18/01/2012 00:03:43 : INFO  : Run start: Wed Jan 18 00:03:42 GMT 2012
18/01/2012 00:03:46 : INFO  : Initialised job
18/01/2012 00:03:47 : INFO  : Renaming log file 'phyre2_20120118_000342.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/fe47020a036262af/phyre_20120118_000342.log'
18/01/2012 00:03:48 : INFO  : Initialised job:
Sequence
>batch____
MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKA
GNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNF
RHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTK
KGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQ
REELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGF
VKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH

18/01/2012 00:03:49 : INFO  : Checked sequence
18/01/2012 00:03:51 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 00:03:51 : INFO  : PSI-BLAST 3 iterations
18/01/2012 00:05:09 : INFO  : PSI-BLAST 5 iterations
18/01/2012 00:06:17 : INFO  : Finished PSI-BLAST
18/01/2012 00:06:18 : INFO  : Running Buildali to generate a3m file
18/01/2012 00:12:43 : INFO  : Converting to HMM
18/01/2012 00:12:46 : INFO  : Calibrating HMM
18/01/2012 00:13:01 : INFO  : Searching HMM database
18/01/2012 00:20:36 : INFO  : Finished buildali
18/01/2012 00:20:37 : INFO  : Predicting secondary structure
18/01/2012 00:20:41 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 00:20:43 : INFO  : Predicting Disordered regions
18/01/2012 00:20:46 : INFO  : Predicted Disorder (Disopred)
18/01/2012 00:20:47 : INFO  : Running memsat_svm check
18/01/2012 00:22:50 : INFO  : Running memsat_svm full
18/01/2012 00:29:38 : INFO  : Predicted Transmembrane (memsat_svm) ID 'fe47020a036262af'
18/01/2012 00:29:39 : INFO  : Initialising fold library search
18/01/2012 00:29:42 : INFO  : Initialised search input
18/01/2012 00:29:43 : INFO  : Building Ensemble models
18/01/2012 00:29:46 : INFO  : Building hh.d1musa_.model.1.pdb
18/01/2012 00:29:57 : INFO  : Building hh.c3hefB_.model.2.pdb
18/01/2012 00:30:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/fe47020a036262af/hh.c3hefB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/fe47020a036262af/c3hefB_.4.pdb
18/01/2012 00:30:10 : INFO  : Building d1musa_.1.pdb
18/01/2012 00:30:22 : INFO  : Building d1b7ea_.2.pdb
18/01/2012 00:30:32 : INFO  : Building d1cxqa_.3.pdb
18/01/2012 00:30:41 : INFO  : Building c3hefB_.4.pdb
18/01/2012 00:30:50 : INFO  : Building d1asua_.5.pdb
18/01/2012 00:30:59 : INFO  : Building c3nf9A_.6.pdb
18/01/2012 00:31:08 : INFO  : Building d1a9xa1.7.pdb
18/01/2012 00:31:19 : INFO  : Building d1c0ma2.8.pdb
18/01/2012 00:31:29 : INFO  : Building c1c0mA_.9.pdb
18/01/2012 00:31:39 : INFO  : Building d1slma1.10.pdb
18/01/2012 00:31:49 : INFO  : Building c3ohwB_.11.pdb
18/01/2012 00:31:58 : INFO  : Building c2ky4A_.12.pdb
18/01/2012 00:32:07 : INFO  : Building c2l3wA_.13.pdb
18/01/2012 00:32:15 : INFO  : Building d1k78a1.14.pdb
18/01/2012 00:32:24 : INFO  : Building c3pruD_.15.pdb
18/01/2012 00:32:35 : INFO  : Building c2l06A_.16.pdb
18/01/2012 00:32:44 : INFO  : Building d1hyva_.17.pdb
18/01/2012 00:32:53 : INFO  : Building c1q2iA_.18.pdb
18/01/2012 00:33:02 : INFO  : Building d1exqa_.19.pdb
18/01/2012 00:33:12 : INFO  : Building c3pvpA_.20.pdb
18/01/2012 00:33:42 : INFO  : Finished HH model building
18/01/2012 00:33:43 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 00:34:34 : INFO  : html domain output complete ID 'fe47020a036262af'
18/01/2012 00:53:36 : INFO  : Run end  : Wed Jan 18 00:53:35 GMT 2012
