLDEGKDTAPVFYRLLDQKDKSTEITLSGELLQYARRVYQAISPDAGQESFKEE 300 Query: 821 LLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 L P L+ RE ++L LI G SN++I+ +L ++ T+K H N+Y KLGV Sbjct: 301 PLKLASSPIPGLVEELSTRELEILDLINRGLSNQEISEKLFLSVGTVKWHTSNIYGKLGV 360 Query: 881 AHRQDAVQHAQQLLKMMG 898 R A+ A++L + Sbjct: 361 KGRTQAIAMARKLNMLPS 378 >UniRef50_Q0SJC2 Possible transcriptional regulator n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SJC2_RHOSR Length = 312 Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 100/218 (45%), Gaps = 2/218 (0%) Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W ++D DN F +LI A+++ + ++ + + L ++ Sbjct: 3 AAWLTIDTDDNNVVWFLGHLIEALRRVRPELSQDLGQVLEEHGDRAQQYVLTNLINDIHA 62 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 + +++DD+H +T P ++ + + + +L VV SR L ++ +RVRD+L+E Sbjct: 63 GGDRVAVILDDWHRVTEPGTIAALGYLLDNGCHHLQFVVTSRTQTGLPLSRMRVRDELVE 122 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 +G + L F E+K+F + +E R+ G ALQ +LS R Sbjct: 123 VGPEALRFAPDESKRFLVDVNGLVLADSEIDRLTASTDGSVAALQPASLSLRDAKDP-RL 181 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAI 276 L+G + + +YLV+ VLD V+ FLL ++I Sbjct: 182 LIDHLSGRH-RTIGEYLVENVLDAVEPRILEFLLATSI 218 >UniRef50_B4RG06 Transcriptional regulator, AraC type n=1 Tax=Phenylobacterium zucineum HLK1 RepID=B4RG06_PHEZH Length = 826 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 140/871 (16%), Positives = 278/871 (31%), Gaps = 82/871 (9%) Query: 34 LALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAIC 93 + ++ +P G+GK+ ++++ + Q T Sbjct: 24 IVVLCAPPGFGKSEVLTR---------------------------AQGLIQNTPSASIRR 56 Query: 94 ETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESM--RFFIRHQPE 151 AQ R + + + + +++D I E++ RF + P Sbjct: 57 FDRAQHRLAPDAAA------EAILQAGADQLIIVDGLQGADRGAISEALSVRFPSQDAP- 109 Query: 152 NLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRI 211 L + +L L +A L I + L + E + P + Sbjct: 110 --RLWLSIHHLKDLALARLVADGAATIIDWRSLKLSDGELR--LRLARVPPRFKRVVGDL 165 Query: 212 CDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFL 271 W A L++ A+Q A + AS L Y+ E+ + L Sbjct: 166 GRA---WPAACSLLSRWAQQAPPDEADWEVP-AILAASGLDGYIEQEIAPVLSSEELEAL 221 Query: 272 LKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQR 331 + ++I ++ R G + + ++ G P ++L R Sbjct: 222 IHASITETIEVD-ADR-RGVTRSHEQQAIMRASSKIAGLIERQGSKLIVQPALRHWLTTR 279 Query: 332 CQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSE-L 390 + + E AA + +G A +AG + ++ + L + Sbjct: 280 FEELPSHRQVESLAHAAREFEGRGDLVVAARLFRSAGREAEIERLIADRGSLLIWMTHGF 339 Query: 391 SLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE 450 + E + L +P L L++ ++ R E L A + + Sbjct: 340 PAIRELVDQAGDILLSRSPILQLMRCIVLMKTGRISEAQELFATIDADACAQTPSLERDH 399 Query: 451 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLAL 510 + + + A+ + + +++ + + +LA Sbjct: 400 EVVRITLLTYGCVLQRDTDLDRFHAIVARSVDEPDWKSLLSTLACILHTQRARFDSALAN 459 Query: 511 MQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 570 + AR D + L+ + ++ I AQG L+ A A + ++ E Sbjct: 460 LIDARVHARSADSRYNLLFLSLHEANIHLAQGDLKKARAALNDARRRWRQEFPEDRGAET 519 Query: 571 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM-----LIQCSLARGDL 625 + + A L + +L A AS R + + + A LI G Sbjct: 520 VMSALAASLEYELGQLSSARASVRKSAYRMPDSEAWFDVYAAAYEPMARLIAVDHGLGPA 579 Query: 626 DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 685 A + R G + + + A + W TG P Sbjct: 580 IEALADQRRRLIAQGLPRVAALLQNLAIILAGEAWLRTGSAPPDPP---GDLAPLDVAPS 636 Query: 686 FLQGQWRNIARAQILLGEFEPAEIV--LEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 743 + + + ++ARA + + + A V L E++E++ S RL R L L Sbjct: 637 WQEEEAHHLARAWLRWRQGDAAAAVRGLREVSESSESRRLARSTLRYQLALAAFAAHESN 696 Query: 744 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREIN 803 DA L A+ LA G ++ + + R + Sbjct: 697 P-DADAELRRAIVLAADLGARQ-----------------------AVQHVMSPVVARAVA 732 Query: 804 QHHRHKFAHFD-ENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEV 862 + A D + F+ L + E + L+ RE VL + G S++ I L++ Sbjct: 733 RLGEAAPARSDLKRFISTLQSSSRAAEGSKHPLLSAREIDVLKALSEGGSDKVIGRMLDM 792 Query: 863 AATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 + ++ H++++Y+KL V R AV A++L Sbjct: 793 SEHGVRFHLKSIYRKLSVHDRLAAVHRAKEL 823 >UniRef50_C1XPW9 ATP-dependent transcriptional regulator n=2 Tax=Meiothermus RepID=C1XPW9_9DEIN Length = 920 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 125/677 (18%), Positives = 229/677 (33%), Gaps = 73/677 (10%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNF-RLALITSPAGYGKTTLISQWAAGKNDIGWY 62 S+L P V RERLL L + ++ + AGYGK+TL++ + W Sbjct: 7 KSRLLPPRTARE-VRRERLLHTLRQGFPKSPVLVLAAGAGYGKSTLMASYGG-----LWL 60 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP 122 SL E +L+ A + I + + + +L + +E P Sbjct: 61 SLGEEAKDPVVLGWHLLEAYRPQLENPGEIEQALERGA-----WTLAGEALLEEVSALEP 115 Query: 123 LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 LV+D+ + +R + NL++ +LSR V ++ IG Sbjct: 116 HTLVLDEAQRAASREAVAFVRTLAQS--PNLSVAILSRRAAP-----WEVLGRV--IGEA 166 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 +LAF EA L+ + A E R V GW + L R Sbjct: 167 ELAFDPNEAL-LLARALTPELPAFEVERAHSLVRGWPLG---LRLLLRAMRRGIQPEEAF 222 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 A +A+ L YL L + + ++++L + G + + E Sbjct: 223 YAHPDAAGLLAYL----LPGLPEEVQKRAARASVLGEFGPEEA-ELLGIPDVDL---EFY 274 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIH 362 + L L+R+ G +HPL L + AE + AA++ MA+G A Sbjct: 275 AEDLLLERV---GSRLRFHPLVRRALMGTLE---PAETRSLLSKAADAAMARGEGVRAAG 328 Query: 363 HALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQ 422 + L AG D+LL S + + L +P + P+L+ L+A ++ Sbjct: 329 YLLEAGRLGHAADLLLQQGESWLASGLMHTVLGLLDRMPDALVRARPELIYLRAEALRHA 388 Query: 423 HRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG 482 RY + A + + +++ ++ P +A A + P Sbjct: 389 GRYAQAEAAYQEARAAGVERAWLGL--------SRLYLDTVEPAKAWPYLDAAQAQFPEA 440 Query: 483 WFYSRIVATSVLG-------------EVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 R G VL G+ ++L L+++T R Sbjct: 441 ARALRAENLLNAGRVEEAVALGLTGPRVLLRSGQPVQALELLRETLSSPRSGVGITPVFP 500 Query: 530 SL-----IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL---LW 581 + ++ +L + A L + E + + A+L L Sbjct: 501 ADRPPKNHREDTLLLSLLEAVAGNAQAAMAAALRGRKQGEAMGSPFVVALAEARLGHALL 560 Query: 582 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 641 A R +EA A+ + + + +++ L + D A +++ +L G+ Sbjct: 561 AQNRWEEARAAYERALSLAEGGPGRLKVEALGGVAATG-----EDAAYTEMVQLARESGD 615 Query: 642 GKYHSDWISNANKVRVI 658 + R+ Sbjct: 616 AWVEAFITLTVAYARLR 632 >UniRef50_D2S488 Transcriptional activator domain protein n=2 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S488_9ACTO Length = 1025 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 143/836 (17%), Positives = 248/836 (29%), Gaps = 83/836 (9%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-----DIG 60 + + P+ +VR RLL +L RL + +PAG+GKTTL++Q + Sbjct: 6 RYAPPLADRGLIVRPRLLHRLHSRFERRLTAVVAPAGFGKTTLLAQAVQENTLSPLGEDR 65 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W + D A+ AAV G A ++ ++++ Sbjct: 66 WLTCQRDDTSLSFLAAGAFAAV-----GLTAPVPQDPREAAVTVAEAIWSA-------AP 113 Query: 121 SPLYLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L L++DD HL+ + + P N +V+ SR L + L + + + Sbjct: 114 RHLALILDDVHLVRPGSPGGHFVAELVEELPRNGHVVLASRPPLPLRASRLLASGEAVVL 173 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 G +L F +E F R P + DV GW +L A + Sbjct: 174 GETELHFAREEMAAFAASRQVPP-------DLLRDVGGWPALAELTATA----------- 215 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 +S Y+ +E+L + R L + +D L + G + + Sbjct: 216 -------GPDAVSGYVWEELLSRLSPERRRALSVLVAVGGADDELAAALLGPD-----VR 263 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 E + W+ H L+ L R +L + R A +G + Sbjct: 264 LEELLEGLPLVVRGPSGWWSLHGLWSAILAHRL---DPGQLAQARRTAGLVLARRGRYHD 320 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ AG +R +++ +LE L LP D L+L Sbjct: 321 AMELLADAGAWDDVRRLVVEVCEVGTPLVPPDVLEVWLHRLPPDVQEGPEGLLLAANVAE 380 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL 479 + LL RA D+ F L A V + D E + Sbjct: 381 PTS--LASAEALLERAFALAPDVA----PVRFACLNALVEVGLRRSDRREMELHIERLTG 434 Query: 480 PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 539 + R L L + + Q A + ++ +L Sbjct: 435 LAARGHERAAGWIALFRGLLARTPAE----VRAQLATPALVAGTGLSPVQQWLRAHLMLL 490 Query: 540 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 599 G + A +A M + L RLDEAEA + Sbjct: 491 KLGDAEGAERVVRRALASAGPN------MAVLFRSQLVESLRMRGRLDEAEALLPDLLAG 544 Query: 600 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 659 + + + + + G D A L + + ++ A Sbjct: 545 IDPAKVLTSPETVTCAVVLLGLLGRDDQAGELLGAHRQAVADSSVAWAPVAGAVAEAAHR 604 Query: 660 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE---LNE 716 + + AAA + Q + +LL E P Sbjct: 605 VSLGQEAAAAEALRAVLRLDVARSRAVRQVSAAALPLQYVLLPEVRPRWDAAAPPGCFRP 664 Query: 717 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 776 + R + + L A ++ + VL G ++ + EG A+ + Sbjct: 665 ALQLARALVAIREEGSLEQVAGLPAEARAVMRAVLPVPWTAELALGMVASGLQEGHALVE 724 Query: 777 QLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 +L RA+ LR ++ A + L P +R Sbjct: 725 ELG-------------PRARPTLRALSSGGPAPVAATARRLLRELPAAPPARLELR 767 >UniRef50_A3DFE3 ATP-dependent transcriptional regulator-like protein n=3 Tax=Clostridium thermocellum RepID=A3DFE3_CLOTH Length = 291 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 13/238 (5%) Query: 7 LSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDE 66 S P V R RL K++ + L I + AGYGKTTL+ Q+A +ND+ W SLDE Sbjct: 33 FSLPKVPCAIVPRPRLTEKIAPPGSS-LTYIHADAGYGKTTLMMQYAGERNDVVWLSLDE 91 Query: 67 GDNQQERFASYLIAAVQQATNGHCAIC-ETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 D+ F +L A ++ + + + ++ + L + L L Sbjct: 92 RDSNMTYFLRHLEDAFRKKFPRFDFYATDLLPFAARDTFVSRALSALLCAIGR--RKLTL 149 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 ++DD H+ITN + + ++ P +LTLV+ R G+ L++ +++E+ L Sbjct: 150 ILDDVHVITNGATMDFLNRLVKSCPSSLTLVMAGRYELWSGLFRLKMEGRIVELTKADLC 209 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 F+ +EA++ + GWA LQ ++A ++ R+L Sbjct: 210 FSREEAQKLWGFF---------DEAAYTATEGWALVLQSYRVAAENGKLCLPQADRKL 258 >UniRef50_A7VGK0 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VGK0_9CLOT Length = 500 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 122/326 (37%), Gaps = 22/326 (6%) Query: 574 RIRAQLLWAWARLDEAEASARSGIEVLSS-YQPQQQLQCLAMLIQCSLARGDLDNARSQL 632 + A+ + EA I ++ + LA+ ++ L G AR + Sbjct: 194 IMLAEWYYQNNNCFEALILVTGTIPLIEQEKDMRCLFVALALQMKILLVNGQTKAARPLV 253 Query: 633 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ-- 690 ++ + S+ N + + G WL A P+ F+ Sbjct: 254 EKIRK-RIQITGWDELTSSLNAIECLGACYDGRLQDVERWLDDIA-PDENKGIFMMDMYA 311 Query: 691 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 750 W R I G++ A ++ +L R DL +L +Y++ Sbjct: 312 WMVKVRCYIQTGKYMAAYVLTHQLIALLIPGRRYMDLCECYMLSAIIYYKMKNMEGMCEE 371 Query: 751 LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKF 810 L A+ LA R G+I G M Q L +++ + EI + Sbjct: 372 LSKAIVLAKRCGYIRLLADTGNCMVQML--------TIYQKEYEEDSFISEIKELAYSVG 423 Query: 811 AHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTH 870 +F ++++ + E PLTQ E +V L+ G SN+ IA +L T+K H Sbjct: 424 TYFP-DYLKSPYEYYE--------PLTQMEEKVFRLMAQGLSNDDIARQLGKKTGTVKFH 474 Query: 871 IRNLYQKLGVAHRQDAVQHAQQLLKM 896 N+++KL V RQ+AV+ +++ + Sbjct: 475 SCNIFRKLQVPTRQEAVERGREIGLL 500 >UniRef50_C1RJL1 ATP-dependent transcriptional regulator n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RJL1_9CELL Length = 859 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 160/917 (17%), Positives = 309/917 (33%), Gaps = 107/917 (11%) Query: 17 VVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN----DIGWYSLDEGDNQQE 72 + R RLLA+L A+ R+A++ + G+G+TTL++QWA + + W + Sbjct: 1 MARPRLLARLDRAD--RVAIVRAATGFGRTTLVAQWADARRAAGEPVAWVGAPWHRDNPW 58 Query: 73 RFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHL 132 R AV+ A + + + + L L + + LV+DD Sbjct: 59 R-------AVRDA------LACELTARGVDVADAMWPEALATALDAAGTRVNLVLDDADG 105 Query: 133 ITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIAN-----LRVRD---QLLEIGSQQL 184 + +P + + + P L LV+++ + + L ++ + ++ L Sbjct: 106 LDDPDAVKGVAELLATSPA-LRLVLVTGPRDPILSSGAQHPVLTAVGHPLPVVTLTARDL 164 Query: 185 AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 FT E + ++ A + V GW AR LA Sbjct: 165 WFTADELRA-AVASWGHEVDEARLQELVTLVGGWP-------RYARAVLDDTRPDDPHLA 216 Query: 245 GINASHLSDYLVDEVLDNV-DLATRHFLLKSAILRSMND--------ALITRVTGEENGQ 295 A ++ D VL ++ D + A A VT + + Sbjct: 217 TAGAFAIAR---DVVLPSIGDSRLLDLAMLVAASGDPTPTTVRMALSAAGDAVTAQ-DTV 272 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHP--LFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 L ++E G+ ++ G +H L LR+ + +HR A + + Sbjct: 273 EILLKLEAVGMLIRNRSTGGPS-SWHAPALMLEVLRRELERRDPERAVAVHRTLARAALR 331 Query: 354 QG--FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 P A+ HA A D +L + L + ++ A+P + + L Sbjct: 332 AHPPDPRLAVEHAARAHDWTLLETCWHDFGTYLVATGGPA-VDAVYAAVPDEVAASSTVL 390 Query: 412 VLLQAWLMQSQHRYGEVNTLLARAEHEIKDIR-EDTMHAEFNALRAQVAINDGNPDEAER 470 ++ + + + L+ R E+ + E + A R A A Sbjct: 391 MMARTIARRGPDERADARELVLRTMTELGALALEGRWRSRTAAGRWTGAAAALVAARARG 450 Query: 471 LAKLALEELPPGWFYSR--IVATSVLGEVLH-----------CKGELTRSLALMQQTEQM 517 + AL + + + +G G+L +L L + ++ Sbjct: 451 DMRRALTVVRDTEIAAARGGIKGGTVGRSYWWFLVQAGRTALLDGDLGSALELPMRAYEL 510 Query: 518 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 577 A H + + + G L A + + ++ E + + A Sbjct: 511 ADPHRAPDVRAAAAGHVALVHSLDGMLVDAERWLVRHAEALD-PAWEDVVRDDAADVAEA 569 Query: 578 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 637 L AEA+ + + A ++ ++ GD ++ ++L ++E Sbjct: 570 MLATDRLDRTTAEAALSRLDVAVRAPDVTWPFVVRA-RVRYAVLFGDPESGLAELEQIER 628 Query: 638 LLGNGKYHSDWISNAN-KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 696 ++ + ++R G+ A+ L T G W ++ R Sbjct: 629 TRHAWLEDVGSVNRSLLRMRSELLLALGEFHRVADLLGQTDPT---------GVWSDVPR 679 Query: 697 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 756 A+ L +P + + R +SD L+L + + + A R A + Sbjct: 680 ARWHLLTGDPHAALRAAVLGGRRRRVNLSDRTNLLVLEAWAAHEVRQSALASRAFRTARR 739 Query: 757 LANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDEN 816 LA G + F + L +L L A+ I R + H Sbjct: 740 LAGEQGALRAFAHLPVPVRDALVELTGL-------PFTAEEIARLGSVGHV--------- 783 Query: 817 FVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQ 876 VP+ PLT RE VL ++ + ++A L V+ T++ + ++Y Sbjct: 784 ----------VPDSATLVPLTPRERTVLTMLNEYDTTREVADALVVSVNTVRKQVLSIYA 833 Query: 877 KLGVAHRQDAVQHAQQL 893 KLGV R+ A++ A +L Sbjct: 834 KLGVHDREAALRRAHEL 850 >UniRef50_Q6ACS4 Transcriptional regulator, LuxR family n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6ACS4_LEIXX Length = 845 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 162/936 (17%), Positives = 272/936 (29%), Gaps = 162/936 (17%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN----DIGWYSLD 65 P R H + R RL +L A L ++ +PAG GKT L++ W + + W +L Sbjct: 12 PRRPAHFLPRPRLTERLDTAA--PLVVVRAPAGAGKTVLLADWCTRRRSAGDTVLWVTLT 69 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 G +R A L AAV H A + + A P+ L Sbjct: 70 AGSAHADRAADQLWAAVAAQVGAHSA-----------SPADAFDAVRLALAGTVGPPVRL 118 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 +D Y + P + R + + + +R L + + +G L Sbjct: 119 TLDGYCPVRAPADPDIARLL--ETCPRVQVAIGTRALTSFEDVAVAASLDVECLGPDDLL 176 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAG 245 FT +E+ + D V GW +++ L+AR + G Sbjct: 177 FTAEESARLVDAIAGEDRPP------RPSVPGWEEGERVLPLTARLTGVGIRR------G 224 Query: 246 INASHLSDYLVDEVLDNVD-LATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQ 304 + +++ L+ L FL + + + L R+TG ++ E Q Sbjct: 225 FDPHAVAEALLRRQLGERPCPELTRFLRVISSVSPCDSELARRLTGLDSPDPLFRAAEEQ 284 Query: 305 GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHA 364 GL G W G + R++ + AA + + +A P EA+ Sbjct: 285 GL--------GTWR------GEWPRRQFVLDPAAAVALARQRSAA------EPREAMR-- 322 Query: 365 LAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 L ++ +W +++ Sbjct: 323 ---------------------------------------------SLRVVCSWALETG-- 335 Query: 425 YGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF 484 V L A + + L A D ERL LE P Sbjct: 336 -DHVRALNAAVAAREPLLVSRVAREAWEPLSTVSA--TATVDLLERLGGEELERFP---- 388 Query: 485 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR---QHDVWHYALWSLIQQSEILFAQ 541 V + L + + R++ + + D L L +S Sbjct: 389 ----VIAVLYALALSTREQHERAVHWFALAARTLSKRGRDDDPGERLLVLCAESASFRLG 444 Query: 542 GFLQTAWETQEKAFQL---INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 G + E+ + +P L A + + A + G Sbjct: 445 GDTAASLRVTEEGMLTVAGLARSRDTGVPRIAELCAQLAITFHWGSWSERALEACALGAA 504 Query: 599 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 658 + S+ PQ + C+A+ RGD+ ARS L+ L + + R + Sbjct: 505 LGSTEHPQDRRHCVAVRAFVLAFRGDIVTARSALSALGPRTEDLTSSASLFDAL--ARSL 562 Query: 659 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA 718 GD AA A A H+ A A + G E ++ Sbjct: 563 VLIEDGDPEAAERMAVLAASMPRAPEHWAAVLH-CRAMALLFQGRPERCAAAIDVALAAC 621 Query: 719 RSLRLMSD-LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF--VIEGEAMA 775 S + L+R + G ++ A L D + + ++ G +A Sbjct: 622 GSRPASQEVLDRLAITRVLALLAVGDRTAADTALRDLFRAGCAPIGVRALRSLLAGNGVA 681 Query: 776 QQLRQLIQLNTLPELEQH--------------------------------------RAQR 797 E R Sbjct: 682 AISEPGAAARKAGETSSPDDVLHALVVAAALLACGGNADAAGAARRAMAVATERGLRTPL 741 Query: 798 ILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIA 857 L + A + E LTQ+E VL + S + IA Sbjct: 742 ALLPVVARLALLTAGGGDPEAEWPFALCMPAVEHPAVRLTQKEILVLHRLGSAATLADIA 801 Query: 858 GELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 E V+ T+KT R++Y+KL V R A+ A +L Sbjct: 802 QEFSVSVNTVKTQTRSIYRKLRVRSRDAALIRAAEL 837 >UniRef50_UPI0001AF081C putative LuxR family transcriptional regulator n=2 Tax=Streptomyces RepID=UPI0001AF081C Length = 937 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 156/938 (16%), Positives = 286/938 (30%), Gaps = 103/938 (10%) Query: 27 SGANNFRLALITSPAGYGKTTLISQ----WAAGK----------NDIGWYSLDEGDNQQE 72 + A L L+ PAG GKT L+ Q W + W + Sbjct: 28 ARAGAPALVLVEGPAGIGKTALVEQALTAWRGRTEGSAPRVLRVTGVAW-----ESDLPL 82 Query: 73 RFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHL 132 A L+ A T + + A + L Q A+ PL +++DD H Sbjct: 83 GVADQLVRACGNGTGNGTFLPDPTAPDAVLGTSRILLRQ--WTTAQETEPLVVIVDDAHW 140 Query: 133 ITNPVIHESMRFFIRHQPENLTLVVLSRNLP-----------QLGIANLRVRDQLLEIGS 181 + R E + +++++R+ P L ++ LR + L Sbjct: 141 ADAESLRAIRSTVRRMSNERVLVLLIARDEPYELYDMCRAHEDLPVSALRTLEFLDGCQD 200 Query: 182 QQLA---FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATAL-QLIALSARQNTHSAH 237 + T ++ + ++ + +C G L QL+ R+ H Sbjct: 201 AAVRPGPLTAEDVRTLAREVHGLTLDLPAARHLCRHTRGNPRHLTQLLRELPRETWHDWR 260 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAIL-RSMNDALITRVTGEENGQM 296 A+ V L + R + ++L + A T + G + Sbjct: 261 PELPAPTRYAAA------VRHRLAQCGESARRLVQACSVLGDDASLAEATELAGVADALP 314 Query: 297 RLEEIERQGLFLQRMDDTGEWFCY-HPLFGNF------------LRQRCQWELAAELPEI 343 ++E GL +D + HPL L R A + Sbjct: 315 AVDEARAAGLLTATIDPGRAQLSFTHPLVRAAVLTGIPLTHRAELHHRAVEVTADRGSRL 374 Query: 344 HRAAAESWMAQGFPSEAIHHALA----AGDALMLRDILLNHAW----------------- 382 A + A ++ + A AG+ + D L+ Sbjct: 375 AHRVAATSTADDALADELDAYAAERASAGEWSAVADTLVRAGRLSTVRAVREDRLLRAVD 434 Query: 383 SLFNHSEL---SLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEI 439 ++ ++ + L++ P D L + +L + R E + LA+A Sbjct: 435 AMIGAGDVPQATAFAAELESFPADILRG-----AVLGYLAIMRGRPAEADAFLAQAWERC 489 Query: 440 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 499 + R + A R A+ + A+ A+E P + I + +VLG L Sbjct: 490 ESARHTDLMARICQRRVLHALGRFDGRALVAWARRAVELADPDDPSA-IESQAVLGLGLA 548 Query: 500 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 559 G + + E A + + + + + A + A E A Sbjct: 549 ATGR---ADEALAAYETAAAKLPGGAQSQRFQLGRGWVDIALDAPEDARRRLEAAVPTGY 605 Query: 560 EQHLEQLPMHEFLVRIRAQL-LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 618 ++ + R Q L AW E A + + + + Q Sbjct: 606 RMGSTRISLWAQGWLARTQFALGAWPEALETVQRAAVHLAEVRIELCRPLVHWTG--AQI 663 Query: 619 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR---H 675 RGD + A + Y + + R + GD L H Sbjct: 664 RALRGDWEAAEHHVGEAH--AAPHHYEVMLVPSCLA-RAQVAEARGDYERVVEALVPLVH 720 Query: 676 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 735 + A A ++ G + A+ L + A S + R L Sbjct: 721 LPQRLSVGEPGFWSWPDVYANALVMTGRLDEADTFLAPHEDLAARRVRRSAMARLGLARG 780 Query: 736 QLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRA 795 +L G A++ AL A Q LR+ + + ++ Sbjct: 781 RLTAARGDIDTARKEFEQALAHLEHLPLPYDRARVNFAYGQTLRRAGKRREADTVLKNAR 840 Query: 796 QRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQ 855 + + + E L P L R LT +E V L+ +G +N+Q Sbjct: 841 DAYAALGARTYVERCDR--ELKAGGLHTARLTPGLAR---LTPQEQAVARLVANGATNQQ 895 Query: 856 IAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 A EL ++ T++ H+ ++Y KLG+ R + +++ Sbjct: 896 AALELFISVKTVQYHLTHVYSKLGIRSRSELAARFREM 933 >UniRef50_Q11ZX7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Polaromonas sp. JS666 RepID=Q11ZX7_POLSJ Length = 397 Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 81/407 (19%), Positives = 145/407 (35%), Gaps = 21/407 (5%) Query: 488 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTA 547 IV + C G + +++ + + +W + + L G + A Sbjct: 4 IVVYAYCDRTHKCNGRFAEAAQSLREAQVKFEDASSPYGLMWVRVISAASLLKAGRHRDA 63 Query: 548 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP-Q 606 A + L IRA LL+ + +A + + +L Sbjct: 64 LADSASALAEAPAFTPGAAGLAAMLRAIRALLLYERNQCTDAMVEVEAALPLLPHQGIID 123 Query: 607 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD- 665 + + ARGDL A E +G + + R + GD Sbjct: 124 AMIAGYVAASRLQAARGDLSAALDVAAEGER-VGLARGFARLQLTMVAERALLLLRAGDV 182 Query: 666 KAAAANWLRHTAKPEFANNHFLQGQWRNI-ARAQILLGEFEPAEIVLEELNENARSLRLM 724 KAA H P+ + + + + AR + G + A + AR Sbjct: 183 KAAQRMASDHGLLPQGPQTNLHRDKAERLCARLDLAQGRPDLALQWADSGIARARRSHQQ 242 Query: 725 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQL 784 L L+L + + G L+++L++A G++ ++ EG + LR+++ Sbjct: 243 HKLAELLMLRSLALARTGDTEGGHDALMESLRIAASNGYVRLYLDEGVELEGLLRRVVDK 302 Query: 785 NTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVL 844 P A+ +L + A E T+RE Q+L Sbjct: 303 PQSPTPAFSYARTLLLAAGAASARQDAAPAEQERP-----------------TERELQIL 345 Query: 845 GLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 GL+ G SN ++AG L + T+K H+ N+Y KLGV +R A++ A+ Sbjct: 346 GLLADGLSNGEVAGRLVLTEGTVKWHLHNIYAKLGVKNRTGALREAR 392 Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 63/352 (17%), Positives = 125/352 (35%), Gaps = 6/352 (1%) Query: 410 QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 +++ + L +HR ++ A AE + A A+RA + +A Sbjct: 47 RVISAASLLKAGRHRDALADSASALAEAPAFTPGAAGLAAMLRAIRALLLYERNQCTDAM 106 Query: 470 RLAKLALEELPPGWFYSRIVA-TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 + AL LP ++A + +G+L+ +L + + E++ L Sbjct: 107 VEVEAALPLLPHQGIIDAMIAGYVAASRLQAARGDLSAALDVAAEGERVGLARGFARLQL 166 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 + +++ +L G ++ A L Q + + R+ A+L A R D Sbjct: 167 TMVAERALLLLRAGDVKAAQRMASDHGLL--PQGPQTNLHRDKAERLCARLDLAQGRPDL 224 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR-GDLDNARSQLNRLENLLGNGKYHSD 647 A A SGI Q +L L ML +LAR GD + L + + Y Sbjct: 225 ALQWADSGIARARRSHQQHKLAELLMLRSLALARTGDTEGGHDALMESLRIAASNGYVRL 284 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA-RAQILLGEFEP 706 ++ ++ + ++ + + A Q A + + E + Sbjct: 285 YLDEGVELEGLLRRVVDKPQSPTPAFSYARTLLLAAGAASARQDAAPAEQERPTERELQI 344 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 758 ++ + L+ + RL+ L+ +Y + G K+ L +A A Sbjct: 345 LGLLADGLSNGEVAGRLVLTEGTVKWHLHNIYAKLGVKNR-TGALREARARA 395 Score = 46.9 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 5/270 (1%) Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 + R+ E L A+ + +D + A + G +A + AL E Sbjct: 14 HKCNGRFAEAAQSLREAQVKFEDASSPYGLMWVRVISAASLLKAGRHRDALADSASALAE 73 Query: 479 LPPGWFYSRIVAT---SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 P + +A ++ +L+ + + T ++ ++ + + + + S Sbjct: 74 APAFTPGAAGLAAMLRAIRALLLYERNQCTDAMVEVEAALPLLPHQGIIDAMIAGYVAAS 133 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 + A+G L A + + ++ + +L + R L + + AS Sbjct: 134 RLQAARGDLSAALDVAAEGERVGLARGFARLQLTMVAERALLLLRAGDVKAAQRMASDHG 193 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 + + + + + LA+G D A + + ++ + Sbjct: 194 LLPQGPQTNLHRD-KAERLCARLDLAQGRPDLALQWADSGIA-RARRSHQQHKLAELLML 251 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFANNH 685 R + TGD + L + + +N + Sbjct: 252 RSLALARTGDTEGGHDALMESLRIAASNGY 281 >UniRef50_A9BF82 TPR repeat-containing protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BF82_PETMO Length = 1055 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 98/741 (13%), Positives = 257/741 (34%), Gaps = 38/741 (5%) Query: 6 KLSRPVRLDHTVV-----RERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI- 59 K+ PV + RE+LL L + LI +P+GYGK+ S + N+ Sbjct: 2 KILEPVFKPLLIKPYHQYREKLLNSLINNKSKNYILIKAPSGYGKSITFSMYFNTLNEQK 61 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W S + + F ++LI + + N + + + +L + + Sbjct: 62 VWISCPQNYFDFDTFLNHLIYILFKTIN-LKIFEDNSQNTISFFTEEEKVVELLNGFSSY 120 Query: 120 HSPLYLVIDDYH-LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 +++ +D + ++ ++ + P+N+ + + + + + + + Sbjct: 121 TKEIFIFVDSFENVVFEGKNENLLKLLLNFIPQNVHFLFTTNQEFPIPLTKFAMANNVYT 180 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I ++L F+ E K + + + + G T + +++ + Sbjct: 181 IQEEELKFSFDELKNYISTK-KINLSEDNLLELYQLTDGIPTFINILSTY----IETIDL 235 Query: 239 SARRLAGINASHLSDY--LVDEVLDNVDLATRHFLLKSAILRSMNDALITR---VTGEEN 293 +A + +Y L+ E + R +L +++ + + + +E Sbjct: 236 KKYDALIDSAKKIDEYINLLTE---ALSEDLREYLKVFSLMNEIEPKICKAYFNLKSDEK 292 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 E++ + +++ D ++ + +F R + E +I++ + Sbjct: 293 IHESFEKLYDLNM-IEKKDPH--YYYMNEIFR---RTISKGIGEREKIQIYQTLFNIYQK 346 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 + H L D + D LNH+ L + S++++ L +P N +L Sbjct: 347 EQDYYGQFHCLLNMKDLEKVYDFFLNHSELLIK--DFSIIKKWLDLIPTSFFSNNIELYY 404 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 + + + + E + + I I ++ + + + ++ + Sbjct: 405 YRGVIEEKYSMFDEALSDYRLVKDNIHKISNKSILENIDTQIIGIYWHQEKYEKVIEMGN 464 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 L+ +P + S ++LG +L + + ++ + + W L Sbjct: 465 ELLKSIPNENYQSLTSLYNLLGTSYSYLSKLDEGKLYLNKAMELCERFNYTEMKPWLLNN 524 Query: 534 QS-EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 + I +G L++A + K+ + + + L L + D+A+ Sbjct: 525 LAYNIFLIEGNLESAEKYFVKSLKSFEDS--KDLYGKALLNANLTDFYIETQKYDKAKEH 582 Query: 593 ARSGIE-VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 ++ L + + + + + +L++A+ L EN K+ +N Sbjct: 583 LKAFENIYLETKNIAYLPVLKILQAKLEVEKNELNSAQKSLMEAENYSSRSKFLQ---AN 639 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG--EFEPAEI 709 V+ +Y + + + + K + Q + + ++L+ +FE A Sbjct: 640 YYFVQSLYLLKKDELKESFSTVEKAIKIAKTIFNEYQILNFELQKVRLLIHLKQFEKALS 699 Query: 710 VLEELNENARSLRLMSDLNRN 730 + ++ + A + L Sbjct: 700 HIGKIIQIATEGKAKLILTEA 720 >UniRef50_C4DRX9 Transcriptional regulator, luxR family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DRX9_9ACTO Length = 900 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 175/921 (19%), Positives = 294/921 (31%), Gaps = 97/921 (10%) Query: 22 LLAKLSGANNFR-LALITSPAGYGKTTLISQWAAGKNDIGWY------SLDEGDNQQERF 74 LLA A +ALI AG GK+ L+S++AA LD+G F Sbjct: 21 LLAAFRSAGAAPGVALIAGEAGIGKSRLVSEFAASLGGGARVVTGGCTQLDDGLA-YAPF 79 Query: 75 ASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQ------------LFIELAEWHSP 122 + L A V++ A + L A L + A P Sbjct: 80 VAVLRALVRELGAERVAEILPGPGRELARWFPELGAAQSGDKLRLYEEILTLVEAAASKP 139 Query: 123 LYLVIDDYHLITNPVIHESMRFFIRHQ-PENLTLVVLSRNLPQLG---IANLRVRDQLLE 178 L +VI+D H + E + F R+ + LV R+ ++ LR + + Sbjct: 140 LVVVIEDLHW-ADAATAELLGFLARNVNRPGILLVATYRDTEPATGPLLSELRRGGRTTQ 198 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + L T E + L E + RI + G ++ +A S + + Sbjct: 199 LRLGPL--TRHEVGRQLAAILGDRPEPDVARRIHERSDGNPLFVEALAQSGQSTPDAE-- 254 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG--QM 296 L+ V + A R L +++ + + +G + Sbjct: 255 ----------------LLLHVPRTLPDALRRVLRAASVA---TGEVAHALLATVSGNDED 295 Query: 297 RLEEIER---QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 L+++ R +G L +D G F H L + + + L E H AE+ Sbjct: 296 ALDDLVRPLVEGGLLLPTED-GYVFR-HDLIRHAVYEDL---LPGERKRFHARYAEALRD 350 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLF----NHSELSLLEESLK---ALPWDSLL 406 G PS+ H AAG D A + H E +LE L+ A+P + Sbjct: 351 NGTPSQLATHTYAAGQLGPALDAAWRAATAACDAYAYHEEARMLERILRLWDAVPDAAER 410 Query: 407 ---ENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQV-AIND 462 + + A Y A + + RE A R ++ D Sbjct: 411 LGLDRVAVGTFAAECCMLSGEYARGVDFATEALAIVDEDREPGRAAVLLEHRGRLRDRTD 470 Query: 463 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 522 + R A L P R++ + +G+ +L L + ++ R+ Sbjct: 471 ATGIDDLRRAHELLASEPDDNARGRLLGLMAMA---TYRGDADTALELARDALRIGRETG 527 Query: 523 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 582 + L G + + + +A + E L + ++ A Sbjct: 528 DPTVTVRGL-------LVVGGVTSNLDMLTEALSITEELRDHDLEI--TVLMYLAMHHAR 578 Query: 583 WARLDEAEASARSGIEVLSSYQPQQQL--QCLAMLIQCSLARGDLDNARSQLNRLENLLG 640 E+ +AR G++ + L + L G D A S ++ Sbjct: 579 QGDHGESARAARGGVDRAQRLGLARSRGTHLAGHLAKALLLSGHWDEAASVVDSALA--- 635 Query: 641 NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL 700 V + GD AA + L + + A + Sbjct: 636 -EGPPPMSRDILRAVAGHLAVLRGDTDTAAELAVDLESGDERLGTHLLHRHVFLCLAALS 694 Query: 701 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLL----LNQLYWQAGRKSDAQRVLLDALK 756 G+ + AE L N R+ R +L + AG + L+A + Sbjct: 695 EGDIDRAEEFLSRALSNPALRRVAPVEVRPVLAVGARIRHARLAAGEQPRHDVAELNA-E 753 Query: 757 LANRTGFISHFVIEGEAM-----AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFA 811 L + AM AQ ++ + A + A Sbjct: 754 LPVHGRLDKAWHDTIAAMTTGGTAQAWADVVAAWRALDQPYELALSLHIASQVTGNRAQA 813 Query: 812 HFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHI 871 + L P V TS LT+RE +VL LI G SN QIA +L ++ +T H+ Sbjct: 814 RESAELITALGAAPLVTGDGDTSGLTEREHEVLALIVEGLSNRQIAAKLYISPSTAGVHV 873 Query: 872 RNLYQKLGVAHRQDAVQHAQQ 892 ++ KLG A R +A A + Sbjct: 874 SHILAKLGAATRTEAATIAHK 894 >UniRef50_C8XB03 Transcriptional regulator, LuxR family n=3 Tax=Actinomycetales RepID=C8XB03_NAKMY Length = 982 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 168/981 (17%), Positives = 292/981 (29%), Gaps = 144/981 (14%) Query: 20 ERLLAKLSGANNF--RLALITSPAGYGKTTLISQWAA-GKNDIGWYSLDEGDNQQERFAS 76 +R A L A + L++ AG GKT +++ A + + W + + E Sbjct: 27 DRFRAALGRAREGEPSVLLVSGDAGVGKTRALTRMAEIARAEGAWVVVSHCVDLGEVGLP 86 Query: 77 YL------------------IAAVQQATN-----GHCAICETMAQKRQYASLTSLFAQLF 113 YL A + A G A + L A Sbjct: 87 YLPFTETLQQLRGRCDEVDQAIAARPALGRLLDVGLAEPAAGGADQAARGQLFDGIASAI 146 Query: 114 IELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLS-------RNLPQLG 166 PL L+I+D H +P + +RF I +VV S R P Sbjct: 147 GAGGRPDRPLVLIIEDLHW-ADPSSRDVLRFLIARLRTEPLVVVASYRTDDLHRRHPLRP 205 Query: 167 IANLRVRDQLLEIGSQQLA-FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLI 225 + +R + +L+ FT E QF P+ R+ G Sbjct: 206 TLSELLRHP--RVDHVELSPFTRDELAQFGAAITGHPLPDQVLQRVLRRSEG---NAYFA 260 Query: 226 ALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAIL-RSMNDAL 284 +A ++A L+ +D A + +++ R ++ L Sbjct: 261 QELLESGPDTAALPGSLADVLHAR----------LERLDPAVQALAGIASVAGRRVSGEL 310 Query: 285 ITRVTG-------EENGQMRLEEIERQGLFLQRMDDTGEWFCY-HPLFGNFLRQRCQWEL 336 +T V G L E + + W + H L + L Sbjct: 311 LTAVAGGRPDFADPGTVDAALREAIAHHVLAT---EDARWIVFRHALLAEAVYGDL---L 364 Query: 337 AAELPEIHRAAAESWMAQ---GFPSEAIHHALAAGDALMLRDILLNHAWSLF-------N 386 E+ +HRA + A G P+E +HAL A + + A Sbjct: 365 PGEVTGLHRAYQQQIAANPSLGSPAELAYHALRAHELPVALTASSAAAQEAVDVLAPAEA 424 Query: 387 HSELSLLEESLKALPWDSL---------------------------------------LE 407 L + A+P + Sbjct: 425 LRHLETVISLWDAVPDAAQRLGRDLVDVQMAAAAAASRAGRPARAAALAVSALDRSDEAR 484 Query: 408 NPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDE 467 + +L A+ + R E ARA + A A +A+ A+N + DE Sbjct: 485 SARLTPDAAYYLIDDQREREALDRAARALRVLDAEGPSADRARLLAAQARSALNCDHDDE 544 Query: 468 AERLAKLALEELPPGWFYS-RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 526 A+ +A+ A+ E + A + LG + + +L + L ++ ++AR Sbjct: 545 AQAIAERAVAEARAFSVPAAEADALTTLGVLAVNEADL--AGDLFGRSLELARSVGDLTA 602 Query: 527 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 586 L + + + G L A + + + L+ R + + L Sbjct: 603 ELRATHNLTANRYYAGDLTAAAQICAAGIDRARSTGVLWMGYGVGLLLYRELIRYLSGDL 662 Query: 587 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 646 E S E + + +L ++ARGD D L+R + + Sbjct: 663 RRPEPSMDMVPESVRTILSTIELYA-------AVARGDEDA----LDRGRAVEIDWSRDP 711 Query: 647 DWISNANKVRVIYWQMTGDKAAA------------ANWLRHTAKPEFANNHFLQGQWRNI 694 + + G+ AA W + + + L Sbjct: 712 MMALTSGGCTIDALTWAGEHQAAVDLTFRLTDFMSRAWNDYFLGGIWLSALGLAALADRA 771 Query: 695 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 754 + ++ G+ +L E L W A +++ R++ + Sbjct: 772 TQTRLTGGDLAGDLATGAQLLERMEQTARRGRPRGGQLGPEGRGWVARARAEYSRLIGEP 831 Query: 755 ---LKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFA 811 L A T F + E +L + + A LR A Sbjct: 832 DPDLWRAAVTEFAYGYRYEEARSRWRLAEALAARGDRSGATVEASTALRAAQDMGARPLA 891 Query: 812 HFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHI 871 + R LT RE +VL L+ +G +N QI L ++ T+ HI Sbjct: 892 AALIDLGRRARLDLPGS-TSSGGVLTGREEEVLRLVAAGLTNRQIGERLYISGKTVSVHI 950 Query: 872 RNLYQKLGVAHRQDAVQHAQQ 892 N+ KLGV R +AV A + Sbjct: 951 SNVLGKLGVGGRAEAVAVAHR 971 >UniRef50_C7QI16 Transcriptional regulator, LuxR family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QI16_CATAD Length = 998 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 154/920 (16%), Positives = 265/920 (28%), Gaps = 111/920 (12%) Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 R L + A L Q+ +A+ P+ ++ Sbjct: 91 EHGDLARLLEGLPPGAGEVPAPDRPPGARSAPDIDRFRLFQALRQVMASMAD--QPVLVL 148 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLS---RNLPQL---GIANLRVRDQLLEIG 180 +DD H +P + + F R L+V++ R P +A + I Sbjct: 149 LDDVHW-ADPGSIDFIAFLSRRPIAGPVLIVVAHRERQAPAQLRYALARDTDHGTVTRIE 207 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 L + ++ + R + + + G L L + Sbjct: 208 LGPL--SLADSARLLGDRNGTRRSVE----LHEKSHGNPLYL-LTLDRSNGYRRRPGDPN 260 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR--- 297 RR G +S L ++ E + + + L+T V Sbjct: 261 RREGGDASSRLEALILGETVTLSPDELAVASTAAVVGDPFTPELLTAVMAGPALSQVECA 320 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG-F 356 + + + L + G F HPL + + +IHR A +G Sbjct: 321 VNSLVSRDLIREVPSGPGLVFR-HPLVRRVIYDQ---SAPTWRVDIHRRALALLAERGAS 376 Query: 357 PSEAIHHALAAG-----DALMLRDILLNHAWSLFNHSELSLLEESLKALP--WDSLLENP 409 SE +HH + + A S + +L LP DSL Sbjct: 377 ASERVHHVEHCATAWSPEYETVLCQAGQEAMSTSPLTAAHWFGVALNLLPHNEDSLRRRF 436 Query: 410 QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 +L L A + R+ E LL + + +E L A G EA Sbjct: 437 ELSFLVARALGLGGRFAESRDLLHEILQDASEATMVN-RSEAVVLCAHAEQRLGRYSEAI 495 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 L + + L RI LG + + A + AR+ Y Sbjct: 496 ALLRAEVARLGTKTSSQRIGLCLELGLTALLANDYPAARADISWALDAARETGDRLYEAT 555 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 +L + G A + A +++ L + + R +A Sbjct: 556 ALAFSAFGEICVGHTDIARAAADSASAMVDGMPDSVLAGERETLCMLGWAEMLLERFSDA 615 Query: 590 EASARSGIEVLSSYQPQQQLQCLAM-LIQCSLARGDLDNARSQLNRLEN----------- 637 + G ++ L + + ++ G + A Q+ E+ Sbjct: 616 DRHLARGRAIVRRTGQSHGLPHVLLGQCLVAMFTGRMAEALEQVQNAEDAARLVGSDHLL 675 Query: 638 --------------------------------LLGNGKYHSDWISNANKVRVIYWQMTGD 665 L +S W NA +R GD Sbjct: 676 GIVLAIKAPIQVWMSPRGKGDAALAGARAATALFTGSAVNSWWARNALMLRGHAELTNGD 735 Query: 666 KAAAANWLRHTAKP--EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 723 A+ + P + + A I LG+ + AE + A L L Sbjct: 736 AASCVELVLRAGGPDLRMLGAPLVPEYAEILISALIRLGQTDRAEELARMAVVQAEQLDL 795 Query: 724 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI-----------SHFVIEG- 771 + L G A A+ + G + V+ G Sbjct: 796 PGQRGHAVRARGLLSALRGDHQSADADFTRAVAAFAQAGRLVEQARTAVFHARTLVMLGR 855 Query: 772 --EAMAQQLRQLIQLNTLPELE-QHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 EA+A R Q + + +R+ ++ E + + P Sbjct: 856 REEALATLARSTAQAAGCGAIWVRDELERVRGQVAGRAPGGCVQSAEETAAAVNDAPTNA 915 Query: 829 ELIRTSP---------------LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRN 873 TS LT RE Q+ L+ +G+SN QIA L ++ T+++H+ N Sbjct: 916 VGESTSAASRSGTHDSARVLTVLTDRERQIALLVGAGHSNRQIATRLFLSERTVESHMGN 975 Query: 874 LYQKLGVAHRQDAVQHAQQL 893 +Y+KLGVA R V A+ L Sbjct: 976 VYRKLGVASR---VALARLL 992 >UniRef50_D1BBT2 ATP-dependent transcriptional regulator n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BBT2_SANKS Length = 992 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 118/665 (17%), Positives = 221/665 (33%), Gaps = 60/665 (9%) Query: 252 SDYLVDEVLDNVDLA-TRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQR 310 YL V D +D R F+ + +L + +G + + + GL +Q Sbjct: 350 FAYL-RAVWDELDDQGMRRFVQHTGLLGAFTVDDAVASSGLRDSARHVGALLDLGLLVQD 408 Query: 311 MDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDA 370 D+ F Y + + E R A +QG EA+ H LAA Sbjct: 409 TDEDDARFRYVEAVRLAAAEIFRSEEPRRFRVAQRRLARLRTSQGRVDEAVGHLLAARTW 468 Query: 371 LMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM--------QSQ 422 +++ H +L ++ + ++ +P + L +P+L + +A L+ ++ Sbjct: 469 EACAELVDLHWATLVAE-RPEVVADVVETVPEEVLARHPRLGVARAHLLPVLRPQRRRTS 527 Query: 423 HRYGEVNTLLA----RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 V+ L RA H + + + E + G+ A LA+ A + Sbjct: 528 GSGAPVDGALHDVGPRATHPEEGLAQVLGSMEEGLGQIVTLRLTGDFGAATTLAERAQDG 587 Query: 479 LPPGWFYSRIVATSVLGEVLH-------CKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 L P + A L +L+ ++ +LA +Q ++AR D + Sbjct: 588 LGPLLDTADTAAKGELAPLLYEWAVTRLLGADVEGALAAFRQGAELARSVDRPVVLREAA 647 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + + G+L+ A E ++ +E P+ E + + A R + A Sbjct: 648 VGAALCCALLGYLEQAEEWL---LEVPPGVPVEDAPIQEGRGVRTVRSIVALERFEPAGP 704 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 + L + + + E+L G S + Sbjct: 705 EQTVLLGDLGAASGLGVVVVAVRAQAALRDGTHYEVLAEVEEAREHLQGTTATKSLREAL 764 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 711 V + G + A + H + AR ++ G+ E A Sbjct: 765 LAGAAVDLYLGLGYVSKARAAVAGID-------HGYEVVGLACARTDLVAGDLEDAVTRA 817 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 L A + LL+L G + +A L +A + TG + F+ Sbjct: 818 SALL--ATRVAGPRLRLDLLLVLAAAQAGLGHRHEAAVALEEATSICRATGLLRSFLKVP 875 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 + + L L+ A+ + P Sbjct: 876 REVLEDLAPLVPGVRAVLEAPGFAEAVGV--------------------------FPSEP 909 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 + L+ RE QVL + S +A L +++ T+KTH+R++YQKLG + V+ A+ Sbjct: 910 PRARLSSRELQVLRSLAESPSLASVARSLFLSSNTVKTHLRSIYQKLGTHSSVETVEKAR 969 Query: 892 QLLKM 896 L + Sbjct: 970 DLGLL 974 Score = 96.2 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 23/224 (10%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN---DIGWYSLD- 65 P V + L A L L ++ +P GYGKT L+S WA G+ D+ W S Sbjct: 21 PRAPSVLVAKPTLTALLDRHE--PLTVLRAPKGYGKTALVSGWARGRAAHVDLVWVSCRL 78 Query: 66 ---EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP 122 D F + L + ++ G + + + LA P Sbjct: 79 PSVLSDGMPAPFWARLADEMWRSGLGVVEPGLAPGR-----------SDVVAALAGRSDP 127 Query: 123 LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 L +V+DD+ T+P + + + + L +VVL+R+ P+ A L +E+G Q Sbjct: 128 LCVVVDDFDDNTDPHVAGELLDLVSR-FDTLDVVVLARS-PRTADALLASTVDSVELGPQ 185 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIA 226 L + +A L + + R+ D GW L+ + Sbjct: 186 DLLLSVDDAAGLVSA-LGHELTPDQVHRLVRDTGGWPALLRAVL 228 >UniRef50_D1A6G3 Transcriptional regulator, LuxR family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A6G3_THECD Length = 954 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 156/881 (17%), Positives = 270/881 (30%), Gaps = 100/881 (11%) Query: 80 AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 A + + A + A L L L LAE +P LVI+D H + Sbjct: 103 AGLARLLPEFGEPESDTASGEERARLFELVLTLLERLAE-RAPTVLVIEDVHW-ADRSTR 160 Query: 140 ESMRFFIRHQPENLTLVVLS-------RNLPQLGIANLRVRDQLLEIGSQQL-AFTHQEA 191 + + F R+ LVV + R P + L ++ + +L + E Sbjct: 161 DLLAFLARNVSAAPLLVVATYRTDELHRTHPLRPL--LAELTRVERVRRMELTRLSRGEV 218 Query: 192 KQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHL 251 + L A R+ + G ++ AL A + +S R L Sbjct: 219 GELVRGLLEGEPPAGLVERVYERSEGNPLFVE--ALLADDGERALPESLRDLLLAA---- 272 Query: 252 SDYLVDEVLDNVDLATRHFLLKSAILR-SMNDALITRVTGEENGQ--MRLEEIERQGLFL 308 + + TR L ++ + AL+ V+G ++ L + + Sbjct: 273 --------VQKLPEETRETLRVASAGGTRIEHALLAAVSGLDDAALARVLRPAVEANVLV 324 Query: 309 QRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ-------GFPSEAI 361 +D G F H L + L E ++H AE+ Sbjct: 325 --VDGDGYAFR-HALIREAVHDDL---LPGEHTQLHARYAEALERDPALVPSGRLWVLLS 378 Query: 362 HHALAAGDALMLR----DILLNHAWSLFNHSELSLLEESLK---ALPWDSL---LENPQL 411 HH +A + + + +L++L L+ +P + + ++ Sbjct: 379 HHWYSAHEPTWALVSAWRAANDARKAAAYAEQLAMLSRVLELWYKVPDAAARIGARHVEV 438 Query: 412 VLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERL 471 + + + L A E + +D A R +++ G P+ + L Sbjct: 439 LEQATLAAELAGEHERGVKLATAALREAEAAGDDARCAALLEQRGRMSYELGRPEYIDDL 498 Query: 472 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ----------- 520 A R A + L + +LA +++ +AR+ Sbjct: 499 RAAAARLPADPPSAVRARALASLAHYARPRNNDGEALAAARESLALARRIGDTAAEINAL 558 Query: 521 --------------------------HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 554 H L + +S L G A E + Sbjct: 559 LTLFCVGIDYSGGLAELEEVERIVQRSGERHPLLRVAVLRSHFLEGAGRHAEAAEVARQG 618 Query: 555 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 614 +L E L + +L A+ L + R DEA + + ++ + L LA Sbjct: 619 VELAREVGLSRT-HGAWLSVNLAEPLVSLGRWDEALSCLKQALDQDPMAVVRTSLHVLA- 676 Query: 615 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 674 + +LARGDL A + L ++ + D+ + + A A Sbjct: 677 -GEVALARGDLAEAEAHLGPAGDI--KWREAQDYFAMLRLESALRLAQGRIGEALAAVEN 733 Query: 675 HTAKPEFANNHFLQGQWRNI-ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 733 P +++ I ARA + A +LE + + A L + L L Sbjct: 734 VLECPGLSDDARYAWPVLVIGARACGEWSDRAAAAAMLERIEKRAAELAVQGPLQEAHRL 793 Query: 734 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 793 + A R G F L +L Sbjct: 794 TFEAQLARAHGRRDLAAWDAAAAAWERIG--QPFARARALAEAAEAALAGGER--DLAAR 849 Query: 794 RAQRILREINQHHRHKFAHFDENFVER-LLNHPEVPELIRTSPLTQREWQVLGLIYSGYS 852 R Q + A E R LN LT RE +VL L+ G + Sbjct: 850 RLQEAEALAGRLRAAPLARRLEETARRGRLNGTAPSAARSPYGLTPRELEVLRLVAQGRT 909 Query: 853 NEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 N +IA L ++A T+ H+ N+ KL V R +A A +L Sbjct: 910 NREIAEVLFISAKTVSVHVSNILAKLQVPTRGEAAATAHRL 950 >UniRef50_D2PVL9 Transcriptional regulator, LuxR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PVL9_9ACTO Length = 971 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 150/889 (16%), Positives = 271/889 (30%), Gaps = 101/889 (11%) Query: 79 IAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH--SPLYLVIDDYHLITNP 136 A+ + H I + + +LF + PL ++I+D H + Sbjct: 104 FPAIGRLLPTHRLIGAQPSPQEGQLDRAALFDAVLGAFTALSTSEPLVVIIEDAHWADDS 163 Query: 137 VIHESMRFFIRHQPENLTLVVLS--------RNLPQLGIANLRVRDQLLEIGSQQLAFTH 188 + + F + +++S R+ + I ++ + L Sbjct: 164 -TRDLIGFLLTRLTSQRLALIVSYRSDDLHRRHPLRRPIGEWSRNPRVRRVSLNPL--DA 220 Query: 189 QEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINA 248 E++ L+ P+ AE+ RI + G +A ++ A Sbjct: 221 DESRALLTALLTEPLPEAEARRILERAGG----------NAFFTEELVAAASMGDADAVP 270 Query: 249 SHLSDYLVDEVLDNVDLATRHFLLKSAIL-RSMNDALITRVTGEEN--GQMRLEEIERQG 305 L+D L+ LD + R A+ R ++ L+T V G + L E+ Sbjct: 271 PDLADLLLVR-LDPLSDDARQVARVIAVAGRRVSHQLLTAVAGLPERELETALRELIDAH 329 Query: 306 LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ---GFPSEAIH 362 + ++ H L + L E H A A++ Q G +E Sbjct: 330 --IIEHPGNASYYFRHALLAEAVYDDL---LPGERVRQHAAYAKALQDQTVAGTAAELAG 384 Query: 363 HALAAGDALMLRDILLNHAWSLFNHS-------ELSLLEESLKALPWDSLLENPQLVLLQ 415 HA + D + + + + + E L DS ++ LV+ Sbjct: 385 HATRSHDLATAFEARVRAGQEAISVAAPQEALKHFEMALELLPNAAADSPIDKTWLVVQT 444 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAI---NDGNPDEAERLA 472 A ++ LL ++ ++ A+ A +A+ +D EA A Sbjct: 445 ATAATLSSQHLRAVKLLRKSLADLGPDAPKLQRAQLLLPLADIALIIDHDNEAHEAISQA 504 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + + P G F +++VA V G + + Q+AR+ A + I Sbjct: 505 FRLMADEPAGVFKAQVVAL--YARVSDALGRPMEAERWAHEALQIAREIGQESAAGDAGI 562 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 +++ G A + E+A + + + L A+ + Sbjct: 563 TLAQLRKRAGDPVAAAKQLEEAAVRAQLSGDAAAEVRSRY--LLGANHYDLGDLVSAKTA 620 Query: 593 ARSGIEVLSSYQPQQQLQCL---AMLIQCSLARGDLDNAR-------------------- 629 + Q ML A G+ D A Sbjct: 621 LQYAARRAGELGRQWAAYGFDARRMLALTHFALGEWDEAAATARPDAMTPAAAEAGLRSV 680 Query: 630 -----------SQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 678 S L+ L + V ++ G A A A Sbjct: 681 GLTVRGGRGDTSVAEDLQRLRKWWTLDVMVPLIGLQPAVEAYRQLGQVAEAEKL---IAD 737 Query: 679 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 738 Q +W LG ++ V+ E A + DL + + Sbjct: 738 VTALLTDVFQSEWFMARIRFSTLGLQLLSQRVVSEPTAAAELVARGQDLLADGHATAEKG 797 Query: 739 WQAGRKSDA------QRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE- 791 GR R+ + +L G E A Q+ + E Sbjct: 798 LPPGRVLGVEGIAWLARLEAEWERLRWLAGIDPPTAEEHVATWQRTVDAFGFGYVSEQAW 857 Query: 792 -QHRAQRILREINQHH-RHKFAHFDENFVERLLNHPEVPELIRTSP------LTQREWQV 843 + R LR + ++ A L P + EL + LT RE +V Sbjct: 858 SRLRLSDALRAAGRVADANEQAQLAAETARELGAKPLLEELGSAAEPAGAAALTARETEV 917 Query: 844 LGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 L L+ G +N Q+A EL ++ T+ H+ N+ KLGV R +A A++ Sbjct: 918 LALLAEGRTNRQLARELYISEKTVSVHVSNILAKLGVRSRTEAAAVARR 966 >UniRef50_C1RNQ7 ATP-dependent transcriptional regulator n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RNQ7_9CELL Length = 925 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 71/357 (19%), Positives = 119/357 (33%), Gaps = 36/357 (10%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDN 69 P + V R LLA L + ++ P G GKTTL++QW Sbjct: 15 PPTVRRGVARRALLAVLDEVLDTGTGIVVGPRGSGKTTLMAQWVHE-------------- 60 Query: 70 QQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDD 129 S L A +A + + A+L L +P LV+DD Sbjct: 61 ------SGLRALWARAGREGITLRAGGRARTTTP------AELGGILRASSAPTLLVLDD 108 Query: 130 YHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQ 189 H + E + + P + +++ +R P +A + ++ + + L Sbjct: 109 VHELRGAAADE-VEQLLLSAPPAVRVLMGTRREPSYTLARSEIGAPVV-LTATDLRLRTW 166 Query: 190 EAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINAS 249 E + F P+ + + + + GWA A+ L + + + A R + Sbjct: 167 EVDRLFRDVYGHPLTSDDVETLTHETEGWAAAVHLFHRATDGLLPADRRRAVRTLRSDTR 226 Query: 250 HLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM------RLEEIER 303 + SDYLV EVL +D L + ++ + +T G L E+ER Sbjct: 227 YASDYLVGEVLAELDRPLVDLLHRGSVFDELTAERCDALTAATPGGAPTPTAPLLRELER 286 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 D F + LR L A A E + P +A Sbjct: 287 TWSLATTQDGVH--FRLPRVLHRHLRAAQSERLGAAARAWQERAREVLGREAAPDDA 341 >UniRef50_UPI0001B574B6 protein kinase n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B574B6 Length = 950 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 144/820 (17%), Positives = 267/820 (32%), Gaps = 77/820 (9%) Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLS-RNLPQ-------LGIANL 170 P+ LV+D+ H + E + + R+ E LV+ R+ A Sbjct: 157 VRGPVLLVVDELH-CADRGTIELLHYLGRNAEELPLLVIGCFRSGVDNEALDAMAEAARR 215 Query: 171 RVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSAR 230 +LLE+ T Q + L +P A + A+ + L ++ Sbjct: 216 HPAGRLLELAP----LTDQAVRDLVRHVLGTPPPLALLRAVTSR----ASGVALFVVALT 267 Query: 231 QNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILR-SMNDALITRVT 289 + H +A R+ G + D + +++ + R L A+ ++ V+ Sbjct: 268 R-----HLAASRMCGPLPEVIRDVVREQI-GRLGEVDRRLLEVVAVAGTHGRPEVLADVS 321 Query: 290 GEE--NGQMRLEEIERQGLFLQRMDDTGEWFCY-HPLFGNFLRQRCQWELAAELPEIHRA 346 G + L + + L +++ + + HPL+ + AE +H A Sbjct: 322 GMDLPELHATLRRLVGRRLVVEQQSEVEPHYQVAHPLYAEAVYHELLL---AERRALHAA 378 Query: 347 AAESWMAQGFPSEAIHHALAAGD---ALMLRDILLNHAWSLFNHSELSLLEESLKALPWD 403 + A H A GD + +L E L A Sbjct: 379 IGAALHRADRTVAAAPHYAAGGDSVPVDRAIEAFSAAGARALTVGDLDEAAEYLSAALRR 438 Query: 404 SLLENP----QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE-FNALRAQV 458 + E P L++ A L Q + R E LL A + +DT + L+A + Sbjct: 439 AREERPDAVPALLVDLARLQQGRGRLDEAAELLQDAVALSERRGQDTERRRAWRHLQALL 498 Query: 459 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 518 + GN A LA+ A P +R++ ++ G+ + Q+ + Sbjct: 499 EVERGNLPAAVGLAR-ASGRRPDTDPPTRLLVHWIIALRH---GDFPELAVISQELVALP 554 Query: 519 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 578 D + + + +G ++TA A +L E + + Sbjct: 555 STSDTPGAHSVAHLGAGALAALKGDVETAVVELRSALELALRCGDEGPRLAFAPRMMLNG 614 Query: 579 LLWAWARLDEAEASAR-SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL-- 635 L L A A S + + P ML GDL A S+++ Sbjct: 615 LSTLRGDLVTAIRVADVSTTPAVRQWLPSATCYLQTMLATTRYFAGDLRTALSEMDSAVA 674 Query: 636 -ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 694 +G + ++ VR + A A+ RH + + Sbjct: 675 EARRVGQDRLVGRTLAGRAFVRAERGHLDEAAADLADARRHYDPSQIDMLDAFDLAATAL 734 Query: 695 ARAQILLGEFEP-------------------AEIVLEELNENARSLRLMSDLNRNL---- 731 A + + + P A + + + R+ L Sbjct: 735 AVRRGVAAQAPPLTDTLPFGDTQLNCLRVSFAGYAAVQRGDLTEADRVAGLLREAGTNAP 794 Query: 732 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 791 +L Q G A+ +A++ + + + G M L +L L+ Sbjct: 795 VLHALADRQQGFADAARGKATEAVERLRGSATV----LRGFGM-NLLAAQAELELAELLD 849 Query: 792 QHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGY 851 A + + + ER++ R+ PLT+RE ++ L+ G Sbjct: 850 PPEADVVTSSAAAAFTAAGS---TPWPERIVKQEHSVPTQRSGPLTRRESEIAVLVGEGL 906 Query: 852 SNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 SN IA L ++ T++TH+RN+Y+KLG+ R Q + Sbjct: 907 SNADIASALFLSERTVETHLRNVYRKLGLKSRVRLAQWVR 946 >UniRef50_C8XGA7 Transcriptional regulator, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGA7_NAKMY Length = 927 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 154/915 (16%), Positives = 264/915 (28%), Gaps = 87/915 (9%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASY-----LIAA 81 + A + L+ G GKTTLI + D+ SL G + E SY L A+ Sbjct: 22 ARAGAPHVVLLVGEPGIGKTTLIDGFLRRHRDVT--SLRAGGDDSEMLYSYGIVRQLAAS 79 Query: 82 VQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHES 141 A +A ++ S L E + P LVIDD +P + Sbjct: 80 AGPAGLELAGQLAQVAPVPDPIAIGSQLLALLGE-RQQAGPAVLVIDDIQWADDPSVKSI 138 Query: 142 MRFFIRHQPENLTLVVLSRNLP--QLGIANLR-VRDQL-LEIGSQQLAFTHQEAKQFFDC 197 R Q + L +++ R +L LR VR +L EI LA E + Sbjct: 139 TFGLRRLQADQLLVILAVREESINELPDGLLRIVRGELATEIRLGGLA--EHELAELAGK 196 Query: 198 RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVD 257 A + R+ G L A + A+ + S +LV Sbjct: 197 LGIGSFPARAARRLRSGTDGHP----LFARELLREFPPESWGAQDVLPPPRS--FRHLVR 250 Query: 258 EVLDNVDLATRHFLLKSAILRSMNDALI--TRVTGEENGQMRLEEIERQGLF-LQRMDDT 314 + R + +A++ ++ L ++ + + + ER L L Sbjct: 251 QRYRRCSTDGRRLVDAAAVIG-LSAPLALTAQLADLPHALEAISDAERADLLQLVDASYP 309 Query: 315 GEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA--------------------- 353 G HPL + + +H AA+ Sbjct: 310 GSVRFPHPLVRSAVYS---AIDPPHRSALHARAAQLLDDTRTVLQHRFAAARQPDEGLAA 366 Query: 354 -----------QGFPSEAIHHALAAGD-----ALMLRDILLNHAWSLFNH--SELSLLEE 395 G A H + + A R +L + + S+ + L E Sbjct: 367 DLSAFAATEIHNGEWVSAATHLVRSSRLSPQPADRQRRLLRAVNFLVIAGAASQAAHLAE 426 Query: 396 SLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALR 455 + + P L ++ +L + E LL+ A ++ + + A Sbjct: 427 EVASFPPGPLRDS-----TLGYLATATRGPAEAGRLLSSAWQQVDPAADRELAATIALQS 481 Query: 456 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 515 A + + A++ P R VA + L G +L +++ Sbjct: 482 AIHFHGRLDGPATATWSAKAIDLTEPDD-PMRFVAETHRAFGLGYSGRFGEALPVVEDVT 540 Query: 516 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 575 + L TA ++ L L F Sbjct: 541 GTIDGSPDARRVQHGAA-HGWLRLINDDLVTARSML--HAVAVDAARLVTLNTAAFSYAH 597 Query: 576 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC-LAMLIQCSLARGDLDNARSQLNR 634 A+ + EA + I + + + M + ARG+ AR+ + Sbjct: 598 LARAEYLAGAWHEALVHIENAIALTTESESDYLRSLVFGMAVVIPAARGEWAAARTYADL 657 Query: 635 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 694 + + + A + +R + + + Sbjct: 658 ATAEASSYERAVAAAALAGAQLAAARDEPERVLDLLDPIRAMHPRQGIDEPGIWPWPELY 717 Query: 695 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 754 A A LG A+ L A R S + R L +AGR S A + A Sbjct: 718 ADALTALGRTAEADAFLIPHELLAHRRRRASAIARLARARGSLESRAGRDSVADQAFQLA 777 Query: 755 L----KLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKF 810 +LA + G + + R+ L + Sbjct: 778 AGQIQRLAMPYEQALIELAHGRHLVRTNRRKAAAKLLTAAGDRFTALGAAPFLAQTVAEL 837 Query: 811 AHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTH 870 + LT +E V LI G +N + A +L V+ TI+ H Sbjct: 838 RACGITVEGTTRQRLRI-------GLTSQELVVARLIADGKTNREAAADLVVSVKTIEYH 890 Query: 871 IRNLYQKLGVAHRQD 885 + N+Y KLG R+ Sbjct: 891 LSNVYAKLGGITRRQ 905 >UniRef50_Q5NWK2 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWK2_AZOSE Length = 432 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 80/405 (19%), Positives = 136/405 (33%), Gaps = 32/405 (7%) Query: 502 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 561 G R A + +++ H +S+ + I QG + A E + + Sbjct: 44 GPRRRGHAGDRAAKRLLEPIGTVHALNYSVTFEGAIALLQGEAKAARARFEGTLEAVIAG 103 Query: 562 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQQQLQCLAMLIQCSL 620 + A+ L+ LD AE + V+ P + +L + Sbjct: 104 GHRYTTSSAIVAAHLAEALYELNDLDAAETLLIDYLPVIHDGCLPDHIIVAYQVLARIQA 163 Query: 621 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK-- 678 RG A L+ L++L IS A+++ + A R A Sbjct: 164 QRGQYAKALVTLDTLQDLGDVRSIPR--ISAASRIDKHRLALLALLAGDLAAARRMAPLL 221 Query: 679 ----------PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 728 L AR ++ G L++ A +L + Sbjct: 222 ADASVWQSSSGFLLYAENLDDPLVADARLALVEGSVRAVIPRLQDAICEANALNRRRRVA 281 Query: 729 RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLP 788 R LL Q + A R+ A L AL A G + F E + L+ L + Sbjct: 282 RMQCLLAQAFDVARRRPQALETLERALLQAEPGGMLRVFADEPWHLHDLLQALA--DRKC 339 Query: 789 ELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIY 848 + Q + + P+ P L+ +E Q+L + Sbjct: 340 AVSPGYLQNLRAAATRTEP---------------VAPKGPLQDEAMRLSPKEGQILRRLA 384 Query: 849 SGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 G+SN+++A +L V T++TH+R +Y KLG+ R AV A +L Sbjct: 385 EGHSNKELARKLFVTENTVETHLRRIYGKLGIRSRTQAVARALEL 429 >UniRef50_D1C1B5 Transcriptional regulator, LuxR family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C1B5_SPHTD Length = 1034 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 157/982 (15%), Positives = 293/982 (29%), Gaps = 142/982 (14%) Query: 14 DHTVVRERLLAKLSGANNFR--LALITSPAGYGKTTLISQW------------------A 53 + R +L A R + L+ AG GKT L+ Sbjct: 87 RQLIGRRAEFDRLRAAIEGRGGVVLVAGDAGVGKTVLVEALGYEAIATGVQVMGARCFEL 146 Query: 54 AGKNDIG-WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQL 112 G G W + D ++ + + L Sbjct: 147 DGTPPYGPWLEMFRPDRAPPDL---------PVPAPALSVKDALEAVAGRRKLHDQVLSF 197 Query: 113 FIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLT-----LVVLSRN---LPQ 164 +EL+ H P+ L++ D H IH +RH + +VV R+ P Sbjct: 198 LVELSR-HRPVLLLLGDMHWADEESIH-----LVRHLGRQIRRRPILIVVTYRHVELRPD 251 Query: 165 LGIANLRVRDQLLEIGSQQLAF---THQEAKQFFDCRLSSPIEAAE--SSRICDDVSGWA 219 + L + L E ++++ + + R + + + + G Sbjct: 252 EPLYRL-LPHVLRETEAERITLREWDRDDVAELVTARYQLSAADQDRLVTFLLNSSEGNP 310 Query: 220 ----TALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSA 275 LQ + A L+G+ L L+DE L+ + RH L +A Sbjct: 311 FFINELLQSLEDEAVLRLTDEGWILGELSGVRVPPLLRQLIDERLERLAPEARHLLQAAA 370 Query: 276 IL-RSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDD--TGEWFCY-HPLFGNFLRQR 331 ++ + + VT + L ++ Q L ++ M + + H LF L + Sbjct: 371 VIGEEIPIDVWQAVTEVSD--EALADVIEQALAVRVMVEMPQDPVLRFRHKLFRQSLYEH 428 Query: 332 CQWELAAELPEIHRAAAESWMAQGFPSEAI--HHALAAGDALMLRDILL---NHAWSLFN 386 HR AE A+ P + H AGD ++ A + Sbjct: 429 MILL---RRRSWHRRIAEVLAAEANPDPDVVARHFSEAGDPRAAEWVIASGRRAAGAFAL 485 Query: 387 HSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQH-RYGEVNTLLARAEHEIKDIRED 445 + E++L L D + + LL + L A+ ++ ++ Sbjct: 486 AVTAARFEKALAILEGDDQRQRERAWLLCELAEAYRFTDPQRAIAYLDTAQRIADELGDE 545 Query: 446 TM-------HAEFNALRAQVAIND------------------------------------ 462 + A L A+ A + Sbjct: 546 GLQTVIPYCKARVRTLEARNAFAELRESWRGIEGLPESTRHVLAGSPLAYAVSRATYAQV 605 Query: 463 ----GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 518 G A A+ LEE P + A +G + + A + Sbjct: 606 LAHYGAYGPALEHAERFLEESPSADPREQGTAYFAIGLANAGLARPSEARAAFDRARTFF 665 Query: 519 RQHDVWHYALWSLIQQSEILFAQ---GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 575 RQ + +H + + +++ ++ + A + L + + Sbjct: 666 RQTETYHMVGATYDWELDLVLQVYYPDRVEERRRLLDDAARAWRHSVFGALVLMGSFPTM 725 Query: 576 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 635 LL R +EA ASA + + Q L +L +GD A +++ Sbjct: 726 IDSLLLE-GRWEEARASATAFLSA-----NAQPLGMRRILADLDRRQGDTARAWARIAEA 779 Query: 636 ENLLGNGKYHSDWISN---ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 692 + + + V GD A W+ + ++ + Sbjct: 780 LPDGPDTEPPLNHFPYGLRLIGVAAELALDDGDLDWARRWILALERWLEWSDIVVGRAAP 839 Query: 693 N--IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 750 + AR G+ + A E A + R + L +L A++ Sbjct: 840 DHLWARYDAAQGDLDRAWQHQREGLRRASNPRQPLAMLTAHRTLARLATLRRDFPTARQH 899 Query: 751 LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKF 810 L A +LA E + ++ L H A +L Sbjct: 900 LAGAERLATSF--------EAPYVLALVQVTHAELLLASGRGHEAGGLLAAARATAEELG 951 Query: 811 AHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTH 870 A ++ L P L+ RE +VL L+ G ++ ++A L ++ T+ H Sbjct: 952 AKPLLAVIDHLEPRP----TAVPGGLSAREIEVLRLVAEGLTDAEVAERLSISPRTVGGH 1007 Query: 871 IRNLYQKLGVAHRQDAVQHAQQ 892 ++++Y KLG++ R A A + Sbjct: 1008 LQSIYNKLGISSRTAATSFAHK 1029 >UniRef50_C8SW08 Transcriptional regulator, LuxR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SW08_9RHIZ Length = 863 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 149/896 (16%), Positives = 272/896 (30%), Gaps = 72/896 (8%) Query: 20 ERLLAKLSGA--NNFRLALITSPAGYGKTTLISQWAAGKNDIGWY--SLDEGDNQQERFA 75 E L L+ A + +A ++ AG GK+ L+ + A + S E + + Sbjct: 11 EHLDGLLAEAMRGHGHVAALSGEAGAGKSALVEAFIADAGERARILRSACEDLSIPDPLG 70 Query: 76 SYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITN 135 + RQ L LF+ P LVI+D H + Sbjct: 71 P-----LYDLAREAQWPLPQAIDARQGQRL-PLFSDALAVFESKARPTLLVIEDLHWADD 124 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF 195 + +RF R N +++L +RVR L EI + + T E Sbjct: 125 -ATLDFIRFLGRRI-ANTHILLLLTARTDRSEGQMRVRRALGEIPAGSI--TRIEVPLLS 180 Query: 196 DCRLSSPIEAA--ESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSD 253 + + S +A + I + A + A Sbjct: 181 EAAVRSLAASAGRDGEAIYRAT----AGNAFFVTELLCADNETMPPASVRDAVLARA--- 233 Query: 254 YLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDD 313 + + R L ++ DA + +L E GL +DD Sbjct: 234 -------ERLSAGARSMLDAVSVFPRRADAWALQGLCGVASAGQLAECVSNGL----LDD 282 Query: 314 TGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA--IHHALAAGDAL 371 G+ + + R + + ++ A + + +G + A +HHA+ A + Sbjct: 283 LGDAYAFRHEIAR--RAIEMTLTTSHRRQFNQRALSALLERGDIATARLVHHAVEASNFE 340 Query: 372 MLRDILLNHAWSLFN-------HSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 ++R++ A + LP + E L A+ R Sbjct: 341 VVRELAPLAAREASRVGAHRDAAGYYEVALRQADGLPAE---ERAALYEQYAFECHLIGR 397 Query: 425 YGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF 484 + A +D+ ++ A G+ A+ L A+ L Sbjct: 398 IDDAIAAQEHARKLQRDLGNVLKEGNSLRCLSRFAYLLGDRKTADLLGAQAVALLETAPA 457 Query: 485 YSRIV-ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 543 + A S L ++ L +L+L + ++A D +L Sbjct: 458 GPELAMAYSNLSQLAMLSERLDEALSLGDKAIKLAGLLDRPDIFCHALNNVGSAEQWL-D 516 Query: 544 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSS 602 L + + ++ ++ EQ+ ++ F A + EA + GI + + Sbjct: 517 LASGRQRLAQSLEIAIEQNFQEHAARAF--TNSACVEMNQLGYSEARSLLERGINYCVEN 574 Query: 603 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 662 + +L Q L +G D A +LL N + + A Sbjct: 575 DLVTWRDYMRGVLAQLRLRQGQWDLAE---AEALDLLANDQATALVRYPAVVALARLRVR 631 Query: 663 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR 722 GD + E + + + LG+ + E + +L + A SL Sbjct: 632 RGDPGTGPLFEEMMRFLERGGELQRLAPYALLMAERAWLGQADTDEAL--DLIDAAESLS 689 Query: 723 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI-----SHFVIEGEAMAQQ 777 + L Q+ D +A + M Sbjct: 690 PTRAVFAELACWRQVLVPDCDPGDTTG-------MAEPYRMLLGGDWRGAADLWAGMGAS 742 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAH--FDENFVERLLNHPEVPELIRTSP 835 + + L E Q A I + N V + P ++ Sbjct: 743 FERGLALMQGDEPAQRSALEIFERLGAGAVAHKVREIMRRNGVNNIARGPRQTTRANSAG 802 Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 LTQR+ +VL LI G SN++IA L ++ T+ H+ + KL R +A A+ Sbjct: 803 LTQRQMEVLQLIERGLSNKRIAEHLAISPKTVDHHVSAVLGKLDAISRGEATAAAR 858 >UniRef50_A4FHX0 Transcriptional regulator, LuxR family n=8 Tax=Actinomycetales RepID=A4FHX0_SACEN Length = 900 Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats. Identities = 155/915 (16%), Positives = 273/915 (29%), Gaps = 91/915 (9%) Query: 22 LLAKLSGANNFRL--ALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLI 79 L + A R +++ AG GK+TL + A W++ Sbjct: 18 LEGLVREAGEHRCGFVVVSGAAGTGKSTLGRRLLARHEGPAWWA---------------T 62 Query: 80 AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 AA ++ + + + + A ++ ++ LA V+DD H + Sbjct: 63 AAPWESRQPYGVVAQMLPDLDVGAGPVAVAERVADRLAASDGTTVAVVDDGHW-ADEESL 121 Query: 140 ESMRFFIRHQPEN--LTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQF--F 195 +++ +RH P L + P A L + L I + ++ + A Q Sbjct: 122 QALASVVRHHPRARLLVVAFAVTGDPHASAATLEL---LPRIATAEIRLSPLTAAQVNEL 178 Query: 196 DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYL 255 + + + R+C G A + L + A R G+ A Sbjct: 179 AAARGVVLHPSIAERLCHHTQG--AARHIAQLL---DEVPAATWTRFDPGLPAPAAVAAR 233 Query: 256 VDEVLDNVDLATRHFLLKSAILRSMNDAL-ITRVTGEENGQM-RLEEIERQGLFLQRMDD 313 V E+L R F+ +A+L + G ++G + L+E GL Sbjct: 234 VRELLAGCSPTVRAFVEATAVLGPGTAVRDAALLAGVDDGLLTVLDEACATGLVRLAPRG 293 Query: 314 TGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW---------------------- 351 E P+ +HR AA+ Sbjct: 294 LAEVGPADPMVR---AAVLAALAPGRRSGLHRRAADLVDDPARKLRLLVAASPVPDPAVA 350 Query: 352 ----------MAQGFPSEAIHHALAA----GDALMLRDILLNHAWSLFNHSELSLLEESL 397 ++G +EA + A D L + +L ++S + Sbjct: 351 DRLDALATERASEGAWAEAASLLIDASRLTEDRLERESRISRAVDALIGAGDVSAAAALV 410 Query: 398 KALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQ 457 + +SL E P + +L + R E + L RA + R+ + A Sbjct: 411 PEV--ESLRETPLRNAVLGYLAVVRGRVAEAESRLGRAWSLVNAERDPDVAALICQRYVL 468 Query: 458 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM 517 A+ E A A+ P + + A ++ G L G ++ + + Sbjct: 469 HALVRCRAGELVTWADRAISLAGPDAPAA-VEAAAIRGLGLAATGRAGQARRDYARLGER 527 Query: 518 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 577 R + + + A + A E A ++ + RA Sbjct: 528 VRHGAQAQRVMMARGWLDLLTDA---VDDARAELESAVPTTFLGGSTRISLWARAWLARA 584 Query: 578 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM-LIQCSLARGDLDNARSQLNRLE 636 QLL D+A + R +L L + RG+ + A L R + Sbjct: 585 QLL--AGAWDDAVRTVRDAAPLLERSGIVLTGPLLHWTEVTVHALRGEWEQAEQALLRCD 642 Query: 637 NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR---N 693 G Y + R + D A L + G W Sbjct: 643 --AGPQDYEIMRVPT-YLARAQVAEARADSAGVLRALHPLTQSWAGGGIDEPGHWPWHDM 699 Query: 694 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 753 A A +L G E A+ L A + S R +L G + A Sbjct: 700 YAHALVLEGRHEEADEFLLPHERLAATREHASARARLAAARGRLLGAQGDPAAATTAFEQ 759 Query: 754 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHF 813 AL+L A Q LR+ + + + + Sbjct: 760 ALELLEGLPLRYDHARVAFAYGQTLRRAGKRREADAVLTTARDGFAAMGAATYVERCDRE 819 Query: 814 DENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRN 873 + L + LT +E V L+ G SN + A EL ++ T++ H+ Sbjct: 820 LKAGGVHTLRAERA-----FNELTPQEEAVARLVARGLSNREAAAELFLSTKTVQYHLTR 874 Query: 874 LYQKLGVAHRQDAVQ 888 +Y KLG+ R + Sbjct: 875 IYTKLGIRSRAELAA 889 >UniRef50_A1SPZ4 Regulatory protein, LuxR n=1 Tax=Nocardioides sp. JS614 RepID=A1SPZ4_NOCSJ Length = 1006 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 161/964 (16%), Positives = 289/964 (29%), Gaps = 131/964 (13%) Query: 34 LALITSPAGYGKTTLISQWAAGKNDIGW-----YSLDEGDNQQERF-----ASYLIA--- 80 L L++ AG GKT L+++ GW + LD GD+ L A Sbjct: 64 LVLLSGDAGVGKTRLLTELRDLAFTEGWQVVAGHCLDFGDSALPYLPFSEVLGRLAADLP 123 Query: 81 -----------AVQQATNGHCAICETMAQKRQYASLTSL----FAQLFIELAEWHSPLYL 125 A+ + G + +L +E A +PL L Sbjct: 124 DLVEEVAGRHSALARLQPGRRVMGSPARSSDDLGALDRSDLFEAVHALLESAATSAPLLL 183 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLS--------RNLPQLGIANLRVRDQLL 177 VI+D H + + + F VV S R+ + +A + Sbjct: 184 VIEDTHW-ADQSTRDMLSFLFSRPFAGPVSVVASYRSDDLHRRHPLRRQVAEWSRIRGVH 242 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + L + + + E + I D G A + T +A Sbjct: 243 RVPLSPL--SDDAVRALIAELAPEGLAERELADIVDRAEG-------NAFFVEELTSAAA 293 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAIL-RSMNDALITRVTGEENG-- 294 R + + L+D L+ LD +D R + +++ R ++ + +G + Sbjct: 294 GPGRWV----PADLADVLLVR-LDRLDDTARQVVRTASVSGRRVSHETLAAASGLADAEL 348 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRA--AAESWM 352 L + + + D F H L G + L E +H AA Sbjct: 349 DEGLRKAVEMNILV--AGDGRYSFR-HALLGEAVYDDL---LPGERVRLHAQYVAALRAG 402 Query: 353 AQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ-- 410 A+G +E HA A D + + LL +P+ Sbjct: 403 ARGTAAELARHARLAMDLDTALTASIQAGDEASRVGGPDEAAYHYQQ--ALELLVDPRRC 460 Query: 411 ---------LVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAIN 461 LV+ A + + ++A + T A + +A + + Sbjct: 461 AQVDLDLSKLVVSAAEALSASGDPERAVKVIADQVERLPVDAPTTWRARMMSTQALLTMM 520 Query: 462 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 521 D+ ++ A+ +P G R + VL G+ + + +A + Sbjct: 521 IEGSDDPVGMSTEAVALVPDGDSGLRTRVLANHARVLAGMGQYDEAQTVGLDALHLAERL 580 Query: 522 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 581 D H +I L G + + A M + + Sbjct: 581 D-LHELASEVITTLSGLKKAGPKEGLRQALADAVARAEASGALSSEMRARY--LLGRSYQ 637 Query: 582 AWARLDEAEASARSGIEVLSSYQ---PQQQLQCLAMLIQCSLARGDLDNARSQLN----- 633 WA DE E RS IE + + L + RG D+A + + Sbjct: 638 DWAEFDETERWFRSAIERGADAGIPYAPYAFEARWQLAWVLVVRGRWDDALALTDTGQDT 697 Query: 634 -------------RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 680 R++ L G+ K + + +A + Sbjct: 698 PPPAIPRALIAPLRMQVLQARGEDVRAEARALRKFWAREGGVAINASAVELDAAGLRRDA 757 Query: 681 FANNHFLQGQWRNIAR-------AQILLG--------EFEPAEIVLEELNENARSLRLMS 725 + R A+I LG + PA E + R R+ + Sbjct: 758 AGAIEVYDAVVAVLTRIWHEWFSARIRLGALTIGAVAQAMPALSAAERASYVGRVDRIHA 817 Query: 726 DLNRNLLLLN--QLYWQAGRKSDAQRVLLDALKLANRTGFISH---------------FV 768 D + L + +W ++ +R+ + L++ G + F Sbjct: 818 DGHVVLQRYSDPSGHWGPEGRAWMKRLDAETLRVRWLAGIDAPPLDALVDTWRDAAVLFE 877 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 G A + L R L ++ + H+ R + Sbjct: 878 DFGHAYELARVRTALAGILRATGDLAGGRELGDLARASAHQLGARPLLDELRSIGSAPAR 937 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 LT RE +VL L+ G SN +IA +L ++A T+ H+ N+ KL + R +A Sbjct: 938 TESVPDALTPRESEVLQLVAQGRSNGEIAKQLFISAKTVSVHVSNILGKLDASGRTEAAA 997 Query: 889 HAQQ 892 A++ Sbjct: 998 IARR 1001 >UniRef50_C8XHS3 Transcriptional regulator, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XHS3_NAKMY Length = 959 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 152/960 (15%), Positives = 273/960 (28%), Gaps = 108/960 (11%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYS-LDEGDNQQERFASY-----LIA 80 + A R+ LI G GKT L+ + A L + E +Y L Sbjct: 21 ARAGRPRVVLIEGAPGIGKTALLDRLAEDAAAADDVVVLRASGDLHEDLLAYGVLGQLAR 80 Query: 81 AVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL-----------AEWHSPLYLVIDD 129 + AT G + + + + A L + A S + ++IDD Sbjct: 81 SAGPATPGLPDLPDRSGPAVADPADPADSAPLADPITVGAQWLHRLDAMAGSVVVIIIDD 140 Query: 130 YHLITNPVIHESMRFFIRHQPENLTLVVLSRNL----PQLGIANLRVRDQLLEIGSQQLA 185 P + + R + + V +R + L + L Sbjct: 141 AMWADRPSLLALVFALRRLVADRVLAVFATRERAAGDLPESLTRLITGHLGAVLRLSGL- 199 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAG 245 +E + S + + + R+ + G L AL + + + Sbjct: 200 -DERELRDLATALGVSGVGSTVARRLREGTDGNP--LHARALLEEFPVTVWPVNRQDESL 256 Query: 246 INASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALIT--RVTGEENGQMRLEEIER 303 + A +LV + TR F+ A+L ++ A+ + G + ++E Sbjct: 257 LPAPRPFRHLVRSRYQHSAPDTRRFVDALAVLG-LHAAVADVMAIAGLSDPVGPIDEATA 315 Query: 304 QGLFLQRMDDTGEWFCY-HPLFGNF------------LRQRCQWELAAELPEIHRAAAES 350 L R D + HPL L A E + A + Sbjct: 316 SDLLRVRSADGPWSVEFTHPLVRAAVYDAIGPAARYTLHTAAARVSADEAAALRHRVAAA 375 Query: 351 -------------WMAQG----FPSEAIHHALAA----GDALMLRDILLNHAWSLFNHSE 389 + A+ A H ++A D R +L + Sbjct: 376 TGPDERLAADLTDFAARAQRRFDWKSAAVHLVSASRLSRDPDRARRRVLWALIWTLMRGD 435 Query: 390 LSLLEESLKAL---PWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIK------ 440 + + + + P + L + L+ L + LL RA + Sbjct: 436 AAAASDLVDEVTAYPPEPLRD-----LVLGSLAMAAEEPERAGQLLDRAWAACERACAAD 490 Query: 441 -DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF--------------- 484 E A ++A + + AL + Sbjct: 491 GSALEGDDVAAVALMQAIAHYGRLDAAGTVAWCERALAAVGDRESGPDHPDRPDESDRMG 550 Query: 485 ---YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 + A + L L G L ++ A++ Q W +L + + Sbjct: 551 PQTSIHVAAVTYLAHGLGYLGRLDQAQAVVAAQRQPDESPYRWLNPRSAL---GVLHLVE 607 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-L 600 +A + + + RAQ W D+A+ +A + + L Sbjct: 608 DEFDSAAAVLGSVAASASRIGVLNTAAFSYAYLARAQ--WMAGDWDDAQVNADRAVSINL 665 Query: 601 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 S + + + + ARGD A L L + + + A Sbjct: 666 ESDLGFLRSAVVGIAVLVPAARGDWAAAEQHLRLLPRSQVHYERSIVALGLARARVGEAR 725 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 720 D AA + + + + A A + +G A+ L + A+ Sbjct: 726 GRPRDVLAALDRVHQFPIRDAVDEPGFWPWPDLYADALVAVGRAAEADQFLLSHEQRAQQ 785 Query: 721 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ 780 + + R ++ R AQ AL + G + Sbjct: 786 RGRPTAIARLARSRGRVEAALDRPEAAQAAFDRALTV---VGTVRAPFERARIELAAGEV 842 Query: 781 LIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQRE 840 + + D L + P R LT +E Sbjct: 843 ARAAGNRRRAVELLLAARAGFLGLGATPYAQRCDAELAAAGLATADRPGGPR-FGLTAQE 901 Query: 841 WQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMGYG 900 V L G SN QIAGEL V+ T++ H+RN + KLG+ R+ A +L ++ G G Sbjct: 902 LVVARLAADGLSNRQIAGELVVSIKTVEYHLRNAFAKLGITSRRQ---LADRLAQLPGAG 958 >UniRef50_C1B102 Putative LuxR family transcriptional regulator n=2 Tax=Rhodococcus RepID=C1B102_RHOOB Length = 903 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 130/899 (14%), Positives = 266/899 (29%), Gaps = 95/899 (10%) Query: 44 GKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYA 103 GKTTL+ + A F++ G A Sbjct: 46 GKTTLVEHFLAAHP------------DLPAFSAVCAPWASSRLFGVAEQLLGAAVTSPDP 93 Query: 104 SLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLP 163 + + SP +V+DD H + +S+ ++ +V+++ P Sbjct: 94 LDVAREFVTAVGPRAGDSPFVVVVDDAHW-ADLASLQSLTSAVQLLGRPAVIVLVTNPEP 152 Query: 164 Q----LGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWA 219 + +L R I + L +A+ + + ++ +G Sbjct: 153 PDGVRADVLDLLERHSRHRIRVRPL--DVSDARALASSLAHVDLPTPVAHQLVQHTAGNP 210 Query: 220 TALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAIL-- 277 L + ++ + A+ + L + +R + +AIL Sbjct: 211 RHLTQLLQEVDPVAWGHWQAVLPVPHTFAAKVRSLLCES-----SPQSRALVEAAAILAG 265 Query: 278 -RSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYH-PLFGNFLRQRCQWE 335 D + G E+ L+E+ R GL + PL + + Sbjct: 266 DPRFAD--AAALAGIEHPVEALDELHRAGLLTAGEHRGVTVLTFPSPLTRAAVYRSL--- 320 Query: 336 LAAELPEIHRAAAESWMAQGF---------------PSEAIHHALAA----GDALMLRDI 376 L ++H AA +G ++ + A+ G + D Sbjct: 321 GPIRLRDLHDHAARIVEDEGRRLDHRAAAAPFADPALADELDSYSASRATVGAWSAVADA 380 Query: 377 LLNHAWSLFNHSE--------------LSLLEESLKALPW-DSLLENPQLVLLQAWLMQS 421 L+ + + E L ++L P +S E+P + +L Sbjct: 381 LIKSSRLTADRGEREHRLIRAVDALLGTGNLSQALAFAPEIESFPESPLRDAVLGYLAIQ 440 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 + R E + LL ++ + A R ++ + + + A+ + Sbjct: 441 RGRPAEADALLTQSWTACDPETDPATAALICQRRVLDSLARWHGPDLVEWGRRAVALVDS 500 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQ-TEQMARQHDVWHYALWSLIQQSEILFA 540 + + + +++G L G + + A + ++A + + + + A Sbjct: 501 ADPSA-VESAAIMGLGLAATGRIAEARAAYDTLSAKIALGAQSQRFDMA----RGWLDLA 555 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 600 ++A + E A ++ + R Q A + A A+ L Sbjct: 556 LDDPESARQELESAVPTAFRMGSTRISLWAQAWLARTQF--ALGDWNGAIATVDRAAHQL 613 Query: 601 SSYQPQQQLQCLAML-IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 659 + Q RG+ A L + Y +I ++ R Sbjct: 614 EDATLDLLRPLVHWTGAQTHALRGNWPAAHEHLRLAA--ASSHDYPMMFIPSSLA-RAQC 670 Query: 660 WQMTGDKAAAANWLR---HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 716 ++ D AA L E + A A ++ G + A+ L E Sbjct: 671 AEVEADYAAVIRALEPLTRLEPREGVDEPGFWQWPDVYANALVMAGHVDDADAFLTPHEE 730 Query: 717 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK----LANRTGFISHFVIEGE 772 A S + R ++ G A+ V +AL L G+ Sbjct: 731 RAAERGHRSAMARLGYARGRIAGARGDIDTARDVFENALTQLDTLPLPYDRARVNFAYGQ 790 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 + + ++ + + + Q + N Sbjct: 791 TLRRAGKRREADAVMQAAREGYSALGATSYVQRCDRELKAGGLNVKRSRFT--------- 841 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 LT +E V L+ G SN++ AGEL ++ T++ H+ +Y KLG+ R + + Sbjct: 842 LEELTPQERAVTELVAGGASNKEAAGELFLSVKTVQYHLTRVYAKLGIRSRSELAAQFR 900 >UniRef50_C4RNL2 LuxR-family transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RNL2_9ACTO Length = 957 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 159/897 (17%), Positives = 277/897 (30%), Gaps = 106/897 (11%) Query: 80 AAVQQATNGHCAICETMAQKRQYASLTS-------LFAQLFIELAEWHSPLYLVIDDYHL 132 AA+ G A+ + + A S LFA L L P+ LVIDD Sbjct: 85 AALPALLPGADALLGLLPELGTPAPAPSSQAQMFDLFAALLRRLGA-ERPVLLVIDDLQW 143 Query: 133 ITNPVIHESMRFFIRHQ-PENLTLVVLSRNLPQLGIANLR----VRDQLLEIGSQQL-AF 186 + + + + R + ++ R + LR ++L + +L F Sbjct: 144 -ADRSTRDLLGYLARTMRAARVLTIMAYRTDDLDHLHPLRPFLAELERLRGVRRSELARF 202 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 + E + R ++P + G + + G Sbjct: 203 SRAEIAELVAGRRAAPAARPLVDEVYRRSGG-------------NALFAEELALVDGVGD 249 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 L D L+ V + + + + +A+ + T + L+ + Sbjct: 250 VPDSLRDLLLHRV-EQLPPSALRIVRLAAVGGREVPHRLLAATAGLDETRLLDALRAATA 308 Query: 307 F-LQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA----- 360 + + G F H L L AE +HR AE+ A A Sbjct: 309 GQVLVATEEGYEFR-HGLLRELTAADL---LPAERARMHRRYAEAIEADPSTVPADRLAA 364 Query: 361 --IHHALAAGDALMLRDILLNHAW---SLFNHSE-----LSLLEESLKALPWDSLLENPQ 410 HH AG+ L+ A ++ +E L+ + + L + + Sbjct: 365 QIAHHWHGAGEDRKALPALVRSAEVAGNMHARAEQAHIIERTLDLWPRVPGAEQLSGHNR 424 Query: 411 LVLLQAWLMQSQHRYGEVNTL--LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA 468 L L +A + + +V L + RA EI RE A+ A R N + D A Sbjct: 425 LDLFEAAVGAATWAGEDVRALGLIDRALAEIDQAREPGRAAKLLAHRGMTLHNL-DRDGA 483 Query: 469 ERLAKLALEELPPGWFYSRI---------------------------------------- 488 + A+ LP + R Sbjct: 484 LTSVEEAVRLLPAAPAHIRAGVLDLVSAVFALRGHPGRARDAAEEAAQLAADLGDVKVTA 543 Query: 489 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 548 A + LG VL G SLA +Q A +H+ + + +E L G A Sbjct: 544 NARTTLGWVLCQLGAYDESLATLQAVRDRANEHNDLVQVARAQLNIAEALANLGHYP-AM 602 Query: 549 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 608 A + L L A R DEAE+++ + +++ Sbjct: 603 IDAAHAGLDAAYGSGVSRTLGALLAAHLCAALTAVGRWDEAESTSATALDMDPPNVFSAA 662 Query: 609 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 668 L A+ + + ARG+++ AR QL+ LLG + ++ +A Sbjct: 663 L--YALRAEIAFARGEIETAREQLSLARTLLGPVSHPGPTALAVTRLEAEIALAENRISA 720 Query: 669 AANWLRHTAKPEFANNHFL--------QGQWRNIARAQILL-GEFEPAEIVLEELNENAR 719 A + + L G+ AR + + + ++ L A Sbjct: 721 AQATVAAALPAVTGTSLALYAWPLVTIGGRIETHARIRARVRSRSATGDGAVDALRAVAA 780 Query: 720 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLR 779 L + L R + + G + + +++A + + A + Sbjct: 781 HLPTHTPLFRAYA--TEFAAETGEPAISWPDVVEAWDAVGSPYPAARARLRAAEAALGVG 838 Query: 780 QLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQR 839 +A R+ E A + LT R Sbjct: 839 DRPTARRWILAAAEQADRLGAESLSEQVRLLARSSNLPFGAQAEPRARTGELERRGLTDR 898 Query: 840 EWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 E +VL L+ +G SN QI +L ++A T H+ N+ KLGV R +A A +L + Sbjct: 899 EIEVLHLVAAGRSNRQIGEQLFISAKTASVHVSNILAKLGVNSRGEASATAHRLHLL 955 >UniRef50_A0QF77 Tetratricopeptide repeat family protein n=9 Tax=Mycobacterium RepID=A0QF77_MYCA1 Length = 891 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 173/899 (19%), Positives = 290/899 (32%), Gaps = 67/899 (7%) Query: 20 ERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLI 79 R LA LS A +AL+ AG GK+TL A G + RFA Sbjct: 8 RRSLAALSNAEFHGVALV-GDAGVGKSTLARMLAKTVESAG---------RTVRFALGTQ 57 Query: 80 AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 MA L + L + L +V+DD L+ +P+ Sbjct: 58 TGSAVPLGAFSHAVSLMAVNEPAVMLAAAHNTLSQD-----KNLVVVVDDAQLL-DPLSA 111 Query: 140 ESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRL 199 + + L + + S P L ++++LL FT ++ + L Sbjct: 112 TLVNQLAAWRSARLIVTIRS-GEPVLDAVTALLKERLLLTVHVD-PFTREQTELLAGTVL 169 Query: 200 SSPIEAAESSRICDDVSGWATALQLIALSARQNTH---SAHKSARRLAGINASHLSDYLV 256 P++ + SG L+ + R +A R L D L Sbjct: 170 GGPVDPWVVDELLQRSSGNPLLLRGFLTAGRDTGALFRTAEGWQLRGPLRGDRELHDALE 229 Query: 257 DEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGE 316 L ++ R + A +N ++ + + +ER+GL D + Sbjct: 230 YR-LQSLSSEEREVVEILATAGLLNWDILRDICD----AEAVAALERRGLIRLVTDGSHA 284 Query: 317 WFCY-HPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHH---------ALA 366 HP+ G + +L A + G + H + Sbjct: 285 VAQLTHPMLGEAATRHAGMVRTRQLNGKLARALQKHERTGSRHLRLPHLQSRIRLAEFML 344 Query: 367 AGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYG 426 D D++ A S + L E L D P L+ A + Q R Sbjct: 345 HSDMEPDLDVITEAARDALAMSNVQ-LGEELARFALDRGGGLPA-ALVLAEAVSWQGRGE 402 Query: 427 EVNTLLARAEHEIKDIREDTMHAEFNALRAQVAIN-DGNPDEAERLAKLALEELPPGWFY 485 E +LA AE D +D + A + LRA G+ + A R A + + Sbjct: 403 EAGFVLAHAE---PDGDDDWLIARWGCLRAANLFWGCGDAEAARREADTVKKRVSSEAGL 459 Query: 486 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ 545 I A + + +G++ + + V W+ + L A G Sbjct: 460 HLIDALEL--SMAFFRGDVE---TTTELGPGLCESDAVPMATTWAAVPTCAALAATGRYS 514 Query: 546 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 605 + + + +H F + I + A D A ++ P Sbjct: 515 EVGRIADIGVRAAMSCGMG---LHRFNIGISEIIAATDAGDDRAAERIYKRYAAMAEGLP 571 Query: 606 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 665 + AML LARG+ A + R +L G + S W+ + GD Sbjct: 572 GAEAMVDAMLGVVRLARGEFPAACAAFTRSISLFAKG-FPSPWLVVVGAFQAQAEGARGD 630 Query: 666 KAAAANWLRHTAKPEFANNH-FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 724 AAA L + + FL A + G+ + A + E AR+ + Sbjct: 631 STAAAAALWRADRAYGPHAAVFLPELELARAWERAAAGDTQAATTHATQAAEIARAAGMH 690 Query: 725 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDA------LKLANRTGFISHFVIEGEAMAQQL 778 + R + G +S R+ A L A +G+ + Sbjct: 691 AAEMRTR----HAAVRFGDRSQTARLERLARILDTPLAEAAADHARGLTQRDGDLLDAAA 746 Query: 779 RQLIQLNTLPELEQHRAQRILREINQHHRHK----FAHFDENFVERLLNHPEVPELIRTS 834 +Q L L AQ + R K A L+ P V R Sbjct: 747 QQFADLGALACAADAAAQAAGEHARRGDRGKKFESSAWAHALASRYELHTPAVEAAARPL 806 Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA-VQHAQQ 892 P + RE Q++ L+ +G SN +IA L ++ T++ H+ L+ KLG+ R+ + A++ Sbjct: 807 PFSGRERQIVNLVAAGLSNREIADRLVISVRTVEGHLYRLFTKLGINSREQLTLLVARE 865 >UniRef50_A1TGW8 Regulatory protein, LuxR n=1 Tax=Mycobacterium vanbaalenii PYR-1 RepID=A1TGW8_MYCVP Length = 921 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 155/909 (17%), Positives = 279/909 (30%), Gaps = 91/909 (10%) Query: 36 LITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAA-------------- 81 LI AG GKTT+ + + G+ L Q E ++ A Sbjct: 34 LIEGDAGIGKTTMWNTVVQRAAEAGFVVLTARAGQAESGLAHAAVADLLSAVDPEIVDAL 93 Query: 82 --VQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 +Q+ G + + + T+ + A +P+ + IDD + Sbjct: 94 PDMQRLAAGRVQLRDHAGGRPADERATAAALLSAVHAAGARAPVLIAIDDVQWLDASS-R 152 Query: 140 ESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA------FTHQEAKQ 193 + F R + +V R Q + R L ++G+ LA + Sbjct: 153 AVLAFAARRLKGAVGVVATERTGQQ---SQERAASWL-QVGTGGLARVQVAPMSLGALHS 208 Query: 194 FFDCRLSSPIEAAESSRICDDVSGWAT-ALQLIALSARQNTHSAHKSARRLAGINASHLS 252 RL RI + G AL+L + + LA + + Sbjct: 209 MLSDRLGRRFSRPAIVRIAEASGGNPLYALELARVMDGDMLRPGVRLPSTLAEVVGLRV- 267 Query: 253 DYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE--ENGQMRLEEIERQGLFLQR 310 D +D R LL +A + L+ + E LE E +G + Sbjct: 268 --------DKLDDDVRDVLLVAASVTQPTVDLLAQTLAVRAEQVTALLESAEVEG--VIA 317 Query: 311 MDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDA 370 ++ F HPL + A E HR A+ + A H ALAA A Sbjct: 318 IEGNRVRFT-HPLLAS---GIYDSAAPARRREFHRRLAD--IQTQPELRARHLALAATVA 371 Query: 371 LMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNT 430 L+ A L L + + A Sbjct: 372 DDATLATLDAAADSARARGAPAAAAELVELAIRLGGDRVSRRIRAAEHHYVAGDMPRAAE 431 Query: 431 LLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA 490 LL + D+R + A LRA V I + + A L + A + R+ + Sbjct: 432 LLDQVTG---DLRPGVLRAIALNLRAGVRIFEDDYAGAVVLLERACADAADNDE-VRVSS 487 Query: 491 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 550 L G A + +A + V +L + G Sbjct: 488 LVALAFAQGMVGAFEDQFASALRAVAVAERAGVPALTSQALTTWVYVRLQAGG-GLDGPA 546 Query: 551 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 610 +A +L E P+ ++ L +L++A+ + + L Sbjct: 547 LRRAVEL--EGADGDTPIPFRASAMQGLALAVTGQLEDADRQLAEIAQRCLHRGAEHDLM 604 Query: 611 C-LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 669 ++ RG D+A +LL + ++ A + G++ A Sbjct: 605 AVTGYRTLIAIWRGRFDDAGRL---AADLLERARQVGGSMALAMSICAAAAAYRGEETQA 661 Query: 670 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 729 + R + + +A ++ LGE A E L R + Sbjct: 662 REFARQALEQGAGHVPLTAWARATLAFLEVSLGEHHRAVEAAEPLMALYRPFSGTEVITG 721 Query: 730 NLL-LLNQLYWQAGRKSDAQRVLLD------------ALKLANRTGFISHFV--IEGEAM 774 + L + GR DA++++ L + NR + A+ Sbjct: 722 SFLPDAAEALIALGRHDDAEQMVGALERNGAALDRPWMLAVGNRCRALLLVAQGDLDGAL 781 Query: 775 AQQLRQLIQLNTLP------------------ELEQHRAQRILREINQHHRHKFAHFDEN 816 R + + + LP + A++I+RE + + + Sbjct: 782 GAVERAMAEHDRLPMPFERARTQLVMGEVLRRLRRRDAAEQIVREALRQFDGLGSPVWAD 841 Query: 817 FVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQ 876 ++L + LT E ++ + SG SN+++A L V+ T++T++ +Y+ Sbjct: 842 RARKILARVNGSGRSGSVVLTDSELRIAEHVASGMSNKEVADALYVSVKTVETNLTRVYR 901 Query: 877 KLGVAHRQD 885 KLG+ R Sbjct: 902 KLGIRSRAQ 910 >UniRef50_D2SB90 Transcriptional regulator, LuxR family n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SB90_9ACTO Length = 910 Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats. Identities = 152/915 (16%), Positives = 275/915 (30%), Gaps = 79/915 (8%) Query: 22 LLAKLSGANNFR--LALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLI 79 L A L A +AL+ PAG G+TT++ ++ D + +S Sbjct: 20 LDALLDRARTGGPVVALVEGPAGIGRTTVLRRFLHRHAD---LQVTAAAGLPWE-SSRNG 75 Query: 80 AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 A ++ + L + A + E PL +V+DD H +PV Sbjct: 76 ALARRLLDDDPRHLPAPPDAADAVDLGTALAGRW-ESRAGEGPLVVVVDDAH-CADPVSL 133 Query: 140 ESMRFFIRHQPENLTLVVLSRNLPQLGIANLRV---RDQLLEIGSQQLAFTHQEAKQFFD 196 +++ + + LV+L+R R D+L + E + Sbjct: 134 QAITSGLARLRDVAVLVLLARATGWPAAGEPRAVEVLDRLPAVPVPVPPLGPAETRLLAA 193 Query: 197 CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLV 256 + + + + R+C + L T A S + S + V Sbjct: 194 RIAAVDLPLSVARRLCTHT----AGIPRHLLELLNETPPARWSDWQTRLPVPSRVQQR-V 248 Query: 257 DEVLDNVDLATRHFLLKSAIL-RSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTG 315 LD R + +A+L + A + + L+E GL Sbjct: 249 RRTLDGCPRPARALVEAAAVLGPTPVLADAAALAEVSDPIGALDEACAAGLLEATAGHGL 308 Query: 316 EWFCY---------HPLFGNFLRQRCQWELAAEL-----PEIHRAAAESWMAQGFPSEAI 361 + + H R R A + HR A G E + Sbjct: 309 DTLAFPERFVRDAVHATLTPAARHRLHLRAATLVTDDTDRLRHRVEAAPLPDAGLAEELV 368 Query: 362 HHALAAGDALM----LRDILLNHAWSLFNHSELSLLEESLKALPW--------------D 403 A D ++ S + L E++ AL + Sbjct: 369 ELARRKADEGAWAVVAGALIDAGRISPSRAAREERLLEAVDALAGAGLLGQAVDALPEVE 428 Query: 404 SLLENPQLVLLQAWLMQSQHRYGEVNTLLARA-EHEIKDIREDTMHAEFNALRAQVAIND 462 +L P+ + A++ + R E + L A H D R + + + L A+ D Sbjct: 429 ALPSGPRRDAVLAYVAVQRGRRAEAVSYLDTAWRHRGSDRRAAAVVCQRHVL---HALAD 485 Query: 463 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 522 + DE R A A E PG + + + +++G L G + + +Q + Sbjct: 486 WDGDELVRWAGRAGEYAEPGA-PAAVESRAIVGLGLAACGAVDAAFTAYRQAVAESPSGP 544 Query: 523 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ-LLW 581 S + + AQ + A E A + + +++ + + R + +L Sbjct: 545 QHQ---RSRMGLGWLSLAQDEPEAARRELESAVPTVRQTGSKRISLWALVWLARTRFVLG 601 Query: 582 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 641 W +A A + + + Q RG+ + A L L Sbjct: 602 DWPGALDAVNQAEVLLGTTGLDLLRPLVHWTG--AQVRALRGEQEAAERHL--LLGAAAE 657 Query: 642 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT---AKPEFANNHFLQGQWRNIARAQ 698 Y + A R + D A L + A A Sbjct: 658 HDYTVRTVP-ALLARASVAEAASDYDAVVRHLTPLVLRTPRGGLDEPGFWPWHDVYANAL 716 Query: 699 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK-- 756 ++ G AE L R S R + +L G A+ A Sbjct: 717 VVTGRLPEAEAFLAPHEATVRRRGHRSAGARLGYVRGRLLAARGDLLGAEEAFDQARAQL 776 Query: 757 --LANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFD 814 L G + + R+ L Q A + + + Sbjct: 777 AGLPMPYERARVDFAHGVTLRRVGRRRDAAALLTTARQSFAALGAQVYVERCDREL---- 832 Query: 815 ENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNL 874 + T LT++E V L+ +G +N+++A + ++ T++ H+ + Sbjct: 833 -----KTGRPAPRAAEPGTENLTEQERTVATLVATGLTNKEVAASMLLSVKTVQFHLTRI 887 Query: 875 YQKLGVAHRQDAVQH 889 Y KLGV R + Sbjct: 888 YAKLGVRSRSELAAR 902 >UniRef50_C7QKM8 Transcriptional regulator, LuxR family n=2 Tax=cellular organisms RepID=C7QKM8_CATAD Length = 1084 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 149/913 (16%), Positives = 267/913 (29%), Gaps = 125/913 (13%) Query: 89 HCAICETMAQKRQYASLTSLFAQLFIELAEWHSP--LYLVIDDYHLITNPVIHESMRFFI 146 H + + + + LF + L + S L LV++D H + + + F Sbjct: 183 HSDALPAVTRAGEQSVRGHLFDAVLGLLEDLGSDETLLLVLEDLHW-ADRSTRDLLGFLS 241 Query: 147 RHQPENLTLVVLS-------RNLPQLGIANLRVRDQLLEIGSQQLA-FTHQEAKQFFDC- 197 R ++ LVV + R P L D++ + L T E + Sbjct: 242 RSLRDSRVLVVGTYRTDDLHRGHPLRPF--LAELDRIRGVRRIDLGPLTTGETAEQLAAI 299 Query: 198 --RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYL 255 R + + + G + + G S L Sbjct: 300 YGRTGRDLPPGFAEEVFARAEGNP----FFTEELACAADGSSLMPSDVGGFALSDTLRDL 355 Query: 256 VDEVLDNVDLATRHFL-LKSAILRSMNDALITRVTGEENGQ--MRLEEIERQGLFLQRMD 312 + ++ + T+ L L SA L ++ + VTG + + ++ + + + Sbjct: 356 LLIKVEQLPEPTQRMLRLLSAALPPVDHRFLLLVTGATDDELNEQIRPAFQAHILI--PG 413 Query: 313 DTGEWFCY-HPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA-------IHHA 364 + + + H L + L E +HR AE A+ A HH Sbjct: 414 EGPTSYRFRHALLREAVHNEL---LPGEHSALHRKYAELLEAEPSLVAAEAREVELAHHW 470 Query: 365 LAAGDALMLRDILLNHAWSLFNHS----ELSLLEESLKALP--WDSLLENPQLVLLQAWL 418 +A D D L A + E +LE +L ++ LE +L+ A Sbjct: 471 YSARDYPRAYDAALRAAEAADARYAYVEEHQMLERALDLWDQVPETGLEYARLLYKTACA 530 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVA------------------- 459 +L +A + ++ + A + LR++ Sbjct: 531 AHLAGDPHRALSLTDKALKRVDPDQDPELAALLHHLRSRDHHILGRGDGMADIWAALDLV 590 Query: 460 ---------------------INDGNPDEAERLAKL-ALEELPPGWFYSRIVATSVLGEV 497 + + D A R A+ AL RI A G V Sbjct: 591 DGEQCPQVRVQITNSASFIKMLTSDDIDAALRFAEETALLADKIDSDLYRIAAAITKGTV 650 Query: 498 LHCK---GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 554 L + G LA+++Q + I L Q A + Sbjct: 651 LAGQVSLGTHEEGLAILRQAIIDGLGYGDPGIIGRGYINLCSALETLDRHQEAVQVARAG 710 Query: 555 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 614 + + + L A+ L A + A+A+ S +++ Sbjct: 711 LAELKRRGVRLRVAESMLWLNMAESLIALGDWEGADAALTSSLDL--DPPGIHGATTHEY 768 Query: 615 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 674 L +L GD ++AR + + H + + +T + A + Sbjct: 769 LADLALLGGDAEHARGEAALGARIPSRTFEHQYALPGIRREIEKAVWLTRSISDARTAFQ 828 Query: 675 H-TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 733 KP+F + + WR + + + + ARS D + + Sbjct: 829 VFLDKPQFLGDE--RYAWRVLTAMAMAEADHAELRRSAQPTRAAARSGTSAVDAAGS-AM 885 Query: 734 LNQLYWQAGR-----------------------KSDAQRVLLDALKLANRTG-------- 762 + L +AGR A +LA R G Sbjct: 886 VAALAERAGRLPALTPSQAAAAAQVAAELARWRGVAGAAEWATASELAAREGVHAHQAAY 945 Query: 763 --FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVER 820 F + +L++ L R + D Sbjct: 946 INFRASEASAANGDRDHAAELLRRAVKAIATLPAGPLCLEVQALARRARLDISDCMPEAP 1005 Query: 821 LLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 + + LT RE +VL L+ G SN QI L ++ T H+ N+ KLGV Sbjct: 1006 VPGGGRGADSGSPLGLTARELEVLALVAQGLSNRQIGERLFISTKTASVHVSNILAKLGV 1065 Query: 881 AHRQDAVQHAQQL 893 + R +A A +L Sbjct: 1066 SGRGEAAAVAHRL 1078 >UniRef50_Q5QES7 AmphRI n=2 Tax=Streptomyces nodosus RepID=Q5QES7_9ACTO Length = 948 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 158/933 (16%), Positives = 274/933 (29%), Gaps = 93/933 (9%) Query: 29 ANNFRLALITSPAGYGKTTLISQWAAGKND------IGWYSLDEGDNQQERFASYLIAAV 82 R A++T+P+GYGK+ L+ G L A Sbjct: 21 HGETRCAVLTAPSGYGKSALLDALLRSPACQDMTVLRGRCGGASAGAGAYAGLRTLFAPA 80 Query: 83 QQATNGHCAICETMAQKRQYAS------------LTSLFAQLFIELAEW--HSPLYLVID 128 H + +F +L + PL LV+D Sbjct: 81 DAPAPDHHPEAAGADDPAVFLPGPGDGRPFTLTSAYPVFRRLSSHVLRLTADRPLVLVLD 140 Query: 129 DYHLITNPVIHESMRFFIRHQPENLTLVVLSRN-----LPQLGIANLRVRDQLLEIGSQQ 183 D H + + F +R LV+L+R+ A+L + Sbjct: 141 DAHHCDEHSL-RWLDFLLRRAAGRPLLVLLARSSGAQLRAPRAWADLLAHPAVSVTSLGP 199 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L P + ++ +G ++ + R + ++ + Sbjct: 200 LG--ADAVGGLARQVFGVPAHPLLAQQVAAVTAGNPRTVERLLGELRSQGAAPDEAGAQR 257 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN---GQMRLEE 300 A ++ V ++LD R A+L V + + + Sbjct: 258 ASELGGAMAAGSVRQLLDREPPEVRSVATAIALLDGTRPPECVTVLADVDQAQADEAIAV 317 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAEL-PEIHRAAAESWMAQGFPSE 359 + G D G L +R L + E+H AA G P E Sbjct: 318 LRHAGALT--PDGAG-------LVHEAVRSELLEPLGSRRTAELHARAALLLSDAGRPVE 368 Query: 360 AIHHALA----AGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 + L A + M +L + A + L+ + ++ ++ + L Sbjct: 369 QVAQHLMRMPCAQEPWMSA-VLRDAAARAEQRGAFAEAAGYLRRV-LEAEPDDAEARLRL 426 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQV---AINDGNPDEAERLA 472 A + + V + ++ + A A A Sbjct: 427 ALAVAPEDPLSAVPLFRTALAGTPDTFARAGIAVQYAMACLSLPLPATCRAEILGALEAA 486 Query: 473 KLALEELPPGWFYSRIVATSVL------------------GEVLHCKGELTRSL------ 508 + AL P VA +L + +L ++ Sbjct: 487 RDALGSGPERDRLRDQVAAVLLLMGRRGTGVAARQHPVTAALPYQPRTDLLQAEALAGLR 546 Query: 509 -ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ----GFLQTAWETQEKAFQLINEQHL 563 AL + + A + A S Q +LF G E ++ Sbjct: 547 TALAGHSRETALKEARHAVAAASPQQPPWLLFTAAITLGLADETTEAHRALDAMLRRGGD 606 Query: 564 EQLPMHEFLV-RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLA 621 E L +R+ LL + +A A ARS I+ + + + A+L + Sbjct: 607 EPTAWVRVLAGSLRSFLLHRDGAVLDAAAEARSAIDTVDRTGCDVRLVAARAVLASVLVD 666 Query: 622 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH---TAK 678 RG+ A L+R+ + + + + R + TG A A LR + Sbjct: 667 RGEPRQAERLLSRMGRTEPHRSALASLLYLHARARTRWA--TGHPAQALRLLRECGWAQE 724 Query: 679 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 738 N L W + IL PA+ R+ R + L L + Sbjct: 725 TAGVQNPVLAPWWAD--TCLILAAVRRPADGRELAEQGAERARRWGTPRALGLAALAEGV 782 Query: 739 WQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRI 798 GR +L +A + + ++ + A+ Q L Q E + A Sbjct: 783 LTPGRAG--LDLLTEAAHQLSTSPAVAEYARAEHALGQALLQYGDEAGARERLRRAAGIA 840 Query: 799 LREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAG 858 + R+ + P P LT E +V GL SG SN QIA Sbjct: 841 GGCGALALAESARRLLVSAGGRMGHTPGTPAGGL---LTTTELKVAGLAVSGASNRQIAQ 897 Query: 859 ELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 L V T+++H+ N+Y+KLGV R V + Sbjct: 898 RLFVTVRTVESHLTNVYRKLGVRRRDQLVVALR 930 >UniRef50_A4FEF8 Large transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FEF8_SACEN Length = 946 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 140/928 (15%), Positives = 271/928 (29%), Gaps = 91/928 (9%) Query: 34 LALITSPAGYGKTTLISQWA-AGKNDIGWYS------LDEGDNQQERF------------ 74 + + AG GKT L+++ A +++ W + L + F Sbjct: 30 VVFVEGEAGIGKTRLVNELLVAVRSESVWVTTGYCQPLRDPFPHGVVFECLGGCAKRLSA 89 Query: 75 ---ASYLIAAVQQATNGHCAICETMAQKRQYASLT-SLFAQLFIELAEWHSPLYLVIDDY 130 S + +++ + + + +L + +V++D Sbjct: 90 SGRLSAVTGSLRPYLPELADRLPPAPEPLGDQAAERHRLFRAVRDLLAALGRVVVVVEDI 149 Query: 131 HLITNPVIHESMRFFIRHQPENLTLVVLSRNL--PQLGIANLRVRDQLLEIGSQQLAF-- 186 + + +RF + P L+LVV R P A R S L Sbjct: 150 QW-ADEGSRQLLRFVMTDPPPGLSLVVTYRREELPGRSAALGRAFRPSPGTSSAHLVLGP 208 Query: 187 -THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR--- 242 +E + L +P+ + + +G L+ + RQ R Sbjct: 209 LEPEEVRGLAQAILGTPVSHEFAVDLHGGTAGIPFVLEETLHALRQREGGIRPDGRGAKR 268 Query: 243 -LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSM-NDALITRVT--GEENGQMRL 298 LA + L + E LD + R +A+L + AL+ +T + Sbjct: 269 MLAELEVPALLREAMLERLDGLPAHARALAECAAVLNCPADVALLASMTMLAPARAGTAV 328 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG--- 355 ++ G+ ++ D + Y R E+H A Q Sbjct: 329 SKLLTAGVLVE---DEDGRYRYRHPLAQ--RAVYYALPGPRRQELHNRALRMLARQDPRP 383 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKAL---PWDSLLENPQLV 412 A HA AG A + + E +L P + +LV Sbjct: 384 LLMLA-EHAKRAGQHAARLRYGEEAAALAMQAGDATTAVELRLSLVAEPAVPPADVNRLV 442 Query: 413 LLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLA 472 + EV L R + + + + +G + Sbjct: 443 SRLCQDALTGLHQHEVTAELERLLPDTRLSEDVRGEVRLGLGLLLI-RQEGALERGRVEV 501 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 +LA+++L + + +VL L ++ +Q+ E+ L Sbjct: 502 QLAIDDLGTRPDLA-LRGMAVLALPYIGITPLAENMRWLQRIERELGAVPRGLSGFAVLA 560 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 G AW+ + L ++ ++ L A +AE Sbjct: 561 NSIGGRMHVGDP-LAWQQLARVDPLSDDVGEQR--HIARLYCNLADSCSWTGHYQQAERF 617 Query: 593 ARSGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 R+G+ V + + A I+ G R L ++ +S Sbjct: 618 IRNGLSVAARCGAPYVVGTAEATRIRLDWMAGRWAG---LQERAWQLAETYQHLMPVVSE 674 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTA--KPEFANNHFLQGQWRNIARAQILLGEFEPAEI 709 + V G+ AA T P + + + + ++ + A Sbjct: 675 LHLVLGWTDAAHGNWDGAAEHFARTGLSDPGNSIAPVMLAAFGGVVSVRLAQDDVVEACR 734 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD---------------- 753 + E R + + + + Y AGR +DA++V + Sbjct: 735 QADRGLEVFRHKGVWAWAGELVPEAVEAYCAAGRTADAEKVTEELAVGLSSLDAPLAEVA 794 Query: 754 --------ALKLANRTGFISHFVIEGEAMAQQL--RQLIQLNTLPELEQHRAQRILREIN 803 A + F G + + +++ L + E+ Sbjct: 795 LLDCRARIAAHRGRPSAAAQEFHRAGRTYERLGVPYRALRMAELAAHHAPGGPDGMGELA 854 Query: 804 QHHRHKFAHFDENFVERLLNHPEVPELIRT------SPLTQREWQVLGLIYSGYSNEQIA 857 + A D LL R + L+ RE V L+ G +N +IA Sbjct: 855 DRYAELGATRDAARCRHLLRSHGTTTPSRRGRRGYGNELSPREQDVARLLAGGRTNREIA 914 Query: 858 GELEVAATTIKTHIRNLYQKLGVAHRQD 885 L ++ T++ H+ + +KLG A R + Sbjct: 915 EALFLSRRTVEQHVARVLRKLGAASRTE 942 >UniRef50_C5C1K1 Transcriptional regulator, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C1K1_BEUC1 Length = 872 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 154/896 (17%), Positives = 273/896 (30%), Gaps = 64/896 (7%) Query: 14 DHTVVRERLLAKLSGANNFR------LALITSPAGYGKTTLISQWAAGKNDIGWYSLDEG 67 + RER LA L+ + + LIT AG GKT+L+ ++ A Sbjct: 10 PQLLERERELAVLAAVVDRARQGEGGVVLITGEAGVGKTSLVRRFLA------------- 56 Query: 68 DNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVI 127 D R L + A + E R + A + E PL LV+ Sbjct: 57 DADGVRSRVGLAEDLVAART-LGPLREMFPDVRDLHEPGAALAAVEAEARAGPGPLALVV 115 Query: 128 DDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFT 187 DD H + + E +R R E L LV++ P A+ +R L + Sbjct: 116 DDAH-LADAATFEVLRSLGRRA-ETLPLVLVLAYRPDEVGADHPMRRALGVL-------- 165 Query: 188 HQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGIN 247 + + + + L + + T L G Sbjct: 166 ---VGAHVHRLELHGLSEGAVAALAERSGLDPARLAGLGGNPFYLTEVLAAPDSDLPGAV 222 Query: 248 ASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLF 307 + + + TR L A++ + L + LE ER GL Sbjct: 223 RDAIVGRV-----HGLPAPTRDLLEMLALVPR-DADLGLFDGLAADVTASLERAERSGL- 275 Query: 308 LQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG-FPSEAIHHALA 366 R+ + F H + L + +HR ++ + P+ +HHA+ Sbjct: 276 -VRVTEGRVAFR-HDIARRALEASLPQ---SRRVHLHRRILGAFEDRRADPAVLLHHAVL 330 Query: 367 AGDALMLRDILLNHAWSLFNHSELSLLE----ESLKALPWDSLLENPQLVLLQAWLMQSQ 422 A + + A S + +L+ + E +L + A + + Sbjct: 331 ASEDDAVARHAPEAARSAAHGDAHREAVTICGLALRRPDLLTHAEQAELHGIAARALYAA 390 Query: 423 HRYGEVNTLLARAEHE-IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-P 480 R + RA + D + A++ PD + + ALE L P Sbjct: 391 GRLPDAARSANRAVAIWERRDPSDPQYGAALLTSARMQTMVARPDSSLAQVRRALEVLEP 450 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 G A +L + G+ ++ ++ MA A S + L Sbjct: 451 AGASPLLATAHEMLANLQSIAGDSESAMGSAERARAMAVDLGERLIAARSDMHLGIALAG 510 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 600 G A T ++ + + + A L W R+ EA V Sbjct: 511 LGEDAEALSTLRRSVETLALLDAPEPYARATGAM--AVTLVWWGRVAEALEWLDLTDRVA 568 Query: 601 SSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 659 S + +L +A+ +G D A + L L + + ++ ++ + Sbjct: 569 SEHGFDLLRLHGVAIRAHAHTLQGRWDAAEAALRPLLQVDLGAAINPLPLAFLGRILLRR 628 Query: 660 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 719 GD+ W A + I + L A L E + Sbjct: 629 GDADGDRLVDEAWPLALATGQVRR----IAPVAAIRTERAWLRRDPGAVRSLGEHALDVA 684 Query: 720 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLR 779 + + L +L +AG + + R + EA Sbjct: 685 AQGHLRYLGGEVLRY---LRRAGDDVEVFPGCPEGFAAGIRGDHAASAAAWEEAGNPYEC 741 Query: 780 QLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENF--VERLLNHPEVPELIRTSPLT 837 L + R IL + D V + LT Sbjct: 742 ALELAESDDPAIAGRGVTILDRLGARATADRVRQDLRVRGVGPVPRRSAPARATTALGLT 801 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 R+ ++LGL+ G ++ +IA L ++ T+ H+ ++ LGV R+DAV ++ Sbjct: 802 PRQHEILGLVARGLTSPEIADCLYLSRRTVDNHVADVLAALGVPSRRDAVATFRRH 857 >UniRef50_B7A6Z2 TPR repeat-containing protein n=4 Tax=Thermus RepID=B7A6Z2_THEAQ Length = 738 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 116/630 (18%), Positives = 199/630 (31%), Gaps = 77/630 (12%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGA-NNFRLALITSPAGYGKTTLISQWAAGKNDIGWY 62 PS+L P V R R L + A ++ + GYGKT+L ++ + Sbjct: 7 PSRLRPPRTARE-VSRLRPLGLVEAAFGKSPGVVLAAGPGYGKTSLAAE-----MGGIYL 60 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP 122 +L E F +L+ A + A A+ + + L P Sbjct: 61 ALAEEAKDPAVFLWHLLYAYR-----DRAGLSEAARLLEGGAWPRALEAFLEALEPLG-P 114 Query: 123 LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 LV+D+ H +P + +++ R L L+ L + Q Sbjct: 115 QLLVLDEAHRAESPGVLKALEGLCRLPSLRLLLLSR--KAAPFAF--------LTVLTEQ 164 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 +LAF +EA L+ + A E R V GW L+++ L+ R+ Sbjct: 165 ELAFDPEEAWALAKA-LAPELPAFEVERAHSLVRGWPLGLRVVLLAMRRGLRP------E 217 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 LA + L YL + + A+L + + + + L Sbjct: 218 LALESGEGLLTYLA----YGLPQELLLKAARLALLGEVPEEEAQDLL--PYAEDLL---- 267 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIH 362 ++ +HPL + L+ AE E+ AAE+ + QG A Sbjct: 268 --------LERRPGRLAFHPLVRSALKALLPE---AEARELLAQAAETALHQGEGVRAAE 316 Query: 363 HALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQ 422 L AG D+LL + + L LP L LL+A ++ Sbjct: 317 FLLEAGRFGHAADLLLKEGQAWLERGLTYTVLRLLAHLPEGVRRGRTGLFLLEAEALRQA 376 Query: 423 HRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG 482 RY E RA + ++ ++ P A + AL+ P Sbjct: 377 GRYREAEAAYQRA--------LEAGEGRAYLGLVRLFLDTVEPARARPYLEEALKRFPEE 428 Query: 483 WFYSRIVATSVLG-------------EVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 G VL G +LAL+++ + H Sbjct: 429 ASPLLAENLLNEGRPEEALALGLSGPRVLLRLGRPDEALALLKEAQDPG-LHRPPQNHRE 487 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR-AQLLWAWARLDE 588 + ++ + G A E A + E + P L R L A R E Sbjct: 488 GTLLRALLECVAGD---AEEGLRFAERGRFEAEVLGSPFGVSLAEARKGHALLALGRPAE 544 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQC 618 A + ++ + + + +++ L L Sbjct: 545 ARGAYQTALALAEGGPARLRVEALGGLAAL 574 Score = 41.9 bits (97), Expect = 0.100, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 99/299 (33%), Gaps = 27/299 (9%) Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 L + AL+ L P ++A + E +GE R+ + + + D+ Sbjct: 278 HPLVRSALKALLPEAEARELLAQA--AETALHQGEGVRAAEFLLEAGRFGHAADL----- 330 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 L+++ + +G T + + L + A+ L R E Sbjct: 331 --LLKEGQAWLERGLTYTVLRLLAHLPEGVRRGRTG-------LFLLEAEALRQAGRYRE 381 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR------LENLLGNG 642 AEA+ + +E ++ ++ + AR L+ A + ENLL G Sbjct: 382 AEAAYQRALEAGEGRAYLGLVRLFLDTVEPARARPYLEEALKRFPEEASPLLAENLLNEG 441 Query: 643 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI--L 700 + + RV+ D+A A L A+ + + + RA + + Sbjct: 442 RPEEALALGLSGPRVLLRLGRPDEALA---LLKEAQDPGLHRPPQNHREGTLLRALLECV 498 Query: 701 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 759 G+ E E A L ++ GR ++A+ AL LA Sbjct: 499 AGDAEEGLRFAERGRFEAEVLGSPFGVSLAEARKGHALLALGRPAEARGAYQTALALAE 557 >UniRef50_A8LZB2 Transcriptional regulator, LuxR family n=1 Tax=Salinispora arenicola CNS-205 RepID=A8LZB2_SALAI Length = 975 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 133/847 (15%), Positives = 263/847 (31%), Gaps = 78/847 (9%) Query: 113 FIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRV 172 L L +DD H +P + + + + +++ + ++ +R Sbjct: 132 LTGLVGRDRGCLLSLDDLHD-ADPETLAVLEYLVDNVELQPMMLLGALRDEGPAMSMVRA 190 Query: 173 ---RDQLLEIGSQQLAFTHQEAKQFFDCRLSSP---IEAAESSRICDDVSGWA-TALQLI 225 R I + E Q L + A+ + SG A +LI Sbjct: 191 AARRGACQLIDLD--RLSRAELAQLAGACLDVEPDLVPASAVDLLWAGSSGNPLVAEELI 248 Query: 226 ALSARQNTHSAHKSARRLAGINASHLSDYLV---DEVLDNVDLATRHFLLKSAIL-RSMN 281 + + + +++G + +S L + + R L +A+ + Sbjct: 249 STMVDEGILVGDEHGWQVSGYPEASMSAGLACPLSRRVAQLGARARELLSVAAVFGQQFP 308 Query: 282 DALITRVTGEENGQMRLEEIER--QGLFLQRMDDTGEWFCYHP-LFGNFLRQRCQWELAA 338 +I VTG + + L ++ G + + +W+ +H L + + + A Sbjct: 309 LNVIQHVTGLAD-RDLLGLLQNDVAGRLVAPDEQAADWYAFHHQLSREAVLAQLDRDEHA 367 Query: 339 ELPEIHRAAAESWMA---QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSE----LS 391 L A E+ + + A + AGD + ++ Sbjct: 368 RLAGALATAVEAIHPGLPREWCEAAARLRVDAGDRATAGTLFTEAGRRALALGAANSAVA 427 Query: 392 LLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEF 451 +L+ +L+ LP D + + L + ++ + A Sbjct: 428 VLDRALEYLPHDDVATRAGTLELLLQALAEAGLVERALASVSELDQA--GGLGPRRRAAL 485 Query: 452 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG----ELTRS 507 + A A G ++ + A L + V+ L +L + Sbjct: 486 HTRLAWAATIAGRTEDGLAQVETARALLGSEGSAEDLAPIDVVAAHLLLDAAGPDQLAAA 545 Query: 508 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 567 L +Q ++A + A + + + Q A E+A L L Sbjct: 546 ERLARQAAEVAESAPLPVVACQAWQLVGGLARHR-DPQEATSFLERARTLAVRHGLPICE 604 Query: 568 MHEFLVRIRAQLLW--AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL 625 +H + L RL+ A A A V + YQ + + +L GDL Sbjct: 605 IHTLIRLGNDDALRVGDLTRLERARAQATQMGAVTAQYQAEASIALHTVL------HGDL 658 Query: 626 DNARSQLNRLE------NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR----H 675 A S +++ LL +Y + R QM + A W H Sbjct: 659 AAAASLTDQVLAATTRLKLLETTQYVLLTRAVLAGHRGDRHQMEAELAGFEQWGGDLTLH 718 Query: 676 TAKPEFANNHFLQGQWRNIARAQILLGEFEPA----------------EIVLEELNENAR 719 + F ++ RA+ L A ++L+ L A Sbjct: 719 APRAYGLAAAFCALLEEDLPRARADLARAVAAEEHGSSVYFLSGRHGLHVLLQALAGQAE 778 Query: 720 -----------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF- 767 + L D L+ ++G A + + DAL H Sbjct: 779 WPDLEAVAVNPASTLRWDRQFTFFAHAVLHGRSGHHDRAAKAMTDALAAGEPYETSRHLG 838 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 + A ++ L E H + + + R +R + Sbjct: 839 LRLVSEAALTDGWGEPVSWLRIAEDHFHRTDVPAVAGACRALLRRAGATVRQRRDGAQGI 898 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 P +R++ +T RE++VLGL+ N +IA L ++ T++ H+ +L K G+ +R Sbjct: 899 PNELRSAGVTVREYEVLGLVVKRLGNREIANRLHLSPRTVERHVHSLMTKTGLPNRIALA 958 Query: 888 QHAQQLL 894 + + + Sbjct: 959 EFGAEFV 965 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7N5N6 HTH-type transcriptional regulator malT n=66 Tax... 626 e-177 UniRef50_A8GKU0 HTH-type transcriptional regulator malT n=171 Ta... 614 e-174 UniRef50_Q2SPN4 Maltose regulon positive regulatory protein MalT... 534 e-150 UniRef50_B8CZU7 Regulatory protein LuxR n=3 Tax=Firmicutes RepID... 530 e-148 UniRef50_C0Z6I1 Probable transcriptional regulator n=1 Tax=Brevi... 509 e-142 UniRef50_C4X459 Trans-acting regulatory protein of aco operon n=... 507 e-142 UniRef50_C0Z8V4 Probable transcriptional regulator n=2 Tax=Bacil... 499 e-139 UniRef50_A9WHL2 Regulatory protein LuxR n=3 Tax=Chloroflexaceae ... 490 e-137 UniRef50_A4VQ60 ATP-dependent transcriptional regulator n=4 Tax=... 487 e-136 UniRef50_A1U0Z9 Regulatory protein, LuxR n=2 Tax=Marinobacter Re... 484 e-135 UniRef50_B0C3T1 Transcriptional regulator, LuxR family with TPR ... 479 e-133 UniRef50_C0ZJP0 Probable transcriptional regulator n=1 Tax=Brevi... 476 e-132 UniRef50_D1RTE8 Transcriptional regulatory protein n=1 Tax=Serra... 465 e-129 UniRef50_Q2SEA9 ATP-dependent transcriptional regulator n=1 Tax=... 464 e-129 UniRef50_C6D3K4 ATP-dependent transcriptional regulator, MalT-li... 463 e-128 UniRef50_A9AVE7 ATP-dependent transcriptional regulator, MalT-li... 462 e-128 UniRef50_C5RKV5 ATP-dependent transcriptional regulator, MalT-li... 453 e-125 UniRef50_A4BAG8 ATP-dependent transcriptional regulator n=1 Tax=... 448 e-124 UniRef50_C6CXC3 ATP-dependent transcriptional regulator, MalT-li... 447 e-124 UniRef50_A9B4I5 ATP-dependent transcriptional regulator, MalT-li... 442 e-122 UniRef50_UPI0001789493 ATP-dependent transcriptional regulator, ... 441 e-122 UniRef50_UPI000178942B ATP-dependent transcriptional regulator, ... 438 e-121 UniRef50_B8KM86 Transcriptional regulator n=3 Tax=Gammaproteobac... 437 e-121 UniRef50_A9B6R2 ATP-dependent transcriptional regulator, MalT-li... 433 e-119 UniRef50_B8G442 ATP-dependent transcriptional regulator, MalT-li... 433 e-119 UniRef50_C6XP68 ATP-dependent transcriptional regulator, MalT-li... 432 e-119 UniRef50_Q1N117 Probable transcriptional regulator n=1 Tax=Berma... 430 e-118 UniRef50_B5WTD5 ATP-dependent transcriptional regulator, MalT-li... 423 e-116 UniRef50_A9B3X7 ATP-dependent transcriptional regulator, MalT-li... 414 e-114 UniRef50_Q0K1J2 Transcriptional regulator, LuxR-family n=1 Tax=R... 413 e-113 UniRef50_Q396V4 ATP-dependent transcriptional regulator, MalT-li... 408 e-112 UniRef50_C1DE28 Transcriptional regulatory protein AcoK, LuxR fa... 408 e-112 UniRef50_Q2SM19 ATP-dependent transcriptional regulator n=1 Tax=... 406 e-111 UniRef50_Q2JAS8 ATP-dependent transcriptional regulator, MalT-li... 404 e-110 UniRef50_A9AZG3 ATP-dependent transcriptional regulator, MalT-li... 403 e-110 UniRef50_B1KGF0 ATP-dependent transcriptional regulator, MalT-li... 400 e-109 UniRef50_A3I8R1 Probable transcriptional regulator, luxR family ... 400 e-109 UniRef50_Q2SIT0 ATP-dependent transcriptional regulator n=1 Tax=... 398 e-109 UniRef50_C0GFP5 Transcriptional activator domain protein n=1 Tax... 395 e-108 UniRef50_A7NS05 ATP-dependent transcriptional regulator, MalT-li... 394 e-108 UniRef50_Q21ZR3 ATP-dependent transcriptional regulator, MalT-li... 394 e-107 UniRef50_Q1LAZ5 ATP-dependent transcriptional regulator, MalT-li... 388 e-106 UniRef50_A4A4M2 Transcriptional regulator malT n=1 Tax=Congregib... 384 e-105 UniRef50_B2TCN8 ATP-dependent transcriptional regulator, MalT-li... 383 e-104 UniRef50_D1UL69 ATP-dependent transcriptional regulator, MalT-li... 382 e-104 UniRef50_Q46V70 Regulatory protein, LuxR:Tetratricopeptide TPR_4... 382 e-104 UniRef50_Q0KDB0 Transcriptional regulator, LuxR-family n=1 Tax=R... 380 e-103 UniRef50_Q21QQ8 ATP-dependent transcriptional regulator, MalT-li... 379 e-103 UniRef50_Q1D1L7 Transcriptional regulator, LuxR family n=1 Tax=M... 379 e-103 UniRef50_A2SJY0 ATP-dependent transcriptional regulator-like pro... 378 e-103 UniRef50_C1AXQ0 Putative serine/threonine protein kinase n=2 Tax... 374 e-102 UniRef50_Q4ZXS3 Regulatory protein, LuxR n=22 Tax=Pseudomonas Re... 373 e-101 UniRef50_Q397N7 ATP-dependent transcriptional regulator, MalT-li... 371 e-101 UniRef50_A2SE70 ATP-dependent transcriptional regulator-like pro... 370 e-100 UniRef50_C8SFS0 ATP-dependent transcriptional regulator, MalT-li... 369 e-100 UniRef50_A7HS86 Regulatory protein LuxR n=1 Tax=Parvibaculum lav... 369 e-100 UniRef50_C1BC55 Putative serine/threonine protein kinase n=2 Tax... 367 e-100 UniRef50_A4XVC8 Regulatory protein, LuxR n=7 Tax=Pseudomonas aer... 367 1e-99 UniRef50_A6CQL5 Transcriptional regulator n=1 Tax=Bacillus sp. S... 365 4e-99 UniRef50_A8VQD6 MMPL domain protein n=1 Tax=Bacillus selenitired... 364 1e-98 UniRef50_A7NKK5 ATP-dependent transcriptional regulator, MalT-li... 363 1e-98 UniRef50_B9K0P0 Two component response regulator n=1 Tax=Agrobac... 362 3e-98 UniRef50_A4XVC9 Regulatory protein, LuxR n=11 Tax=Bacteria RepID... 361 7e-98 UniRef50_Q1LKC5 ATP-dependent transcriptional regulator, MalT-li... 360 2e-97 UniRef50_Q0S014 Transcriptional regulator, MalT family protein n... 360 2e-97 UniRef50_Q39P16 ATP-dependent transcriptional regulator, MalT-li... 360 2e-97 UniRef50_B9NI01 ABC transporter family protein (Fragment) n=4 Ta... 359 4e-97 UniRef50_B4WXQ1 Transcriptional regulator, LuxR family protein n... 356 2e-96 UniRef50_B9JN67 Transcriptional regulator protein n=2 Tax=Agroba... 355 5e-96 UniRef50_C8X673 ATP-dependent transcriptional regulator, MalT-li... 354 8e-96 UniRef50_Q390G0 ATP-dependent transcriptional regulator, MalT-li... 352 3e-95 UniRef50_Q5Z362 Putative serine/threonine protein kinase n=1 Tax... 352 4e-95 UniRef50_C0GFG5 Transcriptional regulator, LuxR family with TPR ... 352 4e-95 UniRef50_A1U449 Regulatory protein, LuxR n=2 Tax=Marinobacter Re... 352 4e-95 UniRef50_A2SP76 ATP-dependent transcriptional regulator-like pro... 344 7e-93 UniRef50_Q2B993 Transcriptional regulator n=1 Tax=Bacillus sp. N... 344 1e-92 UniRef50_A5V8I9 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 343 2e-92 UniRef50_C8XKI9 ATP-dependent transcriptional regulator, MalT-li... 342 3e-92 UniRef50_Q5P612 Putative regulatory protein, LuxR n=1 Tax=Aromat... 341 9e-92 UniRef50_Q13RN6 ATP-dependent transcriptional regulator, MalT re... 340 1e-91 UniRef50_Q0B0H9 ATP-dependent transcriptional regulator-like pro... 339 3e-91 UniRef50_A1HM46 Transcriptional activator domain n=1 Tax=Thermos... 331 6e-89 UniRef50_Q0S8R3 Transcriptional regulator n=1 Tax=Rhodococcus jo... 331 6e-89 UniRef50_Q46TL6 Regulatory protein, LuxR:Tetratricopeptide TPR_4... 331 1e-88 UniRef50_C3JMT5 Putative transcriptional regulator n=1 Tax=Rhodo... 329 4e-88 UniRef50_A9BM99 ATP-dependent transcriptional regulator, MalT-li... 329 4e-88 UniRef50_C7RL93 ATP-dependent transcriptional regulator, MalT-li... 328 8e-88 UniRef50_Q3BPP6 Transcriptional regulator, LuxR family n=6 Tax=X... 327 1e-87 UniRef50_Q0K482 Transcriptional regulator, LuxR-family n=2 Tax=R... 327 1e-87 UniRef50_C1B9T9 Putative LuxR family transcriptional regulator n... 326 3e-87 UniRef50_Q0BZ97 Transcriptional regulator, LuxR family n=1 Tax=H... 326 3e-87 UniRef50_A0R0L7 Transcriptional regulator n=1 Tax=Mycobacterium ... 325 5e-87 UniRef50_A5GBS1 Tetratricopeptide TPR_4 n=1 Tax=Geobacter uranii... 324 1e-86 UniRef50_A5V4S7 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 323 2e-86 UniRef50_C0ZTT3 Putative LuxR family transcriptional regulator n... 322 4e-86 UniRef50_A5GAS8 Transcriptional activator domain n=1 Tax=Geobact... 322 5e-86 UniRef50_B6IXM7 Transcriptional regulator, LuxR family protein n... 321 6e-86 UniRef50_Q1NHC1 Regulatory protein, LuxR n=1 Tax=Sphingomonas sp... 319 4e-85 UniRef50_A3IBY3 Transcriptional regulator n=2 Tax=Bacillaceae Re... 319 4e-85 UniRef50_D1CIB7 Transcriptional activator domain protein n=1 Tax... 317 1e-84 UniRef50_UPI0001C4276F hypothetical protein BpOF4_03975 n=1 Tax=... 317 1e-84 UniRef50_P95078 Probable serine/threonine-protein kinase pknK n=... 314 7e-84 UniRef50_B0RP73 HTH-type transcriptional regulator, LuxR family ... 314 1e-83 UniRef50_A3TJL4 Regulatory protein, LuxR n=1 Tax=Janibacter sp. ... 313 2e-83 UniRef50_Q46UJ4 Regulatory protein, LuxR n=2 Tax=Bacteria RepID=... 310 1e-82 UniRef50_Q1Q7C6 Similar to ATP dependent transcriptional activat... 310 2e-82 UniRef50_UPI0001694022 transcriptional regulator, LuxR family pr... 306 3e-81 UniRef50_P17051 Regulatory protein alkS n=3 Tax=Pseudomonas RepI... 302 4e-80 UniRef50_A3JA10 ATP-dependent transcriptional regulator, MalT re... 301 9e-80 UniRef50_B5EC60 Transcriptional activator domain n=1 Tax=Geobact... 301 1e-79 UniRef50_C8XC62 ATP-dependent transcriptional regulator, MalT-li... 297 1e-78 UniRef50_A8S041 Putative uncharacterized protein n=1 Tax=Clostri... 297 2e-78 UniRef50_B0TA01 ATP-dependent transcriptional regulator, MalT-li... 296 3e-78 UniRef50_Q46PW4 Regulatory protein, LuxR n=1 Tax=Ralstonia eutro... 294 8e-78 UniRef50_A5V9B6 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 292 3e-77 UniRef50_Q0BFD2 ATP-dependent transcriptional regulator, MalT-li... 288 6e-76 UniRef50_UPI0001C310C8 ATP-dependent transcriptional regulator, ... 287 1e-75 UniRef50_C9ZHK9 Putative transcriptional regulator n=1 Tax=Strep... 287 1e-75 UniRef50_A1AUN2 Transcriptional activator domain n=1 Tax=Pelobac... 286 2e-75 UniRef50_Q4KI37 Transcriptional regulator, LuxR family n=3 Tax=P... 285 6e-75 UniRef50_Q3A891 ATP-dependent transcriptional regulator n=1 Tax=... 283 2e-74 UniRef50_B5HWH8 LuxR-family transcriptional regulator n=9 Tax=St... 282 3e-74 UniRef50_C0ZBC0 Putative uncharacterized protein n=1 Tax=Breviba... 276 3e-72 UniRef50_A9WAL3 Transcriptional activator domain n=3 Tax=Chlorof... 276 3e-72 UniRef50_C7H4E9 Transcriptional regulator, LuxR family (Fragment... 273 2e-71 UniRef50_Q67R98 Transcriptional regulator n=1 Tax=Symbiobacteriu... 273 3e-71 UniRef50_A1RBQ1 Putative transcriptional regulator, LuxR family ... 271 1e-70 UniRef50_C7Q4U6 ATP-dependent transcriptional regulator, MalT-li... 270 1e-70 UniRef50_C8X3C0 Tetratricopeptide TPR_4 n=1 Tax=Desulfohalobium ... 270 2e-70 UniRef50_A5VE23 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 269 4e-70 UniRef50_A4XRD7 Regulatory protein, LuxR n=2 Tax=Pseudomonas Rep... 267 2e-69 UniRef50_C1TPX1 ATP-dependent transcriptional regulator n=1 Tax=... 266 2e-69 UniRef50_C8XCA9 ATP-dependent transcriptional regulator, MalT-li... 263 2e-68 UniRef50_A2SDT6 ATP-dependent transcriptional regulator-like pro... 262 5e-68 UniRef50_A1TY93 Regulatory protein, LuxR n=4 Tax=Gammaproteobact... 261 1e-67 UniRef50_Q1NQI1 Transcriptional regulatory protein-like:transcri... 260 1e-67 UniRef50_A5V3K4 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 260 2e-67 UniRef50_Q2SH33 Probable regulatory protein, luxR family n=1 Tax... 260 2e-67 UniRef50_UPI0001C312D5 ATP-dependent transcriptional regulator, ... 258 8e-67 UniRef50_Q5YUK9 Putative transcriptional regulator n=1 Tax=Nocar... 255 7e-66 UniRef50_C5C615 ATP-dependent transcriptional regulator, MalT-li... 254 8e-66 UniRef50_A3UHL3 Transcriptional regulator, LuxR family protein n... 254 9e-66 UniRef50_A5V1C9 Transcriptional regulator n=2 Tax=Roseiflexus Re... 252 6e-65 UniRef50_A5VDQ9 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 248 8e-64 UniRef50_A0R2Z6 Putative serine/threonine protein kinase n=1 Tax... 247 2e-63 UniRef50_A1TX00 ATP-dependent transcriptional regulator-like n=1... 244 1e-62 UniRef50_B8G4C3 Transcriptional activator domain protein n=2 Tax... 242 6e-62 UniRef50_A6V205 Probable transcriptional regulator n=7 Tax=Bacte... 241 9e-62 UniRef50_Q143R5 MalT n=1 Tax=Burkholderia xenovorans LB400 RepID... 241 1e-61 UniRef50_A5V421 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 240 2e-61 UniRef50_A5V4I4 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 240 2e-61 UniRef50_UPI00006A2BBB UPI00006A2BBB related cluster n=1 Tax=Xen... 240 2e-61 UniRef50_A5UYI0 Transcriptional activator domain n=2 Tax=Roseifl... 240 2e-61 UniRef50_B5HRX4 Transcriptional regulator n=1 Tax=Streptomyces s... 240 3e-61 UniRef50_A8LZ74 ATP-dependent transcriptional regulator, MalT-li... 232 4e-59 UniRef50_A5V680 Regulatory protein, LuxR n=1 Tax=Sphingomonas wi... 232 7e-59 UniRef50_B8DMH8 ATP-dependent transcriptional regulator, MalT-li... 230 2e-58 UniRef50_Q1LD93 ATP-dependent transcriptional regulator, MalT-li... 226 3e-57 UniRef50_D2S7N2 ATP-dependent transcriptional regulator, MalT-li... 226 4e-57 UniRef50_B2UD70 Transcriptional activator domain n=1 Tax=Ralston... 219 4e-55 UniRef50_UPI0001C310C7 ATP-dependent transcriptional regulator, ... 219 4e-55 UniRef50_C5C0G8 ATP-dependent transcriptional regulator, MalT-li... 219 5e-55 UniRef50_UPI0001C32137 ATP-dependent transcriptional regulator, ... 216 3e-54 UniRef50_C5BYP8 ATP-dependent transcriptional regulator, MalT-li... 214 1e-53 UniRef50_Q5Z0N1 Putative transcriptional regulator n=1 Tax=Nocar... 213 3e-53 UniRef50_B8GBN1 Transcriptional activator domain protein n=3 Tax... 205 6e-51 UniRef50_Q0SA69 Probable ATP-dependent transcriptional regulator... 205 8e-51 UniRef50_C8XGA7 Transcriptional regulator, LuxR family n=1 Tax=N... 204 2e-50 UniRef50_C7QI16 Transcriptional regulator, LuxR family n=1 Tax=C... 202 5e-50 UniRef50_D2ASM3 ATPase-like protein n=1 Tax=Streptosporangium ro... 202 5e-50 UniRef50_C3JUK9 LuxR-family transcriptional regulator n=2 Tax=Rh... 202 7e-50 UniRef50_A1T5L2 Regulatory protein, LuxR n=2 Tax=Mycobacterium R... 201 8e-50 UniRef50_D2PS65 Transcriptional activator domain protein n=1 Tax... 200 2e-49 UniRef50_D1C1B5 Transcriptional regulator, LuxR family n=1 Tax=S... 200 3e-49 UniRef50_UPI0001B4E414 LAL subfamily transcriptional regulator n... 197 2e-48 UniRef50_C4DRX9 Transcriptional regulator, luxR family n=1 Tax=S... 197 2e-48 UniRef50_C1B102 Putative LuxR family transcriptional regulator n... 197 2e-48 UniRef50_UPI0001AF081C putative LuxR family transcriptional regu... 196 4e-48 UniRef50_A1UB03 Regulatory protein, LuxR n=4 Tax=Mycobacterium R... 194 1e-47 UniRef50_A4X8K3 Regulatory protein, LuxR n=1 Tax=Salinispora tro... 192 5e-47 UniRef50_A9AYH6 Transcriptional activator domain n=1 Tax=Herpeto... 192 7e-47 UniRef50_A4TDA0 Regulatory protein, LuxR n=2 Tax=Mycobacterium R... 191 1e-46 UniRef50_C4DK73 Transcriptional regulator, luxR family n=1 Tax=S... 190 2e-46 UniRef50_D1A6G3 Transcriptional regulator, LuxR family n=1 Tax=T... 190 2e-46 UniRef50_UPI0001C311F3 transcriptional regulator, LuxR family n=... 190 2e-46 UniRef50_C8SW08 Transcriptional regulator, LuxR family n=1 Tax=M... 190 2e-46 UniRef50_A4FEF8 Large transcriptional regulator n=1 Tax=Saccharo... 190 2e-46 UniRef50_C5HV09 LuxR family transcriptional regulator n=1 Tax=St... 190 3e-46 UniRef50_A5UVS9 Transcriptional activator domain n=2 Tax=Roseifl... 189 4e-46 UniRef50_Q67R77 Putative transcriptional regulator n=1 Tax=Symbi... 189 5e-46 UniRef50_D1A6A5 Transcriptional regulator, LuxR family n=1 Tax=T... 188 6e-46 UniRef50_D1C6P4 Transcriptional regulator, LuxR family n=1 Tax=S... 188 7e-46 UniRef50_C7QAM9 Transcriptional regulator, LuxR family n=1 Tax=C... 188 8e-46 UniRef50_C4DE14 Transcriptional regulator, luxR family n=1 Tax=S... 188 1e-45 UniRef50_C8XK28 Transcriptional regulator, LuxR family n=1 Tax=N... 187 1e-45 UniRef50_D1S741 Transcriptional regulator, LuxR family n=4 Tax=A... 187 2e-45 UniRef50_D1X635 Transcriptional regulator, LuxR family n=3 Tax=S... 187 2e-45 UniRef50_UPI0001C32132 transcriptional regulator, LuxR family n=... 185 6e-45 UniRef50_Q9RD32 Putative transcriptional regulatory protein n=2 ... 185 8e-45 UniRef50_C7QAM0 Transcriptional regulator, LuxR family n=1 Tax=C... 185 1e-44 UniRef50_C8XHS3 Transcriptional regulator, LuxR family n=1 Tax=N... 184 1e-44 UniRef50_Q128D5 Transcriptional regulator, LuxR family n=1 Tax=P... 184 1e-44 UniRef50_D2B5P2 ATPase-like protein n=1 Tax=Streptosporangium ro... 184 1e-44 UniRef50_D2PVL9 Transcriptional regulator, LuxR family n=1 Tax=K... 183 2e-44 UniRef50_A1R4G6 Putative transcriptional regulator, LuxR family ... 183 3e-44 UniRef50_D2B675 Transcriptional regulator, LuxR family n=1 Tax=S... 183 4e-44 UniRef50_C7QAL5 Transcriptional regulator, LuxR family n=1 Tax=C... 183 4e-44 UniRef50_Q0H2W0 Putative regulatory protein n=1 Tax=Actinomadura... 182 4e-44 UniRef50_A8L327 Transcriptional regulator domain protein n=1 Tax... 182 6e-44 UniRef50_A3PTZ1 Regulatory protein, LuxR n=3 Tax=Mycobacterium R... 182 8e-44 UniRef50_Q47P06 Regulatory protein, LuxR n=1 Tax=Thermobifida fu... 181 9e-44 UniRef50_A4FKV5 Putative uncharacterized protein n=1 Tax=Sacchar... 181 1e-43 UniRef50_UPI0001C30F9F transcriptional regulator, LuxR family n=... 181 1e-43 UniRef50_C5BYR9 ATP-dependent transcriptional regulator, MalT-li... 181 1e-43 UniRef50_UPI0001C311C9 transcriptional regulator, LuxR family n=... 181 1e-43 UniRef50_Q1MX84 Putative transcriptional regulator, LuxR family ... 181 1e-43 UniRef50_A3PV03 ATP-dependent transcriptional regulator-like pro... 180 2e-43 UniRef50_D2SDB3 Transcriptional regulator, LuxR family n=1 Tax=G... 180 2e-43 UniRef50_A1SPZ4 Regulatory protein, LuxR n=1 Tax=Nocardioides sp... 179 4e-43 UniRef50_A8M268 ATP-dependent transcriptional regulator, MalT-li... 179 4e-43 UniRef50_A4TDC4 Regulatory protein, LuxR n=1 Tax=Mycobacterium g... 179 5e-43 UniRef50_A1YAL2 Transcriptional regulator n=1 Tax=Amycolatopsis ... 179 5e-43 UniRef50_D2SB90 Transcriptional regulator, LuxR family n=1 Tax=G... 178 6e-43 UniRef50_B2HJ87 Transcriptional regulatory protein n=1 Tax=Mycob... 178 7e-43 UniRef50_Q0ILD5 NlmRI n=1 Tax=Streptomyces nanchangensis RepID=Q... 178 7e-43 UniRef50_A4FHX0 Transcriptional regulator, LuxR family n=8 Tax=A... 178 9e-43 UniRef50_C9YYH7 Putative regulator n=1 Tax=Streptomyces scabiei ... 177 2e-42 UniRef50_UPI0001C3103E transcriptional regulator, LuxR family n=... 177 2e-42 UniRef50_C5C1K1 Transcriptional regulator, LuxR family n=1 Tax=B... 177 2e-42 UniRef50_D0LA93 Regulatory protein LuxR n=3 Tax=Corynebacterinea... 176 3e-42 UniRef50_B8HJC4 Transcriptional activator domain protein n=6 Tax... 176 4e-42 UniRef50_Q3S885 Putative LuxR class regulator n=1 Tax=Streptomyc... 176 4e-42 UniRef50_A1TGW8 Regulatory protein, LuxR n=1 Tax=Mycobacterium v... 176 4e-42 UniRef50_C7QKM8 Transcriptional regulator, LuxR family n=2 Tax=c... 175 6e-42 UniRef50_Q5QES7 AmphRI n=2 Tax=Streptomyces nodosus RepID=Q5QES7... 175 7e-42 UniRef50_D2BFB3 Response regulator receiver protein n=1 Tax=Stre... 175 9e-42 UniRef50_A4F5P5 Transcriptional regulator, LuxR family n=1 Tax=S... 175 9e-42 UniRef50_C9N5T8 Transcriptional regulator, LuxR family n=2 Tax=S... 175 1e-41 UniRef50_UPI0001C30FA4 transcriptional regulator, LuxR family n=... 175 1e-41 UniRef50_A0JU98 Transcriptional regulator, LuxR family n=2 Tax=A... 175 1e-41 UniRef50_Q98DV9 Transcriptional regulatory n=1 Tax=Mesorhizobium... 174 1e-41 UniRef50_UPI0001C32364 transcriptional activator domain protein ... 173 2e-41 UniRef50_UPI0001C31A5A ATP-dependent transcriptional regulator, ... 173 2e-41 UniRef50_C7MVE7 Response regulator containing a CheY-like receiv... 173 3e-41 UniRef50_A0QU90 Tetratricopeptide repeat family protein n=1 Tax=... 173 3e-41 UniRef50_C6WIE2 Transcriptional regulator, LuxR family n=1 Tax=A... 173 4e-41 UniRef50_B6A1Y1 Transcriptional regulator, LuxR family n=2 Tax=R... 172 5e-41 UniRef50_Q8CJK8 Putative transcriptional regulator n=2 Tax=Strep... 172 6e-41 UniRef50_C7QI55 Transcriptional regulator, LuxR family n=2 Tax=C... 171 8e-41 UniRef50_D1XAP8 Transcriptional regulator, LuxR family n=2 Tax=S... 171 8e-41 Sequences not found previously or not previously below threshold: >UniRef50_A7N5N6 HTH-type transcriptional regulator malT n=66 Tax=Gammaproteobacteria RepID=MALT_VIBHB Length = 902 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 420/902 (46%), Positives = 610/902 (67%), Gaps = 3/902 (0%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 M IPSKL+RP RL + +VR R+L L A ++L L SPAGYGKTT+ +QW + K ++G Sbjct: 1 MWIPSKLTRPGRLHNAIVRPRVLDLLQQAPYYKLVLFRSPAGYGKTTMAAQWLSDKPNVG 60 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 WYS+D+ DN RF +YL+ A+ +ATN +C+ + +A+KRQ++SL SLF+++F E+A++ Sbjct: 61 WYSIDDSDNDGFRFVNYLLQALNKATNYNCSNAQKLAEKRQFSSLRSLFSEVFAEMADFQ 120 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 Y+V+DDYHLITN IHESMRFF++H P+NLT+VV SR P LG ANLRVRD ++EIG Sbjct: 121 HECYVVLDDYHLITNDEIHESMRFFLKHMPDNLTVVVTSRAAPPLGTANLRVRDLMIEIG 180 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++ LAF +E +FF+ R++ I+ ++ + V GW +ALQLIAL A+ + ++ Sbjct: 181 NEMLAFDTEETTRFFNQRIADGIDEDMANNLRTYVEGWPSALQLIALQAQHQNRTLAQTV 240 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 ++ N +HL DYLV+EV D +D TRHFL++ ++L ND L+ +T E+ +E Sbjct: 241 ESVSQFNHAHLWDYLVEEVFDLLDQETRHFLMQVSVLDHFNDELVFALTQREDALGMIES 300 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 + R GLF+ ++ WF +H LFG FL + + ++HR AA +W+ Q P +A Sbjct: 301 LNRFGLFIYPLEGEQNWFRFHNLFGEFLSHERLARIPQQEKDLHRNAAVAWLKQKAPHQA 360 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 IHHA + D ++ +IL W +FN EL+ LE ++ L D L +P+L +L+AWL Q Sbjct: 361 IHHAQKSNDTDLIVEILNEFGWKMFNQGELTTLESAINQLDKDLLFSHPKLSMLRAWLAQ 420 Query: 421 SQHRYGEVNTLLARAEHE---IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 SQHRY +V LLA AE E + + NAL AQVAIN P+ A LA+LAL Sbjct: 421 SQHRYNQVGKLLAEAEEEHKKRNIEIDSGYQGQANALLAQVAINSNQPEHALELAELALS 480 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 +L P + SRIVATSV+GEV H G+L R+L +MQQTE++ARQ+ V+H ALW+++QQSEI Sbjct: 481 QLDPTVYRSRIVATSVVGEVNHVLGKLDRALPMMQQTEKLARQYQVYHQALWAILQQSEI 540 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 + AQG++Q A+E Q+ F+LI EQ L+ +P+HEFL+RIRAQ+LW W RLDEAE A G+ Sbjct: 541 MIAQGYVQAAFELQDSGFRLIEEQQLQHVPLHEFLLRIRAQVLWCWNRLDEAEECAYKGL 600 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 ++L ++ P + L +ML + ++ RG+LD A + +++L+ YH DW +NA+ + Sbjct: 601 QILENHSPSKHLHSYSMLARIAIGRGELDKAGKFIEHIQHLMKQSTYHVDWTANASLSLI 660 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 ++WQ G+ A WL +PE A NHF Q QWRNIARA I LG+++ A L+ L Sbjct: 661 LFWQARGNTEAIQEWLNTAVRPESACNHFQQLQWRNIARAHINLGQYDEAREALDFLQSE 720 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 A L++D NRNL++ L + + A+ +L +AL + N+TG + +F+ +G + Sbjct: 721 AHRTNLVTDTNRNLVVEAILAARQKDEEQAKTLLKEALVMTNQTGMVGNFLTDGATIGGL 780 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLT 837 L +L + L +LE+HRAQ+++++I+ + R + HFDE+F+E+L+NHP VPEL+RTSPLT Sbjct: 781 LEKLSLRHELGDLERHRAQQLMKDISSNQRSRSIHFDEDFIEKLVNHPNVPELVRTSPLT 840 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMM 897 QREWQVLGLIYSG+SNEQIA EL+VA TTIKTHIRNLYQKL +A+R++A+ A+ LL++M Sbjct: 841 QREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTAENLLQLM 900 Query: 898 GY 899 GY Sbjct: 901 GY 902 >UniRef50_A8GKU0 HTH-type transcriptional regulator malT n=171 Tax=Bacteria RepID=MALT_SERP5 Length = 904 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 685/903 (75%), Positives = 796/903 (88%), Gaps = 3/903 (0%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 MLIPSKLSRPVRL +TV+R+RLLAKL+ N+RL L+ PAGYGKTTL++QWAAGK+D+G Sbjct: 1 MLIPSKLSRPVRLQNTVIRDRLLAKLASTANYRLTLVNCPAGYGKTTLVAQWAAGKSDLG 60 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 WYSLDE DNQ ERFASYLIAA+Q A+ GHC E ++QK QYASL++LFAQLFIEL++WH Sbjct: 61 WYSLDESDNQPERFASYLIAALQLASGGHCVKSEALSQKHQYASLSALFAQLFIELSDWH 120 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 PLYLVIDDYHLITN VIHE+MRFF+RHQPENLTL++LSR LP LGIANLRVRDQLLE+G Sbjct: 121 QPLYLVIDDYHLITNDVIHEAMRFFLRHQPENLTLILLSRTLPPLGIANLRVRDQLLEMG 180 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 +QQLAFTHQEAKQFFDCRL SP+E+ +SSR+CD+V GWATALQLIALSARQ+ SA +SA Sbjct: 181 TQQLAFTHQEAKQFFDCRLVSPMESQDSSRLCDEVEGWATALQLIALSARQSNSSAQQSA 240 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 +RLAG+NASHLSDYLVDEVLD+VD R FLL+ ++LRSMNDALI R+TGE+NGQ RLEE Sbjct: 241 KRLAGLNASHLSDYLVDEVLDHVDAEARAFLLRCSVLRSMNDALIVRLTGEDNGQQRLEE 300 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +ERQGLF+ RMDD+GEWFC+HPLF FLRQRCQWELA ELP +HRAAAE W+A G+P+EA Sbjct: 301 LERQGLFIHRMDDSGEWFCFHPLFATFLRQRCQWELALELPGLHRAAAEGWLALGYPAEA 360 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 IHHALAA D MLRDILL HAWSLF+HSEL+LLEE L ALP++ L++NP+L LLQAWL Q Sbjct: 361 IHHALAASDVSMLRDILLQHAWSLFHHSELALLEECLNALPYERLIQNPKLALLQAWLAQ 420 Query: 421 SQHRYGEVNTLLARAEHEIKDIR---EDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 SQHRY EVNTLL RAE ++D + + T+ AEF+ALRAQVAIN G P+EAERLA AL+ Sbjct: 421 SQHRYSEVNTLLERAEQAMRDQKIEVDRTLEAEFDALRAQVAINAGKPEEAERLATEALK 480 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 LP +YSRIVATSV GEV HCKGEL R+L +MQQTEQMAR+H +HYALW+L+QQSEI Sbjct: 481 FLPLSSYYSRIVATSVTGEVHHCKGELARALPMMQQTEQMARRHQAYHYALWALLQQSEI 540 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 L AQGFLQ A+ETQ+KAF+L+ EQHLEQLPMHEFL+RIR+Q+LW+W+RLDEAE +AR G+ Sbjct: 541 LIAQGFLQAAFETQDKAFELVREQHLEQLPMHEFLLRIRSQILWSWSRLDEAEDAAREGL 600 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 ++L++YQPQQQLQC+AML +CSLARGDLDNA + + R E LL +YH DW++NA+K RV Sbjct: 601 KILANYQPQQQLQCIAMLAKCSLARGDLDNANAHMQRCEVLLHGTQYHRDWLTNADKPRV 660 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 I+WQMTGD AAA WLR T KP A+NHF+QGQWRNIAR QI+LG++E AE+VL+ELNEN Sbjct: 661 IHWQMTGDTTAAAQWLRQTEKPGMADNHFMQGQWRNIARVQIMLGQYEEAEVVLDELNEN 720 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 AR LRL+SDLNRNLLL NQLYWQ RKSDAQ+VL++AL LA+RTGFISHFVIEGEAMAQQ Sbjct: 721 ARRLRLVSDLNRNLLLSNQLYWQMERKSDAQKVLMEALSLASRTGFISHFVIEGEAMAQQ 780 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLT 837 LRQLIQLNTLPELE HRAQRILR+INQHHRHKFAHFDENFV++LL HP+VPELIRTSPLT Sbjct: 781 LRQLIQLNTLPELENHRAQRILRDINQHHRHKFAHFDENFVDKLLTHPQVPELIRTSPLT 840 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMM 897 QREWQVLGLIYSGYSN+QIAGEL VAATTIKTHIRNLYQKLGVAHRQ+AVQ AQQLLKMM Sbjct: 841 QREWQVLGLIYSGYSNDQIAGELAVAATTIKTHIRNLYQKLGVAHRQEAVQQAQQLLKMM 900 Query: 898 GYG 900 GYG Sbjct: 901 GYG 903 >UniRef50_Q2SPN4 Maltose regulon positive regulatory protein MalT n=3 Tax=Gammaproteobacteria RepID=Q2SPN4_HAHCH Length = 918 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 342/903 (37%), Positives = 517/903 (57%), Gaps = 12/903 (1%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIG 60 LI +K+ P R H + RE+ L + L L+ +PAGYGKTT+I A + Sbjct: 12 LIKAKILPPPRPAHLLEREKFDDLLHEIDPVNLILVQAPAGYGKTTMIDDRLGALGANAA 71 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W+ LD DN E+FA Y+ ++ +AT G C ++ Y +L + L EL Sbjct: 72 WFRLDAQDNLSEQFAFYVAHSLNEATRGACPETLRTLNQQGYPTLQTFLTDLLSELPLEG 131 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 PL+LV+DDYHLI+NP IH + F +RH P +TLV+LSR P +G+A LR++ ++LEI Sbjct: 132 DPLHLVLDDYHLISNPEIHSGVMFLLRHLPPYITLVLLSRTTPPIGVAQLRMQGRMLEIT 191 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++ L+F+ EA+ +F+ RL + R V GW +ALQL+A +A Sbjct: 192 AKDLSFSADEAQVYFEQRLRFEVSRESVERANRRVEGWVSALQLLAATASTGVEFNEYVE 251 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + +G + ++ DY + ++D R FLL++++L N ++ R+ +++GQ L Sbjct: 252 QLHSGNH--YIFDYFDELTRTSIDNEQRLFLLRTSVLERFNALMVMRLAQQQDGQFLLNS 309 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 + GLF+ +D +G WF YHPLF +LR L E ++H+ A+++W GF +A Sbjct: 310 LLNLGLFIVPLDSSGLWFRYHPLFAAYLRHMQVCVLPDETAQLHQRASDAWREMGFFEDA 369 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 HA+ A D ++DILL+ F + +LL+ AL + + ++P L LL+AW+ Q Sbjct: 370 ARHAVLAKDQQRIKDILLSCGRDFFTEGQFNLLQRCFDALNKEVIADHPILTLLRAWVAQ 429 Query: 421 SQHRYGEVNTLLARAEHEI----KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 Q+++ EV + L AE + + + ++ EFNA+RAQVA+N G+ + A+ AK AL Sbjct: 430 GQYQWSEVESWLRAAEQHLKTHCSEEEWEAINGEFNAVRAQVAMNVGDAERAQTFAKSAL 489 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 P SR A+SV+GE L +G L ++ MQ TEQ+A +W+L QQSE Sbjct: 490 AHDPVYLPTSRTAASSVIGESLFVQGHLKEAITRMQDTEQLALAEHAHQNVIWALCQQSE 549 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 I AQG+LQ A+ QEKA Q + LE+LP+ EFL RIR+Q++W W L+ AE A G Sbjct: 550 ISVAQGYLQKAYNIQEKALQYAEDHSLERLPILEFLYRIRSQIMWEWHHLESAERCALKG 609 Query: 597 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 IE+L S + +Q ML + + ARG + ++ +L +G+YH DW +NA+ Sbjct: 610 IEILESQGERWFIQSYVMLAKIAQARGRQSLCADYVQKIHKMLASGEYHIDWTANAHAAM 669 Query: 657 VIYWQMTGDKAAAANWLRHTAK--PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 714 + YW DK + WL + PE A NHF Q RN ARA + LG+F+ A +LE + Sbjct: 670 LSYWDAVRDKESIQRWLTAAPEPTPEQATNHFTQCNIRNWARAYVSLGDFDKALPLLEGI 729 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 A L +D+NRN + L+QLYW ++ DA R + ALKLA+ TG + F+ G+ + Sbjct: 730 QSMAEQFGLKTDINRNHIHLSQLYWLNEQREDALRHMAIALKLASTTGAVGSFLRIGKVL 789 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHH---RHKFAHFDENFVERLLNHPEVPELI 831 L+ LI L E+E+ RA+R+++ Q R DE ++ +++ P+VPELI Sbjct: 790 INILKALISEEQLDEMEKQRAERLIQLAQQQRDFSRAIRISLDEAIIQDIIDRPDVPELI 849 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 RTSPLT+REWQVL LI++G SN+QIA ++VA TT+KTHIR+LYQK + HR +A+ A+ Sbjct: 850 RTSPLTRREWQVLSLIHAGLSNDQIAEHMKVAPTTVKTHIRSLYQKQNITHRSEAINLAR 909 Query: 892 QLL 894 LL Sbjct: 910 DLL 912 >UniRef50_B8CZU7 Regulatory protein LuxR n=3 Tax=Firmicutes RepID=B8CZU7_HALOH Length = 887 Score = 530 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 223/906 (24%), Positives = 400/906 (44%), Gaps = 46/906 (5%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGAN--NFRLALITSPAGYGKTTLISQWA-AGKNDI 59 + +KL + RERLL KL+ +L L+++PAGYGK+TLI+ W K Sbjct: 15 LKTKLHPAPLPSGIIHRERLLNKLAEGRKNGTKLILVSAPAGYGKSTLITDWLVRDKIKH 74 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W S+++ DN+ F YL++++Q+ + G ++ Q + L + L EL Sbjct: 75 AWLSIEDEDNKLVPFFEYLLSSLQEISEGFGKTIRSILASPQLPPINVLISLLIQELEAL 134 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 +PL +V+DDYH I+N I++ + + + H P + LV++SR P + + LR +QL EI Sbjct: 135 PAPLTIVLDDYHFISNRQINQGISYLLEHLPLDFKLVIISRQDPPIPLGRLRANNQLTEI 194 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L F QEA FF+ L + E S + GW + LQL LS +++ K Sbjct: 195 RMKDLKFNKQEASSFFEENLQIALNEEEVSLLNSRTEGWVSGLQLAGLSLKESAEGERKV 254 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 + + DYL +EVL + FL K+++L ND++ R+T + N + + Sbjct: 255 FIDNFSGSNRFVIDYLFEEVLVRQKPEVKDFLCKTSVLNKFNDSICNRLTEDSNSKSVIT 314 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 E+++ F+ +D W+ YH LF +FL E +H+ AA + +G+ E Sbjct: 315 ELDKGNHFIIPLDVNKSWYRYHHLFRDFLTSELSL---EEKKGLHKKAASWYDERGYLHE 371 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 AI+H+ A D +L ++ LFN E+ L E L+ LP L +N +L++ + W + Sbjct: 372 AIYHSREADDLDLLERLITKLTIDLFNKGEVETLLEYLEYLPEKRLKKNSKLLIFKTWCL 431 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL 479 + E+ L + + D+ + F AL + ++ +A+ A++ + Sbjct: 432 FLTGKGREIAGYLQLIKDREDINKNDSYYGLFLALIVLF----DHQEKNLEMAEKAVDMI 487 Query: 480 PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 539 + RI A LG+V G+ + ++ ++ + ++ D + +LI + L Sbjct: 488 DNKEHFFRIAALLSLGQVQASMGKYSEAVITFKEAMNIGKKTDFHFGTITALINLAVNLN 547 Query: 540 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 599 G + A E + + + P+ + L + +L A + + GI Sbjct: 548 WLGQRKEAVLICENSLYEYTDSRGKIYPLANLIYIPLGILKYENNQLKSAYSYLQKGITF 607 Query: 600 LSSYQPQQQLQCL-AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 658 + + + + Q A G + A + + NL G I N + Sbjct: 608 CQEWSFVRIMGLGEWYMGQTLFALGKKEEAIEFVEEIINL-GKQLGLKGLIFFMNCLEAD 666 Query: 659 YWQMTGDKAAAANWLRHT----AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 714 + +K A W + + F+ + R + + E + +L + Sbjct: 667 LYVKADNKEKAFLWAEEIKKFPDQMITISGIFMGFTY---TRVLLSQRKIEEVDSILSRI 723 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 N R L LL ++ + G+K+ A + L++A+KLA G+ F+ EGE + Sbjct: 724 NNLGVKGRN---LITVRLLQTKISYLEGKKNKALKCLVEAVKLARPEGYTRAFLDEGEVI 780 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 + L ++ ++ + I + K + F+ + Sbjct: 781 YKLLSEVKDVS----------PAFITGILEAFDFKKSTFNNQNL--------------IE 816 Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLL 894 PL++RE ++LGLI +G SN++IA +L + T K HI N+Y KLGV R A++ A QL Sbjct: 817 PLSERELEILGLIVNGLSNKEIAKKLYITVGTTKWHISNIYGKLGVNKRAQAIKKALQLE 876 Query: 895 KMMGYG 900 + G Sbjct: 877 LIAAPG 882 >UniRef50_C0Z6I1 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6I1_BREBN Length = 856 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 208/896 (23%), Positives = 351/896 (39%), Gaps = 58/896 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIG 60 LI +KL P ++R ++ ++ A R+ L+ +PAG+GKTT +SQW G Sbjct: 9 LIATKLHVPKYGSDLLLRHQIWKEIDDAGAARVILVCAPAGFGKTTAVSQWTQNSGKPTG 68 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLDE DN RF Y A+ A G ++ + AS L + L E+A + Sbjct: 69 WISLDESDNDPVRFWRYFARAIDMAQEGVGKESSSVLHPQYTASAEQLMSVLLEEIAGFE 128 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 YLV+DDYHLI P IHE ++ I+H + +V+++R P + LRVR QL ++G Sbjct: 129 RDFYLVLDDYHLIKEPSIHEGLQTLIQHASFYMHVVLITREEPPFALHRLRVRKQLKQLG 188 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 S L F +E ++ F +L + + GW LQL ALS + ++ Sbjct: 189 SDTLRFNEEECRRLFCEQLGMSLSEQAIGLLSKRTEGWVAGLQLAALSMQGKPEASKVI- 247 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 N ++ +YL +EVL + + FLLK++IL + L VTGE + L Sbjct: 248 -HHFSGNDKYVGEYLTEEVLKRLPEKVQMFLLKTSILPRLTGDLCAAVTGEPDAHDILRM 306 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +ER F+ +D EW+ YH LF L + LP +H +A+ + + G+ EA Sbjct: 307 LERTNSFVIALDGVNEWYRYHHLFAELLLSHVRKTYNELLPALHISASCWFESHGWIMEA 366 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 HA D +++ HA + E L ++ L NP+L + AWL Sbjct: 367 TEHAFLGKDWNRASRLIVAHAPWMLKQYENITLRRWMRYFDSSWLESNPELCIAFAWLHA 426 Query: 421 SQHRYGEVNTLLARAEHEIK--DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 + + LL A+ + D E LR + + GN D + + + ++ Sbjct: 427 VSNEIDQAEILLQLADEATRINHGSYDDCRVEMCVLRGYIEVMRGNVDLSLKYMEESVHM 486 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 P Y + E + + Sbjct: 487 KPKFSRYFIVGIELNSDEPYVLRSRVA--------------------------------- 513 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 G+L E K + L + + + +L + ++ + I+ Sbjct: 514 -LSGYLSNVNEYYPKLRAIWKHSGLG---ILAYGSIVLGELYYEQNDFEQLKYFVPRAIQ 569 Query: 599 VLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 + + S + L + A D + + +L W+S RV Sbjct: 570 LGTISLNFGVLVPVYLTLARWRKAEHRNDEMWLAMEEITSLCRQHDAPPHWMSFVETFRV 629 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFL-QGQWRNIARAQILLGEFEPAEIVLEELNE 716 W + W+ AK + + +AR + L A ++L L Sbjct: 630 RLWIEENRREEIEKWVEPYAKMNVDIVASRHEFERMTLARVYLYLKNDSAAIMLLTSLKH 689 Query: 717 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 776 A + LLL+Q Y ++ +A + A+ LA G++ F+ EG +A+ Sbjct: 690 EAEIKDRLGSRIEAFLLLSQAYMIQKQQHEAMECMRMAVTLAAPEGYVRTFLDEGSGVAK 749 Query: 777 QLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPL 836 L L + + + E +L+ + + ++ L Sbjct: 750 MLYSLYKSKNVSKQEMAYLSMLLKSVEKEFPTL--------------DIQIRVSPALEKL 795 Query: 837 TQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 T+RE +VL LI G SN IA +L + T+K H+ ++ KL V +R A+ ++ Sbjct: 796 TERESEVLALIGEGLSNSDIADKLHLTLGTVKGHVHQIFSKLQVKNRAQAIVRLRE 851 >UniRef50_C4X459 Trans-acting regulatory protein of aco operon n=4 Tax=Klebsiella RepID=C4X459_KLEPN Length = 921 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 216/913 (23%), Positives = 373/913 (40%), Gaps = 35/913 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 LI +K P + R RLL LS RL ++ + AG+GKTTL++QW A Sbjct: 27 LILTKFVPPRSSIQLLERPRLLQLLSPVQQCRLGVVCAGAGFGKTTLLAQWHQQMVAQGE 86 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 I W SLDE D+ +F YL+ A++ A ++++ +S L A L +L Sbjct: 87 RIAWLSLDEDDDDVWQFIPYLLQALRPLYADWDADFWRDMEEQKLSSSEQLLAGLINQLH 146 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 +YL+IDD+H+I + ++E++ + I+H P L L++ SR P L ++ L+ +DQL+ Sbjct: 147 YCPHDVYLIIDDFHVINDRGVYEALGYLIKHAPAALHLIIGSRFHPNLALSQLQAQDQLV 206 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI + L FT +E K +F ++ P+ + R+ GW +++ +LSA H Sbjct: 207 EIYDRDLQFTLEETKHYFSRTIALPLSNHHAQRLQSVTEGWIAGMKIASLSAELQNDPEH 266 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 R ++ YL + VLD + FL+K++ L +N L VTG ++ + Sbjct: 267 --LLRNMHGGTRSIARYLKEVVLDPLPEEVLDFLVKTSFLSRLNAELCNAVTGRDDSKAM 324 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L IER LFL +D+ G WF YHPL LR Q + +++ A++ ++ Q Sbjct: 325 LAWIERHNLFLSALDEQGYWFRYHPLLQENLRTMLQQNNDIDRKQLYELASQWFVEQKLW 384 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 SEA+ HAL+AG + A SL ++ L + LP + L + AW Sbjct: 385 SEAVRHALSAGKPVHSPVQDGASAQSLAEEGDIDTLISWMHHLPPSTDPSRIDLQINLAW 444 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEF---NALRAQVAINDGNPDEAERLAKL 474 + + E LL + + R+D + + +RA N E+ + + Sbjct: 445 ALAHYFHFDESRQLLDNLDQMVLHHRDDLTRSTWCKLRVVRAICEAFAENIPESLAIVQP 504 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 L E+P G + + ++L +L + Q D +++ Sbjct: 505 LLAEVPCGDTWVDGLICNILSYCHVVNQRYHDALEVQQHMPSPESPLDNLFVSVYRAFII 564 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 ++ QG L A EK + Q L + A++ + R D E Sbjct: 565 AQCHLCQGDLGKAGWYAEKTLRQAECYTGTQSTSGATLAPLLAEIAYECQRGDSPEHLLA 624 Query: 595 SGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 +E + + P L +C L + +L A L + L + + + Sbjct: 625 DRLEFIDRFSPPDALSRCYTYLARQALDNDMPYEAERLLEHAQRLAVSRGWQ-RLQAMLL 683 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPE----FANNHFLQGQWRNIA-----RAQILLGEF 704 +V G+ A R + H Q A R + G+ Sbjct: 684 AEQVRVRLQRGNFTGAEQLQRQLEQMAASFRMDAEHPCQRAIVMSASLSRSRLLLATGQA 743 Query: 705 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 764 A ++L E+ + S R L + W +G+ + A+ ++LA + Sbjct: 744 PQACVLLAEMVSDQESRGDRLTAARLRTLWSLALWNSGKTAAARTTFQPVVQLAEQQHLK 803 Query: 765 SHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 F+ G+ + L + + ++ + + +A N Sbjct: 804 GLFLEAGDTLQPLLAGMNESSSACTE------------KRGVQGSWADKRGPVDGTPFNS 851 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 L++RE Q+L LI G N++IA L ++A T+K HI+N+Y KL V R Sbjct: 852 GSPDIPG---ELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRT 908 Query: 885 DAVQHAQQLLKMM 897 A+ A ++ + Sbjct: 909 QAMSRALEMKLLD 921 >UniRef50_C0Z8V4 Probable transcriptional regulator n=2 Tax=Bacillales RepID=C0Z8V4_BREBN Length = 873 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 240/913 (26%), Positives = 386/913 (42%), Gaps = 62/913 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK-NDIG 60 ++ +KL P TV R RL+ +L+ N +L +I++PAG GKTTL+S+W A Sbjct: 5 IVTTKLYMPPPRLKTVTRHRLIEQLNEGLNRKLTVISAPAGSGKTTLVSEWLASGDRPFA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W S+DEGDN F +YL A+Q + + Q S+ + + L E+ Sbjct: 65 WISMDEGDNDPAHFFTYLFTALQNIGPNIGSGIYPLFHSPQPLSIELMISTLLHEIIAIS 124 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 +P LV DDYH++ + +++ F + P + LV+ +R P+L +A LRVR+QL E+ Sbjct: 125 NPFVLVFDDYHVLKTGPLDDAISFLLERMPRQMHLVIATREEPRLPLARLRVRNQLNEVR 184 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 L FT+ EA +F + + + + + GW LQL ALS ++ ++ Sbjct: 185 VSDLRFTYSEAAEFLEKVMEVELSPENIALLEARTEGWIAGLQLAALSIKEQID--VEAF 242 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN-----GQ 295 + + DYLV+EVL +T+ FLL ++IL ++ L V + + GQ Sbjct: 243 LPSFSGSHPFILDYLVEEVLTQQSASTQAFLLHTSILDRLSGPLCDAVFSQSDMCLGSGQ 302 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-------LAAELPEIHRAAA 348 LE +ER LF+ +D W+ YH LF + LRQR + L E+H A+ Sbjct: 303 ETLEFLERANLFIVPLDSERRWYRYHHLFADLLRQRLRQRVSSITGEGERILAELHTRAS 362 Query: 349 ESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLEN 408 + GF EA HHA+AA D ++ L + + L++LP + L Sbjct: 363 IWYEDNGFEMEAFHHAVAANDLSRAARLVEGERMPLLFRGGVVPVLNWLESLPREELDVR 422 Query: 409 PQLVLLQAWLMQSQHRYGEVNTLLARAEHEI----KDIREDTMHAEFNALRAQVAINDGN 464 P L ++ A + + V L AE + +D A+RA +A++ Sbjct: 423 PALWVMYASALLMTGQITGVEPKLLAAEKAMQGMGQDAGARDTLGHIAAIRATLAVSMHQ 482 Query: 465 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 524 +E AK AL L P R T LG H +G T + Q+ ++++ Sbjct: 483 AEEIMAEAKRALAYLHPDNLPVRTATTWSLGYAYHLQGNRTAATKAYQEALSISKKIGHV 542 Query: 525 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 584 + + + +++ A L A ET + +L LP A++ + W Sbjct: 543 VITMMATLGLAKLQEADNQLHMAAETYQHVQKLA---GSPPLPAACEAHLGLARIFYEWN 599 Query: 585 RLDEAEASARSGIEVLSSYQPQQQLQCL-AMLIQCSLARGDLDNARSQLNRLENLLGNGK 643 L AE + I++ + ++ L + LA+GD+ A + L E + Sbjct: 600 DLHTAELHGQQSIQLARQLEQTDRVVAAQVFLARLKLAQGDVSGAATMLANAEYVARKQG 659 Query: 644 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 703 + A +I Q AAA LRH AR + G+ Sbjct: 660 FVMQMPPIAEVQVLILLQQDNLTAAARLALRHDLP-------------ILQARVLLAQGD 706 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 A VLE L A + ++ + + +LL G ++ A +++ D L +A GF Sbjct: 707 TSAALAVLEPLLVQAEAKQIEDERLKIMLLQAVALQVQGDQAKAAQIMKDVLVIAEPGGF 766 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 I FV EG M + L LP + Sbjct: 767 IRTFVDEGSQMKRILHDATVHRMLPRYIEKLLAEF------------------------- 801 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 PL++RE ++L LI G SN IA +L +A +T+K H RN++ KL V R Sbjct: 802 -EPHHADSLIEPLSERELEILQLIEKGLSNRDIAQQLFLALSTVKGHNRNVFDKLQVQRR 860 Query: 884 QDAVQHAQQLLKM 896 +AV A+QL + Sbjct: 861 TEAVARARQLGLL 873 >UniRef50_A9WHL2 Regulatory protein LuxR n=3 Tax=Chloroflexaceae RepID=A9WHL2_CHLAA Length = 890 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 240/903 (26%), Positives = 385/903 (42%), Gaps = 38/903 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA--GKNDI 59 ++ +KL P D V R RL ++ A N RL +I +P G+GKTT+++ W A ++ Sbjct: 17 ILQTKLHPPSLADCFVPRPRLTERIHTALNNRLTIIAAPPGFGKTTVMAAWLATNTSENV 76 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 WYSL+E DN F + + AA+Q + E+ A L Sbjct: 77 AWYSLEEDDNDPICFFTCIAAALQTVAP--VSALESALGAAVANPRELTVALLNDLFVFS 134 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 + LV DDYH IT IH+++ + I H P N+ LV +SR P L + RVR QL EI Sbjct: 135 DRSVVLVFDDYHHITRQPIHDALVYLIDHLPNNIHLVFISRVDPPLPLGRWRVRGQLTEI 194 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L FT EA QF + + + A + + GW LQL ALS +++++ Sbjct: 195 RADDLRFTEAEAAQFLNQTMGLSLSAEAIRTLEERTEGWVAGLQLAALSLQKSSNPGQII 254 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A + +++DYL DEVL + R FLLK++IL N AL + + L Sbjct: 255 AAF--AGSNRYVADYLTDEVLARQPESLRDFLLKTSILERFNAALCNHLLQCVCSESILT 312 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 ++ER LF+ +D W+ YH LF + L++R A + ++HR AAE + F + Sbjct: 313 DLERANLFIIPLDSDANWYRYHHLFADLLKRRLAQANPAGITDLHRRAAEWFEQNNFTLD 372 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 AI H +AA + + ++ + H+EL+ L ++ALP L + P L W Sbjct: 373 AIRHWIAADEPERVAALMERTLSQSWGHAELAGLMHRIEALPDTVLAKYPILSAFLGWTW 432 Query: 420 QSQH-RYGEVNTLLARAEHEIKDIREDT-MHAEFNALRAQVAIN-DGNPDEAERLAKLAL 476 LL RAE +KD + + F +R+ +A + A LA+ AL Sbjct: 433 LWLGYDNARTLPLLERAERNLKDEPQASYARGRFQVIRSYIARAVHNDAPHAWLLAEQAL 492 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 ++L R A S + V H G L ++ + ++ R A + + Sbjct: 493 QQLAEHDLLWRGFAQSNIAIVTHSMGLGLAQTERAYNEAIRLCRAAGDPTTAWIAECARV 552 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA--EASA 593 +++ G LQ + + +I Q L + ++ +A + L A E + Sbjct: 553 QVVRECGDLQRSMTLNRRLIDMIERQGAPAL-VRGWVHINQALGYYLINDLKHAWLEVNM 611 Query: 594 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 ++ SS P L+ A+L + L G+ AR + L L G + I A Sbjct: 612 TQNLQTQSSGMPDVSLRLYALLTRLELLNGNEAAARQAADDLVTLAYRGGVTNA-IDWAY 670 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 VR D AA ++ R P+ + Q R + ++ E Sbjct: 671 AVRAELMFRLKDWAAFDSYARTYQPPQQPLFFPYRLQTLLQVRYLTRQKAWNEGRRLVAE 730 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 AR + ++ L +AG S A +L AL++ G++ F+ EGE Sbjct: 731 QVRLAREAGYVEYEMELHIVSALLEQKAGNPSVAMNMLGRALEIGKANGYVRIFLEEGEE 790 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 M L Q+ +L F + +V + Sbjct: 791 MRHLLTQIHRLRRDD------------------------FVAELLAAFGKPAQVVQSSLI 826 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 PLT+RE +VL LI G SN +IA +L ++ T+KTH++++Y KL V R A A++L Sbjct: 827 EPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKHIYGKLNVDDRVKAAGMAREL 886 Query: 894 LKM 896 + Sbjct: 887 GLL 889 >UniRef50_A4VQ60 ATP-dependent transcriptional regulator n=4 Tax=Gammaproteobacteria RepID=A4VQ60_PSEU5 Length = 932 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 326/902 (36%), Positives = 491/902 (54%), Gaps = 12/902 (1%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 LIP+KL+ P+ + R RL L RLA++ + +G+GKTTL +QWA + Sbjct: 28 LIPTKLAIPMLPPGLLERPRLDEWLQRLGQVRLAVLHAASGFGKTTLAAQWARAFDGRVA 87 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W L DN +F YL A+ + C + +A++ Q SL +LF QL EL H Sbjct: 88 WLQLHASDNLALQFGRYLTQALDPQLDAGCPLAVALAEQGQ-VSLDALFTQLLAELPGEH 146 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 + LV+D++ ++ + + +RFF+RH P +TL+V SR LP LG+A LRV+ QLL + Sbjct: 147 EAILLVLDEFEVLHDRELIAGLRFFLRHMPSWMTLLVCSRRLPGLGVAELRVKHQLLLLD 206 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++QLAF E + + + I + R+ + GW ALQL + T Sbjct: 207 ARQLAFEDDEVQALLELGVPVSINREQVERLNRRIGGWPCALQLALQEVQ--TSRGMDLF 264 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + + DY+ ++VL+ + R FL + +L + AL +T +G+ LE Sbjct: 265 LENLQLGHPDIRDYMREQVLEGLPDDLRGFLEATCLLERFDAALADHLTEACHGREMLER 324 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +ER GLF+Q +D W+ YHPLF FL+ + + ++H AA + +A+G P EA Sbjct: 325 LERGGLFIQPLDSLRRWYSYHPLFAVFLQGELRTHQPQRVNQLHLRAASALLAEGLPEEA 384 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 HA+ AG+ + +IL H + + L LL++ L+ LP + +P L LLQAW+ Q Sbjct: 385 ARHAVQAGEPQQVAEILQRHGRAFYRQGRLGLLQQCLETLPEAVIAGSPLLTLLQAWVSQ 444 Query: 421 SQHRYGEVNTLLARAEHEI----KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 + +++ +V +E + + + EFNA+RAQ+A+N G+ A LA+ AL Sbjct: 445 NSYQFDQVERWFKASELALHGSCSEQDWARIVGEFNAVRAQLAMNQGDEQRAIALAEEAL 504 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 P SR+ A S L E +G L ++ ++ E+ AR+ + H +WSL Q SE Sbjct: 505 TCEPLIMRTSRVAALSGLAEAHFVQGALPQAQKQYEEAERRAREINASHLVVWSLGQLSE 564 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 I AQG LQ A+ QE+A Q I +Q L+ +P+ EF+ R+R Q+L W +LD AE A G Sbjct: 565 IAIAQGHLQKAYTLQERAIQYIEQQRLQAMPIVEFIYRVRGQVLLEWHQLDAAEQCALQG 624 Query: 597 IEVLSSY-QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 I++L P+ +LQ A+L + ARG + +++ +L + +YH DW++NA+ V Sbjct: 625 IQILDELDDPRWRLQSYALLAGVAYARGQQHACADYIGQMQTMLADDRYHIDWLANAHAV 684 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 715 + YW + D+ A WL NHF Q RN ARA + LG+ + A +L +L Sbjct: 685 MLAYWDSSQDRDAIRQWLVSAPPVNGGANHFSQLNARNHARAYLALGQLDSALPILRQLL 744 Query: 716 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 775 NA L+ D NRN +LL QL+W + A L A+ LA+ +G I F+ G+ + Sbjct: 745 ANAECHGLVMDRNRNHILLAQLHWLREERQQALDHLQRAMTLASGSGAIGSFLRVGKPII 804 Query: 776 QQLRQLIQLNTLPELEQHRAQRILREINQHH---RHKFAHFDENFVERLLNHPEVPELIR 832 L+ L+ TL E E RA R+++ Q R DE ++ ++N P+VPELIR Sbjct: 805 GMLKCLLHERTLDEPEVQRATRLIQLAQQQRDFSRAIRITLDEAVIQDIINRPDVPELIR 864 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 SPLT+REWQVL LI++G SNEQIA L VA TTIKTHIR+LYQKL + HR +AVQ A+ Sbjct: 865 RSPLTRREWQVLSLIHAGQSNEQIADHLNVAPTTIKTHIRSLYQKLNITHRSEAVQLARD 924 Query: 893 LL 894 LL Sbjct: 925 LL 926 >UniRef50_A1U0Z9 Regulatory protein, LuxR n=2 Tax=Marinobacter RepID=A1U0Z9_MARAV Length = 916 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 235/914 (25%), Positives = 389/914 (42%), Gaps = 20/914 (2%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DI 59 ML+ +K RP V R+RL L + RL L+ +PAGYGKTTL+SQW AG + Sbjct: 1 MLLTTKFLRPTPDSRAVQRQRLDTLLQPESGKRLNLVIAPAGYGKTTLVSQWCAGNSMPT 60 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLDE D++ +F Y+I A + A C+ + ++ LT L LA Sbjct: 61 AWLSLDEQDDKPRQFWQYVIGAFEHAGLIGLEDCKKLLARQDDDELTPAITGLLNVLAAD 120 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 + LV+DDYH+I+N +H + +F+ + P + + + SR P L +A RVR Q+ +I Sbjct: 121 GNAWSLVVDDYHVISNDTLHRQLAWFLDYLPPGILVTLASRTEPPLPLARWRVRRQVQDI 180 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 LAF+ +E ++FF ++ + + IC GW A+QL AL+ A Sbjct: 181 HPGLLAFSEEECQEFFRSTMAMELSEDDIRSICRKTEGWVAAMQLSALA---GKKEAVLP 237 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 + L ++ +SDY++ EVL+ + + FLL++A + L V ++ Q +L Sbjct: 238 GQALGSPDSRLISDYVLTEVLEQLPEDLKDFLLETACCPRLCAPLCNAVRQRQDSQEKLS 297 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + Q LFL +D++ EWF YH LF L QR Q + E+ A + + G E Sbjct: 298 SLLSQNLFLIPLDNSNEWFRYHDLFREALLQRIQSAAPSHASELQSRAIDWLLRHGHVQE 357 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 I + D L +L H +L + + E L A+P + ++PQL +L+ W + Sbjct: 358 GIVQIVRRNDTDHLAAVLAEHGNNLIHGGYHLPVLEWLDAIPAHKIQDSPQLQMLRIWGL 417 Query: 420 QSQHRYG---------EVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER 470 +R E A+ +H+E + +R+ +A + A Sbjct: 418 FFANRVESLDPLLLEVEDLLDRRVADSHPDAEGALALHSEISLVRSYLARTRNDEKNASD 477 Query: 471 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 L + L+++ + V LG KGEL + ++ + L S Sbjct: 478 LTRQVLKDIDQISIPLKSVTYYGLGLDYFGKGELNDAEEALESAVHYGQVERKASTVLSS 537 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV---RIRAQLLWAWARLD 587 + I + +G A ET + Q ++E + + ++ ++ Sbjct: 538 GGLLAWIQYHRGDTDLALETTGRVRQWVDEHYADPSQPRLISCWQNSALTEIYRERNQIS 597 Query: 588 EAEASARSGIEVLSSY-QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 646 A+ ++ + +P Q + + + RGDL+ A L + H Sbjct: 598 TADGYLAPLLDHVRKGTEPGQHVVIQYVRGHLAFTRGDLETAVEALEDAVTTGRRRREHI 657 Query: 647 DWISNAN-KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 705 + A + + +G A L+ T N + +AR Q LGE++ Sbjct: 658 VFEPPAASALLARCYLSSGHAEKARACLQSTLDQPATNPLNREQNQIALARVQNALGEYQ 717 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A+ L L A L LL+ + GR ++ +L AL A GF+ Sbjct: 718 QAQDTLSALIPAAERNAHNRHLVEILLVYAEALAHEGRNDESDAMLEKALDRAENAGFLR 777 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILR-EINQHHRHKFAHFDENFVERLLNH 824 F E A+ + L +L T + + Q F E + Sbjct: 778 LFAEESTALREMLLDFPRLRTPGRWNRELLGMLRDLAAGQPGEASFNSSQEAYHPIDTAR 837 Query: 825 PEV-PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 P P PL+QRE +VL LI+ G +N++IA + VA T+K HIRNLY KLGV+ R Sbjct: 838 PGGEPVNALAEPLSQREQEVLALIHQGLANKEIAERMSVAPATVKAHIRNLYGKLGVSRR 897 Query: 884 QDAVQHAQQLLKMM 897 +A+ A+++ + Sbjct: 898 TEALAKAREVGLLE 911 >UniRef50_B0C3T1 Transcriptional regulator, LuxR family with TPR repeats n=4 Tax=Bacteria RepID=B0C3T1_ACAM1 Length = 924 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 239/929 (25%), Positives = 391/929 (42%), Gaps = 52/929 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND--I 59 L+ +KL RP V R RLL ++ +L L+++PAG+GKTTL+++W A D + Sbjct: 14 LLETKLYRPKWRPGLVSRPRLLERI--HKERKLTLVSAPAGFGKTTLLAEWVAAVPDQLV 71 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLD+GDN F +YLI A+Q+ +G ++ Q Q + S+ A L E+ Sbjct: 72 TWVSLDQGDNDSAFFWAYLITALQKINSGLGERSLSLLQSPQPPPIESVLAILINEINGV 131 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L L++DD+H+I N + E++ F + H P L L++ SR P L +A LR R +L E+ Sbjct: 132 EDNLTLILDDFHVIENRGVQEAITFLLDHLPFQLHLIIASRTDPPLPLARLRGRGELTEL 191 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L FT EA F + + I A+ + + GW LQL ALS + Sbjct: 192 RAADLRFTSNEAAAFLNRMMGLDISPADIAALETRTEGWVAGLQLAALSMQGREDIPEFI 251 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A + ++ DYL++EVL R FLL++A+L ++ L VT ++ Q L Sbjct: 252 AAF--SGDDRYIVDYLLEEVLQRQCDRVRTFLLQTAMLERLSGPLCDAVTNQQGSQTMLA 309 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 ++ER LF+ +D+ +W+ YH LF + L+ E L +HR A+E + Sbjct: 310 DLERDNLFVVPLDNKRQWYRYHHLFADVLQAHAIAEQLEHLSILHRRASEWYEQNNQLFH 369 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 AIHHALAA D ++ ++ + S + +K+LP P L ++ A ++ Sbjct: 370 AIHHALAAKDFERAASLIERIWPTMRQRQQESTVFGWMKSLPNSVFHNRPVLSVVYALVL 429 Query: 420 QSQHRYGEVNTLLARAEHEI--------------KDIREDTMHAEFNALRAQVAINDGNP 465 + + L AE + D++ ++ A RA A G+ Sbjct: 430 LNDGQLDTAEARLQNAERWLDKDTESPAVERVVVDDLQFRSLPASIANARAYRAQALGDV 489 Query: 466 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 525 A+ AL LP Y R S+LG G L + + + ++ Sbjct: 490 SSTITYAQQALALLPEDAAYERGTTASLLGLAYWASGNLEAAHLSFAKGLAIFQKIGGVQ 549 Query: 526 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 585 A+ + + I QG LQ A T E+A QL EQ L+ ++L + Sbjct: 550 IAIGGTLILAHIRRGQGRLQEAIRTCEQALQLATEQGEPGRRGTAELLMALSELHYEQGD 609 Query: 586 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL--ARGDLDNARSQLNRLENLLGNGK 643 L+ A G E+ L ++Q L + GDL+ A LN E Sbjct: 610 LETASQLLLQGEELREQATTLPGADHLWCVVQAHLKESLGDLEEAFKLLNEAERSYHRIP 669 Query: 644 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL-QGQWRNIARAQILLG 702 + ++V W G + A +W + +L + + + R I Sbjct: 670 IPD--VRPVAALKVRMWVRQGQLSEALSWANERQLSVEDDLSYLKEYEHITLTRVLIARY 727 Query: 703 EFE---------------PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 747 + +L L + A++ + L+ Y G A Sbjct: 728 RSDGQRSAQGHCRDNVIHQVLDLLARLLQVAQAAGRNGSVLDILVTQGLAYEVLGDVERA 787 Query: 748 QRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHR 807 L AL LA G++ F EG +MA+ LR++ P Sbjct: 788 ISPLKCALTLAEPEGYVRIFAQEGTSMAELLREIAARGITPGYTGRLL------------ 835 Query: 808 HKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTI 867 + + ++ ++ PL+QRE VL L+ + S +IA EL VA +T+ Sbjct: 836 TALETWGQKREDQAVSPISASAQSLVEPLSQRELDVLRLLRTDLSGPEIARELVVALSTV 895 Query: 868 KTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 +TH +++Y KL V +R+ A++ A L + Sbjct: 896 RTHTKSIYSKLNVNNRRAAIKRATALDLI 924 >UniRef50_C0ZJP0 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJP0_BREBN Length = 858 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 206/908 (22%), Positives = 358/908 (39%), Gaps = 59/908 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 ++ +K + P ++V R RLL K+ RL + +PAGYGKTTL+SQWA Sbjct: 1 MLKTKTAMPAVRSNSVHRSRLLQKMDAGLQCRLTALYAPAGYGKTTLLSQWAHQYGGSTV 60 Query: 61 WYSLDEGDNQQERFASYLIAAVQQAT-NGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLDE DN RF Y++ + ++ E + + S+ + L ELA Sbjct: 61 WLSLDEMDNDLIRFWRYIVFTLSESGFAELSERMEPAMKATSHTSIFTFIDSLLNELAAT 120 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 PL +++DDYH+I++ IH S+ +F+ + P ++ L + SRN VR ++ I Sbjct: 121 TQPLAIILDDYHVISDETIHNSLAYFLEYLPSHVHLYIASRNTLPFSTVKWNVRHEVCHI 180 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + Q F++QE F+ P+ + ++ GW LQL A+S + Sbjct: 181 EAGQFLFSYQETDSFYRQVHDLPLTETQIEQLVKSTEGWIAGLQLAAISLVNTENHDQFF 240 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A ++S+YL EV+ + R FLLK+++L M+ + +T Q L Sbjct: 241 AGFTGSH--RNISEYLFHEVIMRLPEEERSFLLKTSVLARMDAHVCQALTSLPQCQQMLT 298 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + RQ +FL +DD G W+ YH LF +FL + + E ++HR A+ES+ +G E Sbjct: 299 RLHRQNIFLIPLDDYGTWYRYHHLFADFLLSQLEQTAPGEARKLHRLASESYAERGMMDE 358 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 AI HA+AA D + L H L E S +L ++P + +P L+ +L+ Sbjct: 359 AIEHAIAAADYTLAASFLAQHIPVLLQRGEFSSFLRTLDSIPDHANHFSPLFRLIYVFLL 418 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFN----ALRAQVAINDGNPDEAERLAKLA 475 + L + E + + T H +F +RA + G+ + + Sbjct: 419 VACGFTDRAELALTQLEQSAASLEDSTEHQQFLSGLFFVRANLVFATGDFESWIASSSQL 478 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 ELP + + + + L L+ Sbjct: 479 SGELPESPLFYHFNYNTTEPFIRRTRFGLKGMLS-------------------------- 512 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 + ++ + ++ + ++ A+ L+ RL+E+ + Sbjct: 513 ---------DQTEAVGKHFSSILEAHGWKDSLINLYTIQALAEGLYEENRLEESLDHLQR 563 Query: 596 GIEVLSSYQPQQQLQCLAML-IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 V Q L A+ + L G+ AR ++ + + S W++ Sbjct: 564 VRLVALQKQIPGLLVPYALTSAKHKLVEGNFVAARKIISETRETVTSWGG-SYWLNPLQA 622 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-LQGQWRNIARAQILLGEFEPAEIVLEE 713 GD A A L + + R + + + A +L Sbjct: 623 FLAHIAIQEGDIALAKTELSKLPPSILNQPSIQRELEVLTYVRLLLAQQQEQEALRILTI 682 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 L ++ L+ +L + Q G K +A L +AL + ++ F+ EG A Sbjct: 683 LKPSSIREELLISQVDIAILQALAHQQCGNKKEALAFLHEALLIGGNNCYVRSFLDEGTA 742 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 M+ L R+ + Q A + + E + Sbjct: 743 MSHLLHDYQ-------------LRLKKRSQQPGPSVPAAYVNQLLSLFPKKMEKRKAPLI 789 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 PLT +E +L ++ G SN+ IA EL T+K ++ +Y KLGV +R A+ AQ++ Sbjct: 790 EPLTGKEMIILSMLAEGASNKMIADELGNTLGTVKVYLHRIYGKLGVTNRTQALLKAQEI 849 Query: 894 LKMMGYGV 901 + V Sbjct: 850 SLLENSPV 857 >UniRef50_D1RTE8 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RTE8_SEROD Length = 950 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 220/912 (24%), Positives = 377/912 (41%), Gaps = 35/912 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KN 57 LI +K P + R RLL +L A+ RLA++ + AG+GKTTL++QW Sbjct: 58 LILTKFVPPRSSILLLQRPRLLKRLDQAHLRRLAVVCAGAGFGKTTLLAQWHQQLIGQGE 117 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLDE D+ +F YL+ A++ A +++ +S L A L +L Sbjct: 118 RVAWLSLDEDDDDVWQFIPYLLHALRPLYADWDADFWQNMEEQAPSSSLQLLAGLINQLH 177 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 LYL+IDD+H+I + +HE++ + +RH P L L++ SR P L ++ L+ +DQL+ Sbjct: 178 YCPHDLYLIIDDFHMINDAGVHEALSYLLRHAPAALHLIIGSRFHPSLSLSRLQAQDQLV 237 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI Q L FT +E + +F ++ P+ ++ R+ GW +++ +LS H Sbjct: 238 EIYDQDLQFTLEETRNYFSQTVAVPLSNQDALRLRSATEGWIAGMKIASLSPELREDPGH 297 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 ++ YL + VLD + FL+++A L +N L VTG ++ + Sbjct: 298 LI--HNLRGGTRSIARYLKEVVLDPLPAEVLDFLMQTAFLNRLNAGLCNAVTGRDDSEAM 355 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 LE IER LFL +D+ G WF YHPL L + L ++H A+ + Q Sbjct: 356 LEWIERHNLFLSALDEQGYWFRYHPLLQETLCAALRHRADINLKQLHERASHWFAEQLLW 415 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 +EA+ HALAAG + A SL ++ L ++ LP L + AW Sbjct: 416 AEAVRHALAAGKPVHSPGQDGASAQSLAEEGDIDTLVSWMRHLPASVDPSRIDLQINLAW 475 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEF---NALRAQVAINDGNPDEAERLAKL 474 + R+ E LL + + D R+ + + +RA N E+ + + Sbjct: 476 ALAHYFRFDESRQLLDSLDQMVADHRDGMARSAWIKLRVVRAICEAFAENIPESLAIVEP 535 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 L E+P G + + ++L +LA+ + D +++ Sbjct: 536 LLAEVPCGDTWVDGLICNILSYCHVVNLRYAEALAVQRHMPSPDSPLDNLFVSVYRAFII 595 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 ++ QG L+ A A + Q L + A++ + L+ + Sbjct: 596 AQCHLCQGDLENAERYAGNALRQAERYTGPQSTSGATLAPLLAEIAYERRPLESLDPLLA 655 Query: 595 SGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNRLENLL---GNGKYHSDWIS 650 +E++ + P L +C A L + +L G A L + L G + + ++ Sbjct: 656 DRLELIDRFSPPDALSRCYAYLARQALHDGMPQEAERLLEHAQQLAMSRGWRRLQALLLA 715 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA-----RAQILLGEFE 705 +VR+ G + + H Q A R + G+ Sbjct: 716 EQVRVRLQRADRPGAEQLQRQLEQLARHARIDAEHPCQRAIAQHAALSRSRLLLAAGQMP 775 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A +L EL + R R L + W+AG+ + A L L LA + Sbjct: 776 QACKLLAELVTEQENRRDWLTAARLRALWSLALWKAGKNAAACTALQPVLPLAEHPHLMR 835 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 F+ G+ + L + + + + + + R + D + Sbjct: 836 SFLDAGDTLQPLLLHMHEGPAACNEQGAQLRLADKGALTGERLLQSSHDVYW-------- 887 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 L++RE QVL LI G +N+ IA L ++A T+K H++N Y KL V R Sbjct: 888 ---------GLSERELQVLRLIAEGQTNKDIARSLAISAQTVKWHLKNTYAKLNVNSRTQ 938 Query: 886 AVQHAQQLLKMM 897 A+ A ++ + Sbjct: 939 AMSRALEMKLLD 950 >UniRef50_Q2SEA9 ATP-dependent transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SEA9_HAHCH Length = 907 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 287/907 (31%), Positives = 447/907 (49%), Gaps = 22/907 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-AAGKNDIG 60 LIPSK S P H + R RL A L A + L ++ +PAG+GKTTL++ W I Sbjct: 12 LIPSKFSPPQTGSHVLSRPRLEAALIDAASKPLCIVRAPAGFGKTTLMTHWSRRQPGRIA 71 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LDE DN F YL+A + + + L L +L EL+ Sbjct: 72 WINLDELDNDPILFGRYLVATLSRQAPELQGPLSRVEGALSEYDLIWLTGKLCNELSTLD 131 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 L LV+DDYH + N IH ++RF I+HQP L L +L+R P LG+AN RVR L EIG Sbjct: 132 QQLVLVLDDYHHVHNEHIHAALRFLIQHQPPALRLFILTRAEPPLGLANWRVRGMLHEIG 191 Query: 181 SQQLAFTHQEAKQFFDCRLSSPI-EAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + +L FT +EA+QF + + + + GWA LQ+IALSA Sbjct: 192 TDELGFTLEEAQQFLHEKNGLRVEDPQALQEALQRLKGWAAGLQIIALSAPAKDSLNDYL 251 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 R H+ D+L +EVL + FLL++++L N L VT + L+ Sbjct: 252 RRFNGAHT--HVLDFLAEEVLSKQPPERQAFLLQTSVLERFNSELAQAVTEHKESFGMLQ 309 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQGFPS 358 ++E+ G+F+ +D+ W+ YHP F FLR + Q + ++ + ++HR A E W+ + + Sbjct: 310 DLEKGGMFIAPLDEYRTWYSYHPFFAEFLRHQLQLQATSQTIIDLHRRAYEWWLQKAQTA 369 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 EA+ H L GD +++ + L H WSLF LSL+E+ L LP + + +L LL+AW+ Sbjct: 370 EALTHLLQIGDPMLIAEALSLHGWSLFEQGRLSLIEQCLDVLPETVIANDNRLALLRAWV 429 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMH----AEFNALRAQVAINDGNPDEAERLAKL 474 +Q + L +AE + D +E+ AE +AL+AQ+ + + A A+ Sbjct: 430 CLTQADPDSLEEALNQAEQRLPDQQEEAQWRRVSAEISALKAQLYATVEDIEAAHNHARQ 489 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 + + +A SVLGE C+GEL ++ Q E AR D H LW+L QQ Sbjct: 490 -ALAISSSASNAAAIALSVLGETHVCRGELDQARDAFMQAEASARAADSMHGLLWTLGQQ 548 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 +++L QG L + Q QL E HL Q P+ EF+ R RA LL W + EA Sbjct: 549 ADVLRHQGDLVGCHQQQTFILQLAREHHLAQTPVMEFIHRQRADLLIEWLQCHEAAQHCD 608 Query: 595 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 +G+ ++ +P + A+ +L +G+ A + L + L+ + HSDW + + Sbjct: 609 AGLRIVEHLEPHCAVPLNALKASIALQQGEAGAADTYLRKNTLLMREYRCHSDWRALSAS 668 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 714 +++ YW+ + +A WL P A +HF Q + RN+A A + L A +L L Sbjct: 669 IQLRYWRQQRNLSAIHEWLSAEPPPSPAPSHFQQRRARNLAFALLSLDRSREAAQILLPL 728 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 +R L N +L + G + +A LL AL+LA ++ + E + Sbjct: 729 TAQSRQFGLRLSEMENQILTTWACLRLGNEKEASDALLRALQLAEPMRAVASLLQAPEWL 788 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 L+ + L E+ QR+L + HR + + +PE R Sbjct: 789 LDFYAFLLDDSRLSSAERRHLQRVLELSKRQHRPQKKTRN------------MPEQARAL 836 Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLL 894 LT +EW+VL LI G SNE+IA L VA +T+++HI+++YQKLG++ R +A + + L Sbjct: 837 ALTPKEWEVLRLIGEGSSNERIAERLYVAPSTVRSHIKHVYQKLGISSRVEARRVSLDLS 896 Query: 895 KMMGYGV 901 + G+ Sbjct: 897 QGRVAGL 903 >UniRef50_C6D3K4 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3K4_PAESJ Length = 863 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 194/907 (21%), Positives = 362/907 (39%), Gaps = 63/907 (6%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DI 59 +L+ +K+ PV + ++RERLL L R+ + +PAG GK+TLI+QWA Sbjct: 7 ILLKTKIRLPVVKKNLIIRERLLDSLEQGMQGRMVTVCAPAGSGKSTLIAQWAQSARIQT 66 Query: 60 GWYSLDEGDNQQERFASYLIAA-VQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W SLDE DN RF Y++ A ++ + + +++ ++ L ELA Sbjct: 67 SWVSLDERDNDIARFWRYVLNAYMETGPSSLADSLSAVGALVSGSTVNAIIDTLLNELAA 126 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 H P+ LV+DDYH I IH S+ +FI + P + +++ SR A R + + Sbjct: 127 THDPIALVLDDYHHIEQAEIHNSLSYFIEYLPFHHRIIIASRGEISFDAAKWLARGERTD 186 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 IG QQL FT +E ++F +E + ++ + GW LQL ++S + Sbjct: 187 IGMQQLHFTQEETQEFCRSA-GIYLEQRHTRKLFEKTEGWIAGLQLASISLQAQQDIDRI 245 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 A + +S YL EVLD + FL ++++ M+ + + + + L Sbjct: 246 IAGF--DGSNEKVSSYLFQEVLDKLPSDVTDFLHQTSVFERMDAEVCNQAFYRSDSREML 303 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 E++ LF+ +D+ WF YH LF FL+ R + + + + H AA++++ A+G Sbjct: 304 EQLRTLNLFVIPLDNHNGWFRYHSLFAEFLKNRLRSRSSGQWLQYHHAASQAFAARGMLD 363 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 +AI HA+A + + L + EL+ L E ++A+ + L++ QA+ Sbjct: 364 KAIDHAIAGENYKEAAERLEEYIPDALKQGELASLLERIQAVSEHIPIP-ASLLIYQAFA 422 Query: 419 MQSQHRY----GEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + V L R E + + L++ + G ++ + Sbjct: 423 YMLTGQMHFSAETVEKLEKRYEQPETAAELEPLQGGMLFLQSNLLFYTGRYEQWDSFVGY 482 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 L+ + P +++ E + R+ + S Sbjct: 483 RLQGVLPEDPIFYNFNYNMI--------------------EPLVRRTAFGLKGILS---- 518 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 ++ ++ + Q ++ ++V+ ++ + W R ++ R Sbjct: 519 ----------ADTERIGQRFVSVLEQHGWGQSLINLYVVQALSEGYYEWNRQSDSLQLVR 568 Query: 595 SGIEVLSSYQPQQQLQC-LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 + + Q L + A G A ++ + + K W+ Sbjct: 569 KLEQSDRARQTAGLFVPNRITLSRIHAANGQFQKAHEAIDEAIQ-MADQKGEYHWLYPLR 627 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-LQGQWRNIARAQILLGEFEPAEIVLE 712 R + A A + + + ++ AR G+ A LE Sbjct: 628 ASRAHLYAKEDKLAEAKSEISKLRMSDRIQPASNRWIEYTVYARILTAQGKTTEALKQLE 687 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 + + + ++ + +Q G + +A +L +AL + G+I FV EG Sbjct: 688 FIKSSLEQDHCLLVRTEISIVQSLAEYQRGNRGEAMHILHEALVIGETNGYIRSFVDEGI 747 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHF---DENFVERLLNHPEVPE 829 M + L Q ++ LRE +Q + + L +P P+ Sbjct: 748 PMKRLL-------------QMYTEQRLREADQDAWQRVSLDYVKGLLEYIPELENPSQPQ 794 Query: 830 LIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 PLT++E +L L+ G N+QIA +L + T+K ++ +Y KLGV+ R A+ Sbjct: 795 PALIEPLTEQETFILRLLGQGAPNKQIAAKLALKEGTVKVYLSRIYAKLGVSSRTQALAA 854 Query: 890 AQQLLKM 896 A+QL + Sbjct: 855 ARQLDGL 861 >UniRef50_A9AVE7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AVE7_HERA2 Length = 1019 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 233/923 (25%), Positives = 377/923 (40%), Gaps = 46/923 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIG 60 L+ +KLS P V R + + L L+++ AG+GKTTLI++WA + + Sbjct: 116 LLHTKLSIPAVRSRFVSRRSIFTVFNQML--PLTLVSASAGFGKTTLIAEWARTQPYPLA 173 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LD DN+ RF Y + A+ + Q L+ + L L + Sbjct: 174 WLTLDSNDNEPSRFWGYSLTALHMVAPLLTTEALALLHAPQAIDLSFVLTNLINNLMLLN 233 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 PL LV+DDYH I N IH + + + H P+ LV++SR P + +A + +L I Sbjct: 234 QPLTLVLDDYHTINNQAIHNQLTWLLDHAPQAFRLVLISRTEPPMPLARWQAAGRLNTIL 293 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 +L F + + +FF + + A + + GW LQL ALS + Sbjct: 294 VDELRFNNSDIHRFFHTTMQLDLAADVLASLAARTEGWIAGLQLAALSLQGQPELTMSEG 353 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + N L DY EVL A + FLL++AIL + + L VT L+ Sbjct: 354 LDSSVSNQRALFDYFSHEVLQQQPSAIQQFLLQTAILDQLCEPLCAAVTDHGATAGMLDY 413 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESWMAQGFPSE 359 +ER LF+ +D W+ YH LF L + + AA + ++H+ A+ + G+P+E Sbjct: 414 LERSHLFVVALDRKHHWYRYHQLFRESLLHHAKQQWGAAGIAQLHKRASCWFEQAGYPAE 473 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 AI+HALAA D ++ + + E ++L+ L ALP + N L L AWL+ Sbjct: 474 AINHALAAADFERAGRLIAKIGFRMLWRGEHTILKGWLHALPATIIEHNAYLCLWSAWLL 533 Query: 420 QSQHRYGEVNTLLARAEHEI------KDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 Q++ L+ + + + + AL+A +A G+ L Sbjct: 534 VEQNQLEASGYYLSLIDELLSHTMSDEAAETRAIDGHRKALQASIARRRGDMPTTLALTH 593 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE---------------QMA 518 AL LP R + T L G+ + A + Q + Sbjct: 594 QALNALPRDSALLRSMITRNLCAGYIISGDTVAAEAALHQALCEQELLEASIASDHHHPS 653 Query: 519 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 578 + L I+ + + + QG A + + L EQH Q + Q Sbjct: 654 ERQHAHTIRLLLWIETTSLRWLQGQFHAAADLYRQTLHLAREQH--QHAVSAIACVNLGQ 711 Query: 579 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQ-CLAMLIQCSLARGDLDNARSQLNRLEN 637 +L W L EA + GI + + L L + A G+ A + + + Sbjct: 712 ILRQWNNLAEAREYLQQGIGYSLNVGADVTRRNGLIELARIQQAHGEPAQALATMAQAVA 771 Query: 638 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF--LQGQWRNIA 695 L + A + GD AAA W + + F + +A Sbjct: 772 LAQTLPSPRGLL-WATTWQARLQLAQGDLAAATRWAQEYQRLANPFPQFNIYDAEDLTLA 830 Query: 696 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 755 R I G+ + A +LE+L ++ + + LL S A RVL+ AL Sbjct: 831 RILIAQGQHQQASALLEQLLPAYQAAGRLPSVIEVYLLQALNLAAQQDWSVAGRVLIQAL 890 Query: 756 KLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE 815 +LA ++ FV EG A++ L Q+ + + Q LR+ Q Sbjct: 891 RLAEPENYLRLFVDEGPALSNLLVQI----------EPQVQATLRQYVQRLLVVCELPRS 940 Query: 816 NFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLY 875 E+L P PL++RE V+ L+ +G+SN++IA +L V TIKTH++N+Y Sbjct: 941 TTPEQL-----SPIYRLIEPLSERELTVIRLLAAGFSNQEIAQQLVVTLNTIKTHLKNIY 995 Query: 876 QKLGVAHRQDAVQHAQQLLKMMG 898 KL V R A+ A++L + Sbjct: 996 SKLAVTSRTQAIARARRLNLIAN 1018 >UniRef50_C5RKV5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RKV5_CLOCL Length = 895 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 203/919 (22%), Positives = 393/919 (42%), Gaps = 54/919 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK----N 57 LI +KL+ P+ + R L KL+ ++RL L+T+PAGYGKTTLI+ W + K + Sbjct: 7 LINTKLNIPILSSKVIKRTNLFKKLNSFLDYRLILVTAPAGYGKTTLITSWLSEKKKNKS 66 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQ--KRQYASLTSLFAQLFIE 115 + W SL E DN+ E F SY +V + + E + Sbjct: 67 TVAWLSLGEEDNEAECFWSYFFLSVYKKISEINHCIEDSKSFYNESATFNNLYLSHFINT 126 Query: 116 LAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQ 175 +A+ + + +VIDD+HLITN I E+M+F I++ P+N+ L+++SRNLPQLG+ LR D Sbjct: 127 IAKINEGIIIVIDDFHLITNDKIIENMKFLIKNMPDNMHLLLISRNLPQLGLPRLRAADS 186 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 +LEI L FT +E +FF+ + ++ + GW +Q+I LS + + Sbjct: 187 VLEINQYDLCFTPEETTEFFEKVSGTKFTYDIYHKVWSESEGWIAGIQMIGLSMKNS--- 243 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + G N + +Y+ +EV +++ T+ FLL ++I+ + AL + N Sbjct: 244 SRNITGDQDGKNNKFVFEYIAEEVFLSLEEDTKKFLLYTSIIDEFSCALCDYLLDINNSS 303 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 ++EIE+ LFL +D+ F YH LF NFLR++ + + ++ A + Sbjct: 304 ELIKEIEKANLFLVSIDNEQSCFRYHNLFRNFLRKQLEKLGIETIHKLFNKVARWYENSN 363 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 ++A+ + + I+ + + E +L + + LP D + N +L++ Sbjct: 364 QLNKAVESYIKGKNFHKAVSIIEQLSGEIACRGEARVLHKWNQLLPIDIVKSNTRLIMNS 423 Query: 416 AWLMQSQHRYGEVNTLLARAEH----------EIKDIREDTMHAEFNALRAQV-AINDGN 464 AW M ++ G+V+ + + + + R+ + E AL + Sbjct: 424 AWAMVAEGDIGKVSEYIKMVQACEAVSFLKRSKGDEERDSQVRVEILALNSSANLTIINE 483 Query: 465 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 524 +E + A+ L F ++++ ++ KGEL +++ Q++ + + + Sbjct: 484 VEEIITDCEKAIPYLNEEEFLTQLIFFNI-ARAYFLKGELGKAIHYFQKSLERSIKTKET 542 Query: 525 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 584 ++ + + + QG + A + E+ + P+ L A + + W Sbjct: 543 YFRILTNKALTIYKKLQGNYKEAKQELEELISSLKVNGDVISPVLGILYAELADIHYQWN 602 Query: 585 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 644 +D+A AR G+ + + + + + +L L NA + + ++ K Sbjct: 603 EIDKAMELAREGLALGLAGEDSWVI------AENNLILAKLYNATNFHKEYQEIVDKTKK 656 Query: 645 HS------DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN-HFLQGQWRNIARA 697 + D + G WL A + + + Sbjct: 657 YLTDNKFFDTSLKFDSFNAEIMLSKGKVNPVLAWLSDIAPVISDDLIAIYPEVFIVKVKL 716 Query: 698 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 757 I +F+ A ++ +++N +L L +L ++Y + G + A + A++L Sbjct: 717 YIYENQFDKARELISTIDKNVEKYQLNKVLVETKILSAKVYKKLGYIAKAISEIEKAMEL 776 Query: 758 ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENF 817 + + F+ EG M L++L + ++ + ++ Sbjct: 777 SWQQKITRIFLDEGSWMEDMLKKLKNRLSGDDVSLYLDYLLVS----------------- 819 Query: 818 VERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQK 877 + E+ + L++RE ++L + G +N +IA + V+ T+KTH+ N+Y K Sbjct: 820 ---FNSTSEIIIAVEDELLSKREIEILQSLEQGATNSEIAEKSFVSINTVKTHLLNIYTK 876 Query: 878 LGVAHRQDAVQHAQQLLKM 896 L V R AV A++L + Sbjct: 877 LDVHSRTRAVVKAKELKLI 895 >UniRef50_A4BAG8 ATP-dependent transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BAG8_9GAMM Length = 873 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 208/878 (23%), Positives = 391/878 (44%), Gaps = 28/878 (3%) Query: 28 GANNFRLALITSPAGYGKTTLISQWAAG------KNDIGWYSLDEGDNQQERFASYLIAA 81 A L ++ +PAG+GKTT + + W SLD D+ FA+Y I+A Sbjct: 7 AACKLPLVVLCAPAGFGKTTAALHGFQALKDDEPEARMAWLSLDPEDSDPFNFAAYFISA 66 Query: 82 VQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHES 141 + + + L SLF QL EL H L +V+DDYH I + +H + Sbjct: 67 IAKQVR-LSDQLCHSGVHDRNTQLKSLFGQLLFELDRIHQRLIVVLDDYHAIDSEEVHAA 125 Query: 142 MRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCR-LS 200 + + +H P ++TLV+ +R+ P I +LR++ + ++ + L F EA+ FF Sbjct: 126 VAYLAKHLPPHVTLVLTTRSDPPASIMSLRLQGLVADMSADLLGFNVAEAQTFFQQVGAG 185 Query: 201 SPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVL 260 ++ + R+ + V GWA LQLI L + AR + DY EV Sbjct: 186 FQLDEGDVKRLLEHVEGWAVGLQLIVLGLKSKPSYDELKARLEQKDLNA--IDYFDSEVF 243 Query: 261 DNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCY 320 D++ + F+L +++++ N + + + N LE ++RQ LF+ + ++ +WF Y Sbjct: 244 DSLPEDVKRFMLSTSVVKRFNAEVAEALAEDVNVHEVLEYLQRQHLFIVQFNEPQQWFRY 303 Query: 321 HPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNH 380 H L +FL+ + + ++ E+H A+++++ G+ A+ HA+ + D + DIL + Sbjct: 304 HHLLRDFLKHKLITQSGGDVRELHHKASQAFLKMGYIVGAVDHAIRSQDQKQITDILRTY 363 Query: 381 AWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEI- 439 L + + L++ L L +++ + QL L+ W+ V+ +L AE I Sbjct: 364 GNDLNHKAHYDLVKRCLAELSDETISSDTQLTLVSCWVESIYGDPNRVDHILTMAEAHIE 423 Query: 440 -KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL 498 + + AE+ +R+Q + G+ AE+ A+ ALE P R + V Sbjct: 424 NDNADSRQLRAEYQTVRSQAYFSMGDFVGAEQAAREALELFPDNNTR-RQSPLLIYANVK 482 Query: 499 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 558 +GEL R+L++ +++E ++RQ LWSL QQ++I + + ++ + Sbjct: 483 FEQGELDRALSIYEESELLSRQEANHDAVLWSLNQQAQIWKQRCDFARSISLAKEVQEYA 542 Query: 559 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 618 + ++ F + +A+L L EA + ++ L++ Sbjct: 543 AQHNVNSGFNACFSLFNQAELALEAYHLREARLLINEVGLLCQNWDEFWSQHLFGWLLKM 602 Query: 619 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 678 + +G AR + E +L I + +V+++YW D WL+ T Sbjct: 603 EMLKGKPTVARDLAAQHEGILARENVAEHLIPYSMEVQLLYWWQNEDIKKIETWLKATPP 662 Query: 679 PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL---NENARSLRLMSDLNRNLLLLN 735 + ++ R I G ++ A + LE++ + R LL Sbjct: 663 VDKFHSMRDYVILRAQIYGHIACGRYQEASMRLEQVYSPLREFEGRPYQLEFIRLGLLHV 722 Query: 736 QLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRA 795 L ++S+A L+ L L + ++ + + + ++ ++ LPE + Sbjct: 723 ALLNLQNKESEAMTELMLLLPLIQQYSIVASILFLRQWVMPLFEKMD-VDALPEDQARFV 781 Query: 796 QRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQ 855 +++L Q + EVP+ + ++++EW+VL I G SN+ Sbjct: 782 EQLLILYKQRNTSS-----------RRGEEEVPDGLLALGISKKEWRVLQYIIDGKSNDD 830 Query: 856 IAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 IA + +A +T+KTHI NLY+KL VA+R++A+ ++L Sbjct: 831 IAQTMFIAVSTVKTHINNLYKKLSVANRKEAIALGKEL 868 >UniRef50_C6CXC3 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXC3_PAESJ Length = 866 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 213/903 (23%), Positives = 359/903 (39%), Gaps = 64/903 (7%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWYS 63 SKL P + V R RL L + RL L+ +PAG+GKTTL+S W W S Sbjct: 17 SKLLVPNAASNYVDRPRLSDMLDRSGTCRLTLVAAPAGFGKTTLVSNWIGRRAARAAWLS 76 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL-AEWHSP 122 L+ DN RF S AA+ + G + S S + EL Sbjct: 77 LEPADNTFVRFWSCAAAAIDRTIPGFYEAAMPIFLSFGETSAESAMSFFLNELIGRITGE 136 Query: 123 LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 + L++DDYH I NP IH + + + H P L LV++SR +P L ++ +R R Q+LE+ + Sbjct: 137 MILIVDDYHFIDNPSIHNGLAYLLDHLPAALHLVIVSRTVPPLPLSRMRARRQVLELDGR 196 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 L FT EA + + + + E + + GWA L L S ++S R Sbjct: 197 HLRFTADEAMELQNKTSETRLTPEEMTELDAKTEGWAVGLILAFHSLA--GTGGNESFLR 254 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 + ++ DYLVDEV+ + FLL+++IL + +L VTG + + +E Sbjct: 255 SFDGHNRYVFDYLVDEVIHRQPQNVQSFLLRTSILERFSVSLCDAVTGSAHSASAISYLE 314 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESWMAQGFPSEAI 361 + LF+ +DDT W+ YH LF LR R A E+HR A + +G EAI Sbjct: 315 KANLFVSPLDDTRTWYKYHHLFAEALRNRLNETYDLATRSELHRNAHRWFGERGLYREAI 374 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HALAA D + H + E + L L +P S++ L Q + + Sbjct: 375 KHALAAEDFDSAGQYMERHLPEMIGSGEEADLLRWLNEMPLRSIVRFTNLFFFQESVQAA 434 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 + R + L + + E ++ + + Sbjct: 435 KGRAADARRYLDQVTALLDTEPELIERERIKEMQVHIRMYGN------------------ 476 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 + + +G++ + ++ + +H + +++ E L + Sbjct: 477 --------------SLSYYEGDIDGFIGQLKSNLDLLVRHGS----IANVVNMGEALLYR 518 Query: 542 GFLQTAWETQEKAFQLINEQHLE------QLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 G + ++ A+ N E + V + A LL+ R+ E+ + Sbjct: 519 GPVGFGGRLRKIAYLSSNVSADEKLSLVLHRSLEGLGVILLADLLYELNRIKESRLTLEK 578 Query: 596 GIEVLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 + + P +L + A G +D AR+ + R + + W Sbjct: 579 ALYGGAFPRNPAALAPGYILLSKILQAEGQMDQARNVILRAIEEMRECR-SPRWQMIVEA 637 Query: 655 VRVIYWQMTGDKAAAANWL-RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 TG+ AAA W+ + + + + +AR + GE A L Sbjct: 638 RLARLQLATGETEAAAAWINARHIRIVERADVSREYENFTLARVLMSQGELRKALGWLSR 697 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 ++ A+ ++ LLL + G DA L A +LA GFI F+ EG+A Sbjct: 698 ISLEAKQADRIASRIEALLLQAICNKELGDYGDAVGALAQACELARPEGFIRIFMDEGQA 757 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 + + + +L E A + I++ ++ + T Sbjct: 758 LTPLFERWLSEASLDEEMAAYANLLRERISEGGWTASYARMKDNL--------------T 803 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 LT RE +VL I G SNE+I G+L ++ T+K + N+Y+KL V +R A+ A+++ Sbjct: 804 VKLTGREREVLRKIGEGLSNEEIGGQLFLSTGTVKKYAYNIYEKLQVKNRVQAISRAKEM 863 Query: 894 LKM 896 + Sbjct: 864 GLL 866 >UniRef50_A9B4I5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4I5_HERA2 Length = 876 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 221/907 (24%), Positives = 388/907 (42%), Gaps = 49/907 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-AAGKNDIG 60 ++ +KL P + V+R L+ +L A++ L LI++PAG+GK++L+S W A + + Sbjct: 5 ILATKLHIPQLRPNGVMRSHLIQRLDAASHASLNLISAPAGFGKSSLLSAWHATSQRPMA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LDE DN RF SY + A+Q + + Q ++ L EL+ Sbjct: 65 WLALDERDNDPSRFFSYFVHALQTLIPTLSSASLRLIH-TQPPAIEQALTNLINELSVVG 123 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 S + LV+DDYH+I N I +++ F + H P +L L++ +R P L +A LR R QL E+ Sbjct: 124 SSVSLVLDDYHVIENHAIDQALSFLLEHLPASLRLIIATREDPNLPLARLRARGQLHELR 183 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 S L F+ EA+ F + + + A+ + + + GW LQL ALS +Q T + A Sbjct: 184 SADLRFSLDEAQLFLNQAMGLALSPADVAALENRTEGWIAGLQLAALSMQQQTDRSRFIA 243 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT--GEENGQMRL 298 + + DYL++EVL A + FLL+++IL M +L + G +GQ L Sbjct: 244 SFSGSHH--FVMDYLLEEVLQQQTPAVQQFLLQTSILNRMCGSLCDALVSNGTNSGQQML 301 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE----LPEIHRAAAESWMAQ 354 E++E+ +F+ +D W+ YH LFG LRQR Q LA + L ++H A+ + A Sbjct: 302 EQLEQANMFIVPLDHERRWYRYHHLFGELLRQRLQRSLAQQATTSLEQLHIQASIWFEAN 361 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 EA HA AA D ++ L L + L+ALP + L + P L + Sbjct: 362 ELELEAFEHAAAANDTERAERLIEGKRVPLQFQGALLPIMAWLQALPTNVLNQRPSLWVT 421 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIR----EDTMHAEFNALRAQVAINDGNPDEAER 470 A + + + + L AE I + A+R +A++ + + Sbjct: 422 AAAVWLATGQVNGIEQRLQAAEQAIDQHPLTPKLHDLIGRIAAIRGTLALSQNDASQIIA 481 Query: 471 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 +K ALE L R LG +G+ + + +Q + ++ + + Sbjct: 482 QSKRALEYLAIDNLSFRTSTVWKLGYAYQLQGKRSAAKQAYEQAISIGQRSGNLVTVVLA 541 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 I + + L+ A T ++ + + L L A++ + W +LD+AE Sbjct: 542 SIGLGNLQESNNQLKLAATTYQQVLEASRQLALPAANCGAEL--GLARIYYQWNQLDQAE 599 Query: 591 ASARSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 + ++ Q + + C + + +A+ LD A L + ++ + Sbjct: 600 QHYQRALQAAQLLQHTDREVACYVIKARLLIAQNQLDQASLLLEQASAAAHQHRHTTQ-P 658 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI 709 + +V M G A+ + P + A+ + + A Sbjct: 659 AKIAAEQVRIGLMRGQVQQASQIAQTHQIP------------ISQAQVFLAQQQPSAALA 706 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 +L+ A++ +L + + AQ+VL +L A GF+ F+ Sbjct: 707 LLQPALTIAQTNSWHDQSLWIKVLQSLALAALEDYAQAQQVLKPSLISAEPEGFVRVFLD 766 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPE 829 +G+A+ L L ++ +IL + Sbjct: 767 QGQAIQNLL----SHINLTTSSKNYVNQILAHFTTERMPQLY---------------PTT 807 Query: 830 LIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 L+QRE ++L LI G+SN+ I +L +A T+K H R +++KL V R +AV Sbjct: 808 PSLPEMLSQRELEILSLIAQGHSNQAICQQLHLALDTVKGHNRRIFEKLQVQRRTEAVAR 867 Query: 890 AQQLLKM 896 A++L + Sbjct: 868 ARELGLL 874 >UniRef50_UPI0001789493 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789493 Length = 873 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 197/907 (21%), Positives = 355/907 (39%), Gaps = 54/907 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 ++ K+S P +H + R+RLL ++ + +L I +PAGYGK+TL++QWA Sbjct: 9 ILKMKISLPGLKEHLIRRDRLLQDMAAGHKGQLTTIIAPAGYGKSTLLAQWAHETDERSA 68 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGH-CAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLDE DN RF Y+ A++ A Q AS+ + L EL E Sbjct: 69 WVSLDERDNDPVRFWRYVAASLASILPEAQGARLMHHTQLLPSASIETFLDTLISELYED 128 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 PL L+++D H I + IH + + I + PE++ L++ SR V ++ I Sbjct: 129 SEPLNLILEDLHSIHSSTIHGGISYLIDYLPEHIHLLISSRTELPFPTIKGVVNHEVYLI 188 Query: 180 GSQQLAFTHQEAKQFFDCRL---SSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 G +QL FT++E ++ F S + + E + + GW T LQL ++ R + Sbjct: 189 GMKQLEFTYEETERLFRHASNGGHSNLTSMELDTLRNQTEGWVTGLQLAVITMRTGSGLE 248 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 N +S YL EV+ + FLL++A+L ++ + VT + + Sbjct: 249 GFVDD--MKGNPLLVSKYLFQEVVSKLSPDVFSFLLQTAVLSELHPQVCDAVTDLSDSRP 306 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 LEE+++ LFL +D+ +F YH LF FL Q E E + HR A + + + G Sbjct: 307 MLEELQKLNLFLVPLDEHQTFFRYHHLFSQFLLDLLQREFDGEYTKRHRLAGQYYASVGS 366 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 EAI H LAA D ++L H S+ E++ L + + + P++ L A Sbjct: 367 MDEAIDHMLAAQDFGHAVNLLEQHMQSVLELGEIATLLKWFDRIHPSYPMT-PEMSLAHA 425 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEF----NALRAQVAINDGNPDEAERLA 472 +++ +L E + + +R+ + +G+ + + Sbjct: 426 FVLVLTGDLERSERMLILIEEACAALESSERREQLMSSILFVRSNLVFLNGDFGKWFAFS 485 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + L+ L P ++ + + R +++T + + + Sbjct: 486 EGILDNLMPDNP-------------MYYQFDYNRREPYVRRTSLGMKGTLSADTERIAHL 532 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 ++ M+ ++ + + + W RL E Sbjct: 533 FTG---------------------VLESHGWAHSLMNLYVKQSLCEGYYEWNRLAECRQL 571 Query: 593 ARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 + + + + A G A L+ + + S W++ Sbjct: 572 LVQIRNAPPAKETMGLFVPLHITEARLFAAEGKFHLAHYALDEACS-AALARKSSLWLAP 630 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFA-NNHFLQGQWRNIARAQILLGEFEPAEIV 710 VR + + G A A + + + ++ + R A + Sbjct: 631 LKAVRSLIYIREGRIAEARKEVAELPVSVKDKPAYSRETEYLALVRMLGRQRRETEALRL 690 Query: 711 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 770 LE L A + S + L L Q G++ + +L +AL++ + G++ F+ E Sbjct: 691 LELLKPQAEREQQRSSIIEITSLQALLEHQRGQRQQSLHLLGEALRVGAQNGYVRTFLDE 750 Query: 771 GEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPEL 830 GE M Q L+ + R L + + E ++ E P+ Sbjct: 751 GEDMCQLLQLYSSRLGQEDGLSLEELRTLE-----YARTLVKRFPGYSEADISSAETPQQ 805 Query: 831 IRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 L + E +L LI G +N+Q+A L ++ TI+ ++ LY KLGV R A+ A Sbjct: 806 TLPERLNRNEMNLLHLIRQGAANKQMAAALGLSEGTIRVYLSRLYGKLGVTTRTQALVKA 865 Query: 891 QQLLKMM 897 Q L + Sbjct: 866 QSLNLLE 872 >UniRef50_UPI000178942B ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178942B Length = 865 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 193/900 (21%), Positives = 349/900 (38%), Gaps = 62/900 (6%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA---GKN 57 +++ +KL P D + R + + + +R+ I +PAG GKTT + Q+ Sbjct: 6 VILRTKLQPPALRDSWISRSVWDVRENQGSGYRIITIVAPAGSGKTTALVQYMHHEGQHR 65 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQ-ATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 W +LDE DN RF Y+I ++ +G + + S Q +E+ Sbjct: 66 LASWLTLDEQDNDLRRFWRYMIHSLLPNLPSGIENRLLPLLVPYSGQVIYSFLDQFIMEM 125 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRVRDQ 175 + +V+DDYH IT+ IHES+ ++I H P+++ + + SR L G+ + + Sbjct: 126 HGISLSINVVLDDYHSITHQEIHESLNYWIEHLPDSVRVFIASRAELPLEGMGRWLLSGR 185 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 L IG+Q+LAF ++A L + + + + GWA LQL ++ RQN + Sbjct: 186 LQRIGAQELAFNEEDAGSLCQHTLGRSLAPEKLNSLVRRTEGWAAGLQLALIAQRQN-EA 244 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 A + LSDYL EV+ +D R FLL+++++R + + VT Sbjct: 245 AGIPGSDAFSQSNRQLSDYLSHEVMRGLDKPLRQFLLETSVMRRFHADICAAVTELPQCD 304 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 LE ++ +GLFL +D W YH +FG+FL + + E++R A++ + +G Sbjct: 305 GMLEVLKAKGLFLIPLDHQERWHRYHHVFGDFLSSLLKQQNPERWIELNRRASQVYAREG 364 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 + EAI +AL A D M ++ H L E LL+ L P L + +L+ ++ Sbjct: 365 WHEEAIDYALLAEDYEMAAALVDQHMMELIKKGEFDLLQLWLNRFPEGIRLPD-RLLFVK 423 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKD----IREDTMHAEFNALRAQVAINDGNPDEAERL 471 ++ + + LL R E + R+ + ++A +A N DE + Sbjct: 424 IFVYSLLGKRDQARDLLERLEAGLYGLPIMERQLEWLSGLFFVKANLAFNSRQFDEWFQF 483 Query: 472 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 A+ LP + + + R + L Sbjct: 484 AQTIEHRLPEDPIFFN--------FNYNNREPFVR---------------NTPFGLQGVL 520 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + + + ++ E M +++++ A+ + LD Sbjct: 521 TNTT------------AQVGTQIVSILERHGWEDSLMCQYVMQAMAEGFYEKNELDACVF 568 Query: 592 SARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 +E P + + + G+ +AR+ + N++ + W S Sbjct: 569 WLDRLLEGRRYKDVPGLFIPIRLTMAKLKRKEGNHHSARAIVQDALNIME-AREDILWCS 627 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-LQGQWRNIARAQILLGEFEPAEI 709 V G+ + A + + AR I + A+ Sbjct: 628 ALRAFLVEIDLRDGELSQAEAGFQELNLSSMQRISLEYSLEIMTWARLLIHQQRADQAQA 687 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 +L L A ++ ++L + G A L +AL L + F+ Sbjct: 688 MLAALRIQAEEAGSINITASVIVLQAYAEYTRGNVKVATLFLQEALSLVMPYRYKRTFMD 747 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPE 829 EG + Q L++L + + A E + L ++ + Sbjct: 748 EGNWVYQLLQELNTNGDAMK-------------TAPLKDYMAELMEEMRQEKLASLDLLD 794 Query: 830 LIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 T LT +E VL L++ G +N+ IA EL + T+K ++ +Y KLGV+ R AV Sbjct: 795 HFGTYGLTPQETTVLALLHRGDTNQSIADELGLTVGTVKVYLNRIYSKLGVSSRVQAVLK 854 >UniRef50_B8KM86 Transcriptional regulator n=3 Tax=Gammaproteobacteria RepID=B8KM86_9GAMM Length = 925 Score = 437 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 209/910 (22%), Positives = 368/910 (40%), Gaps = 31/910 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIG 60 LI +KL +P V R+RLL K+ A + L L+++ AG GK+ +++ W + Sbjct: 25 LIRTKLHKPPLPSDYVCRDRLLDKMDKAMDVPLTLVSAGAGTGKSVMVAAWLEDRGHPGA 84 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLD+ D RF YL+A ++ G + + + + A EL Sbjct: 85 WLSLDDSDGDLRRFLRYLVAGLESLHPGSLQDTAALLDAPELPPVAVIAAHFTNELDRST 144 Query: 121 SPLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 P LV+DDYHL+ +HE +R +++H P++ L+++SR P L + +LR ++ EI Sbjct: 145 MPQVLVLDDYHLLDPKSSVHELIRGYLKHPPQSWHLILVSRKDPPLALGSLRGAGKINEI 204 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 Q L F+ E + S + + I V GWA L+L+ L+ RQ Sbjct: 205 RQQDLPFSIAETAGLLSGSVPSGLGEKQIEAIQLRVEGWAAGLRLVGLACRQAPDIDRFI 264 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEE------- 292 A+ G N + YL+DEVL + A +L+K+A+L AL+ + + Sbjct: 265 AQ--LGGNLPDTTAYLMDEVLTTLPAAFSGYLIKTAVLDRFCPALLDAIHPDAEPATTEM 322 Query: 293 NGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESW 351 +G +E + LF+ +D EWF YH +F L + + E+ +H A+ + Sbjct: 323 DGTRFVELLNHSNLFVVPLDANCEWFRYHHVFQQLLLDQLKQVCSPNEIHALHSNASTWF 382 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 QG EAI HA+ A D DI+ H + S L+E L LP + P L Sbjct: 383 EQQGCIDEAIKHAV-ATDVQAAADIVERHRNEPLRNDRWSELQEWLDMLPASIKMSRPSL 441 Query: 412 VLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERL 471 +L WL + + +L + D+ + AE N + VA +G E+ R Sbjct: 442 LLCHGWLASFRLEIDVMAVILQTLDGLEVDLANPILVAEKNFFSSVVAYWEGRFAESLRF 501 Query: 472 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 ++ A+ P + + L G ++L+ ++ +A + + Sbjct: 502 SEAAIAVNPGAADMAAGESHLYRALSLQVTGHTRQALSQLRAELNIAPKGSEPYQTRLVA 561 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 S + G L+ A E + + L + + A R + Sbjct: 562 A-LSFVHLLNGDLELAHEHGRQTVTVAIRNKLPHPKLWGEFICGVASFC--AGRFRQTSD 618 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 + + + + C GD +A + + K + I+ Sbjct: 619 ILSHCTDSAYIFDIRAACDAYVGVALCHQFNGDNASAEKLMAEGIAYAEDVKG-PEAIAV 677 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA--RAQILLG---EFEP 706 + + G+ AA W R + + I R I G E E Sbjct: 678 VASAQARLQLLQGNAKAALRWARRESDEANPVEMLFWIEVPKINKYRVLITAGTKTECEK 737 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 + + +L ++L + + + +L + GR+++A+ VL++ L+L ++ Sbjct: 738 SLGDVVQLRTQLQALHMKNHIIPVAVLQALGLAKLGRENEARTVLIECLELGGEAEWMQP 797 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 FV GE + L + + E Q + + R K P Sbjct: 798 FVEAGEPLIGMLEGISKTGHHREFIQSVLSAYDQYVAAASRGKGTGVA---------TPH 848 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 VP+ + + LT RE +L L+ N+QI L ++ T+K H++++YQKL V++R+DA Sbjct: 849 VPDHVGLTDLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDA 908 Query: 887 VQHAQQLLKM 896 + A + + Sbjct: 909 IAKATRTGLL 918 >UniRef50_A9B6R2 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B6R2_HERA2 Length = 870 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 240/905 (26%), Positives = 379/905 (41%), Gaps = 49/905 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 ++ +K PV + VVR +LL +L ++ RL ++++PAG+GKT L+SQW A K + Sbjct: 5 ILTTKCYIPVPRLNGVVRSQLLERLKERHDRRLTVVSAPAGFGKTMLVSQWIANCKQPVA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LD+ DN RF YL+AA+Q Q + S ++ L +LA Sbjct: 65 WLTLDQNDNDLARFLVYLVAALQTIEPTFGLEIIQRLQAPELPSTETILFLLLNQLATIE 124 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 LV+DDYH +T I E+MR + P L +VV++R P L +A LR R QL E+ Sbjct: 125 QQSILVLDDYHWLTAKPIAEAMRLLLERLPPQLQIVVITREEPDLPLARLRARHQLTELR 184 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 L FT EA QF + + A+ S + D GW T LQL A+S + S+ Sbjct: 185 VADLRFTVAEAHQFLSQTMELDLLASASQALTDQTEGWITGLQLAAISMQGQQASSPLID 244 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR--L 298 N + DYL++EVL + FLL +++L M +L V L Sbjct: 245 GFT--GNHRFVLDYLLEEVLQQQPAEIQTFLLVTSLLDRMCGSLCEAVLAAAPASGAATL 302 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQ-WELAAELPEIHRAAAESWMAQGFP 357 +ER LF+ +D W+ YH LF + LRQR L +LPE+HR A+ + A GF Sbjct: 303 AYLERANLFIVPLDHERHWYRYHHLFADLLRQRLAISSLGHDLPELHRRASHWYEAHGFG 362 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 EA HA AA D + ++ SL ++ L + L +P + P L A Sbjct: 363 IEAFRHAAAANDVAHIERLIDQQQISLHFRGTVTTLLDWLATVPKSVFEQQPSLWWRHAS 422 Query: 418 LMQSQHRYGEVNTLLARAEHE----IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 LM + V LA AE D + + + A RA + + ++ Sbjct: 423 LMLMLGQTSGVAEKLAAAEAALQSFPDDHQTRNLIGQIAASRAILLLAQYQFASTLAQSQ 482 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 ALE L +S A LG G+ + + ++ +A+ + + I Sbjct: 483 RALEYLAADNVFSLTSAYWTLGFGYLAHGDRAAARQALTKSVSLAQASGSSFIRILATIG 542 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 ++ ++ L A T ++ L EQ L+ + A++ + W +LD AE A Sbjct: 543 LGQLQESENQLYQAAATYQQILALAGEQPLQIIY---EAYLGLARIYYQWNQLDAAERYA 599 Query: 594 RSGIEVLSSYQ--PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 + +++ Y + + C L++ LAR + A ++L +L + + Sbjct: 600 QQSLDLAQQYDRLIDRSIICEIWLVRLQLARRANEQAATKLGQLAQTVRQQNFTQRLPEI 659 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 711 + A A+ + A +L Sbjct: 660 ITTQIGVLLA-------------QAELQAAAELAQTIDSPLIQAKVLLAQANAAAALELL 706 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 + L E ++ + L+L Q G+K+ A R L AL +A G I F+ EG Sbjct: 707 QPLIEQFQAKGWLDQQLHGLILQAVAQQQQGQKAPALRTLQAALAMAEPGGLIRIFIDEG 766 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 + Q LR+LI + + Sbjct: 767 PELKQLLRELIGRGLGNAYARQILAAFGQMPLMPSAQV---------------------A 805 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 PL++RE +VLGLI +G SN+ IA +L ++ T+K H+RN+Y KL V +R AV AQ Sbjct: 806 LIEPLSERELEVLGLIAAGLSNQAIADQLYLSLYTVKAHVRNIYGKLSVNNRTLAVAKAQ 865 Query: 892 QLLKM 896 +L + Sbjct: 866 ELAIL 870 >UniRef50_B8G442 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=3 Tax=Chloroflexus RepID=B8G442_CHLAD Length = 917 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 220/934 (23%), Positives = 368/934 (39%), Gaps = 58/934 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN---- 57 L+ +KL P + R RL L A + R+ LIT+PAGYGKT+L++ W Sbjct: 4 LVRTKLQPPEARPSLLARPRLYEWLRHALHSRVVLITAPAGYGKTSLLAVWIGESGKEWS 63 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 I W +LD DN R +YL+ A+ + A + + + A+L +L Sbjct: 64 QIAWLTLDAADNDLRRLFAYLLEALPHLSPTRRAQLQALLETEAGLDAEQWCAELLNDLV 123 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 E +V DDYH IT+ IH ++ F + H P L++ +R+ P L +A R R QL Sbjct: 124 EIGDATIMVFDDYHTITDNQIHHAIAFLVEHLPPRCRLIIATRSDPPLPLARWRARGQLA 183 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+ S LAFT +EA F + P+E + + + GW L L AL+ R + H Sbjct: 184 ELRSFDLAFTPEEAAAFLLEEMELPLEREQIVALLESTEGWPAGLHLAALALRHHPHQDK 243 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN---- 293 ++G ++ DYL+++V + + FLL+++IL + L V G Sbjct: 244 LVNAIISG--NRYVVDYLIEDVFNQQPFHIQQFLLQTSILDRLCGPLCDAVIGINEREIN 301 Query: 294 -------GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQW-ELAAELPEIHR 345 Q L E+ER LFL +D W+ YH LF + LR+R + + +HR Sbjct: 302 EQSHSSYSQSILTELERNNLFLFPLDTERNWYRYHHLFADVLRERLETGSSPDRIALLHR 361 Query: 346 AAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSL 405 A + A G AI+HAL A + ++ ++ + + L L +P + Sbjct: 362 RAGAWFAAHGMLPLAINHALRAQAFDDVVAMIEPIGLAVVSQVGEATLRRWLPQIPDTAF 421 Query: 406 LENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDT---------MHAEFNALRA 456 ++P+L LL+AWL + ++ + +A AE + + T + E +A+R Sbjct: 422 EQHPRLALLRAWLATTDYQMEDAAYWIAVAERALAGVASGTATSFGPIANLRGELSAVRV 481 Query: 457 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 516 ++A+ G+ D + + AL L R+ LG +G+L R+ + Sbjct: 482 RLAVLRGDNDRVLQEGQQALAWLQTDNQALRMRVAKDLGYAYFAQGDLMRAEQAFSEAIV 541 Query: 517 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF-QLINEQHLEQLPMHEFLVRI 575 + + + + + +G + A +T + ++ P Sbjct: 542 NGFNAGLPYISAMATSDDAYTKALRGSIGAAIQTCRETINHMLRRNRDRASPGIGLPFLT 601 Query: 576 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 635 A L A + + L L + + + ARGD+ A + + Sbjct: 602 LADLHGVRHEFAGALPALAEAESSIKPGNTTSYLCLLIVTARINRARGDVAGALRVVRQA 661 Query: 636 ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 695 L + ++ N GD A L P + A Sbjct: 662 -RFLARQRKIDWVLAVLNGFEAQLALEQGDLVTAEYLLEAQLHPPVEFR--MMPIAAFYA 718 Query: 696 RAQILLGEFEPAEIVLEELNENAR------------SLRLMSDLNRNLLLLNQLYWQAGR 743 R I+ ++E ++A L L + Sbjct: 719 REHIIRAQYEWRLARARAAGDSAELHALAAALAAPTQGETWQMLAPLDAALLRALALLAA 778 Query: 744 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREIN 803 DA +++ AL LA ++ FV GE + L +L LP ++ I Sbjct: 779 GEDATDLIVTALDLATVERIVTPFVQAGEPLRIVLNRLSVRQRLPAYGEYLLSLI----- 833 Query: 804 QHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVA 863 D + + PL+QRE +VL L+ G SN +IA L +A Sbjct: 834 ----------DNDEPLPMSMPVTSAPPTLPEPLSQREIEVLRLMAEGRSNHEIATSLVIA 883 Query: 864 ATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMM 897 +T+K+HI N++ KLGVA R AV ++L + Sbjct: 884 VSTVKSHINNIFNKLGVASRTQAVARGRRLGLIP 917 >UniRef50_C6XP68 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XP68_HIRBI Length = 905 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 193/914 (21%), Positives = 360/914 (39%), Gaps = 43/914 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND--- 58 LI SKL+ P + VVRE+L+ +L RL+LI +PAGYGKT+L+SQW + + Sbjct: 8 LIKSKLAPPSWIGGQVVREKLIKQLDAVFTHRLSLIVAPAGYGKTSLLSQWWNVERNRKS 67 Query: 59 --IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 I W +L+ D A Y+ +A+Q A + +SL A L L Sbjct: 68 CFIAWVTLEAEDADVAMLARYIQSALQIALLDDAGDAAHKSGYNNIPPSSSLSAAL-NLL 126 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + P+ +V DD H P + +R FI+ P + V SR+ P+L A L +Q Sbjct: 127 DRFDRPVVIVFDDLHSAGVPEVELFLRKFIKLAPSHCHFVFASRDQPRLDQATLAAENQF 186 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 E+G +L F+ EA++ I + +I + GW ALQL LS +Q + Sbjct: 187 FELGMGELKFSEDEAEKLLIQNTVQGIGDTDFQKIYNRTEGWPIALQLTFLSLKQGVDLS 246 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 R +L++YL ++VL ++ + + +L + + + ++G Sbjct: 247 QLVDRF--SQPTGNLAEYLSEQVLLSLSPEDEEIVSHTVLLDHLTGEAVNFLCDRQDGWD 304 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L +E +G+FL + YH +F ++LR R + + ++H+ AA + QG Sbjct: 305 VLVRLEGKGVFLMPDSPNRNSYRYHQVFRDYLRSRLERNQSELYTKLHKKAARWYGDQGR 364 Query: 357 PSEAIHHALAAGDALMLRDILLNH-AWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 A+ HA+ A D ++ ++ W L + +L +++ + + L ENP L L Q Sbjct: 365 IGRAVSHAINANDEKLIAALVDEAGGWRLIPIGRIDVLSQAIDHISDEILEENPGLKLGQ 424 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTM-HAEFNALRAQVAINDGNPDEAERL-AK 473 +LM I+ T E + ++ + P + L A+ Sbjct: 425 IYLMIKGGDLTGARECYQEYTTRIEAEILPTGKWNEVKLVGDIISEYENRPVTLDDLIAR 484 Query: 474 LAL-EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 AL + LG G L R+L + + + + + L++ Sbjct: 485 EALIPSVNSDDHIMLGHLNEALGAQYLDGGWLERALGPILEARRHHQALGSLYSDLFTQF 544 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 ++ + QG L A + +A I + + +L + LD+ + Sbjct: 545 LEARVRRGQGRLNEALQILNEAKLKIENSFGARSDLAANCASYLGELAYDQDCLDDVDEL 604 Query: 593 ARSGIEVLSSYQPQQQLQ--CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 + + ++ + A+G L ++ L ++L I+ Sbjct: 605 LEWALPHMEESDGWFEVYTAAYFTSARRFAAKGSLRESKIILEEAKSLARRRGLLQLEIT 664 Query: 651 NANKV---RVIYWQMTGDKAA---AANWLRHTAKPEFANNHFLQGQWRN---IARAQILL 701 + + Y T D A + + A+ + + H+ Q + + Q+L Sbjct: 665 SELCWFDIELNYDTSTTDFTEKANALKVITYAAEMKERSPHYRQVAIIASMCLVKMQLLS 724 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 G+ + A LE L AR + L +L + + A + L +A+ ++ Sbjct: 725 GDAKGALETLEPLRTFAREHGVGRLLIEVDILTSAALEKMDDSMAALKCLDEAVNMSIFQ 784 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 I FV + +L I + ++ + + +R Sbjct: 785 NIIRPFVDL--------------SRFYDLSAEHRFEIGEQSDRFKKQFLQTVSKALSQRR 830 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 LT E ++L + +G SN++IA ++ T+K ++++++KL V+ Sbjct: 831 RRDDA------EGALTSGELEILNYLNNGLSNKEIARLTSISPNTVKFRLKSVFKKLDVS 884 Query: 882 HRQDAVQHAQQLLK 895 R+DAV A++ Sbjct: 885 KRRDAVMIAREKGL 898 >UniRef50_Q1N117 Probable transcriptional regulator n=1 Tax=Bermanella marisrubri RepID=Q1N117_9GAMM Length = 897 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 190/912 (20%), Positives = 367/912 (40%), Gaps = 50/912 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND--- 58 ++ K+ P V R L+ L + + L+ + AGYGK+ + S++ K Sbjct: 19 VLAMKMQLPSLPLAHVKRTSLIQYLD-SQESNVVLVYAAAGYGKSLMFSEYMFSKKHIQE 77 Query: 59 -IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLD +N + RF +YL+A + + + + + ++F + +A Sbjct: 78 SVAWLSLDAKENDERRFLTYLLACLHGVDDQI--FNQALEKLLGGEDCEAVFLNIVDAIA 135 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + ++LV+DD H I N + + + + + PENL L +LSR ++ LR + ++ Sbjct: 136 QLQRKIHLVLDDCHEIRNEKVLDWIETLVLYTPENLRLYLLSRVCLPFSLSKLRHTNGVV 195 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI +LAFT E + +F+ + +E + GW L ++ Q Sbjct: 196 EITENELAFTSDEMQLWFEQAQLVRLNRSEQEQFHSISQGWPVGLTMLKALYDQFEEID- 254 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + + +Y ++ ++ + + A+L+ ++ + ++ Q Sbjct: 255 ------LSRPNTLMQEYFHEQWRPHLSNSQYELCRQIALLKEVSPEYLLAAYQDDAIQDE 308 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L + + + W C HP+ +L+ W+ + +++ A + GF Sbjct: 309 LTNLLNSHKLVMPVAIYQTWVCLHPMLQAYLQ----WQGLESVKTVYQQACDWLHDNGFQ 364 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 A+ AL A D L +L A S+ +++ L E + +P D ++ +P+LV++ +W Sbjct: 365 VAAVEMALKAEDKLKAASLLQQTAESILEDQDIAQLLEWRRQIPDDVIIASPRLVIIFSW 424 Query: 418 LMQSQHRYGEVNTLLARAEH--EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 + + + L+A+ + D + + A+RA +A GN D A LA A Sbjct: 425 SLALALQLDDSERLMAQMARIEGVPGTMTDEISGQLFAIRAYIARCRGNIDNAASLAHQA 484 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 LE+LP F +R V L V + L + + + + AR H + ++ + + Sbjct: 485 LEKLPKRNFVARAVTYFNLSNVCMTQQSLVDARKYNRLSFETARAAGSIHLEMLAIHEHA 544 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQL-PMHEFLVRIRAQLLWAWARLDEAEASAR 594 + +G L A + ++ L + + P + L+ + +L + +A Sbjct: 545 RLEQVKGNLNLAIKLLDEGLHLSHRLDNRMMAPAYGRLLIYKGYMLLLQNQTAQARQLLL 604 Query: 595 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD-WISNAN 653 G+ V + + + Q GD++ A L E + S ++ + Sbjct: 605 KGLGVCKATHDSYVIMAFVLKSQLFRQSGDIEKAFDYLAEAEAQMQRWNIPSFIYMPWLS 664 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW---------RNIARAQILLGEF 704 VR G A + ++ + + L + RA+ + G+ Sbjct: 665 TVRCNLLIDQGKVDVALSNIKDLYQQAELAPYLLTPEHFPALKGLLDIFYVRAKSIAGQH 724 Query: 705 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 764 + A +L++ E+ + + L L+ L +Q G + DA AL +A I Sbjct: 725 KDALRLLDQTLESGKLEQHGFTLLFIYLMRALLRYQLGHEDDALHDFRKALTMAEPDECI 784 Query: 765 SHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 F+ M Q +QL + Q IL+ I A ++ F + L Sbjct: 785 MPFIEYSAGMGQLYQQLPDQYK----HKPFVQAILKNIELTED---ASPNKEFAKMRL-- 835 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 L+QRE VL LI G SN++IA L ++ T+KTH R + KL V R Sbjct: 836 ----------VLSQREMAVLKLIAEGLSNQEIAERLFISLHTVKTHARRINGKLDVKSRT 885 Query: 885 DAVQHAQQLLKM 896 A+ A+++ + Sbjct: 886 QAILKAKEVGIL 897 >UniRef50_B5WTD5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Burkholderia RepID=B5WTD5_9BURK Length = 921 Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 196/911 (21%), Positives = 355/911 (38%), Gaps = 35/911 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 LI +K+ P V R LL +L + L+ +PAG+GKTTL++ W A + Sbjct: 16 LIQTKMMPPRIPAGCVQRPELLRRLDERRPRHVTLVIAPAGFGKTTLLAVWSEAQARKRR 75 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLD D+ ++ +YL+AA+ +A+ + + + + ++ + L +A Sbjct: 76 PVAWLSLDGEDDDPQQLGAYLVAALSRASKDVAWQAQQLLDNDAHTPVRTIISVLLNGIA 135 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + ++LV+DD ++ + + +R+ PENL +++ +R P L + LR D+L Sbjct: 136 AFGRDVFLVLDDVDRLSAKPVLAIVSRLLRYAPENLHVLLGARGEPALSLGGLRSPDKLS 195 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + + L F+ +A+ FFD ++P+ + GW LQL +L N Sbjct: 196 RVNADDLRFSLDDAQAFFDRTGNTPLNRNSVELLNTATEGWVAGLQLASLGL--NRVDDV 253 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG-EENGQM 296 + + + YL D V ++ FL ++IL + L V G E + Sbjct: 254 AALASHLAGSRFGIDRYLSDTVFAHLPPHMLTFLQYTSILERLTATLCDEVMGGEADSGE 313 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 +L+ +ER +F++ +D+T +W+ YH L + LR+R + ++P +HR A+ + Sbjct: 314 KLDWLERHNVFIRPLDETQDWYRYHALLSDALRRRLVRQTPRQVPLLHRRASLWFARARL 373 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 EA+ HALAAGD N A + + +L ++ LP D + P+L L +A Sbjct: 374 WPEAVRHALAAGDVDQAAQWAENCAMEMLQRGDPFMLPGWIRKLPPDVIAGRPRLRLAKA 433 Query: 417 WLMQSQHRYGEVNTLL-------ARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 W + + + R + + + ++ AE NA+RA +A + + A Sbjct: 434 WGLAMSLETARASQEIGAIVDEFERMSRDDRSVADEVAWAEINAIRALIACVSDDSEHAL 493 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT-RSLALMQQTEQMARQHDVWHYAL 528 L + P + R S L +G+ + S + +Q+ + Sbjct: 494 ELGRAIEASTAPAAPWVRYYGQSAEIFGLMYRGQFSYISRVWRARVDQVGISRKPNSADM 553 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 G L A E A + ++ E + A + + L + Sbjct: 554 LRDAVYGIAALVHGELADARRVMEVALRYSEDKLGEWSAGAAAVAGCLASIHYECNELSK 613 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLI-QCSLARGDLDNARSQLNRLENLLGNGKYHSD 647 + + P L + + G A + L + ++ Sbjct: 614 VRKLLEGRMTIALETSPLAALMRFMLTASRVLWRDGKKGPALAVLEDGRQVAITRRWLRL 673 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHT----AKPEFANNHFLQGQWRNI----ARAQI 699 ++ + V G A W + AR + Sbjct: 674 KLA-CDAETVRQLLADGRLVEARQIADELSASVPMMCEGRRGSAMETWASYCVLEARVLL 732 Query: 700 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 759 E A L ++ +L LLL ++ +G A L +AL++ Sbjct: 733 AENAAEDAVGFLTRSLDDLVALGWRYAEAVVSLLLALVHEHSGASDKAFSALENALRIGC 792 Query: 760 RTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE 819 G IS FV EG M L + + I + + FDE Sbjct: 793 AMGLISSFVDEGPPMRALLERFRRTP----------SEISTAHAAYIGTLLSAFDEVEKM 842 Query: 820 RLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 + I L+ RE ++LG + G SN++I L++A T+K H++N+++KL Sbjct: 843 PSPSSSGADTKIAPGTLSARELEILGYVARGMSNKEIGRSLKLAPETVKWHMKNVFEKLN 902 Query: 880 VAHRQDAVQHA 890 V R +AVQ A Sbjct: 903 VNSRFEAVQSA 913 >UniRef50_A9B3X7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B3X7_HERA2 Length = 877 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 208/903 (23%), Positives = 357/903 (39%), Gaps = 40/903 (4%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 +++ +KL+ P V R+ +L +L+ R++LIT+ AG GKTTL+S A + + Sbjct: 7 LVLLTKLAAPQIPSTLVERQHVLERLT--CRGRVSLITASAGSGKTTLLSSLANARQRVA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL-AEW 119 W +LD DN RFA YLI A+Q + Q ++ ++ L E+ Sbjct: 65 WLTLDSNDNDAIRFARYLIVALQTLEPTLGRNAMALLNGLQQPAIEAVLTLLINEISVAQ 124 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 +P+ LV+DDYH I V+H ++ + I P L L++ SRN+P L + R + L E+ Sbjct: 125 PAPMLLVLDDYHWIDAQVVHRALAWLIDQLPAQLHLIIASRNVPPLPLGRWRGKGYLTEL 184 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L F E Q L + + + + GW +QL ALSA+ + Sbjct: 185 DASVLQFNSAETAQLLAQTLGDLPDQSTIDWLTERTEGWVAGIQLAALSAKDRANVQQ-- 242 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG--EENGQMR 297 + ++ DYL +EVLD +D AT FLL +++ + AL ++ G Sbjct: 243 ILSGFSGSHRYIFDYLAEEVLDQLDPATLEFLLATSVAERLTGALCDQLLDWQPGTGAQM 302 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L ++ LFL +DD W+ YH LF FLR R Q E + A+ A Sbjct: 303 LAQLADAQLFLVALDDERRWYRYHHLFAEFLRFRLQQLDPQAPAEFLQRASAWHAANNDL 362 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 + AI+++LAA D +++ E + L LP L ++ L L+ AW Sbjct: 363 NSAINYSLAANDHQQAANLIAQFGRDALMRGEALSVRSWLARLPAIQLSQSSHLALIAAW 422 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMH---AEFNALRAQVAINDGNPDEAERLAKL 474 + L +A ++ + + AE + A + N + + + ++ Sbjct: 423 SQLLTVDILGIEEHLQQARAHLEALPQAEQARANAEIATIEAVLLRFGDNIEHSMQHSQA 482 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 ALE + R + L G LT ++A + ++ L ++ Sbjct: 483 ALELVEHDDLVLRGILLGNLTVSARLTGNLTIAVAAASDAVAINQRSGNTFAMLLAIADL 542 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 +I QG L+ A T + +L +E+ Q+P + ++ + W +L+EA+ A Sbjct: 543 GQIQAQQGHLRKAAATYRRGIELASERGWHQVPALGLIHVGLGEVCYEWNQLEEAQIHAE 602 Query: 595 SGIEVLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 I + + + + A + ++++ + + +I+ Sbjct: 603 QAIAIAQINGYLDIATDGYRLRARVEHANNERRSSQASTEQALHFAQRNNV-GRFINEVQ 661 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 + + GD A W + K + AR I E A + + Sbjct: 662 ASQARMALILGDVATVRRWAQTVQKTTW--QWQQVSAANTYARWLIANNEPAQALQLAQP 719 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 L E + LL L Y AQ L AL ++ + G + F+ G Sbjct: 720 LLEQTLKFG--GNRLEWLLTLALAYAAQHNLKPAQTQLEQALAISEQEGALRTFIDAGAG 777 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 +AQ LR+ + + Sbjct: 778 LAQLLREGTSYAAQRAAIVAAMLQQSSTSSAA------------------------QSLN 813 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 PL++RE +VL L+ G+SN +IA L +A T+K H+ NL KL R +AV A+ Sbjct: 814 EPLSEREIEVLKLLALGHSNAEIAERLVIAIGTVKRHVNNLLGKLNARSRTEAVAIARDE 873 Query: 894 LKM 896 + Sbjct: 874 GLL 876 >UniRef50_Q0K1J2 Transcriptional regulator, LuxR-family n=1 Tax=Ralstonia eutropha H16 RepID=Q0K1J2_RALEH Length = 924 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 215/904 (23%), Positives = 370/904 (40%), Gaps = 33/904 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 LI +KL+ P H + RER + L +L ++ +PAG+GKT+L+S+W A Sbjct: 19 LILTKLAPPR-TRHYIHRERSIGLLRPGMERKLTVLVAPAGFGKTSLLSEWKKVLAQEGC 77 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 +GW S+D D+ +F +YL+AA ++A + A ++FA+L + Sbjct: 78 AVGWLSIDRDDDDLFQFGAYLLAAAREACTQAGEPIPCGLKPDPLAPADTMFAELLNAVL 137 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + LV+DD+ + +P IHE++ +R+ PENL L+V R P ++ R QLL Sbjct: 138 ALPRQMVLVLDDFDRLASPAIHEAVFRLLRYAPENLHLLVAGRGEPGFPLSYFEARGQLL 197 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 ++ ++ L F EA+ FF + AA+ + GWA LQL + Sbjct: 198 KLDAEALRFDSAEAQAFFSAVSGHALSAAQIEVLLRATEGWAAGLQLATFALSATDKP-- 255 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + YL + V +V + FLL++++L M+ L VTG Sbjct: 256 DVFAERLPFARRSVEAYLNENVFVHVPEPLQTFLLQTSVLDRMSVPLCDAVTGSSESHAT 315 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 E + + LF++ +D G+W+ YH LF +LR+R E E+ E+HR A+E + AQ Sbjct: 316 FEWLMARNLFVRPLDAEGQWYRYHALFAEYLRKRLVRERPHEVAELHRRASEWFAAQSLW 375 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 EA+ HALAAGD + A +L S++ + + LP +++ +L L QAW Sbjct: 376 QEAVRHALAAGDVDRAAGWVEQCAMTLVEASDVRTVLSWVAKLPPEAVHGRLRLRLAQAW 435 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDT---MHAEFNALRAQVAINDGNPDEAERLAKL 474 + + +L E +I R + E A+ A +A + + + + Sbjct: 436 ALALTMQTVAAKAVLQAVEDDIGHGRLPLTEVVRVELQAVTALIAGLSDESELSLEMGRK 495 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 L P + + + L L + + ++ Sbjct: 496 VLALGPDTGSWEEGIGLTTQIFGLSYAAGFDEVERLRRTLTLNTGADTPIYAKVYRQSMV 555 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 LF +G L A +T E + N + Q V A + + W LD Sbjct: 556 GLSLFVEGRLGEAVQTLEDVLRESNARAGRQSAASVLPVGYLAAIHYEWNDLDRVAELLD 615 Query: 595 SGIE-VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 +E L S + L + L G D A + E + + ++ Sbjct: 616 ERLEMALQSCSLGPLIGFCVTLARLRLLAGKQDEAYRIVEDAEAVARSRQWL-RMQVACK 674 Query: 654 KVRVIYWQMTGDKAAAANWLRHTA------KPEFANNHFLQGQWRNIARAQILLGEFEPA 707 + GD AA ++ Q +A ++L+G PA Sbjct: 675 AEAIRISIGAGDIGRAARIGHDLDGLVGQKPATLRGSYLETWQRFQVAHCRLLVGRGRPA 734 Query: 708 EIV--LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 V L+ + R+ + + ++L AG++++A + + AL G Sbjct: 735 LAVPILQGVQAEVRAAGMQYLSAQISVMLAVALHSAGQRAEAVQAMRAALTYGQANGLQR 794 Query: 766 HFVIEGEAMAQQLRQL-IQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 F+ G A + L L +Q + L E+E +R+ + A D+ Sbjct: 795 VFLDAGPAAREILDALCLQQDRLAEVEPWYVRRLCAGFDAPASEPDAADDQA-------- 846 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 E + S L+ RE ++L + G SN++IA + VA T+K H++N+++KL V R Sbjct: 847 ----EPVAASRLSAREVEILDYVARGLSNKEIARAIRVAPETVKWHLKNIFEKLKVNSRI 902 Query: 885 DAVQ 888 AV+ Sbjct: 903 QAVR 906 >UniRef50_Q396V4 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Burkholderia RepID=Q396V4_BURS3 Length = 913 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 219/909 (24%), Positives = 373/909 (41%), Gaps = 31/909 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKN 57 L+ +K+ P V R RL+ A + RL +I +PAG+GKT+L W Sbjct: 15 LVATKVLPPRLPAGLVDRPRLVELAETAESKRLTVIQAPAGFGKTSLARLWLDCLRTRGA 74 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 GW SLD GD++ RF Y A+QQA ++ ++ + L EL Sbjct: 75 LAGWLSLDVGDDEPARFFHYFAQALQQACGDIGIAA-GLSADASLLPPDAIVSTLINELV 133 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + LYL IDDYHLI +P IH + +FI H P + +V+ +R P L +A LR ++L+ Sbjct: 134 DVDDELYLFIDDYHLIGSPAIHAGVAYFIDHAPSQVHVVICTRTEPPLPLARLRAHNELM 193 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI + +L F+ E + F + A + GWA AL++ A ++ H Sbjct: 194 EIDAAELRFSFDETQSFVRRECPGTLADATVKSLFVSTEGWAAALRIAASVLKRGGAPGH 253 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 A R+ + + YL + +L+ + F+L++++L ++ L VTG + Sbjct: 254 DGAARIPSGASRPFAAYL-EGMLERLPADLVDFMLRTSVLDRLSAPLCEAVTGVATSRPM 312 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L+ I + L LQ +D GEWF YHPL +LRQR + +P++HR A+ + +Q Sbjct: 313 LDTIVARQLLLQPLDQDGEWFRYHPLMAEYLRQRLATQCPDAIPDLHRRASRWYASQALW 372 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 ++A+ HALAAG ++ + A +L +L L + P D + ++ L AW Sbjct: 373 TDAVTHALAAGARDEAVALMAHCAMTLVMRGDLLTLLGWQRQFPADLMQGQVRVSLAIAW 432 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDT-MHAEFNALRAQVAINDGNPDEAERLAKLAL 476 M R+ + +L E + + E A+R+ +A +P A LA+ L Sbjct: 433 GMALAMRFDDALAMLDAIERTPGAGVDPADIRHECQAVRSVIAALQDDPRRAFALAQPCL 492 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 + P ++ V ++V+ G L +L Q + +++ L Sbjct: 493 DR-PSTDTWTTNVVSNVVRFGHWKAGNL-EALYATPWIPQSGDDRRLVFASVYRLSLLGH 550 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 Q + A +A QL Q + Q+ + RLDEA A Sbjct: 551 AEMQQMHFELAERYFSEAMQLGTRHCGPQSISVAICAPMLGQIRYEQGRLDEARALVIDL 610 Query: 597 IEVLSSYQPQQQLQ-CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 + V+ L +LI+ ++AR + +A + L+R + L + + + Sbjct: 611 MPVIDVAVLLDSLLTAYKLLIRIAIARAEFPHAYALLDRAQALA-HARGWPRLTAAVLVE 669 Query: 656 RVIYWQMTGDKAAAAN------WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE--PA 707 R G AA L + + +R + A + + A Sbjct: 670 RTRLHIAEGRLTEAAACVMQFDRLAGGDRGAQVDTSLEIDTYRALVTACVATARNDLQGA 729 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 L++ A R +L + + G ++ A + L++A G Sbjct: 730 VAALDDGLRCASLRHSDYLALRLKTVLALVQLRGGERAAALDTFAEVLEVAEPAGIYRSI 789 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 V +G + + L+ + + R I R ++ + Sbjct: 790 VDQGPEIGELLQAMRDQARASSQTRDRLAYIERLLDGCRAQYQQDAQPARAAQR------ 843 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 L+ RE ++ LI G SN++IA L +A T+K+HI++L+ KL V R AV Sbjct: 844 ------DMLSVRERDIVELIAHGQSNKEIARTLGIAPETVKSHIKSLFMKLEVDKRARAV 897 Query: 888 QHAQQLLKM 896 AQ L + Sbjct: 898 AVAQSLGLL 906 >UniRef50_C1DE28 Transcriptional regulatory protein AcoK, LuxR family n=1 Tax=Azotobacter vinelandii DJ RepID=C1DE28_AZOVD Length = 900 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 222/905 (24%), Positives = 359/905 (39%), Gaps = 36/905 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KN 57 LI +K P +VR RL+A+L LAL+ + AG+GKTTL++QW Sbjct: 23 LIATKFVPPRSPGLLLVRPRLMARLEPLAERSLALVCAGAGFGKTTLLAQWRGQLQEHGQ 82 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLDEGD+ E F YL+ A+ G +A S+ +F L + Sbjct: 83 AVAWLSLDEGDDVPEYFCHYLLDALLPLHPGLGWRLGFLAA--GLPSIDLVFGHLINAVQ 140 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 +PLYL++DDYH I NP IH + + + H P N +++ SR+LP L ++ LR R+QL+ Sbjct: 141 AVEAPLYLIVDDYHAIRNPAIHRAFAYLLEHAPANFHVLLGSRSLPTLPLSRLRSRNQLI 200 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+ + L F EA+ +F + + A++ R+ + GW T +Q+ LS + A Sbjct: 201 EVDTNDLRFNLCEARHYFADSAALTLSNAQTQRLLELTEGWITGMQMATLSPSIKDNPAQ 260 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + YL D V + + A FL++++IL L VTG +G Sbjct: 261 AIDS--LSHGGRLVGRYLEDVVFEPLPAAVDDFLMRTSILDRFCAELCDAVTGRHDGHAM 318 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L+ IER LF+ +DD G+WF YH LF L+ R + ++ +H A + Q Sbjct: 319 LDWIERHNLFVAALDDHGQWFRYHHLFAETLQARLRRRTDLDIAALHERAGNWFAGQSLW 378 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 +EA HALAAG A SL ++ L L+ LP + L L AW Sbjct: 379 AEATRHALAAGKVESAPGRAGLGAQSLAERGDIDTLLGWLQQLPITADEHRISLQLNLAW 438 Query: 418 LMQSQHRYGEVNTLLARAEHEIK-DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 + + R+ E LL + + +A+ A N LA+ L Sbjct: 439 ALAHRFRFDESRRLLGELRRWFAVHPARRDLRVKLDAVAAICEAFAENVQTGIALAEPLL 498 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 ++P G + + +VL G+ + A+ + T + + + Sbjct: 499 AQIPCGDSWVDGLVCNVLSYCHLVLGQHEEAQAVQRHTLYPGAPTENLFVTVHRAFILGQ 558 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR-S 595 QG L+TA +A + + Q L A+L + + +A R Sbjct: 559 SHLRQGDLRTAEACFLQAMESADRLTGPQSSGSATLAASLAELAYEHGDWERLDALVRQR 618 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 G+++ L L + +LA D AR L + + ++ + + Sbjct: 619 GLQIDRVAPLDGVLSVYRALSRRALAEDDGVQARLLLQHGQEIAAQRRW-NRLQAALLAE 677 Query: 656 RVIYWQMTGDKAAAANWLRHTA---KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 712 +V D A A + LR E AR + G A L Sbjct: 678 QVRLQLQRDDLAGAEHMLRRIEMLKSDEGTIPGCRHYARIARARLLLAQGLGLAAADCLA 737 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 + + + + R L WQ + A LL AL+L R + G Sbjct: 738 GVVAEFEARGQLLEAARLRPLWAIALWQGDERDAAVATLLPALQLGQRENLLCSLTDAGR 797 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 A+ L + + + + Sbjct: 798 ALLPLLSRCASAEAGSGELAGYLAILRERLGGDDCAE----------------------P 835 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 L++RE Q L L+ +G SN++IA L+++ T+K H++NLY KL V R A+ A++ Sbjct: 836 PFSLSERESQTLRLVAAGQSNKEIARTLDISVETVKWHLKNLYGKLQVTSRTRAMSRARE 895 Query: 893 LLKMM 897 L + Sbjct: 896 LSLLE 900 >UniRef50_Q2SM19 ATP-dependent transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SM19_HAHCH Length = 902 Score = 406 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 201/925 (21%), Positives = 359/925 (38%), Gaps = 54/925 (5%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DI 59 M++ SKL P + R+ L +L G + L+++P G+GKTT ++Q+ + Sbjct: 1 MILTSKLQPPQLPTQLLPRDALQHRLGGILKKPVTLVSAPPGFGKTTALAQFLHREQLPY 60 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYA--SLTSLFAQLFIELA 117 WY+LDE DN F Y+ A + + A ++ SL +L Sbjct: 61 LWYALDEQDNVPGIFWRYVCAGFESVFPKIGPRSARILSVDDDALNAVRSLLDELTQLGR 120 Query: 118 EWHSP--LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQ 175 W P + + IDD H +++P++ + + +F+ H P L + ++SR +P L I +VRD Sbjct: 121 TWRRPESMLMAIDDVHYLSDPILLQQLDYFLDHLPPYLHVALISRTIPPLHIPRRQVRDS 180 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 LL + ++ L T E +F RL +EAAE ++ GW ALQL L+ + + Sbjct: 181 LLLLDAEHLRLTEIETPKFLQTRLGLNLEAAEMKKLHRLTDGWIGALQLYGLNLQSQPAN 240 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 +++ YL +E D + LL A++ N L ++ + Sbjct: 241 P----LLNLNAPPENVAAYLAEECFQQQDDWVQAGLLNLALVPRFNLQLANQLCPGADAA 296 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 + LE + ++ LFL G W+ +H L ++L+ R Q EL +H AA+ + QG Sbjct: 297 LLLETLLKRQLFLSETSADGAWYRFHDLLRDWLQLRNQDRPPGELQILHGQAAQWYAEQG 356 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 + EA+ AGD + L+ L +P + + P+L+ + Sbjct: 357 YFLEAMEQWTLAGDWEQTALCAGRALPEILRMGHYPLVARLLAKIPPEQMRRYPKLLAQR 416 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIRE-----------------------DTMHAEFN 452 A+L ++ R+ EV+ L AE + + E + Sbjct: 417 AFLQLTRMRFDEVDADLDLAERYVDAMLEESGNPQTLTRLKRQYGLQESESIRELKCMII 476 Query: 453 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQ 512 R+ +A P+ A + + + LP LG + +G L + L+ Sbjct: 477 LGRSHIARMTDKPELATEQLEQSRDFLPEQDSPFTAWLFQGLGADEYIRGSLHAAQYLLM 536 Query: 513 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 572 + + +R+++ + +L +L QG LQ A E ++ + +H+ LP L Sbjct: 537 RALRSSRKYEEGFCLIATLSWLIPVLLQQGKLQFAKELLDEQQSWLESRHMHCLPNWGNL 596 Query: 573 VRIRAQLLWAWARLDEAEASARSG-IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ 631 +R +L + A ++ LA+ D A Sbjct: 597 HYLRLLILLELEQPAAAAQELERLWDCADERVMAVDRVYHKWGEFALRLAQQDYQQAEKA 656 Query: 632 LNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 690 L++L+ + + + ++V+ ++G+ A W N Q Sbjct: 657 LHQLDAYFQQHFTQWNFVVPSPATLKVLLDALSGNPFPLAQWAAAYDTKAPIVNLQRQTI 716 Query: 691 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 750 + A+I + + +L E + + L+L R S A+ Sbjct: 717 ELMM-YARIKIYQQADELDLLLERLPLIQKAGNLYFSINLLVLCCLNELAQARPSSAREF 775 Query: 751 LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKF 810 L A+ A G F E + L + + + Sbjct: 776 LTQAVNAAAPLGVRRPFREEITFLQPLLMDMARRGQATT----------------FISEL 819 Query: 811 AHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTH 870 + + NH P L+QRE +L + +G SNE+IA L +AA+T+KTH Sbjct: 820 SVYSAPQTRPQRNHSNSP---LMEELSQRETTILNHLSAGRSNEEIAVALNIAASTVKTH 876 Query: 871 IRNLYQKLGVAHRQDAVQHAQQLLK 895 +RN+Y K GV R A+ A++ Sbjct: 877 LRNIYAKFGVRRRTQALAIAREKGL 901 >UniRef50_Q2JAS8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Frankineae RepID=Q2JAS8_FRASC Length = 914 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 214/904 (23%), Positives = 359/904 (39%), Gaps = 19/904 (2%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKND 58 + +K P V R+RLL L RLALI +PAG+GKTTL QW A Sbjct: 11 VSTKFQAPTYDTQLVGRDRLLDVLRDGRARRLALIHAPAGFGKTTLAVQWQRVLRAEGVP 70 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 + W SLD DN F S+LI AV++ + + + + +L +LAE Sbjct: 71 VAWLSLDRDDNDAVWFLSHLIEAVRRVEPTLGGDLVEVLEGHSDDAQRYVLTELVNQLAE 130 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 PL +V+DD+HLI P ++ F + P NL L+V SR + L+VR+Q+ E Sbjct: 131 HRRPLAIVLDDWHLIDAPQAVAALEFLLEAGPANLHLIVTSRTRSP-AVGRLKVRNQVTE 189 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I + QL F H+E+ F +++ + R+ GW ALQL LS R + + Sbjct: 190 IDATQLRFDHRESAAFLLELNELDLDSTDVHRLWSSTDGWVAALQLATLSLRDSADPSAL 249 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 R L DYL + V D + FLL +++ + L V+G+ GQ L Sbjct: 250 I--RGFSGRHHSLGDYLAENVFDALPADLLDFLLTTSVCDRLCGDLAAAVSGQRRGQALL 307 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 EE+ER+ LFL+ +DD EWF YH LF +LR+R + + A + +HR A+ + G Sbjct: 308 EELERRDLFLRPLDDNREWFRYHHLFVGYLRRRLERDHADRVVTLHRTASAWFADHGLLG 367 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 EA+ HALAAG+ D++ A L HS +++L + LP L +L + AW Sbjct: 368 EAVTHALAAGNDAGAVDLVERQAMHLVEHSRMAVLLSLVNKLPSALLPGRSRLQIAIAWA 427 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIRED----TMHAEFNALRAQVAINDGNPDEAERLAKL 474 R L + + E + ++A + + A L Sbjct: 428 NCLLQRAQPAQVALDHVRAALTPDDTSDTGKDILGEADVVQACIDVYGDRIYRAADLIAP 487 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 + + + V++++ V + A + ++ Sbjct: 488 YIAKNSGYRPWLVAVSSNIRTFVDIHTFAYDTAQARQRWANAFHDTTRGPFAGVYGRCFA 547 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 FAQ L TA +A L E + + +L + +D AE Sbjct: 548 GLAAFAQLDLVTAERLYREAVALAREAAGPRSHAARLAGALLGRLYYERGDIDAAERLLE 607 Query: 595 SGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 E+ S + + L + RG++++ L+ + + + Sbjct: 608 ECHELGAESGVADLMIATYSTLARIKTLRGEIEDVWHLLDEGSE-AASQLVLPRLSAAVD 666 Query: 654 KVRVIYWQMTGDKAAAANWLRH-----TAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 R+ GD A N L + Q AR +++ A Sbjct: 667 HERLRLHLARGDLGRAQNVLARQSDDVARGGDGIAMATRHYQLAMRARVMAAQADYDGAL 726 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 +L ++++ + S+ + L ++ G A R L+ A+ R G + Sbjct: 727 RLLSQMHQESSSVAWRYAETATRIDLAVVHSLTGDTDTALRTLVPAVVAGARCGLVRTVT 786 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 G + + + +L + + + E +++ P Sbjct: 787 DAGPELLKIIGELRDASRCRR-WPVELPTVPSDYLSKLLATAHADAERAAIPIIDRPAER 845 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 PL RE +L L+ G SN++IA L + T+K +++++Y KLGVA R ++V Sbjct: 846 NPAPEEPLNAREIDILRLLDRGLSNKEIARNLGLTINTVKWYLKSIYTKLGVARRGESVS 905 Query: 889 HAQQ 892 A++ Sbjct: 906 EARR 909 >UniRef50_A9AZG3 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AZG3_HERA2 Length = 860 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 211/900 (23%), Positives = 340/900 (37%), Gaps = 47/900 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA--GKNDI 59 LI +KL P + V R RL +L N RL LI++PAG+GKTTL+S W + Sbjct: 4 LIQTKLVVPPPRERVVKRSRLYQRLDAGRNQRLTLISAPAGFGKTTLVSAWLHITKQQHC 63 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W +L+ DN RFA YL Q + + L ++ L +L E Sbjct: 64 VWLTLNSHDNDPLRFAQYLQQGFQAQLPQFNWQWLELLG---HQVLINVVTTLINQLHEQ 120 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 LV+DDY +I +PVIHE++ I H P L +V+ R P L +A R R+ L + Sbjct: 121 TEHWVLVLDDYQMIDHPVIHEALTMLIEHCPPQLHIVLTCRQQPALPLARWRARNWLTTV 180 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 G L FT E +F + + S++ +GW LQL AL+ + H Sbjct: 181 GVADLRFTDYEGGEFLRDVMHVRLNQQIESQVLHQSAGWIAGLQLAALALSEAPSPEH-G 239 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE-ENGQMRL 298 R L AS +S YL++EV + + LL A L N +L + + E G +L Sbjct: 240 LRALNSGQASDISVYLLEEVFQQQPTSIQQALLALAPLDRFNRSLADFMHQQCELGPNQL 299 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 ++I + LF+ +D EW+ HPLF +FL Q + AAE Q + Sbjct: 300 DQIIERQLFIGALD--QEWWQLHPLFRDFLLQHANLIDPELRNRVLAIAAEWCRDQHYIH 357 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 +A+H+AL A + IL + L L LP + P+L + Q W+ Sbjct: 358 DAMHYALQAQAHQLAAAILTPWVGQFVREAAFYTLRPWLDQLPIHIIWNEPRLCIAQMWI 417 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 + + + L R + + + AE AL A A ++A + A Sbjct: 418 LITLRNGEGIQGYLERISQLVGSNEPNPLAAEALALGALAATMTSKLEQATLWGEQAKRL 477 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 + V T L V H +G+ ++ QQTE + + + + + ++ +L Sbjct: 478 NTSNDPTIQGVMTFCLAVVAHFQGDAQQAEMFYQQTETLGQTINSRFLSTVGAVNRAGLL 537 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 G A + + + P + + A++ +L EA A+ + Sbjct: 538 HDVGQFSRAEQICLSLIEQAQALPAPR-PFMAGMHWMLARIYHQRHQLPEALAAVEQSLN 596 Query: 599 VLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 +Q A + ++ D A L +LE + R Sbjct: 597 NSKIMDNRQMWCVAQAQRVAILQSQNDYPQALHCLQQLEEYAIGHDNAK-IRLIIQQTRC 655 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 + D A A WL N+ + + + + A +L + Sbjct: 656 LLAIEQHDLAQATQWLALINADPEDLNNPINQWLGGL--LALRQAALDQASSLLNQALTT 713 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 A + + L L + + G+ A L AL +A I + + Sbjct: 714 AERINFVPLLVSIHATLAMVLARQGQLPKALTELQHALTIAEPELIIQPLLDLQAGLIPL 773 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLT 837 L+QL + L H L +T Sbjct: 774 LQQLPSSPLVLRLLHHNRLETLDLA---------------------------------IT 800 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMM 897 RE ++L + +G N IA L +A +T+K HI NLY KL V +R A+ A++ + Sbjct: 801 PREHEILRYLAAGLGNRAIAEALVIAESTLKRHISNLYLKLDVHNRTAAIVKAREQGLID 860 >UniRef50_B1KGF0 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KGF0_SHEWM Length = 896 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 184/910 (20%), Positives = 353/910 (38%), Gaps = 51/910 (5%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-----AGKN 57 + K P + R RLL LS A L SPAGYGK+TL+SQ+ G Sbjct: 10 LLQKFKPPQQQVKLSQRTRLLKLLSQAEAKSLITAVSPAGYGKSTLLSQYVEMLNQQGNA 69 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W ++D DN+ +F + A+ + S F + L Sbjct: 70 QVIWIAIDPSDNEPNKFFNIFSHALVHHNIADKQLINRSNSISANTDYDSFFIDIVGILH 129 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 E P+YL IDD+H +++ VI +++ P+ L L++ SR P+L IANL Q+ Sbjct: 130 EVKHPIYLFIDDFHFLSDKVILHFFNQILQYAPQQLQLIISSRIQPRLEIANLLASGQMQ 189 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + + + EA Q + + +E + D GW A+QLIA+ +Q+ A Sbjct: 190 MLQPEHFKLSIDEAFQLYSDQF----SQSEITAFHDKTEGWVVAMQLIAIFHQQHPELA- 244 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 L + L Y+ +++ +D +HFLL +++L + + V +N Sbjct: 245 --LTSLLNQSIDILDLYMSEQIYHKLDANVQHFLLHTSLLDRFDPLIANYVCEIDNSTQL 302 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAEL-PEIHRAAAESWMAQGF 356 + +I + +D +F YH LF +FL+QR E+ + E+ AA+ + + Sbjct: 303 MSQIIPFSSLVIPIDSQQGFFRYHHLFADFLKQRLLQEVGEQTCRELRCKAAKYYANNDY 362 Query: 357 PSEAIHHALAAGDALMLRDILLNH-AWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 EA++ + A ++ + W L + +E L + +P L L+Q Sbjct: 363 FEEAVNQYIRANHIESAIALIASAGGWELILTRGIGYVESLLSQFNRTQITNSPTLGLIQ 422 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNA-------LRAQVAINDGNPDEA 468 +L + + A K+ ++ + + + + ++ G + Sbjct: 423 CYLYLKLGEVNQASNSYELAYTLFKEYQQQDKPSSSRSRDFSIIKMLIDLYLDRGTDNRL 482 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 LE L R V + LG + + G + + + Q + + W Sbjct: 483 INTLTELLETLEESDHLGRGVVLAGLGLIHNQLGRFEEAHSAALTSHQQMQLANCWVGIN 542 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 +++ Q + L +G L A E ++A ++ E + ++A + + ++++ Sbjct: 543 YNIFHQGQSLAYRGRLNEALELFKRASKMAKEHLGLDSGLQSMASCLKADIHYQVYQIEK 602 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQ--CSLARGDLDNARSQLNRLENLLGNGKYHS 646 AE SGI+VL S + ++ + ++AR D + + L R L+ + Sbjct: 603 AEELLASGIKVLESKDCWHDIYAVSFKLAINIAIARDDHNLCQHYLQRG-YLVAQIRQLE 661 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR-----NIARAQILL 701 + + + + + IA + Sbjct: 662 RLEKLLDVLSLKVTDKFCHLDKFNQLNSQIIRENYWETPQPMWFVISEYYYVIANHYLSR 721 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 A ++L+ A D + L + + G + A R++ L+LA++ Sbjct: 722 NMSNQALSYSQKLSLLALENNQKIDQVKALGIQCLSQFSTGNEKKAFRLVTQMLELASQV 781 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 G F + L +L + ++ + + L Sbjct: 782 GCKQVFFELPNHIEALLLKLNLHSDE--------------------NQLSSEGNRLLTWL 821 Query: 822 LNHPEVPELIRTSP--LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 ++ + + +P L+ RE Q+ L+ G++N+QI+ L ++ T+K H++NL+QKLG Sbjct: 822 ISELKKSHQAQNNPWHLSSREQQICPLLSQGFTNKQISTTLGISENTVKFHLKNLFQKLG 881 Query: 880 VAHRQDAVQH 889 V +RQ AV Sbjct: 882 VINRQQAVLA 891 >UniRef50_A3I8R1 Probable transcriptional regulator, luxR family protein n=1 Tax=Bacillus sp. B14905 RepID=A3I8R1_9BACI Length = 830 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 176/896 (19%), Positives = 347/896 (38%), Gaps = 83/896 (9%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIG 60 L+ SK++ P + R +L + +L ++ +PAGYGKT++++ W K Sbjct: 5 LLSSKITMPHHSPTLIERTQLFDLFDQHIHVKLTILRAPAGYGKTSILTSWLKNKKETTA 64 Query: 61 WYSLDEGDNQQERFASYLIAAVQQAT-NGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLD DN R+ +Y++ A+ +++ + I + + A+L L E+ Sbjct: 65 WVSLDAADNDPIRYWTYILHAIARSSKSEIDQILAPLLNSQDPATLEFFIYSLLEEMNAI 124 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 P+ +V+DDYH+I NPVIH+ M F+ + P + + + SR++P L IA RV+ + EI Sbjct: 125 QQPISIVLDDYHVIENPVIHQLMTQFVEYLPSHAHIYMSSRSVPALPIAKWRVKQWIHEI 184 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 S L FT QE K+FF C+ + + I D GW L L + + + + ++ Sbjct: 185 HSGHLRFTLQEVKRFFSCKHLPALNHQQLQAILDKTEGWVAGLLLTSFAHDPDIEALEEA 244 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A+ +S++L E++ N+ T+ FLL++++L+ ++ A+ ++T + N +LE Sbjct: 245 AQ-------PFISEFLWQEIIHNLPSETQQFLLRTSLLQELDPAICDQLTKQTNSLEQLE 297 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESWMAQGFPS 358 +E +GLF R+ F YH L L + ++ + ++ QG Sbjct: 298 HLEAKGLFTIRLQSKQPIFRYHHLLAEALHMELTRQFSKQDIRNLVLETSQFIYDQGDYI 357 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 AI AL G + + +H LF + + L L D + +++++ Sbjct: 358 SAIELALKHGQYDLATPWMTDHLVQLFLSGQTATFMRWLHQLRRDQYKVSYEMLVIGFLT 417 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 S ++L+ E +L + +E+ Sbjct: 418 SISTTEVEAASSLMEELE-------------------------------LRQLTEQWMEQ 446 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI-----Q 533 + V G+L +M++ W + Sbjct: 447 EEHAAMTYIYESAKAFAIVA-AGGDLQLVEQIMRKQLAKGHIPSRWDHVPIPYNSFEYKL 505 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 + ++G LQT + +L E L+ + F + A+ L+ + Sbjct: 506 LRTSIGSKGKLQTMEQ-GTVISELFRETSLQTANVTAFSYGVAAESLYERNLIPFTHKEI 564 Query: 594 RSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 +++ Q + + + + + + +A + L +L + W ++ Sbjct: 565 EMALKLGHQLQDPGLCIPMYLLKAKIYIQQNQISSAVAMLTQLLEDVREK----HWRTSI 620 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 712 ++ + GD A L+ T + AR +L + A L Sbjct: 621 QIMQAYCHIIAGDSHQAELILQSTQSKQ-------PFWLLVHARLLLLKEKPNEALTSLI 673 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 ++ + ++ + +L ++ G + A L +A +LA ++ F+ E + Sbjct: 674 QIKMKGQQEEQIATIIEATILEAICQYRLGHQELALETLHEAFELAAPFYYVRSFLDEKD 733 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 + +L + ++ + L P Sbjct: 734 ----------------------LEPLLEIYFEQLHQRWESIPTVYFSYLKEGTAFPAKA- 770 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 S LTQRE + L+ G +N +IA L ++ T++ ++ +Y KLGV R A+ Sbjct: 771 PSMLTQREKDIYDLLVDGITNREIAKRLHLSEGTVRVYLSTIYSKLGVNSRAKAIA 826 >UniRef50_Q2SIT0 ATP-dependent transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIT0_HAHCH Length = 894 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 195/907 (21%), Positives = 358/907 (39%), Gaps = 25/907 (2%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-I 59 +++ +KL D + R+RLL ++ + R + +PAG+GK+TL QW + Sbjct: 2 IVLETKLFPLRLDDSLLTRQRLLRRIGAPGSARFIGLVAPAGFGKSTLARQWTQSHHALT 61 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA-E 118 W SLD DN F Y++ +++ A Q+ +A+ L L +L Sbjct: 62 SWISLDPADNSASTFWGYVVEGLRRNGLEDVAELRARLQETAHANARVLVTALINQLHLH 121 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 LV+DD H I N I + + + + P N TL+V SRN P +A +V+ Sbjct: 122 QDRHFVLVLDDLHHIANKDILDGLTYLVDFAPANFTLIVTSRNEPSFPLARWKVKRYARL 181 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH- 237 + S L F +E F L + ++R+ GWA ALQL++ + + A Sbjct: 182 LYSADLVFDSREVADLFALALDVKVSPEAAARVVGSTGGWAAALQLLSQADLKRADGALS 241 Query: 238 -KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + + + DY+ EVLD++ R F+L+ A + AL V G + Sbjct: 242 NEKFEQALAQAKKEIDDYVAQEVLDDLPTHLREFILEMAGAARFDVALCDLVRGAHDSHQ 301 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L+E+ + LFL +DD G+WF +H LF + + + R ++ + + Sbjct: 302 ILQELAARNLFLIPLDDAGQWFRFHELFRDGALHYLRQRQPNVHLQHCRQVVQASLERRL 361 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 E++ + +L+ L N L + E L P + L ++ +L LL+ Sbjct: 362 YLESVQLIMHIQAWDLLQSTLENIGNQLVRQGYHLYIIEWLNDAPQELLNQSLRLQLLKI 421 Query: 417 WLMQSQHRYGEVNTLLARA-EHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 W + +++ + L+ A +H + ++DT+ E L A A + + A L + Sbjct: 422 WCLLYDNQFAAIPDLVEAAKKHPLLPEQDDTVRHELRLLEAYAARSRKDIQTASALTQSV 481 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 L++L + +A LG + G L ++A +++ + + + L SL Sbjct: 482 LQDLQQINAPIKSLAYFGLGNDYYGLGRLDDAMAALKEAVTLGKLEQRFSTVLSSLGLLL 541 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLP---MHEFLVRIRAQLLWAWARLDEAEAS 592 I+ +G A + + H + + +L + A + AE Sbjct: 542 WIMQIKGDFLHAINLFRQTELWVQSYHKDGPEPNIVSCWLNSSLVLIHCALNNPEHAERF 601 Query: 593 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN-GKYHSDWISN 651 + + + + +PQQ+L + + GD A + L + + + + Sbjct: 602 LKPMLPFVDNAEPQQKLITYYTWAEFNRHCGDYSQALRHYEQAREQLEHNQRELAAFAPP 661 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP--AEI 709 ++ GD A + +G A+A+ L + + + Sbjct: 662 VMAGKLHCLLDKGDMLHAESVYAQILSKITTETSPFEGMENLSAQARYFLHKQQWPNLQE 721 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 E + A S + LL + A+R+L +AL L F++ F+ Sbjct: 722 TSELIQALAESHNSSRYQAQAKLLHAAALAGQNQPEAARRLLSEALALGESNDFVAMFLA 781 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPE 829 + + L T + L + + + + Sbjct: 782 DEACLKPLYANLNVAETSQAYLEKLQINPLPQKPAPAQEEATLSQPGGL----------- 830 Query: 830 LIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 L++RE +VL LIY G N++IA L +A T+K HIRN+Y K+G A R +A+ Sbjct: 831 ---LEELSKREMEVLTLIYEGLPNKKIADRLFLAPATVKAHIRNIYGKIGAASRTEALAR 887 Query: 890 AQQLLKM 896 A+ L + Sbjct: 888 ARHLGLL 894 >UniRef50_C0GFP5 Transcriptional activator domain protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFP5_9FIRM Length = 1123 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 189/831 (22%), Positives = 328/831 (39%), Gaps = 17/831 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 ++ SKL P + R RLL K + + +L LI++PAGYGKT LISQ+A K + Sbjct: 7 ILASKLLAPRTGVRLLARPRLLEKFTDYQSRKLTLISAPAGYGKTVLISQFAGQVKAQVV 66 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYAS--LTSLFAQLFIELAE 118 WY LD DN F +L+A +++ G + ++ L + L L Sbjct: 67 WYQLDHFDNDLALFVQHLLAGIEKHLPGLGVEIMDLVERGTDLQKELRRITTALVNSLTA 126 Query: 119 -WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + LVIDDYH I +H M + + P+ + +V+ SR LP L + L++ + Sbjct: 127 NLEEEMILVIDDYHAIEEEAVHGFMEQLLEYLPDKVHMVLSSRTLPPLHLGRLKIAGLME 186 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI + L F E F + P+ S + ++ GWA AL+L LS Sbjct: 187 EINLEDLRFRTDEISGFLLAENNEPVSGETISYLDEETGGWAAALRLAGLSINSVKVRQK 246 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 SARR + + YL EVL N+ F+ +A+L M + ++ Sbjct: 247 ASARR-TNSHRKEIYHYLASEVLQNLPQDLADFVQSTAVLDFMTPQICDLFLDRDDSYEV 305 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L+ +E Q LF G+ + YH LF +FL R + + + A + ++ G+P Sbjct: 306 LDSLEEQNLFAVV--GEGDVYRYHHLFRDFLLSRL----GEKKSNLLQKAGQCYLQAGYP 359 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 A+ L AGD + N A ++ HS + L+++P D E+P+++L + Sbjct: 360 VRAVECFLGAGDFGRAVHAVENVAGTMLLHSRWQTVRRWLQSIPEDIKQEHPKMLLFEGV 419 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 ++ + R + L+ +A + + + A++ + G+ ++ ++ + L Sbjct: 420 VLLNSGRLEQAEGLIRQAAEALAQTGDQDGIFQTKLYLARILRSRGDYGQSMQMLEEILP 479 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 + T VL +GEL +++ L+ Q +A Q H A + + EI Sbjct: 480 QFAGRPVAEWYDMTMEYSLVLGMRGELDKAVHLLNQALTLAEQEGEVHIAAQLVERLGEI 539 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 F +G A +A ++ EQ + L A + W LD+A A++ + Sbjct: 540 HFIKGDYSKAVTVHHRAAEMAPEQERQSF----LLRDSIATIYHDWGDLDQALEYAQNSL 595 Query: 598 EVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 + + L L L A G D A R +L G + + + + Sbjct: 596 KAKEQLGMTEALPYALQQLAVVQAALGQFDVAEENFMRSIDLAGQLGGEIFFQARSKALY 655 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFANNHF-LQGQWRNIARAQILLGEFEPAEIVLEELN 715 + G A + + + F + A I GE + +LE+ Sbjct: 656 GRFLGSRGRLEEARQLVDEALEMARGQSQFIYAVCLQAAAPVFIWQGEPQKGAAMLEQAL 715 Query: 716 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 775 + + L Q G + AQ + L+LA I FV E M Sbjct: 716 SVLEQIGAKYSICVTCAFLALAKRQLGEDAAAQNYAVRCLELAAPESCIQLFVANPEMML 775 Query: 776 QQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 +R ++ PE + +R+ + + H D R++ Sbjct: 776 PVVRVGLEKGLAPEFVKEIIRRMGEQAAEMLAELAVHPDPAVRRRVIAPLA 826 >UniRef50_A7NS05 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NS05_ROSCS Length = 1021 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 241/912 (26%), Positives = 387/912 (42%), Gaps = 31/912 (3%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-----AGKNDIG 60 +L P + R RL+ ++ + L LI++PAG+GKTTL+++WA A + + Sbjct: 121 RLRPPPPRPSLIARPRLIERIDDTLHAALTLISAPAGFGKTTLLTEWALHVQSAARAAVA 180 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLD D+ RF S + A+ A ++ + Q L L ++L Sbjct: 181 WISLDATDDDPVRFWSAITLALSVVRTDIGAHARSLLESPQRPPHMLLAHALLVDLNAVA 240 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 +P+ +V+DDYHLIT+ +HES+ FI H ++ LV+ +R P L +A RVR +L E+ Sbjct: 241 APIIVVLDDYHLITSAEVHESLTTFIEHLSPHVHLVIATRADPPLPLARWRVRGRLAELR 300 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 + L FT +EA F + + + D GW ALQL ALS R Sbjct: 301 AADLRFTTEEAAAFLHSTMGLDLPLDVIRALEDRTEGWVAALQLAALSIRDRADVEGFIR 360 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEE-------- 292 R + DYL +EV+ + FLL+++I+ M+ L + Sbjct: 361 RFAGSH--RAIVDYLAEEVIGRQPDHIQTFLLRTSIVDRMSAELCDALLTPAADEPGATI 418 Query: 293 NGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWM 352 Q L+ +ER LF+ +D+ W+ YH LF LR R Q A + E+HR AA Sbjct: 419 PAQAMLDHLERANLFVTPLDEERRWYRYHHLFAEMLRDRLQRTQPALVAELHRRAARWHR 478 Query: 353 AQGFPSEAIHHALAAGDALMLRDILLNHA-WSLFNHSELSLLEESLKALPWDSLLENPQL 411 GF AIHH L AGDA D++ A +L+ + L + ALP D++L P+L Sbjct: 479 EAGFADAAIHHFLQAGDAANAADVIEAIANATLWEQGDAQTLLRWIAALPDDTVLARPRL 538 Query: 412 VLLQAWLMQSQHRYGEVNTL---LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA 468 L Q W + + ++ L + E A+R+ A G+ A Sbjct: 539 ALDQVWALLASIQFDAAEARAAELDHVLTRRDAQMRSIVIGELAAVRSVAARVRGDVPRA 598 Query: 469 ERLAKLALEELPPGWF-YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 527 A A + L +R +A L E +G+L+ + L + ++A A Sbjct: 599 LEYATHARDHLASIDCSLARAIAVMNLVEARLMQGDLSSAEQLCDE-LRVASLSRNLVIA 657 Query: 528 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 L ++ +SE+ QG L A ++A +L++ + + P+ + A + + RLD Sbjct: 658 LIGVLSRSEVYRNQGRLTDARALLDEALRLLDRRGASERPIVALIHVALADIFYEQNRLD 717 Query: 588 EAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 646 EAE A + + + +L A+GD A R+E L + Sbjct: 718 EAEYYANLALRRAERWWNNDILIHSTGLLSAIRRAQGDEAAAAKLAERVEQLSLEYRV-G 776 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIARAQILLGEFE 705 ++ R TGD+ AA W + + ++ +AR + GE Sbjct: 777 WISNHTLAGRAERLLRTGDRQAAERWAAGCGLTLADDPPPERFYEYLVLARVALARGEGR 836 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A ++ L + + R + L LL Q G + A++ L+ AL+LA G + Sbjct: 837 TALPLIRRLLKQSEEGRHAIRMIETLKLLALTNRQIGDAASARQALIRALRLAEPGGLVR 896 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 FV EGEAM L + R L F Sbjct: 897 TFVDEGEAMKWLLADCGASIAPQAQQGDGDARRLLAYVDDLMGMFRSIPT-------TQT 949 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 P + PLT RE QVL L+ +G ++++IA L +A +T+++HI+ +Y K+ +R Sbjct: 950 ASPLVHANEPLTAREIQVLRLLATGRTDQEIATSLVIAVSTVRSHIKRIYAKINARNRTQ 1009 Query: 886 AVQHAQQLLKMM 897 A A L + Sbjct: 1010 AAARAHDLGIID 1021 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 98/724 (13%), Positives = 189/724 (26%), Gaps = 71/724 (9%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 ++I ++ P+ L VR RL A + R + A + + Sbjct: 275 LVIATRADPPLPLARWRVRGRLAEL--RAADLRFTTEEAAA------FLHSTMGLDLPLD 326 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 E D + A+ +AA+ A + L ++ + Sbjct: 327 VIRALE-DRTEGWVAALQLAALSIRDRADVEGFIRRFAGSHRAIVDYLAEEVIGRQPDHI 385 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 L ++ + + + + R + + Sbjct: 386 QTFLLRTSIVDRMSAELCDALLTPAADEPGATI-------PAQAMLDHLERANLFVTPLD 438 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++ + + + A + + + W A + H Sbjct: 439 EERRWYRYHHLFAEMLRDRLQRTQPALVAELHRRAARW-------HREAGFADAAIHHFL 491 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + NA+ + + + + L + L A L L + L Sbjct: 492 QAGDAANAADVIEAIANATLWEQG-DAQTLLRWIAALPDDTV-LARPRLALDQVWALLAS 549 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 I+ + + + + + +G A Sbjct: 550 IQFDAAEARAAELDHVLTRRDAQMRSIVIGELAAVRSVAAR-----------VRGDVPRA 598 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 + +A A D L D L A ++ N Sbjct: 599 LEYATHARDHLASIDCSLARAIAVMN----------------------------LVEARL 630 Query: 421 SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP 480 Q L R + R++V N G +A L AL L Sbjct: 631 MQGDLSSAEQLCDEL-RVASLSRNLVIALIGVLSRSEVYRNQGRLTDARALLDEALRLLD 689 Query: 481 PGWFYSR---IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 R + L ++ + + L + + A + + S S I Sbjct: 690 RRGASERPIVALIHVALADIFYEQNRLDEAEYYANLALRRAERWWNNDILIHSTGLLSAI 749 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 AQG A + E+ QL E + + H RA+ L AE A Sbjct: 750 RRAQGDEAAAAKLAERVEQLSLEYRVGWISNHTLA--GRAERLLRTGDRQAAERWAAGCG 807 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 L+ P ++ +L + +LARG+ A + RL G++ I + Sbjct: 808 LTLADDPPPERFYEYLVLARVALARGEGRTALPLIRRLLKQSEEGRHAIRMIETLK-LLA 866 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 + + GD A+A L + A +L ++ + + Sbjct: 867 LTNRQIGDAASARQALIRALRLAEPGGLVRTFVDEGEAMKWLLADCGASIAPQAQQGDGD 926 Query: 718 ARSL 721 AR L Sbjct: 927 ARRL 930 >UniRef50_Q21ZR3 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=3 Tax=Burkholderiales RepID=Q21ZR3_RHOFD Length = 930 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 205/908 (22%), Positives = 369/908 (40%), Gaps = 44/908 (4%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG-- 60 + +K + P + V R+ L + + +L L+++PAG+GKTT + Q A G Sbjct: 52 LDNKFNPPAPMAAQVQRQGLCEAICRSA-GQLVLVSAPAGFGKTTAMVQARARLEQTGVS 110 Query: 61 --WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W +LD DN RF L AV + G + LA Sbjct: 111 TVWLTLDRADNDVSRFMICLGEAVTRLGLG--------------GPDAAAGVDSVQALAR 156 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 P L +D++ + + +R H P L++ SR+LPQLG+A LRVR L E Sbjct: 157 SDIPFALFLDEFETVHEAAVLGLVREIADHLPRGGHLIIGSRSLPQLGLARLRVRGLLTE 216 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSP-IEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 I + +L F+ Q+A F+ R + + R+ GWATAL L +++ + + Sbjct: 217 IDADRLRFSLQDALTLFEQRRQPNVLSTEQLFRLHQKTEGWATALWLASIALDRTVDQSD 276 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 R + ++DYL ++VL R FLL++++LR ++ ++ + + Sbjct: 277 FVDRF--SGSNRAVADYLAEDVLARQPTHIRRFLLRTSLLRQLDASVCAALNPRADCVAL 334 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 LE+++ + LFL + + YH LF ++LR + + E ++ +H AA+ + ++ P Sbjct: 335 LEQLDAEHLFLSPVTGARRTWRYHSLFADYLRTQLEREHPDDVARLHLAASGWYESKDRP 394 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 AI HA+ GD +L +HA + + LL ++P +P+L ++ W Sbjct: 395 VPAIDHAIEGGDFPHAMSLLDSHADAFLEQGRMRLLSRWFASMPPSQRQAHPRLEMIAIW 454 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 E +L R+ D + + A N +R + +E+ + + AL Sbjct: 455 AACFTRGPWEAMEMLERSGASASD--DPYLRANANGIRPMLLAMQDRNEESLEVGREALR 512 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 +LP G ++ + + L G+ + L+ + + +++ + + Sbjct: 513 QLPTGHQFADTTLLNAMAHNLAVMGDQREAQQLLDAARR-EQGGSSTFNRMYTESTEGLL 571 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 QG L+ A A + + A ++ +LD+AE + Sbjct: 572 DLQQGRLRQATARFRLAVDATHAISHTHTHGNALAGVYYACAVYELNQLDQAEHLLNVYL 631 Query: 598 EVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 + P + AM + + GD+D A + LE LGN + ++ A R Sbjct: 632 PITRDIGLPDHMILAHAMRSRIAFINGDVDAASLAITELE-YLGNQRKLPRVVAAAKLER 690 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFANN--------HFLQGQWRNIARAQILLGEFEPAE 708 Q+ G+ AAA + L P + H +Q R +I G+ Sbjct: 691 ARMLQLQGNAAAAHDELMRADDPTLWSREQRQRMLAHDIQYMAMARLRWEIAFGDAGACL 750 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 L+ + A L LL + G A + AL+ A + GF+ + Sbjct: 751 GRLDAEKKRAAEAGRHRRLLVLRLLHALALQRTGDMPAAVTEIGTALQFACQEGFMRLIL 810 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 EG A+ +++ L+ ++ L+ + Q + Sbjct: 811 DEGPAVGALVQRYQSLHDSGQMRDPLLGDYLQRLLQAFGPLPTE---------IEATPEL 861 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 PLT++E +VL L+ GYSN +A +L V+ +T++TH+RN+ K G R AV Sbjct: 862 LGGVLEPLTRKEIRVLQLLVEGYSNSAMAEKLFVSDSTVRTHLRNINMKFGAHSRTQAVA 921 Query: 889 HAQQLLKM 896 A++L + Sbjct: 922 IARRLGLI 929 >UniRef50_Q1LAZ5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=5 Tax=cellular organisms RepID=Q1LAZ5_RALME Length = 914 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 220/910 (24%), Positives = 363/910 (39%), Gaps = 28/910 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKN 57 L+ SKL P L + +VR RL+ + A + RL L+ + AG+GKTTL+ Q+ AG+ Sbjct: 19 LVASKLVPPRALPNHLVRSRLVDVMVDAASARLILVRAAAGFGKTTLMQQYLERCQAGQR 78 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 W D DN +RF +L + + ++ + ++ ++ A Sbjct: 79 ACVWLRCDAADNDLQRFLLHLHTGLLRLP---GLTRHQRDERSDTIAGETIAHEIIEIAA 135 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + P +++DD +I N I E ++ +R LV+ +R P LG+ LR R QLL Sbjct: 136 SYAHPFAILLDDLEVIQNDAITEYLQQLVRVLSPQGVLVIGTRATPDLGLGGLRARGQLL 195 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 +I L F+ +EA F + P+ E + + GWA A+ L LS R H H Sbjct: 196 DINPAALRFSAEEAASFIRDKCGLPLPDGEIATLWRCTEGWAAAVYLATLSLR--GHPNH 253 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + R L++YL +++L + R FLL++++L ++ L VTG + + Sbjct: 254 AAFVRSFSGTNIELAEYLAEDILMGQSESCRDFLLQTSLLGQLSAPLCDAVTGRHDSREM 313 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L +ER LF+ +D +W+ YH LF +FL+ R Q + +H AA+ ++++ P Sbjct: 314 LSFLERNNLFITPLDGEHQWYRYHSLFASFLQHRLQVTYPDKARALHVAASRWYLSEDRP 373 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP-QLVLLQA 416 AI H L AG ++ H +LF + LL L + LL +P ++ L A Sbjct: 374 VPAIEHLLQAGLDDEALPLIAIHTPALFQAGRVRLLARWLDRIDRKRLLADPHRMGLAYA 433 Query: 417 WLMQSQHRYGEVNT-LLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 W++ RY E + A ++ ++ + E LR + + Sbjct: 434 WVLLLNRRYSEAMQTMAALLAADVPADQQAKIAFEVETLRCVLLAMTDQIEACLAAGLAH 493 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 LE +PP + + L + ++ + A + + Sbjct: 494 LERIPPDAPFRYASVVNSQAFSLVASHRYEDARRVLSRLMPGANDVRTGFQRGIADSLEG 553 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 I QG L A + H FL A L+ L++ Sbjct: 554 VIDLVQGRLSNALARFRAVAERGWSPSEVSSLRHAFL-PAWATALYEANALEDCARVLAE 612 Query: 596 GIEVLSS-YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 + P + + + +L GD D L LE + G G I +A Sbjct: 613 AMPYCKGYAPPDAMIAGFILSARLALLGGDRDRWLRMLAELEEI-GRGIQLPRAICSAWL 671 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA-------RAQILLGEFEPA 707 RV + G AA LR G +I R I GE E Sbjct: 672 ERVRVATIEGRLDAADQALRSAELHADWAASDSYGHANDIDFPDSIGWRLAIAHGEHEQT 731 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 L + A + + LLL AGR+S+A L +A++LA+ G + F Sbjct: 732 ASELADAIAVATQRQRHWRALKLRLLLAMALDGAGRQSEAFEPLTEAMRLASHEGLVRTF 791 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 V EG+ +A LR+ + + +R + A E + Sbjct: 792 VDEGDRLADLLRRWADAREAEIVRAGIDLQFVRTVLAQIPTPLAVAGEEVNKARG----- 846 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 PLT RE +VL ++ +G+ N IA ++ V+ TIK+H+R + KLG R +AV Sbjct: 847 --AAIAEPLTTREQEVLQMLAAGHRNRVIAEKMFVSELTIKSHLRKINAKLGAQSRTEAV 904 Query: 888 QHAQQLLKMM 897 + L + Sbjct: 905 AIGRSLGLLR 914 >UniRef50_A4A4M2 Transcriptional regulator malT n=1 Tax=Congregibacter litoralis KT71 RepID=A4A4M2_9GAMM Length = 888 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 181/904 (20%), Positives = 341/904 (37%), Gaps = 37/904 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKN 57 +I SKLS P V+R+ +LA+L ++ +PAGYGKT +++ W A + Sbjct: 5 IIDSKLSPPSPNRGHVIRKSVLARLDSCIGGGACVLHAPAGYGKTAVLNDWRSSLTARRI 64 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLDE D F +Y+++A ++A +G ++ + + + + L+ Sbjct: 65 PVLWLSLDEHDRSLNTFLAYVLSAYRKAISGEEPRSPSIFDLSSLSDDEATLS-VLSTLS 123 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQ-LGIANLRVRDQL 176 + H+P +V DD+H + + + +R Q NLTLV +R P LG A+LRV L Sbjct: 124 QLHTPHIIVFDDFHRAASKEVQQLVRRLAHAQIRNLTLVFSTREFPDYLGFADLRVAGDL 183 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEA-AESSRICDDVSGWATALQLIALSARQNTHS 235 LE+ ++L F +E + E + ++ + GW A+ Q Sbjct: 184 LELSHRELGFDVEEVIALYSHADDEKNERISWLKQLHERTEGWPVAIGSALRWRSQGA-- 241 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + K + S LSDY +++V ++ ++FL+ +AIL +N + + + +G Sbjct: 242 SAKDVLKRLSGRDSELSDYFLEQVFLDLPSDLQNFLMVTAILDRVNGDVSKVLCPKLDGW 301 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 + +ER+G+FL+R D+ G W+ YH L+ FL +R + + +HR AA + G Sbjct: 302 ETIRILERKGVFLERADNEGNWYRYHRLYREFLVERLRRSSSLSSDTLHRMAATWFQENG 361 Query: 356 FPSEAIHHALAAGDALMLRDILLN-HAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 +EA+ H +A D +L + W +++L++ LK L D L + P+L L Sbjct: 362 LLNEAVFHTMAVNDVRKCAQLLESLGGWQYALQGDIALVQAVLKQLSIDDLADYPRLWLA 421 Query: 415 QAWLMQSQHRYGEVNTLLARAE--HEIKDIREDTMHAEFNALRAQVAINDGNP--DEAER 470 + ++ + L R E K ++++ E + V P + Sbjct: 422 RVYMSVRVGHHRAGEEDLKRFLGFQEQKADTDNSIEPETALIETLVQRYTDRPVTRDGID 481 Query: 471 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 + ++LP + V + L + E + S R + + Sbjct: 482 RIERLADQLPLDNEVLQAVRANYLCAMYREVSEYSLSDRYAGIALDHYRAIGANYAEAFI 541 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 Q Q A ++ + + A+ + + ++ A Sbjct: 542 YYHQGLTYMRQARFSAARSCYDQGLSIAQRLFGADNDLAAIGRIFLAECYYETSEVEAAM 601 Query: 591 ASARSGIEVLSSYQPQQQLQC--LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 + ++ L++ + GD R + Sbjct: 602 ELLERSLIHAERADAWLEVYAAGYTTLLRIAYEGGDTSMLERIFARAMETASR-RQLPRL 660 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 S + + + ARA I +E A Sbjct: 661 ASLVALQDEDLALRQ---QTVPQRFLNADPKLEWDQVSQALRVSITARAHIDAQNWESAR 717 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 LE+ + A+ + LLL+ W G A + A+ +A Sbjct: 718 HALEQPRQEAQRTGFFRGYIQLSLLLSATEWNCGNTEHAIEIFESAVSIAILEDARQVLF 777 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 E + + L+ ++ ++ + RA + + E V Sbjct: 778 EERQLLLPILQYILGPDSSAAMAPARASFLRKLRADMQVTAQLIEQEQCV---------- 827 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 L+ RE ++L + G SN +IA ++ T+K H++N++ KLG + R +AV Sbjct: 828 -------LSIREIEILRCLMMGESNREIAAGKALSINTVKFHLKNIFSKLGASSRDEAVA 880 Query: 889 HAQQ 892 A + Sbjct: 881 FAIR 884 >UniRef50_B2TCN8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2TCN8_BURPP Length = 900 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 207/904 (22%), Positives = 362/904 (40%), Gaps = 30/904 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 L+ +K S P + R LLA+L + RLAL+T AGYGKTTL++QW Sbjct: 9 LVSTKFSPPRIGAKYITRVDLLAQLQRKRHCRLALVTGSAGYGKTTLLAQWRKVCLKASA 68 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 ++ W +L D F++ L AA+Q+ G + + A++ + A + Sbjct: 69 EVAWLALTADDKSYADFSTALFAAMQRI--GISVATDLSLEVASAAAMDAAIAAIVEAAV 126 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 LYL+IDDY + P+ H+ M+ + P NL V+ SR P L ++ LR+ DQ++ Sbjct: 127 GLPKELYLMIDDYQYVEAPLAHKFMQKLVDQGPGNLHFVIGSRLTPPLSLSRLRMMDQIV 186 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSP-IEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 E+ S L F E + F D L I A E + I + GW + +QLI + R + Sbjct: 187 ELDSDGLPFDLAETRSFVDENLGPGKINADELTLIHELTGGWPSCIQLIIIMLRNRPDAR 246 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + +S L YL +EV+ + F + +I R + L VTG E+ Sbjct: 247 ATLGDLI--WRSSDLQAYLSEEVMAQLPAELSEFAVALSIFRRFSAPLAREVTGNEHAAD 304 Query: 297 RLEEIERQGLFLQRMDDTGE--WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 LE +E + L + R+D W+ +HPLFG FL R + E+HR A+ + A Sbjct: 305 LLERMEDENLLITRVDSDDRTAWYRFHPLFGEFLATRLARREGDAVRELHRRASRWFAAH 364 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G +EA+ HA A D ++ A + ++ L L+ LP +LL + +L+ + Sbjct: 365 GLLAEAVRHASAGEDVEFAASVIERAAPATWSVEYLGPTLHLLERLPEQTLLSHQRLLFI 424 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + R + LA + + + + + A +A + L + Sbjct: 425 ACLTVALTTRPAKAKAWLAHLQANAASA-DPEIASSLPLVHAAIAFQHDDTQRMIDLLEP 483 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 + + + + + L G T + L + AL + + Sbjct: 484 HRGDTFD-NPFLQYLLVAELCAAYAAAGRFTEARRLF-NLHPVPPAERNNDMALVAQATR 541 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 + + +G + A + + A + R+D A + Sbjct: 542 ASTILLEGNAREAERESAGLLTRSVQAVGRHSISANICASVLADACYELDRIDVARETIA 601 Query: 595 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 + +L S P + + L + D A + + L + + +++ Sbjct: 602 NRRGLLHSSGPDVLIHTSLCRARLDLLQESADAALDFVQQQTAHLRSMR-QIRAVAHMLA 660 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNH-----FLQGQWRNIARAQILLGE-FEPAE 708 +V + D A A L + A+ +ARA++L + E A Sbjct: 661 EQVKILLLKHDHAGALETLTLLDEIAEAHTAEQGSKAEIPAIAALARARVLRHDQPEEAL 720 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 L+ +A + LL + + SDAQ + A++ A R G + FV Sbjct: 721 RALQITRRHAEAFGRGRLAALADLLSAIVLAEQRSDSDAQACFVRAVEAAQRLGLVRTFV 780 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 EG A + L ++++ L A +L + + + P Sbjct: 781 DEGAAAGRLLAKVVREGKLEGATLQYATGLLEKFPDSAISEGLAGNARRAGASKLQP--- 837 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 LTQRE ++L L+ SN++IA L++ T+K ++RN++ KLGV+ R DA+ Sbjct: 838 ------VLTQRELEILSLVGQAMSNKRIALALDITIETVKWNLRNIFSKLGVSSRYDAMV 891 Query: 889 HAQQ 892 A++ Sbjct: 892 WARK 895 >UniRef50_D1UL69 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UL69_9BURK Length = 921 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 208/904 (23%), Positives = 360/904 (39%), Gaps = 30/904 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK----N 57 L+ +K S P V R +LA+L RLAL+T AGYGKTTL++QW + Sbjct: 30 LVSTKFSPPRIGAKHVARADVLAQLQRMQYCRLALVTGSAGYGKTTLLAQWREARLKTGA 89 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 ++ W SL D F L AA+Q+A G + + +++ + A + Sbjct: 90 EVAWLSLTAEDKNYIDFCGALFAAMQRA--GMAVEMDLPLESTSASAMDASIAAIVEAAI 147 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + LYL IDDY + P+ H M+ + H P NL V+ SR P L ++ LR+ +Q++ Sbjct: 148 DLPKDLYLFIDDYQHVEAPLAHRFMQKLLDHGPGNLHFVIASRVAPPLSLSRLRMMNQIV 207 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSP-IEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 EI S L F E + F D L I A E + I + SGW + LQLI + + Sbjct: 208 EIESAGLPFDLAETRAFIDENLGPGKINADELTLIQELTSGWPSCLQLIVIMLKNRPD-- 265 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 ++ +S L YL +EV+ ++ F + +ILR + AL VT E+ Sbjct: 266 ARAMLHDLVWRSSDLQTYLSEEVMAHLPAELAGFAVALSILRRFSPALARAVTDNEHASD 325 Query: 297 RLEEIERQGLFLQRMDDTGE--WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 ++ +E + L + R+D W+ +HPLFG FL R E E+HR A+ + A Sbjct: 326 LVQRMENENLLIIRVDSDDRSAWYRFHPLFGEFLATRLAQREPEEARELHRRASRWFAAH 385 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G +EA+ HA A GD ++ + ++ LS L+ LP ++L ++P+L+ + Sbjct: 386 GQLAEAVRHASAGGDVEFAASVIERSTPAKWSLEYLSPTLHLLEQLPEEALFQHPKLLFM 445 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + R + LA + E + + + A +A + + Sbjct: 446 ACLTVALTTRPAKAKAWLAHLKTEALAGYPELARS-LPLIHAAIAFQHDDTQRMIDALEP 504 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 + + + + + L G + + +A AL + Sbjct: 505 -HRDASIENPFLQFLLVAELCSAYAAAGRYADAKRMFD-LHPIAPAERDNDMALVAQATH 562 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 + L +G ++ A + + A + R+D+A + Sbjct: 563 ASTLLLEGNVREAERQSAALLARSLQAVGRHSISANVSASVLADAWYELDRIDDARETIA 622 Query: 595 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 + +L S P+ ++ ++ L + D A + L G+ + ++N Sbjct: 623 NRRGLLQSSGPEVMIRTSLCRVRLDLLQEGPDAALAFLQHQAAHFGSMR-QPRAVANMLA 681 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL------QGQWRNIARAQILLGEFEPAE 708 +V + D+A A + + E + + Sbjct: 682 EQVKVLLLKHDRARALEVAGLLDELARTHAAARGHKAEIASLAALARARLTRDDEPQESL 741 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 L+ E A+S LL + + AQ L+ A++ A R G + FV Sbjct: 742 RALQITGEYAQSFGRGRLAALVDLLSATAFAEMKNADGAQACLVRAVESAQRLGLVRTFV 801 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 EG + L ++++ TL A +L + P Sbjct: 802 DEGAPAGKLLARMVRERTLEGGALRYANELLDRFPESSVSDGTTGSPRRSTGSKLQP--- 858 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 LTQRE ++LGL+ SN++IA L + T+K ++RN++ KLGV+ R DA+ Sbjct: 859 ------VLTQREIEILGLVAQAMSNKRIALALNITLETVKWNLRNIFAKLGVSSRYDAMV 912 Query: 889 HAQQ 892 A++ Sbjct: 913 WARK 916 >UniRef50_Q46V70 Regulatory protein, LuxR:Tetratricopeptide TPR_4 n=3 Tax=Cupriavidus RepID=Q46V70_RALEJ Length = 947 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 214/932 (22%), Positives = 356/932 (38%), Gaps = 62/932 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KND 58 + +KL P+ + V R + + A RL L+ +PAG+GKTT + Q A Sbjct: 40 LAAKLRPPLLTPYQVERSAICDTICAAGFVRLVLVRAPAGFGKTTTMLQCRARLEAAGVP 99 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W +LD DN RF L A+ G A L +A Sbjct: 100 TVWLTLDRADNDATRFLGSLEVALSPVLEGAPKR----PSDHAGADAGEQALALMDRVAR 155 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 H L +DD+ + NP + + + P VV +R +P+ G+ LR R +LLE Sbjct: 156 HHGAFTLFLDDFEALQNPAVVGLVWQLVESLPPGARAVVGTRWVPETGLGRLRARGELLE 215 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I QL F+ E + F +E A S + GW TAL L ++S + Sbjct: 216 IEPAQLRFSASETESFLRHARGLKLEQAAISALHRRTEGWPTALWLASVSMERRAQPETF 275 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG-------- 290 A + + ++DYLV++V ++ R FLL+++IL + L + Sbjct: 276 IAGF--SGSNAAIADYLVEDVFHHLPEPVRDFLLRTSILDQLCGPLCDALYQWGPQPPAV 333 Query: 291 ------EENGQMRLEEIERQGLFLQRMDDTG-----------EWFCYHPLFGNFLRQRCQ 333 N L +ER LFL ++ +W+ YH LF +FLR + Sbjct: 334 ADADAPAGNSADILAWLERANLFLLPLESERYGERGTGEQSQQWYRYHSLFSSFLRGQLT 393 Query: 334 WELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLL 393 + + E+H AA+ + QG P AI HA+AAG +L A L + LL Sbjct: 394 QTMPQAVAELHMAASRWYEGQGRPVPAIEHAIAAGALDHALQLLDGSAGGLLAQGRMRLL 453 Query: 394 EESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNA 453 L+ +P L P+L + +AW + E LL + + + A A Sbjct: 454 TRWLEMVPPAELARWPKLQIARAWAVSFTRGPAEAIALLQASST---EDATGELLAHVRA 510 Query: 454 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ 513 LR + DEA A+ L LP G+ + + + + + G+ + L+ Sbjct: 511 LRHMLLNMMDRFDEARAFARNELPPLPMGYAFPDAILATSMARLAAVSGDYVEARRLLAV 570 Query: 514 TEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLV 573 Q R D ++S + I QG LQ A A + + + Sbjct: 571 ARQAVRGSDSNFNKIFSESVEGLIDLRQGRLQQALGRFRIAARTMLPNRFGPTNGNAMAC 630 Query: 574 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ-CLAMLIQCSLARGDLDNARSQL 632 + A+ L+ D + + + Q+ +L + + RG++D A L Sbjct: 631 ILLAEGLYETGDSDRSGRLLNVYLPLSRDLGLADQIITGHLVLARIAFERGEVDQAHEWL 690 Query: 633 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF------ 686 LG+ + + + +A R G++ AA L+ P Sbjct: 691 A-ALEHLGHHRGLTRLVMSAMLERARLALRQGNRHAAEEALQRAGDPALWRTRPGVSSFA 749 Query: 687 --LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 744 ++ R + + +E A S +LM + +LL Q Y + G Sbjct: 750 SDVEDITVGRLRLALHVEPTAQVREAVERELAAAVSNQLMRRALKLRILLAQAYQRTGDG 809 Query: 745 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQ 804 + A V+ +AL+ GF+ F EG+ + + + Q + + + Sbjct: 810 AQALVVMAEALRFGAAEGFVRIFADEGDEVRRLVAQACARQGGNLPSAYVERLLGACGQG 869 Query: 805 HHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAA 864 + + PLT +E +VL L+ G+SN +A L V+ Sbjct: 870 P--------------DVAPSGQAAPAPLVEPLTPKEQKVLQLLAEGFSNVAMAQRLFVSE 915 Query: 865 TTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 TT++TH+RN+ KL ++R AV A+QL + Sbjct: 916 TTVRTHLRNISAKLHASNRTQAVAIARQLGLL 947 >UniRef50_Q0KDB0 Transcriptional regulator, LuxR-family n=1 Tax=Ralstonia eutropha H16 RepID=Q0KDB0_RALEH Length = 903 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 199/910 (21%), Positives = 355/910 (39%), Gaps = 32/910 (3%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----K 56 +LIP+K + P + R +LLA+L + + RL L+ AG+GKTTL++QW Sbjct: 13 LLIPTKFAPPRISPQSTPRAKLLARLLDSRDSRLTLVCGSAGFGKTTLLAQWRQQLLKDG 72 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W SL + +F +YL A+QQA ++ R + L A + + Sbjct: 73 ELVCWLSLSPDERHLPQFRAYLTGALQQAGLPVDDGTALASEVRADLPVAGLIATIVDAV 132 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + ++L IDDYH + + H ++ + H PE L L++ SR P L ++ R+ +L Sbjct: 133 CQRRQEVFLFIDDYHHVDDSDTHALIQGLVDHGPETLHLILASRTHPPLAVSRQRLTGEL 192 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 EI L F E + F L + ++ I D GW LQ+I + + A Sbjct: 193 SEITFPDLPFDFAETQDFLAKHLGDVV-PDDARLIHDITDGWPVCLQMICIRLK--RSPA 249 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 ++ + L YL ++V+ ++ F+ K ++LR N L VT Sbjct: 250 NRDVLSQMLHRRTDLQRYLSEDVVRHLAPDVTDFIEKLSVLRRFNADLAQHVTANAKAPA 309 Query: 297 RLEEIERQGLFLQR--MDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 L++IER+ LFL +D W+ +HPLF +FL+ + Q A + EIH A++ + + Sbjct: 310 LLDQIERENLFLLPAELDSPQPWYRFHPLFASFLQDQLQQRDPALMREIHARASQWFEQR 369 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G EA+ HA A D ++ + + S S L+ + LP D LL +P+L+LL Sbjct: 370 GLLIEALRHAYHAHDTEAAVHLVERADLPIRSMSFFSTLQHWMDELPADMLLGHPRLLLL 429 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 W + + R+ + L R E + + + LRA +A+ + + A L Sbjct: 430 GCWALVAAGRWRDAQGWLERLEKTPRTLA-PGLALHALYLRASIALQRDDTEAALALVAP 488 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 + + + R +VL G + +L + ++ R AL + Sbjct: 489 S-DFESLTDRFLRQAHLAVLSFSYCAAGRYEDARSLHEHIARLPRSELQDDMALVAESTL 547 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 +G + A T H + A + L EA Sbjct: 548 LLSHLLEGNNREAIRTGSALVARAEAAHGRRSVSAVNSAAFLANAYYEADLLAEANEVLA 607 Query: 595 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 + +++L P+ + + + + L+ E + ++ Sbjct: 608 NRLDLLRLSSPEPMTLAIIVRSRLMATQASAAQGLHALSE-EEVRCRELALDRPLAYVLA 666 Query: 655 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL-------QGQWRNIARAQILLGEFEPA 707 + + AA + + AR + ++ A Sbjct: 667 GQARLELQLNHQDAARKLQTELDRLASRYRYGTGFLAEIEAIAALTGARLALAGMDWNEA 726 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 E L + + + LL + ++A R+L A++ A R G + Sbjct: 727 LARAETLRNYGVAYGRQKCVVQADLLAGTALAEMDEATEAMRLLRAAVEAAQRLGLVRTL 786 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 + EGE + Q L+QL + + + R + H + E Sbjct: 787 LDEGERVRQALQQLQPTLGPGSGGDYLVEVLRRGVAAH-------------TPVQQAGEP 833 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 L RE ++L L SN++IA L + T+K +++N+++KLGV R DAV Sbjct: 834 DAQANGPELKPREIEILRLAAESMSNKRIALTLNLTLDTVKWNMKNVFEKLGVPSRYDAV 893 Query: 888 QHAQQLLKMM 897 A++ + Sbjct: 894 IAARRRGLID 903 >UniRef50_Q21QQ8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21QQ8_RHOFD Length = 894 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 193/909 (21%), Positives = 360/909 (39%), Gaps = 39/909 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS----QWAAGKN 57 L+ +K++ + R RL + A+ RL +T+P G+GKTTL + W A + Sbjct: 9 LLGTKVNSLRAPRGAIDRARLDVVRAAASFARLVTLTAPGGFGKTTLAAAWTTHWLASGH 68 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 W SL++ D++ RF L AV + G + Q A+ ++ + L +L Sbjct: 69 HCAWLSLEQDDDEPVRFMHGLTHAVDRLGPGVGQSALALLQGSVLAAPRAVVSLLVNDLE 128 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + +++V+DDY I + IH++M F + H P + LV+ SR+ P L ++ LR + L Sbjct: 129 KVQGEVFVVLDDYQWIHDSAIHDAMAFLVSHVPSTVHLVITSRDAPPLMLSRLRAHGEWL 188 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + + + F +E F + P AA+ +++ GWA AL++ AL Sbjct: 189 NVDANAMRFDAKETDHFLRTACAQPPTAAQIAQLYASTGGWAAALRIAAL------GPGG 242 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + AS +L++++L ++ + T F+ ++A+L +N L VT +E+ Sbjct: 243 AGVLEASASGASRAFTHLIEDLLASIPVDTVRFMAQTAVLEHLNVDLCNAVTAQEDSAEL 302 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L+++E+ ++ +D G W Y L ++L L + ++H AA+ + Q Sbjct: 303 LDQLEQVNQLVEPLDSEGRWLRYPQLLRDYLLGPLTQRLKIDQLQLHGRAAQWFARQSAW 362 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 ++A+ HALAAGD + +++ +L +L L + P + L P + L AW Sbjct: 363 TDAVRHALAAGDGTQAIEWMVHCCMALVKTGDLMTLVGWRRQFPAELLRSQPSVQLAVAW 422 Query: 418 LMQSQHRYGEVNTLLARAEHE-IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 + RY + LLA E A+ A+ A A + A LA+ Sbjct: 423 GLTLAMRYEDAVPLLAEIERANPLITGHADAQAQCLAVHAVAAGLQDDSARAGELARAWC 482 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 E G ++ V ++V+ V + + ++ + Sbjct: 483 ELGVQGDAWTFNVVSNVMRYVHWVSRDWAGVYEQPWEPYSFEEDRRNVFSTVYREVILGY 542 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 + QG L A +A + Q + A L + RL+EA A Sbjct: 543 VEMEQGRLGLAERHAREALRQAEMYAGTQSVSAALAAPLLAMLHYEHDRLEEAAALLHPL 602 Query: 597 IEVLSSYQPQQQLQ-CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 + + + + + +L + + +G + A + E + G + + Sbjct: 603 VSLTDNTAILESVMQTYLVLSRIAWIQGQCERAFELIGHAEAI-GYNRGWDRLVGAMLME 661 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFA------NNHFLQGQWRNIARAQILLGEFE--PA 707 R+ A A+ H +R+ A + L + A Sbjct: 662 RLKRLIDENRLDEANATAVRLARLAALKATLPSGVHTDLLVFRDWGHALVALADRRASEA 721 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 I L L + A+S R + L + + A L + + A R G Sbjct: 722 RIALRRLFDLAKSERNDLRAIQTGTSLVLAHMADDDRDGAFETLREVILTAQRIGVHRSI 781 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 + G + L + + + +R+L + Sbjct: 782 LDAGGDLQALLPRFLVSSHCNAELAISVRRLLAV------------------DANEADKA 823 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 + LT+RE VL L+ SG SN+++A + ++A T+KTH+++++ KLGV R+ AV Sbjct: 824 NKTGVAGTLTERERDVLMLVASGQSNKEVARSMNISAETVKTHLKSIFGKLGVQQREQAV 883 Query: 888 QHAQQLLKM 896 A+ + + Sbjct: 884 VLARAVGLI 892 >UniRef50_Q1D1L7 Transcriptional regulator, LuxR family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D1L7_MYXXD Length = 902 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 198/913 (21%), Positives = 352/913 (38%), Gaps = 44/913 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN---D 58 L+P+KLS P V L ++ + +L L+T+P G GKTTL++QW Sbjct: 12 LLPTKLSPPRAASVLVPCGAALRRIDHGVSGKLVLVTAPLGSGKTTLLTQWYREARVPHL 71 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 + W SLDE DN ERF +YL+ A+++A + A + L Sbjct: 72 LAWLSLDEQDNAPERFFAYLVGAIRRAAPDF--------DAYSTSQPEHATAVILQSLWS 123 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 L +V+DD+H++ + + + + H P ++ VV SRN+P+L +A L++ +QL+ Sbjct: 124 LGRELVVVLDDFHVLRERPLVRAFSYLLDHSPPHVHWVVSSRNIPELDLAKLKLTEQLVT 183 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + + L + ++ + + + + GW ++L LSA H++ Sbjct: 184 LDGRDLNLDGEAIRELGLRLCGAVLTPEDIDSLRTRTEGWVAGVKLALLSA--GEHASVS 241 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 A R A + ++ YL D VL R FL+ S+++ ++ AL + G G L Sbjct: 242 DALRKAIGSNHDVARYLADAVLREQPEEVREFLVLSSVVEQLHGALCNALLGITRGHTLL 301 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 ++ER LF+Q +D +W+ YHPLF + LR + + A +P +HRAA+ + P Sbjct: 302 GQLERSQLFIQALDTERQWYRYHPLFLDVLRAQLACDYADRIPRLHRAASAWFAENQMPD 361 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 EA+ HA A+ D + + EL+ + L ++ +P + + Sbjct: 362 EALTHAFASEDRDWCLALTARCMEAWMREGELASVLHWTAKLTAQEVIRSPAICVGHIAC 421 Query: 419 MQSQHRYGEVNTLLARAEHEIK-----DIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 + R+ L A+H + E + A + + + Sbjct: 422 LILSRRFAHATAALRDAQHHLDTADEVSAPERERLTKRLAHLTLLHAVLSDSAPDTGMDL 481 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 A + + L + + H+ ++ + Sbjct: 482 DASPGSEESDVFIAGAVLAAKAYRALRMNRFDAMRRLALSARETLQGHNNPFLVGYTDVL 541 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 + AQG ++ A E+AF+ + + P+ A + RLDEAEA Sbjct: 542 VALADRAQGNMKDAAARCEEAFERASR--GRRNPVWANAATALANARYEQNRLDEAEALC 599 Query: 594 RSGIEVLSSYQP-QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 + +L + ML + RG A L+ L +L G ++++ Sbjct: 600 VEVLPLLPQASVFETFALAYLMLARIKTVRGKYAEAYRLLDYLHGVLECGHQT-RFLAHV 658 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANN----------HFLQGQWRNIARAQILLG 702 ++ + + A + E + A + G Sbjct: 659 CGEKIRLYLVEQAPARMRVVAQEFGLGERMRRGEWSEKRFYDETWERLGLAQAWVLMARG 718 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 + A +LE L +A + +S L + +W+AG A L LA R G Sbjct: 719 RHDKAHAILEVLRASAHEVGYVSRETALLATIAVCHWRAGDAMAAFAALNRGFALAQRFG 778 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 F E + + + + L R +++ R+ Sbjct: 779 FGRSVFDETPGLQEVVIAAARQRKLSYAFPDRYATRYQDLLSAG------------TRVP 826 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 P PLT+RE Q+L L+ G SN++I+ VA +T K H+RN++ KL V Sbjct: 827 REFAAPPSAPLEPLTERELQMLKLLAQGLSNQEISERSNVALSTTKWHLRNVFAKLDVTT 886 Query: 883 RQDAVQHAQQLLK 895 R A+ AQ+ L+ Sbjct: 887 RTAAIVKAQERLQ 899 >UniRef50_A2SJY0 ATP-dependent transcriptional regulator-like protein protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SJY0_METPP Length = 905 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 217/901 (24%), Positives = 353/901 (39%), Gaps = 34/901 (3%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND----IGW 61 K+ P H V R LLA+L R+ + PAG+GKT+L+ Q A GW Sbjct: 17 KILPPHAHRHAVERSALLARLFRDVAERVVVFQGPAGHGKTSLMLQAQAASASGGALTGW 76 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 SLDE DN R +L A+ ++T L L E Sbjct: 77 LSLDESDNDIRRLLGHL-QALLTVLGSQSPTPPNEDYAGSAGTITPRSDWLIGRLLELGR 135 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P+ L +DD H IT+P +R I + P+ + + SR +P++G+ L V D+ L + + Sbjct: 136 PVALFLDDLHAITDPGALRLLRELITNAPDRIRWFLASRVVPEVGLPRLVVGDEALVVSA 195 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 + L F+ E + FD + E I GW A+QL L+ + S S Sbjct: 196 EDLRFSRAEMRHVFDADRGLSVSDTELDAIFRGTEGWPAAVQLYRLAL--GSASVRHSLA 253 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 G ++DYL + VL + FLL++++L M+ AL V G +GQ L + Sbjct: 254 SGCGGAPREVADYLAENVLGQQPPPVQDFLLQTSVLSRMSAALCDDVLGRSDGQEMLASL 313 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 ER GLF++R++ WF YH +F NFL+++ +HR AA + +QG EA+ Sbjct: 314 ERDGLFVRRLESGEGWFTYHAIFANFLQEQLARTQPEHRVAVHRRAAAWFESQGQLEEAL 373 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HH L+AGD ++ + + +L + ++ LP D+ P + + +W Sbjct: 374 HHHLSAGDDDRACEVFDHWSDALVPDGHFATVDRWSHRLPADAATRRPGIAVKLSWAFTF 433 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 R+ ++ LL + + + + A+ +P A P Sbjct: 434 LIRHEQLAPLLPVLRANLA---RRLIEGDPRLALSMAAVLQDDPARALEYVAHTEHREPT 490 Query: 482 GWF---YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 + +V G V +GE +L + Q ++ + + +SL+ L Sbjct: 491 SNRFRNFELAAGHNVRGFVGMMRGEFGPALHSLAQGRSLSERSNATFTLAYSLVHSGLTL 550 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 AQG L A E A LE+ L L+ + +A A + Sbjct: 551 VAQGQLPEAVEHLRGAIS-DRRMVLEESVSKACLACALVMALYEADQTGDALALFEQFHD 609 Query: 599 -VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 ++ + + C + + RG+L A L E L NG++ + RV Sbjct: 610 MIVEASLHDYLVVCYRAVARIRDQRGELALALETLEEAERLSYNGRW-PRAVQLIQGERV 668 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQG-------QWRNIARAQILLGEFEPAEIV 710 + G A ++ R + G A Sbjct: 669 RRELVAGRVDRAQTLAARLQPESRSDTDDWVRFSEETDGPRIGRIRLDLHAGRAAQALDE 728 Query: 711 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 770 + A+ + R L + G+ A R L AL+LA ++ F+ E Sbjct: 729 IGACLAAAQRQGRVHRQIRLQTLAALAHHSLGQTRPAHRCLQLALELAAPGRYVRMFLDE 788 Query: 771 GEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPEL 830 G A+A LR L A+ +L + + A D + L Sbjct: 789 GPALAALLRAHANLPAAAPENGAEARALLGRLIEASGTAPAPADTPWRAAAL-------- 840 Query: 831 IRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 PLT+RE +VL ++ SNE+IA L V+ T+K H+RN+Y KLGV R +A++ Sbjct: 841 ---EPLTKREHKVLAMLVDYQSNEEIASALCVSRDTVKFHVRNIYSKLGVKTRLEAIRVV 897 Query: 891 Q 891 + Sbjct: 898 K 898 >UniRef50_C1AXQ0 Putative serine/threonine protein kinase n=2 Tax=Corynebacterineae RepID=C1AXQ0_RHOOB Length = 1161 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 186/830 (22%), Positives = 321/830 (38%), Gaps = 17/830 (2%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDIGW 61 K P V R RL+ L + RL L+ +PAG+GK++L++QW + W Sbjct: 336 KFRPPTTTRRLVPRRRLITALRAGRDRRLTLVHAPAGFGKSSLVAQWRDDLVEAGTAVAW 395 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 ++D DN F S+L+ A+++ ++ + L L + Sbjct: 396 LTVDRDDNHLVWFLSHLVEAIRRVRPEVVGELGQALEEHGGTVERFVLTSLINRLHDSGE 455 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 L +VIDD+H IT+ ++M F + + +L +VV SR+ L ++ +RV D+L EI S Sbjct: 456 ALVVVIDDWHRITDAGPVDAMTFLLDNGCHHLKIVVASRSRAGLPLSRMRVLDELNEIDS 515 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 +LAF E++ F R+ P++ + ++ D GW ALQL +LS R+ + + Sbjct: 516 GELAFDFDESQNFLSDRVRVPLDDTDVEQLRDSTDGWIAALQLASLSLREAGSPENLIEQ 575 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 AG +A + +YL + VLD ++ F+L +++ + L + + G +GQ +LE++ Sbjct: 576 LRAGTDA--IGEYLAENVLDALEPDMLDFMLATSVPGKVCGDLASALAGVPDGQAKLEQV 633 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 + LFL R D +W+ YH LF L QR + + + ++HR A + + + EA+ Sbjct: 634 AARDLFLGRTGDDRQWYRYHHLFAQILHQRLERDHPGRITDLHRRAHDWFRERHLLREAV 693 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 H LAAG+ ++L L + S++S L + LP + + P+L L W Sbjct: 694 DHILAAGEPQRAVELLEEDDLYLLDRSQMSTLLCLIAKLPAELVASRPRLQLTIGWANCE 753 Query: 422 QHRYGEVNTLLARAEHEIKDI-----REDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 R RA ++ R + E + L+ + + L L Sbjct: 754 LQRLELAQAARTRALEQLDAGEMPERRAAELRVEADVLQGDIEATADRIEGVRDLVAECL 813 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 + + +A + V + + RQ+ + + Sbjct: 814 AQPAEYHPFVVSMAALIETYVDCYEFRFEDAYRRQSWAAPYHRQNTGPYSVAYGYCFAGL 873 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA-RS 595 F Q L A E +AF L+ E Q P + A++ + R+DEAE S Sbjct: 874 AKFEQLDLGGAMELYRRAFDLVREAANTQSPHARLTRALLAEVHYEQGRVDEAEELLNES 933 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 ++ + + RGD + A +L+ + + Sbjct: 934 FDAAALGGAADFMIRHYCLGARIMAVRGDREAAARRLDEGARTAETFS-LPRLRAAVDAE 992 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 715 RV G A + Q + + R G+ AE E N Sbjct: 993 RVRIGLPPGPGFVAVTHETRRTPADGIGLATAQLEEESAIRLLEAQGDPGAAERACEWAN 1052 Query: 716 ENARS---LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 + R + + LL W AGR +AQ LL A R I G Sbjct: 1053 DWVRELDGTGRHRARLQAVRLLVACLWAAGRVEEAQAALLPAAVDCARHDLIRFLPDGGP 1112 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 + L L + + P L + + +L N+ + A Sbjct: 1113 NVVAALSALTRNDH-PGLPRAFTEAVLAAANRPPASRGATAPAASRSGRG 1161 >UniRef50_Q4ZXS3 Regulatory protein, LuxR n=22 Tax=Pseudomonas RepID=Q4ZXS3_PSEU2 Length = 920 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 213/918 (23%), Positives = 358/918 (38%), Gaps = 51/918 (5%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI--- 59 + + RP + V R RL +L RL L+ +PAG+GK++L ++ G D Sbjct: 29 LEGRFFRPPLPEGYVPRARLCQRLDAGLGGRLLLVCAPAGFGKSSLAVEFCQGLPDNWQN 88 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMA---QKRQYASLTSLFAQLFIEL 116 W L D+ RF L+A++QQ + Q+ Q + L EL Sbjct: 89 VWLGLSARDSDPGRFLERLLASLQQFFPQLGTQAMALLKMRQRHQPFAFEEWLDGLLDEL 148 Query: 117 AE---WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 A PL LV+DDYHL PV+ ++F + H P L ++V SR P +A LR+ Sbjct: 149 AMHLMLSKPLLLVLDDYHLAQGPVLDRCLQFLLNHLPAGLVVMVTSRQRPDWHLARLRLT 208 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 QLLEI Q L TH E+ + S +++ + GW L+ L+A + Sbjct: 209 RQLLEINEQDLRLTHAESMAVLERHSGS-LDSEALQSLIQRSEGWVAGLRFWLLAASEAG 267 Query: 234 HSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 + + + + +YL++EV+D + + FL +A L L + Sbjct: 268 DESALP--QTLRGSEVLIREYLLEEVIDCLPADVQAFLYDTACLERFCAELCDAARDGHD 325 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 L ++ +FL +D+ G WF YH LF + LR R +H A + A Sbjct: 326 SAGMLGYLQAHQVFLVPLDEQGHWFRYHHLFSDLLRARQAAGAPPTR--LHLNACRWFSA 383 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQLV 412 QG EA+ AL AG + +++ N + L + +L LP D L P+L+ Sbjct: 384 QGQLDEAVEQALRAGHLDVAANLVQNLSEEQLLAEQNVGMLLRWKMDLPDDLLTSTPRLI 443 Query: 413 LLQAWLMQSQHRYGEVNTL---LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 +L AW + + L L+R + +M A++ AL +A G+ ++ + Sbjct: 444 VLYAWALGLACQLDAAEELANQLSRFLPAPSATAQKSMLAQWLALSGIIARGRGDSEKTQ 503 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 AL LP + R+V S L + G+L R+ L + ++A++ + Sbjct: 504 HYCTEALLSLPEKRYGQRLVCLSTLANLAVANGDLWRARVLNRDALELAQRVANPLFEAL 563 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM-HEFLVRIRAQLLWAWARLDE 588 + ++ +L A+G + A E + Q + + +L L LL ++DE Sbjct: 564 AHYDRARVLQARGEILRALEEVRQGQQRLKDLSTVRLYAVRARLTLYEGYLLTLRLQVDE 623 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS-D 647 +G+ + + L ++ G A ++L E L+ Sbjct: 624 GRVLLLAGLAEARACRDISVLIGHCVIATMEGCTGRFAEAFAELAEAERLMHIWDVPPIY 683 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHT-------AKPEFANNHFLQGQWRNIARAQI- 699 +++ V+ W + G A WL H Q + RA + Sbjct: 684 YLAMITLVKCELWLLQGRMDLAEAWLLRLTQTYNGGLGAAAPECHPQLPQHIELQRAVLE 743 Query: 700 -LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 758 G+ E L+ L A+ + + L R+ +A+ +LL +L A Sbjct: 744 RQQGDGVACEQRLQALERRAQEVGAKLLGLIAMTQQIGLLLSQARRDEARALLLRSLPAA 803 Query: 759 NRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFV 818 + + + GE QL+QL + Sbjct: 804 SGGALMPFNALLGEHPEWLHEQLVQLPPCRVQAALLEKL--------------------- 842 Query: 819 ERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKL 878 P L+ RE VL LI G SN++I+ +L ++ T+KTH ++ KL Sbjct: 843 -PACCTPSPEAAHGGDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKL 901 Query: 879 GVAHRQDAVQHAQQLLKM 896 GV R AV A+ L + Sbjct: 902 GVERRTQAVARAKTLGLL 919 >UniRef50_Q397N7 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Burkholderia sp. 383 RepID=Q397N7_BURS3 Length = 889 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 198/899 (22%), Positives = 347/899 (38%), Gaps = 51/899 (5%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDIGW 61 K S P +VR LL +++ + ++ +P G GK+TL+ Q A + IGW Sbjct: 25 KFSPPAARRGAIVRHALLERVTRLGVPHVVILHAPLGSGKSTLLRQIMEIGTAKRWTIGW 84 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 +LDE DN RF +Y IA V Q ++ A+ ++ + + Sbjct: 85 LTLDENDNDPRRFETYFIALVTQMVADAGGPA----PEQSPATTDNMIDWVLDRFGQIPG 140 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P+ L IDD I +P I +R +R P + + SRNLP +G++ L V ++ L + Sbjct: 141 PIGLCIDDLQWIRDPAILRFLRDLLRALPGRCRIYIGSRNLPDIGVSTLLVAEEALVLRM 200 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 + L F+ E+ +F ++A +S + GW LQL L+ + + + Sbjct: 201 EDLRFSPAESVEFMTASDDEALDAEIASFVQARTEGWPAGLQLFKLALARG--NPWHTVD 258 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 + L YL + L + FLLK+++LR +N +L VTG + L+ + Sbjct: 259 EMRDCGPLELVRYLSENTLSLQPPDAQVFLLKTSLLRRLNGSLCAEVTGAHHADAVLQRL 318 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 E+ GLFL+ +D W+ YH LF FL +R + + ++HR AA ++ G P EA+ Sbjct: 319 EQDGLFLEALDGNPGWYRYHSLFARFLSERLGQDDPDGVLDVHRRAAHWYVRHGVPEEAM 378 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 +HA+ A + + L A L +EL+ + LP + +L N L + AW + Sbjct: 379 YHAVEAREYALAVRTLDEWASRLIAGAELATVAYWFDRLPLNEVLGNRSLAIKVAWALVF 438 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 R + LL+ + ++ H + + A + + + A RLA + + P Sbjct: 439 LRRGSPTHPLLSYLDETRAREQDGATH-NPDVVLAMATMFNNDLRGAARLANIPVLHQPA 497 Query: 482 GW---FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 + A ++L ++ ++L + + Sbjct: 498 RDIFEAFELGAAANLLTFSAMATWHEEDIHHMLVLANSHNDHAQAAFSQGYTLALRCILQ 557 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI- 597 G + A E ++ + L R + LD E A Sbjct: 558 VTSGQPRLATEAPRATSGTRPWPYVNRGMAAVALAASRIWACYEADALDIGERLATQFED 617 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 E+ + P+ + + + ARG + AR L+ LE L ++ S R+ Sbjct: 618 EIALAAVPEFIALSMVSIARIHAARGRMIQARDTLDTLERLSFQSQW-SGVREMIAWERL 676 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQG---QWRNIARAQILLGEFEPAEIVLEEL 714 + +GD A L+H ++ +I L F EL Sbjct: 677 YFAGRSGDAARVDALLQHVTDDASPSDPVWIPITEMLSGRLLGRIRLALFRQQLDRAGEL 736 Query: 715 NENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 + A ++ + +L + + G A R L + A+ G + EG Sbjct: 737 LKAALAITPARPLLSVKLHVLQALVQHRQGHTRLALRTLQGVRETASAGGCRRALLDEGA 796 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 + L Q + + P Sbjct: 797 ELVALLDQAPDAEMPHTAQA------------------------------SEQRSPTAAW 826 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 L+QRE ++L L+ SG SN +I+ +L ++ T+K H++N+Y KL V +R A+ AQ Sbjct: 827 YGALSQREQEILRLLCSGASNREISEKLFLSENTVKFHLKNVYLKLDVKNRAQAILKAQ 885 >UniRef50_A2SE70 ATP-dependent transcriptional regulator-like protein protein n=2 Tax=Methylibium petroleiphilum PM1 RepID=A2SE70_METPP Length = 933 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 205/909 (22%), Positives = 348/909 (38%), Gaps = 36/909 (3%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKNDIGW 61 KL P V R+ +L ++ ++ R+ ++ PAG+GK+T + Q A W Sbjct: 44 KLFTPPVYPGAVPRQAILDRVLQDDSLRVTVLQGPAGHGKSTTLQQIKTAHEARGWRTAW 103 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 +LD+ DN RF S+L+A + A ++ + L + L+ + Sbjct: 104 LTLDDADNDPRRFESHLVAVMSLLHG--RAASPGASRSGTGDAPRDLADWMLDTLSGRIT 161 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P + ID++ + N + R + P N+ + + SR LP++G+A L V + + Sbjct: 162 PASIFIDEFQALRNEALLRFFRSVLARLPANVHVFIGSRTLPEIGLATLMVNRVASVVRA 221 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 L FT E QFF S + A E I GW +QL L+ + Sbjct: 222 DDLRFTPGEVTQFFADSASLQVSAGEVDAIYRRTEGWPAGVQLFRLALVS--PEVRMALD 279 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 L++YL D V+ + FLLK+++L+ ++ L T VTG E+ Q L + Sbjct: 280 GADDHGPRELAEYLADNVMSLQSPRMQEFLLKTSLLQRLSAPLCTAVTGFEDAQELLVRL 339 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 ER GLFL+ +D WF YH LF +L + Q L ++H+ AA+ +A P EAI Sbjct: 340 ERSGLFLRALDSDNRWFRYHGLFSTYLAETLQRNGPEALRQVHKKAAQWCLAHELPEEAI 399 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HHAL + + L + + L +EL LE LP+ + + P LV+ A+ + Sbjct: 400 HHALCCRNFPLAASTLTDWSSQLVAGAELITLERWHDRLPFHEVAQRPALVIRAAYALMF 459 Query: 422 QHRYGEVNTLLARAEHEIK-----DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 R ++ LL + + + L V + + A + Sbjct: 460 LRRRPKLRPLLELMAPQAGGGDIVPTTNPDLCRAMSFLL--VDDDMAAAADTVEQAGVVQ 517 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 536 EL + A +VL G+ + + + ++ Sbjct: 518 RELEGFPAFELGAAANVLALGKVASGDFEGARQALALARAHLGRGGGSFVGGYTAAITGS 577 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 L QG LQ A + E L+ L L+ L E+ A Sbjct: 578 NLLVQGRLQEALAHLRD--ENAQEAPLDTSVAGAALAACHMFALYEANDLATLESLAHRF 635 Query: 597 -IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 E+ S + + ARG D A + L+ LE + G+ ++ + Sbjct: 636 QREISESVTLDFIAAAHIAISRMHEARGRSDEAVAVLDELERI-GHTSPWQRLVAVSEWE 694 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN-----IARAQILLGEFEPAEIV 710 RV G+ A A + + ++ + + A+ Sbjct: 695 RVRRALAGGEIERAVALATRIAPDSRDDAPHWIHLAEDVEGSGYGWIRLAIARHDHADAA 754 Query: 711 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 770 E AR + + +L L + G ++ A R L AL+L R ++ + E Sbjct: 755 QRIARERARQTGRVYRDIKLSVLETLLQQRMGARNAAHRCLRKALQLGRRGRYVRCLLDE 814 Query: 771 GEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPEL 830 G+ + + LR+ Q R + E +E Sbjct: 815 GDGVIELLREAYQN----------LLRGHEPGGGTGTDPDRDYIELLLEASGTDLGRQAA 864 Query: 831 --IRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 T L++RE ++L + G +N +IAG L V+ T+K H++N+Y KLGV +R A+ Sbjct: 865 GNALTEALSEREKEMLRFLLDGTTNREIAGRLFVSENTVKFHLKNIYSKLGVGNRLQAIN 924 Query: 889 HAQQLLKMM 897 A+ L + Sbjct: 925 TARALRLID 933 >UniRef50_C8SFS0 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SFS0_9RHIZ Length = 871 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 210/876 (23%), Positives = 338/876 (38%), Gaps = 36/876 (4%) Query: 33 RLALITSPAGYGKTTLISQWAAGKND----IGWYSLDEGDNQQERFASYLIAAVQQATNG 88 R+ L +PAG+GK+T ++QWAA W S + DN + F S+L+ A++ Sbjct: 2 RIVLFAAPAGFGKSTTMAQWAAELARHGRLTAWLSCEATDNDEGAFLSHLVGALRHLVQN 61 Query: 89 HCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRH 148 A + Q L + + L A + + L DDYH+I + M R Sbjct: 62 -PAELDLAFQSSPIPQLEVVLSALVAGFAARDAEITLFFDDYHVIETEAVKRFMERLTRQ 120 Query: 149 QPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAES 208 P N+ V+ SRNLP L + LRV + EIG L F EA+ FF+ +L + + Sbjct: 121 APANVAFVIGSRNLPDLQLGKLRVLGDVFEIGPDDLRFVSSEAEAFFNDKLGLSVSSGTV 180 Query: 209 SRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATR 268 +C GWA LQL +LS +++D+L+ EV + A Sbjct: 181 EALCSRTEGWAAGLQLASLSLSAAHAPETVIGNFT--GANRNVADFLMGEVFLGLPPALA 238 Query: 269 HFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFL 328 FLL S+I + + V + + + EIE + LFL +D+ WF YH LF +FL Sbjct: 239 KFLLHSSIFQRFSAEACRAVLRVADAEADIAEIETRNLFLVPLDEERRWFRYHHLFRDFL 298 Query: 329 RQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHS 388 + + + +H AAAE + + +EAI HALAAGD + N+A L Sbjct: 299 IREMERRAPEMIAPLHLAAAEWFGERKMLTEAIGHALAAGDQARAAVFIENNALELIAQC 358 Query: 389 ELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIRED--- 445 +L + + L LP + + +L L+ WL + LA A I+ D Sbjct: 359 QLLYVRQLLALLPRKLVDQRIRLQLVVLWLAVHSSQPEIAQQTLANARKLIETGPTDGKD 418 Query: 446 -------TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL 498 T+ AE L A V ++A A AL + P ++ +V+G L Sbjct: 419 PGTLTGTTIEAEIAVLDAAVHSTLERFEDARDTALAALRVIAPDAWFMEGATANVIGYNL 478 Query: 499 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 558 + G+L + A + + + + I + G L A Sbjct: 479 YALGDLEGARAAADAARKAHERSGSLLGVTIANCYMAVIERSAGRLPAAERLLRNTIIEA 538 Query: 559 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-PQQQLQCLAMLIQ 617 + + A+L + EA + ++ L + + Sbjct: 539 RTRIGANSYAEALAGTLLAELAYETNASGEALTLVENLGPLIEGAAVIVYPLASVPTYAR 598 Query: 618 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 677 G D A L R+ + G + S R+ A L Sbjct: 599 VLQLTGRADAALDMLERVYQRV-RGSVYRRLASVLVHDRIRLLLDQNRIVEARALLSEHR 657 Query: 678 KPEFANNHFLQGQWRNIARAQILLGE--FEPAEIVLEELNENARSLRLMSDLNRNLLLLN 735 + + ++ A ++L E A + + L E ++ M L+L Sbjct: 658 RESAETEPTVANEFEFFAEGRLLTAEKSHAAAAAIFDALLERTKNSGRMRRHILALILRA 717 Query: 736 QLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRA 795 + + + R LL+AL+LA +GFI FV EG + + L +L + Sbjct: 718 KTTVH--DQRETDRHLLEALRLAQPSGFIRSFVDEGRPVVEGLMRLRAAQAKTDPA---- 771 Query: 796 QRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQ 855 + D + LTQRE ++L + G SN Sbjct: 772 ---------LSAYAARIIDAAQTMPVATRKPAAPTADKEQLTQRETELLRCLSEGMSNRD 822 Query: 856 IAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 IAG L V+ TT+K H++N++ KL V++R AV+ AQ Sbjct: 823 IAGALSVSETTVKWHLKNIFGKLSVSNRVQAVRAAQ 858 >UniRef50_A7HS86 Regulatory protein LuxR n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HS86_PARL1 Length = 921 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 196/907 (21%), Positives = 348/907 (38%), Gaps = 39/907 (4%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKNDIGWYSLDE 66 ++ V+R+ L +L RL ++ +PAG+GKTTL+ Q+ A + + W L+ Sbjct: 34 AGANNLVLRKHQLDRLKNHTGVRLIVVQAPAGFGKTTLLRQYCAWREAQGSRVAWLHLEA 93 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 RF + AV AI E + ++ + + +V Sbjct: 94 HYADPSRFLRLVCEAVA------GAIEEESPSAALPDNSSASIQDFLRVVRGTDVGIVVV 147 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +D++ + + + +R P+N+ L + +R +P + + L++R+Q + + + L F Sbjct: 148 VDNFEQAAHSGMEAVIAQLVRVLPQNVQLCIGTRVIPAINLPRLQLREQAVVVNVEGLRF 207 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 E +FF I E + GW ALQ I LS R T A Sbjct: 208 RANETTEFFREF--RDISEEELDKYQVATDGWPAALQCIRLSMRGRTGRAKP---LPISG 262 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 L D+L +V +N+ + LL + + + L+ ++G +G+ L EIE GL Sbjct: 263 VTPDLIDFLATDVFENLSGDIQRALLDACMPERICPELLESISGRPDGEGSLGEIEHLGL 322 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELA-AELPEIHRAAAESWMAQGFPSEAIHHAL 365 FL +D WF +H +F L R + EL+ AE+ HR AE + A GF EAI H + Sbjct: 323 FLTPVDMDHRWFRFHTVFRQVLLTRLRRELSEAEILARHRKIAEWYAAHGFSEEAILHYI 382 Query: 366 AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRY 425 A D +L L N L L+ L D + ++ + + Sbjct: 383 EATDQEAAAALLNAIIGRLVNEERLDLIVRYTDRLSPDVIQNYEHILNAAIVAYGFRREF 442 Query: 426 GEVNTLLARAEHEIKDI-REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF 484 + N ++A ++ + R E R A+LAL+ L Sbjct: 443 IKANRIIALRRAALERENASKEAWGVHHYTRIFTTAAQDQVVEIGRTAQLALDHLADAPG 502 Query: 485 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 544 VA + L+ + + + Q + + + + +L QG Sbjct: 503 LEYAVALNARAYWLYLNSKFEEAREALAQARALHDEAHNLFGLSYCEWIYANVLSTQGRN 562 Query: 545 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 604 + A ++ ++A +E + + A+ L+ + EAE + +L Sbjct: 563 EEALKSLKQAQIHNDEGATASVTAGSVIAACLAETLYEKNCIAEAEMLLHDHLLLLEQQA 622 Query: 605 P-QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 663 + + + ++ RG+ A L+R+ LG+ + A V + Sbjct: 623 IVEPLALAFLTMARVAMLRGEEREAEEVLDRMM-YLGHRYNLRRLVIYAKAELVRQATLA 681 Query: 664 GDKAAAANWLRHTAKPEFANNHFL-------QGQWRNIARAQILLGEFEPAEIVLEELNE 716 GD A + E L + Q AR IL G A +L+ Sbjct: 682 GDLDKARTRFASMGQGENDGEDDLVYFAGETEAQTITEARLLILAGRHADARALLQPAAR 741 Query: 717 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 776 ARS R M + LLL G+ + A+R L++AL++ FI + EG + Sbjct: 742 KARSQRRMRRFLKLNLLLAISLNVEGQVNSARRALIEALQVGAPDQFIRLILDEGPQALR 801 Query: 777 QLRQLIQLNT------LPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPEL 830 L + + R+L E + + + + H Sbjct: 802 LLHEARAALPKFPDLPQKDSVSAYLDRLLSEAGEFAPALMPDAGHDENDDISPH------ 855 Query: 831 IRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 LT RE ++L L+ +G+SN+ +A L ++ T+K H+RN+++KL + +R AV A Sbjct: 856 -LLEELTDREREILRLVSNGFSNKALADRLSLSTNTVKWHLRNIFEKLQIGNRMQAVSVA 914 Query: 891 QQLLKMM 897 + + Sbjct: 915 RHFGLID 921 >UniRef50_C1BC55 Putative serine/threonine protein kinase n=2 Tax=Rhodococcus opacus B4 RepID=C1BC55_RHOOB Length = 1154 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 184/821 (22%), Positives = 298/821 (36%), Gaps = 19/821 (2%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDI 59 +K P VVR RL+ L + RL LI +PAG+GK+TL SQW + Sbjct: 336 STKFRPPTSTRPLVVRRRLIDTLQSGAHRRLVLIHAPAGFGKSTLASQWRGVLVEDGASV 395 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W S+D DN F ++L+ AV+Q + + + + + L E+ Sbjct: 396 AWLSVDPDDNNVVWFLAHLVEAVRQVRPALARELGQILEDHPPDAARYVLSSLIDEIHSS 455 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L +VIDD+H ++ E+M F + H +L LVV SR L ++ +RV D+L+EI Sbjct: 456 GERLVVVIDDWHRVSADETIEAMDFLLDHGCHHLQLVVTSRTQAGLPLSRMRVSDELVEI 515 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 L F EAK F + +E + + GWA ALQL +LS R A Sbjct: 516 DPDALRFDASEAKAFLLDVNGLRLSESEVTELAIATDGWAAALQLASLSLRGRDDPAEFI 575 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 R + +YLV VL ++ FL+ +AI + L ++TG ++GQ LE Sbjct: 576 --RHLSGRHHAIGEYLVANVLHTLEPHLLDFLMATAIAEKVCGDLAAKLTGLQSGQALLE 633 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 E E + LFL +DD EWF YH LF FL++R + A E+H A+ + G SE Sbjct: 634 EAEGRDLFLTSIDDDKEWFRYHHLFAEFLQRRLERVDPARARELHLTASTWFEDHGMLSE 693 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ H +AA D ++ + L +S ++ L + LP P+L L AW Sbjct: 694 AVDHVMAAKDFDRAAHLVESGGMELIENSRMATLLGLVAKLPPAVAYNRPRLQLTVAWGN 753 Query: 420 QSQHRYGEVNTLLARAEHEIKDI-----REDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 R + L R + + + E N +RA + + + L Sbjct: 754 VLLQRPKVMQLALDRLSSSLDSESMTEWEQRAIAREANLVRAVAKVLADQSEGVQDLIDD 813 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 L + + A+ V + E + + Q A++ Sbjct: 814 ILRDPDGLRPFVASAASDVASFLAIHNFEFAAARRWQDWARRYHEQTVGPFSAVYGHCMA 873 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 + + A A L + + + +L+ +D AE Sbjct: 874 GVAAYEVLDVGEAENIFHTALALARQTGM-HSHAARLAGALLGSVLYDKGAIDGAEELLD 932 Query: 595 SGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 E+ L + + + RGD D+A +L + Sbjct: 933 RSNELGPEGGVVDIMLATYGVGSRIKVLRGDRDSATIRLEEGARIAEKLH-LPRLAKRIV 991 Query: 654 KVRVIYWQ-----MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 R+ + A ++ F + + A E A Sbjct: 992 NERIRAGLPIDPSLEARLKDAGPREEMENGIAEVSSQFDEDSTIMLLLADRSDASIEAAL 1051 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 L E+ + + L + LLL AGR +A+R L G + Sbjct: 1052 ARGRALVESVKKQKRPRALMVSTLLLVHCLASAGRMDEAKRTLAPVASQCAVLGLPRLLL 1111 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHK 809 G + L QL++ + R + + Sbjct: 1112 DGGAEIPHVLSQLLEDVRSGDRWLRRWPDVTASFLTDAMGR 1152 >UniRef50_A4XVC8 Regulatory protein, LuxR n=7 Tax=Pseudomonas aeruginosa group RepID=A4XVC8_PSEMY Length = 907 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 190/913 (20%), Positives = 346/913 (37%), Gaps = 38/913 (4%) Query: 2 LIPSKLSRPVR-LDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----K 56 L+ +KL + R LL +L A RL ++++PAG+GK+T++SQ Sbjct: 14 LLRTKLYPAHGEGAPLLERSALLERLLAAREQRLIVLSAPAGFGKSTVLSQLRRRLQEHG 73 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W S DE D++ RF YL+AA++ A G + + Q L ++ +L Sbjct: 74 ARVAWLSCDEADSEPARFLQYLVAAIESACPGFGSSASALLQGEISWPLEAVIDAFLDDL 133 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 LYL++DD+H I +P + + R+ I P+++ LVV +R P+ + Sbjct: 134 KALPGELYLMLDDFHRIRHPSLGQGARYLIERLPKHVRLVVSTRYQPRFLDEPPSLGGWA 193 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 + ++ L + E + ++ AE ++ GW TAL L AL+ + Sbjct: 194 FWLRAEDLRLSRGETAAYLRTIKQLALDEAELDQLHARTEGWITALHLAALALPRQRD-- 251 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + +++DYL ++V+ ++ A + FL ++++L N L +TG +G+ Sbjct: 252 RAAFLAGLSGAERNIADYLAEDVVASLPEAQQLFLDQTSVLDEFNAELCNALTGRRDGRD 311 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L ++ + LF+ +D+ GEWF YH LF FL+ R + + AAA A+ Sbjct: 312 MLRRLQSEQLFVIPLDEQGEWFRYHHLFAEFLQGRLAKRG--DPAHLLHAAARWCEARDL 369 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 ++I +AL A D ++L L + + + LK +P + E P + A Sbjct: 370 ADKSIKYALRARDYGFAAELLERQGARLIAGNRVYGILAILKDIPPVVIAEQPVFQIFYA 429 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIRED-------TMHAEFNALRAQVAINDGNPDEAE 469 W + + ++ E L+ + R + A L+A V + + Sbjct: 430 WQLAFEQKFAESEALIEEVSTRLTQGRGKGMHFGLIELLAAAQVLKALVLLYQDKLEACL 489 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 ++A L +P R V GE + + + RQ + + + Sbjct: 490 KVAGHWLALVPQNQPVFRASLACVQAAAFALLGEFGEAAKAIAVARENLRQCESEYLHVM 549 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + + ++ I G L+ E A + + + + L A LL+ R Sbjct: 550 ASLIEALICKEYGELERGRALAEAARARVEQVFGRRSRVGGPLGLAYADLLYEQDRHGAI 609 Query: 590 EASARSGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 A P + + + ++ + G + +L+ L Y + Sbjct: 610 LAELPLATTWRDVATPVELISRGKLVMARARFFAGAAEQGLEELDEWLAGLQGPGYERVF 669 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG----EF 704 + A +L+ +A +Q L Sbjct: 670 AIGMGCKVQFLLWLRRPNEAQRIYLQLERHLATLPIERYGDAHTALALSQARLALSERRV 729 Query: 705 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 764 + A+ LE + R LLL+ YW+ G A +L L+ A + G+ Sbjct: 730 DKAQASLEACLAKQGAEHQRDRRLRLSLLLSVAYWRKGNSEKAFALLRATLEEAWQRGYR 789 Query: 765 SHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 F + + +LRE + F+EN Sbjct: 790 RLFQDDALWLLPLWDAWCSAEPKCAAAWQGLAELLREQCRRMAIDPESFEEN-------- 841 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 ++ RE ++L L+ +G SN IA + ++ TIK H+ NL+ KLGV R Sbjct: 842 ---------QDVSHREREILRLVAAGLSNRDIAQTVHLSEATIKWHLHNLFSKLGVRSRT 892 Query: 885 DAVQHAQQLLKMM 897 AV + L + Sbjct: 893 QAVLKGKSLGLLS 905 >UniRef50_A6CQL5 Transcriptional regulator n=1 Tax=Bacillus sp. SG-1 RepID=A6CQL5_9BACI Length = 1099 Score = 365 bits (938), Expect = 4e-99, Method: Composition-based stats. Identities = 151/784 (19%), Positives = 295/784 (37%), Gaps = 28/784 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 +I S+L P D + R L KL+ + L L+ + AGYGK+T + +A ND Sbjct: 30 VIQSQLMPPPVKDSFMRRASLHKKLASIPKYPLTLLHARAGYGKSTALILFAHDIHNDAC 89 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAI----CETMAQKRQYASLTSLFAQLFIEL 116 WYS+ D+ F + L+ A++ + + + Q + SL + E+ Sbjct: 90 WYSVSPNDDDIIPFLTKLVHAIKAKIPAFGSPVLAELDMLHQHISDEQMWSLISMFVNEM 149 Query: 117 AEWHSPLYLVIDDYHLITNPVIHE-SMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRD 174 + +++DDYH + ++ E M+ F+ + P NL LV+ SR P G + +L+V+ Sbjct: 150 VGLKDEVVVILDDYHHVQKSMVIEKWMKHFLEYIPSNLHLVISSRTKPSWGILTSLKVKA 209 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +LLEI + L + E + + I + RI GWA A+ ++ + R + Sbjct: 210 ELLEIKQEDLMLSMDEIEHLLEDIYEITITQQDLQRIHQLTEGWAIAVHMLVGNMRNSDM 269 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 L D+L EVL A + FLLK++IL + + V G + Sbjct: 270 PG--GFLDNRSETLQDLFDFLALEVLSKQPFAIQEFLLKTSILDELASDVCDAVLGTGDA 327 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 Q L+++ RQ +F+Q +D G + YH LF FL+ R + + ++R AA+ + + Sbjct: 328 QSVLQKLSRQNVFIQEID--GMKYRYHALFKEFLQNRLRRTRQEDYINLNRKAAQFFEEE 385 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 A+HH L G+ ++ H L +L L + LK +P + E P L Sbjct: 386 -NIENALHHYLQVGEYSYGARVISLHGRELLQKGKLQTLLDYLKPIPEELKYEFPTLWFY 444 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 Q + + + Y + +A ++ + + + A++ ++ PD+AER+ + Sbjct: 445 QGEISRLRSSYDWAESCYRKAITSGEEAGDHYLVSIALEGIARIYLDTIQPDKAERVLQR 504 Query: 475 ALEELPPGW--FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 A+ +L E L G+ ++ ++ E + + Sbjct: 505 AIALRENSNESREEMAKLYHLLSENLLNSGQAVKAKKWYERAESLNLPLEEG-------N 557 Query: 533 QQSEILFAQGFLQTAWE-TQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 ++ I G L A + ++ ++ ++ H + + + +E++ Sbjct: 558 LKARIYLRTGRLNKARDLLLKRKNSSMDSSNVHISQSHRETDILLSIIEAFRGNPEESKK 617 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN---ARSQLNRLENLLGNGKYHSDW 648 A G+++ Q C M + ++ + A ++ N Sbjct: 618 YAEQGLKLGMDIQSPFVEACGWMRMGHAVQLIERYESFLAEKCYKTSLEIMDNIDVPRGK 677 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLR--HTAKPEFANNHFLQGQWRNIARAQILLGEFEP 706 + I G A + + + A I G++E Sbjct: 678 AEPYMGL-CILLGKQGQYEKAIEAGQKGLYETERVKDVWLSSLIQLCMGIAAIYCGKYEA 736 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 A VL E+ + + ++ ++ + + L + Sbjct: 737 AYDVLVEVRNQFEGCGDRYGMMLTSFWKAYIAYETEQEENFCDEMRQFLNELQIGEYHYF 796 Query: 767 FVIE 770 Sbjct: 797 LTRR 800 >UniRef50_A8VQD6 MMPL domain protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VQD6_9BACI Length = 722 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 162/690 (23%), Positives = 277/690 (40%), Gaps = 16/690 (2%) Query: 2 LIPSKLSRPVRLDHTVVR----ERLLAKLSG--ANNFRLALITSPAGYGKTTLISQWA-A 54 ++ +K P D V R +L L A + RL L+ +PAG+GKTT + W Sbjct: 5 ILYTKTVVPPADDAVVERLVRFSDILQDLQRSDAFSRRLTLVQAPAGFGKTTAVRNWITH 64 Query: 55 GKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMA-----QKRQYASLTSLF 109 WY++DE D+ F SY++AA+ + + S TS Sbjct: 65 SGKPAAWYAMDEQDHHPLTFWSYVMAAIGVIQPETVREPQAILMNPETDDPGDDSWTSWM 124 Query: 110 AQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIAN 169 L P +VIDD+H ++P I +M + I H P + +++ +R P I Sbjct: 125 VPFLNALMHAEDPFLIVIDDFHFASSPEITSAMAYLIEHLPSTVHVLITTRERPPWPIVK 184 Query: 170 LRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSA 229 + + L ++G +L F+ EA F+ R + + + + + GW T L+L +S Sbjct: 185 WQAKGWLTDVGKDRLRFSIPEADMLFEKR-GVRVNPSLTEELVNWSEGWITGLELTLVSH 243 Query: 230 RQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT 289 T A + + L+ +L +EVL + F+ SA+L + + V Sbjct: 244 LYGTMQPGHDALGHSDLGVKTLTAFLTEEVLRQLPGHLLDFMETSAVLHKFSPVMCDEVL 303 Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAE 349 + Q + +E + LFL R++D G WF YH + G L R + A + IH+ A++ Sbjct: 304 ERSDSQEVIRFLEEKQLFLVRLNDDGSWFRYHHIMGETLTDRLRQSDPAVIRRIHQRASD 363 Query: 350 SWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 G EAIHHA A D + IL HA SL E E + AL + L P Sbjct: 364 WLSRNGALHEAIHHADKAEDEGRVAQILHYHAESLTYSREPVAFIERINALSHERLRSFP 423 Query: 410 QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE--FNALRAQVAINDGNPDE 467 +L + + + L+ A D R++ + E + L D+ Sbjct: 424 ELFAYSLFYRLLMKGHDGCDALINEARTLSCDNRQNQLVYEGMLDVLSFFYWTGHHAFDK 483 Query: 468 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 527 A A ALE+LP ++ R+ A G++L+ G +L ++ M +H+ ++A Sbjct: 484 ARVYADSALEKLPQENYFWRMSAAVFSGDLLYYAGAPEEALPYFEEAHAMNLKHERHYFA 543 Query: 528 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 + + ++++ F G L A +T QL + F+ + +L L+ Sbjct: 544 ISTELKKAVTFFELGRLSDARKTVASIEQLAEAHGFSGISKMGFVHTLEGELTREQGNLE 603 Query: 588 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 647 EA L + + + G + +A +NR+ + Sbjct: 604 EAARLHDKARSRLPD-EHGLLAWHHLFEAKLRYSDGRVTDALQIINRILKPEQVNQIPRY 662 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTA 677 + A+K ++IY A L T Sbjct: 663 MLLQASKRKLIYLMKLNRYDEAYALLDETG 692 >UniRef50_A7NKK5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Roseiflexus RepID=A7NKK5_ROSCS Length = 880 Score = 363 bits (933), Expect = 1e-98, Method: Composition-based stats. Identities = 217/904 (24%), Positives = 356/904 (39%), Gaps = 42/904 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-----K 56 L+ +K++ P R + R RL+ +L + L+++P G+GKT + + Sbjct: 5 LLRTKIALPARHHCFIPRPRLITQLHRLIDVPATLVSAPTGFGKTMAVQEALRALATRHA 64 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 I W +LD DN +F Y+ A+ A Q A + SL A E+ Sbjct: 65 AAIAWLTLDVHDNDPVQFWRYVALALHTTLPACGATLIEALTGPQPAPVRSLLAATLNEI 124 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 L LV+DDYHLI IH+ + F I + P NL +V ++R P L + R R QL Sbjct: 125 TAQTQHLVLVLDDYHLIDLHAIHDDLTFLIEYAPPNLHIVFITRADPPLPLHRWRARGQL 184 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 LE+ + L F E + + + A E + GW AL + L+ R +T + Sbjct: 185 LEVRATDLRFDLTETTTLLNDVMRLGLSAEEIMTLLRQTEGWPAALSMAGLALRDDTAPS 244 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + + +YL DEVL R LL+ A+L +L V Sbjct: 245 PTRHIAQLAQHNRFIIEYLTDEVLAQQPAEVRALLLRIAVLERFCGSLCDAVAETTGSAA 304 Query: 297 RLEEIERQGLFLQRMDD---TGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 LE + + F+ + WF +H LFG+ LR + + ++ ++R AA A Sbjct: 305 LLETLAQTHGFIVPLPSAPNDEPWFRFHRLFGDLLRGQARCTFPEDVDALYRRAAAWHAA 364 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 G +A+ +A+A D ++ A +L +LLE L LP P+ + Sbjct: 365 HGDVEQAVEYAIAGHDFAHAAQLIERSANTLVMEGRAALLERWLHLLPDAWRQTMPRAGV 424 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 AW + + RY EV L +AE + + E +A RA +A G EA A+ Sbjct: 425 AVAWALILRGRYSEVAPYLDQAETTMLPDA-PALRGELHAARAVLAETQGRAAEALVHAR 483 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 AL+ P ++ VA + + L G++ ++A +Q + + + AL Sbjct: 484 QALDLAPADHLIAQAVAHTAIAGALRISGDIDAAIAAYEQAVPLCQAAWLRLPALLGRAH 543 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 + QG L++A + A Q +P + + +L +L++A Sbjct: 544 LGLLYLTQGRLRSAEAALKPALQSAI-----FIPAASPVFIAYSAILIERNQLEDAHQHL 598 Query: 594 RSGIEVLSSYQPQQQLQ-CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 R +++ L C L + A+GDL A+ L+ G + Sbjct: 599 RHALDLAQQSGHTAALAQCHLHLARLRRAQGDLAGAQVALDTAATFTAQG-VPAWVEPLL 657 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN-IARAQILLGEFEPAEIVL 711 RV + G A + L A ++ AR + G A L Sbjct: 658 IAERVRLYLDQGAITKARHALASRGTDIEAVAGAVREALPLIRARLLLHQGRSADARAFL 717 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 + + +A + L+L ++ A+ L AL +A G++ F+ G Sbjct: 718 DNIIASAEQSGRQGRVIEALILRTLACAALNDEAAARDDLQRALAMAEPEGYVRIFLDAG 777 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 +A+ L ++ A R+L R + A+ E Sbjct: 778 ARLARLLHRIGSA---------YAGRLLEAFPSSVRARVANLTE---------------- 812 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 PLT RE VL L+ G + QIA EL V+ T++ HI++LY KL V R A+ A Sbjct: 813 SPEPLTDRERDVLRLMARGLTYRQIASELVVSVNTVRYHIKSLYSKLQVNSRTLALARAH 872 Query: 892 QLLK 895 +L Sbjct: 873 ELHL 876 >UniRef50_B9K0P0 Two component response regulator n=1 Tax=Agrobacterium vitis S4 RepID=B9K0P0_AGRVS Length = 896 Score = 362 bits (930), Expect = 3e-98, Method: Composition-based stats. Identities = 189/907 (20%), Positives = 330/907 (36%), Gaps = 62/907 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG- 60 L+ + P + R RL + RLAL+ +PAG GKTTL++QW +D G Sbjct: 30 LLNRRSVPPSASTGLIDRPRLTRLSQLLSKHRLALVHAPAGSGKTTLLAQWHRSLSDAGF 89 Query: 61 ---WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 WYS E D FA L+ A+QQ+ + ++ + LT+L Sbjct: 90 STVWYSASEDDKDPFNFAEGLLQALQQSIADNRDHLPSLDRADALQRLTALLTD-----Q 144 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 PL L IDDYHL E++ + + +LT+V+ SRN P + + R +++ Sbjct: 145 SIRQPLALFIDDYHLAEGGDGGEAINTILASRLPSLTVVLASRNRPAIPVGRYRANGEMI 204 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 +I + L F+ +E + FF + + A ES ++ D GWA L+L AL + Sbjct: 205 DIAVEDLHFSEEETEAFFRTASNVALTADESRQMHDHTEGWAVGLRLAAL---VTGRATG 261 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + +DY ++EV+ + FL K+++L ++N L VTG+ +G Sbjct: 262 NFVAAAPSGSHRAFADYFLEEVIAGLPAEVCDFLAKTSLLETLNADLCNAVTGQRDGDRM 321 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L +E+ LF+ + T W+ YH LF FL+ R + + +IH AA+ ++ G P Sbjct: 322 LAFLEQSQLFVVELPGTQRWYKYHHLFQEFLQTRLYGDDRPAVEDIHARAAQWFIDNGSP 381 Query: 358 SEAIHHALAAGDALMLRDILLNHAW-SLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +A+ HA A + +++ + +H ++ LP ++ E P L+ L Sbjct: 382 VDAVRHAFLARQSKWAAELIETYCLYDYLSHGRFDTYSRWMQQLPREAREERPLLLFLHV 441 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIRED----------TMHAEFNALRAQVAINDGNPD 466 W + R+ + L E D + + +RA + G+ Sbjct: 442 WRSINMRRFLQAEQTLQTIEAAASDPNSPVSLIAARTGLDISGRLHLMRALIGAYGGDFT 501 Query: 467 EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 526 + + ++ S+ G+L + L + + Sbjct: 502 VGSFHLSQLAGKELDRLAFGQVDLDSIHSYFAFNLGKLDLAERLTWRANGVYDDMACHWG 561 Query: 527 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 586 + S + A+ Q A +A + + E M + + + L Sbjct: 562 GIHSRCIAAMSYLARALFQEARHVIVEALAIAEQNFGEHSYMVALPSALLGLIAYDDNDL 621 Query: 587 DEAEASARSGIEVLSSYQP----QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 642 ++AE R I + ++ L L++ G ++ A + L R Sbjct: 622 EKAERLWRRAIPAEKATDVSGLCERILIATTGLVRLLDITGRVEEATALLVRASRRA--- 678 Query: 643 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 702 A R+ + A LQ Sbjct: 679 -------YEAEDFRLEFQLGIERADRAFRLNSPAEGRREWERLSLQLPEAR--------- 722 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 +A + + +L AG+ A L A + G Sbjct: 723 ---------NRFPSSAWQIWDPFRIVEARILR-----NAGQIDAAAEKLRTLAAGARQEG 768 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 I + EA+A+ + + + R I + A + Sbjct: 769 RI-LMARQAEALAKVIAPAHEAEETQPADLEDDTMATRRILRDFISPVAASPNPGGGQR- 826 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 + + LTQRE VL L+ G SN +IA L++ T+K+H +N++ KLGV Sbjct: 827 QEARLSLRGSLTELTQREDDVLQLMRWGLSNSEIATRLDINLNTVKSHAKNIFAKLGVKS 886 Query: 883 RQDAVQH 889 R AV Sbjct: 887 RTQAVLK 893 >UniRef50_A4XVC9 Regulatory protein, LuxR n=11 Tax=Bacteria RepID=A4XVC9_PSEMY Length = 904 Score = 361 bits (927), Expect = 7e-98, Method: Composition-based stats. Identities = 214/916 (23%), Positives = 367/916 (40%), Gaps = 42/916 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKN 57 L+ SKLS P + R ++ A L + RL L ++PAG+GKTT ++ A Sbjct: 12 LLRSKLSPPQAASDYLARPQVEAALLAHPHARLVLFSAPAGFGKTTALAMLASERRHAGA 71 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SL GD++ RF LI A+ +A G + + ++ L ++LA Sbjct: 72 AVAWLSLGPGDDEPVRFFQQLIDALGRALPGLGEDALGYLRNTMRVPVEAVMESLLVDLA 131 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + PL LV+DD HLI + + ++ ++ P N TL + SR+ P L +A LR + QLL Sbjct: 132 QRQEPLLLVLDDLHLIQDAELLAALNRLVKLAPPNFTLAIGSRSQPPLSLATLRAKGQLL 191 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+GS++L +EA+ + + R ++ + + GW + L +L R Sbjct: 192 ELGSEELRLNPEEARSYLE-RSGLQLDGEAFAALYSHTEGWMIGMHLASLWLRHQPQPVQ 250 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + A G + + DYL+ V + + + LL + + ++ L +TG +GQ Sbjct: 251 QMAE--MGADQGAVGDYLLRSVFEQLPQERQELLLALGVAQQLSGDLANALTGRHDGQQL 308 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 LEE+E LFL +D +W+ +H LF FLR R + ++H A+ + Sbjct: 309 LEELEAMQLFLLPLDRERQWYRFHNLFAEFLRTRLRERDPERFKQLHFNASLWFTNHHMQ 368 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 + AI HA A DA ML +L L N +L L+ + +P P LVL+ W Sbjct: 369 NLAIEHACLAEDAEMLAALLDGCGLELINRGQLHLIHSWRQHVPDAIAERYPMLVLVDVW 428 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE----FNALRAQVAINDGNPDEAERLAK 473 ++ E N LL + +E A++A +A+ + D LA+ Sbjct: 429 SRAAELGLAEANRLLDELLQRWGQGGDSGPLSEQMFAALAVKAVIAMQKDDLDTCVSLAR 488 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 +L + + +V G+ ++ L+ +Q + + + Sbjct: 489 RIEAQLGQHTAFLEVAILTVGALAHVMLGQAEQARKLLALAQQRNHFLEGRYLDMQLANV 548 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 + + QG ++ A E+ + EQ A + + RLD Sbjct: 549 EILLCLEQGRIKQAQLLFEQLRTRMMPWFGEQSRALVLPAISDALIAYHQGRLDGLPERL 608 Query: 594 RSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 R + + P Q + L + A + L ++NL + + + A Sbjct: 609 RWALAAVDVINPIDLYAQAMLCLARVQRLHDAPKEAAATLVLMQNLAAR-NHSWRFYAQA 667 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFA----------NNHFLQGQWRNIARAQILLG 702 + + + ++A N L R Q G Sbjct: 668 VGEEIALILQEPAADRSRRAEQRLKSVDWAKLAAHYKQRKFNPVLWVLGLTRIRLQQARG 727 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 + A + +L ++ R LL Y + G + AQ +L+ L A R Sbjct: 728 HYSEALHEITQLRSQLQNDWHGLHRLRLDLLAALSYQRLGYQERAQSLLVQCLIGAEREE 787 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 S F+ EGEA+ Q L+QL P L+ ++ Q R + Sbjct: 788 ARSLFIEEGEAIRQLLQQLESAERQPALQGFLRSLLVIWPGQESRQALDVLE-------- 839 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 LT+RE +V+ L G SNE+I +L +A T+K H+ N+Y+KL V + Sbjct: 840 -----------EGLTEREREVVCLAAKGLSNEEIGQQLSLALGTVKWHLHNIYEKLKVRN 888 Query: 883 RQDAVQHAQQLLKMMG 898 R A++ A++L + Sbjct: 889 RTQAIRRARELSLLES 904 >UniRef50_Q1LKC5 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LKC5_RALME Length = 914 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 179/912 (19%), Positives = 352/912 (38%), Gaps = 26/912 (2%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKND 58 I K+ P T +R+RL+ KL A + +L L+T+ AG+GKTTL++QW Sbjct: 7 ILPKIVPPRLGSGTTIRQRLIGKLHAAGDRKLFLLTAGAGFGKTTLMAQWHHHLEQAGAR 66 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 + W +L GD +F + L +A+ +A G M + L A L LA+ Sbjct: 67 VLWVTLAAGDGTLPKFCAVLESALGRA--GVSVAPAKMVTTEDSSDEFDLAAALLDALAQ 124 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 YL+IDD+H + +P ++ L LV+ SR P L + L + ++ Sbjct: 125 APGESYLMIDDFHHVGDPATVGLVQAMADAMLPGLHLVIASRTKPALRLGRLLAMEDVVA 184 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + +L F E + F R + + +I D GW ++L + + Sbjct: 185 VDGAELLFNLDETEAFLKARPDVRLGPESAWQIHDITDGWPVGVRLASRAMCSQ--FPDG 242 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 R ++ +L YL +EV+D + F+L+ ++LR + L VTG + L Sbjct: 243 KTARKCVCDSDNLDAYLSEEVIDELSPELLDFVLQVSVLRCFHADLAASVTGCADAAGYL 302 Query: 299 EEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 EI Q +FL ++ D W+ +HP+F +L +R + + + +H AA ++ +G Sbjct: 303 AEILSQHMFLLPVERRDGQRWYRFHPIFRTYLGKR-RASVGIDARPLHYRAAHWFIQRGR 361 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +EA+ A+ + D ++ ++ + ++L + L+++ + L +P+L+ + Sbjct: 362 FAEAMRSAVLSDDLGLVTQLVDRALPPPHSLAQLGVFSRWLESVGCERLAGHPRLLSMGT 421 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 W R+ L E + LRA +A + + A Sbjct: 422 WACALSGRHDLAEQWLRSVEQSGSTGTDAAAARHVLLLRALIATHRDDGAAALTALTALQ 481 Query: 477 -------EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 +E + V ++ L +G+ R+ L + + AL Sbjct: 482 ALQVLQTDEPGSTPDALQDVELALRMRWLSVQGQHLRARDLYHSPAARSTRTGRGELALV 541 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + + + +G A + H ++ + AQ + R+DEA Sbjct: 542 AAATVAGVAMREGDALEAERIGAMVLRRARTIHGDRSLCAVTCTAVMAQAWYELDRVDEA 601 Query: 590 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE---NLLGNGKYHS 646 + L + +L+ + + R +A + R E +G + + Sbjct: 602 REALLHCRTALRAASADLRLRAAQVFGRIMSLRESPQDALAYFTRAEVHFRAIGAHRGVA 661 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL---QGQWRNIARAQILLGE 703 ++ ++ + Y ++ + + F + R + +G Sbjct: 662 CMLAEQQRIVLSYGDWRHARSMQTALDEIASTHADTDPQFAEVGAVVAMSRTRLLLAMGL 721 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 A I L+ ++ L + L + GR+++A + AL R G Sbjct: 722 AREALIALDAARPFIGAMSNGRLLAVSDFLQTRALEALGRRAEAHACMQSALAACYRLGL 781 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 + EGE + L + +E R + + + + + Sbjct: 782 HRTLIEEGEGLHGILLRAGVGGGAALVEYVRGLMGECPVLESAGVTWPPIPIESNDEGVG 841 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 P+ + LT+RE +V+ L+ SN++IA L ++ T+K +++N++ KL V R Sbjct: 842 GPKDDMPVPV--LTRRELEVIALLEQSMSNKRIALTLNISVQTVKWNLKNIFVKLQVTSR 899 Query: 884 QDAVQHAQQLLK 895 +A+ A++ Sbjct: 900 YEAIIVARKFAL 911 >UniRef50_Q0S014 Transcriptional regulator, MalT family protein n=7 Tax=Rhodococcus RepID=Q0S014_RHOSR Length = 1180 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 185/841 (21%), Positives = 313/841 (37%), Gaps = 31/841 (3%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKNDI 59 +K P V R RL +L A RL LI +PAG+GK+TL +QW A + Sbjct: 342 STKYRPPTPSRALVERGRLAERLHDAARRRLILIHAPAGFGKSTLAAQWRRTLADDGVAV 401 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W S+D DN F S+LI +++ A + S + L E+ Sbjct: 402 AWLSIDADDNNVVWFLSHLIESIRVVRPDLAAELGQILDDHGDESDRFVLTALINEIHTS 461 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 PL +VIDD+HL+T+P +M F + + +L ++V SR+ L + +RVRD+L+EI Sbjct: 462 RDPLTVVIDDWHLVTDPATIAAMSFLLDNGCHHLQVMVTSRSQSGLPLGRMRVRDELVEI 521 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 S L F +E++QF ++ S + D GW ALQL LS R A Sbjct: 522 DSTALRFDEEESRQFLVDVGGLALDRDAISALRDSTEGWVAALQLATLSLRGRDDPAEFI 581 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A ++ YL + VL ++ F+L +++ + L + G GQ LE Sbjct: 582 A--HLSGRHRGIAGYLAENVLSALEPEILDFMLATSVTERLCADLAETLAGVAGGQGLLE 639 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 +IE + LFL+ +DD EWF YH LF +FLR+R Q + + + ++HR A+ + A SE Sbjct: 640 QIEERDLFLRALDDDREWFRYHHLFADFLRRRLQRDQPSRIADLHRTASRWFAAHELLSE 699 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ +LAA D +++ + ++L S+++ + + L + P L + AW Sbjct: 700 AVDQSLAAADPDQAAELVDSRGFALIERSQMATVLGLIGKLLPAQIERRPHLQIAAAWAH 759 Query: 420 -QSQHRYGEVNTLLARAEHEIKDIRE-----DTMHAEFNALRAQVAINDGNPDEAERLAK 473 HR V++ L + + E + AE + ++A + D+ L Sbjct: 760 ILLHHRPTIVDSALDSVRVGLAALPESGNATAALRAEASLVQAAADLFRDRIDDLTELIS 819 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 L ++ + +V + + + + + ++ Sbjct: 820 DCLAREKTLRPFALAGSANVASYEAIHRFDFEAAKRWQEWAAPFHARTSGPFSVIYGYCL 879 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 +Q A + KA+ L + + + L+ LD+AE Sbjct: 880 SGLAESELLNVQEAEDYYRKAYDLARRSGGHRSYTTRLAGTMLGESLYEQGLLDDAERLL 939 Query: 594 RSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 E+ S L + RGDL A +L+ + + Sbjct: 940 DECSELGSEGGVVDFMLVTFGTGSRIKALRGDLAAAAHRLDEGTQIA-TALSLPRLAARI 998 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL--------------QGQWRNIARAQ 698 R + G A +H + + A Sbjct: 999 ENERTRWRIAPGQYPQAMTMASALPDTAAPTSHPVNGVNGVIEVTAELNEDSAIRRLLAS 1058 Query: 699 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 758 G+ A E+L A +L R LL + + DA L+ + Sbjct: 1059 GDPGDAALAHRRAEQLLARATALHRPRATLRASLLHVVTTRRVQGEHDALAALVPLVAQC 1118 Query: 759 NRTGFISHFVIEGEAMAQQ---LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE 815 +R G I EG A+ + L +L + + LR + Sbjct: 1119 SRLGLIRPLCDEGPALTRLVATLVELHESQDWDAGWPAVSAPFLRAVLASSDATSPPPHA 1178 Query: 816 N 816 Sbjct: 1179 P 1179 >UniRef50_Q39P16 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Burkholderia sp. 383 RepID=Q39P16_BURS3 Length = 932 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 196/908 (21%), Positives = 364/908 (40%), Gaps = 36/908 (3%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KND 58 I +KLS P + R + A + L L+ +PAG+GKTT+++Q A D Sbjct: 44 IAAKLSPPTAGATDISRVAPRDLVCSAQSATLTLVRAPAGFGKTTVMTQCFARFGRLGFD 103 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 GW +LD+GDN R L + + S+ + +F +A Sbjct: 104 TGWLTLDQGDNDPSRVLHVLNLCLLRMGGER-------PTSGNMPSIEDVTLAVFDRIAA 156 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 +P L +D++ I + + + + P + +V+ SR+ P L + LR + +LLE Sbjct: 157 HATPFVLFVDEFEAIHDQGVIALFQEIVDRLPRHGRIVIGSRSQPHLPLGRLRTQGKLLE 216 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + ++QL F+ E + + + + + + GW AL+L +L+ + Sbjct: 217 LDAEQLRFSLAETDRMLNGQTGMALSVEDLDHLQRKTEGWPAALRLASLALENRDATRAL 276 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 R + +++YL+++VL ++ + FLL+ ++LR + + + + +G+ L Sbjct: 277 IDRF--SGSHEAIAEYLIEDVLGSLSEPVQAFLLRCSVLRQFSVPVCSALNPGVDGEHML 334 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 + +E+ GLF+ R+D + +H LF FLR + +P +H AA+ + G+P Sbjct: 335 QTLEKAGLFVVRVDAHEPAYRFHSLFAEFLRAQLVRRHPDRVPGLHLAASHWYERNGYPV 394 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 AI HAL A + +L HA L LL LP + ++ ++ ++ AW Sbjct: 395 PAIDHALDAEAFVCASTLLQRHAIDFLAQGRLRLLARWFARLPAGCVADHAEVGIVHAWT 454 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 + GE LL DT+ A +A + ++A + L Sbjct: 455 VCLTRGPGEAMALLG--ASGWLSASSDTVRAHASACHVALLATLDRVEDAYDEGRCCLAA 512 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 LP ++ +++ V G + L+ + + ++S + + Sbjct: 513 LPNAHPFAHSSLVNLVANVATTMGHRDEARRLLGAAKSLGDP-QSVLNRMYSEATEGLLD 571 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQ-LPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 +G L+ A A + + + + A+ L+ R+ EAE + Sbjct: 572 LQEGHLRLATARFHLAATIAGGHEATGFTDGNAWAGLLYARALYEADRVSEAEPLLNVYV 631 Query: 598 EVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 + P + AML + + RGD+D A L +LE L G+ + +++A+ R Sbjct: 632 PLARDIGLPDHAIAGYAMLARLAFQRGDIDPAFLLLAQLERL-GHDRRLPRVVASAHLER 690 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFA---------NNHFLQGQWRNIARAQILLGEFEPA 707 + G+ A+ + L H ++ R Q+ G+ + A Sbjct: 691 ARLLLLQGNAEASRSQLDLAEAAAEPWARIEALRFPAHEVETLTIAKLRWQLHFGDPDAA 750 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 L + A + + +L +A + DA + GF+ Sbjct: 751 ARALAQARGAAAADGRRWREMKLRVLECLASLRARHERDALAAAAPLIGTLCAEGFVRML 810 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 V EG AQ + + + + I A FD + PE Sbjct: 811 VDEGPLAAQLALRCQADGATRARDPLLEEYLHACI--------APFDVEREAPPASVPED 862 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 + LT++E +VL L+ GYSN +A +L V+ +T++TH+RN+ KL V +R AV Sbjct: 863 GTALPAESLTRKELRVLQLLAQGYSNGALAEKLFVSDSTVRTHLRNINAKLNVPNRTSAV 922 Query: 888 QHAQQLLK 895 ++L Sbjct: 923 AAGRRLGL 930 >UniRef50_B9NI01 ABC transporter family protein (Fragment) n=4 Tax=cellular organisms RepID=B9NI01_POPTR Length = 1760 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 166/896 (18%), Positives = 328/896 (36%), Gaps = 58/896 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKND 58 I K+ P T +R+RL+ KL A + +L L+T+ AG+GKTTL++QW Sbjct: 272 ILPKIVPPRLGSGTTIRQRLIGKLHAAGDRKLFLLTAGAGFGKTTLMAQWHHHLEQAGAR 331 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 + W +L GD +F + L +A+ +A G M + L A L LA+ Sbjct: 332 VLWVTLAAGDGTLPKFCAVLESALGRA--GVSVAPAKMVTTEDSSDEFDLAAALLDALAQ 389 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 YL+IDD+H + +P ++ L LV+ SR P L + L + ++ Sbjct: 390 APGESYLMIDDFHHVGDPATVGLVQAMADAMLPGLHLVIASRTKPALRLGRLLAMEDVVA 449 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + +L F E + F R + + +I D GW ++L + + Sbjct: 450 VDGAELLFNLDETEAFLXARPDVRLGPESAWQIHDITDGWPVGVRLASRAMCSQFPDGQT 509 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + ++LR + L VTG + L Sbjct: 510 ----------------------------------RVSVLRCFHADLAASVTGCADAAGYL 535 Query: 299 EEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 EI Q +FL ++ D W+ +HP+F +L +R + + + +H AA ++ +G Sbjct: 536 AEILSQHMFLLPVERRDGQRWYRFHPIFRTYLGKR-RASVGIDARPLHYRAAHWFIQRGR 594 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +EA+ A+ + D ++ ++ + ++L + L+++ + L +P+L+ + Sbjct: 595 FAEAMRSAVLSDDLGLVTQLVDRALPPPHSLAQLGVFSRWLESVGCERLAGHPRLLSMGT 654 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 W R+ L E + LRA +A + + A Sbjct: 655 WACALSGRHDLAEQWLRSVEQSGSTGTDAAAARHVLLLRALIATHRDDGAAALTALTALQ 714 Query: 477 -------EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 +E + V ++ L +G+ R+ L + + AL Sbjct: 715 ALQVLQTDEPGSTPDALQDVELALRMRWLSVQGQHLRARDLYHSPAARSTRTGRGELALV 774 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + + + +G A + H ++ + AQ + R+DEA Sbjct: 775 AAATVAGVAMREGDALEAERIGAMVLRRARTIHGDRSLCAVTCTAVMAQAWYELDRVDEA 834 Query: 590 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE---NLLGNGKYHS 646 + L + +L+ + + R +A + R E +G + + Sbjct: 835 REALLHCRTALRAASADLRLRAAQVFGRIMSLRESPQDALAYFTRAEVHFRAIGAHRGVA 894 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL---QGQWRNIARAQILLGE 703 ++ ++ + Y ++ + + F + R + +G Sbjct: 895 CMLAEQQRIVLSYGDWRHARSMQTALDEIASTHADTDPQFAEVGAVVAMSRTRLLLAMGL 954 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 A I L+ ++ L + L + GR+++A + AL R G Sbjct: 955 AREALIALDAARPFIGAMSNGRLLAVSDFLQTRALEALGRRAEAHACMQSALAACYRLGL 1014 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 + EGE + L + +E R + + + + + Sbjct: 1015 HRTLIEEGEGLHGILLRAGVGGGAALVEYVRGLMGECPVLESAGVTWPPIPIESNDEGVG 1074 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 P+ + LT+RE +V+ L+ SN++IA L ++ T+K +++N++ KL Sbjct: 1075 GPKDDMPVPV--LTRRELEVIALLEQSMSNKRIALTLNISVQTVKWNLKNIFVKLQ 1128 >UniRef50_B4WXQ1 Transcriptional regulator, LuxR family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXQ1_9GAMM Length = 848 Score = 356 bits (914), Expect = 2e-96, Method: Composition-based stats. Identities = 166/879 (18%), Positives = 311/879 (35%), Gaps = 56/879 (6%) Query: 33 RLALITSPAGYGKTTLISQWAAG--KNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHC 90 L L+ +PAG GK+TL++QW A + + L D+ RF + A Sbjct: 2 PLTLLLAPAGAGKSTLLNQWQAQPGERHVVQMGLQRADDDPVRFLRRFAEKTRAAVPAFD 61 Query: 91 AICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQP 150 M +S+ L+ L + PL++V DD+ I + + + P Sbjct: 62 -TSWFMPFDVSELPPSSIADSLYDALQQVALPLFIVFDDFQHIQSEETLSVIATLLADPP 120 Query: 151 ENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSR 210 +N+ L++ SR P ++ LR+ D++LEI + L E + +E Sbjct: 121 DNVHLIIASRTQPLFDVSRLRLDDKVLEISAVDLKVRRSEVSELNQRLGGEALEEQALDH 180 Query: 211 ICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHF 270 + GW +++ L+ ++ + + + DY VL + + R Sbjct: 181 LMAITEGWVAGVKIALLAGIRSGMQ----TLQDFNASQPEIMDYFGHAVLKGLPDSARTL 236 Query: 271 LLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQ 330 ++SA+L ++N L + ++E+ + LFL + + YH L +FL+ Sbjct: 237 FMQSALLDTVNAELGDEILQTRQSARLIDELTSRELFLVPVPGKPASYRYHALLRDFLQA 296 Query: 331 RCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSEL 390 R + E+ + IHR A ++ G +A+ HA GDA + + L Sbjct: 297 RLKIEMPDCIVPIHRRATRYFIKTGNFEQAVWHAWRTGDAALFGNCLEKSFEFWLQEGYS 356 Query: 391 SLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAE 450 S + E + L +++L +L + R+ L + + +E H Sbjct: 357 SHILEWAETLDDETILGRLELAAPLISTLTLSRRFFRARYYLDALKEQDFSGKEARYHHS 416 Query: 451 --FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 508 + L + + + D A L+L G R + +++ G L +L Sbjct: 417 QTVDFLELHLQLFQHDTDFM-EGANLSLLMESSGHRDIRAFSLAMVAYYHLQHGRLESAL 475 Query: 509 ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 568 A Q + + A ++ + + G + A + F P Sbjct: 476 AFSSQARDVLLRLGQRFTAGYAGLITALANQQLGHIGEAVAFIVENFNNTRR----DCPT 531 Query: 569 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ-CLAMLIQCSLARGDLDN 627 +L+ RL+EA+ + ++SS + + L + +G + Sbjct: 532 WSLWATGMVVVLYDQNRLEEAQQVCEDLLPMVSSASATEVISTVYLTLSRLQHLQGKQKS 591 Query: 628 ARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF- 686 A L +L +L G Y ++S A +TG+ + + + Sbjct: 592 AERMLEKLLGILQLGNYE-RFVSMAVLEMTRQALLTGNWQRLDVVVDRFELAAWVEENLE 650 Query: 687 ---------LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQL 737 + + + G AE +L L + + R ++ L Sbjct: 651 GEASMYSQSWERRGLAAVYWLMAHGRNAEAETLLRRLLAVVKGAGIK---TRASIIEANL 707 Query: 738 YWQAGRKSDAQRVLLDALKLANRTGFI---SHFVIEGEAMAQQLRQLIQLNTLPELEQHR 794 + + A L R G + E +A + +L L Sbjct: 708 LVLTSKAATATEQSRKVDALITRYGLLNINRSVFDEAPGLAGLMNRLWSAGQL------- 760 Query: 795 AQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSP---LTQREWQVLGLIYSGY 851 F + N + + P LT +E ++ L+ SG Sbjct: 761 --------------LLPDFYTGLFPAVFNATPASDPLEVDPDSVLTPKENEIFELLQSGM 806 Query: 852 SNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 SN QI+ V+ TT K H++N+Y KLGV++R +AV A Sbjct: 807 SNAQISECTGVSVTTTKWHLKNIYSKLGVSNRTEAVLRA 845 >UniRef50_B9JN67 Transcriptional regulator protein n=2 Tax=Agrobacterium RepID=B9JN67_AGRRK Length = 897 Score = 355 bits (911), Expect = 5e-96, Method: Composition-based stats. Identities = 187/919 (20%), Positives = 342/919 (37%), Gaps = 47/919 (5%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GK 56 ++ ++ P + V R LLA L + RL I +PAGYGKT+L +QW Sbjct: 2 IISQTRFQPPSAGNEHVRRRGLLALLQRSGLRRLTTIVAPAGYGKTSLAAQWYEMFKSQG 61 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 W LD D Q RF L+ ++Q+ E + SL + L L Sbjct: 62 AQAVWIPLDPEDGDQSRFLLALLESLQKLLPD-----ERKGSDANSMPVASLLSALVTRL 116 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQP-ENLTLVVLSRNLPQLGIANLRVRDQ 175 P+ L +DDYH N M + ++ V++SR+ P+ + LR+ + Sbjct: 117 RRIREPIVLFLDDYHFAQNDATESLMAKLLAASDLGHVKFVLISRSPPRFPTSALRLNSE 176 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 L +IG L+F+ EA++FF R + + + + S + GWA ALQ++ + N S Sbjct: 177 LKQIGVADLSFSDMEAQEFFGSR-AKKLTSEQISELNQRTEGWAVALQMVRVLVNDNMDS 235 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + + + + YL ++V ++ +HFL +SA L +++ LI V+ ++N Sbjct: 236 SA--ILSSFDGSNAEMGRYLSEQVFSSLPEDIQHFLTESAALPAVSRPLIGAVSAQDNAV 293 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 + L + +D G W YHP+F ++L++ + + +I R AA + + G Sbjct: 294 ALFNRLGDHALPIAVLDGQGTWIRYHPVFNSYLKEEAERLG-IDTRQILRKAAHWFESGG 352 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWS----LFNHSELSLLEESLKALPWDSLLENPQL 411 A+ HAL A DA + I+ +L + + +L + P Sbjct: 353 DCDAAVRHALLAADATLAAQIIERAGGWRRVYAKTRGGTALFQTLIAKAADINLADFPLT 412 Query: 412 VLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERL 471 L + + + N LA AE + + + +R +++ L Sbjct: 413 TLGLSVINAKAGQLDAANHYLALAERAA-ATMGEKLAQDLRVVRVLLSLYTDRWATTADL 471 Query: 472 AKLALEELPPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 + L + R +A ++L + +L R+L Q + + R A+ Sbjct: 472 SALEADLSQDSGMEPIHRALALNMLSYNFLIRTDLERALHYGQLSIRSFRDAGADFGAMH 531 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + F G TA + + + ++++LL A Sbjct: 532 LYTHIGQAAFFSGDSATAADAYRSLITEAQANIGKGCDLDAISHVLQSELLSMNGDRQAA 591 Query: 590 EASARSGIEVLSSYQPQQQLQCLAMLI--QCSLARGDLDNARSQLNRLENLLGNGKYHSD 647 A + L + L ++ + G++ A + ++ + + Sbjct: 592 AAVLAWALPHLERHDTWFDLLAAGIMAQQRILRLNGEIMAAHAAIDSARSAAKRRGF-DR 650 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF----------ANNHFLQGQWRNIARA 697 I + R +GD A + + A N R Sbjct: 651 LIRLIDGERAALLLASGDINEAVRYAEVSGFGAESISSDTANDFAVNLRGNVPALLWTRI 710 Query: 698 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 757 + GE A + L + + L +L G ++ A L + + Sbjct: 711 YLAQGEIARARSTFDRLIKCQSRELHVPRRIELGFLDIRLLLAEGDEATAAARLSEMMLS 770 Query: 758 ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENF 817 + + +IEG ++L QL +P++ R +R+ + Sbjct: 771 LPVADYRAILLIEGPEFGRRLCQLAASRGVPDVVMQRLERLQDVVAGASAQDSDLLSV-- 828 Query: 818 VERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQK 877 T LT RE VL L+ +G SN++I +L+++ T+K H+RN+Y K Sbjct: 829 -----------PTAATGGLTDRERSVLRLLSAGLSNKEIGRKLDLSNNTVKFHLRNIYAK 877 Query: 878 LGVAHRQDAVQHAQQLLKM 896 L V R AV A+ + Sbjct: 878 LNVTTRTAAVTMARDTGIL 896 >UniRef50_C8X673 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X673_NAKMY Length = 1003 Score = 354 bits (909), Expect = 8e-96, Method: Composition-based stats. Identities = 237/1003 (23%), Positives = 380/1003 (37%), Gaps = 116/1003 (11%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSG-ANNFRLALITSPAGYGKTTLISQWAAGKND-- 58 ++ +KL TV R RL L+ + RL LI++PAG+GKTT ++QW + Sbjct: 5 ILHTKLYAARVRGRTVPRPRLTEHLTDFLSGGRLLLISAPAGFGKTTTLAQWVQTLSADA 64 Query: 59 -----------------------------------IGWYSLDEGDNQQERFASYLIAAVQ 83 + W SLD DN+ RF +Y++ A Q Sbjct: 65 ATGDRTGTGPAPGQDTGSRGPGDPAVAQTTNPPAVVAWLSLDPADNEPGRFCAYVLTAFQ 124 Query: 84 QATNGHCA----ICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 A+ G A E A A T + A+L ++A+ + LV++DYHL+ +P +H Sbjct: 125 HASPGLGADQLHRLEQQAPATTAADATPMIAELLNDIADLPHDVVLVLEDYHLVESPDVH 184 Query: 140 ESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRL 199 + + + + H P L + V +R P L +A +RVR +L EI + L FT EA + + + Sbjct: 185 DQLAYLLEHAPPQLHVAVSTRVDPPLPLARMRVRGELTEIRAADLRFTAAEADTYLNGLM 244 Query: 200 SSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEV 259 + + + + GW ALQL ALS + A A + ++ DYL +EV Sbjct: 245 QLGLTQPQVTALGSRAEGWIAALQLAALSMQGRDDVAAFIADFT--GDDRYIVDYLAEEV 302 Query: 260 LDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFC 319 L TR FLL +A+L + AL +TG ++G+ LE++ER +FL +D+ W+ Sbjct: 303 LARQPEQTRRFLLHTAVLDRLTGALCDALTGRDDGRRTLEQLERANMFLVALDNQRRWYR 362 Query: 320 YHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLN 379 YH LF + LR R + +P++H AA+ + P +AI HALA + D++ Sbjct: 363 YHHLFADVLRARLLDQQPTLIPQLHLAASRWYADDQQPEDAIRHALAGSHMDLAADLIEQ 422 Query: 380 HAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEI 439 + + LK LP D + P L + A + V LL +AE + Sbjct: 423 AIEQSLRERTEATMRGWLKQLPPDVVAARPALGIALAGATLATGETAGVAQLLNQAEQRL 482 Query: 440 KDIRED------TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSV 493 + + R+ +A + A+LAL+ L G R A+++ Sbjct: 483 NAPGDAHADTTGRLPGWVEVYRSGLAQAQHDTRGTLTHARLALQRLDAGDSTGRAAASAL 542 Query: 494 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 553 +G G L + + + L + ++I QG LQ+A +T + Sbjct: 543 VGLASWATGNLQGAHEAYTAAQSAFKATGYLTDVLGCAVVLADIRKTQGRLQSALDTHLE 602 Query: 554 AFQLI---------------------NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 A Q + L L A + EA Sbjct: 603 ALQYVTTKLHAAEPTQTPPRQGPADTGAAELTGLRGIVDTYIGIADIHRERGNPTEATRL 662 Query: 593 ARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 R S PQ Q + + Q + A GDL+ A L + L + + Sbjct: 663 LRLAESAGESAGLPQAQYRRHVVQAQIARADGDLETADQLLQNAQRLYVADFHPD--VIP 720 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-LQGQWRNIARAQIL---------- 700 R W G W R A F + + + RA + Sbjct: 721 VAATRARLWVAQGRLDGVFAWARGRALALSDEPAFTTEYEHLTLVRAHLAHLSADLSAHL 780 Query: 701 ----------LGEF------EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG-- 742 G+ + L+ L +A + + L+ A Sbjct: 781 RHHHAADGHPAGDPNRAPGVDQVLGFLDRLLTHAEAGGRTGTVIDALIQRAIALRLAAGS 840 Query: 743 -------RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRA 795 ++ R AL LA G+ F+ EG + LR ++ E Sbjct: 841 RGNRPGQGTDESLRTFHRALDLAEPQGYARTFLDEGSVVTDLLRDALRAGLNSEYVTALL 900 Query: 796 QRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQ 855 + Q H + + L+QRE VL L+ + S Sbjct: 901 NQ------QPHSTTPDLTGTVAPTDAGPQTDRRMEVVVERLSQRELDVLRLLATDLSGPD 954 Query: 856 IAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMG 898 IA L V+ TI+TH +NLY KLGV +R+ AV+ A++L + G Sbjct: 955 IARHLVVSLNTIRTHTKNLYAKLGVTNRRAAVRRAEELHLLQG 997 >UniRef50_Q390G0 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=6 Tax=Burkholderia cepacia complex RepID=Q390G0_BURS3 Length = 922 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 216/903 (23%), Positives = 368/903 (40%), Gaps = 31/903 (3%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-- 58 +L+ +KL+ P V R +L+ + RL L+ +PAGYGKTT++++W Sbjct: 20 VLVRTKLA-PASARGIVSRIARFGRLARGLDRRLTLVCAPAGYGKTTVLAEWRHALVATN 78 Query: 59 --IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W SLD+ D+ F+SY++AA+ AT G + + + R L +F +L EL Sbjct: 79 VKVAWVSLDQDDDNASIFSSYVVAAIVDATGGVGGRAQRLLRDRALIPLKIVFDELLNEL 138 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 L L++DDY + +PVIH++M +R+ P NL +V+ R+ P L ++ RD+L Sbjct: 139 EVAGVELVLMLDDYDRLASPVIHDAMFELLRYAPSNLHVVLSCRSAPALPLSYFESRDEL 198 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 + + L F E + FF+ P+ A R+ GW + LQL AL+ R + +A Sbjct: 199 VRVDEDDLRFDEAETRAFFERVAGKPLSAENVGRLRAATEGWVSGLQLAALALRDDNDAA 258 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + ++ YL + V+ V A RHFLL +A+L M AL +TG ++ Sbjct: 259 R--VAEQVSHARAGIAAYLNENVMTQVPDAIRHFLLCTAVLDRMTPALCDALTGRDDAVA 316 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 LE + LF++ +D + YH LF +LR+ + +HR A+ + A+ Sbjct: 317 CLEWLSAHNLFIRSVDGGRRSYRYHALFLQYLREELALRRPDAVAALHRRASTWYAAERQ 376 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +A+ HALAAGD + A L S++ + + + LP +L +L + Sbjct: 377 WPDAVRHALAAGDFDAAAGWVEACAMKLIAASDVRTVLDWVSRLPEPALAGRLRLRIAHV 436 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIR---EDTMHAEFNALRAQVAINDGNPDEAERLAK 473 W + + + L E +I R + E +R+ +A E+ L + Sbjct: 437 WALALSMQMVDARRALEAIEADIDARRLGTDAITATELLGVRSLIAGLSDRSIESLELGE 496 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 L PP + + + L G L +L L + E+ A H+ ++ Sbjct: 497 RVLAAGPPAGSWVEQIGQTTLIFGFGYAGRLDDALDLRARAERAASGHEPLFAHVYRQNM 556 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 F G L A +T E A + + + + W + + Sbjct: 557 SGLAEFVAGRLHDASKTFETALRGAERSAGRLSAATALSAGYLSAIYYEWNDWPKVREAQ 616 Query: 594 RSGIEVL-SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL-GNGKYHSDWISN 651 R ++ + L+ + G+ A L+ +++ Sbjct: 617 RDRFDIAMQACSLGPLLRFMQTAAVLQFRSGNEARAHEMLDEADHIACSRQWLRLRVACM 676 Query: 652 ANKVRVIY----WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL--GEFE 705 A VR+ A L PE A++ Q ARA++LL E Sbjct: 677 ATGVRLHVSAGKLTQAHRVGRALAALVSAEPPEVASSFVETWQMAQSARARLLLADARAE 736 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A V+ +++ + + +L QAG++ DA VL AL+ G + Sbjct: 737 EAAGVMATVHDVLAARGFDWFAAQAAVLRAVALEQAGQEDDALAVLAPALEYGQGNGLVR 796 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 FV EG + ++++ R L + R A Sbjct: 797 TFVDEGAVAERLTARVLKRADRFPAVGAWYLRELARAFEADRASNAAPAAR--------- 847 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 L+ RE ++L + G SN++IA L VA TIK H++N+++KL V R Sbjct: 848 ----PGTAGNLSAREVEILDYVARGLSNKEIARALRVAPETIKWHLKNIFEKLNVTSRIQ 903 Query: 886 AVQ 888 AV+ Sbjct: 904 AVR 906 >UniRef50_Q5Z362 Putative serine/threonine protein kinase n=1 Tax=Nocardia farcinica RepID=Q5Z362_NOCFA Length = 1145 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 166/804 (20%), Positives = 314/804 (39%), Gaps = 14/804 (1%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKNDI 59 +K P V R RLL L RLALI +PAG+GK+T+ +QW A + Sbjct: 334 ATKFRPPTPARAPVPRPRLLEVLRAGGRRRLALIHAPAGFGKSTVAAQWRAELTDQGVPV 393 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W LD D+ + F ++L+ A+ + A + ++R ++ + + L E+ Sbjct: 394 AWIGLDHDDDNEVWFLAHLLQAIHRVRPAIGAGLDQALEERPADAVAFVISTLIDEVHAG 453 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 + +VI+D+H IT+P H +M + + +L VV SR+ L + ++RV D+L+EI Sbjct: 454 GETIVVVIEDWHRITDPGAHRAMAALLDNGCHHLRFVVTSRDQSGLPVNSMRVHDELVEI 513 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 GS QL T E Q R + + +I GW A+QL++L+ R N Sbjct: 514 GSAQLRLTRAETGQILVERNGFELTDKQVEQIHRVTDGWPAAVQLVSLALRGNPDPQRLI 573 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 + G + + +YL + VLD ++ FL ++ +N +L ++ + ++ L Sbjct: 574 SALPEGGHG--IREYLAENVLDTLEPRMLDFLTAISVTERVNASLAAALSEDSEAELLLA 631 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + E++ LFL+R++ EW+ PLF LR R + AA+L +HR A+ + F + Sbjct: 632 QAEQRELFLRRIEHDPEWYRMQPLFAEHLRARLERTDAAKLRALHRKASRWYAEHQFLRK 691 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 ++ HALAA D + D++ L + S L+ L ++ LP + +L++ A Sbjct: 692 SVDHALAATDLKLALDLVEGGGMDLIDGSRLATLLGTVSKLPVQQVTSRSKLLMAVARAN 751 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDT----MHAEFNALRAQVAINDGNPDEAERLAKLA 475 + + G + L + + + + E L A A+ D Sbjct: 752 VNLQQSGAARSALGKLTNMLPGGSGEDETNRQRCEAAVLAAADAVTRDQTDGVLDQVADC 811 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 L+ ++ A +V+ V C + + + + + + ++ L Q Sbjct: 812 LDNPDDLPAWTVSTAANVVSYVRLCTFDFDGARQIQEWAQPYHEKSKDPLGTVFGLCAQG 871 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 + Q + A + E+A+++ + + + + +L + L A+ Sbjct: 872 AAAYEQLDIPGANDYFERAWEVAHSRAGPRSHGVRVASAMLGELKYRAGDLATADRLLDE 931 Query: 596 GIEVLSSYQPQQQLQC-LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 ++++ L + RGDL A ++L E + + ++ Sbjct: 932 SHQLVTRVGTVDFLLATFVTGARVKAVRGDLATAAARLEEGERIAREYE-LPRLGAHVRA 990 Query: 655 VRVIYWQ-MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPA-EIVLE 712 R+ + + A A + A + A Sbjct: 991 ERLRLGLPVEPATESGPGPGLRRATGVAALIAEAEETAAVRAMLAARPSHTDDAPVRRAR 1050 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 L LLL + +G +A +L+ A ++ R G+ + G Sbjct: 1051 ALYGRTTEQGRPRAELDTALLLAETLAASGWVGEATAMLVPAAQVCARLGWPRPLLDAGP 1110 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQ 796 + LR L L + Sbjct: 1111 RVVAILRVLRGELHLSPENADETR 1134 Score = 49.9 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 21/254 (8%), Positives = 54/254 (21%), Gaps = 3/254 (1%) Query: 583 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 642 + D ++ ++ L D D AR + Sbjct: 798 RDQTDGVLDQVADCLDNPDDLPAWTVSTAANVVSYVRLCTFDFDGARQIQEWAQPYHEKS 857 Query: 643 KYHSDWISNANKVRVIYWQMTGDKAA---AANWLRHTAKPEFANNHFLQGQWRNIARAQI 699 K + ++ A +H ++ + + Sbjct: 858 KDPLGTVFGLCAQGAAAYEQLDIPGANDYFERAWEVAHSRAGPRSHGVRVASAMLGELKY 917 Query: 700 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 759 G+ A+ +L+E ++ + + L + ++ G + A L + ++A Sbjct: 918 RAGDLATADRLLDESHQLVTRVGTVDFLLATFVTGARVKAVRGDLATAAARLEEGERIAR 977 Query: 760 RTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE 819 + + R + + A Sbjct: 978 EYELPRLGAHVRAERLRLGLPVEPATESGPGPGLRRATGVAALIAEAEETAAVRAMLAAR 1037 Query: 820 RLLNHPEVPELIRT 833 R Sbjct: 1038 PSHTDDAPVRRARA 1051 >UniRef50_C0GFG5 Transcriptional regulator, LuxR family with TPR repeats n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GFG5_9FIRM Length = 534 Score = 352 bits (903), Expect = 4e-95, Method: Composition-based stats. Identities = 136/516 (26%), Positives = 230/516 (44%), Gaps = 15/516 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLS------GANNFRLALITSPAGYGKTTLISQWAAG 55 ++ K S P + + + R +L L + L L+++PAG+GKTTLI W G Sbjct: 5 ILKIKTSVPPQGANILPRPCILESLDHGLWAAEGFTYPLTLVSAPAGFGKTTLIRSWLTG 64 Query: 56 KND-IGWYSLDEGDNQQERFASYLIAAVQ----QATNGHCAICETMAQKRQYASLTSLFA 110 + D WY+LDE DN+++RF YLI+++Q G + + A + + S Sbjct: 65 REDRAAWYALDEADNKEDRFWLYLISSLQTLKADLGEGPMEMLRSNALSAESEDIESFLV 124 Query: 111 QLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANL 170 L EL P LV+DDYHLI N IH++M FFI + P L L + +R+ P ++ Sbjct: 125 TLLNELFALDKPYILVLDDYHLIENVRIHKNMAFFIENLPPTLHLAITTRSDPPWPLSRW 184 Query: 171 RVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSAR 230 R + ++ E+ QL F +E + + A+ + + + GW LQL A S Sbjct: 185 RAKRKMAELRLDQLRFNEEETGRLLTETKGLALSEAQLNTLHEKTEGWIAGLQLAAYSLT 244 Query: 231 QNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG 290 N + N ++ ++L +EV A R FL++++IL L +TG Sbjct: 245 SN--NNKDRFIHEFAGNQRNVFNFLSEEVFTRQPEAVREFLMQTSILNRFCAPLCDAITG 302 Query: 291 EENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES 350 + L +E LF+ +D+ G W+ YH LF + LR + + E+H A + Sbjct: 303 SNDSAEVLSALEAANLFVIPLDNQGIWYRYHHLFSDLLRHQLSSRQPEMITELHNKAGKW 362 Query: 351 WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ 410 + SEA++H L + + +IL ++ + +L+ L + P + L + P Sbjct: 363 FFEANELSEAVYHFLTVKNLDKVAEILHANSKEIVESEGPNLIVRCLDSFPDEILRKYPL 422 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIR--EDTMHAEFNALRAQVAINDGNPDEA 468 L + +A + EV LLA AE + + ++A + +A Sbjct: 423 LAVYKALYHLMRKGREEVGALLALAEENADEKLKNHREYSSIVALVKAYHNLFSHKIPQA 482 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL 504 A+ AL LP ++ RI + G+ G+ Sbjct: 483 LEHAQEALRLLPADNYFLRINIAIISGDTQLFLGDP 518 >UniRef50_A1U449 Regulatory protein, LuxR n=2 Tax=Marinobacter RepID=A1U449_MARAV Length = 891 Score = 352 bits (903), Expect = 4e-95, Method: Composition-based stats. Identities = 177/904 (19%), Positives = 310/904 (34%), Gaps = 59/904 (6%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANN-FRLALITSPAGYGKTTLISQWAAGKNDI--GWY 62 +L P T+ R L + A RL + +P GYGKT + A D+ W Sbjct: 34 RLRVPSVPGDTLARPNLDRIICQALQPGRLLQLEAPGGYGKTHALVSALASAPDVNVRWI 93 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP 122 SL+ GDN R S L A+ + E + + + Sbjct: 94 SLNAGDNAPSRLLSILAIAL--------GLAEVLPPNGGTFEDHMTMLLVNRGRQAREAR 145 Query: 123 LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 LV+D+ H +TNP + + + H P L++ + SR L + +G Sbjct: 146 EVLVLDNVHYLTNPAVSGLLHQLVTHLPSGLSVAMASRLSVPFESHTLELNGNNTRLGPD 205 Query: 183 QLAFTHQEAKQFFD-CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 L F+ E +FF R S I + + GW T L L +Q Sbjct: 206 TLEFSRSETFEFFAKARSDSLITSVAIDHLFGLTEGWPTPLALYRRELKQGGE------- 258 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG-EENGQMRLEE 300 R A + +L D + + A L A + S +D L + M E Sbjct: 259 RRALHETPSVERFLKDCIAAQLGSAQLKSLRAIAEMDSCSDELFFAIEPSVSESGMPPSE 318 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +GL L+ + G W+ +PL +L+ + A+ + + EA Sbjct: 319 AADRGLPLKPVPGRGRWYRLNPLLQAWLQTPVMGGYITRM----LMASRWFEQRQQFPEA 374 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 + +A+ AGD+ + I +L + + L K LP + L + +L ++ W+ Sbjct: 375 LKYAVLAGDSDEVVRIASESTEALLLGQDTASLLSLRKNLPAELLERSARLRIVYGWVHA 434 Query: 421 SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP 480 ++ + LL D A AL+A + +G A +A+ AL + Sbjct: 435 IGGQFQQAKQLLED----FNDRDRKEHEARIYALKAFILRGEGFVQPALAMAEKALAKGG 490 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 +++V V L G + + ++AR+ ++ + I Sbjct: 491 MSTQ-AQLVTQIVRSSALCAAGCFQEARDANRIASKLAREAGDSGSEALAVYAHARIELG 549 Query: 541 QGFLQTAWETQEKAFQLI-NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 599 +G L+ A + E L +LW RL EA+ + Sbjct: 550 KGALRHAEQLLRTGLDTAMQELSRPARIGETRLQLNLVLVLWHQGRLTEADRLLVNCARH 609 Query: 600 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRVI 658 + L +A+ + A+G +D+A + R E + + S ++ ++ Sbjct: 610 AEQTRDLGLLLAMALRVLMCRAQGRMDDAFVWIGRAERTMHTWQVDESLYLPVLEALKAS 669 Query: 659 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR------NIARAQILLGEFEPAEIVLE 712 W G + +A + RA + G+ A L+ Sbjct: 670 CWLAQGQQESAMQAIAKLEPYRKGGCVPELFPMMPGLLDCLQVRADMANGDLVRAREHLD 729 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 ++E LL L A++ L + A+R FIS F + Sbjct: 730 AVSEKYEGGMPWGLQLHAGLLDAVLLEAEKGLPAARKRLESVVAQASREHFISPFAELMK 789 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 + + + + + + E A Sbjct: 790 ELGPLMDKCYRHLDNGDFTAALGRLFGCEPVAPAADPLA--------------------- 828 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 P++ RE VL LI G SN++IA +L ++ T+KTH R + KL V R A+ A++ Sbjct: 829 -EPISDREQGVLELIAQGLSNQEIADKLHISLHTVKTHARRINAKLDVKSRTQAIVRARE 887 Query: 893 LLKM 896 L + Sbjct: 888 LGLL 891 >UniRef50_A2SP76 ATP-dependent transcriptional regulator-like protein protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SP76_METPP Length = 901 Score = 344 bits (884), Expect = 7e-93, Method: Composition-based stats. Identities = 180/897 (20%), Positives = 323/897 (36%), Gaps = 46/897 (5%) Query: 28 GANNFRLALITSPAGYGKTTLISQWAAG----KNDIGWYSLDEGDNQQERFASYLIAAVQ 83 + + +++PAGYGK+TL+S+W + W +D D ++ A L+ A Sbjct: 25 RTVSRPVFAVSAPAGYGKSTLLSEWREEVIALGYRVVWLLVDGDDQDGDKLAIDLLHAFS 84 Query: 84 QATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMR 143 +++ ++ L E+A L +DD H +++ +R Sbjct: 85 ---PADTERSQSLVNGVGDRGKRAVIMALVAEMASRQERTVLFVDDVHWLSDNTAATLLR 141 Query: 144 FFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPI 203 IRHQPE + LV+ R + + +L + QLAF + Q S Sbjct: 142 PLIRHQPERMALVLSGRANLSSLSSEAALDRRLHVVDHIQLAFNQSDIAQILRQ-YSVKP 200 Query: 204 EAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNV 263 A I + GW ++LIA++ + + + + +S+YL + +L + Sbjct: 201 RQALVQAIYERSEGWPAIVRLIAMTL-HSDEESQNNLLQGLLERPQAISEYLSEVLLSQL 259 Query: 264 DLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPL 323 LL A+LR N L+ T + + L E++R+ L + R +D + HP+ Sbjct: 260 PDRAAQLLLCLAMLRRFNGRLVAAATEMSDAEAVLAELQRRALPISRSNDAMLPYALHPI 319 Query: 324 FGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWS 383 +FL R + + ++ A G AI +L G+ ++ ++A + Sbjct: 320 VRDFLLIRIRRQGINQIGPYVERALAWLTDNGRIDAAIDLSLDVGNVKNAAALIDHYART 379 Query: 384 LFN-HSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLA--------- 433 + + LP ++L + P++ + QAW + R E +LA Sbjct: 380 MARYQGRHATFLYWANKLPLEALAQFPEIRVKQAWSLAVLRRAAEAKAVLAKLIIEFAEP 439 Query: 434 -----RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI 488 A H D R + R V +A A+ L P Sbjct: 440 TNRPDAASHGFDDQRLSRIRQAVELERCTVPTLCDRAQDAAPYARSWLSRWPDAEPIDLA 499 Query: 489 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 548 +A V+G + SLA ++ ++ + ++ W + + +L QG + A Sbjct: 500 IANIVVGCGAMADTDFEVSLAHLRTAQRYVDECKGYYVKAWVDMWLATVLSKQGRYRQAL 559 Query: 549 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI-EVLSSYQPQQ 607 ++A + + + L IRA LL+ RL+EA A+ G+ ++ Sbjct: 560 YECDEAVTAVATHLGGETAVEIMLHAIRAPLLYEMNRLEEAGAALEHGLTALIEQTSVDS 619 Query: 608 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 667 + L + A+G +A L E + ++ A + + + Sbjct: 620 IIMGHVALARLQNAQGSHLDALETLAEGEVIGRTHGLSRLVVALAAERIDLLLRHRELGQ 679 Query: 668 AAANWLRHTAKPEFANNHFLQGQWRNIA-----RAQILLGEFEPAEIVLEELNENARSLR 722 A A WL E + + A R +L G A + E + A Sbjct: 680 AQAQWLELQNFSECGPADAFESAMSDKAPRIESRIALLKGNNSVACELTEPALQRAIRTG 739 Query: 723 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL-RQL 781 LL+ A L A+++A G++ FV EGE M L Sbjct: 740 QKRKQVELLLIRALAAQAGKEHERAGDALQRAIEVAMSEGYVRVFVDEGEQMRLLLISAA 799 Query: 782 IQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREW 841 ++IL + LT RE Sbjct: 800 GLAARASSPTGEYLRQILAAFSVQKSDPKTSAFIA---------------GAESLTGREL 844 Query: 842 QVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMG 898 ++L + S SN Q+A L + T+K H++N+Y KL V +R AV ++L + Sbjct: 845 KILRRLQSDLSNRQLADTLYITEGTLKWHLKNIYGKLNVTNRLTAVTAGRKLGLLDS 901 >UniRef50_Q2B993 Transcriptional regulator n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B993_9BACI Length = 1077 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 144/818 (17%), Positives = 294/818 (35%), Gaps = 31/818 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIG 60 +I +KL P + + R RL AK+ + L ++ S AGYGK+T ++ + + Sbjct: 3 VIKTKLMVPPVKEGYIRRARLSAKMKAVAEYPLCIVESGAGYGKSTALALFVHDEKLPCS 62 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHC----AICETMAQKRQYASLTSLFAQLFIEL 116 WYS+ D+ F S L+A+V+ A +I E + + + + SL + E Sbjct: 63 WYSISSEDDDIIPFLSCLVASVRLAHPDFGTEILSILEQLDRYVKEEEIRSLASLFLNEA 122 Query: 117 AEWHSPLYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLGIAN-LRVRD 174 A + L++DD+H + + I+ M + H P NL L++ SR+ P + +RV D Sbjct: 123 ALHGENILLILDDFHQVEHSYTINCWMETLLEHIPPNLHLIISSRSRPGWKLLKKMRVTD 182 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +LLEI + L + E + + I+ + RIC GW A+ +I Sbjct: 183 KLLEIKKEDLVLSRDEVELLLNELYGISIKQGDLDRICLATEGWVIAVGMIGQQLTDKKS 242 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 ++ + + + L YLV EV + FL +++I M + L V G Sbjct: 243 ISNLFGA--SSGSLADLFQYLVTEVFAKQPPLIQQFLEQTSIFDDMTEELCNEVLGIAGA 300 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 L+++ + LF+ ++ + + YH LF FL ++ + ++ A ++ Sbjct: 301 GAMLQQLTEKNLFIHKV--GEKVYRYHALFKEFLEKQLKAGQPHSYRLLNERCARHFVRS 358 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 +A+ H G + IL + + +L L + + +P + + L Sbjct: 359 LQWDDALKHFEKIGSTEEMASILSDQGLRMLETGKLGSLSDRIAGIPGQTKDRFYPVWFL 418 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + +++ + Y E R+ ++ A +A++ ++ P +AER+ Sbjct: 419 EGEVLRYRSSYQEAELAYDRSATGADGKKDLIWKARALEGKARIYLDTIQPHKAERILSQ 478 Query: 475 ALEELPPGWFYSR---IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 A++ R +L E L G+ ++ M++ E M Q + Sbjct: 479 AIQLKEGDIRGGRDEPARLYHLLAENLINAGQAAKAEKWMERAESMGHQ-------MLDK 531 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + + G L + + A + + H + A + EA+ Sbjct: 532 SLLARLYLRTGKLAESRKIL-MAGRKTKSEGKPLPKSHRETDLLLALIEAFTGNGAEAKK 590 Query: 592 SARSGIEVL-SSYQPQQQLQCLAMLIQCSLARGDLDNARS--QLNRLENLLGNGKYHSDW 648 ++ GI+ S+ P + L + G+ D+A + +++ + Sbjct: 591 LSQEGIQQGISTKAPFVEACGWIRLGHAAQLLGEYDSALAEKCYRTSLDIMDRLEIERGK 650 Query: 649 ISNANKVRVIYWQMTGDKAAAANW--LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 706 + I + D + + + + ++ + F Sbjct: 651 AEPLMGL-CILYGERNDYSKSMDAGKAGLQETERVKDMWLSSLILISMGISSAYGSRFGE 709 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 A+ + + + L Q G + D + L + Sbjct: 710 ADKHFDLASSMLQQCGDDYGCMLALFWKAYSAHQQGLQEDFEHSFKSFLSQMQWGDYEFF 769 Query: 767 FVIE---GEAMAQQLRQLIQLNTLPELEQHRAQRILRE 801 G Q ++ + R+L+E Sbjct: 770 LFRRTLFGPRDLQMFAPILIEAEKSGIMPDYTARLLKE 807 >UniRef50_A5V8I9 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V8I9_SPHWW Length = 899 Score = 343 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 191/912 (20%), Positives = 350/912 (38%), Gaps = 42/912 (4%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLI----SQWAAGK 56 MLI +KL+ P R + RE L+ +++GA RL ++++PAGYGKTTL+ +QW G Sbjct: 14 MLIRTKLAPPNRTIDLLWREALVGRITGAAE-RLTVLSAPAGYGKTTLLSQCHAQWRRGD 72 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + WYS+D+ + ++F +YL+AA+ +A E + + + + + L Sbjct: 73 VAVAWYSVDDSKFESDQFFAYLMAALHRAGLPLPYSQEAIDAGLPGLAAEAAARAIVVAL 132 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 P+ L+IDDYH I +P + + + I P + +++ R +P++ +++LRVR QL Sbjct: 133 EASEEPVRLIIDDYHRIASPATNRFLDYVIERMPNHAAIIMAMRGMPEIALSSLRVRGQL 192 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 L + + F+ EA +F + + + + GW ALQL+ L Sbjct: 193 LLLEQNDIRFSDSEALRFLSDQS----SKVDWGELIERTQGWPAALQLLRLWLAGR---D 245 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 +S L+DYL ++V + + FLL+++I + L ++G ++G Sbjct: 246 QVDTLEHLTRRSSDLADYLAEQVFSGLPADVQKFLLETSIAERICTGLGDAISGRDDGAD 305 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L+++ R+ L + +DD G W+ +HPL FL + A L +H AA + Sbjct: 306 MLDQMRRRNLLVTPLDDDGVWYRFHPLLREFLYDMLARDSQARLDALHLRAAAWLAGENL 365 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 EA+ HA D I+ L + + S + P++ L + Sbjct: 366 LPEALGHAARVSDRTAATAIMEAAGGWRMAIRGGLALLRHVDEIDQVSPADFPRVTLGRV 425 Query: 417 WLMQSQHRYGEVNTLLARAEHEIK----DIREDTMHAEFNA--LRAQVAINDGNPDEAER 470 + R E +L R + + + + +E L A + + P R Sbjct: 426 YFAAQNGRLPEARAMLDRLLAVLPLDRVEATDPGLASEMLCNDLVAHIYEDRAIPAAYGR 485 Query: 471 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 + L R++ + +G+ ++ ++AR H + +++ Sbjct: 486 FLERQLAH-EGHDPTLRVLLHHLSCLASFDRGDDIWCRVHGEKALKLARSHQLPLLEVYA 544 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 G + A ++F+ N E + + A L+ L A Sbjct: 545 YQYLGLSQIRTGRRREAELYFRRSFEQANRHFGEGSAQVAVAISLLAYTLYLSGDLSSAT 604 Query: 591 ASARSGIEVLSSYQPQQQ--LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 S + V+ + + + A + G+L A + R + Sbjct: 605 ELLESAVPVIEVSEGWHEVFVAAYATQAWLAARTGNLAAAEQVIQRGRATAER-RGLPRL 663 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKP----EFANNHFLQGQWRNIARAQILLGEF 704 + +R W A L +P + + + LG Sbjct: 664 RYQLDLLRARIWLCLDRAELAGPLLAELGEPSAVFRERDRRLFCDYRVALTACSVQLGRP 723 Query: 705 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 764 + A ++ L + ++ +L AGR+++A + AL+ A G I Sbjct: 724 DEA--LVAALEADVAEAGSVALDIEMAILRAAGAVAAGRRTEAAHAVRQALEAAESEGLI 781 Query: 765 SHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 G + L + L R A + Sbjct: 782 GIVSQFGALLPPVLAAC--------------EESLHLFEPAQRSTVARLRQTTPAARRGG 827 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 +P +T RE VL + G S++++A L VA +TIKTH N+Y+KL VA R Sbjct: 828 TAIPPAASDIIVTPREIDVLRGLADGLSSKEMARSLGVAESTIKTHRINIYRKLNVATRS 887 Query: 885 DAVQHAQQLLKM 896 A+ A+ L + Sbjct: 888 RAISAARNLRLI 899 >UniRef50_C8XKI9 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XKI9_NAKMY Length = 897 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 216/902 (23%), Positives = 352/902 (39%), Gaps = 46/902 (5%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-----AAGKN 57 I +K+ P R V R RL+ ++ + RL L+++PAG+GKTTL+S W AAG+ Sbjct: 6 IATKMVVPSRRPALVDRPRLIERVRRGSRSRLTLVSAPAGFGKTTLLSAWLAENGAAGQR 65 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W SLD GD F +YL A++ A + + + + L +LA Sbjct: 66 RVAWLSLDAGDRDPAVFWTYLATALRSAVPEVGSQTLELT-AVDPLPIELVVTTLLNQLA 124 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 ++LV+DDYHL+ I M + + P ++ LV+ +R P L +A RVR +L+ Sbjct: 125 AAEGEIWLVLDDYHLVDGSDIGTGMTRLLDNLPAHVHLVISTRADPDLALARWRVRRELV 184 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI + L FT +EA + + + + + GW ALQL ALS + A Sbjct: 185 EIRAADLRFTVEEATDYLTQVAGLDLAGSAVAALEQRTEGWIAALQLAALSLQGRGDVAA 244 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 R + DYLV+EVL + R FLL++A+L + L +TG +G+ Sbjct: 245 FIDRFT--GTDRFVVDYLVEEVLAHQPPDVRDFLLQTAVLDELTGPLCDALTGRRDGERT 302 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L +ER LFL +DD EWF YH LF + LR R E ++ +HR A+ + Q P Sbjct: 303 LVALERANLFLVPLDDRREWFRYHHLFADVLRARLLSERPDQVTRLHRQASNWFDQQDRP 362 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 +AI HALA G+ D++ +L + + L + L ALP +++ P L +L Sbjct: 363 EDAIRHALAVGEVDRAADLIERALPALRRNRQDRQLRDWLTALPDETVRARPVLSVLVGH 422 Query: 418 LMQSQHRYGEVNTLLARAEHEI--------KDIREDTMHAEFNALRAQVAINDGNPDEAE 469 L+ + V L AE + T+ A RA VA G+ Sbjct: 423 LLLASGDLAAVQARLDDAERALTTGTAGHGGSAELRTLPATIAVFRASVAQARGDEPATA 482 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 A+ AL P +R A LG +G++ +L+ +Q L Sbjct: 483 AHARRALALAGPDDHLARGAAAGFLGLAAWARGDVRSALSTFEQAVTSLHAAGAVVDELS 542 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 + +++ A G A E A + ++ +++ + A Sbjct: 543 GTVILADLWSAAGRPGRARELYRDALRDAAAHRPAAARAEAEMLVGLSEIDCTAGDVTSA 602 Query: 590 EASARSGIEVLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 + E+ + + + + + A G A L + L G + Sbjct: 603 QQQLELADELSRGRPTTESRYRWFVARARVADATGAPAEALQLLTEAQRLYQPGYFP--A 660 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN-------HFLQGQWRNIARAQILL 701 + ++ GD W + A + + H + R Sbjct: 661 VRPIPAIQARVRIRAGDLGPVMQWAQQPAVADADEDAYLHAYQHLTVVRLRLAQARAGAA 720 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA-NR 760 G + LE + + A++ DL LL + G + A R L A A Sbjct: 721 GALDGTAERLERMAQAAQAAGRDGDLLEIHLLQALVRQARGDRPGAARALARAWAAAPEP 780 Query: 761 TGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVER 820 + F+ EGE + LR L + E + Sbjct: 781 DEYARLFLDEGEPVFDLLRDAATQTELAGPARRLL-------------------ELGADP 821 Query: 821 LLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 L+ RE +VL L+ S + +IA L V+ T++TH ++++ KL V Sbjct: 822 GRPPAPGTAGPLAVELSPREREVLRLLDSELTGPEIARTLFVSHNTLRTHTKHIFTKLDV 881 Query: 881 AH 882 Sbjct: 882 TS 883 >UniRef50_Q5P612 Putative regulatory protein, LuxR n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P612_AZOSE Length = 895 Score = 341 bits (874), Expect = 9e-92, Method: Composition-based stats. Identities = 175/903 (19%), Positives = 323/903 (35%), Gaps = 34/903 (3%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKNDIGW 61 K P + RLL +L L ++TS AG+GKT+L+ QW A + W Sbjct: 16 KTMPPHSAKQALAPARLLERLRETAEQPLVVVTSLAGFGKTSLLVQWRRELLATGAAVAW 75 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 ++D D F L+A+++ A G Q Q + + +++ +++ E Sbjct: 76 LTVDASD-DSATFIPALVASIRVAV-GLDVPARAFDQLGQSGADLWIASEVLVQIHELAR 133 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P Y++IDD H +++ E + + IR+ P N +V SR P + L + + Sbjct: 134 PTYVLIDDLHQLSDEHAVEFVYYLIRNAPPNFHVVATSRADPPFPVEELNAHGLYTQFVT 193 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 + L + F RL I+ +R+ + GW ALQ++ + + + A A Sbjct: 194 EDLRLRLDDTIGFLRRRLGEDIDIETCARLHERTEGWPMALQIVTAAMARKSDIAGTVAG 253 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 ++ Y VL++++ L++++IL++ + L ++G + L + Sbjct: 254 --LSGATGDIARYFSQFVLESLEPDAVAMLVRASILKTQHPELCAALSGVADSGEILSRL 311 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 E+ + + G+ + HPLF +L A EL +H AAE + A +A Sbjct: 312 EQNTGLVTSVGGDGDNYRMHPLFIEYLHSLLDALPAEELRVLHATAAEWFAAHNMLEQAA 371 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HA AG D + L + + L LP + + + L AW Sbjct: 372 DHAFVAGMRTQAMDWIEKRLRHLGVQGRIVEVLAWLDRLPPEEITRREGIQLTAAWACAL 431 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 +R + L + + N +R+ VAI+ + A + Sbjct: 432 CYRPQDAERLADVILARPGVT--PEIALQANIVRSAVAIHCDDYTRAR-------GCIES 482 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 + + L V G R+ Q ++ R ++ A++ + Sbjct: 483 YDPELGPLYCNTLSFVAIHTGFPDRARYYQQISDGRGRGVRNFYDAMYGAFAVGLSYLIE 542 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 G A A + + A W DEA A + ++++ Sbjct: 543 GQASEAAGVFRAALERAEASTGWRSLPAAVQAAGLAAACWELGAEDEARALLANRLDLIE 602 Query: 602 SYQPQQQLQ-CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 + L + +G A LN L + G + + + ++ Sbjct: 603 QAALPDAVMLAYLTLARYENQKGREGKAFDALNSLAAI-GELRGQPRLVVASLGEQLRQH 661 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHF------LQGQWRNIARAQILLGEFEPAEIVLEEL 714 + + L + + R IA ++ L +F VL Sbjct: 662 AIRNRIVSCRMLLGAIDEIVAGADRPDHGLEAELRLVREIAATRVALLDFNDEGAVLALE 721 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 + RL ++ + L + A R+ +AL LA + + A Sbjct: 722 RAGGIAARLRRGRDQLTVKLLAACCEGSGDDAAARLFAEALSLAESFRLVRVIADDWPAA 781 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 + L +L + + + R + R + Sbjct: 782 LECLPELDRSGLAKGA--GITPAFVERAAERCRFGWVPEATGQKT-------ADPKNRPA 832 Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLL 894 L+ RE ++LG + G SN++IA L+V A TIK H++NL KL A+R+ AV A+ L Sbjct: 833 QLSAREMEILGALSLGRSNKEIAKMLDVGAETIKWHMKNLLAKLNAANRRHAVDRARLLG 892 Query: 895 KMM 897 + Sbjct: 893 IIE 895 >UniRef50_Q13RN6 ATP-dependent transcriptional regulator, MalT related, LuxR family n=3 Tax=Burkholderiales RepID=Q13RN6_BURXL Length = 930 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 183/908 (20%), Positives = 336/908 (37%), Gaps = 44/908 (4%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIG 60 ++L P + RE L+A+L A R +I PAG KT+ + D+ Sbjct: 41 TRLIPPRAARQLIPREALMARLLEARRQRCVVIQGPAGSAKTSTMLALRQAMLTLDFDVA 100 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYA-SLTSLFAQLFIELAEW 119 W SL D+ F L+A++ E + + ++ L + Sbjct: 101 WLSLAPEDDDLTAFFHGLLASLASVDPAIVREAELLVGRESEETAVEHWVITLVRGITRR 160 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 L L++DD H + N I +++R+ + + P L +V+ SR + +A LR + E+ Sbjct: 161 KRELVLMLDDVHYLQNARILDALRWLLDYAPPQLHVVLASRRALPVSLARLRSQGLATEL 220 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L F+ +E+++F +L I ++ + + GWA LQL A+ + +A Sbjct: 221 DREDLRFSAEESERFLREQLG-DITKRDAQVVHELTDGWAAGLQLFAIDLKTRKGAA--- 276 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG----EENGQ 295 +A + Y EVL + L ++A+ L + + Sbjct: 277 FAPATVRDAETFAHYFEREVLVRLAAEDLLLLTRAALCERFCARLCASLMQHASSAGDVA 336 Query: 296 MRLEEIERQGLFLQRMD---DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWM 352 RL +E LF+ + D W+ HPL L++R AAEL E+H AA + Sbjct: 337 ARLSRLEGDNLFITQTGVGQDGETWYRLHPLLREVLQRRVAGLPAAELRELHAAAWQWLS 396 Query: 353 AQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 QG+ EA+HHA+ A +A D++ A L EL L ++ LP + E L Sbjct: 397 VQGYVDEAVHHAVLADNAQAAADLVEGCAHDLLARGELRQLAGLVRRLPPAQIAERFDLR 456 Query: 413 LLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLA 472 ++ A+L + + + + + LR +A+ + D L Sbjct: 457 VITAYLQMYAGETDALMQSIQQIASR-SERPDPRQRYALELLRGGLALQRDDTDSVVALL 515 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + R ++L + +G+ ++ ++++ L Sbjct: 516 PELQRVPADADDFIRAGRGNILSWMFIHRGDYQQARKVLEEGAPHG---GAPRGILLGRC 572 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 A+G + A +Q + + + + L+ +D + Sbjct: 573 MSGMTHAAEGQVLLAERVFCDVLAEAEKQGPAYVGIACMAAALLGEALYELNDVDASLRL 632 Query: 593 ARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 I VL P L+ L +L + G A L RLE+ ++N Sbjct: 633 LAERIGVLERVSIPDTVLRALVVLARAHRFAGRRSEAYDYLERLEDYAKRHGV-DRLLAN 691 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW--------RNIARAQILLGE 703 A +R + G A L ++ R + L + Sbjct: 692 ALCLRSRWLLEEGRLDEAEAALLRCETLAARYTGAVRSTAWEISVCADLARIRMCLHLND 751 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 F+ A L+ L+ + + + L ++ A+ L++AL+L +R G Sbjct: 752 FDGAMSRLKPLSALSEAGGRWCRVIGLRLQMSIAEQGRHNDRAAREHLVEALRLGHRLGL 811 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 + + E Q L L + AQR++ D Sbjct: 812 MRSLLDELGPCRQILDALPLEQDFDPVLAFYAQRLI--------------DAGQASAPAA 857 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 P + L++RE +V+GL+ N++IA ++V+ T+K H++N+Y+KL V+ R Sbjct: 858 PPAAAAHVPIQSLSERENEVMGLLALALPNKKIARVMDVSLDTVKWHLKNIYRKLEVSGR 917 Query: 884 QDAVQHAQ 891 AV + Sbjct: 918 DGAVAKMR 925 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 76/578 (13%), Positives = 142/578 (24%), Gaps = 65/578 (11%) Query: 329 RQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHS 388 R+ A +L + RAA + + HA +AGD L + Sbjct: 294 REVLVRLAAEDLLLLTRAALCERFCARLCASLMQHASSAGDVAARLSRLEGDNLFITQTG 353 Query: 389 ELSLLEESLKALPWDSLLENPQLVLLQA----WLMQSQHRYGEVNTLLARAEHEIKDIRE 444 E + P + ++ L A L + ++ V + A H Sbjct: 354 VGQDGETWYRLHPLLREVLQRRVAGLPAAELRELHAAAWQWLSVQGYVDEAVHHAVLADN 413 Query: 445 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGEL 504 A+ A + G R + LPP R + + GE Sbjct: 414 AQAAADLVEGCAHDLLARGE----LRQLAGLVRRLPPAQIAERFDLRVITAYLQMYAGET 469 Query: 505 TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 564 + +QQ + + + + + + + + ++ Sbjct: 470 DALMQSIQQIASRSER-PDPRQRYALELLRGGLALQRDDTDSVVALLPELQRV---PADA 525 Query: 565 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 624 + I + + +A G P+ L M A G Sbjct: 526 DDFIRAGRGNILSWMFIHRGDYQQARKVLEEGAPHG--GAPRGILLGRCMSGMTHAAEGQ 583 Query: 625 LDNARSQLNRLENLLG-NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT--AKPEF 681 + A + G + A + D A+ L Sbjct: 584 VLLAERVFCDVLAEAEKQGPAYVGIACMAAALLGEALYELNDVDASLRLLAERIGVLERV 643 Query: 682 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 741 + + +ARA G A LE L + A+ + L L L ++ + Sbjct: 644 SIPDTVLRALVVLARAHRFAGRRSEAYDYLERLEDYAKRHGVDRLLANALCLRSRWLLEE 703 Query: 742 GRKSDAQRVLLDALKLANRT-GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILR 800 GR +A+ LL LA R G + E A R + L+ + L Sbjct: 704 GRLDEAEAALLRCETLAARYTGAVRSTAWEISVCADLARIRMCLHLNDFDGAMSRLKPLS 763 Query: 801 EINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGEL 860 +++ + + L Sbjct: 764 ALSEAGGRWCRVIGLRLQMSIAEQGRHNDRAAREHL------------------------ 799 Query: 861 EVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMG 898 +A++ +L M Sbjct: 800 -----------------------VEALRLGHRLGLMRS 814 >UniRef50_Q0B0H9 ATP-dependent transcriptional regulator-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0H9_SYNWW Length = 1111 Score = 339 bits (870), Expect = 3e-91, Method: Composition-based stats. Identities = 173/814 (21%), Positives = 317/814 (38%), Gaps = 27/814 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK--NDI 59 L+ S+L+ P + + R+RL + R+ IT+PAGYGK+ ++ + Sbjct: 27 LVNSQLTPPHIKNS-IKRDRLQELGLSILSHRVTTITAPAGYGKSVWVASLLQEEEWPPT 85 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAI-CETMAQKRQYASLTSLFAQLFIELAE 118 W SL+ + F +LI A ++ + + T+ R + A I+ Sbjct: 86 AWLSLERYNGDPSFFLYHLIHAFKKINPEYGSQSLRTLNSLRNLKQDYFIAASAIIQELP 145 Query: 119 WHSPLYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + LV+DDYHLI N ++ + M + IR P ++V+SR P+L + ++ +LL Sbjct: 146 QDQEMVLVLDDYHLIDQNQLLPKIMEYLIRRLPLRTHIIVISRTPPKLNLHQELLKGELL 205 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI SQ L FT +E ++ + + + I GWA ++L+ LS +Q + Sbjct: 206 EISSQALLFTPEEIRELLS-LEGLVLSTEDCTYIHHCTEGWAAGVRLLGLSLKQFGGNWR 264 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + L G + L YL E+ + + + FLL +AIL + L V G+ + + Sbjct: 265 NNLSSLTGKHT-ALYIYLSHELFNYLTRELQDFLLDTAILPYLEPILCQEVLGDTRSEEK 323 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQR-CQWELAAELPEIHRAAAESWMAQGF 356 + E+ GL +++ + +H L FL +R + + R AA G Sbjct: 324 IHELHLMGLL-SQVESNTTIWRFHHLIREFLLERALNIRSPEYIVSLRRRAAFHLEKNGH 382 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 +A+ A D D++L +A + + L +K LP D L + QL+ + Sbjct: 383 IDQALEQLAACADWSKAADLILAYAEPYFLENGCHNALYSWIKTLPVDYLNSHHQLLYYK 442 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAIN-DGNPDEAERLAKL 474 ++ + + +L+RA +D + + E +L A +A++ GN Sbjct: 443 GICLRD-NHPQKAQEILSRAAARARDKGD--VKGEIRSLMAILAVHIFGNDSTRSEAVAG 499 Query: 475 ALEELPPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + + +++ A + +L + L L + + + + + L+ Sbjct: 500 RIPVIASSLKDSWAQGFALVAALGKAVSEDDLKQGLYLSRLVAKTPLE---PEWQFYYLL 556 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 + + G L TA + EKA L Q ++ + + + A + A Sbjct: 557 LSGVVHYRLGNLDTARQLAEKALALPLVQKSDR--WLGVAYVLLSGIYCAKGEIRPAIEI 614 Query: 593 ARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 +R I++ Y P Q L Q L +G L A + L + L + + Sbjct: 615 SRQLIQLGHKYNIPHQIAYGHRRLAQVYLLQGKLVEA-RYESELCSELWLEANNGAMARH 673 Query: 652 ANKVRVIYWQMTGDKA----AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPA 707 A+ + + +TG+ A + + G+ E A Sbjct: 674 ADLETIFFRIITGENAKNSFQEKQDFIKIILNKQSGYGSKDYSLSIAGVIAREAGQMEQA 733 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 LEE ++ L LL L LY G +S+A L AL LA + + Sbjct: 734 RQWLEESAASSEKKGAKQLLAGTLLNLASLYLLLGDESNADHKLHKALGLAQANKIDTFW 793 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 801 E + + + + + P+ H QR E Sbjct: 794 DWHPETVYKMCHRALLKSIYPQWALHILQRWFSE 827 >UniRef50_A1HM46 Transcriptional activator domain n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM46_9FIRM Length = 1066 Score = 331 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 160/787 (20%), Positives = 291/787 (36%), Gaps = 31/787 (3%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDI 59 +L+ SKL+ P + ++R L AKL+ + + + ++++ AGYGKTT + Q Sbjct: 5 VLLRSKLNMPKLDNDVILRTALKAKLADLDKYPVTVVSAGAGYGKTTALVQALTQMSVPC 64 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASL----TSLFAQLFIE 115 GWY+ D+ F++YL A++ G + + L A L Sbjct: 65 GWYNPGPEDDNVYIFSAYLAGALEPLAPGITNWYLNNIAQEEKFDWKKAFQLLMAGLEDR 124 Query: 116 LAEWHSPLYLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVR 173 + P LV+DD+H + T P I F+ + L +V+LSR L I LR + Sbjct: 125 EEQELRPGILVVDDWHFVQTEPEIRLFFDRFLACRRPTLHVVILSREKINLPEIDRLRAK 184 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 ++LE Q LAF++QE QF + L E +I GW A++LI S Sbjct: 185 GKVLEFSEQDLAFSYQEIHQFINNFLPVTFTQQEVEQIYKHTEGWIIAIRLILNSLANK- 243 Query: 234 HSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 + N L +YL +VL + FLLKS+IL S + + + G+E Sbjct: 244 -PKQNILSQAEYENMEILFEYLAHDVLVRQPEPLQMFLLKSSILESFHAQMCQEILGDEF 302 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 L + ++GLFL +D + YH LF FLR+ + L IH A + ++ Sbjct: 303 SYDLLALVRKRGLFLSEIDKG--IYRYHNLFREFLRREASKRVPD-LQTIHVKAGDYYLR 359 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 G +A++H + IL + +L +L L+ LP + +P +++ Sbjct: 360 HGEEEQALYHLILGKQWDKAVAILRKISRNLVYSGRGRVLCGYLQQLPAMEHI-HPDIIM 418 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 + Y + L +A + + T + + ++ P +A+ + Sbjct: 419 ALGDEARFACNYKKAIGLYEQAAANYSEANDFTGVSNAYRGIGETYLDIIQPLQAQLYLR 478 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 A + L + ++ E + +G R+ + + + Sbjct: 479 RAYKALTAEQGKEKAAILGLMAENMINRGNPRRAERYRRLAREFNFEDKN--------NL 530 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 ++ IL G + A + E+ QL E+ I + + D+A A+A Sbjct: 531 EARILLRTGRIYDAIKVVER--QLSREKSYHIPCSFRESSLILSLCYAYSGQPDKALATA 588 Query: 594 RSGIEVLSSY-QPQQQLQCLAMLIQCSLAR--GDLDNARSQLNRLENLLGNGKYHSDWIS 650 + GI V P L L + D + + ++ Sbjct: 589 KEGIRVGEKLRSPFITAVGYIRLAHALLIQLPRDKEQCWLAYQKGLDIGSKLDILRSRTE 648 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTA--KPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 + + + D +AA + + + F + + + + +F A+ Sbjct: 649 VLQG-QCLLHALENDWSAAKSCGHSGVKITEQVQDRWFTAVLYHTLGMSAAICQQFTEAK 707 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 L+ N L + + + Q L L N G+ HF+ Sbjct: 708 AYLQAANRLFHRCGDNFGKAAGAWWLAYIALHRQQPEEFQVAFHSLLSLCNTFGY--HFL 765 Query: 769 IEGEAMA 775 +E + Sbjct: 766 LERPTLL 772 >UniRef50_Q0S8R3 Transcriptional regulator n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0S8R3_RHOSR Length = 881 Score = 331 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 183/911 (20%), Positives = 329/911 (36%), Gaps = 57/911 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKL-----SGANNFRLALITSPAGYGKTTLISQWAAG-- 55 + +++ TV R RL L A+ +AL+ +PAG GKT + W Sbjct: 11 LSTRI-PTSAGGRTVTRTRLHTMLTEALTDDAHPCPVALVCAPAGSGKTRAVGDWVRELL 69 Query: 56 ----KNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQ 111 I W +++E N + ++ ++ N L AQ Sbjct: 70 AAGDAPTIAWLTIEERHNDLDVVHRAILRSLTDTGNARVQKACAGLDSEAP----DLGAQ 125 Query: 112 LFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR 171 L L E +++VIDD HL+ + + + F+R QP L +V++ R P L + LR Sbjct: 126 LSAALHELGENIWMVIDDAHLLRDTDVLTDLESFVRWQPPMLRMVIIGRFEPPLALQRLR 185 Query: 172 VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ 231 + +L + ++ LAFT EA + D + A + + D GWA ++L +S Sbjct: 186 LDGKLFTLTAKNLAFTSDEAAEMLDEH-DVVLSADDLDALMDRTEGWAAGIRLAGMSLEG 244 Query: 232 NTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGE 291 + + A + ++DYL++EVL R FLL++++ S L ++TG Sbjct: 245 HPDPSRLIAEFT--GDRRAVADYLIEEVLAGQTDEMREFLLRTSVPVSFTVELAEKLTGC 302 Query: 292 ENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW 351 + ++ +E + R+ D+ + YHPL ++LR E+ + AA Sbjct: 303 TDAHGNIDWLEHHNFLISRITDSPTHYRYHPLLRSYLRAEISRIGHVEVEHLELTAAHWH 362 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 G A+ HA+ +GD + +L + +L ++ L P S ++P Sbjct: 363 DEFGDALLALEHAVNSGDHDEIVALLARTSLALIVGGHGEAVDRLLTRAPRSS-QDHPSA 421 Query: 412 VLLQAWLMQSQHRYGEVNTLLARAEHEIKD---IREDTMHAEFNA---LRAQVAINDGNP 465 L++A + + L + LR Q AI G Sbjct: 422 RLIRAAAALASGNIPVATSTLELLDRRRSGLLVDGAAESRVHLLLRESLRVQTAIGTGGI 481 Query: 466 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 525 + A + + G G L G S ++ ++ AR DV Sbjct: 482 ETALNRLRN-VGVGSSGDPDLDAFVLLQEGRALLFLGRNDESEVVLGKSLAHARLGDVPL 540 Query: 526 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 585 ++ L + ++G + A ++A + P + I + + Sbjct: 541 GVMYCLGTLGGVAMSRGDVVRASALADEALAIGRTHSATSDPTFQLAKLIDSWCRYIRMD 600 Query: 586 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 645 D A +A S + ++ A + G+ ++ + L+ + + Sbjct: 601 PDAARLAAESAEALHRAHTETAGFADGAATLFGLDETGNRHSSVTTLHAESPVSSSLPVP 660 Query: 646 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 705 + + G+ W A A A + L + Sbjct: 661 PGIRAVLLPAIQYAYLFAGETG----WAHELASETHALLGPTGDTAVVEAIVHLHLHRLD 716 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A L+ + + ++L L+ + S A L +AL+LA + Sbjct: 717 LARKTLQPVLDGELECAAGTNLIAAWLVDASIALARKHDSRAHSALTEALRLAEPQSALR 776 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 F G + + L + + E F ERL Sbjct: 777 PFHDCGPQIRELLVRSTGRFGV--------------------------LEPFAERLRASF 810 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 E + LT RE ++L + S + EQIA +L V+ T+KTH+R +Y+KLGV R+D Sbjct: 811 PRSESAASDMLTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYRKLGVTSRRD 870 Query: 886 AVQHAQQLLKM 896 A+ AQ + Sbjct: 871 AIAAAQHNGLL 881 >UniRef50_Q46TL6 Regulatory protein, LuxR:Tetratricopeptide TPR_4 n=7 Tax=cellular organisms RepID=Q46TL6_RALEJ Length = 960 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 177/914 (19%), Positives = 332/914 (36%), Gaps = 42/914 (4%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKNDIGWYSLDE 66 V RERLLA+L+ A R +I PAG GK+ + W D+ W +++ Sbjct: 56 RGAARVVARERLLAQLTEARRRRCIVIQGPAGCGKSAALMAWRLELLGLGFDMAWLTVEP 115 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKR-QYASLTSLFAQLFIELAEWHSPLYL 125 DN R+ L+ + + +A + + L +A L L Sbjct: 116 EDNDLARWLDRLLGCLSDVSPAITREAMLLAGRGLDDEGVERTIIALVRGIAACPRELTL 175 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 V+DD H IT + ++M++ + + P NL LV++SR L + LR + LLE+ + L Sbjct: 176 VLDDLHHITELRVRDAMQWLVDYAPPNLHLVLVSRAALPLSLGRLRDQGLLLELDQRDLR 235 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA-----HKSA 240 FT +E++QF +L I ++ + + GW LQL A ++ Sbjct: 236 FTAEESRQFLAAQLG-DIAPRDARMLHELTDGWVAGLQLFATHWKRKRQHDSGISFATDL 294 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM---- 296 R NA + Y EVL + L+++A + +L ++ + Sbjct: 295 VRANVQNAGAFAGYFEREVLSRLAPDEAELLVRAAACERFSASLCAALSEGSQTEAEVLT 354 Query: 297 RLEEIERQGLFLQRMDDTGE--WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 L +E + LF+ ++D+G W+ HPL L +R + + +H AA + + Sbjct: 355 LLARLESENLFIAPVEDSGRETWYRLHPLLRQTLAERFRARSERQQGGVHTAAWQWFRDH 414 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 EA+ HA+ AG+A D + A +L E+ L+ LP + + + +L +L Sbjct: 415 RMLEEAVRHAILAGEAGTAADFVERFATTLMARGEIRKALVLLRLLPAEQIQQRIELRML 474 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + H + R E ++ + + R + + + A+ L Sbjct: 475 TLRMHILMHDADAAAAIADRIEVDLPADAD-KLRYRLALQRLSIMVLRDDTAGAQALLPQ 533 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM----ARQHDVWHYALWS 530 L+ + ++L + GE + + + + A +L Sbjct: 534 VLQPPEQLEPFYAGGRNNLLSWLYMHLGEFELARRVQTDAQPLMVEGAPLVGTASGSLNG 593 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 +G + A + + + F + + L+ L+ A Sbjct: 594 RCMIGFSYALEGKMLQAERVCRDVLREVEHAGSARSEPEYFAAVLLGETLYEQGDLEAAR 653 Query: 591 ASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 ++VL P L+ +L G +A +QL R+E GN + Sbjct: 654 RLLEDRVDVLERVSIPDTVLRVHTVLAAAHWLSGHRLDAFAQLERMEEY-GNQFRLDRLV 712 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW--------RNIARAQILL 701 + + +V+ ++GD A L + H +G R + Sbjct: 713 AQSLGYQVLLHVVSGDIDTAEAVLSRLRAVALRHEHAPRGVLDAIHLSAERASILVSLAH 772 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 E + A + L + + +L + + G AQ + AL+L ++ Sbjct: 773 NELDDAWRRVMGLLAYCEARGWQRHATQQHILAAVIASRRGDTETAQDHAMIALRLGHKL 832 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 G + + L + +R+ + A + Sbjct: 833 GLVRALMDTYPGSLDLLVAAAANEPQDPVLGFYVERL----------QAAAQVLPQMASG 882 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 L L+ RE V+ L+ N++IA L ++ T+K H+RN+++KL V+ Sbjct: 883 NTESTDHALAGQEELSDREADVVRLLAQALPNKKIARTLGLSPETVKWHLRNIFRKLNVS 942 Query: 882 HRQDAVQHAQQLLK 895 R +AV + Sbjct: 943 SRDEAVARMRDRGL 956 >UniRef50_C3JMT5 Putative transcriptional regulator n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JMT5_RHOER Length = 876 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 168/909 (18%), Positives = 307/909 (33%), Gaps = 53/909 (5%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGA------NNFRLALITSPAGYGKTTLISQWAAG- 55 + + P + V R RL KL+ + + L+++PAG GKT L++ WA Sbjct: 6 LNGRFHPPTAVKGLVARPRLHHKLTASTATKGSGPGPVGLLSAPAGAGKTLLLADWAREY 65 Query: 56 -----KNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFA 110 + W +L E DN L A+ + + Q + Sbjct: 66 SRASPDVALAWLTLAERDNNVSILCESLAEAIATSVDAAGQRLPV--QTGSRPPVEQWLT 123 Query: 111 QLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANL 170 L L++DD H + +P+ + + P NL+++V +R P L L Sbjct: 124 HFAETLETHERRTTLILDDVHTLHDPMSIGLLDRILTQTPGNLSIIVAARYEPPLTWHRL 183 Query: 171 RVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSAR 230 + +L S LAF E F + E + + + GW ++L A Sbjct: 184 ALDGRLTRFASTDLAFDRSEITAIFGE-YDITLRDDELAIVENFTKGWGAVVRLTAAFLA 242 Query: 231 QNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG 290 + A ++D+LVDEVL ++ F+L+++++ S + L +T Sbjct: 243 GRSDIGD--ALDEFTHTPRPIADFLVDEVLTSLPEHVTSFMLRTSVVDSFSAQLAETLTD 300 Query: 291 EENGQMRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAA 348 N + ++ + + + R D D WF YHPL LR + E +H AA Sbjct: 301 -SNARSEIDSLIQFNFPVTRTDSADHTTWFSYHPLLREHLRAEFRRVDHVERNRVHLRAA 359 Query: 349 ESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLEN 408 + + F EA+ ++ GD + L L + L+++ + E+ Sbjct: 360 SWFESNHFELEALELEVSIGDPHRILAFLERCGLGLVLDGHCGDVVRVLESVS-TQVSES 418 Query: 409 PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA 468 P L+ A T L E I ED + + + V N A Sbjct: 419 PITRLVLAAAALHSGDVTSATTCLDLLEATHPPIAEDPLFLAMSLEISCVTATSDNEPLA 478 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 RL + A L + E R+ Q + + L Sbjct: 479 ARLER----RQKSTHSDIEAYAHMELATAHLLRREFDRATVEYTQAVALGTIRGRARFVL 534 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 SL + G + A E + +E + A + A + Sbjct: 535 KSLTGLGYVASLSGDIGAMRAHSVYALDYAVEHRITTTAEYELSASVAAFATYLCASSEL 594 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 G + + LD + + + ++ + Sbjct: 595 PYRIPTIGNYRSTDI-LGASAPVFGWHSVVTFGLHSLDGSTDRRSTAADVRDAMLSAIEL 653 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 + A + + + A + F + ++AR + + AE Sbjct: 654 RTFAFATLALLPPVVHACLSVGEVEWAARLVRDAADQFGETSEIHLARGAVAFSSNKFAE 713 Query: 709 IVLEELNENA-RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 ++E + L++ L ++ G + + R L AL+ A + F Sbjct: 714 ALVEVSEALGSSEIPLLAHHVYAWTLEAGIHAATGHERKSFRSLHKALRAAEAGSLLRPF 773 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 + G ++ + E F E++ + Sbjct: 774 LDYGASLRPVFDEFSGHFGDQEA--------------------------FAEQVRSRIRP 807 Query: 828 PELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 EL+ LT E+ VL + SG + E IA L ++ TIKTH+R +Y+KL V++R+DA+ Sbjct: 808 QELVSAPILTPGEYTVLRELASGDTTESIADTLFLSVNTIKTHLRGIYRKLEVSNRRDAL 867 Query: 888 QHAQQLLKM 896 + A++ + Sbjct: 868 KAARRGGLI 876 >UniRef50_A9BM99 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=cellular organisms RepID=A9BM99_DELAS Length = 924 Score = 329 bits (843), Expect = 4e-88, Method: Composition-based stats. Identities = 218/923 (23%), Positives = 364/923 (39%), Gaps = 52/923 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQ----WAAGKN 57 + +KLS P V R + A+ A R+ L+ +PAG+GKTT + Q A Sbjct: 19 VPQAKLSPPRAAAAQVARLAVAARWPEALRARVVLVRAPAGFGKTTAMRQMRERLQAEGQ 78 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 W +LD DN RF L AAV+ G ++Q LA Sbjct: 79 ATAWLTLDAADNDVSRFLQCLGAAVRTLGVGPSQGAGELSQA-------------LHALA 125 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 L IDD+ ++ N + +R + PE LV+ SR LP LG+ LR QLL Sbjct: 126 GEGRSFALFIDDFEVLHNDAVLGLVRQLMEQLPERGRLVIGSRALPALGLGRLRTSGQLL 185 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 EI + L F+ EA++FF R P+ +R+ D GW AL L +L+ ++ + Sbjct: 186 EIDAALLRFSVGEAEEFFRLR-GCPLPREALARLLDKTEGWIGALWLASLALERHGPHSD 244 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 R + ++DYL ++VL + R FLL+++ILR+++ + + +G Sbjct: 245 FIERF--SGSERAVADYLAEDVLAQQPASVRDFLLRTSILRTLDAQVCQALVPRADGAAM 302 Query: 298 LEEIERQGLFLQRMDD------TGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW 351 L+ +E+ LFL + D G + YH +F +FLR + E EL +H AA+ + Sbjct: 303 LQALEQAHLFLVPLADEAQGGQGGHSWRYHSMFADFLRAQLLREQPGELTRLHLAASGWY 362 Query: 352 MAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQL 411 + G P AI HAL GD +L HA +L + LL A+P + P L Sbjct: 363 ESCGRPVPAIEHALEGGDLPHALSLLARHAEALMEQGRMRLLSRWFSAMPAPLMAREPLL 422 Query: 412 VLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERL 471 + A+ + L + + A AL+ + +EA L Sbjct: 423 QAVAAYADCFTRGPWQAQQRLDALRPRMAA--DPAAQALVMALQPLLLAMMDRVEEAAPL 480 Query: 472 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 + AL LP ++ T+ + V+ G+ + L+ + Q +++ Sbjct: 481 GRQALACLPSCRPFADSSLTNAMAYVVSVLGDAEEAHRLLDAAR--STQAGSLFSRMYTE 538 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLE-QLPMHEFLVRIRAQLLWAWARLDEAE 590 + + + G L+ A A + + + A +L+ LD A+ Sbjct: 539 AMEGVLDLSGGRLRQAASRFRVALAATPRSASYNPTNGNAWAGVLHAGVLYETNDLDGAD 598 Query: 591 ASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 + + P + M + + RGD+D A L LE LG+ + Sbjct: 599 HLLNVYLPLARDVGLPDHVISSYRMRARIAFVRGDVDAAFGLLTELE-YLGHERQLPRVT 657 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA--------NNHFLQGQWRNIARAQILL 701 ++A + + G++AAA+ L P H ++ R + Sbjct: 658 ASARLEHARIFVLQGNRAAASEALERADDPGVWPRVERLRLPPHEVEDIAIARLRWGLHF 717 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 G+ + L +A+ + +L G A +L L+ Sbjct: 718 GDCRAVRDAIAPLLADAQLRGRRHRSLKLQVLCALAEAGCGDMDAAAAMLAQPLRHGASE 777 Query: 762 GFISHFVIEGEAMAQQLRQLIQL-----------NTLPELEQHRAQRILREINQHHRHKF 810 GF+ + EG +A L++++ E A R ++ Sbjct: 778 GFVRLMLDEGPLLAPVLQRVLSPSLSLSQTPSLTRRTEAAEPEAAAHAQRLLSALGEPAE 837 Query: 811 AHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTH 870 VP PLT++E +VL L+ SGYSN +A +L V+ +T++TH Sbjct: 838 PADPPELQAADAPQGPVPATALAEPLTRKELRVLELLASGYSNAAMAEKLFVSDSTVRTH 897 Query: 871 IRNLYQKLGVAHRQDAVQHAQQL 893 +R++ KLG R AV A++L Sbjct: 898 LRSINLKLGARSRTQAVALAREL 920 >UniRef50_C7RL93 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RL93_9PROT Length = 904 Score = 328 bits (840), Expect = 8e-88, Method: Composition-based stats. Identities = 221/916 (24%), Positives = 365/916 (39%), Gaps = 45/916 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK-NDIG 60 ++ SKL RP + V R LL L + L L+++PAGYGKT+L+ W G+ Sbjct: 12 IVRSKLRRPRVVADFVARSELLRLLDAGSELPLTLLSAPAGYGKTSLLVHWLEGRDAAAA 71 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLD D++ FASY +AA++ CA SL +L L L Sbjct: 72 WLSLDRDDSEPMIFASYFVAALRSVFPAACAETLACLNASPPPSLATLAGSLSNALEALP 131 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 +PL LV+D Y + +P + + H L LV+ +R P+L + LRVR+ ++EI Sbjct: 132 APLVLVLDGYQHVDSPSTQALLDRLLAHPASGLRLVISTRQDPRLSLGALRVREAMVEIR 191 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 L F + + + + + + GW ++L AL+ R +A A Sbjct: 192 VPDLQFDERASATLIERCAGRAVSGEDLLHLQACTEGWPVGVRLAALALRNGDDAAAGLA 251 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG------ 294 R L+G + L Y V+E+L + T LL+++IL L V E Sbjct: 252 RSLSGESP-QLQQYFVEELLADQTAGTVDCLLRTSILDRFCAPLCDAVLWEGAALGETLV 310 Query: 295 -QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESWM 352 Q L + + +DD W+ Y LF FL+++ A++ E+H AA Sbjct: 311 SQALLRVVSSGAMLCTVIDDGRHWYRYRRLFREFLQRQLSLRCTPADIAELHHRAAAWLA 370 Query: 353 AQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 QG EAI HALA +L H L + L+ L+ LP D++ +P+L+ Sbjct: 371 TQGLLEEAIPHALAGDGGAAAGQLLARHRNLLLGREQRWRLDRCLRLLPPDTVEGDPELL 430 Query: 413 LLQAWLMQSQHRYGEVNTLLARAEHEIKD-------IREDTMHAEFNALRAQVAINDGNP 465 +++AWLM Q R+ E++ ++ R E I + + ALR+ A +G Sbjct: 431 VMKAWLMYHQGRHVEISAVVDRIEALIDSTVAGIQLPGSEALRGHLLALRSLHAYLEGQA 490 Query: 466 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH 525 A LA+ AL+ LP ++ + A ++L G+L + ++Q A + Sbjct: 491 GSAVALAEQALQRLPVACVHAHVTAQALLAGGRQAAGDLAGARDGIRQALAHA-AGPIDA 549 Query: 526 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 585 + I + L +A + + + + + + Sbjct: 550 CQAPLVATLCLIDWMAADL-SALQWTADQYYNLGDARFASEANAALGRYFLGLVQYQRNE 608 Query: 586 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 645 L AEA+ + + + + + +L A G D AR+ ++ + L Sbjct: 609 LSLAEATLLPALAPEQAPRLGYRTEMSFLLAAVYQALGQADRARAIVDAVCERLAEKADL 668 Query: 646 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH-FLQGQWRNIARAQILLGEF 704 A + G A A +W R + F +AR I G Sbjct: 669 PALF-RARACQADLALRQGRLAEAQDWARSFDPGPVQFVYRFFSAPHLTLARVWIAEGSD 727 Query: 705 E---PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 E A +L+ L S + L L L L + G +S A L AL L Sbjct: 728 ESRKQAARLLQLLEAQLTSRHNVRFLAEALALQALLEYALGDESAAVERLGRALALTRTG 787 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 GFI FV G+ + + L+ L + + + D Sbjct: 788 GFIRLFVDLGQELVKPLKLLEASIGNARYAGQILAALNDDWLVTAGRQQVGAD------- 840 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 LT+RE ++L L+ SN +I+ EL ++ T+K H +N+Y+KL + Sbjct: 841 --------------LTRRELKILKLLAVRLSNIEISEELCISRATVKRHTQNIYRKLRAS 886 Query: 882 HRQDAVQHAQQLLKMM 897 R++AV A+ L ++ Sbjct: 887 SRREAVVRARTLNILV 902 >UniRef50_Q3BPP6 Transcriptional regulator, LuxR family n=6 Tax=Xanthomonas RepID=Q3BPP6_XANC5 Length = 923 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 207/918 (22%), Positives = 338/918 (36%), Gaps = 47/918 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-----GK 56 L+ KL + VVR LLA L A L L+ +P G+GKTTL++QW A + Sbjct: 24 LLAGKLEPALPPPGAVVRGALLAALDQAQARPLTLLLAPPGFGKTTLLAQWHAHLSTREQ 83 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + + W SLDE D RF +L A+Q A H + A L L Sbjct: 84 SAVAWLSLDEEDADAGRFLGHLAYALQNAGADHA--LCAAVLHNRDHDPRDAAALLIRAL 141 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + +++DDY + + + E + I+H L L + +R +P L +A L + QL Sbjct: 142 RAAPRRISVILDDYDRLGSSPVDELVLRLIKHSGGRLHLALATRRVPNLPLARLDLHAQL 201 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 IGS QLA EA+ + A + + GW ALQL L +T Sbjct: 202 SRIGSTQLALDDTEAQALL----GPHVTAPVADELRRYTEGWPVALQLARLWLEGDTQRR 257 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + R +G +A ++ YL ++V++++D TR LL+++ L N AL V ++ Sbjct: 258 QEVTVRFSGRSA-QIAAYLAEQVVNDLDPDTRELLLRTSPLERFNAALADAVRQRQDSGR 316 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L +E L +D EWF YHPLF +FL+Q E ++H+ AA + Sbjct: 317 LLARLEHFHGLLVPLDGEREWFRYHPLFADFLQQLLDREHPGLSVQLHQRAARWFGDHQQ 376 Query: 357 PSEAIHHALAAGDALMLRDILLNHA-WSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 +EA+ HA G + + W L + L+ ++ + P L L Q Sbjct: 377 LAEAVRHAWRGGCGDLAASYIARAGTWQLLLTHGTHEVRALLRHFDHRTIRDTPALNLTQ 436 Query: 416 AWLMQSQHRYGEVNTLLARAE---HEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLA 472 A L + LL R +++ + LR ++ GNP ++A Sbjct: 437 AHLHIKLGEFAHARLLLERFRDFPAALREPLQRDYTVVVALLRDRLDEICGNPHGLTQIA 496 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 A L R + + +G + + ++ A +++ Sbjct: 497 AQAGA-LDEDDHLGRGMLLCICATTAIAQGAFAVAERYARNARDTMQRGGSEVGASRAML 555 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 + LF +G L A ++A + + AQL + D+A Sbjct: 556 SLGQSLFYRGRLSDAEACYQQALSWCARTPQPDRVLEAAAQCLLAQLHYERGHHDDAADL 615 Query: 593 ARSGIEVLSS--YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 +E+L + R + L + +G+ + Sbjct: 616 LHPALELLEQHDGGVDVLAAGYGTALGLERVRDHSGRSALLLLEHIEQIAHGRKLARLSE 675 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFA--------NNHFLQGQWRNIARAQILLG 702 A R++ AA + T H +AR L G Sbjct: 676 LAAAWRLMLLLEHPGNAAIDVLIARTGGESGLAHTLRSPHRWHDRAAMGFALARWHRLAG 735 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 A +L ++ + + + L R + + + Q G A L AL T Sbjct: 736 RSSAALSILGQIEQACLANDNVCHLARARVRIALVLQQRGELVAALPYLYSALDHVALTQ 795 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 V G LR L Q + RA ++ LL Sbjct: 796 SWQAIVELGLPAKAMLRSLRQHDPQTVGGTTRA--------------------LTIQALL 835 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 + ++RE +VL + GYSN+QIA L ++ T+K H++NLY+KL Sbjct: 836 ERLSGDDDPADDIFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARS 895 Query: 883 RQDAVQHAQQLLKMMGYG 900 R+ A+ A Q + G G Sbjct: 896 RESALAQALQRGLLRGSG 913 >UniRef50_Q0K482 Transcriptional regulator, LuxR-family n=2 Tax=Ralstonia eutropha H16 RepID=Q0K482_RALEH Length = 1290 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 176/898 (19%), Positives = 337/898 (37%), Gaps = 44/898 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KN 57 + +K+ P + RE L+ +L A R +I AG GKT+ + W Sbjct: 391 ITSTKVLPPRGARQLMPREALMGRLLDARRHRCVMIHGQAGSGKTSTLMAWRKAMISLGY 450 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAIC-ETMAQKRQYASLTSLFAQLFIEL 116 D+ W SL DN+ RF YL+A++ +A + +A A + L L Sbjct: 451 DVCWLSLAAEDNEPARFLDYLLASIAEADPAAAREASQVVAAGHDEAEIELWAITLVQGL 510 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 A L L+IDD H +++P I ++++ + + P L + + SR L + LR+++QL Sbjct: 511 ARRQRELVLMIDDLHHVSDPAILLALQWLLEYAPPQLHVALASRTALDLSMERLRLQNQL 570 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 E + L F+ +E+ ++ +L I ++++ + + GW LQL A+ R + Sbjct: 571 AEFDMRDLRFSPEESARYLRDQLG-NIPGSDAAALHELTDGWVAGLQLFAIGLRTRQAGS 629 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + + +A + + EVL + L + AI + L + G+ + Sbjct: 630 YPVTQV---RDARAFASFFEREVLVRLAPDDLDMLTRVAICQRFCVPLCAEILGQPDAVA 686 Query: 297 ----RLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES 350 R+ + LF+ + D W+ HPL L AE+ +H A Sbjct: 687 GIKARVTRMVADHLFITVVGSHDNETWYRIHPLLRETLLGYLAARDEAEIRALHATAWRW 746 Query: 351 WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ 410 + A+G EA+ HA++AG+ ++ A +L ELS + L+ LP + + + + Sbjct: 747 FDARGHLDEAVLHAVSAGEPDAAAKLVEGRAQALLVGGELSQVAGLLRMLPQEQVRRSFR 806 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER 470 L + A+++ + + L + + + + LRA +A+ + D A Sbjct: 807 LHVAHAYMLLYARDFDSLRRSLDEMDAQRASVGT-VGCYTVSLLRAGMALQLDDIDTAAA 865 Query: 471 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 L P ++ + + L +L +GE + ++++ + +R + Sbjct: 866 LLPEIWNPPPEAGDFTWLARANALSWLLIQRGEHDLARGILEEADLRSR---SPRSRQFG 922 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 + L +G ++ A + + + M + A L+ + A Sbjct: 923 RCVHALSLVREGKIRQACKIVREVLAEAEGYGAGYVAMASMAAGLLADALYELNETEAAC 982 Query: 591 ASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 I ++ P+ L+ +L G A + L+RLE + Sbjct: 983 QLLEPRIGMVERTSLPEVVLRASLVLSNSHWIAGRRQQALACLDRLEAYAVRYG-LDRLL 1041 Query: 650 SNANKVRVIYWQMTGDKAAA----------ANWLRHTAKPEFANNHFLQGQWRNIARAQI 699 + A R+ G A A + A + Sbjct: 1042 AEALVQRLRRHLQQGAMERANIVLECVRGLAQRHAASGSDSGPERARALAHAAERAAIDM 1101 Query: 700 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 759 L + A LE + + + L G + A++ + A +L + Sbjct: 1102 ALHTRDFA-GALERIQPLLDATAQGPATASLRMQLAVARQGLGEGAAARQDFVTACRLGH 1160 Query: 760 RTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE 819 G + E M+ LI+ + QR+L + A Sbjct: 1161 GLGLSRTLLDALEVMSDASDALIREPLPDPVLGFYVQRLLAAHRTAASERGAA------- 1213 Query: 820 RLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQK 877 P+ + L++RE ++L L+ SN++IA L V+A T+K H++N+Y K Sbjct: 1214 -----DAGPQSGPIALLSEREREILYLLAQAMSNKKIARVLNVSAETVKWHLKNIYAK 1266 >UniRef50_C1B9T9 Putative LuxR family transcriptional regulator n=1 Tax=Rhodococcus opacus B4 RepID=C1B9T9_RHOOB Length = 897 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 189/904 (20%), Positives = 325/904 (35%), Gaps = 55/904 (6%) Query: 9 RPVRLDHTVVRERLLAKLSGANN-----FRLALITSPAGYGKTTLISQWA------AGKN 57 P + TV R RL L+ A + +AL+ +PAG GKT L + WA A Sbjct: 33 PPGAVGRTVTRTRLHTLLTEALTSEDHPYPVALVCAPAGSGKTQLAADWARDVLAGADAP 92 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 I W +++E N ++ A+ +A N L A+L +L Sbjct: 93 TIAWITIEERHNDLGVIHRAILRALNEAGNPRLRELCDRLDADSP----DLGARLSAQLN 148 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 E ++LVIDD HL+ + I + F+R QP L ++ R P L + LR+ +L Sbjct: 149 ELGENIWLVIDDAHLLRDTDILNDLESFMRWQPPMLRTIICGRFEPPLALQRLRLDGKLF 208 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + ++ LAFT EA ++ + + D GWA ++L +S +T + Sbjct: 209 TVTARDLAFTADEAAAMLTEH-GVRLDPGDLDALMDRTEGWAAGIRLAGMSLEGHTDPSR 267 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 A ++DYL++EVL R FLL++++ S +TG + + Sbjct: 268 LIAEF--SGTRRAVADYLIEEVLAGQTDEMREFLLRTSVPESFTTEFAEVLTGCTDAHDK 325 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 ++ +E + R+D++ + YHPL ++LR E+ + AA G Sbjct: 326 VDWLEHHNFLISRIDESPTHYRYHPLLRSYLRAEISRIGHVEVEHLELTAAHWHAEFGDS 385 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 A+ HA+ +GD ++ +L + SL L+ L P + E+P L++A Sbjct: 386 LVALEHAVNSGDHDVIVALLSQSSLSLIVGGHGEALDRLLTRAPR-TAQEHPSARLIRAA 444 Query: 418 LMQSQHRYGEVNTLLARAEHE-----IKDIREDTMHAEFNALRAQVAINDGNPDEAERLA 472 + + L + I +LR Q AI G+ A Sbjct: 445 AALAAGNLPVARSTLDILDRTKAGTVIGGTDSRRHLLLRESLRVQTAIQTGDIGAALTRL 504 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + E G G L G S ++ + AR D ++ L Sbjct: 505 RSVGPE-STGESDLDAFVLLQEGRALLFLGRSEESEHVLGEALAHARLADASLTVMYCLG 563 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 + + ++G + A ++ + EQ P + + + + D A + Sbjct: 564 TLAALAMSRGEVVRAAAFVSESLMIGAEQSATSDPTFHLVRLVDSWCRYIRLDEDAASIA 623 Query: 593 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 A S + A ++ +A + L+ + + Sbjct: 624 AESADVLHRVNAETAAFADGAAVLFGLDGSDRRHSAVTTLHTHSPVSSTMPVPPGIRAVL 683 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 712 + G+ W A A + + A L+ Sbjct: 684 LPAIQYAYLTAGE----VGWAHELAADAKTLLGPTGDTAVLDAIVHLHAHRLDQARKTLQ 739 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 + E A ++L L+ + S A L +AL+LA + F G Sbjct: 740 PVLEGALVCAAGTNLIAAWLVDTAIALARKHDSRAHSALTEALRLAEPDSLLRPFHDCGP 799 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 + L + + E F E L E Sbjct: 800 QVRDLLVRSTGRFGV--------------------------LEPFAETLRASFPRSESAA 833 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 + LT RE ++L + S + EQIA +L V+ T+KTH+R +Y+KLGV R+DA+ AQ Sbjct: 834 SDMLTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYRKLGVTSRRDAIAAAQH 893 Query: 893 LLKM 896 + Sbjct: 894 NGLL 897 >UniRef50_Q0BZ97 Transcriptional regulator, LuxR family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZ97_HYPNA Length = 897 Score = 326 bits (835), Expect = 3e-87, Method: Composition-based stats. Identities = 163/912 (17%), Positives = 319/912 (34%), Gaps = 50/912 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 L+ SK++ P +L + R L+ +L L ++ +P GYGK+ L+S+W A Sbjct: 18 LLRSKVTPPRQLLSLIRRPDLIQRLETGAEGSLIMLEAPGGYGKSCLLSEWKDQSARQGA 77 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + W ++DE D+ E F +YL + A + + + Q + Sbjct: 78 KVCWLAIDE-DDDVETFIAYLAYSAHIAGIDTAGSGLLNFELSSDGNPSQAIWQFLARIE 136 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 P+++V+DD+ ++ V + +R PEN TLV+ SR + + R + Sbjct: 137 RSGHPVHIVLDDFERLSPAVSRLVIPTLLRRLPENATLVIASRGAVDISTVDFDHRGLVT 196 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 +G L+F QE + + R + + R+ + GW ++L+ ++ T Sbjct: 197 RLGPADLSFGLQEMTRLWKGR----LTPRQIERLSEWTEGWPVLIRLLLTASDMGTFDIR 252 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 G + Y +++L +D FL ++++ + I V +++ Sbjct: 253 HIDE--PGYRDMAIPAYFEEKILSRIDWDLMVFLREASVFEEIPFDAIQEVLDQDD-PDF 309 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 +E FL + + HP+ +LRQ + + AA + +G Sbjct: 310 WRRLESLEAFLVPLSGERSGYRLHPMMREYLRQTLSEQQPGRYGALQVRAANWYSDRGNH 369 Query: 358 SEAIHHALAAGDALMLRDILLNHAW-SLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 A+ HALAAGD +L +IL L+ L + L + + ++P L++ Sbjct: 370 VRAVKHALAAGDETLLIEILEQTGGIRLWLQEGLIEFRAIDRHLKPEIVQKSPTSALMRC 429 Query: 417 WLMQSQHRYGEVNTLLA--RAEHEIKDIREDTMHAEFNALRAQVAINDGN--PDEAERLA 472 ++ + + L A H + +D + +R +A+ GN D+ + Sbjct: 430 VILMKSGKQSDAAALYDGIIARHRARIAADDLLSISSTVMRVMLAVYGGNKINDQDVQQI 489 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + A+ + + + H G+L ++ + + + ++ I Sbjct: 490 EDAIRRPERVFEHFEGFILTFKCLAAHQAGKLRDAIQFAHEALDVFHVSGSLYGEVYIHI 549 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA- 591 + I + +A LI + + I + A D+ + Sbjct: 550 HLAMIHSFMRQTDESVGEFRQASDLIRRDLSFEGGIKYLNDVIAIEARHEHAPYDQKDMP 609 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQCS--LARGDLDNARSQLNRLENLLGNGKYHSDW- 648 ++ + L + + A G LD+A L+ + + S Sbjct: 610 RLKNLVARLLRAEGWIDIYSGAFRTLSEQIYLAGSLDDALHVLSLALDFSRRNRITSLTR 669 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPA- 707 I A + + ++ P A + L Sbjct: 670 ICEAQREILSLISSAPRQSGGGAVAHDAYDPIPALATSPWRVVEAECERHLHLARSGEVT 729 Query: 708 --EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 + ++ + + R LL L + +L +AL F Sbjct: 730 PNLERVTAFRDDQLAEGNLRVATRISALLA-LVSSGRDLERSLGILEEALD---DNRFGR 785 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 + + + Q+ P+L F Sbjct: 786 ATLFVEDILRAQIAGAGLAARFPQL----------------------FARLSARPRPAAG 823 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 E P R S +TQ+EW VL ++ G +++QIA + V I+ H++N+Y KL RQ+ Sbjct: 824 EAPGGRRESIVTQKEWAVLRELHKGQTDKQIALTIGVTEHAIRYHLKNIYAKLNARTRQE 883 Query: 886 AVQHAQQLLKMM 897 AVQ A L + Sbjct: 884 AVQRAAALGLLT 895 >UniRef50_A0R0L7 Transcriptional regulator n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R0L7_MYCS2 Length = 759 Score = 325 bits (834), Expect = 5e-87, Method: Composition-based stats. Identities = 172/665 (25%), Positives = 285/665 (42%), Gaps = 13/665 (1%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN--- 57 +L+ +KL P V R LL LS + RL L+++P G+GKTTL+SQWA G Sbjct: 18 VLLATKLHIPAIAGQLVHRTALLDALSQSCRSRLILLSAPVGWGKTTLLSQWALGAGKDQ 77 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 GW SLD DN F Y+IAA+Q+ + G + + + L +L Sbjct: 78 RFGWLSLDASDNDPVWFWMYVIAALQKISPGVGTRAVELLTMGAD-PIQVVLPTLLNDLD 136 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 P+ L++DDYH++ N IHE + F + P NL +V+ +R+ P L +A LR +L+ Sbjct: 137 AVARPIVLILDDYHMVVNRAIHEQVAFAVGRMPANLHVVLATRSDPLLPLARLRANGELV 196 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+ S L F EA Q + L + + + GWA L L ALS +A Sbjct: 197 EMRSDDLRFGVGEAGQLLNDVLGLDLTEEDVRLLHRRTEGWAAGLYLAALSLAGRAQAAA 256 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 R + H+ DYL+ EVLD R+FLL+++++R N AL V + Sbjct: 257 FI--RTFAGDNRHIVDYLMAEVLDRQSPRIRNFLLRTSVMRRFNGALCDAVLQSSDSVSV 314 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 LEE+ER+ LFL +D + W+ YH LFG LR +P +HR AA+ + A+G Sbjct: 315 LEEMERENLFLVPLDMSRHWYRYHHLFGELLRAELHRCEPELVPGLHRRAAKWFEAEGLV 374 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 EA+ H +AAGD D+++ + LS + L LP ++ +P+L ++AW Sbjct: 375 DEALRHLVAAGDIAESADLIVEDWANELAGGGLSTVSGWLDLLPEGTVRGDPRLSAIRAW 434 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFN------ALRAQVAINDGNPDEAERL 471 + + + + + ++ + A ALR A G+ A Sbjct: 435 VALNVGLFDDARIWIEAVAAGLEGVSAAEGSARAGLSEQLVALREVYAFKIGDVTNALDA 494 Query: 472 AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 531 A+ A +R A G L+ G++ + +Q+ ++ + + +++L Sbjct: 495 ARQAATLEVGEAPPARSAAHVTYGAALYFSGDIDEARTELQRAVELTERTGDRRHRVYAL 554 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + I G L A +A + + Q + + + +L+A A Sbjct: 555 GYLALIEAESGQLADAEHLIRRATGVGPDPAGTQNFIDVAVSLAVSVVLYASGEWAAAAD 614 Query: 592 SARSGIEVLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 +A + + + + L + + GDL+ A + LL + Sbjct: 615 AAHLAVGLARKGAGILEVAKALMVRAKILNDFGDLEAAEKSRSEAGALLRRCPDNVAVHP 674 Query: 651 NANKV 655 Sbjct: 675 MIGSA 679 Score = 98.4 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 67/432 (15%), Positives = 129/432 (29%), Gaps = 46/432 (10%) Query: 511 MQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 570 + + R H ++ L + + + E G + A + E + Sbjct: 328 LDMSRHWYRYHHLFGELLRAELHRCEPELVPGLHRRAAKWFEAEGLVDEALRHLVAAGDI 387 Query: 571 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS 630 WA ++ +++L + + A+ +L G D+AR Sbjct: 388 AESADLIVEDWANELAGGGLSTVSGWLDLLPEGTVRGDPRLSAIRAWVALNVGLFDDARI 447 Query: 631 QLNRLENL-----LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA-NN 684 + + G + +R +Y GD A + R A E Sbjct: 448 WIEAVAAGLEGVSAAEGSARAGLSEQLVALREVYAFKIGDVTNALDAARQAATLEVGEAP 507 Query: 685 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 744 A G+ + A L+ E L L + ++G+ Sbjct: 508 PARSAAHVTYGAALYFSGDIDEARTELQRAVELTERTGDRRHRVYALGYLALIEAESGQL 567 Query: 745 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILR---- 800 +DA+ ++ A + +F+ ++A + + L Sbjct: 568 ADAEHLIRRATGVGPDPAGTQNFIDVAVSLAVSVVLYASGEWAAAADAAHLAVGLARKGA 627 Query: 801 ----------------------EINQHHRHKFAHFDENFVERLLNHPEVPELIR------ 832 E + R + + + HP + + Sbjct: 628 GILEVAKALMVRAKILNDFGDLEAAEKSRSEAGALLRRCPDNVAVHPMIGSAGQGRRVAV 687 Query: 833 --------TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 LT +E +VL L+ + S I L V+ T+KTH R +Y+KLGV +R Sbjct: 688 AAYNDEHIAEDLTSKELEVLRLLATRLSRRDIGQRLYVSLNTVKTHQRAIYRKLGVDNRN 747 Query: 885 DAVQHAQQLLKM 896 AV ++L + Sbjct: 748 SAVARGRELGLL 759 >UniRef50_A5GBS1 Tetratricopeptide TPR_4 n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GBS1_GEOUR Length = 1000 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 149/806 (18%), Positives = 282/806 (34%), Gaps = 22/806 (2%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIGWYS 63 +K+S P TV RERL L + I +PAG GKTTL+S W + WY Sbjct: 10 AKISAPKV-SGTVERERLFRLLDHGREKPVVWIAAPAGSGKTTLVSGWLDNRRIPSIWYQ 68 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 +D GD F Y A Q A + + + P Sbjct: 69 IDSGDADPATFFMYFGLAAQNAAPKKKKKLPVLTPEYLMGIPVFSRRFFEDVFSRLPIPA 128 Query: 124 YLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 +V D+Y + +HE +R I P +T VVLSR ++ +R+ D+L +G Sbjct: 129 VIVFDNYQDAPADSPLHEILRCGIDAAPAGITFVVLSRCDSPPQLSRIRITDRLHFLGWF 188 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 L F+ +E+K + ++ R+ +GWA L L+ S R Sbjct: 189 DLRFSVEESKTMAISHGCADLDDDVLLRLHAKANGWAAGLALLLRSRELGP------VRG 242 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 + + L DY +E+ D ATR FLLK+++ S ++ ++G + L+ + Sbjct: 243 PSLKTPAVLFDYFAEEIFRLTDGATRDFLLKTSLFPSTTVSMAEHISGNNDASAILDRLN 302 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESWMAQGFPSEAI 361 R+ F++ + YHPLF FL R + L ++ R AA G +A Sbjct: 303 REHYFIESHVSDDPVYQYHPLFREFLLNRAKSLFAPDALADMQRDAARLLEQAGQIEDAA 362 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 AGD+ L ++ HA L + E + +LP ++ ++P L+ Sbjct: 363 RLYSDAGDSAGLARLVTRHARELLLQGRNKSIREWMASLPEKTMNDDPWLLYWSGMC-SF 421 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-- 479 L +A + + A G+ ++ ++L Sbjct: 422 PMDLPGTRQYLEQALALFRMNEDLPGIYLSWAGIVDSYAF-GDEWKSLDNCITVFDDLTS 480 Query: 480 -----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 P + +L L + R + + + +++ + + Sbjct: 481 SYPSFPSLEIELVASSRMLLSLTLRKTNQPERVERWLARVSALLQENPSFDIQMDIFSCM 540 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 S +G E+A + + + W A A + Sbjct: 541 SLYYLWKGEYDKNALLLERAVAEV-SHRKASSFAVIRIKLMSGIHYWITADYQAALQALS 599 Query: 595 SGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL-NRLENLLGNGKYHSDWISNA 652 G++V S + +A G+++NA + + ++L++LLG + + Sbjct: 600 EGLDVSAKSGVHLYDSLLWSFKAATEMAAGEMENAENSMKHQLKSLLGMENALNSFWYYI 659 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 712 N +AA ++ +A+ L G A ++ Sbjct: 660 NSAWHALLTGNPSRAAEHMETAFARTESMGTPYYQALWHVAMAQVAFLQGRAGEARTLVR 719 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 + + +++ + +L++ L Q G +++ L L L + G++ + Sbjct: 720 TAHRISLTMKSLVMEWYSLMIDAWLLLQEGEETEGLLSLRRGLSLGRKHGYVHLEFYQPT 779 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRI 798 M + + E + +++ Sbjct: 780 VMRFLFAKALGERIEQEYVKGLIRKL 805 Score = 56.1 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 45/311 (14%), Positives = 84/311 (27%), Gaps = 12/311 (3%) Query: 389 ELSLLEESLKALPWDSLLENP------QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDI 442 + +E L + L ENP + + + Y + LL RA E+ Sbjct: 509 QPERVERWLARVSA-LLQENPSFDIQMDIFSCMSLYYLWKGEYDKNALLLERAVAEVSHR 567 Query: 443 REDTMHA-EFNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHC 500 + + + + A + L+ G + S Sbjct: 568 KASSFAVIRIKLMSGIHYWITADYQAALQALSEGLDVSAKSGVHLYDSLLWSFKAATEMA 627 Query: 501 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 560 GE+ + M+ + + + W I + G A E E AF Sbjct: 628 AGEMENAENSMKHQLKSLLGMENALNSFWYYINSAWHALLTGNPSRAAEHMETAFARTES 687 Query: 561 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQCS 619 AQ+ + R EA R+ + L+ + L + Sbjct: 688 MGTP--YYQALWHVAMAQVAFLQGRAGEARTLVRTAHRISLTMKSLVMEWYSLMIDAWLL 745 Query: 620 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 679 L G+ L R +L Y +R ++ + G++ K Sbjct: 746 LQEGEETEGLLSLRRGLSLGRKHGYVHLEFYQPTVMRFLFAKALGERIEQEYVKGLIRKL 805 Query: 680 EFANNHFLQGQ 690 + L+ Sbjct: 806 GLTPPYPLEEW 816 >UniRef50_A5V4S7 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V4S7_SPHWW Length = 878 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 203/908 (22%), Positives = 332/908 (36%), Gaps = 60/908 (6%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKNDIG 60 +K + PV T+ R RLLA S + RL L+T+ AG GKTT +SQW A + Sbjct: 10 TKFTPPVNWGRTMARPRLLAMASAFEDKRLVLVTAAAGSGKTTFMSQWYAALGEQGRLVA 69 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W SLDE D R S L +++ A + E A ++ Sbjct: 70 WLSLDERDRNPGRLLSLLAESLRLAADEAQLSGERFALNGFELQSDDFIDSFVNAVSLLG 129 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 + +DDY+L P +R +R P NL +V+ SR P LG+A LR + E+ Sbjct: 130 QRTAVFVDDYYLAATPENDLVLREILRLAPPNLLIVLSSRAYPDLGLARLRAYSAMAEVD 189 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 QL F EA F I + C GW LQL +LS + H Sbjct: 190 FDQLRFDGDEATAFMRDVHGIDIGRSGGELFCTRTEGWIAGLQLASLSLK--GREGHVEL 247 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + ++DYL VLD R FL ++A+L + L VTG + Q +E Sbjct: 248 LENFAGSRREVADYLSSFVLDEQSADVRDFLFRTALLDRFDCDLAGAVTGIADAQGMIEL 307 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 +E LF+ +DD W+ YH LF +FLR R E +LP ++ AA G +A Sbjct: 308 VEAANLFIVPLDDQQRWYRYHHLFQDFLRGRAPREG-IDLPAVYAAAVRHCEECGLGEDA 366 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 + +ALA+ D D++ A +L ++ L L+++ + +P+L ++ W + Sbjct: 367 VAYALASRDEAKAADLIAESAMALIYKGDIPRLASWLESVSESVMQSHPRLPTIRCWALF 426 Query: 421 SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP 480 ++ L D + AE L + + ++ ++ L Sbjct: 427 HAGQWEAGEAALGEIAQRRGDGGD---TAEIELLDVAMRVAADELEDILVRGGELVDRLE 483 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 + + + G+ + + + + + D + ++S ++ L A Sbjct: 484 DSAPFLAGTLANFVTMSRIGIGDYETAWSFCDKAGTLLLRADCPYGYIFSRCTRAICLIA 543 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 600 +G A D A A Sbjct: 544 EGKADVA---------------------------------------DAELAKAEQLANRT 564 Query: 601 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 + C C+ RGDL AR QL L+ + Sbjct: 565 AGNISFAAALCRGWRGACAYERGDLLTARQQLEFAVPLIRRCGN-IEIQRRLAVYLSRTC 623 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE-------E 713 GD+AAA + L A ++ R ++LLGE + ++ L Sbjct: 624 AALGDRAAAHDVLDELAASRHGDSAGKTRTTVAAERIRLLLGEEDVRQLRLVWAELDRFA 683 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 E A RL+ D+ + L + + G + A L L+ + ++ EA Sbjct: 684 AREGALPDRLLFDVEISRLRMMIAEGRWGEAAGATPRLAAWLERRQNSARPRAELLLVEA 743 Query: 774 MAQQLRQLIQLNTLPELEQHRAQR---ILREINQHHRHKFAHFDENFVERLLNHPEVPEL 830 Q RQ N L + +R + RE + + + Sbjct: 744 QIQLGRQDAAANRLARQARVTGERFPMVFREAPDPVQALLNGDWDGEGTGPETSDALQLA 803 Query: 831 IRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 L+ RE ++L L+ G+ N+ IA L ++ T+K H+RN+ +KLG +R A Sbjct: 804 ATEHGLSAREGEILSLVIEGHKNKWIARRLGLSEHTVKWHVRNVLEKLGAPNRASAGAMV 863 Query: 891 QQLLKMMG 898 + L Sbjct: 864 RHLELASS 871 >UniRef50_C0ZTT3 Putative LuxR family transcriptional regulator n=1 Tax=Rhodococcus erythropolis PR4 RepID=C0ZTT3_RHOE4 Length = 857 Score = 322 bits (826), Expect = 4e-86, Method: Composition-based stats. Identities = 163/882 (18%), Positives = 302/882 (34%), Gaps = 48/882 (5%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWAAG------KNDIGWYSLDEGDNQQERFASYLIA 80 G+ + L+++PAG GKT L++ WA D+ W +L E DN L Sbjct: 12 EGSGPGSVGLLSAPAGAGKTLLLANWAREYSRASPDVDLAWLTLAERDNNVSVLCESLAE 71 Query: 81 AVQQATNGHCAICETMAQKRQYA---SLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPV 137 A+ + Q + A + L++DD H + +P+ Sbjct: 72 AISTPLDPAGRAPTGQGFPAQAGSSRPVEQWLAHFAETVEAHDRRTTLILDDVHTLHDPM 131 Query: 138 IHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDC 197 + + H P+NL+++V +R P L L + +L S LAF E F Sbjct: 132 SIGLLDQILTHTPDNLSIIVAARYEPPLTWHRLALDGRLTRFASTDLAFDRTEITAMFGE 191 Query: 198 RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVD 257 + E + + + GW ++L A + A ++D+LVD Sbjct: 192 -YDITLGDDELAIVENFTKGWGAVVRLTAAFLAGRSDIGD--ALNEFTHTPRPIADFLVD 248 Query: 258 EVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMD--DTG 315 EVL ++ F+L+++++ S + L +T N + ++ + + + R D D Sbjct: 249 EVLTSLPEHVTTFMLRTSVVDSFSAQLAETLTD-SNARSEIDALIQYNFPVTRTDSADHT 307 Query: 316 EWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRD 375 WF YHPL LR + E H AA + + F EA+ ++ GD + Sbjct: 308 TWFSYHPLLLEHLRAEFRRVDHEERNRAHLRAATWFESHHFELEALELEVSIGDPCRILA 367 Query: 376 ILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARA 435 L L + L++ P + E+P L+ A T L Sbjct: 368 FLERCGLGLVLDGHSGDVVRVLESAP-TQVSESPITRLVLAAAALHSGDVTSATTCLDLL 426 Query: 436 EHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLG 495 E I ++ + + + + N RL + A + Sbjct: 427 EATHPPIADEPLFLAMSLEISCASPTSDNNPLVSRLVR----RQNSTHSDVEAYAHLEVA 482 Query: 496 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 555 L K E R+ Q + + L +L + G ++ A Sbjct: 483 TALLLKREFDRATVEYTQAVALGTLRGRSRFVLKALTGLGFVASLSGDIEAMRAHSTYAI 542 Query: 556 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 615 E + +E + A + A + G S+ + Sbjct: 543 DYAVEHRITTTAEYELSASVVAFAAYLCATSELPYRIPTIGNYR-STDVLGASVPAFGWH 601 Query: 616 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 675 + L +A + + ++ + + + + + Sbjct: 602 TVVTFGLHSLGDAADRRSTAADVRDAMLSAIALRTFSLATLALLPPVVNACLSVGEVEWA 661 Query: 676 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR-SLRLMSDLNRNLLLL 734 A + F + ++ARA + + AE ++E +++ L Sbjct: 662 GRLVRDAADEFGETSEIHLARAAVAFSSNKFAEALVEVSEALGSTEEPVLAHTVYAWTLE 721 Query: 735 NQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR 794 ++ G + + R L AL+ A G + F+ G ++ + E Sbjct: 722 AGIHAATGHERKSFRSLHKALRAAETGGLLRPFLDYGASLRPIFDEFSGHFGDQEA---- 777 Query: 795 AQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNE 854 F E++ N EL+ LT E+ VL + SG + E Sbjct: 778 ----------------------FAEQVRNRIRPQELVSAPILTPGEYTVLRELASGDTTE 815 Query: 855 QIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 IA L ++ TIKTH+R +Y+KL V++R+DA++ A++ + Sbjct: 816 SIADTLFLSVNTIKTHLRGIYRKLEVSNRRDALKAARRGGLI 857 >UniRef50_A5GAS8 Transcriptional activator domain n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GAS8_GEOUR Length = 1082 Score = 322 bits (825), Expect = 5e-86, Method: Composition-based stats. Identities = 151/833 (18%), Positives = 293/833 (35%), Gaps = 31/833 (3%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGW 61 I +K+SRP V R RL A L +A +++PAG GK+TL++ + + W Sbjct: 7 ISAKISRPTL-CKVVQRTRLFALLDEKLAKPVAWVSAPAGSGKSTLVASYLDARELPCIW 65 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLT-----------SLFA 110 Y DEGD F Y+ A ++A + + + T + Sbjct: 66 YKCDEGDADLATFFYYMGLAAKKAAPRYKKPLPLLTPEYLAGIPTFTRRYFEILYSRVMP 125 Query: 111 QLFIELAEWHSPLYLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIAN 169 L+ +V+D+Y + HE PE + ++V+SR+ P + Sbjct: 126 HCSPSLSRMGMGAVIVLDNYQDVPAESPFHEMAATGFDSIPEGVHVMVISRSGPPSACSR 185 Query: 170 LRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSA 229 LR D++ + + FT E+ + R+ ++ ++ + + GWA + L+ Sbjct: 186 LRANDKIGLLRYSDIRFTLAESMELVQRRI-PALDNEHANMLHEKSQGWAAGIILMLE-- 242 Query: 230 RQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT 289 A + + DY E+ D ++ R FLLK+A L ++ L R+T Sbjct: 243 --RAGLGGTGIEGAADLACDRIFDYFAGEIFDRMEQVVRDFLLKTAFLSVLSVPLADRLT 300 Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAA 348 G + L + R+ F +R+ + + + YHPLF FL R + E+ + R AA Sbjct: 301 GSGSAGRILSTLNRRHYFTERLSGSEQAYQYHPLFREFLLNRAETACAPDEVAAVQRKAA 360 Query: 349 ESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLEN 408 G EA AGD L ++ HA L +EE L A+P + Sbjct: 361 LLLEQDGRMEEAARLYGDAGDRDGLGRMVTGHARELLGQGRSKTVEEWLAAIPGGPADDE 420 Query: 409 PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA 468 P L+ L +A + + + T A + + Sbjct: 421 PWLLYWSGMCAIPV-DMPRGRASLEKAFASFRAMGDTTGIYLSWAGIVDTYAFGLDEWQP 479 Query: 469 ERLAKLALEEL-------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 521 EEL P + ++ L + +Q+ + +++ Sbjct: 480 LDGCITLFEELRSIWPDFPSQETDLIASSRMLIALTLRKTDQPQWVQEWLQRVSALLQEN 539 Query: 522 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 581 + + ++ S +G E+A I Q L ++ W Sbjct: 540 PSFDIQMDTMFCMSVYYLWKGEYDKNALLLERAGAEIR-QRKPSPFAVIRLKLMKGIHYW 598 Query: 582 AWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL-NRLENLL 639 A+ D A ++ G+E+ S +A G+ + A L ++ LL Sbjct: 599 ITAQYDAALSTLAEGLEISTESGVLVFDSLLWGFRAAAEMASGNRELASDLLKQQMSTLL 658 Query: 640 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 699 G K + + N +A + ++ +A+ + Sbjct: 659 GMEKTLDSYFYHVNAAWFAILTGVPSRAVEHLDIVAAKAERMGTPYYRALWHIGVAQTEF 718 Query: 700 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 759 +LG + A+ ++ +++++ LL+ + G++++ L +L L Sbjct: 719 MLGHLKEAKKHIQNALRMSQTMKSQVLEWYALLISAWFQLRHGKQTEGLLSLHRSLSLGR 778 Query: 760 RTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAH 812 R G++ + + M ++ P+ + +++ Q + Sbjct: 779 RHGYVHLEFYQPDVMRFLFAVALEEGIEPDYVKGVIRKLGLAPPQPPDCAASA 831 >UniRef50_B6IXM7 Transcriptional regulator, LuxR family protein n=1 Tax=Rhodospirillum centenum SW RepID=B6IXM7_RHOCS Length = 907 Score = 321 bits (824), Expect = 6e-86, Method: Composition-based stats. Identities = 209/925 (22%), Positives = 362/925 (39%), Gaps = 57/925 (6%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKN 57 +IP+KL+ P +L V R L+ +L + RL L+ AG GKTTL+ QW A Sbjct: 11 IIPTKLAPPHQLVDLVDRAGLVGRLEEGRSARLQLVVGAAGSGKTTLLGQWQRQLARAGI 70 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 GW SLDE D SY++ ++ +A + Q + + L ++A Sbjct: 71 PCGWLSLDEDDGDPTHLISYVVLSLARAGVPLGQLTRLAQQGLVDMPCKAALSALVNQIA 130 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 P+ L++DD+H + + + + P NL+LV+ R+ P+L +A L+ Q+ Sbjct: 131 GHGGPVVLILDDFHRAESREVDALLGGLLSFLPANLSLVISGRDRPKLPLAGLKAMGQVR 190 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E+ + L F+ QEA+ + A+ S + + GWA A+QL + + A Sbjct: 191 ELTAGDLRFSAQEARHILHDL----LPDADISALTERTEGWAVAIQLARIWLEAGSDRAR 246 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 R + ++DYL ++VL ++ R FL+++AIL +N L VTG + R Sbjct: 247 LLDRFC--GSTRDVADYLAEQVLADLPEDLRQFLMQTAILERVNADLAEAVTGRGGARAR 304 Query: 298 LEEIERQGLFLQRMDDT--GEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 L + R L +D G W YH L ++LR + AA LP++H A+ + A+G Sbjct: 305 LARLSRLDSLLVPLDGEGSGGWLRYHHLLRDYLRDVLARDHAALLPDLHARASRWFEARG 364 Query: 356 FPSEAIHHALAAGDALMLRDILLNH-AWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 F +EA+ HA GD ++ + WSL + LL L+ P +S L +P+L + Sbjct: 365 FLTEAVRHARLGGDLASAARLVESAGGWSLILSGGIGLLRNLLQNFPAESFLRHPRLGIS 424 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDI----REDTMHAEFNALRAQVAINDGNPDEA-- 468 + +L + LL R + + + + + + +A + A Sbjct: 425 RVYLHIKDGELAQARRLLHRIPGADRPLELIQEQPAFARDALIIGSLLAGYEDAAPTADG 484 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 + ++++P +V L G+L ++ + + Sbjct: 485 LVALRRVIDDMPEDDQIGSGALRTVEAVQLLHLGDLAGVERAGRRALRHMSAANSILGLA 544 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 + L + +G + A T +A + + + + A++L DE Sbjct: 545 YCLFHLGQSALYRGLRREAEATYREAMAIAADNFGADSGLKAVAAVLLAEVLHEAGHGDE 604 Query: 589 AEASARSGIEVLSSYQPQQQLQC--LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 646 A A + + + + + LA+G+ D A + L R E + + Sbjct: 605 ARALIGPALAQIETADGWLDIYASGYRVAAALQLAQGEHDGALAVLARGERTAAE-RGLA 663 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLRHTA------KPEFANNHFLQGQWRNIARAQIL 700 R G+ A A + L + A AR + Sbjct: 664 RLGRLIACERARILTAMGETAWARDALAPLQAELPLMRASPAAWRERHAFLTVQARLLLA 723 Query: 701 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA--------GRKSDAQRVLL 752 G A E E AR + + L+L + + +D L Sbjct: 724 EGHPHAALEAAGEAAERAREAGMTVHRIQALVLKAEAATRLAVESGGPHDTTADPVAELA 783 Query: 753 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAH 812 AL LA G F+ GE +A LR ++ + + A Sbjct: 784 QALTLAAPEGLRQVFLEHGERLAPLLRDCLRRSR-----------------EIGLDSLAR 826 Query: 813 FDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIR 872 +ER L P L+ RE V+ + G SN++IA L + T+K H++ Sbjct: 827 AFAEELERTLARPR----DEADTLSPRERAVVIELCRGASNKEIARALAMTENTVKFHLK 882 Query: 873 NLYQKLGVAHRQDAVQHAQQLLKMM 897 N++ KLGV R A+ A++LL + Sbjct: 883 NIFGKLGVDRRAAAIITARRLLGLS 907 >UniRef50_Q1NHC1 Regulatory protein, LuxR n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHC1_9SPHN Length = 893 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 195/913 (21%), Positives = 328/913 (35%), Gaps = 39/913 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGW 61 ++P+ + P + R L+A R+ ++++PAG GKTT + WA G Sbjct: 3 VVPTAILPPRSTHMPIRRAALVALTERVAQSRMTVVSAPAGSGKTTAMLFWADELRAQGR 62 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 L + A++ A + + S S A + Sbjct: 63 PVLWLAARAGIESKRSFLQALKAAGIAAGMPWDALDSDAADESWLSALATM------GSV 116 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 +++DD + P I E + + LT+++ +R L +A +R L+E+G Sbjct: 117 KPVIIVDDAQFLAKP-ILEFLAQLSSSARDALTIIIAARGTVGLSLARMRALGFLVEVGV 175 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 L+FT EA + + +P+++ E I D GW + + + R+ + SA A+ Sbjct: 176 ADLSFTLAEATELVTRSIGTPVDSRELQDIVGDTQGWVSGIVIACDLYRRTSDSA---AK 232 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 ++Y DEVL R FL+ ++IL + + V G+EN + L+ + Sbjct: 233 LRLTGLRPEFAEYFHDEVLSLQPDDVRRFLVDTSILDELTPSACAAVIGDENARAMLDHV 292 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 R+GLFL +D + YH LF + R +HR A+E + G + AI Sbjct: 293 FREGLFLNAIDQEHSRYAYHRLFREMVLGRLIDRAPDRAAVMHRRASEYFAEAGQLALAI 352 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HA +GD L D L A L L ++E LPW L E P L+L AW Sbjct: 353 EHARLSGDKAFLADQLDRLAEGLTYSGYLYRIDELGAELPWPILAERPNLLLALAWRRIR 412 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAE---------FNALRAQVAINDGNPDEAERLA 472 Q + + L++ A + RE +A + E + Sbjct: 413 QLAFSSADRLISAARQACEAKREAQSLPAHEIEQLDLLIRHRFVMLAAARDDMVRVEADS 472 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + L EL Y + L L L +T + + ++ Sbjct: 473 EPLLAELADSHAYLSCTLLAQLMSARRELYHFQDMLKLEAETSRALSRPGSAFASIALKA 532 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 + + AQG + A E+AF L E H + A+LL+ L++A Sbjct: 533 SVAPTMMAQGKIPLARRFLEEAFALAVEIHGAGSGLAALPALPLAELLYDAGDLEQAAEL 592 Query: 593 ARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 A + V+ + + + ARGDL +A S LN L+ S Sbjct: 593 ADQYLPVVRQWGFSDQMASGYLVSARLRAARGDLPSALSTLNDAH-LVAIECGLDRLRSF 651 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR-------NIARAQILLGEF 704 V G A R R ++ Sbjct: 652 IVAEEVRLLIKAGQIDEAEQHFLAGDPQLDGEPIPTLHPTRRNENIAIAWLRIEMQRHRL 711 Query: 705 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 764 A V E + + LLL ++ G +S+A+R + A+++A ++ Sbjct: 712 GRARKVAYRWLEFVKRAGAVRSAVIFELLLAEIAVLQGNRSEARRAVRAAVEMAEPAAWV 771 Query: 765 SHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 FV EGE +A + + L + + + Sbjct: 772 RVFVDEGEVIASLIIEAYSQGPE-----------LETPADRFAVRLVSMLRRGPQIEADE 820 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 E + T L RE +L ++ G N +I L + T+K +++ +Y KLGV R Sbjct: 821 EEEDDFGLTGRLANREVDILTMVSGGLRNREIGDRLGLTEGTVKWYMQQIYDKLGVRRRP 880 Query: 885 DAVQHAQQLLKMM 897 AV A+QL + Sbjct: 881 QAVLRARQLGILP 893 >UniRef50_A3IBY3 Transcriptional regulator n=2 Tax=Bacillaceae RepID=A3IBY3_9BACI Length = 1062 Score = 319 bits (817), Expect = 4e-85, Method: Composition-based stats. Identities = 165/835 (19%), Positives = 301/835 (36%), Gaps = 37/835 (4%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDI 59 ++I SK P +H + R L+ L ++ LI S AGYGKTT ++Q+ Sbjct: 4 IIIQSKCIAPNPSNHCINRASLMRTLKKSHQHTCTLIHSGAGYGKTTTLTQFLYHESRRF 63 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQ---LFIEL 116 WYS+ + D+ F ++L +VQ+ +T Q ++ + L L Sbjct: 64 SWYSISDEDDTILPFLTHLFFSVQRIVPNFGQTFDTWDQLSRFPKMEELNRWYKLFVNCL 123 Query: 117 AEWHSPLYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLGIAN-LRVRD 174 P+ +VIDDYHL+ + I+ M I P + ++ SR LP I L+++ Sbjct: 124 CNMDEPILIVIDDYHLVDHVFHINYLMEKIIEFAPPTVHFIIASRTLPNWDITRKLKLQK 183 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +LL I ++LAF+++E FF+ ++ + ++E ++I + GWA ++ L+A Sbjct: 184 RLLVITEKELAFSNEEIAVFFEEYVNVHLSSSEVAKILEMTEGWAISISLLAEQWHHAP- 242 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 I + L YL +EV + + +LK AI + + L+ G Sbjct: 243 -----LDHWLTIPTNDLFRYLSEEVYSTMTSTEQEVILKLAIFPNFSAKLLEDFYG-SEL 296 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 L ++ +F+Q G + +H LF FL + Q + ++H+ AA ++ Q Sbjct: 297 AQMLNPFTQRHVFIQPATTDG-IYRFHALFSRFLEIKWQQ-YPHQYNDLHQQAALFYVDQ 354 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 A++HA + ++L HA L + L E + + +L Sbjct: 355 HNVQAALYHAFKTNNPNFCGELLQLHAEPLIRAGQFEWLLEKINRFTVQEKTKFYKLYYF 414 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + + + Y + + + R+D + A A + ++ P AE + Sbjct: 415 EGECHRYRAFYEKAKQSYEKCATIAQRQRDDVYVTKAQAGLAHIYLDTIQPALAEPHLEK 474 Query: 475 ALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 ALE P + E L G+ + + + + Sbjct: 475 ALELAKYTPLPKTELVELQRQYAENLVNLGKAKGAQLFIDNVA-------LPEDVVQRAN 527 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 +L G LQ A E K +L + + H + A + +A + Sbjct: 528 VDVRVLLRTGQLQEAKELLGKRLEL----PPQLVATHRESELLAAFVYTLLGEGKDAWYA 583 Query: 593 ARSGI-EVLSSYQPQQQLQCLAMLIQCSLA--RGDLDNARSQLNRLENLLGNGKYHSDWI 649 A+ GI L + L D A + L+ S Sbjct: 584 AQHGIQRGLREKSVFIEAVGYIRKAHALLLMEYSDYQGACHAYEKALTLMNTINI-SRVK 642 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ--ILLGEFEPA 707 + I M GD AA +L + +A + + E A Sbjct: 643 AEPYMGLAIVKHMLGDMEAAKKYLALGLQETEQVQDAWMTALILLAEVKINVSQHETAQA 702 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 + +L + + + + L L + + +Q Q +L G+ Sbjct: 703 KELLIKAQQLFQECGDRNGLMHVLFYQSVIAFQEKSIEQFQSSFQQFAQLCMTNGYHYFL 762 Query: 768 ---VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE 819 +I G + +L+Q + E+H A LR+ Q DE ++ Sbjct: 763 QKKMILGPSNQMIFYELLQYSQQCGSEEHAAIVGLRQFLQAEDSMSYSHDEIQLQ 817 >UniRef50_D1CIB7 Transcriptional activator domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIB7_THET1 Length = 1108 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 156/829 (18%), Positives = 295/829 (35%), Gaps = 29/829 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGW 61 +I SKLS P + + R L+A + +L+L+T+P GYGKTT +S +A W Sbjct: 6 IIRSKLSAPAQKSGIIHRRALVAWFARMQRHKLSLLTAPPGYGKTTTLSLFAQRHPRTVW 65 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 Y+L D F +L+AA+ E + Q + L + + + + Sbjct: 66 YTLSSADEDPSVFLQHLVAAMGTCC--VLGEGEDPSAWLQGSDLDRALLGIIHAM-QGSA 122 Query: 122 PLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRDQLLEI 179 LV+DD+ + + + + I + P+ + + SR L I LR +LL + Sbjct: 123 GFALVLDDFDCVRDQREVLRLLDSLITYSPQQVVFTLASRTRVHLPCIPKLRASGRLLRL 182 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 S+ F+ ++ Q + + + + GW ++++A + Sbjct: 183 DSEIFRFSREDVAQLLRAE-GVHLGTDDLETVYELTEGWPLGVRIVAQYLASGATLSD-- 239 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 R S L +YL EV+ F+L+S+ L ++ AL+ +V G + Q LE Sbjct: 240 LRAKLAYRGSELYEYLAQEVISKQPSEVVSFMLESSPLPTLEPALLDKVLGRNDSQQMLE 299 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 ++E +GLF+ R+ + YHPL ++L ++ + A + E+ R AA + +G P Sbjct: 300 DLEERGLFVSRLGEDKL--RYHPLVRDYLLRQARAAG-ARVAEVARRAARYYDTKGEPEH 356 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ L D + +L A S L +++++P L + P+L +A + Sbjct: 357 ALELWLLGEDYDEIYSMLARWAPRWLREGHYSRLLRAIESIPAPRLEDYPELTYYKARAL 416 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL 479 Q+ + L A ++ + + RA + G A L L Sbjct: 417 QAMGKLHTAFELYGEAARRFEEEGDGNWVSRALLGRASIYREKGQISRAGDTYFRVLSLL 476 Query: 480 PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS-EIL 538 P +R +LG G L + ++ ++ + + + Sbjct: 477 EPEDISTRAEVVMMLGISDAASGLLGSAERRLRDALELYELGEDADGQFHVWNNLAQVVY 536 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 +G A E KA Q+ E L+ A +L+ A A + Sbjct: 537 LRRGDFPRALEAASKARQIATE--LDADVYIASANATLATVLYMQGDYARARQLADANYN 594 Query: 599 VLSSYQ-PQQQLQCLAMLIQCSLARGDLD--NARSQLNRLENLLGNGKYHSDWISNANKV 655 + S + + L + D D A+ + + N + + + A Sbjct: 595 LASRLGNQAETIDALVVRAHTLRYGSDRDKRAAKELYSDVLNRMSILETNRHLAVEALLG 654 Query: 656 RVIYWQMTGDKAAAANWLRHTA--KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 ++ GD A + + A + F Q A ++ E A + Sbjct: 655 LSSLHRLLGDPKGAEGYAQQAATTAERIGHEWFRQVCLLETASILAMMNRREEAIAMASA 714 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 E RS +LLLL L + + LK+ G+ + E Sbjct: 715 CLEWFRSCGDRYHQAHSLLLLAYL----------EGEVEPMLKVVEEGGYWALLSRERYF 764 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 L + E + + ++ + + ++ Sbjct: 765 ALPLLVSALGNAGTAEAAKRALLTMGSDVLGDAHNWLLGDAADESQQGG 813 >UniRef50_UPI0001C4276F hypothetical protein BpOF4_03975 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4276F Length = 1082 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 133/770 (17%), Positives = 274/770 (35%), Gaps = 29/770 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI-G 60 ++ +K P++ + R +L+ +L L LI + GYGK++ +S + + + Sbjct: 9 VLRTKFIPPLQRSSMIYRPKLMKQLKQIEECPLTLIHTGPGYGKSSALSSFLDTSDKLSC 68 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFA----QLFIEL 116 WYSL + D F +++ AV++ + + + EL Sbjct: 69 WYSLSKQDENFFHFIVHVVHAVREKFPHFGSELIEYLISGEVEGWEEELDYICIEFCNEL 128 Query: 117 AEWHSPLYLVIDDYHLITNPVIH-ESMRFFIRHQPENLTLVVLSRNLPQLGI-ANLRVRD 174 + P V+DD H+ + + ++ I P N+ +V+ R P + + Sbjct: 129 LQLKKPFVCVLDDIHITERSELVKDWLQLLIESAPANVHIVLAGRVRPTWDVITRRLLNG 188 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 QLLE+ F+++E + E I GWA ALQ++ + H Sbjct: 189 QLLELTETDFIFSNEEIDVLLSDVFNIDCTPEELIEIEKATEGWAIALQMLGQ--QWKEH 246 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 ++ + L +L E + FLL++++ N+ L V + Sbjct: 247 GEVQAVLQDGLETTDELFRFLTMEAFSRQPEEIKKFLLETSLFEEFNEKLCQTVFEAVHA 306 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 + + +Q LF+ + + + YH LF +FL ++ + + A + A Sbjct: 307 GNYITHLIQQNLFVVEIGKSQ--YRYHALFRDFLLRQLSK-NPILQDNLLQRVACYYKAA 363 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G +++ + AGD +L++ L ++ ++ L +L ++P E L L Sbjct: 364 GDYEKSLEVYMRAGDYREASALLVHEGIRLLHNGKMEGLMVTLDSIPEIMKDEYWLLWYL 423 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 + + + ++ + T + E ++ ++ + RAQ+ ++ P +A+ + Sbjct: 424 EGEMNRYYSKFEQAMTCYRKLEELAEEKQDAEGLSLSMEGRAQIYLDTIQPVKAQPYLQK 483 Query: 475 ALEELPPGWFYSR--IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 A+ + + S++ E L GE+ + + + + + H ++ Sbjct: 484 AINYMERTNTSVERKVRLYSLMSENLLNLGEVKEVESWLVKIQAV-------HPEYKNIE 536 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 +S L G TA E ++A + L H + + L + A+ Sbjct: 537 LESRYLLRTGQFHTAKELLQEAKLYEKDHKL--SSSHREGDLLLSLLNSLMGLTEHAKKQ 594 Query: 593 ARSGI-EVLSSYQPQQQLQCLAMLIQCSLARGDLDN--ARSQLNRLENLLGNGKYHSDWI 649 A + I + P + A + D D A L+ + K Sbjct: 595 AEAAIVGGVQRRSPFVEAVGWARMGHAVQLLDDYDPSLAIQCYETSLKLMSDLKMSRGK- 653 Query: 650 SNANKVRVIYWQMTGDKAAAANW--LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPA 707 S A + + G+ A + + +A G+ A Sbjct: 654 SEAYMGLCLLYGKQGEYDKALRIGKVALEEPERVKDRWLSGLVQLALALVTFKQGDLIEA 713 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 757 E L + RS L L+ LY + S ++ + L L Sbjct: 714 EKRLNGCEKTFRSCGESFGETVTLYWLSSLYLRQENSSAFKKTITRCLTL 763 >UniRef50_P95078 Probable serine/threonine-protein kinase pknK n=18 Tax=Corynebacterineae RepID=PKNK_MYCTU Length = 1110 Score = 314 bits (806), Expect = 7e-84, Method: Composition-based stats. Identities = 168/783 (21%), Positives = 294/783 (37%), Gaps = 18/783 (2%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDI 59 +K V V R RL L RL LI +P+G+GK+TL +QW + Sbjct: 333 ATKYRPSVPTGSLVTRSRLTDILRAGGRRRLILIHAPSGFGKSTLAAQWREELSRDGAAV 392 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W ++D DN + F S+L+ ++++ + ++ + + L E+ E Sbjct: 393 AWLTIDNDDNNEVWFLSHLLESIRRVRPTLAESLGHVLEEHGDDAGRYVLTSLIDEIHEN 452 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 + +VIDD+H +++ ++ F + + +L L+V S + L + LR+ D+L EI Sbjct: 453 DDRIAVVIDDWHRVSDSRTQAALGFLLDNGCHHLQLIVTSWSRAGLPVGRLRIGDELAEI 512 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 S L F EA + + A+ + GWA AL+L ALS R + Sbjct: 513 DSAALRFDTDEAAALLNDAGGLRLPRADVQALTTSTDGWAAALRLAALSLRGGGDATQ-- 570 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 R + + ++L + VLD ++ R FLL +++ L + + G NG+ LE Sbjct: 571 LLRGLSGASDVIHEFLSENVLDTLEPELREFLLVASVTERTCGGLASALAGITNGRAMLE 630 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 E E +GLFLQR +D WF +H +F +FL +R + + + E+HR A+ + G+ E Sbjct: 631 EAEHRGLFLQRTEDDPNWFRFHQMFADFLHRRLERGGSHRVAELHRRASAWFAENGYLHE 690 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ HALAAGD D++ +L S+++ L ++ LP ++ +L L AW Sbjct: 691 AVDHALAAGDPARAVDLVEQDETNLPEQSKMTTLLAIVQKLPTSMVVSRARLQLAIAWAN 750 Query: 420 QSQHRYGEVNTLL-----ARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 R L A E+ + + + AE + LRA + + + L Sbjct: 751 ILLQRPAPATGALNRFETALGRAELPEATQADLRAEADVLRAVAEVFADRVERVDDLLAE 810 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 A+ A + C+ E L+ +++ + Sbjct: 811 AMSRPDTLPPRVPGTAGNTAALAAICRFEFAEVYPLLDWAAPYQEMMG-PFGTVYAQCLR 869 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 + + A + AF++ + A+LL+ L A Sbjct: 870 GMAARNRLDIVAALQNFRTAFEVGTAVG-AHSHAARLAGSLLAELLYETGDLAGAGRLMD 928 Query: 595 SGIEVLSSYQPQQQLQC-LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 + S L + + A+GD + A +L+ + + N Sbjct: 929 ESYLLGSEGGAVDYLAARYVIGARVKAAQGDHEGAADRLSTGGDTAVQLG-LPRLAARIN 987 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG---EFEPAEIV 710 R+ AA T + + A + G + + A Sbjct: 988 NERIRLGIALPAAVAADLLAPRTIPRDNGIATMTAELDEDSAVRLLSAGDSADRDQACQR 1047 Query: 711 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 770 L R + +L + GR+SDA+ L G V Sbjct: 1048 AGALAAAIDGTRRPLAALQAQILHIETLAATGRESDARNELAPVATKCAELGLSRLLVDA 1107 Query: 771 GEA 773 G A Sbjct: 1108 GLA 1110 Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 38/339 (11%), Positives = 79/339 (23%), Gaps = 18/339 (5%) Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 ++ + +L A E A Q + +RA R++ Sbjct: 744 LAIAWANILLQRPAPATGALNRFETALGRAELPEATQADLRAEADVLRAVAEVFADRVER 803 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 + + + P+ ++ R + L+ Sbjct: 804 VDDLLAEAMSRPDTLPPRVPGTAGNTAALAAICRFEFAEVYPLLDWAAPY--QEMMGPFG 861 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHT---AKPEFANNHFLQGQWRNIARAQILLGEFE 705 A +R + + D AA R A++H + +A G+ Sbjct: 862 TVYAQCLRGMAARNRLDIVAALQNFRTAFEVGTAVGAHSHAARLAGSLLAELLYETGDLA 921 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A +++E + L ++ ++ G A L A + G Sbjct: 922 GAGRLMDESYLLGSEGGAVDYLAARYVIGARVKAAQGDHEGAADRLSTGGDTAVQLGLPR 981 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQH----------RAQRILREINQHHRHKFAHFDE 815 + L L + + D Sbjct: 982 LAARINNERIRLGIALPAAVAADLLAPRTIPRDNGIATMTAELDEDSAVRLLSAGDSADR 1041 Query: 816 NFVERLLNHPEVPELIRTSPLTQREWQVL---GLIYSGY 851 + + PL + Q+L L +G Sbjct: 1042 DQACQRAGALAAAIDGTRRPLAALQAQILHIETLAATGR 1080 >UniRef50_B0RP73 HTH-type transcriptional regulator, LuxR family n=4 Tax=Xanthomonas RepID=B0RP73_XANCB Length = 921 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 200/915 (21%), Positives = 335/915 (36%), Gaps = 47/915 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-----AAGK 56 L+ SKL P+ VVR LLA L A L L+ +P G+GK+TL++QW A Sbjct: 24 LLASKLEPPLPRVGAVVRGGLLAVLDQAQARPLTLLLAPPGFGKSTLLTQWHAQLLAREP 83 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W SLDE D + RF +L A+Q A + + L L Sbjct: 84 VAVAWLSLDEEDAEPARFLGHLALALQGAGADPALCAPALHGR--DHDPRDALNALIRAL 141 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + +++DDY I E + I H L L++ +R +P L +A L ++ +L Sbjct: 142 RAAPRRISVILDDYDRPGGSAIDELVLRLIEHAGGRLHLLLSTRRVPGLPLARLELQAKL 201 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 +GS +LA EA+ + + A E + GW AL L L Sbjct: 202 TRVGSGELALDEDEAQALL----GAQVAAPEVDELRRYTEGWPVALHLARLWLEGGAQRQ 257 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + A R +G NA ++ YL ++V++++D TR LL+++ L +N AL V ++ Sbjct: 258 QEVATRFSGRNA-QIAAYLAEQVVNDLDADTRDLLLRTSPLERVNAALADAVRQRDDSGR 316 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L +E L +D EWF YHPLF +FL+Q E A +IH+ AA + + Sbjct: 317 LLAGLEHFHGLLIPLDGEREWFRYHPLFADFLQQLLDREHPAGALQIHQRAARWFGEHQY 376 Query: 357 PSEAIHHALAAGDALMLRDILLNHA-WSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 S+A+ HA + + W L + L+ ++ + P L L Q Sbjct: 377 LSDAVRHASRGECGDLAASYVARAGTWQLLLTHGTHQVRALLRHFDHRTIRDTPALNLTQ 436 Query: 416 AWLMQSQHRYGEVNTLLARAE---HEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLA 472 A L + LL R +++ + ALR ++ GNP ++A Sbjct: 437 AHLHMKLGEFSHARLLLERFRDFPAALREPLQRDYTVVVAALRERLDEICGNPHGLTQIA 496 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 A L R + + +G + + + +L+ Sbjct: 497 GQA-AALDEDDHLGRGMLLCICAATALAQGGFALAERYAHGGREAMGRGGSELGTGHALL 555 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 + F +G L A + A + + AQL + D+A Sbjct: 556 VLGQSFFYRGRLGDAEACYQHALNGCLRAPQPDRVLQATAHCLLAQLHYERGHHDDAADL 615 Query: 593 ARSGIEVLSSYQPQQQLQCLAM--LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 +++L + + + R + + L + +G+ + Sbjct: 616 LHPALDILEQHDGSTDVLAAGYDTALGLERLRDHSGRSAAALLEHVEQIAHGRKLARLSE 675 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFA--------NNHFLQGQWRNIARAQILLG 702 A R++ AA + T +AR L G Sbjct: 676 LAAAWRLMVMLEHPGNAAIDVLIARTGGESGLAHTLRSPHRWRDRAAMGFALARWHRLAG 735 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 A +L ++ + + + L R + + Q G + A L AL T Sbjct: 736 RSSAALTILGQIEQACLASDNLCHLARTRARIALVLQQRGELAAALPYLYSALDHVALTR 795 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 G LR L Q + RA ++ LL Sbjct: 796 SWQAIAELGLPAKAMLRSLRQHDPQTVAGTTRA--------------------LTIQALL 835 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 + + ++RE +VL + GYSN+QIA L ++ T+K H++N+Y+KL Sbjct: 836 DRLSGDDDPANDLFSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDARS 895 Query: 883 RQDAVQHAQQLLKMM 897 R+ A+ A Q + Sbjct: 896 REGALAQALQRGLLR 910 >UniRef50_A3TJL4 Regulatory protein, LuxR n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TJL4_9MICO Length = 844 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 194/769 (25%), Positives = 307/769 (39%), Gaps = 33/769 (4%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG---KN 57 +++ +K+ RPV V R RL L + RL L+ +PAG+GKTTL++QW Sbjct: 2 VVLGTKIHRPVPRRDLVHRPRLTDLLGRPQHPRLVLVAAPAGFGKTTLLTQWLGSTTTGT 61 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQAT---NGHCAICETMAQKRQYASLTSLFAQLFI 114 + W SLDEGDN RF +L+AA+ + +A + + Sbjct: 62 AVAWLSLDEGDNDPRRFLEHLLAAISVIGGFTEATDLLASANHGPPGHALTDLVLTSIVN 121 Query: 115 ELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRD 174 +L + + +DDYH+IT+P + S+ F + H P + TL + +R P L + LR R Sbjct: 122 DLDTHPADTVIALDDYHVITDPDVQRSVAFLLEHVPRHATLAIATRADPNLPLPRLRARR 181 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 +L+EI + +L FT EA F + + +++ + GW LQL LS R + Sbjct: 182 ELVEIRAAELRFTPDEATAFLADAMQLDLTDDQATALATRTEGWPAGLQLAGLSLRGTSD 241 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 + A + DYLV+EVL + A R FLL +++L + L VTG ++ Sbjct: 242 TVRFVADF--AGTHRFVLDYLVEEVLGHQPEAVRRFLLDTSVLDELTGDLCDAVTGRDDS 299 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 LE +ER LF+ +DD +W+ YH LF + LR R + A +P +HR+A++ + A+ Sbjct: 300 AAVLESLERDNLFVVPLDDQRQWYRYHHLFADALRARLAAQDPARVPALHRSASDWYAAR 359 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 +A+ HALA D ++ + LL + ALP + + ++ L + Sbjct: 360 SRSEDAVRHALAGNDPGHAAYLVEQALPDVRRERRDVLLRQWSAALPDNVIRDSALLSIC 419 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIRE--------------DTMHAEFNALRAQVAI 460 +AW V L AE + T+ A RA A Sbjct: 420 RAWTRLIAGDPDGVEAWLEDAERAMVTHPPTPEPGASVATLEELRTLPATIAIYRASAAQ 479 Query: 461 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 520 G+ R A+ AL+ P +R A LG +G+L ++ Q Q Sbjct: 480 ARGDAAATTRHARTALDLTGPEDHMARGGALGFLGLGAWARGDLAEAVTTFSQALQSLAA 539 Query: 521 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 580 AL + + A+G A E+A + L L A +L Sbjct: 540 AGDVSDALGGTVGLGSMWQARGRPDEARRLFERALDTAGQGRGAALATLGDLHVGLASVL 599 Query: 581 WAWARLDEAEASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 639 LD A + + S P+ + + A+ A G+LD A L+R E L Sbjct: 600 VEQGELDAAAEHLTTATSLGESASLPENRFRWCAVSSDVHRAHGELDAAVDLLDRAEELR 659 Query: 640 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN-HFLQGQWRNIARAQ 698 G Y + R G A W R A E + H + + R Sbjct: 660 LPGYYPD--VRPIPAARARLHLEQGRLDDARAWARDVAVAEVEHPGHLDEYAQLTLVRLL 717 Query: 699 ILLGEFE-------PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 740 + E + A L+ L +A + L L + Sbjct: 718 LAEHESDGNPTHMAEALRRLDALEPDATRGGRDATLTDIARLREAARGR 766 >UniRef50_Q46UJ4 Regulatory protein, LuxR n=2 Tax=Bacteria RepID=Q46UJ4_RALEJ Length = 1336 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 191/942 (20%), Positives = 324/942 (34%), Gaps = 75/942 (7%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDI 59 +KL P + RE L+ +L A R +I AG GKT+ + W D+ Sbjct: 407 SAKLLPPRHARKLLPREGLMNRLLDARRQRCVVIQGQAGAGKTSTLMAWRKALISLGFDV 466 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNG-HCAICETMAQKRQYASLTSLFAQLFIELAE 118 W SL DN+ RF L+A++ + + ++ L L Sbjct: 467 SWLSLAAEDNEPTRFFDCLLASLAEIDPAMARDAAMQVGGAEDDDAIEQWVIALVQALGP 526 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 L L+IDD H IT+ I+ +++ + + P +L L SR+ L + LR + L E Sbjct: 527 RERELVLMIDDLHHITDARIYRALQRLLDYAPPHLHLAFSSRSALSLALEALRAQGLLTE 586 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I + L FT +E+ +F + +L I +++ + GW LQL A+ R + + Sbjct: 587 IDMRDLRFTAEESARFLEEQLG-TIAPRDAAALHALTDGWVAGLQLFAVDLRARRSADYP 645 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG---- 294 + + + EVL + L + + L T + GE Sbjct: 646 ---LTKVRDPRTFAAFFEREVLGLLAPDDLELLTRMSTCHRFCADLCTAMPGETETPSRI 702 Query: 295 QMRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWE----------------- 335 RL +E LF+ ++D D W+ HPL L R + + Sbjct: 703 GDRLARLEADNLFITQVDTHDRDVWYRIHPLLRETLLARLETDKDDAADAVDMSDPDTAE 762 Query: 336 ----------------LAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLN 379 E+H AA + +G +A++HA+ AGDA ++ Sbjct: 763 TPNDMADASRANDEPCAHGTARELHAAAWRWFDRRGHLDDAVYHAVRAGDADAAATMVEG 822 Query: 380 HAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEI 439 +L EL L ++ LP + L L+ L ++L + L R + Sbjct: 823 CGHALLKRGELPQLLGLVRRLPREQLQNRFGLLALVSFLQLYMRDVDGLGRSLERLDPLC 882 Query: 440 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 499 D LRA A+ +PD + P +VL + Sbjct: 883 -DRSNAVHQYVVCLLRAGHAVQVDDPDTVLGMLPALWAIPPEADDLWWTARRNVLSWLFI 941 Query: 500 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 559 +GE + L TE R+ V +L+ + L +G ++ A + + + Sbjct: 942 LRGEFDEARRLQDDTE---RRSSVPRSSLFGRYITAMSLVMEGEIERAGRSAREVLRESE 998 Query: 560 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ-PQQQLQCLAMLIQC 618 Q L + + A +L+ + A I +L P L+ L +L Sbjct: 999 RQGATFLGLTCMAAGLLADILYELNDHEGACQLLEPRIGMLERVSLPDVVLRALTLLSNA 1058 Query: 619 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 678 G A + L+RLE + A +R+ + A R + Sbjct: 1059 HWLAGRRTQASACLDRLEAYAAR-NNLDRLQTEALTLRLRRHLQQAETERANTVFRQVQQ 1117 Query: 679 PEFANNHFLQGQWRNIARAQILLG-------EFEPAEIVLEELNENARSLRLMSDLNRNL 731 R+IA A + E + + Sbjct: 1118 LAQRYAGETGTVARHIALAAARAEVEMSLYTQDYATAAARLEALLAREAGAKPLRIAALW 1177 Query: 732 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 791 L L G A+ L AL++ + G I + Q +L + Sbjct: 1178 LQLALARHATGNTRGARPAFLSALRMGHGAGLIRTLLDVTGGAPQVFLELAGEGIDEPVL 1237 Query: 792 QHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGY 851 A+R+ E + L++RE ++LGL+ Sbjct: 1238 AFYARRL--------------QAAAVASGAAISRPADEAAPIAVLSEREREILGLLAQAM 1283 Query: 852 SNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 SN++IA L V+ T+K H++N+Y KLGV R A + + Sbjct: 1284 SNKKIASVLNVSPETVKWHLKNIYAKLGVNGRGRAAARLRDI 1325 >UniRef50_Q1Q7C6 Similar to ATP dependent transcriptional activator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q7C6_9BACT Length = 1113 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 139/809 (17%), Positives = 269/809 (33%), Gaps = 23/809 (2%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYS 63 +K++RP RERL + + + I++PAG GKTTL + + + WY Sbjct: 37 AKITRPKIAGIF-PRERLFRLMDKGRDKPVIWISAPAGSGKTTLAASYLNSRKLSYLWYR 95 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 +DEGD F + AV++A H + + Q + + SP Sbjct: 96 VDEGDADIATFFYSMGIAVKKAVPSHRKPLPLLTPEYQQSIPLFTKRYFEELYSRLTSPW 155 Query: 124 YLVIDDYHLITNPVI-HESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 +V D+ + H+++ + P+ ++++ +SRN P A++ ++ IG + Sbjct: 156 IIVFDNIQDAPVNSLFHKTLTSSLDIIPDGISIIAVSRNDPPPHYASISANNKSHLIGRE 215 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 ++ FT +E+K+ I +R+ GWA L LIA R Sbjct: 216 EVRFTMKESKEILLVGAKKRIANTSLTRLYTQTEGWAAGLVLIAEHIRTKG----LDDTL 271 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 +G DY +E+ D T+ FLLK+A L M + ++TG L E+ Sbjct: 272 RSGSIYEKAFDYFANEIFIKTDKKTQIFLLKTAFLPRMTIHMAEKLTGVSESGRILHELT 331 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESWMAQGFPSEAI 361 R+ F + YHPLF FL R + L + R AA G +A Sbjct: 332 RKNYFTTAHYQKETIYQYHPLFREFLLSRARDSFDTGRLSAMQRKAAALLGKSGQIEDAA 391 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 + GD L + +HA SL L E + +P ++ P ++ + + Sbjct: 392 LLFINVGDWDGLIKLTCSHASSLIAQGRTKTLVEWITNIPEETRDNEPWILYWHG-VCKL 450 Query: 422 QHRYGEVNTLLARAEHEIKD--IREDTMHAEFNALRAQVAINDGNPDE---AERLAKLAL 476 + E RA + + + + A+ + P A + Sbjct: 451 SYNLTESRGCFDRAFMQFRAWNEQTGMWLSWSYAVDTIFHEFEDFPRLDNYASLFDDIFQ 510 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGE-LTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 + P F + ++ + + ++ + L + Sbjct: 511 KRTPFPSFEVELRVLPCRFFIMAMREPNHPEIDKWAHRVFLCLQECREVNLRLQLGFHLA 570 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR-AQLLWAWARLDEAEASAR 594 G + + + LPM L A W ++ + Sbjct: 571 VHYLWMGDFANVGIVINSISEGLRSE--TILPMERLLWENTKAMYAWLTGSVESCLRTVS 628 Query: 595 SGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 +++ L+ +L+ GD++ A + ++ + L + + + Sbjct: 629 EALKLSCETGIHFWDHHLLSFAACAALSDGDIETANGMIRKIASGLTHARKIDIIFYHFL 688 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 AA + + + + A GE+ A L Sbjct: 689 CAWRDLTSGNLSSAAEHMRIHTSLVAKIGAYLPVAVNHVAAAHIFAARGEYREAISWLNR 748 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGR----KSDAQRVLLDALKLANRTGFISHFVI 769 + R + + LL L + + + L A+ FI+ F+ Sbjct: 749 AQQIGRQTKSKLIKHMCLLTKAWLALECSGKGTSEEEGLAALRKAMSFGREHRFINCFLW 808 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQRI 798 E +++ + ++ E + + Sbjct: 809 RPEVVSRLCIKALEAGIEAEYVRELVRTR 837 >UniRef50_UPI0001694022 transcriptional regulator, LuxR family protein n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694022 Length = 590 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 134/602 (22%), Positives = 254/602 (42%), Gaps = 21/602 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGW 61 L+ +KL PV V R L KL ++ ++ ++ AG GKTTL++ + + D+GW Sbjct: 6 LLSAKLKAPVLRKQFVPRTELYRKLDMLSDRKVTVVQGLAGSGKTTLMTSYMRERPDLGW 65 Query: 62 --YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQK-RQYASLTSLFAQLFIELAE 118 +LDE +N F Y I +++ + TM + Q +L L L +L E Sbjct: 66 RWLTLDETNNDVRSFWYYTIEVLKELLDQEPDHLLTMFEAISQKPNLDHLLVLLVNKLEE 125 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 + LV+D++H++ + + +S+ FF+ PE++ LV+L+R P+L + + + LE Sbjct: 126 CGAAGTLVLDNFHVLNDTALLQSLSFFLNFSPESIRLVLLTRETPKLYLGDFAMSGLYLE 185 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I ++LAFT +EA F L +E + + ++ GW LQL AL+ TH+ + Sbjct: 186 ISERELAFTQEEADLFLTQTLGLKLEPSAADKLYHWTEGWVGGLQLSALALGHRTHTLTE 245 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 G ++ +YL +E+L +V + F+L++++L N+ + R+ G N + Sbjct: 246 PV----GKLNKYMINYLSNEILLSVSETEQQFMLQTSVLTYFNETICNRMLGINNAATVI 301 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 ++ + LF+ +D+ + YH +FG FLR + + + +H AAE++ Sbjct: 302 AKLLEKHLFVFTVDEEKGLYRYHQVFGEFLRGKLRERGTDVIRLLHYKAAEAYEEMDSWE 361 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 E++ H L A + +L N L +P D L + L+ + + Sbjct: 362 ESLQHYLQAENYQEAVRLLSASGHRFQN-------WTYLLQIPLDVLSCSRPLMFQRLFY 414 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 ++ +++ I + ED + + F + + E Sbjct: 415 HFCNLEIDDMRQIVS----LIPNQEEDGLWSLFQFCCFLLGDKTFDLPAGMEWLNDW--E 468 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 +R + G +L K E ++ Q + + L + ++L Sbjct: 469 TIEIDDVTRAIILVTGGTMLALKDEFGMAMNWFDQAMLLEELSPNPYLRFSVLSSRVQVL 528 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 G L T E+ F L + + PM + +L+ AE + + Sbjct: 529 ETLGELTTCLSLYEEMFCLCDNYPMLD-PMRAVTWIGLTGIRLKMMQLELAEETMAATRR 587 Query: 599 VL 600 +L Sbjct: 588 LL 589 >UniRef50_P17051 Regulatory protein alkS n=3 Tax=Pseudomonas RepID=ALKS_PSEOL Length = 882 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 155/900 (17%), Positives = 303/900 (33%), Gaps = 52/900 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS-QWAA---GKN 57 L+ +K+ + R RL ++ R+ L +P GYGKT ++ +W Sbjct: 22 LVSAKVH------SCIYRPRL--SIADGAAPRVCLYRAPPGYGKTVALAFEWLRHRTAGR 73 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 W SL + + +I ++ T + A L L + L+ + Sbjct: 74 PAVWLSLRASSYSEFDICAEIIEQLE--TFEMVKFSRVREGVSKPALLRDLASSLWQSTS 131 Query: 118 EWHSPLYLVIDDY-HLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + +D+ H + P++H M F + + P+N+ V + G + L++ + Sbjct: 132 NNEIETLVCLDNINHDLDLPLLHALMEFML-NTPKNIRFAVAGNTI--KGFSQLKLAGAM 188 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 E + LAF+ +EA + + + + +V GW + + H + Sbjct: 189 REYTEKDLAFSAEEAVALAEAESVLGVPEEQIETLVQEVEGWPALVVFLLKRELPAKHIS 248 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + +Y DE+ + + R FL S++L + V NG Sbjct: 249 AVV----------EVDNYFRDEIFEAIPERYRVFLANSSLLDFVTPDQYNYVFKCVNGVS 298 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 ++ + + L+ + F HP+ NFLR+ E A+ + + AA +G Sbjct: 299 CIKYLSTNYMLLRHVSGEPAQFTLHPVLRNFLREITWTENPAKRSYLLKRAAFWHWRRGE 358 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSL-FNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 AI +L A D + L F E+ L + L LP + + P +++ Sbjct: 359 YQYAIRISLRANDCRWAVSMSERIILDLSFRQGEIDALRQWLLELPKQAWHQKPIVLISY 418 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 AW++ + L+ + + + A +E L Sbjct: 419 AWVLYFSQQGARAEKLIKDLSSQSDKKNKWQEKEWLQLVLAIGKATKDEMLSSEELCNKW 478 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 + + A + L + + ++ Q + + + W + + Sbjct: 479 ISLFGDSNAVGKGAALTCLAFIFASEYRFAELEKVLAQAQAVNKFAKQNFAFGWLYVARF 538 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 + A G + A + +A Q +E + + +L + LD +E Sbjct: 539 QQALASGKMGWARQIITQARTDSRAQMMESEFTSKMFDALELELHYELRCLDTSEEKLSK 598 Query: 596 GIEVLSSYQPQQQL--QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS-DWISNA 652 +E +S++ C A+ L R DL+ + L + + +S Sbjct: 599 ILEFISNHGVTDVFFSVCRAVSAW-RLGRSDLNGSIEILEWAKAHAVEKNLPRLEVMSQI 657 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 712 + + Q H + + F A Sbjct: 658 EIYQRLVCQGITGINNLKTLEDHKIFSGQHSAPLKARLLLVQSLVLSRDRNFHSAAHRAL 717 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 + AR + R LL L AG AQ ++ A+++A + + E Sbjct: 718 LAIQQARKINAGQLEVRGLLCLAGAQAGAGDLKKAQLNIVYAVEIAKQLQCFQTVLDEVC 777 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 + + + + T L+Q L I + + E Sbjct: 778 LIERIIPASCEAFTAVNLDQAIGAFSLPRIVEIG-------------------KSAENKA 818 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 + LT+++ VL L+ G SN+QIA + V IK H+R ++ L V +R A A++ Sbjct: 819 DALLTRKQIAVLRLVKEGCSNKQIATNMHVTEDAIKWHMRKIFATLNVVNRTQATIEAER 878 >UniRef50_A3JA10 ATP-dependent transcriptional regulator, MalT related, LuxR family protein n=2 Tax=Bacteria RepID=A3JA10_9ALTE Length = 970 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 181/921 (19%), Positives = 313/921 (33%), Gaps = 77/921 (8%) Query: 11 VRLDHTVVRERLLAKL-SGANNFRLALITSPAGYGKTTLISQWAAGK----NDIGWYSLD 65 L +VR L L L I P GYGK+ +Q I W +L Sbjct: 92 KHLQGLLVRPELNQVLMGSVVPAGLLNIYGPCGYGKSAAATQALLASDFSSAHIRWVTLS 151 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 DN ERF L A+ Q H Q A+ A L P L Sbjct: 152 AQDNAPERFLMLLAVALNQPEPSHSGAFADGLQWLLAATERPDSASLL--------PQVL 203 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 V+D+ I+NP ++ + + P L L+ +SR + +L ++++ +G +L Sbjct: 204 VLDNLDAISNPAALALLQQLVDNLPAQLRLLGISRGPLAISTHSLELQNRFTSLGPDKLE 263 Query: 186 FTHQEAKQFFD-CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 F+ E +FF + + GW T L L R R A Sbjct: 264 FSRSEVFEFFASEVQQQKLTTVSVDNLYSLTEGWPTPLALYRGELRSGRE-------RKA 316 Query: 245 GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN----------- 293 + + + +L D VL + A + L A L +D L + Sbjct: 317 LQDTASVQRFLADAVLGHYTNAQQFALRALAELDVFSDDLFASLADTTTELALSPSQTAL 376 Query: 294 ----------GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEI 343 Q+ + +GL + M G W+ +PL ++L+ A + Sbjct: 377 AQATPIRVTLSQLVPSQAVERGLPAKLMAGRGRWYRLNPLLLDWLQTPALNGSAQRM--- 433 Query: 344 HRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWD 403 +E + + SE + +AL + D +R + + +L + + L ++LP Sbjct: 434 -LRVSEWFAQRRQYSEGLKYALMSADVGQIRRMAAEGSEALLLGQDTASLLRLRRSLPAT 492 Query: 404 SLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG 463 +L NP+L L+ W+ + + L EH K D AL+A +A G Sbjct: 493 ALAANPRLRLVFGWVHAIGGQCRQATDL---VEHLGKVETHDIPLGRIQALQAFIARGQG 549 Query: 464 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 523 + A LA+ ALE+ P ++V V L G + ++ ++ARQ Sbjct: 550 QVEPALVLAEAALED-PELSVQGQLVTQLVRSSALCALGRFADARQASREAARLARQAGD 608 Query: 524 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI-NEQHLEQLPMHEFLVRIRAQLLWA 582 ++ + I ++G L+ + E L A +LW Sbjct: 609 TGSEALAVYAHARIELSKGELRHTEHLLRSSLDTAMQELARPARVGEIRLQLNLALVLWH 668 Query: 583 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 642 R + + + L + + + ++ D A + + R E + + Sbjct: 669 QGRYQDVDRVLAVCTRQAEQTRDLGLLMAMCLRVLICRSQSHFDEAFAWIARAERTMQSW 728 Query: 643 KYHSDW-ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR------NIA 695 + + + ++ W + AA + A Sbjct: 729 QVDGELYVPVLEALKASCWLAQRETDRAAQAMAKILPYRQAGYSPELFPTMPGLMDCLQV 788 Query: 696 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 755 R + GE+ A L L R M LL L + + A + L+ + Sbjct: 789 RIAMARGEYGAARTRLNGLRAGYRDSVPMGVDIHMSLLDVALLAREKSPAQAVKRLVSIV 848 Query: 756 KLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE 815 +LA + FIS F + + LRQ + + Sbjct: 849 ELAAKEHFISPFNELKQELEPLLRQTFDQLPTGVFTDALVKLFGIKAATSATRVIVPLA- 907 Query: 816 NFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLY 875 P+++RE VL I G SN+++A +L ++ T+KTH R + Sbjct: 908 ------------------EPISEREKGVLECIARGLSNQEVADKLHISLHTVKTHARRIN 949 Query: 876 QKLGVAHRQDAVQHAQQLLKM 896 KLGV R A+ A++L + Sbjct: 950 AKLGVKSRTQAIVRARELGVL 970 >UniRef50_B5EC60 Transcriptional activator domain n=1 Tax=Geobacter bemidjiensis Bem RepID=B5EC60_GEOBB Length = 1055 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 169/866 (19%), Positives = 296/866 (34%), Gaps = 31/866 (3%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIGWYSL 64 K++ P V RERL L A + + I+ P G GKTTL+S + WY Sbjct: 5 KITAPGLAAGIVHRERLFQVLDHA-DKPVRWISGPGGSGKTTLVSSYLETRGIPALWYQA 63 Query: 65 DEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLY 124 D+ D+ F Y+ A Q + + + + T A+ +P Sbjct: 64 DQSDSDPATFFYYMGLAFQDSVSPDREPLPLLTPEYLAGLKTFSRRYFQQLFAQLPAPYA 123 Query: 125 LVIDDYHLITNPV-IHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQ 183 +VID+Y I HE + + P+ +T++ SR P + + +G Sbjct: 124 IVIDNYQEIPAGSPFHELIAEGLAQCPDGITVIATSREEPPAVLTVNETAARFAFLGWSD 183 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L F+ EA++F + SS IE + + GW L LI S T + L Sbjct: 184 LRFSFDEAREFAGTQTSSHIETEALASLYAKTDGWIAGLLLILESLDGGTLDQ----KLL 239 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 + + Y D++ + D ++FLLK+A++ + + R+TG + + L + R Sbjct: 240 QELPLDKVFVYFADKIFEARDGELQNFLLKTALVPGITAQMAERLTGIGSSEQILSRLCR 299 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQ-WELAAELPEIHRAAAESWMAQGFPSEAIH 362 F + + YHPLF FL R + AAEL EI R AA +A Sbjct: 300 NRFFTAKSSPADPVYQYHPLFREFLVARAEGTLPAAELREIRRQAASLLKGADRAEDAAG 359 Query: 363 HALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQ 422 A D + +++L+ A L + L+++P +S+ NP L+ + + Sbjct: 360 LLTEASDWDGVAELILDCAPLLAAEGRSETVRGWLESVPAESVAVNPGLLYWKGVCLLL- 418 Query: 423 HRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE-ELPP 481 H A + + + A+ ++ D ++ L E + Sbjct: 419 HSPPASRVCFREAYDLYRLADDRVGMLLSWSGGAEASLYDREFTPLDQWLALLEEMRIEE 478 Query: 482 GWFYSRIV----ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 G SR + A S+ + + ++ + R + L S I Sbjct: 479 GDIPSRQLEEQMAMSIFNAMAFRQPHHRDISKWRERALSLVRGCADINLRLQSAIHLVVH 538 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 G A E+ + ++ + + A A + Sbjct: 539 DLWNGNFGRASVLLEQTLAMA-STGKPSPMTRITIMNAQVLNCYFTGAWASGVAVAFDAL 597 Query: 598 EVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 + +Q + C+L RGD A LN + + L G I + +R Sbjct: 598 RMADETGVHVWDIQLMGNGAGCALCRGDSATADELLNAMRDRLQWGVRLD--IGQYHGLR 655 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA--QILLGEFEPAEIVLEEL 714 + AA L + + I A + G AE L Sbjct: 656 GWQESLARRFQAAIPHLELSLESLQGTGFLAPEAVMLITLADNLRMTGNPTRAEACLSRA 715 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 + AR + LL +L A +L A+ L + G+ + Sbjct: 716 CDIARGMGSGYLEFLCLLNSAELALDAEDDVQGDMLLRRAMALGSAGGY----LNGWCWR 771 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE-RLLNHPEVPELIRT 833 L +L ++E R++R H D + ++L + Sbjct: 772 PDALVRLCTKALENDVEAAYVTRLVRHWALAPETPPQHLDNWPWQFQILTLGGFQLIRGN 831 Query: 834 SPL-----TQREWQVL-GLIYSGYSN 853 PL +++ ++L L+ G SN Sbjct: 832 EPLILAGKSRKPLELLKALVAFGGSN 857 >UniRef50_C8XC62 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XC62_NAKMY Length = 884 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 202/910 (22%), Positives = 346/910 (38%), Gaps = 48/910 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK---ND 58 L+ + P L V R RL L + + L L+++ G+GKT ++ W + + Sbjct: 8 LVTLRTRPPSTLPAGVRRRRLETALDRSFDRVLTLVSAGPGFGKTVTVASWVQLRQIDHC 67 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W +LD + F S ++AA++ ++ A + + L +LA+ Sbjct: 68 FAWLTLDHFADSVHGFWSDVLAAIR-FSDAVPADSPLHEISPASSFGSREVDSLLAQLAD 126 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 P+ LV+DD+HLI NP + ES+ + QP L LV+ +R P L + LRV QL E Sbjct: 127 LRRPVVLVLDDFHLIRNPEVLESIATLLDRQPSKLRLVLTTRADPVLPLHRLRVAGQLTE 186 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I S+ LAFT +E+ F + A + + GW L+L A++ + +A Sbjct: 187 IRSRDLAFTLEESADLFV-LEGFALTAEQLDDLYRRTQGWPAGLRLAAMTLDRADLAASI 245 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + + +++YLV EVLD + A R FLL+++I+ + L R+TG ++GQ L Sbjct: 246 N---RVTGSDRAIAEYLVGEVLDRSEPADREFLLRTSIVDRLCADLADRLTGRDDGQQAL 302 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 + R + +DD +W YHPL LR R E A +PE+ R AA ++ +G P Sbjct: 303 GRLLRSNALVTALDDRDQWVSYHPLLRELLRHRLLLEHRAIVPELQRRAAAWFVERGDPI 362 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 E++ H++ A D L+ + + L +L A Sbjct: 363 ESLRHSIRAQDWDGAGRTLMLCIPKILSVEAPILAAAIRPLADRAVTHPGLFPLLAAAAS 422 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHA----------EFNALRAQVAINDGNPDEA 468 Q Y V+ + A + ++ + L D+ Sbjct: 423 HLQQQDYAAVHQNIVDARQYVDSAPDELRPLITVLLELFEIAYCRLVGDATGLANQCDKV 482 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 RL P + R +AT+ LG +L + ++ + L Sbjct: 483 LRLVDEIPRRDLPLAPHFRAIATANLGAAQLWTDDLGAAELTFADGDRQLNDLGLELTLL 542 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 ++ QS + G + A +A L++ + L +L A + DE Sbjct: 543 NTVSFQSVMEAMTGRCRRAERRARQALALVDRRGWGSETQSFALHLALGMVLNARGQADE 602 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLI-QCSLARGDLDNARSQLNRLENLLGNGKYHS- 646 A + G+ V + + LA+ + ++ R D+ A R L Sbjct: 603 AMRAFGRGLSVSRTQSDRMVRLGLAVGAVEAAVLRSDVAGAMEADARARAGLARTPGTPI 662 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 706 A+ G A + +P Q +ARA + LG Sbjct: 663 RMRCWADVAGAQTLIAAGLPQEA---IERLGEPADDRGFSAVWQRAWLARAHLELGALHR 719 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 E ++ + E R L R LL + + R A A++LA G Sbjct: 720 VEELVRPVIEPGWQYREPVILARLLLAI--AAEKQHRDGLALTHFTAAVELAQPEGIRRP 777 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 F+ +A L + L+ Sbjct: 778 FLQLASRLAGPLHRYQVLDGPNTA-----------------------FVVECIGAAPADA 814 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 + LT+RE VL + + +IA +L V+ T+K H+R++Y+KLGV++R++A Sbjct: 815 HSPAGQVEHLTERELIVLKYLPTMLKAGEIADDLFVSVNTVKAHLRSMYRKLGVSNRREA 874 Query: 887 VQHAQQLLKM 896 V+ A+ + Sbjct: 875 VERARSQGLL 884 >UniRef50_A8S041 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S041_9CLOT Length = 823 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 124/871 (14%), Positives = 259/871 (29%), Gaps = 88/871 (10%) Query: 20 ERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWY---SLDEGDNQQERFAS 76 ERL L + + + +P GYGKTT ++ + + + F Sbjct: 15 ERLQESLRPISRCAMTTVVAPMGYGKTTAVNWYLGERAKAETLKIIRISIYSGNLAIFWK 74 Query: 77 YLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNP 136 + A A L + + Y+ IDD+HL+T+ Sbjct: 75 SVQEAFAHAGFPFLREYPCPTDAAGGG----LLVDDLCHVLAGETSCYIFIDDFHLLTDR 130 Query: 137 VIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFD 196 + P N+ L+V SR+ +R+ ++ +IG++QL H E + Sbjct: 131 RASLFLCMLANRLPINVHLIVASRDRFLPAAETVRLGAKVYQIGTEQLRLNHTEL-AVYA 189 Query: 197 CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLV 256 R + + A+ + GW +A+ L + + + S + Sbjct: 190 HRCGTALSEAQIESLLYSSEGWFSAVYLNLRTLSERG---------VLPSRDSDIYATFT 240 Query: 257 DEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGE 316 ++D + R FL + + VTG + L + Q F+ + D G Sbjct: 241 AAMIDPLPEKQREFLAVMGLADEFTVEMAQCVTGNGDAGQILSVLTEQNAFVTHLPD-GV 299 Query: 317 WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDI 376 + +H + A + AI + + L + Sbjct: 300 TYRFHHMMKECAECCFLAMEAETQRLYWERFGLWYEQHRQYLHAIAAYRKSENYDALLRV 359 Query: 377 LLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAE 436 + + A L + + ++L+ P ++L P +L+ M + + ++ L A Sbjct: 360 IRSDAGILLASLKPEDVLDALEKCPAETLKAYPFAILVLMRRMFTWRQIPKMLELKALLL 419 Query: 437 HEIKDIR------EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA 490 I++ + E + + + + ND Sbjct: 420 TAIEEHPELSEEERGNLLGECDLILSFLCYND---------------------------- 451 Query: 491 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 550 + + S+ + + + + L+ A G L++ Sbjct: 452 -----ISAMSRLHRSASVQMSRPAISIQNSGGWTFGSPSVLM---MFYRAPGELESELAE 503 Query: 551 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 610 ++ + +RA+ L+ R +A + Sbjct: 504 MDECMPHY--YKVTNHHGQGAETIMRAEALFCQGRFTDAHIELERAYAQVKDNGQINMAL 561 Query: 611 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 670 C L D++ + R LL + WI+ N Y + G+ + Sbjct: 562 CCDFLSWRLSLHTDVEQRYTFEERYAALLRYHD--ASWINLWNATSAYYHALRGETDSIP 619 Query: 671 NWLRHTAKPEFANNHFLQGQWRNIA-RAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 729 + + I + + G + EL ++ Sbjct: 620 EIFSQHRLSDINMLAPGKPMMEMIENQVYLAQGAYVRVVGYSAELLPVCEAMHYALVALH 679 Query: 730 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 789 + Y + G+ +A L AL A G + FV + + L + Sbjct: 680 LRIQTAVAYEKLGKSEEAHAWLRKALSDAEPDGLVMPFVENYDILKPLLER--------- 730 Query: 790 LEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYS 849 + + E + LT RE++++ L+ Sbjct: 731 --------------EVKNDLLSKIIELGEAATARNAAGTRPAAFDVLTPREFEIVELMAQ 776 Query: 850 GYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 SN +IA +L ++ ++K ++ +Y KL + Sbjct: 777 RLSNREIAEQLFLSEGSVKQYVNQIYSKLHI 807 >UniRef50_B0TA01 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=3 Tax=Caulobacter sp. K31 RepID=B0TA01_CAUSK Length = 891 Score = 296 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 156/897 (17%), Positives = 302/897 (33%), Gaps = 40/897 (4%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI----GWYSLDE 66 + R RL A + R L+ +P GYGKT ++Q+ A W S+ E Sbjct: 23 SLASRCLSRPRLFAV---DKSIRCHLLRAPQGYGKTVAMAQYWAEHRQAFAATAWVSVKE 79 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 + A + A + + +L L A L+ S + + Sbjct: 80 CRRDLQLLADRICAQISATHEASGQD-RSPPPTESLRNLHDLAAWLWETRDRLGSKVLIC 138 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 IDD + + F+ P + + S +G A ++ R E+ LAF Sbjct: 139 IDDLEF--DLHSIHQIEAFMLATPAEVEFIAASSAD--IGFARMKARRDTHELRHGALAF 194 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 T EAK + AE + GW L+ +A + + A + G+ Sbjct: 195 TLDEAKAVTLAGERQAVSEAEIHSLWKRTEGWPEIFCLLMQAASERRSTDRLIADHITGV 254 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 + L Y +L ++ T F + ++IL S++ V +G ++++ + + Sbjct: 255 DI-DLDKYFRSTILHSLPDDTLSFCVCASILGSVSAEYFNHVFLRNDGAYFIDKLSTERM 313 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALA 366 Q D + + +HPL FL R E P + AA+ E+I+ +L Sbjct: 314 LFQPRDRSQTAYEFHPLLREFLEHRFSVEYGGLKPNLLARAAQWQRQNNNSRESINLSLR 373 Query: 367 AGDALMLRDILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRY 425 AG+ D+ + E+ ++ + + +P + L AW H + Sbjct: 374 AGEHGSAADVASENMMDIALREGEIDQIQFWQGSFSAAVISGSPTIALGLAWAQIFSHDH 433 Query: 426 GEVNTLLARAEHEIKDIREDTMHA----EFNALRAQVAINDGNPDEAERLAKLALEELPP 481 LL + + + + A N E+ R + ++ Sbjct: 434 RRAEGLLVDLRAADLGGLDQQIRRKIECWCDLIAAIGEATRDNLSESRRQCEAWMKIYDE 493 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 S+ + L + + AL + + W ++ Sbjct: 494 ADLVSKGAVLTCLCFIASSEHRFDDLRALFLVASSVNNIAAHRYALGWLHSAMVLAELSR 553 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 G ++ +KA N Q L + ++ + +LD+ E+ ++ + Sbjct: 554 GDMRAGTALIQKARDDNNAQIKLTPFSVNLLNTLALEIQYEANQLDDIESRVDESLDFVR 613 Query: 602 SYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-YHSDWISNANKVRVIY 659 + + G+ A L L + G + + ++ + Sbjct: 614 QHGVVDLTFSAYRTAAAIARRSGNPLRAAELLQELRVIAGESGLFRLEVLARLTLADMFI 673 Query: 660 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 719 + + H+ + Q AR G+F + ++AR Sbjct: 674 AESVEQATSILPSRSHSIFFTTHGPYLRARQSLTEARIAARQGKFHLSNRFANVALDHAR 733 Query: 720 SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLR 779 L L S LL + G+ + +++ + DA+ +A+R G + E + Sbjct: 734 RLGLGSLEVAALLCNAVAFAGTGKLALSEQRVADAIDIASRFGCYRTLLDERWHLEALGS 793 Query: 780 QLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQR 839 L L E+ +R V+ L+ + LT++ Sbjct: 794 ISTPLLNLIPSEEELGRR-----------------PAPVDHLIRSLRSETSV---VLTRK 833 Query: 840 EWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 E +L I G SN IA + ++ T+K HIRNL+ KL V +R A+ ++++ + Sbjct: 834 ELAMLQRIREGLSNRDIAIKHRISEDTVKWHIRNLFAKLKVKNRIQALMESERIGIL 890 >UniRef50_Q46PW4 Regulatory protein, LuxR n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46PW4_RALEJ Length = 911 Score = 294 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 200/909 (22%), Positives = 326/909 (35%), Gaps = 53/909 (5%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW------AAGKNDI 59 KL+ P TV R+ LLA + LAL+ S G+GKTTL+SQW A+ + Sbjct: 38 KLAPPHTQLETVPRDALLADMRAHATCALALLVSAPGFGKTTLLSQWRRCLLQASDGACV 97 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLDE D + RF +Y++ A+++A + +R A L LA Sbjct: 98 AWLSLDEADAEVNRFLAYMLLALEEAGLDIDGLSPLARSQRLDEQPQRTVAALLQALARH 157 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 P+ L++DDYH + E++ + L LVV SRN P +A LR R + E+ Sbjct: 158 GRPVTLILDDYHRAECAAVDEALLTLLERGGRWLRLVVSSRNRPSWPLAALRARGLVHEL 217 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L + EA Q F + +E + + GWA ALQL L + + SA Sbjct: 218 DAASLTLSMAEASQIF----GAALEGPALATLHAKTEGWAVALQLARLWLARGSGSA--F 271 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 S +++YL ++++DN+ R FLL++++L N L G ++ L Sbjct: 272 GLPSFSGRVSEVAEYLAEQIVDNLPADCREFLLETSLLERFNADLADVARGRDDSARMLT 331 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + + L +D WF YH L +F AA EIHRAAA + Sbjct: 332 RLSQFDALLVPLDPGRSWFRYHLLLADF---LRARLPAARAREIHRAAAGWLARNDDLVQ 388 Query: 360 AIHHALAAGDALMLRDILLNH-AWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 A+ HA A D + ++++ W L + E L + P+L L+ A+L Sbjct: 389 AVSHARAGDDTALALRLVVDAGGWELVLRKGIRYTENLLSQFDELATRAEPELTLMHAYL 448 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 + LL A +D V + + E ++ A ++ Sbjct: 449 QAKLGKEALALELLRLAHVAAQDTPALKRDYGAIEAVVHVYFDIFDDYERWPVSGNAAQQ 508 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 P ++ + G + + ++ + + L+ ++ L Sbjct: 509 RIPDDPLAQGIQLCARAVGSLAWGRMDDVMQAVRAARVQMQLIASPLGENYCLMHEALAL 568 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 G + + + A + + + AQ L+ E R G Sbjct: 569 AMTGEMACSRQLLSDALRQAEANFGTDSSLKGIVGCFWAQHLYWQGEWKETPPWIRDGNA 628 Query: 599 VLSSYQPQQQLQCLAMLI--QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 L + + + +L L A S L+ G ++ + R Sbjct: 629 TLERTDGWLDVFASHAEVAWRTALRLEGLQPALSVLDDAART-GRERHLDRLVHLVQAWR 687 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA--------QILLGEFEPAE 708 V G A A R A + + G A + G A+ Sbjct: 688 VDLLSQCGLAAQALQEARAADLESAAAHSPVPGLGWRRLEAVTLALARLALANGASAAAQ 747 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 LE LM R LL +A + A ++ A+ R G + Sbjct: 748 ARLEAAAGVFEPAGLMLPAWRLRLLALVARRKAQDGNVAPALVEAAMAPVVRFGLSGLLL 807 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 G A+ L R + R +F Sbjct: 808 ETGPAILPILPDANSEAGQSLGAAVSQLRGWQAHPVRRRAQF------------------ 849 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 + +E QVL L+ SG SN+ IA L+V+ T+K H++ ++QK GV +R AV Sbjct: 850 --------SAKEMQVLALLASGQSNKAIARGLDVSENTVKFHLKQIFQKFGVDNRAGAVS 901 Query: 889 HAQQLLKMM 897 A Q + Sbjct: 902 QAMQQGLLS 910 >UniRef50_A5V9B6 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V9B6_SPHWW Length = 879 Score = 292 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 166/914 (18%), Positives = 322/914 (35%), Gaps = 59/914 (6%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS----QWAAGKNDIGW 61 + P ++ V R R+ +++ A ++ L+ P G GKT+ ++ AAG + W Sbjct: 2 RYCPPRLIEPLVARPRIARRMAEAA-GKVTLVVGPPGSGKTSALASHHADLAAGGAAVRW 60 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 +L DN S+L A + A + ++ + Sbjct: 61 LTLSAEDNDPAILRSHLDHAFRGAGAEGRDEGDGLSDPPE-------------------- 100 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 + ID I + F+ P + + + +R + + +R + IG Sbjct: 101 NIVGFIDGLEKIDAAPARALIGAFVLELPPSSSFHITARRMKGAMFHDGWLRGVVEVIGP 160 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 +L T EA + RI + V GWA L+ +A + R + Sbjct: 161 DELRMTDDEAAALL----GEAWSPWDRQRINEAVDGWAAGLRFVARAPRSAERLLDGTGE 216 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 R + +++YL D V +D A+ L+ ++L + + G ++++ Sbjct: 217 RPFPV---EMANYLDDVVCARMDAASLAALMDVSVLDRFTPEALAAMPGRPCDWAQIDDH 273 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 R+G F++ +D+ W +HP+FG LRQR + ++R AA + A GF +EAI Sbjct: 274 IREGSFIRYVDEQRCWAAFHPVFGRHLRQRLRRFDPDRFDALNRFAASWFEANGFGAEAI 333 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HA+ D+ ++ N + + + + +P E P L L Q + Sbjct: 334 RHAVTVADSAFAARVIENVGAIHVDLCDGPDV-GLGERVPATRAGELPLLFLGQIYFAIR 392 Query: 422 QHRYGEVNTLLARAEH-------EIKDIREDTMHAEFNALRAQVAINDGNP--DEAERLA 472 + R E L A + +++ + + +D P ++ Sbjct: 393 RGRSVEARAALEEAGRQTRGFTLLDRGADPESIRGFAQLIDMVLDASDDRPITEQRLAEL 452 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + A+E +L + + +++ I Sbjct: 453 ERAMEVHRGVRPILSSGVACMLALAYLELSRYAEAATVCGIGLHAMHDVKDSRVSVFLRI 512 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 Q++I A+ + A E A ++ +RA L + LD A A Sbjct: 513 HQADIAVARDTVDKAVLYIEDAQRIARIGSGVDNYEVIATRILRAGLHYENNELDAALAL 572 Query: 593 ARSGIEVLSSYQPQQQLQC--LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 + L S +L + R +D A +L E L + + Sbjct: 573 LDPSLRQLGSINAWVRLCASGFGTAAAIAGIRHGIDAAEERLRAGEALA-RERNLPRLLQ 631 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ--------GQWRNIARAQILLG 702 R+ G+ AA + L +AR I LG Sbjct: 632 FMAIARLRELTRAGEWRAAMEHVESPGFAGLLATDSLSHAVLGVQVPAMLEVARLMIELG 691 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 A+ L+ +N+ ++ + + R + A + A++LA+ G Sbjct: 692 RPHDAQAWLDRINKPFLGEADSRFRFTFRIMAMRAAYGMRRYNAAVDHMQAAVELASHAG 751 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 + + + + + I+ +H RI ++ R +++ Sbjct: 752 LVRRALNNRQHLTEVFDWSIRNG------RHLPARIGAYVDDVLRGADGTESGATLQQSS 805 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 V + L+ RE +++ L+ GY ++IA L ++ T+KTH + +++KLGVA Sbjct: 806 PRRGVEQAPNNFTLSPRETEIIALVAEGYITKEIAVRLGISEGTVKTHRKKIHEKLGVAS 865 Query: 883 RQDAVQHAQQLLKM 896 R A+ A+ LL + Sbjct: 866 RSQAIARARDLLII 879 >UniRef50_Q0BFD2 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=48 Tax=Burkholderiales RepID=Q0BFD2_BURCM Length = 955 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 183/909 (20%), Positives = 314/909 (34%), Gaps = 43/909 (4%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIGW 61 K + P + R RL + + L+ +PAGYGKT+L++QW + W Sbjct: 76 KTTAPRVPAQLLARARLSLAAPAFDARPVMLVQAPAGYGKTSLLAQWRRESLALGRAVVW 135 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 S DE D+ L VQ G A E+A+ Sbjct: 136 LSADERDDAP----RLLQGLVQAVRTGCARPGFGRLIAGGAARALEGLTAWLAEVAQLSI 191 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 L++DD + + +++ + + + P+NL ++V R +L Q G Sbjct: 192 DALLIVDDAERLPAAGL-DALTYVLHNAPQNLRVIVAGRRGLDRAAGDLLAGGQCTLAGP 250 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 + L FT E R + ++A +R+ + V GW LQL + ++ Sbjct: 251 EWLRFTLDETIALVGARFAQRVDADACARLFERVDGWPLGLQLAMAAMARSADPRQAVDA 310 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 A ++ + D LV+ +L N+ FL +++I ++ +L + + RL + Sbjct: 311 LAARMDGTR--DRLVELLLANLSADDTAFLTRTSIADRLHPSLCAALLDDAEAPDRLARL 368 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 R DD+ +W HPL + LR R AAE +H AA A G EA Sbjct: 369 ARDTPLFIASDDS-DWCRLHPLVRDTLRDRLAAGPAAERSVLHGRAAAWLDAHGMTEEAA 427 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HA AAG + ++ + + L LP L + P L + AW + Sbjct: 428 RHAYAAGQVETAYALAQRCLEDAIKQGRINDVLDWLALLPDAELDKRPTLRIAVAWALAL 487 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 R+ E +A M E + + A D L + + PP Sbjct: 488 GERHVEAQRQIAGI--LADAATPAAMRYECALILSAAAYYADEIDRFVELFEPWADFTPP 545 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 + + + L GE ++ Q + + A W + + Sbjct: 546 AATWLAQMHANRLSARAIIVGEPAQARRYQQAAPRGGTAAGFGYVARWGELITGLSYLCE 605 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 G ++ A + A + P+ L + A + + R+D+A A + ++VL Sbjct: 606 GQIRLADDALSPALARAEADLGRRHPLTCMLAAMCAAIAYEADRVDQAAALLANRLDVLE 665 Query: 602 SYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 P L + +L RG A L + LG + + +V Sbjct: 666 HAGTPDTVLLGYRTSARIALLRGVEHRAIDLL-EALDALGVARRLPRLSVASLAEQVRIH 724 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ---------ILLGEFEPAEIVL 711 +A + A WR + ++ A L Sbjct: 725 AARYREATCHALVERIDAIAAAEFPSHGPLWRRPVVLLQAIAHAGAALAARRWDDACAAL 784 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 +E AR + L + L Q+G A+ L +A+ LA+ G Sbjct: 785 DEAAVLAREMSLGGARIEIMALGAFALEQSGHDGRAR--LDEAMNLADMFGLTRTLADTH 842 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 A+A R++ I + + A V P + Sbjct: 843 PAVADWARRIGD----------------EAIERDAPARSAQPQPRIVPPAPRSTASPRAV 886 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 + LT +E +L L+ SN++IA L V T+K H++NL+ KL + R+ V+ A Sbjct: 887 PSVVLTPKERAILELLARSLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHVVRRAL 946 Query: 892 QLLKMMGYG 900 L + Sbjct: 947 VLGLLESAP 955 >UniRef50_UPI0001C310C8 ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C310C8 Length = 907 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 210/901 (23%), Positives = 345/901 (38%), Gaps = 60/901 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN---DI 59 I +KL+ P V RERL L+ + + L+++PAG GKT L++ W A + Sbjct: 14 IATKLAPPCPPVAPVRRERLFRALAHGSANGVTLVSAPAGAGKTALVASWLASGAVAWPV 73 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W +LD D+++ RF + ++AA+ +A + + R + +F +L LA Sbjct: 74 AWLALDGHDDERRRFWTGVLAALARADPSDAGLAQLAVPPR--GRIDRVFTELVERLAAR 131 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 PL LV+DD H +T+ IH+ + +RH P L LV+++R P LG+ LRV +L EI Sbjct: 132 TRPLVLVLDDVHELTDGAIHDDLAALLRHAPAALRLVLIARADPPLGLERLRVSGRLSEI 191 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + LAF EA++ +P++A ++ + GWA L L AL+ R + + Sbjct: 192 RAADLAFDAAEARE-LLAAWGAPLDAVDARELWRRSGGWAAGLVLPALALRDHADPSAFV 250 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 A G + ++D+++ E+L R FLL++A+ + L + G + LE Sbjct: 251 AGF--GGDDRAVADFVLTEMLAGHPGDVRRFLLRTAVAEELTVELAVELGGRPDAAELLE 308 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + ++R+D + + Y PLF LR EL E+H A G P Sbjct: 309 RLVHGNALVERLDGGRDGYRYGPLFAGLLRSELARTAPEELAELHLLLARWHERDGVPGA 368 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ HALAA + + + + L EL LL E + +P P++ L A Sbjct: 369 AVRHALAASAWELAAEAVADGWLRLLLDGELELLREVAERMPPALHRRWPEVALACAAAA 428 Query: 420 QSQHRYGEVNTLLAR--------------AEHEIKDIREDTMHAEFNALRAQVAINDGNP 465 + TLLAR A + + A L +V + Sbjct: 429 TAAGDAAGAATLLARAEDAAEDASGEAAGALPPARALGFARGQAVVELLLGRVCGDVERT 488 Query: 466 DEAERLAKLALEELPPGWFYS------RIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 519 A + +P G + R+ A + LG GEL + + AR Sbjct: 489 TRAAAVLTAGRRAVPSGDGDAALADELRVAALAHLGATEAWCGELEAAAQRLDAALAGAR 548 Query: 520 QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 579 + ++ L + + +G L A + A +L + P + A Sbjct: 549 ERELDAIVLLARAHLALGEALRGRLVRAADGAAAALELAERHGWDATPAAATAQAVLASA 608 Query: 580 LWAWARLDEAEASARSGIEVLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 638 L W R +EA+ + S +P + + I A G D A ++L E Sbjct: 609 LLHWDRTEEADRVLARAERTVRSSGEPPLRALVALVRIGLLAADGAWDAAIARLRAAEAE 668 Query: 639 LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 698 L + H+ + + G++A A L H + R + Sbjct: 669 LRSWPLHAPLRARFAAHEALLRAARGERAEAGALLESARAAGPRPEH-----AAALGRLR 723 Query: 699 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 758 + GE A +E + + A L AL LA Sbjct: 724 LAAGEPASASAAVEP---WLEQTVPRAVAVELWTTEAVARDALDDDAGACCALERALALA 780 Query: 759 NRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFV 818 GF + G ++ L + I+ T L Sbjct: 781 EPDGFRHELLALGPSLRDLLARTIRAGTAHRSFAGELLDALE------------------ 822 Query: 819 ERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKL 878 H L PL+ RE VL + + SN +IA EL V+ T+KTH++++Y+KL Sbjct: 823 -----HDGARPLALPEPLSGREEAVLRCLPTMMSNREIATELYVSVNTVKTHLKHIYRKL 877 Query: 879 G 879 Sbjct: 878 D 878 >UniRef50_C9ZHK9 Putative transcriptional regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZHK9_STRSW Length = 913 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 193/913 (21%), Positives = 324/913 (35%), Gaps = 62/913 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK-NDIGW 61 + ++ + P R + R RL+ +L A L ++ AG GKT L++ WAA + + W Sbjct: 44 LRTRFAVPARPGTFLRRARLVDRLDRALTTPLTVVNGAAGAGKTLLVADWAARQEPPVAW 103 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 + + GD F +Y++ ++ A G E + +L +L EL Sbjct: 104 LTTEAGDQGPGMFWAYVLQTLRSA--GVPLSPEIGCPADAGRADRTLLTRLAAELGARER 161 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P+ LV+D++ + +P I + + F + H + LV+++R P L + R L EI + Sbjct: 162 PVILVLDEFDRVADPEIADQLEFVLHHAAGGVRLVLVTRTEPLLPLHRHRTAGDLTEIRN 221 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 +LAFT +EA + + + + GWA L+L AL+AR+N R Sbjct: 222 AELAFTPEEASVLLGLH-GLRLPVPVAEALVERTRGWAAGLRLCALAARENPDPEMYLKR 280 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 + + ++D+L+ EVL+ T+ LL+ ++L + L +T + L E+ Sbjct: 281 F--EVERTAVADFLLAEVLERQPPETQDLLLRVSVLERIRPELADALTERGDAAGILAEL 338 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 R F++ D W+ HPLFG LR + L P +HR AA+ G EA+ Sbjct: 339 HRGNAFVE--DLGHTWYRLHPLFGEILRAHLRMRLPGLEPVLHRRAADWLRRSGLLDEAL 396 Query: 362 HHALAAGDALMLRDILLN--HAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 H AAGD L++ LF L + + +P L++A Sbjct: 397 GHGAAAGDWDFTAGALVDDLALGQLFTGLRSDDLTALFSRMGPE--ARSPAAHLVRAARE 454 Query: 420 QSQHRYGEVNTLLARAEHEIKDIRED--------TMHAEFNALRAQVAINDGNPDE---- 467 S+ + L AE ++ + + L A A G+P Sbjct: 455 LSRCELDRGLSHLRHAERDLAEDEDRAEDEPGPAAARLSCLLLEALAARLTGSPGRAELV 514 Query: 468 ---AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 524 AERL + L + + LG G + A + + + Sbjct: 515 AGTAERLREQVPAHLLDAHPELTALLLTHLGSTRLWAGRFEEARAALSLVTEGSGDASTA 574 Query: 525 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 584 L + I + G+ A A L L Q + A + Sbjct: 575 LAREDCLGLLALIDYLNGWPGRAERRANAALTLSERYSLPQPSAFGIAHLVLAAVAVDRD 634 Query: 585 RLDEAEASARS-GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK 643 L A A + + P + + LARGD A + Sbjct: 635 ELRLARAHLDAVADDRSPLRDPVTEAGRAIATGRLLLARGDTRGALAATEPAVTADVASP 694 Query: 644 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 703 + + G AA L ARA++ G Sbjct: 695 WARGHTALVASA---AHLARGRPEEAAALL-------HDVPGHQPVCAVGEARARLAAGT 744 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 A VL+ + A + + R LL+ + G + +R++ AL A R Sbjct: 745 PRAALDVLDAV--PAETRTGPAVTVRALLVRAEAAHAVGDTAAVRRLVAQALHEARRERL 802 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 F G + L Sbjct: 803 RRPFAEAGGWLRPVLDTAPLRGLAAG----------------------WLTPGPAPHTGT 840 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 L+ RE VL + S E+IA +L V+ T+KTH++++++KL V R Sbjct: 841 PGPEDRPPVVEDLSGRERDVLRGLDRMMSTEEIAADLCVSVNTVKTHLKSVFRKLAVNRR 900 Query: 884 QDAVQHAQQLLKM 896 DAV+ A++L + Sbjct: 901 NDAVRRARELHLL 913 >UniRef50_A1AUN2 Transcriptional activator domain n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AUN2_PELPD Length = 1061 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 157/805 (19%), Positives = 286/805 (35%), Gaps = 22/805 (2%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYSL 64 K++RP L V RERL L GA ++ + P G GK++L++ + + WY + Sbjct: 7 KINRP-LLTDIVPRERLFRLLDGALKRQVVWVHGPGGSGKSSLVASYIDSRALPCLWYQV 65 Query: 65 DEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL-AEWHSPL 123 D GD YL A++ A A + Q+ L + F L A S Sbjct: 66 DRGDQDVATLFYYLGMALENAGFSTEAPSLPLLTPGQHPELELFAKRYFERLFAALPSSC 125 Query: 124 YLVIDDYHLITNPVI-HESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 LV DD H + + + H +R + P+ + +VV+SRN + +LR R L I Sbjct: 126 VLVFDDCHEVADDSLFHRILRNGLYEIPDGIHVVVISRNAVPSSLIHLRSRSMLNTISWS 185 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 L T E + R + ++ ++ R+ + + GW L L+ A+ S Sbjct: 186 ALRLTPAETEAIIRARRADHVDREDARRLHERIQGWVAGLVLVLE-----GGYANISDAV 240 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 + DY E+ +D AT+ FLLK+A+ + R+T + + L + Sbjct: 241 PEMQPVQEVFDYFAAELFAGMDEATQIFLLKTAVFSEVAPFPAQRLTQQHDAGRILSWLY 300 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQRC-QWELAAELPEIHRAAAESWMAQGFPSEAI 361 + F +R + G + YHPLF FL +R Q+ E+ I AA + EA Sbjct: 301 EKNCFTERRYEGGSMYRYHPLFREFLLERACQFFSPDEMRGIRHTAAIALEESERQEEAT 360 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 +AA +++ A + +++ L+ LP + +P L Q Sbjct: 361 ELFMAAASWQDAARLIIRIAPAYLAQGRGKTVQQWLERLPEELAQRHPYLPFWQGACRLP 420 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAE-FNALRAQVAINDGNPDEAERLAKLALE--E 478 + T RA + + + A +D E + + Sbjct: 421 EAPLS-AFTDFKRAYQIFQQHDDRVGMCLSWAAGANATLYSDSIYHEWIPEMESYMRQYH 479 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA--RQHDVWHYALWSLIQQSE 536 + P V TS+ + + + R L +Q+ L + + + Sbjct: 480 VFPSPEIEARVITSMFNAMSFQQPDHLRIRELEEQSYGHFWQEHCLDSDARLKTGVYLAV 539 Query: 537 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 596 G +Q A ++ LI++ + +A + + A Sbjct: 540 FNLWCGEIQRASLIADR-LDLISQAASVSDLTSFTIKTTQALVDFFTASFGACRQRVFEA 598 Query: 597 IEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 +++ + L + + +L+ GDLD + L R+ + L + Sbjct: 599 LQLAEETGIRALYLHVMGHGLAAALSDGDLDTVDTLLARMRDNLDRAGELDQ--AYYYFC 656 Query: 656 RVIYWQMTGDKAAAANWLRHTAK--PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 ++ GD A + L T+ N +A G+ + A+ + Sbjct: 657 LAWRARLEGDLEGAFHNLAITSPFMESVDNLPSHAIAHIALAELYCRRGDGKAAQGHVAL 716 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 + LR LLL L + GR + L AL L G ++ + + + Sbjct: 717 ARQFGERLRSHVVEFMCLLLEADLNLEQGRAGEGIACLRAALALGRSHGIVNMYWWQPDT 776 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRI 798 M + + ++ +R Sbjct: 777 MVRLCMRALREGIEAGYVSALIRRR 801 Score = 51.4 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 59/426 (13%), Positives = 119/426 (27%), Gaps = 42/426 (9%) Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL 474 QA + +G + A ++ ++ A++DG+ D + L Sbjct: 578 QALVDFFTASFGACRQRVFEALQLAEETGIRALYLHVMGHGLAAALSDGDLDTVDTLLAR 637 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 + L + L +G+L + + T D + I Sbjct: 638 MRDNLDRAGELDQAYYYFCLAWRARLEGDLEGAFHNLAITSPFMESVDNLPSHAIAHIAL 697 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 +E+ +G + A A Q L + + + A L R E A R Sbjct: 698 AELYCRRGDGKAAQGHVALARQFGER--LRSHVVEFMCLLLEADLNLEQGRAGEGIACLR 755 Query: 595 SGIEVLSSYQP----QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW-- 648 + + + S+ Q + L +L G S L R L+ Sbjct: 756 AALALGRSHGIVNMYWWQPDTMVRLCMRALREGIEAGYVSALIRRRGLVPRTPPLDMEEW 815 Query: 649 -----ISNANKVRVIY---------------------WQMTGDKAAAANWLRHTAKPEFA 682 + + + K + + PE Sbjct: 816 PWPVKVYTLGRFELHANGNPVLFSGKVQKKPLEMLKVLLALEGKESHEGQIADLLWPEAE 875 Query: 683 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 742 + + + R + LLG + + L + + LL ++ A Sbjct: 876 GDTARKSLKSTLHRLRDLLGNEKAVLMREGRLILDRYQVWTDVLAFEELLAKARVKKDAA 935 Query: 743 RKSDAQRVLLDALKLANRTGFISHFVIEG---EAMAQQLRQLIQLNTLPELEQHRAQRIL 799 +++A R+ AL L + HF+ + + +L L Q R Sbjct: 936 DEAEAIRLTEKALAL-----YRGHFLDQVSDTPCIIALRNRLQGRFRNAILAQGNLWRDR 990 Query: 800 REINQH 805 ++++ Sbjct: 991 GDLDRA 996 >UniRef50_Q4KI37 Transcriptional regulator, LuxR family n=3 Tax=Pseudomonas fluorescens RepID=Q4KI37_PSEF5 Length = 848 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 187/906 (20%), Positives = 312/906 (34%), Gaps = 85/906 (9%) Query: 9 RPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN---DIGWYSLD 65 P H R RL A L + R+ L+ +PAG GKT L+++ + W L Sbjct: 11 MPRLSSHHFSRSRLSAPLLASG-ARVKLLCAPAGSGKTALLAECLQQAPETCRVSWLPLS 69 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 G + + + L A+ + A + LA +P ++ Sbjct: 70 GGRHSPQGLCAALAQALGLERDDE--------------------ATVLQHLAHLQAPAWI 109 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 IDDY + + + + LT + R P L + DQL E+ LA Sbjct: 110 FIDDYCRVAAADLDLLLDRLLSLDNPQLTWWLGCRRRPLCNWPRLLLDDQLFELDGPALA 169 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAG 245 F+ E +Q RL P+ A +SRI GW +++ L + + + Sbjct: 170 FSQIEIEQLL-QRLPQPLCAQTASRILQRSGGWCAGVRIALL------EGSELTIQPCKP 222 Query: 246 INASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQG 305 + L +YL E+ + A L N L + G G L ++ Sbjct: 223 GRPNTLLEYLEHELFSVLPAELAQVWQVLAHLPRFNAELCEHLFGVGEGAQYLRTLQDMA 282 Query: 306 LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHAL 365 F++ D G+W P +R HR A + ++AQ A AL Sbjct: 283 CFIEPWDGGGDWLQVFPPLARLMRDEAWPGG----RSWHRRACQWFIAQEDWQSAFEQAL 338 Query: 366 AAGDALMLRDILLNHAWSLFNHSELSLLE-ESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 A + + +L + ++ + +LL + + + LL +P LV L M R Sbjct: 339 RAEEYEVAVSLLEHFSFEFLFQQDNALLLLQLHERHGGELLLVSPHLVGLLVAAMLFAGR 398 Query: 425 YGEVNTLLA---RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 + + +A R + ++ + A + A + + G A + AL+EL Sbjct: 399 FEQAGQCMAQMARFAPQPSAAQQRQLLARWQAQQGWLLHLSGRMAAARQHFIEALDELAD 458 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 + +R++ S L + EL + AL ++ +AR D + + +++L + Sbjct: 459 SAWTTRLLCLSGLTQQALLGAELDVAQALNREALCLARAQDAQLFEGLLELDHAQLLEQR 518 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 G A E+ + ++ Q L P+ + +L ++A RSG+E Sbjct: 519 GAPHRAQSLLEQVCERLSMQALRATPLLGRIALRLGRLALRQGHAEQAAGYFRSGLEDCL 578 Query: 602 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS-DWISNANKVRVIYW 660 ++ L Q + +GD A +L E L+ + + +V W Sbjct: 579 LSHDKRALYGFLGQAQLAANQGDYAQAFVRLRDAERLMQQRQIPDTVYRGVLLQVSSQLW 638 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFLQGQW---------RNIARAQILLGEFEPAEIVL 711 G A L + + A++ LG + L Sbjct: 639 LQQGRPELAQEALSRLLRHFRGPQALQAPPATLELIPGIEYLLVLAEVHLGRAQAPIATL 698 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 + L A+ + L L ++ G + AQ L L R Sbjct: 699 QGLLARAQRHGMQGLEAEVQLALAEVAHLQGNPALAQEALQAGQALVQRCNLPQALHELR 758 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 L L T P Sbjct: 759 LRQPLLLAAGEALQT------------------------------------PSSAGPLEN 782 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 R S L+ RE QVL LI G SN+QIA +L ++ T+KTH R ++ KLGV R AV AQ Sbjct: 783 RESLLSLRELQVLQLIAQGCSNQQIAEQLFISLHTVKTHGRRIHSKLGVERRTQAVAKAQ 842 Query: 892 QLLKMM 897 L M Sbjct: 843 ALGLMS 848 >UniRef50_Q3A891 ATP-dependent transcriptional regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A891_PELCD Length = 977 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 154/867 (17%), Positives = 278/867 (32%), Gaps = 27/867 (3%) Query: 6 KLSRPVR-LDHTVVRERLLAKLSGANNFRL--ALITSPAGYGKTTLISQWAAG-KNDIGW 61 K P + R+RL+ +L R+ L+ + AG GKTT+I Q+ K W Sbjct: 15 KFYPPQVDTPRFLCRDRLVDRLLREGGARIPDILLEAQAGQGKTTVIKQFLDRSKTAFVW 74 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSL---FAQLFIELAE 118 Y + D F + + + + +L L L +L Sbjct: 75 YQVGAEDADPGFFLTAIATCIYARFPECPSAKTAQILSCSDFALFDLQKRVDLLLNDLCA 134 Query: 119 -WHSPLYLVIDDYHLITNPV-IHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR-VRDQ 175 LY+V DD H + + + L ++ SR L A L Q Sbjct: 135 CLTDDLYMVFDDLHYLLDHEFSLALLSHLFETASPRLHFILSSRECLPLNDALLSDGNRQ 194 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 L +G++ LAF E FF + + + GW + L+ L Q + Sbjct: 195 WLRLGNRDLAFDETEITDFFYRIHHLDVPSDTIRTVARTTDGWVMGISLLGLQLAQQEGA 254 Query: 236 AHKSARR-LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 A A G + DY E+ + LL ++L + AL +TGE Sbjct: 255 AGFPALVNCRGEGTRAILDYFRREIFAPLPQRLHRPLLVLSLLEEIPVALAVELTGEVEI 314 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQ-WELAAELPEIHRAAAESWMA 353 + E+ R +FL+ +D F H LF FLR+R + I++ A + + Sbjct: 315 GVDFCELARSNVFLRPLDPDRTEFGLHHLFQQFLRERATVALSPQAIRRIYQRAGQFCLK 374 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 + ++A+ + L AGD + L ++ ++ + L L+ +P L Sbjct: 375 REDIAQALRYLLQAGDYAAVESALQDYGMDFLATNQTATLAAILQQIPQADLSGQGWSCF 434 Query: 414 LQAWLMQSQHRYGEVNTLLARAE----HEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 A LL +A D+ E A ++ + +E Sbjct: 435 YLALAYMDSA-PSLALPLLKQALVIFIARQNDLGELLGLAHMISIHITTTGHYREGEEML 493 Query: 470 RLAKLALEELPPG-WFYSRIVATSVLGEVL-HCKGELTRSLALMQQTEQMARQHDVWHYA 527 A+ + G I+ L ++ + +ARQ + ++ Sbjct: 494 FRAEQLFARVGGGLDVAMTILVARSLAMGYCIFLADVDEATRFASLALSLARQEQLANFE 553 Query: 528 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 L+ I G A E+A + + + L+ Sbjct: 554 AAMLMVMGYIHIFAGHTVLARMYMEQAAPCVQRAEVGAFNSLSI-RMMLFNFLYIEGDFA 612 Query: 588 EAEASARSGIEVLSSYQPQQQLQ---CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 644 +EVL + Q + C + ++ +G +A + N+ L Sbjct: 613 NYFEQKNQLVEVLGNAMFSQSIAAPFCTIWEMDIAINQGRFTDALALANQA--LGQQPPL 670 Query: 645 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF--ANNHFLQGQWRNIARAQILLG 702 S +++ + + A + + +F+ + + G Sbjct: 671 SPHLRSQVLQLQSVVLGLLDQPDRAWRAAEQSQQLRELSGGRYFVTLNQLMVGLSCFHCG 730 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 PA L + E AR + LL +Y G ++ A + + L L R Sbjct: 731 RPVPALQRLSDGIEAARQMPTEYLQACGLLHRAAVYLALGEQTLAGQDIAQGLGLMRRNA 790 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 + + AM + L + + + A L A D + L Sbjct: 791 YRHFWGWAPAAMQKILSFAVAHRIETDYARELAAERLGIALSEDGSAIALLDIRTLGGLH 850 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYS 849 E L+ LT + ++L L+ S Sbjct: 851 ILLEGKPLLAAEALTPLQRELLCLLVS 877 >UniRef50_B5HWH8 LuxR-family transcriptional regulator n=9 Tax=Streptomyces RepID=B5HWH8_9ACTO Length = 894 Score = 282 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 185/907 (20%), Positives = 328/907 (36%), Gaps = 54/907 (5%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK-NDIGW 61 + ++ + P R + R RL L+ L ++ AG GKT L++ W A + W Sbjct: 29 LRTRFAVPSRPATFLPRRRLTQHLAEGLRTPLTMVNGSAGAGKTLLVADWTASLDRPVAW 88 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 +++ + F +Y + A+ + A + + + +++ +L Sbjct: 89 LTVEAEKQRPGTFWAYFLQALSASGTELSDRVHCPADPNRIS--RKVLSEIAEDLVGRDP 146 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 +V+D++ ++ + E + F ++H L L++++RN P L + R L EI Sbjct: 147 APIVVLDEFDRVSASEVAEQLEFVLQHAGSGLRLILVTRNEPMLSLHRYRAAGTLTEIRD 206 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 +LA +EA + + A + + GWA L+L AL+A+++ Sbjct: 207 AELALNPEEAAALLELH-GLSLPADAVRSLVERTRGWAAGLRLCALAAQESPDPERYLKE 265 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 A S ++D+L+ EVL AT+ LL+ ++L L+ R+T + + L E+ Sbjct: 266 FEADH--STVADFLLAEVLRRQPPATQDLLLRVSVLDRFCPDLVNRLTHRTDAALILAEL 323 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 R F++++ W+ HPLFG L+ + P++HR+AA+ +G EA+ Sbjct: 324 HRDNAFVEQLGQG--WYRLHPLFGEILQTHLRVRHPGLEPDLHRSAAQWMRRRGALPEAL 381 Query: 362 HHALAAGDALMLRDILLN--HAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 H AA D +++ F L E + + P L++A Sbjct: 382 AHGAAADDWGFTAAAVVDDLAIGQFFTDLRSDDLNELFSRMGPE--ATGPATELVRAARD 439 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAE--FNALRAQVAINDGNPDEAERLAKLALE 477 + L E + ED A+ + L A A G+P AE+ A+ A E Sbjct: 440 LAHSDLDRGVAHLHHVETWLSAAPEDPAAAQLSWAFLEAVAARLAGSPARAEQAAEAADE 499 Query: 478 ELPPGWFYSR-------IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 P + + + LG G + A + + S Sbjct: 500 VRPEVPPHLLDKHPELSALLLTHLGSTRLWAGHYEDARAALSEAADCPGGILTVLPREES 559 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 + + + + G+ A A L Q + A + L A+ Sbjct: 560 MGHLALLDYLDGWPGRAEHQALAAMTETERFSLPQPSGSGIERLVLAAVAVDRHELGRAQ 619 Query: 591 ASARSGIEVLSSYQPQQQLQCLAML-IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 A E+ Q + A+ + LARG+ A + Sbjct: 620 ALLDEAAELDLDTQDPVKAAGRAIATARLHLARGNARAAMESATPALTTTVTSPWADSLE 679 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI 709 G AA LRH + A AR Q+ G A Sbjct: 680 RLVTSA---VHLAEGRAETAAEVLRHLPDDQPA-------WTVEAARIQLAAGRPGAAID 729 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 +L+ + +A + R L+ Q AG A+R + AL LA R F+ Sbjct: 730 LLDSV--SAERRPGPAVTVRAALVRAQAAQMAGDTETARRFVAQALLLARRERLRRPFLD 787 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPE 829 G + L + ++ P Sbjct: 788 AGRWIRPLLA--------------------TAPLRSLAAEWLVPGPVTGNGPGAAGPRPA 827 Query: 830 LIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 I L++RE VL + S E+IA +L ++ T+KTH+++LY+KL V R +AV Sbjct: 828 PIVVQELSERERDVLQRLAQMMSTEEIAVDLYLSVNTVKTHLKSLYRKLAVNRRSEAVHR 887 Query: 890 AQQLLKM 896 A+ + + Sbjct: 888 ARDMRLL 894 >UniRef50_C0ZBC0 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZBC0_BREBN Length = 1068 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 143/854 (16%), Positives = 316/854 (37%), Gaps = 36/854 (4%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG-WYS 63 SK++ P + + + R L KL ++ LI + AGYGKTT ++ + + W++ Sbjct: 9 SKITPPGQKPYVLRRPALAKKLRLLKYTQICLIHAGAGYGKTTSLATFLHDEALAASWFT 68 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMA------QKRQYASLTSLFAQLFIELA 117 + +GD+ F L+ +V+Q +G + + L E Sbjct: 69 IQDGDDALLAFVLCLVESVRQVHSGFGQVLKEQLKDITEQSPVPSLDSKVLVDWFVGECV 128 Query: 118 EWHSPLYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLG-IANLRVRDQ 175 + + LV+D + I N + + ++ P+ + LV+L+R+ P+ + L R + Sbjct: 129 QLQADHILVLDHFQRIENGCEVDQFVQRLAEALPQKVKLVILTRSRPKWSNLDLLSARGE 188 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 LE+ + L+FT +E++ F+ + + + R+ + GW AL+ + Sbjct: 189 CLELTTNDLSFTLEESEAFYSDQYDITLSEEDWGRVEEVALGWVMALRTFGEMVTRGQTV 248 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + S L L EV +D + FL+++A+L + ++ GE + Sbjct: 249 PD------SLRELSRLLHLLEVEVWTQLDAGMQRFLMEAAVLEQFDLEDCKQILGEGCIE 302 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 L E +R LFL D+ + +HPLF L + A + +++ AA + +G Sbjct: 303 HLL-EAQRCHLFLHVQADSH--YSFHPLFQRLLSSKLAANQATYVH-VNQKAAGWYRRKG 358 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 ++A ML + L + L +L L E + LP E L+ Q Sbjct: 359 DEAKAFRRLRLVEQWEMLGEWLCQASERLLQAGKLDFLYEWITLLPEHIKCEQHWLLFYQ 418 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 + + + Y + + + + ++ +A+V ++ AE L K A Sbjct: 419 GEVERYRCLYAKSFASYEQFLKQCEQKQDQIGLCRGLEGQARVHLDSVQGVRAEELLKRA 478 Query: 476 LEELPPGWFYSRIV--ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 ++ LPP + + +L E+ +G+ ++ A ++++++ +Q + + Sbjct: 479 IQLLPPFEQENEMAPRLYRLLAEIYTNRGDAKQAAAWYERSQELEQQTE--------VEL 530 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 +S +LF G LQ++ + E +Q+ +H + + + + + +A Sbjct: 531 ESRLLFRTGRLQSSIQLLESKWQVEQGKHPPLTRSYRETSLLLSFVYALNGEWERGWEAA 590 Query: 594 RSGIEVLS-SYQPQQQLQCLAMLIQCSLARGDL--DNARSQLNRLENLLGNGKYHSDWIS 650 + I++ ++ P + +L L D R + ++ + Sbjct: 591 ETAIQLGRAAHSPFVEANGYVRKAHAALISQTLPTDEIRELYEKGLQIMEELQSTRGKSE 650 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHT--AKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 + + Y + A + ++ I A G+ E A Sbjct: 651 TLLGLTLFYAREK-ALDQALLYGNRGIQETEAMRDDWLGSLVRMAIGIAYAKYGKEEEAW 709 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 + + + ++ L L+ L ++ + + AL L + + Sbjct: 710 AIFIDCADRLSHCGDSYNVVICQLWLSFLAYRKKQWDLFVPAVTQALSLMKSGEY-QFLL 768 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 + Q + + + + + ++ + F + R+ Sbjct: 769 QRPTLLTPHDVQQLMPILIEAERRKVSPDYVSQLLNDLGLQNVTFHPGYTLRIQTLGAFR 828 Query: 829 ELIRTSPLTQREWQ 842 + L+++ WQ Sbjct: 829 VWLGERELSEKAWQ 842 >UniRef50_A9WAL3 Transcriptional activator domain n=3 Tax=Chloroflexus RepID=A9WAL3_CHLAA Length = 1170 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 186/857 (21%), Positives = 319/857 (37%), Gaps = 23/857 (2%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG 60 +L+ +K++ P + +VR + A+L A ++R+ L+ + AGYGKTT +++ A + Sbjct: 84 VLLQAKVAPPRPHRYRLVRPAVTARLREAFDYRVTLVQAGAGYGKTTALAELAMSSATVC 143 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATN--GHCAICETMAQKRQYASLTSLFAQLFIELAE 118 WY++ E D F +YL AA A+ + A T L LA Sbjct: 144 WYTIGENDRDPVSFLTYLAAACAPVLPQGAPEALATLRSHPADRAVWTQTVDGLLNALAG 203 Query: 119 W-HSPLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNL-PQLGIANLRVRDQ 175 P+ L++DDYH + I I + P L+L++ +R + R R + Sbjct: 204 SPRRPVLLILDDYHFVAASAEIRALTERLITYAPPWLSLLIATRYPIVSGELVRWRARGE 263 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 +LE+ LAFTH E F + A+ + GW ALQL+ R Sbjct: 264 VLELHRDALAFTHDEIAALFRDVFGMALSDADVDLLDHHTEGWPIALQLVWQGLRSGQAR 323 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 + + + L D+L +VLD FL +A LR + A V ++ Sbjct: 324 SVSELLASGPASLAALFDFLASDVLDRQPPEIASFLRATAPLRVLTAAACDAVRQADDSD 383 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 L ++ + LF+ +D + + YH LF +FLRQ+ + + +L E HR AA + A G Sbjct: 384 QLLAQVRDRDLFVVELDASH--YRYHHLFHDFLRQQTRSDP--DLAERHRRAARHYAAAG 439 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 EAI+H AAG+ + D ++ + L L + + ALP + + P+L Sbjct: 440 QAEEAIYHWFAAGEVAIAADAIVAAGEDALRNGRLDTLTDWIDALPAELIASRPRLQSYL 499 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 L + + R+ E A+AE + + A +A V I+ P +AE + + A Sbjct: 500 GDLYRLRARFDEARNWYAQAETISRQHGDRAELARALYGQALVYIDQVQPVQAESVLQEA 559 Query: 476 LEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 L +R +L E G+ + AL QQ Q+ + + Sbjct: 560 LRVSEGLEDQVARARVLELLAENKLNMGQPDEAEALQQQARQLRAASPAADLLSARVKLR 619 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 + L A L AW +E+ + H V + A + +D+A + A Sbjct: 620 TGQLAAARTLLQAWRDRERVATARGATPAPRG--HREAVLVLALIAAFEGDVDQALSLAE 677 Query: 595 SGIEVL-SSYQPQQQLQCLAMLIQCSLARGDL------DNARSQLNRLENLLGNGKYHSD 647 G++V + A L L + L D A + G Sbjct: 678 EGVQVGTERHSRFITSVAYARLGHAWLLKSALTGVSARDRALEYYRQALAE-GQAIGVDR 736 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA--QILLGEFE 705 + + GD AAA N G + R +L G+F+ Sbjct: 737 LRVEPLWGLTRLYGLAGDLAAAENAAVDGQAFCRWAGDLWLGAMIQLQRGVSHLLGGQFD 796 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A+ +L + R+ L L Y++ + A + +AL L+ G+ Sbjct: 797 RAQEILLAARADLRACSDRFGQAVATLWLALGYYEQRHDAAATAAIDEALDLSATAGYDY 856 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 F + + + L + + + + + + R+ Sbjct: 857 LFTR-PTFLGLPDPRRVIPLLLATRARGHHRDYIERLLSAMGLRGLEAHPGYQLRVQTLG 915 Query: 826 EVPELIRTSPLTQREWQ 842 + REWQ Sbjct: 916 MFRVWRGDHEIEAREWQ 932 Score = 63.8 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 59/441 (13%), Positives = 115/441 (26%), Gaps = 36/441 (8%) Query: 368 GDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGE 427 D + +L A + N + E+L+ +P LL A + + Sbjct: 567 EDQVARARVLELLAENKLNMGQPDEA-EALQQQARQLRAASPAADLLSARVKLRTGQLAA 625 Query: 428 VNTLL------ARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 TLL R H E + A +A +G+ D+A LA+ ++ Sbjct: 626 ARTLLQAWRDRERVATARGATPAPRGHREAVLVLALIAAFEGDVDQALSLAEEGVQVGTE 685 Query: 482 GW-------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 534 Y+R+ +L L R+L +Q + V + L Sbjct: 686 RHSRFITSVAYARLGHAWLLKSALTGVSARDRALEYYRQALAEGQAIGVDRLRVEPLWGL 745 Query: 535 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 594 + + G L A L + + R + D A+ Sbjct: 746 TRLYGLAGDLAAAENAAVDGQAFCRWAG--DLWLGAMIQLQRGVSHLLGGQFDRAQEILL 803 Query: 595 SGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 + L + + Q L + A + ++ +L Y + Sbjct: 804 AARADLRACSDRFGQAVATLWLALGYYEQRHDAAATAAIDEALDLSATAGYDYLFTRPTF 863 Query: 654 K----------VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 703 + + + L + Q + + + ++ G+ Sbjct: 864 LGLPDPRRVIPLLLATRARGHHRDYIERLLSAMGLRGLEAHPGYQLRVQTLGMFRVWRGD 923 Query: 704 F---------EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 754 + A + + L + +L L A L A Sbjct: 924 HEIEAREWQRDKARQLFQALIVHRNRWLQRDELAELLWPQLNPEAAVRDFKVALSALYRA 983 Query: 755 LKLANRTGFISHFVIEGEAMA 775 L+ + EG A Sbjct: 984 LEPNRTEATSAFIAREGSAYR 1004 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 62/529 (11%), Positives = 121/529 (22%), Gaps = 28/529 (5%) Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 LE + L + + D+ +L AAA + + Sbjct: 573 ARVLELLAENKLNMGQPDEAEALQQQARQLRAASPAADLLSARVKLRTGQLAAARTLLQA 632 Query: 355 GFPSEAIHHALAAGDALML-RDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 E + A A A R+ +L A ++ + + + + Sbjct: 633 WRDRERVATARGATPAPRGHREAVLVLALIAAFEGDVDQALSLAEEGVQVGTERHSRFIT 692 Query: 414 LQAWLMQSQHRY-----------GEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAIND 462 A+ +A E + I D + E ++ Sbjct: 693 SVAYARLGHAWLLKSALTGVSARDRALEYYRQALAEGQAIGVDRLRVEPLWGLTRLYGLA 752 Query: 463 GNPDEAERLAKLALE-ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH 521 G+ AE A G + + G G+ R+ ++ R Sbjct: 753 GDLAAAENAAVDGQAFCRWAGDLWLGAMIQLQRGVSHLLGGQFDRAQEILLAARADLRAC 812 Query: 522 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI------ 575 + + + + Q A ++A L + L + + Sbjct: 813 SDRFGQAVATLWLALGYYEQRHDAAATAAIDEALDLSATAGYDYLFTRPTFLGLPDPRRV 872 Query: 576 --RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD-NARSQL 632 A + S + + + L + RGD + AR Sbjct: 873 IPLLLATRARGHHRDYIERLLSAMGLRGLEAHPGYQLRVQTLGMFRVWRGDHEIEAREWQ 932 Query: 633 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL-RHTAKPEFANNHFLQGQW 691 L + AA + A Sbjct: 933 RDKARQLFQALIVHRNRWLQRDELAELLWPQLNPEAAVRDFKVALSALYRALEPNRTEAT 992 Query: 692 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR-----NLLLLNQLYWQAGRKSD 746 + P + + E + L + Q Q + Sbjct: 993 SAFIAREGSAYRLRPTADIWLDCAEFSAGCTTGLRLLDQGQIGAGMQRLQAALQLYQGDF 1052 Query: 747 AQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRA 795 + + A R S F+ + +AQ L + Q L L + Sbjct: 1053 LPDTIYEGWADAERERLRSMFLRSADRLAQCLAEQGQNEELIALAERIL 1101 >UniRef50_C7H4E9 Transcriptional regulator, LuxR family (Fragment) n=2 Tax=Ruminococcaceae RepID=C7H4E9_9FIRM Length = 804 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 143/868 (16%), Positives = 265/868 (30%), Gaps = 95/868 (10%) Query: 20 ERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND---IGWYSLDEGDNQQERFAS 76 ER+ L + L + +P GYGKTT I+ + + ++ + + F Sbjct: 13 ERVQETLRPVSVSALTAVVAPMGYGKTTAINWFLNQRKQTENAVILRVNIYSDNRSIFWK 72 Query: 77 YLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNP 136 +VQ A + + AS + + P YL +DD+HL+ + Sbjct: 73 ----SVQNAFAAAGLTALAGCEYPEDASSAAQLMDDLCTVLAGDRPCYLFLDDFHLLKDE 128 Query: 137 VIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFD 196 + + PEN+ L+V SRN LR+ +L IG +QL H E + Sbjct: 129 KAAKFLCGLANRLPENVHLIVASRNNFLPKEEILRLGHRLHRIGKEQLRLNHTELAHY-A 187 Query: 197 CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLV 256 R + A+ + GW +A+ L S + + + + Sbjct: 188 HRCGMDLTEAQVDSLLRSCEGWFSAIYLNLHSLAERG---------ILLSEDADIYSMFA 238 Query: 257 DEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGE 316 +L+N+ + FL + + VT + L + Q F+ R+ D G+ Sbjct: 239 AAMLENLPPKMQEFLAMMGLADEFTVEMAQAVTEMPDAAEILRTLTEQNAFVTRLPD-GK 297 Query: 317 WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDI 376 F +H + + + + + A+ A+ A GD + Sbjct: 298 TFRFHHMLKECAERLFARLAPEKQDACRKRYGAWYEAKLQYLHALTAYEACGDYDAALQV 357 Query: 377 LLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAE 436 + A L + L E L P ++L ++P +L+ M + + ++ L Sbjct: 358 IERDAGILLTSLGSAELLERLGRCPVETLKQHPFAILVLMRCMFNWRQIPKMMELKELLL 417 Query: 437 HEIKDIRE------DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA 490 + + E + E + + + + N + RL + A ++ + Sbjct: 418 TTVAEHPEWSQEEKGNLLGECDLILSFLMYN--DISAMSRLHRSASAQMSHPASSIQNSG 475 Query: 491 TS------VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 544 VL G+L R LA M + + H I ++E QG Sbjct: 476 GWTFGSPSVLMMFHRQPGQLDRELAEMDECMPHYYKITNGHGMGAETIMRAEADLQQGQF 535 Query: 545 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 604 A E+A+ I + A L E+L + Sbjct: 536 DDAQILLERAYAQIEGNGQTNMT---LCCDFLAWRLSLCGPYTPRVPLEVRREELLRQHN 592 Query: 605 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 664 + A+ RG D + + + + + G Sbjct: 593 MAWRNLFHAICAYYYALRGQTDGIPEVY--AAHRMNTVNTLAPGKPMIGLIENQVYLAQG 650 Query: 665 DKAAAANWLRHTAKPEFANNHFLQGQWRN--IARAQILLGEFEPAEIVLEELNENARSLR 722 + A A ++ L +A A LG + +LE+ A Sbjct: 651 EWARVLGRGPGLLAMCEALHYDLVALHLRIQMAAACARLGRQDEGRSLLEQALAQAALDG 710 Query: 723 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLI 782 + N L LL+A + + + G A ++ R L Sbjct: 711 FVVPFAENFRDL--------------EPLLEAAQEGPHANAVRCILALGAAQQERCRALN 756 Query: 783 QLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQ 842 + LPE +R E Sbjct: 757 RSEALPEAAARLTER------------------------------------------ELA 774 Query: 843 VLGLIYSGYSNEQIAGELEVAATTIKTH 870 + LI +N++IA L ++ T+K + Sbjct: 775 LARLIADRCTNKEIAARLFLSEGTVKQY 802 >UniRef50_Q67R98 Transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67R98_SYMTH Length = 1080 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 182/856 (21%), Positives = 309/856 (36%), Gaps = 36/856 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIG 60 ++ SKL P HT+VR RL +L A + L ++ + GYGKTT + + + G Sbjct: 7 VLKSKLLPPRLRRHTLVRPRLHQRLLEALDVPLTIVQAGPGYGKTTALVSFLSAAPCRWG 66 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQ--KRQYASLTSLFAQLFIELAE 118 WY++ D F +LI AV A G + Q + T + L +L Sbjct: 67 WYAVSAEDQHPLPFLLHLIHAVNAAVPGLGERAAALLQSAAGPHRPWTQVVDALTADLHG 126 Query: 119 -WHSPLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRVRDQ 175 L +V+DD+H + P I + FI H P ++ L + +R P L G+ R Sbjct: 127 HAGQELLVVLDDFHHVDENPQIVALVEQFIEHMPHHVHLALATRRRPPLSGLPRWRALAD 186 Query: 176 LLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHS 235 ++E+ + LAFT E ++ F + + +++ + GW ALQL R+ + Sbjct: 187 VVELSEKDLAFTPAEVEELFLDQYGIRLTDEQTAALAARTEGWIIALQLAWQGLRKGSSL 246 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 N L DYL EVLD R FLL + +L ++ +TGE + + Sbjct: 247 QD--FWEGQPKNLDTLFDYLAHEVLDRQRPFIRRFLLTTCVLERLHPRACDHLTGEGDSE 304 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 L +E GLF Q + D F YH LF FLR++ + A H AAA ++A G Sbjct: 305 RVLAALEESGLFTQAVGDGE--FRYHQLFHQFLREQARQ-DPASWRTHHLAAARYYLAAG 361 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 A HH G+ D +L A + + L L LP ++ P L+L Sbjct: 362 SAETAAHHFAEVGEFDQAADAILQAADGMIEAGRVEALGAFLARLPQETYSRFPALLLRC 421 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 + + R+ E +A + + +D A+V ++ +P +A+ A Sbjct: 422 GDVARLTSRFDEALAYYGQAAEKYAVLGDDRGRCLALMGEARVYLDTISPGKADDALVEA 481 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 R ++L E +G + + A A + + Sbjct: 482 QRLAHALTDRERADLMALLAENETNRGRP-------ENAARFASMAAASTGAPVDDLLEV 534 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 L G L A E+ L + H + + + + A Sbjct: 535 RSLLRTGRLAEAMRILER---LARQGLAGASRAHREVPLLISYIAALMGDTRLTRTGAEE 591 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDL----DNARSQLNRLENLLGNGKYHSDWISN 651 GI + + ++ + ++ + + D + ++ L+ Sbjct: 592 GIRLGKEKRSPF-VEGVGLMRRAHALQLDPHAPDEAVAAEYQAAIALMDEINVTRGKAEP 650 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEI 709 + + Y G+ A A ++ +A+ A + F ++ + LG E AE Sbjct: 651 LAGLALFYGHRAGNWAQAEHYGLESARIARAACDQWFHGYALLSLGSSAAALGRTE-AEG 709 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVI 769 L E + + L + L + + + AL A G+ F Sbjct: 710 YLREAEKEFAATGDPYGLALARVWQALLAHRQRDWAGFAASMESALAAAQEHGYGYLFTR 769 Query: 770 E---GEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 G Q L L+Q + A R+L EI + RL Sbjct: 770 RTLFGPQDPQALVPLLQEARRRGIHPAYATRLLAEIGMTDPE----HHPGYTLRLRTLGA 825 Query: 827 VPELIRTSPLTQREWQ 842 +T+REW+ Sbjct: 826 FQAWRGRQEITRREWR 841 >UniRef50_A1RBQ1 Putative transcriptional regulator, LuxR family n=1 Tax=Arthrobacter aurescens TC1 RepID=A1RBQ1_ARTAT Length = 878 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 175/900 (19%), Positives = 311/900 (34%), Gaps = 49/900 (5%) Query: 8 SRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIGWYSLDE 66 + P + R RL+AKL + LI +PAGYGKT L+SQW + + W S ++ Sbjct: 18 AVPRLPLVLLARSRLVAKLDDTADT--VLICAPAGYGKTLLLSQWLEDQAHKVAWLSPNQ 75 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 + + ++ A++++ + + A + L ELA + + LV Sbjct: 76 HNRE--ALWPAMLQALRRSPAIPPGALRQFSGDEEDA--VEVLGDLAQELASTGTSVRLV 131 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 ID ++ + + + L +++R+ + R+ +++E+ S LAF Sbjct: 132 IDGVDGFSSDERERWIPALLNQSGPPIQLALVARDSTAVDAGPARLSGRIVELRSSDLAF 191 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 + +E + + + +GW + L R+ + A Sbjct: 192 SLEEINVLAAKTTTLT-GMHQRRELFRQTAGWPACVVLALRYLREAADTEAPLGDIAA-- 248 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 N LSDYL ++ + RH L +++ R + A + G N L + Sbjct: 249 NNRQLSDYLDHHIIRTLSGEERHVLSSTSVCRVVVAAQANTLAGHRNAGSILSSLADDRD 308 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALA 366 ++ + F HPL F R + EL R AA+ G P + HA+ Sbjct: 309 LVESAGSGRKVFLVHPLIRAFFRAELARKQPDELLRFSRIAAQWHEQAGEPEATLRHAMD 368 Query: 367 AGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYG 426 + D ++ ++L H SL E+ + ++ ALP + NP L ++ A + Sbjct: 369 SADNGLIGEVLERHGASLLGSGEVMQVRRAIAALPDAAFATNPTLCVVAALAHVESRQPT 428 Query: 427 EVNTLLARAEHEIKDIREDTMHAEFNALRAQV-AINDGNPDEAERLAKLALEELPPGWFY 485 +A A D + +A++ NDG D+ + Sbjct: 429 TATRYMAAANRTRADDLPPDLRELQALAKARLSWFNDGWEDQDPQATADYAALRFSRQSD 488 Query: 486 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ 545 RI A V +G+ + A + + A ++ + QG L+ Sbjct: 489 VRIEARMVSVTAALVEGKYGTAENEASAALMEATEAGNAYLAGKVYLKLAATYSMQGQLR 548 Query: 546 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 605 A A + + A A EA A +G+ L Sbjct: 549 RASHFLRLAEDKLPAHVWTAGAGRSVGALMHASAALLRAEPAEALRFAAAGVAELGQLGA 608 Query: 606 QQQLQCLAMLIQC-------SLARGDLDNARSQLNRLE-NLLGNGKYHSDWISNANKVRV 657 + AM + GD NA + + + + + + + Sbjct: 609 ASKGVGAAMRATLEIITACAHMDSGDRRNALEGMRQARLRIGRDHLFAQPLAACIAVIEH 668 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 + G A L + A+ + F+ A L+ + Sbjct: 669 TAALVLGHADHAREVLEWAEERIPGTGELC----LLRAQGPAGISRFDAAADRLKPFHTG 724 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 A L +L + + GR+S A ++L +AL+ A+ + I + Sbjct: 725 AVKPVLEWTRLHVNVLECSMAIRTGRRSLAGKILEEALRQADDLDVLRPLAIAPHEVIDL 784 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLT 837 L + R E +RLL + R LT Sbjct: 785 LVE--------------------------RAGSYGPQETLAQRLLVLRPPTDARRAQALT 818 Query: 838 QREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMM 897 RE +VL L+ S S EQ+A EL ++ T+KTH+R +Y KLG R DAV A + + Sbjct: 819 PREREVLTLLPSHLSQEQMAAELHLSVNTVKTHVRIIYSKLGAGSRHDAVAAAYKSGYLP 878 >UniRef50_C7Q4U6 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q4U6_CATAD Length = 935 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 187/941 (19%), Positives = 332/941 (35%), Gaps = 86/941 (9%) Query: 15 HTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK---NDIGWYSLDEGDNQQ 71 + R+ L+A+L A ++ +IT+PAG GK++L+ WA + + + + Sbjct: 24 PLIARDGLVAELDQAAAGKVTVITAPAGSGKSSLLRAWADRQDRQHRLAIVQVPRDQPDG 83 Query: 72 ERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYH 131 + F L+ V++ + A A A+ + ++ +LAE + L+IDD H Sbjct: 84 QLFWLSLLTTVRRLSGEPIAADPPAAAPEFSAA--TAVERILEKLAEIPERVSLLIDDVH 141 Query: 132 LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEA 191 +T P + + P+++++++ +R L + LR+ QL ++ + L F+ E Sbjct: 142 ELTAPETFADLTRLLADLPDHVSVILATRRNLPLRLHRLRLTGQLTDLRAADLRFSEDET 201 Query: 192 KQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHL 251 + + A +R+ + GWA L+L LS + A G + + Sbjct: 202 RALLAAS-GITLSDAGVARLLERTEGWAAGLRLAVLSLTGHPDPERFVAEF--GGSNRTV 258 Query: 252 SDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRM 311 ++YL+ E+L+ + LL+++IL ++ L +TG + L ++E F+ + Sbjct: 259 AEYLLAEMLERQPQDIQDLLLRTSILTRISGELADALTGRVGSEPILLDLEDANAFVVSL 318 Query: 312 DDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDAL 371 D WF YH LF + L+ + E +HR AA+ + G EAI H AAGD Sbjct: 319 DAERTWFRYHHLFADLLQLELRRVHPDEGRGLHRRAADWFAEAGMTVEAIRHTQAAGDWS 378 Query: 372 MLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTL 431 ++ +HA+ + +L ++ L+A P + P L +++A + R E Sbjct: 379 AAANLFSHHAFGMMLDGQLETMQSLLEAFPTGPAADLPALSVVRAMVDVWHGRLDEAAAH 438 Query: 432 LARAEHEIKDIREDTMH-AEFNALRAQVAINDGNPDEAERLAKLAL-------------- 476 LA A+ A+ +AL +A G+ D RLA++ Sbjct: 439 LAAAKAGPDPAPPSARAEAQISALELVLARRRGDVDTVLRLARVLAVSTTSAYACPPASA 498 Query: 477 ---------------------------------EELPPGWFYSRIVATSVLGEVLHCKGE 503 + R++ LG V G Sbjct: 499 CALAVEAGSDSESESESGSDSVSTPTSTSAAVSADELALGADLRVLVLMNLGIVEAWAGG 558 Query: 504 LTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL 563 L + ++AR + + L Q + E+A L Sbjct: 559 LADGATYLTHAVELARVIGRPYLEVTCLAQLAFATKLH-SFAETRRVCEQAVALAARHGW 617 Query: 564 EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE-VLSSYQPQQQLQCLAMLIQCSLAR 622 + P+ + A L + + + E +L L + Sbjct: 618 DTAPVLAPALVTLACLQVFTGEFEHGQDTIDRAEEALLLDAGADIGLLHRTTKGMLHATQ 677 Query: 623 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 682 G L A ++ +L +Y G AA + F Sbjct: 678 GRLAEAEAEFAAAYDLQSQMRYPHALSGYVAGWLAAAKARRGSTDAARAVIDKLDATLFD 737 Query: 683 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 742 + A + G+ A V+ + + S + L L Y ++G Sbjct: 738 SGEIRN----ARAVIALREGDVAGALDVVTPVTNGSASAVHATTLVEANALEALAYHRSG 793 Query: 743 ---RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRIL 799 + AQ + AL A I V M L + IL Sbjct: 794 IPASAARAQEAVERALAAAEPERLILPLV-----MVGAGEVLETVPRQRSAHASLLTDIL 848 Query: 800 REINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGE 859 I+ A E L+ E ++L + + S QIAGE Sbjct: 849 DIIHGSAPAATASDQPAVPE----------------LSPTELRILRYLPTNMSRPQIAGE 892 Query: 860 LEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMGYG 900 L V+ TI TH+R++Y KL R AVQ A++L + Sbjct: 893 LSVSVNTISTHVRSIYAKLQATDRASAVQRARELRLLAAGP 933 >UniRef50_C8X3C0 Tetratricopeptide TPR_4 n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3C0_DESRD Length = 1031 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 162/818 (19%), Positives = 265/818 (32%), Gaps = 27/818 (3%) Query: 4 PSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWY 62 +K +RP V R RL +L I +PAG+GKTTL++ + A + W+ Sbjct: 8 QAKFARPAL-SQVVPRARLFDRLREHGRSSFLWIAAPAGFGKTTLVASYLEAQEVPSVWF 66 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP 122 LD GD F L AV+ A ++ + + F+ L + A Sbjct: 67 RLDGGDGDPNSFFLTLEQAVRLVFPDAPACVGPRFEQPLSSLSRNFFSHLSLVCAPQ--- 123 Query: 123 LYLVIDDYHLITNP-VIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 YLV D+ H + + E + + L +V +SR+ P L D+L E+ + Sbjct: 124 TYLVFDNAHELEDSHEFWEMLSTGLACAGPALRVVFMSRSSPPDPFVTLLASDRLRELPA 183 Query: 182 QQLAFTHQEAKQFFDCRLSSP-IEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 ++L +E + I +A + +GWA L+L+ R SA Sbjct: 184 EELRLNREEVVEMVRRDPPQAGIGSALIPNLLAACNGWAACLRLVLRHLRFAPLSAQWVD 243 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 L Y E+ +D R FLL A+ + + TR+TG LE Sbjct: 244 LD---RPPPELVTYFSTELFQAIDPDLRCFLLNLAVFPWFDADMATRLTGVAEAASILER 300 Query: 301 IERQGLFLQRM---DDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAESWMAQGF 356 + + F D + +H LF NFLR + + + ++ + A G Sbjct: 301 MAGESFFTSVHRSAPDAPSIYIFHSLFRNFLRVEARKIFSSEQWQDLFQRAGRLLEEAGD 360 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 AI+ AAGD L HA SL LE L LP P V A Sbjct: 361 AEAAINAYSAAGDTEAWVATALRHAPSLLASGRHKNLERWLAPLPAQCQKRWPWTVFWLA 420 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 + + L A+A +D + A R I+ P A A Sbjct: 421 GSRFPES-IAQSRDLYAQALDLFQDQGDHRGMLLAWAGRMACLIHGQAPRPAVVSALELF 479 Query: 477 EELPPG------WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 + ++R V + + ++ + A + + Sbjct: 480 DTDLTTFYSLEKDEWTRAVVAAAVFLAKVLCAPEPETIRWGETALGFAERLQAKDLLIHV 539 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 +G + + + L LP L AR +EA Sbjct: 540 CFGAVLYFLPRGENERLAGLITQVRFQCSVPALPALPAATLLATDM-LGRMTQAREEEAL 598 Query: 591 ASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 A A G++++ + L C++ GDL+ A L+ + + + Sbjct: 599 ALATQGLQLVRQSGVTLFEAFFLGYSAACAMNTGDLEAAERFLDSMAKASLATRRWDRSL 658 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL--LGEFEPA 707 + G A A W+R E + AQI LG E A Sbjct: 659 YCFLS--ARLSLLRGAYADAERWVRQVLDREEDEGPLGTLCLSLVGAAQIAFCLGWREQA 716 Query: 708 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 E L + AR + + G + + VL AL L R Sbjct: 717 EERLAQAGVLARQYQFTLAEWAAAMAQAYWALAEGDRDSCRAVLKPALALGRRNMLYVTL 776 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQH 805 V +A+ ++ Q ++ ++ Sbjct: 777 VDVPAQLAEVCVAALEEGMEVPYVQRLVRQRRLLPSRP 814 >UniRef50_A5VE23 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VE23_SPHWW Length = 855 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 164/892 (18%), Positives = 311/892 (34%), Gaps = 54/892 (6%) Query: 15 HTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKNDIGWYSLDEGDNQ 70 R+ L L+ A + +L+++ PAGYGKTT+++QW + W + D Sbjct: 2 ALCRRDLPLRSLNVARSGKLSILYGPAGYGKTTILAQWRQDLIDQGLPVAWITAAREDGD 61 Query: 71 QERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDY 130 + F L+ A++ A E S + L P +++D + Sbjct: 62 PQAFLKVLMLALRDAGVDLG---EAGLWASGDISAARRLEGAILALERSGKPAVIIVDAF 118 Query: 131 HLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQE 190 + P + I P+++ LV+ SR P+L ++ R + IG +L F E Sbjct: 119 ETVNEPSMDAMFADLIEMLPDHVHLVLASRQRPRLTLSTHLARGNVRLIGPDELRFNENE 178 Query: 191 AKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH 250 Q + + A++ + + + GW A+QL L A S+RR + Sbjct: 179 MAQML----GATVTASDLAALSERTGGWPIAVQLHQLWLASAPEGAELSSRR----PMAE 230 Query: 251 LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQ--GLFL 308 L+ Y+ DEVL + A R L +I + L V E+ + LEEI GL Sbjct: 231 LTQYMADEVLRTLTDAHRDLLTDLSIFPEIETNLADHVRQSEDSALLLEEISDLLPGLIE 290 Query: 309 QRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAG 368 + + HPL + ++ + + AA EA++ A+ Sbjct: 291 RHGAGIETSYRLHPLIADHAGRQLKT-GRGREALLRHRAALWLWNDRRHGEALNQAILGH 349 Query: 369 DALMLRDILLNH-AWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGE 427 D +LR +F L L+ LP SL ++P++ L +A ++ + + Sbjct: 350 DNGLLRLFTETLPTLEIFLAHGTDELRAVLRVLPPGSLRQSPRIRLAEALILSKAGLFKD 409 Query: 428 VNTLLARAEHEIKDIREDTMHA-EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS 486 + E +D + E +R+ +A + +A + + P Sbjct: 410 AWKIAEAVAAESAGGDDDPLQETERLTIRSIIASHFMTACSVADMALDRISRIAPTTPLY 469 Query: 487 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-WHYALWSLIQQSEILFAQGFLQ 545 + G+L + + + +I A+G L Sbjct: 470 CAFLDTGRLLTYQQSGDLEAARMALARARAAYDSSGDFPFSHSHLRAHALQIALAEGRLG 529 Query: 546 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 605 A E + + + + + + A + + +L Sbjct: 530 DASELSHAMLAEHQDSPMAHI-WLAMARTALSAVEYCRTYRLRAADQVKMAMVLLGEGDA 588 Query: 606 QQQLQCLAMLIQCSLARGDLDNARSQLNRLE----NLLGNGKYHSDWISNANKVRVIYWQ 661 +L A D A L + G + A + Sbjct: 589 TFDQYA-IVLPIILDAAMRRDGADMALQEIAVATKRFAERGLISMTIMMEALVLLYQLRS 647 Query: 662 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI-LLGEFEPAEIVLEELNENARS 720 + + L +P A+ + R+ + E A V + + + ++ Sbjct: 648 GSAPRTIDPRQLDLALRPPSASPWRERDSVRHAVALHAISVASPETALSVAQAMLRDGQA 707 Query: 721 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ 780 + + L+L + + + G + A R + +AL+LA ++ F EG A+ L + Sbjct: 708 GGRVGTRIKALVLTSLAHEREGDRPAADRSMTEALRLAVDESVVAPFAEEGPALHPILER 767 Query: 781 LIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQRE 840 + + +L +H + + + S LT RE Sbjct: 768 IAREEPTSKLARHLEKIL--------------------------QLISASSHPSQLTDRE 801 Query: 841 WQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 ++L + G SN+ IA L + T+K H++N++ KLGVA R++A A + Sbjct: 802 AEILAHLADGVSNKLIARRLALTENTVKFHLKNIFAKLGVASRKEAAACAFR 853 >UniRef50_A4XRD7 Regulatory protein, LuxR n=2 Tax=Pseudomonas RepID=A4XRD7_PSEMY Length = 868 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 197/903 (21%), Positives = 324/903 (35%), Gaps = 72/903 (7%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG---WYSLDE 66 P + R L +L A+ RL L+ +PAG GK+ L+ Q A W L Sbjct: 20 PRLPPAVISRLPLEQRLL-ASEARLRLLCAPAGAGKSVLLGQCARQTPAAVARLWLDLGG 78 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 + + L AA+QQ A L L L++ Sbjct: 79 RSLTPAQLCTRLAAALQQPATDVNE------------------AALLEMLQAHSGRLWIF 120 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +DDY + + + P +T V SR P + L ++ LLE+ Q LA Sbjct: 121 LDDYPRQPDGELDACLDRLFAAAPAQITWWVASRRTPAWNLPRLLLQGDLLELEGQDLAL 180 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 + L + R+ GW A++L+ L + + R+ Sbjct: 181 DEVGLAELLTA-LQLNLGEDLGQRLLQSSEGWLAAIRLLLL------DADEDALRQRLQA 233 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 L DY+ EVL ++D R L A+L + L + G L E++R+ L Sbjct: 234 GCPLLRDYVQREVLADLDDELRSDLHALALLPRFSAPLCEHLLE-GRGSELLAELQRRQL 292 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALA 366 F++R+D +G WF LR + A +H A + + G EA+ HAL Sbjct: 293 FVRRLDSSGTWFRLWRPLAAVLRSLPGGLVPA---PVHVRACQWFARHGDIREAVEHALQ 349 Query: 367 AGDALMLRDILLNHAWSLFNHSE-LSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRY 425 AG + + L + ++ L + + LP +P+L++LQAW + R+ Sbjct: 350 AGQVEVAVNYLQRFSQEQLLQGHSVAQLLQWREELPAWLFASSPRLIVLQAWALIICARF 409 Query: 426 GEVNTL---LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG 482 E L + R+ + A + AL +A G D A + AL+ L Sbjct: 410 DEARACTEALTHFLPQPDARRQRKLLAHWQALSGVLARQCGRRD-ARQHCLEALQALDDS 468 Query: 483 WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 542 + RI+ L + + L ++ + + +++R H Y + +L QG Sbjct: 469 GWSQRILCYQALAQQYLAENALDQARQALDEGLRLSRLHGSLIYEALLNTDRCLLLEMQG 528 Query: 543 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 602 A E E++ L+ + P+ L+ +RA LL + A + R G++ Sbjct: 529 EAGRAAELAEQSLTLLR-GRVSHSPVVGRLLLLRASLLARQGLDETARQAYRQGLQEAEF 587 Query: 603 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRVIYWQ 661 + + ++ + A GDLD A L + E ++ + Sbjct: 588 CEDAYTISGYLGQVELAEACGDLDEAYQWLQKAERVMQCSHVPEVRYRGVLQLQAGRLLL 647 Query: 662 MTGDKAAAANWLRHTAK--------PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 A T + L R +A + +LLG AE L Sbjct: 648 RQEQYGRAREVFAQTLQQLQQRQQLAPSGFYDLLPRLRRYLAVSDLLLGHHAAAEHALRL 707 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 L + + S + L + G A+ +L AL A + + + + Sbjct: 708 LLDECQMAGHRSLSCECRVALAESLLLQGHDEQAEALLQQALGEARQLRLLRPLLELQQR 767 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 Q L +L+ L Q Q + P T Sbjct: 768 QPQWLERLLPGEAGQSLHQRLFQ------------------------PPPTLDEPASAGT 803 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 + L+ RE VL LI G SN++IA L ++ T+KTH R + KLGV R AV A+ Sbjct: 804 ALLSSRELAVLQLIAQGCSNQEIADRLFISLHTVKTHARRINVKLGVQRRTQAVAMAKAY 863 Query: 894 LKM 896 M Sbjct: 864 GLM 866 >UniRef50_C1TPX1 ATP-dependent transcriptional regulator n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TPX1_9BACT Length = 832 Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 158/873 (18%), Positives = 297/873 (34%), Gaps = 74/873 (8%) Query: 21 RLLAKLSGANNFRLALITSPAGYGKTTLISQWAA----GKNDIGWYSLDEGDNQQERFAS 76 RL KL +FR I +P+G GKTT I + I W+ E + Sbjct: 18 RLKDKLRKIRDFRTTFIEAPSGAGKTTAIRDFFNCPNMNPPSIRWFVASEE--PGTSGWT 75 Query: 77 YLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNP 136 + + + + + AQ ++L YL+ D++ + Sbjct: 76 RFCHVLGEIDPYVGSRLLHLGFPVEDNQGE--VAQALVDLV-CDDETYLICDNFQFVHKN 132 Query: 137 VIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFD 196 + R + H L +V++++ L G+A L +L + ++ L T +E ++ Sbjct: 133 LPLSVWRALVDHGGYGLRVVIITQQLSSRGLAIL-GNANVLRVENEDLCLTEEEIGDYY- 190 Query: 197 CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLV 256 C ++ + R+ GW AL L + AR + S + + + Sbjct: 191 CLAGVDLDLDQRRRLYLYSEGWIAALYLQLVGY----------ARTGSLEGRSSIHELVN 240 Query: 257 DEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGE 316 + + + L R L + + S ++ + G + L E LF+ R D Sbjct: 241 ELLWKGLSLEDRQVLFRLSPFDSFTVPQLSFLLGLDRVPDVLVERLGGWLFV-RYDIESR 299 Query: 317 WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDI 376 + H + +F+R + E A I AA E +QG ++A+ D + + Sbjct: 300 RYFLHAILLDFVRSAIRDEPEAFQRGILAAAGEWCASQGDKTQALFFLYRICDYRGIFSL 359 Query: 377 LLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAE 436 L+ + L E + D++ + + R ++ A Sbjct: 360 DLHCYD--MTRATLDAGREYMLKFLRDTVNNST-----------VEMRCDYAFNFISMAF 406 Query: 437 HEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGE 496 + + A + D + +E+ R + L FY+ I A Sbjct: 407 EAFNLGDVELYVGLCREMEAVLDGYDID-EESRRSLRGELYLARSFGFYNDIEAMG---- 461 Query: 497 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 556 + +R+ L+ ++ + + G L ++ Sbjct: 462 -----KDHSRAYELLGPNSRLFK--PDTPWTFGWPSVLGMFHSGAGELDRELSDMDRWLP 514 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 616 L L + RA+ L R DEAE +E+ C A L+ Sbjct: 515 LY--NSLTSGNGSGAELIFRAEALLHKGRDDEAEPLVLRALEITKRLNQDSLYLCAAFLL 572 Query: 617 -QCSLARGD---LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 672 + +L RGD R+ +R + + + A + GD + Sbjct: 573 QRMALLRGDGPVFTEGRAMRDRCAR-MSSYALSNRITDVAT---GFVSCLLGDTEGMPSR 628 Query: 673 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 732 + + + R +L G + EEL AR R + + Sbjct: 629 VCSEGFL-TGASPAVPFSCMVYGRLALLTGGERDLVLRSEELLFPARRYRNLLVEIYMGI 687 Query: 733 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 792 L+ Y + GR+SD L AL +A G I F + + L +++ E + Sbjct: 688 YLSVAYSRLGRESDGAEALGRALDMAMPDGLILPFAENADVLGSSLDVVMEERWSSERNR 747 Query: 793 HRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYS 852 +++ E ++ L V LT RE V L+ G S Sbjct: 748 F----------SSFVKRYSLGKERVLQSLSGREAV------EGLTFRENDVALLVSEGLS 791 Query: 853 NEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 N +IA L ++ T+K ++++++QKLG++ R+D Sbjct: 792 NREIAKRLFLSENTVKFYLKSIFQKLGISSRRD 824 >UniRef50_C8XCA9 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XCA9_NAKMY Length = 846 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 179/880 (20%), Positives = 333/880 (37%), Gaps = 43/880 (4%) Query: 26 LSGANNFRLALITSPAGYGKTTLISQWAAGK-NDIGWYSLDEGDNQQERFASYLIAAVQQ 84 + A + LI++ G GKT ++ WA + W S+ D+ F + L+AA++ Sbjct: 1 MDRAVAAPVTLISAGPGSGKTLALADWAQSTNRRVAWLSVGASDDALPAFWAALVAALRA 60 Query: 85 ATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRF 144 + + + + + ++ LA+ +PL +V+DD H + + + S+ Sbjct: 61 SGASVGSGLSDLLPAASFGEQDAR--RVVDTLAQMRAPLTIVLDDLHHVRDRHVLRSVET 118 Query: 145 FIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIE 204 P ++V +R P L L V D+L+EI + QLAF EA Q + + Sbjct: 119 LFECLPPTAHVIVSARFDPPLRWRRLAVADRLVEIRADQLAFDAAEAGQLLT-MVGLRLG 177 Query: 205 AAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVD 264 A R+ + GWA L+L A + +N A ++A + ++DYL+ EVLD + Sbjct: 178 PAPLGRLVERTRGWAAGLRLAASALDRN---APEAAVSRLRGSDRPVADYLMQEVLDQLP 234 Query: 265 LATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLF 324 A R F+L+S++ ++ + +TG + Q RLE +E F+ + WF +HPLF Sbjct: 235 DADRDFVLRSSVADPVSAEMAQALTGVVDAQARLESLEATNGFVVGLAGGRTWFTWHPLF 294 Query: 325 GNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDIL-LNHAWS 383 L R E ++H+ AA + QG AI H A D + +L A Sbjct: 295 RELLLHRLTVEKPGARDDLHQRAARWLVGQGDYLAAIRHLTAVADWPGVGRLLTERLAPD 354 Query: 384 LFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIR 443 + + +L+E + N +L A Y + + AE + Sbjct: 355 VVTSAASALVEALTPVANRAEVDPNATTLLASAVCNFHHSEYAAMIRDVEAAEAAARREH 414 Query: 444 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP-------PGWFYSRIVATSVLGE 496 + +P R A+ LE P R +AT+ LG Sbjct: 415 NPIAVEVLASSLRMAHSRALDPATLTRTARRVLEVTRPISRPDVPALERYRAIATTNLGS 474 Query: 497 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 556 L G+L+ + + + + ++ + + L + + + G + A E A Sbjct: 475 GLLLDGDLSAARSALIEAQKSCNRWGLGLSELTARGGLALLAALHGQPRIALERARAARA 534 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 616 ++ P + + + EAE G + ++ + + Sbjct: 535 TADQYGWAPEPQAAAHMTALVIVALDTGEVQEAEQLLGLGTRDT-NLALASRIMFAVLAL 593 Query: 617 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 676 Q ++AR DL +A + L + + + G A L Sbjct: 594 QAAIARDDLSSADRRAGLLALTAQRIALPRLLAGWVSVAQAEHLLAHGRVEDARQVLGQI 653 Query: 677 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 736 + + + N+AR + + A L L + + R ++ R + + Sbjct: 654 SDG----GYPAARRDLNLARCHLAQDDPRRALQSLTALIPSLSAYRTVAVHARVVAAVAA 709 Query: 737 LYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQ 796 + + + + A +L DA++LA T + F+ G+ + L + + A Sbjct: 710 I--RLRKDAQALDLLTDAVELAAETSMLGPFLAAGQPLRPLLARYRTVVGRHAEFTTAAL 767 Query: 797 RILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQI 856 + +P LT+RE VL + + + QI Sbjct: 768 GGV---------------------PPGEQPIPVAANGQELTERERAVLPFLATHLTATQI 806 Query: 857 AGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 A EL ++ T+K+H + +Y+K GV+ R+ AV + L + Sbjct: 807 AEELFLSVNTVKSHQQAIYRKFGVSSRRAAVDRGRDLGLI 846 >UniRef50_A2SDT6 ATP-dependent transcriptional regulator-like protein protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SDT6_METPP Length = 919 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 195/901 (21%), Positives = 301/901 (33%), Gaps = 40/901 (4%) Query: 4 PSKLSRPVRLDHTVVRERLLA-KLSGANNFRLALITSPAGYGKTTLISQWAAGKN----- 57 SK P V R LLA L A + RL L+ +PAG+GKTTL+ Q AA Sbjct: 46 SSKHRIPRARRDVVPRPALLAPVLEQAADARLVLVQAPAGFGKTTLLVQLAAALATAASG 105 Query: 58 -DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 + W SLD DN R + L A+ T+ + Q AS + A + Sbjct: 106 AQVVWVSLDAEDNDANRLFAALFGALAPLDLPWAVPPATVLAQLQDASPAARTALGLLTD 165 Query: 117 AEWHSP---LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 A P + LV+DD H +T+ + + I P L L++ SR P L +A R Sbjct: 166 ALGVRPESRIALVLDDLHHVTDAAALQLLDTLIARAPPELCLLIGSRTAPPLSLARWRAG 225 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 +L+E+G + L F A+ R A GW L L+ SAR T Sbjct: 226 GELVELGLEDLRFDLGAAQALCRLRGLQAPSDAALQAALARTHGWVAGLHLLLGSARAGT 285 Query: 234 HSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN 293 S A HL DY EVL + + F+L ++L ++ AL VTG ++ Sbjct: 286 GSLPALA---GPAAHRHLFDYFAQEVLAGLPPPLQQFVLYGSVLPELSPALCQAVTGRDD 342 Query: 294 GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 + L+++ + LFL +DDT +H LF +FLR + +H + A Sbjct: 343 ARAVLDDLFGRQLFLSALDDTVPVLRFHDLFRDFLRGELERREPGHAAALHA---LAAAA 399 Query: 354 QGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 + A+ H LAAG L A L LE L LP L Sbjct: 400 ETRAERAVPHWLAAGRWAEALAALRQMADGLLAVGGTHRLERWLDQLPLAWREAQADAAL 459 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 L+ S+ +G R+ + G D AE + Sbjct: 460 LRGLCAWSRWDWGLARDEFQRSHDAYAQQGRPRDRYVALGMLGACHNALGELDRAEAVLA 519 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 A + P ++ S+ +G+ L + A + Y + Sbjct: 520 DAAD--APLPPALQVAFDSLQAWHGVARGDGAAVLTGLAAMADNAARAPEARYPNIVDMS 577 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASA 593 G E+ +L L A EA Sbjct: 578 YGHFTGLPGT----RPLMERLGRLCRADQPGGEVQVPALHAWLAFWHGEPGTAREALHEL 633 Query: 594 RSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 L + L + A+G A + + ++ L+ + W Sbjct: 634 LQRQRQL-PGDTMLGIGALHLHSLHLAAQGHTAEALAAIAQVPALM-TPGFSRGWRRTYA 691 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI--ARAQILLGEFEPAEIVL 711 V+ GD A L ++P A + + + +L GE A L Sbjct: 692 HVQARLHWRAGDADGLAALLPDLSRPRSAREWPVLDTGAPLLQGQHALLCGELAAARAHL 751 Query: 712 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 771 E RL + + L G A L D L A + + ++E Sbjct: 752 ERAALLQAGARLPAFMGDARCALALCRAAQGEPEAAAAALDDLLCEAVQDDGLGSLLLEP 811 Query: 772 EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELI 831 A Q L Q + + + ++ Sbjct: 812 PARLQALWQALAPRLRCPAA--------------AQARLRGRLAAWLAEGPRAAVADAAP 857 Query: 832 RTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 PL+ RE +V+ L+ G SN+ IA L ++ T+K H+ N+ KL + R A + Sbjct: 858 PDDPLSAREREVMALLAEGQSNKLIARALGLSLHTVKRHVANILTKLALDSRTQAAAYWH 917 Query: 892 Q 892 + Sbjct: 918 R 918 >UniRef50_A1TY93 Regulatory protein, LuxR n=4 Tax=Gammaproteobacteria RepID=A1TY93_MARAV Length = 878 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 137/887 (15%), Positives = 283/887 (31%), Gaps = 48/887 (5%) Query: 19 RERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND---IGWYSLDEGDNQQERFA 75 R+RL A S ++ L +P GYGK+ ++ A ++ Y Sbjct: 31 RQRLGA--SATPEAKVVLYRAPPGYGKSVQVALAANRRDPEHESAVYINGRSYPDPREVT 88 Query: 76 SYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITN 135 L AA+ E + S T L L + + +D + Sbjct: 89 DSLFAAL------VLYQIEGPESREALKSDTDTIEALRDALFNARKTIRICLDGPGEGAD 142 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF 195 + + I P+N+ + + L + ++ G+ +LAFT ++ K+ Sbjct: 143 NG--DLIEDLICETPDNVKFFIA--PGSAGALPRLSLMTGVVTYGADELAFTEEDLKEPE 198 Query: 196 DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYL 255 + I +E+ I GW ++L+ L + Y Sbjct: 199 KLGEVTGIGGSEAGNIIQATGGWPALVRLMR----------QTPNPDLPPESWPETRSYF 248 Query: 256 VDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTG 315 D +L + R F+ +A+L ++ V + + + + L +G Sbjct: 249 RDNLLSVLPRHARRFVCNAAMLEEVSAECYDYVYKTQQADQEISFVNEKFALLAPTVSSG 308 Query: 316 EWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRD 375 E HP+ +LR + + A +G +I+ AL A D R Sbjct: 309 ERLAMHPVLRGYLRSVFNATQRERRSYVLKRVAFWHWRRGEYLHSINVALEASDHRWARV 368 Query: 376 ILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR 434 + + E+ +L + +P ++ + L + AW + + + +LA Sbjct: 369 VSDSIILDVALRQGEIEVLRTWFEKVPVRTIKKIASLGIGYAWTLYFSQQARQAEEMLAS 428 Query: 435 AEHEI-KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSV 493 ++H I + + ++A E++ L + ++ + A + Sbjct: 429 SDHPISRGLGNLDEEGWRELVKAIGKATQDELSESQTLCEKWIDAFGDRNMVGKGAALTC 488 Query: 494 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 553 + L+ + + + + +W + + +G + A + Sbjct: 489 QAFIASSDRRFEELEELLHRAAVANQSSNQLYAFIWLKTAEIQTELFKGDMVRAMYLLRQ 548 Query: 554 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 613 A + + + + +++ L + Q+L + SA+ + +Y L Sbjct: 549 ANKTAEKIGVPKSFLNKMLGVLELQILLEQDHHQVSPESAQISFDFALNYGVTDILCGCT 608 Query: 614 ML-IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 672 + +G D A + L + L + + + + ++ Sbjct: 609 QACSRLLYHQGLRDRAMALLEQA-RLAASERELPRLNILTKVQLAEFTLLNNEELEPPIL 667 Query: 673 LRHTAKPEFANNHFLQGQWRNIA--RAQILLG-EFEPAEIVLEELNENARSLRLMSDLNR 729 + N + + ++ LG +F A E + A ++ Sbjct: 668 PDESELSFLPNQNRAIQARIALVKSMYRLRLGKQFGVAGNYAREALQAASAISDARTRVA 727 Query: 730 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 789 + G A+R++LDA A + EA+ L P Sbjct: 728 AQYCQALAAFALGSSKPAKRLILDANLHAEHLNCHFTPLWIKEALLSLSPLARNLFDDPP 787 Query: 790 LEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYS 849 A D L+ P VP S +T R+ +L I S Sbjct: 788 DTAEAA---------------TTRDPEVRAEDLSAPPVPGHTD-SVITVRQISILKCISS 831 Query: 850 GYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 G +N+ IA L V +K H++ ++ +L V R AV A+ + Sbjct: 832 GMTNKAIAERLLVTEDAVKWHLKRIFSELEVTSRVQAVTEARLRGLL 878 >UniRef50_Q1NQI1 Transcriptional regulatory protein-like:transcriptional activator domain n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NQI1_9DELT Length = 1085 Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 142/817 (17%), Positives = 278/817 (34%), Gaps = 41/817 (5%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNF-RLALITSPAGYGKTTLISQWAAGKN-DIGWY 62 +K++ P D +VRERL L + +A ++PAG GKT+L + + A + WY Sbjct: 8 AKINPP-GADDILVRERLFTLLDKGFSRQPVAWFSAPAGSGKTSLATSYLAARRLSCLWY 66 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP 122 +D+ D F YL A + + ++ + + F EL P Sbjct: 67 QVDQRDGDPASFFYYLGLA-GKKAAPRRRRPLPLLTPEHLPNIPTFTLRFFEELYRRVQP 125 Query: 123 -------LYLVIDDYHLITNPV-IHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRD 174 +V+D++ + + + + PE + +++SR P +LR R+ Sbjct: 126 GSPTKGEFVIVLDNFQDAPPASPLADIVSRGLSIMPEGVRAIIISRAGPPPAFVDLRARN 185 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 ++ +G ++ F E + R + I + + +GWA L L S + Sbjct: 186 RVCFLGWDEIRFNRAETRDLIKAREPAKISRQATDELYAATNGWAAGLILFLESLARGGT 245 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENG 294 + G + D+ E+L+ D ++FLLK+A M A+ ++T + Sbjct: 246 DSAPG----NGFAREPIFDFFAREILEKSDEQLQNFLLKTAFFPKMTAAMAAKLTRNPDA 301 Query: 295 QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ 354 L + + F Q++ T + YH LF FL R AA ++ AA Sbjct: 302 DRILSGLHKNHFFTQKLTHTKPIYQYHALFREFLMAR-AEAAAAAPEDLRHKAAAILEQA 360 Query: 355 GFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL 414 G+ EA + D L ++L A L +++ + + LP + + + L Sbjct: 361 GYYEEAAEIYCSLHDYDGLTRLILTQAPVLAADGRNAVITQWISCLPGEIVQASAWLSYW 420 Query: 415 QAWLMQSQHRYGEVNTLLARAEHEIKDIREDTM----HAEFNALRAQVAINDGNPDEAER 470 Q + + L RA K R+ A A + D Sbjct: 421 QG-VAGFCADVKQSQELFERAFALFKKERDPAGIFLSWAAVVETIAFAMEDLNQFDHWVA 479 Query: 471 LAKLALEE---LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 527 + + + +P +R+ + V ++ ++ + + Sbjct: 480 IFDSLMRQWKSIPSPEIEARVASQFVAAVIMRFIPHRDFAV-WRDKAI----KQPDARPR 534 Query: 528 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 ++ + G + A L L + L ++ Sbjct: 535 FRAMFHLAMYHLQLGDVVGAKLYIRSMQSLAKAADAAPLDLIS-LKLAEVTFHGRTGAIE 593 Query: 588 EAEASARSGIEVLSSYQPQQQ-LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 646 A ++R G+E + L L Q + GDL + + ++ L S Sbjct: 594 LARRASREGLETAARSGVHLLDFMILGNLAQPEMQYGDLATSIEHMRKMGALAEE--RPS 651 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL--GEF 704 + + + + G+ AA + K + W ++ +A + GE+ Sbjct: 652 FDRAFYEHLASLQELILGNLRQAAVHVDLALKFIARAGFPVGQIWIHLLKALVSCEQGEY 711 Query: 705 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 764 E AE +++ S L+ + G L L +A GF Sbjct: 712 ELAEAHIDKA-AGIDIGTRGSTEFDLLMTRAYVDLARG-GDQYPAALRRGLAVAREEGFW 769 Query: 765 SHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILRE 801 F + L +L + ++E + +++ Sbjct: 770 DSFF---PWSMKFLGRLCLVALEHDIETGYVRELIKR 803 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 42/342 (12%), Positives = 86/342 (25%), Gaps = 37/342 (10%) Query: 397 LKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRA 456 L + L+ L L + + A Sbjct: 564 LAKAADAAPLDLISLKLAEVTFHGRTGAIELARRASREGLETAARSGVHLLDFMILGNLA 623 Query: 457 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 516 Q + G+ + + + R + G L ++ + + Sbjct: 624 QPEMQYGDLATSIEHMRKMGALAEERPSFDRAFYEHLASLQELILGNLRQAAVHVDLALK 683 Query: 517 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 576 + +W + ++ + QG + A +KA + L+ R Sbjct: 684 FIARAGFPVGQIWIHLLKALVSCEQGEYELAEAHIDKA---AGIDIGTRGSTEFDLLMTR 740 Query: 577 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM--LIQCSLARGDLDNARSQLNR 634 A + A D+ A+ R G+ V +M L + L + D + Sbjct: 741 AYVDLARGG-DQYPAALRRGLAVAREEGFWDSFFPWSMKFLGRLCLVALEHDIETGYVRE 799 Query: 635 LEN-----------LLGNGKYHSDWISNAN--------------------KVRVIYWQMT 663 L + + + S + Sbjct: 800 LIKRQGYTPENPPVHIEHWPWPVRIYSLGRFELLINDTPAAFTGKLRKKPLELLKILMAP 859 Query: 664 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 705 G++ +A L P+ + + NIAR + LLG + Sbjct: 860 GNREVSAGQLSDLLWPDADGDLARKSLEMNIARLRKLLGRPQ 901 >UniRef50_A5V3K4 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V3K4_SPHWW Length = 861 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 163/889 (18%), Positives = 296/889 (33%), Gaps = 51/889 (5%) Query: 20 ERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIGWYSLDEGDNQQERFA 75 R+ + L+ +PAG+GK+ + + A LD+ D RF Sbjct: 11 RRIDDLAPRIARHHVTLLRAPAGHGKSVALDRLRAAIEAGGERCAALLLDKRDADLSRFF 70 Query: 76 SYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITN 135 + A+ + A+ A P L +D + Sbjct: 71 RRVAQAL---------------GVDPAQPDAAGVAEAVEVGAADDRPALLFLDGIDEAGD 115 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF 195 + + L V+ SR G+A LR +D++ IG QL FT EA F Sbjct: 116 VLPPALSDLIL--FAPGLRFVIASRESNLPGLAKLRAQDRVAVIGPDQLGFTRAEALAFL 173 Query: 196 DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYL 255 E A+ R+ D GW L+ + A + ++A ++D+L Sbjct: 174 GAS-----EDADVLRLVDRCEGWPILLKFVRDGLDAGDPPT--LAGDMGSVSAGLIADFL 226 Query: 256 VDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTG 315 +++L + FL ++A++ L + E + +E + R LQ G Sbjct: 227 DEQILAPLLPEDADFLERTAVVSRFTLDLARLLAPEAAVEQSVERLGRAAGLLQARRLNG 286 Query: 316 EWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRD 375 W+ +P+ L +R Q + +++ +HR + EA+ HA A D Sbjct: 287 LWYHVNPMLRATLMRRFQARIGSDVRRVHRMIEAWMIEHDAVDEAVLHACLAQDYDECVQ 346 Query: 376 ILLNHAWS-LFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR 434 ++ + L L L L ALP L P L + +A ++ + R + L+ R Sbjct: 347 LVRRFGPANLSMRYGLRTLRSVLAALPRHYLDHEPALGISEALVLSKEGRVSDARRLIHR 406 Query: 435 AEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA---LEELPPGWFYSRIVAT 491 + L + + LA LP + Sbjct: 407 LRDKAGGHAAAAGALGDLDLLDIMLACHADQPLMPGLADRLSAVAAALPHDDVIHQGWVQ 466 Query: 492 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 551 +++ V G T + A E + D + + + + QG Sbjct: 467 NLICRVHLSLGNFTHAAAAGIAAEHYYARSDSRYGQFFVHLHLASTRSWQGLYDQVGSHI 526 Query: 552 EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 611 + A + + E M +RA+LL+ + D + ++ Sbjct: 527 DSAESIAVQHFPEDPAMATLCRLLRAELLFDQGQADLGIDLLPALQSAENNDGWLDLFVS 586 Query: 612 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 671 RG A + R + +R + G + A Sbjct: 587 GYRTAALHAFRGGGLEAALAVTRRGDEAALRIGLPRLALVMQILRAELLSLAGHRNQAGA 646 Query: 672 WLRHTAKPEFANNHFLQGQWRNI----ARAQILLGEFEPAEIVLEELNENARSLRLMSDL 727 LR P + + + AR I +F A ++L+ L + + Sbjct: 647 ALRAIRVPSNGEDDARWRERLALGIANARLLIHSRQFRRATVLLDTLEGECERRGIGRLV 706 Query: 728 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTL 787 + LL L +G A L++ L+ A + + F+ EGE MA+ + + Sbjct: 707 AKVGLLRALLLACSGSPQRAIATLVELLQSAQQPS-MQAFIEEGELMARLCSLVAHHSQR 765 Query: 788 PELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLI 847 L ++ + + + D + S L+ RE ++L + Sbjct: 766 HALGPEASRFLAELSERLGQSYEHVIDRD--------------AGGSYLSAREREILLSL 811 Query: 848 YSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 G SN+ A L V+ T+K H++ +Y+KLG +R A+ AQQ + Sbjct: 812 AQGESNKSTAERLNVSEATVKFHLQRIYRKLGAHNRVKAIAVAQQQGLL 860 >UniRef50_Q2SH33 Probable regulatory protein, luxR family n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SH33_HAHCH Length = 896 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 165/913 (18%), Positives = 296/913 (32%), Gaps = 59/913 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIGW 61 + K S P+ + R RL KL A ++ +T+PAG+GKTTL+ WAA K + W Sbjct: 7 LKGKFSFPLASQIVISRSRLTRKLDAARQAQIHCLTAPAGFGKTTLMQDWAAPQKGRVIW 66 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 ++ + DN+ R L+AA A G E + + + EL Sbjct: 67 FTAERSDNRLLRLGGGLLAAFANAGYGFLGCKEELGLLNEPSGAAHWSRLFIAELETAAR 126 Query: 122 P----LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 L LV+D+ HL+ P + +R P L +LSRN + +++ Sbjct: 127 RTGASLTLVLDNLHLLDAPEAIALLSCLVRDLPAPHRLCLLSRNPLAPALFASTSWNRVQ 186 Query: 178 EIGSQQLAFTHQEAKQFFDCRL-----------SSPIEAAESSRICDDVSGWATALQLIA 226 + + +LAFT +E KQ+ SP + S + GW +A Sbjct: 187 HLNADELAFTLEEGKQYLRALQAEGLLGRYAAPGSPGMQTQLSELWRQTDGWPIFFCAMA 246 Query: 227 LSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVD---LATRHFLLKSAILRSMNDA 283 A + Y+ ++V+ + + L + A + N Sbjct: 247 HRMANRNTP---FAAKEELNTLPDFHRYMEEQVMQPLQLVQKDMQTRLRELAPISEFNRD 303 Query: 284 LITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEI 343 L+++ ++ + + ++ TG+ +C LRQ E + Sbjct: 304 LLSQCLLPGESPALIQAMIHYTGLIVKVAQTGDEYCLRRPLREHLRQDATSTT--EASAL 361 Query: 344 HRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWD 403 A +A AI + G +L SL + + + + L A+P Sbjct: 362 FNKAFRWRLANNQGRAAITLCIDNGYWRAAVHLLEKLYPSLVSAGCWTQVVQWLAAVPAH 421 Query: 404 SLLENPQLVLLQAWLMQSQHRYG-------EVNTLLARAEHEIKDIREDTMHAEFNALRA 456 + + P L +L + + TLL+ A+ + L+ Sbjct: 422 IVGQRPLLQMLLGRKALFESAPASALVHFKQAQTLLSSAQELDHPDGVYDASSRAKWLQE 481 Query: 457 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 516 A+ +L E +R G +G L + + + + Sbjct: 482 ASALIASTQALYVTGHDQSLAEQDSSCLLTR----YHQGLHALHQGRLHETRKRLNEVME 537 Query: 517 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 576 A D + + + G + I Sbjct: 538 AA-LADDPGMLTQVIPVLGWLHYLTGETDLWRSGLASLRERIAPGCDLSHGFAWTSASTL 596 Query: 577 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 636 LL + D + + + + + A ++ D A L E Sbjct: 597 FGLLENASTDDVKQGLQDASVLHGLCAPVELRFNLAAAQALLAIREARWDEAGEALLEAE 656 Query: 637 NLLGNGKYHSDWISNAN-KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 695 L + + ++ G + A + L+ Q + ++ Sbjct: 657 VLQHSIPDPVRRTLFSLPALKAQRLLAQGGEREALHLLQAWGGHYDQACFATQHEQLILS 716 Query: 696 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 755 L E + ++ A R L R L + + GR+ AQ+V DAL Sbjct: 717 EILFALNRPEESLEPARQVKVWAEQGRCGLLLTRALAIEALALQKLGREEKAQQVFHDAL 776 Query: 756 KLANRTGFISHFVI-EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFD 814 + T + V + M L Q P + ++I+Q Sbjct: 777 HVGRMTSSLHSLVRKDAPEMKPLLSAAKQQGRYPAYVGRLIEHYGQDIDQDDDD------ 830 Query: 815 ENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNL 874 + L++RE QVL L+ +G SN +IA L + T+K H+ N+ Sbjct: 831 ---------------SANLAALSKREKQVLDLLVTGMSNPEIADALCRSLGTVKIHVHNI 875 Query: 875 YQKLGVAHRQDAV 887 Y+KLG A+R A+ Sbjct: 876 YRKLGAANRVAAI 888 >UniRef50_UPI0001C312D5 ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C312D5 Length = 758 Score = 258 bits (659), Expect = 8e-67, Method: Composition-based stats. Identities = 155/667 (23%), Positives = 257/667 (38%), Gaps = 13/667 (1%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWYS 63 +K P TV + ++ +L + LA + +PAGYGKTTL+++WA A W + Sbjct: 14 AKFVVPATRPGTVGKAEIVGRLRSSG-APLATVLAPAGYGKTTLLARWAQADPRPFAWVA 72 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 LD D+ F + A+ + + + ++ +LTS ++ LA PL Sbjct: 73 LDARDDDAVMFLRSVAMALHRILPLSRQVLDALSGP-GGPTLTSRVPRVGSALATVERPL 131 Query: 124 YLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQ 183 LV+DD H + + + + + + PE + V SR P L + R + +L EIG Sbjct: 132 VLVLDDLHEVASTSCLDVLAALLDYVPEGSQIAVASREAPALPLGRWRAQGRLDEIGVND 191 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L + +EA+ ++A S+ + + GW L L ALS R + + Sbjct: 192 LRLSQEEARLLLAAA-GVELDAGASAALVERTEGWPAGLYLAALSLR--AGAPASAGAAG 248 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 + +SDY E+L + A FL +SA+L M +L V LE +E Sbjct: 249 FAGDDRFVSDYFRQELLSRLPAAEARFLQRSAVLERMCGSLCDSVLETARSARMLEGLEG 308 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQW-ELAAELPEIHRAAAESWMAQGFPSEAIH 362 F+ +D GEW+ YH LFG LR + E A + ++ A +A G A+ Sbjct: 309 TNCFVVPLDRRGEWYRYHHLFGELLRDELERSEPPAVVRTLNGRAMAWCIAHGEQEAAVR 368 Query: 363 HALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQ 422 + AAG+ + ++ L+ + LEE + + L P L + AWL Sbjct: 369 YGQAAGETDAVAVLVDALGLPLYYDGRMETLEEWIGWFGEEELTRYPALAVYGAWLRMLT 428 Query: 423 HRYGEVNTLLARAEHEIKDIREDTMHAEFNALRA--QVAINDGNPDEAERLAKLALEELP 480 R+ E LA AE I A A + + ++A LAL+ LP Sbjct: 429 GRHAEAERWLAMAERATSTIPLSDGSASIEPWVANLRACMMRDGVEQALVDGDLALQRLP 488 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 P + R A V G V G R+ + + + + + Sbjct: 489 PESAW-RPAALVVRGAVHALSGAEGRATDDFSAAVKTGLAFGSADVVFVAEAELALLALK 547 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG---I 597 +G A E A L+ + L + A++ R ++ A+ Sbjct: 548 RGAWTEAGERARAAVALVEDTGLGDYSTSAIAHVVAARVALHEGRREDGRAALARAHRLR 607 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 +L P +Q L + LA D AR+ E +L + + ++R Sbjct: 608 PLLDEGIPWLTVQVGLELTRAHLALADPGAARTVFEESERILALRPQLALLVDEMRELRG 667 Query: 658 IYWQMTG 664 G Sbjct: 668 HVAATAG 674 Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 64/431 (14%), Positives = 126/431 (29%), Gaps = 19/431 (4%) Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 +L +EL + + + + + + + Sbjct: 331 ELLRDELERSEPPAVVRTLNGRAMAWCIAHGEQEA------AVRYGQAAGETDAVAVLVD 384 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 L+ G ++T E E+L + L A L R EAE Sbjct: 385 ALGLPLYYDGRMETLEEWIGW-------FGEEELTRYPALAVYGAWLRMLTGRHAEAERW 437 Query: 593 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 S+ + + A D L + L S W A Sbjct: 438 LAMAERATSTIPLSDGSASIEPWVANLRACMMRDGVEQALVDGDLALQRLPPESAWRPAA 497 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAK--PEFANNHFLQGQWRNIARAQILLGEFEPAEIV 710 VR ++G + A + K F + + +A + G + A Sbjct: 498 LVVRGAVHALSGAEGRATDDFSAAVKTGLAFGSADVVFVAEAELALLALKRGAWTEAGER 557 Query: 711 LEELNENARSLRLM--SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 L S ++ ++ GR+ D + L A +L ++ Sbjct: 558 ARAAVALVEDTGLGDYSTSAIAHVVAARVALHEGRREDGRAALARAHRLRPLLDEGIPWL 617 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 + L + P + + R + + + + + P Sbjct: 618 TVQVGLE--LTRAHLALADPGAARTVFEESERILALRPQLALLVDEMRELRGHVAATAGP 675 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 LT E ++L + + + +IAG L ++ T KT ++Y+KLG + R +AV+ Sbjct: 676 AGSWAMSLTGAEIRLLPYLATHLTFPEIAGRLFISRNTAKTEAISIYRKLGASSRSEAVE 735 Query: 889 HAQQLLKMMGY 899 A ++ + Sbjct: 736 RAVEVGLLERS 746 >UniRef50_Q5YUK9 Putative transcriptional regulator n=1 Tax=Nocardia farcinica RepID=Q5YUK9_NOCFA Length = 872 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 168/896 (18%), Positives = 293/896 (32%), Gaps = 53/896 (5%) Query: 9 RPVRLDHTVVR---ERLLAKLSGANNFRLALITSPAGYGKTTLISQWA---AGKNDIGWY 62 PV V R + G + R L+ +PAG GKT L + A W Sbjct: 22 VPVLGFPLVPRAAADAEFEHFLGPGSARALLVCAPAGSGKTVLAAHHALSDDVTRPPVWV 81 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP 122 ++ N +R+ L + + A T+ QL ++ P Sbjct: 82 TVTAELNDADRWWHRLGDCFG---------FDPTGPAGEPAGATAAAEQLLAAVSAGPGP 132 Query: 123 LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 LV+DD HL+T+P++ + IRH P L +V+ R P + L + ++ +G+ Sbjct: 133 RVLVVDDAHLLTDPLVLAGLEHMIRHAPPFLKIVLCGRFEPPIRWQALELDGRVTRLGAG 192 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 L+F + + E +++ D GW ++++A+ + A R Sbjct: 193 TLSFDTAQIAAVLAQH-GCELTPEELAQVTDITRGWPALVRIVAIYLAAHAED-RDRAVR 250 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 + ++D+L E++ + R F+ +++I S L + G + +E Sbjct: 251 VLARAPHAVADFLCGELIAALPEQVRQFVSETSIPASYTPELAEHLAG-PAAPSHIAYLE 309 Query: 303 RQGL-FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 R F + G W YHP+ + Q AA L E+HR A + G ++A Sbjct: 310 RINFPFTSVDTERGRWISYHPMVRRYFATELQRVDAARLGELHRQLAGWYTVAGMYTQAF 369 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 H LA G +L D L + + + E L +L +P + +L+ Sbjct: 370 DHVLATGSDELLVDFLRAEGVAATLLGCGAAVLEMLDQA-QPALSNDPFVWMLRVIDALE 428 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 + + + L D AL + + A E LP Sbjct: 429 RGDAAQAHAYLDLVRARGGDTESVAPPEWLRALLLGGQAHVRTVPPGDPGAVAIPEPLPT 488 Query: 482 -GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 G G + G+ + +A L ++ + + Sbjct: 489 VGRADIDGYLAVHAGMLRVLHGDRVSGERDLLVGLALAEHAQQPRLVLHAVCRLAMAAGV 548 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 600 G L T E +A +L E + + A + + AR + E + Sbjct: 549 AGELTTVRERARQAVELAVEFDADGTADAVLAATMAAFVDYLQARREPRELVSPPARRRR 608 Query: 601 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 ++ Q ++ DN + LLG + + V W Sbjct: 609 DGTTEPTAGWWAEIVTQLTVLDAAPDNHAAAARLRRGLLGLLDEVGAAATTGGLLPVAIW 668 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 720 + + L L +A L + EL Sbjct: 669 SLLHLREDTVVQL-----LVHRARVVLGPTCPEVALGAAALAHTAGKPAAVHELVVPLLG 723 Query: 721 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ 780 + LLL + GR + L AL+ A + F+ A+ Sbjct: 724 SDHPMIVVPALLLYATSSDRLGRTRTSAEALELALQQAVPDHLVRPFLDVPGAVPLLASH 783 Query: 781 LIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQRE 840 L + +H V + LT E Sbjct: 784 AGSFGHLDRFADE---------------------------IRHHLAVRRHLTGHSLTGTE 816 Query: 841 WQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 +VL + +G + QIA +L V+ T+KTH+R +Y KLG+A R DA+ A+Q + Sbjct: 817 LRVLKHLPTGRTTSQIAADLGVSVNTVKTHLRGIYGKLGIASRADALTEARQRGLL 872 >UniRef50_C5C615 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C615_BEUC1 Length = 749 Score = 254 bits (650), Expect = 8e-66, Method: Composition-based stats. Identities = 153/674 (22%), Positives = 259/674 (38%), Gaps = 14/674 (2%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDI 59 +L+ +KL+ P R V R L+ + R+ +T+PAGYGK+T++++WAA + Sbjct: 17 LLLDAKLAVPARRTAAVSRADLIQGARSSGR-RVVGVTAPAGYGKSTMLAEWAALEDRPV 75 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W SLD D+ L +A + ++G + M + L +L L Sbjct: 76 AWVSLDTLDDDPSSLLVVLASAFARVSDGPEGLVADMVGP-DASVLGRAAPRLASALRRS 134 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEI 179 +P LV+DD H + +P H+ + + P LV SR + LR +++EI Sbjct: 135 PTPFVLVLDDLHELQSPACHDVLGVVVAGIPAGSQLVAASRTEQP-HLPRLRAAGEIVEI 193 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 + L Q F P+ ++ + + GW + L +L AR + A Sbjct: 194 VASDLVLDVAGTLQVFAASH-VPVSPEAAAAVTERTEGWPVGIYLASLIARHSGGDAVAV 252 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLE 299 +++DYL E + R FL ++A+L ++ L VTGE + L Sbjct: 253 T-----GEDPYVADYLQRESYRRLPEDMRTFLRRTAVLDNLCGPLCDEVTGEPGSREMLR 307 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 +E LFL +D WF YH LF FL A + + R AA+ + A G P Sbjct: 308 RLEASSLFLVPLDRRRWWFRYHALFREFLLGELTTVEAQLVDGLRRRAADWYEAHGSPER 367 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ L D ++ +LF +LS + + L+AL D+++ P L +L ++ Sbjct: 368 AVEQLLQTSDRERCVRLVTRLVMTLFQAGQLSTVGKWLRALGDDAVVAYPPLAVLAGYVA 427 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL 479 + R GE A + D A F++ RA L AL Sbjct: 428 AYEGRAGEAERWGAVVDAAAFDGEMVDGSASFDSARAMYRALRCPQGPQALLDDAALAVA 487 Query: 480 -PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 P W R A + G G++ + ++T A ++ Q ++ Sbjct: 488 SEPEWSVWRDTALTASGLARLLVGDVDGAAREFERTVAAAAAVGNADTLVFCEAQLAQRD 547 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 G + E A I E + P A+L L E G+ Sbjct: 548 MDHGQWERGRERIRHALDAIEEHRMYDYPTSAPAFAAAARLALHDGDLAETRRLLTRGMR 607 Query: 599 V---LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 V + P ++ L + S A GD+ R L ++++L + + + Sbjct: 608 VRTFCTYAFPTLAVRARMHLARTSWAAGDVAAVRHLLREIDDVLLHRPNLGVLVDEVADL 667 Query: 656 RVIYWQMTGDKAAA 669 R + + + A Sbjct: 668 RQEFGAGSRAASMA 681 Score = 86.1 bits (212), Expect = 6e-15, Method: Composition-based stats. Identities = 51/404 (12%), Positives = 113/404 (27%), Gaps = 11/404 (2%) Query: 497 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 556 + + + ++ + Q + + + LF G L T + Sbjct: 351 LRRRAADWYEAHGSPERAVEQLLQTSDRERCVRLVTRLVMTLFQAGQLSTVGKWLR---- 406 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 616 + + + L + + R EAE + Sbjct: 407 ---ALGDDAVVAYPPLAVLAGYVAAYEGRAGEAERWGAVVDAAAFDGEMVDGSASFDSAR 463 Query: 617 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 676 A ++ L+ + + S W A + + GD AA T Sbjct: 464 AMYRALRCPQGPQALLDDAALAVASEPEWSVWRDTALTASGLARLLVGDVDGAAREFERT 523 Query: 677 AKPEF--ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM--SDLNRNLL 732 N L +A+ + G++E + + R+ Sbjct: 524 VAAAAAVGNADTLVFCEAQLAQRDMDHGQWERGRERIRHALDAIEEHRMYDYPTSAPAFA 583 Query: 733 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 792 +L G ++ +R+L +++ + + M + Sbjct: 584 AAARLALHDGDLAETRRLLTRGMRVRTFCTYAFPTLAVRARMHLARTSWAAGDVAAVRHL 643 Query: 793 HRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYS 852 R + + + E PL+ E ++L + + + Sbjct: 644 LREIDDVLLHRPNLGVLVDEVADLRQEFGAGSRAASMATSVPPLSPAELRLLPYLQTHLT 703 Query: 853 NEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 +I L V+ T + I ++Y+KLG + R +AV+ A + + Sbjct: 704 IREIGERLFVSRNTASSEIGSIYRKLGASSRSEAVRQAVTMGLL 747 >UniRef50_A3UHL3 Transcriptional regulator, LuxR family protein n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UHL3_9RHOB Length = 871 Score = 254 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 143/893 (16%), Positives = 271/893 (30%), Gaps = 53/893 (5%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQ 70 + R+RL ++G + L +P G+GK+ I+ A D G D Sbjct: 25 KLTQGCLRRDRLD--IAGHPGAKCLLYQAPRGFGKSVQIALCAQSAADRGD---DCIYLD 79 Query: 71 QERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDY 130 F ++ A+ L L +W P+ + +D Sbjct: 80 LSSFWPESVSEADLIATAIVAMLSPPDLPVTSGDRGPEIIAL-RLLFDWKRPVMICLDGV 138 Query: 131 HLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQE 190 + ++ PE + LVV + L V ++ IG ++L+FT E Sbjct: 139 --SDSAATQRFLKTITLETPEAVRLVVSG--HQPGTLVTLSVVSHVVTIGPRELSFTLDE 194 Query: 191 AKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH 250 P+EA +++I + +GW L S A S Sbjct: 195 TCSIL------PLEADRATKIYNKTAGWPLLCALAGKSKASGDAIADL----------SE 238 Query: 251 LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQR 310 + Y +VL + L+ ++ L + V + +L E+ + L Sbjct: 239 VQAYFETDVLAQITRPLLDHLINASWLEEITADCSDYVFKINDSSCKLAELASRHGLLIS 298 Query: 311 MDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDA 370 + + + + +LR R + + A + + AL A D Sbjct: 299 SVEKPKCYEMNRALKEYLRNRFIEANGSRRSYFLKRIAFWHWRKKEYRLVVDVALRAHDH 358 Query: 371 LMLRDILLNHAWSL-FNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVN 429 + + + L E+ L +P LL+ P L + AW++ R E Sbjct: 359 NWAKRLTDQALFDLALRQGEIEALTIWFTGIPRAKLLQMPSLAIGYAWVLYFSQRAQEAQ 418 Query: 430 TLLARA--EHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSR 487 +L+R + E+ + + A E++ ++ Sbjct: 419 DVLSRLNDQRVSAPSEEEDSNGWGKLVHAIGLATHDELKESDERCAAWVDTYGSANPVGH 478 Query: 488 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTA 547 A + + + + ++ + W G + A Sbjct: 479 AAAQTCRAFIAASGRQFAALSDQIASATVVSGAVRHRYAFGWLAAAGILAKLLNGDIYGA 538 Query: 548 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 607 +A + N H + L Q+ + E + ++ + Sbjct: 539 RSEIRRAQKNENVAHERTPFIKGMLAAFELQVQTEEESITPDERLVQEALDFALEFGVTD 598 Query: 608 QLQ-CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 666 + + + + +GD A L R + + I V Sbjct: 599 VVWNTVRSAAEIYIRQGDTLQAFLLLERCRLMAKDRGLKRLGILVRLGSEVFAMGTRTST 658 Query: 667 AAAANWL---RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 723 + L N A + G+ AE+ + N ++R Sbjct: 659 PLSTEPLPSDEDLLFLPNQNRAIQAEIALLEASRFLRDGKLGLAEMHARKALSNFSAVRD 718 Query: 724 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQ 783 R L + G K A + + DA A + G + + Sbjct: 719 QRGEIRAQYTLATAIYLMGEKKQALKRIADADLKAQQLGAFRSL-------------INR 765 Query: 784 LNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQV 843 + L + + + Q R K D ER P R++P++Q++ V Sbjct: 766 RHFLRVISPAAKAFLDQRTTQVARTKVPAHDVQITER-------PFAYRSAPISQKQVIV 818 Query: 844 LGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 L G SN++IA + V T+K H R + + L VA+R +AV A+ L + Sbjct: 819 LQHAALGLSNKEIAVRMHVTEDTVKWHFRKILRGLNVANRTEAVMAARSLSLI 871 >UniRef50_A5V1C9 Transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1C9_ROSS1 Length = 1095 Score = 252 bits (643), Expect = 6e-65, Method: Composition-based stats. Identities = 161/829 (19%), Positives = 285/829 (34%), Gaps = 29/829 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDIG 60 ++ +L P + + R R+ L+ ++ + L+T+PAG GKT ++ +A G + Sbjct: 20 VLLPRLEPPPQPARLIERPRIDGLLAAVADYPVTLVTAPAGGGKTVALTGFARHGGWPVA 79 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W LD D A +L A + T + T+ + +L L Sbjct: 80 WCRLDAAD-TPISLALHLATAFRPITGFDPSCFVTV-------HPVDVLDRLINALTALG 131 Query: 121 SPLYLVIDDYHLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRVRDQLLE 178 LV+DD H P + + I P L LV+ SR +P L + + R +L Sbjct: 132 DETLLVLDDVHCADRRPELRVLIEHLIDRLPPRLHLVLASREMPSLAPLPTVAARGELYR 191 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + QLAFT++EA++FF P + + GW AL+ A + + H+ Sbjct: 192 LNRAQLAFTNEEAREFFAA-CGLPPSPYD-DELNTLARGWPLALRFFATARVDLGATQHE 249 Query: 239 SAR--RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 RL A L YL EVL ++ R +LL +A++R ++++ V + + Sbjct: 250 PILPERLLEHIAPQLDAYLAREVLGDLPFDLRTWLLGTALMRWIDESACAAVAELADLHI 309 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 L+ IER LF++ + D + R IH + + +G Sbjct: 310 DLKMIERHELFIETLPDGRSVYQP---LQAASFARLAERELPNWRSIHAQLGQYYATKGD 366 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 A HH LAA L A + + ++ L ++ +P D N L+ +A Sbjct: 367 DHGAAHHFLAAAQWEEASAALSRMALAGVSGAQAVALLSWIEQIPTDH-RNNAALLEARA 425 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLAL 476 + RY + +AE + + +A+V I+ P A L K A+ Sbjct: 426 IAERRLGRYAQALESYRQAEDRYRAQGDMDGQVRALRGQAEVYIDTVQPAPAAVLLKRAM 485 Query: 477 EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-----RQHDVWHYALWSL 531 + LP R S+ E +G ++ ++ + A R S Sbjct: 486 KLLPRHRRAERATILSLQAENWINRGRADVAIFIIAAAHREAYGRTSRGDPGGGGLRRSA 545 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + +L G L A E+ L + + +H + + A + A A Sbjct: 546 VLSPRLLLRSGRLVEARRLLEEELGLDTGRARGEHMLHRDPLLLLALIECMLGNGVRALA 605 Query: 592 SARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 A+ G+ P + L L D + R+ + + Sbjct: 606 LAQRGLLEAQRGDSPLTEAIAHMRLGHAYLVTASSDEMAYRHYRIALDMIESSGIPRMRA 665 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE-PAEI 709 + G+ AAA + R +A + + A Sbjct: 666 EVMMGLTLLEGHAGNLAAAEAYAREGLDRTLEAGDDWMAALIWLALGSVAATAGDPRAAQ 725 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF-- 767 L E + L+ + Q+G++++A R L L L + GF Sbjct: 726 WLHEAQQRFVRGDDQYGQTVALIWEAHILLQSGKEAEADRTLARLLGLIDACGFDGVLTT 785 Query: 768 -VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE 815 + G L L+ + + + + A D Sbjct: 786 RTLFGPHDLAVLVPLLLRGRALRGAASAQAAVAQRLLRQGFPSIAADDA 834 >UniRef50_A5VDQ9 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VDQ9_SPHWW Length = 888 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 163/898 (18%), Positives = 310/898 (34%), Gaps = 59/898 (6%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGKNDIGW 61 +L+ P R LL L A RL L+ PAG+GKTT ++QW W Sbjct: 15 RLAPPALQPGLCERTLLLRSLDVACAGRLTLVIGPAGFGKTTALAQWHASLVRRGQTACW 74 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 ++ E + RF L A++ A + + S+ L + L Sbjct: 75 CTMSEEERDPSRFLWMLALALEAAGIALDGD---VLRTVSDGSVGLACDALLMALERAAP 131 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 +VI+++ I +P I + + PE++ LV+ +R P+L I+ LRV+ ++ I Sbjct: 132 KGAIVIEEFERIDHPPIAALVAELVDGLPEDMHLVLSARRKPKLPISVLRVQGRVRVIDP 191 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 +L F +E D +A I GW A+QL L + + Sbjct: 192 AELRFGRRELTALLDD----GADAEALETIEQQTEGWPVAVQLYRL---WRERAGADAVV 244 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 + AS ++DYL +++ D + + + L+ +I L + ++ L ++ Sbjct: 245 PKSSGLASEVADYLAEQIFDGLAVDAQDMLIDLSIAEYCEIPLADFIRQSQDSAALLRQV 304 Query: 302 ERQ--GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 Q GL + + + HPL R R + IH A++ + + Sbjct: 305 ADQLPGLVQRSDAEDDLVYRLHPLLLGHARARLALK-PGRADLIHGRASDWYWRNARFAA 363 Query: 360 AIHHALAAGDALMLRDILLNH-AWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 AIHHA+ + D +L + + + L L +P PQ+ L+ L Sbjct: 364 AIHHAVLSHDEALLARRIEELPFLDILGTAGAGELLHILNQVPAAC-QGLPQVRLITILL 422 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIRE------DTMHAEFNALRAQVAINDGNPDEAERLA 472 + + E + A E + D + + AL+ A++ Sbjct: 423 LFRNGLFPEAEQMRAEEERLLADRADAADPQVRRLRLGNLALKLLFAVHIDGFVADHDRL 482 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL- 531 + L + + +L +G+L + + + +++ A Sbjct: 483 VAEIRALSLDAPATWAWVECLSATILQIRGDLDAAAEALLRAGKLSAAIGKPTPAASMAT 542 Query: 532 ---IQQSEILFAQGFLQTAWETQEK-AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 + G + + A EQ + + +H A + + Sbjct: 543 CQTLILGLAHGRLGHVLETVTAIRQPAAGQGTEQAVGEQALHAMAGIAAAVVDYERGYRV 602 Query: 588 EAEASARSGIEVLSSYQPQQQLQCLAM--LIQCSLARGDLDNARSQLNRLENLLGNGKYH 645 +A + R + + LA+ ++ + R D AR ++ RL Sbjct: 603 QAAEALRMALAEFGESEAWFDQYALALPIIVDVTYRRHGFDAARQEIERLRERAKRLGLR 662 Query: 646 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 705 + + +Q A A + + R + G F+ Sbjct: 663 GVLGLLST---IELFQAVRAGEPAVADAAEPADDATLSWRERDTMRLALGRLAMERGAFD 719 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A + + + R +LL + G A L +A++L+ G+++ Sbjct: 720 RAAGLAARAIAAGEAGDRLGTRIRGSILLGLARDRGGDADGADDALREAVRLSYPEGYVA 779 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 F EG ++ L++ I ++ E + Sbjct: 780 PFAQEGRSIVPLLQRAIGKGSVIEQ------------------------RLLAQVARAIE 815 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 E L+ RE +++ + G SN+ IA L ++ TIK H++ +Y KLGV+ R Sbjct: 816 REREFAAPDALSNREAEIVAHLADGASNKVIARRLGLSDNTIKFHLKKVYAKLGVSSR 873 >UniRef50_A0R2Z6 Putative serine/threonine protein kinase n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R2Z6_MYCS2 Length = 722 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 134/653 (20%), Positives = 240/653 (36%), Gaps = 19/653 (2%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI-GWYS 63 +K RP + R R L + G + LITS G GK+TL +Q + W S Sbjct: 71 TKFQRPSGRAEHIRRTRCLEMIDGPHVTH-VLITSSGGNGKSTLAAQLLDRTDGAPAWLS 129 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 L+ DN+ F + + A++ A + + A + + +L L + + Sbjct: 130 LERSDNEPGGFWTAFLIALRTALPEFGGGL--LREIVGGADVDRVLVRLADTLDAEDTAV 187 Query: 124 YLVIDDYHLITNPVIHESMRFFIRHQ-PENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 +V+DD H IT+ + + + + P +V+ SR P L A L + +L + ++ Sbjct: 188 SVVLDDLHEITDVTVIRQLSWMLERIDPATCRVVMCSRTRPALPTAQLVMTGRLAHLETE 247 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 ++F E ++ RL + ++ I GWA A+ L L+ R + + Sbjct: 248 DISFDGAETRELLLERLGVALTPEQADEIAAGTDGWAAAIYLSGLALRTGATTEE--VLQ 305 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 + + DY DE+L + FL + L L V + + L E+ Sbjct: 306 SLSVPDRRVQDYFADEILHAITPRQLAFLEGISFLDRFTADLCDAVRDATDSEEILGEL- 364 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIH 362 R +F+ R+D G W H F LR R A LP R AA+ MA EAI Sbjct: 365 RGNMFVLRLDAIGFWQRLHHTFAAVLRARAAAAGNANLPLRQRRAADWLMAHDRIPEAIE 424 Query: 363 HALAAGDALMLRDILLNHAWSLFN-HSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 + + A D ++ N + +E L LP + + +P+L L A + + Sbjct: 425 YYVRAADYDDAVRVIAAEYPRFMNISPRGAAVERWLDMLPMELVTGSPELGLAWAAVAGA 484 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 + GE L R +K + + H++ + N G + A+ + PP Sbjct: 485 RGEAGE----LHRRIEAVKPLSANDSHSQAIMDFLRGCFNFGEVEAGRECARSSFVMTPP 540 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 + + G L +++ + + + A Sbjct: 541 TGIWYPMQGAVYALLATWVDGPTPEVLHVVEDLLALESTEHQPIALAGLWALRGLVQAAH 600 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL- 600 G A ++ +A + EQ ++++P A+ +D+A A A +G EV+ Sbjct: 601 GQCGAA-DSVRRAADIRREQRIDRVPQAANTWSSTARTHRLLGDVDQAAADALAGYEVVA 659 Query: 601 ----SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 649 + L L+ +G AR + + L + Sbjct: 660 GIPPERDAVGSVVPILVELVYARRLQGRTSEARRYADEAQRRLAGITGPGRFR 712 Score = 46.0 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 39/360 (10%), Positives = 84/360 (23%), Gaps = 17/360 (4%) Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 A L + + +L + +R D + A+ A Sbjct: 345 ADLCDAVRDATDSEEILGELRGNMFVLRLDAIGFWQRLHHTFAAVLRARAAAAGNANLPL 404 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 + W + + E + ++ ++ A+ + Sbjct: 405 RQRRAADWLMAHDRIPEAI-EYYVRAADYDDAVRVIAAEYPRFMNISPRGAAVERWLDML 463 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQL-----PMHEFLVRIRAQLLWAWA-----R 585 + G + A L + P+ +A + + Sbjct: 464 PMELVTGSPELGLAWAAVAGARGEAGELHRRIEAVKPLSANDSHSQAIMDFLRGCFNFGE 523 Query: 586 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 645 ++ ARS + +Q + + G + L L Sbjct: 524 VEAGRECARSSFVMTPPTGIWYPMQGAVYALLATWVDGPTPEVLHVVEDLLALESTEHQP 583 Query: 646 SDW--ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 703 + + G + + W + AR LLG+ Sbjct: 584 IALAGLWALRGLVQAAHGQCGAADSVRRAADIRREQRIDRVPQAANTWSSTARTHRLLGD 643 Query: 704 FEPAEIVLEELNENAR----SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 759 + A E + + L+ L GR S+A+R +A + Sbjct: 644 VDQAAADALAGYEVVAGIPPERDAVGSVVPILVELVYARRLQGRTSEARRYADEAQRRLA 703 >UniRef50_A1TX00 ATP-dependent transcriptional regulator-like n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TX00_MARAV Length = 756 Score = 244 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 153/769 (19%), Positives = 265/769 (34%), Gaps = 35/769 (4%) Query: 33 RLALITSPAGYGKTTLISQWAAGKNDI-GWYSLDEGDNQQERFASYLIAAVQQATNGHCA 91 L+++PAG+GKTTL+SQW + + W +LD DN F + + +A+ + Sbjct: 2 PFVLVSAPAGFGKTTLVSQWLEQEKPVHAWLTLDHRDNAPALFWNAVASALARVNPRFAI 61 Query: 92 ICETMAQKRQYASLTSLFAQLFIELA------EWHSPLYLVIDDYHLITNPVIHESMRFF 145 T+ + + L LA + S L LV+DD+HL+ P + E +R F Sbjct: 62 RESTLLSALEPGAAVDPITMLVNRLADYSRTWQAPSRLILVLDDFHLLDQPALLEQVRRF 121 Query: 146 IRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEA 205 I P L +V +SR P + A L R Q++ +G + L F ++F R + + Sbjct: 122 IDFAPGFLRIVCISRLDPPIRTAQLLARQQMVRLGPEVLRFDLALTRKFVQAR-RADLSE 180 Query: 206 AESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDL 265 + ++ GW ALQL ALS + G LSDYL++EV ++ Sbjct: 181 EQMLQLHQRTGGWPAALQLSALS--------ENPLSHVPGPGQRALSDYLLEEVFAGLEP 232 Query: 266 ATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFG 325 + FL ++L + + + + + + L Q + W+ H L Sbjct: 233 GLQGFLQDMSLLPLFSHEVADEARNGSDAADWIAAMRERNLLFQSYGEGHYWYRLHDLLI 292 Query: 326 NFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLF 385 ++L+ + I AAE++ +G EA+ LA G ++ L Sbjct: 293 DWLQAQ--DREPERESSIRIRAAEAFRQRGLIVEALELFLAEGCYDQAEALV----PLLL 346 Query: 386 NHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIRED 445 +LS P + +P L+LLQA +YG V LA A+ ++ Sbjct: 347 QAEDLSGYRSLPSRFPDSVRMCSPALLLLQALFAFMDGQYGAVLEHLAAADRLLQSTDPS 406 Query: 446 TMHAEFNALRAQV----AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK 501 + + A G+ EAE+ L + LG + Sbjct: 407 PDTEALQFVSMLLGWPSARFAGHRAEAEQSLTQIQARLASAPAGLQHWGLYTLGTEAFME 466 Query: 502 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 561 L + L+ A AL L+ +L G + A E+ +L Sbjct: 467 ARLGPARTLLTDALAGALDSGDNPCALRCLVMLVPVLVQGGRIGDARRCYEQT-RLKLAH 525 Query: 562 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY----QPQQQLQCLAMLIQ 617 L + L L+ A + + L Sbjct: 526 GPRSKEQVCLLAYLEGLLALEHHDLEYATKRLGEAGLIADQHLTPLDQLYLAFERFRLGM 585 Query: 618 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 677 +++ +L ++G ++H + I + + G+ W + Sbjct: 586 VLRDSELWQQELTRIEQLHQVMGQLRWHHN-IPRPEVLEALARWTEGNGFPLILWAQSDP 644 Query: 678 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN-LLLLNQ 736 +P N + Q+L P L L A L+ + R L+ L Sbjct: 645 EPVVGNRFCTLNETLLKLIGQLLAA--SPVARELAALRTEAEEAGLLQLVCRLDLVSLMV 702 Query: 737 LYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLN 785 + A + L L L G + FV + L ++ Sbjct: 703 QAFGDQDPEGAVKKLDALLALWVPRGLVRPFVDADPRLDSLLARISHEG 751 >UniRef50_B8G4C3 Transcriptional activator domain protein n=2 Tax=Chloroflexus RepID=B8G4C3_CHLAD Length = 1163 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 168/827 (20%), Positives = 294/827 (35%), Gaps = 40/827 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KN 57 ++P K++ P ++R L A L+ + ++ +PAGYGKTTL++QWA Sbjct: 17 ILPLKITPPPVRREEILRRDLQALLTEVRLLPVTVVVAPAGYGKTTLLAQWADQLTHTGA 76 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYA---SLTSLFAQLFI 114 + W D D + +YLIAA+++ + Q A L Sbjct: 77 QVAWLGFDANDQEPALLLTYLIAAIRRLLPTAGEQALRLLQSLSSLKHNWPLVAGALLSD 136 Query: 115 ELAEWHSPLYLVIDDYHLITN-PVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRV 172 E SP L++DD HL++ P+ E + + +R P NL +V+ SR + LR Sbjct: 137 VQRELQSPAILMLDDVHLVSEGPITTELLGYLLRAAPPNLHIVMASRRPLTFTPLPRLRA 196 Query: 173 RDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQN 232 LLE+G+ L EA + R+ + E + + GW ++QL + + Sbjct: 197 EGGLLEVGASDLLLQRDEAVELL-ARVGVVLPDDELDLLLERTGGWMLSVQLAVRTLARQ 255 Query: 233 THSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEE 292 T + + N L +YL EVL + L+ +A+ +L+ G + Sbjct: 256 TPEQRRRYLQGLATNQHDLFEYLASEVLGMLPSHLVDRLICTALFGQAIPSLLDEALGVD 315 Query: 293 NGQMRLEEIERQGLFLQRMDDT---GEWFCYHPLFGNFLRQR-CQWELAAELPEIHRAAA 348 + LE+ GL L D F +HPL+ L R + E+H Sbjct: 316 DSAQLLEQAIDFGLPLTVETDGTSGERVFRFHPLWQRLLADRALLRFDRVFVRELHERFG 375 Query: 349 ESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLEN 408 + A+ H AA + + L +AW L + S+ L ++ LP D + Sbjct: 376 MTLARHDQIESALRHLAAAENPAAIAYALREYAWPLIDSSQRESLRNWIERLPPDVRERD 435 Query: 409 PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA 468 P+L+ + W + +R L+A+A + + A + +P E Sbjct: 436 PELLHMYGWSFFNTNR-ERALQLIAQAAEQYRLAGATDQEMRALRDMAVLLFWADSPAEF 494 Query: 469 ERLAKLALEELPPG-WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 527 R+ + +E +SR A +L+ +G +L + + E R + Sbjct: 495 ARVCRRVIEAATRINDAWSRGAALVGFMALLYSQGRFRAALRVGRWAE---RWPLSVLWQ 551 Query: 528 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 587 + +S I QG+ A A L + + + L+ ++ L+ + + Sbjct: 552 WLLAVLRSSIYVQQGYPAEALTAIRAALDLPRIDRND--MLRQSLLLLQGLALYQQGQSE 609 Query: 588 EAEASARSGIEVLSSYQPQQQLQC--LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 645 A + L+ Y P L + +L + D + L R + Sbjct: 610 VALDQVQECYFRLNDYVPGSVLTGNAVLILALLLIEHERFDEVATYLQRARQIASQLD-D 668 Query: 646 SDWISNANKVRVIYWQMTGDKAAAANWLR--------HTAKPEFANNHFLQGQWRNIARA 697 V + + +AAA + A LQ + A Sbjct: 669 RLLGMRVRVVEIYAALRSQSPSAAAQAVAFWHKLREYSDPNTPVARESDLQSFQVHDAWM 728 Query: 698 QILL-------GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA-QR 749 Q LL GE E A + + L E R L L +Q +A Sbjct: 729 QTLLLIVMGEGGETEQALAMADSLLEFMVRRRDGLFQAVIHLYRAYLMFQQQPHVEAVAD 788 Query: 750 VLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQ 796 + A + +R G S + M +R +Q+ + Sbjct: 789 DIRIACTICDRAGVESLPFLPRPVMLWAIRMALQIGLSSRAMIAALR 835 >UniRef50_A6V205 Probable transcriptional regulator n=7 Tax=Bacteria RepID=A6V205_PSEA7 Length = 827 Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 189/904 (20%), Positives = 315/904 (34%), Gaps = 106/904 (11%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND---IGWYSLDE 66 P + R RL L RL L+ +PAG GKT L+ + A + W +L Sbjct: 12 PRLPPQHLPRPRLHQPLLR-GECRLRLLCAPAGSGKTVLLGECARQAPPGVQVAWLALGG 70 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 F L A+ +G A + L+L+ Sbjct: 71 EALDPATFRRRLAGALGLPEDGDEAQLCRRLRNASA--------------------LWLL 110 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +DDY +P + + + ++ + SR PQ + L + +L E+ + QLAF Sbjct: 111 LDDYPRCPDPALDACLDRLLSAASPRVSWWLASRRRPQCNLTRLLLEGELREVDAGQLAF 170 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 E +A + + + GW AL+L L + Sbjct: 171 DLTEVVDLLRLH-GRRADADAAVALLERSGGWCAALRLGLLVGEEQAGPL---------- 219 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 L +YL E+LD++ L A L + L R+ L+E+ +G Sbjct: 220 ----LQEYLQHELLDDLSLPLADAARALAWLPHVGSGLFRRLFESLP--QGLDELLARGF 273 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALA 366 LQ +R+ + HR A + G EA+ ALA Sbjct: 274 PLQTDGLQRYR------LPAAIREVWRTSPHRPQAAFHRCACHWFAEHGETREAVDQALA 327 Query: 367 AGDALMLRDILLNHAWSLFNHSE-LSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRY 425 A + +L H + L+ LP L P+L++L AW + R Sbjct: 328 ADEPETAAALLQKLTEEQLLHGHNIGLVLALRDELPAALLASTPRLLILNAWALLYAGRL 387 Query: 426 GEVNTL---LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG 482 E LAR + R+ ++ A++ L + G A +L + ALE LP Sbjct: 388 AEAEACIGQLARFQPMPSAARQRSLLAQWQGLYGILLHCRGERGAAGQL-REALEHLPED 446 Query: 483 WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 542 + ++ S L ++ +G + ++ + + ++AR+HD + + +++ L ++G Sbjct: 447 AWSQGLICHSALMQLAMIEGRMDQARLVGRDALRLAREHDSLIFEALIELDRAQWLESRG 506 Query: 543 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 602 L A ++A + + + + PM + RA+L R EA R G+E + Sbjct: 507 ELVRAESVLDRAQRYLEDLGQQGSPMLGRITLRRARLCLQQGRDGEAGQWYRQGLEQARA 566 Query: 603 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW-ISNANKVRVIYWQ 661 + L L +GDLD A ++L +E L+ V Sbjct: 567 NRDPWVLYGYLGLALLEAGQGDLDAAFNRLLEVERLMQQRHVPDSLYRGALLLVSAALTL 626 Query: 662 MTGDKAAAANWL---------RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 712 G A L + +A A++ G+ AE L Sbjct: 627 QQGRPHQAREILLRVRAYFQPGRARLSPPSEPELEARVEHQLALAELYGGDSAAAEARLR 686 Query: 713 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 772 L + + L + + + + AG+ + AQ+ L L+LA R G + Sbjct: 687 GLLAVLEAQGRQTLLCEVRMAIAECQFLAGQLTQAQQSLRSGLELAGRLGLQLPQRRLRQ 746 Query: 773 AMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR 832 Q L + Sbjct: 747 RQPQLFAALPGEDEE--------------------------------------------G 762 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 SPL+ RE VLGLI G SN++I +L ++ T+KTH R + KLGVA R AV A+ Sbjct: 763 LSPLSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKA 822 Query: 893 LLKM 896 L + Sbjct: 823 LGLL 826 >UniRef50_Q143R5 MalT n=1 Tax=Burkholderia xenovorans LB400 RepID=Q143R5_BURXL Length = 695 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 118/677 (17%), Positives = 237/677 (35%), Gaps = 25/677 (3%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLI----SQWAAGKNDIGW 61 +LS P V R LA L + RL ++T+P GYGKT L+ + W Sbjct: 10 RLSPPDFAFEYVP-TRALASLRSRSLPRLTVVTAPPGYGKTVLLSTIYRWLCSTGERCLW 68 Query: 62 YSLDEGDNQQERFASYLIAAVQQAT----NGHCAICETMAQKRQYASLTSLFAQLFIELA 117 +LDE + + L A+ + + +A + +L Sbjct: 69 LTLDERERDVRSVFALLRQAMAGSGQMGDEADIQLASAIADPVDMIDPGHAMEVVVSDLR 128 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 + ID+ + +P+I + H+ N+ LVV S + +++ L Sbjct: 129 RLPGRTVVFIDNLDVCVDPMIAVFVERLTFHRAPNVHLVVSSVRNLPIDFVRMKLEVDGL 188 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIAL--------SA 229 +G++QL+F E +Q F + ++ I GW A++L + + Sbjct: 189 MLGTEQLSFDRNETRQLFAMSGLARLDDGIILDIHAHTEGWPAAVRLAQVLFSEQRQFAQ 248 Query: 230 RQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVT 289 ++ S + R + +S L + VL +D A FL++ A++R + L +T Sbjct: 249 STSSGSFTSTPLRDFNGDQKDISRVLTERVLAIIDPAHVRFLMEIALVREFSADLAEFIT 308 Query: 290 GEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAA 348 G + + L+++ ++ L + + WF H L L Q + L E+ + AA Sbjct: 309 GNPSAREWLDDLLQRNLLIFAVGGGRRWFRLHTLLREHLLQESRERILPVRRTEVLKRAA 368 Query: 349 ESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNH-SELSLLEESLKALPWDSLLE 407 + + A+ AL A D +++ A + ++S+L E + L Sbjct: 369 RWYTDRKDYVSALGSALEAPDVQQAENLIGRIARHVAADCGQMSILVEWSETLVDLGGHL 428 Query: 408 NPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKD----IREDTMHAEFNALRAQVAINDG 463 Q W + +Y + L + I A+ + LR +A++ Sbjct: 429 PVQAQGWYVWALCHLMQYEKAKWALDILDRRISGSPPFPAAAGEVADLSFLRIVLAVSTD 488 Query: 464 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 523 D A A + L+ +V +G+L+ + E + Sbjct: 489 ALDVAHAQALIWLDNAEHYDPLHVGTIAAVAAMAALDRGDLSEGERHLDFAEGAIERSHS 548 Query: 524 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 583 W I ++ + ++ A + + E + + + A++L Sbjct: 549 MFVRAWIGILRAILELSRARPDVADRILSNVRVRVAAELGENSSVITIIDSVHARVLTDL 608 Query: 584 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK 643 A ++ ++ + + + DLD+A + L+ + Sbjct: 609 GLFSAAYVPMMRSMQTVNHHGVPVTAELGLGACVAMRSGQDLDDASNT--SLDEIARRYA 666 Query: 644 YHSDWISNANKVRVIYW 660 I +A ++R Sbjct: 667 PRIMTILSAQRIRRRLH 683 >UniRef50_A5V421 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V421_SPHWW Length = 890 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 154/916 (16%), Positives = 293/916 (31%), Gaps = 62/916 (6%) Query: 3 IPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI--- 59 + S+L +L V R+RLLA L RL I +P G GKTT++ Q A Sbjct: 11 LRSRLRPRPQLVPLVERDRLLAWLDADVPSRLVWIGAPPGAGKTTMMEQAYARVGSCGGF 70 Query: 60 -GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W SL + + F++ LI AV + A + Sbjct: 71 RAWLSLTDQEATTAAFSAALIHAVALSARDEPAEPGRDLPEAFSQ-------------LC 117 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 ++L +DD+ +R + P +T+VV SR L A L +R ++ Sbjct: 118 GGRHIWLFLDDWDRAECAETEAVLRLILAEYPGGITVVVGSRTASPLTSAALLMRGGIIR 177 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 L FT E + A + I + GW +QL L Q Sbjct: 178 FDFDNLCFTRGEIA----GCAGADPSAGDLDAIWTETHGWPALVQLARLGMMQRRSFGGS 233 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + ++DY+ +E+L + R ++ A+ ++ L+ + + + Sbjct: 234 GDDAFPD---AMIADYVSEEILGALVSPERQAMICGALFDELSADLLDIILERSDSMESI 290 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 + + R+ L + + W+ P+ +R+R A A + + G Sbjct: 291 DALRRRHL-IAEAGSSANWYRMMPVLAAHVRRRRFAPSRAIPVRQIEAVCDFLVRFGRHD 349 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 +A+ L AG M + A L + + PQL L +L Sbjct: 350 DAVRFVLRAGAPEMAAALFERGAGYLLTMRWGFETIRLFREFDIPGIERFPQLALALIYL 409 Query: 419 MQSQHRYGEVNTLLARAE---HEIKDIREDTMHAEFNALRAQVAINDGN--PDEAERLAK 473 + R R + + + + F+ + + + + P + Sbjct: 410 DLQEERVARARAAFERLRGEDAALARVDDANLRLAFSVVEGLLCLVEDREMPVRVTAAME 469 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 AL+E G R A VL G+ L ++ D + + + + Sbjct: 470 TALDENSIGPVALR-SALCVLVSHYLDTGDYAEGLLRASVAL-LSAGADAPYVSDYLDLC 527 Query: 534 QSEILFAQGFLQTAWETQEKAFQL--INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 S A G + A + + E+ + + + AQ+ + ++ A Sbjct: 528 LSLANGALGNMAEAEAHARSVERRNAVGRGFPEEAMVTAYASFLLAQIRYETGDIEGAWE 587 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD--LDNARSQLNRLENLLGNGKYHSDWI 649 +R L A SL R ++ A L+ + Sbjct: 588 ISRDSAPALPERHGWLPAYEAATPTVASLLRRKEGIEPALHFLHD-QQGAARRNGFDRLE 646 Query: 650 SNANKVRVIYWQMTGDKAAAANWLRH--------TAKPEFANNHFLQGQWRNIARAQILL 701 A + + G A A+ + + G + R + Sbjct: 647 LVATASEMHQLALAGRIEEARKIAEQPTVRRILSGAEIDSRASRLAPGLFAGAIRLALCG 706 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 G+ A+ +L L R + L L +G Sbjct: 707 GDLARAKQMLGTLKSFDRHGANERLQIPLMTLEASLMHLSG----------------AAE 750 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 ++ G + + R + L +IL +++ + A + + Sbjct: 751 PCVAICGDIGRRLTRSGRWTYLADEPRALVTPLLAQILPKLDAVASGQTAFVVQLLEGQC 810 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 L+ RE +VL ++ GYS +++A +L + +T+K + + L+ KL Sbjct: 811 KGVARKISHGGPH-LSPREREVLEMLADGYSAKEMANQLGLMESTLKGYRKALFSKLNAH 869 Query: 882 HRQDAVQHAQQLLKMM 897 R A++ A++L + Sbjct: 870 TRSRALRAARELNLIE 885 >UniRef50_A5V4I4 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V4I4_SPHWW Length = 904 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 143/904 (15%), Positives = 287/904 (31%), Gaps = 58/904 (6%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW----AAGK 56 ++ + + P+ + R +A + + L + SP+G+GK+TL++Q + Sbjct: 31 IVSRYRFTPPIPQRSFIPRA--IASRISRSPYPLTFLASPSGFGKSTLMAQAFDLARSEG 88 Query: 57 NDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL 116 W +L E F+ YL +++ Sbjct: 89 ESARWLNLYHRAAGAEGFSHYLCLSLKDDGEAQDIAPGAGPFGIDD------LLAEVDAT 142 Query: 117 AEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQL 176 + L +D+ + + +H + LVV SR P L + Sbjct: 143 CRRDGSVSLYLDEVAPGDLDTVLGLSQMIGKHFGDKAKLVVSSRVAPPRLAGVLGDGGIM 202 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 +LAF+ E + F + + + + GW LIA HS Sbjct: 203 Y--TPAELAFSPAEVAELF----DGGLPERDVAALVATTGGWPA---LIASVRHGTGHSP 253 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM 296 + G ++D++ D + L + + + + Sbjct: 254 ADHSLGTGGEAGDMIADFVRDLMDVAPSSRDIEVLAAAFAFGNATAPIFEH-DDFASAGE 312 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 + + R GL R + T + H + + + + +IHR+ + S +A G Sbjct: 313 IVTRLARDGLVKVRSEGTRLVYEPHAAVRFAVDRLGRRSSQKRMLDIHRSLSTSLVASGD 372 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 AI HAL GD +L D++ L + + +++ A+P L P ++L + Sbjct: 373 RVGAIRHALETGDLDLLCDLIEAGGGWLLILQWGAPILDAVNAIPIGRLGGRPAMLLTKV 432 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG-NPDEAERLAKLA 475 +++ GE LL +++ A + I+ E + A Sbjct: 433 YVLMQARAIGEARQLLDEISTDLEPASFPDDEAFHSFQIGYGLIDGVLRSYEMRPIDFPA 492 Query: 476 LEELPPGWFY-----SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 LE L + + ++ G G L + A ++ + + Sbjct: 493 LERLRDHGPADIRNIADAMILNLKGGYQLRDGLLVEAEATGREATLKCQAAKATFVEAYV 552 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 + G + A + A+L + + A Sbjct: 553 QLWLGHAHLQSGNTRDASRRFAAVLDIAENCFGADSNQMIAAKVFLAELEFERGEAERAY 612 Query: 591 ASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLA-RGDLDNARSQLNRLENLLGNGKYHSDW 648 A + + + P L+ + + R + A S L+ + + N Sbjct: 613 AIIEAVFDRIEELDPWYEMLRPFYRIASIRVQNREGTERAISFLDTALDRMENRNLGLLS 672 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 + + Q D A + E + FL R + G+ A Sbjct: 673 RYLRSLRAEMLVQSERDIQAIERGVGELQHVEPIESAFLN------VRVGLKRGDVPAAL 726 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV 768 ++ L + + +L + G A ++ +A +LA ++ HF Sbjct: 727 AGVDALLDQPAVRECARRMITVTVLKAACHAARGEVRAAGDLVAEAQRLATQSDLRGHFE 786 Query: 769 IEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP 828 E + + L P + R + D+ + RL Sbjct: 787 HEVASSEGAVGGAPLLRPDPGRQAMAR-------LPAPRGELIEVDDRSLPRLG------ 833 Query: 829 ELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 RE +VL I G S+++IA + ++ T+ + ++LY+K+GV R A+ Sbjct: 834 ---------PREREVLDCIVEGLSSKEIAWRMSLSVGTVLGYRKSLYRKIGVNCRSAAIS 884 Query: 889 HAQQ 892 +A+Q Sbjct: 885 YARQ 888 >UniRef50_UPI00006A2BBB UPI00006A2BBB related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A2BBB Length = 874 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 167/863 (19%), Positives = 292/863 (33%), Gaps = 51/863 (5%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA----AGKNDIGW 61 K++ P V+R RL +F ++ +PAG+GKT+L++QW W Sbjct: 41 KVTPPRTPRDLVLRTRLAPTADALRDFSCFVVQAPAGFGKTSLLAQWRKEFQQTGVAAAW 100 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 S D R ++ AV+ A+ MA + L EL + Sbjct: 101 VSAQAKD-DPHRLVQSMVLAVRMASGQSG--FGRMAFEFDGTDPLEHVTVLLAELVQSAQ 157 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 + L++D+ + + + +R P NL V+ +R QL I +L Q + +GS Sbjct: 158 DVVLIVDEADKLPEASRKTLI-YLLRQAPPNLRPVIAARPDWQLDIDDLVAYGQCMVLGS 216 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 L F E Q R + ++ ++RI GW +QL A + ++ Sbjct: 217 PLLRFDLGETLQLVQARFGAQVDRTLAARIHALTEGWPLGIQLALTIAARGADASAGVTG 276 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 L LV +L N++ R FL++ AIL ++ L V G+ + RL + Sbjct: 277 MALLGG--ELQGQLVKLLLANMETEDRDFLVRIAILDHLHPDLCRVVAGDTHALERLARL 334 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 + + + G W H L + LR A E H A + QGF +A Sbjct: 335 SSET-PVFASAEGGTWLRMHALVRDALRLDFNDLSARRQSEAHARATQWLANQGFVDDAA 393 Query: 362 HHALAAGDALMLRDILLN-HAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 HALAAG + ++ SL + + E L+ +P D L P+L+L AW + Sbjct: 394 RHALAAGQQQVAYNLAERSLYESLMQRGRRAAVLEWLEHMPADELDRRPRLLLAVAWTLA 453 Query: 421 SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP 480 S R+ E +AR + D M E + + A+ +PD L ++ +P Sbjct: 454 SSERHAEAGRFVARILAQPDVG--DAMRCECALILSGAAVFADDPDRCVDLHAPWIKVVP 511 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE--QMARQHDVWHYALWSLIQQSEIL 538 V + + GE ++ L+QQ + ++ H + WS + Sbjct: 512 LTDPVLLQVHANRVAYGALLAGEPAQARLLLQQLAVGERSQPHSHGYIGRWSALIIGLSC 571 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 +G +Q A + + A + + L + A W +A ++ Sbjct: 572 VWEGQMQQAKQVLQPALASAEAELGRRNRFSCILAALLATAAWEGDSRADAALLLADRLD 631 Query: 599 VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 658 +L L A + +L + +G + + +V Sbjct: 632 ILEHSGLPDALMLAYRTAARVAAAEGAEYRALELLGALDAVGATRQLPRLRLVSLADQVR 691 Query: 659 YWQMTGDK-------AAAANWLRHTAKPEFANNHFLQGQWRNIARAQ--------ILLGE 703 + A + P+ A+ RN + + + Sbjct: 692 MHARSYRAQTCRELCAQIEAQIEAALGPDPAHPLRGPIWRRNAQALRDQALAFAALAARD 751 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 + A L + AR R+ L L + G AQ ++ +A+ LA G Sbjct: 752 WHAALAPLARAQKYARRTRMGRLQIEMLGLRALALDRCG--EAAQHLVHEAMDLAATYGL 809 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 + +A + L +T+ Sbjct: 810 RRVLIDAHPELAAWVGALSGNDTVHPAASPTGPTGPTPTGPPVAAAAVAAPLRR------ 863 Query: 824 HPEVPELIRTSPLTQREWQVLGL 846 LT +E +VL L Sbjct: 864 ------------LTPKEREVLTL 874 >UniRef50_A5UYI0 Transcriptional activator domain n=2 Tax=Roseiflexus RepID=A5UYI0_ROSS1 Length = 1204 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 166/842 (19%), Positives = 284/842 (33%), Gaps = 26/842 (3%) Query: 13 LDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIGWYSLDEGD 68 + ++R L A L+ L ++T+PAGYGKTTL++QWA + W +LD GD Sbjct: 90 REGVLLRPDLQALLAEVRLHPLTVVTAPAGYGKTTLLAQWAQELGRTGAPVSWLTLDVGD 149 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLF---IELAEWHSPLYL 125 F +YLI A Q A + + S +L Sbjct: 150 RDPALFLAYLIRAFQMAFPALGRDASRVLSSAASLERDWPLVAGALCSDLQRQVLSAAFL 209 Query: 126 VIDDYHL-ITNPVIHESMRFFIRHQPENLTLVVLSRNLPQ-LGIANLRVRDQLLEIGSQQ 183 +DD H I + VI + + + +R P L +VV SR ++ LR +L+E+ Sbjct: 210 FLDDLHQVIDSAVIGQILGYLLRAAPPTLHVVVASRREVHIPPLSRLRTEGRLVEVRQAD 269 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L T ++A+Q + E + + GWA +LQL A + + + Sbjct: 270 LHLTPEQARQLLT-IQGVALSDEELTTLLARTEGWALSLQLAARALAELPAERRSAFVEA 328 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIER 303 G + L YL DEVL ++ FL +A+ + L+T V ++ L + Sbjct: 329 LGGGSEQLLSYLADEVLADLPSDVLEFLRLAALPPHFDADLLTAVLLRDDVPYLLRRVRT 388 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQGFPSEAIH 362 GL L +DD GE +HPL+ L + + E L HR + +G EA+ Sbjct: 389 LGLPLTPLDDQGERLRFHPLWRELLLRGIDEFVDDETLAAFHRRFGRQFEMRGELEEALE 448 Query: 363 HALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQ 422 H AG L LL AW L N + ++ +P + NP+L+ + + Sbjct: 449 HYAHAGSVDNLERALLERAWPLLNSPRRDTVRRWIEQIPVERRDANPELLYMWGYSQIVS 508 Query: 423 HRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PP 481 ++ A + + A + P + + A+ Sbjct: 509 -DPSRAAQIIEHAAELFRRSGAHARELRAYSDLATLLFWQARPADFAAVCVRAIRAANLA 567 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 +SR A + + +L +G L+ +L + + + + + I Sbjct: 568 RDAWSRGAALTCVAAMLAIRGRLSAALRVARHAAAHPL---NPAWHWLLAMIVTSIHNQL 624 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE-VL 600 G A ++A Q ++ M + L+R RA L+ + EA A +L Sbjct: 625 GRPDDALAVVDEALQSSQIDSNDR--MRQNLLRQRAMALYQIGQPAEAITLALDVHRYLL 682 Query: 601 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 Y+ A L +G D + + + + + ++ + + Sbjct: 683 DYYRDGTAGVSAAQLALLLSLQGRFDESAFYIAQARAAFHDLGALAPL-ASLQVIELYNM 741 Query: 661 QMTGDKAAAANWLRH--TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA 718 + G A AA E +A GE A +L+ + Sbjct: 742 RGRGQAARAAAAASAFVRRLDEVEGVAPDLRLRLLLAIVLGEAGEHRQALDLLQTTVQQM 801 Query: 719 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI----SHFVIEGEAM 774 + L L L G + L +A + Sbjct: 802 QHRGYRLFLASACLYGAALAGVCGEGALRDAWLRTGWTIAADDRSRFLPMMPVSALKDVA 861 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 LR I + + + H E+ Q + V RLL Sbjct: 862 IAALRTGIAPDAVGRILPHHVGDEAVELLQDALNDPDPSVRAHVVRLLGEVGAAAAYPAL 921 Query: 835 PL 836 L Sbjct: 922 RL 923 >UniRef50_B5HRX4 Transcriptional regulator n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HRX4_9ACTO Length = 856 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 156/680 (22%), Positives = 261/680 (38%), Gaps = 29/680 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA---GKND 58 L+ K P +V RERL +L A + RL ++ +PAG+GKT+L+S WAA K Sbjct: 122 LLAVKQVIPPARAGSVPRERLQRQLRLA-DTRLTVVVAPAGWGKTSLLSGWAADPEEKRR 180 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 I W SLD+GD++ RF SY++ A+ A + A + + L ELA Sbjct: 181 IAWVSLDDGDDEPVRFWSYVLTALHNAGDAISAGPLQALDATGVSPVDLALPMLLNELAA 240 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 P LV+DDYHL+ + IHE++ + + + P +L +V+ SR P L IA LR R L E Sbjct: 241 TTVPHVLVLDDYHLLADQRIHEAVEYLVTYLPASLRIVIASRTDPPLPIARLRARGDLTE 300 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 + + QL F+ +EA ++ ++ + + GW + Q A + Sbjct: 301 LRAAQLRFSPEEAAALVAAVSGHDLDGVVATAVWERTEGW--------AAGLQLAALALR 352 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 + + HL DY EVL + R L+++A L ++ L L Sbjct: 353 ADPTKGHADDRHLLDYFTAEVLPGLAPRHRDLLVRAAPLERLSGPLCDAALQVTGSAEVL 412 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 ++ R LF+ +DD W+ H L L + + E+ AA + + Sbjct: 413 SDLVRADLFVAALDDEQHWYRCHHLLREVLGREATADP----REVLGHAAAWFADENRID 468 Query: 359 EAIHHALAAGDALMLRDILLNHAWSL-FNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 +A+HH L AG +++L A S F + + L ++ P+L A+ Sbjct: 469 DAVHHLLRAGRDDEAAELMLRTAESWFFPRGTAATYLRFGERLSSRTVG--PELAYSLAF 526 Query: 418 LMQSQHRYGEVNTLLARAEHEIKD----IREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 VN L E + +RA ++D ++ LA+ Sbjct: 527 AAALCGDQDRVNRWLDVCEAGSTPDTVLPGWHSFRGAVLTVRAGFGMSDAEAAQSVALAR 586 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI- 532 ALE G + + LG VL G + L+ Q R+ + + ++ Sbjct: 587 QALELETAGGATAHPHVPATLGGVLARDGRFDEAATLLFDVWQQRRRGSWPLWTVMAVAG 646 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINE----QHLEQLPMHEFLVRIRAQLLWAWARLDE 588 + L G + +A + P L + + A ++ Sbjct: 647 MLAVSLVEAGRGEDCDRVLREAGPTADAVEGDGREASTPGLAALRIAAGRRSYLNADVEA 706 Query: 589 AEASARSGIEVLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 647 A R + + + P L L LA GD AR+ L R ++ + Sbjct: 707 AAVRLRRAVTLAELHPRPTTLFLGLLYLADAELACGDRPAARAALARAREVVEEEPVSAF 766 Query: 648 WISNANKVRVIYWQMTGDKA 667 + ++ A Sbjct: 767 AKRRLEESEARLGRVGARTA 786 Score = 95.7 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 69/510 (13%), Positives = 140/510 (27%), Gaps = 24/510 (4%) Query: 399 ALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQV 458 LL+ +L + + L + + T AE + + Sbjct: 359 HADDRHLLDYFTAEVLPGLAPRHRDLLVRAAPLERLSGPLCDAALQVTGSAEVLSDLVRA 418 Query: 459 AIN---DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 515 + + R L E L + + ++ + + Sbjct: 419 DLFVAALDDEQHWYRCHHLLREVLGREATADPREVLGHAAAWFADENRIDDAVHHLLRAG 478 Query: 516 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 575 + ++ S TA +L + +L + + Sbjct: 479 RDDEAAELMLRTAESWFF---------PRGTAATYLRFGERLSSRTVGPEL---AYSLAF 526 Query: 576 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 635 A L R++ +G + + + ++ D + A+S Sbjct: 527 AAALCGDQDRVNRWLDVCEAGSTPDTVLPGWHSFRGAVLTVRAGFGMSDAEAAQSVALAR 586 Query: 636 ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 695 + L + + G AA L + + L Sbjct: 587 QALELETAGGATAHPHVPATLGGVLARDGRFDEAATLLFDVWQQRRRGSWPLWTVMAVAG 646 Query: 696 RAQILL---GEFEPAEIVLEELNENARSL------RLMSDLNRNLLLLNQLYWQAGRKSD 746 + L G E + VL E A ++ L + + + Sbjct: 647 MLAVSLVEAGRGEDCDRVLREAGPTADAVEGDGREASTPGLAALRIAAGRRSYLNADVEA 706 Query: 747 AQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHH 806 A L A+ LA + + +A + + E Sbjct: 707 AAVRLRRAVTLAELHPRPTTLFLGLLYLADAELACGDRPAARAALARAREVVEEEPVSAF 766 Query: 807 RHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATT 866 + E + R+ V + LT RE +L + + +I + ++ T Sbjct: 767 AKRRLEESEARLGRVGARTAVRSGVLAEELTDRELSILRALQGSATQREIGAAMFLSINT 826 Query: 867 IKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 +K + ++LY+KLGVA RQDAV A++L + Sbjct: 827 VKAYNKSLYRKLGVASRQDAVAAARELGMI 856 >UniRef50_A8LZ74 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=4 Tax=Micromonosporaceae RepID=A8LZ74_SALAI Length = 953 Score = 232 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 201/953 (21%), Positives = 312/953 (32%), Gaps = 122/953 (12%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN---- 57 L+ S+L+ V+R RLL +L + L+ +PAG+GKTTL++ W G Sbjct: 31 LLASRLTPGPLPGPVVLRPRLLRRLDEGTAVPVTLVAAPAGWGKTTLLTSWYQGAAGEPG 90 Query: 58 ----------------------------------------DIGWYSLDEGDNQQERFASY 77 D+GW S++ GD ER SY Sbjct: 91 GDPVRGGPVTGGAGGNRSPTPVTPAGESGPPEYGPGQSRPDLGWVSVEAGD-DGERLWSY 149 Query: 78 LIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPV 137 L AA++ A + L +A P+ LV+DD H IT+P Sbjct: 150 LTAALRAAVGSPVPDRPPRPDQ---------LEVLAATIAARERPVLLVVDDLHRITDPE 200 Query: 138 IHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDC 197 + + F +RH + L LV +R+ L + R+ +L E+G LAFT E Sbjct: 201 VVTGLEFLLRHSEQRLRLVAGARSGVPLAVHRWRLAGELTEVGPDDLAFTGDEIADLLTA 260 Query: 198 RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVD 257 + + A R+ + GW AL+ + A + N ++ YL + Sbjct: 261 H-GTALPADGVRRLRERTGGWPAALRFAVRALPGQPDPARWVGQ--LDGNQPDVAGYLRE 317 Query: 258 EVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEW 317 EVL +D R L +A+ ++ L +TG + RL ++ G L+ D W Sbjct: 318 EVLGGLDPNDRELLRTTAVTDAVCAGLADALTGRPDTGTRLADLAGVGGVLRHDDGRPPW 377 Query: 318 FCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDIL 377 + PL + LR A ++ E+HR AA + G P++ + HAL GD ++ Sbjct: 378 YRCRPLLTDLLRGELDRLPAEDVRELHRRAAGWYADNGRPADGLRHALVGGDWAGATELF 437 Query: 378 LNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEH 437 L L + P +++ +P+L L A L A Sbjct: 438 LATWPELAPYGGAGP-APPPTPPPAETVARDPELALACAAERAYAGDVSAAEGYLRSAAV 496 Query: 438 EIKDIREDTMHAEFNALRAQVAINDGNPDEAER----------------------LAKLA 475 D F L A V + + A++ Sbjct: 497 AAADQLPVPRRERFARLAAAVELAVVRWSDDVPAVRAAAARLLATHAAAASMSGGRAEVR 556 Query: 476 LEELPPG---------WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 526 L +PP VA + LG G+L + ++ MAR Sbjct: 557 LPAVPPAVEPRGAAMEDADGWAVAGTALGLADVAVGDLGSAERQLEMAFLMARAAGWART 616 Query: 527 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 586 L + + + +G L+ A A L Q + + + Sbjct: 617 ELAGASRVALLRAVRGDLRGAEALARSALALPPSQGWSCQIDCGYAYLALGVVALHRDQP 676 Query: 587 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 646 +EA A+ + + Q GDL L LG + Sbjct: 677 EEAAANLALAEHATAESAAGAVVALC--RAQLLRDAGDLAGGHRLLVAARERLGGHEGEL 734 Query: 647 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 706 D GD A L ARA++ G+ Sbjct: 735 D--RWLRAAEADLRGARGDLDTARELLAGDGPE----------LAVGRARAELRAGDDRT 782 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 AE VL + + +L L + G A R L AL LA GF Sbjct: 783 AEAVLPNWQVAGAADWPLPVRVEAAVLDMVLARRVGDNRRAHRTLELALDLAGPQGFRRQ 842 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 F + L + T R E + A E Sbjct: 843 FTRADPDVRDLLAAHLDTGTAHWPTLSDLVRGADEPVEAAGPAPAALAEPL--------- 893 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 T+RE +L + S SN +IA EL ++ T+KTH+RN+Y+KL Sbjct: 894 ----------TERELTILRYLQSILSNVEIAAELSLSINTVKTHVRNIYRKLD 936 >UniRef50_A5V680 Regulatory protein, LuxR n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V680_SPHWW Length = 837 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 140/881 (15%), Positives = 285/881 (32%), Gaps = 76/881 (8%) Query: 23 LAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAV 82 L + L+ + AGY KT + G+ +L Sbjct: 10 HDWLRDPLAPPILLVEAGAGYDKTRWCETLRDRALEAGFTTL------------------ 51 Query: 83 QQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESM 142 ++ S +L PL LVID + + E++ Sbjct: 52 ---------------FIEPASTSASQLGELVDAAERGAGPLLLVIDGFDRAPDRRFGEAI 96 Query: 143 RFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSP 202 Q + + SRN + + + L F + F+ Sbjct: 97 ADISARQRPGDRIAIASRNRIAIRFRRRWISGGAARVNEAALGFGRDQTAALFE----GA 152 Query: 203 IEAAESSRICDDVSGWATALQLI-ALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLD 261 + + GW TA++ + R+ RL ++ Y+ DE+L Sbjct: 153 LPDNAVDMVLAWSEGWPTAVEAVHLGWQRKRRTHDANDMARLIDEIWPDVASYIEDEILS 212 Query: 262 NVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYH 321 ++ R ++++A L + + L ++TG+ + L+++ + L + + + H Sbjct: 213 DLAAPQRDLMIRTAFLETFDGDLAHKLTGDASTWDVLDQLVDRH-VLAADEGSDPSYRCH 271 Query: 322 PLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHA 381 PL L + E + R AA+ + + AI A AGD + L+ Sbjct: 272 PLVRRRLESDLRKRG-GEFRHLARKAAQIFWQRQDVQRAITCADLAGDGALAARWALSLD 330 Query: 382 WSLFNHSEL-SLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHE-- 438 ++F S L E ++ +P D L P+L L A+L R + +L Sbjct: 331 TAMFGVSRGGRELREVMQHVPVDILETKPRLALAHAFLAAKSGRIDVADRILQHVRTTEL 390 Query: 439 -IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK-LALEELPPGWFYSRIVATSVLGE 496 + + + + +A+ DG LA +E + G R +V Sbjct: 391 NGAAGSDRLLARDTAIVEVAIAMYDGRGFGGPALAALDMIEAVSYGDEGIRGFVENVRCA 450 Query: 497 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 556 + + +LA + + + + + I ++ + A Q Sbjct: 451 IAFDASDFPEALARYRNALHFYTCQNATNGLGYIHLHSGRIYAEMLNIEACARAYDHARQ 510 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML- 615 L EQ + + ++A+L + R +EA+ + + L Sbjct: 511 LFLEQRPQDEQSLRLIKPLQARLAYDQGRFEEAQRLSDGFAAEVGQGGYYWDALYLGFRT 570 Query: 616 -IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 674 + + R +AR L+ + + + + A+ L Sbjct: 571 AAKLAARRHGDADARRTLDGAIEFARLNRIGHLEHLLLLER----AALAPESDDVAHLLD 626 Query: 675 HTAKPEFANNHFLQGQWRNIARAQ--ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 732 + + R + RA+ + G+ + A L + L+ Sbjct: 627 RGPLHAASPLPWRIRDLRAVVRARRDAMAGDLDGALARLFAQLDECHVQGRQRSRIDLLI 686 Query: 733 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 792 + L Q R+ A +L +A +LA + ++ F+ G Sbjct: 687 AASLLLDQGQRRERAIDMLHEATRLARKGHIVAPFIENG-------------------RD 727 Query: 793 HRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYS 852 A L + ++ FV ++L + + L QRE +L + G S Sbjct: 728 ALALLSLLASGAVDGNGAGIGNDPFVSQVLALQDEAPSGPATLLNQRERDILRHLAEGMS 787 Query: 853 NEQIAGELEVAATTIKTHIRNLYQKLGVA----HRQDAVQH 889 N+ IA +L ++ T++ +++ +Y+K G+ +R+ Sbjct: 788 NKLIARQLNISPETVRYYLKGIYEKYGLHGGYANRRALAHF 828 >UniRef50_B8DMH8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DMH8_DESVM Length = 839 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 159/892 (17%), Positives = 289/892 (32%), Gaps = 72/892 (8%) Query: 7 LSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIG--WYSL 64 ++RP R D RL A+L A N R I +P+GYGKTT+ + + G W Sbjct: 1 MARPRRTDIPYFSPRLKARLHEALNMRSVFIEAPSGYGKTTIAQNYLRERLPEGATWVRH 60 Query: 65 DEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLY 124 + + +Q+ ++ + ++ + +P + Sbjct: 61 VCVEESPQAAWRRFCQTMQKVDAHTGRTMQSYGLPDEDSAGH---LASLLRELPCSTPFW 117 Query: 125 LVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQL 184 LV+DD+H + V + F+ H+ L L+V++R + + + +L + + L Sbjct: 118 LVLDDFHHLAPHVPAPIWKAFLEHEAAQLRLIVVTRPVATRILPYEKAG--ILRLNADDL 175 Query: 185 AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 T E++++ R + A++ + GW A L + A Sbjct: 176 RLTEAESREYAT-RAGIALNEAQAQELHRRAEGWIIAATLYLRRWNERGA----FAPAST 230 Query: 245 GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQ 304 + S + L D V DN+D A + LL+ + + + + G+ + Q Sbjct: 231 QTHDSGVDGLLRDVVWDNLDEAGQECLLRLSPFDAFSAEQAAFLLGKARLTQK-TWAALQ 289 Query: 305 GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHA 364 + R D + H +F R+ + AA + G A Sbjct: 290 HNAMLRHDPASGLYYPHSTLLDFTRRIFAELPEETRRDALLAAGDWCARSGDLENAFVFY 349 Query: 365 LAAGDALMLRDILL-----NHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 D + + L + + + + + +P + A + Sbjct: 350 YRLRDYERILALDLSGMKGEGLLDMPGVAYVPAIRDIAANSTRAMKATHPLSAIALALDL 409 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL 479 S + + E L A ++ + L L Sbjct: 410 LSANCHEEFGALFAELADIVETEP--------------------FAPHQRDYLRGELRLL 449 Query: 480 PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL- 538 Y+ I A V +L L + M R D W + S++ Sbjct: 450 ESFTCYNDIAAMGVRML---------EALQLAGRQTAMVRLDDSWTFGNVSVLFMFHREP 500 Query: 539 -FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 G L L + + A+ D AE S Sbjct: 501 GRLDGELADMQTYCPHYLALSGGHGAGGPEL------MEAECRLHRGDADPAEISGYKAR 554 Query: 598 -EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 + Q + +L + +L RG+ ++ L + G ++ ++ A+ R Sbjct: 555 HQAALREQASIVIGAEFLLGRVALLRGNAAALADAMDNLTGIAGQFPQRANRMA-ADMAR 613 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG---QWRNIARAQILLGEFEPAEIVLEE 713 + A+WLR A F+Q AR +L G+ E E Sbjct: 614 SFLMSLLHQPDEMAHWLREATPGSLARRFFVQVLPFAELCRARYLLLSGKPELLLGENEA 673 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 A +L L L ++ G++ A L AL LA G + F Sbjct: 674 ALGLASALNYSLALTYGHLHGAAAWFMLGKRDAAADSLRAALALAVPDGLLLPFAECWPW 733 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 + L+++ PE+ A + + + A D + R Sbjct: 734 IGPLLKKM-HPGVCPEMPPAFAADVFSLAERLEAGRRAVADTLYSAR-----------GR 781 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 L+ RE +V L+ G S +IA L ++ T+KTH++N YQK+G + R D Sbjct: 782 FGLSPREDEVARLMADGLSYGEIAQHLCISLNTVKTHLKNAYQKVGTSSRSD 833 >UniRef50_Q1LD93 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=cellular organisms RepID=Q1LD93_RALME Length = 855 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 169/904 (18%), Positives = 291/904 (32%), Gaps = 70/904 (7%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIGW 61 KL P +R+ LLA+L A + L ++ + GYGKTTL++QW + +GW Sbjct: 9 KLMPPRLGGGIAMRDALLARLHEARHAALVVLAASPGYGKTTLLAQWRQQLVGARARVGW 68 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 SL + RF + + A+V G + L LA Sbjct: 69 LSLGPELDAPTRFCAAIAASVASVVQGDVSPSSRHDPTE----------ALIAALAAVPD 118 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 LYL++D + + ++ I + L L + +R P L + L ++E Sbjct: 119 ELYLMLDGAEYLRDTGAWAVLQALIDARLPRLHLALATRCRPALRLGQLGAEGVVVEFDD 178 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 + LAFT E + A S R+ + GW ++++A Sbjct: 179 ESLAFTLAETRACLPPESG----QAASVRLMEATRGWPAGVRMLA-------------GG 221 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEI 301 R + + L Y + V + + L A L L VTG + Sbjct: 222 RAPDDSRAALDAYWSEVVAPGLSVGQARLLRWLAWLDRWTPELAAEVTGVPRAAECARSL 281 Query: 302 ERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 QG+F+ W HPLF ++LR+ A L +HR A +W+ G EA+ Sbjct: 282 VGQGIFIGPARAHAGWHTLHPLFADWLRRSMPLAGADRL-ALHRRAVAAWLRVGSSGEAL 340 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 HA+ A D ++ ++ ++ S+L L + + +++ P L L AW Sbjct: 341 DHAMRADDGGLVAHVVREAMPAMPALSQLRALPDWIDQAGVKHVVDEPALWLAAAWACTV 400 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 R GE LA D + + +RA +A +P + P Sbjct: 401 AARLGEAERWLAMVA------GCDDVAPQVALVRASIAFQKDDPATMDVWLARLGGHALP 454 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 I A + + ++ + + + + Sbjct: 455 HPSLEHIRAALAVRCGAMLHRPEFPPVPRLEAA-------PHDELVAMAHGAAALTMLLR 507 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 G + A A ++ + H + A L R +EA +++ Sbjct: 508 GDARRAQAIGMPAARMAQQIHGRRSVSACVCAVPVAAALLEQDRAEEAAEMMACWLDLAH 567 Query: 602 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 661 P + + GD AR+ L + G+ RV++ Sbjct: 568 HSSPDVMIVATLCQARLQWLAGDQHGARATLAEAQAHAA-GRGLMRVQLRLLAQRVVFAI 626 Query: 662 MTGDKAAA-------ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 714 GD A + + R + G A LE + Sbjct: 627 QAGDLRHAGLLQDELDALAATLDASDMRAREVGTIAALSRVRVALSAGNPVGALAALEPV 686 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 L LL ++ R R L AL R G + E Sbjct: 687 -----RSDNAGALVLIDLLFARVNAALDRPQLVVRHLESALAAGLRLGLLRMLRDEPGIP 741 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS 834 A + + + R + ++ Q Sbjct: 742 ALLDCVQPSGDAVRDNWLGRVRAAKDQLQQPATCLPMIR------------RRRRDGEPE 789 Query: 835 PLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLL 894 LT RE ++ L+ SN++IA L ++ T+K ++R +Y KLGV+ R + + + Sbjct: 790 HLTPRERDIVALLEQSMSNKRIALVLNLSVDTVKWNLRQIYAKLGVSTRYEVILAVRNRA 849 Query: 895 KMMG 898 G Sbjct: 850 LRTG 853 >UniRef50_D2S7N2 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S7N2_9ACTO Length = 766 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 166/727 (22%), Positives = 259/727 (35%), Gaps = 32/727 (4%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKN-DIG 60 L+ KL+ P V R RL +L + ++ + AGYGK+TL++ WA + Sbjct: 11 LLAGKLTVPQVPPSLVPRPRLQHRLDAVRRTPVTVVAAGAGYGKSTLLAAWARHAGMPVA 70 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +L ++ RF +Y+ A+ +T L +L A Sbjct: 71 WVTLGSSEDDPARFWTYVATALAGSTPDVAGPALRALTVPSVDPLDVAVPELLNGFAARD 130 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 P LV+DD H +T+ + E + F + H P L +V+ SR P +G+A LR R +L E+ Sbjct: 131 EPTVLVLDDLHEVTDARVTEGLEFLLDHLPPALRVVLASRTEPPIGLARLRARGRLTELV 190 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIE-----AAESSRICDDVSGWATALQLIALSARQNTHS 235 + L FT QEA+ + + A + + GWA L L AL+ R Sbjct: 191 AADLRFTVQEARALLTSVVHGGPDDPGPEPAALAGLLARTEGWAAGLVLGALTLR---DR 247 Query: 236 AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQ 295 AH A D+L+ EVL R LL+SA L + L V G + Sbjct: 248 AHGRAVPHGPPGLRSAVDFLLAEVLAGQTPDRRELLLRSAPLDRLCGPLCDAVLGRADSG 307 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 L +ER G+F+ +D G W+ HPLF LR+ A + E+ R AA + QG Sbjct: 308 AVLAGLERDGVFVTAVDGDGRWYRVHPLFRAALRRELD--DPAGVAEVQRRAAVWFWEQG 365 Query: 356 FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQ 415 EAI L AGD+ D L+ + + + + E L + ++ L+L Sbjct: 366 LVEEAIRARLGAGDSAGAADWLVRSTGTFLATARVGVFAELGNRLDPAVVADSVPLLLSL 425 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAIND--------GNPDE 467 AW R V LL RA + + R F +A +P+ Sbjct: 426 AWAAGVTGRLDRVPALLDRAAAQARAGRPGAGFPGFAGAVGAIAALRAVYGTTAEASPEV 485 Query: 468 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HY 526 A A A+ +VA LG L G +LA + Q + Sbjct: 486 ALAAAHEAVAAETDPELPGWVVARVALGGALLTAGREAEALAALDAAWQAPAASALPVFS 545 Query: 527 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH-----------EFLVRI 575 L + L G + +A +L+ + + L Sbjct: 546 HLEVAGLLAWCLVQPGDDDPDPDRDARAERLLRSTRADAAALEAHLGDAAAAALALLHAA 605 Query: 576 RAQLLWAWARLDEAEASARSGIEVLS-SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 634 L RL A A + ++ P + L + +LA GD A L+R Sbjct: 606 AGVLDRRAGRLGSARAHSDRAAVLVEVQAHPAVAVLVLVSAAETALAAGDPTAALEFLDR 665 Query: 635 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 694 + V + + + A T + + Sbjct: 666 AREARLSAPPSPILDRQIAAVELRAGRRAATRVRPALLEPLTEREVSVLRALRGPLSQRE 725 Query: 695 ARAQILL 701 A + L Sbjct: 726 VGAALHL 732 Score = 65.3 bits (158), Expect = 1e-08, Method: Composition-based stats. Identities = 94/713 (13%), Positives = 165/713 (23%), Gaps = 45/713 (6%) Query: 224 LIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAI-----LR 278 L+A AR + + + Y+ + + L + L Sbjct: 57 LLAAWARHAGMPVAWVTLGSSEDDPARFWTYVATALAGSTPDVAGPALRALTVPSVDPLD 116 Query: 279 SMNDALITRVTGEEN-GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELA 337 L+ + + L+++ P L R + + Sbjct: 117 VAVPELLNGFAARDEPTVLVLDDLHEVTDARVTEGLEFLLDHLPPALRVVLASRTEPPIG 176 Query: 338 AELPEIHRAAAESWMAQGFPSEAIHHALAA----------GDALMLRDILLNHAWSLFNH 387 E A + AL G LL Sbjct: 177 LARLRARGRLTELVAADLRFTVQEARALLTSVVHGGPDDPGPEPAALAGLLARTEGWAAG 236 Query: 388 SELSLLEESLKALPWDSLLENPQLVLLQAWLMQ--SQHRYGEVNTLLARAEHEIKDIRED 445 L L +A P L +L+ + + LL R+ + + Sbjct: 237 LVLGALTLRDRAHGRAVPHGPPGLRSAVDFLLAEVLAGQTPDRRELLLRSAP-LDRLCGP 295 Query: 446 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT 505 A + + D A R L + Sbjct: 296 LCDAVLGRADSGAVLAGLERDGVFVTAVDGDGRWYRVHPLFRAALRRELDDPAGVAEVQR 355 Query: 506 RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 565 R+ + + A S ++ + G A +L N Sbjct: 356 RAAVWFWEQGLVEEAIRARLGAGDSAGAADWLVRSTGTF-LATARVGVFAELGNRLDPAV 414 Query: 566 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML----IQCSLA 621 + L+ A RLD A + +P A Sbjct: 415 VADSVPLLLSLAWAAGVTGRLDRVPALLDRAAAQARAGRPGAGFPGFAGAVGAIAALRAV 474 Query: 622 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 681 G A ++ + RV A L Sbjct: 475 YGTTAEASPEVALAAAHEAVAAETDPELPGWVVARVALGGALLTAGREAEALAALDAAWQ 534 Query: 682 ANNHFLQGQWRNIARAQILL-------------------GEFEPAEIVLEELNENARSLR 722 A + ++ A +L + E Sbjct: 535 APAASALPVFSHLEVAGLLAWCLVQPGDDDPDPDRDARAERLLRSTRADAAALEAHLGDA 594 Query: 723 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLI 782 + L L +AGR A+ A L + V+ + A+ Sbjct: 595 AAAALALLHAAAGVLDRRAGRLGSARAHSDRAAVLVEVQAHPAVAVLVLVSAAETALAAG 654 Query: 783 QLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQ 842 E + L + E R P PLT+RE Sbjct: 655 DPTAALEFLDRAREARLSAPPSPILDRQIAAVELRAGRRAATRVRP--ALLEPLTEREVS 712 Query: 843 VLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 VL + S ++ L ++ T+K++ R+LY+KL V R++AV+ + L Sbjct: 713 VLRALRGPLSQREVGAALHLSINTVKSYTRSLYRKLDVGSRREAVERGRALGL 765 >UniRef50_B2UD70 Transcriptional activator domain n=1 Tax=Ralstonia pickettii 12J RepID=B2UD70_RALPJ Length = 1071 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 138/823 (16%), Positives = 248/823 (30%), Gaps = 32/823 (3%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGA-NNFRLALITSPAGYGKTTLISQWA-AGKNDIGWY 62 SK++RP + V+R R+L ++ + + SPAG GKT L + A WY Sbjct: 8 SKINRP-QSGGIVLRPRVLNRIGRGFAASPIVWVASPAGSGKTKLAISYLEASGLPAIWY 66 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL-AEWHS 121 +D GD F A A + L + + F L + Sbjct: 67 EVDAGDMDPASFFRTFGQACAAHLGADSATQPPLFSPDHLFDLAAFARRYFRALFSGLPE 126 Query: 122 PLYLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 LV+++ H P ++ + E++ ++VLSR+ P +A L+ QL + Sbjct: 127 ATLLVLENVHAAEAEPSFKGILQAALAEASEHVRILVLSRSAPPPELARLQANQQLALVD 186 Query: 181 SQQLAFTHQEAKQFFDCR--------LSSPIEAAESSRICDDVSGWATALQLIALSARQN 232 Q L T +E E + + GW A+ L+ + Sbjct: 187 WQHLRLTEEETGAILAGHPAALATLEQRPDAERELAGGLHARSGGWVAAVVLLLDQIGRV 246 Query: 233 THSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEE 292 + L Y E++ R FLL +AIL + + A ++TG Sbjct: 247 GSYDVDRLD-----SREVLFPYFAQEMIVAASPELRRFLLCTAILPNFDLAEARQLTGST 301 Query: 293 NGQMRLEEIERQGLFLQRMD-DTGEWFCYHPLFGNFLRQRCQWE-LAAELPEIHRAAAES 350 + + Q F+ + G + YH LF FL R A E ++ AA Sbjct: 302 DVDHFVTSAHCQQYFIDQFGSGAGASYQYHALFREFLLSRLPDAFSADERQQLTANAAAL 361 Query: 351 WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ 410 A+G + A AG L + L HA + L + L LP L +P Sbjct: 362 LEARGELAGAGELLADAGLMPQLAALALRHAPMVLQQGRYRTLSDLLGQLPTAVLNADPW 421 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTM-HAEFNALRAQVAINDGNPD--- 466 L+ + G A + + ++++ + + Sbjct: 422 LLFWAG-TSRMALDPGNARLYFEPALTLFQAHDNAAGCYLAWSSIVDCIYFESRDYRPLT 480 Query: 467 EAERLAKLALEELP--PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 524 + P P V SVL + S + + Sbjct: 481 HWLEMLDTLRARYPAFPDAQIEARVLASVLAALAFHAMGHADSRHWTDRAL-VFIGTVDV 539 Query: 525 HYALWSLIQQSEILFAQGFLQTAWETQE-KAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 583 + G L+ A + + + Q + L +A Sbjct: 540 QTQASLGFMLTVYHLWTGDLERARVVLQLMRAAVASPQTSDLLRTTILTTEAMGYWFFAE 599 Query: 584 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK 643 A + S + L +++ G++ A S +L + G+ Sbjct: 600 NDACIAVVEQTEALMHASDIYLWKHALLNHGLA-AAISAGNVMEAESFRAKLAQDIHMGR 658 Query: 644 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 703 + + + + Q +A + A LLG+ Sbjct: 659 PLDQAMHHFERGWLALQQDRLREAELMVEFGRNGFRSLNFRFGVAFTLATSAYIAHLLGQ 718 Query: 704 FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 E A+ +EE +R + L L++ + G + L +AL L R G Sbjct: 719 AEQADTFVEEAEALSRDVDSKVALCHTLMVRAVMALDRGAPTS--PWLPEALALGRRFGI 776 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHH 806 + +A+ + ++ + Sbjct: 777 TNFPGWHDPMVARLAAHALATGIETNYVTALVRKRRLQAPTAR 819 >UniRef50_UPI0001C310C7 ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C310C7 Length = 873 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 180/920 (19%), Positives = 301/920 (32%), Gaps = 78/920 (8%) Query: 5 SKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSL 64 ++ P V R RLL ++ L L++ PAG GKTTL++ WA + Sbjct: 2 TREHPPPLPRTLVHRPRLLERVDAGVRGPLTLVSGPAGAGKTTLLADWAHARATA----- 56 Query: 65 DEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLY 124 D+ + + Q A A + L ++ L A Sbjct: 57 ---DDHRTVLWRTVETTAQA--GDLLAQLTRAAPLPGASPLVAIVDGLGAHAA------- 104 Query: 125 LVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQL 184 +P + E + +R + + L +V+ +R P L + +R+ ++E+G +L Sbjct: 105 ------ERAHDPALAERVAALLRERTDALHVVLATRGEPPLPLGRVRLDATVVELGPAEL 158 Query: 185 AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLA 244 AFT +EA+ R + AA++ + V GWA L Sbjct: 159 AFTWEEARSLLAAR----LPAAQAHARWEQVEGWAAGLT--------------------- 193 Query: 245 GINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQ 304 S L Y+ E+L + R FLL+ ++ + L +TG + L+ + R Sbjct: 194 -REPSELPAYVERELLGGLGDELRDFLLRVSVADELTPELAAVLTGAADAGGTLDRLARA 252 Query: 305 GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHA 364 + +D G + LR L E E+HR AAE G A HA Sbjct: 253 HALVVPLDRHGGGYRLARPLREALRAALPAALPGEASELHRRAAEWHGRAGDALAAARHA 312 Query: 365 LAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 LAAG + D L L + E L A+P +L +P+L + L ++ Sbjct: 313 LAAGAPELAADTLAGAWLDLLARGRDVEMAELLAAMPAATLAGDPELRVCAGALATARDA 372 Query: 425 YGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF 484 + E R+ A + P A+ A L+ G Sbjct: 373 VAQALDRRFDGEAAAGATRDSMGATLAAARLRLARLEGDVPAAADAAAALSDAGPDGGEA 432 Query: 485 YS----------------RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 ++ R +A LG G + A ++Q AR H A Sbjct: 433 WAETGAEVPGGLAAQRRRRTLALQQLGVAELVAGSAAGAAAHLEQALGTARAEGFDHLAA 492 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLD 587 L + +G L++A A +L + + A + W R Sbjct: 493 ACLGPLCGLDAQRGRLRSAAAWGAAAIELAERIDDRRPAVLVPAHVGLAVVAWLRDERFA 552 Query: 588 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 647 AR+ + + L L + + + A G+ + Sbjct: 553 AEAELARAEACLAEAGPAADPLAALTVRLPAAWLAAADARAAGPAGGAGTAGAAGRAGTA 612 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPA 707 + T R + L + + LG A Sbjct: 613 GAAGRAGTAGAAGAETELARLEEAAARALLAAPRLPDWLLLALDEARVKLLLALGRTGAA 672 Query: 708 EIVL---------EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 758 E L A D L ++ +A + VL L A Sbjct: 673 ANAASAPRGPSRPERLLLGAHVALAREDPAEARWLADRFLARATTDTRPAHVLEGMLLQA 732 Query: 759 NRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQ--RILREINQHHRHKFAHFDEN 816 + T + + + + + + A +LR + + F Sbjct: 733 STTYELGTVWDALSWLERAIAAAAEERCRRPFAEAGAPIGALLRVLARRGPWPPVGFVAE 792 Query: 817 FVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQ 876 ++ E S L+QRE +L + SG S +IAGEL V+A T+KTH+ ++Y+ Sbjct: 793 LLDERPAGTAA-EAPGDSALSQRERAILRYLPSGLSKREIAGELGVSANTVKTHVSSIYR 851 Query: 877 KLGVAHRQDAVQHAQQLLKM 896 KL V R AV A++L + Sbjct: 852 KLDVRSRAQAVARARELGLL 871 >UniRef50_C5C0G8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C0G8_BEUC1 Length = 854 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 137/898 (15%), Positives = 274/898 (30%), Gaps = 73/898 (8%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG----KNDIGWYSLD 65 P + V R R+LA+L L ++ +P G+GKT+L+S W +D+ W +LD Sbjct: 18 PRVAESYVPRPRVLARLERL--APLVIVRAPRGFGKTSLLSWWLRTTKHTDHDVVWLTLD 75 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 + F L+A ++ A + + + L L Sbjct: 76 RHAVTEAEFWELLLAGLRSAGLAEGVGATSAR------------RSVHDAVRSLTRRLVL 123 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 V+D++ + + + + Q + + L V L + D +L + S LA Sbjct: 124 VMDNFPSVPESLDGDLVDLV--QQSDLIHLAVAGHRHRDLERLGVIALDAVLVLSS-DLA 180 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAG 245 + + A+ R+ +V GW ++ + Sbjct: 181 LDADAIGELAAGI-GLDLTRAQIDRVAGEVGGWPALVRALL----HGIEQRDVVGESFTY 235 Query: 246 INASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQG 305 ++ + ++ + + VD + R F+ ++++ L + + + L + Sbjct: 236 VDWRLVDLFVREVLAGVVDESVRSFMARTSVADEFTRELAQELYPDRDVTFLLSRMVEAH 295 Query: 306 LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHAL 365 L ++ D + Y + + + A + + A+ HA+ Sbjct: 296 LLGVQVIDGVPVYTYPRAVRFAIDRLLAESDPELRQALLGIATRWFADRDDARGALVHAV 355 Query: 366 AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRY 425 A D + H L L +++ +P D + NP+L + +++ H Sbjct: 356 RARDWDQAVSAVDRHWVQLVAQ-HPDALSHAIRGMPVDLVASNPKLRVAHEFILPLTHPT 414 Query: 426 GEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER----LAKLALEELPP 481 +T A D + + + A A + + A P Sbjct: 415 DLASTHRAELAGVAPRTESDAVRTRVSTVIALSATGYVDIAQEVAQQWGRAADVSGAAPG 474 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 541 + G G++ S + A++ S + + Sbjct: 475 DVDHEVPTLLFQWGSTRLAAGDVIGSRYAFSEAFAWAQRMGDALVRRTSAVGLALTHAIN 534 Query: 542 GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 G E + E + + A+ L L + A + S Sbjct: 535 GVPLLTHEWLGRV-----ELDEDVEEPVTRAAVVIAEALAGVDMLADEAALLADNLPERS 589 Query: 602 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 661 S L + Q + GD + + E L + Sbjct: 590 SPDELWALVAF-VRGQIIASGGDPGAMLACADACEEGLARAPRGGIAEALLVSTLGEVLV 648 Query: 662 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 721 G++A L +A+A++ + + + ++ R Sbjct: 649 AQGERARFRRILASATDS----------PILAVAKARLAWQDGDGVKARTIAVDALQRPT 698 Query: 722 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQL 781 L+L+ L R++ A AL++A+ TG F A L Sbjct: 699 ITQRSRLELLVLMAVLDLDRDRRASALSYARQALQVAHGTGQRRPFQFVPRAQLATLATE 758 Query: 782 IQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREW 841 + E +P + LT+RE Sbjct: 759 LPDLGELLGEPAFEAF--------------------------GDVMPPAVSAVVLTERER 792 Query: 842 QVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMGY 899 +LG + S S +IA L V+ T+KT +R +Y+KLG R++ +Q A+ + Sbjct: 793 TILGELASTSSVPEIATRLFVSPNTVKTQLRGIYRKLGTHSREETLQRARDAGLLDPS 850 >UniRef50_UPI0001C32137 ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32137 Length = 730 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 149/662 (22%), Positives = 244/662 (36%), Gaps = 16/662 (2%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK-NDIGWYSLDEGD 68 P T +RER+ A L A + L ++ +PAGYGKTT ++ W + D W SLD+ D Sbjct: 18 PRPRRETFLRERVSALLDHALDQPLTVVCAPAGYGKTTALADWCRRRDGDGAWLSLDDKD 77 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSL-FAQLFIELAEWHSPLYLVI 127 N RF + L+A + + + E T + A + + +V+ Sbjct: 78 NDPRRFCARLLATIDDLSPSELWMAEQALAGGSDLVETVIPLAVDALGDRRGAAAAVIVL 137 Query: 128 DDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFT 187 DDYH I H+ + + P + LV+ SR P L + R + +++LAF Sbjct: 138 DDYHAIFEEACHQLVVALLDALPPGVRLVLASRTRPPLRLPRRRAAGAAATLDARELAFD 197 Query: 188 HQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGIN 247 E + + RL +E + I V GW L L+A +A + Sbjct: 198 LDETGRLLNGRLRLRLERGQVEAIHARVEGWPAGLSLVA---SLRDATALERFLETPERT 254 Query: 248 ASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLF 307 +++YL +EVLD + +TR FL +++ L MN AL V + + +++ +F Sbjct: 255 PFEIAEYLTEEVLDALPPSTRVFLRRTSPLTRMNGALCAAVLDDPAARQLFDDVRESNVF 314 Query: 308 LQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAA 367 + +DD W YH LF L + + + ++HR AA + +G AI HA AA Sbjct: 315 VIPLDDD--WVRYHRLFATLLERDLRRHEPTIVVQLHRRAARWFECEGMTEAAIDHASAA 372 Query: 368 GDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGE 427 GD +L W LF + + +L +P D P + + G+ Sbjct: 373 GDGEHAARLLHGSWWPLFAERRYTTIRRTLARMPPDRGRYAPFCDAIDVLCLSLTG--GD 430 Query: 428 VNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSR 487 + + R E +D + + LR D A+ G +R Sbjct: 431 LRLIARRLEQLDQDRDSPGVAEIVDLLRISPYYGDIERALADGWKIWGRAA---GDVDAR 487 Query: 488 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTA 547 L V+ G A+ ++ E R D W L + + L+TA Sbjct: 488 ARYAGKLAIVMWFAG---EREAIRREVEPYMRIADRPVVRCWELAALALTAADEDDLETA 544 Query: 548 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-QPQ 606 + A +I E + L R EA + + S + Sbjct: 545 EQHARDAVAVIEAAGGESSLESHLAYLALGEALRRRGRFAEAHDHVARALRITSRHPSAL 604 Query: 607 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 666 L M Q L+ D ARS+ ++ + V T + Sbjct: 605 YHGLALVMHAQLDLSTLDRRAARSRAKAARRIVDRFRDVGVVAERLAAVEDALDLPTHEA 664 Query: 667 AA 668 A Sbjct: 665 VA 666 Score = 76.1 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 65/375 (17%), Positives = 120/375 (32%), Gaps = 14/375 (3%) Query: 523 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 582 A + +L + A + + ++ F I L Sbjct: 367 DHASAAGDGEHAARLLHGSWWPLFAERRYTTIRRTLARMPPDRGRYAPFCDAIDVLCLSL 426 Query: 583 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 642 +E L + + + L++ S GD++ A L + G Sbjct: 427 TGGD---LRLIARRLEQLDQDRDSPGVAEIVDLLRISPYYGDIERA---LADGWKIWGRA 480 Query: 643 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 702 D + I G++ A + + + +A Sbjct: 481 AGDVDARARYAGKLAIVMWFAGEREAIRREVEPYMRIA-DRPVVRCWELAALALTAADED 539 Query: 703 EFEPAEIVLEELNENARSLRLMSDL--NRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 760 + E AE + + S L + L L + + GR ++A + AL++ + Sbjct: 540 DLETAEQHARDAVAVIEAAGGESSLESHLAYLALGEALRRRGRFAEAHDHVARALRITS- 598 Query: 761 TGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVER 820 H +A + + L+TL + R I R + Sbjct: 599 ----RHPSALYHGLALVMHAQLDLSTLDRRAARSRAKAARRIVDRFRDVGVVAERLAAVE 654 Query: 821 LLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 E + S T E +VL L+ + + QIA EL ++ +T+K+H LY++LGV Sbjct: 655 DALDLPTHEAVAGSEPTAAERRVLELLPTDLTRRQIAAELRLSVSTVKSHTWRLYRRLGV 714 Query: 881 AHRQDAVQHAQQLLK 895 R DAV A++ Sbjct: 715 DTRADAVSIAREQGL 729 >UniRef50_C5BYP8 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BYP8_BEUC1 Length = 895 Score = 214 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 182/916 (19%), Positives = 321/916 (35%), Gaps = 65/916 (7%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGA-NNFRLALITSPAGYGKTTLISQWAAGKNDI 59 ++ K++ P R + T+ R RL A L A + ++ + +PAG+GK+T + WAA ++D+ Sbjct: 27 VVPRYKVTVPRRGEATIARPRLSAMLDDAVASRPVSHVAAPAGFGKSTAAAAWAADRSDV 86 Query: 60 GWYSLDEGDNQQERFASYLIAAVQ------QATNGHCAICETMAQKRQYASLTSLFAQLF 113 W SLD D R ++AA+ + A+ R L + Sbjct: 87 AWLSLDPYDADPRRLYRGVLAAIATALADDELPAPLAAVLRPGVHPRDPEDAIDLLDGVL 146 Query: 114 IELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 L + PL LV+DD H + V +R + +++LSR+ L +L Sbjct: 147 EALDDLRRPLVLVVDDVHHVPPGVARPVVRAVLSAGLPTTNVLLLSRDASHLDGLDLDA- 205 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 + L FT +E + A++ + D+ GW A+++ + Sbjct: 206 ----TVTGADLGFTAEEIVTL-SGSYPPGLTQAQAVSLHDETRGWPAAVRMSLIDRPDRD 260 Query: 234 HSAHKSAR--------RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALI 285 + + R + YL DEVL + A F+ ++ + +L Sbjct: 261 AAERRGTPATPATTPARAVAAHDEAFGAYLHDEVLGALPRAVAAFVRRATTSTVITASLA 320 Query: 286 TRVTGEENGQMRLEEIERQGLFLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEI 343 +TG ++G L R+GLFL + D + + +H LF ++ R R + E A ++ Sbjct: 321 IALTG-DDGARLLAATLRRGLFLTPLGRRDGEDVYRWHDLFASWCRSRLEHEDPALARDL 379 Query: 344 HRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWD 403 H AA W A+ P E++ HALAAGD+ D+L+ A + + L E +ALP Sbjct: 380 HGRAARFWGARHLP-ESVPHALAAGDSGAAVDLLVEGALEALLNGGAAELLELCEALPP- 437 Query: 404 SLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG 463 + ++ ++V +++ + R E +LL RA ++ D A + Sbjct: 438 TARDDARVVAIRSVAARMSGRRDEAASLLERARAQLADHDAGDADGSHALAVAMLETFVA 497 Query: 464 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQHD 522 P A A+ L R LG + + +L L+ + +A +H Sbjct: 498 GPSSAPDAAERLLASPAALHPAVRAGLLYHLGRRATRRQQDPRGALHLLDEAVSLAERHG 557 Query: 523 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 582 + AL S +++ L A + + Q L + Sbjct: 558 LDGVALASRAERASALVDAAEPVLAEQAITDVLERAEISGWAQDARLALLRLEAGVFAYW 617 Query: 583 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 642 D A+ + L L + + G Sbjct: 618 RDEFDVAQRHFTLVTRARGDDEAVASLGSLYGALASIAT-----GDAGGAAAAAQGISQG 672 Query: 643 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 702 + +R+ + GD A+A + + A + G Sbjct: 673 LASLPLEAMHALLRLKTAEAAGDVASAVREADLI-----GRSPCMPFAVVWQAEVFRVAG 727 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 E A VL L + R L A D ++ L +A + Sbjct: 728 RAERARNVLASLRAVP-----VRAHVRVAAELTGALLDAADGGDPLPQIVAGLHVAAPSR 782 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 F ++ + L L+ T + Sbjct: 783 FTRPYLERLPDLRPYLEALVHAGTDHRD-----------------------FLTGLLGTP 819 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 P LT RE ++L + S + +IA L V+ T+KTH R +Y+KLG + Sbjct: 820 AADGAPHRRSHWELTDRELEILDGLRSSLTAAEIARSLFVSVNTVKTHQRAVYRKLGARN 879 Query: 883 RQDAVQHAQQLLKMMG 898 R++AV+ A + Sbjct: 880 RREAVRLAASRGFLPA 895 >UniRef50_Q5Z0N1 Putative transcriptional regulator n=1 Tax=Nocardia farcinica RepID=Q5Z0N1_NOCFA Length = 863 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 171/884 (19%), Positives = 291/884 (32%), Gaps = 78/884 (8%) Query: 17 VVRERLLAKLSGA---NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQER 73 + R L + A + R+ L+++PAG GKT L++ WA + D+ + + D Sbjct: 54 IARPVLFEAVDAAVAARSGRVLLVSAPAGAGKTVLLADWATRRCDLAVHWVGAAD----- 108 Query: 74 FASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLI 133 + + A +P L++DD HL+ Sbjct: 109 ----------------------------EFTAAADPAAAVRARLATTTPGVLILDDAHLL 140 Query: 134 TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQ 193 +P + F+ P LT+VV +R P + L ++ +L +G+ +LA T +E Sbjct: 141 DDPAALAGLERFLLEAPPELTVVVCARFDPPIRWHLLELQARLTRLGAAELALTPEEISG 200 Query: 194 FFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSD 253 ++ A + + + GWA +++ A+ + A RL + D Sbjct: 201 LCAEH-GVTLDEAGRTALSELTGGWAALVRITAVHLAAHRDELAVLATRL----PHAVVD 255 Query: 254 YLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMD- 312 YL E+LD + R FL + + + + L + G L+E++R G L R Sbjct: 256 YLGAELLDGLSPTLREFLTVTGVPATFTEKLADDLVG-GGAGHCLDELDRLGFPLVRTPR 314 Query: 313 DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALM 372 T WF YHP+ R + +H AA A G A+ H AAGD Sbjct: 315 GTELWFSYHPMLRAHFRAEADRLGRDRIRALHLRAARWLHAAGHLPAALTHLCAAGDRAP 374 Query: 373 LRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLL 432 L D + +L S+L L D L ++P + L+ + L Sbjct: 375 LLDFVTAAGPTLVLDGAGSVLFAELTRTANDVL-DDPYVWALRVLDALVHGDTADAVACL 433 Query: 433 ARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATS 492 A A +AL +A+ RL + P G Sbjct: 434 DLALARRTHRTSFAPRAWTDALLRALAV--DVAAATGRLPEPPGPVEPTGHADIDCYTAI 491 Query: 493 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQE 552 + +G+L L+ + +A AL + + + A + Sbjct: 492 QVATAAIVRGQLADGEELLHRGLALADHACHPRLALRAAARLAFAAGAAESTTAMRQRAG 551 Query: 553 KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 612 +A L E L P + + A + E A + L Sbjct: 552 RALALAREHDLLDSPDAAQAMTVAAAAAYLRGEQPEPTQLAAALAMHRDRDGAHSPLVGR 611 Query: 613 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 672 + L + A L+R L + + + V + A Sbjct: 612 HGHLVGQLLAAETGTAVDALHRDMIALLDHDGIAASTAALLPHVVWALLRRHEPRTARLL 671 Query: 673 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 732 + + + ++E L +LR S L Sbjct: 672 VDRARNLLGD----VPDVTLARGACAHAEEKPRQTLELVEPLLREPAALR-PSSRVTARL 726 Query: 733 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 792 L ++ R A +L A++ A F+ F+ A+A + Sbjct: 727 LCAIARYRLDRPRAAGDMLDRAVRDAADEEFVRPFLDVPGAVALLDVFSGRFGR------ 780 Query: 793 HRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYS 852 DE FV R+ +P I LT E VL + +G + Sbjct: 781 ---------------------DEPFVARVRANPAARREIARPALTDTELLVLKQLPTGRT 819 Query: 853 NEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 QIA +L V+ T+KTH+R +Y KLG R A+ A++ + Sbjct: 820 VGQIAADLGVSINTVKTHLRGIYGKLGANSRVGALDTARRSGLL 863 >UniRef50_B8GBN1 Transcriptional activator domain protein n=3 Tax=Chloroflexus RepID=B8GBN1_CHLAD Length = 1083 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 162/792 (20%), Positives = 279/792 (35%), Gaps = 39/792 (4%) Query: 21 RLLAKLSGANNFRLALITSPAGYGKTTLISQWA-AGKNDIGWYSLDEGDNQQERFASYLI 79 R+ +L+ A + L ++ +P G GKT ++ A G W D D+ Sbjct: 48 RVEQRLAVAVDVPLTIVVAPPGSGKTVALAALATHGGWPAAWCRADTNDDPSRL------ 101 Query: 80 AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITN-PVI 138 + ++ R ++ L L EL L+IDD HLI P + Sbjct: 102 ---LAHLAAALSRVTSLDPNRLPRTIDGLINALTGEL---DDETLLIIDDAHLIDEQPEL 155 Query: 139 HESMRFFIRHQPENLTLVVLSRNLPQLGI-ANLRVRDQLLEIGSQQLAFTHQEAKQFFDC 197 + FI QP L LV+ R P + A R+R + L I + L FT EA Q + Sbjct: 156 RALIERFIVAQPPRLHLVLAGRREPNSPLIATARLRGEALLIEAADLLFTSDEAAQLWQQ 215 Query: 198 RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVD 257 + + + +GW AL++ + + L DYL Sbjct: 216 --AGKTLPVDFDELMTFSAGWPLALRIALDATDW-----RSALGLREQKGKPALDDYLER 268 Query: 258 EVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEW 317 EV + + L +SA LR + L + N + E+ R+ LF++ + G Sbjct: 269 EVFALLPEPLQRCLQRSAGLRWITPDLCAALDPTFNASELIAELRRRRLFVEPFGEHGVR 328 Query: 318 FCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDIL 377 F PL +L +R + E +HR AA + G A++H +AAGD + L Sbjct: 329 FQ--PLIAAWLSRRAAADP--EWVHLHRQAAAYFQQHGDHESALYHQIAAGDPAAVTTFL 384 Query: 378 LNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEH 437 A +L + + ++ L + E P+L+ LQA + +R RAE Sbjct: 385 P-LARTLLAERRAEAVLDWMRRL-ALTGDETPELIELQAAALHQLNRLEAALATYRRAER 442 Query: 438 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 497 + + +A + ++ P A L + AL+ LP RI + E Sbjct: 443 AFAASGDRLGQSRCLRGQAAIYLDTVQPAPATDLLRRALKLLPRQCGAERIELLLMQAEN 502 Query: 498 LHCKGELTRSLALMQQTEQMARQHD-VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 556 +G L L Q Q+A+ H Y + + + +L G L+ A + E+ + Sbjct: 503 WANRGRADIGLRLEQTARQLAKAHGLSAQYDPQAEVLRPRLLLRAGRLREARQLLEE--R 560 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP---QQQLQCLA 613 L +EQ + H + + A + +A A A + + + Sbjct: 561 LWSEQSCTRATGHREPLLLLALINAMLGVGPQALAFAHRMLIEAQQSGNLVTEALAELRL 620 Query: 614 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 673 +ARGD A +R LL + + GD A A Sbjct: 621 GHAYQLIARGDDQAALQHYSRGLRLLQQVTV-PRTRAEGYLGLTLLHGHAGDLARAEADA 679 Query: 674 RHTAKPEFANNHFLQGQWRNIARAQI-LLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 732 R + +A + L+ + L++ + ++ R L L Sbjct: 680 REGLLLAASAGDEWVAALMLLALGSVTLVADDPRGYEWLDQAEQRFQAGRDTFGLFLVHL 739 Query: 733 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFV---IEGEAMAQQLRQLIQLNTLPE 789 + GR + ++ + A G+ + + G L L+ Sbjct: 740 WRALAALRVGRTAAVDPLVDQVMHEAVEYGYEHVLIGPSLFGPRDIAALVPLLLRARTMP 799 Query: 790 LEQHRAQRILRE 801 + A R+LR+ Sbjct: 800 AHRDTAIRLLRQ 811 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 54/460 (11%), Positives = 112/460 (24%), Gaps = 34/460 (7%) Query: 409 PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA 468 +L L A+ + ++ +R ++ + AE + + G+ A Sbjct: 616 AELRLGHAYQLIARGDDQAALQHYSRGLRLLQQVTVPRTRAEGYLGLTLLHGHAGDLARA 675 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 E A+ L + + + R + Q EQ + Sbjct: 676 EADAREGLLLAASAGDEWVAALMLLALGSVTLVADDPRGYEWLDQAEQRFQAGRDTFGLF 735 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH---------EFLVRIRAQL 579 + ++ G ++ E E + + LV + + Sbjct: 736 LVHLWRALAALRVGRTAAVDPLVDQVMHEAVEYGYEHVLIGPSLFGPRDIAALVPLLLRA 795 Query: 580 LWAWARLDEAEASARSGIEVLSSYQPQQQLQC-----LAMLIQCSLARGDLD-NARSQLN 633 A D A R G +++ + ML + RG+ + AR Sbjct: 796 RTMPAHRDTAIRLLRQGFPSIATDDTVDDYHPGFTLRVQMLGAFRVWRGNQEIQAREWQR 855 Query: 634 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL--------RHTAKPEFANNH 685 L + + D AA Sbjct: 856 EKARQLFQLLLTMRGNWVQREQICAWLWPDADLEAAERQFKVTLNTLNAALEPHRPPRVP 915 Query: 686 FLQGQWRNIA---------RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 736 + + +A + E + + + AR + L + Sbjct: 916 PFFIRRQGLAYSFAPSFGVWIDVDEFELRASSALTATDPDFARRSAQAALQLYRGDYLAE 975 Query: 737 LYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQ 796 + + +R+L L A + Q Q+++ + E Sbjct: 976 SLYDPWTTEERERLLARYLATAVAYAERLSAEGKHNEAIQIAEQVLRRDRCYEEAYQLLM 1035 Query: 797 RILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPL 836 R + A+ V+ L + L T L Sbjct: 1036 RAHARAGSRSQAMRAY--TRCVQALREELGIEPLAETEAL 1073 >UniRef50_Q0SA69 Probable ATP-dependent transcriptional regulator n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SA69_RHOSR Length = 798 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 142/697 (20%), Positives = 239/697 (34%), Gaps = 25/697 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGK---ND 58 L+ ++ + P V R LL +L+ L+ PAG GKT L +QWA Sbjct: 28 LLAARFAVPAAPKILVRRPGLLDRLTAGTRGPATLVAGPAGAGKTVLAAQWAREHTALPP 87 Query: 59 IGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE 118 W +++ GD F +Y++ A+ + G +R L +L LA Sbjct: 88 PVWLTVEPGDA-PGLFWAYVLEALHR---GGVLPVGVGRPERAEEVDHPLLVRLADALAA 143 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 P LV+D + + P I S+ F + H L LV+ +R P L + R + E Sbjct: 144 SRQPAILVLDQFDAASAPEIAASLHFVVTHAAGGLRLVLTTRTEPLLPLHRYRAHGDITE 203 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I + L FT E + I A + + + +GWA L+L AL+ +++T Sbjct: 204 IRNADLMFTPAE-GELLLHSHGLEISRAGVALLAERTAGWAAGLRLSALAMQRSTDPEAF 262 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 A + + ++DYL+ EV A + LL + I ++ L +TG + L Sbjct: 263 IGAFAA--DRTTIADYLLSEVFAAQPPAAQELLLCACITDRIHPELADLLTGRRDADWTL 320 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 + R FL+R++ + W+ HPLF LR P + AA + G + Sbjct: 321 ARLARAHAFLERVEGSA-WYRLHPLFAEVLRAHLSQRYPGLEPRLRAQAARWFADTGRVT 379 Query: 359 EAIHHALAAGDALMLRDILLN--HAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 +A+ A AA D L++ L + + L ++ A+P D P L + A Sbjct: 380 DAVAQAAAADDWQFAAGQLVDNLAVGRLLTGLDTARLAQAFAAMPADLPGAAPAL--VDA 437 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVA--------INDGNPDEA 468 L + L RA+ ++ ++ +A A Sbjct: 438 ALRLADGDLTGCTAALTRADEFLRAGPVAPEPQLVRSMVGVLAGRAAGDLAATRQAATTA 497 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 +RL + L + LG G L R+ ++ + + Sbjct: 498 DRLLHTVPQPLRGQHPEIPAMVLGGLGSAELGAGHLDRAEQILTDAVTASERPGTQQPLR 557 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 SL + + QG L+ A +A + + + + A + Sbjct: 558 DSLGSLALVELLQGRLRQALAHSRRALAVAERSAVPPDDLVGLSHLVLAGVAAEHDDRAA 617 Query: 589 AEASARSGIE-VLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSD 647 A IE P + + + A GD A L E L + Sbjct: 618 AHTHLDLAIEPAGPRPAPMTTATAAVICSRLATADGDWRGALEILRTAETALVHP-PPQW 676 Query: 648 WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 684 D AA L + Sbjct: 677 AADELVIAASCAHLAHADTRAALEVLDAAPSGRPEHA 713 Score = 44.1 bits (103), Expect = 0.022, Method: Composition-based stats. Identities = 55/475 (11%), Positives = 103/475 (21%), Gaps = 13/475 (2%) Query: 374 RDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLA 433 +L LS L P + A + S+ + Sbjct: 232 VALLAERTAGWAAGLRLSALAMQRSTDPEAFIGAFAADRTTIADYLLSEVFAAQPPAAQE 291 Query: 434 RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSV 493 R A+ R A + Sbjct: 292 LLLCACITDRIHPELADLLTGRRDADWTLARLARAHAFLERVEGSAWYRLHPLFAEVLRA 351 Query: 494 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET--Q 551 + E + R D A + Q L Sbjct: 352 HLSQRYPGLEPRLRAQAARWFADTGRVTDAVAQAAAADDWQFAAGQLVDNLAVGRLLTGL 411 Query: 552 EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 611 + A + + A L A L A+ E L + + Q Sbjct: 412 DTARLAQAFAAMPADLPGAAPALVDAALRLADGDLTGCTAALTRADEFLRAGPVAPEPQL 471 Query: 612 LAMLIQCSLAR--GDLDNARSQLNRLENLLGN-----GKYHSDWISNANKVRVIYWQMTG 664 + ++ R GDL R + LL H + + G Sbjct: 472 VRSMVGVLAGRAAGDLAATRQAATTADRLLHTVPQPLRGQHPEIPAMVLGGLGSAELGAG 531 Query: 665 DKAAAANWLRHT--AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR 722 A L A L+ ++A ++L G A A Sbjct: 532 HLDRAEQILTDAVTASERPGTQQPLRDSLGSLALVELLQGRLRQALAHSRRALAVAERSA 591 Query: 723 LMSD--LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQ 780 + D + + L+L + + ++ A L A++ A ++ Sbjct: 592 VPPDDLVGLSHLVLAGVAAEHDDRAAAHTHLDLAIEPAGPRPAPMTTATAAVICSRLATA 651 Query: 781 LIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSP 835 E+ + ++ Q + + E++ +P Sbjct: 652 DGDWRGALEILRTAETALVHPPPQWAADELVIAASCAHLAHADTRAALEVLDAAP 706 >UniRef50_C8XGA7 Transcriptional regulator, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGA7_NAKMY Length = 927 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 146/922 (15%), Positives = 257/922 (27%), Gaps = 67/922 (7%) Query: 14 DHTVVRERLLAKLSG------ANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEG 67 DH V R+ L L A + L+ G GKTTLI + D+ Sbjct: 3 DHFVGRDTELDTLDELLVQARAGAPHVVLLVGEPGIGKTTLIDGFLRRHRDVTSLRAGGD 62 Query: 68 DNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL--AEWHSPLYL 125 D++ + A + +AQ ++ +QL L + P L Sbjct: 63 DSEMLYSYGIVRQLAASAGPAGLELAGQLAQVAPVPDPIAIGSQLLALLGERQQAGPAVL 122 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNL----PQLGIANLRVRDQLLEIGS 181 VIDD +P + R Q + L +++ R G+ + + EI Sbjct: 123 VIDDIQWADDPSVKSITFGLRRLQADQLLVILAVREESINELPDGLLRIVRGELATEIRL 182 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 LA E + A + R+ G + + + A Sbjct: 183 GGLA--EHELAELAGKLGIGSFPARAARRLRSGTDGHPLFARELLREFPPESWGAQDVLP 240 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILR-SMNDALITRVTGEENGQMRLEE 300 +LV + R + +A++ S AL ++ + + + Sbjct: 241 ------PPRSFRHLVRQRYRRCSTDGRRLVDAAAVIGLSAPLALTAQLADLPHALEAISD 294 Query: 301 IERQGLF-LQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 ER L L G HPL + + +H AA+ + Sbjct: 295 AERADLLQLVDASYPGSVRFPHPLVRSAVY---SAIDPPHRSALHARAAQLLDDTRTVLQ 351 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLK--ALPWDSLLENPQLVLL--- 414 A D + D+ A + N +S ++ L +L+ Sbjct: 352 HRFAAARQPDEGLAADLSAFAATEIHNGEWVSAATHLVRSSRLSPQPADRQRRLLRAVNF 411 Query: 415 -----------------------------QAWLMQSQHRYGEVNTLLARAEHEIKDIRED 445 +L + E LL+ A ++ + Sbjct: 412 LVIAGAASQAAHLAEEVASFPPGPLRDSTLGYLATATRGPAEAGRLLSSAWQQVDPAADR 471 Query: 446 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT 505 + A A + + A++ P R VA + L G Sbjct: 472 ELAATIALQSAIHFHGRLDGPATATWSAKAIDLTEPDDP-MRFVAETHRAFGLGYSGRFG 530 Query: 506 RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ 565 +L +++ + L TA ++ L Sbjct: 531 EALPVVEDVTGTIDGSPDARRVQHGAAH-GWLRLINDDLVTARSMLHAVA--VDAARLVT 587 Query: 566 LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGD 624 L F A+ + EA + I + + + + M + ARG+ Sbjct: 588 LNTAAFSYAHLARAEYLAGAWHEALVHIENAIALTTESESDYLRSLVFGMAVVIPAARGE 647 Query: 625 LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 684 AR+ + + + + A + +R + + Sbjct: 648 WAAARTYADLATAEASSYERAVAAAALAGAQLAAARDEPERVLDLLDPIRAMHPRQGIDE 707 Query: 685 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 744 + A A LG A+ L A R S + R L +AGR Sbjct: 708 PGIWPWPELYADALTALGRTAEADAFLIPHELLAHRRRRASAIARLARARGSLESRAGRD 767 Query: 745 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQ 804 S A + A R + A + L + + +L R Sbjct: 768 SVADQAFQLAAGQIQRLAMPYEQALIELAHGRHLVRTNRRKAAAKLLTAAGDRFTALGAA 827 Query: 805 HHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAA 864 + + I LT +E V LI G +N + A +L V+ Sbjct: 828 PFLAQTVAELRACGITVEGTTRQRLRI---GLTSQELVVARLIADGKTNREAAADLVVSV 884 Query: 865 TTIKTHIRNLYQKLGVAHRQDA 886 TI+ H+ N+Y KLG R+ Sbjct: 885 KTIEYHLSNVYAKLGGITRRQL 906 >UniRef50_C7QI16 Transcriptional regulator, LuxR family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QI16_CATAD Length = 998 Score = 202 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 153/989 (15%), Positives = 271/989 (27%), Gaps = 123/989 (12%) Query: 13 LDHTVVRERLLAKLSGA------NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDE 66 V R+ + ++ A + G GKT L++ G L Sbjct: 12 PHLVVGRDEEMRAVAAAFDALTAGTGGFLQVVGEPGIGKTYLLAAIRETALTKGISVLSG 71 Query: 67 GDNQQERFASY------------LIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFI 114 + E+ + L ++ G + ++ +LF Sbjct: 72 RATEFEQEMPFQILLDALSEHGDLARLLEGLPPGAGEVPAPDRPPGARSAPDIDRFRLFQ 131 Query: 115 ELAE-----WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIAN 169 L + P+ +++DD H I R + +VV R Sbjct: 132 ALRQVMASMADQPVLVLLDDVHWADPGSIDFIAFLSRRPIAGPVLIVVAHRERQAPAQLR 191 Query: 170 LRVRDQL---LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIA 226 + + + ++ + R + + + G L L Sbjct: 192 YALARDTDHGTVTRIELGPLSLADSARLLGDRNGTRRSVE----LHEKSHGNPLYL-LTL 246 Query: 227 LSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALIT 286 + RR G +S L ++ E + + + L+T Sbjct: 247 DRSNGYRRRPGDPNRREGGDASSRLEALILGETVTLSPDELAVASTAAVVGDPFTPELLT 306 Query: 287 RVTGEEN---GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEI 343 V + + + + L + G F HPL + + +I Sbjct: 307 AVMAGPALSQVECAVNSLVSRDLIREVPSGPGLVFR-HPLVRRVIYDQ---SAPTWRVDI 362 Query: 344 HRAAAESWMAQGFPSEAIHHALAAGDALMLRD---ILLNHAWSLFNHSELSLLE---ESL 397 HR A +G + H + + +L + S L+ +L Sbjct: 363 HRRALALLAERGASASERVHHVEHCATAWSPEYETVLCQAGQEAMSTSPLTAAHWFGVAL 422 Query: 398 KALP--WDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALR 455 LP DSL +L L A + R+ E LL + + +E L Sbjct: 423 NLLPHNEDSLRRRFELSFLVARALGLGGRFAESRDLLHEILQDASEATMVN-RSEAVVLC 481 Query: 456 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 515 A G EA L + + L RI LG + + A + Sbjct: 482 AHAEQRLGRYSEAIALLRAEVARLGTKTSSQRIGLCLELGLTALLANDYPAARADISWAL 541 Query: 516 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 575 AR+ Y +L + G A + A +++ L + + Sbjct: 542 DAARETGDRLYEATALAFSAFGEICVGHTDIARAAADSASAMVDGMPDSVLAGERETLCM 601 Query: 576 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL-QCLAMLIQCSLARGDLDNARSQLNR 634 R +A+ G ++ L L ++ G + A Q+ Sbjct: 602 LGWAEMLLERFSDADRHLARGRAIVRRTGQSHGLPHVLLGQCLVAMFTGRMAEALEQVQN 661 Query: 635 LENLLGN-------------------------------------------GKYHSDWISN 651 E+ +S W N Sbjct: 662 AEDAARLVGSDHLLGIVLAIKAPIQVWMSPRGKGDAALAGARAATALFTGSAVNSWWARN 721 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKP--EFANNHFLQGQWRNIARAQILLGEFEPAEI 709 A +R GD A+ + P + + A I LG+ + AE Sbjct: 722 ALMLRGHAELTNGDAASCVELVLRAGGPDLRMLGAPLVPEYAEILISALIRLGQTDRAEE 781 Query: 710 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF----IS 765 + A L L + L G A A+ + G Sbjct: 782 LARMAVVQAEQLDLPGQRGHAVRARGLLSALRGDHQSADADFTRAVAAFAQAGRLVEQAR 841 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRA-----------QRILREINQHHRHKFAHFD 814 V + R+ L TL A +R+ ++ Sbjct: 842 TAVFHARTLVMLGRREEALATLARSTAQAAGCGAIWVRDELERVRGQVAGRAPGGCVQSA 901 Query: 815 ENFVERLLNHPEVPELIRTSP---------------LTQREWQVLGLIYSGYSNEQIAGE 859 E + + P TS LT RE Q+ L+ +G+SN QIA Sbjct: 902 EETAAAVNDAPTNAVGESTSAASRSGTHDSARVLTVLTDRERQIALLVGAGHSNRQIATR 961 Query: 860 LEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 L ++ T+++H+ N+Y+KLGVA R + Sbjct: 962 LFLSERTVESHMGNVYRKLGVASRVALAR 990 >UniRef50_D2ASM3 ATPase-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ASM3_STRRD Length = 919 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 123/906 (13%), Positives = 249/906 (27%), Gaps = 82/906 (9%) Query: 35 ALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQ----------- 83 ++ G GK+ L+ AAG + + + L ++ Sbjct: 27 LVLRGEPGVGKSALLDLAAAGSAPMRVLRATGTEPETGLAFGALHQLLRSEAGLLDLLPG 86 Query: 84 QATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMR 143 + + L S + A L +IDD+ I + Sbjct: 87 PQRDAVRGALGLASSGTDDRFLVSAGVLSLLAEAAVPDGLLCLIDDFQWIDQASADALLF 146 Query: 144 FFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPI 203 R + E + +++ R + + + A + R + P Sbjct: 147 AARRLRTEGVGMLIAVRGDAGAHLRG--------VPDLRLTGLDSRSAAELLASRSAVPP 198 Query: 204 EAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNV 263 R+ G AL+ +A + + + A + + ++ + Sbjct: 199 AQEVGDRLVALTGGNPLALREVAGLLTPDQLAGRTPLPDPLPVGAGIGQIF--GDQVERL 256 Query: 264 DLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPL 323 A R L +A+ + LI R G + + HPL Sbjct: 257 PEAGRLIALIAAVEGLGDLGLILRAAGRLGVDPAELHPVEAAGLVGV--EGASIRFRHPL 314 Query: 324 FGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAA---GDALMLRDILLNH 380 + + R + + +H A AE H AA D + ++ + Sbjct: 315 VRSAVYAR---SSSVQRRLVHTALAELLDGAEDADRRAWHRAAASVGQDEGVAAELAASA 371 Query: 381 AWSLFNHSELSLLEESLKALPWDSLLE-NPQLVLLQAWLMQSQHRYGEVNTLLARAEHEI 439 + ++ + + A R G+ T LA A Sbjct: 372 ERARARGGYADAAVALARSADLTPDRAVRARRLTDAATAAWLGGRPGQAETCLAGARELA 431 Query: 440 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 499 ++ + AE LR + +N G+ EA+R+ + + + + E Sbjct: 432 RE---PLLVAELTQLRGRFELNGGDAAEAQRVFLEGADRVCGADPGRALEMLADASEAAS 488 Query: 500 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 559 G++ + + ++ E + R D + G + +T +A + Sbjct: 489 YVGDVAAIVDIGRRAEALPRGDDS----FLRAMLIGIGAMLAGDARRGGQTLRRALLRAD 544 Query: 560 EQHLEQLPMHEFLVRIR----------------------------------AQLLWAWAR 585 E + + R Sbjct: 545 ELSGASELLWASAAASYLGEVDVAAGFGVRAGRAARVSGLVGQLPVVLEFVSTAERINGR 604 Query: 586 LDEAEASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 644 L + A A G+ + LA L + RG D R + + Sbjct: 605 LGISAAIAEEGLTLAREAGYTNSAAAHLANLAAVAAVRGQEDACREYAQEALAIAIPHRI 664 Query: 645 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN--IARAQILLG 702 A+ + G AAA H A + G Sbjct: 665 GLRA-GTASYALGLLDLGMGRFAAAHARFSALTTAGPGAGHPTVVWRSTPDRVEAAVACG 723 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 + + A + L + + + + LL + A + +AL+L G Sbjct: 724 DHDAARATVASLEQWSVNAGTPASRA----LLARCRALLEDGERAVPLYEEALRLHAEGG 779 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 E A + ++ + + L + +A + + Sbjct: 780 ---PAPFEQARTALLYGERLRRTHRTGEARQPLRSALEAFQRLGAEPWAERAHSELRAAG 836 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 P + LT +E ++ L+ G SN +A L ++ T++ H+ +Y KLG+ Sbjct: 837 ESAARPGPAALNVLTPQELRIARLVAEGASNRDVAARLFLSPRTVEYHLYKVYPKLGITT 896 Query: 883 RQDAVQ 888 R + + Sbjct: 897 RTELAR 902 Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 61/547 (11%), Positives = 131/547 (23%), Gaps = 14/547 (2%) Query: 282 DALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELP 341 AL + +R + G+ R+ +L Sbjct: 385 VALARSADLTPDRAVRARRLTDAATAAWLGGRPGQAETCLAGARELAREPLLVAELTQLR 444 Query: 342 EIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALP 401 + D ++L + + + +++ + + + Sbjct: 445 GRFELNGGDAAEAQRVFLEGADRVCGADPGRALEMLADASEAASYVGDVAAIVDIGRRAE 504 Query: 402 WDSLLENPQLVLLQ-AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAI 460 ++ L + L RA ++ + +A + + Sbjct: 505 ALPRGDDSFLRAMLIGIGAMLAGDARRGGQTLRRALLRADELSGASELLWASAAASYLGE 564 Query: 461 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 520 D R + A G V + G L S A+ ++ +AR+ Sbjct: 565 VDVAAGFGVRAGRAARV---SGLVGQLPVVLEFVSTAERINGRLGISAAIAEEGLTLARE 621 Query: 521 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 580 + A L + + +G E ++A + + L Sbjct: 622 AGYTNSAAAHLANLAAVAAVRGQEDACREYAQEALAIAIPHRIGLRAGTASYA--LGLLD 679 Query: 581 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM-LIQCSLARGDLDNARSQLNRLENLL 639 R A A + + ++ ++A GD D AR+ + LE Sbjct: 680 LGMGRFAAAHARFSALTTAGPGAGHPTVVWRSTPDRVEAAVACGDHDAARATVASLEQWS 739 Query: 640 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 699 N + + + D A + Q R Sbjct: 740 VNAG-----TPASRALLARCRALLEDGERAVPLYEEALRLHAEGGPAPFEQARTALLYGE 794 Query: 700 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 759 L + L + + + +A +S A+ L Sbjct: 795 RLRRTHRTGEARQPLRSALEAFQRLGAEPWA--ERAHSELRAAGESAARPGPAALNVLTP 852 Query: 760 RTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE 819 + I+ V EG + +L E ++ L + + F + Sbjct: 853 QELRIARLVAEGASNRDVAARLFLSPRTVEYHLYKVYPKLGITTRTELARLVGAGPEFGD 912 Query: 820 RLLNHPE 826 P Sbjct: 913 AGGAAPG 919 >UniRef50_C3JUK9 LuxR-family transcriptional regulator n=2 Tax=Rhodococcus erythropolis RepID=C3JUK9_RHOER Length = 883 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 152/911 (16%), Positives = 298/911 (32%), Gaps = 79/911 (8%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND----IGWYSLDE 66 L ++ R+ L KL L ++ +P G+GK++LI+ W + W S Sbjct: 27 RTLATSIPRQALFEKLDR--RAALTIVRAPNGHGKSSLIASWLRAHLASERILVWVSAPR 84 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 + E F + ++ + A L F + L P+ LV Sbjct: 85 PSSTLEDFWAVVLDRIHAAG----------IALPDVDDLADPFTAVAKSLNALSRPVLLV 134 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 + LI+ P + + + + NL LVV + + + IG+ +L F Sbjct: 135 LIRPDLISEPELDDQLIELLA-LCHNLDLVVTL-SGFGMFAEPYLLDTAHEVIGADELLF 192 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 T + Q + ++ +I G ++ + R + S + R + Sbjct: 193 TTADTAQLLEQA-GVHTAEGDAEQITSLTGGLPALVRAAVPAVRNSRDSNRE--REIDMN 249 Query: 247 NASHLSDYLVDEVLDNVDL-ATRHFLLKSAILRSMNDALITRVTG--EENGQMRLEE--- 300 + DY+ D VL + FLL ++ RS+ + + + + E Sbjct: 250 IVQAIDDYVTDSVLAAAERVKQHEFLLATSFGRSITVDIAAMLFESQRPDAAETVHEIRA 309 Query: 301 ----IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 +E G+ + + E + P + + A +G Sbjct: 310 RLVTLETVGVLSRVETEADEKWKLPPAIRRSILAHHTRAGIDPSQRLSFLAHNRL-DKGH 368 Query: 357 PSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 + A+ +A+ A + + DI+ H ++ H L + +L+ +P ++ ++ + +A Sbjct: 369 HASALDYAVEAQNWTLAVDIVEQHWVTMIVH-NLDSVRSALQRIPAEAADKHSAVEAGRA 427 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMH---AEFNALRAQVAINDGNPDEAER--- 470 V LL + E+ + + +++ + G A Sbjct: 428 LFTMHPSERSTVVDLLPESPAELWALGAEAGAKDALSIACVQSIMLRMAGEYGLAAETTR 487 Query: 471 ----LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 526 L++ ALE P + G T S + A H V Sbjct: 488 RLSHLSRSALENNPEAVSAQLPLMRLQWAINFQLSGRFTESTIKARMAYHGALSHGVDFI 547 Query: 527 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 586 A S + G + A E + + + + + RA Sbjct: 548 ARNSAGSAALNWALAGEPRQATHWSELEQKHPDPGGWLEPVVKIAGLTARALTALDTLDF 607 Query: 587 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL-ENLLGNGKYH 645 D+A + + + + Q +L GD A L+ E Sbjct: 608 DDARLALTELGLPSDTEELW--AFVVYAHCQFALTSGDHTAALLLLHNAIEAHSKQYTAT 665 Query: 646 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 705 S + + G+ A + A P ++AR + +G+ E Sbjct: 666 SFALPLLQSAEIDLLLALGEGNKATALAKEIADPAANP-----WTLASVARLRQRIGQNE 720 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 A + + + + +LL+ + + G A + A +A++TG + Sbjct: 721 SAVALCHQFD--WSGVSYPRAQMESLLVQAVAHSELGEPRLASQEWSRACSIADQTGLLR 778 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHP 825 F A ++L + + + Sbjct: 779 SFATIASADVEKLESM--------------------------AETKSRALAEFSKRSPAE 812 Query: 826 EVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 PE + LT+RE +VL L+ G + +A +L V+ T+KT +R LY+KL V +R + Sbjct: 813 SFPEFVHIVELTEREQKVLSLLALGMGSAAMADKLYVSVNTVKTQLRTLYKKLDVHNRNE 872 Query: 886 AVQHAQQLLKM 896 A+ A+QL + Sbjct: 873 AITRARQLRLL 883 >UniRef50_A1T5L2 Regulatory protein, LuxR n=2 Tax=Mycobacterium RepID=A1T5L2_MYCVP Length = 732 Score = 201 bits (512), Expect = 8e-50, Method: Composition-based stats. Identities = 137/679 (20%), Positives = 252/679 (37%), Gaps = 18/679 (2%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQW-AAGKNDIG 60 + + + RP D V R +L +L A + L ++++PAGYGKTT + W Sbjct: 10 IPAATIGRPRIADRVVQRPGVLRRLKAAGSGDLVVMSAPAGYGKTTAAALWDFEDDRPFA 69 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +D D+ ++ AV + T + + + + + +++ E Sbjct: 70 WVRIDHLDDDPAHLLLHVATAVVRLTETDRTLLRYL--RGPGRPALTHLVPVVVQILEDC 127 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 PL LV+DD H ++ +++ I P T +L R++ + +A R++ ++E+ Sbjct: 128 GPLVLVLDDVHKLSAADAVTALQMLIDEAPATTTPALLGRHMLPVALARRRLQRSVVEVD 187 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 + L + +EA + P A + + D GWA + L A++ R T A Sbjct: 188 QEALRLSVEEAAEVLGSVSG-PHSDATVAAVVDLCEGWAAGVILTAMALRDGT------A 240 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 + + DY+V+EV+D +D T FL++SA+L + V G ++ LE Sbjct: 241 LEALTRRNNLVVDYVVEEVIDRLDGDTATFLVESAVLDRFTAEQLDTVLGRDDSARMLEM 300 Query: 301 IERQG-LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + G FL +D W+ YH LFG+ LR R + A E+ AA+ G Sbjct: 301 LYGSGNPFLIAIDHHRVWYRYHHLFGDVLRGRLRDLAPARFRELATRAADLLERDGDIDG 360 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ AL AGD ++ A L +L L L + E+P + +AWL Sbjct: 361 ALLQALDAGDRTRAAALVGREAVRLGFDGRAGVLARRLAMLDARTFAEHPDAAVARAWLG 420 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQV--AINDGNPDEAERLAKLALE 477 + ++ L A A + + G ++ R A + Sbjct: 421 VTTADAELIHRSLMLATRSDHGQPLSDGTPSVKVAVALISSLVGAGGVNDVIRQADVVRA 480 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 AT + G +G++ R+ AL++ + + A + + ++ Sbjct: 481 AGDRLVNPWWGAATVMKGAAEAMRGQVARARALLESALPVIEDLPGFQAAALAHLALLDL 540 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 A E+A L+++ L + + A + A + Sbjct: 541 AAGDDDGAVARS--EEARTLVDKYDLCDVVPMIVVYATSAVMAARVGDEVGARRAVAVSE 598 Query: 598 EVLSSYQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 654 +L + L +L + D + L E + ++ Sbjct: 599 TLLGRLGHLSARTALLGHGLLAWTAAVIQDPELLGRHLGAAERACHREPDAVALVQRVDR 658 Query: 655 VRVIYWQMTGDKAAAANWL 673 V+ + T AA L Sbjct: 659 VKAMAAGGTRPLTAAELRL 677 Score = 70.3 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 66/464 (14%), Positives = 138/464 (29%), Gaps = 17/464 (3%) Query: 435 AEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVL 494 AE + D L D + R +A + Sbjct: 282 AEQLDTVLGRDDSARMLEMLYGSGNPFLIAIDHHRVWYRYHHLFGDVLRGRLRDLAPARF 341 Query: 495 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 554 E+ +L + A A + +++ L G + Sbjct: 342 RELATRAADLLERDGDIDGALLQALDAGDRTRAAALVGREAVRLGFDGRAG----VLARR 397 Query: 555 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 614 +++ + + P + + A ++ Sbjct: 398 LAMLDARTFAEHPDAAVARAWLGVTTADAELIHRSLMLATRSDHGQPLSDGTPSVKVAVA 457 Query: 615 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 674 LI + G +++ Q + + + + W A ++ M G A A L Sbjct: 458 LISSLVGAGGVNDVIRQADVVR--AAGDRLVNPWWGAATVMKGAAEAMRGQVARARALLE 515 Query: 675 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR--LMSDLNRNLL 732 F ++A + G+ + A EE + + Sbjct: 516 SALPVIEDLPGFQAAALAHLALLDLAAGDDDGAVARSEEARTLVDKYDLCDVVPMIVVYA 575 Query: 733 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 792 + + G + A+R + + L R G +S L + T ++ Sbjct: 576 TSAVMAARVGDEVGARRAVAVSETLLGRLGHLSART-------ALLGHGLLAWTAAVIQD 628 Query: 793 HRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYS 852 + R + R D + + ++ + T PLT E ++L + S S Sbjct: 629 PEL--LGRHLGAAERACHREPDAVALVQRVDRVKAMAAGGTRPLTAAELRLLPHLASHLS 686 Query: 853 NEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 +++A EL + T+K+ +Y+KLGV+ R +AV A+++ + Sbjct: 687 LQRVAEELVIGRETVKSQATAIYRKLGVSSRGEAVAEAKRVGLI 730 >UniRef50_D2PS65 Transcriptional activator domain protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PS65_9ACTO Length = 1068 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 146/825 (17%), Positives = 249/825 (30%), Gaps = 32/825 (3%) Query: 9 RPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGD 68 P TV R RL A L RL + + AG+GK+TL+ WAA + WY++ D Sbjct: 1 MPEPAQGTVARPRLTALLEEGVQRRLLTVVADAGFGKSTLLGSWAAER-PCAWYTVRAED 59 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAE---------W 119 S L+ ++++ + Q + + + A Sbjct: 60 RSLAAVVSGLVESLRRQVPALSTVLTAELQGPRGPDADAEQETRALAYAAVLAEALEQNL 119 Query: 120 HSPLYLVIDDYH-LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 + L LV+DD H L + +R P L LVV SR GI LR R Q+LE Sbjct: 120 TADLVLVLDDLHELAAGDPAARLIEGLVRIAPPALHLVVASRTAVPFGIDRLRGRGQVLE 179 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I + LAFT E + L + + V GW A++L + R + + + Sbjct: 180 IDATALAFTVPETVEVLRVVLGDG-AEELAEPLQAAVQGWPAAVRLAVEALRTVSAAERR 238 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 S R A + L DYL +EV A R + A+L + L + G + L Sbjct: 239 SRLRRALRSDGPLYDYLAEEVFAAQPAAVRRLVAAVAVLPRFSSGLCEAI-GLSDSADIL 297 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 +++ +GL + D + +PL +F R R E+ + R A + + G Sbjct: 298 QQLRTRGLLVSAGDAD---YELNPLVRDFARDRLS-SDEQEMKALVRRAGRWFESVGEHR 353 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 +A+ A D+ + +L L + ++ ++ ALP D P L+ Sbjct: 354 DALACFQAV-DSDEVARMLTERGHVLVSGGLAEVVVAAVAALPTDL--RTPATDQLEGEA 410 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 Q + R + + + G D A + Sbjct: 411 RQVLGDWQGAEQCFHRIIDA-----DGEIPVGIAWRLGLIHHLRGRTDVAIATYR--RGR 463 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 + + + +GE L+ AR + + + Sbjct: 464 VDGQQPADEALLQAWWAGAHWLRGEFDECRELIDAAHAAARLSGDDRALAIAHTVLAMLA 523 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 + +A + + R A +E Sbjct: 524 AVDSDPRGNASHYLRALDHAERAGDLLQSI--RIRVNRGSHHIAEGDYTLGLEELDQALE 581 Query: 599 VLSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRV 657 + + L + L G LD A +L L + V Sbjct: 582 LADRAGFAVFRALALNNRGEALLRLGRLDEAIGELEASRALYQKLESKRVAQP--LAVLG 639 Query: 658 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 717 ++ GD+A A A++L E L E+ Sbjct: 640 EVYRERGDRAMARACFEEAIAMATDTKDMQSLVPSLAGLARVLAMEEPERAAELAEMARQ 699 Query: 718 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ 777 A + L+ L + AG K DA + +A L+ + + E A Sbjct: 700 AVGYGPVLGQCGALVALGWVTLHAGNKQDAAKTAEEAAALSRKRRDRAGLADALELYAAA 759 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 + L + + + Sbjct: 760 DGSEVLHEVLNIRNELGDPLGQARAELMLARRSQGPVRRELALRA 804 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 40/314 (12%), Positives = 80/314 (25%), Gaps = 6/314 (1%) Query: 517 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 576 +A AL + ++ +G + + A Q + + + Sbjct: 383 LAEVVVAAVAALPTDLRTPATDQLEGEARQVLGDWQGAEQCFHRIIDADGEIPVGIAWRL 442 Query: 577 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 636 + R D A A+ R G + QP + A RG+ D R ++ Sbjct: 443 GLIHHLRGRTDVAIATYRRG--RVDGQQPADEALLQAWWAGAHWLRGEFDECRELIDAAH 500 Query: 637 NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNIA 695 + ++ + + A+++LR E A + N Sbjct: 501 AAARLSGDDRALAIAHTVLAMLAAVDSDPRGNASHYLRALDHAERAGDLLQSIRIRVNRG 560 Query: 696 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 755 I G++ L++ E A L + + GR +A L + Sbjct: 561 SHHIAEGDYTLGLEELDQALELADRAGFAVFRALALNNRGEALLRLGRLDEAIGELEASR 620 Query: 756 KL---ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAH 812 L + GE ++ + + E + A Sbjct: 621 ALYQKLESKRVAQPLAVLGEVYRERGDRAMARACFEEAIAMATDTKDMQSLVPSLAGLAR 680 Query: 813 FDENFVERLLNHPE 826 Sbjct: 681 VLAMEEPERAAELA 694 Score = 47.2 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 40/375 (10%), Positives = 88/375 (23%), Gaps = 13/375 (3%) Query: 459 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 518 AI + + + + + G + + AL+++ + Sbjct: 287 AIGLSDSADILQQLRTRGLLVSAGDADYELNPLVRDFARDRLSSDEQEMKALVRRAGRWF 346 Query: 519 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR---I 575 AL A+ + + + LP + Sbjct: 347 ESVGEHRDALACFQAVDSDEVARMLTERGHVLVSGGLAEVVVAAVAALPTDLRTPATDQL 406 Query: 576 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 635 + AE I+ + + L RG D A + R Sbjct: 407 EGEARQVLGDWQGAEQCFHRIIDA----DGEIPVGIAWRLGLIHHLRGRTDVAIATYRRG 462 Query: 636 ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 695 + + G+ + + + Sbjct: 463 RV----DGQQPADEALLQAWWAGAHWLRGEFDECRELIDAAHAAARLSGDDRALAIAHTV 518 Query: 696 RAQILLGEFEPA--EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 753 A + + +P ++A + R + + G + L Sbjct: 519 LAMLAAVDSDPRGNASHYLRALDHAERAGDLLQSIRIRVNRGSHHIAEGDYTLGLEELDQ 578 Query: 754 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHF 813 AL+LA+R GF + + L +L +L+ + + ++ A Sbjct: 579 ALELADRAGFAVFRALALNNRGEALLRLGRLDEAIGELEASRALYQKLESKRVAQPLAVL 638 Query: 814 DENFVERLLNHPEVP 828 E + ER Sbjct: 639 GEVYRERGDRAMARA 653 >UniRef50_D1C1B5 Transcriptional regulator, LuxR family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C1B5_SPHTD Length = 1034 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 146/969 (15%), Positives = 285/969 (29%), Gaps = 110/969 (11%) Query: 14 DHTVVRERLLAKLSGA--NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQ 71 + R +L A + L+ AG GKT L+ G + + Sbjct: 87 RQLIGRRAEFDRLRAAIEGRGGVVLVAGDAGVGKTVLVEALGYEAIATGVQVMGARCFEL 146 Query: 72 ----------ERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 E F ++ + + L +EL+ H Sbjct: 147 DGTPPYGPWLEMFRPDRAPPDLPVPAPALSVKDALEAVAGRRKLHDQVLSFLVELSR-HR 205 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANL--RVRDQLLEI 179 P+ L++ D H IH + + + +VV R++ L + L E Sbjct: 206 PVLLLLGDMHWADEESIHLVRHLGRQIRRRPILIVVTYRHVELRPDEPLYRLLPHVLRET 265 Query: 180 GSQQLAF---THQEAKQFFDCRLSSPIEAAE--SSRICDDVSGWATALQLIALSARQ--- 231 ++++ + + R + + + + G + + S Sbjct: 266 EAERITLREWDRDDVAELVTARYQLSAADQDRLVTFLLNSSEGNPFFINELLQSLEDEAV 325 Query: 232 -NTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAIL-RSMNDALITRVT 289 L+G+ L L+DE L+ + RH L +A++ + + VT Sbjct: 326 LRLTDEGWILGELSGVRVPPLLRQLIDERLERLAPEARHLLQAAAVIGEEIPIDVWQAVT 385 Query: 290 GEEN--GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAA 347 + +E+ + ++ D F H LF L + HR Sbjct: 386 EVSDEALADVIEQALAVRVMVEMPQDPVLRFR-HKLFRQSLYEHMILL---RRRSWHRRI 441 Query: 348 AESWMAQGFPSEAI--HHALAAGDALMLRDIL---LNHAWSLFNHSELSLLEESLKALPW 402 AE A+ P + H AGD ++ A + + E++L L Sbjct: 442 AEVLAAEANPDPDVVARHFSEAGDPRAAEWVIASGRRAAGAFALAVTAARFEKALAILEG 501 Query: 403 DSLLENPQLVLLQAWLMQSQ-HRYGEVNTLLARAEHEIKDIREDTMH------------- 448 D + + LL + L A+ ++ ++ + Sbjct: 502 DDQRQRERAWLLCELAEAYRFTDPQRAIAYLDTAQRIADELGDEGLQTVIPYCKARVRTL 561 Query: 449 ----------------------------------AEFNALRAQVAINDGNPDEAERLAKL 474 A A AQV + G A A+ Sbjct: 562 EARNAFAELRESWRGIEGLPESTRHVLAGSPLAYAVSRATYAQVLAHYGAYGPALEHAER 621 Query: 475 ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW---SL 531 LEE P + A +G + + A + RQ + +H Sbjct: 622 FLEESPSADPREQGTAYFAIGLANAGLARPSEARAAFDRARTFFRQTETYHMVGATYDWE 681 Query: 532 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 591 + ++ ++ + A + L + + LL R +EA A Sbjct: 682 LDLVLQVYYPDRVEERRRLLDDAARAWRHSVFGALVLMGSFPTMIDSLLLE-GRWEEARA 740 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 SA + + Q L +L +GD A +++ + + + Sbjct: 741 SATAFLSA-----NAQPLGMRRILADLDRRQGDTARAWARIAEALPDGPDTEPPLNHFPY 795 Query: 652 ANKV---RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN--IARAQILLGEFEP 706 ++ GD A W+ + ++ + + AR G+ + Sbjct: 796 GLRLIGVAAELALDDGDLDWARRWILALERWLEWSDIVVGRAAPDHLWARYDAAQGDLDR 855 Query: 707 AEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISH 766 A E A + R + L +L A++ L A +LA Sbjct: 856 AWQHQREGLRRASNPRQPLAMLTAHRTLARLATLRRDFPTARQHLAGAERLATSFEAPYV 915 Query: 767 FVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPE 826 + A+ L + + L + +++H E Sbjct: 916 LALVQVTHAELLLASGRGHEAGGLLAAARATAEE------------LGAKPLLAVIDHLE 963 Query: 827 VPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 L+ RE +VL L+ G ++ ++A L ++ T+ H++++Y KLG++ R A Sbjct: 964 PRPTAVPGGLSAREIEVLRLVAEGLTDAEVAERLSISPRTVGGHLQSIYNKLGISSRTAA 1023 Query: 887 VQHAQQLLK 895 A + Sbjct: 1024 TSFAHKFGL 1032 >UniRef50_UPI0001B4E414 LAL subfamily transcriptional regulator n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4E414 Length = 944 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 131/942 (13%), Positives = 251/942 (26%), Gaps = 86/942 (9%) Query: 18 VRERLLAKLSGA--NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFA 75 R L+ + GA + L+ PAG GKT L+S + L + A Sbjct: 21 ERSLLVERARGASLGAGQAVLLRGPAGIGKTKLLSVALDELTPVARTVLTVKCPESGSAA 80 Query: 76 SYLIAAV------------------QQATNGHCAICETMAQKRQYASLTSLFAQL--FIE 115 + + A A+ + S+ L Sbjct: 81 YETVRGLFEPLRLTEDGAESSPLLSGSARLALPALLPDRTDETGPTDTYSVMHGLHWLTA 140 Query: 116 LAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR--VR 173 + L IDD + R + L +++ R + + + Sbjct: 141 GLSADGLVVLAIDDVQWCDEASLRWLGFLLRRAEDLPLLVLMTQRTGHERSRPEVLDEIS 200 Query: 174 DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNT 233 D L + T + + ++AA S++ + G +Q + R Sbjct: 201 DPLSCLVVDLPPLTTEAVGEMLHRAFDRELDAAFSAKCAEITGGNPFLVQRVVSRLR--- 257 Query: 234 HSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG--E 291 + D + +LD + A+L I + G Sbjct: 258 GDELSPGAEQTALLDELGWDVVARSLLDRLPRDAYAVATAIAVLGGETIETIAALAGTQP 317 Query: 292 ENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW 351 +E + L L G + H L + + A E + AA Sbjct: 318 GPAGAAVEILRANDLLL----GDGLDY-AHDLIRSAV---LDTTSADERVALRERAARLL 369 Query: 352 MAQGFPSEAIHH---ALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLEN 408 G P+E + L A + +LL A S + + L ++ Sbjct: 370 NDSGRPAEEVAVQLMLLPGDPAPWMVGVLLTAAESAEHRGAPAAAAHYLSQALKHDP-DD 428 Query: 409 PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA 468 L+ A ++ L A + D R AL + N E Sbjct: 429 VTLLAALARVLGQT-EPTRALEYLEHALGLVHDPRTRAPLVVQYALTSLEVQNSLRAFEL 487 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTR---SLALMQQTEQMARQHDVWH 525 A++ A L E + L + ++ Sbjct: 488 VDEVIDAIDAEDGAENTPADRALRTLVEFAYLISGLDEKSTVRRVGRRFRDYVPPQGDTA 547 Query: 526 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR 585 L S + QG E A Q + + + V + L+ + Sbjct: 548 EERQLLGMLSSLGTFQG-----RPATEVAAQAEKVLRIGDVAPGGWAVLGASLSLYLADQ 602 Query: 586 LDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 644 +D A + + IE + + G++ A S +++ + Sbjct: 603 IDPALDALTALIEHAQRTGEAWTHTLGRSTRAEVYHWAGNVSEALSDAQLSFDVVLQESW 662 Query: 645 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW-RNIARAQILLGE 703 + + + G+ A A L +P + AR + LG+ Sbjct: 663 APNVVMPQTAL-ASALIRRGEPARALEVLDLITRPRLDRFTLEYHWYVMARARGRAALGD 721 Query: 704 FEPAEIVLEELNENARSLR-LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 E A ++ L + + GR + ++ + +R G Sbjct: 722 LEGALTYFYRCADSLAEGDISNPVLAPWWFDAADVLAELGRPHEGLDLIERVEESVHRWG 781 Query: 763 FISHF--------------------------------VIEGEAMAQQLRQLIQLNTLPEL 790 E L + + E Sbjct: 782 TTRALGMLRMARGVLTAGDAGIDLLTDAVHTLADSPGRWEQARAEYLLGRRLYRRGDGEG 841 Query: 791 EQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSG 850 + R +R + + + L+ E +V +G Sbjct: 842 ARERLRRSIDLAVLCGDQLQLNQSLPALSEAGGRLRRSTASPADTLSGSERRVAQQAIAG 901 Query: 851 YSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 +N +IA L + T++ H+ ++Y+KLG+ RQD + ++ Sbjct: 902 ATNREIAESLFLTQRTVEFHLTSVYRKLGIRGRQDLARVLRK 943 >UniRef50_C4DRX9 Transcriptional regulator, luxR family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DRX9_9ACTO Length = 900 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 153/915 (16%), Positives = 258/915 (28%), Gaps = 80/915 (8%) Query: 22 LLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDN-QQERFASYLIA 80 L A S +ALI AG GK+ L+S++AA + +A Sbjct: 22 LAAFRSAGAAPGVALIAGEAGIGKSRLVSEFAASLGGGARVVTGGCTQLDDGLAYAPFVA 81 Query: 81 AVQQATNGHCAICETMAQKRQYASLTSLFAQLFIE----------------LAEWHSPLY 124 ++ A L F +L A PL Sbjct: 82 VLRALVRELGAERVAEILPGPGRELARWFPELGAAQSGDKLRLYEEILTLVEAAASKPLV 141 Query: 125 LVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQL 184 +VI+D H + LV R+ L + +L Sbjct: 142 VVIEDLHWADAATAELLGFLARNVNRPGILLVATYRDTEPATGPLLSELRRGGRTTQLRL 201 Query: 185 -AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 T E + L E + RI + G ++ +A S + + Sbjct: 202 GPLTRHEVGRQLAAILGDRPEPDVARRIHERSDGNPLFVEALAQSGQSTPDAE------- 254 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAIL-RSMNDALITRVTGEENGQ--MRLEE 300 L+ V + A R L +++ + AL+ V+G + + Sbjct: 255 -----------LLLHVPRTLPDALRRVLRAASVATGEVAHALLATVSGNDEDALDDLVRP 303 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 + GL L D + H L + + + L E H AE+ G PS+ Sbjct: 304 LVEGGLLLPTEDG---YVFRHDLIRHAVYEDL---LPGERKRFHARYAEALRDNGTPSQL 357 Query: 361 IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKAL----------PWDSLLENPQ 410 H AAG D A + + L+ + L+ Sbjct: 358 ATHTYAAGQLGPALDAAWRAATAACDAYAYHEEARMLERILRLWDAVPDAAERLGLDRVA 417 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER 470 + A Y A + + RE A R ++ D Sbjct: 418 VGTFAAECCMLSGEYARGVDFATEALAIVDEDREPGRAAVLLEHRGRL--RDRTDATGID 475 Query: 471 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 530 + A E L + L + +G+ +L L + ++ R+ + Sbjct: 476 DLRRAHELLASEPDDNARGRLLGLMAMATYRGDADTALELARDALRIGRETGDPTVTVRG 535 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 L+ + L A E+ L + ++ A E+ Sbjct: 536 LLVVGGVTSNLDMLTEALSITEE---------LRDHDLEITVLMYLAMHHARQGDHGESA 586 Query: 591 ASARSGIEVLSSYQPQQQ--LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 +AR G++ + L + L G D A S ++ Sbjct: 587 RAARGGVDRAQRLGLARSRGTHLAGHLAKALLLSGHWDEAASVVDSALA----EGPPPMS 642 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 V + GD AA + L + + A + G+ + AE Sbjct: 643 RDILRAVAGHLAVLRGDTDTAAELAVDLESGDERLGTHLLHRHVFLCLAALSEGDIDRAE 702 Query: 709 IVLEELN-----ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 763 L + + L + + + L L + R Sbjct: 703 EFLSRALSNPALRRVAPVEVRPVLAVGARIRHARLAAGEQPRHDVAELNAELPVHGRLDK 762 Query: 764 ISHFVIEG---EAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVER 820 H I AQ ++ + A + A + Sbjct: 763 AWHDTIAAMTTGGTAQAWADVVAAWRALDQPYELALSLHIASQVTGNRAQARESAELITA 822 Query: 821 LLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGV 880 L P V TS LT+RE +VL LI G SN QIA +L ++ +T H+ ++ KLG Sbjct: 823 LGAAPLVTGDGDTSGLTEREHEVLALIVEGLSNRQIAAKLYISPSTAGVHVSHILAKLGA 882 Query: 881 AHRQDAVQHAQQLLK 895 A R +A A + Sbjct: 883 ATRTEAATIAHKRGL 897 >UniRef50_C1B102 Putative LuxR family transcriptional regulator n=2 Tax=Rhodococcus RepID=C1B102_RHOOB Length = 903 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 122/886 (13%), Positives = 251/886 (28%), Gaps = 67/886 (7%) Query: 43 YGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQY 102 GKTTL+ + A F++ G A Sbjct: 45 IGKTTLVEHFLAAHP------------DLPAFSAVCAPWASSRLFGVAEQLLGAAVTSPD 92 Query: 103 ASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNL 162 + + SP +V+DD H + + ++V + Sbjct: 93 PLDVAREFVTAVGPRAGDSPFVVVVDDAHWADLASLQSLTSAVQLLGRPAVIVLVTNPEP 152 Query: 163 PQLGIAN-LRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATA 221 P A+ L + ++ + +A+ + + ++ +G Sbjct: 153 PDGVRADVLDLLERHSRHRIRVRPLDVSDARALASSLAHVDLPTPVAHQLVQHTAGNPRH 212 Query: 222 LQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAIL-RSM 280 L + ++ + A+ + L + +R + +AIL Sbjct: 213 LTQLLQEVDPVAWGHWQAVLPVPHTFAAKVRSLLCES-----SPQSRALVEAAAILAGDP 267 Query: 281 NDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYH-PLFGNFLRQRCQWELAAE 339 A + G E+ L+E+ R GL + PL + + Sbjct: 268 RFADAAALAGIEHPVEALDELHRAGLLTAGEHRGVTVLTFPSPLTRAAVYRSL---GPIR 324 Query: 340 LPEIHRAAAESWMAQGFPSEAIHHALA-------------------AGDALMLRDILLNH 380 L ++H AA +G + A G + D L+ Sbjct: 325 LRDLHDHAARIVEDEGRRLDHRAAAAPFADPALADELDSYSASRATVGAWSAVADALIKS 384 Query: 381 AWSLFNHSELSL--------------LEESLKALPW-DSLLENPQLVLLQAWLMQSQHRY 425 + + E L ++L P +S E+P + +L + R Sbjct: 385 SRLTADRGEREHRLIRAVDALLGTGNLSQALAFAPEIESFPESPLRDAVLGYLAIQRGRP 444 Query: 426 GEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY 485 E + LL ++ + A R ++ + + + A+ + Sbjct: 445 AEADALLTQSWTACDPETDPATAALICQRRVLDSLARWHGPDLVEWGRRAVALVDSADPS 504 Query: 486 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ 545 + + + +++G L G + + A ++ + + + + + + A + Sbjct: 505 A-VESAAIMGLGLAATGRIAEARAAYDT---LSAKIALGAQSQRFDMARGWLDLALDDPE 560 Query: 546 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 605 +A + E A ++ + R Q A R+ ++ + Sbjct: 561 SARQELESAVPTAFRMGSTRISLWAQAWLARTQFALGDWNGAIATVD-RAAHQLEDATLD 619 Query: 606 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 665 + Q RG+ A L + S A Sbjct: 620 LLRPLVHWTGAQTHALRGNWPAAHEHLRLAAASSHDYPMMFIPSSLARAQCAEVEADYAA 679 Query: 666 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 725 A L E + A A ++ G + A+ L E A S Sbjct: 680 VIRALEPLTRLEPREGVDEPGFWQWPDVYANALVMAGHVDDADAFLTPHEERAAERGHRS 739 Query: 726 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLN 785 + R ++ G A+ V +AL + A Q LR+ + Sbjct: 740 AMARLGYARGRIAGARGDIDTARDVFENALTQLDTLPLPYDRARVNFAYGQTLRRAGKRR 799 Query: 786 TLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLG 845 + Q + + + + + LT +E V Sbjct: 800 EADAVMQAAREGYSALGATSYVQRCDRELKAGGLNVKRSRFT-----LEELTPQERAVTE 854 Query: 846 LIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 L+ G SN++ AGEL ++ T++ H+ +Y KLG+ R + + Sbjct: 855 LVAGGASNKEAAGELFLSVKTVQYHLTRVYAKLGIRSRSELAAQFR 900 >UniRef50_UPI0001AF081C putative LuxR family transcriptional regulator n=2 Tax=Streptomyces RepID=UPI0001AF081C Length = 937 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 138/921 (14%), Positives = 264/921 (28%), Gaps = 69/921 (7%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWAA------GKNDIGWYSLDEGDNQQERFASYLIA 80 + A L L+ PAG GKT L+ Q + + + + Sbjct: 28 ARAGAPALVLVEGPAGIGKTALVEQALTAWRGRTEGSAPRVLRVTGVAWESDLPLGVADQ 87 Query: 81 AVQQATNGHC-AICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 V+ NG TS A+ PL +++DD H + Sbjct: 88 LVRACGNGTGNGTFLPDPTAPDAVLGTSRILLRQWTTAQETEPLVVIVDDAHWADAESLR 147 Query: 140 ESMRFFIRHQPENLTLVVLSRNLP--------------QLGIANLRVRDQLLEIGSQQLA 185 R E + +++++R+ P + L D + + Sbjct: 148 AIRSTVRRMSNERVLVLLIARDEPYELYDMCRAHEDLPVSALRTLEFLDGCQDAAVRPGP 207 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAG 245 T ++ + ++ + +C G L + Sbjct: 208 LTAEDVRTLAREVHGLTLDLPAARHLCRHTRGNPRHLTQLLREL-----PRETWHDWRPE 262 Query: 246 INASHLSDYLVDEVLDNVDLATRHFLLKSAIL-RSMNDALITRVTGEENGQMRLEEIERQ 304 + A V L + R + ++L + A T + G + ++E Sbjct: 263 LPAPTRYAAAVRHRLAQCGESARRLVQACSVLGDDASLAEATELAGVADALPAVDEARAA 322 Query: 305 GLFLQRMDDTGEWFCY-HPLFGNF------------LRQRCQWELAAELPEIHRAAAESW 351 GL +D + HPL L R A + A + Sbjct: 323 GLLTATIDPGRAQLSFTHPLVRAAVLTGIPLTHRAELHHRAVEVTADRGSRLAHRVAATS 382 Query: 352 MAQGFPSEAIHHALA----AGDALMLRDILLNHAW-SLFNHSELSLLEESLKAL------ 400 A ++ + A AG+ + D L+ S L ++ A+ Sbjct: 383 TADDALADELDAYAAERASAGEWSAVADTLVRAGRLSTVRAVREDRLLRAVDAMIGAGDV 442 Query: 401 --------PWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFN 452 +S + + +L + R E + LA+A + R + A Sbjct: 443 PQATAFAAELESFPADILRGAVLGYLAIMRGRPAEADAFLAQAWERCESARHTDLMARIC 502 Query: 453 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQ 512 R A+ + A+ A+E P + I + +VLG L G +LA Sbjct: 503 QRRVLHALGRFDGRALVAWARRAVELADPDDPSA-IESQAVLGLGLAATGRADEALAAY- 560 Query: 513 QTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 572 E A + + + + + A + A E A ++ + Sbjct: 561 --ETAAAKLPGGAQSQRFQLGRGWVDIALDAPEDARRRLEAAVPTGYRMGSTRISLWAQG 618 Query: 573 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQL 632 R Q + E R+ + + + Q RGD + A + Sbjct: 619 WLARTQFALGAW-PEALETVQRAAVHLAEVRIELCRPLVHWTGAQIRALRGDWEAAEHHV 677 Query: 633 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 692 + + A A L H + Sbjct: 678 GEAHAAPHHYEVMLVPSCLARAQVAEARGDYERVVEALVPLVHLPQRLSVGEPGFWSWPD 737 Query: 693 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 752 A A ++ G + A+ L + A S + R L +L G A++ Sbjct: 738 VYANALVMTGRLDEADTFLAPHEDLAARRVRRSAMARLGLARGRLTAARGDIDTARKEFE 797 Query: 753 DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAH 812 AL A Q LR+ + + ++ + + + Sbjct: 798 QALAHLEHLPLPYDRARVNFAYGQTLRRAGKRREADTVLKNARDAYAALGARTYVERCDR 857 Query: 813 FDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIR 872 + + LT +E V L+ +G +N+Q A EL ++ T++ H+ Sbjct: 858 ELKA-----GGLHTARLTPGLARLTPQEQAVARLVANGATNQQAALELFISVKTVQYHLT 912 Query: 873 NLYQKLGVAHRQDAVQHAQQL 893 ++Y KLG+ R + +++ Sbjct: 913 HVYSKLGIRSRSELAARFREM 933 >UniRef50_A1UB03 Regulatory protein, LuxR n=4 Tax=Mycobacterium RepID=A1UB03_MYCSK Length = 921 Score = 194 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 154/940 (16%), Positives = 262/940 (27%), Gaps = 98/940 (10%) Query: 18 VRERLLAKLSGANNFRL-ALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFAS 76 R + L+ + L+ AG GKT L G+ L Q E + Sbjct: 10 GRSAVAEFLAAVADGPSGLLLEGEAGIGKTRLWLTAIEEARRRGYRVLSARAGQAETSLA 69 Query: 77 YLIAA----------------VQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 Y + A VQ+ I + + + +E+ Sbjct: 70 YSVVADLLEDVDAAVTEDLPEVQRLALDRLLIRGDADGPQTDHRVAAAAVLNTVEILCRD 129 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLS-RNLPQLGIANLRVRDQLLEI 179 PL L IDD + + E + R + L++ P L++ Sbjct: 130 QPLILAIDDVQWV-DVCSREVIGLVARRLDCQVGLLLTELSEEPGHHTEWLQLSHPDRLH 188 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 T RL RI + G +A + + T + + Sbjct: 189 RHHVAPLTLGGLHAMLSERLGRSFPRPTLIRIAETSGGNPLYALELARAISEQTAAGEPA 248 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG--EENGQMR 297 +V + +D R LL +A + + L+ T E+ Sbjct: 249 LPPSLAD--------VVRRRIQGIDEVVRDVLLAAACVAAPTVDLVASATEKTPEDVLEL 300 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 LE E QGL + HPL + A +HR A P Sbjct: 301 LEAAEDQGLVEI---EGTTIRFAHPLLARGVYSEA---GPARRRHMHRRLAGVIS---QP 351 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 + H A + + A + + + + L + L LQA Sbjct: 352 EQKARHLALAATSQDDDTLAALDAAADAARARGAPAAAAELLEFAMRLGGDTDLRRLQAA 411 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 G+ + + + A + A + ++ + +L AL Sbjct: 412 AHYFT--AGDSWRAGELLTATLPRMPHGPLRAMASMQLAGIVMDRNDFQRGLQLLDEALA 469 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 + ++ +LG G+ SL Q+ ++A Q +L + Sbjct: 470 DSES-DQTLQVYCLLMLGMAQTNTGDHEDSLRNAQRAVEIAEQTGQDQLIGQALAVRVFT 528 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 F GF + Q L E ++P+ I + RLDEA A+ + Sbjct: 529 RFVFGFGLDDRDMQR---ALDYEDPDAEVPLPFRARAIAGLIDSWTGRLDEAYATMQDLR 585 Query: 598 EV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 L + L L RG LD A + + + A +R Sbjct: 586 RGSLDRGADRDLLALSVSGTLVELWRGRLDEAATYADDAVERAEQVGGDNS-RLVALGMR 644 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR------------------------ 692 I G AA + W Sbjct: 645 AIVGGYAGRVRAARADAETALAMARRSGVMRMTWWPLGVLVFLEVSLGNYSQALTTLEPL 704 Query: 693 -------------------NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 733 + A + +G A+ ++E ++ + L Sbjct: 705 LADYLATPGNEIFGSFFVPDAVEALVAVGRHTDAQSLIERFEDDGQRLDRPWLSAVAGRG 764 Query: 734 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 793 G A + A+ R E A L QL + E Sbjct: 765 RAMELAARGDLDGAVAAVTTAMAHHERV----PMPFETARTALLLGQLQRRQRRKEAAAA 820 Query: 794 RAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSN 853 + LR +A + + R+ P R LT E +V L SG SN Sbjct: 821 TLREALRTFEDIGTVLWAQRARDELARVNVRP-----TRDQSLTPSERRVAELAASGVSN 875 Query: 854 EQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 IA L ++ T++ ++ +Y+KLGV R + ++L Sbjct: 876 RDIAATLFISIKTVEANLGRVYRKLGVRGRVALARRLEEL 915 >UniRef50_A4X8K3 Regulatory protein, LuxR n=1 Tax=Salinispora tropica CNB-440 RepID=A4X8K3_SALTO Length = 943 Score = 192 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 146/932 (15%), Positives = 250/932 (26%), Gaps = 86/932 (9%) Query: 15 HTVVRERLLAKLSGA------NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGD 68 V R R L L R+ALI+ P GKT L+ A + G L Sbjct: 2 GFVERSRELDILRDLYAVCATGRGRVALISGPGATGKTELLRAVADHVDTAGGLVLSAAC 61 Query: 69 NQQERFASYLI--------AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA--E 118 ++ ER + A + A + + + +EL Sbjct: 62 SRAERMLPAAAMGQLFNSVPLPTEVMRRIGAFIDLGAATTEGDADIRAVHVMCVELLDIA 121 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQL--GIANLRVRDQL 176 PL L++DD + + R + +V+ PQ + Q Sbjct: 122 RERPLVLLVDDVEFADETTLRTLLYLQRRLTAAQILVVLAESPQPQPFNPEFRAELTRQA 181 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 Q + + + G L + R + Sbjct: 182 CFCNIQLSPLSEAGVAEVLRGWTDDETALVLAPAYHRISGGNPLLLHALGEDRRAAGPTD 241 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSM-NDALITRVTGEENG- 294 A + L+ L D A A+L L+ R+ Sbjct: 242 ATEAIVGDQFRQAVLA------CLRRWDPAILETAHGLALLDDFATPTLLARLLDSRPAR 295 Query: 295 -QMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMA 353 Q L + GL F HP + L ++H AAE + Sbjct: 296 VQWVLNALTMSGLL------DSGRFR-HPAARAAVLHDL---DPDALSKMHARAAELLHS 345 Query: 354 QGFPSEAIH-HALAAG--DALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ 410 +G P+ AI H LAAG +L + A + ESLK L + + P+ Sbjct: 346 EGAPAPAIGGHLLAAGGLAEPWAIALLQDAATHALAEDRVDDAVESLK-LAHEMCHDAPR 404 Query: 411 LVLLQAWLMQSQHRYGEVN--TLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEA 468 L A L Q R L + ++ HA + + E Sbjct: 405 RAALTAMLADCQWRVSPAAVSQHLQSQRNALRAGHLSERHAAGLLRYQLWHGHLEDAQET 464 Query: 469 ERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 528 R + A +L L + +AR + + Sbjct: 465 LRHLREARHQLDATTAAEVDGCADWLRLYFPVAFAGRGAAPGATPALTLARTDGSFGWVT 524 Query: 529 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 588 SL + A + + + + R W + Sbjct: 525 PSLTAVLTEGVTDEVIARAEQALGSHMLVDVGPESALCALQTLVYAGRTDQAVHWCDV-- 582 Query: 589 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW 648 G E S + +L +GDL + + + + Sbjct: 583 ------LGAEAGSRGANTWHAILSDVRSHIALRQGDLPLGERFAHEALDAMSPHNWGVAI 636 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 708 S + ++ A LR+ + F R + G A Sbjct: 637 GSPLSN-MLLAKIGMDKLDEAKALLRYVIPDAMRDTWFWPLYLRARGHLHLAGGRVHAAL 695 Query: 709 IVLEELNENARSLRL-MSDLNRNLLLLNQLYWQAGRKSDAQ------------------- 748 E + A + + L L Q+Y ++GR A+ Sbjct: 696 ADFETCGQLATEWGMDLPTLLPWRGDLAQVYLRSGRPDMARKIVTEQLSRPDAQNARTRG 755 Query: 749 ---RVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQH 805 R+L AL + R + + + + + L L R + + Sbjct: 756 ISLRLLGSALDVKQRVNTLRQAANLLQESGDRFQLALALTALSRAHYGRGEFNTSRVVAR 815 Query: 806 HRHKFA-----------HFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNE 854 + A PE S L+ E +V L G++N Sbjct: 816 SATQLAKDIQAQALCRRLLPSGEAAGDDEADAPPEHEEMSRLSDAEQRVATLAALGHTNR 875 Query: 855 QIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 +I +L + +T++ H+ +Y+KL V R + Sbjct: 876 EIGKKLYITVSTVEQHLTRVYRKLNVRRRTEL 907 >UniRef50_A9AYH6 Transcriptional activator domain n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYH6_HERA2 Length = 1064 Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 136/800 (17%), Positives = 255/800 (31%), Gaps = 56/800 (7%) Query: 10 PVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDN 69 P D + R RL A+L + RL ++ + AGYGKTT ++QW W Sbjct: 22 PQLNDDLIQRPRLQAQLEACWSCRLTMVVAAAGYGKTTALAQWMQQTLGGDWLWYGLHSP 81 Query: 70 QQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDD 129 + L++++ +A Q + SL + LV DD Sbjct: 82 TEADQLQRLLSSLTKARF------------PQINPINSLADLFDCWATLAPRRIALVFDD 129 Query: 130 YHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQ 189 + + R P NL L++ SR LPQL A L R Q ++ + +L F+ Sbjct: 130 CQHLQ-ASAWRLLNELARFAPTNLHLILSSRQLPQLDWAGLAARGQYRQLTAAELRFSQA 188 Query: 190 EAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINAS 249 E ++ ++ +GW L+L R L Sbjct: 189 ELQELL-----PTQSPSQRQAAWQATNGWPAGLRL---------------WRALPSGYQG 228 Query: 250 HLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQ 309 +SD+L +VL + A R +A+L N A++T + + + LF+ Sbjct: 229 TVSDFLAQDVLGQLPEAVRRTAQFAALLPFFNQAVLTAMAAPDPA-----SLWHYNLFVL 283 Query: 310 RMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGD 369 D EW+ + P + LRQ+ AE+ ++ AA + QG + A+ G Sbjct: 284 P--DHAEWWRFEPFWLEVLRQQ----PLAEITQLLAQAATWFEQQGHLAAALDVWCRLGQ 337 Query: 370 ALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVN 429 + + L +H L + + + L+ LP L L L +H G Sbjct: 338 WAQVAEQLKHHGLQLLAQHQP--VLQWLQQLPATERQTAELLHLD--GLALREHDPGLAA 393 Query: 430 TLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIV 489 LA+A + + + + + G+ +A+ + + + R Sbjct: 394 QTLAQAAQRYRAEQRYAEAFQVVGEQCLIYFWQGDEQALIAVARESFSL--KSFVWYRQR 451 Query: 490 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 549 + +L + + R + + + +A+ + + + + + Sbjct: 452 RDLLKFPLLLFQIKRGRYIKALATAQSLAQSELPFFWRWVAACVVGGLYTILTLPNEGIQ 511 Query: 550 TQEKAFQLINEQHLEQLPMHEF-LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ-Q 607 E Q Q + M L+ A A+ A + Y + Sbjct: 512 WLEVWLQHPQVQAEPAMRMSLLDLLATCLMSRAAPDDRIAAQDLADQASRLSERYGVRLT 571 Query: 608 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 667 +LQ + +L D + +L L + S + +R W G+ Sbjct: 572 RLQTRGTKLGLALLEADRPTTERLIQQLL-LPSDEPLPSIMRNRLLALRAFAWASLGEIK 630 Query: 668 AAANWLRHTAKPEFANNHFL---QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 724 A + + + ++ W +A+A GE++ A LE + + Sbjct: 631 LAQHDATLSERGLIRDDALYGADPRMWLMLAQAWFCCGEYQRALAALERAKPLIEAAQSP 690 Query: 725 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQL 784 R L+ WQ + G + ++ Sbjct: 691 ILRLRAGLVQLASRWQLQPSPQLIAEATTIWRDYLSDGDRHMNATPLHLTTLLVELGLRT 750 Query: 785 NTLPELEQHRAQRILREINQ 804 P+ R + Sbjct: 751 GIAPQRIAQFLAERDRAALE 770 >UniRef50_A4TDA0 Regulatory protein, LuxR n=2 Tax=Mycobacterium RepID=A4TDA0_MYCGI Length = 929 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 141/905 (15%), Positives = 253/905 (27%), Gaps = 71/905 (7%) Query: 35 ALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAA------------- 81 +I AG GKTTL G+ L Q E ++ A Sbjct: 40 LIIEGDAGIGKTTLWLSLLQTARMRGFQVLTARVGQAESVMAFAALADLLGAVSDEHFAA 99 Query: 82 ---VQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVI 138 +Q+ + + + + + +P+ + IDD + + Sbjct: 100 LPPLQRLALDRVLLRAGADGPATDQRVVAAGFVSLLHILAADAPVLIAIDDVQWL-DASS 158 Query: 139 HESMRFFIRHQPENLTLVVLSRNLPQLGIAN--LRVRDQLLEIGSQQLAFTHQEAKQFFD 196 ++ F +R +VV R +P G L + I Sbjct: 159 RTAIEFAVRRLKGAFGVVVTERCVPGDGTTAGWLTLERPDGLIRVSVPPMDAGRLHALIS 218 Query: 197 CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLV 256 RL + RI + G +A + + S + L A + + Sbjct: 219 HRLGRTLTRPVVLRIAEMSGGNPFYALELAHTHVNSGDSPPAAEPPLPATLADVVRRRV- 277 Query: 257 DEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGE 316 +D ATR LL A + L+ R G ++ + + ++ Sbjct: 278 ----GLLDDATRTLLLGVACVADPTVELLARAHGASTDEITAGLERAEAAGIVVLEGNRV 333 Query: 317 WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDI 376 F HPL + +HRA A + + A ++GD + Sbjct: 334 RFT-HPLLAGGVYTDA---GPTARRAMHRAIASVESHPELRARHLALAASSGD-DEIFAA 388 Query: 377 LLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAE 436 L A S + E + L +P L A + L Sbjct: 389 LDQAADSARARGAPAAAAELMD-LALGLGAHDPMRRLKAAENHFLAGDTAKAAAALGEV- 446 Query: 437 HEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGE 496 I + A +L A V + D +A L + AL++ ++ L Sbjct: 447 ---GSIEPPILRAMATSLLATVRMYDNEHRQAVDLLRSALDDAAD-NVPVQVQVLLRLSF 502 Query: 497 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 556 L+ GEL + + ++A + +L + F G +A + Sbjct: 503 ALNSIGELDDARRYARDAVKLAEELGFPGATSAALAWAVHVDFQCGR-GLDETALARAMK 561 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAML 615 L + + V A RL++A + V L + L Sbjct: 562 LYDSTFDVPIIFRAPFVHALAMS--WTGRLEQAHQELTAVRGVCLERGAESDMMAIAGFL 619 Query: 616 IQCSLARGD-LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 674 L RG D +E G I + + + D A A Sbjct: 620 AINHLWRGQITDAEAEAAEAVERAEQLGGDDVLIIPMTVRGAIAAYAGRVDDARADARWV 679 Query: 675 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 734 A +H + + LG A L++ A +L Sbjct: 680 LAAVRNRKASHIADWPGMTLCFLEESLGNHREALAALDDSFIAAGPPTTELMYAWHLPDA 739 Query: 735 NQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHR 794 + GR DA +L AL+ G L E HR Sbjct: 740 IEAMVGVGRLDDA-EILTAALERNGVEHDRRWMRAVGARCRAMLLAAHGDVAAAEQMAHR 798 Query: 795 AQRILREINQHHRHKFAHFD------------------------------ENFVERLLNH 824 A + + +R + Sbjct: 799 AISEHDHLPMPFERARTRLLLGQLQRRLRQKATAAKNLTDALHTFEQLGTPLWAQRARSE 858 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 + LT E +V + +G +N+ IA + +++ T++ ++ +Y+KLG++ R Sbjct: 859 LARAVVAPAEGLTPSEQKVAEMAAAGATNKDIAAAMFISSKTVEHNLTRIYRKLGISSRA 918 Query: 885 DAVQH 889 + + Sbjct: 919 ELGRR 923 >UniRef50_C4DK73 Transcriptional regulator, luxR family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DK73_9ACTO Length = 908 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 127/921 (13%), Positives = 252/921 (27%), Gaps = 82/921 (8%) Query: 20 ERLLAKLSGANNFR--LALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASY 77 + L A R ++ AG GK+ L+ +D + + E ++ Sbjct: 10 AHIERLLDEARQGRSQALIVRGEAGIGKSALLGHALTAADDFRQLRAIGIEAESELPYAH 69 Query: 78 LIAAVQQAT-----------NGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 L + + + + L + P+ V Sbjct: 70 LHMLLHPVLHRIDALPKRQASALRGSLGLSDETSGDRFMIGLAVLTLLAEIADEGPVLCV 129 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +DD H I + R + E + ++ +R+ + I L+ Sbjct: 130 VDDAHWIDRESADALLFAARRLEAEGVVVLFGARDQHAPAFPS-------HGIAELDLSN 182 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 EA +S + ++ + G AL+ + ++ R+ + Sbjct: 183 LDDEAAAQLLAEYASDLSEPARRQVIAEAVGNPLALRELPVAQREGQLTLDPYRVSALPT 242 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMN-DALITRVTGEENGQMRLEEIERQG 305 ++ + + + + +TR LL +A S + ++ T + LE ER+ Sbjct: 243 HSRIQRTF--ADRIATLPDSTRTLLLVAAAHGSCDAPPILAAATKLGSTMEDLELAERKQ 300 Query: 306 LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHAL 365 L D F HPL + Q AE +H A AE+ + H Sbjct: 301 LLSMV--DGHLCFR-HPLVRSATYQEAST---AERITVHTALAEAITSPAHAERRAWHLA 354 Query: 366 AA--GDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQH 423 AA G + L A + + + + + S + + Q + Sbjct: 355 AAATGPDEKIAAALEEVACAGQARGGRNAVASAYERSAQLSPDPDEKARRFQ-AAAAAAL 413 Query: 424 RYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW 483 G+++ A A + + + + A VA GN + A E+ P Sbjct: 414 AAGQLDRADALAAEAASNTTDPKLLGRLAHINAHVAYGHGNTMASYHGWVSAAREVAPHA 473 Query: 484 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 543 E G + + M ++ A+ + + G Sbjct: 474 NLQASYMLFHAVEAAWMAGNFAAVDEVAELATSMKLRNAPRVLAMARVAH--GLGDRHGD 531 Query: 544 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 603 + + H L + A A S + + Sbjct: 532 VADGVAALRELIATTGRSHEPTLQDRATI----AWWHLLLGDHTTALDLTASLVADCRAT 587 Query: 604 QPQQQLQ-CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 662 L LA+ + L G +A + I + Sbjct: 588 GAMGVLPRALALQAKAQLYSGHHRDAAASATEALRTAEESGNQPIMIGVPLSTLAYLAAI 647 Query: 663 TGDKAAAANWL----------------------------------RHTAKPEFANNHFLQ 688 GD+ L R N + Sbjct: 648 GGDEKRCLELLSKLPGADDGRGILLLDGALGVLDLTLGRNESTVDRLAELANRRNRMDML 707 Query: 689 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 748 ++ A G+ E A A + + G ++A+ Sbjct: 708 PTVTDLVEAASRSGQPERAREPFGWFTAFAEHIDQPWAMALVERGRA----LLGPDAEAE 763 Query: 749 RVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRH 808 + + A++ N+ G E + ++ + + + L + Sbjct: 764 QHFIRAVEFHNQPGDR---PFERARTELLYGEWLRRSRRRSDARGHLRSALDTFERLGVT 820 Query: 809 KFAHFDENFVERLLN--HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATT 866 +A + + P S LT +E QV+ L +G +N I +L ++ T Sbjct: 821 PWAERARTELRAAGDSQGPAALRPEALSQLTPQELQVVRLAATGMTNRDIGAQLFLSPRT 880 Query: 867 IKTHIRNLYQKLGVAHRQDAV 887 + H+ Y KL +A R + Sbjct: 881 VGYHLYKAYPKLNIASRGELA 901 >UniRef50_D1A6G3 Transcriptional regulator, LuxR family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A6G3_THECD Length = 954 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 156/974 (16%), Positives = 265/974 (27%), Gaps = 115/974 (11%) Query: 11 VRLDHTVVRERLLAKLSGANN--FRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEG- 67 V R L +L A LI AG GKT L+ ++A G L G Sbjct: 5 SVSPVLVGRSTELERLQEALAEAPGAMLIGGEAGVGKTRLLREFAERAGAGGAQVLVGGC 64 Query: 68 --------------------------DNQQERFASYLIAAVQQATNGHCAICETMAQKRQ 101 D A + + A + Sbjct: 65 LELGAGGLPFAPFTAVLRALVRRIGIDGVAGLLPRSATAGLARLLPEFGEPESDTASGEE 124 Query: 102 YASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRN 161 A L L L LAE +P LVI+D H L +V R Sbjct: 125 RARLFELVLTLLERLAE-RAPTVLVIEDVHWADRSTRDLLAFLARNVSAAPLLVVATYRT 183 Query: 162 LPQLGIANLR-----VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVS 216 LR + + + E + L A R+ + Sbjct: 184 DELHRTHPLRPLLAELTRVERVRRMELTRLSRGEVGELVRGLLEGEPPAGLVERVYERSE 243 Query: 217 GWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAI 276 G ++ + + LA + + TR L ++ Sbjct: 244 GNPLFVEALLADDGERALPESLRDLLLAAV--------------QKLPEETRETLRVASA 289 Query: 277 LR-SMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWE 335 + AL+ V+G ++ + + +D G F H L + Sbjct: 290 GGTRIEHALLAAVSGLDDAALARVLRPAVEANVLVVDGDGYAFR-HALIREAVHDDL--- 345 Query: 336 LAAELPEIHRAAAESWMAQGFPSEAI-------HHALAAGDALMLRDILLNHAWSLFNHS 388 L E ++H AE+ + HH +A + A + Sbjct: 346 LPGEHTQLHARYAEALERDPALVPSGRLWVLLSHHWYSAHEPTWALVSAWRAANDARKAA 405 Query: 389 ELSLLEESLKAL----------PWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHE 438 + L + + +++ + + L A E Sbjct: 406 AYAEQLAMLSRVLELWYKVPDAAARIGARHVEVLEQATLAAELAGEHERGVKLATAALRE 465 Query: 439 IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVL 498 + +D A R +++ G P+ + L A R A + L Sbjct: 466 AEAAGDDARCAALLEQRGRMSYELGRPEYIDDLRAAAARLPADPPSAVRARALASLAHYA 525 Query: 499 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ------------------------ 534 + +LA +++ +AR+ + +L+ Sbjct: 526 RPRNNDGEALAAARESLALARRIGDTAAEINALLTLFCVGIDYSGGLAELEEVERIVQRS 585 Query: 535 -------------SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 581 S L G A E + +L E L + +L A+ L Sbjct: 586 GERHPLLRVAVLRSHFLEGAGRHAEAAEVARQGVELAREVGLSRT-HGAWLSVNLAEPLV 644 Query: 582 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 641 + R DEA + + ++ + L LA + +LARGDL A + L ++ Sbjct: 645 SLGRWDEALSCLKQALDQDPMAVVRTSLHVLA--GEVALARGDLAEAEAHLGPAGDIKWR 702 Query: 642 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 701 + + G+ AA + + ARA Sbjct: 703 EAQDYFAMLRLESALRLAQGRIGEALAAVENVLECPGLSDDARYAWPVLVIG-ARACGEW 761 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 + A +LE + + A L + L L + A R Sbjct: 762 SDRAAAAAMLERIEKRAAELAVQGPLQEAHRLTFEAQLARAHGRRDLAAWDAAAAAWERI 821 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 G A+ + + Q R + +E Sbjct: 822 GQPFARARALAEAAEAALAGGERDLAARRLQEAEALAGRLRAAPLARRL---EETARRGR 878 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 LN LT RE +VL L+ G +N +IA L ++A T+ H+ N+ KL V Sbjct: 879 LNGTAPSAARSPYGLTPRELEVLRLVAQGRTNREIAEVLFISAKTVSVHVSNILAKLQVP 938 Query: 882 HRQDAVQHAQQLLK 895 R +A A +L Sbjct: 939 TRGEAAATAHRLGL 952 >UniRef50_UPI0001C311F3 transcriptional regulator, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311F3 Length = 951 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 148/933 (15%), Positives = 251/933 (26%), Gaps = 86/933 (9%) Query: 32 FRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLI------------ 79 + ++ +PAG GKT+L+ A G+ L ER +Y Sbjct: 31 GGVTIVEAPAGLGKTSLLRAAAELAVADGFTCLRARATVLERDFAYGCVRQLLEPTVARA 90 Query: 80 -----------AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVID 128 AA Q A A + + PL L++D Sbjct: 91 AEERRAALFTGAAGQAAPLFAPVAGGETASAVGGDAAMLHGLYWLLADLAEEGPLALLVD 150 Query: 129 DYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTH 188 D H + + R L +V+ SR + R+ + + Sbjct: 151 DAHWADSDSLRFLAYLAPRLDGLALAVVLGSRPGEGDTVELARLAAAPEATTVRPRPLSE 210 Query: 189 QEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINA 248 + RL P+ A ++ + G ++ + + A Sbjct: 211 AATATLCERRLGGPVAPAFAAACREATGGNPFYVEALLRETAEAGLPAGGDGAARVARLG 270 Query: 249 SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMND---ALITRVTGEENGQMRLEEIERQG 305 + V L A + A+L A GE++ + + G Sbjct: 271 PSVVAQAVLLRLSEQPPAATALVRALAVLGDGAAVGEAAQLAELGEQDAANAADLLVALG 330 Query: 306 LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHAL 365 L HP+ + A A A A A Sbjct: 331 LLQAAPRLE----FAHPIVREAVYADIGASARAVAHARAAAVLAERGAADERIAAQVAAA 386 Query: 366 AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW-------- 417 +LL A + L+ + E + +L Sbjct: 387 EPAGDAARVALLLRVADDALARGAPAAAGAWLRRALAEPPREPQRTEVLLGLGLAEHRVG 446 Query: 418 ------------------------------LMQSQHRYGEVNTLLARAEHEIKDIREDTM 447 + L A I+ + Sbjct: 447 APAAVEHLAAASATLNEPAQLATAVRQLANALTVAGEADRAVAALTSAIEVIEPQDRELA 506 Query: 448 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 507 L + R L L G R+V SV + + Sbjct: 507 LLLEAELASHALQASPAAAAPVRRRLERLAVLDGGTARERLVLASVAFQRARAADSADAA 566 Query: 508 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 567 AL++ + + L A L E E+A + +P Sbjct: 567 AALLEGVLRGGLLDAPGLDMVGPFYDVVIGLLATDALDLVAEQLERAL--ADAHVRATIP 624 Query: 568 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ-CLAMLIQCSLARGDLD 626 +L R + + AEA R+ +E+L + L A+L+Q + G+L+ Sbjct: 625 ATAYLTGRRGWVALRRGDVSRAEADGRTAVELLRGHGIGLGLPFATALLVQALVEGGELE 684 Query: 627 NARSQLNRLENLLG-------NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 679 AR + L S+++ A ++ + + AA + Sbjct: 685 QARRASDAAGALADGDPAAGIPPGLTSNFLLEARASLLLASRRPEEALAALREFGRRDEL 744 Query: 680 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 739 N A A LGE + A + E E AR S + L L Sbjct: 745 WGGANPLASRWRARAALALTALGERDEAVALAAEDLERARRWGAASGIGTALRALA---- 800 Query: 740 QAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRIL 799 AG +A L +A+ R + LR+ + ++ + Sbjct: 801 LAGDGGEAAPRLREAVAALERAPARLEHARALVDLGAALRR----GNQRAQARTALEQGV 856 Query: 800 REINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGE 859 + + A + P LT E +V L G SN +IA E Sbjct: 857 ALAARLGARELAERGRTELRAAGGRSSDPHGHGVEQLTAAERRVAELAAGGRSNPEIAQE 916 Query: 860 LEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 L V T++TH+ ++Y+KL VA R D + Sbjct: 917 LFVTRKTVETHLGHVYRKLDVAGRGDLAALLTE 949 >UniRef50_C8SW08 Transcriptional regulator, LuxR family n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SW08_9RHIZ Length = 863 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 141/890 (15%), Positives = 267/890 (30%), Gaps = 50/890 (5%) Query: 20 ERLLAKLSGA--NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASY 77 E L L+ A + +A ++ AG GK+ L+ + A + ++ Sbjct: 11 EHLDGLLAEAMRGHGHVAALSGEAGAGKSALVEAFIADAGERARILRSACEDLSIPDP-- 68 Query: 78 LIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPV 137 + + RQ L LF+ P LVI+D H + Sbjct: 69 -LGPLYDLAREAQWPLPQAIDARQGQRL-PLFSDALAVFESKARPTLLVIEDLHWADDAT 126 Query: 138 IHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDC 197 + R ++ L++ +R +RVR L EI + + Sbjct: 127 LDFIRFLGRRIANTHILLLLTARTD--RSEGQMRVRRALGEIPAGSITRIEVPLLSEAAV 184 Query: 198 RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVD 257 R + + I +G A + + + + A LA Sbjct: 185 RSLAASAGRDGEAIYRATAGNAFFVTELLCADNETMPPASVRDAVLARA----------- 233 Query: 258 EVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEW 317 + + R L ++ DA + +L E GL DD G+ Sbjct: 234 ---ERLSAGARSMLDAVSVFPRRADAWALQGLCGVASAGQLAECVSNGLL----DDLGDA 286 Query: 318 FCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS--EAIHHALAAGDALMLRD 375 + + R + + ++ A + + +G + +HHA+ A + ++R+ Sbjct: 287 YAFRHEIAR--RAIEMTLTTSHRRQFNQRALSALLERGDIATARLVHHAVEASNFEVVRE 344 Query: 376 ILLNHAWSLFNHSELSLLEE----SLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTL 431 + A +L+ E L A+ R + Sbjct: 345 LAPLAAREASRVGAHRDAAGYYEVALRQADGLPAEERAALYEQYAFECHLIGRIDDAIAA 404 Query: 432 LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF-YSRIVA 490 A +D+ ++ A G+ A+ L A+ L +A Sbjct: 405 QEHARKLQRDLGNVLKEGNSLRCLSRFAYLLGDRKTADLLGAQAVALLETAPAGPELAMA 464 Query: 491 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 550 S L ++ L +L+L + ++A D +L L + + Sbjct: 465 YSNLSQLAMLSERLDEALSLGDKAIKLAGLLDRPDIFCHALNNVGSAEQWLD-LASGRQR 523 Query: 551 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQL 609 ++ ++ EQ+ ++ F A + EA + GI + + + Sbjct: 524 LAQSLEIAIEQNFQEHAARAFTNS--ACVEMNQLGYSEARSLLERGINYCVENDLVTWRD 581 Query: 610 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 669 +L Q L +G D A + +LL N + + A GD Sbjct: 582 YMRGVLAQLRLRQGQWDLAEA---EALDLLANDQATALVRYPAVVALARLRVRRGDPGTG 638 Query: 670 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIV-LEELNENARSLRLMSDLN 728 + E + + + LG+ + E + L + E+ R + Sbjct: 639 PLFEEMMRFLERGGELQRLAPYALLMAERAWLGQADTDEALDLIDAAESLSPTRAVFAEL 698 Query: 729 RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLP 788 + G + L G M + + L Sbjct: 699 ACWRQVLVPDCDPGDTTGMAEPYRMLL-----GGDWRGAADLWAGMGASFERGLALMQGD 753 Query: 789 ELEQHRAQRILREINQHHRHKFAHF--DENFVERLLNHPEVPELIRTSPLTQREWQVLGL 846 E Q A I + N V + P ++ LTQR+ +VL L Sbjct: 754 EPAQRSALEIFERLGAGAVAHKVREIMRRNGVNNIARGPRQTTRANSAGLTQRQMEVLQL 813 Query: 847 IYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 I G SN++IA L ++ T+ H+ + KL R +A A+ + Sbjct: 814 IERGLSNKRIAEHLAISPKTVDHHVSAVLGKLDAISRGEATAAARDSGLI 863 >UniRef50_A4FEF8 Large transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FEF8_SACEN Length = 946 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 139/946 (14%), Positives = 263/946 (27%), Gaps = 83/946 (8%) Query: 14 DHTVVRERLLAKLSGAN--NFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQ 71 + R L L A + + AG GKT L+++ + Sbjct: 8 PVLIGRTAELGTLVTAVNTAPSVVFVEGEAGIGKTRLVNELLVAVRSESVWVTTGYCQPL 67 Query: 72 ERFASY----------------------LIAAVQQATNGHCAICETMAQKRQYASLTS-L 108 + + +++ + + Sbjct: 68 RDPFPHGVVFECLGGCAKRLSASGRLSAVTGSLRPYLPELADRLPPAPEPLGDQAAERHR 127 Query: 109 FAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNL--PQLG 166 + +L + +V++D + +RF + P L+LVV R P Sbjct: 128 LFRAVRDLLAALGRVVVVVEDIQWADEGS-RQLLRFVMTDPPPGLSLVVTYRREELPGRS 186 Query: 167 IANLRVRDQLLEIGSQQL---AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQ 223 A R S L +E + L +P+ + + +G L+ Sbjct: 187 AALGRAFRPSPGTSSAHLVLGPLEPEEVRGLAQAILGTPVSHEFAVDLHGGTAGIPFVLE 246 Query: 224 LIALSARQNTHSAHKSARR----LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILR- 278 + RQ R LA + L + E LD + R +A+L Sbjct: 247 ETLHALRQREGGIRPDGRGAKRMLAELEVPALLREAMLERLDGLPAHARALAECAAVLNC 306 Query: 279 SMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAA 338 + AL+ +T + + + D+ G + HPL + Sbjct: 307 PADVALLASMTMLAPARAGTAVSKLLTAGVLVEDEDGRYRYRHPLAQRAVYYAL---PGP 363 Query: 339 ELPEIHRAAAESWMAQGFPSEA--IHHALAAGDALMLRDILLNHAWSLFNHSELSLLEES 396 E+H A Q HA AG A + + E Sbjct: 364 RRQELHNRALRMLARQDPRPLLMLAEHAKRAGQHAARLRYGEEAAALAMQAGDATTAVEL 423 Query: 397 LKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIR-EDTMHAEFNALR 455 +L + + + L + L Q + + A E + D R + + E Sbjct: 424 RLSLVAEPAVPPADVNRLVSRLCQDALTGLHQHEVTAELERLLPDTRLSEDVRGEVRLGL 483 Query: 456 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 515 + I E R+ + + +VL L ++ +Q+ E Sbjct: 484 GLLLIRQEGALERGRVEVQLAIDDLGTRPDLALRGMAVLALPYIGITPLAENMRWLQRIE 543 Query: 516 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 575 + L G AW+ + L ++ ++ L Sbjct: 544 RELGAVPRGLSGFAVLANSIGGRMHVGDP-LAWQQLARVDPLSDDVGEQR--HIARLYCN 600 Query: 576 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ-CLAMLIQCSLARGDLDNARSQLNR 634 A +AE R+G+ V + + A I+ G R Sbjct: 601 LADSCSWTGHYQQAERFIRNGLSVAARCGAPYVVGTAEATRIRLDWMAGRWAG---LQER 657 Query: 635 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN--NHFLQGQWR 692 L ++ +S + V G+ AA T + N + + Sbjct: 658 AWQLAETYQHLMPVVSELHLVLGWTDAAHGNWDGAAEHFARTGLSDPGNSIAPVMLAAFG 717 Query: 693 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 752 + ++ + A + E R + + + + Y AGR +DA++V Sbjct: 718 GVVSVRLAQDDVVEACRQADRGLEVFRHKGVWAWAGELVPEAVEAYCAAGRTADAEKVTE 777 Query: 753 D------------------------ALKLANRTGFISHFVIEGEAMAQQLR--QLIQLNT 786 + A + F G + + +++ Sbjct: 778 ELAVGLSSLDAPLAEVALLDCRARIAAHRGRPSAAAQEFHRAGRTYERLGVPYRALRMAE 837 Query: 787 LPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTS------PLTQRE 840 L + E+ + A D LL R L+ RE Sbjct: 838 LAAHHAPGGPDGMGELADRYAELGATRDAARCRHLLRSHGTTTPSRRGRRGYGNELSPRE 897 Query: 841 WQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 V L+ G +N +IA L ++ T++ H+ + +KLG A R + Sbjct: 898 QDVARLLAGGRTNREIAEALFLSRRTVEQHVARVLRKLGAASRTEL 943 >UniRef50_C5HV09 LuxR family transcriptional regulator n=1 Tax=Streptomyces antibioticus RepID=C5HV09_STRAT Length = 908 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 123/934 (13%), Positives = 255/934 (27%), Gaps = 97/934 (10%) Query: 16 TVVRERLLAKL------SGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDE--- 66 V RE L L A ++ ++ G GK+ L+ + + G L Sbjct: 3 LVNREAELGLLKSGLAECAAGRAKMIVVEGGVGCGKSELLDTFTEYATEQGAAVLRGMGI 62 Query: 67 --GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLY 124 +Q L+ V + E + + SP+ Sbjct: 63 RSASDQPLALLRQLLGQVPGWVPSEPGVGEQEFGEA-------------LHRLASRSPVV 109 Query: 125 LVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQL--GIANLRVRDQLLEIGSQ 182 + +DD + +H ++ + + LV + + Q + + Sbjct: 110 VCVDDAQYGDSRSLHHLLQAAGFTRSARILLVFGDSLHLPRRDPVIKTELLRQSNSLRIR 169 Query: 183 QLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARR 242 T Q + + R+ +G L+ + R T + + + Sbjct: 170 LGPLTKQGTAALLAAQGGDAQDRPLVDRLHFITAGNPLLLRALLEECRPATADSGIADKI 229 Query: 243 LAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 + L L A A+L I + + Sbjct: 230 EPMEGGLYGQAVLAS--LYRSGPAALELGHALAVLDEPRAHAI-----LPRLVDQPSALI 282 Query: 303 RQGLFLQRMDD--TGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEA 360 Q L G F + + +H A + + G+P+ Sbjct: 283 DQNLQALTAAGMIAGTAFRH----QAAVATVLADLAPDRRTALHSWVAVALHSAGYPASV 338 Query: 361 I-HHALAAGDAL--MLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 + H L A A L N A + L + L+ L ++ + Q + ++ Sbjct: 339 VARHLLKARSAAQPWELIALRNAAEEALAEDDAVLAIDCLE-LAHEACPDPVQRIEIKMR 397 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALE 477 L R + +R + + ++ G EA + +L+ + Sbjct: 398 LALITWRTNPAAAEYRHLPELLSAMRRGELSPTSLGMLGKLLSAHGRIVEAMEVLRLSED 457 Query: 478 ELPPGWFYSRIVATSVLGEVLHCKGE---------------------------------- 503 + ++ + Sbjct: 458 ASCDVPRPVPGIHPTIASMWVRYGFHGVDFPDSGQRGGAAQGPASDSGSLVNGSVPGIPL 517 Query: 504 --------LTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 555 L + E + + + + L ++ A + K Sbjct: 518 LRKSAEDVLIAAQDWSGSAESFLEMCSLTDSMVAPVCSALKALLYSDQVEAAAQWCAKIL 577 Query: 556 QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA-M 614 +++ L ++ + +L+EA ASA +EV+ + + + Sbjct: 578 DEATRRNIPG--WQGVLAVVQGMIALRQGKLEEAVASASMALEVVPERNGSVLVCGTSSI 635 Query: 615 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 674 L G D A L++ + + S + + R + T AA + Sbjct: 636 LAMAYTEMGRYDAAVRLLDQ---PVSQDWFDSVYWLGYLRARGHFHLATNRSHAALSDFL 692 Query: 675 HTAKPEFA---NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 731 + ++ L + A+A + LGE A+ +L+ L Sbjct: 693 RIGNLAGSWGIDHPMLVSWRTDAAQAWLQLGEPSQAQQLLDAEVSQ-EFPGYGRLRGITL 751 Query: 732 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 791 L + R R + + +R EA Q L + Sbjct: 752 RLQAAIAPLTDRVQLLGRAVEEFDAGNDRLELAKALADLSEAHEALGNQT--RADLVRRK 809 Query: 792 QHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGY 851 + R + + E LT+ E++V L G+ Sbjct: 810 GRHLAAECGADPLYRRMAAGGRNRMVAADSESGSVRTEPKPGVDLTEAEYRVASLASYGH 869 Query: 852 SNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQD 885 +N +I+ +L + +T++ H+ +YQKL + RQ+ Sbjct: 870 TNREISQQLYITVSTVEQHLTRIYQKLRITRRQE 903 >UniRef50_A5UVS9 Transcriptional activator domain n=2 Tax=Roseiflexus RepID=A5UVS9_ROSS1 Length = 1070 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 146/844 (17%), Positives = 274/844 (32%), Gaps = 68/844 (8%) Query: 6 KLSRPVRLDHTVVRERLLAKLSGA-NNFRLALITSPAGYGKTTLISQWAAGKN-DIGWYS 63 KL P + R +LA+L A + R+ + +PAG+GKTT ++QW A + + WY+ Sbjct: 8 KLVVPTSARPLIERPNVLAQLDRAIRSKRVVALAAPAGWGKTTALAQWVAQRTMPVAWYT 67 Query: 64 LDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 LD D F YL+ +V G I +A+ L + Q+ + A+ Sbjct: 68 LDSADRDPHVFLDYLLHSVADFVPGAPGIAARLAETTPQG-LAEMIHQVALAFADAPEHF 126 Query: 124 YLVID--------DYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRVRD 174 L++D I + ++ I + LV+ SR LP L G+ + + Sbjct: 127 ALILDDVHVLDDDQAQSIPGVSLVFTLLASIAEYASHCHLVLASRTLPVLHGMVRMVAQQ 186 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 + L F + ++ + + ++ V GW T + L + Sbjct: 187 RAAVFDYSVLQFHRDDTQRLAGITSGLILSDEAAEQLTASVGGWVTGIVLSLDQPVAHKD 246 Query: 235 S-------------AHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMN 281 + N S + Y +++L + + FL +++L ++ Sbjct: 247 GMTGQQVVDRHLMHVPTPEEAVIEANTSQVYAYFAEQILAPLPADLQRFLEDTSVLHDLS 306 Query: 282 DALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELP 341 + +N L+EI R+GLF+ W YH LF ++LR R Sbjct: 307 PQRCDILRSADNSAEYLDEIRRRGLFVSSRAG---WLSYHSLFRDYLRSRLAR-DPQRCR 362 Query: 342 EIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALP 401 ++ R+A + + A+ A+ LAAGD D++ + L S + L + L Sbjct: 363 QLLRSAGDLYAAEDDIERALDCYLAAGDDQHAIDLIRSAVPRLRQCSRQTTLLTCFERLH 422 Query: 402 WDSLLEN---------------------PQLVLLQAWLMQSQHRYGEVNTLLARAEHEIK 440 + P L+L +A + + A H Sbjct: 423 RARRTNDQRTASGGFPPATRAARKQSIPPDLLLAEARVYSDLALWERAY----LALHLAG 478 Query: 441 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 500 I + ++ AE L A++ + G+ A+ + ++ R+ Sbjct: 479 AIGDASIRAEAQILSAELQVLQGDYARAQHALRFV--DVNNLDNRLRLEYHVAAARAHIM 536 Query: 501 KGELTRSLALMQQTEQMA----RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 556 GE+ ++ +++ + D AQG +A ++A Sbjct: 537 AGEVAAAITELERAHTLVATLIDTVDNPAALADIYDNLGWAYAAQGDRPSAIRYLKRADA 596 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAML 615 + + + R EA + G+E+ + ++ + L L Sbjct: 597 CWQSSGNQGR--RALTLNNMGVMAMEEGRFAEARTTLDLGLEIARQTELRREETVLLCSL 654 Query: 616 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH 675 + L GD + A + L S + A ++ + A W Sbjct: 655 AELDLREGDFEQAIQRFTTAHALATRLDIASSVEAAAAGAL-WAAILSDNLTLAQAWHDT 713 Query: 676 TAKPEFANNHFLQGQWRNIARAQILL---GEFEPAEIVLEELNENARSLRLMSDLNRNLL 732 A ++G+ A L EF +L E SL + LL Sbjct: 714 AASIVTPLQPEVRGRLALARAALALQCPHPEFASFASLLAEATTYEESLSEDERIYMALL 773 Query: 733 LLNQLYWQAGRKSDAQRVLLDALKLAN-RTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 791 + ++G + A A + A F + + Sbjct: 774 RTELAFARSGWHAAASLWEQFAARAATLPETLWRRFASMHRPLFEAAAPYDPRAGRAIAL 833 Query: 792 QHRA 795 A Sbjct: 834 SRTA 837 Score = 56.8 bits (136), Expect = 4e-06, Method: Composition-based stats. Identities = 67/543 (12%), Positives = 137/543 (25%), Gaps = 40/543 (7%) Query: 327 FLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFN 386 R + + +L A+H A A GDA + + + A Sbjct: 440 ATRAARKQSIPPDLLLAEARVYSDLALWERAYLALHLAGAIGDASIRAEAQILSAELQVL 499 Query: 387 HSELSLLEESLKALPWDSLLENPQL--VLLQAWLMQSQHRYGEVNTLLARA----EHEIK 440 + + + +L+ + ++L +L + A T L RA I Sbjct: 500 QGDYARAQHALRFVDVNNLDNRLRLEYHVAAARAHIMAGEVAAAITELERAHTLVATLID 559 Query: 441 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLH 499 + A+ G+ A R K A G R + + +G + Sbjct: 560 TVDNPAALADIYDNLGWAYAAQGDRPSAIRYLKRADACWQSSGNQGRRALTLNNMGVMAM 619 Query: 500 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 559 +G + + ++ARQ ++ L +E+ +G + A + A L Sbjct: 620 EEGRFAEARTTLDLGLEIARQTELRREETVLLCSLAELDLREGDFEQAIQRFTTAHALAT 679 Query: 560 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 619 + + A +L L +A + I + + +L + Sbjct: 680 RLDIASSVEAAAAGALWAAILSDNLTLAQAWHDTAASIVTPLQPEVRGRLALARAALALQ 739 Query: 620 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 679 + + S L + + + + +G AAA+ W + A+ Sbjct: 740 CPHPEFASFASLLAEATTYEESLSEDERIYMALLRTELAFA-RSGWHAAASLWEQFAARA 798 Query: 680 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN--------- 730 + ++P L+ A + + Sbjct: 799 ATLPETLWRRFASMHRPLFEAAAPYDPRAGRAIALSRTASPSSVRWRITTLGGFACLVDG 858 Query: 731 -----------------------LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF 767 L + G + L AL+ ++ Sbjct: 859 KPVDLSQLHRALLVRLLDAGPQGLAVERLWEAVWGDDVISMPALHQALRRLRLQTGLAAS 918 Query: 768 VIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 EG + I+ + L I + F E Sbjct: 919 AREGAVAIRSGWDAIEYDVRELERILETPPSLESIQRAMTLYGGEFLPGAPASAALWVEA 978 Query: 828 PEL 830 Sbjct: 979 RRA 981 >UniRef50_Q67R77 Putative transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67R77_SYMTH Length = 1070 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 122/823 (14%), Positives = 241/823 (29%), Gaps = 56/823 (6%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQ 70 + R L A+L RL ++ +PAGYGKT+ + + + + + Sbjct: 10 QAAHVHLPRPHLTARLQEGLTRRLTVLLAPAGYGKTSALRAFVGAAGLPVLWLDRPFETE 69 Query: 71 QERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDY 130 F L V + G ++ T+ L +A H LV DD Sbjct: 70 WRGFLQQLGEGVARELRGGTSLVRTLYGGGLPEDPLPLLLADLSAVAGDH---VLVFDDL 126 Query: 131 HLIT-NPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQ 189 + + + + + E + + +R L++ + EI Q+L F + Sbjct: 127 RPVPGDSPVADLIGRLAESAGERTHIYIAARAALPFPTVRLKLSEGAGEITEQELRFRRE 186 Query: 190 EAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA-RRLAGINA 248 E + P AA R+ GW AL L+ +ARQ A A LA Sbjct: 187 EMAAWLTAATGEPPSAAVLDRVEQLTEGWPAALVLLTEAARQAGGLAAIPAVDDLAAPLP 246 Query: 249 SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFL 308 L+ YL DEV++ +D A R F+ +SAIL + A + G + + ++ + R L Sbjct: 247 EDLTAYLADEVMEGLDPAVRSFMEESAILNFVTPAACEALLGRRDSEQMVDRLCRVHRLL 306 Query: 309 QRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAG 368 + + Y L FL + L + R Sbjct: 307 VPVGPG--VYRYPSLLQRFLLGYLRTRGPDVLNRLSRMC--------------------- 343 Query: 369 DALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEV 428 A + E L + + L + P + L +A + + + Sbjct: 344 -----------IAPAWLAEPEPDRLSQMAEHLSPAQKAQYPWVALCEARYLLNAGQAERA 392 Query: 429 NTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSR 487 + A + + + L + + ++ A L P + Sbjct: 393 MGIARLALRSCEQAGDRRGVFYSHVLLSDCLFLRRDFARSQEHLAEAASALQPEFRDDAA 452 Query: 488 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTA 547 ++A A ++ + + L + +G ++ Sbjct: 453 LLALKQAVLAYMTGAGPEELEAGLRTALVLYVESGDLIGEAEVLDVLGMVRVRRGDYRSG 512 Query: 548 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 607 E++ +L+ + + A R +A +R + Sbjct: 513 LALLERSSRLLRAAGIPEHETG----LNLAWACLESGRFQDACRLSRPLATGSRKVG--R 566 Query: 608 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 667 + L L+ G+ A + + + + ++ A Sbjct: 567 RAYALLCLLIAHTRLGEFTAASALVPLAHAAVEELGLPHLRAWLNAALAALHRLSGEAPA 626 Query: 668 AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 727 AA + + + G+ A + + E + + Sbjct: 627 AA-------PDGPGPEGAHVPERVEAVMLHLFFTGDARAAAQIAAKTLETLQERATALER 679 Query: 728 NRNLLLLNQLYWQAGR---KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQL 784 L L ++ R + +A + L AL R G + E + + + Sbjct: 680 TLLSLGLAVARFRTARTESRREAVQALQRALAECQRRGTDFFVLHEWQLALAVVVYGLAY 739 Query: 785 NTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEV 827 N P + R+ E+ R + + + L Sbjct: 740 NVQPAYCVNLLMRMAGELPASVRLRGIRLAGSELRALPTAWRA 782 Score = 46.8 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 67/617 (10%), Positives = 132/617 (21%), Gaps = 35/617 (5%) Query: 283 ALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPE 342 + V G+ + + + P L + EL Sbjct: 124 DDLRPVPGDSPVADLIGRLAESAGERTHIYIAARAALPFPTVRLKLSEGAGEITEQELRF 183 Query: 343 IHRAAAESWMAQGFPSEAIHHALAAGD----ALMLRDILLNHAWSLFNHSELSLLEESLK 398 A A + +L A + + +++ Sbjct: 184 RREEMAAWLTAATGEPPSAAVLDRVEQLTEGWPAALVLLTEAARQAGGLAAIPAVDDLAA 243 Query: 399 ALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQV 458 LP D L +++ + E L + + + +V Sbjct: 244 PLPED-LTAYLADEVMEGLDPAVRSFMEESAILNFVTPAACEALLGRRDSEQMVDRLCRV 302 Query: 459 AINDGNPDEAERLAKLALEELPPGWFYSRI-VATSVLGEVLHCKGELTRSLALMQQTEQM 517 L+ G+ +R + L + L Sbjct: 303 HRLLVPVGPGVYRYPSLLQRFLLGYLRTRGPDVLNRLSRMCIAPAWLAEPEPDRLSQMAE 362 Query: 518 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 577 W + ++ L G + A A + + + + + + Sbjct: 363 HLSPAQKAQYPWVALCEARYLLNAGQAERAMGIARLALRSCEQAGDRRGVF--YSHVLLS 420 Query: 578 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 637 L+ ++ L + G R Sbjct: 421 DCLFLRRDFARSQEHLAEAASALQPEFRDDAALLALKQAVLAYMTGAGPEELEAGLRTAL 480 Query: 638 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 697 +L + V + GD + L +++ A N+A A Sbjct: 481 VLYVESGDLIGEAEVLDVLGMVRVRRGDYRSGLALLERSSRLLRAAGIPEHETGLNLAWA 540 Query: 698 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 757 + G F+ A + L +R + LL L + + G + A ++ L Sbjct: 541 CLESGRFQDACRLSRPLATGSRKVGR---RAYALLCLLIAHTRLGEFTAASALV--PLAH 595 Query: 758 ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENF 817 A + A + + F Sbjct: 596 AAVEELGLPHLRAWLNAALAALHRLSGEAPAAAPDGPGPEGAHVPERVEAVMLHLFFTGD 655 Query: 818 VERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQK 877 T E L+ G A A T Sbjct: 656 ARAAAQIAAKTLETLQERATALER---TLLSLGL-----AVARFRTART----------- 696 Query: 878 LGVAHRQDAVQHAQQLL 894 R++AVQ Q+ L Sbjct: 697 ---ESRREAVQALQRAL 710 >UniRef50_D1A6A5 Transcriptional regulator, LuxR family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A6A5_THECD Length = 940 Score = 188 bits (479), Expect = 6e-46, Method: Composition-based stats. Identities = 130/944 (13%), Positives = 251/944 (26%), Gaps = 84/944 (8%) Query: 8 SRPVRLDHTVVRERLLAKLSGA------NNFRLALITSPAGYGKTTLISQWAAGKNDIGW 61 S P R+R LA L I+ G GKT L+ Sbjct: 21 SAPEPEPVLHGRDRELAALRELIEQARRGRGGALQISGGLGMGKTALLEAALRQAAAGLR 80 Query: 62 YSLDEGDNQQERF--------ASYLIAAVQQATNGHCAICETMAQKRQYASLTSLF---- 109 G + RF + + + A + S Sbjct: 81 TLGTRGIPDESRFALAGLHRMLRPVADRLDRLPPQQAAALAFLTDAAAEPPAGSFALCRA 140 Query: 110 AQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIAN 169 + P+ +DD + P + R + + ++ R+ Sbjct: 141 VLGLLTELGRDGPVLCWVDDAQWLDAPSLEALAFAARRVADQPVAMLFTVRDEHGPP--- 197 Query: 170 LRVRDQLLEIGSQQL-AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALS 228 L +I S +L +A R ++ + + +G A+ +A + Sbjct: 198 -EEAGPLSDIRSLELGPLEEADALAILRGRTGGGHSELDAE-LLEAAAGNPLAMVELAAA 255 Query: 229 ARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRV 288 + L + R +L + + +TR Sbjct: 256 LGDAPARQATAVTLPPHSRLRAHYR----RRLYRLPPGARMLVLLAVADDRLELDTLTRA 311 Query: 289 TGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAA 348 E + ++ + ++ D PL L AE +HR A Sbjct: 312 AAEAGVDLAEWDVALKSGLVRV--DGERVHVADPLARACLETDAAL---AERRAVHRLLA 366 Query: 349 ESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLEN 408 + H A + + A ++ + +L Sbjct: 367 KVLDRPWHRLRRAWHRAAITEGVDAALADELSAGAVLAEETGDHAAAARAWQRAAALTPQ 426 Query: 409 PQL----VLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGN 464 P+L +L A R LL RA + + + L ++ + G+ Sbjct: 427 PRLKADRLLAAAEDHWRAGRPRSARALLQRARPLL---GSAELIGRADRLHGEIELRAGH 483 Query: 465 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 524 P A RL A L + A E G+L Q+ ++ Sbjct: 484 PPAAARLLLDAAGRLAESRPGLALSALMRAIEAADLTGDLRAQRNAAQRAAELCHPAGHP 543 Query: 525 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN------------------------- 559 L QG + ++ +L Sbjct: 544 MTELMMTHFAGMAAALQGDYERTCTPLRRSMELSETSTDPAAKIWGSVSAITLGDDLRAH 603 Query: 560 ---------EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ-QQL 609 + + + + + + R A A + G+ + + + Sbjct: 604 ELAEQAVHAARRPQAAALLPACLVTLSLVECLLGRFPAALAHSAEGLRLARAAGQDNCAI 663 Query: 610 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 669 LA++ + GD + A SQL + +G + S + A A A Sbjct: 664 DHLALMALVNAFLGDREAAMSQLAAIAEPVG-ARGLSRPATVAAWALACLELADDRPADA 722 Query: 670 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 729 A LR + A + A L + A + L Sbjct: 723 AARLRLRGVAGAQHRTIRVLATPYFVEAAVRSDRRRQAARALTAYRQWAEGTGSPARLAL 782 Query: 730 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 789 A A +AL+ + E A ++ P Sbjct: 783 AHRCQG---LLAEDDEAAVAHFEEALRHHAKAES----AFEMARTALLYGHRLRRGRKPR 835 Query: 790 LEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIR-TSPLTQREWQVLGLIY 848 + + L+ ++ ++A + E P LT ++ Q+ L+ Sbjct: 836 AAREHLRDALQIFTEYGAERWAERARAELRAAGETVEAPAAPPGLDELTPQQLQIARLVA 895 Query: 849 SGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 G +N +IA +L ++ TI+ H+RN++ +L + R + ++ Sbjct: 896 EGATNREIAAQLSLSPRTIEHHLRNIFTRLDIRSRVELTLLLRR 939 >UniRef50_D1C6P4 Transcriptional regulator, LuxR family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6P4_SPHTD Length = 875 Score = 188 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 132/880 (15%), Positives = 241/880 (27%), Gaps = 51/880 (5%) Query: 26 LSGANNFRLALITSPAGYGKTTLISQWAA--GKNDIGWYSLDEGDNQQERFASYLIAAVQ 83 ++ + N L + AG GKT L++ + + +Y + + R L+ Sbjct: 19 VAASGNGHLVFVAGEAGVGKTALVTAFGRMVEQEASPFYGACDPLSTP-RPLGPLLDIAA 77 Query: 84 QATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMR 143 QA G + E Q LA P +VI+D H + Sbjct: 78 QAGEGLRHVLE------QDDHHQRALPAFHSFLARRAQPALVVIEDAHWADEATLDLLRF 131 Query: 144 FFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPI 203 R ++V R+ LRV L + L++ Sbjct: 132 IGRRVASTRALMLVTYRDDEIGPRHPLRVVLGDLATSPTVRRMHLPPLSESAVRTLAAGT 191 Query: 204 EAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNV 263 + + G + + + Q + D ++ Sbjct: 192 DFDPVE-LHRQTGGNPFFVTEVLAAGGQGI--------------PLTVRDAVLARAARLP 236 Query: 264 DLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPL 323 A + I L+++V +E+ G+ L R + H L Sbjct: 237 SAARAILDAAAVIGAYAETDLLSQV--VSAEMSAVEDAVAGGMLLPRDNGYAFR---HEL 291 Query: 324 FGNFLRQRCQWELAAELPEIHRAAAESWMAQG----FPSEAIHHALAAGDALMLRDILLN 379 + +HRA ++ A G + HHA AGD + Sbjct: 292 ARQTILDALS---PTRRVTLHRAVLQALRAVGTGPDDLARLAHHAEEAGDREAVLAYAPA 348 Query: 380 HAWSL----FNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARA 435 A + E +L+ +E L+ A + A Sbjct: 349 AAQRASSLGARREAAAQYERALRFAGDLDPVERAALLEGFALEAYHTDQMDRAIAARQEA 408 Query: 436 EHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF-YSRIVATSVL 494 + E +V I G EA++ A+ L A V Sbjct: 409 VEIWRAAGNPRKVGENLCHLTRVLIMAGRNAEAKQAISEAVSVLESLPPGAELAFAYQVY 468 Query: 495 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 554 + ++ ++ ++A + + + L G + E++ Sbjct: 469 AHFHMLDRDTDTAVTWGEKALELAERCQDEITVIAAYNTIGSALLVGGDMSGTGP-LERS 527 Query: 555 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLA 613 QL + Q L + EA GI Q+ A Sbjct: 528 LQLALQAG--QENHAAIAYTNLGSGLGEMHQFAEAIRWLEEGIAFTAERDLDTQRWYMCA 585 Query: 614 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL 673 L L +G+ D A ++ ++ + A GD A Sbjct: 586 WLALVRLYQGEWDAA---VDAALDVTRRPGISAISRIMAFVALGRLRARRGDPDAWIALD 642 Query: 674 RHTAKPEFANNHFLQGQ-WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 732 A A L G+ + + A R + Sbjct: 643 EALEMARVTATLQRLAPVHAARAEAAWLAGDADRTLHEACAAYDLALHHRHIWFTGELAY 702 Query: 733 LLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 792 + + A L++ + E + R L + + L Q Sbjct: 703 WQWRAGARVTVPPWAGEPYR--LQIEGDWAAAAECWREMNCPYEMARALAESDDEAALRQ 760 Query: 793 HRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYS 852 H + P + LT+RE +VL L+ G S Sbjct: 761 ALDVFRDLGAAPMVAHVSRRLRAVGARGIPRGPRPSTRQHPAGLTRREAEVLDLMAQGLS 820 Query: 853 NEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 N +IAG L ++ T++ H+ ++ KL V+ R +A++ A++ Sbjct: 821 NTEIAGRLYLSPKTVEHHVSSILTKLNVSSRHEAIRVAER 860 >UniRef50_C7QAM9 Transcriptional regulator, LuxR family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QAM9_CATAD Length = 925 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 144/927 (15%), Positives = 247/927 (26%), Gaps = 88/927 (9%) Query: 20 ERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDI-----------GWYSLDEGD 68 + L+A++ + L I+ AG GKT L++ A D+ Sbjct: 18 DDLVARVREGLSGALV-ISGEAGIGKTRLLTYAAEAAGDLQTARVTGVKTESQLGYAALH 76 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVID 128 F L A +A T L + PL ++D Sbjct: 77 RLLLPFLDRLDRLPDPQREALGAAFGMVAAPPADRFRTGLATLTLLADVVGDGPLMCLVD 136 Query: 129 DYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTH 188 D + + R + + LV+ R+ + D L I L + Sbjct: 137 DAQWLDRESLEALAFVGRRLHADGIGLVMCVRDGEPGALP----IDGLPAIRLTGL--SD 190 Query: 189 QEAKQFFDCRLSSPIEAA--ESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 +A + + + A SRI + G AL T A L+ Sbjct: 191 ADAGRLLAALPVASLGPASPTLSRIVAEAGGNPLALSEFTADLAGGTVPAAAPVPLLSAP 250 Query: 247 NA-SHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN-GQMRLEEIERQ 304 + + +D++ T+ LL ++ + + ++ R GE L+ Sbjct: 251 RSLGPRLEAHFQRQVDSLPEETKSLLLLLSVAPADDPVVVWRAAGELGLSAQALDAAVAG 310 Query: 305 GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHA 364 G+ D F HPL + + AEL +H+ AE+ P H Sbjct: 311 GILTV---DPHPVFR-HPLIRSAVHSAAA---PAELRRVHQVLAEAIDPLTGPERRAWHL 363 Query: 365 LAA--GDALMLRDILLNHAWSLFNHSELSLLEESLKALPWD--SLLENPQLVLLQAWLMQ 420 AA G + L A + L A + A Sbjct: 364 AAAVVGLDEEVAAELERVAERAQGRGGYAAQAAFLLAAAELSPDPQARAERYSAAAQAHL 423 Query: 421 SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP 480 +L AE T A LRA V +G A + A +++ Sbjct: 424 YIGESAAAQPMLDHAESY---PGTSTSRATIRRLRAMVEWLEGRIAMAPAILMAAAQDVI 480 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSL---ALMQQTEQMARQHDVWHYALWSLIQQSEI 537 E T + L +Q M +I Sbjct: 481 AHDEPLARDMVFEALSAAMMTREHTVGMTLDELARQALAMPWDPSRPQTVSDVVIDAYCT 540 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 A G+ + + L + L + A+ LW Sbjct: 541 RIADGYAAAVPKLRAAVEALCTGDLGDIGMPIALLGFVGAEDLWDEEGYRAVLGRFIEVS 600 Query: 598 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR----------------------- 634 L L L G A S + Sbjct: 601 R--ERGAVHSLAVALNSLAVAELWSGRFGKAESCYDESDDIYASIVNMPIGASHRVELRA 658 Query: 635 --------------LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 680 + G ++ +A+ ++ G A W R + + Sbjct: 659 WQGAETQLRVGADSAIQVWGEQLGYAVLTCHAHYSLAVFELSAGRFREALAWAR--LEYD 716 Query: 681 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 740 + A +G+ E A L L E A L + Sbjct: 717 NDVPGQGNRLLPEVIEAASRVGDRELASAALSRLAERASLSGTAWALGVLARCRALMSAD 776 Query: 741 AGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILR 800 +S + L T +++ GE + ++ R L + Sbjct: 777 DKAESLYEAALRHLSSTTVATDLARTYLLYGEWLRRRDRLADARTQLRKAHDMFTD---- 832 Query: 801 EINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGEL 860 FA ++ H PLT +E QV L +G +N +IA L Sbjct: 833 ----MGAVGFAERARTELQSAGEHTRKHTAPAAHPLTPQEKQVASLAATGSTNTEIATRL 888 Query: 861 EVAATTIKTHIRNLYQKLGVAHRQDAV 887 + +T++ H+ +++KL + R+ Sbjct: 889 FITTSTVEYHLNKVFRKLDITSRRQLA 915 >UniRef50_C4DE14 Transcriptional regulator, luxR family n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DE14_9ACTO Length = 909 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 133/927 (14%), Positives = 247/927 (26%), Gaps = 82/927 (8%) Query: 17 VVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFAS 76 + R R LA S ++ G GK+ L+ + A D+ + + + E + Sbjct: 8 LNRLRRLAAESRDGRGNAIVVRGGPGIGKSALLDELAGAVTDVRVLRVTGLETEAELPFA 67 Query: 77 YLIAAVQQA-----------TNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 L ++ + A L L + P+ Sbjct: 68 ALHLLLRPVSGLVGELPDPQRDALRAAFGQGGGVDADRFLVGLAVLTLLADLAEERPVLC 127 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 ++DD + + R + +T+V+ R+ A L E+ L Sbjct: 128 LVDDAQWLDRASADALVFAARRLDADRITMVLAVRDD-----AENAALAGLTELRLDGL- 181 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAG 245 ++ + A R+ + G AL + + LA Sbjct: 182 -DEAQSHALLSQVAD-DLVAEVRERLVVEAQGNPLALIEFTRALSPEQRAGRLDPLPLAA 239 Query: 246 INASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQG 305 + + + ++ A R L+ +A + N ++ R + + + Sbjct: 240 TATVGRLEESLRAAVRSLPQAARQLLVFAATEGTGNLGVVLRAAAGADVSDLVPAERAR- 298 Query: 306 LFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHAL 365 L + + F HPL + AE E HRA A + H Sbjct: 299 --LVHVSEHRLEFR-HPLVKAAAY---REAPLAERIEAHRALAAVLDDEADADRRAWHLS 352 Query: 366 AA--GDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLE--NPQLVLLQAWLMQS 421 AA G L ++L + + + ++ + A Sbjct: 353 AAALGPDEELGEVLRLAGQRARRRGSHASAVTAYERAAQLTVERERRAGRLTAAAESAVV 412 Query: 422 QHRYGEVNTLLARAEHEIKDIRE------------------------------------D 445 + ++ RA D Sbjct: 413 AGQLRRARAVMERARRLTTDPAAVARLAVIQATVDSELGGVSAPARTLLDAVPAITADAP 472 Query: 446 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT 505 A A A A G+ A+L P + +V G G++ Sbjct: 473 NQAANMLAQAANSAWFAGDHASLRASAELLTTLEPRLDAALVPIVRTVSGMERLVAGDVK 532 Query: 506 RSLALMQQTEQ---MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 562 L L++ + + + G A E + Sbjct: 533 TGLDLLRAALAPSVASARSVAHEEESVAATFAVFAALMSGNTDAACELASAWVTDCRRRG 592 Query: 563 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 622 H + +AQLL L A A A + + Q + +L S R Sbjct: 593 RIGSLPHALQLLTQAQLLSGR-HLQAAAAGAEAWRIAEDTGQSGRLRYLGGILAWLSAIR 651 Query: 623 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 682 GD + R E + + + G AA + Sbjct: 652 GDDAECVTLAERAEGAVRERNGSG----WGECALGLLDLVRGRPAALVERMGRIMDGPLR 707 Query: 683 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 742 + + + A + LGE A+ A + L L Sbjct: 708 HTVIVTIAIPDFVEAAVRLGEPRLADGAFARFEAWAVASAQPWALAMVERCRALLEPDVE 767 Query: 743 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREI 802 + + L + ++ GE + ++ R+ L A Sbjct: 768 AEDRFRAALAHHVHGGRCFEHARTRLLYGEWLRRRRRRADAREQLSAAAHQLAD------ 821 Query: 803 NQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEV 862 +A + + + LT+RE V+ L +G +N QIA +L + Sbjct: 822 --LGAIPWAERARSELAATGGTLAPHQDSPLGTLTRRELDVVRLAATGATNRQIAAQLFL 879 Query: 863 AATTIKTHIRNLYQKLGVAHRQDAVQH 889 + T+ H+ Y KLGV R + + Sbjct: 880 SPRTVGYHLYKAYPKLGVTTRAELAER 906 >UniRef50_C8XK28 Transcriptional regulator, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XK28_NAKMY Length = 947 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 124/919 (13%), Positives = 246/919 (26%), Gaps = 75/919 (8%) Query: 31 NFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQER----------------- 73 R+ ++ AG GK++L+++ G+ L + ER Sbjct: 37 EGRVVVVAGRAGIGKSSLLAESQRAARAGGFSVLTARASDLEREFAFGVARQLFERAVRR 96 Query: 74 ---FASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDY 130 + + + + A + + + L L+ + A PL L +DD Sbjct: 97 SPQWWAGAADQARAVFDEVPAAPGGIFEDVSQSVLHGLYWLVVN--ASADGPLLLTVDDL 154 Query: 131 HLITNPVIHESMRFFIRHQPENLTLVVLSRNL--PQLGIANLRVRDQLLEIGSQQLAFTH 188 L + R + +V R P A + Q T Sbjct: 155 QLCDRSSLRFLSYLSRRLDGLPVVVVAGYRTAGQPPADAALDELVGDPATQLVQPQPLTL 214 Query: 189 QEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSA-RQNTHSAHKSARRLAGIN 247 + + R+ + ++ G L +A + S +A + Sbjct: 215 EAVTEVLRRRMGTYPAPEFAADCRRVTGGNPLLLDELARALQADGVRPDAASVAAIATLG 274 Query: 248 ASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLF 307 +S ++ + A + I A++ VTG + +E R L Sbjct: 275 PRAVSRTVLARLAHAGPQAIAVAQALAVIGDWEGVAMVEAVTGLD--ADEIEAATRTLLR 332 Query: 308 LQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAA 367 + + HPL + + + + + A AL Sbjct: 333 AEILQPGSPLRFVHPLVRDAVYRELTPVESERRHLRVADVLRTMGRPDEQIAAHALALQP 392 Query: 368 GDALMLRDILLNHAWSLFNHSELSLLEESLKA--LPWDSLLENPQLVLLQAWLMQSQHRY 425 + +L A + L+ + P+L+ + Sbjct: 393 AGREWVVTVLRAAALIAVHRGAADDALAYLRRAVIEPAPDDVRPRLLQELGMSESLANEP 452 Query: 426 GEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY 485 L A + E + +++ I P EA L + A LP + Sbjct: 453 VSAIEHLRAAYQLASAPAD---RGEIVGVLSRMLIFTNPPGEAVELLRQARATLPADFGD 509 Query: 486 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ 545 +V H + + + + + + + + + Sbjct: 510 LHDALVAVELYAGHFGADDADAGERLSLV-----RVPGPGSGPGARMLAATAAWDRALTG 564 Query: 546 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 605 + + + F+ + A +L A+ AR + L + Sbjct: 565 APMAGCVALARAALDDGVLVRADPWFMSIVAAGVLVLADEAGAADVWARMLADGLRNGSQ 624 Query: 606 QQQLQCLAMLIQCSLARGDLDNARSQLNRLE-NLLGNGKYHSDWISNANKVRVIYWQMTG 664 L G LD A L + E + + G H ++ G Sbjct: 625 LTVSGVRLWQGWNFLEWGALDEAAHALGQYETDTIRRGGQHESGMAYWAGFHTRLLVDRG 684 Query: 665 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 724 D A A A ++ L + + + G+++ A + L+ R + Sbjct: 685 DLAGARAAWGRAAPAAPGSDGDLLLRRAEL-EVLLAEGQWQQALEAADRLDAVRRRVVNP 743 Query: 725 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS------------------- 765 + L + R S+A + A + G Sbjct: 744 AW-VPVAGLRARALAGLQRWSEATAAAESGVSAARQWGAPRTVGSALRVLAGVLDAAGSD 802 Query: 766 ----------------HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHK 809 +E L ++ + R + Sbjct: 803 SCLPVFDQAVGALADSPARLELARAEAGLGGALRRRGQAVAARPHLARAVELATACGADS 862 Query: 810 FAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKT 869 A + P L LT E + + L +G +N+ IA EL V T++ Sbjct: 863 VAGPAAAELRVAGGRPRQRALTGIEALTPSERRAVELAAAGRTNKAIAQELFVTPKTVEV 922 Query: 870 HIRNLYQKLGVAHRQDAVQ 888 H+ + Y+KLGV R + Sbjct: 923 HLSSAYRKLGVTSRGELAA 941 >UniRef50_D1S741 Transcriptional regulator, LuxR family n=4 Tax=Actinomycetales RepID=D1S741_9ACTO Length = 940 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 138/933 (14%), Positives = 266/933 (28%), Gaps = 85/933 (9%) Query: 20 ERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFA---- 75 R+ +AL+T G GKT+L+ + + ++ ER Sbjct: 13 RRVFHACEEQQRGHVALVTGAVGSGKTSLLESFGEWTAGSRGQVMSATGSRAERGLHLGV 72 Query: 76 ---------------SYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL--AE 118 +++ ++ AT+ + L LF L Sbjct: 73 VGQLFHSARLAPETAAHVEKLLRDATSAVPLPEVGGEASDGDRAWAPLLHGLFTTLIDLT 132 Query: 119 WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVL--SRNLPQLGIANLRVRDQL 176 + PL L++DD H +H + R + + +V S P + + Q Sbjct: 133 ANGPLVLLVDDVHHADPASLHCLLYVTRRLRHARIMVVFAEASTLRPPHPLFRAELLSQP 192 Query: 177 LEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSA 236 T + + + A + G + + S Sbjct: 193 HFSRIGLPPLTVDAVARLVEGAVDDADTRATAEHYVRMTGGNPLLTRALLDERAGGEGSD 252 Query: 237 HKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSM-NDALITRVTGEENGQ 295 H + + L L + R A+L + L+ + Sbjct: 253 HDVPSVGGAFDQAVLG------CLYRHEPGVRRVAQALAVLDRPASTELLGHLLDVMPAT 306 Query: 296 MRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 + L D LR A E +H+ AAE +G Sbjct: 307 TVPAVRVLRTSGLMECDQLRH--------SRILRSILADMSADERRSLHQRAAEVLHDRG 358 Query: 356 FPSEAI-HHALAAGDA--LMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLV 412 + + H +AAG A +L + A + + L+ L + E + Sbjct: 359 AEASVVAEHLVAAGAAVTGWRVPVLQDAAGHALSSGRPDVATACLRLLARAPVDEQQRTA 418 Query: 413 LLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLA 472 + + T+ + ++ R + + + G DEA Sbjct: 419 TTEMLVNARWQINP--LTVNGQLTELVQTARAAGWSTDASLSAVPYLLWQGRIDEAAEAV 476 Query: 473 KLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 532 + G + + + LA ++QT + + L+ Sbjct: 477 SGFSADEEQGPAAPPGRLRIMQLLISLSHPDH---LANVRQTPATWSRAAGAPTTVSPLL 533 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 Q +L A +T A Q++ H + + + L R D A Sbjct: 534 QAVTVLGAALTPTADNDTVTTAEQILQRHHTDDGALGLLTAPL--LALLWAGRSDRAAVW 591 Query: 593 ARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 651 ++ ++ + P + A+ + +L GDL A + + Sbjct: 592 GDVLLDRPVAQHAPGWRAVIRAIRAEAALRVGDLPGAEHHARAALEDMPAPAWGVAIAGP 651 Query: 652 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 711 + + +G A A WL H P R + + A L Sbjct: 652 LSTLIAS-ATESGRFAEADRWLAHPTPPGMFRTPLGLHYLAARGRHHLAVRRPHAATTDL 710 Query: 712 EELNENARSLR-LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL------------- 757 E R+ + L L L ++ G K+ A ++L + L++ Sbjct: 711 RRCGELMRTWGIDAAGLVPWRLELARVQLSVGNKTQAMQLLQEQLRVPHGVDDRTRGRTL 770 Query: 758 ------ANRTGFISHFVIEGEAMAQQLRQLIQLNTL--------PELEQHRAQRILREIN 803 A + + +L + L + RA+ ++R Sbjct: 771 RLLATTAAQDHRRKLLSEAVNLLQSSGDRLELVRALGDTGQTLQRAGDSARARLLVRRAY 830 Query: 804 QHHRHKFAHFDENFVERLLNHPEVPELIRTS-------PLTQREWQVLGLIYSGYSNEQI 856 Q + A + R +P + L+ E +V L G++N QI Sbjct: 831 QLAQDCGASVLAQRLIRREPGSGLPAYPAAAELQEPDDGLSDAERRVAALAAQGHTNRQI 890 Query: 857 AGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 + L + +T++ H+ +Y+KL V R D Sbjct: 891 SSRLFITVSTVEQHLTRVYRKLDVKRRTDLPSR 923 >UniRef50_D1X635 Transcriptional regulator, LuxR family n=3 Tax=Streptomyces RepID=D1X635_9ACTO Length = 953 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 145/953 (15%), Positives = 269/953 (28%), Gaps = 101/953 (10%) Query: 15 HTVVRERLLAKLSGANN------FRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGD 68 + R+ + L A L L+ G GKT+L+ A + G+ L Sbjct: 14 PLIERQHHIQNLDDAVRECRKSNGGLLLVEGRFGTGKTSLLRTVRALPSVEGFSVLHARG 73 Query: 69 NQ---------QERFASYLIAAVQQ-----ATNGHCAICETMAQKRQYASLTSLFAQLFI 114 N+ + YL+A+ G A+ T+ + + Sbjct: 74 NETESGFSYGLVRQLFEYLLASATPEERTVLLAGPAAMAATLFEHADGGVRGGVAVDREH 133 Query: 115 ELAEW----------HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLP- 163 +L P+ +++DD H P + +++ ++ L V L Sbjct: 134 DLLRGLYWMLVNLSQRQPVLVLVDDLHWADEPSLR-FLQYIECRLGQHPILCVAVTALVH 192 Query: 164 ---QLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWAT 220 + + I L + + F + + + + G Sbjct: 193 HGNAPEAEHFITMPSMPAICLDDL--SRDGVRDLFSAVFNRDPDPDVVRMLHEATGGNPF 250 Query: 221 ALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRH----FLLKSAI 276 L + R+ A L+ L V V R A+ Sbjct: 251 FLSELLTEFRRQGEDT-PGIGAAARTAPRTLARALPRWV-GLVPPEYRENAHVLARSLAV 308 Query: 277 LRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWEL 336 L + + + Q + + + + + H + N + Sbjct: 309 LCT-SGDFAQLASATGLHQDEVTDAASALMDIGLLAQGTPLRFRHSVMRNAVYAHLPNTF 367 Query: 337 AAELPEIHRAAAESWMAQGFPSEAI-HHALAAG--DALMLRDILLNHAWSLFNHSELSLL 393 H +AA++ G P+E + H L A + DIL+ + S Sbjct: 368 ---RFRAHSSAAKALDRDGAPAEHVAEHLLHAPPSEDRRAVDILVAAGEKALANGNPSAA 424 Query: 394 EESLKAL--------------------------------------PWDSLLENPQLVLLQ 415 L+ + + Sbjct: 425 VAVLRRAMQEKAPDDMLADLLLRLGEAEHRARDPKAVEHLTQAMSLAKTPAARASIAFSL 484 Query: 416 AWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLA 475 + + R+G+ LL E++ + L +++ AE+ Sbjct: 485 SGALSMAMRFGDALDLLRSVHAEVEPHDRQLALRLRSELIKLASLSPNTKPAAEQDLAAI 544 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 535 + S I A L + L ++ + + Sbjct: 545 IGADGTENSTSLIRAQQAQA-ALLNGEPAKKVADLSEEALPSGALVAEPDGGAQASWIAA 603 Query: 536 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 L G L A ++A Q +HL E + +RA + L EAE A S Sbjct: 604 FCLLCCGRLTQALSILDEALQEAEAKHLRL--AAEDIRALRALVNMRRGALGEAEVDALS 661 Query: 596 GIEVLSSYQPQQQLQCLAMLIQC--SLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 653 ++ L + + LA+L L R L A R ++ Sbjct: 662 ALKGLGAGSVPALGRPLAVLSLVGVLLHRNQLGAAVEAYERYGIPTHIPQFSIFLPFMIA 721 Query: 654 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEE 713 + ++ Q + H E+ A LG E A + E+ Sbjct: 722 RGQLRIAQGEIESGMGELLRTHELLQEWGARCPAFSPATEAVHALCALGRREEAHALAEK 781 Query: 714 LNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 773 E AR+ ++ L + A D L A++L + T + E A Sbjct: 782 QLEVARAFGSDREVALALCARARATGGATHLED----LEQAVELFSGTADA---LDECAA 834 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 + Q +++ P + R + + + + + Sbjct: 835 LIQ-YGTALRIAGQPSAARRRLRAASDLADGMGATALSKQARQELAVMGVRVRESARTGV 893 Query: 834 SPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 S LT RE +V L G N++IA L V T++ H+ +Y+KLGVA R + Sbjct: 894 SGLTPREHRVCLLAAEGKRNQEIAHMLFVTVKTVEWHLSQVYRKLGVASRIEL 946 >UniRef50_UPI0001C32132 transcriptional regulator, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32132 Length = 928 Score = 185 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 115/901 (12%), Positives = 245/901 (27%), Gaps = 68/901 (7%) Query: 29 ANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDE-----GDNQQERFASYLIAAVQ 83 + ++ ++ G GK+ L+S A D L + + V+ Sbjct: 30 GDRGQVLVLRGEPGIGKSRLLSVAAQTARDRAMTVLTATGVQSEAHLPFAGLHQMFRPVR 89 Query: 84 QATNGHCAICETMAQKRQYASLT--------SLFAQLFIELAEWHSPLYLVIDDYHLITN 135 + AI + + ++ + + +PL L+++D H + Sbjct: 90 RRAVELPAIQRSALDAAFGLTHDVAPEHYRIAMASLDLVSEVAGDAPLLLIVEDAHWLDP 149 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF 195 P R + + + L+V +R+ +A+ + +L+ Sbjct: 150 PTADVLAFVARRIESDPVLLLVAARDGYPSALAD-------AGLPEHRLSGLDDATAATL 202 Query: 196 DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYL 255 ++ + +R+ + +G AL + + L Sbjct: 203 LDAVAPDLPRTARNRVLREAAGNPLAL---LELPAVAGEPDDEPSVAGGLPLTERLERAF 259 Query: 256 VDEVLDNVDLATRHFLLKSAILRSMND-ALITRVTGEENGQMRLEEIERQGLFLQRMDDT 314 V ++ TR LL +A+ ++ + L+ E D Sbjct: 260 AARV-SDLPDTTRLVLLVAALSDKDAVGEILQAAGTLAGASLDLDAAEPAADAGIADLDL 318 Query: 315 GEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLR 374 HPL + + Q A+ +H+A AE Q L + Sbjct: 319 RTLRFRHPLIRSAVAQSASL---ADRRRVHQALAEVLEDQDRRVWHRAALLTGAHEDVAG 375 Query: 375 DILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR 434 ++ A + + + +A + +L A L R V L+ Sbjct: 376 ELEAAGARARQRGAGAVAVTAMRRAAELGEPASRTRRLLAAAGLAVELGRPDVVAPLMRA 435 Query: 435 AEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVL 494 + V G+ L A G ++ +L Sbjct: 436 VRQLDLGQLDRARATWVE--ETAVTRPLGDAGRFASLISAAERAGAAGDRDLQVDLLWLL 493 Query: 495 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 554 T + L+ + ++++ ++ L + + +A Sbjct: 494 ASRAWWVDPGTDARRLLIDAAARLGDANAEDPRIFAVHAYADPLGHAAGVLERLTSAARA 553 Query: 555 FQLINEQHL-----------------------------EQLPMHEFLVRIRAQLLWAWAR 585 +L + +L L+ + A + Sbjct: 554 ERLDTDAARFFGPAALVVGAFDLGNDFLAAAIDGLRTEGRLGHLPRLLVLHANMAARLCD 613 Query: 586 LDEAEASARSGIEVLSS-YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 644 D A +A + +PQ ++ + RGD A E L+ Sbjct: 614 WDVAIPAAEEARRLAEELAEPQWSAAADTVIALVAAMRGDDQEADRLATEAE-LVAEPVG 672 Query: 645 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF 704 + ++ A R + G A A P + +H + W A Sbjct: 673 ANITMAFAQFGRTLAALAAGRHADAYASAARVFDPADSAHHPVISSWLIADLADAARQID 732 Query: 705 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 764 E A + L + ++A +AL + Sbjct: 733 EQTAARARVAQVEAMAGERPGTWIALSLRHARALVA--DPAEAGERFEEALAT-----DL 785 Query: 765 SHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNH 824 + + + + Q ++ + + + + + + Sbjct: 786 ARWPFQRARIQLAYGQWLRRDRRVAESRAVLRAARDTFDGLGCAPWGEQARRELRASGER 845 Query: 825 PEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQ 884 LT +E Q+ L G SN +I L ++ TI TH+ ++ KLG+ R Sbjct: 846 SRRRLPEARDQLTAQELQIAQLAAQGLSNREIGRRLYLSHRTISTHLYRVFPKLGITSRG 905 Query: 885 D 885 + Sbjct: 906 E 906 >UniRef50_Q9RD32 Putative transcriptional regulatory protein n=2 Tax=Streptomyces RepID=Q9RD32_STRCO Length = 888 Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 132/893 (14%), Positives = 250/893 (27%), Gaps = 69/893 (7%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAV---- 82 + ++ AG GKT L+ AA + +++ + + L + Sbjct: 19 ARHGCGGAVVLRGEAGAGKTALLDAAAARGEAMRVLRTGGVESESDLAFAALHQLLWPVA 78 Query: 83 -------QQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITN 135 + A +A L + A L V+DD+ + Sbjct: 79 GLLDALPAPQRDAVRAALGHVAGGAGDRFLLGAGVLSLLAEAAGPEGLICVVDDFQWVDR 138 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF 195 + R E + +V+ R + + + A + Sbjct: 139 ASADALLFAARRLGAERIAMVLAVRGDAPV---------RGVTSTVGVRGLPEDAAAELL 189 Query: 196 DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYL 255 + R P + AL IA + + D + Sbjct: 190 ESRHGMPAGP-VRGELIRLTGSNPLALNEIAARLTPAQLAGREPLPDPLPGGTRLFGDRV 248 Query: 256 VDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTG 315 + + R L +A+ + + + E +G L + +G Sbjct: 249 T-----GLSASARLVALLAAVETDLEVVMSAAERLVAGSGE-VALAELEGSGLAEVSGSG 302 Query: 316 EWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRD 375 F HPL + + + AE+ H AE AL G A + Sbjct: 303 LRFR-HPLVRSAIHE---AATPAEIRHAHAVLAELTGGDRRAWHLAGAAL--GHAEPVAV 356 Query: 376 ILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL--QAWLMQSQHRYGEVNTLLA 433 L A + +L + + V L A R G+ +LLA Sbjct: 357 ALEEAAERARDRGGYGAAAAALIRAAELTPEPRARAVRLKDAATAAWLAGRPGQAESLLA 416 Query: 434 RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATS- 492 A + E T+ E LR + +N GN EA R+ Sbjct: 417 EAAEGV--GGEITLAMEIAQLRGRFELNSGNAAEAVRILAAGDSLGILADAVEAASYVGD 474 Query: 493 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL-------------- 538 V + ++ T A +L++++ Sbjct: 475 TAAVVEFGRRAAAHPEGFLRDTVAGIGLTLDGDVAGPALLRRALARTDGLEDAAGYLWAA 534 Query: 539 ---FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 595 A G L A E E+A ++ + ++ A RL + A + Sbjct: 535 AAASALGELDVATEMAERAGRVARVSGMAG--QLPVVLEFVATAERLAGRLARSRAVSEE 592 Query: 596 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 655 G+ + + + + A + + +R + + A Sbjct: 593 GLALAREAGYENTVAAHLANLAVLAALRGEEEPCERHSREALAIALPHRVGLYAGVAAYA 652 Query: 656 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 715 + G A+A + R A H R + +G + A Sbjct: 653 PAVLDLCLGRYASAHDRFRALAVAGPGAGHPTVTWRSMPDRVEAAVGAGDEAGARAA--- 709 Query: 716 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 775 + ++ L G + L +AL+L E A Sbjct: 710 --VSAYARSTEHAATPESRALLARCRGLAESDEEALGEALRLHTNP-------FEAARTA 760 Query: 776 QQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSP 835 L + + P + +R Q +A + + + P Sbjct: 761 LLLGERQRRAQRPGQARAHLRRAWEIFEQAGARPWARRAQEELRAAGENAGAPPPSVLDA 820 Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 LT +E ++ GL+ G S+++IA +L ++ T++ H+ +Y KLG+ R D + Sbjct: 821 LTSQELRIAGLVAEGLSSKEIAAQLFLSPRTVEYHLYKIYPKLGIGSRTDLAR 873 >UniRef50_C7QAM0 Transcriptional regulator, LuxR family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QAM0_CATAD Length = 923 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 131/913 (14%), Positives = 252/913 (27%), Gaps = 71/913 (7%) Query: 22 LLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAA 81 L+A + + L L+ AG GKT L+ A +D+ + + + + L + Sbjct: 29 LVADVRDGMSSALVLV-GEAGIGKTRLLDHVAEVASDLHIVRVAGVETEARLGFAALHSL 87 Query: 82 VQQATNGHCAIC-----------ETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDY 130 ++ G + +A L + A + P+ +IDD Sbjct: 88 LRPFLGGLGELPTPQREALASAFGMLAGPPADRHLVGMAALALLAGGASVRPVLCLIDDA 147 Query: 131 HLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQE 190 H + R + + VV R L V + + Sbjct: 148 HWLDRESRDALAFVGRRLGADAIGFVVADREPVPGAFEGLTV--------MPVGGLSDTD 199 Query: 191 AKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH 250 A + ++ ++ A ++RI D G AL + + +A L + Sbjct: 200 AHELLGLNVAGRLDPAVAARIVADTGGNPLALLESIGAL--SLACLAGTAPLLGPLPVGS 257 Query: 251 LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQR 310 + +++ + TR FL+ + + L+ R GE E + Sbjct: 258 SLENYFGQLIQGLPDDTRTFLVLLSATPPEDALLLWRAAGELGIA---AEAVDAAMSAGI 314 Query: 311 MDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAA--G 368 + HPL + + + AAE +H A A + H A G Sbjct: 315 IARGRLVEFRHPLIRSAVY---RGADAAERRRVHAALAAASDPVHSRERRAWHRAEATIG 371 Query: 369 DALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEV 428 + D L + + + L S+ + + A Sbjct: 372 LDDEVADELDSASELARARGGYAERAALLAKAAQLSVGDRVLRFVEAARAHLLLGDPAAA 431 Query: 429 NTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI 488 +LL +AE + + + A +A I A + + Sbjct: 432 QSLLQQAEPVL-AGADPVLRARALHAKATTEIYFERIGGVLTRLLTAADTVADADPALSR 490 Query: 489 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 548 C +L + + L+ + L G A Sbjct: 491 SILMEGLLGALCGDLDPVALQQFGASVLTSPAIRSVQPTSADLLLRGFALRVDGDYPQAA 550 Query: 549 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 608 A ++ W EA+ Sbjct: 551 PVLRAALAAMSRDSEVIEHAVRPATLALYAADEVWDDRGGNEAALLVEAHERRVGALGAL 610 Query: 609 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS----------DWISNANKVRVI 658 L + L G A + L+ E+L S W K R + Sbjct: 611 RSTLVVRSTWELRAGRFAAAMACLDESEDLATVVGLPSPGQLLRVELLAWSGQEAKTRAV 670 Query: 659 YWQMTGDKAA-------------------------AANWLRHTAKPEFANNHFLQGQWRN 693 + GD A A + N + + Sbjct: 671 ADALIGDLATRHANSGLADWARNCLAVLDISLGRYAEAVANARVAFDTDNAGAVSRVLPD 730 Query: 694 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 753 + A + G+ + A+ L L + A L L ++ + Sbjct: 731 LVEAAVRCGDEQTAKDALRRLEQRALPAGTPWALGLLARSRALLADDDHAEALFAESVAL 790 Query: 754 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHF 813 RT ++ GE + ++ R+ L + Q + R + Sbjct: 791 LGSTRVRTELARTHLLHGEWLRRRRRRADARTELRTAYEMFDQMGAAGFAERARVELQAT 850 Query: 814 DENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRN 873 E+ +R + LT +E ++ GL +G +N +IA L + +T++ H+ Sbjct: 851 GEHARKRAGQTGQ-----SAHDLTPQERRIAGLAAAGATNAEIATRLFITQSTVEYHVNK 905 Query: 874 LYQKLGVAHRQDA 886 +++KL + R+ Sbjct: 906 VFRKLDITSRRQL 918 >UniRef50_C8XHS3 Transcriptional regulator, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XHS3_NAKMY Length = 959 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 133/945 (14%), Positives = 246/945 (26%), Gaps = 89/945 (9%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFA----------- 75 + A R+ LI G GKT L+ + A + Sbjct: 21 ARAGRPRVVLIEGAPGIGKTALLDRLAEDAAAADDVVVLRASGDLHEDLLAYGVLGQLAR 80 Query: 76 ------SYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDD 129 L ++ + +T L A S + ++IDD Sbjct: 81 SAGPATPGLPDLPDRSGPAVADPADPADSAPLADPITVGAQWLHRLDAMAGSVVVIIIDD 140 Query: 130 YHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS--QQLAFT 187 P + + R + + V +R + R +G+ + Sbjct: 141 AMWADRPSLLALVFALRRLVADRVLAVFATRERAAGDLPESLTRLITGHLGAVLRLSGLD 200 Query: 188 HQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGIN 247 +E + S + + + R+ + G + + ++ L Sbjct: 201 ERELRDLATALGVSGVGSTVARRLREGTDGNPLHARALLEEFPVTVWPVNRQDESLLPAP 260 Query: 248 ASHLSDYLVDEVLDNVDLATRHFLLKSAILR-SMNDALITRVTGEENGQMRLEEIERQGL 306 +LV + TR F+ A+L A + + G + ++E L Sbjct: 261 RP--FRHLVRSRYQHSAPDTRRFVDALAVLGLHAAVADVMAIAGLSDPVGPIDEATASDL 318 Query: 307 FLQRMDDTGEWFCY-HPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHAL 365 R D + HPL + A +H AAA + A Sbjct: 319 LRVRSADGPWSVEFTHPLVRAAVYD---AIGPAARYTLHTAAARVSADEAAALRHRVAAA 375 Query: 366 AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW-------- 417 D + D+ A + S + A + + +L A Sbjct: 376 TGPDERLAADLTDFAARAQRRFDWKSAAVHLVSASRLSRDPDRARRRVLWALIWTLMRGD 435 Query: 418 --------------------------LMQSQHRYGEVNTLLARAEHEIK-------DIRE 444 L + LL RA + E Sbjct: 436 AAAASDLVDEVTAYPPEPLRDLVLGSLAMAAEEPERAGQLLDRAWAACERACAADGSALE 495 Query: 445 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF---------------YSRIV 489 A ++A + + AL + + Sbjct: 496 GDDVAAVALMQAIAHYGRLDAAGTVAWCERALAAVGDRESGPDHPDRPDESDRMGPQTSI 555 Query: 490 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 549 + + + H G L R + + + L + + +A Sbjct: 556 HVAAVTYLAHGLGYLGRLDQAQAVVAAQRQPDESPYRWLNPRSALGVLHLVEDEFDSAAA 615 Query: 550 TQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQ 608 + + L F A+ W D+A+ +A + + L S + Sbjct: 616 VLGSVAASASRIGV--LNTAAFSYAYLARAQWMAGDWDDAQVNADRAVSINLESDLGFLR 673 Query: 609 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 668 + + + ARGD A L L + + + A D A Sbjct: 674 SAVVGIAVLVPAARGDWAAAEQHLRLLPRSQVHYERSIVALGLARARVGEARGRPRDVLA 733 Query: 669 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 728 A + + + + A A + +G A+ L + A+ + + Sbjct: 734 ALDRVHQFPIRDAVDEPGFWPWPDLYADALVAVGRAAEADQFLLSHEQRAQQRGRPTAIA 793 Query: 729 RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLP 788 R ++ R AQ AL + E + ++ + Sbjct: 794 RLARSRGRVEAALDRPEAAQAAFDRALTVVGTVRAP----FERARIELAAGEVARAAGNR 849 Query: 789 ELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIY 848 +A + + LT +E V L Sbjct: 850 RRAVELLLAARAGFLGLGATPYAQRCDAELAAAGLATADRPGGPRFGLTAQELVVARLAA 909 Query: 849 SGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 G SN QIAGEL V+ T++ H+RN + KLG+ R+ QL Sbjct: 910 DGLSNRQIAGELVVSIKTVEYHLRNAFAKLGITSRRQLADRLAQL 954 >UniRef50_Q128D5 Transcriptional regulator, LuxR family n=1 Tax=Polaromonas sp. JS666 RepID=Q128D5_POLSJ Length = 895 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 142/923 (15%), Positives = 256/923 (27%), Gaps = 79/923 (8%) Query: 8 SRPVRLDHTVVRERLLAKLS------GANNFRLALITSPAGYGKTTLISQWAAGKNDIGW 61 S R V R+ +L L ALI AG GKT+L++ A + + Sbjct: 16 SPGNRSIELVERDAVLHALDDRLRSVARGTGHTALIAGEAGIGKTSLLNALAERRGEANL 75 Query: 62 YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHS 121 + Q + L + + G + S +LF + EL + Sbjct: 76 WWGACDALQTPHPLAPLQDIARSSEVGFRPLL------GGDGSRAALFEAVLTELQQSRR 129 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR----DQLL 177 P +VI+D H + + R LV+ R+ LR L Sbjct: 130 PTLVVIEDAHWADDATLDLLKFLGRRIDRAACLLVISYRDDELTPAHPLRRLLGELPGSL 189 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + + C L SP I G + + + Sbjct: 190 VTRVDLPRLSPAAVELLARCALRSP------DGIYSATHGNPFFVTELLRHGIDGVPRSV 243 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRS-MNDALITRVTGEENGQM 296 + LV + + + ++++ + + L+ + G Sbjct: 244 QD---------------LVLARFARLSPGAQAVVKLASVVPAKIEQWLVEALLGTN--VA 286 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG- 355 +EE GL H L + +A +H + ++ + + Sbjct: 287 LIEECLNSGLLTTAASALCFR---HELARVAIETSLSEPVA---RALHASVLDALVREDK 340 Query: 356 ---FPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKAL-------PWDSL 405 + +HHA + D+ + A +A Sbjct: 341 LLVSLARLVHHATQSSDSAAVLRYAPEAARQAQQRGAHREAAAHYRAALQYAKGAGEADE 400 Query: 406 LENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNP 465 + + A Q + E R + AE + A V + Sbjct: 401 AQRAAWLDAYAHECQLTDQLNEAIAARLRLGEVHRRAANALGEAENLSQLALVYVLALRN 460 Query: 466 DEAERLAKLALEELPPGWFYSRIV-ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 524 +A+ ++ A+E L P R+ A V ++ + S+A + ++A Q + Sbjct: 461 TDADAASRRAIELLEPLPPGVRLAGAYRVEAQLRMLNRDCEVSVAWGSKALRLAEQFEHR 520 Query: 525 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 584 ++ ++A L L + Sbjct: 521 EILGAAVSTLGTATMFID-YDAGCAHLQRALDLALADGL--HYIAANTYSNLGSGSGELF 577 Query: 585 RLDEAEASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK 643 RL EA+ I ++ + A L C + G D+A ++++ Sbjct: 578 RLREAQRYLTQAISFAQQHEIDFYRNYSTAWLALCEMYLGRWDDAAEH---AQDIVQQTT 634 Query: 644 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI-ARAQILLG 702 + + A G+ A ++ R A A L G Sbjct: 635 HRTTSRIMALVALGRLRARRGEPGVAEVLDEALELALASDTLQRIAPVRAARAEAACLRG 694 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 + A + A R + +++ A V Sbjct: 695 DLRAAAEEARSVLTLATHHRHPWFTGELAYWM--------KRAGALDVAPLPCAQPFALQ 746 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAH-----FDENF 817 H+ +A A Q L E ++ + L Q A Sbjct: 747 IAGHWREAAQAWADLGCPYEQARALSEGDEGSQPQALTLFEQLGARPAADGLRRQLRAAG 806 Query: 818 VERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQK 877 + L LT RE +VL L+ G N +IA L + T+ H+ ++ K Sbjct: 807 LRGLPRGMRPSTQTNPHQLTAREIEVLLLLCEGLKNSEIAERLCRSVRTVDHHLAAVFTK 866 Query: 878 LGVAHRQDAVQHAQQLLKMMGYG 900 LGVA R +AV A YG Sbjct: 867 LGVASRTEAVAAALHAGIASQYG 889 >UniRef50_D2B5P2 ATPase-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B5P2_STRRD Length = 928 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 122/923 (13%), Positives = 238/923 (25%), Gaps = 78/923 (8%) Query: 15 HTVVRERLLAKLSGA------NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGD 68 + R A L R+ ++ G GK+ L+ + + Sbjct: 23 GLLGRGAECALLDQLIAAVRMGESRVLVVHGAPGVGKSALLEYAENSATGMRVLRAVGVE 82 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMAQK-----------RQYASLTSLFAQLFIELA 117 ++ E + L + ++ L L + A Sbjct: 83 SEMELAFAALHQLCAPLLDRLESLPTPQRDALETVFGMREGMPPERFLVGLAVLSLLSDA 142 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 PL V+DD + R E++ LV SR R +D L Sbjct: 143 SEGGPLLCVVDDAQWMDRSSAQVLGFVARRLLAESVALVFGSRR---------RAQDLLG 193 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + +A I+ R + G AL + + Sbjct: 194 LPELEVTGLKAADAHALLSSVTHVRIDQDIRDRFVAETRGNPLALLELPRELAVTQVAGG 253 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + +L ++ + TR LL +A + +L+ R Sbjct: 254 FGLLDADTLPGRIEQSFLTR--IEGLPKQTRLLLLIAAAEPVGDPSLVWRAAERLGVTPA 311 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 L+ HPL + + + + +H A AE AQ P Sbjct: 312 TVLASGTDGLLEF---DVRVIFRHPLVRSAVYGSAKE---GDRRAVHLALAEVTDAQADP 365 Query: 358 SEAIHHAL---AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLL-ENPQLVL 413 H AA D + ++ + + + +++ + L Sbjct: 366 DRRAWHLATATAAPDETVAAELERSAGRAQARGGLAAAAAFLQRSVALTIDTSRRAERAL 425 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 A + + A+ D + + + R + G +EA + Sbjct: 426 TAADISLRAGDIEAARRFVDIADR---DAQSEFQRVRAHLARGHITFAAGFNNEAPLMLL 482 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 A + L P + SL + + + L+ Sbjct: 483 TAAQRLEPFDMDLARETYFIAWGSASFGAANRDSLMAISRAMREL-PSPEGRPRALDLVL 541 Query: 534 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW----ARLDEA 589 + L A T ++A + + ++ L + + LLW A Sbjct: 542 EGYALLITDGRSAALPTLQRAKTALADHPVQDLLKWGWAACGVSALLWEDRIMPDMPARA 601 Query: 590 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL-------------- 635 R+ + L +L A L + Sbjct: 602 LEEVRTAGALSELPIYLHALGIPILLSGEFAAAAALVAESEAVADATGVPMTQHTQLLLT 661 Query: 636 ------------ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 683 S ++ + A L + AN Sbjct: 662 AMQGKEAEAAALIAATIEEAGASGQLNGVASAHWAAAVLYNGLARYGLALPAARATQSAN 721 Query: 684 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 743 Q + A +G+ A LE L + A L A Sbjct: 722 PIVSQWALPELVEAAARVGDDTAARGALEGLADAAEPCDTDWAQGILARCRALLSDAAAA 781 Query: 744 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREIN 803 + + + R ++ GE + + ++ L + + Sbjct: 782 DDLYREAIERLGRTILRPELARAHLLYGEWLRRDRQRAEARAHLRTAYEMFVSTGMEAFA 841 Query: 804 QHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVA 863 + R + E +R + LT +E Q+ L+ G SN +I L ++ Sbjct: 842 ERARRELLATGETVRKR------KHGASTSDELTAQEKQIALLVRDGLSNPEIGARLFLS 895 Query: 864 ATTIKTHIRNLYQKLGVAHRQDA 886 T++ H+R ++ KL ++ R+ Sbjct: 896 PRTVEWHLRKIFTKLRISSRRQL 918 >UniRef50_D2PVL9 Transcriptional regulator, LuxR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PVL9_9ACTO Length = 971 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 151/981 (15%), Positives = 273/981 (27%), Gaps = 105/981 (10%) Query: 9 RPVRLDHTVVRERLLAKLSGA------NNFRLALITSPAGYGKTTLISQWAAGKNDIGWY 62 P V R +A L A L++ AG GKT L+ + A G ++ G+ Sbjct: 4 VPWTSTPLVGRSTEMAALLSAVDDAKTRRAGAILLSGDAGVGKTRLLDEVATGAHERGFG 63 Query: 63 SLDEGDNQ-QERFASYL-----------------------IAAVQQATNGHCAICETMAQ 98 L E YL A+ + H I + Sbjct: 64 VLVGHCTDFGEAGLPYLPFSEIFGRLAGERPDLVDSVLTNFPAIGRLLPTHRLIGAQPSP 123 Query: 99 KRQYASLTSLFAQLFIELAEWH--SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLV 156 + +LF + PL ++I+D H + R + L L+ Sbjct: 124 QEGQLDRAALFDAVLGAFTALSTSEPLVVIIEDAHWADDSTRDLIGFLLTRLTSQRLALI 183 Query: 157 VLSRNLPQLGIANLRV-----RDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRI 211 V R+ LR E++ L+ P+ AE+ RI Sbjct: 184 VSYRSDDLHRRHPLRRPIGEWSRNPRVRRVSLNPLDADESRALLTALLTEPLPEAEARRI 243 Query: 212 CDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFL 271 + G A + + +A A L+ LD + R Sbjct: 244 LERAGGNAFFTEELVAAASMGDADAVPPDLAD-----------LLLVRLDPLSDDARQVA 292 Query: 272 LKSAILRS-MNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQ 330 A+ ++ L+T V G ++ E + ++ H L + Sbjct: 293 RVIAVAGRRVSHQLLTAVAGLPERELETALRELIDAHIIEHPGNASYYFRHALLAEAVYD 352 Query: 331 RCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHS-- 388 + A + G +E HA + D + + + + Sbjct: 353 DLLPGERVRQHAAYAKALQDQTVAGTAAELAGHATRSHDLATAFEARVRAGQEAISVAAP 412 Query: 389 -----ELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIR 443 + E L DS ++ LV+ A ++ LL ++ ++ Sbjct: 413 QEALKHFEMALELLPNAAADSPIDKTWLVVQTATAATLSSQHLRAVKLLRKSLADLGPDA 472 Query: 444 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS-RIVATSVLGEVLHCKG 502 A+ A +A+ + +EA A + + ++ V G Sbjct: 473 PKLQRAQLLLPLADIALIIDHDNEAHEAISQAFRLMADEPAGVFKAQVVALYARVSDALG 532 Query: 503 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 562 + + Q+AR+ A + I +++ G A + E+A Sbjct: 533 RPMEAERWAHEALQIAREIGQESAAGDAGITLAQLRKRAGDPVAAAKQLEEAAVRAQLSG 592 Query: 563 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ---CLAMLIQCS 619 + + + L A+ + + Q ML Sbjct: 593 DAAAEVRSRY--LLGANHYDLGDLVSAKTALQYAARRAGELGRQWAAYGFDARRMLALTH 650 Query: 620 LARGDLDNARS-------------------------------QLNRLENLLGNGKYHSDW 648 A G+ D A + L+ L Sbjct: 651 FALGEWDEAAATARPDAMTPAAAEAGLRSVGLTVRGGRGDTSVAEDLQRLRKWWTLDVMV 710 Query: 649 ISNANKVRVIYWQMTGDKAAAANWLR---HTAKPEFANNHFLQGQWRNIARAQILLGEFE 705 + V ++ G A A + F + F+ + Q+L Sbjct: 711 PLIGLQPAVEAYRQLGQVAEAEKLIADVTALLTDVFQSEWFMARIRFSTLGLQLLSQRVV 770 Query: 706 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS 765 EL + L L + R+ + +L G Sbjct: 771 SEPTAAAELVARGQDLLADGHATAEKGLPPGRVLGVEGIAWLARLEAEWERLRWLAGIDP 830 Query: 766 HFVIEGEAMAQQLRQLIQLNTLPELEQHRAQ---RILREINQHHRHKFAHFDENFVERLL 822 E A Q+ + E R + + ++ A L Sbjct: 831 PTAEEHVATWQRTVDAFGFGYVSEQAWSRLRLSDALRAAGRVADANEQAQLAAETARELG 890 Query: 823 NHPEVPELIRTSP------LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQ 876 P + EL + LT RE +VL L+ G +N Q+A EL ++ T+ H+ N+ Sbjct: 891 AKPLLEELGSAAEPAGAAALTARETEVLALLAEGRTNRQLARELYISEKTVSVHVSNILA 950 Query: 877 KLGVAHRQDAVQHAQQLLKMM 897 KLGV R +A A++ + Sbjct: 951 KLGVRSRTEAAAVARRDGLLD 971 >UniRef50_A1R4G6 Putative transcriptional regulator, LuxR family n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R4G6_ARTAT Length = 888 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 143/910 (15%), Positives = 277/910 (30%), Gaps = 48/910 (5%) Query: 9 RPVRLDHTVVRERLLAKLSGANN---FRLALITSPAGYGKTTLISQWAAGKNDIGWYSLD 65 P++ +H V R+ L + L+ + G GKT L ++ AA Sbjct: 1 MPMQAEHLVGRDAELELATEILRQEGAGAVLLVADPGIGKTALAAEIAARLAGEMVVMRV 60 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYL 125 G ++A + A L ++Q + L L Sbjct: 61 HGSPALSAVPYGVLA-------PYLLDLPLEQATSPVAILREFWSQFEKRRGGEGARLLL 113 Query: 126 VIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLA 185 ++DD H + LV SR P L A L++ L + Sbjct: 114 IVDDAHNLDEGSTQILAELV---TAGWARLVATSRPRPGLPAALLQLWYDGLAERLELHP 170 Query: 186 FTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAG 245 + + + L + ++ + + G L + ++ + + ++ L Sbjct: 171 LDKETVTELAEKTLGGTVMSSAAEVLHSVSEGNPLLLHCLLEDSKADGNLVRRNGVWLLT 230 Query: 246 INASHLSDYLVDEVLDNV---DLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIE 302 S + L + V + V A R + A+ + A++ G + + + Sbjct: 231 RALSGSGESLAEVVRNRVLRTSEAEREAMYVIALSEPVPAAVLDTQVGRDT----VRALM 286 Query: 303 RQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE--- 359 L L G +HP++ LR+ A +I + + + +E Sbjct: 287 DSRLVLSANGPGGPLKMWHPMYSEALRKIVS---PARSLQIRQRMVQQLPPEPSTAEGLL 343 Query: 360 -AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 + AL G + +L A+ + L + + ++L P+ + A + Sbjct: 344 RMVSWALDCGADVDDERLL-QAAFLAAKLLQNPLAMAAAGKVRSEAL--RPRARAVMALV 400 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL---A 475 + Y LL + + A A+ A+ D + D A Sbjct: 401 NYNDGDYRAAVRLLEGGSGFLDADPLGPVGAGLLWAAARFALGDSSADIAAAARTAATAL 460 Query: 476 LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-----WHYALWS 530 ++ P ++++ L L + E+ A ++ Sbjct: 461 IDGQPARDPAVQLISRHAHAIGLRALAHEGSFEDLRKGLERFAEALGSEGPDLAMDRIFL 520 Query: 531 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 590 L Q E+L +G A E +A ++ E H + L +F++ + AE Sbjct: 521 LAMQCELLTVEGQAVQALEAGREALLVLEEHHKDLLYFSDFVLLRYTLAALEAGDWEAAE 580 Query: 591 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 650 ++ + + L +G L+ A L L K + Sbjct: 581 SALDRHAAGSAMGLIYFGAGIEVLKGMSMLRQGRLEKAAELLTPAVEAL-RVKDPLQLRN 639 Query: 651 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH--FLQGQWRNIARAQILLGEFEPAE 708 N + +G+ A + + L +R + G + Sbjct: 640 LGNALAFYAAAKSGNAVLAQRLASERGEAAAGGAYVEALAELFRLAGEELVTKGTGLQSL 699 Query: 709 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL------DALKLANRTG 762 L E + R ++ L + + A + +L A G Sbjct: 700 RRLPESEDLHRLPGILMQNLVLRAELGDVQAMESIQETASSMAGGWAGGWQSLAAAQLGG 759 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 FV G +A + + E + L Sbjct: 760 EGQGFVNAGNLLAASGMPGPAAVAFDKAAVTFDAEG-KRPEARQAAVLRDVSEASLGDAL 818 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 H E R+ PLT+RE ++ L SG ++ QIA +L V+ T++ H+ Y KLG+ Sbjct: 819 VHDPHTETDRSVPLTRREQDIVALAVSGLTDRQIAEKLMVSVRTVEGHLYRSYAKLGIRR 878 Query: 883 RQDAVQHAQQ 892 R+D + Sbjct: 879 REDLGAAVRH 888 >UniRef50_D2B675 Transcriptional regulator, LuxR family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B675_STRRD Length = 967 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 148/981 (15%), Positives = 267/981 (27%), Gaps = 118/981 (12%) Query: 11 VRLDHTVVRERLLAKLSGANN------FRLALITSPAGYGKTTLISQWAAGKNDIGWYSL 64 V RE LA L+ A L+ AG GKT LI +A + G + L Sbjct: 9 AVSPVFVGREAELAGLTEAFEQARNNAAAAVLLGGEAGVGKTRLIGCFAERASGDGAHVL 68 Query: 65 DEGDNQQER---------------------------FASYLIAAVQQATNGHCAICETMA 97 G + + + Sbjct: 69 IGGCVELSAEGLAYAPFTAAIRQLVREYGAEEVAALLPDGAARDLARLLPEFGEPSGDAE 128 Query: 98 QKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVV 157 A L L LAE P+ LVI+D H + + +++ Sbjct: 129 TDTARARLFEQILNLLERLAE-RRPVILVIEDIHWADRSSRDLIAFLSRNLRTAPVLMIL 187 Query: 158 LSRNLPQLGIANLR-----VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRIC 212 R+ LR + + TH E L + E A ++ Sbjct: 188 TYRSDDLHRQHPLRPVLAELGRLEGVLRLDLPRLTHDEVAAQMAGILGTAPEFARVGKVF 247 Query: 213 DDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLL 272 G ++ + + + + + + + T+ L Sbjct: 248 QRSEGIPLFVEALVECGAECSFPESLHDLIIGSV--------------EQLPDETQRMLR 293 Query: 273 KSAILR-SMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQR 331 +A + L+ V+ + + + ++ D + H L + Sbjct: 294 IAAAGGIRVGHDLLAAVSRLSDVDLEDALRPAIASNVLQVADGRAYAFRHSLIREAVHDE 353 Query: 332 CQWELAAELPEIHRAAAESWMAQGFPS-------EAIHHALAAGDALMLRDILLNHAWSL 384 L E +H AE E HH +A D L A Sbjct: 354 L---LPGEHVRLHARFAEEIGRDRTLVPHGRAAIEIAHHWYSARDDLWALVSAWEAAGKA 410 Query: 385 FNHSELSLLEESLKAL----------PWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR 434 + + L+ + ++ ++ + + + Sbjct: 411 AKTFAYNEKLQLLERVLTLWGKVPDAAERIGADHTTVLEQASEAAHACGEIERGTRFVKA 470 Query: 435 AEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVL 494 A E+ + + AE RAQ ++ P + L E L P R S L Sbjct: 471 ALEELDEETDPARVAELLVRRAQFKMSKRKPGALDDL--RYAERLVPQPGPERAHVLSKL 528 Query: 495 GEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 554 G L GE+ AL ++ ++AR+H L+ + G L A Sbjct: 529 GSFLAFSGEVAEGTALTEEALEIAREHGDECLEADLLLNLALGHSIAGCLDETIAVNSTA 588 Query: 555 FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ---------- 604 + ++ + + L R EA A G + Y Sbjct: 589 QAIGERVGSGRIILRAMSNNV--DALNNMGRSAEAIELALEGELLARKYGRFRISGTFIA 646 Query: 605 -----------------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRL 635 + + + + ARG+ D +S L + Sbjct: 647 NNRAEALEALGRFAEAAEVAERALTMDPTLRTRHHLRRIRADVAAARGETDVIKSVLTEV 706 Query: 636 ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 695 + G ++ + +NA ++++ + G+ AA + + G Sbjct: 707 DAFGGREEFTQELAANA-RLKMGLHMLNGEPLAALEVAEEVVSTARIMSKPMLGWRMLAL 765 Query: 696 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 755 + + A L ++ + + + A Sbjct: 766 LSGVCEATETFAPERAAALRAQIEETGSAMSVDSPVAEAYRFCLNRDHDAAATAWERLGR 825 Query: 756 KLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE 815 + A ++ + P ++ EI R E Sbjct: 826 PFLRARSLLQAGRAAAGAGDREGAAVRLRTAYPIALALSTPPLITEIESLARRVGVTLTE 885 Query: 816 NFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLY 875 P P PLT RE +VL L+ G SN IA EL ++A T+ H+ N+ Sbjct: 886 ETAPSASLLPAAPPSSLPPPLTPREQEVLRLVTQGRSNRDIAAELFISAKTVSVHVSNIL 945 Query: 876 QKLGVAHRQDAVQHAQQLLKM 896 KLGV+ R +A A +L + Sbjct: 946 GKLGVSTRGEAAAAAHRLALI 966 >UniRef50_C7QAL5 Transcriptional regulator, LuxR family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QAL5_CATAD Length = 953 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 129/934 (13%), Positives = 266/934 (28%), Gaps = 70/934 (7%) Query: 16 TVVRERLLAKLSGANNFR------LALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDN 69 V R +L+ LA++ AG GK+TL+ A+ +D S GD Sbjct: 19 FVGRADERRRLAECAGRVRNGDAWLAVVEGEAGIGKSTLVRHLASTLSDFTILSA-IGDQ 77 Query: 70 QQERFASYLIAAV-----QQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLY 124 + F + + ++ + + + + ++ L L E P+ Sbjct: 78 SETEFPGGVCGQLTQRVDREVLSSFPLLADAASAGLPPHAIGGQLLLLLGALQEARGPVA 137 Query: 125 LVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE-IGSQQ 183 +++DD + R + + +V+++R+ R+ L + + Sbjct: 138 VIVDDVQWADALSMQTLGFVLRRLWADRVLVVMVTRSDQDNVSEMDRLIRSLERTVHLKV 197 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 E + +P R+ G ++ + T R Sbjct: 198 GGLDDSEVAELVKGLTDAPPTPPLIRRLRAYAHGHPLYVRTVLSEVPVETLRDDALDRWP 257 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILR-SMNDALITRVTGEENGQMRLEEIE 302 + + + +D + + L A+L + A + ++T + L Sbjct: 258 VPRSLLVG----IKDQMDRLPPESVELLEAMAVLDTRLPLATVAQLTQLADPARALGPAL 313 Query: 303 RQGLFLQ-RMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI 361 GL + + H L + + +H AA + + Sbjct: 314 SAGLAVWWPTESQSPVALVHALQRDAVYD---AIDPERRRALHAGAAALVGPAASWAHRV 370 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 A + AL + + L+ + +S + + +L Sbjct: 371 AAADSVDAALAAELEASAMGEAATGRNALAATRLLWASALSESREDRERRLLTACAQSLV 430 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKL------- 474 + L A E + + L ++ + EA A+ Sbjct: 431 TMQPVAAAKLRAEVEDCAPGALRSCVLGGLDMLDNRLVEAEARLAEAWEQARTDPGSGWL 490 Query: 475 ------------------------ALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLAL 510 A + L G + + +AL Sbjct: 491 AVLAGTFLTVLMMRNVRGAETAAVAAQTLAVGDLDPATTDFTRAVMATGRMWDQGPRVAL 550 Query: 511 MQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 570 A ++ L +L + + G L+ A A +Q + + Sbjct: 551 ADLGHLPAEASAATNHQLDTLATRGVMRLFLGDLEAARRDL--ALVARRDQQGAGSRLSQ 608 Query: 571 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ-CSLARGDLDNAR 629 F + + A + ++++A + +++ G D+AR Sbjct: 609 FSLSLLAVADYLSGDWTASQSAAEQALAIVAVQGNVLGDAAAEFAAVCVHAGSGRWDDAR 668 Query: 630 SQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN----- 684 ++ L +L + + + A + A+ Sbjct: 669 RHVDTLSHLTQMIGTPVELVYGVLAEATVAQARADYGAMLRALRPALDDRDRADAGGEVR 728 Query: 685 ----HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 740 F Q + + + + A L+EL AR L +L Sbjct: 729 VRYEPFWLWQQSLLVEGLVGTEQLDHAARALDELR--ARHDGTGYLEVVVARLAGRLAEA 786 Query: 741 AGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQ---R 797 GR DA ++ L S +AM +Q + T + A+ Sbjct: 787 QGRPRDALKIYEKVLSQTPDPTNPSASAPLHQAMLEQAHGRLLAATGAAPRREAARWLRT 846 Query: 798 ILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIA 857 + F E + + R LT+RE V LI G +N + A Sbjct: 847 AHDRFSTLRATPFLERCEADLSAIGLAAPAGTATRVLALTEREMSVAYLIADGRTNREAA 906 Query: 858 GELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 EL V+ ++ H+ N+Y KLG++ R+ + + Sbjct: 907 AELYVSPKAVEYHLSNIYAKLGISSRRQLAEALR 940 >UniRef50_Q0H2W0 Putative regulatory protein n=1 Tax=Actinomadura melliaura RepID=Q0H2W0_9ACTO Length = 933 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 132/916 (14%), Positives = 266/916 (29%), Gaps = 74/916 (8%) Query: 29 ANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFA--SYLIAAVQQAT 86 + L+ P G GK+ L+++ + + + R + L++ V + Sbjct: 36 HRRSGILLLEGPPGIGKSRLLAEVRHLALEQAFNVSHVTADPVLRLMPMAPLLSLVDPSP 95 Query: 87 NGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFI 146 +G A + + + +E +P +++DD H + + Sbjct: 96 HGRAATRDPLPSASDPHGKVIQYVGARLEERAAQAPTLIILDDLHWADSATLLAVRLLPA 155 Query: 147 RHQPENLTLVVLSRNLPQLGIANLR---VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPI 203 R ++ V + + + D L + E Q RLS+ Sbjct: 156 RLAGSSIVWVFAKTSGKGDQSHDHLYDLLEDGLRATRRTLPPLSESEMAQVVKDRLSATP 215 Query: 204 EAAESSRICDDVSGWATALQLIALSA----RQNTHSAHKSARRLAGINASHLSDYLVDEV 259 + + + G + + + + T L L+++ Sbjct: 216 DR-HLKALVANADGNPSLVVELLEGLVEEGKIQTVKGVARLVSLGRTALPERFRTLINKR 274 Query: 260 LDNVDLATRHFLLKSAIL-RSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWF 318 L ++ + R L +A+L + + + + + + E E L F Sbjct: 275 LADLSTSARQALDIAAVLGPTCSLDDVAEMLSTKAASLVPEFQEAMEARLLTSRSDEIAF 334 Query: 319 CYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF-PSEAIHHALAAGDA--LMLRD 375 + ++ + + +A +HR AAE A+G E H + + Sbjct: 335 VHEGIW----QTVWESVPSAVRAALHRQAAEMLTAKGSSLVEVATHLIHGAQPSDAEAAE 390 Query: 376 ILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLL--QAWLMQSQHRYGEVNTLLA 433 +L A E +++ L +L L M L Sbjct: 391 VLCRAAEEAVTVDPKRAAELAVRGLEVAEAGTGYRLSLACNAVRAMALVGPLDRAVELAE 450 Query: 434 RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP------------- 480 R + E + A + G E P Sbjct: 451 RELEGARGQGESIPLRLWLAAALLLRGQAGRARELAEELLAHAHLPPEVRDTLQNTRLLA 510 Query: 481 --------------------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 520 P R+V ++L KG LT L L ++ + + Sbjct: 511 IAEESSSAAARSATEMTTRQPVRSPGRVVGLTILARERWQKGRLTEGLRLAREATDLLER 570 Query: 521 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 580 + + + + +L G A E+ ++ + + + + A + Sbjct: 571 DERVPWYVTPQTTLTTMLVVLGSYDEASSLVERLRDDLSVKGAQ--VLAGLSRMLEALIH 628 Query: 581 WAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 639 R D+A + A++G+E + PQ +L +L RGDL E+ Sbjct: 629 LGVGRPDKAASEAQAGLEASADAGSPQLTWLAWLVLATLALRRGDLAA------AAEHTA 682 Query: 640 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL---QGQWRNIAR 696 + ++ GD A L + H L + +AR Sbjct: 683 QAESVPGIPLPVLLWLKGQLAAAEGDLPRAMEVLTPLYEDLELRTHLLSNSRIAAAWLAR 742 Query: 697 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 756 + G A V A +S + G ++L A+K Sbjct: 743 TALAAGLPHRAVAVTSTAERIAADNPELSSMLTA------AAHARGILDGDTQMLDHAVK 796 Query: 757 LANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDEN 816 E +A L + + LE + + + Sbjct: 797 EHTD---PWERASAAEDLAAALADTDREAAVYWLENALVGYEAVQAGRDSARVRLRLRDM 853 Query: 817 FVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQ 876 V R LT+ EW V + G +N+Q+A + ++ T+ H+R +++ Sbjct: 854 GVRRRHWSYAKRPATGWESLTKTEWAVATFVAQGLTNKQVAKRMFLSPHTVGFHLRQIFR 913 Query: 877 KLGVAHRQDAVQHAQQ 892 KL + R + + Q+ Sbjct: 914 KLEIRSRVELARLGQE 929 >UniRef50_A8L327 Transcriptional regulator domain protein n=1 Tax=Frankia sp. EAN1pec RepID=A8L327_FRASN Length = 1102 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 114/622 (18%), Positives = 202/622 (32%), Gaps = 36/622 (5%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAG-KNDIG 60 ++ +++ P + R RL L +R+ + +PAG GKTTL+ + A Sbjct: 42 ILAARVRLPAPAG--MHRPRLAGPLIVPAAYRVGTVVAPAGAGKTTLLVEVAQACAWPTA 99 Query: 61 WYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWH 120 W +LD+ + F H A S TS+ + Sbjct: 100 WLTLDDRIGGLDSF------------LAHLHAAAAAAAGLPAGSWTSIENAIVDLDRHLT 147 Query: 121 SPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIG 180 L +V+DD H + +++ + + P + ++V +R P L + LR+ Q+ E+ Sbjct: 148 DNLLIVLDDLHAVDGQPAEAAVQLLLDYLPPKVRVLVAARWRPNLDLHRLRLAGQIREVD 207 Query: 181 SQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSA 240 + L F E ++ F + E + + GWA LQL L+ R S Sbjct: 208 ADALRFRTWEVEELFRDCHGVRLRPEEVTALTRSTDGWAAGLQLFHLATRGRPASERAKI 267 Query: 241 RRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE 300 G N +YL VL V R FL+++++ + + + G ++L E Sbjct: 268 LSGLG-NTRLTREYLTMHVLSAVSADERDFLVRTSVFDRLTEKRCDSLLGRTGSGLQLAE 326 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELP-EIHRAAAESWMAQGFPSE 359 +ER+GLF DD + YH + L +R E E E+H AAA G +E Sbjct: 327 LERRGLFTFVEDDGRT-YRYHEVLRIHLLERLVLEHGEERAQEVHGAAARLCEEDGALTE 385 Query: 360 AIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLM 419 A+ +GD +R +L L + + LP +P ++L A + Sbjct: 386 ALLSYCRSGDWEQVRRLLGQGGRRLADDP-----AAWFELLPAAIRDSDPWVLLAMARRL 440 Query: 420 QSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL 479 + A +H E L + R + L + Sbjct: 441 AADGSLEAAADTYRDAATAFGSETPARVHRELAELDDWLHPAPRRGTTWLRTLRAVLADP 500 Query: 480 PP--GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 537 P V G GE+ + V + Sbjct: 501 GPHVEGSADPPQTALVRGIAAFVAGEIALARQRFDTITAGIGASPVIETVAAVGRAACAL 560 Query: 538 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 597 L E A +L+ + ++ + + Sbjct: 561 LTQDAQAGETVEEGVAAAELLGHAAVLRVAAAVRALY-----------FGYGNRHVLHLL 609 Query: 598 EVLSSYQPQQQLQCLAMLIQCS 619 + + + L +L + Sbjct: 610 DAAGRAGDRWGVGALVLLGSFA 631 >UniRef50_A3PTZ1 Regulatory protein, LuxR n=3 Tax=Mycobacterium RepID=A3PTZ1_MYCSJ Length = 919 Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 140/946 (14%), Positives = 256/946 (27%), Gaps = 102/946 (10%) Query: 13 LDHTVVRERLLAKLSGANNFR-----LALITSPAGYGKTTLISQWAAGKNDIGWYSLDEG 67 + R+ L+ + + + ++ G GK+T+ G+ L Sbjct: 2 PLQLISRDAELSAVDDLLSAVPTGTCVLVLEGDVGIGKSTVWRAGIERARTRGFRVLAAH 61 Query: 68 DNQQERFASYL----------------IAAVQQATNGHCAICETMAQKRQYASLTSLFAQ 111 E A+Y + A Q+ + + Sbjct: 62 PVSSESVAAYSSLAELLADVDTEVLDHLPAPQRVAIDRVLSRADDTGPGTDQRAVAAAVR 121 Query: 112 LFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR 171 +E SP+ + IDD + P + R + +V R+ L Sbjct: 122 SVLERLAHDSPVLVAIDDLQWLDPPTA-AVLASVARRSAGAIGFLVTVRSGAGDHTETLL 180 Query: 172 VRDQLLEI-GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSAR 230 + + ++ T +L + + + +G +A + Sbjct: 181 EPSRPERLHRARVHPMTVGGLHAMISHQLGRSLTRPRMDWVYEVSAGNPLYALELARALD 240 Query: 231 QNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTG 290 ++ LA LV + + TR LL +A + S L+ R G Sbjct: 241 RDATGVGPLPATLAD---------LVRTRISGLPDHTREVLLATACIASPTVDLVARAVG 291 Query: 291 EENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES 350 + E + + + F HPL + A E +HR A+ Sbjct: 292 DNVEWTVAALEEAERHGVVEITGYKVTFS-HPLLARGVYAEAS---ADERRWMHRRLADI 347 Query: 351 WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQ 410 + + + G L A S+ + E L + + P+ Sbjct: 348 VESPESRARH-RALSSDGADEQTVKALDEAAESVHLRGAPATAAELLD-MARARGGDTPE 405 Query: 411 LVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER 470 L A LL A + +I + A L V + + EA Sbjct: 406 RTLRAAACHFEAGDAARARVLLEHA---LSEIPPGELRARALQLLGLVRLYANSSSEAVP 462 Query: 471 LAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY---- 526 + + A+ E P R+ +L + G R++ ++ A Sbjct: 463 MLEQAIAE-PGVNPDRRVHMLVMLAFIEFNAGRADRAVQRAEEAVTQAMTLHRPDLITQA 521 Query: 527 ----------------------------------ALWSLIQQSEILFAQGFLQTAWETQE 552 A + ++ L A + Sbjct: 522 KPIRALLRFLLGEGFDEAELDGVFDFDEPEGLPLAAQPRTLHALLMLWTDRLDEAADQFN 581 Query: 553 KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQQQLQC 611 Q E+ E F+ Q+ A L AE A +E S+ Sbjct: 582 AIAQRCIERGDESE--RAFVDFHLGQVNVWRADLAAAERVAEDSVERALQSHGDLPLFVA 639 Query: 612 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 671 L + + S G D R + +G S GD AA + Sbjct: 640 LIVRVMVSAHFGREDQTRRFAAQA-RTVGERCESSRLGVWLTTSLGFLELSLGDHRAAVD 698 Query: 672 WLRHTAKPE--------FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 723 L + + A A I +G + AE ++E L N L Sbjct: 699 VLSPAVEGWSSAATGIPAPTELVTAPFLPDAAEALIGIGSLDEAERLVEALEANGTRLDR 758 Query: 724 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQ 783 L L G + A AL R E + +L Sbjct: 759 PWMLALGARCRALLLAARGDLTAAVSSGERALTEHGRLSMP----FELARTQLVVGRLQH 814 Query: 784 LNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQV 843 + L + +A ++ L + L + E + Sbjct: 815 RRRQYDAATAIVSTALAAFERIGAELWARQARAELDALTGR------QTAAGLAESERRF 868 Query: 844 LGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 L G +N +IA L V+ T++ ++ +Y++LG+ R + + Sbjct: 869 ADLAVQGMTNREIAATLYVSEKTVEANLSRVYRRLGIRSRGELARV 914 >UniRef50_Q47P06 Regulatory protein, LuxR n=1 Tax=Thermobifida fusca YX RepID=Q47P06_THEFY Length = 917 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 128/914 (14%), Positives = 261/914 (28%), Gaps = 88/914 (9%) Query: 30 NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQAT--- 86 ++ G GK+ L+ + ++ + + L + Sbjct: 32 GRGGALVVEGSPGIGKSALLDAVLDRLDSHRVLRVNGRRPESGLPLAGLHGLLLPVLHLR 91 Query: 87 --------NGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVI 138 S+ F+ PL V+DD + + Sbjct: 92 GTLSPEHERLLDDALRRGRYAEDDRLALSVAVLAFVTALSHERPLVCVVDDAQWVDPDSL 151 Query: 139 HESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCR 198 R ++ +R+ ++ L R +L + + L +E Sbjct: 152 SLLSFAAHRLNRIRAAILFATRDTAPRELSGL-PRMRLAPLTEETLHQVLEETA------ 204 Query: 199 LSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDE 258 ++ A S + G + A S + + + + A + Y E Sbjct: 205 --PDLDPAVRSELVRRAHGNPMVARHYAASLSPAQRAGTEPLSVMLPLPAEIMDAY--AE 260 Query: 259 VLDNVDLATRHFLLKSAILRSMNDALI-TRVTGEENGQMRLEEIERQGLFLQRMDDTGEW 317 LD + LL +A+ + ++ G+ + L+ ER GL D Sbjct: 261 TLDFLPADVSRLLLLAAVEPGVAVPVLTAEGDGDYDPVAALDRAERAGLLYVEADRVE-- 318 Query: 318 FCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAA-----GDALM 372 P+ G + C+ +AEL H A +G + H AA + Sbjct: 319 -FTDPMMGEVV---CRRATSAELTRAHLEMARLLDGRGPRYRVLWHRAAATRGPDEELGY 374 Query: 373 LRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLL 432 ++ E S+L E L +L ++ + +Y L+ Sbjct: 375 EITSAVSAGEPGLTAQEASILLERAAELTTKPSRRANRLAEA-SYQAWAAGQYSRSTILI 433 Query: 433 ARAEHEIKDIREDTMHAEFNALRAQ----------------------------------- 457 +A + R + N RA Sbjct: 434 KQAAPYVPIARIRGLPDMVNGYRAVGEEDSVQGCDQLMSAARELADHNPQQARALLLRAA 493 Query: 458 -VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 516 A G+ A+ AL L + G +L +G +L ++++ + Sbjct: 494 DAASLAGDISRFIAAARQAL-TLDVSDPQRDSGLAYLEGSMLAFQGNYAAALEPLRRSVE 552 Query: 517 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 576 + D + S+ G A +A + + + Sbjct: 553 LVEDDDEPLGLIRSI----VASLRLGDAIGARRQTARAIARAGVRGTVSMVPKALSYAVY 608 Query: 577 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 636 + L L A A G+ + + + ++ A + Sbjct: 609 GEFLH--GSLATATEHASLGLRLSTETGQRNCAAHHLAVLAMLAALRGDAEECATRVAAV 666 Query: 637 NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW--RNI 694 + + + G AA L A+ E H + Sbjct: 667 TEHTDSRPLGLARALTEWALAYLDLTRGRMHEAATRLEELARSEPCQGHPTIRLLSVPHY 726 Query: 695 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 754 A + +GE + AE L + A + + +DL L+ + A+ +A Sbjct: 727 VEAAVHIGETQRAEAALASFEQWANATQSPNDLA----LVARCRALLSDGETAREYFEEA 782 Query: 755 LKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFD 814 L L R G E L++ + LP + + + + Sbjct: 783 LNLHRRGGGGGI---EEARTRMAYGTLLRRSRLPSAARPHLRAAVEAFTRLETPLLLQQA 839 Query: 815 ENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNL 874 + + + T+ LT ++ Q+ L+ G +N +IA L ++ T++ H+RN+ Sbjct: 840 KEQLRATGEALD-DTPAPTAGLTPQQEQIARLVAEGATNREIAQRLYISPRTVEHHLRNI 898 Query: 875 YQKLGVAHRQDAVQ 888 +++L + R + + Sbjct: 899 FRQLQIRSRVELAR 912 >UniRef50_A4FKV5 Putative uncharacterized protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FKV5_SACEN Length = 1184 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 154/953 (16%), Positives = 285/953 (29%), Gaps = 80/953 (8%) Query: 11 VRLDHTVVRERLLAKLSG------ANNFRLALITSPAGYGKTTLI----SQWAAGKNDIG 60 V R+ A+L A R I G GK+ L+ + + Sbjct: 247 RGESRYVGRKAEAAQLGELVSEVLAGRGRSVWIEGEPGIGKSELLTFALADAGRRGCQLA 306 Query: 61 WYSLDEGDNQ-QERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W DE + + + + +A + A A +L EL Sbjct: 307 WAVADELSQRFPLQVMTECLGIDAKAPDPRRARLAATLHSESSAEPVDQLLELVDELCA- 365 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQL-GIANLRVRDQLLE 178 +PL LVIDD + R + L LV SR P+ + LR + + Sbjct: 366 TAPLMLVIDDLQWADEASVMVWHRLCAATRQLPLLLVAASRPAPERVELGQLRRAIEARD 425 Query: 179 -IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSA-RQNTHSA 236 + + T E ++ + + I SG ++ +A + R + Sbjct: 426 GVVLRLGPLTEPEIERLLGEVIGAKPGP-VLREIASRASGNPMYVRELADALVRDDAVRV 484 Query: 237 HKSARRLAGINASHLSDYLVDEV---LDNVDLATRHFLLKSAILR-SMNDALITRVTGEE 292 + + S D L+ V LD + +TR L A+L + + G Sbjct: 485 VDGVADVPAASVSEAPDSLIAAVARRLDFLSTSTREVLRWGALLGLEFSVTDLAAAAGRR 544 Query: 293 NGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWM 352 ++ E G + + F HPL L A +HR AAE+ Sbjct: 545 VSELMGTLEEAVGASVLVNAEDHLAFR-HPLLRQALYD---GIPKALRNALHRQAAETLA 600 Query: 353 AQGFPSEAI-HHALAA--GDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENP 409 G P + + H + A D + + L + +L N + L + E L+ + + P Sbjct: 601 NIGAPVKQVAEHLVVATAADDRWVVNWLAENNVALSNRAPLIAI-ELLERVLRTGQVGEP 659 Query: 410 QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAE 469 +L A L++ R G L +A+ + + AE L A + G A Sbjct: 660 NREVLLAALVKVLFRAG--RDPLMQAQQALALATDPYRSAEMRQLVAAMLHRRGETPAAI 717 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 529 A ++ + + + +L + ++ A + Sbjct: 718 DTLGNAADDPAVPEIWRARHRSLLANFRRGDLSDLDLTERNAREAYSQALTTGDPYLIAH 777 Query: 530 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 589 +L + + + A + A +++ E L+ R+ L RLDEA Sbjct: 778 ALQTRWLVDSVRRDHDGALVHIDNALEVVGE-DAALSEFRFDLLDNRSFTLQNLDRLDEA 836 Query: 590 EASARSGIEVLSSYQP-------------------------------------------- 605 E + R+ +V + + P Sbjct: 837 ETTMRAARKVAAQHLPSSGLQVTEAVHYYWVGRWDDANLELQTLTEDGPAISFYGLREPG 896 Query: 606 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 665 L + + RGD + L+ E + + + + + G+ Sbjct: 897 PAALLAHGVGALIAARRGDPNMVAYHLDAAEEYTPSTGAERESYDFLLVAQALAAEQRGE 956 Query: 666 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 725 + + L P FA ++ R I G+ + A L E A + + Sbjct: 957 QDKSLLILDPILNPSFAPLMLRHQWLPDLVRLAIEFGDLDRAHQALAVCQEEAAAETKRA 1016 Query: 726 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLN 785 G ++ + +A++ Sbjct: 1017 RAFCAAARC--QGLLTGDPEPVLDAAQHYREVCRPVELATALEDAALLLARRGMLSDGQR 1074 Query: 786 TLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLG 845 L E +H A+ R R + E + L+ E ++ Sbjct: 1075 ALDEAIKHYAELSAR---WDIRRAESRLREFGLRPGTTTTFTCPAAGWEALSPEEIRIAA 1131 Query: 846 LIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMG 898 L+ G SN +IA L + I+ + ++ KL R V ++ L + Sbjct: 1132 LVAEGRSNPEIAALLALPRRVIQGRVASILGKLNAHSRSAIVGEVRERLPTVS 1184 >UniRef50_UPI0001C30F9F transcriptional regulator, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30F9F Length = 932 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 126/939 (13%), Positives = 251/939 (26%), Gaps = 85/939 (9%) Query: 14 DHTVVRERLLAKLSGA------NNFRLALITSPAGYGKTTLISQW--AAGKNDIGWYSLD 65 + R+R A L A + L+ PAG GKT LI A ++D Sbjct: 4 TSLLDRDRETATLHRALEAAVAGRGGVVLLEGPAGIGKTALIDAVGPLAREHDALVLGAR 63 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFA--------------- 110 + + ++ ++Q + A ++F Sbjct: 64 ASELDRGFAFGVVLQLLEQTLDSLSADAREQLFAGAAGRAIAVFEHAASGDADPEYGVLS 123 Query: 111 --QLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIA 168 + PL L +DD H + + F R E LVV S + Sbjct: 124 GLAWLVANLAEERPLVLRVDDLHWADVASVR-FLEFLGRRVDELPVLVVGSMRPNEPDAP 182 Query: 169 NLRVRDQLLEIGSQQL---AFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLI 225 + + +Q L A L A + G + ++ Sbjct: 183 AAVLTELAAGPAAQTLLPGALGEHAIGAILGRELGGEPAPAFVTAARVATGGNPLLVTVL 242 Query: 226 ALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRS---MND 282 + + ++ + S +V+ L + +A+ ++D Sbjct: 243 GRESAASGLRGLEAEAQQLTEIGSRGVARIVERRLRTLGPDAVTVARATAVAGERAPVDD 302 Query: 283 ALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPE 342 + + ++ + + G HPL + + EL Sbjct: 303 VVALSGLAPDAAHRAVDALVAAAML-----APGGRAFVHPLVRSAV---VASTPRGELMR 354 Query: 343 IHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPW 402 +HR A +G + A D + + + + E +++ L Sbjct: 355 LHRDCATRLRERGARQTEVASHWLAAQPSGSADAVADLYAAARIAAAEGATETAVELLAR 414 Query: 403 D-----SLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEF------ 451 + P+++ L R L + A Sbjct: 415 ALEEPPPAADRPRVLAELGELELRAQRPHGAERLHEALAAGLDGEDAVRARAALAFVLVH 474 Query: 452 -----------------------NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI 488 L A VA D LE S + Sbjct: 475 NDPQAAFTLAEQARAQTADPALRLRLEAFVAEALIFVDAFAGQRDAWLEAAAAAVDPSPV 534 Query: 489 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 548 + V + ++L L ++ D + + L + Sbjct: 535 MLAHVAVQASMAGAPPRQTLELARRATAGGALVDDVGQGGSTWNLLTHALRFAEDAEACG 594 Query: 549 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 608 I + L+ + F+ + + + A +R G++ + + Sbjct: 595 RLLTDGENEIRRRGLQIASL--FVNQSWGYWHRDFGSVATGAARSRLGLDAVRALDLDVT 652 Query: 609 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 668 LA + +L D +++ G + ++ +A + + + D Sbjct: 653 TPALAAITAENLLLLDRAQEAAEIVDGPLGAAEGTFVEPFVRSARGLVRAHLRRGVDAEE 712 Query: 669 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 728 + F +A + GE + A + + AR+ L Sbjct: 713 DFRHVIAAGDARGWRAPFATRGRLRLAELLAMRGERDEALELADHDVAVARAAGTPGALG 772 Query: 729 RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLP 788 L + + DA L +A++ + +E L L++ + Sbjct: 773 AALRVRARAL-----GGDAIEQLQEAVETLAGS----PLRMERAWALHDLGALLRRSGKR 823 Query: 789 ELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIY 848 + + L + + +E P L LT E + L Sbjct: 824 SDARAALRPALDLATRAESTLLSRLVRAELEAAGGRPRRELLSGAEALTPSERRTAELAA 883 Query: 849 SGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAV 887 G SN +IA L V T++ H+ + Y KLG+ R Sbjct: 884 EGLSNREIAEALWVTRKTVEHHLGHAYGKLGINSRSGLA 922 >UniRef50_C5BYR9 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BYR9_BEUC1 Length = 840 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 158/858 (18%), Positives = 265/858 (30%), Gaps = 53/858 (6%) Query: 12 RLDHTVVRERLLAKLSGAN-NFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQ 70 R + R RL A L A + L+++PAGYGKTTL+ WA G+ + W +D + Sbjct: 2 RGGTAIDRPRLGAALDDAVTRAPVTLVSAPAGYGKTTLVRGWAVGRAGVAWLDVDASVAR 61 Query: 71 QERFASYLIAAVQQATNGHCA----ICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 + ++V A A + L L L + P+ LV Sbjct: 62 PLALFRAVASSVAGQVEPDAAGRLSQLARDAAREGSVPWADLLDGLVAALDDTCDPVVLV 121 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +DD H + + + +R + L LV+L+R+ P L + LR+ L EI + +LA Sbjct: 122 LDDAHRLGLDEPN-VLAHLVRIRHPALRLVLLARHDPPLALHRLRLDGALAEIRADELAL 180 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 T E + ++ + GW A++L AL+ + +A G Sbjct: 181 TTDEVAALLHAE-ALTPSEDDARALGRATQGWPAAVRLAALALSGRAGTREITAPAEEG- 238 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 L YL ++VLD + F+L + + L + G ++G L E + Sbjct: 239 --ETLVGYLSEQVLDLLPDDVAAFVLDATTSDRVTGPLAASLVG-DDGARLLGECVHLAV 295 Query: 307 FLQRMD--DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHA 364 FL + + +F +R + A ++H AA + A P A+ HA Sbjct: 296 FLDTDGSVGDDPAYRWQSVFARHVRALRRRTDPARSRDLHTRAAR-YWAPHDPRSAVEHA 354 Query: 365 LAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 +A D + I+++ +W L EL L + L S L+L++A + Sbjct: 355 VAGSDVDLAARIVIDRSWELMAAGELDTLSD-LAGASAASDRHRTDLLLIRAAGAYAGAD 413 Query: 425 YGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF 484 + LLA +T AL VA+ D+A R A L Sbjct: 414 LATGDALLAWV-------PRETAAVVPRALVELVAVPARPDDDAVRRASELLAGPVHLDP 466 Query: 485 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 544 +R LG + L+++ E+ A + L + ++S A Sbjct: 467 ATRAALLLHLGRARGGTDPDGAAAELLREAERAAATAGLPVIELAAAAERSLA-MAASAP 525 Query: 545 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 604 A A + R + L A + + Sbjct: 526 GHADLAAVAAVERATRSAHGSASFLAPAHLARGLHAFWRDDLGLARELLTLARDASAR-- 583 Query: 605 PQQQLQCLAMLIQCSLARGDLDNA----------RSQLNRLENLLGNGKYHSDW------ 648 A+L + +GD L L G + Sbjct: 584 DATHAVAAAVLQMTADLQGDGAALSSGVGSGWPTLDTLVHAHRLATKGDLGAAVHTVREM 643 Query: 649 -----ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE 703 + + Y + G AA+ LR PE H + G Sbjct: 644 PDGPRLPIVSVWEAEYLRRGGLADAASRALRSAQTPEGG--HLAVAAGLTWVLLALDAGR 701 Query: 704 FEPAEIVLEELNENARSLRLMSDLNR-----NLLLLNQLYWQAGRKSDAQRVLLDALKLA 758 A LE A S+ + L L ++ VL A Sbjct: 702 PSDAHRGLELAITRAASIGSIRPFLERAHDLAAPLAAHLTRGTAHEAFVVEVLARAEATG 761 Query: 759 NRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFV 818 + E E + + + ++ + K Sbjct: 762 APRPATPWDLTERERLVLSFLRSSMTAAEIAVSLSITLNTVKTHQRAIYRKLGATGRREA 821 Query: 819 ERLLNHPEVPELIRTSPL 836 RL + L Sbjct: 822 LRLAESRGLLTPATGIAL 839 >UniRef50_UPI0001C311C9 transcriptional regulator, LuxR family n=2 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311C9 Length = 948 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 153/944 (16%), Positives = 254/944 (26%), Gaps = 77/944 (8%) Query: 14 DHTVVRERLLAKLSG------ANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEG 67 RER LA+L A RLA++ + AG GKT L+ G L Sbjct: 2 SALFERERELAELDAMVVEVCAGGGRLAVVEAAAGLGKTRLLLAARDRGRAAGMRVLAAR 61 Query: 68 DNQQERFASYLIA----------------------AVQQATNGHCAICETMAQKRQYASL 105 + ER + +A A A + A A Sbjct: 62 ATELERDFPFALARQLFEPALAALAAPARAVLFEGAAGSARSAVEATDPDAPPAEPAADT 121 Query: 106 TSLFAQL--FIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLP 163 ++ L PL L +DD H + R + + LVV R Sbjct: 122 FAVLHGLYWLTAAFAAQQPLLLAVDDAHWSDAASLDFLGFLLPRLEELPVLLVVACRRDE 181 Query: 164 QLGIANL-RVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATAL 222 +L R+ L + + L E A ++ + G L Sbjct: 182 PGAERSLARIATDSLARRLTPHPLSPRATTALLADELEHEPEEAFAAACHEVSGGNPFLL 241 Query: 223 QLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMND 282 +A + + A V L + + +L D Sbjct: 242 GELARTLAAERIDPAVAQASHVRELAPERVTRTVLVRLARLSREAQAVARAVVVLGDGAD 301 Query: 283 ALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPE 342 L+T + + + +D HPL L A E Sbjct: 302 GLLTAELAGLD-EAVAARAADELRAAAILDRDATLRFVHPLVRTALDVEL---PAGERAA 357 Query: 343 IHRAAAESWMAQGFPSEAIHHALAAGDALML---RDILLNHAWSLFNHSELSLLEESLKA 399 H A E A+G + + L A DA + LL + + L Sbjct: 358 AHVRAVELLRARGASPQQLAAHLVATDARGARETVETLLEAGRAALSSGAPRSAIAYLTR 417 Query: 400 LPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVA 459 + E+ ++V+L + ++ E + R ++ + Sbjct: 418 ALHEPAPEDLRVVILNSLMIAGIRAPDRTLFAALLPEVLAEMERNPSLRLRWGVKVTVWM 477 Query: 460 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 519 I +G D A L + A+E ++ + L Q A Sbjct: 478 ILNGRVDGAAPLLERAIEVANAEGDVEHAFRLEAQLSLVTPRTLLA---TRAQLARYSAG 534 Query: 520 QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 579 +SE G A E +A +EQ + A L Sbjct: 535 IPPDSPCGRLLAAYESEWHAFDGTALDATEAARRALAHDGRIFVEQPEFFAPGRPVLALL 594 Query: 580 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI-QCSLARGDLDNARSQLNRLENL 638 L RL A+ + + + + +L + + ARGDL A + + + + Sbjct: 595 LADEVRL--ADRAVKRALAMARQRGATPELVASWWMSSGVAWARGDLPAADADMRQALEV 652 Query: 639 LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 698 GK + + + AA A N + + Sbjct: 653 ARLGKLRYALLPLRATLTSLLVARGELAAAEAEVEASGMSGGMPNAFVFVLWLFARGQLR 712 Query: 699 ILLGEFEPAEIVLEELNENARSLRLMSDLNR-NLLLLNQLYWQAGRKSDAQRVLLDALKL 757 G FE A E L A ++ + + ++ + A+ + AL Sbjct: 713 FAQGRFEEAAADFETLERFAVGWGVIGAPAPPVYICVARVATALDDRERARTLADAALTR 772 Query: 758 ANRTGFISHFV----------------IEGEAMAQQLRQLIQLNTLPELEQHR------- 794 A R G E L + E Sbjct: 773 ARRWGAPVLVASALRVQAATLDGSARITALEEAVAMLDRSPARLARAEALTELGAALRRA 832 Query: 795 ---------AQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLG 845 + L + A + + I LT E +V Sbjct: 833 RRRVDARPPLREALELARRCGAASLARRAHDELAATGERVRRYTPIGVESLTPSERRVAE 892 Query: 846 LIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 L SG +N QIA + TI+TH+ ++Y KLG+ R+ Sbjct: 893 LAASGMTNLQIAQTRFLTVKTIETHLSSVYDKLGIRSRRQLPAA 936 >UniRef50_Q1MX84 Putative transcriptional regulator, LuxR family n=1 Tax=Streptomyces sp. NRRL 11266 RepID=Q1MX84_9ACTO Length = 910 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 142/940 (15%), Positives = 259/940 (27%), Gaps = 94/940 (10%) Query: 15 HTVVRERLLAKLSGANNF------RLALITSPAGYGKTTLISQWAAGKNDIGWYSLDE-- 66 V+R L A + R LI G GK+ L+ D+G L Sbjct: 2 AFVIRAAEFEALRSAFSRCLHGMSRTILIEGGVGCGKSALLHAITEHAADMGATVLSVQG 61 Query: 67 ---GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPL 123 + L+A V G T A + A + + Sbjct: 62 RSTAAHPPISLFQQLVAQVPAPPPGEGPAGATAALQFSAALPH----------VAENGAV 111 Query: 124 YLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLS----RNLPQLGIANLRVRDQLLEI 179 + +DD I + ++ H+ +++ R+ Q L R I Sbjct: 112 VISVDDVQDIPWSELDFLLQTVSWHRSRRTLILLSHCPHLRHRDQPVKTELLRRPNAQRI 171 Query: 180 GSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKS 239 L + + R++ P + G L+ + R + Sbjct: 172 HLGPL--DERGVRAAVTTRVNRPH-EQWIELLHHLSGGSPLLLRALLEDLRDEDMEVRPT 228 Query: 240 ARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAIL-RSMNDALITRVTGEENG--QM 296 +V L + ++L S L++ +T Sbjct: 229 GAETTSGPLGMYGRAVVS-CLYRSGASAVELGRLISVLGDSATPELLSGMTRISPAVMDQ 287 Query: 297 RLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF 356 +LE + G+ G F + G+ R+ + E+HR AA G Sbjct: 288 QLEALRDSGVL------DGTNFRH----GSAPREILADLGTLQRNELHRRAAVVQNNAGS 337 Query: 357 PS-EAIHHALAAGDALML--RDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVL 413 P+ E H LAA A R L + A + ++ L L+ L ++ P + Sbjct: 338 PTTEVARHLLAARHAAEAWQRSALRDAAETAIGQEKIRLAVRYLE-LALENSPNTPDRIE 396 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 + L R T + + D M + A + + G EA + + Sbjct: 397 IYLRLALITQRISPAATEIRHLTALLSAFHSDKMPSTAYDGLADLLFSYGKIQEAFAVLR 456 Query: 474 LALEELPPGWFYS--RIVATSVLGEVLHCKGE---------------------------- 503 E + + H + Sbjct: 457 RQGAESSAADVRAGDHPSIAWLWAWYSHHTDQPQNDGQAPRLPPPDGGGAGPYGATALFQ 516 Query: 504 -------LTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ 556 E + + +WS+ + L L+TAW+ E + Sbjct: 517 TFEGSFLFGERGDWAAAAENLLEVSTLSDSTVWSMACAIKALVIADRLETAWQWCEWLVK 576 Query: 557 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 616 + +A + +L R V++ +L Sbjct: 577 --ESATRDAPGWQAVFSLQQATVALRQGKLAAGLDCIRLVETVITERSSGYACAVETVLA 634 Query: 617 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 676 + G D + + S + + R + T +A Sbjct: 635 ATHMEMGRYDEVARVFAK---PIPPAWEKSIYWLSYLCARGSFHLATNRPHSALADFLRI 691 Query: 677 AKPEFA---NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 733 K ++ L +A A + LG+ + A +L+E + L L Sbjct: 692 GKVAERTLVDHPTLVPWRLYVAEAWLHLGDEKMAARMLDEHTAR-DPGHGGRNHAMVLRL 750 Query: 734 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 793 +L R R + + L +R G A+ Sbjct: 751 RARLAPPHRRVGLLFRAMDELLASGDRLEQARTLHELGAALRGLGHDSWAARARAAAAHI 810 Query: 794 RAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSN 853 + + R ++ P + LT+ E +V L+ G +N Sbjct: 811 ARNCLPDQAVA--RSPAPERVGRPGPAAVSAVGTPCPVGQKLLTRAEHRVAALVAKGLTN 868 Query: 854 EQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 Q+AG L + +T++ H+ +YQKLG+ R D Q + L Sbjct: 869 RQVAGRLHITVSTVEQHLTRIYQKLGIGQRADIGQRLKSL 908 >UniRef50_A3PV03 ATP-dependent transcriptional regulator-like protein n=1 Tax=Mycobacterium sp. JLS RepID=A3PV03_MYCSJ Length = 881 Score = 180 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 117/627 (18%), Positives = 203/627 (32%), Gaps = 37/627 (5%) Query: 1 MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWAA-GKNDI 59 ++ KL P +VR RL L + + + +PAG GKTTL+S+ AA + Sbjct: 10 VVFREKLRAPEPTG--LVRARLEQALLDGPSAVVDSVVAPAGSGKTTLLSRVAATSSAPV 67 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 GWY + + D + RF ++L AA+ L L W Sbjct: 68 GWYRVTDDDGPEARFVAHLAAALGPVC---------------GTGDVRSMDALLTALDNW 112 Query: 120 HSP-LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 P +++DD H I + ++ F+ +P L +++ SR P + I L+V E Sbjct: 113 SGPRAVVILDDLHEIADTPAEHALERFVSLRPRRLRVILGSRRTPDINIPRLQVSGTFHE 172 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 IGS QL F E ++ F P+ ++ + GWA LQL L+ + + Sbjct: 173 IGSDQLRFRSWEVEELFANVYRQPLRPEAAAALTRRTGGWAAGLQLFHLATAGRSAAERH 232 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 A G + + YL VL + R FLL++ L ++ + + L Sbjct: 233 QAVSDLGGRSKLVRSYLARNVLGALPDERRVFLLRTCTLGRLSGPACDALLNTDGSHRVL 292 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAE-LPEIHRAAAESWMAQGFP 357 E ++R+ LF DD G F YH + N L E ++ + + + G Sbjct: 293 EMLDREQLFTS-TDDDGLHFRYHEVLQNHLELALVEEYGSDGARAWYARSGVVLESLGDL 351 Query: 358 SEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAW 417 A A D + ++ LP + +P L L A Sbjct: 352 RSATKAFAKAEDWPAVSRLIRRAGADGIGE----------DLLPPVTFQRDPWLALANAR 401 Query: 418 LMQSQHRYGEVNTLLARAEHEIKDIR-EDTMHAEFNALRAQVAINDG---NPDEAERLAK 473 + + + +E A+ + G R+ + Sbjct: 402 RLARDGALQAARDAYLFTQSCYDEPGFSGICMSEAQAVAGWLPATGGGSPAFRHWSRVLR 461 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 533 L ELP + + + + L ++ R+ + + Sbjct: 462 DGLRELPDLRAPAATTGAAGVRLAHGLLAVVAGENDLAREVIASVRRDESASATVAIAAD 521 Query: 534 QSEILFAQGFLQTAWETQEKA-FQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEA 591 + + + A L + LP L QL+ A Sbjct: 522 LAWEMLDVLCVDAAGPCHSTGPGDLAALAEVNGLPWLARLAHGLQQLVLARSGDAPWRLE 581 Query: 592 SARSGIEVLSSYQPQQQLQCLAMLIQC 618 I + L + + Sbjct: 582 CCAEVIAACDARGDVWGAALLTLAVGL 608 >UniRef50_D2SDB3 Transcriptional regulator, LuxR family n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SDB3_9ACTO Length = 904 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 131/913 (14%), Positives = 251/913 (27%), Gaps = 80/913 (8%) Query: 28 GANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATN 87 +I AG GK+TL++ + + + +++ + L + Sbjct: 20 RTGTGGALVIRGVAGSGKSTLLADAVSAASGMRVLRTSGVESESPLAFAALQRLLWPLRA 79 Query: 88 GHCAICETMAQK----------RQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPV 137 A+ A L L + A +P+ VIDD H + + Sbjct: 80 RLDALPAPQAAALGAALGEAAGDGDRFLAFLGTLSLLADAAEEAPVLAVIDDAHWLDDAS 139 Query: 138 IHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDC 197 + R Q E + L+ +R+ + +L T +A Sbjct: 140 AAALLFVARRLQAERVALLFAARDGEAHDFDVPDLPTAVLG------GVTGPDADTILSA 193 Query: 198 RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVD 257 R ++ A R+ G AL +A + + + S + +L Sbjct: 194 RADDAVDPAVRDRLVAATGGNPLALGELADALTGDQLAGRASLPTPLPLTGGVERGFLDR 253 Query: 258 EVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQM-RLEEIERQGLFLQRMDDTGE 316 + + FLL +A + ++ + L+E ER GL D Sbjct: 254 --YRRLSTNAQRFLLLAAADDTGRLTVVRDAAARLDVDDDALDEAERVGLLRVDGDSLAL 311 Query: 317 WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDI 376 YHPL + + + + + +HRA A+ A A A + Sbjct: 312 ---YHPLVRSAVY---RAATSTQRRAVHRALADVLAADPDRHAWHLAAAADRPDESVVAA 365 Query: 377 LLNHAWSLFNHSELSLLEESLKALPWDSLL------------------------------ 406 L A + ++ Sbjct: 366 LDGVADRAAARGGHEAASAAWARAAELTVDSKARGRRLFSAASSAWLGAHPSRAAGLAAA 425 Query: 407 ---------ENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQ 457 + +L+LLQ + + H E L+ +A ++ ++ L A Sbjct: 426 AGAEVTDPVQRARLLLLQGQIEWNTHSLNEGYDLVLQAAQLAAEV-DEATARPLAMLAAA 484 Query: 458 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM 517 ++ A L E +R + G + + + A ++ + Sbjct: 485 LSAFGARSPRPVDPAALVTEPAADAPPTARAAWALLQGFAAVGRRDWATAAASFRRAFDL 544 Query: 518 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 577 + + + + + E+ + H + Sbjct: 545 TDPDPLEGDHVLQP-NLGIAAWLIDEDERSLRLHEEQLTAARRAGALNMVEHALTRGFHS 603 Query: 578 QLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN 637 QL A+ + S+ A L + RGD R + Sbjct: 604 QLATGAWTTAAGAAAEALPLT-ASTGSTGLTALPTAQLAVVAALRGDEATDRHLADVAAI 662 Query: 638 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 697 + +D + + G A A + L P L Sbjct: 663 RAAHPVGITDSLVADLAHWARALRTAGQPAPALHHLEQLQNPVRRRMAALDVFD-----I 717 Query: 698 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 757 + G + A L E+ + A + + L + + L Sbjct: 718 AVRAGREDVARTWLTEVEQFAAATGTAGAVAVTEHGRAVLADRPDAEKHFLAALDAHAAS 777 Query: 758 ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENF 817 + GE + + + + L + A Sbjct: 778 PRLPDRARTHLAYGEHLRRA--------RRRVDAREHLRAALTLFEELGAAPHAERAAQE 829 Query: 818 VERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQK 877 + ++ T+ LT +E QV GL+ G SN +A L V+ T+ H+RN++ K Sbjct: 830 LRASGETARRRDVTTTTELTAQERQVAGLVRQGLSNRDVAARLFVSPRTVDFHLRNVFSK 889 Query: 878 LGVAHRQDAVQHA 890 LGVA R + A Sbjct: 890 LGVASRAELTALA 902 >UniRef50_A1SPZ4 Regulatory protein, LuxR n=1 Tax=Nocardioides sp. JS614 RepID=A1SPZ4_NOCSJ Length = 1006 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 149/973 (15%), Positives = 266/973 (27%), Gaps = 117/973 (12%) Query: 22 LLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGW-------------------- 61 LL L L++ AG GKT L+++ GW Sbjct: 52 LLGVRPAGTGTGLVLLSGDAGVGKTRLLTELRDLAFTEGWQVVAGHCLDFGDSALPYLPF 111 Query: 62 ----YSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSL----FAQLF 113 L + +A+ + G + +L Sbjct: 112 SEVLGRLAADLPDLVEEVAGRHSALARLQPGRRVMGSPARSSDDLGALDRSDLFEAVHAL 171 Query: 114 IELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVR 173 +E A +PL LVI+D H F R +++V R+ LR + Sbjct: 172 LESAATSAPLLLVIEDTHWADQSTRDMLSFLFSRPFAGPVSVVASYRSDDLHRRHPLRRQ 231 Query: 174 -----DQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALS 228 + + + E + I D G A ++ + + Sbjct: 232 VAEWSRIRGVHRVPLSPLSDDAVRALIAELAPEGLAERELADIVDRAEGNAFFVEELTSA 291 Query: 229 ARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRS-MNDALITR 287 A + + LD +D R + +++ ++ + Sbjct: 292 AAGPGRWVPADLADVLLVR------------LDRLDDTARQVVRTASVSGRRVSHETLAA 339 Query: 288 VTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRA- 346 +G + ++ + + + D F H L G + L E +H Sbjct: 340 ASGLADAELDEGLRKAVEMNILVAGDGRYSFR-HALLGEAVYDDL---LPGERVRLHAQY 395 Query: 347 -AAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSL 405 AA A+G +E HA A D + + + Sbjct: 396 VAALRAGARGTAAELARHARLAMDLDTALTASIQAGDEASRVGGPDEAAYHYQQALELLV 455 Query: 406 LENP---------QLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRA 456 +LV+ A + + ++A + T A + +A Sbjct: 456 DPRRCAQVDLDLSKLVVSAAEALSASGDPERAVKVIADQVERLPVDAPTTWRARMMSTQA 515 Query: 457 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 516 + + D+ ++ A+ +P G R + VL G+ + + Sbjct: 516 LLTMMIEGSDDPVGMSTEAVALVPDGDSGLRTRVLANHARVLAGMGQYDEAQTVGLDALH 575 Query: 517 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 576 +A + D+ A + S L G + + A M + Sbjct: 576 LAERLDLHELASEVITTLSG-LKKAGPKEGLRQALADAVARAEASGALSSEMRARY--LL 632 Query: 577 AQLLWAWARLDEAEASARSGIEVLSSYQ---PQQQLQCLAMLIQCSLARGDLDNARSQLN 633 + WA DE E RS IE + + L + RG D+A + + Sbjct: 633 GRSYQDWAEFDETERWFRSAIERGADAGIPYAPYAFEARWQLAWVLVVRGRWDDALALTD 692 Query: 634 --------------------------------RLENLLGNGKYHSDWISNANKVRVIYWQ 661 L NA+ V + Sbjct: 693 TGQDTPPPAIPRALIAPLRMQVLQARGEDVRAEARALRKFWAREGGVAINASAVELDAAG 752 Query: 662 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI-LLGEFEPAEIVLEELNENARS 720 + D A A H + I + + PA E + R Sbjct: 753 LRRDAAGAIEVYDAVVAVLTRIWHEWFSARIRLGALTIGAVAQAMPALSAAERASYVGRV 812 Query: 721 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-----------------GF 763 R+ +D + L + G + A LDA L R Sbjct: 813 DRIHADGHVVLQRYSDPSGHWGPEGRAWMKRLDAETLRVRWLAGIDAPPLDALVDTWRDA 872 Query: 764 ISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN 823 F G A + L R L ++ + H+ R + Sbjct: 873 AVLFEDFGHAYELARVRTALAGILRATGDLAGGRELGDLARASAHQLGARPLLDELRSIG 932 Query: 824 HPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHR 883 LT RE +VL L+ G SN +IA +L ++A T+ H+ N+ KL + R Sbjct: 933 SAPARTESVPDALTPRESEVLQLVAQGRSNGEIAKQLFISAKTVSVHVSNILGKLDASGR 992 Query: 884 QDAVQHAQQLLKM 896 +A A++ + Sbjct: 993 TEAAAIARRRGLI 1005 >UniRef50_A8M268 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=3 Tax=Actinomycetales RepID=A8M268_SALAI Length = 981 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 132/927 (14%), Positives = 266/927 (28%), Gaps = 92/927 (9%) Query: 35 ALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICE 94 ++ + G GKT L+++ A +D+G+ + + + + Sbjct: 64 LMVKAAPGGGKTRLLAEAATVADDMGFTIVGGVVAGPDAVPDMAHLPAATQVRVAGSSTD 123 Query: 95 TMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLT 154 + R + + + A+L A P + +DD HL P + + + + Sbjct: 124 RFSSPRATSLVEATGARL--RRAANDVPTVVTLDDLHLADFPTLMALCDLILALKGRPIL 181 Query: 155 LVVL---SRNLPQLGIANLRVRDQLLEIGSQQLA----FTHQEAKQFFDCRLSSPIEAAE 207 ++ + + A++ + + + + +++ +Q S + Sbjct: 182 WLLTFTSATSAAPSEQASMCLSRLRGRVAVEPIRRLSPLSNEALEQLVTDHTGSVPDPTL 241 Query: 208 SSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDY------------- 254 + + + ++LI + RL D Sbjct: 242 LALVESLNDTPSAVIELIRGLMEDGVICTVEGTLRLTPGTPGSSRDVNAVHVPAPVPKRL 301 Query: 255 --LVDEVLDNVDLATRHFLLKSAILRS-MNDALITRVTGEENGQMRLEEIERQGLFLQRM 311 +++E L + +T L +A+L S ++ + E + E + Sbjct: 302 SSMIEENLLRLSDSTVKSLRLAAVLGSPFAPEELSAMLDESPAGLLTAVHEAVERGVLVC 361 Query: 312 DDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIH-HALAAGDA 370 F ++ L + R AAE+ + + +E + Sbjct: 362 CGQNLAFRTESIWRVLL----DSVPPPVRALLRRQAAETLLRRPDGAERAALQLVHVARP 417 Query: 371 LML--RDILLNHAWSLFNHSELSLLEESLK--ALPWDSLLENPQLVLLQAWLMQSQHRYG 426 D++ A L + +++ L + +L + R Sbjct: 418 GDAKDLDVIAEGARRLVATDPTTAASLAIRGMELLDPGQDQRVRLANTAVKALTKVGRLD 477 Query: 427 EVNTLLA---RAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPG- 482 E TL + A A + + G+ A + L G Sbjct: 478 EAVTLARDEIEVAAAPTSVPPARDIAALQASMSTALLLRGDASAARQATDDVLARQAGGL 537 Query: 483 -----------------------------------WFYSRIVATSVLGEVLHCKGELTRS 507 R+ A +V G + + Sbjct: 538 PRAEVVITRLAASYLIGDSTAVEQARTILSRPDRRDRAVRVSAMTVHALDRWRTGHVVDA 597 Query: 508 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 567 + +++ + L + L A E + E P Sbjct: 598 VGILRDAVAL-NHVGETVQVLDPCCFLAFALVRIDEFGEAEEVVRGYGRTTAST--ESSP 654 Query: 568 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN 627 +RA L A +L+EAE AR + Y P Q +L +L RG Sbjct: 655 ATAVQAVLRAPLHLAQGQLNEAEQVARVALRQDGPYMPVFAPQAFLVLAHVALRRGTPAQ 714 Query: 628 ARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 687 A L LE G S W + ++ ++ AAA L T + Sbjct: 715 AAIHLKALEGE-GLQHSSSPWQAEYLLLQAQLAEVNDGPAAALEVLTETGAQPITPREIV 773 Query: 688 ---QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 744 R + + E A V++ + + ++ + L L Sbjct: 774 LEDPAVAAWWVRCALTADQPEIAGGVVDTIEDLSKLNPEVPALFAAATHARALAEADTDA 833 Query: 745 SDAQRVLLD--ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREI 802 L + A F+ G+ + +N +L R +R Sbjct: 834 LAEAGRLHRNPWARAATAEDRARIFLFRGDHESAITELDCAMNAYNQLGAEREAARVR-- 891 Query: 803 NQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEV 862 A V R L LT+ E +V L+ +G +N+Q A L + Sbjct: 892 --------AQLRGLGVWRRHWKQAKRPLSGWESLTETERKVAKLVANGLTNQQAADHLFI 943 Query: 863 AATTIKTHIRNLYQKLGVAHRQDAVQH 889 + T+ H+R +Y+KLG+ R +++ Sbjct: 944 SPHTVGFHLRQIYRKLGIRSRSALIRY 970 >UniRef50_A4TDC4 Regulatory protein, LuxR n=1 Tax=Mycobacterium gilvum PYR-GCK RepID=A4TDC4_MYCGI Length = 977 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 124/914 (13%), Positives = 251/914 (27%), Gaps = 71/914 (7%) Query: 20 ERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLI 79 R + A + ++++ +G G++ L + +D+ E + Sbjct: 90 TRWMDVCEEARRAGVRVLSTRSGVGESAL-----------DFVGVDDLLADVEPEVFDAL 138 Query: 80 AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 Q+ + + + +P+ + +DD + Sbjct: 139 PIAQRTALRQVLVRSGADGTEIDRRAAIGAFRALVAELATRTPVLIGVDDVQWLDE-ATR 197 Query: 140 ESMRFFIRHQPENLTLVVLSRNLPQLGIAN--LRVRDQLLEIGSQQLAFTHQEAKQFFDC 197 +++ + +R + +VV R + G A L + + + E + Sbjct: 198 DALVYTMRRVRGPVAVVVTERAVTGRGSAVSWLDLGEAGSVTRLVVRPMSVAELHRLVAG 257 Query: 198 RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVD 257 R + +R+ + G +A + + Sbjct: 258 RTGRSLSRPAMARLAEMSGGNPYYALELAQAMDSAGWVWSAGLPSSLVDATGLHRE---- 313 Query: 258 EVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEW 317 +D LL +A + L+ V + + +E+ + G Sbjct: 314 ----RLDADVNEVLLAAASVVGPTVDLLAAVLHRP-VEQIVGSLEKAENLGIASIEAGRV 368 Query: 318 FCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDIL 377 HPL + + + + E IHRA A + + + A GD +LR + Sbjct: 369 GFSHPLLPHIIYSQAR---PGERRRIHRAVASVEPSPQRQARHLALAATTGDPEILRAL- 424 Query: 378 LNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEH 437 + A L + P L A LL E Sbjct: 425 -DSAAETARADAAPATAAELTEFAIGLGGDTPVRRLHAARDHLLAGDIDRSLALL---EP 480 Query: 438 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 497 + + + M A L G A ++AL + G + L Sbjct: 481 TAQGLPDGLMRAHARVLVGGALAVRGTFGRAVDELRVALAD-AAGDPGLTVQIQLALAMT 539 Query: 498 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF------LQTAWETQ 551 L G+ + ++Q A +L Q + A G L+ A + + Sbjct: 540 LSAAGDHDGADDHVRQARMHAEGMADHVLTSQALAAQVLVRTANGEVADEVSLRRAADLE 599 Query: 552 EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG-IEVLSSYQPQQQLQ 610 ++ ++A + RL+E A + L Sbjct: 600 QRVHHTSELPAGVHTAAPFSARVVKALVSVWTGRLNEGRAQLAEAQARYAARGSDVDVLW 659 Query: 611 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 670 + G +A + L + + A + R + + G ++ A Sbjct: 660 IQFHSAMTDIWLGRHGDAARLAEDML-LGAEQLGGTAARALAAEPRALLATLEGRESDAR 718 Query: 671 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR----LMSD 726 + + + G + ++ LG A VL L +R+ Sbjct: 719 AEVDQVLEQVSDDVPPSNGLRTVLGFLELSLGRHAAAVDVLSPLLARSRTGGSIEIATLR 778 Query: 727 LNRNLLLLNQLYWQAGRKSDAQRVLLDA---------LKLANRTGFISHFVIEGEAMAQQ 777 +LL + + L DA + +A R + A AQ Sbjct: 779 FLPDLLEAAFSVGRVDEFAAWVDALEDAGTRLNRPWIVAVAARCRTMQLAARGELAAAQV 838 Query: 778 LRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDEN------------------FVE 819 R + Q R Sbjct: 839 TALRALDAHRGLPMPFELARTQLIVGQLQRRLRQKRLARTTLTEALTIFEQLGTPLWAAR 898 Query: 820 RLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 E + LT E +V L+ SG +N+ +A L ++ T++ ++ +Y+KLG Sbjct: 899 ARTELARTAESPQQHLLTATEQRVAELVASGLTNKDVAAALYISPKTVEHNLGRVYRKLG 958 Query: 880 VAHRQDAVQHAQQL 893 + +R + + L Sbjct: 959 IRNRTELGRQMDSL 972 >UniRef50_A1YAL2 Transcriptional regulator n=1 Tax=Amycolatopsis orientalis RepID=A1YAL2_AMYOR Length = 936 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 158/950 (16%), Positives = 288/950 (30%), Gaps = 108/950 (11%) Query: 11 VRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLISQWA-----AGKNDIGWYSLD 65 R + V+R+ L S N A++T A GK+ L+ +A A + ++ Sbjct: 19 PRAELLVLRDFLTE--SEQGNAVAAVVTGTAASGKSELLHAFAQQCAEAEATVMSALCVE 76 Query: 66 EGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA------EW 119 + L + + + + + + L ++L Sbjct: 77 AEKDLPFTALFQLFRGPALSGDLRAKAADLLTRAERTGLTGRPSTHLMLDLLELVRELAA 136 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLS-----RNLPQLGIANLRVRD 174 H P+ +++DD+H + P +H M R + N+ +V+ + LP LG LR+ Sbjct: 137 HRPVVVLVDDFHHVDTPSLHWLMFLMRRMRTMNVLVVLTESLSAKQTLPLLGAEYLRLPH 196 Query: 175 QLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTH 234 I + L E +F + + + G Q + R + Sbjct: 197 -CRRIRLKPLG--RDEVARFV----PPGQDDTLVKGLHELSGGNPLLAQALLEDLRASGV 249 Query: 235 SAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSM-NDALITRVTGEEN 293 R + G + V L D TR A+L L RVTG + Sbjct: 250 PLAPETRPIPGDHYCQA----VAACLQRGDQDTRTLAGVLAVLGKGETVCLAVRVTGMDQ 305 Query: 294 --GQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESW 351 + + + GL F HP+ + AE +H AA Sbjct: 306 RTAGRAIALLHQVGLL------DAGRFR-HPM---TVTAVLADVPVAERARLHERAAVLL 355 Query: 352 MAQGF-PSEAIHHALAA--GDALMLRDILLNHAWSLFNHSELSLLEESLK---------- 398 G + H +AA D +L A + S + LK Sbjct: 356 HHDGAGALDVARHLVAADRADRPWAVPVLRTAAELAKVDNRTSFAVQCLKLACRSCGDEA 415 Query: 399 -------ALPWDSLLENP---------------------QLVLLQAWLMQSQHRYGEVNT 430 L NP + + + R E Sbjct: 416 LEVEMVTQLAGLEWRNNPAIGAVHTDHLYEIFLAGQLPVRAAAILVRFLLWHGRTAEAGE 475 Query: 431 LLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA 490 +L + + T + D+ A A + +P F + A Sbjct: 476 VLDKLAVMEPSADDRTEAELRITRLFILCSYPVLRDKLPAPA--AKDRVPAQSFDPNVQA 533 Query: 491 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 550 L + G ++A + + + D ++ S + L L A Sbjct: 534 AMALSRI-VTNGPDDDAIASAENVLKSIQLGDTMVESVRSAL---FALIYADRLDKAVPW 589 Query: 551 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE-VLSSYQPQQQL 609 E Q + RA++ L AE A++ + + Sbjct: 590 CELLQQEAADCDAP--SWQAVFAAARAEMALRQGDLVTAEKQAKAALTFITPQSWGVAVG 647 Query: 610 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 669 LA L ++ G + A S +N+ + + + + + R + T AA Sbjct: 648 VPLATLCLAAVGMGKFEEAASHINQ---PVPASMLQTRFGLHYLRARGRLYLETDRVHAA 704 Query: 670 AN---WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 726 +K + L + A A + LG E A+ +L+E Sbjct: 705 LGDFVLCGELSKSWDFDLPVLVPWRGDTAEAYLRLGMPEKAKSLLDEQLAKLAGSTSH-V 763 Query: 727 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQ---LRQLIQ 783 +L L ++ R +L +A+K+ G +++ L + + Sbjct: 764 RGISLRLKAKIAEPQKRPE----LLREAVKIFQAGGIRLELARALGDLSRAHYTLAESGR 819 Query: 784 LNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVP--ELIRTSPLTQREW 841 T+ H A+ ++ DE E L++ E Sbjct: 820 ARTVARQAWHIAKGCHADVICRDLRLDGTGDEGKPASTAAEIAASGVERELIESLSEAER 879 Query: 842 QVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 +V GL G++N IA +L + +T++ H+ +Y+KL V R+D Q Sbjct: 880 RVAGLASLGHTNRAIASKLYITVSTVEQHLTRVYRKLDVNRRRDLPSWLQ 929 >UniRef50_D2SB90 Transcriptional regulator, LuxR family n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SB90_9ACTO Length = 910 Score = 178 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 139/907 (15%), Positives = 263/907 (28%), Gaps = 63/907 (6%) Query: 22 LLAKLSGANNFR--LALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLI 79 L A L A +AL+ PAG G+TT++ ++ D+ + + R Sbjct: 20 LDALLDRARTGGPVVALVEGPAGIGRTTVLRRFLHRHADLQVTAAAGLPWESSR-----N 74 Query: 80 AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 A+ + A E PL +V+DD H +PV Sbjct: 75 GALARRLLDDDPRHLPAPPDAADAVDLGTALAGRWESRAGEGPLVVVVDDAH-CADPVSL 133 Query: 140 ESMRFFIRHQPENLTLVVLSRNLPQLGIANLRV---RDQLLEIGSQQLAFTHQEAKQFFD 196 +++ + + LV+L+R R D+L + E + Sbjct: 134 QAITSGLARLRDVAVLVLLARATGWPAAGEPRAVEVLDRLPAVPVPVPPLGPAETRLLAA 193 Query: 197 CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLV 256 + + + + R+C +G L L T A S + S + + Sbjct: 194 RIAAVDLPLSVARRLCTHTAGIPRHL----LELLNETPPARWSDWQTRLPVPSRVQQRV- 248 Query: 257 DEVLDNVDLATRHFLLKSAIL-RSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTG 315 LD R + +A+L + A + + L+E GL Sbjct: 249 RRTLDGCPRPARALVEAAAVLGPTPVLADAAALAEVSDPIGALDEACAAGLLEATAGHGL 308 Query: 316 EWFCYHPLF-GNFLRQRCQWELAAEL-------------PEIHRAAAESWMAQGFPSEAI 361 + + F + + L HR A G E + Sbjct: 309 DTLAFPERFVRDAVHATLTPAARHRLHLRAATLVTDDTDRLRHRVEAAPLPDAGLAEELV 368 Query: 362 HHALAAGDALMLRDIL-----------------LNHAWSLFNHSELSLLEESLKALPW-D 403 A D + ++ + LL +++ ALP + Sbjct: 369 ELARRKADEGAWAVVAGALIDAGRISPSRAAREERLLEAVDALAGAGLLGQAVDALPEVE 428 Query: 404 SLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDG 463 +L P+ + A++ + R E + L A + A A+ D Sbjct: 429 ALPSGPRRDAVLAYVAVQRGRRAEAVSYLDTAWRH--RGSDRRAAAVVCQRHVLHALADW 486 Query: 464 NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 523 + DE R A A E PG + + + +++G L G + + +Q + Sbjct: 487 DGDELVRWAGRAGEYAEPGAPAA-VESRAIVGLGLAACGAVDAAFTAYRQAVA---ESPS 542 Query: 524 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 583 S + + AQ + A E A + + +++ + + A+ + Sbjct: 543 GPQHQRSRMGLGWLSLAQDEPEAARRELESAVPTVRQTGSKRISLWALVW--LARTRFVL 600 Query: 584 ARLDEAEASARSG-IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 642 A + + + ++ + Q RG+ + A L + Sbjct: 601 GDWPGALDAVNQAEVLLGTTGLDLLRPLVHWTGAQVRALRGEQEAAERHLLLGAAAEHDY 660 Query: 643 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 702 + A L + A A ++ G Sbjct: 661 TVRTVPALLARASVAEAASDYDAVVRHLTPLVLRTPRGGLDEPGFWPWHDVYANALVVTG 720 Query: 703 EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 762 AE L R S R + +L G A+ A Sbjct: 721 RLPEAEAFLAPHEATVRRRGHRSAGARLGYVRGRLLAARGDLLGAEEAFDQARAQLAGLP 780 Query: 763 FISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLL 822 A LR++ + L Q Q + + + Sbjct: 781 MPYERARVDFAHGVTLRRVGRRRDAAALLTTARQSFAALGAQVYVERCDRELK-----TG 835 Query: 823 NHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAH 882 T LT++E V L+ +G +N+++A + ++ T++ H+ +Y KLGV Sbjct: 836 RPAPRAAEPGTENLTEQERTVATLVATGLTNKEVAASMLLSVKTVQFHLTRIYAKLGVRS 895 Query: 883 RQDAVQH 889 R + Sbjct: 896 RSELAAR 902 >UniRef50_B2HJ87 Transcriptional regulatory protein n=1 Tax=Mycobacterium marinum M RepID=B2HJ87_MYCMM Length = 914 Score = 178 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 115/916 (12%), Positives = 243/916 (26%), Gaps = 76/916 (8%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQ-------QERFASYLI 79 + + ++ AG GKTTL++ D+ + + + ++ L+ Sbjct: 23 ARRGESGVLVLRGDAGIGKTTLLTDLVDNAPDLRVLRVRGAEMEMELTYSGVQQLCGPLM 82 Query: 80 AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL----AEWHSPLYLVIDDYHLITN 135 + + Q E +++ + L L + A SP+ V+DD + + Sbjct: 83 SLIGQLPEPQLDALEIALGRKRGRAPDRLLLGLAVLTLVGEASRASPILCVVDDAQWVDS 142 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF 195 + R + + +V +R+ + +A+ Sbjct: 143 ASVQALAFVARRIHVDPVAMVFATRDRGPDALTG--------HCELSLQGLEDHDARLVL 194 Query: 196 DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYL 255 + + + + + + +G AL + + + + ++ Sbjct: 195 STAIPGRLNDSVAETVLAEANGNPLALLELHNALIRGELAGGYGLANATRTETQIERTFV 254 Query: 256 VDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTG 315 L + T+ FLL +A + + + G Sbjct: 255 SR--LRALPSETKTFLLVAAAESTARPEWLWAAAHRLGIGPEAAAPAEAAGLIAA---QG 309 Query: 316 EWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALML-- 373 HPL + AAE +H A A S + H A +A Sbjct: 310 SVRFRHPLIRAAVYH---SSSAAERRRVHAALAASIAGPDDDDHRVWHRAHAAEAPDAQT 366 Query: 374 RDILLNHAWSLFNHSELSLLEESLKALPWDSLLE--NPQLVLLQAWLMQSQHRYGEVNTL 431 D L A LS L+ + L A L Sbjct: 367 ADDLERSAERARARGGLSAAASFLEHATKLTPDPFVRASRALDAAMTSLEAGMPDSATRL 426 Query: 432 LARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVAT 491 +A A D A A A + A ++ L P + Sbjct: 427 VASAAAAADDELIAARCELIRAKIAFAASRGSDAPPLLLAAAQRMQRLDPSESRKAYLGA 486 Query: 492 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQ 551 + ++ + + ++ ++ A Sbjct: 487 VLASILVGRMATDQHNSSPSVAKAASNAPAAPHPPRALDVLLDGLVIRLTEGYVAAAPRL 546 Query: 552 EKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 611 A + + + + L + + +AR ++ ++ Sbjct: 547 RSAIREYLRERDIGVAEPGWHDLTARVCLDLFDQDAYNFLAARQVEDLRAAGALTMLPVA 606 Query: 612 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW----------------------- 648 L ++ G+ A + L+ ++ Sbjct: 607 LVTFAGVCVSAGNFGQADALLDESAAIIAATGAPPRPAIKTYLAAYRGQEQICREGVQQT 666 Query: 649 ------------ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 696 +S A I G A N A + + + Sbjct: 667 VDSAASRGEGYDVSVAMYAAAILHNGLGQYQEAFNAAASGA--RYDDVGMCGYLLGELIE 724 Query: 697 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 756 A + E A L L + ++ + L + + + + + + Sbjct: 725 AAVRCKEHNAATEALGRLLKRTKASGTPTALGIGASATALVSDGSIADAAYREAITHLRR 784 Query: 757 LANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDEN 816 + GE + ++ R+ + L AQ + R + + E Sbjct: 785 SPVAVHLARTHLTYGEWLRRERRRSEARSQLRIAYDMFAQMGAAGFAERARRELSATGEA 844 Query: 817 FVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQ 876 V T LT +E + L GY+N +IAG L ++A T++ H+ ++ Sbjct: 845 VY--------VQPTGITVDLTTQESHIARLARDGYTNAEIAGLLFISARTVEWHLSKIFA 896 Query: 877 KLGVAHRQDAVQHAQQ 892 KLGV R++ + Sbjct: 897 KLGVTSRRELRAILME 912 >UniRef50_Q0ILD5 NlmRI n=1 Tax=Streptomyces nanchangensis RepID=Q0ILD5_9ACTO Length = 940 Score = 178 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 143/942 (15%), Positives = 267/942 (28%), Gaps = 89/942 (9%) Query: 6 KLSRPVRLDHTVVRERLLAKLSG------ANNFRLALITSPAGYGKTTLISQWAAGKN-- 57 KLS P V R ++ L+ + +I S G G+T L+ ++ Sbjct: 2 KLSEPSYYPEIVERSEEISLLAQDLANTKRGEGAVVVIHSGPGVGRTALLDEFLRQSGNS 61 Query: 58 DIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELA 117 + + + + A+ A + + +LF L Sbjct: 62 GARVCAATGSAAETGNELGVVTQLFPEDGPIAAAVWLARALDDHHGDPSPDADRLFDMLR 121 Query: 118 E--WHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVL----SRNLPQLGIANLR 171 PL L +DD L + + R + + +V+ S LP A L Sbjct: 122 GEFRQGPLVLAVDDVQLADAASLRFLLHLIRRLRTTPVLIVLTEPVGSCALPLAFQAELL 181 Query: 172 VRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQ 231 + + Q L + + + ++ A +++ G ++ + R Sbjct: 182 RHPRCRRLRLQPL--SVDGVTRMIEPYVAETEVARLATQFHAVSGGNPVLVRGLLADHRA 239 Query: 232 NTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRS-MNDALITRV-- 288 + + LV D D + A+L + AL+ + Sbjct: 240 GQRLEEQGIGAQYNGYPAFTQAALVSAYRD--DPVLFEVVCGIAVLGENASPALVACLVD 297 Query: 289 TGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAA 348 G + + + L G F PL L + E E +HR AA Sbjct: 298 RGADVVARVMTALNTASLL------NGPAFRS-PLVAKALLELLDVETRGE---LHRRAA 347 Query: 349 ESWMAQGFPSEAIHHALAAG--DALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLL 406 E A + H L A + LL A + L+ + Sbjct: 348 ELLHADAALPADVAHHLLATPIAESWVLPTLLAAAEQAVQGGGQDFRLDCLRLAGRQAAT 407 Query: 407 EN----------------------PQLVLLQAWLMQ----------------SQHRYGEV 428 E P L L A L + E Sbjct: 408 EEERAAVVAARVRIGWEIDPRLITPWLGELGAALRRGHVGSSDAAWTVKHFVWHDHVEEA 467 Query: 429 NTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI 488 +L+ ++ + E + + A P + Sbjct: 468 ADILSALMERTEENSDAHAELEIVRHWVRYTCPTLLEGSVDADAPSLSGPFPQRFQLRPA 527 Query: 489 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 548 + L +G ++ A+ ++ + R + ++ +L A Sbjct: 528 SYAVEMLGRLFTEGPCDQAAAMAEEILRGCR---FGETTVEAVEGALLVLVYAERPGRAL 584 Query: 549 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 608 E + + L IRA++ L+EAE A + +S Sbjct: 585 HWCEALLEQAGDH--PTGTAAAILSSIRAEIALRQGALEEAETYADRALNAISRLGWGVA 642 Query: 609 LQC-LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA 667 + LA+ ++ ++A G A + LN+ + G + + R Y T Sbjct: 643 IGSPLAVRVRAAMAAGRTGLAGAWLNQ---DVPQGMFRTRHGLLYMHARGHYHLATDRPT 699 Query: 668 AAANWL---RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 724 A AK + + A A + LG A + E Sbjct: 700 VALEDFLTCGRLAKEWGMDVPTFLPWRTSAALAHLALGNGSRASALAREQLTRPGGGWPR 759 Query: 725 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQL 784 +L +L +++ L G + Q L + Sbjct: 760 CRAVSLRVLAATSEL-----DRRPALLRESVNLLESCGDHVELLHSLADQFQALSEAGAP 814 Query: 785 NTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVL 844 +H A+ + + +E + + + + LT E +V Sbjct: 815 AKARIAARH-ARTVADNCGTETLFRRLFKEEVPEDTDESADFGQDHQGFASLTDAERRVT 873 Query: 845 GLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 L GYSN +I +L + +T++ H+ +Y+KLGV +R D Sbjct: 874 ALAALGYSNREIGRKLFITKSTVEQHLTRVYRKLGVRNRADL 915 >UniRef50_A4FHX0 Transcriptional regulator, LuxR family n=8 Tax=Actinomycetales RepID=A4FHX0_SACEN Length = 900 Score = 178 bits (452), Expect = 9e-43, Method: Composition-based stats. Identities = 138/907 (15%), Positives = 252/907 (27%), Gaps = 75/907 (8%) Query: 22 LLAKLSGANNFRL--ALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLI 79 L + A R +++ AG GK+TL + A W++ Sbjct: 18 LEGLVREAGEHRCGFVVVSGAAGTGKSTLGRRLLARHEGPAWWA---------------T 62 Query: 80 AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 AA ++ + + + + A ++ ++ LA V+DD H + Sbjct: 63 AAPWESRQPYGVVAQMLPDLDVGAGPVAVAERVADRLAASDGTTVAVVDDGHWADEESLQ 122 Query: 140 ESMRFFIRHQPENLTLV-VLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCR 198 H L +V P A L + ++ + T + + R Sbjct: 123 ALASVVRHHPRARLLVVAFAVTGDPHASAATLELLPRIATAEIRLSPLTAAQVNELAAAR 182 Query: 199 LSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDE 258 + + + R+C G A + + A R G+ A V E Sbjct: 183 -GVVLHPSIAERLCHHTQGAARHIAQLLDEV-----PAATWTRFDPGLPAPAAVAARVRE 236 Query: 259 VLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR--LEEIERQGLFLQRMDDTGE 316 +L R F+ +A+L + + + L+E GL E Sbjct: 237 LLAGCSPTVRAFVEATAVLGPGTAVRDAALLAGVDDGLLTVLDEACATGLVRLAPRGLAE 296 Query: 317 WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDI 376 P+ +HR AA+ + A D + + Sbjct: 297 VGPADPM---VRAAVLAALAPGRRSGLHRRAADLVDDPARKLRLLVAASPVPDPAVADRL 353 Query: 377 LLNHAWSLFNHSELSLLEESLKA----------------------------------LPW 402 + + A Sbjct: 354 DALATERASEGAWAEAASLLIDASRLTEDRLERESRISRAVDALIGAGDVSAAAALVPEV 413 Query: 403 DSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAIND 462 +SL E P + +L + R E + L RA + R+ + A A+ Sbjct: 414 ESLRETPLRNAVLGYLAVVRGRVAEAESRLGRAWSLVNAERDPDVAALICQRYVLHALVR 473 Query: 463 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 522 E A A+ P + + A ++ G L G ++ + + + Sbjct: 474 CRAGELVTWADRAISLAGP-DAPAAVEAAAIRGLGLAATGRAGQARRDYAR---LGERVR 529 Query: 523 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 582 A ++ + + + A E A ++ + RAQLL Sbjct: 530 HGAQAQRVMMARGWLDLLTDAVDDARAELESAVPTTFLGGSTRISLWARAWLARAQLL-- 587 Query: 583 WARLDEAEASARSGIEVLSSYQPQQQLQCLAML-IQCSLARGDLDNARSQLNRLENLLGN 641 D+A + R +L L + RG+ + A L R + + Sbjct: 588 AGAWDDAVRTVRDAAPLLERSGIVLTGPLLHWTEVTVHALRGEWEQAEQALLRCDAGPQD 647 Query: 642 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 701 + A + A + L + + A A +L Sbjct: 648 YEIMRVPTYLARAQVAEARADSAGVLRALHPLTQSWAGGGIDEPGHWPWHDMYAHALVLE 707 Query: 702 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT 761 G E A+ L A + S R +L G + A AL+L Sbjct: 708 GRHEEADEFLLPHERLAATREHASARARLAAARGRLLGAQGDPAAATTAFEQALELLEGL 767 Query: 762 GFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERL 821 A Q LR+ + + + + + Sbjct: 768 PLRYDHARVAFAYGQTLRRAGKRREADAVLTTARDGFAAMGAATYVERCDRELKAGGVHT 827 Query: 822 LNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVA 881 L + LT +E V L+ G SN + A EL ++ T++ H+ +Y KLG+ Sbjct: 828 LRAERA-----FNELTPQEEAVARLVARGLSNREAAAELFLSTKTVQYHLTRIYTKLGIR 882 Query: 882 HRQDAVQ 888 R + Sbjct: 883 SRAELAA 889 >UniRef50_C9YYH7 Putative regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YYH7_STRSW Length = 923 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 126/923 (13%), Positives = 257/923 (27%), Gaps = 80/923 (8%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWAAGKNDIG--WYSLDEGDNQQERFASYLIAAVQQ 84 S N + L++ G GK+ L+ +A + G + +++ + V+ Sbjct: 20 SRHGNGHVVLVSGSVGIGKSELLYAFAEEASSTGSEVLRAVGREEERDVPFGIVHQLVRD 79 Query: 85 ATNGHCAICETMAQKRQYASLTSLFAQLFIEL--------------AEWHSPLYLVIDDY 130 + + + +AS L A L L +DD Sbjct: 80 ISLPAPLRAQMTVLEDSFASGHPPARHESATLQAHVARSLCRALLDAAGAGGLLLCVDDV 139 Query: 131 HLITNPVIHESMRFFIRHQPENLTLVVL----SRNLPQLGIANLRVRDQLLEIGSQQLAF 186 + + ++ + + LV +R+ L L + L Sbjct: 140 QHADSASLSCLLQLLPHTRSAPVMLVFSRPDSARHGLPLLSTELLRHPFYRRVRLAPL-- 197 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 + + + L + A G + + R A Sbjct: 198 SPEGTTELTTKALGTEEAQALGPVYHSLSGGNPLLVHALLRDHRDRQADGDGDAGSEVPP 257 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMN-DALITRVT--GEENGQMRLEEIER 303 + ++ L + A+L S + I R+ G + L +E Sbjct: 258 AGEEFAQAVLA-CLHGREPDVLGVARTMALLDSCSSPDRIGRLLRLGPSSVANALRHMEA 316 Query: 304 QGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI-H 362 GL G F HP + + W L AE +G P+ + Sbjct: 317 AGLV------AGHRFR-HPAARSAVLDDFPWGLLRRQR---LDVAELLHHEGLPTPTVAR 366 Query: 363 HALAAGD--ALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQ 420 H +A +L++ + ++ E L+ S Q + + Sbjct: 367 HLVAVRHVPPGWAVPVLMDASEQARRSGDVGFALECLELALSGSDDAREQALTTMMLVRL 426 Query: 421 SQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP 480 + T R + + A ++ + G DEA + + ++P Sbjct: 427 EWQLNPSMVT--PRLGPLCDALLTGVLPARLTVPLSRALLWHGRFDEAAEVIRALGPKVP 484 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 + + + L+ + + A L+ +L + Sbjct: 485 GPHGQVTETREWL-------RNRYPVMVPLLPAEDGPGIRDSREPAAARPLLLAETVLGS 537 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 600 + A Q++ L+ ++ + A + +A + SA+ E Sbjct: 538 TLRNGGDESSARSAEQVLRSCPLDDTSLYALESALLALV-YADRLGQASVWSAKLLQEAT 596 Query: 601 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 + P Q + A+ + +L +GDL A + L + + + + V+ Sbjct: 597 ARQAPTWQAKLTAIRAELALRQGDLPEACALARSAMTHLSPRSWGVAVGAPLSTL-VLAA 655 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS 720 G +LRH+ + + + + G A + AR+ Sbjct: 656 TAMGADDVTEEYLRHSVPEAISESRYGLQYLYARGHHHLAAGRVHAALDDFLRCGDQARA 715 Query: 721 LRL-MSDLNRNLLLLNQLYWQAGRKSDAQRVL---------------------------- 751 + + + + G++ +R+ Sbjct: 716 WDMDLPAFLPWRSGAAAAHLRLGQRDQVRRLADAELARPGSAKSRSRGVAMCLLAEIAEP 775 Query: 752 -LDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKF 810 A L G + E + E E R Sbjct: 776 RRRASLLLEAVGVLRLTGDRLELARALAALSSAQRAIGEAELARRALYQALHLADVCGAE 835 Query: 811 AHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTH 870 P P + PL+ E +V L G SN +IA +L V +T++ H Sbjct: 836 RLQPSQSPRGREGAPPDPVTLPRDPLSAAERRVASLAALGNSNREIADQLCVTISTVEQH 895 Query: 871 IRNLYQKLGVAHRQDAVQHAQQL 893 + +Y+KL V R + + + L Sbjct: 896 LTRVYRKLNVTRRAELPREFKAL 918 >UniRef50_UPI0001C3103E transcriptional regulator, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3103E Length = 938 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 115/854 (13%), Positives = 228/854 (26%), Gaps = 60/854 (7%) Query: 72 ERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYH 131 R + L + A + A PL V+DD Sbjct: 100 RRALDCAFGLAESEPAAPGEPAAPGETAGATPFLVGVAALTLLSEAAGERPLLCVVDDLQ 159 Query: 132 LITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEA 191 R + E + L++ R+ + + + + L +A Sbjct: 160 WADAASRDALAFAARRLRAEPIALLLGIRDDEAVPVDTAGIAELRLT------GLGDGDA 213 Query: 192 KQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHL 251 D R + + A + G AL + + + H AR + Sbjct: 214 SALLDERWGNRVAPATREALMRVTGGNPLALIELPGALTGWQLAGHDPAREPLPLAGELE 273 Query: 252 SDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRM 311 +L A + LL +A S A I ++ GL Sbjct: 274 QAFLERA--RRRGPAVQRLLLLAAAEGSGQLATIRAAADLLELDA--SALDSAGLAELVH 329 Query: 312 DDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDAL 371 D +HPL + + + + A A G Sbjct: 330 VDGAMVAFHHPLVRSAVYHGASAADRRAAHAALARSG---VGDDSRRAWHRAAAAEGPDE 386 Query: 372 MLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLE--NPQLVLLQAWLMQSQHRYGEVN 429 + L A S + L + E + +L A G Sbjct: 387 EVARELECSAEKTLRRSGHAAAAAELARAAELTSDEPLRVRRLLGAADAAWHGGDTGRAL 446 Query: 430 TLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIV 489 LL AE + +D + LR + G P+E+ L A EE + + Sbjct: 447 ALLDAAEGRAE-PGDDVAQLDVRLLRGLIEQRSGIPEESVALLVPAAEEAVAIDPHRAVR 505 Query: 490 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW-------------------- 529 + + G+LT L ++MA + + Sbjct: 506 LLNAAADSAFHAGDLTVMDQLAGLAQRMAPLAEGDDAEVLRLMLARVAMAQEEHPQPLPA 565 Query: 530 -------------SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 576 SL + + + G + ++ + + Sbjct: 566 ELAAALERLDAPESLARAGGLAWGVGEYDLGRRLRARSVAQARTRGAAGTLAWALAGVVV 625 Query: 577 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA-MLIQCSLARGDLDNARSQLNRL 635 L+ AEA+A+ + + A L +L RG + +QL + Sbjct: 626 DDLM--RGDFATAEANAQEALRLARETGQPNTACLHAATLGNLALLRGREEEGVAQLAAV 683 Query: 636 ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ-GQWRNI 694 + S + A A + + ++ + Sbjct: 684 LEEAMRRRLAHPLTSVRAALADAALARGRADEAVAQFEQMWRGGPVPHHPGIAHYSLAAF 743 Query: 695 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 754 A + G E + E M L + A ++A+R+ + Sbjct: 744 VEASVRAGRPEACRDLFAGYEEWVLRTGAMPMLAQLDRCRA---LYAEDPAEAERLFERS 800 Query: 755 LKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFD 814 L+L + + ++ + + L + +A Sbjct: 801 LELHAGNDQR----FDEARTELLFGEFLRRERRRVDARVHLRAALDTFERIGAPVWAERA 856 Query: 815 ENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNL 874 + + LT +E Q++ + G N ++A +L ++ T+ H+R + Sbjct: 857 RAELRASGETARRRDPSTIDQLTPQELQIVRSVAGGAMNREVAAQLFISPRTVDYHLRKV 916 Query: 875 YQKLGVAHRQDAVQ 888 ++KLG++ R + ++ Sbjct: 917 FRKLGISSRAELIR 930 >UniRef50_C5C1K1 Transcriptional regulator, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C1K1_BEUC1 Length = 872 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 147/899 (16%), Positives = 260/899 (28%), Gaps = 64/899 (7%) Query: 13 LDHTVVRERLLAKLSGA------NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDE 66 + RER LA L+ + LIT AG GKT+L+ ++ A + + Sbjct: 9 GPQLLERERELAVLAAVVDRARQGEGGVVLITGEAGVGKTSLVRRFLADADGVRSRVGLA 68 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLV 126 D R L E R + A + E PL LV Sbjct: 69 EDLVAARTLGPL--------------REMFPDVRDLHEPGAALAAVEAEARAGPGPLALV 114 Query: 127 IDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAF 186 +DD HL R + L LV+ R +R +L Sbjct: 115 VDDAHLADAATFEVLRSLGRRAETLPLVLVLAYRPDEVGADHPMRRALGVL--------- 165 Query: 187 THQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGI 246 + + + + L + + T L G Sbjct: 166 ----VGAHVHRLELHGLSEGAVAALAERSGLDPARLAGLGGNPFYLTEVLAAPDSDLPGA 221 Query: 247 NASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGL 306 + + + TR L A++ + L + LE ER GL Sbjct: 222 VRDAIVGRV-----HGLPAPTRDLLEMLALVPR-DADLGLFDGLAADVTASLERAERSGL 275 Query: 307 FLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG-FPSEAIHHAL 365 G H + L + +HR ++ + P+ +HHA+ Sbjct: 276 VRVT---EGRVAFRHDIARRALEASLPQ---SRRVHLHRRILGAFEDRRADPAVLLHHAV 329 Query: 366 AAGDALMLRDILLNHAWSLFNHSELSLLEE----SLKALPWDSLLENPQLVLLQAWLMQS 421 A + + A S + +L+ + E +L + A + + Sbjct: 330 LASEDDAVARHAPEAARSAAHGDAHREAVTICGLALRRPDLLTHAEQAELHGIAARALYA 389 Query: 422 QHRYGEVNTLLARAEHEI-KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL- 479 R + RA + D + A++ PD + + ALE L Sbjct: 390 AGRLPDAARSANRAVAIWERRDPSDPQYGAALLTSARMQTMVARPDSSLAQVRRALEVLE 449 Query: 480 PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 539 P G A +L + G+ ++ ++ MA A S + L Sbjct: 450 PAGASPLLATAHEMLANLQSIAGDSESAMGSAERARAMAVDLGERLIAARSDMHLGIALA 509 Query: 540 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 599 G A T ++ + + + A L W R+ EA V Sbjct: 510 GLGEDAEALSTLRRSVETLALLDAPEPYARATGAM--AVTLVWWGRVAEALEWLDLTDRV 567 Query: 600 LSSYQ-PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 658 S + +L +A+ +G D A + L L + + ++ ++ + Sbjct: 568 ASEHGFDLLRLHGVAIRAHAHTLQGRWDAAEAALRPLLQVDLGAAINPLPLAFLGRILLR 627 Query: 659 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA 718 GD+ W A + + A + + + E + A Sbjct: 628 RGDADGDRLVDEAWPLALATGQVRRIAPVAAIRTERAWLR---RDPGAVRSLGEHALDVA 684 Query: 719 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL 778 L L L +AG + + R + EA Sbjct: 685 AQGHLRYLGGEVLRYL----RRAGDDVEVFPGCPEGFAAGIRGDHAASAAAWEEAGNPYE 740 Query: 779 RQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE--RLLNHPEVPELIRTSPL 836 L + R IL + D + L Sbjct: 741 CALELAESDDPAIAGRGVTILDRLGARATADRVRQDLRVRGVGPVPRRSAPARATTALGL 800 Query: 837 TQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 T R+ ++LGL+ G ++ +IA L ++ T+ H+ ++ LGV R+DAV ++ + Sbjct: 801 TPRQHEILGLVARGLTSPEIADCLYLSRRTVDNHVADVLAALGVPSRRDAVATFRRHEQ 859 >UniRef50_D0LA93 Regulatory protein LuxR n=3 Tax=Corynebacterineae RepID=D0LA93_GORB4 Length = 867 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 154/896 (17%), Positives = 258/896 (28%), Gaps = 58/896 (6%) Query: 15 HTVVRERLLAKLSGANNFRL-----ALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDN 69 V R GA R ++T AG GKTTL Q ++ W E Sbjct: 9 PLVERRVEFDAARGALTTRTPERCGVVLTGSAGVGKTTLARQVTQSLPNVRWVVGSESAR 68 Query: 70 QQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDD 129 A + ++ L A L + L +DD Sbjct: 69 AI----------------PLGAFAPIVPPSTATDAVGYLSAARESLLDAGA--VILGVDD 110 Query: 130 YHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQ 189 HL+ +P+ + + V S + +L L I AFT + Sbjct: 111 AHLL-DPLSATLLHQLAIDGDARIIATVRSGETVPDAVLSLWKDHYLERIELD--AFTRE 167 Query: 190 EAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINAS 249 ++ + L P+E + + G A L + AR+ + NAS Sbjct: 168 QSIDLLEQMLGGPVEGLSVDLMWEASGGNALFLHHLVDGAREAGTLRRDAGIWQLRGNAS 227 Query: 250 HLSDY--LVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLF 307 +++ L++ + ++ + L ++ + ++ + GE+ +EE ER+GL Sbjct: 228 ITTEFATLLESRITSLPDGVNNALNLLSLCEPIEVDMLVDLAGEDE----VEEAERRGLL 283 Query: 308 LQRMDDTGEWFCY-HPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALA 366 D + HPL G +R+R L A + I A Sbjct: 284 RITEDGRQLVARFAHPLLGEVVRRRIGRLRGRRLRGQLANAIAARGRPRSGPGRIRLADL 343 Query: 367 A--GDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 A GD+ I+L+ A S S+++ E +A + +L ++ + Q R Sbjct: 344 AIDGDSDADSRIMLDAARSALALSDVAAAERFARAAVEHGAGIDGLDLLSRS--LLWQGR 401 Query: 425 YGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF 484 EV +A + E D A A DG+ + A P Sbjct: 402 PDEVEATMAAIDPETLDEVGVLRWALTRLANFDFAQGDGHGGDDMLALLRARIHTPSLVL 461 Query: 485 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 544 VA GEL + ++ + Y Q+S L G Sbjct: 462 LVDAVA----SVRAMMAGELEAAAEQARRVLRDDAVIPAAAYWAAFAAQRSMAL--TGEF 515 Query: 545 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 604 E + + Q L RL +A A + S Q Sbjct: 516 DEVAEIARHV----DIPPSMDGLVRYSADFGELQALIYAGRLTDARTLAEGCAQFSSPGQ 571 Query: 605 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 664 + +A G ++A L + L S W A G Sbjct: 572 YLAWGMVQTFVGVLEVAEGRYEHAVRSLRQATAAL-TSDVMSAWSFPARIALCTILAQLG 630 Query: 665 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM 724 A + + R +A A I GE + +E + A + Sbjct: 631 RCDEAKQLAASVRSDLRPHVAVFEPFQR-VAEAWIAAGEGQLSEAITIARAAAAVAASSC 689 Query: 725 SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQL 784 L +D L + + H A L + Sbjct: 690 GRAIAAEALHASARLGDPDAADMLAELSTHVDGELIGIYTRHAAAVASKGAAALEDCSRE 749 Query: 785 ---------NTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSP 835 + A E R L P + + P Sbjct: 750 FEELGARASAADAAAQASTALADGGERTAAVRAAGTAHRLAAECGGLVTPAMITMEDPLP 809 Query: 836 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 LT RE ++ L+ +G SN +I L ++ T++ H+ K+ V R + Sbjct: 810 LTVREREIANLVAAGLSNREIGERLSLSTRTVEGHVYRACMKVDVEDRAGLAARIR 865 >UniRef50_B8HJC4 Transcriptional activator domain protein n=6 Tax=Arthrobacter RepID=B8HJC4_ARTCA Length = 985 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 135/704 (19%), Positives = 232/704 (32%), Gaps = 40/704 (5%) Query: 19 RERLLAKLSG-ANNFRLALITSPAGYGKTTLISQWAAG-KNDIGWYSLDEGDNQQERFAS 76 R RL S N R+ + + AG GKTT I Q AA I W +LD D R Sbjct: 2 RPRLNQLFSQLINQNRVVWVAATAGSGKTTAIVQAAATWGGPIAWLTLDGTDAAPGRLLI 61 Query: 77 YLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYH-LITN 135 YL AA+ + + R + + L LV+D L+ Sbjct: 62 YLEAAIAAHVPDAAGLASSALTARIPHPE----VAGLLAESVGDEDLLLVLDGLENLVGA 117 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFF 195 + + +R+ P L +V+L+R + ++ D++ IG + LAFT +EA Sbjct: 118 YEALDVVGAVVRYAPVGLKVVLLTRVDLPIDLSAQAGVDRVATIGEEDLAFTPEEAA--- 174 Query: 196 DCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYL 255 + + I ++S + GW T + A +R G A L YL Sbjct: 175 GALVEAGITDIDASSAVEATGGWVTGVLFEAWHSRLYISG--------TGGEADPLHGYL 226 Query: 256 VDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTG 315 ++L + R FL+ S++L + + + G+ N L + L + + T Sbjct: 227 ASQILAKLAPEEREFLIVSSLLDEVTPSRAAAL-GQSNAGDLLVRLRSHHLPVSWISGT- 284 Query: 316 EWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRD 375 HP F +L + AE+ RA + + +G EA+ LAA + D Sbjct: 285 YRMRCHPRFREYLVTCLERRGKAEVQATRRAYGDLLVTEGHLEEAVEQFLAAEELDRAVD 344 Query: 376 ILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARA 435 + + + + E L L + +L L ++ Y + + Sbjct: 345 AAEVVIGDVLDRLDFVVAERWLGYLAPPGSSGSRRLGPATLMLSIAREDYRKGVAIADDL 404 Query: 436 EHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW------FYSRIV 489 + + A+ A + D+ + LA +R Sbjct: 405 QANGVRDDLARLSPRGGAIMAWCYWHLDRLDDMRAVIDLAPNSPEIDAVRYLLSLATRRE 464 Query: 490 ATSVLGEVLHCKGELT----RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ 545 AT G L R + ++++ D A S + L A G L Sbjct: 465 ATGAYPAPTLSGGPLDALVMRVHYAHGRLSEVSKMPDSPWAAAVSAPWRVGALRATGRLT 524 Query: 546 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 605 A E A + H MH + +L+ +EA+ G ++ + Sbjct: 525 EALELYRSA----DAGHWAPAWMHGIVGP---ELMIDLEDTEEAQRVLAKGQGLVRASGS 577 Query: 606 QQQLQC-LAMLIQCSLAR-GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 663 + + L D A + L ++EN G + K + + Sbjct: 578 VVFEWLNRLIEAKLELRLNHDPVAALNLLEQVENAGGRHYDFISEALDTWKGLALLLSRS 637 Query: 664 GDKAAAANWLRHTAKPEFANNHF-LQGQWRNIARAQILLGEFEP 706 + A R AN L +A A+ G+ Sbjct: 638 DNDDAVVMLRRAVNSMTEANRILDLPAAAIYLAEAEWRQGDLTE 681 >UniRef50_Q3S885 Putative LuxR class regulator n=1 Tax=Streptomyces neyagawaensis RepID=Q3S885_9ACTO Length = 921 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 130/920 (14%), Positives = 266/920 (28%), Gaps = 82/920 (8%) Query: 30 NNFRLALITSPAGYGKTTLISQWAAGKNDIG--WYSLDEGDNQQERFASYLIAAVQQATN 87 + L++ AG GK+ L+ +A + G + +++ + V+ + Sbjct: 23 GKGHVVLVSGSAGIGKSELLYAFAEEASATGSEVLRAVGREAERDVPFGVVHQLVRDISL 82 Query: 88 GHCAICE-----------TMAQKRQYASLTSLFAQLFIEL--AEWHSPLYLVIDDYHLIT 134 A A + L EL A L L +DD H Sbjct: 83 PAPLRTRMTELESSLASGPTAPHESAALQAHVARGLCRELLHAAGAGGLVLCVDDIHHAD 142 Query: 135 NPVIHESMRFFIRHQPENLTLVVL----SRNLPQLGIANLRVRDQLLEIGSQQLAFTHQE 190 + + + + L LV+ +R+ P L A L + L+ + Sbjct: 143 SASLSCLLHLLPHTRSARLMLVLSRPDSARHRPPLLSAELLRHPFYRRVRLSPLSL--EG 200 Query: 191 AKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH 250 + L + A + G ++ + R + + +A Sbjct: 201 TTELTAKTLGTQEAQAHGAVYHSLSGGNPLLVRAL---LRDHRDRSADGDAEPEVPSAGE 257 Query: 251 LSDYLVDEVLDNVDLATRHFLLKSAILRSMN-DALITRVT--GEENGQMRLEEIERQGLF 307 V L + A+L S + I R+ G + L +E GL Sbjct: 258 EFAQAVLACLRGGEPLVLGVARTMAVLDSCSSPDRIGRLLHLGPSSVADALRHVEAAGLV 317 Query: 308 LQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAI-HHALA 366 G + HP + + L + AE +G P+ + H +A Sbjct: 318 ------AGGCYR-HPAARSAV---LDDIPRGVLRRLRLDVAELLHHEGLPTPTVARHLVA 367 Query: 367 AGDAL--MLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHR 424 +L++ + ++ E L+ S + + Sbjct: 368 VRHVPACWAVPVLMDASEHARRSGDVGFALECLELALSGSDDVRERALASMMLARLEWQL 427 Query: 425 YGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF 484 R + + + AE ++ + G DEA L + + P Sbjct: 428 NPSTVG--PRLGPLSEALLTGVLPAELTVPLSRALLWHGRSDEAAELIRTLGPKAPGPHG 485 Query: 485 YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL 544 + L + + ++ +L + Sbjct: 486 LFPENREWLRNRYPTMVSLLPTAED------GPGGRDGREPATARPVLLAETVLGSTLRN 539 Query: 545 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS-SY 603 + A Q++ L++ ++ + A + RL +A + ++ + Sbjct: 540 GGDESSAWSAEQVLRSCGLDEANLYALESALLALVY--ADRLGQASIWSAKLLQEATVRQ 597 Query: 604 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 663 P Q + A+ + +L +GDL+ A + R L + + + + V+ Sbjct: 598 VPTWQAKITAIRAELALRQGDLNEACALARRAMTHLSPRSWGVAVGAPLSTL-VLAATAM 656 Query: 664 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 723 G A +LRH+ + + + + + + A + AR+ + Sbjct: 657 GADGVAEEYLRHSVPEAISESRYGLQYLYARGQHHLATNQVHAALDDFLRCGDRARAWDM 716 Query: 724 -MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL-------------------KLANRTGF 763 + + + G++ +R+ L ++A Sbjct: 717 DLPSFLPWRSGAAAAHLRLGQRDQVRRLAEAELARPGSAKSRSRGVAMCLLAEIAEPRRR 776 Query: 764 ISHFVIEGEAMAQQLRQLIQL----------NTLPELEQHRAQRILREINQHHRHKFAHF 813 S + + +L + E +Q R Sbjct: 777 TSLLLEAVSVLRLAGDRLELARALAALSSAQRAIGEADQARRALYQALHLADVCGAEHLQ 836 Query: 814 DENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRN 873 + P P PL+ E +V L G+SN +IA +L V +T++ H+ Sbjct: 837 PSPQLRGREETPADPITAPRDPLSAAERRVASLAALGHSNREIADQLCVTISTVEQHLTR 896 Query: 874 LYQKLGVAHRQDAVQHAQQL 893 +Y+KL V R D Q L Sbjct: 897 VYRKLNVTRRADLPSEFQTL 916 >UniRef50_A1TGW8 Regulatory protein, LuxR n=1 Tax=Mycobacterium vanbaalenii PYR-1 RepID=A1TGW8_MYCVP Length = 921 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 141/914 (15%), Positives = 249/914 (27%), Gaps = 85/914 (9%) Query: 36 LITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAA-------------- 81 LI AG GKTT+ + + G+ L Q E ++ A Sbjct: 34 LIEGDAGIGKTTMWNTVVQRAAEAGFVVLTARAGQAESGLAHAAVADLLSAVDPEIVDAL 93 Query: 82 --VQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIH 139 +Q+ G + + + T+ + A +P+ + IDD + + Sbjct: 94 PDMQRLAAGRVQLRDHAGGRPADERATAAALLSAVHAAGARAPVLIAIDDVQWL-DASSR 152 Query: 140 ESMRFFIRHQPENLTLVVLSRN--LPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDC 197 + F R + +V R Q A+ Q + Sbjct: 153 AVLAFAARRLKGAVGVVATERTGQQSQERAASWLQVGTGGLARVQVAPMSLGALHSMLSD 212 Query: 198 RLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVD 257 RL RI + G +A G+ +V Sbjct: 213 RLGRRFSRPAIVRIAEASGGNPLYALELARVM--------DGDMLRPGVRLPSTLAEVVG 264 Query: 258 EVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEW 317 +D +D R LL +A + L+ + + +E + + Sbjct: 265 LRVDKLDDDVRDVLLVAASVTQPTVDLLAQTLAV-RAEQVTALLESAEVEGVIAIEGNRV 323 Query: 318 FCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDIL 377 HPL + + A E HR A+ + H ALAA A Sbjct: 324 RFTHPLLASGIYDSAA---PARRREFHRRLADIQTQPELRAR--HLALAATVADDATLAT 378 Query: 378 LNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEH 437 L+ A L L + + A LL + Sbjct: 379 LDAAADSARARGAPAAAAELVELAIRLGGDRVSRRIRAAEHHYVAGDMPRAAELLDQVT- 437 Query: 438 EIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEV 497 D+R + A LRA V I + + A L + A + R+ + L Sbjct: 438 --GDLRPGVLRAIALNLRAGVRIFEDDYAGAVVLLERACADAADNDE-VRVSSLVALAFA 494 Query: 498 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 557 G A + +A + V +L + G +A +L Sbjct: 495 QGMVGAFEDQFASALRAVAVAERAGVPALTSQALTTWVYVRLQAGG-GLDGPALRRAVEL 553 Query: 558 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 617 +P ++ A + + A L + Sbjct: 554 EGADGDTPIPFRASAMQGLALAVTGQLEDAD-RQLAEIAQRCLHRGAEHDLMAVTGYRTL 612 Query: 618 CSLARGDLDNARSQLNR-----------------------------------LENLLGNG 642 ++ RG D+A L G Sbjct: 613 IAIWRGRFDDAGRLAADLLERARQVGGSMALAMSICAAAAAYRGEETQAREFARQALEQG 672 Query: 643 KYHSDWISNANKVRVIYWQMTGDKAAAANWLR---HTAKPEFANNHFLQGQWRNIARAQI 699 H + A G+ A +P + A A I Sbjct: 673 AGHVPLTAWARATLAFLEVSLGEHHRAVEAAEPLMALYRPFSGTEVITGSFLPDAAEALI 732 Query: 700 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 759 LG + AE ++ L N +L L L G A + A+ + Sbjct: 733 ALGRHDDAEQMVGALERNGAALDRPWMLAVGNRCRALLLVAQGDLDGALGAVERAMAEHD 792 Query: 760 RTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVE 819 R E + ++++ + + + LR+ + +A + Sbjct: 793 RL----PMPFERARTQLVMGEVLRRLRRRDAAEQIVREALRQFDGLGSPVWADRARKILA 848 Query: 820 RLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLG 879 R+ + LT E ++ + SG SN+++A L V+ T++T++ +Y+KLG Sbjct: 849 RVNGSGR----SGSVVLTDSELRIAEHVASGMSNKEVADALYVSVKTVETNLTRVYRKLG 904 Query: 880 VAHRQDAVQHAQQL 893 + R QL Sbjct: 905 IRSRAQLGTQLAQL 918 >UniRef50_C7QKM8 Transcriptional regulator, LuxR family n=2 Tax=cellular organisms RepID=C7QKM8_CATAD Length = 1084 Score = 175 bits (445), Expect = 6e-42, Method: Composition-based stats. Identities = 137/964 (14%), Positives = 251/964 (26%), Gaps = 131/964 (13%) Query: 47 TLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLT 106 + Q + L + + + + +L Sbjct: 129 AALRQLLRDLPGAFGDGDGVRRRELAWLLPELAEGLSGDDSPRGGMMRPAGMEHHSDALP 188 Query: 107 SL--------------FAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPEN 152 ++ +E L LV++D H + + + F R ++ Sbjct: 189 AVTRAGEQSVRGHLFDAVLGLLEDLGSDETLLLVLEDLHWA-DRSTRDLLGFLSRSLRDS 247 Query: 153 LTLVVLS-------RNLPQLG-IANLRVRDQLLEIGSQQLAFTHQEAKQFFDC---RLSS 201 LVV + R P +A L + I L T E + R Sbjct: 248 RVLVVGTYRTDDLHRGHPLRPFLAELDRIRGVRRIDLGPL--TTGETAEQLAAIYGRTGR 305 Query: 202 PIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLD 261 + + + G + + G S L+ ++ Sbjct: 306 DLPPGFAEEVFARAEGNP----FFTEELACAADGSSLMPSDVGGFALSDTLRDLLLIKVE 361 Query: 262 NVDLATRHFLLKS-AILRSMNDALITRVTGEENGQ--MRLEEIERQGLFLQRMDDTGEWF 318 + T+ L A L ++ + VTG + + ++ + + + T F Sbjct: 362 QLPEPTQRMLRLLSAALPPVDHRFLLLVTGATDDELNEQIRPAFQAHILIPGEGPTSYRF 421 Query: 319 CYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQ-------GFPSEAIHHALAAGDAL 371 H L + L E +HR AE A+ E HH +A D Sbjct: 422 R-HALLREAVHNEL---LPGEHSALHRKYAELLEAEPSLVAAEAREVELAHHWYSARDYP 477 Query: 372 MLRDILLNHAWSLFNHSELSLLEESLKALP------WDSLLENPQLVLLQAWLMQSQHRY 425 D L A + + L+ ++ LE +L+ A Sbjct: 478 RAYDAALRAAEAADARYAYVEEHQMLERALDLWDQVPETGLEYARLLYKTACAAHLAGDP 537 Query: 426 GEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAER--------------- 470 +L +A + ++ + A + LR++ G D Sbjct: 538 HRALSLTDKALKRVDPDQDPELAALLHHLRSRDHHILGRGDGMADIWAALDLVDGEQCPQ 597 Query: 471 --------------------------LAKLALEELPPGWFYSRIVATSVLGEVLHCK--- 501 + AL RI A G VL + Sbjct: 598 VRVQITNSASFIKMLTSDDIDAALRFAEETALLADKIDSDLYRIAAAITKGTVLAGQVSL 657 Query: 502 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 561 G LA+++Q + I L Q A + + + Sbjct: 658 GTHEEGLAILRQAIIDGLGYGDPGIIGRGYINLCSALETLDRHQEAVQVARAGLAELKRR 717 Query: 562 HLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA 621 + L A+ L A + A+A+ S +++ L +L Sbjct: 718 GVRLRVAESMLWLNMAESLIALGDWEGADAALTSSLDL--DPPGIHGATTHEYLADLALL 775 Query: 622 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 681 GD ++AR + + H + + +T + A + Sbjct: 776 GGDAEHARGEAALGARIPSRTFEHQYALPGIRREIEKAVWLTRSISDARTAFQVFLDKPQ 835 Query: 682 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 741 + WR + + + + ARS D + ++ Sbjct: 836 FLGD-ERYAWRVLTAMAMAEADHAELRRSAQPTRAAARSGTSAVDAAGSAMVAALAERAG 894 Query: 742 GRKS----------------------DAQRVLLDALKLANRTG----------FISHFVI 769 + A +LA R G F + Sbjct: 895 RLPALTPSQAAAAAQVAAELARWRGVAGAAEWATASELAAREGVHAHQAAYINFRASEAS 954 Query: 770 EGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPE 829 +L++ L R + D + + Sbjct: 955 AANGDRDHAAELLRRAVKAIATLPAGPLCLEVQALARRARLDISDCMPEAPVPGGGRGAD 1014 Query: 830 LIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 LT RE +VL L+ G SN QI L ++ T H+ N+ KLGV+ R +A Sbjct: 1015 SGSPLGLTARELEVLALVAQGLSNRQIGERLFISTKTASVHVSNILAKLGVSGRGEAAAV 1074 Query: 890 AQQL 893 A +L Sbjct: 1075 AHRL 1078 >UniRef50_Q5QES7 AmphRI n=2 Tax=Streptomyces nodosus RepID=Q5QES7_9ACTO Length = 948 Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats. Identities = 139/936 (14%), Positives = 238/936 (25%), Gaps = 99/936 (10%) Query: 29 ANNFRLALITSPAGYGKTTLISQWAAGKN--------------------DIGWYSLDEGD 68 R A++T+P+GYGK+ L+ G +L Sbjct: 21 HGETRCAVLTAPSGYGKSALLDALLRSPACQDMTVLRGRCGGASAGAGAYAGLRTLFAPA 80 Query: 69 NQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVID 128 + A + A + PL LV+D Sbjct: 81 DAPAPDHHPEAAGADDPAVFLPGPGDGRPFTLTSAYPVFRRLSSHVLRLTADRPLVLVLD 140 Query: 129 DYHLITNPVIHESMRFFIRHQPENLTLVVLSRN-----LPQLGIANLRVRDQLLEIGSQQ 183 D H + + F +R LV+L+R+ A+L + Sbjct: 141 DAHHCDEHSLR-WLDFLLRRAAGRPLLVLLARSSGAQLRAPRAWADLLAHPAVSVTSLGP 199 Query: 184 LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRL 243 L P + ++ +G ++ + R + ++ + Sbjct: 200 LG--ADAVGGLARQVFGVPAHPLLAQQVAAVTAGNPRTVERLLGELRSQGAAPDEAGAQR 257 Query: 244 AGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEEN---GQMRLEE 300 A ++ V ++LD R A+L V + + + Sbjct: 258 ASELGGAMAAGSVRQLLDREPPEVRSVATAIALLDGTRPPECVTVLADVDQAQADEAIAV 317 Query: 301 IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAEL-PEIHRAAAESWMAQGFPSE 359 + G L +R L + E+H AA G P E Sbjct: 318 LRHAGALTPDGAG---------LVHEAVRSELLEPLGSRRTAELHARAALLLSDAGRPVE 368 Query: 360 AIHHALA---AGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQA 416 + L + +L + A + L+ + + + L Sbjct: 369 QVAQHLMRMPCAQEPWMSAVLRDAAARAEQRGAFAEAAGYLRRVLEAEPDDAEARLRLAL 428 Query: 417 WLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQV-------AINDGNPDEAE 469 + + + + + + A A A A Sbjct: 429 AVA-----PEDPLSAVPLFRTALAGTPDTFARAGIAVQYAMACLSLPLPATCRAEILGAL 483 Query: 470 RLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTR----------------------- 506 A+ AL P VA +L G R Sbjct: 484 EAARDALGSGPERDRLRDQVAAVLLLMGRRGTGVAARQHPVTAALPYQPRTDLLQAEALA 543 Query: 507 ------SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 560 + + + AR G E ++ Sbjct: 544 GLRTALAGHSRETALKEARHAVAAASPQQPPWLLFTAAITLGLADETTEAHRALDAMLRR 603 Query: 561 QHLEQLPMHEFLV-RIRAQLLWAWARLDEAEASARSGIEVLSSYQ-PQQQLQCLAMLIQC 618 E L +R+ LL + +A A ARS I+ + + + A+L Sbjct: 604 GGDEPTAWVRVLAGSLRSFLLHRDGAVLDAAAEARSAIDTVDRTGCDVRLVAARAVLASV 663 Query: 619 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH--- 675 + RG+ A L+R+ + + + R TG A A LR Sbjct: 664 LVDRGEPRQAERLLSRMGRTEPHRSALASLL--YLHARARTRWATGHPAQALRLLRECGW 721 Query: 676 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 735 + N L W + + + E+ E AR L L Sbjct: 722 AQETAGVQNPVLAPWWADTCLILAAVRRPADGRELAEQGAERARRWGTPRALGLAALAEG 781 Query: 736 QLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRA 795 L + G+A+ Q + L Sbjct: 782 VLTPGRAGLDLLTEAAHQLSTSPAVAEYARAEHALGQALLQYGDEAGARERLRRAAGIAG 841 Query: 796 QRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQ 855 + + R P LT E +V GL SG SN Q Sbjct: 842 GCGALALAESARRLLVSAG-------GRMGHTPGTPAGGLLTTTELKVAGLAVSGASNRQ 894 Query: 856 IAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 IA L V T+++H+ N+Y+KLGV R V + Sbjct: 895 IAQRLFVTVRTVESHLTNVYRKLGVRRRDQLVVALR 930 >UniRef50_D2BFB3 Response regulator receiver protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BFB3_STRRD Length = 879 Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats. Identities = 136/898 (15%), Positives = 250/898 (27%), Gaps = 68/898 (7%) Query: 36 LITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICET 95 ++ G GK+ ++ + + + L ++ + A+ Sbjct: 2 VLLGAPGTGKSAMLDFAVDQAEGFVVLRTRGVEAESALPCAGLHGLLRPVMDRLPALPGA 61 Query: 96 MAQKRQYASLTSLF-------AQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRH 148 A+ A A + LA P+ +DD H + P R Sbjct: 62 QAEVLTRALELGAAGGGLALPASVLNLLAAVGRPVLACVDDVHHLDAPSREALFFAARRL 121 Query: 149 QPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAES 208 E + L+ +R +R + + D + A Sbjct: 122 AGEQIVLLFGARAGGTAPEGIPELRLG---------SLDEDACRLLADDLAPEGLGAELR 172 Query: 209 SRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLATR 268 + + + G AL + S + + Y + L + T Sbjct: 173 ASLIEVARGNPLALGELVGSLSAAQMAGAAAPPDTLPPGGRLWRAY--ADRLARLPAETG 230 Query: 269 HFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFL 328 + LL A ++ A + R LE ER G+ + D + P + + Sbjct: 231 NLLLLLAADPDLDMAALVRAAEPACALTLLEPAERAGILVSAAGDRHD--FRDPAMRSVV 288 Query: 329 RQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHS 388 + + + + + +L G L D L A + S Sbjct: 289 YAEASAARRRAAHRLLASVLDHDHQRLRRAWHRAVSLD-GPGDRLADELAAAASAGSTGS 347 Query: 389 ELSLLEESLKALPWDSLLENPQL-VLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTM 447 L L + A G + + Sbjct: 348 RGGYPAPWLAFERAAELTARGDVKAARLAAAAHRAWHAGLPQRARSLLTRLCSLTVSEET 407 Query: 448 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS 507 + +R + + G A A L + A E + G+ +R Sbjct: 408 RGQAELIRGSLELRSGKTGSARDELLSAAGWLLDRDRGRAVRALLRASEASYLAGDSSRF 467 Query: 508 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 567 LA+ +Q + R D L +G + A + + +L + Sbjct: 468 LAIARQAAALRRPDDPAATQLMFEYLAGIAATFRGRHREAADPLRRVLELAPSVGNPSVL 527 Query: 568 MHEFLVRIRA----------------------------------QLLWAWARLDEAEASA 593 + + + Q R A+A Sbjct: 528 VWAGVASLLLGDDVQALRLSTRAVEAARVRGAVSAVPQVLEFMIQTEIWMGRYASVTANA 587 Query: 594 RSGIEVL-SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 G+ + S QP Q LA L S GD + R + L G + Sbjct: 588 VEGLRLAQESGQPNSAGQHLAWLALTSAVEGDEETCRIRAGGAIELAGAHGLGVA-GALG 646 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR--NIARAQILLGEFEPAEIV 710 N G A AA LR TA+P+ N H + ++ A + GE E A Sbjct: 647 NWALAHLDLAAGRHAGAAKRLRATARPDGTNGHLVVRVMATPHLVEAAVRTGEHEQARAA 706 Query: 711 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 770 L L+ A S R L L +A+ DAL L ++ E Sbjct: 707 LRVLDRWAGSTRSPDRLALAARCHALLAA----PGEAEERFRDALDLHHQG----LCEFE 758 Query: 771 GEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPEL 830 +++ N P + L + + + Sbjct: 759 TARTQLLFGSVLRRNRRPGAAREHLHSALETFERSGARLWTEQARAELRGAGEAVRSRGH 818 Query: 831 IRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQ 888 LT +++Q+ ++ G +N ++A L ++ T++ H+RN++ KL + R + V+ Sbjct: 819 KAAEKLTAQQFQIARIVADGATNREVAARLYLSPRTVEHHLRNIFAKLDIRSRVELVR 876 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 52/445 (11%), Positives = 110/445 (24%), Gaps = 14/445 (3%) Query: 332 CQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAAG-----DALMLRDILLN--HAWSL 384 A+E+ G S + A A D ++ + Sbjct: 439 LLDRDRGRAVRALLRASEASYLAGDSSRFLAIARQAAALRRPDDPAATQLMFEYLAGIAA 498 Query: 385 FNHSELSLLEESLKALPW-DSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIR 443 + L+ + + NP +++ + L RA + Sbjct: 499 TFRGRHREAADPLRRVLELAPSVGNPSVLVWAGVASLLLGDDVQALRLSTRAVEAARVRG 558 Query: 444 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKG 502 + + Q I G A L G S + L +G Sbjct: 559 AVSAVPQVLEFMIQTEIWMGRYASVTANAVEGLRLAQESGQPNSAGQHLAWLALTSAVEG 618 Query: 503 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 562 + ++A H + + + A G A + + Sbjct: 619 DEETCRIRAGGAIELAGAHGLGVAGALGNWALAHLDLAAGRHAGAAKRLRATARPDGTNG 678 Query: 563 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 622 + + + A + ++A A+ R S + +L A+ +C Sbjct: 679 HLVVRVMATPHLVEAAV--RTGEHEQARAALRVLDRWAGSTRSPDRL---ALAARCHALL 733 Query: 623 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 682 A + +L G + + + AA + E + Sbjct: 734 AAPGEAEERFRDALDLHHQGLCEFETARTQLLFGSVLRRNRRPGAAREHLHSALETFERS 793 Query: 683 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 742 Q R R + + + + R+++D N + +LY Sbjct: 794 GARLWTEQARAELRGAGEAVRSRGHKAAEKLTAQQFQIARIVADGATNREVAARLYLSPR 853 Query: 743 RKSDAQRVLLDALKLANRTGFISHF 767 R + L + +R + Sbjct: 854 TVEHHLRNIFAKLDIRSRVELVRLL 878 >UniRef50_A4F5P5 Transcriptional regulator, LuxR family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F5P5_SACEN Length = 906 Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats. Identities = 117/908 (12%), Positives = 251/908 (27%), Gaps = 80/908 (8%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQAT 86 + + R ++ G GK+TL+ + S +++ E S L V Sbjct: 18 ARSARGRALVLRGETGIGKSTLLKYAQRRAAGMRLLSCSGLESESELAFSGLQHLVAPLL 77 Query: 87 NGHCAICETMAQKRQYA----------SLTSLFAQLFIELAEWHSPLYLVIDDYHLITNP 136 + + + A+ + A + S + + +PL +V+DD + Sbjct: 78 DEIDGLPPSQAEALRAALGMSELPVTEFVVSAAVCSLLSYSARGTPLLVVVDDAQWLDRA 137 Query: 137 VIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFD 196 + R E + L+ Q + LL + + A D Sbjct: 138 TLGALYFTARRIATEPIALLFGMGEAEQHEREARDLPTMLLT------GLSDEAADDLLD 191 Query: 197 CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLV 256 A + G AL+ + ++ + ++ Sbjct: 192 EL---GWNAPARDSLITATGGNPLALRELTRLGAPEQLVGDALLLGTVPLSERLRTAFI- 247 Query: 257 DEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGE 316 + ++ + R LL A+ + ++ + + +G + + Sbjct: 248 -QRMEGLPAKARALLLVVAVEETGRLGVVLGACARLGIDAGVLDSVLRGYDQLEITERWV 306 Query: 317 WFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHH--ALAAGDALMLR 374 F H L + + + + H A AE +G A H A L Sbjct: 307 RFR-HSLMRSAAYHKASLRM---RSKAHAAVAEELTDRGESDRASWHRAMAAVEPDEELA 362 Query: 375 DILLNHAWSLFNHSELSLLEESLKALP--WDSLLENPQLVLLQAWLMQSQHRYGEVNTLL 432 L A + + + L+ + A+ + L Sbjct: 363 TALERSADTAERRGGSAAVVSVLQRAAKLSTDPEGRTRRTASAAYAAWQSGQPDLARALT 422 Query: 433 ARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATS 492 D+ L + ++ +P A +E+ + Sbjct: 423 TEVMTAPTDM---HARVGLTRLLGLIDLDSNDPAVACAQFVRGAQEVAEHNPEEALTLLF 479 Query: 493 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQT------ 546 + + + G + + + ++ D A L +G Sbjct: 480 LAVDGGYLSGRIEDAGRAARLMTELDCGPDYRLLAERMCAALEGRLPLEGTTPRELLDAA 539 Query: 547 ----------------AWETQEKAFQLINEQHLEQLPMHEF---------LVRIRAQLLW 581 A + E L ++ A + Sbjct: 540 PALPTPDDEIRFLWVMAMSWLGPHQRQAREFGLAACRTFRLKGVASVLPVMLNWVADTEY 599 Query: 582 AWARLDEAEASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 640 + +A A + + + + LA+L + + RGD D R + Sbjct: 600 HLGLWRDGQAHAEEAVRLARDTGQRNRMADGLALLARFASVRGDWDGCRDHADAALETAL 659 Query: 641 NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF--ANNHFLQGQWRNIARAQ 698 + ++ + + G A A L AN+ ++ A Sbjct: 660 VLRN-RAAAAHVSWALGLADLARGRDADAYRRLSSIRSEGSPYANSKVAALVHPDLVEAA 718 Query: 699 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 758 + G + AE++L E+ E R + + + A L Sbjct: 719 VRCGHSDIAEVLLSEVREGCRGTTARWRKLHLHMCRALVEESGADFATATGAD---LGED 775 Query: 759 NRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFV 818 ++ GE + + RQ L + + ++ R + + Sbjct: 776 RPFDRARAALLHGEWLRRNRRQAEARWQLQQAAELFDSLGAAPWSERARGQLRAARGALL 835 Query: 819 ERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKL 878 + LT++E Q+ G+ +G +N++IA +L V+ T+ H+ L+ KL Sbjct: 836 R----------TADPAVLTRQEKQIAGMAATGMTNKEIAAQLSVSPRTVSHHLYKLFPKL 885 Query: 879 GVAHRQDA 886 G++ R Sbjct: 886 GISSRAQL 893 >UniRef50_C9N5T8 Transcriptional regulator, LuxR family n=2 Tax=Streptomyces RepID=C9N5T8_9ACTO Length = 987 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 142/956 (14%), Positives = 255/956 (26%), Gaps = 85/956 (8%) Query: 13 LDHTVVRERLLAKLSGA------NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDE 66 V R L L IT AG GK+ L+++ G L Sbjct: 40 GSPLVGRSVELGLLDTVIDRLGQGAPSFVDITGEAGIGKSRLMTELCLRARRRGVTVLRG 99 Query: 67 GDNQQER--FASYLIAAVQQATNGHCAICETMAQ--------------KRQYASLTSLFA 110 + ER A + Sbjct: 100 RAAEYERHLPFHPFADAFADLDDRPPHAPGLPDAVSRILGGGGAGAAPATADRFGLHRSV 159 Query: 111 QLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANL 170 + L + +DD H +P E + +RH ++V++R Q A Sbjct: 160 ARLLARLGRSGGLVVALDDVHWA-DPASLELLDHLVRHPVPGPVVLVVARRDRQTPTALT 218 Query: 171 RVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSAR 230 + + + A+Q + + ++ + G + + R Sbjct: 219 GTLTREADTEAVLRIALAPLAEQECVEGFAPDLPRDRAAHLYAAGEGNPLYFLSLLQAHR 278 Query: 231 QNTHSAH--KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAIL-RSMNDALITR 287 +N + +A + L+ L + A R L A+L +I Sbjct: 279 ENAAAHGTSPAAAGIGPGGLPTGLGALLLNELAPLTPAQRRTLEAIAVLGDHAVPPVIRG 338 Query: 288 VTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAA 347 TG + ++ + L R G HP+ + E+ H AA Sbjct: 339 ATGRTDAELDDDLDALARRDLVRSGPAGRPVLRHPVIRALVHDSTPARRRVEIH--HAAA 396 Query: 348 AESWMAQGFPSEAIHHALAAGDALM-----LRDILLNHAWSLFNHSELSLLEESLKALPW 402 AE E H + + + S L+ +L+ LP Sbjct: 397 AELAATGAPAVEQARHIEQSVTTWDPQAYSVLRQAAEQTAATAPTSCAHWLQAALRLLPD 456 Query: 403 --DSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAI 460 + E L+L +A + E LL + L A Sbjct: 457 TVEHGPERRDLMLRRARALGVAGGLLESRDLLHEVISTAGPDETG-VRTSAVVLCASTER 515 Query: 461 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ 520 + G EA L + L P R+ L + + +T AR Sbjct: 516 HLGRYPEAIALLRRELSRKPEPSPSDRVSIGLELSSSAPHNASYPQMRDEVARTLAEARA 575 Query: 521 HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL 580 + +L + +G + A +A L++ + L + Sbjct: 576 LGDEPWEAGALAVAAFGEAYEGNVAAAAAYAAQAAGLLDGLPDDDLTALCEPLGRLGWAE 635 Query: 581 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLA-MLIQCSLARGDLDNARSQLNRLENLL 639 R +AE A G+ + L L + L +AR + E++ Sbjct: 636 AFLGRFTDAERHADRGLGIARRGGQIYLLPLLLLCKAHVRIQTCRLPSARELADEAEDIA 695 Query: 640 GNGKYHSDWI----------------------------------------SNANKVRVIY 659 S A + Sbjct: 696 RGIGSSELLAFVMANKAQVCIAASAPGDPEAMAAAEEAVATMGPSDNWRASMAWCMLGYA 755 Query: 660 WQMTGDKAAAANWLRHTA---KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 716 GD A + + A + A + G+ + A E E Sbjct: 756 AMTGGDPHRARHAILRAAGGHDLGGLQPSMRPLFSELLVTAALSTGDVDSASAWSERARE 815 Query: 717 NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 776 A L L + QL G ++A +L +A+++ R+G + A Sbjct: 816 EAERLGLPVQRASAMRSAAQLASHHGATAEAATLLSEAVEVCARSGAVFWEARSLLLAAP 875 Query: 777 QLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPL 836 + + + R + + L Sbjct: 876 VMTAAGFATRGASMWEQ-----GRRLATGGGAGLLIGLSELTRPPAPSASSAVPTWLASL 930 Query: 837 TQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQ 892 T RE +V G++ G +N+ IA L ++ T++TH+ +++K GVA R + Sbjct: 931 TAREREVAGMVAEGLTNQAIATRLFLSPRTVETHVSRVFRKTGVATRAGLAALMAR 986 >UniRef50_UPI0001C30FA4 transcriptional regulator, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30FA4 Length = 943 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 148/927 (15%), Positives = 253/927 (27%), Gaps = 64/927 (6%) Query: 13 LDHTVVRERLLAKLSGA------NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDE 66 + + RE L L+GA L L+ +PAG GK+ L+ D G L Sbjct: 3 AESLLEREHELETLAGALDAALTGAGSLLLVEAPAGIGKSALLRAARRLARDRGIAQLVA 62 Query: 67 GDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYA-------SLTSLFAQLFIELAEW 119 ER + +A +G A E +A + + + Sbjct: 63 RGTPLERALPFGVAGRLLERSGERAPREPLAVPDDDGLGLIRTFAEAIVDLAWPAPASAA 122 Query: 120 HSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLR--VRDQLL 177 PL +V+DD P + + R + LV R + L +R Sbjct: 123 ARPLLVVVDDAQWADAPSLRVLVHLAARLDDLPVALVAGVRTGEPDAPSELLEALRGAGA 182 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 + Q L + G L+ + + Sbjct: 183 ARTLRPAPLGDAAIAQLVTRTLGEHASPELVRACANASGGNPFYLRELLAAVGSEAPRTP 242 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 + + + S L LV L + A +A+L E + Sbjct: 243 TADQLEQLVPDSVLRSVLVR--LARLGQAASRLASAAAVLGDGATLDAAATLAELE-PLA 299 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRC------------------QWELAAE 339 E+ +D HPL + L Sbjct: 300 AEQAADVLADAGVLDAGEPLRFSHPLIASALLADMGSFARARAHRRAAELVADAGPERVA 359 Query: 340 LPEIHRAAAESWMAQGFPSEAIHHALAAGDALMLRDILLNH-AWSLFNHSELSLLEESLK 398 + +H A A G +L A +LL E Sbjct: 360 MHLLHARPQRDPAVVTPLRRAAALARERGAPAESVRLLERALAEPPPAEQRPALLLELAD 419 Query: 399 ALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLAR----------------AEHEIKDI 442 A + P+ + L+ H G L+R Sbjct: 420 AGIRSGAADAPERIEEALELIDEPHARGAAQLALSRQLHHVGEFARAAALAGDARAALPP 479 Query: 443 REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG 502 + A A ++ G +++ + + L G ++L + G Sbjct: 480 GDPLQPRLLAAHVASAFLDPGLHVQSKAMMEPLLAAARRGDLPHDPGLLALLAMRMAEAG 539 Query: 503 ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 562 E ++ + SL + L L+ A + + Sbjct: 540 EPVATVRTLADAALAGGPLLDHDSHGTSLGFLAAALLWSDELELAERWLA--QAVAAARR 597 Query: 563 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 622 + RA + RL EA A A +E+ +L + L R Sbjct: 598 HAAVLPQFVACYFRACVHLQRGRLAEAVADAEHALEIHRYGWASSSAAAT-VLARAQLER 656 Query: 623 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 682 GDLD AR + E H + +VR+ G A A RHT + A Sbjct: 657 GDLDAAREAIAVAETGDERRPEHVLLLEARARVRLAAGDHAGALADALAAGRHTERYGAA 716 Query: 683 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 742 + ARA LG+ A +++E R L + Sbjct: 717 PSARAHEWRPIGARAAHALGDTRAARELVDEALALTRDDDAARIRGDVLRAAGVVT---- 772 Query: 743 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREI 802 + +L +A+ L R+ ++ + ++ + QR L Sbjct: 773 GGEEGLALLAEAVTLLERS----PALLSRAHALAEHGAALRRAGQRRAAREPLQRALELA 828 Query: 803 NQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEV 862 + + + L P + LT E ++ L G S QIA L + Sbjct: 829 DDAGAEPLVARVRDELRALGLRPRRAARSGAASLTPAERRIAELAADGLSTPQIAHHLTI 888 Query: 863 AATTIKTHIRNLYQKLGVAHRQDAVQH 889 T++TH+ +++ KL V R + Sbjct: 889 TKKTVETHLSHIFGKLDVRSRTELPAA 915 >UniRef50_A0JU98 Transcriptional regulator, LuxR family n=2 Tax=Arthrobacter RepID=A0JU98_ARTS2 Length = 894 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 143/887 (16%), Positives = 273/887 (30%), Gaps = 57/887 (6%) Query: 32 FRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCA 91 ALI AG GKT L ++ + E ++ F Y ++ + A Sbjct: 30 GPGALILGDAGIGKTALANE-----------VIFELGSRIRPFYVYAGPSLSEVPYAALA 78 Query: 92 ICETMAQKRQYASLTSLFAQLFIEL----AEWHSPLYLVIDDYHLITNPVIHESMRFFIR 147 T Q ++ L EL S LV++D + + + Sbjct: 79 PLLTALTPGQTDQPRAVLKALVTELNPEGLRDQSQAVLVVEDAQHLDDSSAAVIAQL--- 135 Query: 148 HQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAAE 207 E +V+L R P L + + L + + +EA + L SP+ + Sbjct: 136 AAAEAARVVLLCRPHPSPPPEVLSMWSEGLVDRFELQPLSKEEADELCTRVLGSPLVPSA 195 Query: 208 SSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEV---LDNVD 264 S+ + G L + A+ H ++ + + L+D V + ++ Sbjct: 196 SAVLFRSSGGNPMFLLELIAHAKTRGHLVQRNDTWVLLGEPGAATVRLMDLVRNQIMQLN 255 Query: 265 LATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLF 324 R L A+ ++ +++ R + ++E++ D PL Sbjct: 256 PDQRQALESVALAEAIPLSVLQRASD----SHAVDELKELQFIAISADPARHVRLAQPLI 311 Query: 325 GNFLRQRCQWELAAELPEIHRAAAESWMAQGF----PSEAIHHALAAGDALMLRDILLNH 380 G +RQ A I R + ++ + AL +G + DIL Sbjct: 312 GEVIRQ---LVPTARSVTIRRRIVDLMDSRPETLDGRLRHVTWALESGATVPDPDILEAA 368 Query: 381 --AWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHE 438 A LF + + +++ + + A L + Sbjct: 369 QLANRLFIPEYVERVVGAIRDPSLKLAAQ-----VELARAKLYGRDPMGACLCLEGVVEQ 423 Query: 439 IKDIREDTMHAEFNALRAQ--------VAINDGNPDEAERLAKLALEELPPGW-FYSRIV 489 D+R + A A V EA + A L +R+ Sbjct: 424 ATDLRTVRQASMLAAQLAAGKRNGPEAVLRAADAWAEAVSRLEEARPGLDAKDFETARLG 483 Query: 490 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 549 + + E G + +QQ + D L + +E L G +A + Sbjct: 484 SRLLALEGYQAAGRHVEAEPELQQ---IWESTDDDESRLLAGTLLAESLALTGRAVSAIQ 540 Query: 550 TQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 609 ++ + +L EF++R L D E ++ I S+ Sbjct: 541 IIMDVEDILADSGDRRLEYAEFVMRRYLLALLHAGEFDVLEEYLQNHIAQASNSLIYFGG 600 Query: 610 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 669 L RG + A +L++ +L D + + A Sbjct: 601 MLHLAAGTADLRRGAIGAALPKLSQAVEVLRLSDAGGDLPDALAAAAYAASILNRTETAK 660 Query: 670 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 729 N + A + L GQ +A LG + + A S L ++ Sbjct: 661 VNADAYEALLSDHRHASLLGQAYTVAALAERLGLQTAVSKLTALADAAAASGFLSYEVEI 720 Query: 730 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPE 789 L+L + A + + + ++ + L Sbjct: 721 LSLVLRLGDLTVVPRLAATAEGCEGRSAEFLAAYCRALAAKDVNRLVEMSDAAARDGLDL 780 Query: 790 LEQHRAQRILREINQHHRHKFAHFDENFVERL------LNHPEVPELIRTSPLTQREWQV 843 A + LR + + V++ LT+RE ++ Sbjct: 781 AAAECAAQALRILETRGDKPRQFEAQKLVKQRNAALTKTGSSAAEIPPDLHKLTRREQEI 840 Query: 844 LGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHA 890 L+ +G SN +IA +L ++ T++ H+ ++ KLG++HR+D A Sbjct: 841 AALVQAGASNREIALQLGLSLRTVEGHLYRMFAKLGISHREDLASVA 887 >UniRef50_Q98DV9 Transcriptional regulatory n=1 Tax=Mesorhizobium loti RepID=Q98DV9_RHILO Length = 862 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 130/879 (14%), Positives = 259/879 (29%), Gaps = 44/879 (5%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQAT 86 + R+ ++ AG GK+ L+ + G D ++ + + + Sbjct: 19 AANGRGRVVALSGEAGAGKSALVEAFVGGVADGTRIFRSACEDLSIPDPLGPLYDLAREA 78 Query: 87 NGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFI 146 Q ++ LF+ P LVI+D H + + Sbjct: 79 QWAMPQAIDARQGQRVP----LFSDALGVFEARTQPTLLVIEDLHWADDATLDFVRFLGR 134 Query: 147 RHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLSSPIEAA 206 R ++ L + +R +RVR L EI + + L + Sbjct: 135 RIANTHILLALTARTD--RSEGQMRVRRALGEIPAGNVVRIDVPLLSEAAVLLLANAAGR 192 Query: 207 ESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLVDEVLDNVDLA 266 + I +G A + + + + T A +A + + Sbjct: 193 DGDAIYRATAGNAFFVTELLCADNEMTPPASVRDAVVARA--------------ERLSAG 238 Query: 267 TRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFCYHPLFGN 326 R L ++ DA + +L E GL D + H + Sbjct: 239 ARSMLDAVSVFPRRADAWALQGLCGVAAAGQLAECVSNGLL---DDLGDGYAFRHEIARR 295 Query: 327 FLRQRCQWELAAELPEIHRAAAESWMAQG--FPSEAIHHALAAGDALMLRDILLNHAWSL 384 + ++ A + + G + +HHA+ A + +R+ A Sbjct: 296 AIEMMLTTSS---RRLFNQRALSALLENGGVATARLVHHAVEAHNLQAVREFAPIAAREA 352 Query: 385 FNHSELSLLEE----SLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIK 440 +L+ E L A+ R E RA + Sbjct: 353 SRVGAHRDAAGYYEVALRQADTLPQDERAGLYEHYAFECHLIARIDEAIKAQERARELQQ 412 Query: 441 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF-YSRIVATSVLGEVLH 499 + + ++ A G+ A+ A+ L +A S L ++ Sbjct: 413 ALGNRLKEGDSLRWLSRFAYLLGDRRAADMFGAQAVALLETVPASAELAMAYSNLSQLAM 472 Query: 500 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 559 L +L+L + ++A + + +L L ++ ++ ++ Sbjct: 473 LAERLDETLSLGARAIELAERLNRPEVVCHALNNVGAAEQWLD-LGSSRLHLARSLEIAL 531 Query: 560 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQC 618 EQ+ ++ F ++ +A++ GI+ + + + + Q Sbjct: 532 EQNFQEHAARAFTNCACGEM--NQLGYSQAQSFLDRGIDYCVENDLATWRDYMRGVRAQL 589 Query: 619 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 678 + G D+A +++ N + + A GD +A Sbjct: 590 LVRNGLWDDA---AAEALDVIANDRATALVRYPALVALSRLRVRRGDPSAEPLLAEMKRF 646 Query: 679 PEFANNHFLQGQWRNIARAQILLGEFEPAEIV-LEELNENARSLRLMSDLNRNLLLLNQL 737 E + + LGE + E + L +L E R + + + Sbjct: 647 LEKGAELQRLLPYAAVMAELAWLGEADKDEALRLIDLAEGMSPTRAVFAELASWRQMLAP 706 Query: 738 YWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQR 797 G S L R + ++ + Q Sbjct: 707 DADPGDTSAMAAPYRMLLAGDWRAAAAAWAELDAPYERALALAQGDEAAQRAALEVLEQL 766 Query: 798 ILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIA 857 R + H R N V R+ P ++ LTQR+ +VL LI G SN++IA Sbjct: 767 GARPVASHVRD---IMRRNGVIRIARGPRRTTRANSAGLTQRQMEVLQLIERGLSNKRIA 823 Query: 858 GELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKM 896 L ++ T+ H+ + KL R +A A+ + Sbjct: 824 EHLAISPKTVDHHVSAVLGKLDAVSRGEASAAARASGLI 862 >UniRef50_UPI0001C32364 transcriptional activator domain protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C32364 Length = 1009 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 142/839 (16%), Positives = 261/839 (31%), Gaps = 26/839 (3%) Query: 2 LIPSKLSRPVRLDHTVVRERLLAKLSGAN-NFRLALITSPAGYGKTTLISQWAAGK-NDI 59 LI KL+ P V R RL L R+ ++++ AG GKTT ++ A + Sbjct: 14 LIQRKLAPPPPPAPLVERPRLEQLLEALFERHRVVVVSATAGAGKTTAVAAAARRLTWPL 73 Query: 60 GWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEW 119 W S+D D R +YL AA+ + + + A + A Sbjct: 74 AWLSVDRTDAAPGRLVTYLEAALARTRPELAGLASEALAAG----IPHAEAVGLLIEAAG 129 Query: 120 HSPLYLVIDDYHLI-TNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLE 178 +PL +V+DD + P + +R+ P + + ++SR ++ + Sbjct: 130 DAPLLIVLDDLERLGDAPEALAVIEALLRYAPPAVHVALISRRDVPSVLS-VPSGHVSAT 188 Query: 179 IGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHK 238 I LAFT EA + + +++ + GW T + A + + Sbjct: 189 ISEGDLAFTVTEAAEALELLGER---ETDAAEVVAATGGWVTGVLFEAWRSAAHVAG--- 242 Query: 239 SARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRL 298 G A L YL ++L+ +D A R FL+ +++L + A T + + L Sbjct: 243 -----LGGEADPLDGYLSSQLLEQLDPAARDFLVATSVLEEVTVARATALGQPAAAERVL 297 Query: 299 EEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPS 358 R + G HP F ++L R + + E+ A +G Sbjct: 298 --ALRAAHLPVVWGEGGTSMRCHPRFRDYLLARLERRGPDAVREVRVAHGRLLAREGHHE 355 Query: 359 EAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 EA L AG + + + ++ E L AL + QL + + L Sbjct: 356 EATEVLLRAGADEQALTSAEQAIFPVIERLDGAVAERWLTALADVAPSGATQLTIAELAL 415 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 + Y + + + R L A + G D+A + A Sbjct: 416 SLTGDDYRRGVRVADQLVELDERERLAHASDRAAGLMASLYAGVGRLDDAHAVLDAASGG 475 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 538 L + + + ++ + + D A S + Sbjct: 476 LGASTVRYMLRMYEGGPAQPRPEPGGEEADGVLSYADYFCGRLDKLGEAPLSRWAYAVAR 535 Query: 539 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 598 Q + A +A +L + V ++L RL++A A G Sbjct: 536 PWQIAARAALGHTAEALELYEAAQDAGVMTVSLAVCPGPEVLMDAGRLEQARALIAHGRR 595 Query: 599 VLSSYQPQQQLQCLAMLI--QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 656 + + ++ D + AR+ L +LE L + I N Sbjct: 596 LARATGALDLECVNRLMEGKLALRLERDPEAARAVLEQLERDLEPHAW-PFLIGPINAWL 654 Query: 657 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN--IARAQILLGEFEPAEIVLEEL 714 + GD AA L + + L+ +A AQ G+ E A+ + Sbjct: 655 GAALLLQGDDVAALARLSRAVEVLVDADLILELPTAAGYLAEAQWRAGDEEAADRAADLA 714 Query: 715 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 774 + + L L + L + + L A + G + Sbjct: 715 LDASHRLGSNHRLLQALTDYPAVVSRRIDAEQGADSAWHELGRALIAQGAGGLSVIGSVV 774 Query: 775 AQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRT 833 + L + R + + D + + L + R+ Sbjct: 775 ELREFGEPALAIAGATVRARIAKSYELVAFLIVRGGDGVDRDELLDALFDGRADDSARS 833 >UniRef50_UPI0001C31A5A ATP-dependent transcriptional regulator, MalT- like, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31A5A Length = 947 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 125/924 (13%), Positives = 250/924 (27%), Gaps = 78/924 (8%) Query: 20 ERLLAKLSGANNFRLALITSPAGYGKTTLISQWAAGKND-IGWYSLDEGDNQQERFASYL 78 E + + ++T PAG GKTTL+ A+ + + D + + + Sbjct: 27 EARVRAAVERGVGSVLVVTGPAGAGKTTLLGALASSAAPRLRVLNATGADVECDLPFGVV 86 Query: 79 IAAVQQATNGHCAICETMAQKRQYASLTSLFAQ-----------------LFIELAEWHS 121 V++ A + +++ +L + Sbjct: 87 RQLVERPVLALPAAAQAELLAGPASAVRALLNGPVDAPVDSAAAIAHGLYWLLARLTDQQ 146 Query: 122 PLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGS 181 P+ +++DD H + R L LVV +R+ A R+ Sbjct: 147 PVCVLVDDAHWCDAESMDALTYVARRADGHPLVLVVATRDDEPDAHAWSRLHAIESTAVL 206 Query: 182 QQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSAR 241 + + + + + +++P A +S +G L + + R + + Sbjct: 207 RPAPLSAEASARLVSSFMAAPASAPFASACHRLTAGNPRLLVELLATCRDMAIAPDAAGA 266 Query: 242 RLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILR--SMNDALITRVTGEENGQMRLE 299 A +V E + + A+L M+D + + + Sbjct: 267 AAIATIAPERLGTMVLERIARLGDHALALSRAVAVLEHGRMSDTAAVALLDAVDAEHAAR 326 Query: 300 EIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSE 359 + L L + HPL G + + +AE HR AA + + Sbjct: 327 RLVDGALLLDEL----PLRFVHPLTGAIVLGQL---GSAERDGAHRRAAAVLASHDRDAA 379 Query: 360 AIHHAL-AAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWL 418 A+H + L + A + + L + L L Sbjct: 380 ALHLLRCEPAGESWAAETLRDAAHAALRRGTPAAAVRLLDRALAEGGQGTAIRAELAGAL 439 Query: 419 MQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 478 + + L A +D + + A A A G+ R + AL++ Sbjct: 440 LAAGD--PRAVEELHWAVRACRD--DPSRRAALVAQLALAQFTTGDVAACTRTLRAALDD 495 Query: 479 LPPGWFYSRIVATSVLGEVLHCKGELTRSLALM--------------------------- 511 L P + ++ A Sbjct: 496 LAPLDDGGGVGGIEIVATAALLPQGDQTLRAAAVLRARSMTGDPRLGAIAAIDRVCRGEP 555 Query: 512 -------QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 564 + L + A + E AF + E Sbjct: 556 ASETTPGAAARLRELVGSAGGDVAPAFHVLVWALACYDEVDVASDALEHAFDVAREHGSR 615 Query: 565 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 624 +RA W L A + + L +C LARG+ Sbjct: 616 LRY--GMACYLRAWTRWCRGDLLGVLADVDETLAFAAEGGAIAVPNMLWEQAECRLARGN 673 Query: 625 LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 684 + + L+ + + ++ + + A L + Sbjct: 674 VAGCAAALDAGFAAVDSTRWELAGAWLRHGRAGQLLRAGEPVGALREALAAGELFSSMDM 733 Query: 685 H--FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 742 + RA + +GE + A + + A + L L + Sbjct: 734 PSPAVVDWRGRAVRAAVAVGELDRARAIAADGVTRAEVIGTPRTLALAGLADALTHDGDA 793 Query: 743 RKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREI 802 R L+ A + + +L + ++ P + ++ + Sbjct: 794 RVER--------LQAAALHAAAGPSPLVRAEVLLELGRALRHQRRPSDARTPLRQAIDLT 845 Query: 803 NQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEV 862 A + +E LT RE ++ L G +N QIA L + Sbjct: 846 RAAGATALAAEALSELEATGARRRREPAWGVESLTPREHELAQLAARGLTNTQIAERLFI 905 Query: 863 AATTIKTHIRNLYQKLGVAHRQDA 886 T++TH+ + +KL + RQ+ Sbjct: 906 TRKTVETHMSAVLRKLEIGSRQEL 929 >UniRef50_C7MVE7 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MVE7_SACVD Length = 923 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 119/916 (12%), Positives = 242/916 (26%), Gaps = 77/916 (8%) Query: 29 ANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQA--- 85 ++ G GKTTL++ + + + + + ++ Sbjct: 32 GRRGTGMVVVGAPGTGKTTLLNALVEHAEGFQVLWAEGSAAESDVRFAGVEQLLRPLESL 91 Query: 86 ----------TNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITN 135 + + + + LA P+ +D HL+ + Sbjct: 92 VSLLPDDRGRALRPVWGLPADDEGQVGSLAVPAAVSALLGLAARRQPVLCCVDSAHLLDS 151 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRNLPQLGI-ANLRVRDQLLEIGSQQLAFTHQEAKQF 194 + R + V + V +L + + A Sbjct: 152 ASLSALAFAARRAHHAGVVFVFAVDCTADTEVDTETSVWGELPRLRLG--RLDDEAAHAL 209 Query: 195 FDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDY 254 RL + + + + D G AL +A S + Sbjct: 210 LRDRLGASLPHDLADSLLDVGHGNPLALVELAESLTPEHLCGRAAPPSSPPPEGRLCRT- 268 Query: 255 LVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQRMDDT 314 + L + R + + I +++ L RV L E R GL + D Sbjct: 269 -LGHRLSALSEGAREVVALAGISEGLDEQLTCRVLPHHRST--LAEAVRSGLVVLDGDTV 325 Query: 315 GEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALA---AGDAL 371 P ++ + H AE+ A G A+ H A A D Sbjct: 326 RTAADTVPS------ALLAALTPQDIVQAHHRMAEAAEAVGDRDRAVWHRAAIAMAPDPA 379 Query: 372 MLRDILL-NHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQSQHRYGEVNT 430 ++ D+ + A E + ++ A + R T Sbjct: 380 LVADLDDIAERARAAAAHATAAAASERAAALTSDTKERARRLVAAATDHWASGRPQRART 439 Query: 431 LLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVA 490 L A + + A + L ++ + G+P A +L A Sbjct: 440 ALRLAAPL----SDSVLGARVSRLAGEIELRRGDPSVAATKLISTARQLASTHRTLAASA 495 Query: 491 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 550 + GE G+ R + + + + + +G A Sbjct: 496 LMLAGEASFVAGDNARYCLTAKDAALLCGPEEWPATRVVREHFTAMSATFRGEHSAAAAP 555 Query: 551 QEKAFQLINEQHLEQLPMHE----------------------------------FLVRIR 576 +L + + Sbjct: 556 LRSLVELGETTPDPTAKTLASQAAFTLGDAERSRDLALQAVVCARARGDESGVPWALVYA 615 Query: 577 AQLLWAWARLDEAEASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRL 635 A +L A +A G++V S + + +L + +GD + A +L Sbjct: 616 ALSALLSGQLSAASTTALEGLQVARSLGQSNSAVDHVTVLAMLAALQGDEETALQRLQAA 675 Query: 636 ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 695 L + A + R T + Sbjct: 676 NTELAERGLGRPSALATWAAACVDLAHDRPAEAFDRFRRMTVGRSRHCVPLRVMAVPHFV 735 Query: 696 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 755 A + GE E A L A + + + L Q G +AQ +A+ Sbjct: 736 EAAVRCGEKEVARRSLVTFEHWANTTGGTARVALAHRCHALLAEQDG---EAQERFTEAV 792 Query: 756 KLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE 815 +L ++ + P+ + + ++ + + Sbjct: 793 RLHREADAPYDLA----VTQLLYASHLRRSRRPKQARELLREAVQLFDDLGATHWVERAS 848 Query: 816 NFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLY 875 + R HP + + L+ ++ ++ L+ G +N++IA +L ++ T+ H+RN++ Sbjct: 849 QEL-RACGHPGRGKPHLSRGLSPQQERIAQLVADGATNKEIATQLFISHRTVDHHLRNIF 907 Query: 876 QKLGVAHRQDAVQHAQ 891 KL V R + Sbjct: 908 AKLDVRSRVQLAALFR 923 >UniRef50_A0QU90 Tetratricopeptide repeat family protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QU90_MYCS2 Length = 872 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 146/899 (16%), Positives = 274/899 (30%), Gaps = 58/899 (6%) Query: 15 HTVVRERLLAKLSGANN--FRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQE 72 V R+ L + + A R ++ P+G GKT L A G+ Sbjct: 5 PFVGRDDELREAAEALRDSSRGVVLAGPSGVGKTALARALAGQLETEGYT---------- 54 Query: 73 RFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHL 132 Y++ A T+ + L A + +V+DD Sbjct: 55 --IRYVLGTETGQAVPFGAFHHTLELSDAHEPTVMLAAA--HHTLSADPNVLIVVDDAQY 110 Query: 133 ITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAK 192 + ++ H L + + S + L L+ + + F+ + Sbjct: 111 LDPLSAL-LVQQLAVHGSIKLIVTMRSGATTSDAVTALWKEHLLVRLDVEP--FSRAQTA 167 Query: 193 QFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLS 252 + L ++ + + SG L+ + +A + R N Sbjct: 168 EVASTVLGGEVDEHAVAELHRYSSGSPMFLRGVLTAAMGDGVLVQAHGRWRLRGNLRPSP 227 Query: 253 DY--LVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLFLQR 310 D L+ ++ + A ++ ++ + G + + ER+G Sbjct: 228 DLYELIASRVETLSAEELDVAEVVATADMLDWHVLLAICGPD----AVARAERRGAIQVT 283 Query: 311 MDDTGEWFCY-HPLFGNFLRQRCQWELAAELPEI--------HRAAAESWMAQGFPSEAI 361 + HP+ G +R RC ++ + R A ++ + Sbjct: 284 SAGSHAVVQPGHPIIGEVVRSRCPVSRTRQINTLVAEHLSAQLRVATDASAVDVRTRIQL 343 Query: 362 HHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 + ++ D++ A S S+L L E+ + N LVL A + Sbjct: 344 ARFMTRAESPPDTDLVTEAAASAVTMSDLVLGEQLARFAVEHGAGVNAALVL--ADAISW 401 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQ-VAINDGNPDEAERLAKLALEELP 480 Q R E + LLAR D +D + RA + G P+ A + + + Sbjct: 402 QGRGDEADALLAR---YPPDGEDDLTVTRWGCQRAANLFFVCGRPEPAWEVLAKTRDAVG 458 Query: 481 PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 540 G + A V + +M +W + + L Sbjct: 459 SGKLTGLVTAMEVAFTYFSADMAGAAAAGSAALATEMM-----PAATVWVALATAGALAK 513 Query: 541 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 600 G + L + A L D+A+ + Sbjct: 514 SGRFSEVAAVVRTGEHAASRCESGPHRYSLPLAEVLAGTL--AGEFDDAQRACDR-YAAA 570 Query: 601 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 660 SS PQ + A+ + LARG L++A QL + K W Sbjct: 571 SSDIPQADVMVTALAGRMKLARGQLEDACEQLQAAVWSMA-AKLPPGWPMLVASWLAQAE 629 Query: 661 QMTGDKAAAANWLRHTAKPEFANNHFLQGQW-RNIARAQILLGEFEPAEIVLEELNENAR 719 G+ AAA L + A GE A+ +NA Sbjct: 630 GARGNAEAAAVALTKAEAEVGPQVEVFAPELELARAWRAAAAGETSRAQHHAVLAAQNAH 689 Query: 720 SLRLMSDLNRNLLLLNQLYWQAGR------KSDAQRVLLDALKLANRTGFISHFVIEGEA 773 + + + L + + ++ L +A+ L + +G H Sbjct: 690 AAGMTAVELTALHTSTRFGDRTVDARIQQLPTELDCPLGEAIALHS-SGLAGHDGNRLVT 748 Query: 774 MAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLN-HPEVPELIR 832 A + ++ + + H ++ R + + + + R P + Sbjct: 749 AADRFERIGAMVLAGDAAAHASREFGRRGERGNELEASTRAHWLASRCGAVTPALRCAAD 808 Query: 833 TSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQ 891 PLT REW++ L+ SG SN Q+A L ++ T+ H+ ++ KLGVA R + + Sbjct: 809 PLPLTPREWEIANLVSSGLSNRQVADRLCLSVRTVDGHLYRMFAKLGVADRDQLAKLIR 867 >UniRef50_C6WIE2 Transcriptional regulator, LuxR family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WIE2_ACTMD Length = 956 Score = 173 bits (438), Expect = 4e-41, Method: Composition-based stats. Identities = 134/947 (14%), Positives = 239/947 (25%), Gaps = 96/947 (10%) Query: 23 LAKLSGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQERFASYLI--- 79 +A+ S + ++ + G GKT L+ + A + + + + ER + I Sbjct: 21 VARASATGSPQVVEVHGEPGIGKTALLDELARIALERSFEVVSGRAGEYERGVPFGIVAE 80 Query: 80 -----------AAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSPLYLVID 128 A+ + A E + + + S L +++D Sbjct: 81 ALGGLKPDDTTQALLDSLTPEGAPGEAGVGGGAHRYRLHRAVRRTLGRRARPSGLVVLLD 140 Query: 129 DYHLITNPVIHESMRFFIRHQPENLTLVVLSR-NLPQLGIANLRVRDQLLEIGSQQLAFT 187 D H + + L + V R + G+ R + + Sbjct: 141 DVHWADEDSLELVESLLLDLPEAPLVVAVAYRGHQVPAGLPAALGRTRAEVVRLAPGPLV 200 Query: 188 HQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGIN 247 ++ + A + G L + A Sbjct: 201 ERDVAVLL-----PDVPARRRELLTRVSGGNPLYL-DALARLDERALGALDREHTDPEDL 254 Query: 248 ASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEEIERQGLF 307 L L E+ R + + L+ V G ++ E L Sbjct: 255 PRRLGALLTGELRGLAPDRLRVAHAAAVAGDTAEVGLLVAVAGMPEDEVFAAVDELTELG 314 Query: 308 LQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG-FPSEAIHHALA 366 + R F HPL Q A HR A E A G + HH Sbjct: 315 VLRPVGGRFRFR-HPLVRAAAYQSA---GPAWRIGAHRRAEEHLRAHGGSLALRAHHTSR 370 Query: 367 AGDALMLRDILLNHAWSLFNHSELSLLEESLK---ALPWDSLLENPQLVLLQAWLMQSQH 423 A + L A + S + L+ L + + + +L +L A ++ Sbjct: 371 AARRDDVAVGTLVDAAVVAVDSAPASAAGWLRTALELLPEGHVRSAELRVLLARVVGLAE 430 Query: 424 RYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW 483 R E +L E A G DE++ L + L Sbjct: 431 RLPESRRILHGVLEAAAGPG----RREAVRFSAVADRLLGRFDESKALLEAELA--GGRE 484 Query: 484 FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGF 543 R L +G L ++ R+ + + G Sbjct: 485 AAGRGALLVELAATEVLRGATGVCSELAREAVVDGRERGDRGQEAAASMLVGLTALQDGD 544 Query: 544 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 603 + A A +L++ L H ++ L +AE R G EV + Sbjct: 545 AEAARGWARAAVRLVDGLPDTALRDHLHVLPPLGWLELRLGERGDAERHLRRGEEVALAT 604 Query: 604 Q-----------------------------------------PQQQLQCLAMLIQCSLAR 622 P+ +A I+ L R Sbjct: 605 GRAHVRPYLRVVVADVAASGGELARAVEVAEEAHEAAEGLGSPELAAMAVAARIEPVLWR 664 Query: 623 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKA--------------- 667 A +D + VR + G+ A Sbjct: 665 RGPTAALDLAEEGRPRSAWWAQEADAGIASVLVRAGELRRAGELAGRYVAGGRGGGGGGG 724 Query: 668 -----AAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR 722 +A + G + A + E A L Sbjct: 725 RGGGSGGGGGSGSGGGVGRVRGLAAVRWCGVLAVCRAGGGAWNEALGLAEHAVRLAEELG 784 Query: 723 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLI 782 + L + GR +++ A++ G + + A L Sbjct: 785 IAFQRGEAALARAGVLAACGRLAESVDEAGVAVEWFGEAGAPLQVALGHDRAAASLAAAG 844 Query: 783 QLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQ 842 + + R + L+ RE + Sbjct: 845 DFEAARAAYGRAKSGYSACGALWLSGRVRAGESRLGARAPRPRRPEAVGTVESLSGRERE 904 Query: 843 VLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQH 889 V L+ G +N +IA L ++A T++ H+ ++ KLGV R VQ Sbjct: 905 VARLVSEGLTNREIAERLSLSAKTVEAHLARVFTKLGVRSRVGVVQR 951 >UniRef50_B6A1Y1 Transcriptional regulator, LuxR family n=2 Tax=Rhizobium leguminosarum RepID=B6A1Y1_RHILW Length = 959 Score = 172 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 152/952 (15%), Positives = 281/952 (29%), Gaps = 114/952 (11%) Query: 29 ANNFRLALITSPAGYGKTTLISQWAAGKNDIG--------------------------WY 62 R L+ + AG GK+ L+ ++A + Sbjct: 29 GGRQRSILLGAEAGGGKSRLVEEFADRLSGCALILKGGCIEQRESALPYAPVTAVLHELV 88 Query: 63 SLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKRQYASLTSLFAQLFIELAEWHSP 122 L G + + + E A L +LF ELA P Sbjct: 89 QLRGGTAARSLVGAASARELAWLLPEFGETSERFDAGIARARLFEALRKLFEELAR-EMP 147 Query: 123 LYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQ 182 L +V++D H R + + L+V R G LR L + Sbjct: 148 LVVVVEDIHWADQATCDLLRFLTTRLKKSRMMLIVTYRPEETSGSNALRTTIADLSLSEG 207 Query: 183 Q-----LAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E + L P A + + G + + ++ Sbjct: 208 AEMLKLPRLKRAEVAAQLEGLLGRPPTPAVINEVHARCCGIPLFTEALIDAS-------- 259 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAI-LRSMNDALITRVTGEENGQM 296 L L+DYL+ V + +T L A+ + AL+ V + + + Sbjct: 260 ---GSLRTDFPGSLNDYLLKGV-REIPASTAGLLKVMALGGPHIAHALLRSVADKSDLE- 314 Query: 297 RLEEIERQGLFLQRMDDTGEWFCY-HPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQG 355 L E+ + + + G+ + + H L +R +A E IHRA AE Sbjct: 315 -LAELLKPAILTGILVPDGDGYAFRHALIHEAVRGDL---IAGERMAIHRAYAEVLERGP 370 Query: 356 FPSEAIHHALA-------AGDALMLRDI----LLNHAWSLFNHSELSLLEESLKALP--- 401 PS + H++A AG A + A + ++ +L+ L A P Sbjct: 371 LPSYRVWHSVALARHWHGAGQAEPCLRWAWQSAVEAAATFAYADQMEMLKLVLAAWPDVD 430 Query: 402 ---WDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQV 458 ++ +++ L A + + RA E+ R+ A RA + Sbjct: 431 HAADLIGADHCRVLELAADAACWAAEAEQGLAFVERALAEVDAERDGEQLAALLLQRAVM 490 Query: 459 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 518 + P E L + + P R L +GE R+ L + + ++ Sbjct: 491 RQHTLTPGEIADLERALDHAVAPT--RLRADGLGQFSRALILRGEFDRARLLGDELKDLS 548 Query: 519 RQHDVWHYALWSLIQQSEILFAQGF--LQTAWETQEKAFQLI------------------ 558 + D Y + +LI + + A G + W ++A Q Sbjct: 549 ERLDDEEYRIEALIVAASVDMAAGNSRIDAFWNVAKRAGQASIGRVEVLAGAALLQALLE 608 Query: 559 -----------------NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 601 + + + + + L A R+ EA + + Sbjct: 609 TGDYAQIIDIGPAIFAQTVEFGQARYIGAIVGSPLCRALLAVGRVSEAVETCERMAAL-- 666 Query: 602 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 661 P + + +L GD D + + L + +N + + Sbjct: 667 DPLPLGLVHVFECQAEIALVLGDSDRVAAAASASRALPPGPQVAGRMTANLLRFDLESTA 726 Query: 662 MTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 721 + GD +A +R + + R I + A+ + + L Sbjct: 727 LAGDMDQSAILIRSASTQLEKQGGVSWPLLASAMRVAIDTNRKDVAQQLAD-LAARTPCR 785 Query: 722 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQL 781 ++ R + + L+ + G A ++ Sbjct: 786 NVVEQAERLTVSAEMSRATVSDLDAWEAAAQSWADLSQPFRQAYALMQAGSAAVNAGKRA 845 Query: 782 IQLNTLPELEQHRAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREW 841 + R + ++ L E LT RE+ Sbjct: 846 RGADHFGRAADLAHSIGARLL----ANQIETLAAKARIDLRGGKEGSTPKAKLGLTDREF 901 Query: 842 QVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQL 893 +VL L+ +G SN +IA L +++ T H+ N+ KL V R A A +L Sbjct: 902 EVLRLVAAGQSNREIADNLFISSKTASVHVSNILSKLAVPSRGAAAAMAHRL 953 >UniRef50_Q8CJK8 Putative transcriptional regulator n=2 Tax=Streptomyces RepID=Q8CJK8_STRCO Length = 908 Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats. Identities = 138/919 (15%), Positives = 241/919 (26%), Gaps = 91/919 (9%) Query: 29 ANNFRLALITSPAGYGKTTLISQW--AAGKNDIGWYSLDEGDNQQERFASYLIAAVQQAT 86 A L+ G GK++++ + A + + +Q + L +Q Sbjct: 20 AGKGGALLVRGDPGVGKSSVLRTFGSHASDQGVRVLRTSGVETEQWLPFAALHLLLQPVL 79 Query: 87 NGHCAICET----------MAQKRQYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNP 136 G + + + + A PL L++DD + + Sbjct: 80 GGAETLPAPYRKALGGAFGASDGEPEIYRVGMAVLELLADAADRQPLLLLVDDLQWV-DS 138 Query: 137 VIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFD 196 + + F R + L++ + G L +L+ A Sbjct: 139 SSRDVLGFVARRTRDLPILMIGAARTSSPGTYTLGTHAELVLEPLSP------SAAAELL 192 Query: 197 CRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHLSDYLV 256 + + A +RI +G AL + +A+ + A Sbjct: 193 DADAPGLADAVRARILQRAAGNPLALVELPRAAQGISPPLDDLPLTQRLETAFASRT--- 249 Query: 257 DEVLDNVDLATRHFLLKSAILRSMND----ALITRVTGEENGQMRLEEIERQGLFLQRMD 312 D++ R FLL A + + +R+ G E L+E GL + Sbjct: 250 ----DSLTRECRTFLLVLAAEPTAPLNQLLDVASRLAGSEVTVYALQEAVDAGLVVLTGR 305 Query: 313 DTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFPSEAIHHALAA--GDA 370 HPL + + R A+ HRA AE+ G P + H AA G Sbjct: 306 TPEFR---HPLMRSAIYTRATV---ADRLSTHRALAETLE--GSPGRRLVHLAAATLGPD 357 Query: 371 LMLRDILLNHAWSLFNHSELSLLEESLKALPW--DSLLENPQLVLLQAWLMQSQHRYGEV 428 L L A +L+ +L+ L++ A L + + Sbjct: 358 DELAGQLERFADDAQKRGQLAAAVPALRQAGELVHDPRRQTGLLVRAAELASEINDRVQA 417 Query: 429 NTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRI 488 LL RA+ T A + + A P + A S Sbjct: 418 QILLNRADLA---EPGPTERARLMLVSDKAAFEPDEPQRRIQDMIDAAAGAFDVGSTSVA 474 Query: 489 VATSVLGEVLHCKGELTRSLALMQQTE------------------------------QMA 518 + + E Sbjct: 475 ENLLWRAAARCFFQDGDARVRAQAAAELDRWKPDPDAPHVLTVRAYTEPYRRGTDLIARL 534 Query: 519 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 578 + L A G + A +A + Q L Sbjct: 535 EKLRPDREDGRLLHYLGSGSMAIGDVGRATRYLAQAASVWRSQGRLGLLARSLAGS---W 591 Query: 579 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL-AMLIQCSLARGDLDNARSQLNRLEN 637 +L +A + GI + L A ++ RG+ + A + L Sbjct: 592 PRLYLGQLAQAREESAEGIALAEETGEWIVWLGLKATSALTAVLRGEREAAARSVRELRA 651 Query: 638 LLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR--NIA 695 A +V + A + L + H ++ Sbjct: 652 H-SLFPVMPFASVMAQQVEGLLALFDSRAVEAYDALARAFDKTDPHYHSTSRWLLVPDLV 710 Query: 696 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 755 A G E A +L EL E A L + + D L AL Sbjct: 711 DAAAAAGRNEQARELLVELPELADRLPSEM-MIVARTYSTAVLAPDDTAEDCYDSALSAL 769 Query: 756 KLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDE 815 + G + +Q R + L E ++ +A Sbjct: 770 PDTWPLARARLHLQHGRRLRRQRRNVDARKPLRLARD--------EFDRVGAQPWADMAR 821 Query: 816 NFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLY 875 + + LT +E Q+ L G SN +I L ++ T+ H+ +Y Sbjct: 822 EQLRAAGESDGRRRPSKGESLTVQERQIAELASQGLSNREIGQRLFISHRTVGAHLYRIY 881 Query: 876 QKLGVAHRQDAVQHAQQLL 894 +LG+ R L Sbjct: 882 PRLGITSRGRLSAALAALG 900 >UniRef50_C7QI55 Transcriptional regulator, LuxR family n=2 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QI55_CATAD Length = 905 Score = 171 bits (435), Expect = 8e-41, Method: Composition-based stats. Identities = 123/933 (13%), Positives = 236/933 (25%), Gaps = 95/933 (10%) Query: 15 HTVVRERLLAKLSGA------NNFRLALITSPAGYGKTTLISQWAAGKNDIGWYS----- 63 + R A L + L++ AG GKT L+ D+ Sbjct: 2 KLLGRRAECAHLDALFKTMRDGGSDVLLLSGEAGIGKTALLDYAVRAAADLRILRTSGVE 61 Query: 64 --LDEGDNQQERFASYLIAAVQQATNGHCAICETM----AQKRQYASLTSLFAQLFIELA 117 +D R L+ V T+ A + L L + A Sbjct: 62 SEMDLPYAALHRLCLPLLDGVDHLPAPQAEALATVFGTRAGETPGPFLVGLGVLNLLAEA 121 Query: 118 EWHSPLYLVIDDYHLITNPVIHESMRFFIRHQPENLTLVVLSRNLPQLGIANLRVRDQLL 177 PL +DD H + + R + E++ +++ SR L Sbjct: 122 ARGGPLLCAVDDAHWLDDASAQAIAFVARRLRAESILMLITSRGPIPSM-------RGLA 174 Query: 178 EIGSQQLAFTHQEAKQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAH 237 E G + LA A + D + P++ + I + G + + Sbjct: 175 EFGVEGLA--PTAAGELLDSVVRWPLDDGVRAAILAEARGN---PLALLELPLASPDRLA 229 Query: 238 KSARRLAGINASHLSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMR 297 L + + + + ++ LL +A + + LI R Sbjct: 230 GGFGLLEATALTGRIEESFQRRISELPADSQELLLLAAAESAGDPVLIWRAAAVLGLSPE 289 Query: 298 LEEIERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGFP 357 + L + HPL + + +HR AE+ + P Sbjct: 290 AGGACQDAELLTI---GVRFAFRHPLVRSAVYHAAS---PDARRRVHRVLAEATSREADP 343 Query: 358 SEAIHHALAAGD--ALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLL--ENPQLVL 413 H A + + L A + L+ L+ + + L Sbjct: 344 DRRAWHLAQAAEKQDEAVAAELEASADRAQSRGGLAAAAAFLERAAALTPDPVRRAEREL 403 Query: 414 LQAWLMQSQHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAK 473 L A LL + E ++ A LR +A G A L Sbjct: 404 LAARDKYHAGAPEGAQILLDKVE---SGPPDELRSAHVRQLRGHLAFVTGGAVRAPSLLL 460 Query: 474 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD-VWHYALWSLI 532 A G + + + ++ Sbjct: 461 EAARRFEGLDPVLARETYLDAIIYSLRTGRFAEGVTVTEVARAAVAAPVPSSPPRARDVL 520 Query: 533 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS 592 + + +A + + L +L W + + S Sbjct: 521 LDAFAVLYTDGHVKGVPLVRQALEGFTLEGLSVTQATRWLSLACYGAFATWDDVAWEKLS 580 Query: 593 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 652 + + + + + L G A L + ++ Sbjct: 581 QENVRHIRETGALGMLPVAHSQRMLAHLHAGQYQAAADLLEESDAIVAAIGVDRPAYDV- 639 Query: 653 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH--------------------------- 685 G A LR Sbjct: 640 ----AAVAAWRGQDEQATELLRIAENAAAERRDGNGFTFVKYAFAVMYNGLGRFAEAREA 695 Query: 686 ------------FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 733 F + A + G+ A E+ E + S + L Sbjct: 696 ALAAAASPTGSAFAFWALSELVEAALRCGDRAQA----EQAMEQLSTTTAPSATDWGLGT 751 Query: 734 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 793 + ++A+ +A+ R+ + + ++ Q Sbjct: 752 EARARALLSDGAEAEAHYREAIDRLGRSRGVVDLA----RTHLLYGEWLRRQDRTADAQE 807 Query: 794 RAQRILREINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSN 853 + Q +A + P +T LT++E Q+ G SN Sbjct: 808 QLSTAHTRFVQIGAEAYADRARRELAACGIAVAGPTAQKTLELTEQERQIARRARDGRSN 867 Query: 854 EQIAGELEVAATTIKTHIRNLYQKLGVAHRQDA 886 +I EL ++A T++ H+R ++ KLG++ R++ Sbjct: 868 TEIGVELFLSARTVEWHLRKVFSKLGISSRREL 900 >UniRef50_D1XAP8 Transcriptional regulator, LuxR family n=2 Tax=Streptomyces RepID=D1XAP8_9ACTO Length = 915 Score = 171 bits (435), Expect = 8e-41, Method: Composition-based stats. Identities = 134/906 (14%), Positives = 251/906 (27%), Gaps = 74/906 (8%) Query: 27 SGANNFRLALITSPAGYGKTTLISQWAAGKNDIGWYSLDEGDNQQER-----FASYLIAA 81 +AL+T G GKTTL+S ++ G L + L + Sbjct: 20 CAVKGRTVALVTGSGGVGKTTLLSSFSGYAESAGALVLSAAGAHSGQDRSLGMLLRLFRS 79 Query: 82 VQQATNGHCAICETMAQKRQYASLTSLFAQLFIEL------AEWHSPLYLVIDDYHLITN 135 V+ I + + +S A EL A PL L +DD Sbjct: 80 VELEAGQEARIERLLTLPEGNSQGSSPSACAVDELTEILLEAADGRPLVLAVDDTQYADP 139 Query: 136 PVIHESMRFFIRHQPENLTLVVLSRN----LPQLGIANLRVRDQLLEIGSQQLAFTHQEA 191 + + R + V P L +A + + Q L+ Sbjct: 140 ASLRALLLILRRLASSPVVAVFTEWRIFSSKPPLVLAEFINQPYFHLLNLQPLSLDGV-T 198 Query: 192 KQFFDCRLSSPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASHL 251 RL + G LQ++ R+ H + L Sbjct: 199 GWLRRRRLGEATAEFLAPSFLAATGGSPLFLQVLFQDQRRAFHEREPGDVDSLSAMDAAL 258 Query: 252 ----SDYLVDEVLDNVDLATRHFLLKSAILR-SMNDALITRVT--GEENGQMRLEEIERQ 304 V+ L D A+L + ++ R+ + L+ + Sbjct: 259 KGTHFKVAVEACLHRWDPQLLDVARGLAVLGAPASADVLARLLNSEQRTVVEALDALAAT 318 Query: 305 GLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAESWMAQGF-PSEAIHH 363 GL + H L ++ +A + G PSE Sbjct: 319 GLL-------RSGWFSHQAARAAA---LSGLDGETLTALYERSALLLHSDGAVPSEVAER 368 Query: 364 ALAAG--DALMLRDILLNHAWSLFNHSELSLLEESLKALPWDSLLENPQLVLLQAWLMQS 421 +AAG D+L N AW E L+ + +L A Sbjct: 369 LVAAGGIAEDWSVDVLRNAAWQALREGNPGRAAEFLEVAHQACSDVRERAEVLGALARVL 428 Query: 422 QHRYGEVNTLLARAEHEIKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP 481 T L E + +++ + + + G DEA + Sbjct: 429 WLTKPTAVTSL--LEPLCRSLQQGNLSVRDSVALSTFLAWQGRADEAALVLGQVDTRGDT 486 Query: 482 GWFYSRIVATSVLGEVLHCKGELTRSLA--------------------LMQQTEQMARQH 521 + A L++ EQ+ + Sbjct: 487 CDLAGEAELALARQWIRWVVPFKGADAADEASPAYPVEEAAERASWSDLVRSAEQVLQCC 546 Query: 522 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 581 + ++ +L L A E + L+ + L ++ + Sbjct: 547 RIADALPVVVLSALLVLAFDDKLDEAQRWCETLGPEADA--LQAVAWVAMLATVQGLVAV 604 Query: 582 AWARLDEAEASARSGIEVLSSYQPQQQLQC-LAMLIQCSLARGDLDNARSQLNRLENLLG 640 L +AE +R + V+ + L L+ L+ + A G D A + + Sbjct: 605 RRGDLIDAERHSRRALTVMPQHNWGAALGLPLSGLVHATTAMGRTDEAETLIKEALPEAR 664 Query: 641 NGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR---HTAKPEFANNHFLQGQWRNIARA 697 + ++ R ++ AA + + ++A A Sbjct: 665 RNPFWLHFLH----ARGRFYLENNRPYAALADFQTCGRLLGGTLLGHANFVSWRCDLAEA 720 Query: 698 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 757 + L + + +LEE + R L ++ Q R S + + L Sbjct: 721 WLRLDDARSGKALLEEQLTRVNA-DDKRVRGRTLRIMAATLKQPARASMLREAVKVLLDS 779 Query: 758 ANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREINQHHRHKFAHFDENF 817 +R EA + R + ++ + ++ + + Sbjct: 780 GDRLELALALADSSEAELECGRFAEFRLISHQAKRMAKMCGAEPLYWRLQNSGSVEEPGE 839 Query: 818 VERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQK 877 L + + L+ E +V L G SN +I+ L + +T++ H+ Y+K Sbjct: 840 TPALRKTIH-----QFALLSDAERKVAALAAQGRSNREISQTLFITVSTVEQHLTKTYRK 894 Query: 878 LGVAHR 883 LGV+ R Sbjct: 895 LGVSSR 900 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.151 0.387 Lambda K H 0.267 0.0463 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,066,619,508 Number of Sequences: 3077464 Number of extensions: 253348860 Number of successful extensions: 3759363 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 22716 Number of HSP's successfully gapped in prelim test: 107453 Number of HSP's that attempted gapping in prelim test: 1920844 Number of HSP's gapped (non-prelim): 680234 length of query: 901 length of database: 1,040,396,356 effective HSP length: 138 effective length of query: 763 effective length of database: 615,706,324 effective search space: 469783925212 effective search space used: 469783925212 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 98 (42.2 bits)