100 d2j0sa1 Probab=99.02   E-value=2.1e-08  Score=78.21  Aligned_columns=171  Identities=20%

Q ss_pred             HHHHHHHHHHHHHCCEEEEECCCCCCHHH--HHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             78999999999868959997687678424--6889998658789980899688269999999999998377988720147
Q batch____        80 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYK  157 (1300)
Q Consensus        80 ~~~r~eIl~aI~~nqVvII~GeTGSGKTT--QiPq~lle~g~~~~g~I~~TQPRRiAA~svA~RVA~Elg~~lG~~VGY~  157 (1300)
                      +....+.+..+.+.+=+||+++||||||.  .+|-+..-.........+...|-+..+......+.. ++...+..++-.
T Consensus        41 ~~iQ~~aip~~~~g~dviv~a~TGsGKTl~y~lp~l~~l~~~~~~~~~~~l~~~~~l~~~~~~~~~~-~~~~~~~~~~~~  119 (222)
T d2j0sa1          41 SAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQCHAC  119 (222)
T ss_dssp             CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEEEE
T ss_pred             CHHHHHHHHHHHCCCEEEEEECCCCCCCCEEHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHH-HHHHCCCEEEEE
T ss_conf             9899998412538986999972899884123225799875202345411421026777899999999-730259629999


Q ss_pred             EECCCCCCC------CCEEEEECCHHHHHHHHCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             624376589------94399965969998974184-60388889996873188668899999999986489967999548
Q batch____       158 VRFSDHVSD------NTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSA  230 (1300)
Q Consensus       158 VRfe~~~s~------~T~I~~~TdGiLLrel~~Dp-~L~~ys~IIIDEaHERsl~tD~LL~lLK~ll~~R~dLKlIimSA  230 (1300)
                      +........      ...|.++|.|.|+..+.+.. .|....++|+||+|. -++-.|---+-+-+-..+++.++|++||
T Consensus       120 ~~~~~~~~~~~~~~~~~~i~v~tp~~l~~~~~~~~~~l~~i~~lViDE~d~-~~~~~~~~~l~~Il~~~~~~~Q~v~~SA  198 (222)
T d2j0sa1         120 IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-MLNKGFKEQIYDVYRYLPPATQVVLISA  198 (222)
T ss_dssp             CTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HTSTTTHHHHHHHHTTSCTTCEEEEEES
T ss_pred             EECCCCHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCEEEEEEECHHH-HCCCCHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             964864278897305770696043788677655886602320799732255-1354669999999997698884999986


Q ss_pred             CCCH--HHHHHHHCCCCEEEECCC
Q ss_conf             7698--999987289989995781
Q batch____       231 TIDP--ERFSRHFNNAPIIEVSGR  252 (1300)
Q Consensus       231 Tld~--e~f~~yF~~apvi~V~GR  252 (1300)
                      |+..  +.+.+.|-+-|+.-+=||
T Consensus       199 T~~~~~~~l~~~~l~~p~~i~i~~  222 (222)
T d2j0sa1         199 TLPHEILEMTNKFMTDPIRILVKR  222 (222)
T ss_dssp             CCCHHHHTTGGGTCSSCEEECCCC
T ss_pred             CCCHHHHHHHHHHCCCCEEEEECC
T ss_conf             699899999999779988998219