BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (630 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P43703 DNA topoisomerase 4 subunit B n=456 Tax=Bacteria... 1031 0.0 UniRef50_B3R5I8 DNA topoisomerase IV, subunit B n=15 Tax=Proteob... 605 e-171 UniRef50_Q0QCK3 ParE (Fragment) n=163 Tax=cellular organisms Rep... 517 e-145 UniRef50_D0MI55 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Bact... 481 e-134 UniRef50_Q2S2H3 Type II DNA topoisomerase, B subunit n=3 Tax=Bac... 464 e-129 UniRef50_B9ZQ26 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thio... 453 e-126 UniRef50_P94281 DNA gyrase subunit B n=211 Tax=cellular organism... 447 e-124 UniRef50_B8FXX0 DNA gyrase subunit B n=70 Tax=Bacteria RepID=B8F... 440 e-122 UniRef50_P50028 DNA gyrase subunit B n=331 Tax=cellular organism... 436 e-120 UniRef50_O50627 DNA gyrase subunit B n=82 Tax=cellular organisms... 436 e-120 UniRef50_B6BRC2 DNA gyrase subunit B n=1 Tax=Candidatus Pelagiba... 432 e-119 UniRef50_P43053 DNA gyrase subunit B n=78 Tax=Bacteria RepID=GYR... 431 e-119 UniRef50_Q1V1K8 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA... 429 e-118 UniRef50_D0J983 DNA gyrase subunit B n=22 Tax=cellular organisms... 425 e-117 UniRef50_C7QFM2 DNA gyrase subunit B n=8 Tax=Bacteria RepID=C7QF... 425 e-117 UniRef50_D0RNK2 DNA topoisomerase IV, B subunit n=1 Tax=alpha pr... 423 e-117 UniRef50_Q9A0L0 DNA gyrase subunit B n=56 Tax=cellular organisms... 423 e-117 UniRef50_P21558 DNA gyrase subunit B n=61 Tax=cellular organisms... 421 e-116 UniRef50_Q2NJM1 DNA gyrase subunit B n=5 Tax=Mollicutes RepID=Q2... 421 e-116 UniRef50_B6GDL9 DNA gyrase subunit B n=2 Tax=Collinsella RepID=B... 418 e-115 UniRef50_Q9X3Y6 DNA gyrase subunit B n=840 Tax=cellular organism... 417 e-115 UniRef50_Q2FUD6 DNA gyrase subunit B n=1 Tax=Methanospirillum hu... 416 e-114 UniRef50_Q9ZLX3 DNA gyrase subunit B n=50 Tax=Epsilonproteobacte... 409 e-112 UniRef50_A5TY73 DNA gyrase subunit B n=542 Tax=Bacteria RepID=GY... 407 e-112 UniRef50_D0RQH0 DNA gyrase subunit B n=2 Tax=Bacteria RepID=D0RQ... 405 e-111 UniRef50_C7M118 DNA gyrase subunit B n=1 Tax=Acidimicrobium ferr... 404 e-111 UniRef50_D0LFL2 DNA gyrase subunit B n=1 Tax=Haliangium ochraceu... 404 e-111 UniRef50_Q04WF3 DNA gyrase subunit B n=20 Tax=Bacteria RepID=Q04... 403 e-111 UniRef50_O67137 DNA gyrase subunit B n=13 Tax=cellular organisms... 403 e-110 UniRef50_P34031 DNA gyrase subunit B n=54 Tax=Bacteria RepID=GYR... 403 e-110 UniRef50_A8LVU4 DNA gyrase subunit B domain protein n=37 Tax=Act... 400 e-110 UniRef50_C4G1I8 Putative uncharacterized protein n=1 Tax=Abiotro... 398 e-109 UniRef50_D1BTM8 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Acti... 398 e-109 UniRef50_P50074 DNA gyrase subunit B, novobiocin-resistant n=117... 397 e-109 UniRef50_Q94BZ7 DNA gyrase subunit B, mitochondrial n=83 Tax=cel... 396 e-108 UniRef50_C1DUC4 DNA gyrase subunit B n=5 Tax=Bacteria RepID=C1DU... 395 e-108 UniRef50_B7G298 Predicted protein n=3 Tax=cellular organisms Rep... 395 e-108 UniRef50_A9KS52 DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Bac... 393 e-108 UniRef50_Q9Z8R3 DNA gyrase subunit B n=80 Tax=cellular organisms... 392 e-107 UniRef50_B8GXQ0 DNA gyrase subunit B n=17 Tax=cellular organisms... 392 e-107 UniRef50_C6PY14 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clos... 392 e-107 UniRef50_P66938 DNA topoisomerase 4 subunit B n=158 Tax=Bacteria... 392 e-107 UniRef50_B2URM5 DNA gyrase subunit B n=25 Tax=Bacteria RepID=B2U... 392 e-107 UniRef50_D2NTW6 Type IIA topoisomerase, B subunit n=10 Tax=Actin... 390 e-107 UniRef50_P78016 DNA topoisomerase 4 subunit B n=3 Tax=Mycoplasma... 389 e-106 UniRef50_Q6GKU0 DNA gyrase subunit B n=143 Tax=cellular organism... 387 e-106 UniRef50_Q83G36 DNA gyrase subunit B-like protein n=2 Tax=Trophe... 387 e-106 UniRef50_Q1MQ88 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q1MQ... 387 e-106 UniRef50_C3XDF7 DNA gyrase subunit B n=5 Tax=Campylobacterales R... 386 e-105 UniRef50_Q4AAR9 Topoisomerase IV subunit B n=9 Tax=Mycoplasma Re... 385 e-105 UniRef50_A0Q197 DNA topoisomerase IV subunit B n=34 Tax=Clostrid... 383 e-105 UniRef50_Q59526 DNA topoisomerase 4 subunit B n=9 Tax=Bacteria R... 383 e-104 UniRef50_B5YGU1 DNA gyrase subunit B n=9 Tax=Bacteria RepID=B5YG... 383 e-104 UniRef50_P0AES7 DNA gyrase subunit B n=740 Tax=root RepID=GYRB_E... 382 e-104 UniRef50_Q2GD49 DNA gyrase subunit B n=9 Tax=cellular organisms ... 382 e-104 UniRef50_Q89B37 DNA gyrase subunit B n=30 Tax=Proteobacteria Rep... 379 e-103 UniRef50_B1ZTK2 DNA gyrase subunit B n=194 Tax=cellular organism... 378 e-103 UniRef50_A3EQC0 DNA gyrase subunit B n=7 Tax=Bacteria RepID=A3EQ... 376 e-102 UniRef50_O51859 DNA gyrase subunit B n=208 Tax=Bacteria RepID=GY... 376 e-102 UniRef50_B6IVV7 DNA gyrase subunit B n=192 Tax=cellular organism... 375 e-102 UniRef50_A6DH73 DNA gyrase subunit B n=7 Tax=cellular organisms ... 371 e-101 UniRef50_UPI0001A7B046 ATP binding / DNA binding / DNA topoisome... 370 e-101 UniRef50_A6G5S5 DNA gyrase subunit B n=11 Tax=Bacteria RepID=A6G... 370 e-101 UniRef50_D0WQJ3 Putative DNA gyrase subunit B n=1 Tax=Actinomyce... 369 e-100 UniRef50_D2R8B1 DNA gyrase, B subunit n=80 Tax=Bacteria RepID=D2... 367 e-100 UniRef50_B2UCF3 DNA gyrase subunit B n=47 Tax=Proteobacteria Rep... 366 2e-99 UniRef50_Q98RQ4 DNA gyrase subunit B n=13 Tax=cellular organisms... 363 8e-99 UniRef50_C5B4P3 DNA gyrase, subunit B n=1 Tax=Methylobacterium e... 363 1e-98 UniRef50_B3TAI0 Putative DNA gyrase B n=1 Tax=uncultured marine ... 360 7e-98 UniRef50_A1TI33 DNA gyrase subunit B n=16 Tax=Burkholderiales Re... 357 8e-97 UniRef50_UPI0001C311B1 DNA gyrase, B subunit n=1 Tax=Conexibacte... 355 3e-96 UniRef50_Q1RHT8 DNA gyrase subunit B n=702 Tax=Proteobacteria Re... 346 1e-93 UniRef50_A0LUT9 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Act... 346 1e-93 UniRef50_UPI00016C54E0 DNA gyrase subunit B n=1 Tax=Gemmata obsc... 342 2e-92 UniRef50_A1SCM1 DNA gyrase subunit B n=28 Tax=Actinomycetales Re... 324 5e-87 UniRef50_D1C5K6 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Spha... 319 2e-85 UniRef50_O33367 DNA gyrase subunit B n=6 Tax=Bacteria RepID=GYRB... 315 2e-84 UniRef50_Q7RHG3 DNA topoisomerase II, putative n=3 Tax=Plasmodiu... 302 2e-80 UniRef50_A7I8U0 DNA gyrase subunit B n=1 Tax=Candidatus Methanor... 295 3e-78 UniRef50_A8S818 Putative uncharacterized protein n=6 Tax=Bacteri... 294 7e-78 UniRef50_Q9FAX1 DNA gyrase subunit B (Fragment) n=60 Tax=Bacteri... 290 9e-77 UniRef50_Q18GY2 DNA gyrase subunit B n=10 Tax=cellular organisms... 288 3e-76 UniRef50_A3DC64 DNA topoisomerase (ATP-hydrolyzing) n=11 Tax=Bac... 284 8e-75 UniRef50_A6TSS9 DNA gyrase, subunit B domain protein n=1 Tax=Alk... 279 3e-73 UniRef50_Q9FAX2 DNA gyrase subunit B (Fragment) n=166 Tax=root R... 270 2e-70 UniRef50_P77966 Ssp gyrB intein n=45 Tax=cellular organisms RepI... 267 1e-69 UniRef50_A1EGM8 DNA gyrase subunit B (Fragment) n=1 Tax=uncultur... 261 4e-68 UniRef50_Q4UIX0 DNA topoisomerase II, putative n=2 Tax=Theileria... 258 6e-67 UniRef50_B2RL68 DNA topoisomerase IV B subunit n=60 Tax=Bacteria... 256 2e-66 UniRef50_Q10XN8 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q10X... 250 1e-64 UniRef50_Q1NK64 DNA topoisomerase II:ATP-binding region, ATPase-... 248 4e-64 UniRef50_B1ZME3 DNA topoisomerase type IIA subunit B region 2 do... 247 1e-63 UniRef50_D2QHC5 DNA topoisomerase type IIA subunit B region 2 do... 246 3e-63 UniRef50_Q9X3Y5 DNA gyrase subunit B (Fragment) n=740 Tax=cellul... 240 1e-61 UniRef50_Q59189 DNA topoisomerase 4 subunit B n=27 Tax=Bacteria ... 238 6e-61 UniRef50_A7ASL8 DNA gyrase subunit B, putative n=1 Tax=Babesia b... 238 7e-61 UniRef50_UPI00016B23A5 DNA gyrase subunit B n=1 Tax=candidate di... 233 1e-59 UniRef50_Q8GD47 DNA gyrase subunit B (Fragment) n=21 Tax=Bacteri... 231 6e-59 UniRef50_Q2JC55 DNA topoisomerase II n=4 Tax=Actinomycetales Rep... 231 7e-59 UniRef50_Q44272 DNA gyrase subunit B (Fragment) n=2942 Tax=cellu... 230 1e-58 UniRef50_C0W359 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Acti... 227 1e-57 UniRef50_C7PPD8 DNA topoisomerase type IIA subunit B region 2 do... 226 3e-57 UniRef50_D2RAT5 DNA gyrase, B subunit, C-terminal domain protein... 225 3e-57 UniRef50_D2QB32 GyrB2 DNA gyrase subunit B n=8 Tax=Bifidobacteri... 221 5e-56 UniRef50_B6XTR9 Putative uncharacterized protein n=2 Tax=Bifidob... 220 1e-55 UniRef50_B6EUG7 DNA gyrase subunit B (Fragment) n=6 Tax=Actinomy... 218 5e-55 UniRef50_A3Q8K7 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Myco... 208 4e-52 UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO 206 2e-51 UniRef50_B3LD45 DNA gyrase subunit b, putative n=1 Tax=Plasmodiu... 205 4e-51 UniRef50_A5K8Q8 DNA gyrase subunit b, putative n=1 Tax=Plasmodiu... 204 1e-50 UniRef50_A6N697 DNA gyrase subunit B (Fragment) n=2 Tax=uncultur... 201 8e-50 UniRef50_Q6UGM9 DNA gyrase B subunit (Fragment) n=1 Tax=Fusobact... 198 7e-49 UniRef50_UPI0001976865 DNA topoisomerase (ATP-hydrolyzing) n=1 T... 197 1e-48 UniRef50_C3IT50 DNA gyrase subunit B n=3 Tax=Bacillus thuringien... 189 4e-46 UniRef50_A3SXB5 DNA topoisomerase IV subunit B n=1 Tax=Sulfitoba... 178 6e-43 UniRef50_Q8I528 Term=DNA gyrase subunit B;evidence=inferred from... 176 2e-42 UniRef50_B4V0A2 DNA gyrase subunit B n=1 Tax=Streptomyces sp. Mg... 168 6e-40 UniRef50_C0DAN0 Putative uncharacterized protein (Fragment) n=1 ... 167 8e-40 UniRef50_B2ZYK3 Type IIA topoisomerase n=1 Tax=Ralstonia phage R... 165 4e-39 UniRef50_Q9HGH7 DNA topoisomerase 2 (Fragment) n=1 Tax=Pichia ku... 159 3e-37 UniRef50_A7XYG8 GyrB (Fragment) n=6 Tax=Chlamydia trachomatis Re... 158 5e-37 UniRef50_B3SFQ4 Putative uncharacterized protein (Fragment) n=1 ... 156 3e-36 UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC29... 156 3e-36 UniRef50_A9CRV4 DNA gyrase subunit B (Fragment) n=2 Tax=Bradyrhi... 155 4e-36 UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP... 151 8e-35 UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 149 3e-34 UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 147 1e-33 UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon biene... 146 2e-33 UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA 146 2e-33 UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus AT... 145 5e-33 UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodact... 143 2e-32 UniRef50_B5H7D6 DNA gyrase subunit B n=2 Tax=Streptomyces RepID=... 142 3e-32 UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group... 142 6e-32 UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae R... 141 7e-32 UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermoph... 140 1e-31 UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A... 140 1e-31 UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuni... 139 2e-31 UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyosteli... 139 4e-31 UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalu... 139 4e-31 UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dicty... 138 6e-31 UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginali... 137 1e-30 UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_P... 137 1e-30 UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID... 137 1e-30 UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=... 137 2e-30 UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV... 137 2e-30 UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 136 2e-30 UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2... 136 2e-30 UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 134 9e-30 UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP... 134 1e-29 UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycod... 133 2e-29 UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID... 132 4e-29 UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 ... 132 4e-29 UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa C... 131 1e-28 UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota Rep... 130 1e-28 UniRef50_UPI0000DA3D74 PREDICTED: similar to topoisomerase (DNA)... 130 1e-28 UniRef50_C9DGI8 Gp60plus39 DNA topoisomerase subunit n=1 Tax=Def... 130 1e-28 UniRef50_UPI0001C4799C UPI0001C4799C related cluster n=1 Tax=unk... 128 6e-28 UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2... 126 3e-27 UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma poly... 125 3e-27 UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae Re... 125 4e-27 UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS11... 124 1e-26 UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=... 123 2e-26 UniRef50_Q76Z86 Topoisomerase II large subunit n=1 Tax=Aeromonas... 123 2e-26 UniRef50_C8XUB6 Topoisomerase II large subunit n=1 Tax=Shigella ... 122 5e-26 UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurel... 121 9e-26 UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota Rep... 121 1e-25 UniRef50_B1N7R8 Gyrase b (Fragment) n=1 Tax=uncultured bacterium... 116 2e-24 UniRef50_Q56C43 Gp60plus39 DNA topoisomerase subunit n=3 Tax=T4-... 115 5e-24 UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms ... 114 1e-23 UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5... 113 2e-23 UniRef50_C0F8C8 DNA gyrase, B subunit (Fragment) n=1 Tax=Wolbach... 111 9e-23 UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii Re... 111 1e-22 UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepI... 109 4e-22 UniRef50_Q04PE7 DNA topoisomerase (ATP-hydrolyzing), subunit B n... 108 6e-22 UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae Re... 108 8e-22 UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassio... 107 1e-21 UniRef50_P09176 DNA topoisomerase large subunit n=13 Tax=T4-like... 107 1e-21 UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV 107 1e-21 UniRef50_B9U3G6 DNA topoisomerase 2 (Fragment) n=1 Tax=Pleurotus... 107 1e-21 UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q... 106 3e-21 UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepI... 105 5e-21 UniRef50_UPI0001788AA3 transcriptional regulator, ArsR family n=... 104 9e-21 UniRef50_B4YQA0 DNA gyrase subunit B (Fragment) n=1 Tax=Lactobac... 103 2e-20 UniRef50_UPI0001908742 DNA topoisomerase IV subunit B n=1 Tax=Rh... 101 8e-20 UniRef50_D1AIT2 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Seba... 99 5e-19 UniRef50_Q6Y3B0 Gyrase B (Fragment) n=1 Tax=Geobacter pelophilus... 99 5e-19 UniRef50_Q44273 DNA gyrase subunit B (Fragments) n=5 Tax=Acineto... 95 1e-17 UniRef50_C9E3K9 DNA gyrase subunit B (Fragment) n=1 Tax=Rhodococ... 93 3e-17 UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis... 93 3e-17 UniRef50_Q2SFQ7 Type IIA topoisomerase (DNA gyrase/topo II, topo... 92 6e-17 UniRef50_UPI00016B21F7 DNA gyrase subunit B n=1 Tax=candidate di... 92 7e-17 UniRef50_Q1CZR7 DNA gyrase, B subunit, truncated n=1 Tax=Myxococ... 92 8e-17 UniRef50_A5M9T1 DNA gyrase subunit B n=2 Tax=Streptococcus pneum... 91 1e-16 UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole geno... 91 1e-16 UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 85 7e-15 UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2... 85 9e-15 UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infesta... 84 2e-14 UniRef50_B1PJM5 DNA gyrase subunit B (Fragment) n=1 Tax=Micromon... 82 7e-14 UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon... 81 1e-13 UniRef50_UPI00016C4A69 DNA gyrase subunit B n=2 Tax=Gemmata obsc... 81 1e-13 UniRef50_B1PL25 DNA gyrase subunit B (Fragment) n=79 Tax=Bacteri... 80 2e-13 UniRef50_UPI0000382E10 COG0187: Type IIA topoisomerase (DNA gyra... 80 2e-13 UniRef50_A8V367 Gyrase B (Fragment) n=1 Tax=Hydrogenivirga sp. 1... 80 2e-13 UniRef50_Q196X4 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 77 2e-12 UniRef50_D2J2Q7 DNA gyrase subunit B (Fragment) n=7 Tax=Coryneba... 76 3e-12 UniRef50_C5Z2Y6 Putative uncharacterized protein Sb10g016438 (Fr... 75 5e-12 UniRef50_A6G3Y8 Type IIA topoisomerase (DNA gyrase/topo II, topo... 75 8e-12 UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea Rep... 74 2e-11 UniRef50_A8NKQ4 Putative uncharacterized protein n=1 Tax=Coprino... 73 3e-11 UniRef50_Q2B8E8 DNA gyrase, B subunit n=1 Tax=Bacillus sp. NRRL ... 73 3e-11 UniRef50_C1SL26 DNA gyrase subunit B n=1 Tax=Denitrovibrio aceti... 73 4e-11 UniRef50_Q7UUI4 DNA gyrase subunit B n=1 Tax=Rhodopirellula balt... 73 4e-11 UniRef50_C1ZHM4 Type IIA topoisomerase (DNA gyrase/topo II, topo... 70 2e-10 UniRef50_C7UEA1 Predicted protein n=22 Tax=Enterococcus faecalis... 68 9e-10 UniRef50_D2PP74 GCN5-related N-acetyltransferase n=1 Tax=Kribbel... 68 1e-09 UniRef50_Q6Y3A9 Gyrase B (Fragment) n=1 Tax=Pelobacter acidigall... 65 1e-08 UniRef50_A0MYL3 DNA gyrase B (Fragment) n=14 Tax=Streptomyces Re... 63 4e-08 UniRef50_A7C3L4 Topoisomerase B subunit n=1 Tax=Beggiatoa sp. PS... 62 6e-08 UniRef50_A7K5X7 DNA gyrase subunit B n=5 Tax=Gammaproteobacteria... 61 2e-07 UniRef50_Q9K2S8 GyrB protein (Fragment) n=2 Tax=Mycoplasma homin... 60 2e-07 UniRef50_C0SNC2 DNA gyrase subunit B (Fragment) n=87 Tax=Lactoba... 60 2e-07 UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses... 59 8e-07 UniRef50_UPI0000D546F8 DNA gyrase, B subunit n=1 Tax=Psychroflex... 57 3e-06 UniRef50_A6N6C7 DNA gyrase subunit B (Fragment) n=1 Tax=uncultur... 56 5e-06 UniRef50_B0YNR7 DNA gyrase subunit B (Fragment) n=7 Tax=Gammapro... 54 1e-05 UniRef50_C3RSA4 DNA gyrase subunit B (Fragment) n=3 Tax=Lactobac... 51 2e-04 UniRef50_A4YWI0 DNA gyrase subunit B GyrB n=1 Tax=Bradyrhizobium... 50 2e-04 UniRef50_Q6E0M3 GyrB (Fragment) n=1 Tax=Bacillus thuringiensis R... 50 2e-04 UniRef50_D0L8E8 DNA topoisomerase n=22 Tax=cellular organisms Re... 50 2e-04 UniRef50_B9PF30 Predicted protein n=6 Tax=cellular organisms Rep... 50 3e-04 UniRef50_Q401L8 DNA gyrase subunit B (Fragment) n=1 Tax=Mycobact... 47 0.002 UniRef50_Q5FEK8 Putative uncharacterized protein n=1 Tax=Ehrlich... 47 0.002 UniRef50_B4V6F8 Putative uncharacterized protein n=3 Tax=Actinom... 47 0.002 UniRef50_A9AY53 Putative uncharacterized protein n=1 Tax=Herpeto... 47 0.002 UniRef50_A9ZPQ0 DNA gyrase subunit B (Fragment) n=5 Tax=Coryneba... 47 0.003 UniRef50_C8NCI6 DNA gyrase subunit B n=1 Tax=Cardiobacterium hom... 47 0.003 UniRef50_Q9FYE9 DNA gyrase subunit B-like protein n=3 Tax=Arabid... 45 0.009 UniRef50_Q8IIJ0 DNA mismatch repair protein MLH1, putative n=8 T... 44 0.020 UniRef50_P23992 DNA topoisomerase small subunit n=1 Tax=Enteroba... 43 0.035 >UniRef50_P43703 DNA topoisomerase 4 subunit B n=456 Tax=Bacteria RepID=PARE_HAEIN Length = 632 Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/632 (76%), Positives = 558/632 (88%), Gaps = 2/632 (0%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 MT Y+A I VL LEPV+ RPGMYTDTTRPNHL QEVIDNSVDEALAG A +++VILH Sbjct: 1 MTTNYSAQEITVLKDLEPVQIRPGMYTDTTRPNHLAQEVIDNSVDEALAGFATKIEVILH 60 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 DQS+EV D+GRGMPVDIHP EGV VE+IL +LHAGGKFSNKNY+F+GGLHGVGISVVN Sbjct: 61 PDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGISVVN 120 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS+RV++ V+R+G++Y IAFENG KV++L+++GTCG+R TGT VHF P+ +FDS +FS Sbjct: 121 ALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTIVHFKPNPKYFDSAKFS 180 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240 VSRL H+L+AKAVLC G+EI F D++NNT+ W Y+DGL+DYL EAVNG TLP+KPF+G Sbjct: 181 VSRLRHLLRAKAVLCSGLEIKFIDKVNNTQDIWLYEDGLSDYLIEAVNGFETLPKKPFVG 240 Query: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300 F G EAV WALLWLPEGGEL+ ESYVNLIPT+QGGTHVNGLRQGLLDA+REFCE+RN+ Sbjct: 241 EFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFCEFRNL 300 Query: 301 LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ 360 LPRGVKL+A+DIWDRC+Y+LS+KMQD QFAGQTKERLSSRQ A FVSGV+KDAF LWLNQ Sbjct: 301 LPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAFSLWLNQ 360 Query: 361 NVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGD 420 NVQ AE LAE+AISSAQRR+RAAKKVVRKKL SGPALPGKLADC +QDL +TELFLVEGD Sbjct: 361 NVQDAEKLAEIAISSAQRRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEKTELFLVEGD 420 Query: 421 SAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQL 480 SAGGSAKQARDREYQAI+PL+GKILNTWEVS D+VL S E+HDI+VA+GIDPDS+DLSQL Sbjct: 421 SAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIAVALGIDPDSNDLSQL 480 Query: 481 RYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALT 540 RYGK+CILADADSDGLHIATLLCALF++HF LV+ GHVYVA+PPLYRIDL KEV+YAL Sbjct: 481 RYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRIDLNKEVFYALD 540 Query: 541 EEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTD 600 E EKE +L++LK KKGKPNVQRFKGLGEMNP QLRETT+DPNTRRLVQLT D +DQ +D Sbjct: 541 ENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYDLGEDQGSD 600 Query: 601 A--MMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 +MDMLLAKKRSEDR+NWLQ KGD ++ V Sbjct: 601 TLELMDMLLAKKRSEDRKNWLQAKGDQVDLSV 632 >UniRef50_B3R5I8 DNA topoisomerase IV, subunit B n=15 Tax=Proteobacteria RepID=B3R5I8_CUPTR Length = 663 Score = 605 bits (1559), Expect = e-171, Method: Compositional matrix adjust. Identities = 327/660 (49%), Positives = 420/660 (63%), Gaps = 32/660 (4%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 T Y+ +I VL GLEPV++RPGMYT T P H+ QEVIDN+ DEAL GH + V LH Sbjct: 5 TSQYSESSIRVLKGLEPVKQRPGMYTRTDNPLHIVQEVIDNASDEALGGHGSEILVTLHR 64 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN---YQFSGGLHGVGISV 118 D SL V DDGRG+PV IHPEEGVP VE++ RLHAGGKF Y FSGGLHGVG+SV Sbjct: 65 DGSLSVEDDGRGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGKGGAYAFSGGLHGVGVSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG-TCGKRNTGTSVHFWPDETFFDSP 177 NALS +++V V RDG + F G+ L G++ GT V WPD +FDS Sbjct: 125 TNALSTQLDVTVWRDGMCSTLTFSGGDVTVPLASRKLERGEKKNGTRVQVWPDARYFDSA 184 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNG-------L 230 ++ L +L++KAVL PGV++T E Q W Y GL YL EA+ + Sbjct: 185 AIPLAELQRLLRSKAVLLPGVKVTLVTEKTGERQTWQYDQGLKGYLVEALAQGSGAELVI 244 Query: 231 PTLPEKPFIGNFA-------GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGL 283 P + F A D E W + W E G + ESYVNLIPT GGTH +GL Sbjct: 245 PMFEGEHFADPDANPGEEGFADGEGASWVVAWT-EDGAPVRESYVNLIPTPAGGTHESGL 303 Query: 284 RQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCA 343 R+GL A++ F E + P+GVKL +ED++ R ++VLS K+ DPQF GQ KERL+SR Sbjct: 304 REGLFQAVKSFIEMHALQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQIKERLNSRDAV 363 Query: 344 AFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLAD 403 VS + A LWLN +V+ + LAE+ I AQ R RAA+KV +KK + LPGKL D Sbjct: 364 RLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQARTRAAQKVEKKKGSGVAVLPGKLTD 423 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C + D+ R ELFLVEGDSAGGSAK RD+E+QAI+PL+GK+LNTWE D + A+ EVHD Sbjct: 424 CESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDRLFANNEVHD 483 Query: 464 ISVAIGIDP----DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHV 519 I+VAIG+DP D DLS LRYGKICIL+DAD DG HI LL LF +HF L++ G+V Sbjct: 484 IAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLFFRHFPKLIETGNV 543 Query: 520 YVALPPLYRIDL---GK---EVYYALTEEEKEGVLEQLKRKKGKPN---VQRFKGLGEMN 570 YVA PPL+R+D GK + YAL E E E + ++L + K N + RFKGLGEM+ Sbjct: 544 YVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLLKDGVKENSWQISRFKGLGEMS 603 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 QL ETT++P+TRRL+ +T+ + D +T MM+ML+ K + RR+WL+EKG+ E ++ Sbjct: 604 AEQLWETTMNPDTRRLLPVTLGEYDLPQTVEMMNMLMGKGEAAQRRSWLEEKGNEVEADI 663 >UniRef50_Q0QCK3 ParE (Fragment) n=163 Tax=cellular organisms RepID=Q0QCK3_ECOLX Length = 251 Score = 517 bits (1332), Expect = e-145, Method: Compositional matrix adjust. Identities = 251/251 (100%), Positives = 251/251 (100%) Query: 290 AMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 AMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV Sbjct: 1 AMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 60 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 409 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL Sbjct: 61 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 120 Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG Sbjct: 121 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 180 Query: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI Sbjct: 181 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 240 Query: 530 DLGKEVYYALT 540 DLGKEVYYALT Sbjct: 241 DLGKEVYYALT 251 >UniRef50_D0MI55 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Bacteria RepID=D0MI55_RHOM4 Length = 648 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 275/627 (43%), Positives = 394/627 (62%), Gaps = 17/627 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT-RP--NHLGQEVIDNSVDEALAGHAKRVDV 57 + TY I+VL GLEPVR+RPGMY T +P +HL E++DN+VDEA+ G A ++V Sbjct: 4 LAATYTGKDIQVLEGLEPVRKRPGMYIGGTGKPGLHHLLWEIVDNAVDEAVNGFASLIEV 63 Query: 58 ILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 LHAD +S+ V D+GRG+PVD HP + +P +ELIL LHAGGKF KNY SGGLHGVG Sbjct: 64 TLHADGRSVTVTDNGRGIPVDPHPVKKIPTLELILTTLHAGGKFDRKNYITSGGLHGVGA 123 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALS+ + V+RDG+ Y F G+ L+VV R TGTS++F PD F++ Sbjct: 124 SVVNALSEELVATVKRDGKTYQQRFVRGKPKTKLKVVAE-NTRGTGTSIYFRPDPEIFET 182 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAV--NGLPTLP 234 F + L+ K L ++I FKDE + + ++ G+ +YLA V G + Sbjct: 183 TEFDPVWIREHLEIKTYLNRNLKIVFKDETSGERYEFHHEGGIVEYLARLVEEQGARVVH 242 Query: 235 EKPF--IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 +PF I D ++ AL W EL+ +S+VN IPT +GGTH G ++ + A+R Sbjct: 243 PEPFVLIQEELRDGARLEVALQWTEAPRELI-KSFVNGIPTTEGGTHEQGFKEAVRSAVR 301 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 + E ++LPR ++++A+DI + V+++ M +PQF GQTKE+L++ + + V G V+ Sbjct: 302 AYMETHDLLPRNLEVTADDIREGLVAVVNLFMVEPQFQGQTKEKLNNPEARSLVIGAVRL 361 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA----LPGKLADCTAQD 408 +LN + AE + I +A+ R+ + + S + LPGKLADCT+ + Sbjct: 362 DLEQFLNAHPTMAEAIVARIIQAAKARLASRAAARSVRRQSSVSHRLNLPGKLADCTSTN 421 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 ELF+VEGDSAGGSAKQARDR +QA++PL+GK+LN + S +V ++E+ +I A+ Sbjct: 422 PEECELFIVEGDSAGGSAKQARDRRFQAVLPLRGKVLNAEQASLRKVEENKELSNIVQAL 481 Query: 469 GID-PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 G D DLS+LRY KI +L DADSDG HI TLL F ++ R L+++GHVYVA PPLY Sbjct: 482 GCGIGDKIDLSRLRYHKIILLMDADSDGHHITTLLLTFFYRYMRPLIENGHVYVAQPPLY 541 Query: 528 RIDLGKEVYYALTEEEKEGVLEQL--KRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 RID GKE Y+AL + +++ +L++L KRK + +QRFKGLGEM P LRETTLDP RR Sbjct: 542 RIDAGKETYWALDDADRDRILQELRKKRKNVQVEIQRFKGLGEMMPDTLRETTLDPRKRR 601 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRS 612 L+++ I ++ T+ + L+ + S Sbjct: 602 LLRVEIPEDARLLTEQTITELMGRDVS 628 >UniRef50_Q2S2H3 Type II DNA topoisomerase, B subunit n=3 Tax=Bacteria RepID=Q2S2H3_SALRD Length = 643 Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust. Identities = 269/645 (41%), Positives = 386/645 (59%), Gaps = 17/645 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT-RP--NHLGQEVIDNSVDEALAGHAKRVDV 57 M TY + I+VL GLEPVR+RPGMY T RP +H+ EV+DN+VDEA G+A R++V Sbjct: 1 MPTTYTGEDIDVLEGLEPVRKRPGMYIGGTGRPGLHHILWEVVDNAVDEATNGYASRIEV 60 Query: 58 ILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 +LH D +S+ V D+GRG+PVD HPE+GVP V+LIL LH+GGKF NY SGGLHGVG+ Sbjct: 61 VLHEDGESISVSDNGRGIPVDDHPEKGVPTVQLILTTLHSGGKFDGSNYITSGGLHGVGV 120 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALS+ + V+RDGQ Y F G V L R TGT ++F PD F+S Sbjct: 121 SVVNALSEELVATVKRDGQEYQQRFRQGTPVTGLDTTKESA-RGTGTDIYFRPDPDIFES 179 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLP-- 234 F S + L K L ++I F+DE +N ++ G+ +YL V L P Sbjct: 180 VEFDPSWIREHLDVKTYLNRDLKIIFRDETSNERYELHHEGGIQEYLDYLVEDLQVSPIH 239 Query: 235 EKPFI--GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 + F+ + ++ AL W E L ++VN IPT GGTH GL+ G+ +R Sbjct: 240 DDVFMMEDDDLDGDGRLEIALQWTDAPKEQL-HTFVNGIPTEDGGTHEQGLKSGIRAVIR 298 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 F + +++P +++ +D + ++++ DPQF GQTK++L++ + VSG ++ Sbjct: 299 SFMDTHDLVPHRLEIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPSVRSQVSGALRT 358 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA----LPGKLADCTAQD 408 +LN + E +A + +A+ R SG LPGKLADC++ Sbjct: 359 ELEQYLNDHSSTGEAIASRVVQAAKARRARRSASGGSSGRSGSKSRLQLPGKLADCSSST 418 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 + ELF+VEGDSAGGSAKQARDRE QA++PL+GK+LN + + D V ++E+ +I A+ Sbjct: 419 PSECELFIVEGDSAGGSAKQARDRETQAVLPLRGKVLNAEQATLDRVQNNKELSNIVQAL 478 Query: 469 GID-PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 G D+ DLS LRY K+ +L DADSDG HIATLL F ++ R L++ G V++A PPLY Sbjct: 479 GCGIGDALDLSDLRYRKVILLMDADSDGHHIATLLLTFFYRYMRPLIEGGFVHIAQPPLY 538 Query: 528 RIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNV--QRFKGLGEMNPMQLRETTLDPNTRR 585 RI+ GKE ++AL E +KE +L++++ PNV QRFKGLGEM P L ETTL P RR Sbjct: 539 RIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNETTLSPEGRR 598 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 L++++I D + T+ + L+ + S + +Q + E++V Sbjct: 599 LLEVSIPDTERMVTEQTITELMGRDSSARFKFIMQHAAEADELDV 643 >UniRef50_B9ZQ26 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ26_9GAMM Length = 650 Score = 453 bits (1166), Expect = e-126, Method: Compositional matrix adjust. Identities = 262/649 (40%), Positives = 380/649 (58%), Gaps = 26/649 (4%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y +++I+VL GLEPVR+RPGMY TD++ HL E++DN+VDEA+AGH ++V+ Sbjct: 8 ARQYTSESIQVLEGLEPVRKRPGMYIGGTDSSGLRHLLNEILDNAVDEAIAGHGDEIEVV 67 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 H D S V D+GRG+P+D+H E+G+ A L++ LHAGGKF N Y+ SGGLHGVG +V Sbjct: 68 FHQDGSYSVNDNGRGIPIDMHREKGMHAAALLVTTLHAGGKFDNAAYKVSGGLHGVGAAV 127 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS-P 177 NA+S R ++++RRDGQ Y F G D ++ G TGT + FWPD FD Sbjct: 128 TNAMSTRFDMDIRRDGQRYQQTFTEGGAPSDPEIKRYTGSY-TGTLIRFWPDLARFDEDA 186 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNT---EQRWC------YQDGLNDYLAEAVN 228 + +K A L PG++++ ++E+ + E R + + D ++ + Sbjct: 187 EIDFDFMADRMKRTAYLVPGLQLSIREEVASEGGDEPRQAVFRFESFSQIIEDLSVDSGD 246 Query: 229 GLPTLPEKPFIGNFAGDTE-AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 + + E + G E V AL W +L Y N+IPT GTH+ GLR+ + Sbjct: 247 AISEIIEADSAEHIDGQGEIEVAVALRWHERNRTVLA-GYANIIPTAD-GTHMTGLRKAV 304 Query: 288 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 A+ + E N+L +L +DI ++V++ DP F GQTKE+L + VS Sbjct: 305 TQAVNNYAEANNLLRGNQELKGDDIQAGLIAAVAVRLADPLFQGQTKEKLKNGPVTGVVS 364 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK-----VVRKKLTSGPALPGKLA 402 ++ A +N + A + E A AQ+ AA K V RK + S ALPGKLA Sbjct: 365 RAIRAALDHAFEENPKMARAIVEKA-KLAQKAREAADKAAEMVVNRKSVISATALPGKLA 423 Query: 403 DCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVH 462 DC QD +++ELF+VEGDSAGGSAK R+REYQAI+PLKGKILNT+ +VL S EV Sbjct: 424 DCQEQDPSKSELFIVEGDSAGGSAKSGREREYQAILPLKGKILNTYRADPAKVLKSDEVK 483 Query: 463 DISVAIGIDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYV 521 ++ +A+G P S DL +LRY +I ILADADSDG HIATL+ F + L++ G+VY+ Sbjct: 484 NLMLALGCGPKSHFDLEKLRYHRIVILADADSDGHHIATLVLTYFHTNAPELIESGYVYI 543 Query: 522 ALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDP 581 ALPPLYR+ GK+ Y + E E + Q ++ K VQRFKGLGEMN QL E +DP Sbjct: 544 ALPPLYRVRKGKQSAYLKDDRELEAFMAQ-QKNPDKWQVQRFKGLGEMNAEQLWEAAMDP 602 Query: 582 NTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 TRR+ ++ ++ + + + ++L+ + RR +++E + A I+V Sbjct: 603 ETRRIARVQYSEQGREGDNEVFEVLMGAE-VPPRRAFIEEYAEKAVIDV 650 >UniRef50_P94281 DNA gyrase subunit B n=211 Tax=cellular organisms RepID=GYRB_BARBK Length = 692 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 262/644 (40%), Positives = 380/644 (59%), Gaps = 29/644 (4%) Query: 4 TYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 TYNA +I +L GLEPVR RPGMY TD+ +HL E+IDN++DEA+AG+A +D+ L Sbjct: 52 TYNASSIRILEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDITLD 111 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVP---AVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 ++ L V D+GRG+P++ HP+ +P +E+I+ LH+GGKF K YQ SGGLHGVGIS Sbjct: 112 SNNYLTVTDNGRGIPIENHPQ--IPDKSTLEVIMTHLHSGGKFDGKAYQTSGGLHGVGIS 169 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DS 176 VVNALS +EV V R+ ++Y F G L+ +G R GT V F PD F ++ Sbjct: 170 VVNALSDDMEVEVARERKLYRQRFSRGIPQSGLEELGDVYNRR-GTRVCFHPDSQIFGEN 228 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEI-------TFKDEINNTEQR-WCYQDGLNDYLAEAVN 228 F ++ + ++KA L GV+I KD N E+ + + DGL DYL+ ++ Sbjct: 229 TAFDPEKIYKIARSKAYLFNGVKIRWNCDPAALKDAKNIPEKDVFYFPDGLKDYLSLSLK 288 Query: 229 GLPTLPEKPFIGN---FAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 285 + + F G +G +V+WA+ W G+ +SY N IPT +GGTH GLRQ Sbjct: 289 NKHLVTAEIFSGKTQQLSGHG-SVEWAIAW--HNGDAYIQSYCNTIPTEEGGTHETGLRQ 345 Query: 286 GLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 345 LL ++ + E R ++++D+ +LSV ++DPQF GQTK+RL++ + Sbjct: 346 TLLRGLKAYAELIGN-KRASIITSDDVMASTVVMLSVFIKDPQFVGQTKDRLATTEAQRI 404 Query: 346 VSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM--RAAKKVVRKKLTSGPALPGKLAD 403 V ++D F WL + A L I A+ R+ R +++ RK LPGKLAD Sbjct: 405 VENAIRDPFDHWLANSPHEATKLLNWVIERAEERLKRRQDREINRKTAVRKLRLPGKLAD 464 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C+ ELF+VEGDSAGGSAKQAR+R QAI+PL+GKILN + +++ +SQ + D Sbjct: 465 CSQNSAAGAELFIVEGDSAGGSAKQARNRTNQAILPLRGKILNVASAAREKMSSSQTIAD 524 Query: 464 ISVAIGIDPDSDDLSQ-LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA 522 + +A+G S + LRY +I I+ DAD DG HIA+LL F + L++ GH+Y+A Sbjct: 525 LILALGCGTRSKYREEDLRYERIIIMTDADVDGAHIASLLITFFFQEIPDLIRAGHLYLA 584 Query: 523 LPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582 +PPLYRI G +V YA + K+ +L+ KGK + RFKGLGEM QL+ETT++P Sbjct: 585 VPPLYRISQGGKVAYARDDSHKDELLKTEFTGKGKIEIGRFKGLGEMRAEQLKETTMNPK 644 Query: 583 TRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 R L++++ID + Q T + L+ K E+R ++QE A Sbjct: 645 KRTLLRVSIDTFEMQETKETVQNLMGTK-PEERFRFIQESSTFA 687 >UniRef50_B8FXX0 DNA gyrase subunit B n=70 Tax=Bacteria RepID=B8FXX0_DESHD Length = 644 Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust. Identities = 247/628 (39%), Positives = 367/628 (58%), Gaps = 14/628 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVI 58 T YNA IEVL GLE VR+RPGMY +T +HL E++DNS+DEALAG+ ++V Sbjct: 13 TNDYNAGQIEVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGYCDTIEVT 72 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 +H D S+ V+D+GRG+PVDIHP+ G PAVE+ L LHAGGKFS Y+ SGGLHGVG+SV Sbjct: 73 IHKDNSISVVDNGRGIPVDIHPKLGKPAVEVALTVLHAGGKFSGSAYKVSGGLHGVGMSV 132 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS + V VR+DG +Y+ F G+ +L V+G TGT++ F PD F+ Sbjct: 133 VNALSTWLHVEVRKDGNIYHQEFMRGKTKTELAVIGQVDPNQTGTTITFSPDPEIFEDTV 192 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 F L H L+ + L V IT D + ++ + + G+ D++ +L +P Sbjct: 193 FLFDTLAHRLRELSFLNKKVSITLIDAREDKKEVYYHTGGIYDFVKYINRSKESLHPEPI 252 Query: 239 IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 D V+ ++ + E L SY N I T +GGTH +G + L ++ Sbjct: 253 YFEAEKDGVQVEVSMQYNDGYVENLF-SYANNIHTHEGGTHESGFKAALTRVANDYARKN 311 Query: 299 NILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 NIL LS EDI + V+SVK+ +PQF GQTK +L + + + V + + + Sbjct: 312 NILKANEANLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEIRSIVDSITGEGLSAF 371 Query: 358 LNQNVQAAELLAEMAISSAQRRMRAAKKVV---RKKLTSGPALPGKLADCTAQDLNRTEL 414 +N + + E +I +++ R A K RK ALPGKLADC+ ++ E+ Sbjct: 372 FEENPAIGKKVIEKSIQASRAREAARKARELTRRKSALEVSALPGKLADCSWKEAELCEM 431 Query: 415 FLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS 474 ++VEGDSAGGSAKQ RDR +QAI+PL+GKILN + D +L + E+ + A+G Sbjct: 432 YIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIRAMITAMGTGISE 491 Query: 475 D-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 D D+ + RY K+ I+ DAD DG HI LL F ++ + L+++ +VY+A PPL+++ GK Sbjct: 492 DFDIEKARYHKLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYIAQPPLFKVKKGK 551 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 +++Y + EE + +++ R + +QR+KGLGEMN QL ETT+DP R ++Q+T+ Sbjct: 552 DIHYVYSNEELAKLQDEIGRD--RVEIQRYKGLGEMNAEQLWETTMDPAKRTILQVTM-- 607 Query: 594 EDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 ED + D + +L+ E RR ++Q+ Sbjct: 608 EDAIKADELFTILMGDV-VEPRREFIQD 634 >UniRef50_P50028 DNA gyrase subunit B n=331 Tax=cellular organisms RepID=GYRB_MYCCT Length = 643 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 245/631 (38%), Positives = 377/631 (59%), Gaps = 22/631 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y+ AI+VL GLE VR+RPGMY TD +HL E++DN++DEALAG+ ++DVIL Sbjct: 5 KKYDESAIQVLEGLEAVRKRPGMYIGSTDNKGLHHLVWEIVDNAIDEALAGYCTQIDVIL 64 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D S+ VID+GRG+P +H + G P E+I LHAGGKF + Y+ SGGLHGVG SV Sbjct: 65 EKDNSITVIDNGRGIPTGMH-KTGKPTPEVIFSVLHAGGKFDSTAYKSSGGLHGVGSSVT 123 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQD-LQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 NALSKR + + RD +++ I F+NG K++ L + T K TGT+++F PD+T F + + Sbjct: 124 NALSKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFINTTYK--TGTTINFLPDDTIFSNAK 181 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 F+ S ++ LK A+L G++IT D I+N + +QDGL +++ E V+ + + Sbjct: 182 FNFSLISERLKESALLNSGLKITLSDLISNRYVEYQFQDGLVEFVKELVDDKTPVTDIIT 241 Query: 239 IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 I N + + V+ AL + + E++ + N + T+ GGTH+ G + GL+ A+ ++ + + Sbjct: 242 INNESKNI-IVEIALQYTEDDNEIIL-GFANNVKTIDGGTHLVGFKSGLIRAINDYAKDQ 299 Query: 299 NILPRGVKLSAEDIWDRCAYVLSVKMQDP--QFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 IL KL + D+ + +++VK+ + ++ GQTK +L + V +V + Sbjct: 300 KILKDKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQIVYEFMSY 359 Query: 357 WLNQNVQAAELLAEMAISSAQRRM-----RAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411 WL +N A + E A+++ + R+ R A K V+ K + GKL + Sbjct: 360 WLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLTPAQGKKREL 419 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 EL+LVEGDSAGGSAK RDR +QAI+PL+GK++N+ + ++L ++E+ I AIG Sbjct: 420 NELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQSIINAIGAG 479 Query: 472 PDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID 530 D D+S + YGKI I+ DAD+DG HI TLL F +H + L+ H VY+ALPPLY+I Sbjct: 480 VGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIIHKKVYIALPPLYKIT 539 Query: 531 LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLT 590 + + L +EE+ + KK + +QR+KGLGEMN QL +TT+DP R+++Q+T Sbjct: 540 FNDKSFIYLWDEEELNKFNKTNTKKYE--IQRYKGLGEMNADQLWQTTMDPKNRKIIQVT 597 Query: 591 IDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 I D + M L+ E R+ W+QE Sbjct: 598 I--SDGLLAERMFKTLMGDD-VEKRKLWIQE 625 >UniRef50_O50627 DNA gyrase subunit B n=82 Tax=cellular organisms RepID=GYRB_BACHD Length = 637 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/631 (40%), Positives = 376/631 (59%), Gaps = 21/631 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y+ I+VL GLE VR+RPGMY +T +HL E++DNS+DEA+AG + V++ Sbjct: 6 QAYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSIDEAMAGFCDEIGVVI 65 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D S+ V D+GRG+PV IH + G PAVE+I+ LHAGGKF Y+ SGGLHGVG SVV Sbjct: 66 EEDNSITVTDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 125 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDSPR 178 NALS +EV V R+G+V+ F G DL+V+GT + TGT +HF PD + F ++ Sbjct: 126 NALSTMLEVEVHREGKVHYQKFHRGVPAADLEVIGTTDR--TGTKIHFKPDGDIFTETTV 183 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKD-EINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 F L L+ A L G+ I D + Y+ G+ ++ TL E P Sbjct: 184 FEYDTLASRLRELAFLNKGLRIKITDMREEEKSDEFHYEGGIASFVEHLNRTRETLHETP 243 Query: 238 FIGNFAGDTEAVDWAL-LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 + G+ + V + + +G S+ N I T +GGTH +G + GL + ++ Sbjct: 244 I--HIEGEKQGVYVEIAVQYNDGFTSNIYSFANNINTHEGGTHESGFKTGLTRVINDYAR 301 Query: 297 YRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 N+ L+ ED+ + ++SVK+ DPQF GQTK +L + + + + F Sbjct: 302 KHNLFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFS 361 Query: 356 LWLNQNVQAAELLAEMAISSAQRRMRAAKK----VVRKKLTSGPALPGKLADCTAQDLNR 411 +L ++ Q A L + + +++ R AAKK RK +LPGKLADC+++D + Sbjct: 362 RFLIEHPQVARKLVDKGLMASRAR-EAAKKARELTRRKSALEVSSLPGKLADCSSRDASI 420 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 +E+++VEGDSAGGSAKQ RDR +QAI+PL+GKILN + D++LA+ E+ I A+G Sbjct: 421 SEIYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALGTG 480 Query: 472 PDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID 530 D D+ + RY KI I+ DAD DG HI TL+ F ++ R L++HG+VY+A PPLY++ Sbjct: 481 IGDDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQ 540 Query: 531 LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLT 590 GK++ YA + E + +L QL K KP +QR+KGLGEMNP QL ETT+DP R ++Q+T Sbjct: 541 QGKDIQYAYGDAELQEILSQLP-DKAKPGIQRYKGLGEMNPSQLWETTMDPGQRTVLQVT 599 Query: 591 IDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 + ED + D + ++L+ R E RR+++QE Sbjct: 600 L--EDAMKADEIFEILMG-DRVEPRRDFIQE 627 >UniRef50_B6BRC2 DNA gyrase subunit B n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BRC2_9RICK Length = 686 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 255/645 (39%), Positives = 369/645 (57%), Gaps = 61/645 (9%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 TY AD+I+VL GLE VR+RPGMY D T +H+ EV+DNS+DEALAGH K ++V Sbjct: 5 NTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNINVR 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 +++D ++ V DDGRG+PVD+H E A E+I+ +LHAGGKF + +Y+ SGGLHGVG+SV Sbjct: 65 INSDGTITVNDDGRGIPVDMHKGEKKSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVGVSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS+++++ + RDG+ + I F+NGE + L++VG +N+GT + F P + F S + Sbjct: 125 VNALSEKLKLEINRDGKKHFIEFKNGEAIAPLKIVGKS--KNSGTQITFLPSKEIFSSIK 182 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ-DG----LNDYLAEAVNGLPT- 232 FS + L ++ A L G++I F D E+ ++ DG ++L E L Sbjct: 183 FSANILIKRMRELAFLNKGIKIIFTDASLKKEKVSEFKFDGGVLEFVNFLDEKREKLQNK 242 Query: 233 ----LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288 L +KP D ++ +L W E + Y N I GGTH+ G R L Sbjct: 243 NGNDLFKKPIYIEGKKDNIELECSLKWNASYAEDIF-PYTNNIFQKDGGTHLLGFRSALT 301 Query: 289 DAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 + ++ N+L + + +S +DI + VLS K+ DP+F+ QTK++L S + V Sbjct: 302 RVVNKYANEHNLLKKNKLAISGDDIKEGLTCVLSTKIPDPKFSSQTKDKLVSSEVRMIVE 361 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTSGPALPGKLADC 404 VV + +W +QN A+++ I +A R +A + V RK LPGKLADC Sbjct: 362 TVVNEKLSIWFDQNPSVAKIILAKVIQAAMARDVARKARENVRRKGALELSGLPGKLADC 421 Query: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW---------------- 448 TELF+VEGDSAGGSAKQ R+R QA++PL+GKILNT+ Sbjct: 422 QIGKQEGTELFIVEGDSAGGSAKQGRNRANQAVLPLRGKILNTYVEDLSVKKNGNGDASE 481 Query: 449 ---EVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLC 503 + ++++S E+ + A+G+DP + DL LRYGKI I+ DAD DG HI LL Sbjct: 482 QQRTKALSKMISSNEIVTLINALGLDPKTQEIDLKDLRYGKIIIMTDADVDGSHIRALLL 541 Query: 504 ALF-VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEG---------------- 546 F K F L+++GHVY+A PPL++I+ G + Y E E E Sbjct: 542 TFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDELELENYIVKNSKELKKIKKGS 601 Query: 547 --VLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQL 589 +++L+ +K K N+QRFKGLGEMNP +L TTLDP R L+Q+ Sbjct: 602 KEYIKELELEKSKMNIQRFKGLGEMNPEELWSTTLDPENRNLLQV 646 >UniRef50_P43053 DNA gyrase subunit B n=78 Tax=Bacteria RepID=GYRB_MYCHP Length = 648 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 248/641 (38%), Positives = 369/641 (57%), Gaps = 26/641 (4%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 YNAD I++L GLE VR+RPGMY + +HL E++DNSVDEA+AG A + + L+ Sbjct: 10 YNADNIQILEGLEAVRKRPGMYIGSIGFKGLHHLLWEIVDNSVDEAMAGFATEIKIKLYP 69 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 + +EV D+GRGMP IH AVE IL LHAGGKF NY+ SGGLHGVG SVVNA Sbjct: 70 NNVIEVEDNGRGMPTGIHSGTKKSAVETILTVLHAGGKFDGSNYKVSGGLHGVGASVVNA 129 Query: 122 LSKRVEVNVRRDGQVYNIAFENGE-KVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 LS EV V+RDG+++ F NG V+ L+V+G + TGT++ F PD T + F Sbjct: 130 LSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDYTIMEKENFD 189 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL-PEKPFI 239 + K A L G++IT ++ N + +C++ GL DY+ E G + PE + Sbjct: 190 FDTIIDHSKQIAYLNKGLKITVENVEKNIIKVFCFEGGLIDYVKELNKGKKLIVPEVIYA 249 Query: 240 ------GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 NF + + + E SY N I T+ GGTH G L+ Sbjct: 250 EGVFNDKNFTNGQDVIVEVAMQYNEAYTNSIVSYANNIQTIDGGTHEQGFYDALVRIYNN 309 Query: 294 FCEYRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 + E + K++ ED+ + ++S+K DP F GQTK +L ++ + ++ D Sbjct: 310 YAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENKDARIATNKILSD 369 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSG---PALPGKLADCTAQDL 409 + +LN+N + A + E + S R+ K + +G LPGKLADC++++ Sbjct: 370 SLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNLPGKLADCSSKNA 429 Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 ELF+VEG+SAGGSAK RDR QAI+PL+GK++N + S VL+++E+ + A+G Sbjct: 430 EIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLSNKEIATMIHALG 489 Query: 470 IDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR 528 +++ D+++L+Y KI I+ DAD DG HI TLL F ++ + L+++G VY+A PPLY+ Sbjct: 490 TGINTEFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYGFVYLAQPPLYK 549 Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 I GK V YA + +KE ++ +L+ K+ +QR+KGLGEM+P QL ETT+DP TR+++Q Sbjct: 550 ITSGKNVEYAYNDLQKEQIMAKLEDKRNVA-IQRYKGLGEMDPEQLWETTMDPETRKMLQ 608 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSED---RRNWLQEKGDMA 626 + IDD A+ D + A E+ R +++QE A Sbjct: 609 VQIDDA------AICDTVFATLMGEEIEPRHDFIQENAKYA 643 >UniRef50_Q1V1K8 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1V1K8_PELUB Length = 685 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 255/643 (39%), Positives = 372/643 (57%), Gaps = 60/643 (9%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 TY AD+I+VL GLE VR+RPGMY D T +H+ EV+DNS+DEALAGH K +DV + Sbjct: 6 TYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNIDVKI 65 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 ++D ++ V DDGRG+PVD+H E + A E+I+ +LHAGGKF + +Y+ SGGLHGVG+SVV Sbjct: 66 NSDGTITVRDDGRGIPVDMHKGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVGVSVV 125 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS+++++ + RDG Y I F++G L+V+G + TGT + F P + F S +F Sbjct: 126 NALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKS--KETGTQITFLPSKEIFSSIKF 183 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ-DG----LNDYLAEAVNGLPT-- 232 + S + ++ A L G++IT D E+ ++ DG D+L E L Sbjct: 184 TPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIVFKFDGGVLEFVDFLDEKREKLVNKT 243 Query: 233 ---LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 L +KP D ++ +L W GE + Y N I GGTH+ G R L Sbjct: 244 GNDLFKKPIYIEGKKDNIEIECSLKWNASYGEDIY-PYTNNIYQKDGGTHLLGFRSALTR 302 Query: 290 AMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + ++ N+L + + +S +DI + V+S K+ DP+F+ QTK++L S + V Sbjct: 303 VINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDKLVSSEVRMIVES 362 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTSGPALPGKLADCT 405 +V + +W +QN ++++ + +A R +A + V RK LPGKLADC Sbjct: 363 IVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALELSGLPGKLADCQ 422 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW--EV------------- 450 TELF+VEGDSAGGSAKQ R+R QA++PL+GKILNT+ E+ Sbjct: 423 IGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIVLKKNSNRDGSEH 482 Query: 451 ---SSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCAL 505 S ++++S EV + A+G+DP + DL LRYGKI I+ DAD DG HI LL Sbjct: 483 RTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADVDGSHIRALLLTF 542 Query: 506 F-VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGV-------LEQLKR---- 553 F K F L+++GHVY+A PPL++I+ G + Y E+E E L+++K+ Sbjct: 543 FNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNNKELQKIKKGTKE 602 Query: 554 -------KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQL 589 +K + ++QRFKGLGEMNP +L TTLDP TR L+Q+ Sbjct: 603 FTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPETRNLLQV 645 >UniRef50_D0J983 DNA gyrase subunit B n=22 Tax=cellular organisms RepID=D0J983_BLASP Length = 642 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 239/642 (37%), Positives = 382/642 (59%), Gaps = 23/642 (3%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y AD+I+ L G+E +R RP MY +HL EVIDNSVDE+LAG+ ++ V +H Sbjct: 8 YTADSIQSLEGIEHIRLRPSMYIGDVGIRGLHHLVCEVIDNSVDESLAGYCNKIWVTIHK 67 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 + + V+D+GRG+P+DIH +EG A+E+++ ++ AGGKF +Y+ SGGLHGVGIS VNA Sbjct: 68 NGFITVLDNGRGIPIDIHKKEGKSALEVVMTKIGAGGKFDKNSYKVSGGLHGVGISCVNA 127 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LSKR+ V V R+G++Y + G + +Q +G + GT +H+ D + F+S + Sbjct: 128 LSKRLIVTVYRNGKIYQQEYLRGTPIDRVQCLGETHLQ--GTKIHYLADNSIFNSITYHY 185 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGN 241 L+ LK A L G+ + KDE NN E+ + ++GL +YL+ +L Sbjct: 186 EILSTRLKELAFLNKGLHLFLKDERNNIEEDFFSKNGLKEYLSILDKNQESLIRNIIFIE 245 Query: 242 FAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE----Y 297 + V+ A+ + E + SYVN I T +GGTH++G R+ L +++ + Sbjct: 246 GEKEDTIVEVAMQYNTSFKEKIY-SYVNNINTSEGGTHISGFRRALTRTFKKYTDGLLSN 304 Query: 298 RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 ++ V L+ +D + ++S+++ +PQF GQTK +LS+ + V +V + + Sbjct: 305 KDNKKDKVDLTGDDFREGLTAIISIRVMEPQFEGQTKTKLSNHEVGGIVDKIVGEMLNSY 364 Query: 358 LNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTEL 414 L +N + + I SA+ R A K + +K LPGKLADC+ + E+ Sbjct: 365 LEENPSERRKIIDKVILSAKARQAAKKARELIQKKSPIYNSILPGKLADCSFNNPENCEI 424 Query: 415 FLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI---- 470 +LVEGDSAGG+AKQ RDR +QAI+PL+GKILN + ++ ++E+ +I ++G+ Sbjct: 425 YLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMQYKIFENEEIRNIFTSLGVSIGT 484 Query: 471 --DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR 528 DP + ++ +LRY KI I+ DAD DG HI+TL+ LF ++ + L++ GH+Y+A PPLY Sbjct: 485 EEDPKNLNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKPLIEKGHIYIATPPLYL 544 Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 I G YA ++EE+E +L++L R+K K N+QR+KGLGEMN QL ETT++P R L + Sbjct: 545 IRKGNHSQYAWSDEEREKILQRLGRRK-KINIQRYKGLGEMNAEQLWETTMNPKKRTLRK 603 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 + I E+ D + +L+ ++ RR+++++ A+I+V Sbjct: 604 VHI--ENLSEADKIFSILMGEE-VPPRRSFIEKNAIHAKIDV 642 >UniRef50_C7QFM2 DNA gyrase subunit B n=8 Tax=Bacteria RepID=C7QFM2_CATAD Length = 661 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/640 (40%), Positives = 382/640 (59%), Gaps = 31/640 (4%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHA 61 YNAD+I VL GLE VR+RPGMY +T +HL E++DNSVDEA+AG+A ++V L A Sbjct: 18 YNADSISVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSVDEAMAGYADTIEVWLLA 77 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D ++V+D+GRG+PV I+ + G A+E+++ LHAGGKF + Y+ SGGLHGVG+SVVNA Sbjct: 78 DGGVKVVDNGRGIPVGINTKTGKSALEVVMTILHAGGKFGDGGYKVSGGLHGVGVSVVNA 137 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS RVEV V DG V+N +++G ++Q G +TGTS FW D F++ +S Sbjct: 138 LSSRVEVEVHTDGFVWNQVYKHGVPETEVQKGGPAA--DTGTSTIFWADVDIFETTVYSF 195 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEI-----NNTEQR---WCYQDGLNDYLAEAVNGLPTL 233 L+ + A L G+ I+ DE N EQR + + G+ D++ +N Sbjct: 196 ETLSRRFQEMAFLNKGLTISLTDERPEFRDENGEQRSVKYHAEGGIADFVRH-INSRKGE 254 Query: 234 PEKPFIGNFAGD----TEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 P P + +F G+ T A + AL W + E + ++ N I T GGTH G R L Sbjct: 255 PVHPNVIDFEGEDKDRTLAAEIALQWNSQYSESIY-TFANNINTHGGGTHEEGFRAALTT 313 Query: 290 AMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + ++ + +L + L+ EDI + ++SVK+ +PQF GQTK++L + + FV Sbjct: 314 LINKYARDQKLLKEKDDNLAGEDIREGLTTIVSVKLAEPQFEGQTKDKLGNPEAKTFVQR 373 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRM--RAAKKVVRKK-LTSGPALPGKLADCT 405 +V + WL +N A + I ++ RM R A+++ R+K L +LPGKL+DC Sbjct: 374 LVYEKLGEWLEENPNEAREVIRKTIQASTARMAARKARELTRRKGLLESSSLPGKLSDCQ 433 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 + D +TE+F+VEGDSAGGSA+ RD QAI+P++GKILN + D+VL + EV + Sbjct: 434 SNDPTKTEIFIVEGDSAGGSARSGRDPMTQAILPIRGKILNVEKARIDKVLQNTEVQALI 493 Query: 466 VAIGIDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALP 524 A+G D D+S+LRY KI ++ADAD DG HI TLL L + + LV+ GHVY+A P Sbjct: 494 SALGTGVHDDFDISRLRYHKIILMADADVDGAHINTLLLTLLFRFMKPLVEAGHVYLAAP 553 Query: 525 PLYRID-LGKEVYYALTEEEKEGVLEQ---LKRKKGKPNVQRFKGLGEMNPMQLRETTLD 580 PLY++ + YA ++ E++ +LE +++ VQRFKGLGEMN +LR TT+D Sbjct: 554 PLYKVKWTNNDFNYAYSDRERDQLLEAGVGAGKRRKDETVQRFKGLGEMNAEELRITTMD 613 Query: 581 PNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 R L Q+T+DD + D + +L+ + E RRN++Q Sbjct: 614 REHRILRQVTLDDA--AQADDLFSVLMGED-VEARRNFIQ 650 >UniRef50_D0RNK2 DNA topoisomerase IV, B subunit n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNK2_9RICK Length = 646 Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust. Identities = 241/651 (37%), Positives = 386/651 (59%), Gaps = 37/651 (5%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDV 57 +++TY+A IEVL GL PVR+RPGMY TD T +HL E++DNS+DEA+AG+AK + + Sbjct: 3 ISKTYSAKDIEVLEGLAPVRKRPGMYIGGTDETAYHHLANEILDNSIDEAVAGYAKEIVI 62 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 L ++ + DDGRG+P+D HP++ A+E+++ LH+GGKF++ Y+ S GLHGVG+S Sbjct: 63 KLVNKNTIIISDDGRGIPIDKHPKKKKTALEVVMTTLHSGGKFNDSVYKSSAGLHGVGLS 122 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDS 176 VVNALS ++ + V + ++Y+ + G+ + L+ G +N GT + F PD E F Sbjct: 123 VVNALSSKLNIQVTKSSKIYSQDYSKGKILNKLKTKGKNKIKN-GTQITFSPDPEIFGKD 181 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITF---KDEINN-----TEQRWCYQDGLNDYLAEAVN 228 F ++ + K KA L G++I++ KD +N +++ + GL D+L +N Sbjct: 182 VNFKPEKIYELAKNKAYLQKGIKISWECNKDLLNRKSSVPSKETLLFSKGLEDFLKNEIN 241 Query: 229 GLPTLPEKPFI--GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 L EK GN +++AL + E + +++ N + M GGTH G R G Sbjct: 242 QNNVLHEKVSFQSGNLEDKKGKIEFALQFNKEKIK-YNKAFCNTVYNMNGGTHDAGFRSG 300 Query: 287 LLDAMREFCEYRN--ILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAA 344 + ++R++ + +N I+ + + +DI+D+ AY++SV + +P+F GQTK +LSS Sbjct: 301 IAKSIRKYAKNKNNKIVSKATQ---DDIFDQAAYIISVYISNPEFEGQTKHKLSSNFVQK 357 Query: 345 FVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA------KKVVRKKLTSGPALP 398 + AF WLN+N +AA+ + ++ + ++R + V R+ LP Sbjct: 358 YCDSFASSAFDEWLNRNSKAAKNI----LNVLEEKIREKNIYDLNQNVERQSAFRKIRLP 413 Query: 399 GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAS 458 GKL+DCT+ TELF+VEGDSAGGSAKQARDR QAI+PL+GKILN ++ ++LA+ Sbjct: 414 GKLSDCTSDKTEGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVKSSNAAKILAN 473 Query: 459 QEVHDISVAIGIDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 E++++ A+G + LRY KI I+ DAD DG HI+TLL F+ L+ G Sbjct: 474 SEINNLLQALGCGRGKNYSKKDLRYEKIIIMTDADVDGDHISTLLLTFFISEMPQLILDG 533 Query: 518 HVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRET 577 H+Y+A+PPLY++++ + YA+ +E E KK K + RFKGLGEM P QL+ET Sbjct: 534 HLYLAVPPLYKLNISGKSTYAI--DESEKNKLLKDNKKAKIEISRFKGLGEMMPAQLKET 591 Query: 578 TLDPNTRRLVQ--LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 T++ TR+L++ L + ++T+ ++ L+ K +E R ++ E + + Sbjct: 592 TMNIETRKLIKVVLPVQKPKMKKTNKLVSDLMG-KNAELRLKFISENANKS 641 >UniRef50_Q9A0L0 DNA gyrase subunit B n=56 Tax=cellular organisms RepID=GYRB_STRP1 Length = 650 Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust. Identities = 262/646 (40%), Positives = 393/646 (60%), Gaps = 26/646 (4%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y+A I+VL GLE VR RPGMY +T +HL E++DNS+DEALAG A + V + Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 AD S+ V+DDGRG+PVDI + G PAVE + LHAGGKF Y+ SGGLHGVG SVV Sbjct: 73 EADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVV 132 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDSPR 178 NALS +++V V ++GQ++ F+ G V DL+V+GT TGT+VHF PD E F ++ + Sbjct: 133 NALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTT--DVTGTTVHFTPDPEIFTETTQ 190 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ--RWCYQDGLNDYLAEAVNGLPTLPEK 236 F S L ++ A L G++I+ D+ + EQ + Y+ G+ Y+ + + E Sbjct: 191 FDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFLYEGGIGSYVEFLNDKKDVIFET 250 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 P + + AV+ A+ + E + S+ N I T +GGTH G R L + ++ + Sbjct: 251 PIYTDGELEGIAVEVAMQYTTSYQETVM-SFANNIHTHEGGTHEQGFRAALTRVINDYAK 309 Query: 297 YRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 IL L+ ED+ + V+SVK +PQF GQTK +L + + + + +AF Sbjct: 310 KNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQ 369 Query: 356 LWLNQNVQAAELLAEMAISSAQRRMRA--AKKVVRKKLTSG---PALPGKLADCTAQDLN 410 +L +N Q A + E I +++ R+ A A++V RKK SG LPGKLADC++ D N Sbjct: 370 RFLLENPQVARKIVEKGILASKARIAAKRAREVTRKK--SGLEISNLPGKLADCSSNDAN 427 Query: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 + ELF+VEGDSAGGSAK R+RE+QAI+P++GKILN + + D++LA++E+ + A+G Sbjct: 428 QNELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGT 487 Query: 471 DPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 +D D+S+ RY K+ I+ DAD DG HI TLL L + R +++ G+VY+A PP+Y + Sbjct: 488 GFGADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGV 547 Query: 530 DLGKEVYYAL-----TEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTR 584 +G E+ + E++ + LE+ + KP VQR+KGLGEM+ QL ETT+DP R Sbjct: 548 KVGSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENR 607 Query: 585 RLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 + ++T+DD + D + DML+ R E RR++++E + +++ Sbjct: 608 LMARVTVDDAAE--ADKVFDMLMG-DRVEPRRDFIEENAVYSTLDI 650 >UniRef50_P21558 DNA gyrase subunit B n=61 Tax=cellular organisms RepID=GYRB_HALSQ Length = 639 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/641 (39%), Positives = 373/641 (58%), Gaps = 30/641 (4%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y A I+VL GLE VR+RP MY TD+ +HL EV+DNS+DEALAGH ++V LH Sbjct: 7 YGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIEVALHE 66 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S+ V D+GRG+PV H + PA+E+I+ LHAGGKF NK+YQ SGGLHGVG++VVNA Sbjct: 67 DGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGKFDNKSYQVSGGLHGVGVTVVNA 126 Query: 122 LSKRVEVNVRRDGQVYNIAFENG-------EKVQDLQVVGTCGKRNTGTSVHFWPDETFF 174 LS +EV V+ DG V+ FE G E+V+DL+ +TGT++ FWPD+ F Sbjct: 127 LSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEP-----GEDTGTTIRFWPDDGIF 181 Query: 175 DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLP 234 ++ F L + L+ A L GVEI+ DE + + ++ G+ +++ E +N T Sbjct: 182 ETTEFDFKTLENRLRELAFLNSGVEISLSDERTDESSTFLFEGGIREFV-EYLNETKTAL 240 Query: 235 EKPFIGNFAGDTEAVDWAL-LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 I + ++E ++ + + + + ++ N I T +GGTH+ G + L + + Sbjct: 241 HDDVI-YYDDESEGIEVEIAMQATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVND 299 Query: 294 FCEYRNILP--RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 351 + ++L G L ED+ + V+SVK DPQF GQTK +L + + V V Sbjct: 300 YANSHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESVTH 359 Query: 352 DAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQD 408 + +N A + A+ +A+ R A + RK +LPGKLADC ++D Sbjct: 360 QQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSRD 419 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 + +ELF+VEGDSAGGSAKQ RDR++QAI+PLKGKILN + D +L + E+ + AI Sbjct: 420 PSESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITAI 479 Query: 469 GID-PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 G D D+ + RY ++ ++ DAD DG HI TLL L +H R L++ G+VY A PPLY Sbjct: 480 GGGVGDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLY 539 Query: 528 RIDLGKEVYYALTEEEKEGVLEQLKRKKGKPN-VQRFKGLGEMNPMQLRETTLDPNTRRL 586 R+ Y A+ E E++ ++E+ G P VQRFKGLGEMNP QL +TT++P R L Sbjct: 540 RVRYRGNTYDAMDEAERDRIIEE--ECNGNPTQVQRFKGLGEMNPDQLWDTTMNPENRVL 597 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 ++T+ ED D M ++L+ R+ ++++ + AE Sbjct: 598 KRITV--EDAAAADRMFNILMGDAVGP-RKQFIKDHANDAE 635 >UniRef50_Q2NJM1 DNA gyrase subunit B n=5 Tax=Mollicutes RepID=Q2NJM1_AYWBP Length = 671 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 256/679 (37%), Positives = 385/679 (56%), Gaps = 60/679 (8%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVIL 59 + YNAD+I++L GLE VR+RPGMY +T +HL E++DNS+DEALAGHA + + + Sbjct: 2 KNYNADSIQILEGLEAVRKRPGMYIGSTAQKGLHHLVWEIVDNSIDEALAGHANNITLEI 61 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + + V D+GRG+PVDIHP+ G PAVE IL LHAGGKF + +Y+ SGGLHGVG SVV Sbjct: 62 LPGEIISVSDNGRGIPVDIHPKTGKPAVETILTTLHAGGKFDSSSYKVSGGLHGVGASVV 121 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDSPR 178 NALS V +R + Q+Y +E G V L+V+G KR GT++ F D E F ++ Sbjct: 122 NALSNWFTVEIRLNKQIYFQKYEKGIAVSPLEVIGGTNKR--GTTIQFLSDPEIFQETTI 179 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ--RWCYQDGLNDYLAEAVNGLPTLPEK 236 ++ L ++ + L G+++ D+ E +C++ GL DY+ + +N + + Sbjct: 180 YNFDTLKERMQQLSFLNKGLKLKIADKRYEKETVFNFCHEKGLQDYI-DFIN--TSHKQI 236 Query: 237 PFIGNFAGDTEAVDWALLWLPE-------------GGELLTE----------------SY 267 PF F + EA A + E G E+ + S+ Sbjct: 237 PFHEIFYLEKEAQKLAFEIVFEYTTQLRPTKKDEQGNEIEEKEDKDTIPRYTQSQKIFSF 296 Query: 268 VNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDP 327 VN IPT +GGTH G + L + ++ + N+L + L +EDI + ++S+K QDP Sbjct: 297 VNNIPTHEGGTHEEGFKLALTRVISKYAKEFNLLKKDEHLLSEDILEGITAIISLKHQDP 356 Query: 328 QFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA--AKK 385 QF GQTK +L++ + S + + +L ++ Q + + + + SA R+ A A++ Sbjct: 357 QFEGQTKAKLANTEVRQITSQLFGEFLEKYLLEHPQDSRKIIDKCLLSANARLAAKRARE 416 Query: 386 VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKIL 445 VVR K KLADC ++D + +EL++VEGDSAGGSAKQ RD +QAI+PL+GK+L Sbjct: 417 VVRNKPLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGKVL 476 Query: 446 NTWEVSSDEVLASQEVHDISVAIG----IDPDSD-DLSQLRYGKICILADADSDGLHIAT 500 N + ++L ++E+ + AIG I D ++ ++RY KI I+ DAD DG HI T Sbjct: 477 NVEKSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNVDKIRYHKIIIMTDADVDGAHIRT 536 Query: 501 LLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEV-YYALTEEEKEGVLEQLKRKKGKPN 559 LL F +HFR L++ G++Y A PPLY+ GK Y E+ K+ + K G Sbjct: 537 LLLTFFFRHFRELIEKGYIYFARPPLYKYQKGKGTPKYFYDEKTKQTFANKNSLKDG--- 593 Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI--------DDEDDQRTDAMMDMLLAKKR 611 QR+KGLGEMNP QL ETT+DP R L++ ++ D+E TD +ML+ +K Sbjct: 594 FQRYKGLGEMNPNQLWETTMDPENRTLLKASLKDALNALSDEEALMETDQTFNMLMGEK- 652 Query: 612 SEDRRNWLQEKGDMAEIEV 630 R+N++ EK A+++V Sbjct: 653 VLPRKNFILEKALEADLDV 671 >UniRef50_B6GDL9 DNA gyrase subunit B n=2 Tax=Collinsella RepID=B6GDL9_9ACTN Length = 674 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 250/639 (39%), Positives = 363/639 (56%), Gaps = 56/639 (8%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y + I+VL GLE VR RPGMY T +T +HL E++DNSVDEA+AG +++V +H Sbjct: 7 YGGNEIKVLEGLEAVRVRPGMYIGSTSSTGLHHLVWEIVDNSVDEAMAGFCTKIEVTVHP 66 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S+ V+D+GRG+PVD HP + +P +E+++ LHAGGKF N Y+ SGGLHGVG+SVVNA Sbjct: 67 DNSITVVDNGRGIPVDEHPVKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVGVSVVNA 126 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LSK++ V VRRDG +Y + F G+ Q ++ +GT TGT+ FWPDE F++ + Sbjct: 127 LSKKMNVQVRRDGHIYEMEFSRGKTTQKMREIGT--SETTGTTTTFWPDEEIFETTVYDY 184 Query: 182 SRLTHVLKAKAVLCPGVEITFKDE--INNTEQRWCYQDGLNDYLAEAVNGLPTLPE---K 236 L L+ A L ++I KDE + + +CY G+ D++ + +N T+PE Sbjct: 185 DILRTRLQQTAFLNKNLKIVLKDERTADPLVEEFCYAGGIVDFV-KFLNEGKTVPEGLKH 243 Query: 237 PFIGNFAGDTEA---------VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 P +G++E V+ A+ W E + S+ N I T++GG H+ G R L Sbjct: 244 PIY--LSGESEPGAPVEKIGEVEVAIQWNTSYSENVV-SFANDIRTIEGGMHMEGFRAAL 300 Query: 288 LDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 + ++ NIL + L+ +DI + V+SVK+ DPQF GQTK +L S Sbjct: 301 TSVINDYARKNNILKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGSSFMRTLT 360 Query: 347 SGVVKDAFILWLNQNVQAAELLAEMA--ISSAQRRMRAAKKVVRKK-LTSGPALPGKLAD 403 VV + +L ++ + A + + A S A+ R A++ R+K L +LPGKLAD Sbjct: 361 RKVVSEGLADFLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETASLPGKLAD 420 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C+ +D TELF+VEGDSAGGSAK R R+ QAI+PL+GKILN V +S+ + Sbjct: 421 CSVRDAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSSETIQS 480 Query: 464 ISVAIGI-------DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516 + AIG D D+++ RY KI I+ DAD DG HI LL F K+ R L+ Sbjct: 481 LITAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMRPLIDA 540 Query: 517 GHVYVALPPLYRIDLGKEVYYALT----------------------EEEKEGVLEQLKRK 554 G+VYVA PP++ I + +++Y E + E ++ +K Sbjct: 541 GYVYVACPPIFGIKVRNKIHYVYPNGRQAEDEILRDSIKALGLNPDEADDEQANGKVTKK 600 Query: 555 KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 + VQR+KGLGEM+P QL TT+DP TR L ++TI+D Sbjct: 601 RKGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTIED 639 >UniRef50_Q9X3Y6 DNA gyrase subunit B n=840 Tax=cellular organisms RepID=GYRB_BACAN Length = 640 Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust. Identities = 248/628 (39%), Positives = 376/628 (59%), Gaps = 17/628 (2%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILH 60 +Y+ I+VL GLE VR+RPGMY +T +HL E++DNS+DEALAG+ ++V + Sbjct: 10 SYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSIE 69 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 D S+ V D+GRG+PV I + G PAVE+I+ LHAGGKF Y+ SGGLHGVG SVVN Sbjct: 70 EDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVVN 129 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDSPRF 179 ALS +EV V R+G+++ +E G V DL+V+G + TGT F PD E F ++ + Sbjct: 130 ALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTDQ--TGTITRFKPDPEIFQETTVY 187 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR-WCYQDGLNDYLAEAVNGLPTLPEKPF 238 L ++ A L +++T +D+ + +++ + Y+ G+ Y+ + E+P Sbjct: 188 EFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPV 247 Query: 239 IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 + D V+ +L + EG S+ N I T +GGTH G + L + ++ Sbjct: 248 YVEGSKDGIQVEVSLQY-NEGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRKN 306 Query: 299 NILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 +IL L+ ED+ + ++S+K +PQF GQTK +L + + V +AF + Sbjct: 307 SILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEKF 366 Query: 358 LNQNVQAAELLAE---MAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTEL 414 L +N A + E MA + +A + RK +LPGKLADC+++D +E+ Sbjct: 367 LLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISEI 426 Query: 415 FLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS 474 ++VEGDSAGGSAKQ RDR +QAI+PLKGKI+N + D++L++ EV I AIG + Sbjct: 427 YIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIGG 486 Query: 475 D-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 D D+ + RY K+ I+ DAD DG HI TLL F ++ R +++HG++Y+A PPL+++ GK Sbjct: 487 DFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGK 546 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 ++ YA E+E E +L +L + KP +QR+KGLGEMNP QL ETT+DP R L+Q+++ D Sbjct: 547 KIQYAYNEKELEKILAELPAQP-KPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQD 605 Query: 594 EDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 + D ++L+ K E RRN++QE Sbjct: 606 AIE--ADETFEILMGDK-VEPRRNFIQE 630 >UniRef50_Q2FUD6 DNA gyrase subunit B n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FUD6_METHJ Length = 675 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 241/639 (37%), Positives = 364/639 (56%), Gaps = 50/639 (7%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDV 57 ++ TYN++ I++L GLEPVR RP MY TD+ +HL EV+DNS+DEALAG+ + V Sbjct: 6 LSNTYNSENIKILRGLEPVRERPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGYCTHIQV 65 Query: 58 ILHADQSLEVIDDGRGMPVD-IHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 ++H D S+ V D+GRG+P+D + + A+E +L LHAGGKF YQ SGGLHGVG+ Sbjct: 66 VIHQDGSVSVEDNGRGIPIDPMKDNDNKTALETVLTVLHAGGKFDKNTYQVSGGLHGVGV 125 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQ-------------------VVGTCG 157 SVVNALS + V +DG Y + F G+ DL+ + C Sbjct: 126 SVVNALSVELTATVWKDGYEYRMFFSRGQPQTDLEKKEEDFEEIKDRYIKRYGSLPDNCP 185 Query: 158 K-----------RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE- 205 + + +GT + F PD F++ F L H L+ A L G+ I+ DE Sbjct: 186 ETKEEFLNRYLSKISGTMIRFKPDSKIFETIEFDYDILAHRLRELAFLNSGITISIADER 245 Query: 206 ---INNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEA---VDWALLWLPEG 259 + + + Y+ G+++Y+ +N + I D EA VD A + Sbjct: 246 CEDLEECSEVFSYEGGISEYV-RYLNHEAQPIHESVISFSRKDEEARVEVDIAFQYAAAY 304 Query: 260 GELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC-EYRNILPRGVKLSAEDIWDRCAY 318 E + +YVN + T +GGTH+ G R L A+ + E + I + + L +D+ + Sbjct: 305 SEKVY-TYVNSVNTKEGGTHLEGFRSALTKAINKMGKENKAIKDQNLSLKGDDVREGLTA 363 Query: 319 VLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQR 378 ++SV+M +PQF GQTK +L + + V +V + + ++ + + + A+ + Q Sbjct: 364 IISVRMANPQFEGQTKMKLGNSEVKGIVDSLVYASLCEYFEEHPKELAAIVDKAVLAYQA 423 Query: 379 R--MRAAKKVVRKKLT-SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQ 435 R R AK++ R+K T LPGKLADC+ + ++E+++VEGDSAGGSAKQ RDR +Q Sbjct: 424 REAARKAKELARRKSTLESSGLPGKLADCSERSAEKSEIYIVEGDSAGGSAKQGRDRRFQ 483 Query: 436 AIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID-PDSDDLSQLRYGKICILADADSD 494 AI+PL+GKILN + + ++L + E+ + AIG +S D+ + RY I I+ DAD D Sbjct: 484 AILPLRGKILNVEKATVHKILKNNEIQALISAIGTGVGESFDIEKARYHHIIIMTDADVD 543 Query: 495 GLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRK 554 G HI+TLL F ++ + L++ G++Y+A PPLYRI GK+ YA TEEE + +L+++ K Sbjct: 544 GAHISTLLMTFFFRYLQPLIEAGYIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMGEK 603 Query: 555 KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 NVQR+KGLGEMN QL TT+DP TR L ++ I+D Sbjct: 604 --GVNVQRYKGLGEMNASQLWATTMDPETRVLKRVVIED 640 >UniRef50_Q9ZLX3 DNA gyrase subunit B n=50 Tax=Epsilonproteobacteria RepID=GYRB_HELPJ Length = 773 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 227/544 (41%), Positives = 339/544 (62%), Gaps = 13/544 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y + +I+VL GLE VR+RPGMY T+ +H+ EV+DN+VDE++AG +++ L Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + S V D+GRG+PVDIHP E +PA ++L LHAGGKF N Y+ SGGLHGVG+SVV Sbjct: 62 TEEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVV 121 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG-TCGKRNTGTSVHFWPDETFFDSPR 178 NALSKR+ + ++++GQ+Y FE G + +L+++G T + +GT++ F+PDE+ + Sbjct: 122 NALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVVE 181 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 F L K A L G++I+FK+E ++ + Y+DGL ++ ++ P F Sbjct: 182 FQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYKDGLKQFVKDSAKKELLTPIIAF 241 Query: 239 IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 +++ AL + + E T S+VN I T +GGTH G + GL A+ ++ + Sbjct: 242 KSMDEETRTSIEVALAYADDYNEN-TLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID-N 299 Query: 299 NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWL 358 NI + + +EDI + V+S+KM +P F GQTK +L S A VS +V D +L Sbjct: 300 NIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFL 359 Query: 359 NQNVQAAELLAEMAISSAQRR--MRAAKKVVRKK--LTSGPALPGKLADCTAQDLNRTEL 414 +N A+++A A+ +A+ R + A+++ RKK L+ G LPGKLADC ++D +E+ Sbjct: 360 EENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVG-TLPGKLADCQSKDPLESEI 418 Query: 415 FLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID-PD 473 FLVEGDSAGGSAKQ RDR +QAI+PLKGKILN + ++L S+E+ ++ A G + Sbjct: 419 FLVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQE 478 Query: 474 SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 S D+ +LRY KI I+ DAD DG HI TLL F ++ R L++ GHV++A PLY+ GK Sbjct: 479 SFDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYKKGK 538 Query: 534 -EVY 536 E+Y Sbjct: 539 TEIY 542 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 4/67 (5%) Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 KKG N+QR+KGLGEMNP L ETT+ R L++L I ED ++TDA+ + + + E Sbjct: 700 KKG-ANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKI--EDLEKTDAVFSLCMGDE-VE 755 Query: 614 DRRNWLQ 620 RR ++Q Sbjct: 756 PRRAFIQ 762 >UniRef50_A5TY73 DNA gyrase subunit B n=542 Tax=Bacteria RepID=GYRB_MYCTA Length = 675 Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust. Identities = 247/636 (38%), Positives = 367/636 (57%), Gaps = 54/636 (8%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y A +I +L GLE VR+RPGMY +T +HL EV+DN+VDEA+AG+A V+V+L Sbjct: 12 YGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGYATTVNVVLLE 71 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D +EV DDGRG+PV H G+P V++++ +LHAGGKF + Y SGGLHGVG+SVVNA Sbjct: 72 DGGVEVADDGRGIPVATHAS-GIPTVDVVMTQLHAGGKFDSDAYAISGGLHGVGVSVVNA 130 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS R+EV ++RDG ++ +E E + Q T + TG++V FW D F++ + Sbjct: 131 LSTRLEVEIKRDGYEWSQVYEKSEPLGLKQGAPT---KKTGSTVRFWADPAVFETTEYDF 187 Query: 182 SRLTHVLKAKAVLCPGVEITFKDE------------------INNTEQR----------- 212 + L+ A L G+ I DE + +R Sbjct: 188 ETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKVK 247 Query: 213 ---WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEA--VDWALLWLPEGGELLTESY 267 + Y GL D++ +N + +F+G V+ A+ W E + ++ Sbjct: 248 SRTFHYPGGLVDFVKH-INRTKNAIHSSIV-DFSGKGTGHEVEIAMQWNAGYSESV-HTF 304 Query: 268 VNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQD 326 N I T +GGTH G R L + ++ + R +L + L+ +DI + A V+SVK+ + Sbjct: 305 ANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSE 364 Query: 327 PQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM--RAAK 384 PQF GQTK +L + + +FV V + W N A+++ A+SSAQ R+ R A+ Sbjct: 365 PQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKAR 424 Query: 385 KVVRKK-LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGK 443 ++VR+K T LPGKLADC + D ++EL++VEGDSAGGSAK RD +QAI+PL+GK Sbjct: 425 ELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGK 484 Query: 444 ILNTWEVSSDEVLASQEVHDISVAIGID-PDSDDLSQLRYGKICILADADSDGLHIATLL 502 I+N + D VL + EV I A+G D D+ +LRY KI ++ADAD DG HI+TLL Sbjct: 485 IINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADADVDGQHISTLL 544 Query: 503 CALFVKHFRALVKHGHVYVALPPLYRIDLGK-EVYYALTEEEKEGVLEQLKRKKGKPN-- 559 L + R L+++GHV++A PPLY++ + + +A ++ E++G+LE + K N Sbjct: 545 LTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKE 604 Query: 560 --VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 +QR+KGLGEM+ +L ETT+DP+ R L Q+T+DD Sbjct: 605 DGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDD 640 >UniRef50_D0RQH0 DNA gyrase subunit B n=2 Tax=Bacteria RepID=D0RQH0_9RICK Length = 834 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 237/582 (40%), Positives = 342/582 (58%), Gaps = 38/582 (6%) Query: 5 YNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y AD+I+VL GL+ VR+RPGMY D T +H+ EV+DN++DEALAGH + V ++ Sbjct: 11 YGADSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDTIVVKIN 70 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 D S+ V D+GRG+PV+IH E + A E+I+ +LHAGGKF +K Y+ SGGLHGVG+SVVN Sbjct: 71 KDNSVSVSDNGRGIPVEIHKTEKISAAEVIMTQLHAGGKFDHKTYKVSGGLHGVGVSVVN 130 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALSK ++V++ RDG+ Y + FENG L+ +G + GT+V F P F +F+ Sbjct: 131 ALSKSLKVDIFRDGKKYFVEFENGITKAPLKEIGKSDLK--GTNVTFLPSSEIFTDTKFN 188 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQ--RWCYQDGLNDYLAEAVNGLP------- 231 +S L LK A L G+ I DE + + + G+ +++ + +N L Sbjct: 189 LSILEKRLKELAYLNKGLNIQLSDERKEKAKILNFKFDGGIKEFVKD-LNKLKNKIKNED 247 Query: 232 ---TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288 TL E + + D + V+ ALLW E + + N IP GGTH+ G R + Sbjct: 248 SQFTLEEPLYFQSNKNDID-VECALLWNSSYNENVL-CFTNNIPQKDGGTHLLGFRNSIT 305 Query: 289 DAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 + ++ +L + V + +D+ + VLSVK+ DP+F+ QTKE+L S + V Sbjct: 306 RLINKYANDFGLLKKDKVTIVGDDVREGLICVLSVKVPDPKFSSQTKEKLVSSEVRPVVE 365 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTSGPALPGKLADC 404 + + LW +QN + A+ + I +A R +A + V RK +LPGKLADC Sbjct: 366 TITNEKISLWFDQNPKIAKTIIGKIIQAAVAREVARKARESVRRKNAIDITSLPGKLADC 425 Query: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD----------E 454 + D+N+TELF+VEGDSAGGSAKQAR+RE+QA++PL+GKILNT+ + + + Sbjct: 426 QSNDINKTELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTFVEAKNNSPDVKKVFSK 485 Query: 455 VLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALF-VKHFRAL 513 +L+S E+ + AIG + +L +LRYGKI I+ DAD DG HI TLL F K F L Sbjct: 486 MLSSNEIVTLINAIGTGVEPFELEKLRYGKIVIMTDADVDGSHIRTLLLTFFNNKPFNEL 545 Query: 514 VKHGHVYVALPPLYRIDLGKEVYYALTEE--EKEGVLEQLKR 553 +K GH+Y+A PPLY+I GK V Y E EK + LK+ Sbjct: 546 IKKGHIYIAQPPLYKIKSGKTVNYLKNENDLEKLAIENSLKK 587 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 2/37 (5%) Query: 556 GKPNV--QRFKGLGEMNPMQLRETTLDPNTRRLVQLT 590 GK N+ QRFKGLGEMNP +L ETTL+P L+++ Sbjct: 752 GKKNLSLQRFKGLGEMNPDELWETTLNPENNSLLKVN 788 >UniRef50_C7M118 DNA gyrase subunit B n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M118_ACIFD Length = 647 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/632 (40%), Positives = 352/632 (55%), Gaps = 23/632 (3%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILH 60 +Y A I VL GLE VR RPGMY +T P +HL EV+DN+VDE +AG +DV + Sbjct: 15 SYTAADIVVLEGLEHVRLRPGMYIGSTGPSGLHHLVWEVVDNAVDEVMAGACTEIDVTIL 74 Query: 61 ADQSLEVIDDGRGMPVDIHPEE-GVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 AD V D+GRG+PVD HP + A E++L +L+AGGKF Y+ SGGLHGVG+SVV Sbjct: 75 ADGGCRVEDNGRGIPVDPHPSDPSKSAAEVVLTQLNAGGKFGTGGYKVSGGLHGVGVSVV 134 Query: 120 NALSKRVEVNVRRDGQVYNIAF-ENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 NALS R+ + V RDG Y + F + G L+ +G+ G R GT V FWPD T F+ Sbjct: 135 NALSARLVLEVHRDGSTYRMEFVKGGTPTGPLERIGSSGGRR-GTVVTFWPDPTIFEDTE 193 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEI--NNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 FS R+ L+ A L GV + F+DE EQ + Y G+ D++ P P Sbjct: 194 FSAQRILERLQVIAFLNKGVVVRFRDERPGREHEQTFSYAGGIVDFVRHLNE--PKGPLF 251 Query: 237 PFIGNFAGDTE--AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 +G +A E V+ A W E L ++ N I T +GG H G R+ L + + Sbjct: 252 AKVGYYAASEEDMEVEVAFSWNTTFYETLF-TFANGISTEEGGMHAEGFRKALTQVINRY 310 Query: 295 CEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 RN+L R L DI + ++SV++ +PQF GQTK +L + +FV V + Sbjct: 311 ARARNLLKERDENLEGNDIREGMTTIVSVRLVNPQFEGQTKTKLGNVSVRSFVERVTNEH 370 Query: 354 FILWLNQNVQAAELLAEMAI---SSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLN 410 WL +N + A+ + + AI + +A + RK LPGKL DCT++D + Sbjct: 371 LATWLEENPREAQAIVQKAIVAQRARLAARQARELTRRKSGLESAGLPGKLTDCTSRDPS 430 Query: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 +ELF+VEG+SAGG+ + RD + QA++P++GKILN D++L++QE+ + AIG Sbjct: 431 ESELFIVEGNSAGGTTIKGRDPKTQAVLPIRGKILNVERARLDKMLSNQEIQSLIAAIGA 490 Query: 471 D-PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 D D+ + RY K+ ILADAD DG HI TLL F + R LV+ G VY A PPLY Sbjct: 491 GVGDEFDIKKARYHKVIILADADPDGSHIRTLLLTFFFRQMRPLVEAGMVYAAQPPLYST 550 Query: 530 DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQL 589 LG E Y E E+ LE K KP + R KGLGEM+ +LR+TTL + R L+++ Sbjct: 551 LLGTEKVYIKNEAERLRFLEAHPNHK-KPFL-RLKGLGEMDFDELRDTTLHQDRRTLLKV 608 Query: 590 TIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 TI E D + +L+ E RR ++QE Sbjct: 609 TI--EQAAIADEVCSVLMGDD-VEQRRRFIQE 637 >UniRef50_D0LFL2 DNA gyrase subunit B n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFL2_HALO1 Length = 821 Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust. Identities = 230/563 (40%), Positives = 334/563 (59%), Gaps = 18/563 (3%) Query: 5 YNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+AD+I VL GLE VR+RPGMY D + +H+ EV+DN+VDEALAG+ RVD+ +H Sbjct: 15 YDADSITVLKGLEAVRKRPGMYIGDTDDGSGLHHMVHEVVDNAVDEALAGYCDRVDITIH 74 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 +D S+ V D+GRG+PV +H +EG PA EL++ LHAGGKF+ +Y+ SGGLHGVG+SVVN Sbjct: 75 SDNSITVEDNGRGIPVAVHKDEGRPAAELVMTVLHAGGKFNQNSYKVSGGLHGVGVSVVN 134 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS+ +++ +RR+G+VY + G V DL+ GT +R GT + F PD F FS Sbjct: 135 ALSRTLKLEIRREGKVYFQEYRQGIPVSDLRSTGTTDRR--GTKITFLPDPEVFKQTEFS 192 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAE-AVNGLPTLPEKPFI 239 L+ + + L G+ I DE + +Q +CY+ G+ ++A+ N P F Sbjct: 193 FGALSQRFRELSYLNSGLTIAITDERESQQQVFCYEGGMASFVADLNANKNPVTEVVAFT 252 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 G T VD A+ W E + + N I GGTH+ G RQGL + + Sbjct: 253 DEREGVT--VDIAMQWNDSYAEQIN-CFTNTIKNKDGGTHLTGFRQGLTRTVNAYAAENK 309 Query: 300 ILP--RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 +L +G LS ED+ + V+SVK+ DP+F+ Q K++L S + A V+ VV D + Sbjct: 310 LLKELKGNNLSGEDLREGLVAVISVKVADPKFSNQPKDKLVSSEVAGAVAAVVNDKLQSF 369 Query: 358 LNQNVQAAELLAE---MAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTEL 414 N + A + + +A + +A + V RK +LPGKLADC +D ++ EL Sbjct: 370 FEHNPKDARSIIQKAVVAARARDAARKAREMVQRKGALEYTSLPGKLADCQERDPSKCEL 429 Query: 415 FLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GIDP 472 F+VEG+SAGGSAKQ RDRE+QAI+PLKGKILN D++L+SQE+ + A+ GI P Sbjct: 430 FIVEGESAGGSAKQGRDREFQAILPLKGKILNVERARMDKMLSSQEIVTLITALGCGIGP 489 Query: 473 DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG 532 + D+ +LRY +I I+ DAD DG HI TLL F + + ++++ H+Y+A PPL+++ G Sbjct: 490 EK-DMGRLRYHRIVIMTDADVDGSHIRTLLLTFFFRQYPEIIENNHLYIAQPPLFKVKRG 548 Query: 533 KEVYYALTEEEKEGVLEQLKRKK 555 K Y E E + L K+ Sbjct: 549 KSETYLKNEHSLEDYVLDLVSKE 571 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 525 PLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTR 584 P + G+++ T +E +E + RK ++QR+KGLGEMN QL +TT+ P+ R Sbjct: 720 PYVLVHKGEDIGTVTTLDELAEAVEAVGRKG--LSIQRYKGLGEMNSDQLWDTTMCPDQR 777 Query: 585 RLVQLTID 592 L+Q+ ID Sbjct: 778 TLLQVRID 785 >UniRef50_Q04WF3 DNA gyrase subunit B n=20 Tax=Bacteria RepID=Q04WF3_LEPBJ Length = 641 Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust. Identities = 239/611 (39%), Positives = 355/611 (58%), Gaps = 32/611 (5%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYT---DTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 +Y+A I++L GLE VR+RPGMY D T + + EV+DNSVDEA+AGH + + + Sbjct: 7 SYSASQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIRISIL 66 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 + +EV D+GRG+PVDIHP++ + +E+++ LHAGGKF N Y+ SGGLHGVG+SVVN Sbjct: 67 PNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVVN 126 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS+ +EV V + G++Y +E G V +++ G +R GT V F PD T F + F Sbjct: 127 ALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSER--GTIVRFKPDATIFTTVDFQ 184 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTE------QRWCYQDGLNDYLAEAVNGLPTLP 234 L+ + A L G+ + +D E + + G+ ++ E +N Sbjct: 185 FDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNEFQFSGGIVSFV-EHINENKHPM 243 Query: 235 EKPFIGNFAGDTEAVDWALLWLPEGGELLTES---YVNLIPTMQGGTHVNGLRQGLLDAM 291 K D + ++ + E TE+ + N I GGTH+ G R L + Sbjct: 244 HKVIHFERNKDDVLAEISIQY----SETYTENIFCFTNNINNNLGGTHLEGFRAALTRTL 299 Query: 292 REFCEYRNIL----PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 +F + L P G LS ED+ + V+S+K+ PQF QTKE+L + + + Sbjct: 300 NDFLKKDTTLSKKHPTG--LSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQ 357 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADC 404 + + L+ +N + + E I SA+ R A K RK + G LPGKLADC Sbjct: 358 TLSSEGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADC 417 Query: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 + +D +EL+LVEGDSAGGSAKQ RDR QAI+PLKGKILN + D++L+S+E+ + Sbjct: 418 SEKDPAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRIL 477 Query: 465 SVAI--GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA 522 A+ GI D +++++RY KI I+ DAD DG HI TLL F ++ R +++ G++YVA Sbjct: 478 VSALGTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLYVA 537 Query: 523 LPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582 PPLY I GK YA +++EKE +L+ + + K +QR+KGLGEMNP QL ETT+DP+ Sbjct: 538 QPPLYLIKHGKNSTYAYSDKEKEELLKNVGTE--KVVIQRYKGLGEMNPEQLWETTMDPS 595 Query: 583 TRRLVQLTIDD 593 R ++++ +DD Sbjct: 596 NRVVLKVKLDD 606 >UniRef50_O67137 DNA gyrase subunit B n=13 Tax=cellular organisms RepID=GYRB_AQUAE Length = 792 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 254/639 (39%), Positives = 357/639 (55%), Gaps = 48/639 (7%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y A+AI+ ++GLE VR RP MY +HL E++DN+VDEA+AG+A+ + V + Sbjct: 10 QEYTAEAIKAVSGLEHVRLRPAMYIGDIGERGLHHLIWEILDNAVDEAVAGYARNISVTI 69 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S+ V DDGRG+PVDIHPE G PAVE++ L AGGKF K Y +SGGLHGVG SVV Sbjct: 70 HRDNSVTVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKFEKKVYTYSGGLHGVGASVV 129 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS+ + V V RDG++Y +AF+ GE V+ L VVG KR GT V F PD F++ Sbjct: 130 NALSEWLIVEVYRDGKIYRMAFKRGEVVEPLHVVGETKKR--GTKVSFKPDPEIFETTEI 187 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 + ++ A L P V+ DE + + G+ + + G L + I Sbjct: 188 KFDIVEKRVRELAYLNPEVKFELTDERLGKHLIYKFDRGIEELVKYLNEGKEPLFKD--I 245 Query: 240 GNFAGDTEA--VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 G+ E VD A ++ + E + ES+VN I T++GGTHV G R GL A+ + Sbjct: 246 IRIQGEKEGVIVDIAFQYVKDYKERI-ESFVNNIKTVEGGTHVTGFRSGLSKAVIRMAQG 304 Query: 298 RNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 + K + ED+ + V++ K+ +PQF GQTK +L ++ V + D Sbjct: 305 LKLAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNVKQIVESITYDFLTS 364 Query: 357 WLNQNVQAAELLAEMAISSAQRR--MRAAKKVVRKK--LTSGPALPGKLADCTAQDLNRT 412 + + + + E AI +A R + AK++VR+K L G LPGKLADC+ D ++ Sbjct: 365 YFEKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEG-VLPGKLADCSETDPSKC 423 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 E+FLVEGDSAGGSAKQARDR YQAI+PL+GKI+N + D+VL++ E+ I A+G Sbjct: 424 EIFLVEGDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALGCGI 483 Query: 473 DSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 D DL +LRY KI ++ DAD DG HI TLL F + LV+ G+VY+A PPLYR+ Sbjct: 484 GEDLDLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLYRVKK 543 Query: 532 GKEVYYALTEEEKEGVLEQLKRKKGK---PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 GK+ Y ++E E L R+KG+ + FKG LV+ Sbjct: 544 GKKEIYIKDDKEFEHFLLNEIREKGRLVDAREKEFKG------------------EELVR 585 Query: 589 LTIDDED---------DQRTDAMMDMLLAKK-RSEDRRN 617 L ID +D + + +++ LL + R ED RN Sbjct: 586 LLIDLKDYEDAYRALVKSKGENLVNFLLTHRVREEDLRN 624 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 3/61 (4%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 VQR+KGLGEMNP QL ETT++P TRRL ++ I ED D + +L+ ++ E RR ++ Sbjct: 724 VQRYKGLGEMNPEQLWETTMNPKTRRLKKVKI--EDAAEADRIFTILMGEQ-VEPRREFI 780 Query: 620 Q 620 + Sbjct: 781 E 781 >UniRef50_P34031 DNA gyrase subunit B n=54 Tax=Bacteria RepID=GYRB_SPICI Length = 640 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 223/610 (36%), Positives = 367/610 (60%), Gaps = 22/610 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDV 57 M YN+++I++L GLE +R+RPGMY T +HL E++DNS+DE LA A ++ + Sbjct: 1 MGDNYNSESIQILEGLEAIRKRPGMYIGATNARGLHHLVWEIVDNSIDEVLANFANKIKI 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 IL+ D+S+ VID+GRG+P++IHP+ V +E + LHAGGKF + Y+ SGGLHGVG S Sbjct: 61 ILNKDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGAS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKV-QDLQVVGTCGKRNTGTSVHFWPDETFF-D 175 VVNALSK ++V VR++ + Y + F NG ++ ++ VG+ + TGT+V F PDE F + Sbjct: 121 VVNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTSE--TGTTVTFLPDEKIFKE 178 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR---WCYQDGLNDYLAEAVNGLPT 232 + FS S + + +K L G+EI+ D E++ + + +G+ DY+ E + T Sbjct: 179 TTIFSFSTIQNRIKQLVFLNKGLEISLVDLREEDEEKTVLYQFNNGIKDYVLELNKTIGT 238 Query: 233 LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 F D V++ L + E + S+ N I T +GGTH G R ++ + Sbjct: 239 PLNDVFYVEGIEDNIVVEFGLQYNDNYSENIF-SFCNNINTHEGGTHEEGARLAIVREIN 297 Query: 293 EFCEYRNILPRGV-----KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 + ++N + + K + +DI + ++S++ +PQ+ GQT ++L + + VS Sbjct: 298 NY--FKNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKIVS 355 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA--AKKVVRKKLTSGP-ALPGKLADC 404 +V +L +N + A+ + E S + + A AK++ R+K+ +LPGKL+DC Sbjct: 356 NIVGKGLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLSDC 415 Query: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 +D EL++VEGDSAGGSAK R+R++QAI+PL+GKILN + ++ + E++ I Sbjct: 416 ETKDAKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSI 475 Query: 465 SVAIGID-PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 A+G D+ + +LRY K+ I+ DAD DG HI LL F ++ + L+++G++Y+A Sbjct: 476 ITALGAGIKDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQ 535 Query: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583 PPLY+++ ++ Y ++ E E E+L ++ +QR+KGLGEMNP QL ETT+DP Sbjct: 536 PPLYKVENSNQIRYVYSDNELELYKEELLKQNKNYTIQRYKGLGEMNPEQLWETTMDPER 595 Query: 584 RRLVQLTIDD 593 R L+++++++ Sbjct: 596 RLLLKVSVNN 605 >UniRef50_A8LVU4 DNA gyrase subunit B domain protein n=37 Tax=Actinomycetales RepID=A8LVU4_SALAI Length = 730 Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust. Identities = 251/682 (36%), Positives = 368/682 (53%), Gaps = 66/682 (9%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y AD + L GL+ VR+RPGMY TD+ HL E++DNS DE +AGHA ++V LHA Sbjct: 54 YEADDLTHLEGLDAVRKRPGMYIGSTDSRGVGHLVNEILDNSTDEGVAGHATSIEVTLHA 113 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S++V DDGRG+P D+H + G+ VEL+L RLHAGGKF Y+ SGGLHGVG S VNA Sbjct: 114 DGSVQVDDDGRGIPTDVHAKSGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVNA 173 Query: 122 LSKRVEVNVRRDGQVYNIAFENG--------------EKVQDLQVVGTCGKRN-TGTSVH 166 LS+R +V VRR G+++ ++F +G LQV+G +R TGTS+ Sbjct: 174 LSRRFDVTVRRGGKIHTMSFRHGVPGTFDGDGPEAPFRAGPGLQVIGAVKRRQRTGTSIR 233 Query: 167 FWPDETFFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLN--- 220 +W D +F+ + L+ A L PGV +D E+R+ Y +GL Sbjct: 234 YWYDPRYFEVGATLDAEAVRMKLRNTAFLVPGVSYLLRDHTGAEPVEERFHYPNGLTDMV 293 Query: 221 DYLAEA----VNGLPTLPEKPFIGNFAGDTEA-----------VDWALLWLPEGGELLTE 265 D+LA A V+G+ + + A D V+ A W G E E Sbjct: 294 DFLAPAGDRPVSGILVVSGEGTYRENAADANGVMQANVPRRAEVELAFRW-GTGYERTVE 352 Query: 266 SYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAE------DIWDRCAYV 319 + N I GGTH G + L + + RN RG+ + E DI + V Sbjct: 353 CFTNTIRNAHGGTHRKGFERALTRTLADAV--RNA--RGLLKAKEDPPTLDDILEGMTAV 408 Query: 320 LSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRR 379 + V++ +PQF QTK+ LS+ + +V+ +WL + AE + + R Sbjct: 409 VHVRIPEPQFTSQTKDELSTAGITKVLQRLVEQHLKVWLEERRTKAEARTVLQKIADAAR 468 Query: 380 MRAAKK-----VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREY 434 +R +K RK G ++P KL DC + + R+E+F+VEGDSA G+A+ AR EY Sbjct: 469 VRLTQKQQKDAARRKTALEGASMPAKLVDCRSTGVARSEMFIVEGDSALGTARLARSSEY 528 Query: 435 QAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD-DLSQLRYGKICILADADS 493 QA++P++GKILN + + +VL + E I +G DLS +RYG++ I+ADAD Sbjct: 529 QALLPIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLSAVRYGRVLIMADADV 588 Query: 494 DGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL---GKEVYYALTEEEKEGVLEQ 550 DG HI TLL LF ++ R L++ G +Y A+PPL++I + Y T+EE E + + Sbjct: 589 DGAHIRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTVYTYTQEEMEATVRR 648 Query: 551 LKRKKGK---PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLL 607 L+ K GK + RFKGLGEMN +L ETT++P R + ++T+ ED + + ++++L+ Sbjct: 649 LE-KAGKQIVTPIPRFKGLGEMNADELWETTMNPAGRAVRRITL--EDAEAAEQVLELLM 705 Query: 608 AKKRSEDRRNWLQEKGDMAEIE 629 +K E RRNWL D + E Sbjct: 706 GEK-VEPRRNWLIASADRVDRE 726 >UniRef50_C4G1I8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1I8_ABIDE Length = 677 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 243/686 (35%), Positives = 366/686 (53%), Gaps = 65/686 (9%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDV 57 M++ Y+ I +L GLE VR+RPGMY T T +HL E++DN +DE LAG ++D+ Sbjct: 1 MSENYDGSQIVILEGLEAVRKRPGMYIGSTGTRGLHHLIWEILDNGIDEHLAGFCSQIDL 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 IL D + + D GRG+PVDIHP + +P ++ LHAGGKFS Y+ SGGLHGVG S Sbjct: 61 ILRNDGGITIRDYGRGVPVDIHPTKKIPTERVVYTVLHAGGKFSGGAYKVSGGLHGVGAS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEK------VQDLQVVGTCGKRNTGTSVHFWPDE 171 VVNALS ++ V +RRDG VY +ENG +L V TC K + GTSV F+PD+ Sbjct: 121 VVNALSTKMIVEIRRDGNVYVDEYENGGHPVTALVKGELPAVKTCKKSDKGTSVTFYPDD 180 Query: 172 TFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLP 231 T F++ F + LK A L G+++ FKDEI E+ + +DG+ Y+ Sbjct: 181 TIFETIEFKADIIKKKLKETAFLNKGLKLNFKDEITGEEKTYEEKDGIKSYVKYINRETE 240 Query: 232 TL-PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 + E ++ +GD E V+ A + E + +Y N I + GGT V G + L Sbjct: 241 VIHDEVVYVEGESGDIE-VEVAFQYTNGFSEQIN-AYCNRINVVDGGTLVTGFKTALTRV 298 Query: 291 MREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 M ++ L + +DI + ++S+K DPQF GQTK +L + V V Sbjct: 299 MNQYARELGYLKGKDDNFDGKDIRNGIVAIISIKHPDPQFEGQTKTKLGNTDAKTAVEEV 358 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRA--AKKVVRKKLTSGPALPGKLADCTAQ 407 V + + ++N++ + + ++A S R + A+ V K L + KLA C+++ Sbjct: 359 VSKEIVRYFDKNIEVLKSILDLAQKSYSARTASDKARNAVLKSLNDFD-VKSKLASCSSK 417 Query: 408 DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVA 467 + E++LVEGDSAGG+ K AR+R+ QA++PL+GKILN + + +++L + E+ + Sbjct: 418 NAEECEIYLVEGDSAGGTVKTARNRKTQAVLPLRGKILNVEKAALEKILVNNEIKSMIAT 477 Query: 468 IGID-PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 G D D+++LRY KI IL DAD DG HI+TLL F + L+K G +Y LPPL Sbjct: 478 FGCGIGDEFDITKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPDLIKEGKIYRGLPPL 537 Query: 527 YRIDLGKEVYYALTEEEKEG--------------------------------------VL 548 Y++D +E + EE+K G L Sbjct: 538 YKVDY-EESGAKVLEEKKLGEGQLDIFQLGVEDKPSEKQLKAKSGKKKKKSEYIFNDYEL 596 Query: 549 EQLKRKKGKP--NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD--EDDQRTDAMMD 604 E+ K+ K + +QR+KGLGEM+ QL ETTLDP TR L ++ I D E D+ T +M Sbjct: 597 EKFKKNKNRKILEIQRYKGLGEMDASQLWETTLDPKTRSLARIDISDTVEADEVTSLLMS 656 Query: 605 MLLAKKRSEDRRNWLQEKGDMAEIEV 630 ++ RR ++ + A++++ Sbjct: 657 SVVPP-----RREFIMNEAKYAKVDI 677 >UniRef50_D1BTM8 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Actinobacteria (class) RepID=D1BTM8_XYLCX Length = 715 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 257/667 (38%), Positives = 366/667 (54%), Gaps = 84/667 (12%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y A + VL GLE VR+RPGMY TD+ H E+IDNSVDEAL G A ++ V+L Sbjct: 14 KNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGFATKIAVVL 73 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 HAD S+ V DDGRG+PVD+ P+ G+ VE++ +LHAGGKF +Y SGGLHGVG SVV Sbjct: 74 HADSSVTVTDDGRGIPVDVEPKTGLSGVEVVFTKLHAGGKFGGGSYTASGGLHGVGASVV 133 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGE---------------------KVQDLQVVGTCGK 158 NALS R++V V R G+ Y + F GE + +L VVG + Sbjct: 134 NALSARLDVEVDRGGKTYRMTFHRGEPGTFADGPAGASPESAFSPFIERSELAVVGRAKR 193 Query: 159 RNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDE--INNT------ 209 TGT V +W D F S FS L ++ L PG+EIT +DE + T Sbjct: 194 GVTGTRVRYWADRQIFPKSAVFSYDELVTRVRQTTFLVPGLEITVRDERGLPGTPGADGP 253 Query: 210 -EQRWCYQDG---LNDYLA---------------EAVNGLPTLPEKPFIG--NFAGDTEA 248 E+ + + G D+LA +P L E+ + D E Sbjct: 254 HEEMFVHHGGAVDFVDFLAPDAPVTATWTLRGSETFTETVPVLDERGHMSPREVQRDCE- 312 Query: 249 VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLS 308 VD AL W G + ++VN+I T +GG+H+ G QGL+ +R+ E R +K+S Sbjct: 313 VDIALRW-GTGYDTELRTFVNIIATPKGGSHLTGFEQGLVKVVRKQVEAN---ARRLKIS 368 Query: 309 AEDIWDRC---------AYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD---AFIL 356 A+D +R V++V++ +PQF GQTKE L + A V+ V+ A + Sbjct: 369 AKDGGERLEKDDITAGLTAVVTVRLAEPQFEGQTKEVLGTAPVRAIVARTVEKQLGAILT 428 Query: 357 WLNQNVQA-AELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRT 412 ++ +A A LL + ++ + R+ A K+ RK +LP KLADC + D+ R+ Sbjct: 429 STKRDDKAQASLLLDKVVAEMRARVSARKQKEISRRKNALETSSLPAKLADCRSDDVERS 488 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 ELF+VEGDSA G+AK AR ++QA++P++GKILN + S ++L + E I +G Sbjct: 489 ELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASISDMLRNAECAAIIQVLGAGS 548 Query: 473 D-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 S DL RYGK+ ++ DAD DG HI TLL LF ++ R LV+ G V+ A+PPL+RI++ Sbjct: 549 GRSFDLDAARYGKVVLMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVFAAVPPLHRIEV 608 Query: 532 ------GKEVYYALTEEEKEGVLEQLKR--KKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583 G E Y +E E + L++L R K+ K ++QR+KGLGEM+ QL ETT+DP Sbjct: 609 YGARGKGNEYIYTYSEAELQATLKRLDRAGKRYKDDIQRYKGLGEMDADQLAETTMDPRH 668 Query: 584 RRLVQLT 590 R L ++T Sbjct: 669 RTLRRVT 675 >UniRef50_P50074 DNA gyrase subunit B, novobiocin-resistant n=117 Tax=cellular organisms RepID=GYRBR_STRSH Length = 677 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 256/653 (39%), Positives = 369/653 (56%), Gaps = 43/653 (6%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVI 58 T +Y+A+AI VL GL+ VR+RPGMY +T +HL QE++DNSVDEALAG A R+DV Sbjct: 23 TASYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELVDNSVDEALAGVADRIDVT 82 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 + AD + V+D+GRG+PV +HP E PAVE++L LHAGGKF Y SGGLHGVG+SV Sbjct: 83 VLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYGVSGGLHGVGLSV 142 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS R+ + DG + + +G L + TGTS+ FW D F++ Sbjct: 143 VNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLARHEATSR--TGTSLTFWADGDIFETTE 200 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ----------------RWCYQDGLNDY 222 +S L + A L G+ +T DE ++ + Y G+ D+ Sbjct: 201 YSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEADSDPTAKTVSYRYDGGITDF 260 Query: 223 LAEAVNGLPTLPEKPFIGNFAG-DTEAVDWALLWLPEGGELLTE--SYVNLIPTMQGGTH 279 + +N P P + A DTE + A + L G+ SY N I T +GGTH Sbjct: 261 VVH-LNARKGEPAHPSVITIAAEDTERLLSAEIALQWNGQYTDSVYSYANAIHTHEGGTH 319 Query: 280 VNGLRQGLLDAMREFCEYRNIL-PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLS 338 G R L + + + +L + LS EDI + ++SV + +PQF GQTK +L Sbjct: 320 EEGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQTKTKLG 379 Query: 339 SRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM--RAAKKVVRKK-LTSGP 395 + + + +V + W ++N A + A+ +A R+ R A+ + R+K L Sbjct: 380 NTEVRTLLQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETA 439 Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEV 455 ALPGKL+DC + D +E+F+VEGDSAGGSAK R+ +YQAI+P++GKILN + D+V Sbjct: 440 ALPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKV 499 Query: 456 LASQEVHDISVAIGIDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV 514 L +QE + A G D D+++LRY KI ++ADAD DG HI+TLL + R LV Sbjct: 500 LQNQENQALISAFGTGVHEDFDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLV 559 Query: 515 KHGHVYVALPPLYRIDLGKE-VYYALTEEEKEGVLE---QLKRKKGKPNVQRFKGLGEMN 570 + GHV+++ PPLY+I +E V YA ++ E+ +LE + R+ ++QRFKGLGEMN Sbjct: 560 EEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDGRRIRDDSIQRFKGLGEMN 619 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSED---RRNWLQ 620 +LR TT+DP+ R L Q+T+DD A D L + ED RR+++Q Sbjct: 620 AEELRVTTMDPDHRVLGQVTLDDA------AFADDLFSVLMGEDVEARRHFIQ 666 >UniRef50_Q94BZ7 DNA gyrase subunit B, mitochondrial n=83 Tax=cellular organisms RepID=GYRBM_ARATH Length = 732 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/611 (38%), Positives = 354/611 (57%), Gaps = 22/611 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVI 58 ++ Y+++ I+VL GL+PVR+RPGMY +T +HL E++DN++DEA AG+A +VDV+ Sbjct: 88 SKGYSSEQIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVV 147 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF--SNKNYQFSGGLHGVGI 116 LHAD S+ V+D+GRG+P D+HP ++E +L LHAGGKF ++ Y SGGLHGVG+ Sbjct: 148 LHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGL 207 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDL--QVVGTCGKRNTGTSVHFWPD-ETF 173 SVVNALS+ +EV+V RDG + + G+ + L +V+ K GTS+ FWPD E F Sbjct: 208 SVVNALSEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVF 267 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 + F + + ++ A L P V I+ K E ++ E+ + L E V+ L T Sbjct: 268 TTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNT- 326 Query: 234 PEKPFIGNFAG-----DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288 +K I + G + VD AL W + Y N I T+ GGTH+ G++ L Sbjct: 327 -DKNPIHDVLGFRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLT 385 Query: 289 DAMREFCE-YRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 + + + + + + LS E + + ++SVK+ +P+F GQTK RL + + V Sbjct: 386 RTLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVD 445 Query: 348 GVVKDAF--ILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL-PGKLADC 404 V++ L L+ ++ + + + A + A+++VR K + PGKLADC Sbjct: 446 QSVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADC 505 Query: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 ++ D +E+F+VEGDSAGGSAKQ RDR +QAI+PL+GKILN + ++E+ ++ Sbjct: 506 SSTDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNL 565 Query: 465 SVAIGIDPDSDDLSQ--LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA 522 + +G+ +D + LRY KI IL DAD DG HI TLL F ++ RAL G +YV Sbjct: 566 ILGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVG 625 Query: 523 LPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582 +PPL++++ GK Y + + + + N+QRFKGLGEM P QL ETT++P Sbjct: 626 VPPLFKVERGKNAQYCYDDADLKKITSNFP-ANASYNIQRFKGLGEMMPEQLWETTMNPE 684 Query: 583 TRRLVQLTIDD 593 TR L QL +DD Sbjct: 685 TRILKQLVVDD 695 >UniRef50_C1DUC4 DNA gyrase subunit B n=5 Tax=Bacteria RepID=C1DUC4_SULAA Length = 809 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 228/561 (40%), Positives = 334/561 (59%), Gaps = 26/561 (4%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y+A+AI+ +TGL+ VR RP MY +HL E++DN+VDEA+AG+AK + VI+H Sbjct: 11 YSAEAIQAVTGLDHVRARPAMYIGDIGERGLHHLVWEILDNAVDEAMAGYAKNITVIIHQ 70 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S+ V DDGRG+PVDIHPE +PAVE++ L AGGKFS K YQ+SGGLHGVG SVVNA Sbjct: 71 DGSVTVEDDGRGIPVDIHPEFKIPAVEMVFTILGAGGKFSKKAYQYSGGLHGVGASVVNA 130 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS + V V R+G++Y + G+ V L+VVG KR GT V F PD++ F++ Sbjct: 131 LSSWLVVEVYRNGKIYRQEYSYGKPVYPLKVVGDTTKR--GTKVTFKPDDSIFETTTIKF 188 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGN 241 + ++ A L PGV DE + ++ + +++G+ D++ L ++ Sbjct: 189 DIIQKRVRELAFLNPGVRFVVIDERKDIKEEFYFENGIVDFVRVLNQAKEPLFDEVIYVK 248 Query: 242 FAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNIL 301 D V+ A + E++ ES+VN I T++GGTHV+G R L +M + L Sbjct: 249 GEKDGVLVEVAFQYTKSYNEVI-ESFVNNIKTVEGGTHVSGFRAALTRSMNKTLSGMK-L 306 Query: 302 PRGVK--LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWL- 358 P+ +K +S +D+ + V+SVK+ +PQF GQTK +L ++ V VV D + + Sbjct: 307 PKELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESVVGDYLLEYFE 366 Query: 359 -NQNVQAAELLAEMAISSAQRRMRAAKKVVRKK-LTSGPALPGKLADCTAQDLNRTELFL 416 N+++ + + A+ R AK++ R+K +LPGKLADC+ D ELF+ Sbjct: 367 KNKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSESDPQLCELFI 426 Query: 417 VEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI------ 470 VEG+SAGGSAKQ RDR QAI+PLKGKILN + D++L+++E+ I AIG Sbjct: 427 VEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVNAIGTGIGLPI 486 Query: 471 --------DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA 522 + + DLS+LRY KI ++ADAD DG HI TLL LF + F ++++GH+Y+A Sbjct: 487 KSEDEEKKEDEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRFFPQIIENGHLYIA 546 Query: 523 LPPLYRIDLGKEVYYALTEEE 543 PPLY++ G+ Y +EE Sbjct: 547 QPPLYKLKKGRSEIYVKDDEE 567 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/60 (53%), Positives = 43/60 (71%), Gaps = 3/60 (5%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 VQR+KGLGEMNP QL ETT++P TRRL+Q+TI ED D + +L+ +K E RR ++ Sbjct: 741 VQRYKGLGEMNPEQLWETTMNPKTRRLLQVTI--EDAALADEVFSILMGEK-VEPRREFI 797 >UniRef50_B7G298 Predicted protein n=3 Tax=cellular organisms RepID=B7G298_PHATR Length = 727 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 256/648 (39%), Positives = 353/648 (54%), Gaps = 40/648 (6%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRVDVIL 59 Q+Y A I VL GL+PVR+RPGMY +T P+ HL EV+DN VDEALAGHA V + Sbjct: 64 QSYGAGQITVLKGLDPVRKRPGMYIGSTGPDGLHHLVWEVVDNCVDEALAGHATFVTTTI 123 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF----SNKNYQFSGGLHGVG 115 HAD SL V DDGRG+P D+H E G A+E +L LHAGGKF SN Y+ SGGLHGVG Sbjct: 124 HADGSLTVTDDGRGIPTDLHSETGKSALETVLTELHAGGKFDNQGSNSGYKVSGGLHGVG 183 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENG---EKVQDLQVVGT-CGKRNTGTSVHFWPDE 171 ISVVNALS+ V V V R ++Y + FE G +Q+L + T KR +GTSV F PD Sbjct: 184 ISVVNALSEFVHVKVDRTPELYQMRFERGVPTGPLQNLDKLKTLLSKRKSGTSVTFLPDL 243 Query: 172 TFFDSPR------FSVSRLTHVLKAKAVLCPGVEITFKDEINNTE----QRWCYQDGLND 221 F F SRL + A L G+ +T KDE + Q + + GL + Sbjct: 244 KVFKGDNGKPDITFDSSRLKGRMDEIAYLNAGLVLTLKDERKSPGRGRLQVFYHAGGLAE 303 Query: 222 Y---LAEAVNGL---PTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQ 275 Y L L T K D+ + D AL W + S+ N I T Sbjct: 304 YAELLCRTKTPLFQGTTSSRKKKPARKQKDSASDDDALRWSSDMYAESILSFCNNIRTRD 363 Query: 276 GGTHVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTK 334 GG+HV GL+ L + + + N G L E I + ++SV + +P+F GQTK Sbjct: 364 GGSHVEGLKACLTRTVNQAAKRSNKAKEGAANLPGEFIREGLTAIVSVSVSEPEFEGQTK 423 Query: 335 ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKL 391 RL + + V ++ + + + + A S+ A V RK L Sbjct: 424 GRLGNPEVRPAVDSLLSAELTKLFDFRPEILDAIYNKASSAQAAAAAAKAARDMVRRKTL 483 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVS 451 + LPGKLADC ++D +E+F+VEGDSA GSAKQ RDR QAI+PL+GKILN + Sbjct: 484 LTSTILPGKLADCASRDPEESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIERAA 543 Query: 452 SDEVLASQEVHDI--SVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKH 509 ++ + + E+ + ++ +G+ D LRYG+I I+ DAD DG HI LL F ++ Sbjct: 544 TERIYQNTELQGLISALGLGVKGSEFDPKSLRYGRIVIMTDADVDGAHIRVLLLTFFYRY 603 Query: 510 FRALVKHGHVYVALPPLYRIDLG----KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKG 565 R LV++GHVY+A PPLY++ +G ++ YA + E+ V+ Q GK ++QRFKG Sbjct: 604 QRELVENGHVYIAQPPLYKVSVGSGRSRKEGYAFNDTERNTVMMQ-ALAAGKVSLQRFKG 662 Query: 566 LGEMNPMQLRETTLDPNTRRLVQLTIDDED--DQRTDAMMDMLLAKKR 611 LGEM P QL TT+DP R ++Q+T++D DQ +M +A ++ Sbjct: 663 LGEMMPEQLWSTTMDPERRTMLQVTVNDASMADQTLSILMGDTVAPRK 710 >UniRef50_A9KS52 DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Bacteria RepID=A9KS52_CLOPH Length = 642 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 235/653 (35%), Positives = 363/653 (55%), Gaps = 37/653 (5%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + YN I VL GLE VR+RPGMY T T +HL E++DN +DE LAG ++++ L Sbjct: 2 EQYNGSQIVVLEGLEAVRKRPGMYIGSTGTRGLHHLIWEILDNGIDEHLAGFCNQLEITL 61 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D + + D GRG+PVDIHP + +P ++ LHAGGKF Y+ SGGLHGVG SVV Sbjct: 62 LKDGGISIADHGRGVPVDIHPTKKIPTARVVYTILHAGGKFGGSVYKVSGGLHGVGASVV 121 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGE----KVQD--LQVVGTCGKRNTGTSVHFWPDETF 173 NALS R+ V +RRDG++Y +E+G ++++ L VVG C K +TGT V F+PD T Sbjct: 122 NALSTRMIVEIRRDGKIYRDEYEHGGHPCVELENGMLPVVGKCNKSDTGTKVTFYPDPTI 181 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 F++ F +T LK A L + I F D+ ++ +C + G+ +++ + Sbjct: 182 FETVEFKAETITKKLKEVAFLNKNLSIVFYDQNTGFKKTYCEEFGIKSFVSYINREASVI 241 Query: 234 PEKP-FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 E+P +I +GD E V+ AL + E + +Y N I + GGT V G + L M Sbjct: 242 HEEPIYIEGKSGDIE-VEVALQYTNSFSEQIN-AYCNRINVVDGGTLVTGFKTALTRVMN 299 Query: 293 EFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 351 ++ +L + +DI + ++S+K DPQF GQTK +L + + V V Sbjct: 300 QYARELGVLKEKDENFDGKDIRNGLVTIISIKHPDPQFEGQTKTKLGNTDAKSAVEDVFS 359 Query: 352 DAFILWLNQNVQAAELLAEMAISS--AQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 409 + ++NV+ + + E ++ S A++ A+ V K+L KLA C+++ Sbjct: 360 GEVTRFFDKNVEILKAILENSMRSYTARKASDKARSAVLKQLNDIDT-KSKLASCSSKKP 418 Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 E+++VEGDSAGG+ K AR+R QA++PL+GKI+N + + +++L + E+ + + G Sbjct: 419 EECEVYIVEGDSAGGTVKTARNRRTQAVLPLRGKIINVEKATLEKILVNNEIKSMIASFG 478 Query: 470 IDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR 528 D D+S+LRY KI IL DAD DG HI+TLL F + L+ G +Y LPPLYR Sbjct: 479 CGIGEDFDISKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPELIMEGKIYRGLPPLYR 538 Query: 529 IDLGKEVYYALTEEEKEGVLEQLK--------RKKGKP---NVQRFKGLGEMNPMQLRET 577 ++ Y +E +K+ E + RK K ++QR+KGLGEM+ QL ET Sbjct: 539 VE------YETSEGKKKKKFEYIYNDFELDKFRKNTKHKIIHIQRYKGLGEMDAEQLWET 592 Query: 578 TLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 TL+P TR L Q++I D D D +L++ RR ++ ++ A++++ Sbjct: 593 TLNPETRVLAQVSITDTVD--ADETTTLLMS-NNVPPRRAFIMDEAKYAKLDI 642 >UniRef50_Q9Z8R3 DNA gyrase subunit B n=80 Tax=cellular organisms RepID=GYRB_CHLPN Length = 805 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 223/571 (39%), Positives = 332/571 (58%), Gaps = 26/571 (4%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y+A AI VL GL+ VR RPGMY T T +HL EV+DNS+DEA+AG+ R+DV + Sbjct: 6 KNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSRIDVRI 65 Query: 60 HADQSLEVIDDGRGMPVDIHPEEG------VPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 D + ++D+GRG+P+++H E V A+E++L LHAGGKF +Y+ SGGLHG Sbjct: 66 LEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVSGGLHG 125 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF 173 VG+S VNALS+++ V +D + Y + F G V LQ V ++ GT + F+PD Sbjct: 126 VGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLQYVSVSDRQ--GTEIVFYPDPKI 183 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE--INNTEQRWCYQDGLNDYLAEAVNGLP 231 F + F S L L+ A L G+ I F+D+ ++ + + Y+ G+ +++ Sbjct: 184 FSTCTFDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVTFFYEGGIQSFVSYLNQNKE 243 Query: 232 TLPEKPFI--GNFAGDTEAVDW--ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 +L +P G GD +++ AL W G L SY N IPT QGGTH+ G L Sbjct: 244 SLFSEPIYICGTRVGDDGEIEFEAALQW-NSGYSELVYSYANNIPTRQGGTHLTGFSTAL 302 Query: 288 LDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 + + + N+ + L+ EDI + V+SVK+ +PQF GQTK++L + ++ Sbjct: 303 TRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNSDVSSVA 362 Query: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK----VVRKKLTSGPALPGKLA 402 VV +A ++ +N Q A ++ + +AQ R AAKK +RK LPGKL Sbjct: 363 QQVVGEALTIFFEENPQIARMIVDKVFVAAQAR-EAAKKARELTLRKSALDSARLPGKLI 421 Query: 403 DCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVH 462 DC +D + E+++VEGDSAGGSAKQ RDR +QAI+P++GKILN + ++ +QE+ Sbjct: 422 DCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQEIG 481 Query: 463 DISVAI--GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 I A+ GI D+ +LS+LRY +I I+ DAD DG HI TLL F +H AL+++ VY Sbjct: 482 TIIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENECVY 541 Query: 521 VALPPLYRIDLGKEVYYALTEEEKEGVLEQL 551 +A PPLY++ K+ Y L+E+E + L L Sbjct: 542 IAQPPLYKVSKKKDFRYILSEKEMDSYLLML 572 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Query: 536 YYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDED 595 Y T EE L+ L RK +QR+KGLGEMN QL +TT++P R L+ +++ D Sbjct: 713 YSCYTLEEVINYLKNLGRKG--IEIQRYKGLGEMNADQLWDTTMNPEQRTLIHVSLKDAV 770 Query: 596 DQRTDAMMDMLLAKKRSEDRRNWLQ 620 + D + ML+ ++ RR +++ Sbjct: 771 E--ADHIFTMLMGEE-VPPRREFIE 792 >UniRef50_B8GXQ0 DNA gyrase subunit B n=17 Tax=cellular organisms RepID=GYRB_CAUCN Length = 805 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 227/565 (40%), Positives = 325/565 (57%), Gaps = 22/565 (3%) Query: 5 YNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y AD+I+VL GL+ VR+RPGMY D + +H+ EV+DN++DEALAGHA +V VIL+ Sbjct: 10 YGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATKVQVILN 69 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 AD S+ V DDGRG+PVD+H EGV A E+I+ +LHAGGKF +Y+ SGGLHGVG+SVVN Sbjct: 70 ADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVN 129 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG---------TCGKRNTGTSVHFWPDE 171 ALS +E+ + R+G+V+ + FE G+ V L+V G G+ TGT V F+P + Sbjct: 130 ALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTGTEVTFFPSK 189 Query: 172 TFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD--EINNTEQRWCYQDGLNDYLAEAVNG 229 F F L H L+ A L GV I FKD ++ E++ Y+ G+ ++ Sbjct: 190 DTFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKLFYEGGIEAFVRHLDKA 249 Query: 230 LPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 L + P D +D AL W E + + N IP GGTH++ R L Sbjct: 250 KTPLLKAPIAVKGVKDKVEIDLALWWNDSYHEQML-CFTNNIPQRDGGTHLSAFRAALTR 308 Query: 290 AMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + + E IL + V L ED + VLSVK+ DP+F+ QTK++L S + V G Sbjct: 309 IITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEG 368 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV---RKKLTSGPALPGKLADCT 405 +V + W ++ A+ + +A R A K RK +LPGKLADC+ Sbjct: 369 LVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTRRKSALDITSLPGKLADCS 428 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 +D ++E+F+VEGDSAGGSAKQAR+R+ QA++PL+GKILN D++L+S ++ + Sbjct: 429 ERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLSSDQIGTLI 488 Query: 466 VAIGIDPDSDDLS--QLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 A+G DD + ++RY KI ++ DAD DG HI TLL F + L++ G++Y+A Sbjct: 489 TALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIERGYIYIAQ 548 Query: 524 PPLYRIDLGKEVYYALTEEEKEGVL 548 PPLY+ GK Y + E + L Sbjct: 549 PPLYKASKGKSSRYLKDDAEMDAFL 573 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 9/75 (12%) Query: 559 NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI---DDEDDQRTDAMMDMLLAKKRSEDR 615 +QR+KGLGEMNP QL ETTLD R L+Q+ + DD DD + M D++ E R Sbjct: 737 TIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVNHADDADDMFSRLMGDLV------EPR 790 Query: 616 RNWLQEKGDMAEIEV 630 R ++QE AE++V Sbjct: 791 REFIQENALDAEVDV 805 >UniRef50_C6PY14 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY14_9CLOT Length = 653 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 244/637 (38%), Positives = 358/637 (56%), Gaps = 41/637 (6%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y+ A+ L LEPVR RPGMY +T +H E++DNS+DE G + VIL Sbjct: 9 QVYDVTALTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGFGDKAIVIL 68 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + D+S+ +ID+GRG+P IHP + VE++ LH GGKF+N Y+ SGGLHGVG +VV Sbjct: 69 NKDKSVTIIDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNDVYKTSGGLHGVGAAVV 128 Query: 120 NALSKRVEVNVRRDGQVYNIAFEN-----------GEKVQDLQVVGTCGKRNTGTSVHFW 168 NALSK V V ++++G +Y FE G V L++ G + TGT V F Sbjct: 129 NALSKWVVVEIKQNGHIYTQRFEYAYDKSLKRDMPGTPVTALKIAGNT--KETGTKVTFL 186 Query: 169 PDETFFDSPRFSVSRLTHVLKAKAVLCPGV--EITFKDEINNTEQRWCYQDGLNDYLAEA 226 PD+ F + F + L+ A G+ +I K E E+ + + GL D++ E Sbjct: 187 PDKDVFSNTEFKFDVIDERLQELAFQNKGITLKIIDKREDEVVEKEYHSERGLLDFI-EY 245 Query: 227 VNGLPTLPEKPFIGNFAGDTEAVDWAL-----LWLPEGGELLTESYVNLIPTMQGGTHVN 281 +N T P I F G+ E ++ + + SYVN IPT + GTH + Sbjct: 246 LNESKTALHTPPIL-FEGEREVNGISMYSEVCVQFTDSTTEYIASYVNNIPTTESGTHES 304 Query: 282 GLRQGLLDAMREFCEYRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR 340 G + G+ A +E+ + N+L K +D+ + ++ +K+ +P F GQTK +L + Sbjct: 305 GFKAGMTRAFKEWTKKLNLLKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTKTKLGNT 364 Query: 341 QCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAK--KVVRKKLTSGPA-L 397 + ++ + F W+ N A + AI +A RR + K + +KK+ G A L Sbjct: 365 EAYTMMNDLAYTKFSEWIEDNKDTASSIINNAIDAAARREKIKKINEAEKKKIGKGTAPL 424 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLA 457 GK+A CT +D + +E +VEGDSAGGSAKQARDR +Q IMP KGKI+NT + + VL Sbjct: 425 AGKIAVCTLKDPSFSEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVLG 484 Query: 458 SQEVHDISVAIGIDPDSDDLSQ-LRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516 S+E+ + AIG + Q L+Y KI I++DAD DG HI TL ++ R ++ + Sbjct: 485 SEELKIFNTAIGTGVLQNYKEQDLKYNKIIIMSDADVDGYHIRTLWMTYIYRYMRQIISN 544 Query: 517 GHVYVALPPLYRI---DLGKE-VYYALTEEEKEGVLEQLKRKKGKPN-VQRFKGLGEMNP 571 GH+Y+ALPPLY++ + KE V YA ++EE LE+ K++ GK +QR+KGLGEMNP Sbjct: 545 GHLYIALPPLYKVYKQNKNKEIVRYAYSDEE----LEKEKKQVGKGALIQRYKGLGEMNP 600 Query: 572 MQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA 608 QL ETTL+P TR L Q+TI ED + + M+ +L+ Sbjct: 601 DQLWETTLNPETRTLQQITI--EDAAKAEKMVSLLMG 635 >UniRef50_P66938 DNA topoisomerase 4 subunit B n=158 Tax=Bacteria RepID=PARE_STAAM Length = 663 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/642 (37%), Positives = 371/642 (57%), Gaps = 41/642 (6%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y+ D+I+VL GLE VR+RPGMY TD +HL E++DNSVDE L G+ +DV ++ Sbjct: 7 YSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTINK 66 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S+ + D+GRGMP IH + G P VE+I LHAGGKF Y+ SGGLHGVG SVVNA Sbjct: 67 DGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNA 125 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD-SPRFS 180 LS+ +EV + RDG +Y+ +F+NG +V + TGT V F PD+T F S F+ Sbjct: 126 LSEWLEVEIHRDGSIYHQSFKNGGSPSS-GLVKKGKTKKTGTKVTFKPDDTIFKASTSFN 184 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQR--WCYQDGLNDYLAEAVNGLPTLPEKPF 238 L+ L+ A L ++IT D + E++ + Y++G+ ++++ G L + Sbjct: 185 FDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHD--- 241 Query: 239 IGNFAGDTEA--VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 + F+G+ VD A + + E + S+VN + T GGTH G + + ++ Sbjct: 242 VATFSGEANGIEVDVAFQYNDQYSESIL-SFVNNVRTKDGGTHEVGFKTAMTRVFNDYAR 300 Query: 297 YRNILPRGVK-LSAEDIWDRCAYVLSVKMQDP--QFAGQTKERLSSRQCAAFVSGVVKDA 353 N L K L DI + V+SV++ + QF GQTK +L + + + V VV D Sbjct: 301 RINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVADK 360 Query: 354 FILWLNQNVQAAELLAEMAISSAQ-----RRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408 +L + Q ++ L + AI + Q R+ R + +K L GKL +++ Sbjct: 361 LPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSKN 420 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE----VHDI 464 + EL+LVEGDSAGGSAK RDR++QAI+PL+GK++NT + +++ ++E +H I Sbjct: 421 TEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTI 480 Query: 465 SVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALP 524 +G D +D + Y ++ I+ DAD+DG HI LL F K+ + LV+ G V++ALP Sbjct: 481 GAGVGTDFKIEDSN---YNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALP 537 Query: 525 PLYRIDLG----KEVYYALTEEEKEGVLEQLKRKKGKP-NVQRFKGLGEMNPMQLRETTL 579 PLY+++ G K V YA T+EE L +L+++ GK +QR+KGLGEMNP QL ETT+ Sbjct: 538 PLYKLEKGKGKTKRVEYAWTDEE----LNKLQKELGKGFTLQRYKGLGEMNPEQLWETTM 593 Query: 580 DPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 +P TR L+++ + ED+ R+ + L+ K + RR W+++ Sbjct: 594 NPETRTLIRVQV--EDEVRSSKRVTTLMGDK-VQPRREWIEK 632 >UniRef50_B2URM5 DNA gyrase subunit B n=25 Tax=Bacteria RepID=B2URM5_AKKM8 Length = 852 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 226/552 (40%), Positives = 319/552 (57%), Gaps = 28/552 (5%) Query: 5 YNADAIEVLTGLEPVRRRPGMYT---DTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y A I+ L GLE VR+RPGMY D +H EV+DNS+DE LAG+ ++D+++H Sbjct: 21 YGAAQIDKLEGLEAVRKRPGMYIGDPDERGLHHCVFEVLDNSIDEHLAGYCSKIDIVIHV 80 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S+ ++D+GRG+PVDIHP+ G+PAVEL+L LHAGGKF Y++SGGLHGVG VNA Sbjct: 81 DGSISIVDNGRGIPVDIHPKFGIPAVELVLTNLHAGGKFGQGAYKYSGGLHGVGAKCVNA 140 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPRFS 180 LS + VRRDG+ Y I FE G+ V+ L+ VG+C TGT++ F+PD T F D+ F Sbjct: 141 LSDWFKAEVRRDGKRYQIKFERGKTVEPLRTVGSCACEVTGTTITFFPDATIFTDTTEFK 200 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQR--WCYQDGLNDYLAEAVNGLPTLPEKP- 237 RLT L+ A L PG+ I DE +R + Y+DG+ +++ + + E P Sbjct: 201 FDRLTTRLRELAFLNPGLVIELIDEREAPARRETFFYKDGIVEFVRQLGTNKEVINEDPI 260 Query: 238 -----------FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 + G D VD + E + N I GGTH++G R Sbjct: 261 SISGVRKVEVEYDGKKMEDDVLVDVVFQY-NNTYETNILCFANSIYNGDGGTHLSGFRGA 319 Query: 287 LLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 345 L + + + +L + LS ED+ + V+SVKM +P+F+ QTK++L + + Sbjct: 320 LTRVINGYAKANGLLKEKDPSLSGEDVREGLVAVISVKMPNPRFSSQTKDKLVNTEIEGV 379 Query: 346 VSGVVKDAFILWLNQNVQAAELLAEMAIS--SAQRRMRAAKKVVRKKLTSGPALPGKLAD 403 V VV + + +N A+ + E +I+ A+ R A++ VRK S LPGKLAD Sbjct: 380 VGNVVYEEIKTYFEENPAMAKKIIEKSITAARAREAARKARETVRKSALSIGGLPGKLAD 439 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C+ +D + ELF+VEGDSAGGSAK RDR QAI+PL+GK+LN + D+ L S+E+ + Sbjct: 440 CSDRDPAKCELFIVEGDSAGGSAKMGRDRRTQAILPLRGKVLNVEKARLDKALGSKEIQN 499 Query: 464 ISVAIGI------DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 + AIG D S L ++RY KI I+ DAD DG HI TLL F +H LV+ G Sbjct: 500 MITAIGAGIGEGDDEASFKLDRVRYHKIIIMTDADVDGAHIRTLLLTFFCRHMPQLVRAG 559 Query: 518 HVYVALPPLYRI 529 ++Y+A PLYRI Sbjct: 560 YLYIAQAPLYRI 571 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + RFKGLGEM+ L +TT+DP R L+++ ++D++ R D M +L+ E R+N++ Sbjct: 782 ITRFKGLGEMDAKDLFKTTMDPERRELLRVILNDDNAVRADEMFTILMGDV-VEPRKNYI 840 >UniRef50_D2NTW6 Type IIA topoisomerase, B subunit n=10 Tax=Actinomycetales RepID=D2NTW6_9MICC Length = 724 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 252/665 (37%), Positives = 356/665 (53%), Gaps = 73/665 (10%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y A + VL GLE VR+RPGMY TD+ H E+IDNSVDEALAG + + VI Sbjct: 27 SSNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSIQVI 86 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+ D S+EV DDGRG+P DI P G+ VE++ +LHAGGKF +Y SGGLHGVG SV Sbjct: 87 LYRDGSVEVRDDGRGIPTDIEPRTGLSGVEVVFTKLHAGGKFGGGSYNASGGLHGVGASV 146 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENG---------------------EKVQDLQVVGTCG 157 VNALS R++V V R + Y ++F +G E LQ+VG Sbjct: 147 VNALSSRLDVQVDRGSKTYQMSFRHGIPGFFESGRTPKPEDPFTPATEGTDALQIVGRAK 206 Query: 158 KRNTGTSVHFWPD-ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD---------EIN 207 + TGT V +W D + F +FS L ++ A L PG+ I +D E+ Sbjct: 207 RGVTGTRVRYWADPQIFTPDAKFSYEDLAARVRQTAFLIPGLRICIRDERRLPGTPGELE 266 Query: 208 NTEQRWCYQDGLNDYL------------------AEAVNGLPTLPE--KPFIGNFAGDTE 247 E+ + Y G+++++ +P L E + + + D E Sbjct: 267 PHEEVFQYDGGISEFVEFLAHDERITDTWRFSGSGSFTETVPVLGEDGRSQLTDVERDCE 326 Query: 248 AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC--EYRNILPRGV 305 VD AL W G E S+VN+I T +GGTH G QGLL MR+ R Sbjct: 327 -VDVALRW-GIGYETTVRSFVNIIATPKGGTHTTGFEQGLLRVMRKHLADNARKYKVGND 384 Query: 306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN---- 361 K+ +D+ VL+V++ +PQF GQTKE L + VS VV DA L Sbjct: 385 KIEKDDVLAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDALKARLESTARAE 444 Query: 362 VQAAELLAEMAISSAQRRM--RAAKKVVRKKLT-SGPALPGKLADCTAQDLNRTELFLVE 418 A L E +S + R+ R K+ R+K ++P KL DC + ++ +ELF+VE Sbjct: 445 KAQAAALCEKVVSEMKTRVSARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELFIVE 504 Query: 419 GDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDL 477 GDSA G+A+ AR YQA++P++GKILNT S +VLA+ E + IG + DL Sbjct: 505 GDSALGTARLARSSSYQALLPIRGKILNTQRASVTDVLANAECAALIQVIGAGSGRTFDL 564 Query: 478 SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL---GK- 533 RYGK+ ++ DAD DG HI TLL LF ++ R L++ G VY A+PPL+R+++ GK Sbjct: 565 DSARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLIEAGRVYAAVPPLHRVEVVRRGKP 624 Query: 534 -EVYYALTEEEKEGVLEQLKRK--KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLT 590 E+ Y +E++ +L+ L+ + K +QR+KGLGEM+ QL ETT+DP R L ++ Sbjct: 625 NEMVYTYSEKQLHELLDSLQEQGVSYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIR 684 Query: 591 IDDED 595 I+D + Sbjct: 685 IEDAE 689 >UniRef50_P78016 DNA topoisomerase 4 subunit B n=3 Tax=Mycoplasma RepID=PARE_MYCPN Length = 635 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 229/637 (35%), Positives = 358/637 (56%), Gaps = 28/637 (4%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDV 57 M Y+ I++L GL+ V++RPGMY TD+ +HL E++DN VDE L+G A + V Sbjct: 1 MKNNYSEANIKILKGLDAVKKRPGMYIGSTDSRGFHHLLWEILDNCVDEVLSGFANTIAV 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 +LHA+ + V D+GRG+P + H + + ++ + LHAGGKF N +Y+ +GGLHGVG S Sbjct: 61 VLHAENQITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGAS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKV-QDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 VVNALS +++V V+R G+VY +ENG K+ Q +G GTSV F PD F Sbjct: 121 VVNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKK 180 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD-GLNDYLAEAVNGLPTLPE 235 F + LK A L +++TF DE + E+ + + G++ YL E + + Sbjct: 181 IHFDSELIRARLKELAFLFKKLQLTFVDETGSGEKEVFFTEAGISQYLDELNADSKQIAQ 240 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 K F+ D E A+ +G + S+ N I T +GG+H RQ + D + +C Sbjct: 241 KIFVSGTEDDIEL--EAVFQFIDGEDEKLLSFANSIRTSEGGSHEASFRQSVGDVINNYC 298 Query: 296 EYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDP--QFAGQTKERLSSRQCAAFVSGVVKD 352 N L R A +I + ++ V + + F GQTK +L S++ A V + + Sbjct: 299 RKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAVVQKLTQK 358 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA----LPGKLADCTAQD 408 F +L +N A+L+ E + + R ++ KK S P L GKLA ++ Sbjct: 359 HFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGKLAPAQSKK 418 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSS-DEVLASQEVHDISVA 467 + ELF+VEGDSAGG+AK RDR QAI+PL+GK+LN ++++ E + ++E+ + Sbjct: 419 VAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEELLTLIFC 478 Query: 468 IGIDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 IG ++ + +Y KI I+ DAD+DG HI LL F ++ + L++ GH+Y+ALPPL Sbjct: 479 IGTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHIYLALPPL 538 Query: 527 YRID-LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 Y+ + K+ Y TE+E LEQ + K NVQR+KGLGEMN QL ETT++P TR+ Sbjct: 539 YKFEGRDKKARYLWTEQE----LEQYRAKHSHFNVQRYKGLGEMNADQLWETTMNPMTRK 594 Query: 586 LVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 L+Q+ +D+ + +++ + M ++E R++W++ Sbjct: 595 LIQVKLDNFIQAEKQINVFMG-----DKTELRKSWIE 626 >UniRef50_Q6GKU0 DNA gyrase subunit B n=143 Tax=cellular organisms RepID=GYRB_STAAR Length = 644 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 251/643 (39%), Positives = 373/643 (58%), Gaps = 25/643 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVI 58 T Y A I+VL GLE VR+RPGMY +T +HL E++DNS+DEALAG+A +++V+ Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 + D ++V D+GRG+PVDI + G PAVE+IL LHAGGKF Y+ SGGLHGVG SV Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSV 130 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDSP 177 VNALS+ +EV V R+ +Y+ A++ G DL+ VGT K TGT + F D E F ++ Sbjct: 131 VNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTDK--TGTVIRFKADGEIFTETT 188 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEI---NNTEQRWCYQDGLNDYLAEAVNGLPTLP 234 ++ L ++ A L G++IT +DE N E + Y+ G+ Y+ + Sbjct: 189 VYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNENKEPIH 248 Query: 235 EKPFIGNFAGDTEAVDWALLWLP-EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 ++P + + D V+ A+ + LLT Y N I T +GGTH +G ++ L + Sbjct: 249 DEPIYIHQSKDDIEVEIAIQYNSGYATNLLT--YANNIHTYEGGTHEDGFKRALTRVLNS 306 Query: 294 FCEYRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 + I+ +LS ED + ++S+K DPQF GQTK +L + + V + + Sbjct: 307 YGLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSE 366 Query: 353 AFILWLNQNVQAAELLAEMAI--SSAQRRMRAAKKVVRKKLTSGPA-LPGKLADCTAQDL 409 F +L +N Q A + E I + A+ + A++V R+K A LPGKLADC+++ Sbjct: 367 HFERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSP 426 Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 E+FLVEGDSAGGS K RD QAI+PL+GKILN + D +L + E+ + A G Sbjct: 427 EECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFG 486 Query: 470 IDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR 528 D DL++ RY KI I+ DAD DG HI TLL F + R L++ G+VY+A PPLY+ Sbjct: 487 TGIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYK 546 Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 + GK+ YY + E + + +L K ++ R+KGLGEMN QL ETT++P R L+Q Sbjct: 547 LTQGKQKYYVYNDRELDKLKSELN-PTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQ 605 Query: 589 LTIDD--EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + ++D E DQ + +M ++ E+RR ++++ A ++ Sbjct: 606 VKLEDAIEADQTFEMLMGDVV-----ENRRQFIEDNAVYANLD 643 >UniRef50_Q83G36 DNA gyrase subunit B-like protein n=2 Tax=Tropheryma whipplei RepID=Q83G36_TROWT Length = 662 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 235/628 (37%), Positives = 337/628 (53%), Gaps = 46/628 (7%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVILHA 61 YNAD I +L GL VR+RPGMY +T + L E+IDNSVDE LAG V++ LH Sbjct: 7 YNADDIALLEGLAAVRKRPGMYIGSTDNHGLAHCLWEIIDNSVDEVLAGFGNVVNITLHG 66 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S V D GRG+PVDI + G+ VEL+ +LHAGGKF Y SGGLHGVG SVVNA Sbjct: 67 DNSFSVQDFGRGIPVDIESKTGLTGVELVFTKLHAGGKFGTGAYFTSGGLHGVGASVVNA 126 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS+++ V V RDG + + F N + L+ TGT V FWPD F S + Sbjct: 127 LSEKLSVEVDRDGMTWVMEFRN-QVTSGLRSKCKIASNVTGTRVRFWPDPLIFGSAEICI 185 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNG------------ 229 L A L PG+ + +D + + ++ G ++ G Sbjct: 186 ESLHQRAMQTAFLVPGLRVNIEDRVLGKSSSYLFEGGCKQFVEHLSAGELITDVLCIRGK 245 Query: 230 ------LPTLPEKPFIGNFAGDTEA----VDWALLWLPEGGELLTESYVNLIPTMQGGTH 279 +P L E GN + VD AL W + E S+VN+I T +GGTH Sbjct: 246 GSFSEAVPVLKET---GNLVISSVERVCDVDIALAWRND-FETHINSFVNVIETPKGGTH 301 Query: 280 VNGLRQGLLDAMREFC--EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 +G Q LL +R + R + + ED++ V+SVK+ +PQF GQTKE L Sbjct: 302 YSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPEPQFEGQTKEVL 361 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAEL-------LAEMAISSAQRRMRAAKKVVRKK 390 + V+ +V D ++ +A+M A R R ++ RK Sbjct: 362 GTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVAQMHFRLAARASRETQR--RKN 419 Query: 391 LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV 450 +LP KL DC + D+N +ELF+VEGDSA G+A++AR+ EYQA++P++GKILN + Sbjct: 420 ALETSSLPAKLVDCRSNDVNESELFIVEGDSALGTARRARNSEYQALLPIRGKILNVQKA 479 Query: 451 SSDEVLASQEVHDISVAIGIDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKH 509 S + LA+ E I IG S+ D++Q RYGK+ I++DAD DG HI LL LF ++ Sbjct: 480 SVADALANAECASIIQVIGAGSGSNFDIAQARYGKVIIMSDADVDGAHIRILLLTLFFRY 539 Query: 510 FRALVKHGHVYVALPPLYRIDL--GKEVYYALTEEEKEGVLEQLKRK--KGKPNVQRFKG 565 + ++ G V+ ALPPL+++ + E Y ++ E E VL +LK++ + + +QR+KG Sbjct: 540 MQPMISSGRVFSALPPLHQVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHREPIQRYKG 599 Query: 566 LGEMNPMQLRETTLDPNTRRLVQLTIDD 593 LGEM+ QL ETT+D + R L+++ + D Sbjct: 600 LGEMDADQLAETTMDRSKRTLLRIRMSD 627 >UniRef50_Q1MQ88 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q1MQ88_LAWIP Length = 799 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 223/538 (41%), Positives = 327/538 (60%), Gaps = 19/538 (3%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y AD+I +L GL+ VR RP MY TDT +HL EVIDNS+DEA+AG R+DV+LH Sbjct: 12 YTADSITILEGLQAVRMRPAMYIGSTDTRGLHHLVYEVIDNSIDEAMAGFCTRIDVVLHL 71 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S+ V D+GRG+PVDIHP+EGVPAV++++ +LHAGGKF N Y+ SGGLHGVG+S VNA Sbjct: 72 DNSITVRDNGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNDTYKVSGGLHGVGLSCVNA 131 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS+++EV + R G + + G +++LQ +G N GT++ F DE F++ +S Sbjct: 132 LSEQLEVTILRGGYRWKQKYSRGVPLENLQRIGESD--NHGTTIRFKADEEIFETTEYSY 189 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGN 241 L + A L G+EI DE + + + G++ ++ + G L I + Sbjct: 190 ETLKRRFEELAYLNKGLEIHCTDERTSETHLFKAEGGIHQFVKDINTGESILHS---IIS 246 Query: 242 FAGDTEAV--DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 E V D+AL + G + T ++ N I T +GGTH+ G + L A+ + + + Sbjct: 247 RESIVEGVMIDFALQY-NAGYKENTLTFANNIRTKEGGTHLAGFKTALTRAINGYIKGQP 305 Query: 300 ILPRGVK---LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 L + +K LS +D+ + VLSVK+ +PQF GQTK +L + + A V G V + Sbjct: 306 DLSKKLKGQTLSGDDVREGLTAVLSVKLPNPQFEGQTKTKLGNSEIAGIVGGAVYTSLDT 365 Query: 357 WLNQNVQAAELLAEMAI--SSAQRRMRAAKKVVRKK-LTSGPALPGKLADCTAQDLNRTE 413 + +N + + + AI + A+ R AK++VR+K ALPGKLADC +++ +E Sbjct: 366 YFQENPKDIRCIIDKAIDAARAREAARRAKELVRRKGALFDNALPGKLADCQSKNPAESE 425 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GID 471 LF+VEGDSAGGSAKQ R+ QAI+PL+GKILN D++LA++E+ + A+ GI Sbjct: 426 LFIVEGDSAGGSAKQGRNPNIQAILPLRGKILNIERTRFDKMLANKEIKALITAMGAGIG 485 Query: 472 PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 + D +LRY KI I+ DAD DG HI TLL F +++ L++ GH+Y+A PPLYR+ Sbjct: 486 EEDTDYQKLRYYKIVIMTDADVDGAHIRTLLLTFFFRNYVGLIERGHLYIAQPPLYRV 543 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 3/62 (4%) Query: 559 NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 N+QR+KGLGEMNP QL TT+DP R L+Q+TI+D ++ + + L+ +R E RR + Sbjct: 730 NIQRYKGLGEMNPEQLWVTTMDPQNRTLLQVTINDAEE--ANETFEQLMG-ERVEPRREF 786 Query: 619 LQ 620 ++ Sbjct: 787 IE 788 >UniRef50_C3XDF7 DNA gyrase subunit B n=5 Tax=Campylobacterales RepID=C3XDF7_9HELI Length = 775 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 227/589 (38%), Positives = 336/589 (57%), Gaps = 32/589 (5%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 T+ Y AD I+VL GLE VR+RPGMY T+T +H+ EV+DNS+DEA+AG K + + Sbjct: 5 TKEYLADNIKVLKGLEAVRKRPGMYIGDTNTNGLHHMIYEVVDNSIDEAMAGFCKNIKIT 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L S + DDGRG+PVD+HP E +PA ++L LHAGGKF Y+ SGGLHGVG+SV Sbjct: 65 LTDKGSAIIEDDGRGIPVDMHPTENMPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS ++ + + ++ ++Y FE G +L+++G K GT++ F+PD + Sbjct: 125 VNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETKKH--GTTIEFFPDPEIMEITE 182 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 F + LT K A L G++I FKDE + ++ + ++ GL+ ++ E +N + + Sbjct: 183 FDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHFEGGLSQFI-EDINKKTLITQ--- 238 Query: 239 IGNFAGDTEAVDWAL---LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 I +F D + L EG + S+VN I T GGTH G R GL A+ + Sbjct: 239 ILSFEATENEYDSEIEIALAYNEGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAILNYI 298 Query: 296 EYR-NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 E N + VK+ +D+ + +++ K+ DPQF GQTK +L S V + + Sbjct: 299 EANANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQKLTYEKI 358 Query: 355 ILWLNQNVQAAELLAEMAISSAQRRMRA--AKKVVRK-KLTSGPALPGKLADCTAQDLNR 411 + +N A+L+ + + +A+ R A A+ + RK S LPGK ADC ++D + Sbjct: 359 SKFFEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQSKDPSE 418 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 E++LVEGDSAGGSAKQ RDR +QAI+PL+GKILN + D +L S+E+ ++ A G Sbjct: 419 CEIYLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMITAFGCG 478 Query: 472 -PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID 530 D + +LRY KI I+ DAD DG HI TLL F ++F+ LV+ G++Y+A PPLY+ Sbjct: 479 IGDEFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYFKPLVQGGYIYIAQPPLYKYK 538 Query: 531 LG-KEVYY----ALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQL 574 KEVY AL++ E +E FKG+G +Q+ Sbjct: 539 RNKKEVYLKDDKALSDFLIENGIEHF----------NFKGIGHNELLQI 577 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 16/100 (16%) Query: 533 KEVYYALTEEEKEGV-----------LEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDP 581 K +Y +TE E E + +E+ RKKG ++ R+KGLGEMN +L ETT+ P Sbjct: 671 KRIYQKITERELEFLEGKDIITGLEEIEEATRKKG--DISRYKGLGEMNKEELWETTMSP 728 Query: 582 NTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 R LVQ+ I EDD+ D M ++ + + E RR ++Q+ Sbjct: 729 QNRTLVQVKI--EDDEMADEMFNIFMGDE-VEPRRQYIQK 765 >UniRef50_Q4AAR9 Topoisomerase IV subunit B n=9 Tax=Mycoplasma RepID=Q4AAR9_MYCHJ Length = 642 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 217/636 (34%), Positives = 354/636 (55%), Gaps = 23/636 (3%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVILH 60 TY+ + +++L GLE VR+RPGMY +T N L Q E+ DN++DEA+AG A + +I++ Sbjct: 2 TYSVEKLKLLKGLEAVRKRPGMYIGSTDKNGLHQLIWEIFDNAIDEAIAGFANEISLIIN 61 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 +D S+E+ D+GRG+P +IH + G VEL+ LH+G KFS Y+ +GGLHGVG SVVN Sbjct: 62 SDNSIEISDNGRGIPTEIHKKTGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVVN 121 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQD-LQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 ALS+++EV + RD +++ +F NG K++ +++G TGT + FWPD + F F Sbjct: 122 ALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSA--TTGTKIRFWPDFSLFSHSEF 179 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 + L+ L ++I F D NN E+++ + G+ ++ N + +K Sbjct: 180 DSEMIISRLRETCFLINNLKINFFDTKNNIEKKFLCERGIESFIEFLNNDQEKIHDKVIT 239 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 V++ ++ E + S+VN + T GG+H NG + G L A+ + + N Sbjct: 240 FKEKMQEIIVEFGFQYVNSQQENII-SFVNNVKTNLGGSHENGFKSGFLKAINTYGQQNN 298 Query: 300 ILPRGVKLSAEDIWDRCAYVLSVKMQDP--QFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 +L L D + VLS+++ + +F GQTK +LS+ V+ + + Sbjct: 299 LLKTKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEEVIFTNLMTF 358 Query: 358 LNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA-----LPGKLADCTAQDLNRT 412 N + A + + + +R ++ ++ K + L GKL ++ Sbjct: 359 FALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTPANSKKAMNR 418 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 ELFLVEG+SAGGSAK AR+RE+QAI+PLKGKI+N + ++L ++E+ I A+G Sbjct: 419 ELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIAIISALGTGI 478 Query: 473 DSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI-D 530 + +L L YGKI I+ DAD+DG HI L+ H R L++ G VY+A PPLYRI + Sbjct: 479 GQNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIAQPPLYRISE 538 Query: 531 LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLT 590 G++ Y EE+ E+ + +QR+KGLGEMN QL +TT+DP R L ++ Sbjct: 539 KGRKDIYIWDEEK----FEKYIKNSTNLQIQRYKGLGEMNANQLWQTTMDPERRTLEKVL 594 Query: 591 IDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 I E+ + + +L+ +R++ R++W+++ + + Sbjct: 595 I--ENYPKVEKNFQILMG-ERADLRKSWIEKNVNFS 627 >UniRef50_A0Q197 DNA topoisomerase IV subunit B n=34 Tax=Clostridium RepID=A0Q197_CLONN Length = 652 Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust. Identities = 240/651 (36%), Positives = 360/651 (55%), Gaps = 48/651 (7%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 +Y+ + L LEPVR RPGMY T T +H E++DNS+DE G+ +V +IL Sbjct: 10 NSYDVTDLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNSIDEIANGYGNKVVLIL 69 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + D+S+ ++D+GRG+P IHP + VE++ LH GGKF+NKNY+ SGGLHGVG +VV Sbjct: 70 NKDKSVTIMDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHGVGAAVV 129 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEK-----------VQDLQVVGTCGKRNTGTSVHFW 168 NALS+ +EV V + G ++ FE E + L++VG + TGT + F Sbjct: 130 NALSEWLEVEVYQKGHIHKQRFEYAEDKSLNKKMPGTPIFPLKIVGDTER--TGTKITFK 187 Query: 169 PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLNDYLAEA 226 PD+ F + F + L+ A G+ + KDE E+ + + GL D++ Sbjct: 188 PDKEVFSTTEFKFEVIDERLQELAFQNKGITLVIKDERKEEVIEKEYHSERGLLDFIDYL 247 Query: 227 VNGLPTLPEKPFIGNFAGDTEAVDWAL-----LWLPEGGELLTESYVNLIPTMQGGTHVN 281 + + P + + G+ E + + + SYVN IPT + GTH Sbjct: 248 NESKIPIHKDPLL--YEGEKEVNSIKVYCEVCMQFTDSSTENIASYVNNIPTTESGTHET 305 Query: 282 GLRQGLLDAMREFCEYRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR 340 G + G+ A +E+ + NI+ K +D+ + +L VK+ +P F GQTK +L + Sbjct: 306 GFKTGMTRAFKEWAKKLNIVKEKDKGFEGDDLREGMTAILRVKISNPIFEGQTKTKLGNN 365 Query: 341 QCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAK--KVVRKKLTSGPA-L 397 + ++ + W+ N + A + A+S+A RR + K +KK+ G A L Sbjct: 366 EAYTVMNELAYIKIGEWIEDNKEIATQIINNAVSAAARREKIKKINDAEKKKVGKGTAPL 425 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLA 457 GK++ CT + E +VEGDSAGGSAKQARDR +Q IMP KGKI+NT + + VLA Sbjct: 426 AGKVSICTLKRPEFCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQRLENVLA 485 Query: 458 SQEVHDISVAIGI----DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRAL 513 S+E+ + AIG + + DD L+Y KI IL+DAD DG HI TL ++ R+L Sbjct: 486 SEELKLFNAAIGTGVLENYNEDD---LKYDKIIILSDADVDGYHIRTLWITYIYRYMRSL 542 Query: 514 VKHGHVYVALPPLYRI----DLGKEVYYALTEEEKEGVLEQLKRKKGKPN-VQRFKGLGE 568 + +GH+Y+ALPPLY++ G+ YA ++EE L K++ GK +QR+KGLGE Sbjct: 543 ITNGHLYIALPPLYKVYKNSKKGEISRYAYSDEE----LASAKKEIGKGALIQRYKGLGE 598 Query: 569 MNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 MNP QL +TTL+P TR L Q+TI ED + + M+ +L+ E RRN++ Sbjct: 599 MNPDQLWDTTLNPETRTLQQITI--EDAAKAEKMISLLMG-DVVEPRRNYM 646 >UniRef50_Q59526 DNA topoisomerase 4 subunit B n=9 Tax=Bacteria RepID=PARE_MYCGA Length = 633 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 233/642 (36%), Positives = 366/642 (57%), Gaps = 28/642 (4%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDV 57 M YN I+VL GLEPVR+RPGMY TDT +HL E+ DN+VDEAL G A +++V Sbjct: 1 MVSNYNEKHIKVLKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEV 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 + D S+ V D+GRG+PV + + V+ + LHAGGKF ++ Y+ SGGLHGVG S Sbjct: 61 VHKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGAS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEK-VQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 VVNALS+++ V V RDG +Y +++G K +Q L+ VG K GT V FWPD T F + Sbjct: 121 VVNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKVGNSTKH--GTIVQFWPDPTIFKN 178 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE--QRWCYQDGLNDYLAEAVNGLPTLP 234 +F+ + L + L G++I F DE NN E Q + +DG+ +YL ++ Sbjct: 179 IQFNPYMIKERLHESSFLFKGLKIVFVDE-NNPELSQTFIAKDGILEYLKYVNENKKSIS 237 Query: 235 EKPFIGNFAGDTE--AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 + I F GD E VD + EL+ S+ N + T +GG+H NG +Q +L+ + Sbjct: 238 K---IIPFKGDYEKIVVDGCFQYTDNESELII-SFANSVKTSEGGSHENGFKQAMLETIN 293 Query: 293 EFC-EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDP--QFAGQTKERLSSRQCAAFVSGV 349 ++ +Y+ I + D+ + + VLSV++ + + GQTK +L +++ V+ + Sbjct: 294 DYSKKYKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVAKI 353 Query: 350 VKDAFILWLNQN-VQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA---LPGKLADCT 405 + +L +N A +L+ + + K KKL S + L GKL Sbjct: 354 LTQQLFYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTPAQ 413 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 ++ + E+FLVEGDSAGG+AK RD+ +QAI+PL+GK++N + ++L ++E+ I Sbjct: 414 QKNPLQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILSII 473 Query: 466 VAIGIDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALP 524 +G ++ ++ L+Y KI I+ DAD+DG HI LL F ++ + L++ G VY+AL Sbjct: 474 SCLGCGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIALA 533 Query: 525 PLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTR 584 PLY+I A ++ + L++L+ K G VQR+KGLGEMN QL TT+DP+ R Sbjct: 534 PLYKISAKNSNKSAFAWDDYQ--LDELRTKYGSYEVQRYKGLGEMNSEQLWTTTMDPSKR 591 Query: 585 RLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 +L+Q++I ++ + + + +L+ S R+NW+ E D + Sbjct: 592 QLIQVSI--QNAAQAERKVSILMGDDAS-IRKNWINENVDFS 630 >UniRef50_B5YGU1 DNA gyrase subunit B n=9 Tax=Bacteria RepID=B5YGU1_THEYD Length = 759 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 227/552 (41%), Positives = 322/552 (58%), Gaps = 14/552 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVIL 59 ++Y A+ I++L GLE VR RP MY +T +HL EV+DNSVDEALAG +++V L Sbjct: 18 ESYKAEHIKILKGLEGVRTRPAMYIGSTGVEGLHHLVYEVVDNSVDEALAGFCNKIEVRL 77 Query: 60 HADQSLEVIDDGRGMPVDIHPE--EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 H D S VID+GRG+P +IHP+ E A+E++L LHAGGKF +K Y+ SGGLHGVG+S Sbjct: 78 HTDGSCSVIDNGRGIPTEIHPDDPEKRTALEIVLTELHAGGKFESKAYKVSGGLHGVGLS 137 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS+ +EV V+RDG+V + G V ++V+G K TGT + F D F+ Sbjct: 138 VVNALSEWLEVEVQRDGKVVRQKYCRGIPVTGVEVIGQTEK--TGTKIKFKADPEIFEVT 195 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 FS L H K + L G++I DE + + + + G+ ++ + G L KP Sbjct: 196 EFSREILAHRFKELSYLNRGLKIILIDERDGYVEEFIKEGGIVSFVEDLNKGKKPLHPKP 255 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 D V+ A+ + EG ++VN I T +GGTH+ G + L + + Sbjct: 256 IYITGQKDRVIVEIAIQY-NEGYSEEILTFVNNINTKEGGTHLVGFKSALTRTINSYAML 314 Query: 298 RNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 +L G + LS ED+ + V+SVK+ +PQF GQTK +L + + V ++ + Sbjct: 315 NGLLKEGKESLSGEDVREGIVGVISVKIPEPQFEGQTKMKLGNSEVKGIVETILNEKLSR 374 Query: 357 WLNQNVQAAELLAEMAISSAQRRMRAAKKVV---RKKLTSGPALPGKLADCTAQDLNRTE 413 WL +N A+ + E A +A+ R A K RK + LPGKLADCT +D + E Sbjct: 375 WLEENPNYAKRIIEKAKDAARAREAAKKAKELTRRKGILEDTTLPGKLADCTEKDPSHAE 434 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GID 471 LF+VEGDSAGGSAKQARDR QA++PL+GKILN + D++L S+E+ + AI GI Sbjct: 435 LFIVEGDSAGGSAKQARDRRSQAVLPLRGKILNVEKARIDKMLTSEEIKTLITAIGGGIG 494 Query: 472 PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 + + +RY KI ++ DAD DG HI TLL F + L++ G++Y+A PPLYRI Sbjct: 495 KEHFEPENVRYHKIILMTDADVDGAHIRTLLLTFFYRQMLPLIEKGYLYIAQPPLYRIKR 554 Query: 532 GKEVYYALTEEE 543 GK Y TE+E Sbjct: 555 GKWERYIQTEDE 566 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/55 (52%), Positives = 39/55 (70%), Gaps = 3/55 (5%) Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA 608 KKG +QR+KGLGEMNP QL ETT+DP R L+Q+T+ ED QR + + +L+ Sbjct: 686 KKG-LTIQRYKGLGEMNPEQLWETTMDPEKRTLLQVTV--EDAQRANEIFTILMG 737 >UniRef50_P0AES7 DNA gyrase subunit B n=740 Tax=root RepID=GYRB_ECO57 Length = 804 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 226/555 (40%), Positives = 330/555 (59%), Gaps = 18/555 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVD 56 M+ +Y++ +I+VL GL+ VR+RPGMY D T +H+ EV+DN++DEALAGH K + Sbjct: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 Query: 57 VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 V +HAD S+ V DDGRG+P IHPEEGV A E+I+ LHAGGKF + +Y+ SGGLHGVG+ Sbjct: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFD 175 SVVNALS+++E+ ++R+G+++ +E+G L V G K TGT V FWP ETF + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTN 178 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 F L L+ + L GV I +D+ + E + Y+ G+ ++ E +N T P Sbjct: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFV-EYLNKNKT-PI 236 Query: 236 KPFIGNFAGDTE--AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 P I F+ + + V+ AL W +G + + N IP GGTH+ G R + + Sbjct: 237 HPNIFYFSTEKDGIGVEVALQW-NDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNA 295 Query: 294 FCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 + + + V + +D + V+SVK+ DP+F+ QTK++L S + + V + + Sbjct: 296 YMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNE 355 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV---RKKLTSGPALPGKLADCTAQDL 409 +L +N A+++ I +A+ R A + RK LPGKLADC +D Sbjct: 356 LLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDP 415 Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI- 468 +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN + D++L+SQEV + A+ Sbjct: 416 ALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALG 475 Query: 469 -GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 GI D + +LRY I I+ DAD DG HI TLL F + +V+ GHVY+A PPLY Sbjct: 476 CGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLY 535 Query: 528 RIDLGKEVYYALTEE 542 ++ GK+ Y +E Sbjct: 536 KVKKGKQEQYIKDDE 550 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 9/66 (13%) Query: 559 NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD---EDDQRTDAMMDMLLAKKRSEDR 615 ++QR+KGLGEMNP QL ETT+DP +RR++++T+ D D T M D + E R Sbjct: 735 SIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAV------EPR 788 Query: 616 RNWLQE 621 R +++E Sbjct: 789 RAFIEE 794 >UniRef50_Q2GD49 DNA gyrase subunit B n=9 Tax=cellular organisms RepID=Q2GD49_NEOSM Length = 783 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 232/575 (40%), Positives = 343/575 (59%), Gaps = 27/575 (4%) Query: 1 MTQT-YNADAIEVLTGLEPVRRRPGMYT-DTTRPNHLGQ---EVIDNSVDEALAGHAKRV 55 M+ T Y AD+I+VL GLE VR+RPGMY DT + L Q EV+DNSVDE+LAG+ + Sbjct: 1 MSNTDYTADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAI 60 Query: 56 DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115 +V++ D S+ V D+GRGMP D+H E GV A E+I+ +LHAGGKF +Y+ SGGLHGVG Sbjct: 61 EVVIDVDGSISVEDNGRGMPTDMHGE-GVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVG 119 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFF 174 +SVVNALS +++ + RDG+V+ FENGE V+ L V G CG + TGT VHF P TF Sbjct: 120 VSVVNALSDWLKLTIYRDGKVHFAEFENGETVRSLSVTGECGDK-TGTLVHFLPSRSTFK 178 Query: 175 DSPRFSVSRLTHVLKAKAVLCPGVEITFKD--EINNTEQRWCYQDGLND----YLAEAVN 228 ++ S S L + + + L PG+ I+ D + ++T + + G + YL + Sbjct: 179 NTTEVSFSTLENRFRELSFLNPGLRISLLDMRKGSSTGKVVFFSSGGTEEFVAYLDRSKQ 238 Query: 229 GLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288 + + P + G D+ A+D ++ W E + + N I GGTH+ LR + Sbjct: 239 PIHSTPIRVVGGV---DSIAIDVSMQWNDSYYENVL-CFTNNIKQKDGGTHLAALRSAMT 294 Query: 289 DAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 M + N++ + V +S ED+ + + +LSVK+ DP+F+ QTKE+L S + + Sbjct: 295 RVMHNYIVKENLIKKDKVVVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPVIE 354 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK----VVRKKLTSGPALPGKLAD 403 +V DA WL +N +A ++A + SA R AAKK RK LPGKLAD Sbjct: 355 KIVSDALASWLEENPSSARVIARKVVESALAR-EAAKKARDLTRRKGGLEITTLPGKLAD 413 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C + +EL +VEGDSAGGSAKQ RDR+ QA++PL+GKILN + +V+ S E+ + Sbjct: 414 CQEKSPELSELLIVEGDSAGGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGN 473 Query: 464 ISVAIG--IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYV 521 + A+G I + ++ ++RY KI I+ DAD DGLHI TLL F ++ R +V+ G++Y+ Sbjct: 474 LIAALGTSIGEEEFNIDKIRYHKIIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYI 533 Query: 522 ALPPLYRI-DLGKEVYYALTEEEKEGVLEQLKRKK 555 A PLY++ G +VY +E +L+++ + K Sbjct: 534 AQTPLYKVMRKGADVYLRDDAALEEYLLDRIVKGK 568 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 2/49 (4%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA 608 +QRFKGLGEMNP QL TTLDP+ R + ++TI E+ D M ML+ Sbjct: 715 LQRFKGLGEMNPEQLWSTTLDPSNRTIFKVTI--EEAAVADQMCSMLMG 761 >UniRef50_Q89B37 DNA gyrase subunit B n=30 Tax=Proteobacteria RepID=GYRB_BUCBP Length = 804 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 207/548 (37%), Positives = 324/548 (59%), Gaps = 14/548 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVD 56 M TY + I++L GL+ V++RPGMY D T +H+ EV+DNS+DEALAG K + Sbjct: 1 MKNTYTSSNIKILKGLDAVKKRPGMYIGNTDDGTGLHHMVFEVVDNSIDEALAGFCKNII 60 Query: 57 VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 V +H D S+ + DDGRG+P DIH EEG+ A E+I+ LHAGGKF N +Y+ SGGLHGVG+ Sbjct: 61 VTIHDDNSISIQDDGRGIPTDIHDEEGISAAEVIMTVLHAGGKFDNTSYKVSGGLHGVGV 120 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFD 175 SVVNALSK++E+ + RD ++Y ++NG L ++G + TGT + FWP+ E F + Sbjct: 121 SVVNALSKKLELFIYRDKKIYYQIYKNGYPKNTLSIIGYT--KITGTKIRFWPNLEIFTN 178 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 +F+ L+ L+ + L V I D + + + Q GL +++ + Sbjct: 179 VTQFNWEILSKRLRELSFLNSNVSIYLDDAKKHINENFYQQGGLKEFIIYLNKNKKPIHS 238 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 K F + + V+ A+ W +G + Y N IP GGTH++G R L M + Sbjct: 239 KIFYFSSKKNNVEVEIAMQW-NKGFQENIYCYTNNIPQQDGGTHLSGFRSALTRTMNNYL 297 Query: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 + + + + + +D + ++S+K+ DP+F+ QTK +L S + + + +V + Sbjct: 298 DKEGYIKKNKINIIGDDTREGLTAIISIKINDPKFSSQTKNKLVSSEVKSALESLVNEFL 357 Query: 355 ILWLNQNVQAAELLAEMAISSA--QRRMRAAKKVVRKKLTSG-PALPGKLADCTAQDLNR 411 + +L +N Q ++ + I S+ + R A+++ RKK T LPGKL+DC +D Sbjct: 358 MEFLLENPQESKNIVTKIIESSRVRNAARRAREMTRKKGTLDLIGLPGKLSDCQERDPAL 417 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--G 469 +E++LVEGDSAGGSAKQAR+R+ QAI+PLKGKILN + +++L+SQEV + A+ G Sbjct: 418 SEIYLVEGDSAGGSAKQARNRKNQAILPLKGKILNVEKARYEKMLSSQEVTTLITALGCG 477 Query: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 I + + +LRY +I I+ DAD DG HI TLL F ++ +++ G++Y+A PPLY++ Sbjct: 478 IGKNEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRYMPEIIQRGYLYIAQPPLYKV 537 Query: 530 DLGKEVYY 537 + Y Sbjct: 538 TKNNKTRY 545 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 37/49 (75%), Gaps = 2/49 (4%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA 608 +QR+KGLGEMNP QL +TT++P TRR++++T+ + D T+ + + L+ Sbjct: 736 IQRYKGLGEMNPEQLWKTTMNPETRRMLKITLHNIDT--TNKLFNTLMG 782 >UniRef50_B1ZTK2 DNA gyrase subunit B n=194 Tax=cellular organisms RepID=B1ZTK2_OPITP Length = 861 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 224/570 (39%), Positives = 322/570 (56%), Gaps = 24/570 (4%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y+A I+ L GLE VR+RP MY T +H EV+DNSVDEALAG A + V + Sbjct: 18 EAYDASKIQKLEGLEGVRKRPDMYIGDTNERGLHHCVFEVVDNSVDEALAGFASLIVVTI 77 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S + DDGRG+PVD+HP +PA+EL+L LHAGGKF YQ SGGLHGVG V Sbjct: 78 HLDGSCSIEDDGRGIPVDMHPVYKIPALELVLTNLHAGGKFGKGAYQVSGGLHGVGAKCV 137 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR- 178 NA+S+ E VRR G+VY + FE G Q +QV+G K TGT + F PD F + R Sbjct: 138 NAVSEWFEAEVRRGGKVYQMRFEQGITTQKMQVIGDTKK--TGTKITFKPDPEIFKTTRE 195 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP- 237 F L+ L+ A L PGV I DE + R+ ++DG+ +++ + +KP Sbjct: 196 FQYEILSKRLRELAFLNPGVHIELADERSQKGDRFYFRDGITEFVRYLNQNKNVVHDKPI 255 Query: 238 -FIGNFAGDTEA------VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 F + +T A VD ++ + + + +Y N I ++GGTH++G R L Sbjct: 256 TFSDSVPNETNAALPNIVVDVSMQYNDSYNDQVF-AYANSIYNIEGGTHLSGFRTALTRV 314 Query: 291 MREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 + F N+L + ++ +D+ + V+SVK+ +P+F GQTK +LS+ + V + Sbjct: 315 VNNFARANNLLKEKDPSITGDDVREGLVAVISVKVPEPRFEGQTKTKLSNGEIDGIVQRI 374 Query: 350 VKDAFILWLNQNVQAAELLAEMAIS--SAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQ 407 V + + N A+ + + ++ A+ R A++ VRK SG LPGKLADC+ + Sbjct: 375 VGEKLRFYFEANTNIAKRIIDKTLNAARAREAARKARETVRKGALSGGGLPGKLADCSER 434 Query: 408 DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVA 467 D EL++VEGDSAGGSAKQ RDR YQAI+PL+GK++N + D+VLA++E+ + A Sbjct: 435 DPALCELYIVEGDSAGGSAKQGRDRRYQAILPLRGKVINVEKARLDKVLANEEIRTLITA 494 Query: 468 IGI---DPDSD---DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYV 521 G D + D D + RY K+ I+ DAD DG HI TLL + R L G VY+ Sbjct: 495 FGTGIGDHEGDGAFDGDKARYHKVIIMTDADVDGSHIRTLLLTFLYRQMRGLFDRGFVYI 554 Query: 522 ALPPLYRIDLGKEVYYALTEEEKEGVLEQL 551 A PPLY+I K Y +++ +L +L Sbjct: 555 AQPPLYKIKRKKREQYIDNDDQLNRILLEL 584 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 45/63 (71%), Gaps = 3/63 (4%) Query: 559 NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 ++QR+KGLGEMNP QL ETT+DP RRL++++I+D + DA+ +L+ + RR + Sbjct: 792 SIQRYKGLGEMNPKQLFETTMDPEKRRLLKVSINDA--AKADALFTLLMGDE-VPPRRQF 848 Query: 619 LQE 621 +++ Sbjct: 849 IED 851 >UniRef50_A3EQC0 DNA gyrase subunit B n=7 Tax=Bacteria RepID=A3EQC0_9BACT Length = 818 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 213/558 (38%), Positives = 314/558 (56%), Gaps = 12/558 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y A+ I VL GLE VR RPGMY +T +HL E++DNSVDEALAGH + + + Sbjct: 9 EEYTAEHIRVLEGLEAVRVRPGMYIGSTGIDGLHHLVYELVDNSVDEALAGHCSEIHITI 68 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D+S+ V D+GRG+P +H E+ A E++L LHAGGKF+N Y+ SGGLHGVG+SVV Sbjct: 69 HPDRSVTVADNGRGIPTGMHAEQKRSAAEVVLTVLHAGGKFNNNLYKVSGGLHGVGVSVV 128 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS+ + + + ++G ++ + G L V G +R GT + FWPD T ++ +F Sbjct: 129 NALSETLFLEIHQNGLIHRQTYHKGTPDAPLAVFGETTQR--GTIIRFWPDMTIMETDQF 186 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 S L H + A L P + I KDE E+ + ++ G+ +++ TL + F Sbjct: 187 SFDTLAHRFRELAFLNPVLTIHLKDEETLREETFHFEGGVQSFVSFLNENKKTLHDVLFF 246 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 D + A + + N I T +GGTHV G R + + F + Sbjct: 247 RKTLEDGSQFEVAFQYQESTENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQ 306 Query: 300 ILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLN 359 L +G ++ ED+ + ++SV++ PQF GQTK +L S A + + +A Sbjct: 307 -LNKGEEVRGEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFE 365 Query: 360 QNVQAAELLAEMAISSAQRR--MRAAKKVV-RKKLTSGPALPGKLADCTAQDLNRTELFL 416 ++ A+ +AE A+ +AQ R R AK + RK + G LPGKLADC D ++EL++ Sbjct: 366 EDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYI 425 Query: 417 VEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSS-DEVLASQEVHDISVAIGIDPDSD 475 VEGDSAGGSAKQ RDR +QAI+PLKGKILN + ++ + + EV + A+G + Sbjct: 426 VEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEE 485 Query: 476 DLSQ--LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 + S+ LRY KI I+ DAD DG HI TLL F +H L+ VY+A PPLY++ G+ Sbjct: 486 EFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIAQPPLYKVSYGR 545 Query: 534 EVYYALTEEEKEGVLEQL 551 + Y L +E + + +L Sbjct: 546 QERYLLNDEALQAYILEL 563 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 2/57 (3%) Query: 557 KPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD--EDDQRTDAMMDMLLAKKR 611 K ++QR+KGLGEMNP QL ETT+DP+ R L++++I D E D+ +M +A +R Sbjct: 747 KLSIQRYKGLGEMNPEQLWETTMDPSRRTLLKVSIPDYVEADRVFTTLMGEQVAPRR 803 >UniRef50_O51859 DNA gyrase subunit B n=208 Tax=Bacteria RepID=GYRB_VIBPA Length = 805 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 221/554 (39%), Positives = 318/554 (57%), Gaps = 15/554 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVD 56 M++ Y++ +I+VL GL+ VR+RPGMY D T +H+ EV+DNS+DEALAGH K + Sbjct: 1 MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIV 60 Query: 57 VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 V +H D S+ V DDGRG+P ++HPEE V A E+I+ LHAGGKF + +Y+ SGGLHGVG+ Sbjct: 61 VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALS++V + + R G ++ + +GE L VVG K TGT + FWP F + Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDTDK--TGTQIRFWPSAETFSN 178 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ-RWCYQDGLNDYLAEAVNGLPTLPE 235 F L L+ + L GV I DE +Q + Y+ G+ ++ + E Sbjct: 179 TEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQDHFMYEGGIQAFVQHLNTNKTPIIE 238 Query: 236 KPFIGNFA-GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 K F + D +V+ A+ W +G + + N IP GGTH+ G R L + F Sbjct: 239 KIFHFDLEREDGISVEVAMQW-NDGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSF 297 Query: 295 CEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 + + S +D + V+SVK+ DP+F+ QTK++L S + + V + + Sbjct: 298 MDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEK 357 Query: 354 FILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV---RKKLTSGPALPGKLADCTAQDLN 410 +L +N A+++ I +A+ R A K RK LPGKLADC +D Sbjct: 358 LSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 417 Query: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI-- 468 +EL++VEGDSAGGSAKQ R+R+ QAI+PLKGKILN + D++L+SQEV + A+ Sbjct: 418 LSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 469 GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR 528 GI D + +LRY I I+ DAD DG HI TLL F + L++ G+VY+A PPLY+ Sbjct: 478 GIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYK 537 Query: 529 IDLGKEVYYALTEE 542 + GK+ Y EE Sbjct: 538 VKKGKQEQYIKDEE 551 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 3/61 (4%) Query: 561 QRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 QR+KGLGEMNP QL ETT+DP TRR++Q+TI ED D + L+ + E RR++++ Sbjct: 738 QRYKGLGEMNPDQLWETTMDPETRRMMQVTI--EDAVGADQLFTTLMGDQ-VEPRRHFIE 794 Query: 621 E 621 E Sbjct: 795 E 795 >UniRef50_B6IVV7 DNA gyrase subunit B n=192 Tax=cellular organisms RepID=B6IVV7_RHOCS Length = 876 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 230/565 (40%), Positives = 322/565 (56%), Gaps = 35/565 (6%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y A +I+VL GL+ VR+RPGMY D + +H+ EV+DN++DEALAG+A RV+V Sbjct: 16 EEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYADRVEVT 75 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+AD S+ V D+GRG+PVDIHP EGV A E+I+ +LHAGGKF +Y+ SGGLHGVG+SV Sbjct: 76 LNADGSVTVRDNGRGIPVDIHPGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 135 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGT---------CGKRNTGTSVHFWP 169 VNALS+ + + V R G+V+ + F +G+ V L VG G+ TGT V F P Sbjct: 136 VNALSETLFLRVWRKGRVWEMTFRHGDAVAPLADVGAAPVVASGPRAGQPLTGTEVTFLP 195 Query: 170 DETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE--INNTEQRWCYQDGLNDYL---- 223 + F F L H + A L GV + F D + Y+ GL ++ Sbjct: 196 SKQTFTKTEFDFQTLEHRFRELAFLNSGVLLVFTDARGVEPKVTELFYEGGLEAFVQYLD 255 Query: 224 -AEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTES---YVNLIPTMQGGTH 279 ++A P++ + + G T V+ AL W + ES + N IP GGTH Sbjct: 256 RSKAALHKPSIAMRGERVSDLGTTVTVEVALQW----NDSYHESCLCFTNNIPQRDGGTH 311 Query: 280 VNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLS 338 + G R L + ++ E IL + V LS +D+ + VLSVK+ DP+F+ QTK++L Sbjct: 312 LAGFRAALTRTINKYAEESGILKKEKVALSGDDMREGLTCVLSVKVPDPKFSSQTKDKLV 371 Query: 339 SRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV---RKKLTSGP 395 S + V VV DA W ++ A + + +A R A + RK Sbjct: 372 SSEVRPVVETVVADALATWFEEHPADARRIVGKVVEAAAAREAARRARELTRRKGALDMA 431 Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEV 455 +LPGKLADC +D +ELF+VEGDSAGGSAKQ R R++QAI+PL+GKILN D++ Sbjct: 432 SLPGKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVERARFDKM 491 Query: 456 LASQEVHDISVAI--GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRAL 513 L+S E+ + A+ GI + D + RY KI I+ DAD DG HI TLL F + AL Sbjct: 492 LSSAEIGTLIAALGTGIGREEFDPDKARYHKIIIMTDADVDGAHIRTLLLTFFYRQMPAL 551 Query: 514 VKHGHVYVALPPLYRIDLG--KEVY 536 ++ G++Y+A PPLYR+ G KE Y Sbjct: 552 IERGYLYIAQPPLYRVKRGTAKERY 576 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 7/64 (10%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTID--DEDDQRTDAMMDMLLAKKRSEDRRN 617 +QR+KGLGEMNP QL ETTLDP R L+Q+ + DE ++ +M L+ E RR+ Sbjct: 808 IQRYKGLGEMNPDQLWETTLDPANRTLLQVKVSHADEAEEVFSTLMGDLV-----EPRRD 862 Query: 618 WLQE 621 ++QE Sbjct: 863 FIQE 866 >UniRef50_A6DH73 DNA gyrase subunit B n=7 Tax=cellular organisms RepID=A6DH73_9BACT Length = 838 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 210/537 (39%), Positives = 322/537 (59%), Gaps = 17/537 (3%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y AD+I V+ GLE VR+RP MY T +HL EV+DNS+DEALAGH + V LH Sbjct: 12 YGADSISVMKGLEAVRKRPSMYIGDTNERGLHHLVYEVVDNSIDEALAGHCNNITVKLHI 71 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S+ V+DDGRG+PV+IH EEG+PAVEL+L +LHAGGKF +Y+ SGGLHGVG+S VNA Sbjct: 72 DNSVTVVDDGRGIPVNIHEEEGIPAVELVLTKLHAGGKFDKDSYKVSGGLHGVGVSCVNA 131 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDSPRFS 180 LS+ +EV V RD ++ I FE G L+ +G TGT V F PD E F ++ + Sbjct: 132 LSEWMEVKVHRDETLHFIRFERGLTETSLKTIGHTNI--TGTEVIFKPDFEIFTETLIYK 189 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQR---WCYQDGLNDYLAEAVNGLPTLPEKP 237 L L+ A L PG+ I F DE +R + + G+ +++ +G + + Sbjct: 190 WDILAKRLRELAFLNPGITINFIDERAEDGERRETFYFPGGIGEFVKHLNDGKTVVTDTV 249 Query: 238 FIGNFAGDTEAVDWALLW-LPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 F+ + + V + + +G + SY N I T++GGTH+ G + L ++ + + Sbjct: 250 ---TFSTEKDGVTADVSFQYHDGFQENIYSYCNNIHTIEGGTHLAGFQTALTASINSYMK 306 Query: 297 YRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 + +S D+ + ++SVK+ +PQF GQTK +L + + + V +V +F Sbjct: 307 NDSKFKNEKNVSGTDVREGLTAIISVKVPEPQFEGQTKTKLGNNEVRSIVRAIVSTSFNE 366 Query: 357 WLNQNVQAAELLAE--MAISSAQRRMRAAKKVVRK-KLTSGPALPGKLADCTAQDLNRTE 413 +L +N +AA+++ E + + A A++++RK + G A GKL+ C++++ + E Sbjct: 367 FLEENPKAAKVVVEKALLANRASAAALRARQLIRKDNVLEGFADAGKLSGCSSKNPDECE 426 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD 473 +F+VEGDSAGGSAKQ R+ E QAI+PL+GK++N + D+V A+ E+ + AIG Sbjct: 427 IFIVEGDSAGGSAKQGRNSEVQAILPLRGKLINVEKARIDKVFANTEIGSLISAIGCGVG 486 Query: 474 SD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 ++ D+ ++RY KI I+ DAD DG HI TLL F + + L++ G++YVA PPLY++ Sbjct: 487 NEFDVEKIRYKKIVIMTDADVDGSHIMTLLLTFFFRQMKPLIEAGYIYVAQPPLYKV 543 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 3/62 (4%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 +QR+KGLGEMN QL ETT+DP R L+Q+T+ ED + M +L+ E RR+++ Sbjct: 770 LQRYKGLGEMNADQLWETTMDPTRRDLLQVTM--EDAVEAERMFSLLMGDV-VEPRRHFI 826 Query: 620 QE 621 ++ Sbjct: 827 EK 828 >UniRef50_UPI0001A7B046 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Arabidopsis thaliana RepID=UPI0001A7B046 Length = 693 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/646 (36%), Positives = 357/646 (55%), Gaps = 57/646 (8%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVI 58 ++ Y+++ I+VL GL+PVR+RPGMY +T +HL E++DN++DEA AG A ++DV+ Sbjct: 14 SKDYSSEHIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGFASKIDVV 73 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN--YQFSGGLHGVGI 116 LH+D S+ + D+GRG+P D+HP G ++E +L LHAGGKF K+ Y SGGLHGVG+ Sbjct: 74 LHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVGL 133 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDL--QVVGTCGKRNTGTSVHFWPDET-- 172 SVVNALS+ +EV VRRDG + + G+ V L V+ + GT + FWPD+ Sbjct: 134 SVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEGF 193 Query: 173 --FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ----RWCYQDGLNDYLA-E 225 F + +F + + ++ A L P V I+ K E ++ E+ + Y GL +Y++ Sbjct: 194 ALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWL 253 Query: 226 AVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 285 + P F G T VD +L W + Y N I T+ GGTH+ G++ Sbjct: 254 NTDKKPLHDVLGFRKEINGST--VDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKA 311 Query: 286 GLLDAMREFCE-----------------------YRNILPR----------GVKLSAEDI 312 L + + Y + L R + LS E + Sbjct: 312 SLTRTLNSLAKKLKVIKVKGYIIYSSPWIETKFKYSSALKRHALRTINNEKDISLSGEHV 371 Query: 313 WDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMA 372 + ++SVK+ +P+F GQTK RL + + V V++ +L + E + + Sbjct: 372 REGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKS 431 Query: 373 ISSAQRRMRAAK--KVVRKKLTSGPAL-PGKLADCTAQDLNRTELFLVEGDSAGGSAKQA 429 +++ + + A + ++VR K + PGKLADC++ D +E+F+VEGDSAGGSAKQ Sbjct: 432 LNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQG 491 Query: 430 RDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQ--LRYGKICI 487 RDR +QAI+PL+GKILN + ++E+ ++ + +G+ +D ++ LRY KI I Sbjct: 492 RDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIII 551 Query: 488 LADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGV 547 L DAD DG HI TLL F ++ RAL G +YV +PPL++++ GK+ +Y + + + Sbjct: 552 LTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKI 611 Query: 548 LEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 N+QRFKGLGEM P QL ETT++P+TR L QL +DD Sbjct: 612 TASFP-GNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDD 656 >UniRef50_A6G5S5 DNA gyrase subunit B n=11 Tax=Bacteria RepID=A6G5S5_9DELT Length = 872 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 232/574 (40%), Positives = 327/574 (56%), Gaps = 37/574 (6%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y+ +I L GLE VR+RPGMY TD T + + E++DNS+DEALAGH K++ +++H Sbjct: 35 YDESSISHLEGLEAVRKRPGMYIGDTDVTGLHKMVFEILDNSIDEALAGHCKQIQIVIHE 94 Query: 62 DQSLEVIDDGRGMPVDIHPEEG--VPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D+S+ V DDGRG+P EG VPA + +LH GGKF N Y+ SGGLHGVG++VV Sbjct: 95 DESISVEDDGRGIPTGPMEVEGKMVPAAIAVFTKLHVGGKFDNAAYKVSGGLHGVGVTVV 154 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS +E+ ++R+G+V+ FE GE ++L VVG R GT V F D + R Sbjct: 155 NALSDWLELEIKREGKVFTARFERGEVARELDVVGETEAR--GTKVTFHADPLIYTGVRV 212 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKD---EINNTEQRWCYQDG------LNDYLAEAVNGL 230 L+ + + L GV IT D IN ++R DG + L + Sbjct: 213 DFDTLSSRFRELSYLTEGVNITLTDLRPTINGEKKREQSFDGEGGVASFVELLTAKRTRI 272 Query: 231 PTLPE----KPFIGNFAG-DTE-AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLR 284 + E PF F G D E V AL W E++ Y N I GGTH+ GLR Sbjct: 273 GAMIELRSQVPF--EFEGQDHELGVQVALQWTDAYHEMV-HCYTNNIANRDGGTHLTGLR 329 Query: 285 QGLLDAMREFCEYRNILPRGVK--LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQC 342 L + + +N+L +G K L+ ED+ + ++SVK DP+F QTKE+L S + Sbjct: 330 TSLTRVVNGYAGDKNLL-KGHKGSLAGEDVREGLVAIISVKHPDPKFNSQTKEKLVSSEV 388 Query: 343 AAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA---KKVVRKKLTSGPALPG 399 A V V +A + + A+L+ E A+ +A+ R A + + RK + G +LPG Sbjct: 389 TALVGTAVTEALSRHFEEKPKDAKLVVEKALLAARARAAARKARETITRKGVLDGLSLPG 448 Query: 400 KLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQ 459 KLADC +D ELF+VEGDSAGGSAKQ RDR+ QAI+PL+GKILN + D++L+SQ Sbjct: 449 KLADCQEKDPELAELFIVEGDSAGGSAKQGRDRKVQAILPLRGKILNVEKARIDKILSSQ 508 Query: 460 EVHDISVAI--GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 E+ + A+ GI D+ + +LRY KI I+ DAD DG HI TLL F +HF +++ G Sbjct: 509 EIVTLITALGTGIGEDTYSIDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRHFVEIIERG 568 Query: 518 HVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQL 551 ++YVA PPLY++ GK+ Y + EG L++ Sbjct: 569 YLYVAQPPLYKVKAGKKERYI----KNEGALDEF 598 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 2/66 (3%) Query: 559 NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDED--DQRTDAMMDMLLAKKRSEDRR 616 ++QR+KGLGEMNP QL ETT+DP R L+Q+ I ++D D+ +M +A +R Sbjct: 803 SIQRYKGLGEMNPDQLWETTMDPENRELLQIKIAEKDIADEVFTVLMGDEVAPRREFITE 862 Query: 617 NWLQEK 622 N L + Sbjct: 863 NALNTR 868 >UniRef50_D0WQJ3 Putative DNA gyrase subunit B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQJ3_9ACTO Length = 735 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 265/685 (38%), Positives = 375/685 (54%), Gaps = 97/685 (14%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 ++Y A ++VL GLE VR+RPGMY TD+ H E+IDN+VDEAL GHA V+V L Sbjct: 16 ESYTARHLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAVDEALEGHADAVEVRL 75 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 +AD S+EV D+GRG+PVD P G+ VE++ +LHAGGKF +Y SGGLHGVG SVV Sbjct: 76 YADGSVEVRDNGRGVPVDEVPGVGLSGVEVVYTKLHAGGKFGGGSYGSSGGLHGVGASVV 135 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGE--KVQD-------------------LQVVGTCGK 158 NALS+R++V V R G+ Y + F GE + D L VVG K Sbjct: 136 NALSERMDVQVDRGGKTYQMQFHRGEPGRFSDGASGPDPRAPFSAFTESSVLDVVGKVAK 195 Query: 159 RNTGTSVHFWPD-ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN---------- 207 +GT V +W D E F S FS L + A L PG+ I+ DE Sbjct: 196 NKSGTRVRYWADPEIFLASAAFSYEELVERARQTAFLVPGLTISLVDEREGAAGENAAGE 255 Query: 208 NTE---------------QRWCYQDGLNDYL-----------AEAVNGLPTLPEK-PFIG 240 N E + + + G D++ + G T EK P + Sbjct: 256 NAEGEGDEGQAPHEGPRTETFRFDGGTVDFVDFLAPDAAVTATMRLTGEGTFAEKVPVLD 315 Query: 241 NFAGD--------TEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 +G AVD AL W + E ES+VN+I T GGTH +G QGL+ +R Sbjct: 316 AESGHLVSREVERAVAVDVALRWGKDY-ETRVESFVNIIRTPGGGTHQSGFEQGLMKVVR 374 Query: 293 EFCEYRNILPRGVKLSA-------EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 345 E + R +K+SA +D+ V++V++ +PQF GQTKE L + Sbjct: 375 SLVESNS---RRLKMSAKDPRIEKDDVLAGLTAVVTVRLPEPQFEGQTKEILGTSAVRGI 431 Query: 346 VSGVVKDAF--ILWLNQNVQAAEL--LAEMAISSAQRRM--RAAKKVVRKK-LTSGPALP 398 VSGVV+ IL ++ Q E L E ++ + R+ R K++ R+K +LP Sbjct: 432 VSGVVERELGAILGSSKRDQKTETSRLLEKVVAEMRARVTARMHKEISRRKNALEASSLP 491 Query: 399 GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAS 458 KLADC ++D+ TELF+VEGDSA G+AK AR E+QA++P++GKILN + S+ ++L + Sbjct: 492 AKLADCRSEDVAETELFIVEGDSALGTAKLARSSEFQALLPIRGKILNVQKASTADILKN 551 Query: 459 QEVHDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 +EV +I +G + DL RYGK+ ++ DAD DG HI TLL LF ++ R LV+ G Sbjct: 552 KEVSEIIQVVGAGSGRTFDLPAARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLVQEG 611 Query: 518 HVYVALPPLYRIDL-----GKEVY-YALTEEEKEGVLEQLKR--KKGKPNVQRFKGLGEM 569 VY A+PPL+RI++ GK+ Y Y +E++ L +L+R K + +QR+KGLGEM Sbjct: 612 RVYAAVPPLHRIEVSGGKGGKKSYIYTYSEDQLHAELRKLERAGKSYREPIQRYKGLGEM 671 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDE 594 + QL ETT+DP+ R L ++ ++DE Sbjct: 672 DAHQLAETTMDPSRRTLRRIRMEDE 696 >UniRef50_D2R8B1 DNA gyrase, B subunit n=80 Tax=Bacteria RepID=D2R8B1_9PLAN Length = 830 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 226/557 (40%), Positives = 328/557 (58%), Gaps = 26/557 (4%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTD--TTRP-NHLGQEVIDNSVDEALAGHAKRVDVILHA 61 YNA++I+ L+ LE VR RP MY T R +HL EV+DNS+DEA+AGHAK+V VI++ Sbjct: 14 YNAESIKHLSDLEHVRLRPAMYIGDITARGLHHLVYEVVDNSIDEAMAGHAKQVSVIVNT 73 Query: 62 DQSLEVIDDGRGMPVDIHPE----EG--VPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115 D S+ V DDGRG+PV+ H + EG V +E ++ +L GGKF +Y+ SGGLHGVG Sbjct: 74 DGSVTVEDDGRGIPVERHEQLSASEGRDVSTLEGVMTKLKFGGKFDKDSYKTSGGLHGVG 133 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 ++VVN LS+ EV V R G++Y ++E G ++ +G+ + TGT F PD T F Sbjct: 134 VTVVNFLSQWAEVQVCRGGKIYQQSYETGAPTGPVREIGSTDR--TGTKTTFKPDGTIFQ 191 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 + ++ L L+ A L GV I FKDE N +CY+ G+ +++ + Sbjct: 192 TTKYQYDILHKRLQELAFLNSGVRIKFKDERNGEGAEFCYERGIIEFIEHLNRASDVIHS 251 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 DT + AL + E E L SYVN I T++GGTHV+G R L + + Sbjct: 252 DVIYLRGEVDTVGFEIALQYSAEYTENL-HSYVNNIHTVEGGTHVSGFRSALTRTLNAYG 310 Query: 296 E----YRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 351 + +++I P G +D + V+SV++ PQF GQTK +L + + V+G V Sbjct: 311 KKEGLFKDITPTG-----DDFREGLTAVISVRVAHPQFEGQTKTKLGNGEVDGIVAGAVN 365 Query: 352 DAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV----RKKLTSGPALPGKLADCTAQ 407 + +L +N + A+++ + +A+ R A K RK G LPGKL DC ++ Sbjct: 366 EFLAKFLEENPKTAKIIVRKGVLAAEAREAARKAKEVLRSRKNALGGGGLPGKLRDCISK 425 Query: 408 DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVA 467 ++ R EL+LVEGDSAGGSA+ R R++QAI+PL+GKI+N ++ D+VLA++EV + A Sbjct: 426 EMERCELYLVEGDSAGGSAEGGRLRDFQAILPLRGKIINAYKSREDKVLANEEVQSMIQA 485 Query: 468 IGIDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 IG ++ DL++ RY KI I+ DAD DG HI TLL F + +LV +GHVYVA PPL Sbjct: 486 IGTGIGAEIDLTKRRYNKIIIMTDADVDGSHIRTLLLCFFYRQMYSLVANGHVYVAQPPL 545 Query: 527 YRIDLGKEVYYALTEEE 543 +R+ KE YY T+EE Sbjct: 546 FRVRSKKETYYVQTDEE 562 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 11/92 (11%) Query: 537 YALTEEEKEGVLEQLK------RKKGKP--NVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 Y L E E L++L+ R+ G+ +V RFKGLGEMN +LR+TTLDP R LVQ Sbjct: 731 YILRRGENEIPLKELRTLVASIREMGQKGMSVTRFKGLGEMNAEELRDTTLDPKNRTLVQ 790 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 +++ D D M +L+ +K E RR +++ Sbjct: 791 VSM--RDAGAADDMFRVLMGEK-VEPRRQFIE 819 >UniRef50_B2UCF3 DNA gyrase subunit B n=47 Tax=Proteobacteria RepID=B2UCF3_RALPJ Length = 842 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 225/565 (39%), Positives = 317/565 (56%), Gaps = 34/565 (6%) Query: 4 TYNADAIEVLTGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 +Y+A +I++L GLE VR+RPGMY +D T +HL EV+DNS+DEALAGH + V + Sbjct: 16 SYDAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHCTEIQVTI 75 Query: 60 HADQSLEVIDDGRGMPVDIH----PEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115 H D S+ VID+GRG+P I E A E+ + LHAGGKF+ +Y+ SGGLHGVG Sbjct: 76 HTDNSISVIDNGRGIPTGIKFDDKHEPKRSATEIAMTELHAGGKFNQNSYKVSGGLHGVG 135 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENG-------EKVQD----------LQVVGTCGK 158 +S VN LSK ++V VR+ G+V+ I F G E VQ L+V+GT K Sbjct: 136 VSCVNGLSKWMKVTVRQGGKVHYIEFAQGVPQNRLIETVQGPDGQMVEVSPLRVLGTTDK 195 Query: 159 RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG 218 R GT VHF DE F + + L+ ++ + L GV I D+ E+ + + G Sbjct: 196 R--GTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIRLTDQRTGKEEDFAFSGG 253 Query: 219 LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGT 278 + ++ L F D AV+ ++ W E + + N IP GGT Sbjct: 254 VKGFVEYINKNKTVLHPTIFFAAGEKDGVAVEVSMQWNDAYNEQVL-CFTNNIPQRDGGT 312 Query: 279 HVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 H+ GLR + + ++ I + V S +D+ + VLSVK+ +P+F+ QTK++L Sbjct: 313 HLTGLRAAMTRVINKYIADNEIAKKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKDKL 372 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV---RKKLTSG 394 S + V VV A +L + A+++ + +A+ R A K RK + G Sbjct: 373 VSSEVRLPVEEVVAKALSDFLLETPVDAKIICGKIVEAARAREAARKAREMTRRKGVLDG 432 Query: 395 PALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDE 454 LPGKLADC +D +ELF+VEGDSAGGSAKQ RDR++QAI+PLKGKILN D+ Sbjct: 433 MGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDK 492 Query: 455 VLASQEVHDISVAI--GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRA 512 +L+SQEV + A+ GI D +L +LRY +I I+ DAD DG HI TLL F + Sbjct: 493 MLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPE 552 Query: 513 LVKHGHVYVALPPLYRIDLGKEVYY 537 +++ GHVY+A PPLY+I GKE Y Sbjct: 553 IIERGHVYIAQPPLYKIKHGKEERY 577 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 561 QRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 QR+KGLGEMNP QL ETT+D RRL+++ I ED D + L+ E RRN+++ Sbjct: 775 QRYKGLGEMNPEQLWETTMDVTQRRLLRVQI--EDAIAADQIFTTLMGDD-VEPRRNFIE 831 Query: 621 EKGDMA 626 +A Sbjct: 832 SNALVA 837 >UniRef50_Q98RQ4 DNA gyrase subunit B n=13 Tax=cellular organisms RepID=Q98RQ4_GUITH Length = 684 Score = 363 bits (933), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 231/641 (36%), Positives = 372/641 (58%), Gaps = 30/641 (4%) Query: 10 IEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLE 66 I VL GLEPVRRRPG++ +T +HL E++DNSVDE++AG ++VDVI+++D+S+ Sbjct: 49 ITVLEGLEPVRRRPGVFIGSTGLKGFHHLVYEIVDNSVDESMAGFCEKVDVIINSDKSVT 108 Query: 67 VIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRV 126 + D+GRG+P D+HP A+E +L LHAGGKF Y+ SGGLHGVG+SVVN LS+ + Sbjct: 109 IRDNGRGIPTDLHPITNKTALETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVNGLSEYL 168 Query: 127 EVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN--TGTSVHFWPD-ETFFDSPRFSVSR 183 +N +R+ + + F G+K+ + + + K+N GT+++F PD + FF F Sbjct: 169 NINTQRNQRKIGMRFVRGKKISECNI--SSFKKNIINGTTINFKPDYQIFFSEFDFDSYV 226 Query: 184 LTHVLKAKAVLCPGVEITFKDEINNT--EQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGN 241 + L A L +++ +D + + + G+ +Y+ E L P I + Sbjct: 227 IGGRLNELAFLNSNLKLLLEDRRSKIIKSSLFLHDGGIMEYINEMTINKKRL-HNPIILS 285 Query: 242 FAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNIL 301 + ++ +W E + S+VN I T++GGTHV+G +QG+ + + + Sbjct: 286 KIFNNSQIEIGFVWSSEQYQENILSFVNNIRTVEGGTHVDGFKQGITKLVNLLSKKKIKS 345 Query: 302 PRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK-DAFILWLN 359 + +S E I + +++VK +P+F GQ K +L + V ++K + I ++ Sbjct: 346 KEKLNSISGEFIREGLTCLINVKTSEPEFEGQIKSKLGNPDIKFLVENLIKEEGEIHFIE 405 Query: 360 QNVQAAELLAEMAISS--AQRRMRAAKKVVRKK-LTSGPALPGKLADCTAQDLNRTELFL 416 N ++ E AIS+ A + AK++VRKK + G LPGKL+DC+ ++ +E+F+ Sbjct: 406 NNSNLLNIVLEKAISAMNAYEASKKAKELVRKKSILEGITLPGKLSDCSEKNPQFSEIFI 465 Query: 417 VEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGIDPDS 474 VEGDSAGGSAKQARDR +QAI+PL+GKI+N + ++ + E+ + ++ +G+ + Sbjct: 466 VEGDSAGGSAKQARDRRFQAILPLRGKIINIEKNDEKKIYNNTEIQSLISALGLGVRGND 525 Query: 475 DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID---- 530 +DLS LRY KI I+ DAD DG HI TLL F ++ + L+ G VY+A PPLY+I+ Sbjct: 526 EDLSNLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQKELIDKGFVYIACPPLYKIENKKN 585 Query: 531 --LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 L K Y +E E E +++ K N+QRFKGLGEM P QL +TT+ P R L + Sbjct: 586 KNLDKNTQYCYSEGELEYIIQSSHFNK---NIQRFKGLGEMMPEQLWKTTMSPEMRILKK 642 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + + D +R D + ++L+ K E R+ ++Q + + +I+ Sbjct: 643 IKLSDA--KRADKIFEVLMGSKVPE-RKKFIQIQASLIKID 680 >UniRef50_C5B4P3 DNA gyrase, subunit B n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4P3_METEA Length = 816 Score = 363 bits (932), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 231/559 (41%), Positives = 321/559 (57%), Gaps = 43/559 (7%) Query: 5 YNADAIEVLTGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+A +I+VL GLE VR+RPGMY D T +H+ EV+DN +DE LAGHA RV V L+ Sbjct: 10 YDASSIQVLEGLEAVRKRPGMYIGDTNDGTGFHHMVWEVVDNGIDECLAGHADRVTVTLN 69 Query: 61 ADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 AD S+ V+D+GRG+PVD HP+ G A E+I+ LHAGGKF +Y+ SGGLHGVG+SVV Sbjct: 70 ADGSVTVVDNGRGIPVDPHPKYPGKSAAEIIMTVLHAGGKFDQNSYKVSGGLHGVGVSVV 129 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDSPR 178 NALS +E+ + R G+ + +AFE+GE ++ VG R GTSV F P TF Sbjct: 130 NALSSLLELTIWRGGREHYMAFEHGEPAGPIRDVGDAKGRR-GTSVTFTPSLRTFTGVVE 188 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKD----EINNTEQRWCYQDGLNDYLA--EAVNGLPT 232 FS + + L+ A L GV I F D +++ E Y+ G+ +Y+ + G Sbjct: 189 FSAAVIERRLRELAFLNSGVRIVFHDRRVKDVDPVEM--YYEGGVGEYVGYIDRTAGRDR 246 Query: 233 LPEKPFI----------GNFAGDTEAVDWALLWLPEGGELLTES---YVNLIPTMQGGTH 279 + +P + GN ++ AL W + TES + N IP GGTH Sbjct: 247 VIARPIVVRTERSVEVEGNPGPIPVGIEVALQW----NDSTTESVLPFTNNIPQTDGGTH 302 Query: 280 VNGLRQGLLDAMREFCEY--RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 V G + L R F Y RN L LS +D+ + ++SVK+ DP+FA QTK +L Sbjct: 303 VQGFKTAL---TRSFMAYVDRNPLKTKTGLSGDDLREGLTAIVSVKLPDPKFASQTKAKL 359 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK--VVRKK--LTS 393 S + + V V +A WL++N A + + A+ +A R A + +VR+K L Sbjct: 360 VSNEVSGPVQSAVGEALATWLDENPADARKVIDKAVEAAAAREAAKRAREMVRRKTVLDD 419 Query: 394 GPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD 453 +LPGKLADC +D +++E+ +VEGDSAGGSAKQ RD E+QA++PL+GKILNT D Sbjct: 420 ITSLPGKLADCRERDPSKSEILIVEGDSAGGSAKQGRDSEFQAVLPLRGKILNTETARLD 479 Query: 454 EVLASQEVHDISVAI--GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 ++ + V + A+ GI S D ++RY +I I+ DAD DG HI TLL A F +H Sbjct: 480 RIMKNAAVGTLVKALGCGIGKGSHDPDKVRYHRIIIMTDADVDGAHIRTLLLAFFFRHMP 539 Query: 512 ALVKHGHVYVALPPLYRID 530 L+ G VY A PPLY I+ Sbjct: 540 ELINRGFVYKAEPPLYSIE 558 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%) Query: 559 NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 + R+KGLGEM QL ETTLDP R +VQ+ ++D + R A +D L+ K SE R++ Sbjct: 748 TIGRYKGLGEMTAQQLSETTLDPTARSIVQIRVEDAEAAR--AKVDQLMGSK-SEPRKHL 804 Query: 619 LQEKGDMAEIE 629 L+ +G + E++ Sbjct: 805 LETRGHLVEVD 815 >UniRef50_B3TAI0 Putative DNA gyrase B n=1 Tax=uncultured marine microorganism HF4000_APKG8D23 RepID=B3TAI0_9ZZZZ Length = 646 Score = 360 bits (925), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 219/586 (37%), Positives = 338/586 (57%), Gaps = 26/586 (4%) Query: 28 DTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAV 87 D + +H EV+DN+VDE LAG+ V+V L + S+ VID GRG+PV PEEGV A Sbjct: 8 DGSALHHCIWEVVDNAVDEHLAGYNSTVEVNLEKNGSVTVIDHGRGIPVGKIPEEGVSAA 67 Query: 88 ELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKV 147 E+I+ +LHAGGKF NK Y+ +GGLHGVG+S VNA+S+++ + + RDG+V+ F G++ Sbjct: 68 EVIMTKLHAGGKFDNKAYKVAGGLHGVGVSAVNAVSEKLSMTIHRDGKVWTQNFVRGKRK 127 Query: 148 QDLQVVGTCGKRNTGTSVHFWPD-ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD-- 204 L+ T +TGT+++F PD + F D F ++ L+ A L G++I +D Sbjct: 128 AVLK--ATGKTTSTGTTINFKPDMKIFSDVTDFDFEQINTRLRRTAFLNAGLQIWLRDFR 185 Query: 205 EINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI---GNFAGDTEA--VDWALLWLPEG 259 + E Y GL Y+ E++N I G+ GD V+ AL W Sbjct: 186 GQDTVEIEHKYDGGLRQYV-ESMNEKKKAIHDEVIHILGSKDGDKGEVLVEVALQWTDAY 244 Query: 260 GELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYV 319 E + + N+I GG H++GL+ L + + + R +L LS +D+ + + V Sbjct: 245 SESI-HCFTNIIHNTDGGAHLSGLKSSLTRTVNSYAQSRKLLKNVSSLSGDDVREGLSAV 303 Query: 320 LSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI--SSAQ 377 +S+K DP F QTK +L + + A V +V D + +N A + E + S A+ Sbjct: 304 ISIKHPDPSFNAQTKAKLVTSEVAGIVEQIVNDKLGDYFEENPAVARSIVEKVVLASKAR 363 Query: 378 RRMRAAKKVVRKK-LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQA 436 R A+ + R+K + G LPG+LADC ++D EL++VEG+SAGGSAK ARDR QA Sbjct: 364 EAARKARDLTRRKGVLEGGGLPGQLADCQSRDPAECELYIVEGESAGGSAKTARDRRTQA 423 Query: 437 IMPLKGKILNTWEVSSD--EVLASQEVHDISVAIGI-------DPDSDDLSQLRYGKICI 487 ++PL+GKILN + +V +++++ + A+G D + D +LRYGKI I Sbjct: 424 VLPLRGKILNVERQQRNLTKVFSNEQIQRMIRALGAGVGNEEEDEGAFDPEKLRYGKIII 483 Query: 488 LADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGV 547 + DAD DG HI TL+ + R + +G+VY+A PPL+ + GK + TE++++ V Sbjct: 484 MTDADIDGAHIRTLILTFMWRFMRRAIANGNVYIAAPPLFSVSRGKHTEWVHTEKDRDAV 543 Query: 548 LEQLKRK--KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 +++L+++ K NVQR+KGLGEMNP QL +TT+DP +R + Q+ + Sbjct: 544 VKRLQKEAPTAKINVQRYKGLGEMNPEQLWQTTMDPESRTMFQVKM 589 >UniRef50_A1TI33 DNA gyrase subunit B n=16 Tax=Burkholderiales RepID=A1TI33_ACIAC Length = 877 Score = 357 bits (916), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 222/582 (38%), Positives = 321/582 (55%), Gaps = 53/582 (9%) Query: 5 YNADAIEVLTGLEPVRRRPGMY----TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y AI++L GLE VR+RPGMY +D T +HL EV+DNS+DEALAGH + V +H Sbjct: 39 YGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVVTIH 98 Query: 61 ADQSLEVIDDGRGMP----VDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 +D S+ V+D+GRG+P +D E A E+ L LHAGGKF+ +Y+ SGGLHGVG+ Sbjct: 99 SDNSISVVDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGV 158 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFE------------NGEKVQDLQVVGTCGKRNTGTS 164 S VNALSK + + VRRDG+V+ + F NG +V ++V G KR GT Sbjct: 159 SCVNALSKMLRLTVRRDGKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGETDKR--GTE 216 Query: 165 VHFWPD-ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL 223 VHF PD E F ++ F L L+ + L GV I KDE E + G+ ++ Sbjct: 217 VHFLPDTEIFKENNDFHYEILAKRLRELSFLNNGVRIRLKDERTGKEDDFSGAGGVMGFV 276 Query: 224 -----------AEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIP 272 A + + P + + G G V+ A+ W +G + N IP Sbjct: 277 QFINASKKVLHPNAFHATGSRPAETY-GGIPGTEIGVEVAMQW-NDGFNESVLCFTNNIP 334 Query: 273 TMQGGTHVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAG 331 GGTH+ GLR + + ++ E + + V++S +D+ + VLSVK+ +P+F+ Sbjct: 335 QRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKFSS 394 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV---R 388 QTK++L S + A V +V A +L + A++L + +A+ R A K R Sbjct: 395 QTKDKLVSSEVRAPVEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMTRR 454 Query: 389 KKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW 448 K + G LPGKLADC +D +E+++VEGDSAGGSAKQ RDR++QAI+PL+GKILN Sbjct: 455 KGVLDGMGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVE 514 Query: 449 EVSSDEVLASQEVHDISVAIGI-------------DPDSDDLSQLRYGKICILADADSDG 495 + +++L S E+ + A+G D ++ +LRY +I I+ DAD DG Sbjct: 515 KARYEKLLTSNEILTLITALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDADVDG 574 Query: 496 LHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYY 537 HI TLL F + LV+ GH+Y+A PPLY++ GKE Y Sbjct: 575 AHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELY 616 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 3/60 (5%) Query: 561 QRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 QR+KGLGEMNP QL ETT+DP RRL+++ I ED D + ML+ + E RR++++ Sbjct: 810 QRYKGLGEMNPEQLWETTMDPEVRRLLRVQI--EDAIEADRVFTMLMGDE-VEPRRDFIE 866 >UniRef50_UPI0001C311B1 DNA gyrase, B subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311B1 Length = 808 Score = 355 bits (911), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 221/555 (39%), Positives = 314/555 (56%), Gaps = 13/555 (2%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILH 60 +Y+A I VL GLE VR+RPGMY +T +HL EV+DNSVDEALAGHA VDV +H Sbjct: 16 SYDAQDITVLEGLEAVRKRPGMYIGSTGIRGLHHLVYEVVDNSVDEALAGHASAVDVTIH 75 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN-YQFSGGLHGVGISVV 119 D S+ V+D+GRG+PV + +EG PAVE++L LHAGGKF + Y+ SGGLHGVG+SVV Sbjct: 76 PDNSITVVDNGRGIPVAMMEKEGKPAVEVVLTVLHAGGKFGDGGGYKVSGGLHGVGVSVV 135 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS+++ V + RDG ++ + G L+ + TGT++ F PD+ +S F Sbjct: 136 NALSEQLRVEIFRDGFAWSQDYVRGAPQGQLERGEATSE--TGTTITFLPDDEIMESLDF 193 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ-RWCYQDGLNDYLAEAVNGLPTLPEKPF 238 + L L+ A L G+ I+ DE + Y G+ D++A + K Sbjct: 194 DFTTLEERLRETAFLTRGLRISLTDERGERRHVEFQYDGGIQDFVAYLNENKDPVQRKIV 253 Query: 239 IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 + D AV+ A+ W E + S+ N I T +GG+H++G R L + ++ + Sbjct: 254 YFSSESDEGAVEVAMQWNSSYQESVF-SFANNINTHEGGSHLSGFRSALTRTINKYAREK 312 Query: 299 NILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 L R L+ ED+ + V+S K+ +PQF GQTK +L + F +V + Sbjct: 313 GFLKERDANLAGEDVREGLTAVISAKLAEPQFEGQTKTKLGNPGMQGFTESIVNKGLDEF 372 Query: 358 LNQNVQAAE--LLAEMAISSAQRRMRAAKKVVRKKLT-SGPALPGKLADCTAQDLNRTEL 414 L +N Q A +L + + A+ R A+ + R+K LPGKLADC+ +D +E+ Sbjct: 373 LEENPQDARSVILKAVQAAQARSAARKARDLTRRKSALENSRLPGKLADCSVKDPALSEI 432 Query: 415 FLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS 474 F+VEGDSAGGSAKQ RDR QAI+PL+GKILN D+VL + EV + AIG Sbjct: 433 FIVEGDSAGGSAKQGRDRSTQAILPLRGKILNVERARIDKVLGNNEVQALITAIGTGVRD 492 Query: 475 D-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 D DL + RY KI ++ DAD DG HI TL+ L + L+ G +Y+A PPLY++ GK Sbjct: 493 DFDLEKARYHKIILMTDADVDGAHIRTLVLTLLFREMMPLIDAGFIYIAKPPLYKLKQGK 552 Query: 534 EVYYALTEEEKEGVL 548 Y + E E +L Sbjct: 553 NERYIEKDSELEEML 567 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 8/106 (7%) Query: 521 VALPPLYRIDLGKEVYYALTEEE-KEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTL 579 V PP + I LG A++ +E + V++ R + RFKGLGEMN QLRETT+ Sbjct: 704 VGTPP-FDIRLGDHRETAVSFDELRSRVMDMAGRG---VEINRFKGLGEMNAEQLRETTM 759 Query: 580 DPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 DP TR L ++T+ ED + + ML+ + E RRN+++E + Sbjct: 760 DPATRTLARVTM--EDAAAAERVFSMLMGDQ-VEPRRNFIEENASL 802 >UniRef50_Q1RHT8 DNA gyrase subunit B n=702 Tax=Proteobacteria RepID=GYRB_RICBR Length = 808 Score = 346 bits (888), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 230/655 (35%), Positives = 346/655 (52%), Gaps = 49/655 (7%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 +Y AD+I+VL GLE VR+RPGMY D + +H+ EV+DN++DEALAG+ V V+L Sbjct: 12 SYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDEALAGYCDLVRVVL 71 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + + S+ V D+GRG+PV+IH EEG+ A E+I+ +LHAGGKF +Y+ SGGLHGVG+SVV Sbjct: 72 NKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVV 131 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNT---GTSVHFWPDETFFDS 176 NALS +E+ + R+ + I F NG L VV K N GT V F+P F + Sbjct: 132 NALSDWLELRIWRNNTEHLIRFNNGITEAPLAVV----KENVDKKGTEVTFFPSVETFTN 187 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKD----EINNTEQRWCYQDGLNDYLAEAVNGLPT 232 F S + H L+ A L GV+I D E+ E + Y G+ Y+ + ++ Sbjct: 188 IEFDFSIIEHRLRELAFLNSGVKILLTDNRFEEVKEVE--FYYTGGIEAYV-KYLDRAKH 244 Query: 233 LPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 + N A +TE +++ A+ W E + + N I GGTH++ + GL Sbjct: 245 AVHSCIVVN-ADNTESGISLELAMHWNDSYHENIL-CFTNNIRQRDGGTHLSAFKSGLTR 302 Query: 290 AMREFCEYRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + + E + + S ED + VLSVK+ DP+F+ QTK++L S + V Sbjct: 303 VITAYLENTGLNKKAKNAFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPIVEN 362 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV---RKKLTSGPALPGKLADCT 405 V + W ++ A+L+ + +A R A K RK + LPGKLADC Sbjct: 363 AVYTKVLEWFEEHPADAKLIINKIMEAANAREAARKARELTRRKSVLEVSNLPGKLADCH 422 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 A+D +ELF+VEGDSAGG+AKQ RD + QAI+PL+GKILN D++L S ++ + Sbjct: 423 AKDPAVSELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGTLI 482 Query: 466 VAIGIDPDSDDLS--QLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 A+G D+ + S +LRY K+ I+ DAD DG HI TLL F +H L+ G++Y+A Sbjct: 483 TALGTGVDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIAQ 542 Query: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583 PPLY++ G Y E+ + L + + + L N +L + N+ Sbjct: 543 PPLYKVKKGASELYLKNEQALQDYLVKSAISDATLTLDNKEQLTNENLEELMSKVIKFNS 602 Query: 584 ----------RRLVQL----------TIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 R + ++ D+E D R ++ L + ++S D+ +W Sbjct: 603 LLDHASKKFNRSITEILAINDLLNNKIFDNESDSRLKKALNALNSLEQSPDKTDW 657 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 4/67 (5%) Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 KKG +VQRFKGLGEMN QL +TTLDP R L+Q+ + + D+ + + L+ E Sbjct: 735 KKG-ISVQRFKGLGEMNSDQLWDTTLDPKKRTLMQVRVAEVDE--AEGIFSTLMG-DVVE 790 Query: 614 DRRNWLQ 620 RR ++Q Sbjct: 791 PRRQFIQ 797 >UniRef50_A0LUT9 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Actinobacteria (class) RepID=A0LUT9_ACIC1 Length = 703 Score = 346 bits (888), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 237/646 (36%), Positives = 352/646 (54%), Gaps = 58/646 (8%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 T Y A + VL GLE VR+RPGMY TD+ H E++DN+VDEALAG+ +DVI Sbjct: 25 TDAYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCVWELLDNAVDEALAGYGDAIDVI 84 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 ++AD S+EV D GRG+PVD+ P+ G+ VE++ +LHAGGKF Y SGGLHGVG SV Sbjct: 85 VYADGSVEVRDTGRGIPVDVEPKTGLTGVEVVFTKLHAGGKFGGGAYGTSGGLHGVGASV 144 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK-VQD-------------LQVVGTCGKRNTGTS 164 VNAL+ R++V V RDG + ++F G + + D L ++ TGT Sbjct: 145 VNALAARLDVEVDRDGATWTMSFRRGRRGIFDGPGPKAPFRPGGGLAKARRLPRKVTGTR 204 Query: 165 VHFWPD-ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG---LN 220 V FWPD + F R + L + A L PG+ IT +DE + + + G Sbjct: 205 VRFWPDPQIFLRDARIDLDALIARARQTAFLVPGLAITIRDETTAYAETFRFSGGTKDFA 264 Query: 221 DYLA------EAVNG-------------LPTLPEKPF-IGNFAGDTEAVDWALLWLPEGG 260 DYLA +V+G +P L ++ + VD AL W G Sbjct: 265 DYLAAEAGAQTSVSGTLQLRGTGQFTETVPVLDDRGHSVPQDVIREMVVDVALRW-DSGY 323 Query: 261 ELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVL 320 + + S+VN++ T +GG+HV G + ++ + + ++ + + +D+ + V+ Sbjct: 324 DTVIRSFVNVVATPKGGSHVTGFERAVVKVVSDAARSARLV-KDEPIVKDDVLEGLTAVV 382 Query: 321 SVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ----NVQAAELLAEMAISSA 376 SV+ +PQF GQTKE L + V VV + + + QA+ + E +++A Sbjct: 383 SVRFPEPQFDGQTKEVLGTPAATRIVFDVVSRGLRAFFSSTRRVDRQASRAVLEKVVAAA 442 Query: 377 QRRM-----RAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD 431 + R + A++ RK ALP KLADC + D +RTELF+VEGDSA G+AK AR+ Sbjct: 443 RTRRALRAHKEAQR--RKNALESAALPAKLADCRSTDASRTELFIVEGDSALGTAKLARN 500 Query: 432 REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDLSQLRYGKICILAD 490 E+QA++P++GKILN + ++L + E I IG S L +RYGK+ I+ D Sbjct: 501 SEFQALLPIRGKILNVQKADLSDMLNNAECAAIIQVIGAGSGRSFSLDAVRYGKVIIMTD 560 Query: 491 ADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG--KEVYYALTEEEKEGVL 548 AD DG HI LL LF ++ R L+ G ++ A+PPL+RI++ K+ Y ++ E +L Sbjct: 561 ADVDGAHIRCLLLTLFFRYMRPLLDAGRIFAAVPPLHRIEVSGRKDPVYTYSDAELHRLL 620 Query: 549 EQLKRKKGKPNV-QRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 L R+ + QR+KGLGEM+ QL ETT+DP R L ++T+ D Sbjct: 621 ADLDRQGIRYKTPQRYKGLGEMDAAQLAETTMDPAHRVLRRMTLTD 666 >UniRef50_UPI00016C54E0 DNA gyrase subunit B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54E0 Length = 810 Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 200/548 (36%), Positives = 304/548 (55%), Gaps = 13/548 (2%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y D ++ L +R RPGMY TD +HL EV+ NSVDEALAG K + + +H+ Sbjct: 11 YTEDNLQTLKDAAHIRHRPGMYIGNTDIEGMHHLVWEVVYNSVDEALAGFCKNIFITVHS 70 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D+S+ V DDGRG+PV + + G +E L + GKF+N Y+ S GLHG+G +NA Sbjct: 71 DESITVSDDGRGIPVGVKADTGKSTLEEALTIAGSSGKFNNDAYKTSAGLHGMGAKAMNA 130 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS+ ++RDG+VY + FE G L+ +G K TGT++ F PD F F Sbjct: 131 LSEWCTAEIKRDGRVYKMEFEKGYATSKLEDLGPAPKGQTGTTITFKPDPEKFGDILFDY 190 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGN 241 RL + + L G+++ DE + + G+ +Y+ E +N N Sbjct: 191 DRLGTRFQQISFLNKGLKLALADERVGKSDTFHSERGIAEYV-EVLNRSEQTNYPLIYIN 249 Query: 242 FAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNIL 301 D V+ + +G L + N GGTH++G R GL A+ + + N+ Sbjct: 250 KQIDGVTVEVCFQY-TQGETKLEMCFTNNAYNKDGGTHLSGFRGGLTRAIGHYGKKANLF 308 Query: 302 PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 + ++L +D + V+++ P+F QTK +L+S + S VV + +L +N Sbjct: 309 -KEIELRGDDFREGLTAVINISHPQPKFESQTKVKLTSPEVEGQTSSVVYEVLSDYLERN 367 Query: 362 VQAAELLAEMAISSAQRRMRAAKKVV-----RKKLTSGPALPGKLADCTAQDLNRTELFL 416 + AE + + + +A+ R+ AAKK RK + LPGKL DC+++D TELFL Sbjct: 368 PKEAERICKKVLLTAEARI-AAKKARDAVKGRKDALNSGGLPGKLYDCSSRDRENTELFL 426 Query: 417 VEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-D 475 VEGDSAGGSA+ RDRE+QAI+PL+GK+LN + +++L + E+ + A+G+D D+ + Sbjct: 427 VEGDSAGGSAESGRDREFQAILPLRGKVLNVEKAKFEKLLENNEISALISAVGVDIDNVE 486 Query: 476 DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEV 535 D+S++RYGKI I+ DAD DG HI TLL F + R L++ GHV+VA PPLY++ KE Sbjct: 487 DVSKVRYGKIIIMTDADVDGQHIRTLLLTFFFRQMRKLIEAGHVFVARPPLYKVTQKKET 546 Query: 536 YYALTEEE 543 + + EE Sbjct: 547 RFIQSREE 554 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 14/107 (13%) Query: 523 LPPLYRIDLGKE--VYYALTEEEKEGVLEQLK------RKKGKPN--VQRFKGLGEMNPM 572 L PL RI G+E V Y L + L L+ R+ G+ V RFKGLGEM+P Sbjct: 693 LVPLQRI-AGREPPVRYTLDHDGSNKSLVSLRELVIEIRRLGEKGIAVTRFKGLGEMDPE 751 Query: 573 QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 +L TTLDP R L+++T++D + + M L+ K+ +DR+ ++ Sbjct: 752 ELWATTLDPQYRTLLKVTLNDA--FKAEEMFRTLMGKE-VQDRKAFI 795 >UniRef50_A1SCM1 DNA gyrase subunit B n=28 Tax=Actinomycetales RepID=A1SCM1_NOCSJ Length = 711 Score = 324 bits (831), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 249/674 (36%), Positives = 368/674 (54%), Gaps = 63/674 (9%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y+A AI+VL GLE VR+RPGMY +T +HL E++DN+VDEALAG+ R+ + L A Sbjct: 32 YDASAIQVLEGLEAVRKRPGMYIGSTGERGLHHLIWEIVDNAVDEALAGYCDRIVLTLLA 91 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D + V D+GRG+P P + +PA+ L L LHAGGKF Y+ SGGLHGVG+SVVNA Sbjct: 92 DGGIRVEDNGRGIPTGTAPGQELPALTLALTVLHAGGKFGGGGYKVSGGLHGVGVSVVNA 151 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDL-QVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 LS R+ V+ G ++ +F G +L QV TGT++ +W F++ S Sbjct: 152 LSTRLVAEVKNRGHLWRQSFSAGVPDGELEQVRPVEPDEGTGTTITYWASPDIFETTTHS 211 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDE-----------------------INNT-------- 209 + +T ++ A L G+EI +DE I++ Sbjct: 212 LETITSRIREYAFLNKGLEIVVRDERPAAAEIVDAVEDDTVDPDHRGGIDDAGHDAIKRG 271 Query: 210 -----EQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVD------WALLWLPE 258 EQ + Y GL DY+ E +N T I A E+V+ A+ W Sbjct: 272 EGGALEQIFKYDRGLIDYV-EHLNRRKTAANPTVIAFEAETPESVENHMSLEVAMQWNTS 330 Query: 259 GGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV-KLSAEDIWDRCA 317 E + ++ N I T +GGTH G R L + + ++ + ++S +DI + Sbjct: 331 FSESV-HTFANTINTHEGGTHEEGFRAALTSLVNNWGFEWGLMKKPEDRVSGDDIREGLT 389 Query: 318 YVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQ 377 ++S+K+ +PQF GQTK +L + + FV +V D WL QN + A ++A Sbjct: 390 AIISIKLGEPQFEGQTKTKLGNTEAKGFVQRLVNDQLGAWLEQNPAEGRDIVRKAQAAAS 449 Query: 378 RRMRAAKKV----VRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDRE 433 R+ A K RK L G LPGKL+DC + + E+F+VEGDSAGGSA+Q RD Sbjct: 450 ARIAARKARDLARSRKGLLGGGGLPGKLSDCQSTNPAECEVFIVEGDSAGGSARQGRDPR 509 Query: 434 YQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID-PDSDDLSQLRYGKICILADAD 492 QAI+P++GKILN + D+VL++QEV I A+G D D+ +LRY K+ ++ADAD Sbjct: 510 IQAILPIRGKILNVEKARIDKVLSNQEVQSIISALGTGIQDEFDIEKLRYHKVVLMADAD 569 Query: 493 SDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK--EVYYALTEEEKEGVL-- 548 DG HI TLL L + + L++ G+VY+A PPLYR+ K E + ++ E++ +L Sbjct: 570 VDGHHINTLLLTLLFRFMKPLIEGGYVYMAQPPLYRLRWNKPHEHEFVYSDAERDALLRA 629 Query: 549 -EQLKRKKGKPN-VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDML 606 ++ +K K N VQR+KGLGEMN +L ETT+DP R ++Q+T+DD D + +L Sbjct: 630 GQEAGKKLPKENPVQRYKGLGEMNAKELWETTMDPEQRLMLQVTLDDA--AHADEIFSIL 687 Query: 607 LAKKRSEDRRNWLQ 620 + + E RR+++Q Sbjct: 688 MGED-VEQRRSFIQ 700 >UniRef50_D1C5K6 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5K6_SPHTD Length = 674 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 223/643 (34%), Positives = 336/643 (52%), Gaps = 36/643 (5%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y+ I VL G+E +R RPGMY T TT +HL E +DN+ DEA+AG+ K + V + Sbjct: 34 YSGADIRVLEGIEAIRTRPGMYIGSTGTTGLHHLIWEALDNATDEAIAGYGKNIWVEIDR 93 Query: 62 DQSLEVIDDGRGMPVDIHPEEG--VPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D + V D+ RG+P D G +P +I+ H+GGKF Y+ +GGLHGVG +V+ Sbjct: 94 DGWVTVRDEARGIPFDPKEINGKTLPTATVIMTVPHSGGKFEQGAYKTAGGLHGVGATVI 153 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS+R+E+ + RDGQ + F G V + C + TGT + + D F P Sbjct: 154 NALSERLELTIWRDGQQFFQTFTRG--VPGKHTITPCDPKRTGTQLRWLFDREIFADPAV 211 Query: 180 SVSR--LTHVLKAKAVLCPGVEITFK----DEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 R + L+A A L G+ + D EQ + + GL DY+ E P Sbjct: 212 GYQRDVVESRLRAAAYLNRGIAYHLRIWDDDAGEMVEQTFHSERGLVDYVEEL---RPRD 268 Query: 234 PE-KPFIGNFAGDTEAVDWALLWL---PEGGELL-TESYVNLIPTMQGGTHVNGLRQGLL 288 E +P E D ++ + P GE S+ N + T++GGTH +G + L Sbjct: 269 KESQPLFKEVVAIAETRDDVVIEVAVQPNRGERTRVVSFANGVRTIEGGTHESGFQAALT 328 Query: 289 DAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + + R + + + A+ I + ++SVK+ +PQF GQTK RL++ V Sbjct: 329 KVLNDQA-IRLGVTKKREFDADLIREGLVAIVSVKLTNPQFEGQTKNRLTNSGVDGIVRS 387 Query: 349 VVKDAFILWLNQNVQAAE----LLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLAD- 403 VV DA W+ N AA L + + + A + K +G L ++D Sbjct: 388 VVGDALTRWMEANESAAREWVRTLEQRRKARDAAKAAARLVMTGKSRRNGALLDAAISDK 447 Query: 404 ---CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE 460 C +D R EL+LVEGDSAGGSA Q R ++QAI+ L GK LN + + V ++E Sbjct: 448 FIPCNTKDPERAELYLVEGDSAGGSASQGRFSDFQAILKLSGKPLNVARANIERVAKNEE 507 Query: 461 VHDISVAIGIDP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHV 519 + + IG + D+S+LR+ KI I+ DAD DG+HI LL LF++ L++ GH+ Sbjct: 508 IRTLLQVIGTGSRQAFDISRLRFHKIIIMTDADVDGMHIQALLLTLFLQELPQLIERGHI 567 Query: 520 YVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTL 579 Y+A PPLY + +V + + E + E +K +KG ++R+KGLGEMNP +LRETT+ Sbjct: 568 YLAAPPLYSVRQNGKVTWL---RDDEALREWMKGRKGPFELKRYKGLGEMNPRELRETTM 624 Query: 580 DPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 DP RRL ++T+ ED + M+ L+ +E RR +L ++ Sbjct: 625 DPERRRLRRVTL--EDAALAERMVYELMEDTNAEGRRTFLAQR 665 >UniRef50_O33367 DNA gyrase subunit B n=6 Tax=Bacteria RepID=GYRB_MYXXA Length = 815 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 200/511 (39%), Positives = 293/511 (57%), Gaps = 20/511 (3%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVILHA 61 Y D+I L G E VR+RPGMY T L + EV+DN+VDE+LAGH ++V++H Sbjct: 18 YGTDSITKLEGREAVRKRPGMYIGDTMAYGLHKLVYEVVDNAVDESLAGHCTDIEVVIHV 77 Query: 62 DQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 D SL V D+GRG+PV HP+ G +E++L LHAG KF N Y+ SGGLHGVG++ VN Sbjct: 78 DGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTCVN 137 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 LS+ +V V R+G VY A+ G + VGT KR GT + F PD T + F+ Sbjct: 138 FLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVGTTDKR--GTHIAFKPDATVMELVEFN 195 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240 L+ L+ A L G+ I +DE N E + + G++ ++ TL +KP Sbjct: 196 FETLSQRLRELAFLNAGLHIVVRDERTNKEHDFKFDGGISSFVEYLNKSKQTLHDKPI-- 253 Query: 241 NFAGDTEAV--DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 +F+ + E V D A+ W +G + ++ N I T +GG+H++G + L + + E + Sbjct: 254 SFSTEREGVMLDIAMQW-NDGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAE-K 311 Query: 299 NILPRGVK--LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 L + +K + ED + + V+SVK+ +PQF GQTK +L + + V +V D Sbjct: 312 GSLWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGS 371 Query: 357 WLNQN-VQAAELLAEMA--ISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTE 413 +L + + A +++A++ + +A + V RK + G LPGKLADC +D N +E Sbjct: 372 FLEETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQIRDPNESE 431 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GID 471 L++VEGDSAGGSAKQ RDR QAI+PL+GKILN E E+L S E+ + A+ GI Sbjct: 432 LYIVEGDSAGGSAKQGRDRRNQAILPLRGKILNV-EKLLREMLTSAEIVTLITALGNGIG 490 Query: 472 PDSDDLSQLRYGKICILADADSDGLHIATLL 502 + D + RY +I ++ DAD DG HI TLL Sbjct: 491 AEDYDPEKARYHRIFLMTDADVDGSHIRTLL 521 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD--EDDQRTDAMMDMLLAKKRSEDRRN 617 +QR+KGLGEMNP QL +TT++P TR L+Q+ ++D E D+ +M + +R RN Sbjct: 747 LQRYKGLGEMNPEQLWDTTMNPATRTLLQVRVEDAVESDEIFSLLMGEAVEPRREFIERN 806 Query: 618 WL 619 L Sbjct: 807 AL 808 >UniRef50_Q7RHG3 DNA topoisomerase II, putative n=3 Tax=Plasmodium (Vinckeia) RepID=Q7RHG3_PLAYO Length = 930 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 200/646 (30%), Positives = 308/646 (47%), Gaps = 117/646 (18%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVIL 59 Y+A I +L GLE VR+RPGMY T L Q E++DN+VDE ++ VI+ Sbjct: 111 NNYDAKDIVILEGLEAVRKRPGMYIGNTDSKGLHQILFEIVDNAVDEYNNHECNQIKVII 170 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF------------------- 100 H D+S+ + D+GRG+P DIH + A+E +L LH+G KF Sbjct: 171 HNDESITIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFLDDDINMIVNEEKGKQKKT 230 Query: 101 ----------------------------------SNKNYQ---FSGGLHGVGISVVNALS 123 +N+N Q +S GLHGVG+SV NALS Sbjct: 231 KKEVQETGNSNISNNSKGNDTSVDGTKENKDKNKTNENLQKYKYSSGLHGVGLSVSNALS 290 Query: 124 KRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP-RFSVS 182 ++VNV RD ++YNI E G+ V++L V C + GT +H+ PD T F + + + Sbjct: 291 TFMKVNVFRDNKIYNIELEKGKVVKELN-VQDCPIKKRGTQIHYKPDNTIFKTNIKHNSE 349 Query: 183 RLTHVLKAKAVLCPGVEITFKDEIN-----------NTEQRWC------------YQDGL 219 + + L A L + F DE N N E ++ GL Sbjct: 350 FIKNRLHQLAYLNDKLTFYFYDERNSNKGNSDKVSENVENNSYTKLDNYEYEIIKHEGGL 409 Query: 220 NDYLAE----AVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQ 275 ++Y+ + N T + I F + VD L W+ S+VN + T+ Sbjct: 410 DEYMEKLTKNKTNIFKTNNKVISISCFQKNIH-VDLKLKWVTNQYNENILSFVNNVNTID 468 Query: 276 GGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 GGTHV+ ++ + ++ + + V + E I + +LS+KM +P+F GQTK Sbjct: 469 GGTHVDAMKYAISRSINYNVKKNETIKNFVNIPGEYIREGLTAILSIKMNNPEFEGQTKT 528 Query: 336 RLSSRQCAAFVSGVV--KDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTS 393 +L S + ++ K + I N+ L + + +AA+ ++R K Sbjct: 529 KLGSYYLKPILESIIFEKLSEIFDFEPNLLNTIYLKALQAKKSDEEAKAARDLIRSKNNQ 588 Query: 394 --GPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVS 451 LPGKL DC + D+++ E+F+VEGDSA GSAKQAR+RE QAI+PLKGKILN ++ Sbjct: 589 YYSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIK 648 Query: 452 SD-EVLASQEVHDISVAIGIDPDSDDL-----------------------SQLRYGKICI 487 ++ ++ + E+ + AIG++ + D+ + LRYGKI I Sbjct: 649 NNKKIFENIELKSLITAIGLNVNYDNSKTGKSNTNKRNDNKDIKKNNFIDTSLRYGKIII 708 Query: 488 LADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 + DAD DG HI LL + + ++++G+VYVA PPLY++ K Sbjct: 709 MTDADVDGEHICILLLTFLYRFQKEIIENGNVYVACPPLYKVTYNK 754 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 27/37 (72%) Query: 557 KPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 K +QRFKGLGEM QL TT+DP R+L+++T+ D Sbjct: 864 KYEIQRFKGLGEMMADQLWSTTMDPQVRKLIRVTVSD 900 >UniRef50_A7I8U0 DNA gyrase subunit B n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I8U0_METB6 Length = 708 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 171/475 (36%), Positives = 260/475 (54%), Gaps = 12/475 (2%) Query: 152 VVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ 211 ++ T G + TGT +HF PD + F++ F L H L+ A L G+ I DE Sbjct: 227 LLATLGNKLTGTRIHFVPDASIFETTTFDYDVLAHRLRELAFLNAGLTIIITDERTGDSA 286 Query: 212 RWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWAL-LWLPEGGELLTESYVNL 270 +CY GL++++ G L P +D + + G + +YVN Sbjct: 287 TYCYAGGLSEFVKYLNEGNEVLHPNPIYITKKDAENKLDLEVAMQYTTGYDEKLYTYVNS 346 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRG--VKLSAEDIWDRCAYVLSVKMQDPQ 328 + T +GGTH+ G R + + + I+ V L ED+ + V+SVKM +PQ Sbjct: 347 VNTREGGTHLEGFRSAITRGINVVAKRNGIIKENAQVTLRGEDVREGLTSVVSVKMANPQ 406 Query: 329 FAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRR--MRAAKKV 386 F GQTK RL + V +V A + ++N +++ E A+S+A+ R R A+ + Sbjct: 407 FEGQTKMRLGNSSVKGIVDSLVYAALTEYFDENPGVLKIIVEKALSAAKAREAARNARDL 466 Query: 387 VRKKLT-SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKIL 445 R+K + LPGKL+DC+ +D ++E+++VEGDSAGGSAKQ RDR++QAI+PL+GKIL Sbjct: 467 ARRKSSLESAGLPGKLSDCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKIL 526 Query: 446 NTWEVSSDEVLASQEVHDISVAIGID-PDSDDLSQLRYGKICILADADSDGLHIATLLCA 504 N + ++L + E+ + AIG + D + RY +I I+ DAD DG HI TLL Sbjct: 527 NVEKAGEHQILKNAEIQTLINAIGTGIGEKFDPERARYHRIVIMTDADVDGAHIRTLLLT 586 Query: 505 LFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFK 564 F ++ R L++ G+VY+A PPL+RI GKE Y E E + V + K ++QR+K Sbjct: 587 FFYRYMRKLIELGYVYIAQPPLFRIAKGKEEKYVYKEAEMQKVSAAMGDK--GVSIQRYK 644 Query: 565 GLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 GLGEMN QL +TT+DP R ++++I ED D M L+ K E R+N++ Sbjct: 645 GLGEMNAQQLWDTTMDPENRIFLKVSI--EDAYEADEMFKTLMGKD-VEIRKNFI 696 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 80/148 (54%), Positives = 101/148 (68%), Gaps = 3/148 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDV 57 MT TY+A I VL GL+PVR RP MY TDT +HL EV+DNS+DEALAG R+ V Sbjct: 1 MTDTYDASHITVLEGLQPVRERPAMYIGSTDTRGLHHLVYEVVDNSIDEALAGFCNRICV 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 +++ D SL V D+GRG+PVD + A+E++L LHAGGKF + YQ SGGLHGVG+S Sbjct: 61 VINKDGSLMVEDNGRGIPVDTMEKNHKSALEVVLTVLHAGGKFDKETYQVSGGLHGVGVS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGE 145 VVNALS + V RDG +Y + F G+ Sbjct: 121 VVNALSNWLSARVYRDGNIYEMRFSQGK 148 >UniRef50_A8S818 Putative uncharacterized protein n=6 Tax=Bacteria RepID=A8S818_9FIRM Length = 699 Score = 294 bits (752), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 206/647 (31%), Positives = 328/647 (50%), Gaps = 53/647 (8%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y ++I L G + VR+RP + + H E++ NS+DEA GH ++V Sbjct: 41 QEYGNESITSLKGADRVRKRPAVIFGSDGVEGCAHSIFEIVSNSIDEARDGHGDTINVTR 100 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN--KNYQFSGGLHGVGIS 117 D S+ V D GRGMPVD + EG EL+ C ++AGGK+ NY+FS GL+G+G+ Sbjct: 101 CKDGSVIVEDFGRGMPVDWNNGEGRFNWELLFCEMYAGGKYGEGEDNYEFSLGLNGLGLC 160 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 S + ++ RDG Y++ F+ GE V LQ G+R TG+ +H+ PD+ F Sbjct: 161 ATQYASAWMTADIYRDGYHYHLDFKKGENVGGLQKEPYKGRR-TGSIIHWKPDDEVFTDI 219 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNT-------EQRWCYQDGLNDYLAEAVNGL 230 S VL+ +AV+ G+ + F DE + WCYQ+G+ DY+AE V G Sbjct: 220 DVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWHESWCYQNGIADYVAE-VAGE 278 Query: 231 PTLPEKPFIGNFAGDTEAV--------DW-----ALLWLPEGGELLTESYVNLIPTMQGG 277 TL P F+ ++EAV D+ A +LL E Y N GG Sbjct: 279 DTLT--PV---FSCESEAVGRDREDQPDYKVRMSAAFCFSNKVQLL-EYYHNSSWLEHGG 332 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 + + +R + + ++ + +N+ +G +S +D+ D YV S + QTK+ Sbjct: 333 SPEHAVRTAFVYQINKYLKEKNLYKKGESTISFQDVQDCLVYVSSSFSTRTSYENQTKKA 392 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAK--KVVRKKLTSG 394 ++++ + ++ +K ++ + + A+ + + + + Q R A K + ++K L++ Sbjct: 393 ITNKFVSQAMTDFLKHYLEVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQ 452 Query: 395 PALPG---KLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVS 451 L K DC +D R EL++VEGDSA G+ K +RD EYQAIMP++GKILN + Sbjct: 453 IDLANRVQKFVDCRTRDSARRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLKAD 512 Query: 452 SDEVLASQEVHDISVAIGIDPD----------SDDLSQLRYGKICILADADSDGLHIATL 501 + S + D+ +G + + +L LR+ KI I DAD DG I TL Sbjct: 513 YARIFKSDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQIRTL 572 Query: 502 LCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQ 561 + + + L+ G+VY+A PLY I Y+A TE EK L+++ K K +Q Sbjct: 573 VLTMLYRLTPTLINKGYVYIAESPLYEITTKDRTYFAYTESEKAAFLQKIGDK--KYTIQ 630 Query: 562 RFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA 608 R KGLGE +P + TT++P +RRL+++ D +T + D+LL Sbjct: 631 RSKGLGENDPEMMWLTTMNPESRRLIKVM--PTDVVQTAQVFDILLG 675 >UniRef50_Q9FAX1 DNA gyrase subunit B (Fragment) n=60 Tax=Bacteria RepID=GYRB_FLEEL Length = 478 Score = 290 bits (743), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 172/479 (35%), Positives = 275/479 (57%), Gaps = 23/479 (4%) Query: 104 NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGT 163 Y+ SGGLHGVG+S VNALS + V R+G+V+ + G ++VVG + TGT Sbjct: 4 TYKVSGGLHGVGVSCVNALSSLLVATVHREGKVFQQKYSTGNPQGAVEVVGQSDR--TGT 61 Query: 164 SVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ-RWCYQDGLNDY 222 +++F PD T F + + ++ L+ + L G+ +T D EQ R Y++ ++ Sbjct: 62 TIYFEPDATIFATTEYKYETVSKRLRELSYLNKGIRLTLTDLRETDEQGRHLYEEFFSEG 121 Query: 223 -LAEAVNGL-----PTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 L E V L P LP + GD V+ AL++ E + SYVN I T +G Sbjct: 122 GLKEFVEHLDSTRQPLLPAPIHVEKTDGDI-PVEVALIYNNSYSENVF-SYVNNINTHEG 179 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 GTHV+G R+ L ++ + + +L + V+++ +D + V+S+K+ +PQF GQTK Sbjct: 180 GTHVSGFRRALTRTLKSYADKSGMLEKAKVEITGDDFREGLTAVISIKVAEPQFEGQTKT 239 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI---SSAQRRMRAAKKVVRKKLT 392 +L + V V + +L +N + A+L+ + I + Q +A + V RK + Sbjct: 240 KLGNSDAIGAVDNAVSEILGYYLEENPREAKLIIQKVILAAQARQAARKAREMVQRKNVM 299 Query: 393 SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSS 452 G +LPGKLADC+ + R EL+LVEGDSAGGSAKQ RDR +QAI+PL+GKILN + Sbjct: 300 GGTSLPGKLADCSDTNPERCELYLVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKAQE 359 Query: 453 DEVLASQEVHDISVAIGI------DPDSDDLSQLRYGKICILADADSDGLHIATLLCALF 506 ++ ++E+ ++ A+G+ D + +L++LRY KI I+ DAD DG HI TL+ F Sbjct: 360 YKIYDNEEIKNMITAMGVTFGTEEDSKALNLTKLRYHKIIIMTDADVDGSHIRTLILTFF 419 Query: 507 VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQL--KRKKGKPNVQRF 563 ++ R L++ G++YVALPPLY + GKE YA ++ E++ ++ ++ + K+ +QR+ Sbjct: 420 FRYMRELIEQGYLYVALPPLYIVKKGKEERYAWSDAERDAIIREIAPEGKEDSVGIQRY 478 >UniRef50_Q18GY2 DNA gyrase subunit B n=10 Tax=cellular organisms RepID=Q18GY2_HALWD Length = 852 Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 166/434 (38%), Positives = 251/434 (57%), Gaps = 21/434 (4%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y A I+VL GLE VR+RP MY TD+ +HL EV+DN++DEALAGH ++DV LH Sbjct: 7 YGAGDIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNAIDEALAGHCDQIDVTLHE 66 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S+ V D+GRG+PVD H + +PAVE+I+ LHAGGKF NK+YQ SGGLHGVG+SVVNA Sbjct: 67 DGSVSVADNGRGIPVDTHEQHDIPAVEVIMTVLHAGGKFDNKSYQVSGGLHGVGVSVVNA 126 Query: 122 LSKRVEVNVRRDGQVYNIAFENG-------EKVQDLQVVGTCGKRNTGTSVHFWPDETFF 174 LS+ +EV ++RDG ++ FE G E+V+DL TGT++ FWP + F Sbjct: 127 LSRWLEVEIKRDGALWRDRFEYGEPQPGAFERVRDLD-----PDEETGTTIRFWPSDDIF 181 Query: 175 DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLP 234 ++ F S L + L+ A L GVEI E ++ ++C+ G+ +++ + ++ T+ Sbjct: 182 ETTEFEFSTLENRLRELAFLNSGVEICINGETDDINSKFCFNGGIREFV-KYLDETKTVL 240 Query: 235 EKPFIGNFAGDTEAVDWAL-LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 + ++ + + ++ + L E + ++ N I T +GGTH+ G + L + + Sbjct: 241 HDSVV-HYQNEQDGIEVEVALQATEELQGSIHAFANNINTREGGTHLTGFKTALTRVIND 299 Query: 294 FCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 + N+L L ED+ + V+S+K DPQF GQTK +L + V + Sbjct: 300 YGREHNLLDGFDSLQGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDVRGIVESTTHER 359 Query: 354 FILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLN 410 +L +N A+++ A+ +A+ R A + RK +LPGKLADC ++D Sbjct: 360 LGTYLEENPDVAKVIVRKAVEAAKARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPA 419 Query: 411 RTELFLVEGDSAGG 424 +ELF+VEGDSAGG Sbjct: 420 ESELFIVEGDSAGG 433 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/214 (44%), Positives = 127/214 (59%), Gaps = 7/214 (3%) Query: 416 LVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID-PDS 474 L G SAKQ R+R +QAI+PLKGKILN + D +L + EV + AIG D Sbjct: 640 LASGVFVHNSAKQGRERRFQAILPLKGKILNVEKHRLDRILENDEVRALITAIGAGIGDE 699 Query: 475 DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKE 534 ++ RY ++ IL+DAD DG HI TLL L +H R LV+ G+VY A PPLYRI Sbjct: 700 FNVEDARYNRLIILSDADVDGAHIRTLLLTLLYRHMRPLVEAGYVYAAKPPLYRIRYNGN 759 Query: 535 VYYALTEEEKEGVLEQLKRKKGKPN-VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 Y A+T+ E++ V+ + G P VQRFKGLGEMNP QL ETT++P R L Q+TI Sbjct: 760 TYDAMTKSERDQVISDV--CNGNPTQVQRFKGLGEMNPEQLWETTMNPENRVLKQITI-- 815 Query: 594 EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 ED D M +L+ E R+ +++++ AE Sbjct: 816 EDAAAADKMFSVLMGDA-VEPRKEFIKDRATDAE 848 >UniRef50_A3DC64 DNA topoisomerase (ATP-hydrolyzing) n=11 Tax=Bacteria RepID=A3DC64_CLOTH Length = 661 Score = 284 bits (726), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 191/650 (29%), Positives = 333/650 (51%), Gaps = 37/650 (5%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y +I+ L G E VR RP + + H E++ NS+DEA G K ++V Sbjct: 10 ERYGNTSIKSLKGAERVRLRPAVIFGSDGIEGCQHSFFEILSNSIDEAREGFGKVIEVTR 69 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN---KNYQFSGGLHGVGI 116 D+S+ V D GRG+P+D + E EL+ C L+AGGK+ N +NY+FS GL+G+G Sbjct: 70 FKDRSIMVKDYGRGIPLDYNENEKRYNWELVFCELYAGGKYKNNSGENYEFSLGLNGLGS 129 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 S+ ++V V RDG Y++ FE GE V L+ +TGT + + PD F Sbjct: 130 CATQYSSEYMDVTVFRDGMRYDLHFEKGENVGGLKK-QKWDYESTGTIIKWRPDLEVFTD 188 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 + T VL+ +AV+ G++ DE ++ +CY++G+ DY+ E V+G + Sbjct: 189 INIPLEYYTEVLRKQAVVNAGLKFILYDEESDRVFEYCYENGIVDYIKE-VSGDKAFTDI 247 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQ-------GGTHVNGLRQGLLD 289 + + D L + VNL+ GG ++ + Sbjct: 248 QYYETSTRGRDREDKPEYKLKMQIAFCFNNEVNLLEYYHNSSFLEYGGAPDKAVKNAFVY 307 Query: 290 AMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + +F + + + +++ +DI D V + + QTK+ ++++ ++ Sbjct: 308 VIDKFLKSQGKYNKDESRITFQDIQDSLILVSNSFSTITSYENQTKKSITNKFIQEAMTE 367 Query: 349 VVKDAFILWLNQN-VQAAELLAEMAISSAQRRMRAAKKV-VRKKLTSGPALPG---KLAD 403 +K+ ++ +N V+ ++L ++ ++ R +V ++KKL+ + K D Sbjct: 368 FLKEKLEVYFIENKVECTKILEQVLVNKRSRETAEKTRVNIKKKLSGNVDISNRVKKFVD 427 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C ++D+N+ E+++VEGDSA GS K ARD E+QAI+P++GKILN + D + ++ + D Sbjct: 428 CRSKDVNKREIYIVEGDSALGSCKLARDAEFQAIIPVRGKILNCLKADYDSIFKNEIIVD 487 Query: 464 ISVAIGI----------DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRAL 513 + +G + + DL+ LR+ KI I DAD DG I TL+ A+ + L Sbjct: 488 LLKVLGCGVEIKSKHNRELSTFDLNNLRWSKIIICTDADVDGYQIRTLILAMLYRLVPTL 547 Query: 514 VKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573 ++ G V++A PL+ I + Y+A T++EK ++ +L KGK + R KGLGE +P Sbjct: 548 IQVGKVFIAESPLFEIRTKDKTYFAYTDKEKNEIVSKL---KGKYTILRSKGLGENDPDM 604 Query: 574 LRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG 623 + +TT++P TRRL+Q+ D D ++T+ D+ L R+++++E G Sbjct: 605 MWQTTMNPETRRLIQVVPD--DIKKTEEFFDLFLGDNLP-GRKSYIEEHG 651 >UniRef50_A6TSS9 DNA gyrase, subunit B domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSS9_ALKMQ Length = 680 Score = 279 bits (713), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 204/672 (30%), Positives = 329/672 (48%), Gaps = 59/672 (8%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y ++I LT +E VR RP + + T H E + NSVDEA G K + V Sbjct: 7 QEYGNESISSLTEIEKVRLRPQVIFGSDGITGSRHTVDETVANSVDEAKEGFGKLIKVKR 66 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF---SNKNYQFSGGLHGVGI 116 D+S+ V D RG+PV+ + +E EL+ C L+AGGK+ S ++Y++S GL+G+G Sbjct: 67 FKDRSISVQDFARGIPVEFNSKENKYNWELVFCTLYAGGKYNTNSGESYEYSKGLNGLGT 126 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 + S+ ++V VRRDG Y + FE GE + LQ C +TGT++ + PD F Sbjct: 127 TATQFASEYMDVLVRRDGYEYTLRFEKGENIGGLQK-KKCDYESTGTTITWKPDLDVFTD 185 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 + +LK +A++ G+ DE + + Y+ G+ DY+ E +NG L Sbjct: 186 INIPLEFYQELLKRQAIVNKGITFELYDEASEENFTYYYEKGIVDYIEE-INGGKELSSV 244 Query: 237 PFI-----GNFAGDT--EAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 +I G D V + + E Y N GG ++ L Sbjct: 245 QYIELETKGRDRADKPEYKVKAEVAFAFNNHASHIEYYHNSSYLEYGGAPDKAVKSAFLS 304 Query: 290 AMREFCEYRNILPRGVKLSA-EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 A+ ++ + N+ + K + DI D + + F QTK +S+ + ++ Sbjct: 305 AIEQYLKNNNLYKKDEKRAIFADIEDSLVLISNSYSTLTSFENQTKRAISNVFIQSALTD 364 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKV--VRKKLTSGPALPGKLA---D 403 +K+ ++ +N A+ +A I + + R A K V+KKL S K+A D Sbjct: 365 FLKEKLQIYFIENKVEADKIANQIIINKRSRESAEKTRINVKKKLESPSNFANKVAKFVD 424 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C +D ++ EL++VEGDSA GS KQ RD E+QAIMP++GKILN + D + + D Sbjct: 425 CKTKDKSKRELYIVEGDSAMGSTKQGRDSEFQAIMPVRGKILNCLKAKLDNIFNDSVIVD 484 Query: 464 I--SVAIGIDPDSDD--------LSQLRYGKICILADADSDGLHIATLLCALFVKHFRAL 513 + ++ GI+ S + L +L + K+ I DAD DG I TL+ A+ + L Sbjct: 485 LLKVLSCGIEIKSKNNTDLYTFELDKLNWDKVIICTDADVDGYQIRTLILAMLYRLVPTL 544 Query: 514 VKHGHVYVALPPLYRI--------------------DLGKEVY--YALTEEEKEGVLEQL 551 ++ G VY+A PL+ I + G + Y + ++++++ V+ +L Sbjct: 545 LREGKVYIAETPLFEIISTTLPKLTDKQKDGITFVENKGDKNYSIFVYSDQQRDFVVSKL 604 Query: 552 KRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKR 611 KGK +QR KGLGE P + +TT++P TR+L+Q+T+ D Q+ D + D+LL Sbjct: 605 ---KGKYAIQRSKGLGENEPEMMWQTTMNPQTRKLIQVTMSDA--QKADDVFDLLLGNNL 659 Query: 612 SEDRRNWLQEKG 623 E R+ + E G Sbjct: 660 -EGRKVHIAENG 670 >UniRef50_Q9FAX2 DNA gyrase subunit B (Fragment) n=166 Tax=root RepID=GYRB_FLEJA Length = 481 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 170/480 (35%), Positives = 269/480 (56%), Gaps = 24/480 (5%) Query: 105 YQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTS 164 Y+ SGGLHGVG+S VNALS + V V R+G+++ + G ++ +G +TGT+ Sbjct: 5 YKVSGGLHGVGVSCVNALSTVLHVTVHREGKIFEQEYHRGVPQYAVREIG--ATTDTGTT 62 Query: 165 VHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR------WCYQDG 218 HF PD F ++ L L+ A L + IT DE EQ + + G Sbjct: 63 THFKPDGEIFTETSYNREILAGRLRELAYLNRKIRITLTDEREKDEQGNVLSEPFYSEGG 122 Query: 219 LNDYLAEA-VNGL--PTLPEKPFI-GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTM 274 + +++ NG LP FI + A AV+ +L + E + SYVN I T+ Sbjct: 123 IMEFVQMLDRNGRRNSLLPAPIFIEAHDAPSNVAVEVSLQYNDSFSENIF-SYVNNINTI 181 Query: 275 QGGTHVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQT 333 +GGTHV G R+ + + + + + + ++++ +D + + ++SVK+ +PQF GQT Sbjct: 182 EGGTHVAGFRRAITRVFKTYGDRNKLFEKSKIEVTGDDFREGLSAIVSVKVPEPQFEGQT 241 Query: 334 KERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRR--MRAAKKVV-RKK 390 K +L + V V D +L ++ + A + + +AQ R R A+++V RK Sbjct: 242 KTKLGNSDVMGVVDSAVADVLNAYLEEHPKEARTVINKVVLAAQAREAARKARQLVQRKS 301 Query: 391 LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV 450 + +G LPGKLADC+ D + EL+LVEGDSAGG+AKQ R+R +QAI+PL+GKILN + Sbjct: 302 VLTGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILNVEKA 361 Query: 451 SSDEVLASQEVHDISVAIGI------DPDSDDLSQLRYGKICILADADSDGLHIATLLCA 504 ++ ++E+ +I A+G+ D + +LS+LRY K+ I+ DAD DG HIATL+ Sbjct: 362 MEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIATLILT 421 Query: 505 LFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK-RKKGKPNVQRF 563 ++ +ALV+ G+VY+A PPLY + GKE YA TEE+++ + L K+ +QR+ Sbjct: 422 FVFRYMKALVEQGYVYIAQPPLYLVKKGKEQIYAWTEEQRKAAVATLAGGKEDSVTIQRY 481 >UniRef50_P77966 Ssp gyrB intein n=45 Tax=cellular organisms RepID=GYRB_SYNY3 Length = 1078 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 174/433 (40%), Positives = 245/433 (56%), Gaps = 11/433 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVI 58 T Y AD I+VL GLEPVR+RPGMY +T P +HL EV+DN++DEALAG+ +++ Sbjct: 5 TTNYGADQIQVLEGLEPVRKRPGMYIGSTGPKGLHHLVYEVVDNAIDEALAGYCTHIEID 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 ++AD S+ V+D+GRG+P DIHP G A+E +L LHAGGKF Y+ SGGLHGVG+SV Sbjct: 65 INADGSVTVVDNGRGIPTDIHPTTGRSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSP 177 VNALS+ VEV V R G+ + FE G + L+ G +TGT V F PD F D Sbjct: 125 VNALSEWVEVKVWRQGKEHFQRFERGNPIGTLEATPNEG-HSTGTQVSFLPDTQIFKDGI 183 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNT--EQRWCYQDGLNDYLAEAVNGLPTLPE 235 F L LK A L GV ITF D ++ E+++ Y+ G+ +Y+ L E Sbjct: 184 EFDYHTLASRLKELAYLNAGVRITFGDRRADSLKEEQFYYEGGIREYVTYMTTDKTPLHE 243 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 + + + V+ AL W + + N I T+ GGTH+ GL+ L + Sbjct: 244 EIIYTSGEKNDVQVEVALQWCVDAYSDTLLGFANNIRTIDGGTHLEGLKAVLTRTLNSVA 303 Query: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 RN L G L E+I + V+SVK+ DP+F GQTK +L + + V +V +A Sbjct: 304 RKRNKLKDGDSNLGGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGEAL 363 Query: 355 ILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNR 411 +L N A+ + E A+ + + A + V RK + LPGKLADC+++D + Sbjct: 364 TEFLEFNPGVADAIIEKAVQAFKAAEAARRARELVRRKSVLESSTLPGKLADCSSKDPSE 423 Query: 412 TELFLVEGDSAGG 424 +E+F+VEGDSAGG Sbjct: 424 SEIFIVEGDSAGG 436 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 129/220 (58%), Gaps = 9/220 (4%) Query: 416 LVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGIDPD 473 L G SAKQ RDR +QAI+PL+GKILN + ++ + E+ + ++ +GI D Sbjct: 863 LASGVFVHNSAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGD 922 Query: 474 SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 D+S LRY ++ I+ DAD DG HI TLL F ++ R LV G++Y+A PPLY+++ GK Sbjct: 923 DFDISSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACPPLYKLERGK 982 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 +Y ++ E + + Q +QRFKGLGEM P QL +TT++P +R + ++ I Sbjct: 983 NHFYCYSDRELQEQISQFP-PNANYTIQRFKGLGEMMPQQLWDTTMNPESRTMKRVHI-- 1039 Query: 594 EDDQRTDAMMDMLLAKKRSEDRRNWLQEKG---DMAEIEV 630 ED D + +L+ R RR +++ G D+ ++++ Sbjct: 1040 EDAAEADRIFTVLMG-DRVAPRREFIETYGTKLDLTDLDI 1078 >UniRef50_A1EGM8 DNA gyrase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=A1EGM8_9BACT Length = 428 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 177/441 (40%), Positives = 245/441 (55%), Gaps = 39/441 (8%) Query: 88 ELILCRLHAGGKFSNKN----YQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFEN 143 E+I+ LHA GKF N+ Y+ SGGLHGVG SVVNALS R+ + ++RDG ++ F Sbjct: 1 EVIMTVLHAAGKFDNETGESAYKTSGGLHGVGASVVNALSTRLTMEIKRDGFTWHQEFRG 60 Query: 144 G-EKVQDLQVVGTCGK--RNTGTSVHFWPDETFF------DSPRFSVSRLTHVLKAKAVL 194 G E V +L + GK R GT++ FWPD T F D F R+ L +A L Sbjct: 61 GGEPVAELAM----GKPSREHGTTIRFWPDPTIFVPEEGQDPLSFDKERVARSLSTRAHL 116 Query: 195 CPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDW--- 251 PG+ IT DE + +EQ W + AE ++ L T+ P G + +T AVD Sbjct: 117 NPGLAITMIDERDGSEQTWKAES-----FAEILDDLATVSSAPVFGPLS-ETAAVDTDKG 170 Query: 252 ------ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV 305 AL E + SY N I T QGGTH G+R LL A+ + + +L Sbjct: 171 RVEVMVALRVHAERASTIA-SYANNIVTPQGGTHEAGMRSALLKAINAYGKTNGLLKE-- 227 Query: 306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAA 365 L+AED+ + ++V++ +P FAGQTK++L++ +C V VV +N + A Sbjct: 228 PLTAEDVQEGLVAAVAVRVTEPLFAGQTKDKLANTECTGAVMQVVYRLLSKHFEENPKDA 287 Query: 366 ELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSA 422 + L A +A+ R A K V RK SG LPGKLADC D + EL++VEGDSA Sbjct: 288 KNLINRAALAAKARAAAEKARELVERKNPLSGGGLPGKLADCQESDPSLCELYIVEGDSA 347 Query: 423 GGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP-DSDDLSQLR 481 GGSAKQ RDR++QAI+PLKGK LN + + L SQE+ +I+ +G ++ D+S+LR Sbjct: 348 GGSAKQGRDRKFQAILPLKGKPLNVMKYDMGKALKSQEISNITTVLGCGVLNTFDISKLR 407 Query: 482 YGKICILADADSDGLHIATLL 502 Y ++ I+ DAD DG HI TLL Sbjct: 408 YHRVIIMTDADVDGSHIRTLL 428 >UniRef50_Q4UIX0 DNA topoisomerase II, putative n=2 Tax=Theileria RepID=Q4UIX0_THEAN Length = 922 Score = 258 bits (658), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 216/680 (31%), Positives = 321/680 (47%), Gaps = 135/680 (19%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVI 58 T Y++D I VL GL VR+RPGMY T + Q EV+DNSVDE LAG R+ V Sbjct: 103 TGEYSSDDIIVLEGLNAVRKRPGMYIGNTGERGVHQLLYEVLDNSVDEYLAGFCNRITVS 162 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN---------------- 102 L D S+EV D+GRG+P DI P+ G +E +L LH+GGKF + Sbjct: 163 LMKDGSVEVSDNGRGIPCDISPKTGKSGLETVLTVLHSGGKFQDIFPPNSTSMSSEDQND 222 Query: 103 --------------KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQ 148 K Y++S GLHGVG+SVVNALS+ + V+V + + Y+I G V+ Sbjct: 223 LKSRKKGEKEHEEKKVYEYSSGLHGVGLSVVNALSELLIVDVYKGPKSYHIELSKGNIVK 282 Query: 149 DLQVVG---TCGKRNT-----GTSVHFWPD----------------ETFFDSPR------ 178 L T K N GT++ F PD E +D+ Sbjct: 283 PLAEFSEPETTEKSNNNLKRYGTTIRFLPDYKNIFKTHHQHTETEKEEDYDTTTNKSGLD 342 Query: 179 ---------FSVSRLTHVLKAKAVLCPGVEITFKD----EINNTEQRWCYQD--GLNDYL 223 F + + K + L PG+ I D + NN Y++ G +L Sbjct: 343 TKCSGCKNGFILELIKTRAKELSYLNPGLSIKLVDYRITDENNEPWEETYRNTGGTRSFL 402 Query: 224 AEAVNG-------LPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 E + + + K I N V+ + W E L + Y N + T+ Sbjct: 403 EELIKDKTPLYKPISYITIKGVISNIN-----VEVSFSWSLESYTALIKGYANNVSTI-A 456 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 GTH++G + + + + VK L+ E I + V+SVK+ +F GQTK Sbjct: 457 GTHIDGFKISITRCVNGLLKKYGYFKGNVKPLNGEFIREGMTAVISVKLTGAEFDGQTKT 516 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM----RAAKKVVRKKL 391 +L + +V + F L N + LLA S A ++ R AK ++R+K Sbjct: 517 KLGNALVKTVTEKIVNEQFTNILENNKEL--LLAIHNKSQAAKKAFDAARTAKDLIRQKS 574 Query: 392 TSGPA-LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV 450 +S + + GKL +C++ + ELF+VEG+SA G+AKQAR+R++QA++PLKGKILN ++ Sbjct: 575 SSIVSNISGKLTECSSSKVENNELFIVEGESAAGNAKQARNRQFQAVLPLKGKILNIEKI 634 Query: 451 SSD-EVLASQEVHDI--SVAIGIDP----DSD---------------------------D 476 + + +VL +Q++ + S+ I I+P +D D Sbjct: 635 TDNSKVLENQQIQLLMNSIGISINPVTWRQNDLTEGTHMAMDRFIEMNSSKLTRKQIWLD 694 Query: 477 LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID--LGKE 534 LS+LRYGKI +L DAD DG H+ +LL L + +L HG VYVA PPLYRI K+ Sbjct: 695 LSKLRYGKIILLTDADVDGSHLKSLLLCLLYRLCPSLYLHGRVYVASPPLYRITNLRNKK 754 Query: 535 VYYALTEEEKEGVLEQLKRK 554 Y+ ++E +++L K Sbjct: 755 YIYSWSQEHLLKTIKELNSK 774 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 6/72 (8%) Query: 529 IDLGKEVYYALTEEEKEGVLE--QLKRKKGKPN----VQRFKGLGEMNPMQLRETTLDPN 582 I+L E+ +T++EK L+ + + K N +QRFKGLGEM QL ETT+DP Sbjct: 815 IELKTELGSNITKDEKSDELDLYNINKSFSKNNKHLIIQRFKGLGEMMANQLWETTMDPK 874 Query: 583 TRRLVQLTIDDE 594 R L ++ + E Sbjct: 875 KRILKRIVVSQE 886 >UniRef50_B2RL68 DNA topoisomerase IV B subunit n=60 Tax=Bacteria RepID=B2RL68_PORG3 Length = 644 Score = 256 bits (655), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 200/659 (30%), Positives = 322/659 (48%), Gaps = 91/659 (13%) Query: 5 YNADAIEVLTGLEPVRRRPGMYT----DTTRPNH----LGQEVIDNSVDEALAGHAKRVD 56 Y I+ L E +RRRPGMY D + + L +EV+DNSVDE + G K +D Sbjct: 11 YIESDIKTLEWDEHIRRRPGMYIGKLGDGSHADDGIYVLLKEVLDNSVDEFVMGAGKSID 70 Query: 57 VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 + + + ++ V D GRG+P+ + V A C+++ GGK +K ++ S GL+GVGI Sbjct: 71 ITIE-NGTVTVRDYGRGIPLG----KLVDAT----CKMNTGGKIDSKAFKKSVGLNGVGI 121 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 VNALS V V RDGQ + + E +++ V + +GT V F PD++ F + Sbjct: 122 KAVNALSTEFVVTVWRDGQTKRVRYSRAELLEETDPVPSG--EPSGTEVRFTPDDSLFRN 179 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 R+ + ++K L G+ + +++ + GL D LAE + G P Sbjct: 180 YRYQEEFVVSMIKNYTFLNTGLSFFYNG------KKFLSRKGLEDLLAENMTGDALYP-- 231 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 I + + DT+ ++ + + G+ S+VN T QGGTH++ R+ + ++EF Sbjct: 232 --IIHLS-DTD-IEIVVTHTQQYGDEFY-SFVNGQNTTQGGTHLSAFREAVARTIKEFY- 285 Query: 297 YRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCA-------AFVSGV 349 DI A +S+K+++P F QTK +L SR FV Sbjct: 286 -------SKNFEYSDIRSGMAAAISIKVEEPVFESQTKTKLGSRDMGPDGPTIQKFVGDF 338 Query: 350 VKDAFILWLNQNVQAAE-LLAEMAISSAQRR-MRAAKKVVRKKLTSGPALPGKLADCT-- 405 +K +L+ + + AE +L ++ S +R+ M K+ R++ KL DCT Sbjct: 339 LKKELDDYLHIHTETAEEMLRKIQQSERERKAMSGITKLARERAKKSNLHNKKLRDCTVH 398 Query: 406 -----AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE 460 A++ RT +F+ EG+SA GS RD YQA+ L+GK LN + ++ V ++E Sbjct: 399 LNDPKAKEPERTSIFITEGNSASGSITTCRDANYQAVFSLRGKPLNCFGLTKKVVYENEE 458 Query: 461 VHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 + + A+ I+ + L LRY ++ I DAD DG+HI L+ F++ F LV+ GHVY Sbjct: 459 FNLLQAALNIE---EGLDGLRYNRVIIATDADDDGMHIRLLIITFFLQFFPDLVRKGHVY 515 Query: 521 VALPPLYRI------------------------DLGKEV--YYALTEEEKEGVLEQLKRK 554 V PL+R+ D+ K V Y +E EK+ L+QL + Sbjct: 516 VLETPLFRVFLPPESKKQTFGATPKRGRKKQESDMPKPVTDIYCYSEAEKQAALKQLGK- 574 Query: 555 KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 K +V RFKGLGE++P Q ++ +D RL +++ ED + ++ + K SE Sbjct: 575 --KADVTRFKGLGEISPEQFKD-LIDEENIRLEPVSLKRED--KIKELLTFYMGKNTSE 628 >UniRef50_Q10XN8 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q10XN8_TRIEI Length = 891 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 168/438 (38%), Positives = 245/438 (55%), Gaps = 16/438 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y A+ I+VL GLE VR+RPGMY TT P +HL EV+DNS+DEALAG+ ++V Sbjct: 3 SNNYGAEQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 62 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+ D S++V DDGRG+PVD H + G A+E ++ LHAGGKF Y+ SGGLHGVG+SV Sbjct: 63 LNKDGSVKVTDDGRGIPVDTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVSV 122 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP- 177 VNALS+ VEV V RD + + +E G+ DL+ KR TGTSV F PD+ F + Sbjct: 123 VNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKSKPNKEKR-TGTSVQFLPDQEIFTTGI 181 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDE----INNTE---QRWCYQDGLNDYLAEAVNGL 230 +F + + L+ A L GV+IT D + + E + +CY+ G+ +Y+ Sbjct: 182 QFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNREK 241 Query: 231 PTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 +L E+ + V+ AL W + + N I T+ GGTH+ GL+ L Sbjct: 242 QSLHEEVIFVRGEKNDVQVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLTRT 301 Query: 291 MREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 M RN L L E++ + V+SVK+ +P+F GQTK +L + + V + Sbjct: 302 MNGIARKRNKLKDSDPNLGGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSL 361 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTA 406 V + +L+ N Q A+ + + AI + + A + V RK + LPGKLADC+ Sbjct: 362 VGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCST 421 Query: 407 QDLNRTELFLVEGDSAGG 424 ++ +E++LVEGDSA G Sbjct: 422 KNPEESEIYLVEGDSASG 439 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVA 467 N L G SAKQ RDR +QAI+PL+GKI+N + ++ + E+ + ++ Sbjct: 669 NTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSMITALG 728 Query: 468 IGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 +GI D D SQLRY K+ I+ DAD DG HI TLL F ++ RALV G++Y+A PPLY Sbjct: 729 LGIKGDEFDASQLRYHKVIIMTDADVDGSHIRTLLLTFFYRYQRALVDQGYIYIACPPLY 788 Query: 528 RIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLV 587 +++ G+ YY ++ E +++ +QRFKGLGEM P+QL +TT++P TR L Sbjct: 789 KVERGRNHYYCYSDRELNELIQNEFPDNANYTIQRFKGLGEMMPVQLWDTTMNPETRTLK 848 Query: 588 QLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEI 628 ++ I ED D + +L+ R RR +++ G +I Sbjct: 849 RVEI--EDAAEADRIFTVLMG-DRVAPRREFIETYGPKLKI 886 >UniRef50_Q1NK64 DNA topoisomerase II:ATP-binding region, ATPase-like n=3 Tax=Bacteria RepID=Q1NK64_9DELT Length = 614 Score = 248 bits (634), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 195/618 (31%), Positives = 304/618 (49%), Gaps = 70/618 (11%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYT----DTTRPNH----LGQEVIDNSVDEALAGHAK 53 + Y+ I+ L+ LE +R RPGMY + + P+ L +EVIDN VDE + G + Sbjct: 5 SAVYDESKIKTLSSLEHIRMRPGMYIGRLGNGSHPDDGIYILLKEVIDNGVDEFIMGAGR 64 Query: 54 RVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCR--LHAGGKFSNKNYQFSGGL 111 +D+ L D + + D GRG+P+ +L+ C ++ G K++ +QFS GL Sbjct: 65 AIDIALADDNVVTIRDYGRGIPLG----------KLVECVSVINTGAKYNTDAFQFSVGL 114 Query: 112 HGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDE 171 +GVG VNA+S R V RDG+ F G V + G + N GT V F PD Sbjct: 115 NGVGTKAVNAMSSRFVVTSFRDGEFARAKFARGVLVNEES--GRSREPN-GTLVEFRPDG 171 Query: 172 TFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLP 231 F F+ + LK + L G+ + F E + ++GL D LA +G Sbjct: 172 EMFPEYAFNRDFIRRRLKRYSYLNAGLTLNFDGE------SFYSENGLLDLLASETSGT- 224 Query: 232 TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAM 291 +L E + + V++A GE S+VN T +GGTH++ R+GLL + Sbjct: 225 SLYEPIY-----HREKTVEFAFSHTDGYGESYF-SFVNGTYTAEGGTHLSAFREGLLKGV 278 Query: 292 REFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 351 E+ G K D+ + ++VK+++P F QTK +L + + V+ Sbjct: 279 NEYA--------GKKFDGADVREGVVGAVAVKVREPIFESQTKNKLGNADIRGEIVTAVR 330 Query: 352 DAFILWLNQNVQAAELLAEMAISSAQRRM------RAAKKVVRKKLTSGPAL-------- 397 +A +L +N AEL+ + SA+ R + AK RK P L Sbjct: 331 EAVSAFLYKNTDIAELVIDKIQQSARVRKELQHVRKEAKAKARKVALKIPQLKDCKYHPA 390 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLA 457 PGK + +++ +FL EG SA GS ARD QA+ LKGK LN + + Sbjct: 391 PGKPSPAGRENM----VFLTEGQSASGSIVSARDPMTQAVFSLKGKPLNVFGQPMALLYK 446 Query: 458 SQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 + E+++I A+ ++ + + +LR+ KI I DAD DGLHI LL F+ +F +LVK G Sbjct: 447 NDEMYNIMRALDVE---ESIGRLRFDKIIIATDADVDGLHIRNLLLTFFLHYFESLVKRG 503 Query: 518 HVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQL--KRKKGKP-NVQRFKGLGEMNPMQL 574 HVY+ P+YR+ ++ +Y TE+E+ ++L + K +P V RFKGLGE++P + Sbjct: 504 HVYILETPIYRVRNKEQTFYCYTEKERREADQKLAGRGKTRRPVEVTRFKGLGEISPKEF 563 Query: 575 RETTLDPNTRRLVQLTID 592 ++ + RL Q+ ID Sbjct: 564 KQ--FIGSEMRLQQVDID 579 >UniRef50_B1ZME3 DNA topoisomerase type IIA subunit B region 2 domain protein n=42 Tax=Bacteria RepID=B1ZME3_OPITP Length = 629 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 183/600 (30%), Positives = 296/600 (49%), Gaps = 62/600 (10%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNH--------LGQEVIDNSVDEALAGHA 52 M Q Y +I+ L+ E +R RPGMY L +E IDNS+DE G+ Sbjct: 18 MAQAYTEASIKTLSSTEHIRLRPGMYIGRLGNGAHAEDGIYVLLKESIDNSIDEFTMGYG 77 Query: 53 KRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH 112 +++++ L D+ + V D GRG+P+ + + V +I + G K+ ++ ++ + GL+ Sbjct: 78 RKIEIELQ-DRMVRVRDYGRGIPLG----KVLECVSII----NTGAKYDSETFKKAVGLN 128 Query: 113 GVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDET 172 GVG VNALS RDGQ + F G+ +D ++ T +RN GT + F PDE Sbjct: 129 GVGQKAVNALSFSYRAQAFRDGQTKLVEFAQGKLRKDHKIAKTT-ERN-GTLIEFTPDEA 186 Query: 173 FFDSP-RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLP 231 F +F + +L A L G+ +TF + +E +GL D L + ++G P Sbjct: 187 LFGKDFKFRPEFIEDMLWNYAFLNRGLTLTFNGKAFRSE------NGLKDLLQKNLSGEP 240 Query: 232 TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAM 291 P I + G E ++ A GE S+VN T GGTH+ R+ L++ + Sbjct: 241 LYP----IIHLEG--EDMEVAFTHGAHYGEEYY-SFVNGQHTTMGGTHLAAFREALVETV 293 Query: 292 REFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAA------- 344 R F + A D+ +SV++ +P F QTK +L S A Sbjct: 294 RNFFKR--------DYDAADVRQSIDAAVSVRVMEPVFESQTKTKLGSTDIAPGGPSIRD 345 Query: 345 FVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA--KKVVRKKLTSGPALPGKLA 402 F+ V+ + +L++N + A+ L S + R A + + R++ KL Sbjct: 346 FIGKFVQQSLDGYLHKNRETADALRNKIEESERERKELAGIRSLARERAKKASLHNRKLR 405 Query: 403 DCTAQDLNRTE------LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVL 456 DC +R E LF+VEGDSA GS RD + QA+ LKGK LNT+ +S + Sbjct: 406 DCRLHLGDRNERAEESTLFIVEGDSAAGSLTATRDVQTQAVFALKGKPLNTFGLSKKVIY 465 Query: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516 ++E H + A+ ++ D + LRY ++ I DAD DG+HI LL + F++ F L+++ Sbjct: 466 ENEEFHLLQSALNVE---DSMDGLRYNRVVIATDADVDGMHIRLLLISFFLQFFPDLIRN 522 Query: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576 GH+++ PL+R+ KE Y +EEEK+ +++L + RFKGLGE++ + ++ Sbjct: 523 GHLFILETPLFRVRNKKETIYCYSEEEKQAAMKKL---GASHEITRFKGLGEISAGEFKD 579 >UniRef50_D2QHC5 DNA topoisomerase type IIA subunit B region 2 domain protein n=6 Tax=Bacteroidetes RepID=D2QHC5_9SPHI Length = 632 Score = 246 bits (627), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 187/598 (31%), Positives = 292/598 (48%), Gaps = 66/598 (11%) Query: 5 YNADAIEVLTGLEPVRRRPGMYT----DTTRPNH----LGQEVIDNSVDEALAGHAKRVD 56 YN D+I L E +R RPGMY D + + L +E IDN +DE + G K ++ Sbjct: 11 YNEDSIRSLDWREHIRLRPGMYIGKLGDGSAADDGIYVLIKETIDNCIDEHVMGFGKVIE 70 Query: 57 VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 V + D +EV D GRG+P+ V ++ +++ GGK+ + +Q S GL+GVG Sbjct: 71 VRV-TDHRVEVRDFGRGIPLG--------KVVEVVSKINTGGKYDSGAFQKSVGLNGVGT 121 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 VNALS V R+G+ F+ GE Q + T +RN GT + F PD+T F Sbjct: 122 KAVNALSSYFRVQSFREGKTVWAEFDRGELKQRGEDATT--ERN-GTLICFEPDDTVFKH 178 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 F L +++ L G+ I+F +Q++ Q+GL D L + Sbjct: 179 FHFIPQFLENMIWNYCYLNAGLTISF------NKQKYLSQNGLLDLLRDKTKKDEDSLRY 232 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTE--SYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 P I D E + L G + E S+VN T QGGTH+N L++ +++ +R Sbjct: 233 PIIHLKGNDLE------IALTHGNQYGEEYYSFVNGQYTTQGGTHLNALKEAVVETVRRH 286 Query: 295 CEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQ---------CAAF 345 + DI +S+++Q+P F QTK +L S+ ++F Sbjct: 287 FDK--------NYEVSDIRSSIIAAVSIRVQEPVFESQTKTKLGSQNMSPEPNAQSVSSF 338 Query: 346 VSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA--KKVVRKKLTSGPALPGKLAD 403 V VK+ +L+ N E L + S + R A KK+ + KL D Sbjct: 339 VKDFVKERLDDFLHMNPAVREALKKRIEQSERERKELAGIKKLANDRAKKASLHNKKLRD 398 Query: 404 C-------TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVL 456 C A D ++ LF+ EGDSA GS ++R+ + QA+ L+GK LN + ++ V Sbjct: 399 CRNHLPDLKADDRYQSTLFITEGDSASGSITKSRNVQSQAVFSLRGKPLNCFGLTKKVVY 458 Query: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516 ++E + + A+ I+ D L LRY +I I DAD DG+HI L+ F++ F LV++ Sbjct: 459 ENEEFNLLQHALDIE---DGLEGLRYNRIVIATDADVDGMHIRLLMLTFFLQFFPDLVRN 515 Query: 517 GHVYVALPPLYRI---DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNP 571 GH+Y+ PL+R+ KE Y +E+EK+ +++L + K + RFKGLGE++P Sbjct: 516 GHLYILETPLFRVRNPKNHKETTYCYSEDEKQKAIDKLTKAAKKVEITRFKGLGEISP 573 >UniRef50_Q9X3Y5 DNA gyrase subunit B (Fragment) n=740 Tax=cellular organisms RepID=GYRB_BACMY Length = 404 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 147/407 (36%), Positives = 225/407 (55%), Gaps = 10/407 (2%) Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG 154 HAGGKF Y+ SGGLHGVG SVVNALS +EV V RDG+++ +E G DL+V+G Sbjct: 1 HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLRVIG 60 Query: 155 TCGKRNTGTSVHFWPD-ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR- 212 + TGT F PD E F ++ + L ++ A L +++T +D+ + +++ Sbjct: 61 ETDR--TGTITRFKPDSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE 118 Query: 213 WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIP 272 + Y+ G+ Y+ + E+P + + D V+ AL + EG S+ N I Sbjct: 119 FHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGIQVEVALQY-NEGYTNHIYSFTNNIH 177 Query: 273 TMQGGTHVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T +GGTH G + L + ++ NIL L+ ED+ + ++S+K +PQF G Sbjct: 178 TYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 237 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAE---MAISSAQRRMRAAKKVVR 388 QTK +L + + V +AF +L +N A + + MA + +A + R Sbjct: 238 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRR 297 Query: 389 KKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW 448 K +LPGKLADC+++D +E+++VEGDSAGGSAKQ RDR +QAI+PLKGKI+N Sbjct: 298 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 357 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDSD-DLSQLRYGKICILADADSD 494 + D++L++ EV I AIG + D + + RY K+ I+ DAD D Sbjct: 358 KARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVD 404 >UniRef50_Q59189 DNA topoisomerase 4 subunit B n=27 Tax=Bacteria RepID=PARE_BORBU Length = 599 Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 186/636 (29%), Positives = 315/636 (49%), Gaps = 58/636 (9%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYT----DTTRPNH----LGQEVIDNSVDEALAGHAK 53 TQ Y+ I L+ LE +R R GMY D + + L +E+IDNS+DE + G+ Sbjct: 3 TQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYGN 62 Query: 54 RVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 + I + + + D GRG+P+ + + +V +I + G K+++ +QFS GL+G Sbjct: 63 EI-FIKKENNLISIRDYGRGIPLG----KVIESVSVI----NTGAKYNDDVFQFSVGLNG 113 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF 173 VG VNALS + V R+G+ + F G+ ++ ++ + GT V F D Sbjct: 114 VGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREIKSS---DKDGTYVEFLADSEI 170 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 F +S L A L G+ I + D+I + ++GL D+L + L Sbjct: 171 FGKYSYSEDFLKRRFFHYACLNKGLIINYNDQI------FESKNGLLDFLNSEIKSDDLL 224 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 + + ++ +++A GE S+VN T GGTH G R+G + A+ + Sbjct: 225 YDIVYYS-----SKTLEFAFSHTNNYGETYF-SFVNGQYTNDGGTHQTGFREGFVRAIND 278 Query: 294 FCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 F + S+ DI + LSVK++DP F QTK +L + + V+ V+ Sbjct: 279 FLK--------KTYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEVQKI 330 Query: 354 FILWLNQNVQAAELLAEMAISSAQRR--MRAAKKVVRKKLTSGPALPGKLADC------T 405 L ++ A+L+ + + + + R + + +K R++ KL DC + Sbjct: 331 ISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKLKDCKFHFNDS 390 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 ++ +T +FL EGDSA GS RD QAI L+GK N +E + E+ ++E++++ Sbjct: 391 SKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEELYNMM 450 Query: 466 VAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 VA+GI+ + + LRY K+ I DAD DG HI LL F+ F L+ +GH+Y+ P Sbjct: 451 VALGIE---ESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHMYILETP 507 Query: 526 LYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 L+R+ K Y +EEEK+ + +L KG V RFKGLGE++P + + +D N+ + Sbjct: 508 LFRVRNKKITTYCYSEEEKQKAILEL---KGGCEVTRFKGLGEISPNEFK-GFIDINSIK 563 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 L ++ + + + + M + + +RRN++ E Sbjct: 564 LTKVDLFNIKEIKEKLGFYM---GQNTPERRNFIME 596 >UniRef50_A7ASL8 DNA gyrase subunit B, putative n=1 Tax=Babesia bovis RepID=A7ASL8_BABBO Length = 944 Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 176/563 (31%), Positives = 275/563 (48%), Gaps = 100/563 (17%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVILHA 61 Y+ D I VL GLE VR+RPGMY T L Q E++DNSVDE LAG ++ V L A Sbjct: 150 YSTDDIVVLQGLEAVRKRPGMYIGNTTETGLHQLLFEILDNSVDEYLAGCCNKITVTLRA 209 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF--------------------- 100 D S E+ D+GRG+P D+ + G +E +L LH+GGKF Sbjct: 210 DGSAEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFNDTTSKPTPEDQVDEFYDTHI 269 Query: 101 -------------------SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAF 141 S+ Y+++ GLHGVG+SVVNALS + +V + + Y+I Sbjct: 270 SRKFRSQHVRGLRKRLKDASSNPYEYASGLHGVGLSVVNALSAWLRADVYKGTKQYSIQL 329 Query: 142 ENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEIT 201 G + L V C KR TGT++ F PD +D ++ H + + CPG Sbjct: 330 SRGMVTEPLSV-SKCAKR-TGTTISFMPD---YD--HVFIAHHDHQVDTE---CPGCASA 379 Query: 202 FK-DEINNT----------------------------EQRWCYQDGLNDYLAEAVNGLPT 232 F D + N E+ + ++ G ++L + + Sbjct: 380 FNHDTVRNRIEELSYVNPMLTLRLVDERLVNEDGSFHEETFMHKGGTREFLQDIIKDRVP 439 Query: 233 LPEKPFIGNFAGDTEAVDW--ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 L + I N G + V+ +L W E + + N + T GTH+ G + + A Sbjct: 440 LYKSANIINIRGKSGGVEVEVSLSWAAETYAAQLKGFANNVST-SAGTHIEGFKAAITKA 498 Query: 291 MREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 + C + + +S E I + ++SVK+ +F GQTK +L ++ V + Sbjct: 499 VNHACRRAGLFKHKAPSISGEFIREGLTAIISVKLMGAEFDGQTKSKLGNQIARTAVERI 558 Query: 350 VKDAFILWLNQNVQAAELLAEMAISS--AQRRMRAAKKVVRKK----LTSGPALPGKLAD 403 V L ++ Q + +I++ A + AK++VR+K LT+G LP KL+D Sbjct: 559 VSYQMNEILEKHPQLLTAIYNKSIAAKRAFEVAKHAKELVRQKNANFLTTG--LPAKLSD 616 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD-EVLASQEVH 462 CT+ D+ TELF+VEG+SA G+AKQAR+R +QA++PLKGKILN ++SSD +V+ ++E+ Sbjct: 617 CTSNDIGLTELFIVEGESAAGNAKQARNRRFQAVLPLKGKILNIEKISSDLKVMENEEIK 676 Query: 463 DI--SVAIGIDPDS---DDLSQL 480 + S+ + ++P + D LS + Sbjct: 677 LLISSIGLAVNPQTWRQDTLSHV 699 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 100/205 (48%), Gaps = 40/205 (19%) Query: 442 GKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQL--RYGKICILADADSDGLHIA 499 G ++T E SS + + + V I D+ L+QL RYGKI +L DAD DG H+ Sbjct: 718 GTTVDTTEASSSDSVDNNNVTATDNLGNIPVDASSLAQLPLRYGKIILLTDADVDGAHLR 777 Query: 500 TLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKE------------VYYALTEEE---- 543 LL L + L +HG VY+A PPLYRI ++ YA +EEE Sbjct: 778 ILLLGLLFRICPQLYEHGRVYIACPPLYRITNMRKGNKARNGPNASAYTYAWSEEELPIA 837 Query: 544 --------------KEGVLEQLKRKKGKPN------VQRFKGLGEMNPMQLRETTLDPNT 583 E + + + + KP+ VQRFKGLGEM QL +TT++P+ Sbjct: 838 INKEMAPYNLDSVPSEDIADTEQTPEIKPDSMRGITVQRFKGLGEMMAQQLWDTTMNPDK 897 Query: 584 RRLVQLTIDDEDDQRTDAMMDMLLA 608 R L ++++ +D R M+++L+ Sbjct: 898 RILRRISV--QDGMRASKMLELLMG 920 >UniRef50_UPI00016B23A5 DNA gyrase subunit B n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B23A5 Length = 486 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 155/483 (32%), Positives = 250/483 (51%), Gaps = 30/483 (6%) Query: 173 FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPT 232 F ++ F + + L+ +A L GV + DE + + ++ G+ Y+ G Sbjct: 4 FKETVNFDYKWVVNYLRHQAYLTKGVYTSVVDERTGERKAFYFEGGIKSYVKNLNIGKEV 63 Query: 233 LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 L E F + V+ A+ + E++ + + N + T GGTH+ G R L + Sbjct: 64 LSEDIFYVEKQIEDCMVEIAVQYNDTYVEVV-KPFANNVLTPDGGTHLVGFRTALTRVIN 122 Query: 293 EFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 351 ++ N+L + L+ +DI + V+ VK+ DPQF GQTK +L + + +V V+ Sbjct: 123 DYARKNNLLKEKEDNLTGDDIREGLTAVILVKLPDPQFEGQTKNKLGNPEMRRYVDQVMS 182 Query: 352 DAFILWLNQNVQAAELL---AEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408 + F +L +N A+ + A +A + + A V+RK G LP KL DC++++ Sbjct: 183 EYFAYYLEENPATAKKVVGKATLAARARKAARAARDNVIRKGAFEGLNLPSKLTDCSSRN 242 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 ELF+VEG+SA GSAK RD QAI+PL+GK+LNT D++ A+ E+ + A+ Sbjct: 243 RKDCELFIVEGNSAAGSAKDGRDSTIQAILPLRGKVLNTERARFDKMFANAEIVSLIKAM 302 Query: 469 GID-PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 G+ D D+S +RY KI + DAD DG HI+TLL F ++ +++ GHVY+A PPL+ Sbjct: 303 GVGIGDQFDISGIRYDKIIFMTDADVDGAHISTLLMTFFFRYMSEVIEAGHVYLAKPPLF 362 Query: 528 RIDLG----KEVYYALTEEE-KEGVLEQLKRKK----------------GKPNVQRFKGL 566 + G +++ Y E +E + E++ +K G QRFKGL Sbjct: 363 GLSKGTGSNRKIDYIYDEAALEEKLTEKINERKAAGVKIDENAERFKQAGYTAQQRFKGL 422 Query: 567 GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 GEM+ QL ETT++P R LV++ I ED +R DA+ L+ E R+N++Q Sbjct: 423 GEMDASQLWETTMNPENRTLVKVNI--EDAERADAIFTKLMGDS-VELRKNFIQTNAAKV 479 Query: 627 EIE 629 +E Sbjct: 480 NVE 482 >UniRef50_Q8GD47 DNA gyrase subunit B (Fragment) n=21 Tax=Bacteria RepID=Q8GD47_9MOLU Length = 393 Score = 231 bits (590), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 149/398 (37%), Positives = 227/398 (57%), Gaps = 18/398 (4%) Query: 105 YQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQ-DLQVVGTCGKRNTGT 163 Y+ SGGLHGVG SVVNALS V+V + R+G+ +++ F +G Q +L ++G K TGT Sbjct: 1 YKVSGGLHGVGASVVNALSLYVDVVIEREGKKFHMLFSDGGTAQTELAIIGESNK--TGT 58 Query: 164 SVHFWPD-ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDY 222 +V F PD E F ++ F + + + +K A L G++I+ DE N + + +G+ DY Sbjct: 59 TVRFKPDPEIFKETVTFDYTTIRNKVKQLAYLNKGLKISLNDERINKSVDFHFPNGIVDY 118 Query: 223 LAEAVNGLPTLPEKPFI--GNFAGDTE--AVDWALLWLPEGGELLTESYVNLIPTMQGGT 278 + E + F G AGD V+ AL + E E L ++VN I T +GG Sbjct: 119 IREENETKAKINPTIFYVDGKEAGDEGDIEVEIALQYNSEYNENLI-TFVNNINTHEGGA 177 Query: 279 HVNGLRQGLLDAMREFCE---YRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 H +GLRQ L+ + + E +N P+ K S +DI + +LS++ DPQF GQTK Sbjct: 178 HEDGLRQALVRIINRYAEKVAQQNKQPQ--KFSWDDIKEGMICILSIRHTDPQFEGQTKT 235 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM---RAAKKVVRKKLT 392 +L++ V ++ +F +L +N A+ + + +++ + R+ RA ++ RK Sbjct: 236 KLANPDAKRVVDAILGKSFEEFLFENPNDAKAILDKNVNAQKARIAAQRAREETRRKGAL 295 Query: 393 SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSS 452 +LPGKLADC + D + +EL+LVEGDSAGGSAK R+R +QAI+PL+GK+LN V Sbjct: 296 DTFSLPGKLADCESNDSSISELYLVEGDSAGGSAKTGRNRHFQAILPLRGKVLNVERVQE 355 Query: 453 DEVLASQEVHDISVAIGIDPDSD-DLSQLRYGKICILA 489 A+ E+ I A+G D DLS++RYGKI I+ Sbjct: 356 VRAFANTEIKSIVTAVGTGIKEDIDLSKIRYGKIVIMT 393 >UniRef50_Q2JC55 DNA topoisomerase II n=4 Tax=Actinomycetales RepID=Q2JC55_FRASC Length = 658 Score = 231 bits (589), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 143/393 (36%), Positives = 208/393 (52%), Gaps = 10/393 (2%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y A +I + +GL VRR P MY T T +HL E+IDN+VDE G ++V+LHA Sbjct: 14 YTARSIVLFSGLTAVRRNPSMYIGSTGTEGLHHLVFELIDNAVDEFAVGTCGLIEVVLHA 73 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S V DDGRG+PVD HP+ VPA+++++ LH+GGKF Y+ S GLHGVG+S VNA Sbjct: 74 DGSCSVSDDGRGIPVDEHPDLRVPALQVVMTTLHSGGKFQGDTYRRSAGLHGVGLSCVNA 133 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS+ + V V RDG +Y ++ GE + +VGT + GT V F PD FD+ F Sbjct: 134 LSEWLRVEVHRDGGMYTQSYGRGEPTTTVDMVGTSDRH--GTLVRFRPDMMIFDAAAFVT 191 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGN 241 L + A L PG+ + DE +TE+ + Y +G+ +L + + +P I Sbjct: 192 GVLAARMAELAFLHPGLVLRLVDERTDTEETFDYVEGVKGFLTQRNRDAEVVHPEPIIIT 251 Query: 242 FAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNIL 301 +D AL W EG S+VN + T QGG HV+ LR GL A+ + +L Sbjct: 252 AERSDLVLDVALQW-TEGYAEEMSSFVNAVRTDQGGAHVDALRTGLASAINDHASMNRML 310 Query: 302 PR--GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLN 359 G +++ DI + V+S++M P+F GQTK RL S + FV V + L Sbjct: 311 DSFAGERITTNDILEGLTAVVSLRMDSPRFDGQTKRRLQSPEVGPFVRRAVAETVAATLR 370 Query: 360 QNVQAAELLAEMAISSAQRRM--RAAKKVVRKK 390 + + A+ + + R+ R A + VR + Sbjct: 371 REPGLGARVVARALDATRARLAARLAGRAVRYQ 403 >UniRef50_Q44272 DNA gyrase subunit B (Fragment) n=2942 Tax=cellular organisms RepID=GYRB_ACIG9 Length = 390 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 149/393 (37%), Positives = 218/393 (55%), Gaps = 10/393 (2%) Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNT 161 + +Y+ SGGLHGVG+SVVNALS+++E+ + R G+++ + +G+ L+VVG + T Sbjct: 1 DNSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDTNR--T 58 Query: 162 GTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLND 221 GT V FWP F F+V L L+ + L GV I +DE N E + Y+ GL++ Sbjct: 59 GTRVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERINAEHVFDYEGGLSE 118 Query: 222 YLAEAVNGLPTLPEK-PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHV 280 ++ G L + F A + V+ AL W E + + N IP GGTH+ Sbjct: 119 FVKYINEGKTHLNDIFHFTAAQADNGITVEVALQWNDSYQENV-RCFTNNIPQKDGGTHL 177 Query: 281 NGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS 339 G R L + + + NIL + V +S +D + ++SVK+ DP+F+ QTKE+L S Sbjct: 178 AGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVS 237 Query: 340 RQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA---KKVVRKKLTSGPA 396 + V + AF +L +N QAA+ +A I +A+ R A + RK Sbjct: 238 SEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAG 297 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVL 456 LPGKLADC +D +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN D ++ Sbjct: 298 LPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMI 357 Query: 457 ASQEVHDISVAI--GIDPDSDDLSQLRYGKICI 487 +S EV + A+ GI + + +LRY KI I Sbjct: 358 SSAEVGTLITALGCGIGREEYNPDKLRYHKIII 390 >UniRef50_C0W359 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W359_9ACTO Length = 746 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 142/395 (35%), Positives = 219/395 (55%), Gaps = 20/395 (5%) Query: 246 TEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR----NIL 301 T +VD AL W G + + S+VN+I T GGTH+ G Q + +R+ + + Sbjct: 341 TCSVDVALRW-GIGYDTIERSFVNIIATPMGGTHLTGFEQAVTKVLRKQIDSNARALKVT 399 Query: 302 PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 R K+ +DI V++V++ +PQF GQTKE L + V+ VV+ L + Sbjct: 400 ARDGKIEKDDILAGMTAVVTVRVPEPQFEGQTKEVLGTAPVRQIVAKVVEKELTALLTSS 459 Query: 362 VQ----AAELLAEMAISSAQRRM--RAAKKVVRKKLT-SGPALPGKLADCTAQDLNRTEL 414 + + L E + + R+ R K++ R+K LP KLADC + D+ +EL Sbjct: 460 KRDLKTQSRALQEKVVGEMRARISARMHKEITRRKTALETSTLPAKLADCRSDDVAASEL 519 Query: 415 FLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD- 473 F+VEGDSA G+AK AR+ E+QA++P++GKILN + S ++L + E I +G Sbjct: 520 FIVEGDSALGTAKNARNSEFQALLPIRGKILNVQKASQADMLRNAECSAIIQVVGAGSGR 579 Query: 474 SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG- 532 + DL RYGK+ ++ DAD DG HI TLL LF ++ R +++ G VY A+PPL+RI++ Sbjct: 580 TFDLDSARYGKVILMTDADVDGAHIRTLLLTLFFRYMRPMIEAGRVYAAVPPLHRIEVSA 639 Query: 533 -----KEVYYALTEEEKEGVLEQL-KRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 KEV Y +++E L +L K+ + QR+KGLGEM+ QL ETT++P R L Sbjct: 640 QGRRKKEVIYTYSDDELVRTLRKLEKQGRSFKEPQRYKGLGEMDAHQLAETTMEPEHRTL 699 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 ++T+ DE + + LL E RR+++ E Sbjct: 700 RRITLGDEAELLEAENVFELLMGSSVEPRRDFIVE 734 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/229 (40%), Positives = 130/229 (56%), Gaps = 26/229 (11%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + +Y+A + VL GLE VR+RPGMY TD H E+IDNSVDEAL G+ + V Sbjct: 5 SSSYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIIDNSVDEALEGYGDSIAVT 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 +H D S+EV D+GRG+PVD+ P G+ VEL+ +LHAGGKF +Y +GGLHGVG SV Sbjct: 65 VHEDGSIEVRDNGRGVPVDVEPGSGLTGVELVYTKLHAGGKFGGGSYGAAGGLHGVGASV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENG----------------------EKVQDLQVVGTC 156 VNALS+R++V V R G+ Y ++F G + +L+V+G Sbjct: 125 VNALSERMDVAVDRGGKTYAMSFHRGVPGVFDDPDPAHPRPDTPFTEYTEASELRVIGKV 184 Query: 157 GKRNTGTSVHFWPDETFFDSP-RFSVSRLTHVLKAKAVLCPGVEITFKD 204 + +GT V +W D F P + + L L+ + L PG+ +T D Sbjct: 185 KRGVSGTRVRYWADPQIFPRPSEYDAAALRARLRQTSFLVPGLSLTLTD 233 >UniRef50_C7PPD8 DNA topoisomerase type IIA subunit B region 2 domain protein n=23 Tax=Bacteria RepID=C7PPD8_CHIPD Length = 640 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 186/605 (30%), Positives = 297/605 (49%), Gaps = 73/605 (12%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYT----DTTRPNH----LGQEVIDNSVDEALAGHA 52 ++ Y D+I L E +R RPGMY D + + L +EV DN +DE G Sbjct: 9 LSAAYTEDSIRSLDWREHIRLRPGMYIGKLGDGSSMDDGIYILLKEVADNCIDEHTMGFG 68 Query: 53 KRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH 112 K++D+ + + ++ + D GRG+P+ V ++ +++ G K+ +K +Q S GL+ Sbjct: 69 KQIDIRV-TEHNVTIRDYGRGIPL--------GKVVDVVSKINTGAKYDSKAFQKSVGLN 119 Query: 113 GVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDET 172 GVG VNALS V R+G+ FE G ++ + T GT V F PD+T Sbjct: 120 GVGTKAVNALSSYFRVESFREGRGKVAEFERGNLTKEHKEANTS--EPNGTLVTFTPDDT 177 Query: 173 FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPT 232 F + RF L + + L G+ I+F +++ ++GL D L N Sbjct: 178 VFRNYRFIPEFLENQIWNYCFLNAGLTISFNG------KKYISKNGLLDLLQRKTN--ED 229 Query: 233 LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 P I + G E ++ A+ + GE S+VN T QGGTH+ R+ + +R Sbjct: 230 ELRYPII-HLKG--EDIEVAITHENQYGEEYY-SFVNGQHTTQGGTHLAAFREAFVKTLR 285 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 +F Y+ A DI +SV++Q+P F QTK +L S F +G Sbjct: 286 DF--YKK------DYEATDIRASICAAISVRVQEPVFESQTKTKLGS--LTVFENGPSMK 335 Query: 353 AFIL---------WLNQNVQAAELLAEMAISSAQRRMRAA--KKVVRKKLTSGPALPGKL 401 AF+L +L++N AE L + S + R A KK+ ++ KL Sbjct: 336 AFVLDFLSKHLDDFLHKNPTTAEALKKRIEQSERERKELAGIKKLANERAKKANLHNRKL 395 Query: 402 ADC--------TAQDLN-------RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN 446 DC + +D N T +F+ EGDSA GS ++R+ E QA+ L+GK LN Sbjct: 396 RDCRIHLNEEVSGKDKNDLETKRLNTTIFITEGDSASGSITKSRNVETQAVFSLRGKPLN 455 Query: 447 TWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALF 506 ++ ++ V ++E + + A+ I+ + L LRY +I + DAD DG+HI LL F Sbjct: 456 SFGLTKKIVYENEEFNLLQHALNIE---EGLEGLRYNRIVVATDADVDGMHIRLLLLTFF 512 Query: 507 VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL 566 ++ F LVK+GH+Y+ PL+R+ ++ Y T+EE+ ++ +K+ KP + RFKGL Sbjct: 513 LQFFPDLVKNGHLYILETPLFRVRNKQQTIYCYTDEER---IKAIKKLGNKPEITRFKGL 569 Query: 567 GEMNP 571 GE++P Sbjct: 570 GEISP 574 >UniRef50_D2RAT5 DNA gyrase, B subunit, C-terminal domain protein n=10 Tax=Bifidobacteriaceae RepID=D2RAT5_GARVA Length = 792 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 148/410 (36%), Positives = 231/410 (56%), Gaps = 33/410 (8%) Query: 227 VNGLPTLPEKPFIGNFAGDTEA--------VDWALLWLPEGGELLTESYVNLIPTMQGGT 278 ++G T E+ + AGD A VD A+ W+ G + S+VN++ T GG Sbjct: 362 ISGEDTYVEETQAVDSAGDLHAQQVTRKCGVDIAMRWV-NGYDSTIISFVNVVETPGGGM 420 Query: 279 HVNGLRQGLLDAMREFCEYR------NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQ 332 HV+G QGL +R+ E N+ K+ +DI V++V++ +PQF GQ Sbjct: 421 HVDGFLQGLTKQIRKAVEDNARKLKVNLKDSNTKIERDDITAGLVAVVTVRIAEPQFQGQ 480 Query: 333 TKERLSSRQCAAFVSGVVKDAFILWLNQNV-----QAAELLAEMAISSAQRRMRA--AKK 385 TK+ L + Q V+ + F + + Q++ +L E +S R++A K+ Sbjct: 481 TKDVLGTAQVKPIVTKMTDAQFGEMITGSKRGFKEQSSRVL-EKIVSEMHARIQARKTKE 539 Query: 386 VVRKK-LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKI 444 V R+K ++P KL+DC + + ELF+VEGDSA G+AK AR+ +QA++P++GKI Sbjct: 540 VTRRKNALESASMPPKLSDCQPGNDDVAELFIVEGDSALGTAKAARNSAFQALLPIRGKI 599 Query: 445 LNTWEVSSDEVLASQEVHDISVAIGIDPDSD-DLSQLRYGKICILADADSDGLHIATLLC 503 LN + S ++L+++E I +G + D+SQ RY KI ++ DAD DG HI LL Sbjct: 600 LNVQKASLAQMLSNKECAAIIQVVGAGSGASFDISQARYNKIVMMTDADVDGAHIRILLL 659 Query: 504 ALFVKHFRALVKHGHVYVALPPLYRIDL-GK---EVYYALTEEEKEGVLEQLKRK--KGK 557 LF ++ R L++HGHVY A+PPL+RI L GK E Y +++E G L+ L+ K Sbjct: 660 TLFYRYMRPLIEHGHVYAAVPPLHRIALAGKRKGEYIYTYSDDELAGKLDDLQAKGIDFN 719 Query: 558 PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLL 607 ++QR+KGLGEM+ QL +TT+DP TR L ++ + ED Q+ + D+L+ Sbjct: 720 SDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRM--EDAQQASEVFDLLM 767 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 99/231 (42%), Positives = 138/231 (59%), Gaps = 28/231 (12%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y+AD++ VL GL+ VR+RPGMY TT H E+IDN+VDEALAG + V L Sbjct: 6 EQYDADSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGACDHIIVTL 65 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S+EV D+GRG+PVD+ P+ + VE++L +LHAG KF N +Y +GGLHGVG SVV Sbjct: 66 HDDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGSSVV 125 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGE------------------------KVQDLQVVGT 155 NALS R++V V RDG+ +++AF G K +L+++GT Sbjct: 126 NALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADPEHPSPASPFKRTRKNKSTELEIIGT 185 Query: 156 CGKRNTGTSVHFWPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 + TGT V +W D F+S FS +L ++ + L PG++IT DE Sbjct: 186 VSPKTTGTRVRYWADPEIFNSTAHFSYEQLIARVRQTSFLVPGLKITVIDE 236 >UniRef50_D2QB32 GyrB2 DNA gyrase subunit B n=8 Tax=Bifidobacterium RepID=D2QB32_9BIFI Length = 778 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 136/384 (35%), Positives = 218/384 (56%), Gaps = 29/384 (7%) Query: 248 AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR------NIL 301 AVD A+ W +G + S+VN++ T GG HV+G QG+ +R+ E N+ Sbjct: 377 AVDIAMRWT-DGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARKLKVNLK 435 Query: 302 PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 +K+ +DI V++V++ +PQF GQTK+ L + Q V+ + F + + Sbjct: 436 DSNMKVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFGEMITGS 495 Query: 362 VQA---------AELLAEMAISSAQRRMRAAKKVVRKK-LTSGPALPGKLADCTAQDLNR 411 + +++ EM A+ + R K+V R+K ++P KL+DC + + Sbjct: 496 KRGYKEQSGRVLEKIVGEM---HARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDV 552 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 ELF+VEGDSA G+AK AR+ +QA++P++GKILN + S ++L+++E I +G Sbjct: 553 AELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAG 612 Query: 472 PDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID 530 + D+ Q RY KI ++ DAD DG HI LL LF ++ R L++HGHVY A+PPL+RI Sbjct: 613 SGASFDIEQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIA 672 Query: 531 LG----KEVYYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPMQLRETTLDPNTR 584 L E Y +++E G L +L+RK N +QR+KGLGEM+ QL +TT+DP TR Sbjct: 673 LTGAHKGEYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTR 732 Query: 585 RLVQLTIDDEDDQRTDAMMDMLLA 608 L ++ + ED ++ + + +L+ Sbjct: 733 MLRRIRM--EDAEQANEIFSLLMG 754 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 136/229 (59%), Gaps = 28/229 (12%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y A ++ VL GL+ VR+RPGMY TT H E+IDNSVDEALAG + V LH+ Sbjct: 6 YGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGACNHIVVTLHS 65 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S+EV D+GRG+PVD+ P+ + VE++L +LHAG KF N +Y SGGLHGVG SVVNA Sbjct: 66 DGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSSVVNA 125 Query: 122 LSKRVEVNVRRDGQVYNIAFENGE------------------------KVQDLQVVGTCG 157 LS R++V V RDG+ ++++F G + +L+++G Sbjct: 126 LSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELEIIGKVS 185 Query: 158 KRNTGTSVHFWPD-ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 + TGT + +W D E F D+ FS +L ++ + L PG++IT DE Sbjct: 186 PKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDE 234 >UniRef50_B6XTR9 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XTR9_9BIFI Length = 783 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 210/369 (56%), Gaps = 27/369 (7%) Query: 248 AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR------NIL 301 AVD A+ W G + S+VN++ T GGTHV+G G+ +R+ E N+ Sbjct: 382 AVDIAMRWT-NGYDTTMRSFVNVVETPGGGTHVDGYLLGMTKQIRKAIEDNARKLKVNLK 440 Query: 302 PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 +K+ +DI V++V++ +PQF GQTK+ L + Q VS + F + + Sbjct: 441 DSNMKVERDDILSGLVAVITVRIAEPQFQGQTKDVLGTAQVKPIVSKMTDKQFGEMITGS 500 Query: 362 VQA---------AELLAEMAISSAQRRMRAAKKVVRKK-LTSGPALPGKLADCTAQDLNR 411 + +++ EM A+ + R K+V R+K ++P KL+DC + + Sbjct: 501 KRGYKEQSGRVLEKIVGEM---HARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDV 557 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 ELF+VEGDSA G+AK AR+ +QA++P++GKILN + S ++L+++E I +G Sbjct: 558 AELFIVEGDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAG 617 Query: 472 PDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID 530 + D+ Q RY K+ ++ DAD DG HI LL LF ++ R L++HGHVY A+PPL+RI Sbjct: 618 SGASFDIEQARYNKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIA 677 Query: 531 LG----KEVYYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPMQLRETTLDPNTR 584 L E Y +++E G L +L +K+ N +QR+KGLGEM+ QL +TT+DP TR Sbjct: 678 LTGARKGEYIYTYSDDELAGKLAELDKKRIGYNEDIQRYKGLGEMDADQLADTTMDPRTR 737 Query: 585 RLVQLTIDD 593 L ++ ++D Sbjct: 738 MLRRIRMED 746 Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 98/229 (42%), Positives = 136/229 (59%), Gaps = 28/229 (12%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y A ++ VL GL+ VR+RPGMY TT H E+IDNSVDEALAG + V LH+ Sbjct: 11 YGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGVCNHIIVTLHS 70 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S+EV D+GRG+PVDI P+ + VE++L +LHAG KF N +Y SGGLHGVG SVVNA Sbjct: 71 DGSVEVADNGRGIPVDIEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSSVVNA 130 Query: 122 LSKRVEVNVRRDGQVYNIAFENGE------------------------KVQDLQVVGTCG 157 LS R++V V RDG+ ++++F G + +L+++G Sbjct: 131 LSSRLDVEVDRDGKTHHMSFHQGHPGVYTDVDSEHPSPDAPFKRTRKNRPTELEIIGKVS 190 Query: 158 KRNTGTSVHFWPD-ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 + TGT + +W D E F D+ FS +L ++ + L PG++IT DE Sbjct: 191 PKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDE 239 >UniRef50_B6EUG7 DNA gyrase subunit B (Fragment) n=6 Tax=Actinomycetales RepID=B6EUG7_RHOER Length = 446 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 155/455 (34%), Positives = 218/455 (47%), Gaps = 81/455 (17%) Query: 105 YQFSGGLHGVGISVVNALSKRVEVNVRRDG----QVYNIAFENGEKVQDLQVVGTCGKRN 160 Y SGGLHGVGISVVNALS RVE +++R G Q +N+A + ++V R Sbjct: 1 YAVSGGLHGVGISVVNALSTRVEADIKRAGKHWIQNFNMAVPD-------ELVEGSNARG 53 Query: 161 TGTSVHFWPDETFFDSPRFS---VSR-----------LTHVLKAKAVL------------ 194 TGT++ FWPD F++ F +SR LT LK + V Sbjct: 54 TGTAIRFWPDPEIFETTEFDFDVISRRLQEMAFLNKGLTITLKDERVTEEELELEALAEG 113 Query: 195 ----------------CPGVEITFKDEINNTEQ--------------------RWCYQDG 218 G E + E+ + E + Y DG Sbjct: 114 GDTAESIDGDSFDDEALEGTEASETKEVTDAESGEDIADDIAPSKPKKLEKKVSYHYPDG 173 Query: 219 LNDYLAEAVNGLPTLPEKPFIGNFA-GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 L DY+ + +N + +G A GD V+ A+ W G + ++ N I T +GG Sbjct: 174 LIDYV-KYLNKSKSEIHPTIVGFEAKGDDHEVEIAMQW-NSGYKESVHTFANTINTHEGG 231 Query: 278 THVNGLRQGLLDAMREFC-EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 TH G R L M + E++ + + L+ +D + A V+S ++ DPQF GQTK + Sbjct: 232 THEEGFRAALTTLMNRYAREHKLLKEKDPNLTGDDCREGLAAVVSARVGDPQFEGQTKTK 291 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTS 393 L + + FV V + W + N A+ + A++S+ R+ A K V RK T Sbjct: 292 LGNTELKGFVQRAVNEHLAFWFDANPAEAKAIVNKAVASSHARVAARKARDLVRRKSATD 351 Query: 394 GPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD 453 LPGKLADC +D N ELF+VEGDSAGGSAKQ RD YQAI+PL+GKILN + D Sbjct: 352 MGGLPGKLADCRTKDPNAAELFIVEGDSAGGSAKQGRDSMYQAILPLRGKILNVEKARLD 411 Query: 454 EVLASQEVHDISVAIGIDPDSD-DLSQLRYGKICI 487 VL + EV I A+G + + D+ +LRY KI + Sbjct: 412 RVLKNAEVQAIITALGTGINEEFDIEKLRYHKIVL 446 >UniRef50_A3Q8K7 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Mycobacterium RepID=A3Q8K7_MYCSJ Length = 677 Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 198/676 (29%), Positives = 300/676 (44%), Gaps = 71/676 (10%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDE-ALAGHA-KRVDVILHA 61 +Y A I L ++ R RP + N +E+IDN+++E A H V + LH Sbjct: 2 SYTAADITELDDVQHTRLRPAVNLGLDVLNTALRELIDNAIEEVADPSHGGSAVTITLHD 61 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFS--GGLHGVGISVV 119 D S+ V DDGRG+PVD P G + L AGGKFS S GL+G+G + Sbjct: 62 DGSVGVADDGRGLPVDSDPVNGKNGIVKTLGTARAGGKFSAHTDAASTGAGLNGIGAAAA 121 Query: 120 NALSKRVEVNVRRDGQVYNIAFENG------------------EKVQDLQVVGTCGKRNT 161 +S R +V VRR G+ Y +F G Q L+ G Sbjct: 122 VFISARTDVTVRRAGKTYLQSFGRGYPGVFEGKDFDPDAPFTRADTQKLRGTGNRKPDVH 181 Query: 162 GTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE-----------INNTE 210 GT+V D + + + A A + PGV ++ DE + Sbjct: 182 GTTVRILFDPAVVPDSQIDIGEVLLRAHAAARMSPGVHLSVIDEGWPGDEVAPALLEPFT 241 Query: 211 QRWCYQDGLNDYLAEAVNGLPTLPEKPFI---GNFA---GDTEAVDWALLWLPEGGELLT 264 W D L D + A G P + + G + G T W+L P + Sbjct: 242 GPWG-TDTLLDLMCTAA-GTPAPGVRAVVEGRGEYTTGRGPTP-FRWSLTAGPAEPATVA 298 Query: 265 ESYVNLIPTMQGGTHVNGLRQGLLDAMRE-FCEYRNI-LPRGVK-LSAEDIWDRCAYVLS 321 ++ N + T GG+H+ +GL +A+ + R++ L +G + A+D A + Sbjct: 299 -AFCNTVRTPGGGSHLTAAMKGLSEALADRASRMRDLGLAKGEEGPEAQDFAAVTALAVD 357 Query: 322 VKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ--NVQAAELLAEMAISSA--- 376 + D + Q K +SSR ++ V + +W N A L ++A+ SA Sbjct: 358 TRAPDVAWDSQAKTAVSSRSLNVAMAPDVARSVTIWAANPANGDAVSLWTKLALESARAR 417 Query: 377 ------QRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR---TELFLVEGDSAGGSAK 427 + R RAA K K L + +LP KL +++ R ELFL EGDSA G+ K Sbjct: 418 RSAEGAKARSRAASKA--KGLGTNLSLPPKL--LPSRETGRGSGAELFLCEGDSALGTIK 473 Query: 428 QARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID-PDSDDLSQLRYGKIC 486 ARD +QA PLKGK N + + ++ A E I +G D+ D RY +I Sbjct: 474 AARDATFQAAFPLKGKPPNVYGFALNKARAKDEFDSIERILGCGVRDNCDPELCRYDRIL 533 Query: 487 ILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEG 546 +DAD DG +I + L ++F+ +R LV+ G VYV LPPL+ + G + Y E E++ Sbjct: 534 FASDADPDGGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKDGTQRIYCQDESERDA 593 Query: 547 VLEQLK-RKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDM 605 + ++K K K VQR KGLGEM+ T LDP R ++++ DD +++ + Sbjct: 594 AVAKMKATSKRKVEVQRNKGLGEMDADDFWNTVLDPQRRTVIRVHPDDSENK-----LHH 648 Query: 606 LLAKKRSEDRRNWLQE 621 L E RR W+ + Sbjct: 649 TLFGGPPEGRRTWMAD 664 >UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO Length = 1417 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 168/637 (26%), Positives = 293/637 (45%), Gaps = 68/637 (10%) Query: 13 LTGLEPVRRRPG--MYTDTTRP-NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVID 69 L G E VR+R M +D R H E++ NS+D G + VI H D S +ID Sbjct: 7 LKGSERVRKRVSVMMGSDDIRGCQHTLFEIVSNSIDRHRKGFGNYIKVIKHEDLSYTIID 66 Query: 70 DGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVN 129 G+P+D + +E +L L L+AG + + G++G+G+ S+ +EV Sbjct: 67 HADGLPMDWNDKENAYNWDLALKVLYAGDNYDANSTAL--GINGLGLCSSQYASEYMEVV 124 Query: 130 VRRDGQVYNIAFENG---------------------EKVQDLQVVGTCGKRNTGTSVHFW 168 +D + Y + + G E+ Q + +V + + TGT +H+ Sbjct: 125 SYKDDKKYTVKCKKGRPIDKNTGEFICEDDDTLFAREQGQRVLLVESNSENKTGTYIHYK 184 Query: 169 PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVN 228 PD F + S+ + L +A++ ++I DE + Y+ G+ DY+ + ++ Sbjct: 185 PDLEVFTNIDISIDWINDKLDKQAMVNKELKIEVYDEKEDKLYTHYYESGIKDYI-KTIS 243 Query: 229 GLPTLPEKPFIGNFAGDTEAVD---------WALLWLPEGGELLTESYVNLIPTMQGGTH 279 + + + VD AL++ E +L E Y N +QGG+ Sbjct: 244 DDNNFSDVIYFTEKGKGRDKVDKPEYDYNYEIALVFNNEINKL--EYYHNSSELLQGGST 301 Query: 280 VNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLS 338 + + A+ E+ + N+ + K+ DI D V+S +A QTK + Sbjct: 302 ADAINLAFTYAINEYAKDNNLFNKNESKIKFTDIQDSLICVISSFSTMTSYANQTKLSID 361 Query: 339 SRQCAAFVSGVVKDAFILWLNQN-VQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 ++ F + +K+ L+ +N ++A ++ ++ I+ RA K + KL L Sbjct: 362 NKFIKDFTNQSLKEKLKLYFIENKLEAGRIVNQILINK-----RANDKAEKTKLNIKKTL 416 Query: 398 PGK--------LADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWE 449 K CT+ D + TEL+L EG SA GS R+ ++QA + GK+L+ + Sbjct: 417 QTKSNFDDTDNFYACTSNDKSITELYLAEGSSAQGSIVMGRNSKFQACYHVGGKMLSLLK 476 Query: 450 VSSDEVLASQEVHDISVAIGI----------DPDSDDLSQLRYGKICILADADSDGLHIA 499 +++ ++ V ++ +G D ++ D + L Y KI + D D+D I Sbjct: 477 ADFEKIFKNKVVRELFQYLGCGIEIKSKHNKDLNTFDENNLNYSKIILATDQDTDAFQIR 536 Query: 500 TLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKR---KKG 556 L+ + L+KHG+VY+A PLY I +VY+A TEEEK +LE+L + K Sbjct: 537 CLMLTAIYRLAPTLIKHGYVYIAESPLYEITTADKVYHAYTEEEKITILEELSKKGIKYD 596 Query: 557 KPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 KP +R KGLGE++ + ET ++P TR++ ++T+ D Sbjct: 597 KP--ERNKGLGEVDSDIIAETMMNPKTRKITRVTVQD 631 >UniRef50_B3LD45 DNA gyrase subunit b, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LD45_PLAKH Length = 992 Score = 205 bits (521), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 154/556 (27%), Positives = 247/556 (44%), Gaps = 109/556 (19%) Query: 96 AGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGT 155 A K +++ Y+FS GLHGVG+SV NALS ++V V R G++++I E G+ V L V Sbjct: 265 ASQKSASQMYRFSSGLHGVGLSVANALSSFMKVKVFRGGKIHSIELEKGKVVTPLSV-RE 323 Query: 156 CGKRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDE--------- 205 C GT +H+ PD F ++ R + + + + A L + F DE Sbjct: 324 CPVSKRGTQIHYKPDHDIFKNTIRHNAELIKNRIHQLAYLNDRLTFYFYDERSAKKVPTS 383 Query: 206 ----------------------INNTEQR----------WCYQDGLNDYLAEAVNGLPTL 233 +N T + ++ GLN+Y+ +L Sbjct: 384 VHLAKGNEADEVDKREDKTTDAVNTTVEHNNLDFYPYEVIKHEGGLNEYMESLTKNKASL 443 Query: 234 ---PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 K + +D + W S+VN + T GGTHV+ ++ + Sbjct: 444 FKDSNKIISISCHQKNVHIDLRIKWTQGQYHEHIVSFVNNVNTTDGGTHVDAMKYAISRC 503 Query: 291 MREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV 350 + + V + E I + +LS+KM +P+F GQTK +L S F+ ++ Sbjct: 504 VNFNIKKNEATKNFVNIPGEYIREGMTAILSIKMNNPEFEGQTKTKLGSH----FLKPIL 559 Query: 351 KDAFILWLNQ------NVQAAELLAEMAISSAQRRMRAAKKVVRKKLTS--GPALPGKLA 402 + A L++ N+ L + ++ +AA+ ++R K LPGKL Sbjct: 560 ESAIFEKLSEIFDFEPNLLNTIYLKALQAKASDEEAKAARDLIRSKNNQYYSTILPGKLV 619 Query: 403 DCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDE-VLASQEV 461 DC + D+NR E+F+VEGDSA GSAKQAR+RE QAI+PLKGKILN ++ +++ + + E+ Sbjct: 620 DCISDDINRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSEL 679 Query: 462 HDISVAIGIDPDSDDL-------------------------------------------- 477 + AIG+ D+ Sbjct: 680 KSLITAIGLSISCDNSKMAKGKNMLNNKKKDIKKKYDLKCSKKENVQVNNAMVNKKKNTL 739 Query: 478 --SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEV 535 + LRYGKI I+ DAD DG HI LL + + ++++G+V+VA PPLY++ + Sbjct: 740 FDTPLRYGKIIIMTDADVDGEHIRILLLTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFF 799 Query: 536 YYALTEEEKEGVLEQL 551 + KE V++Q Sbjct: 800 DNTI----KETVMKQF 811 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 44/99 (44%), Positives = 61/99 (61%), Gaps = 3/99 (3%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVILHA 61 Y+A I +L GLE VR+RPGMY T L Q E+IDNSVDE + +++H Sbjct: 111 YDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNEIKIVIHE 170 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 D+S+ + D+GRG+P DIH + A+E +L LH+G KF Sbjct: 171 DESVTIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKF 209 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 28/34 (82%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 +QRFKGLGEM QL TT+DP+ R+L+++T++D Sbjct: 928 IQRFKGLGEMMADQLWSTTMDPSVRKLIRVTVND 961 >UniRef50_A5K8Q8 DNA gyrase subunit b, putative n=1 Tax=Plasmodium vivax RepID=A5K8Q8_PLAVI Length = 936 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 156/538 (28%), Positives = 243/538 (45%), Gaps = 97/538 (18%) Query: 105 YQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTS 164 Y+FS GLHGVG+SV NALS ++V V R G++++I E G+ V L V C GT Sbjct: 228 YRFSSGLHGVGLSVANALSSFMKVKVFRRGKIHSIELEKGKVVTPLSVR-DCPVSKRGTQ 286 Query: 165 VHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDE------------------ 205 +H+ PD T F ++ R + + + + A L + F DE Sbjct: 287 IHYRPDPTIFKNTIRHNAEMIRNRIHQLAYLNDRLSFYFYDERAAKKAAAEAENAANAAD 346 Query: 206 -------INNTEQR----------WCYQDGLNDYLAEAVNGLPTL---PEKPFIGNFAGD 245 NT + ++ GL++Y+ +L K Sbjct: 347 LADVADHAGNTAEHNNLDFYPYEVIKHEGGLDEYMESLTKNKASLFKDSNKVISITCHHK 406 Query: 246 TEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRG- 304 +D L W S+VN + T GGTHV+ ++ + + F +N R Sbjct: 407 NVHIDLRLKWTQGEYHEHIISFVNNVNTTDGGTHVDAMKYAISRCV-NFNIKKNEATRNF 465 Query: 305 VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV--KDAFILWLNQNV 362 V + E I + +LS+KM +P+F GQTK +L S + + K + I N+ Sbjct: 466 VNIPGEYIREGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFEKLSEIFDFEPNL 525 Query: 363 QAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA--LPGKLADCTAQDLNRTELFLVEGD 420 L + ++ +AA+ ++R K A LPGKL DC + D+NR E+F+VEGD Sbjct: 526 LNTIYLKALQAKASDEEAKAARDLIRSKNNQCYATILPGKLVDCISDDINRNEIFIVEGD 585 Query: 421 SAGGSAKQARDREYQAIMPLKGKILNTWEVSSDE-VLASQEVHDISVAIGIDPDSDDL-- 477 SA GSAKQAR+RE QAI+PLKGKILN ++ +++ + + E+ + AIG+ ++ Sbjct: 586 SAAGSAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITAIGLSVSCENSKI 645 Query: 478 --------------------------------------------SQLRYGKICILADADS 493 + LRYGKI I+ DAD Sbjct: 646 AKGKSTINSKKKDLKKKYDLRSGKKENAQVNNALVSKKKNPLFDTPLRYGKIIIMTDADV 705 Query: 494 DGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQL 551 DG HI LL + + ++++G+V+VA PPLY++ + ++ T KE V++Q Sbjct: 706 DGEHIRILLLTFLYRFQKNIIQNGNVFVACPPLYKVTYNR--FFDAT--IKETVMKQF 759 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVILHA 61 Y+A I +L GLE VR+RPGMY T L Q E+IDNSVDE + +++H Sbjct: 53 YDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNEIKIVIHQ 112 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN--KNYQFSGGLHGVGIS 117 D+S+ + D+GRG+P D+H + A+E +L LH+G KF + + Q GG G+S Sbjct: 113 DESVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFVDDEADAQLEGGSSVGGLS 170 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 26/34 (76%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 +QRFKGLGEM QL TT+DP R+L+++T+ D Sbjct: 872 IQRFKGLGEMMADQLWSTTMDPRVRKLIRVTVSD 905 >UniRef50_A6N697 DNA gyrase subunit B (Fragment) n=2 Tax=uncultured bacterium RepID=A6N697_9BACT Length = 440 Score = 201 bits (511), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 149/444 (33%), Positives = 219/444 (49%), Gaps = 33/444 (7%) Query: 88 ELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQ-VYNIAFENGEK 146 E+I+ LHAGGKF + Y +SGGLHGVG+SVV AL+ R+E V R+ + + IA+E G+ Sbjct: 1 EVIMTVLHAGGKFDGEVYDYSGGLHGVGVSVVCALASRLEAQVWRETEGSFTIAYEQGKL 60 Query: 147 VQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 206 VQ L+ GT + FWPD F + ++KA L PG+ + D Sbjct: 61 VQPLRKRPGSKAHPHGTRIKFWPDPEIFGDAVVDFDAVLERCRSKAYLIPGLRVDVIDHR 120 Query: 207 NNTEQRWCY--QDGLNDYLAEAVNGLPTLPEKPFI----GNFA------GD--------- 245 + + Y ++GL D L N P KP I G + GD Sbjct: 121 LDPPVKHTYTSRNGLVDLLGHLANN-PL--HKPIIIEGEGTYEETVQVLGDDGIRAQNME 177 Query: 246 -TEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNIL-PR 303 T ++ AL+W G E + VN + T +GGTH+ GL Q L + + E + + Sbjct: 178 RTGRLELALVWT-GGYETQFQLAVNQVTTPRGGTHLTGLNQALSRVVVKAAEGSRVKKAK 236 Query: 304 GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQ 363 + +D+ + V+ +++ +PQF GQ KE L + Q V +V W + Sbjct: 237 DPSPNKDDVMEGLCLVMHLQIPEPQFNGQAKEELGTPQAHQLVYQIVARELAKWFETAPR 296 Query: 364 A---AELLAEMAISSAQRRMRAAKKVVRKK-LTSGPALPGKLADCTAQDLNRTELFLVEG 419 L MA + A+ R ++ + RKK ALP KL+D +EL +VEG Sbjct: 297 THVRVVLEKVMAAARARDAARRSRDMARKKDRNQVLALPAKLSDSYRHYPEESELLIVEG 356 Query: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD-DLS 478 DSA G AK RD+ +QA++P++GKILN S+ + ++ EV I A+G+ P D Sbjct: 357 DSAAGPAKAGRDQRFQAVLPIRGKILNAARASAHNLASNAEVTAIFSALGLQPGPKCDPE 416 Query: 479 QLRYGKICILADADSDGLHIATLL 502 Q RY ++ I+ DAD DG HI TLL Sbjct: 417 QRRYTRVVIMTDADVDGSHIRTLL 440 >UniRef50_Q6UGM9 DNA gyrase B subunit (Fragment) n=1 Tax=Fusobacterium necrophorum subsp. necrophorum RepID=Q6UGM9_9FUSO Length = 403 Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 140/403 (34%), Positives = 207/403 (51%), Gaps = 10/403 (2%) Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCG-KRN 160 N NY+ SGGLHGVGISVVNALS+ EV V+R+G VY + G+ V+D++++ T Sbjct: 2 NDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGET 61 Query: 161 TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD--G 218 TGT V F PD F++ F L H LK A L G+EI D N ++ +Q G Sbjct: 62 TGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQSEGG 121 Query: 219 LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGT 278 ++D+L E TL K + VD A + E++ + N I +G Sbjct: 122 ISDFLKEVTRENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSEVIY-FFCNNIQYYRGRL 180 Query: 279 HVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDR-CAYVLSVKMQDPQFAGQTKER 336 + + + E I +G K++ + + + K + GQTK + Sbjct: 181 SCDWISNLFNKGLLMILEKAGIFEGKGWKITRRRTFGKELGLLFRSKFHNRNLEGQTKTK 240 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTS 393 L + + V+ V+ ++L N +L+ E +SS + R RA + V+RK + Sbjct: 241 LGNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAVLRKSVLE 300 Query: 394 GPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD 453 +LPGKLADC+++ E+FLVEGDSAGGSAKQ RDR +QAI+PLKGKILN + Sbjct: 301 VGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLH 360 Query: 454 EVLASQEVHDISVAIGIDPDSDDL-SQLRYGKICILADADSDG 495 + L S E+ + A G + + L ++ GKI ++ DAD DG Sbjct: 361 KALESDEIRAMVTAFGTNIGEESLIGKIEIGKIILMTDADVDG 403 >UniRef50_UPI0001976865 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Bacillus subtilis subsp. subtilis str. NCIB 3610 RepID=UPI0001976865 Length = 638 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 167/624 (26%), Positives = 290/624 (46%), Gaps = 46/624 (7%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLG-QEVIDNSVDEALAGHAKRVDVIL 59 MT T N D I+ L E R + ++ + + G +E++ N DE + + + + Sbjct: 1 MTTT-NQDKIKRLDDREKSREKIAIWYGSADNYYHGLKEILANGTDEVINNFDEGIVTLE 59 Query: 60 HAD--QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 D Q++ V D GRG+P+D +GV EL+ L A K+ Q + G +GVG + Sbjct: 60 LFDDLQTVRVTDTGRGIPID-GETDGVKNYELLFRTLFASTKYETSE-QTTTGTNGVGAT 117 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENG-EKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 V+N S + DG + + FENG E VQDL R+ GT + F D + Sbjct: 118 VLNFTSLFFHIESYYDGYKHALKFENGGELVQDLTKEKISEDRH-GTVITFKLDPEVYPV 176 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 + + +++ A+ +++ F I+N E+ + + + +Y E + T P Sbjct: 177 VTYDKDVVREIVRRFAIGSHKIKLIF---IHNGEEETFHYESVEEYFEELIGSTTTSPVI 233 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 + + L + + ESY+NL GG+ +G+ G+ ++ Sbjct: 234 TAPESLYEEDGERTQIKLTFSTTTDPIQESYLNLTYLSDGGSFNDGVITGIKTFCNKYAR 293 Query: 297 YRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTK--------ERLSSRQCAAFVS 347 + P+G+ + EDI ++VL +F QTK +L+ R + Sbjct: 294 ENKLFPKGINSFTTEDIESSVSFVLVALSNKVEFKNQTKLSTDKKLYRKLAQRHTTQLLE 353 Query: 348 GVV---KDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKV--VRKKLTSGPALPGKLA 402 + F ++N ++ + + + Q + + ++KV + K+ + L Sbjct: 354 VFQIENEKGFKKFVNHLLEVQKHNTQSQKAKQQLKKKLSEKVDGIGNKVAN-------LV 406 Query: 403 DCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVH 462 DC + +E+F+ EG SA GS ARD YQA PL+GKILN + + +Q + Sbjct: 407 DCKKHGKD-SEIFIAEGQSALGSIVLARDAVYQAAYPLRGKILNCLKADYTTIFKNQIIT 465 Query: 463 DISVAIGI---------DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRAL 513 D+ +G D D+ +++ LRYGKI I D DSDG IA L+ + + L Sbjct: 466 DLIKVLGCGIQTDKKNKDLDTFNINNLRYGKIIIATDQDSDGAQIACLIITMIYRLMPKL 525 Query: 514 VKHGHVYVALPPLYRIDLGKE-VYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPM 572 ++ G+VY+A PLY I L + + Y +E EK+ + L KGK + R KGLGE++ + Sbjct: 526 IEEGYVYIAQTPLYEIKLEDDSMIYFYSESEKDQKINTL---KGKYTIARCKGLGELDAV 582 Query: 573 QLRETTLDPNTRRLVQLTIDDEDD 596 + ET ++ TR L+++T++D ++ Sbjct: 583 TMAETAMNEETRNLIKVTVEDAEN 606 >UniRef50_C3IT50 DNA gyrase subunit B n=3 Tax=Bacillus thuringiensis RepID=C3IT50_BACTU Length = 726 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 185/677 (27%), Positives = 301/677 (44%), Gaps = 100/677 (14%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDV 57 ++Q Y ++I+ L G E VRRRP ++ H E++ NSVDE AG ++D+ Sbjct: 4 LSQNYGNNSIDSLEGAERVRRRPAAVLGSSGIEGARHGVTEIVGNSVDEGTAGFGSKLDI 63 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF----------------- 100 D S+ + D GRG+P+ + +G+ L+ ++AGGK+ Sbjct: 64 NYFKDGSISIRDYGRGVPMGYNENKGISNWFLVFNEMYAGGKYKDYQEELRAIKDWSTFN 123 Query: 101 -SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFE---------NGEKVQD- 149 ++ NY FS GL+G+G + S+ E DG + F NG +V Sbjct: 124 PTDYNYLFSIGLNGLGAASTQYTSEFFEAISITDGIATKMEFRGGYPILKDANGNEVHAI 183 Query: 150 ------LQVVGTCGKR----------NTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAV 193 L+ G K GT +H+ PD F ++ + V ++ A Sbjct: 184 IGEERLLEEHGIVLKEYVAETYETEEENGTYIHWKPDIRVFSDVDITLGWIKDVCESVAY 243 Query: 194 LCPGVEITFKDEINNTEQRWCYQDG----LNDYLAEA--VN-GLPTLPEKPFI--GNFAG 244 + G+++ DE +T YQ G LN L E VN P++ E I GN Sbjct: 244 IS-GLDVNLYDEATDTMHE--YQSGTISDLNLILNEKNLVNEDSPSVYEDNDITHGNVKQ 300 Query: 245 DTE------AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 + E D +++ E G+ T + N I M+GG + + D + Sbjct: 301 NNENFIYVFKADVSVVRTREKGK--TVCFHNAIK-MKGGAQYRAVDSAVADFVIGLGN-- 355 Query: 299 NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS----RQCAAFVSGVVKDAF 354 +GVK+ D + V+ + GQTK+ + R + ++ + Sbjct: 356 ---TKGVKVVERDFEGKLGVVVKSYSNVASYKGQTKDEVDDNFIYRDLKTIIYRLINTEY 412 Query: 355 -------ILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQ 407 I ++++ ++ AEL + + + +R KK R + LP KL + Sbjct: 413 HKGNKDIIEFVDKVLEEAEL--RITLQEQAKMLREVKKTSRTRKLPEKFLPSKL--FKEK 468 Query: 408 DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVA 467 + ++EL++VEGDSA S K ARD +QAI ++GK+ N + S +++ S+E+ DI Sbjct: 469 IVKKSELWIVEGDSAKTSVKNARDPLFQAIYAVRGKVTNALKASFKKLMESEEIRDIFSL 528 Query: 468 IG-------IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 +G +D + D+ R+ KI I DAD DG I LL +F ++K G +Y Sbjct: 529 LGTGMDVELLDDNEFDIDACRFEKIIIGTDADEDGYQIRVLLFVVFWVLAPEIIKRGMLY 588 Query: 521 VALPPLYRIDLGK-EVYYALTEEEKEGVLEQLKRKKGK-PNVQRFKGLGEMNPMQLRETT 578 + P + I L E+ YA+ E +K E+ K G+ V+R+KGLGE+N L TT Sbjct: 589 IGETPKFGIKLSNGEMVYAINEVDK---AEREKEYAGQIVKVERYKGLGEVNADVLGFTT 645 Query: 579 LDPNTRRLVQLTIDDED 595 L P TR L+Q+ +D D Sbjct: 646 LAPETRNLIQIKLDPAD 662 >UniRef50_A3SXB5 DNA topoisomerase IV subunit B n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3SXB5_9RHOB Length = 308 Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 102/243 (41%), Positives = 145/243 (59%), Gaps = 9/243 (3%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y+A +I+VL +E VR RPGMY D +H+ E+IDNS+DEA+AGHA +++ LH Sbjct: 15 YDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDEAVAGHATWIELELHE 74 Query: 62 DQSLEVIDDGRGMPVDIHPEE-GVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 + + V D+GRG+P D HP++ A+E+I C L+AGGKFS +Y+ SGGLHGVG SVVN Sbjct: 75 NGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGLHGVGSSVVN 134 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS + V V R+ +++ + F G L+ +G R GT+V F PD F + Sbjct: 135 ALSDHLRVEVARNRELFAMEFSRGIPQGKLEKIGAAPNRR-GTAVTFHPDAEIFGPLKLK 193 Query: 181 VSRLTHVLKAKAVLCPGVEITFK----DEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 +RL + ++KA L GVEI +K D E + + GL+DYL E + G T P Sbjct: 194 PARLFTMARSKAYLFSGVEIRWKCGQQDGDTPQEATFHFPGGLSDYLNETLKGSTTTPSI 253 Query: 237 PFI 239 P + Sbjct: 254 PLV 256 >UniRef50_Q8I528 Term=DNA gyrase subunit B;evidence=inferred from direct assay n=3 Tax=Plasmodium RepID=Q8I528_PLAF7 Length = 1006 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 106/337 (31%), Positives = 166/337 (49%), Gaps = 52/337 (15%) Query: 249 VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLS 308 +D + WL S+VN + T GGTHV+ L+ + + + ++ V + Sbjct: 499 IDLRMKWLSNQYNENIISFVNNVNTTDGGTHVDALKYAVSRCVNYNIKKNEMIKNFVNIP 558 Query: 309 AEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV--KDAFILWLNQNVQAAE 366 E I + +LSVKM +P+F GQTK +L S + + V+ K + I N+ ++ Sbjct: 559 GEYIREGLTAILSVKMNNPEFEGQTKTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSI 618 Query: 367 LLAEMAISSAQRRMRAAKKVVRKKLT--SGPALPGKLADCTAQDLNRTELFLVEGDSAGG 424 + + +AA+ ++R K S LPGKL DC + D++R E+F+VEGDSA G Sbjct: 619 YFKALQAKLSDEEAKAARDLIRSKNNQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAG 678 Query: 425 SAKQARDREYQAIMPLKGKILNTWEVSSDE-VLASQEVHDISVAIGID------------ 471 SAKQAR+RE QAI+PLKGKILN ++ +++ + + E+ + A+G++ Sbjct: 679 SAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITALGLNVNYDNKNLKNNN 738 Query: 472 -----------PDSDDL------------------------SQLRYGKICILADADSDGL 496 DL + LRYGK+ I+ DAD DG Sbjct: 739 ILSNNKKGKNSKKKSDLKNSRFESTQNNNNILNKKKDILVDNTLRYGKVIIMTDADVDGE 798 Query: 497 HIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 HI LL + + ++++G+VYVA PPLY+I K Sbjct: 799 HIRILLLTFLYRFQKEIIENGNVYVACPPLYKITYNK 835 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 109/227 (48%), Gaps = 55/227 (24%) Query: 5 YNADA--IEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVIL 59 YN DA I +L GLE VR+RPGMY T L Q E+IDNSVDE + V++ Sbjct: 121 YNYDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNTIKVVI 180 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF------------------- 100 H D S+ + D+GRG+P D+H + A+E +L LH+G KF Sbjct: 181 HKDDSVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNT 240 Query: 101 ------------------------------SNKNYQFSGGLHGVGISVVNALSKRVEVNV 130 S + Y++S GLHGVG+SV NALS ++V V Sbjct: 241 NTSEKNNRDNISNNNNNNNNNKRTKKNSKESAQKYKYSSGLHGVGLSVANALSSFMKVKV 300 Query: 131 RRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 R+ ++Y+I E G+ ++L + C GT +H+ PD + F S Sbjct: 301 FRNNKIYSIELEKGKVTKELTITN-CPINKRGTQIHYKPDSSIFKSS 346 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 3/65 (4%) Query: 557 KPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRR 616 K +QRFKGLGEM QL TT+DP R+L+++T++D R + ++ L+ + S+ R+ Sbjct: 938 KYEIQRFKGLGEMMADQLWNTTMDPTVRKLIRVTVNDA--IRANDLIFSLMGED-SKLRK 994 Query: 617 NWLQE 621 N++ E Sbjct: 995 NFILE 999 >UniRef50_B4V0A2 DNA gyrase subunit B n=1 Tax=Streptomyces sp. Mg1 RepID=B4V0A2_9ACTO Length = 387 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 126/390 (32%), Positives = 188/390 (48%), Gaps = 27/390 (6%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVILHA 61 Y+A I+VL G E VR+RPGMY +T L Q EV D +V+E LAG A VD+ L Sbjct: 8 YDASHIQVLEGWEAVRKRPGMYVGSTSERGLRQMVFEVADRAVNEVLAGRAASVDITLMP 67 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D + V DDG G+P+D G P +E +L ++ A G + + + G GVG +VVNA Sbjct: 68 DGGVCVADDGPGVPIDETEGAGGPGLEALLTQMQA-GVGTGGRHDVTLGFCGVGPAVVNA 126 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS R+ VRR+G ++ + G L VGT +GT++ FWPD F + FS Sbjct: 127 LSCRMTAEVRREGVLWVQEYARGVAATPLTEVGTA--TGSGTTIAFWPDADIFGATEFSF 184 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEINNTEQRWC---YQDGLNDYL------AEAVNGLPT 232 L + A L G+EI+ D E R + G D + A A + T Sbjct: 185 DGLEERFREVAFLNQGLEISLTDLRRPDESRSVRLRFPGGTRDLVDFLDGHAAASTPVDT 244 Query: 233 LP---EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 + E P +G ++ A W GE + +S+ N PT+ GGTH G R G+ Sbjct: 245 IAFECEDPRMGGV------MEVAFRWCSCPGERV-QSFANSRPTV-GGTHAVGFRDGMTA 296 Query: 290 AMREFCEYRNIL-PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 A+ + + +L P A+ I + V+SVK+ P+F G T+ L + + V Sbjct: 297 AVTAYAREQGLLTPMDPGFDADRIGEGLTAVVSVKLDRPEFEGSTRGVLGNSEVRDCVGQ 356 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQR 378 V+D WL ++ + A + ++ A+R Sbjct: 357 AVQDHLGRWLKEDRERAAAVIGQSVQGARR 386 >UniRef50_C0DAN0 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAN0_9CLOT Length = 422 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 132/407 (32%), Positives = 185/407 (45%), Gaps = 90/407 (22%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y A+ I++L GLE VR+RP MY T +HL E++DN+VDEALAGH V V L+ Sbjct: 22 YRAEQIQILEGLEAVRKRPAMYIGNTSSAGLHHLVCEIVDNAVDEALAGHCSAVSVTLNR 81 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S+ + D+GRG+PV I + G+ A++++ LHAGGKF + NY+ SGGLHGVG SVVNA Sbjct: 82 DGSVTITDNGRGIPVGIQKKTGLSALQVVFTVLHAGGKFDSSNYKVSGGLHGVGASVVNA 141 Query: 122 LSKRVEVNVRRDG----QVYNIAFENGEKVQDLQVVGTC--------------------- 156 LS + V VRRDG Q Y+ +G ++ V G Sbjct: 142 LSLWLRVEVRRDGGTWKQSYSRGVPDGAVTKEEAVRGCATGPLARQDDPIPLTRQDDPVP 201 Query: 157 GKRN-----------------TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVE 199 RN +GT+V F PD F P F L ++ A L G+ Sbjct: 202 SARNEAPFSPARQGALDTVSVSGTTVTFLPDPEIFRDPVFQYEVLKKRMRETAFLTKGLS 261 Query: 200 ITFKD--------------------------EINNTEQ-------RWCYQDGLNDYLAEA 226 +T D E +N Q + + GL D+ Sbjct: 262 LTLTDLRADCKHGSNTAATPDATTADAPKSPESSNLPQPTLPRQDHFLCEKGLEDF---- 317 Query: 227 VNGL-----PTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVN 281 VN L P E G +GD + V++A+ G + S+VN I T +GG+HV Sbjct: 318 VNWLNRDASPLYSEIICGGADSGDIQ-VEFAIQHT-AGYDQRLYSFVNNISTPEGGSHVT 375 Query: 282 GLRQGLLDAMREFCEYRNILPRGV-KLSAEDIWDRCAYVLSVKMQDP 327 G L+ A+ +L L E++ + V+SV+MQDP Sbjct: 376 GFHSALVRALNHCARNLKLLKESAPPLCREELTEGLTAVISVRMQDP 422 >UniRef50_B2ZYK3 Type IIA topoisomerase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYK3_9CAUD Length = 882 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 143/523 (27%), Positives = 232/523 (44%), Gaps = 35/523 (6%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y++ +IE VR P MY D + +E++DN DE +A V + A Sbjct: 9 YDSTSIETQRFPHNVRASPAMYIGGVDAYGLWTVTKELLDNGADEFMAQRNDAVFLHFDA 68 Query: 62 DQSLEVIDDGRGMPVDIHP----------EEGVPAVELILCRLHAGGKFSNKNYQFSGGL 111 D S V D G G+P + + +P ++ + LH GK+ ++ Y S G Sbjct: 69 DGSYWVWDHGHGIPQGVKTFKLNLNGKVVTQKMPTMQAVFGELHTSGKYRSEAYAVSIGS 128 Query: 112 HGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQ-----VVGTCGKRNTGTSVH 166 HGVG NA ++ +V +G+ +I F+ GE Q ++ + T GT +H Sbjct: 129 HGVGSKGTNATAEYFDVWTLYEGRWSSIKFKKGELAQPVKECSAPKLPTGKPLKKGTLIH 188 Query: 167 FWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEA 226 F PD + F F S + + PG+ I + + + + G +Y+ Sbjct: 189 FKPDASIFSVKSFPPSMAVEWATVMSYMNPGLSIHLSSK--KGAKTYLSKKGPQEYIEHR 246 Query: 227 VNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 + L T E+ F + D L + G + N + QGG HV+ + Sbjct: 247 LAALKTEGERQM---FVHHDDLSDVVLAFTNYDGCDI-RGMTNSVTNGQGGKHVDSVTGA 302 Query: 287 LLDAMREFCEYRNILPRG-VK----LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQ 341 + ++ + + + + G VK D+ + +++ K+ QF+ Q K RL+ + Sbjct: 303 VYAGLKPWIKTKKVKEDGKVKVVPAFRETDLKEGLVGLVNAKLHKAQFSSQDKARLTDNR 362 Query: 342 CAAFVSGVVKDAFILWLNQNVQAAELLAEMA--ISSAQRRMRAAKKVVRK-KLTSGPALP 398 + F+ + +N A+ L + A ++ + + +KK LP Sbjct: 363 LGKDYEEAITKKFVAFFKENKALAQRLCDRATKLNELKTKFTMSKKAAATLNAVKRNGLP 422 Query: 399 GKLADCTA-QDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLA 457 K A + ++ ELFLVEGDSAGGS K AR YQA++PLKGK+LN + + + L Sbjct: 423 AKYAAFNSDTKVHDRELFLVEGDSAGGSLKDAR-LPYQAVLPLKGKVLNALKDNKGKALE 481 Query: 458 SQEVHDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLHIA 499 S E+ +I AIG D +D LS+L GKI LAD D DG +A Sbjct: 482 SDEIINILAAIGYDTKAADPLSKLTVGKIICLADPDPDGPFVA 524 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 477 LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYV-ALPPLYRIDLGKEV 535 L+ R+ + + S HI +LL LF K+ L G VYV A P Y I + V Sbjct: 681 LTVPRHHHFLLPSGVVSSNCHINSLLLGLFYKYLPDLFDKGMVYVSAAPEFYSIYKDQLV 740 Query: 536 YYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 T + V +LK+ K + + KG GE + +R DP TRRL+++ Sbjct: 741 ----TGDTLSAVQVKLKKLKAPTSTAIHHLKGWGEASENLMRVLAADPATRRLIKIKAIS 796 Query: 594 EDDQ 597 DD+ Sbjct: 797 HDDK 800 >UniRef50_Q9HGH7 DNA topoisomerase 2 (Fragment) n=1 Tax=Pichia kudriavzevii RepID=Q9HGH7_ISSOR Length = 804 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 166/650 (25%), Positives = 286/650 (44%), Gaps = 95/650 (14%) Query: 38 EVIDNSVDEALAGHA-KRVDVILHADQS-LEVIDDGRGMPVDIHPEEGVPAVELILCRLH 95 E++ N+ D + + KR+DVI++ +++ + V +DG+G+P++IH +E + ELI L Sbjct: 21 EILVNAADNKIRDPSMKRIDVIINEEENVISVKNDGKGIPIEIHDKENIYIPELIFGNLL 80 Query: 96 AGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVV 153 + + + +GG +G G + N S V+ G+ Y + N + Sbjct: 81 TSSNYDDDQKKVTGGRNGYGAKLCNIFSTEFTVHTADMSHGKEYTQVWRNNMSEVGKPKI 140 Query: 154 GTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTH----VLKAKAV-LCP---GVEITFKDE 205 K+N T + F PD + +F + +L H V K + LC G+ +T E Sbjct: 141 LNFKKKNEFTEIIFKPDLS-----KFGMEKLDHDILGVFKRRVYDLCGSVRGIRVTLNGE 195 Query: 206 ---INNTEQRW-CYQDGLNDYLAEAVNGLPTLPEK-------PFIGNFAGDTEAVD---- 250 INN +Q Y +N E P +P K P G +TE Sbjct: 196 LLKINNFKQYVELYVKAINKSKEER----PHIPVKIETEDGTPLNGESEANTETSSTPEP 251 Query: 251 -----------------WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 W + + G S+VN I T GGTHV+ + L + E Sbjct: 252 SLNENLPTIVHEIINDRWEIAFCISDGSFNQVSFVNSIATTLGGTHVDDVANMLCGKITE 311 Query: 294 FCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK-- 351 + +N + + I + ++ +++P F QTKE L++ Q + F ++ Sbjct: 312 QIKRKN---KKAIIKPFQIKSKMFLFINCLVENPAFTFQTKEYLTT-QLSKFGGKRLELP 367 Query: 352 DAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411 + FI + N + + ++ ++A + ++ + ++T P L T + Sbjct: 368 EKFIKKI-LNTGIIDEVLDIVQANADKALKKTDGAKKSRITGYPKLEDANKAGTREGYKC 426 Query: 412 TELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 T L L EGDSA A Q R Y PL+GK+LN E S+D+++ + + I + Sbjct: 427 T-LILTEGDSAKSLAVQGLAVVGRNYYGCFPLRGKVLNVREASTDQIMKNGAIQAIKQIM 485 Query: 469 GIDPDS----DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA-L 523 G+ DD+ LRYG+I I+AD D DG HI LL F L++ + + + Sbjct: 486 GLQHKKHYGPDDIKSLRYGRIMIMADQDHDGSHIKGLLINFLEASFPGLLEIPNFLIEFI 545 Query: 524 PPLYRIDL------GKEV-YYALTEEEK----EGVLEQLKRKKGKPNVQRFKGLGEMNPM 572 P+ +I + K + +Y++ E E+ EG K+K +KGLG + Sbjct: 546 TPIVKITIMSGPNRRKTIPFYSMPEYEQWRETEGSTCSYKQK-------YYKGLGTSSAQ 598 Query: 573 QLRE--TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 ++RE T LD + +R L DED + +D+ +KK+++DR+ WL+ Sbjct: 599 EMREYFTQLDKHLKRFDALR--DED----KSSIDLAFSKKKADDRKEWLR 642 >UniRef50_A7XYG8 GyrB (Fragment) n=6 Tax=Chlamydia trachomatis RepID=A7XYG8_CHLTR Length = 393 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 79/163 (48%), Positives = 110/163 (67%), Gaps = 2/163 (1%) Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVL 456 LPGKL DC +D + E+++VEGDSAGGSAKQ RDR +QAI+P++GKILN + +V Sbjct: 5 LPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKVF 64 Query: 457 ASQEVHDISVAI--GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV 514 +QE+ I A+ GI D+ +LS+LRY +I I+ DAD DG HI TLL F +H AL+ Sbjct: 65 QNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHMSALI 124 Query: 515 KHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGK 557 ++ VY+A PPLYR+ K+ Y L+E+E +G L L K+ + Sbjct: 125 ENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQ 167 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 4/75 (5%) Query: 536 YYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDED 595 Y T +E L+ L RK +QR+KGLGEMN QL +TT++P R LV++++ D Sbjct: 301 YVCYTLKEVIDYLKGLGRKG--IEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSLKDAV 358 Query: 596 DQRTDAMMDMLLAKK 610 + D + ML+ ++ Sbjct: 359 E--ADHIFTMLMGEE 371 >UniRef50_B3SFQ4 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SFQ4_TRIAD Length = 303 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 82/178 (46%), Positives = 116/178 (65%), Gaps = 4/178 (2%) Query: 364 AAELLAEMAISSAQRRM-RAAKKVVRKKLTSG-PALPGKLADCTAQDLNRTELFLVEGDS 421 A ++ MA S+ R R A+ + RK++ + LPGKLA+C +D ++ELFLVEGDS Sbjct: 6 AKTIIGRMAESAIAREAARKARDLSRKQIGNQISTLPGKLANCQEKDPAKSELFLVEGDS 65 Query: 422 AGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI--DPDSDDLSQ 479 AGGSAKQ RDR+ QAI+PLKGKILN D++L S E+ + A+G+ + DL++ Sbjct: 66 AGGSAKQGRDRKIQAILPLKGKILNVERARFDKMLNSAEIGTLITALGVVLEDKEFDLTK 125 Query: 480 LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYY 537 LRY KI I+ DAD DG HI TLL F ++ L++ G++Y+A PPLY++ G+ Y Sbjct: 126 LRYHKIIIMTDADVDGAHIRTLLLTFFFRYMPGLIEKGYLYIAQPPLYKVKRGQSDTY 183 >UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_9CHLO Length = 1459 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 170/626 (27%), Positives = 279/626 (44%), Gaps = 68/626 (10%) Query: 23 PGMYTDTTRPNHLGQEVIDNSVDEALAGHAK---RVDVILHADQSLEVIDDGRGMPVDIH 79 PG+Y + E++ N+ D + + RVD+ A + V +DG G+PV++H Sbjct: 104 PGLY-------KIFDEILVNATDNKVRDPSMVTLRVDIDQEAG-CIRVYNDGNGIPVEMH 155 Query: 80 PEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG---QV 136 EEGV ELI L +++ + +GG +G G + N S V DG + Sbjct: 156 KEEGVYVPELIFGHLLTSSNYNDNEKKVTGGRNGYGAKLANIFSTEFVVET-CDGSRERR 214 Query: 137 YNIAFEN--GEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRL---THVLKAK 191 Y F+N GEK + VV C + T + F P D +F+++ L T L K Sbjct: 215 YRQVFKNNMGEKCE--PVVTKCKPTDNWTCITFKP-----DLAKFNMTELEDDTVALMCK 267 Query: 192 AVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVD- 250 V I ++ +R + G +DY+ + G P+ E V+ Sbjct: 268 RVYDAAGNIGKNTKVFLNGERLKVK-GFSDYVDLYLEGRENAPKV---------YEKVND 317 Query: 251 -WAL-LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLS 308 W + + + + G S+VN I TM+GGTHVN + + + E + + + +K Sbjct: 318 RWEVCVTISDSGNFQQVSFVNGICTMKGGTHVNQVADEVAGKLLEKIKKKEKSCKNLK-- 375 Query: 309 AEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELL 368 A + + ++ +++P F QTKE L++R + F S ++ N E + Sbjct: 376 AAHVKNHLWVFVNALIENPAFDSQTKETLNTR-ASNFGSKYEASDKVIKQMMNSGIVEQI 434 Query: 369 AEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSA-----G 423 A + M+ + +LT P L D ++ L L EGDSA Sbjct: 435 LSWASFKQSKEMKKSDGKKATRLTGIPKL-DDANDAGGRNSEHCTLILTEGDSAKALAVS 493 Query: 424 GSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLR 481 G + RDR + PL+GK+LN + S D+++ + E++ I +G+ + + LR Sbjct: 494 GLSVVGRDR--YGVFPLRGKLLNVRDASHDQIMNNAEINHIKQILGLRHGTTYESAKSLR 551 Query: 482 YGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKE--VYYA 538 YG I I+ D D DG HI LL HF +L+K G + + P+ + GK+ V+Y Sbjct: 552 YGHIMIMTDQDHDGSHIKGLLINFLHAHFPSLLKIPGFLVEFITPIIKATKGKQSKVFYT 611 Query: 539 LTEEE--KEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE--TTLDPNTRRLVQLTIDDE 594 L E + KE E+ +G N++ +KGLG + +E LD + + T D Sbjct: 612 LPEYDNWKEHA-EETGTGRGW-NIKYYKGLGTSTAKEAKEYFAALDHHKKTFAWTTDGDG 669 Query: 595 DDQRTDAMMDMLLAKKRSEDRRNWLQ 620 + ++DM +KKR EDR+ WL Sbjct: 670 N------LIDMAFSKKRVEDRKAWLN 689 >UniRef50_A9CRV4 DNA gyrase subunit B (Fragment) n=2 Tax=Bradyrhizobium RepID=A9CRV4_9BRAD Length = 272 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 85/169 (50%), Positives = 110/169 (65%), Gaps = 3/169 (1%) Query: 38 EVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 EV+DN++DEALAGHA RV V L+AD S+ V DDGRG+PVDIH EGV A E+I+ +LHAG Sbjct: 2 EVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIHKGEGVSAAEVIMTQLHAG 61 Query: 98 GKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC- 156 GKF +Y+ SGGLHGVG+SVVNALS ++ + + D + + I F +G+ V L+VVG Sbjct: 62 GKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWGDDKEHYIEFAHGDAVAPLKVVGDAP 121 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 GKR GT V F F + + + L H L+ A L GV I D Sbjct: 122 GKR--GTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVHIVLSDH 168 >UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP10_ENTDI Length = 1351 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 142/574 (24%), Positives = 260/574 (45%), Gaps = 48/574 (8%) Query: 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALS 123 S+ V ++G+G+P++IH +E + ELI L + + + + +GG +G G + N S Sbjct: 97 SITVYNNGKGIPIEIHKKENIYIPELIFGHLLTSSNYKDDDKKVTGGRNGYGAKLANIFS 156 Query: 124 KRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-------DS 176 + + ++Y ++N ++ + + K T V F PD F D+ Sbjct: 157 TKFSIETCDGKKIYKQTWKNNMSDKEEPEIESVKKVEEYTKVTFTPDYKRFQMKGMEDDA 216 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 R + R + A PG I IN ++ C+++ +Y V P + EK Sbjct: 217 RRLLIRRAYDI----AGCNPGKRIW----ING--KKVCFKN-FAEYARMYVGDEPIVSEK 265 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 AG+ W + GE + S+VN I T GGTHV+ + + + E + Sbjct: 266 ------AGER----WDICVCASKGEPMQISFVNSINTSHGGTHVDYVTGLMTKYLAE--K 313 Query: 297 YRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 + + +G ++ I + ++ +++P F QTKE L ++ + D F Sbjct: 314 MKKLNKKGAEIKPFQIKNHLFVFVNSLIENPAFDSQTKETLKTQVNKFGSKPTLSDKFFK 373 Query: 357 WLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFL 416 L + ++LA AI + + + ++T P L T + N L L Sbjct: 374 ELGKLSVVDDILA-WAIKKGEMDLNKSGGKKTARITGIPKLDDANKAGTKEG-NLCTLIL 431 Query: 417 VEGDSAGG---SAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD 473 EGDSA S R+Y + PL+GK LN E++ +V +QE +I+ +G+ Sbjct: 432 TEGDSAKTLAVSGLSVVGRDYYGVFPLRGKPLNAREIAPSKVKENQEFENIAKIMGLRYG 491 Query: 474 S--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA-LPPLYRID 530 +++LRYG + I+AD D DG HI LL F + +L+K + V + P+ ++ Sbjct: 492 KVYSSINELRYGSVMIMADQDFDGSHIKGLLINYFHTFWPSLLKIDNFLVEFITPIVKVK 551 Query: 531 LGKE--VYYALTE--EEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 GK+ ++ L + E K+ +++ + KK + ++ +KGLG + D +T ++ Sbjct: 552 RGKQEISFFTLPQFNEWKDARIQEGQLKKWE--IKYYKGLGTSKDSDAKAYFSDLDTHKI 609 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 D +D ++D+ +KR++DR+ WL+ Sbjct: 610 KFAY----DGASSDEVIDLAFNRKRADDRKEWLK 639 >UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K4K4_SCHJY Length = 1499 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 148/618 (23%), Positives = 274/618 (44%), Gaps = 51/618 (8%) Query: 23 PGMYTDTTRPNHLGQEVIDNSVDEAL---AGHAKRVDVILHADQSLEVIDDGRGMPVDIH 79 PG+Y + E+I N+ D + + +V++ A+ + V ++G+G+PV+IH Sbjct: 120 PGLY-------KIFDEIIVNAADNKVRDPTMNTLKVEIDPEAN-VISVYNNGKGIPVEIH 171 Query: 80 PEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR---RDGQV 136 +EG+ ELI L + + + +GG +G G + N S V R + Sbjct: 172 EKEGIYIPELIFGHLLTSSNYDDNQKKVTGGRNGYGAKLCNIFSHEFTVETADKLRMKKY 231 Query: 137 YNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS---VSRLTHVLKAKAV 193 EN K + +VV + + T + F PD F + VS + + A Sbjct: 232 KQTWTENMSKKSEPKVVD-MKRADEYTKITFKPDLAKFGMTKLDDDLVSVVKRRVYDMAG 290 Query: 194 LCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWAL 253 P +++ +E N + Y+ V+ L + D W + Sbjct: 291 TIPDIKVFLNNERINIK-------NFRKYVELFVSSLRNRTDSTKPPTILYDRPNERWEV 343 Query: 254 LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIW 313 + G+ S+VN I T +GGTHVN + ++ ++ +N + L I Sbjct: 344 AYTLSDGQFKNISFVNSIATTRGGTHVNYVADEIVKRVQAEFSKKN---KHAALKPFQIK 400 Query: 314 DRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI 373 + ++ ++ +P F QTKE L+++ A + D F L ++ + + +E+A Sbjct: 401 NNLWLFINCQIVNPSFDSQTKETLTTKPSAFGSKCDLSDTFFKQLIKS-EIIAVCSELAK 459 Query: 374 SSAQRRMRAAKKVVRKKLTSGPALPGKLADCT---AQDLNRTELFLVEGDSAGG---SAK 427 + A ++M R ++T P KL+D ++ + L L EGDSA S Sbjct: 460 AKADQQMSKTDGKSRSRITGLP----KLSDANKAGTRESKKCTLILTEGDSAKTLVVSGL 515 Query: 428 QARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQ--LRYGKI 485 R+Y + PL+GK+LN E S ++++ ++E+ I +G+ + S LRYG + Sbjct: 516 GVVGRDYYGVYPLRGKLLNVREASYNQIINNKEIQAIKKILGLAHNKKYTSTDGLRYGHL 575 Query: 486 CILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEK 544 I+ D D DG HI L+ + +L+ G + + P+ R G+E+ T E Sbjct: 576 MIMTDQDHDGSHIKGLIINYLESTYPSLLHLEGFLIEFITPIVRCRKGREIISFFTLPEF 635 Query: 545 EGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE--TTLDPNTRRLVQLTIDDEDDQRTDAM 602 + E +G +++ +KGLG + ++E + LD + ++ + D E+D + Sbjct: 636 DYWKENNNNGRGW-SIKYYKGLGTSDAKDMKEYFSALDRHIKQFHTIQ-DGEND-----L 688 Query: 603 MDMLLAKKRSEDRRNWLQ 620 +DM +KK+++ R+ WL+ Sbjct: 689 IDMAFSKKKADVRKEWLR 706 >UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces pombe RepID=TOP2_SCHPO Length = 1485 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 147/616 (23%), Positives = 274/616 (44%), Gaps = 49/616 (7%) Query: 23 PGMYTDTTRPNHLGQEVIDNSVDEALAG-HAKRVDVILHADQS-LEVIDDGRGMPVDIHP 80 PG+Y + E+I N+ D + + + V L + + + + ++G+G+P++IH Sbjct: 124 PGLY-------KIFDEIIVNAADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHD 176 Query: 81 EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKR--VEVNVRRDGQVYN 138 +E + ELI L + + + +GG +G G + N S VE + + Y Sbjct: 177 KEKIYIPELIFGNLLTSSNYDDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERMKKYK 236 Query: 139 IAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGV 198 + + + V+ + K + T + F PD F + + ++K + G Sbjct: 237 QTWYDNMSRKSEPVITSLKKPDEYTKITFKPDLAKFGMDKID-DDMVSIIKRRIYDMAGT 295 Query: 199 EITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP--FIGNFAGDTEAVDWALLWL 256 K +NN +R G Y+ + E+P I D W + + Sbjct: 296 VRETKVYLNN--ERISIS-GFKKYVEMYLASDTKPDEEPPRVIYEHVNDR----WDVAFA 348 Query: 257 PEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRC 316 G+ S+VN I T++GGTHVN + ++DA+ E + N + + A I + Sbjct: 349 VSDGQFKQVSFVNNISTIRGGTHVNYVANKIVDAIDEVVKKEN---KKAPVKAFQIKNYV 405 Query: 317 AYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA 376 ++ ++++P F QTKE L+++ A + D F+ + ++ E+L + A + A Sbjct: 406 QVFVNCQIENPSFDSQTKETLTTKVSAFGSQCTLSDKFLKAIKKSSVVEEVL-KFATAKA 464 Query: 377 QRRMRAAKKVVRKKLTSGPALPGKLADCT---AQDLNRTELFLVEGDSAGG---SAKQAR 430 +++ +R ++T KL D ++ ++ L L EGDSA S Sbjct: 465 DQQLSKGDGGLRSRITG----LTKLEDANKAGTKESHKCVLILTEGDSAKSLAVSGLSVV 520 Query: 431 DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICIL 488 R+Y + PL+GK+LN E S ++L ++E+ I +G D+ LRYG + I+ Sbjct: 521 GRDYYGVFPLRGKLLNVREASHSQILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIM 580 Query: 489 ADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGV 547 D D DG HI L+ + +L++ G + + P+ + G +V T E E Sbjct: 581 TDQDHDGSHIKGLIINYLESSYPSLLQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEYW 640 Query: 548 LEQLKRKKGKPNVQRFKGLG--EMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDA-MMD 604 E +G ++ +KGLG + + M+ + LD + + + Q DA +++ Sbjct: 641 KEANNNGRGW-KIKYYKGLGTSDHDDMKSYFSDLDRHMKYFHAM-------QEKDAELIE 692 Query: 605 MLLAKKRSEDRRNWLQ 620 M AKK+++ R+ WL+ Sbjct: 693 MAFAKKKADVRKEWLR 708 >UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIW3_ENTBH Length = 1159 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 148/620 (23%), Positives = 269/620 (43%), Gaps = 54/620 (8%) Query: 16 LEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMP 75 L+ V+ PG+Y + E++ N+ D + + S+ + +DG G+P Sbjct: 48 LKNVKFAPGLY-------KIFDEILVNAADNKQRDPRMTYIKVYINEMSVSIENDGNGIP 100 Query: 76 VDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQ 135 ++IH +E V ELI L +++ + +GG +G G + N S EV G+ Sbjct: 101 IEIHQKEQVYVPELIFGHLLTSSNYNDNEKKVTGGRNGYGAKLCNIFSVHFEVETVSKGR 160 Query: 136 VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLC 195 Y+ F+N ++ + ++ T + F PD F F ++ K +C Sbjct: 161 KYSQVFKNNMEIIGKPTISAYSGKDY-TKITFVPDFKRFGMSLFDSDIISIFYKRVYDMC 219 Query: 196 PGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVD--WAL 253 V+ NTE Y LND +N L + + T+ ++ W + Sbjct: 220 ATVK--------NTE---IY---LNDK-KLMINNLKEYAQLYLSHDVKLVTKKINDRWEI 264 Query: 254 LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIW 313 + + S+VN I T +GGTHVN + L+D + + R+ + + L ++ Sbjct: 265 ACASTDEQFMQVSFVNSICTSKGGTHVNHVLDQLMDPLISAVKKRD---KTLVLKPLNVK 321 Query: 314 DRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI 373 + ++ +++P F QTKE L+ + A G + ++ +++ ++ Sbjct: 322 NNLFLFINALIENPIFDSQTKENLTLKSSAF---GSKCQPIDDIIKDIIKNTDIIDKIIT 378 Query: 374 SSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTE---LFLVEGDSA-----GGS 425 S ++ KK K T +P KL D R+ L L EGDSA G Sbjct: 379 FSKIKQAVLLKKTDGVKTTKIVGIP-KLEDANFAGTKRSSECTLILTEGDSAKTLAVAGL 437 Query: 426 AKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID--PDSDDLSQLRYG 483 + RD+ + PL+GK+LN E S+ +++ + E+ I +G+ D + LRYG Sbjct: 438 SVVGRDK--YGVFPLRGKLLNVREASNKQIMDNAEISAIKKILGLQHGKTYTDTTSLRYG 495 Query: 484 KICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEE 542 I I+ D D DG HI L+ F +L+K G + + P+ R KE Y T Sbjct: 496 HIMIMTDQDFDGSHIKGLIINFLDYFFPSLLKILGFLQEFITPIVRATKKKEKYDFFTIP 555 Query: 543 EKEGVLEQLKRKKGKP-NVQRFKGLGEMNPMQLRE--TTLDPNTRRLVQLTIDDEDDQRT 599 E E +Q+++ K ++ +KGLG ++ L + + + + ++D + Sbjct: 556 EYEKFKQQIEQIKDSGWVIKYYKGLGTSTTDDAKQYFNNLKLHVKTFIPVELEDRE---- 611 Query: 600 DAMMDMLLAKKRSEDRRNWL 619 ++D+ KK+++DR+ W+ Sbjct: 612 --LIDLAFNKKKADDRKEWI 629 >UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA Length = 1462 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 155/588 (26%), Positives = 259/588 (44%), Gaps = 68/588 (11%) Query: 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALS 123 ++ V ++G G+PV+IH EE V ELI L + + + +GG +G G + N S Sbjct: 103 TVSVYNNGDGVPVEIHQEEKVYVPELIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFS 162 Query: 124 KR--VEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 +E R + Y F N + V+ C T V F P D +F + Sbjct: 163 TEFIIETADGRRLKKYKQVFSNNMGTKCEPVITKCKASENWTKVTFKP-----DLEKFKM 217 Query: 182 SRLTH---VLKAKAVL----CPGVEITFKDEINNTEQRW-CYQDGLNDYL--AEAVNGLP 231 + L L K VL C G T K E+N T R+ ++D + +L AE +P Sbjct: 218 AYLEEDVVALMKKRVLDMAGCFGK--TVKVELNGTLIRFKSFRDYADLFLKCAEKSKPMP 275 Query: 232 TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHV----NGLRQGL 287 P I GD W + G+ S+VN I T++GGTHV N + + Sbjct: 276 L----PRIHAKVGDR----WEICISLSDGQFQQVSFVNSIATIKGGTHVDYITNQITTYI 327 Query: 288 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 ++ + + + N+ VK +W +V S+ + +P F QTKE L++RQ + Sbjct: 328 MNKVNKKKKDANVKAHTVK---NHLW---VFVNSL-IDNPAFDSQTKETLTTRQASFGSK 380 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQ 407 V ++ + ++V+ + ++ + + ++ + KK K +L C A+ Sbjct: 381 CDVPESML----KDVEKSGIVDTLLSWADFKQSKDLKKTDGTKTQ-------RLRGCKAE 429 Query: 408 DLN--------RTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDEVL 456 D N + L L EGDSA A R++ + PL+GK+LN E SS +++ Sbjct: 430 DANEAGGRNSEKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASSKQIM 489 Query: 457 ASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV 514 ++E+ +I +G+ + + ++ LRYG + I+AD D DG HI LL + +L+ Sbjct: 490 DNEEIQNIKKILGLQQNKEYTNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPSLL 549 Query: 515 KHGHVYVAL--PPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPM 572 K V P + K + + E E E+L ++ +KGLG P Sbjct: 550 KVPSFLVEFTTPVIRASHPNKTITSFYSMPEYEAWKERLGNSATSWKIKYYKGLGTSTPQ 609 Query: 573 QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 + RE D R DDE D +++ +KK++E R+ W++ Sbjct: 610 EGREYFSDLGRHR-KDFIWDDELDGNA---IELAFSKKKAEGRKIWMR 653 >UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KAQ6_9ALVE Length = 1579 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 159/646 (24%), Positives = 278/646 (43%), Gaps = 79/646 (12%) Query: 23 PGMYTDTTRPNHLGQEVIDNSVD--EALAGHAKRVDVILHADQS-LEVIDDGRGMPVDIH 79 PG+Y + E++ N+ D + H + V + A+ ++V ++G+G+P+ IH Sbjct: 65 PGLY-------KIFDEILVNAADNLQRDPKHMNTIKVDIDAENGFIKVYNNGKGLPIQIH 117 Query: 80 PEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVY 137 E V EL+ L + +K + +GG +G G + N SK+ + R ++Y Sbjct: 118 KEHHVYVPELVFGHLLTSDNYDDKEKKVTGGRNGYGAKLSNIFSKKFLITTADRTRKKLY 177 Query: 138 NIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG 197 FE + + V+ K + T V FWPD F + ++ + + G Sbjct: 178 KQQFEKSMQKKKEPVITDYDKEDF-TCVQFWPDLEKFGMTHLDAD-IVSLMSKRVIDVAG 235 Query: 198 VEITFKDEINNTEQR---WCYQDGLNDYLAEAVNGLPTLPEKPFIGNF---AGDTEAVD- 250 + K ++ +R ++D YL P + EK N G + D Sbjct: 236 TSASKKCKVYLNGKRVPISSFKDYAELYLTGEWVDAPKIYEKVARANVYVSCGHVQVSDR 295 Query: 251 WALLWLPE-----GGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV 305 W +L GG+ S+ N I T++GGTHVN + + +++A+ + + +N G+ Sbjct: 296 WEVLVTLSDPAGGGGQFQQVSFANSINTVKGGTHVNHVAEQIVNAVLKKAQTKN--KGGM 353 Query: 306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR------QCA--------AFVSGVVK 351 +L + + ++ +++P F QTKE L+ + +C SG+V Sbjct: 354 ELKPFQVKNHMWLFVNALIENPTFDSQTKETLTLKVAKFGSKCVLSEGTMKKVLSSGIV- 412 Query: 352 DAFILWLNQNVQAAELLAEMAI--SSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 409 D + W Q A L +++ + + Q R+ KL G+ +D Sbjct: 413 DQVVNWAKFK-QTATLQSKIKVGGTGGQTRIFGV-----PKLEDANDAGGRYSD------ 460 Query: 410 NRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 466 R L L EGDSA A R+ + PL+GK+LN E S + + ++E+ I Sbjct: 461 -RCTLILTEGDSAKALAVAGLGVIGRDKYGVFPLRGKVLNVREASYKQTVDNKEIQAILK 519 Query: 467 AIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVAL 523 IG++P D + LRYG I ++ D D DG HI LL L + L++ G + + Sbjct: 520 IIGLEPRKAYDGVKGLRYGSIMVMTDQDLDGSHIKGLLINLVHHWWPGLLQTRGFMKEFV 579 Query: 524 PPLYRIDLGKE--VYYALTEEEKEGVLEQLKRKK--GKP-NVQRFKGLGEMNPMQLRETT 578 P+ + G+ ++ LTE E+ KR GK ++ +KGLG + ++ Sbjct: 580 TPIVKCVKGRRELSFFTLTE------YEEWKRNNNDGKGWKIKYYKGLGTSTSKEAQQ-Y 632 Query: 579 LDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD 624 ++ + D DD +DM KKR++DR+ W+ D Sbjct: 633 FSQISKHSLSFDYRDGDDGEA---IDMAFNKKRADDRKEWINGYAD 675 >UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2K9_PHATR Length = 1165 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 164/644 (25%), Positives = 274/644 (42%), Gaps = 94/644 (14%) Query: 38 EVIDNSVDEALAGH---AKRVDVIL-----HADQSLEVIDDGRGMPVDIHPEEGVPAVEL 89 E++ N+ D L H R+DVI+ + D + V +DG+G+PV +H +EG+ E+ Sbjct: 57 EILVNAADN-LQRHPDSCTRIDVIIDPGSDNRDPFIRVRNDGKGIPVQVHQKEGMYVPEM 115 Query: 90 ILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV---RRDGQVYNIAFENGEK 146 + L G F + + +GG HG G + N SK V R+ + N Sbjct: 116 LFGHLLTGSNFDDNEKRLTGGRHGFGAKLTNIFSKSFTVETLDSRKRLKYRQTWSSNMTN 175 Query: 147 VQDLQVVGTCGKRNTGTSVHFWPDETFF--DSPRFSVSRLTHVLKAKAVL----CP---- 196 ++V T V F PD D+ S+S+ + L + VL C Sbjct: 176 ASSPEIVEVPADATDYTCVSFVPDVARLTNDASALSISKEDYALMCRRVLDVAGCSAGRL 235 Query: 197 -----GVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDW 251 GV++T + + + QD L +A+N W Sbjct: 236 RVTLNGVDVTM-GSFPDYARLYRKQDSL-PVCFDAINS--------------------RW 273 Query: 252 AL-LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAE 310 + + L E G S+VN + T +GGTHVN + Q ++ ++E E + P V+++++ Sbjct: 274 TVGVGLSETGSFEMVSFVNGMATSRGGTHVNSILQQVIKKIQEKIEKTD--PELVQMASQ 331 Query: 311 DIWDRCAYV-LSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQ-AAELL 368 + R +V ++ +++P F Q KE L+S S + ++FI + Q+ + + Sbjct: 332 GVIRRHLFVSVAALIENPTFDSQMKECLTSSPADFGSSFSLSESFIKSVLQSEEEGGPGI 391 Query: 369 AEMAISSAQRRMRA------AKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSA 422 E +AQ R +A K +++L S P L T + L L EGDSA Sbjct: 392 VEEIRRAAQSRQQATLLKVIGGKTSKRQLLSIPKLEDAHHAGTKSG-SECTLILTEGDSA 450 Query: 423 GGSAKQARD---REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS----- 474 A + R + PL+GK+LN E + ++ + EV + IG+D D Sbjct: 451 KALAVAGLEVIGRARYGVFPLRGKLLNVREAAVSQMAKNAEVTALCAIIGLDFDKTYETI 510 Query: 475 DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-------------HGHVYV 521 ++ +LRYGK+ ++ D D+DG HI L+ F + L+K + Sbjct: 511 EERRKLRYGKVMLMTDQDTDGSHIKGLVMNFFRYFWPNLLKPPVDLQVNDEDETPPFLSS 570 Query: 522 ALPPLYRID-----LGKEVYYALTEEEK-EGVLEQLKRKKGKPNVQRFKGLGEMNPMQLR 575 + PL + G +Y++ E +K G +E KK V+ +KGLG P + R Sbjct: 571 FVTPLLKASKKSSKTGTLSFYSMAEYKKWRGSIEAEDFKKW--TVKYYKGLGTSTPAEAR 628 Query: 576 ETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 E N L D D + ++DM+ +R+ DRR W+ Sbjct: 629 EYFSAFNDHFRPFLWNSDIDGE----LLDMVFDGERAADRRAWI 668 >UniRef50_B5H7D6 DNA gyrase subunit B n=2 Tax=Streptomyces RepID=B5H7D6_STRPR Length = 391 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 120/381 (31%), Positives = 175/381 (45%), Gaps = 24/381 (6%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVI 58 Y+A IEVL GLE VR+RPGM+ +T L Q EV+ +V+E +AG A V V Sbjct: 5 AHMYDATHIEVLEGLEVVRKRPGMWVGSTGERGLHQMVFEVVGRAVNENVAGRAGSVAVA 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH----AGGKFSNKNYQFSGGLHGV 114 L D + V DDG G+P + E P +E +L R+H AGG+ + GL Sbjct: 65 LMPDGEVRVTDDGPGVPAEAVGEAVGPCLEDMLTRIHAQQDAGGRRAIAVSPLGNGL--- 121 Query: 115 GISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF 174 G+ V NAL+ + VRRDG + + +G V G +G ++ F PD F Sbjct: 122 GLGVPNALASSLTAEVRRDGVRWVQVYASGVAVGPPTAAGPA--VGSGITLAFRPDAGIF 179 Query: 175 DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE---QRWCYQDGLNDY---LAEAVN 228 ++ S L + A L G++I+ DE + E +R+ G D+ L E Sbjct: 180 ETVECSFDVLAERFRELAFLNRGLDISLSDERSAGECRSERFHSPGGTRDFVLLLGEG-R 238 Query: 229 GLPTLPEKPFIGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 285 G L + IG D AV+ AL W + E +Y N PT +GGTH G R Sbjct: 239 GTGALVQTDVIGFEREDPRMAGAVEVALQWR-DSDEERVRTYANSRPTPEGGTHAEGFRD 297 Query: 286 GLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAA 344 G+ A+ + R +L L A+ I V+SVK+ P F G T L + + Sbjct: 298 GVAAAVNAYARQRRLLTSADADLGADRIGKGLTAVVSVKLDQPGFRGATCAELDNTEARF 357 Query: 345 FVSGVVKDAFILWLNQNVQAA 365 V V++ +WL ++ + A Sbjct: 358 GVEEAVREHLGIWLERHPEQA 378 >UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group RepID=TOP2_YEAST Length = 1428 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 162/683 (23%), Positives = 293/683 (42%), Gaps = 103/683 (15%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVD------------------EAL 48 +D + ++ LE + +RP Y + Q + D D E L Sbjct: 9 SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEIL 68 Query: 49 AGHA---------KRVDVILHADQ-SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 A KR+DV +HA++ ++EV +DG+G+P++IH +E + E+I L Sbjct: 69 VNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 128 Query: 99 KFSNKNYQFSGGLHGVGISVVNALS-----KRVEVNVRRDGQVYNIAFENGEKVQDLQVV 153 + + + +GG +G G + N S + ++NV GQ Y +EN + + Sbjct: 129 NYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNV---GQKYVQKWENNMSICHPPKI 185 Query: 154 GTCGKRNTGTSVHFWPDETFFDSPRF-----------------SVSRLTHVLKAKAVLCP 196 + K + T V F PD T F SV + L K++ Sbjct: 186 TSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDINGSVRDINVYLNGKSLKIR 245 Query: 197 GVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPT-LPEKPFIGNFAGDTEAVDWALLW 255 + + + + E++ +G + A + +PT L E+ I N W + + Sbjct: 246 NFKNYVELYLKSLEKKRQLDNGED---GAAKSDIPTILYER--INN--------RWEVAF 292 Query: 256 LPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDR 315 S+VN I T GGTHVN + D + + + + + I + Sbjct: 293 AVSDISFQQISFVNSIATTMGGTHVNYI----TDQIVKKISEILKKKKKKSVKSFQIKNN 348 Query: 316 CAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQA--AELLAEMAI 373 ++ +++P F QTKE+L++R F G + + ++N+ ++ A + E+A Sbjct: 349 MFIFINCLIENPAFTSQTKEQLTTR-VKDF--GSRCEIPLEYINKIMKTDLATRMFEIAD 405 Query: 374 SSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSA-----GGSAKQ 428 ++ + ++ + + ++T+ P L T + T L L EGDSA G A Sbjct: 406 ANEENALKKSDGTRKSRITNYPKLEDANKAGTKEGYKCT-LVLTEGDSALSLAVAGLAVV 464 Query: 429 ARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID--PDSDDLSQLRYGKIC 486 RD Y PL+GK+LN E S+D++L + E+ I +G+ +D LRYG + Sbjct: 465 GRD--YYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLM 522 Query: 487 ILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEV-----YYALT 540 I+ D D DG HI L+ F L+ G + + P+ ++ + K +Y + Sbjct: 523 IMTDQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMP 582 Query: 541 EEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE--TTLDPNTRRLVQLTIDDEDDQR 598 + EK + + K + +KGLG ++RE + LD + + L +D+D Sbjct: 583 DYEK---WREEESHKFTWKQKYYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGNDKD--- 636 Query: 599 TDAMMDMLLAKKRSEDRRNWLQE 621 +D+ +KK+++DR+ WL++ Sbjct: 637 ---YIDLAFSKKKADDRKEWLRQ 656 >UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae RepID=A5E7X7_LODEL Length = 1492 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 156/635 (24%), Positives = 277/635 (43%), Gaps = 66/635 (10%) Query: 23 PGMYTDTTRPNHLGQEVIDNSVDEALAGHA-KRVDVILHADQS-LEVIDDGRGMPVDIHP 80 PG+Y + E++ N+ D + + K + V + + + ++V++DG+G+PV+IH Sbjct: 129 PGLY-------KIFDEILVNAADNKIRDPSMKNIKVKIDPENNVIQVMNDGKGIPVEIHT 181 Query: 81 EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR--RDGQVYN 138 +E + ELI L + + + +GG +G G + N S + EV G++Y Sbjct: 182 KEKMYIPELIFGNLLTSSNYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYK 241 Query: 139 -IAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG 197 + +N KV ++ T + T + F PD F L+ + + LC Sbjct: 242 QVWTDNMTKVGKPKIT-TLKTKKEYTKITFMPDLQKFGMDSLDEDLLSVLRRRVYDLCGT 300 Query: 198 V---EITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPE-----KPFIGNFAGDTEAV 249 V I D+ + Y + +A+ PE KP + Sbjct: 301 VRNCNIYLNDKRLSVNSFKAYV----EMYVKAIRERSPEPEGDAESKPATTTIVHEVFND 356 Query: 250 DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSA 309 W + + G S+VN I T GGTHV + ++ + E R + + + Sbjct: 357 RWEVAFAVSDGNFNQVSFVNSIATTAGGTHVKYVSDQIITKLVETLSKREKGKKKLMIKP 416 Query: 310 EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL---WLNQNVQAAE 366 +++ D ++ +++P F QTKE+L+++ G K+ FI +N+ ++ Sbjct: 417 QEVRDNMFIFINSLIENPAFTSQTKEQLTTKPSQ--FGG--KEKFIATENLINRILKTGI 472 Query: 367 LLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCT---AQDLNRTELFLVEGDSAG 423 AI++A K KKL + L D +D + L L EG SA Sbjct: 473 ADKIRAIANANEDKALQKADGSKKLRIKNQV--NLVDANKAGTKDGLKCTLILTEGLSAL 530 Query: 424 GSAKQARD---REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS----DD 476 A R+Y PL+GK+LN E S+D+V + E++ + IG+ ++ Sbjct: 531 NLAVAGLTVVGRDYYGCFPLRGKLLNVREASADQVSKNIEINALKQIIGLQHKKVYTQEN 590 Query: 477 LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDL---- 531 + LRYG I I+ D D DG HI L+ F L+ G + + P+ ++ + Sbjct: 591 IKSLRYGHIMIMTDQDQDGSHIKGLIINFLETSFPGLLDIPGFLLQFITPIVKVTVNGRG 650 Query: 532 GKEV--YYALTEEE--KEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE--TTLDPNTRR 585 K+V +Y++ E E +EG + + + + +KGLG P++ RE T LD + +R Sbjct: 651 AKKVIPFYSMPEFEAWREGEGQNCRWTQ-----KYYKGLGTSTPLEAREYFTALDRHLKR 705 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 L +D + +D+ +KK+++DR+ WLQ Sbjct: 706 FHALQGEDA------SCIDLAFSKKKADDRKEWLQ 734 >UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermophila RepID=Q6PUA3_TETTH Length = 1662 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 144/592 (24%), Positives = 266/592 (44%), Gaps = 57/592 (9%) Query: 53 KRVDVIL-HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGL 111 KR+DVI+ + + +++DG+G+PV IH E + ELI L ++++ + GG Sbjct: 77 KRLDVIIDQKNNCISILNDGKGIPVQIHKEYNIYVPELIFGHLLTSSNYNDEEKKVVGGR 136 Query: 112 HGVGISVVNALSKR--VEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWP 169 +G G + N S + VE ++ + + + + Q + + + + T + F+P Sbjct: 137 NGFGAKLTNIFSTKFIVESADSKNKKKFQMTWTKNMSEQSEPQISSYTESDY-TKITFYP 195 Query: 170 DETFFDSPRFSVSRLTHVLKAK-----AVLCPGVEITFKDEINNTEQRWCYQDG-LNDYL 223 D F + ++K + V+ V+++ E + Y D L + Sbjct: 196 DLKKFHMKELE-KDIVDLMKKRVYDMAGVIGGSVKVSLNGERISISSFSDYCDFYLKNQG 254 Query: 224 AEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGL 283 AE + + + G T W ++ G+ S+VN I T +GGTHVN + Sbjct: 255 AEVIK----------VSDNKG-TNNQRWEVIASLSEGQFQQVSFVNSICTSKGGTHVNYI 303 Query: 284 RQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCA 343 + + + E + + + + + + ++ +++P F QTKE L+ RQ + Sbjct: 304 TDQITEKLMETLKKK---EKSLNIKQFQVKSHLWIFVNCLIENPSFDTQTKETLTLRQQS 360 Query: 344 AFVSGVVKDAFIL-WLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLA 402 + V + FI L N+ LL + A+ + + AK + KK + +P KL Sbjct: 361 FGSTCEVSEKFIKELLKSNIINHILLQ----ARAKEQAKMAKTLSAKKQSRLLGVP-KLE 415 Query: 403 DCTAQDLNRTE---LFLVEGDSAGG---SAKQARDREYQAIMPLKGKILNTWEVSSDEVL 456 D E L + EGDSA S + R+ + PLKGK+LN + +S ++ Sbjct: 416 DANDAGTRNAESCTLIITEGDSAKALAMSGIEVVGRDKFGVFPLKGKMLNVRDSTSKQIT 475 Query: 457 ASQEVHDISVAIG--IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV 514 + E+ +I +G ++ + D++ LRYG I I+AD D DG HI L + +L Sbjct: 476 ENLEIQNIIKVMGMKLNTNYDNVKSLRYGSIMIMADQDHDGSHIKGLFINFIQNFWPSLF 535 Query: 515 K-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGK-PN-----VQRFKGLG 567 + G + + P+ ++ G + + ++ KR K PN ++ +KGLG Sbjct: 536 QMDGFLKEFITPIVKVRKGNQSISFFS-------IQDFKRWKSTCPNQHLWKIKYYKGLG 588 Query: 568 EMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + +E + N + ++ + +DD+ DA +D+ KKR+EDR+ WL Sbjct: 589 TSTDQEAQEYFGNIN-KHVISFKYNGKDDE--DA-IDLAFNKKRAEDRKKWL 636 >UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A7ANB1_BABBO Length = 1437 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 169/660 (25%), Positives = 280/660 (42%), Gaps = 100/660 (15%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKR---------- 54 YN +A +L EPV PG+Y + E++ N+ D HA++ Sbjct: 42 YNQEAKRML--YEPVTFIPGLY-------KIFDEILVNAADV----HARQQSDPSLTRMT 88 Query: 55 -VDVILHADQ-SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH 112 + V +A ++ V +DG +PV+IH E V E+I L + +++ + +GG + Sbjct: 89 CIKVNFNATTGAITVFNDGEPIPVEIHKEHNVYVPEMIFGELLTSDNYDDEDGRITGGRN 148 Query: 113 GVGISVVNALSKRVEV---NVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWP 169 G G + N SK V + +R Q N +V VG+ ++ V F P Sbjct: 149 GFGAKLTNIFSKSFSVTCADSKRHKQFAMKWESNMTRVASPAKVGSYHGKDF-VKVTFIP 207 Query: 170 DETFFDSPRFSVSRLTHVLK--AKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAV 227 D F P L +LK G+ + + DE + G++D+ Sbjct: 208 DYERFGIPTMDEGTLKVLLKRVYDVAGTTGLRVYWNDE----------RLGISDF----- 252 Query: 228 NGLPTLPEKPFIGNFAGDTEAV----DWALLW-----LPEGGELLTESYVNLIPTMQGGT 278 K ++G + D V D A W +G S+VN I T++GG+ Sbjct: 253 --------KQYVGLYFEDDPTVVKVYDKAHRWEVMVSATDGSGFQQVSFVNNITTLKGGS 304 Query: 279 HVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLS 338 HV + + L+ A+ + +N GV+L I + ++ ++ +P F QTKE L+ Sbjct: 305 HVQHVLEPLVTALTNKVKSKN--KDGVELKPYQIKNYIFLFVNCQIVNPTFDSQTKETLT 362 Query: 339 SRQCAAFVSGVVKDAFILWLNQNVQAAEL---LAEMAISSAQ--------RRMRAAKKVV 387 ++ A F S + +N A L L E +S AQ ++M+ K V Sbjct: 363 TKP-AKFGSKYI-------MNPKAVAQILKSTLTERILSFAQGRLNIELKKKMKVTKAVN 414 Query: 388 RKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKI 444 R LT P L T N T L L EGDSA S R+ + PLKGK+ Sbjct: 415 R--LTGIPKLEDANNAGTRHARNCT-LILTEGDSAKTSCLAGLSVVGRDNYGVFPLKGKL 471 Query: 445 LNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQ---LRYGKICILADADSDGLHIATL 501 LN + S +++ + E+ +I +G+D + + LRYG I I+ D D DG HI L Sbjct: 472 LNVRDASYKQLVQNAEIQNILKIMGLDVSKKEQTTPDGLRYGSIMIMTDQDYDGSHIKGL 531 Query: 502 LCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNV 560 L L + +++ G + + P+ + G V T ++ ++ K + Sbjct: 532 LINLLHYFWPKMIQCRGFIREFVTPIIKATKGDSVLSFFTVQDYVRWVQSTNVAGWK--I 589 Query: 561 QRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 + +KGLG + +E ++ + L+ +D D D +D+ KKR +DR+ W+Q Sbjct: 590 KYYKGLGTSTDKEFKEYFVNIQ-QHLIDFIYEDNAD---DDSIDLAFNKKRVDDRKLWMQ 645 >UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS63_ENCCU Length = 1144 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 150/622 (24%), Positives = 269/622 (43%), Gaps = 73/622 (11%) Query: 23 PGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI-LHAD---QSLEVIDDGRGMPVDI 78 PG+Y + E+I N+ D + ++DVI + D + V ++G+G+PV I Sbjct: 54 PGLY-------KIFDEIIVNAADNKI--RDPKMDVIKVSIDPEGNEISVYNNGKGIPVRI 104 Query: 79 HPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQV-- 136 H EE V ELI L +++ + +GG +G G + N SK V D +V Sbjct: 105 HKEENVYVPELIFGNLLTSSNYNDDEKKVTGGRNGYGAKLCNIFSKEFVVETA-DCEVKK 163 Query: 137 -YNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRL----THVLKAK 191 Y + + V++ + K + T + F PD RF ++RL +L+ + Sbjct: 164 YYRQRYRDNMGVKEDPEISRYTKGDF-TKITFKPDLR-----RFKMTRLDDDIVALLRKR 217 Query: 192 AVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDW 251 G+ K +N ++ G +Y+ L P + D W Sbjct: 218 VYDLAGIVKDVKIFLN---EKRIEVKGFKEYVK-----LYIPPGASVVHQVINDR----W 265 Query: 252 ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAED 311 L + S+VN I T +GGTHVN + + ++D + E + + +G+ + Sbjct: 266 ELALTTSEEQFQQVSFVNGICTTKGGTHVNHVVERIVDPLVEAIQKKE---KGLSVRPFQ 322 Query: 312 IWDRCAYVLSVKMQD-PQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAE 370 + C +V + D P F QTKE L+ R A F+ + +N + + Sbjct: 323 VRS-CMFVFINSLIDNPAFDSQTKENLTLRASAFGSKCEPMGDFVKSIIKNTPIVQKITS 381 Query: 371 MAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTE---LFLVEGDSAGGSAK 427 A + ++++ +L+ P KL D +R++ L L EGDSA A Sbjct: 382 FAKAKQSQQLKKTDGAKTSRLSGIP----KLEDANFAGTSRSKDCTLILTEGDSAKTLAV 437 Query: 428 QARD---REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRY 482 R+ + PL+GK+LN E S +++ + E+ I +G+ + +D+S LRY Sbjct: 438 AGLSVVGRDAYGVFPLRGKLLNVREASHKQIMENAEISSIKKILGLQHNKVYEDVSSLRY 497 Query: 483 GKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEV--YYAL 539 G + I+ D D DG HI L+ + +L+K G + + P+ R +V ++ L Sbjct: 498 GHVMIMTDQDHDGSHIKGLIINFLDHFYPSLLKIPGFLQEFITPIIRATKKGQVRDFFTL 557 Query: 540 TEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE--TTLDPNTRRLVQLTIDDEDDQ 597 E E+ K+ + N++ +KGLG ++ + L + + L +D++ Sbjct: 558 PE------YEEFKKNEDGWNIKYYKGLGTSTSADAKQYFSNLPVHVKSFTPLAAEDKE-- 609 Query: 598 RTDAMMDMLLAKKRSEDRRNWL 619 ++D+ KK+++ R+ WL Sbjct: 610 ----LIDLAFNKKKADARKTWL 627 >UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyostelium discoideum RepID=TOP2_DICDI Length = 1521 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 155/624 (24%), Positives = 275/624 (44%), Gaps = 65/624 (10%) Query: 23 PGMYTDTTRPNHLGQEVIDNSVD-EALAGHAKRVDVILHADQS-LEVIDDGRGMPVDIHP 80 PG+Y + E++ N+ D + G+ K + V++ ++ + V +DG G+P+ +H Sbjct: 151 PGIY-------KIFDEILVNAADNKQREGNMKFIKVVIDREKGFISVTNDGAGIPIQVHS 203 Query: 81 EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKR--VEVNVRRDGQVYN 138 E + ELI L + + + +GG +G G + N S + VE + ++Y Sbjct: 204 EHKIYIPELIFGNLLTSSHYDDSEKRLTGGRNGFGAKLANIFSTKFIVECADSKSKKLYK 263 Query: 139 IAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGV 198 F N + ++ + + + T + F+P+ F F L +L + G Sbjct: 264 QTFTNNMRSKEDPKITSYQNKTDYTKITFYPELDRFGMVEFD-DDLVALLSKRVYDIAGC 322 Query: 199 EITFKDEINNTEQRW-CYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWAL-LWL 256 T K +N+ E ++ +N Y + N EK D W L + L Sbjct: 323 NPTLKVSLNDEELGIRSFEKYINLYFPDEENAPKVYYEK------VSDR----WELAVTL 372 Query: 257 PEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRC 316 + + S+VN I T++GGTHV ++ A++E +N +K + I + Sbjct: 373 SKESQFNQVSFVNSICTVKGGTHVTHALSNIVTAIQEQVNKKNKGSADIKPAF--IKNHL 430 Query: 317 AYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI---LWLNQNVQAAEL-LAEMA 372 + ++ +++P F QTKE L+S+ + + FI L + A+ L A+ Sbjct: 431 SVFVNCLIENPHFDSQTKETLTSKISSFGSRCEPSEKFIKRVLDSKSGIVASILEFAQFK 490 Query: 373 ISSAQRRMRAA----KKVVRKKLTSGPALPG-KLADCTAQDLNRTELFLVEGDSAGGSAK 427 SA +R ++ KV KL G K DCT L L EGDSA A Sbjct: 491 DQSALKRSTSSGGKKGKVSIPKLDDANLAGGTKSEDCT--------LILTEGDSAKSLAT 542 Query: 428 QARD---REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRY 482 +++ PLKGK+LN + S+ +V+ + E+++I +G+ + LS LRY Sbjct: 543 AGISVVGKDHYGAFPLKGKLLNVRDQST-KVINNDEINNIVTILGLKYGKVYETLSDLRY 601 Query: 483 GKICILADADSDGLHIATLLCALFVKHF--RALVKHGHVYVALPPLYRIDLGKE---VYY 537 G + I+ D D DG HI L+ + V HF L G + + P+ ++ + +Y Sbjct: 602 GHLMIMTDQDHDGSHIKGLIINM-VHHFWPTLLRMPGFLVEFITPIVKVFKNNQKPISFY 660 Query: 538 ALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQ 597 + E L+ + +V+ +KGLG P + +E D L + ID E D+ Sbjct: 661 TMPE-----FLKWRETNDKGWDVKYYKGLGTSTPGEGKEYFSD-----LERHKIDFEWDE 710 Query: 598 RTDAMMDMLLAKKRSEDRRNWLQE 621 + +++ +K R++DR+ W+ E Sbjct: 711 GANDNIELAFSKSRADDRKKWMAE 734 >UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalum RepID=Q7YZS4_PHYPO Length = 1498 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 159/657 (24%), Positives = 282/657 (42%), Gaps = 94/657 (14%) Query: 23 PGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRV--DVILHADQSLEVIDDGRGMPVDIHP 80 PG+Y + E++ N+ D H V I A+ + ++++G+G+PV +H Sbjct: 369 PGLY-------KIFDEILVNAADNKQRDHKMNVLQVTIDPANNIISILNNGKGIPVQLHE 421 Query: 81 EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYN 138 +E V EL+L L G F +K + +GG +G G + N S EV ++Y Sbjct: 422 KEKVYVPELVLGTLLTGSNFDDKIAKVTGGRNGFGAKLTNIFSTSFEVETADAARHKLYR 481 Query: 139 IAF-ENGEKVQDLQVVGTCGKRNTG-TSVHFWPDETFFDSPRFSVSRLTHVLKAK----A 192 ++ EN + + + G + + T + F PD F+ + ++K + A Sbjct: 482 QSWSENMSQRTEPSIEHYSGPKGSDYTRITFSPDLAKFNMQSLENGDILRLMKRRIYDMA 541 Query: 193 VLCPGVEITFKD-EINNTEQRWC--YQDGLNDYLAEAVNGL------------------- 230 P V+++ I + + YQ L+ A +G Sbjct: 542 ACLPSVQVSLNGIPIPSGFDAYVSMYQPKDAQPLSNAEDGAQNEQEEHGEGAEGTEGEQP 601 Query: 231 ---PTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 PT + PF+ D V L L G+ S+VN I T +GGTHVN + + + Sbjct: 602 GKQPT--KHPFVYAKINDRWQVAVGLTML--EGQFSQVSFVNSIATSKGGTHVNHVAEQV 657 Query: 288 LDAMREFC--EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 345 + A+ E +Y ++ R I + ++ +++P F QTK+ L++R Sbjct: 658 VKAIHERITKKYPDLDTRPAH-----IRNNLFVFVNCLIENPAFDSQTKDTLTTRPAHFG 712 Query: 346 VSGVVKDAF-------ILWLNQNVQAAEL--LAEMAISSAQRR-----MRAAKKVVRKKL 391 + + D+F + +++ V A+L +AE SS ++ ++A K+ Sbjct: 713 SACDLPDSFLKRIVAQVPIIDKVVGWAKLKQMAEFEKSSTRKPKDKAGIKAIPKLDDANF 772 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTW 448 GP + ++CT L + EGDSA A R+ + PL+GK+LN Sbjct: 773 AGGP----RSSECT--------LIITEGDSAKSLAVSGLSIVGRDKYGVFPLRGKLLNVR 820 Query: 449 EVSSDEVLASQEVHDISVAIGIDP-----DSDDLSQLRYGKICILADADSDGLHIATLLC 503 + S V+ ++E+ + + +G+ P ++D ++LRYGK+ ++ D D DG HI L Sbjct: 821 DQSPKRVMENEELKHLRMILGLTPGKEYRTAEDRAELRYGKVMLMTDQDHDGSHIKGLFV 880 Query: 504 ALFVKHFRALVKH-GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKK-GKPNVQ 561 ++ + +L++ G + + P+ + G EV T E E QL + K ++ Sbjct: 881 NFMIQFWPSLLEQDGFLEQFITPIVKAFHGAEVQTFYTTSEYEIWRSQLPDDQLSKWRIK 940 Query: 562 RFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 +KGLG + + RE D R I+ + D T MDM K + R+ W Sbjct: 941 YYKGLGTSSSQEAREYFKDLERHR-----IEFKWDDTTTTKMDMAFGKDETAQRKTW 992 >UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=TOP2M_DICDI Length = 1284 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 138/591 (23%), Positives = 271/591 (45%), Gaps = 41/591 (6%) Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 + S+ +++DG+G+PV +H E VE+++ L +G F++ + GG +G G + N Sbjct: 205 ENSISIMNDGKGIPVVMHQTENCYVVEMVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNI 264 Query: 122 LSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCGKRNTG-TSVHFWPDETFFDSPR 178 SK V + G+ Y + N + ++ G+ + T + F PD F Sbjct: 265 FSKEFTVETVDKSSGKKYFQRWSNNMGDRSEPIITPIGEGESDYTKITFKPDLEKFKIKS 324 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL--PEK 236 + +++ + G +N + +Q + Y N E+ Sbjct: 325 LWDDNILQLMERRLYDIAGCNTELMVTLNGKRLNYNFQSYVKLYEHHLNNSTKREDNEEQ 384 Query: 237 PFIGNFAGDTEAVDWAL-LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 +F + W + + L E G+ S+VN I T++GGTHVN L ++ + E Sbjct: 385 YREESFEFGEISPRWKIGIGLSETGQFTQVSFVNSINTVKGGTHVNFLADQIVRYVGEKL 444 Query: 296 EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 + ++ +++ +I A ++ + +P F Q+KE L+++ + + ++ + Sbjct: 445 KKKH---SDLEIRPMNIKHHLALFVNCLVDNPSFDSQSKETLTTKPMLFGSTPEIPESLL 501 Query: 356 LWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCT-AQDLNRTE- 413 +N + E +A A+ + + + + K T ++ KL D A L E Sbjct: 502 AQFVKNSKIIERVAGWALMKQKADLIHSTSGRQSKTTLIKSI-SKLDDANWAGGLKSKEC 560 Query: 414 -LFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 L + EGDSA A R + PL+GK+LN +V+S ++L+++E+++++ +G Sbjct: 561 TLIITEGDSAKSLALAGLSVVGRNSYGVFPLRGKLLNVRDVASKQLLSNEEINNLTTILG 620 Query: 470 IDP----DSDD-LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALP 524 + D+D+ + LRYG++ I+AD D DG HI L+ + L+K G + + Sbjct: 621 LSHKNSYDTDESMEDLRYGRVMIMADQDHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVT 680 Query: 525 PLYRI---DLGKEVYYALTEEEK--EGV-LEQLKRKKGKPNVQRFKGLGEMNPMQLRE-- 576 P+ + K+ ++ + + EK E + +QLK+ ++ +KGLG + +E Sbjct: 681 PIIKATKSSTQKKSFFTIKDYEKWRETISSDQLKQY----TIKYYKGLGTSTSAEAKEYF 736 Query: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 + LD + +++ DE D ++ M AK S R+ W++E DM++ Sbjct: 737 SNLD---KHVIKFIWGDE----ADDLIKMAFAKDLSSLRQRWIKET-DMSQ 779 >UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginalis RepID=Q6RCM1_TRIVA Length = 1458 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 152/606 (25%), Positives = 261/606 (43%), Gaps = 90/606 (14%) Query: 61 ADQSLEVIDDGRGM-------PVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 A + V +DG+G+ P D + E +P E I +L +++K + +GG +G Sbjct: 95 AQNRISVWNDGKGISTQKQFSPND-NCEYYIP--EFIFSQLLTSSNYNDKQEKVTGGRNG 151 Query: 114 VGISVVNALSKRVEVNVRRDGQVYN---IAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD 170 G + N SK+ +N+ + N +N +Q ++ GK + T + FWPD Sbjct: 152 YGAKLANIFSKKFHINIYNADEGINYQQTITDNMTNIQPPKLKNGKGK-GSYTEISFWPD 210 Query: 171 ETFF----------DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLN 220 F D R V L +L + G ++ K +W +D Sbjct: 211 LERFNLQTITKDHVDLIRRRVYDLADILPKVKIFWNGNQVPIK--------KW--EDYCK 260 Query: 221 DYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGG-ELLTESYVNLIPTMQGGTH 279 YL E V KP + + + W + P E S+VN + T GGTH Sbjct: 261 VYLKEDV--------KPLVCEVKNE-KGYTWKIGVAPSKSREFQQISFVNCVATSNGGTH 311 Query: 280 VNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQ-DPQFAGQTKERLS 338 V+ + + + ++ + R G + + YV + +P F QTKERL+ Sbjct: 312 VDVVVNQITKYITDYLKNRR---SGKVETKPSVVKNFLYVFVDSLVINPSFDSQTKERLT 368 Query: 339 SRQCAAFVSGVVKDAFI-LWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTSG 394 Q + D F+ L ++ A L+ E A QR+ M+ KK G Sbjct: 369 LDQKKLKDDCKLPDNFLDKILKTDIVA--LVTEYANFKEQRKVANMKGTKK--------G 418 Query: 395 PALPGKLADCT----AQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNT 447 + KL D A+ L T L L EGDSA +A R+Y + PL+GK+LNT Sbjct: 419 RLIINKLEDANMAGKAESLKCT-LILTEGDSAKATAVTGLATIGRDYYGVFPLRGKLLNT 477 Query: 448 WEVSSDEVLASQEVHDISVAIGIDP-----DSDDLSQLRYGKICILADADSDGLHIATLL 502 ++S+ ++ + E+ +I +G+DP + D + +LRYG I I+AD D DG HI L+ Sbjct: 478 RDISAKKLSENDEIQNIIKIMGLDPMEKYENDDSMKRLRYGSIMIMADQDVDGSHIKGLI 537 Query: 503 CALFVKHFRALV-KHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPN-- 559 + L+ K + + P+ ++ G A++ + + + K N Sbjct: 538 INFVHSMWPNLLKKRNFITEFITPIVKVTKGNNKKGAIS----FFTIPEFSQWKAANNNG 593 Query: 560 ----VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDR 615 ++ +KGL + +E + + + V + ++ D++R +++ AKKR++DR Sbjct: 594 KGYKMKYYKGLATSTAEEAKEYFSNISKHKKVFIYTNENDEER----INLAFAKKRADDR 649 Query: 616 RNWLQE 621 +NWL + Sbjct: 650 KNWLAQ 655 >UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_PBCV1 Length = 1061 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 159/604 (26%), Positives = 261/604 (43%), Gaps = 66/604 (10%) Query: 38 EVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 E+I NS D V + ++S+ V +DG +P++ H E ELI L AG Sbjct: 56 EIITNSADCYNRDKKLTVLKVCIDEKSVSVHNDGCNIPIEKHDVEKCYIPELIFGHLLAG 115 Query: 98 GKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCG 157 F + + G +G+G N SK+ +V + + Y ++EN V V TC Sbjct: 116 ENFDDTEQRTGAGRNGIGSKATNIFSKKFDVEICDGKKKYKQSWENNMSVMSKPKVTTCS 175 Query: 158 KRNTGTSVHFWPD-ETF----FDSPRFS-----VSRLTHVLKAKAVLCPGVEITFKDEIN 207 K + T+ F+PD E F FD S V + VL V+ G + EI Sbjct: 176 KDSYITTT-FFPDFERFGIDSFDDDTMSIMVRRVYDMAAVLNKVKVMLNGKRL----EIK 230 Query: 208 NTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESY 267 NTE DY + V G T ++ F + +W + + E S+ Sbjct: 231 NTE----------DYFSLYV-GNKTETKRAF------EHTPENWDVA-VSCSDEFTPVSF 272 Query: 268 VNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDP 327 VN + T +GGTHVN + + A+ E + I+ + + + R ++ + +P Sbjct: 273 VNSVVT-RGGTHVNAVTDAVAKAVVEAAAKKKIVVKPMTVKG-----RMFVFVNATVVNP 326 Query: 328 QFAGQTKERLSSRQCAAFVSGV-VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKV 386 F QTKE L+SR +S VK A + L+ +Q + + ++ AKK Sbjct: 327 TFDSQTKEILTSRNARVTLSDTFVKKAVGVLLDAVIQETNVRTSLVDQKELKKTDGAKK- 385 Query: 387 VRKKLTSGPALPGKLADCTAQDLNRTE---LFLVEGDSAGGSAKQARD---REYQAIMPL 440 +++ P KL D N ++ L L EGDSA A RE + PL Sbjct: 386 --SRVSGIP----KLNDAAWAGTNHSKMCTLILTEGDSAATLAIAGLSVVGRERYGVFPL 439 Query: 441 KGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHI 498 +GK+LN + S + ++E+ + +G+ D S LRYG + I+ DAD DG HI Sbjct: 440 RGKLLNVRDASVASITKNEEITALKQILGLQTGKVYKDTSSLRYGHVMIMTDADVDGTHI 499 Query: 499 ATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEV--YYALTEEEKEGVLEQLKRKK 555 + L+ F F +L++ G + + P+ GK+V +Y+L + E + + Sbjct: 500 SGLVMNFFHSCFPSLLEIPGFLKKFITPIVVAKKGKDVREFYSLPDYED---WVKTTKDY 556 Query: 556 GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDR 615 K ++ +KGLG + + N + L++ D + ++D K R+EDR Sbjct: 557 SKYQIKYYKGLGTSSSTDAKHYF--SNLKTLMKTFTWTSD---SGELIDRSFNKTRAEDR 611 Query: 616 RNWL 619 + W+ Sbjct: 612 KEWM 615 >UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID=B3H4G2_ARATH Length = 1438 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 161/634 (25%), Positives = 282/634 (44%), Gaps = 73/634 (11%) Query: 18 PVRRRPGMYTDTTRPNHLGQEVIDNSVD-EALAGHAKRVDVILHADQSL-EVIDDGRGMP 75 PV PG+Y + E++ N+ D + V V++ +Q+L V + G G+P Sbjct: 74 PVTYVPGLY-------KIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGVP 126 Query: 76 VDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKR--VEVNVRRD 133 V+IH EEG+ E+I L + + + +GG +G G + N S +E + Sbjct: 127 VEIHQEEGIYVPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKR 186 Query: 134 GQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTH---VLKA 190 + Y FEN + V+ C K T V F P D +F+++ L L + Sbjct: 187 LKKYKQVFENNMGKKSEPVITKCNKSENWTKVTFKP-----DLKKFNMTELEDDVVALMS 241 Query: 191 KAVL----CPGVEITFKDEINNTE-QRWCYQDGLNDYLAEAVNG-----LPTLPEKPFIG 240 K V C G + K E+N + + D ++ YL+ A LP L EK Sbjct: 242 KRVFDIAGCLGKSV--KVELNGKQIPVKSFTDYVDLYLSAANKSRTEDPLPRLTEK---- 295 Query: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300 D W + G+ S+VN I T++GGTHV+ + + + + +N Sbjct: 296 --VNDR----WEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHIVAAVNKKN- 348 Query: 301 LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ 360 + + A ++ + ++ + +P F QTKE L+ RQ + + + F+ + + Sbjct: 349 --KNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVGK 406 Query: 361 NVQAAELL--AEMAISSAQRRMRAAK--KVVRKKLTSGPALPGKLAD-CTAQDLNRTELF 415 + LL A+ + ++ AK +V+ +KL GK + CT L Sbjct: 407 SGVVENLLSWADFKQNKDLKKSDGAKTGRVLVEKLDDAAEAGGKNSRLCT--------LI 458 Query: 416 LVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 L EGDSA A R Y + PL+GK+LN E S+ ++ ++E+ ++ +G+ Sbjct: 459 LTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLLNVREASTTQITNNKEIENLKKILGLKQ 518 Query: 473 D--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA-LPPLYRI 529 + ++++ LRYG++ I+ D D DG HI LL + +L++ V + P+ + Sbjct: 519 NMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKA 578 Query: 530 DL--GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE--TTLDPNTRR 585 K+V + E E E LK +++ +KGLG + +E + L + + Sbjct: 579 TRKGTKKVLSFYSMPEYEEWKESLKGNATGWDIKYYKGLGTSTAEEGKEYFSNLGLHKKD 638 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 V ED+Q +A +++ +KK+ E R+NWL Sbjct: 639 FVW-----EDEQDGEA-IELAFSKKKIEARKNWL 666 >UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=Q5KSK9_COPCI Length = 1572 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 149/588 (25%), Positives = 250/588 (42%), Gaps = 59/588 (10%) Query: 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN--A 121 ++ V ++GRG+P++IH +E + E+I L + + + +GG +G G + N + Sbjct: 185 TISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTSTNYDDDEKKLTGGRNGYGAKLANIYS 244 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGK----RNTG----TSVHFWPDETF 173 L VE + Q Y + + + CGK +NT T + F PD Sbjct: 245 LEFTVETADKNTSQKYKQTWTDN--------MSKCGKAKITKNTRGEEYTRITFRPDLKR 296 Query: 174 FDSPRF---SVSRLTHVLKAKAVLCPGVEITFKDE---INNTEQRW-CYQDGLNDYLAEA 226 F +VS L + A V++ DE I N +Q Y + + AE Sbjct: 297 FGMNSIDEDTVSLLKRRVFDMAGTVKDVKVFLNDERLKIKNFKQYVEMYVSSVQEAAAEK 356 Query: 227 VNGLPTLPEKPFIGNFAGDTEAVDWALLW-LPEGGELLTESYVNLIPTMQGGTHVNGLRQ 285 G P++ I D W + + L G S+ N I T +GGTHVN + Sbjct: 357 SGGA-AQPKQTVIHEQISDR----WEIAYTLSTEGTFQHVSFANSIATSKGGTHVNYIAD 411 Query: 286 GLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 345 + A+ +N +G + I + + + +P F QTKE L+ Sbjct: 412 QISKALVTSISKKN---KGATVKPAQIRNHMWLFVKSLIVNPTFDSQTKELLTLPSSKFG 468 Query: 346 VSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCT 405 + D FI + ++ +L A A ++M+ A R +L KL+D Sbjct: 469 SKPTISDEFIKKVAKSGIVDNVL-NWAKFKADQQMKRADGTKRSRLLG----LAKLSDAN 523 Query: 406 ------AQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVL 456 AQD L L EGDSA A R+ + PL+GK+LN E D+++ Sbjct: 524 NAGTRHAQDCT---LILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVREARHDQIM 580 Query: 457 ASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV 514 ++E+ +I +G+ + D + S LRYG++ I+ D D DG HI L+ + +L+ Sbjct: 581 KNEEIQNIKKIMGLQHNKDYTNTSSLRYGRLMIMTDQDHDGSHIKGLIINFLDHFYPSLL 640 Query: 515 KHGHVYVAL-PPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573 K V P+ R+ G +V T E E LE+ + K + +KGLG Sbjct: 641 KIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEETPDAR-KWESKYYKGLGTSEDKD 699 Query: 574 LRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 RE + ++ E D+ ++D+ +KK++++R+ WL++ Sbjct: 700 ARE-YFSKMEKHMIPFAPTQEGDRE---LIDLAFSKKKADERKEWLRQ 743 >UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV61_PHYIN Length = 1329 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 162/632 (25%), Positives = 268/632 (42%), Gaps = 66/632 (10%) Query: 38 EVIDNSVDEALAGHAKR-VDVILHADQS-------LEVIDDGRGMPVDIHPEEGVPAVEL 89 E+I N+VD + + R +DVI+ + V +DG+G+PV H E V EL Sbjct: 34 EIIVNAVDNKVRDPSMRHLDVIIEPGSKANGYRPWISVYNDGKGIPVKFHKTEKVYVPEL 93 Query: 90 ILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKR--VEVNVRRDGQVYNIAFENGEKV 147 +L L G F + + +GG HG G + N SK VE G Y + N + Sbjct: 94 VLGHLLTGSNFDDTAARLTGGRHGYGAKLTNIFSKEFVVETGDTSMGLRYKQVWHNNMRT 153 Query: 148 Q-DLQVVGTCGK-RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 + + ++ GK T V F PD F+ + + S +T VLK + G + Sbjct: 154 RGEPEITEFSGKDAKDFTKVSFSPDLEKFEMEKLTAS-MTRVLKKRVYDVAGCLSDVQVT 212 Query: 206 INNTEQRWC-YQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVD---------WALLW 255 +N + ++ + + N + KP + + D W + Sbjct: 213 LNGKKLPISGFESYIKTFRYSTTNNPVSKTAKPSKDSDDAASSGSDYIYSRVNKRWKIGV 272 Query: 256 LPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDR 315 LP + S+VN + ++GG+HV + + R E+ N + +S + Sbjct: 273 LPSDVGFVQVSFVNGMSALRGGSHVGYVSDQIC---RRVAEHVNKKFPELSVSTAQVKPH 329 Query: 316 CAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISS 375 A ++ ++++P F Q KE ++SR F S V +L L V + + E + S Sbjct: 330 MAIFINCQIENPTFDSQMKEFMTSRP-PTFGSTCVLSERLLKL---VLSDSGIVERVVQS 385 Query: 376 AQRRMRAA--KKVVRKKLTSGPALPGKLADCTAQDLNRTE---LFLVEGDSA-----GGS 425 A+ R RAA KKV + S KL D R+ L L EGDSA G Sbjct: 386 ARARQRAALLKKVSSTRAKSSSVNVPKLEDANLAGGARSSECSLILTEGDSAKALAVAGL 445 Query: 426 AKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-----DDLSQL 480 A RD+ + PL+GK+LN + + ++ + E + +G+ D + +L Sbjct: 446 AVVGRDQ--YGVFPLRGKLLNVRDATVAQLGKNAEFAHLCTILGLRMDEHYGTEEARQKL 503 Query: 481 RYGKICILADADSDGLHIATLLCALFVKHFRALVKH-GHVYVALPPLYRID--------- 530 RYG++ + D D DG HI LL LF + L+K G + + P+ ++ Sbjct: 504 RYGRVIAMTDQDHDGSHIKGLLFNLFHTFWPELLKEGGFISEFITPIIKVSPTSKRVGTE 563 Query: 531 --LGKEVYYALTEE-EKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLV 587 L +++L E E + ++ K ++ +KGLG + RE D + LV Sbjct: 564 RGLETRRFFSLPEYFEWKASIDSADLKHYV--IKYYKGLGTSTSAEGREYFSDLDN-HLV 620 Query: 588 QLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 ++D DA +DM+ +K R+ DR+ WL Sbjct: 621 DFHWSGDND--GDA-LDMVFSKARAADRKAWL 649 >UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2V5K5_NAEGR Length = 1135 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 147/618 (23%), Positives = 271/618 (43%), Gaps = 58/618 (9%) Query: 38 EVIDNSVDEA--LAGHAKRVDVIL-HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRL 94 E++ N+VD H + V + A + + ++G+ +PV++H E + EL+ L Sbjct: 67 EILVNAVDNHHRKGTHTNELRVTIDEAKNWIHIRNNGKSVPVEMHKIEKIYVPELVFGNL 126 Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAF--ENGEKVQDLQV 152 G F + +F+GG +G G + N S + + + I +N ++ + Sbjct: 127 LTGSNFDDNEVKFTGGRNGYGAKLANIFSTDFTIEIMDHKGTHYIQNWKKNMSQISTPTI 186 Query: 153 VGTCGKRNTGTSVHFWPDETFFDSPRFSVS-RLTHVLKAK----AVLCPGVEITFKD--- 204 V K V F PD F S + + +LK + + P + + D Sbjct: 187 VENKQKTEPYIQVSFHPDFKKFQSTGLNKELNMIDLLKRRIYDLSACNPKLNVYLNDKKV 246 Query: 205 EINNTEQ--RWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGEL 262 E++N ++ + YQ+ N PEK F+ D W + GE Sbjct: 247 EVDNFKEYVKLFYQN----------NSSGEHPEKMFVHKHICD----GWEIAIGASVGEE 292 Query: 263 LTE-SYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLS 321 + S+VN I T+QGG+HVN + L + E+ + + +S + + ++ Sbjct: 293 FNQISFVNSIATVQGGSHVNFVLNQLSTKISEYIA-KTYTDLQLTISPYMVRNHITLFIN 351 Query: 322 VKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR 381 +++P F QTKE L+++ + V+ + I ++ + + I+ A + Sbjct: 352 SLIENPTFDSQTKETLTTKSISFAQKVVISNDLI----NSIANHTPIIDNIIAFANYKQS 407 Query: 382 AAKKVVRKKLTSGPALPGKLADCTAQDLNRTE---LFLVEGDSA-----GGSAKQARDRE 433 +A KK S +P KL D NR+ L L EGDSA G + RDR Sbjct: 408 SASSKKFKKRESKLLIP-KLDDANLAGTNRSMECVLILTEGDSAKALAISGLSVVGRDR- 465 Query: 434 YQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLS------QLRYGKICI 487 + PLKGK+LN E S+D++ +QE+ ++ +G+D S S +LRYGK+ + Sbjct: 466 -FGVFPLKGKLLNVREASADQIRDNQEIQNLKKILGLDDVSKTDSFEELTKRLRYGKVML 524 Query: 488 LADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGV 547 + D D DG HI LL + + L+++ V + P+ ++ G +V + E + Sbjct: 525 MCDQDHDGSHIKGLLLNMIHFFYPELLRNNFVDEFITPIIKVSKGSDVKSFFSIPEFQNW 584 Query: 548 LEQL-KRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDML 606 ++ + +K + N + +KGLG N + + R ++ L DD+ ++ +++ Sbjct: 585 WTKVPENEKNRWNQKYYKGLG-TNSSKEAKDYFSNLKRHVIALQYDDD----SEPNIELA 639 Query: 607 LAKKRSEDRRNWLQEKGD 624 +K + R++W+ D Sbjct: 640 FSKDLANARKSWVASLKD 657 >UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2_ARATH Length = 1473 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 161/634 (25%), Positives = 282/634 (44%), Gaps = 73/634 (11%) Query: 18 PVRRRPGMYTDTTRPNHLGQEVIDNSVD-EALAGHAKRVDVILHADQSL-EVIDDGRGMP 75 PV PG+Y + E++ N+ D + V V++ +Q+L V + G G+P Sbjct: 74 PVTYVPGLY-------KIFDEILVNAADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGVP 126 Query: 76 VDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKR--VEVNVRRD 133 V+IH EEG+ E+I L + + + +GG +G G + N S +E + Sbjct: 127 VEIHQEEGIYVPEMIFGHLLTSSNYDDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKR 186 Query: 134 GQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTH---VLKA 190 + Y FEN + V+ C K T V F P D +F+++ L L + Sbjct: 187 LKKYKQVFENNMGKKSEPVITKCNKSENWTKVTFKP-----DLKKFNMTELEDDVVALMS 241 Query: 191 KAVL----CPGVEITFKDEINNTE-QRWCYQDGLNDYLAEAVNG-----LPTLPEKPFIG 240 K V C G + K E+N + + D ++ YL+ A LP L EK Sbjct: 242 KRVFDIAGCLGKSV--KVELNGKQIPVKSFTDYVDLYLSAANKSRTEDPLPRLTEK---- 295 Query: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300 D W + G+ S+VN I T++GGTHV+ + + + + +N Sbjct: 296 --VNDR----WEVCVSLSEGQFQQVSFVNSIATIKGGTHVDYVTSQITNHIVAAVNKKN- 348 Query: 301 LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ 360 + + A ++ + ++ + +P F QTKE L+ RQ + + + F+ + + Sbjct: 349 --KNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVGK 406 Query: 361 NVQAAELL--AEMAISSAQRRMRAAK--KVVRKKLTSGPALPGKLAD-CTAQDLNRTELF 415 + LL A+ + ++ AK +V+ +KL GK + CT L Sbjct: 407 SGVVENLLSWADFKQNKDLKKSDGAKTGRVLVEKLDDAAEAGGKNSRLCT--------LI 458 Query: 416 LVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 L EGDSA A R Y + PL+GK+LN E S+ ++ ++E+ ++ +G+ Sbjct: 459 LTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLLNVREASTTQITNNKEIENLKKILGLKQ 518 Query: 473 D--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA-LPPLYRI 529 + ++++ LRYG++ I+ D D DG HI LL + +L++ V + P+ + Sbjct: 519 NMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLINFIHSFWPSLLQVPSFLVEFITPIVKA 578 Query: 530 DL--GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE--TTLDPNTRR 585 K+V + E E E LK +++ +KGLG + +E + L + + Sbjct: 579 TRKGTKKVLSFYSMPEYEEWKESLKGNATGWDIKYYKGLGTSTAEEGKEYFSNLGLHKKD 638 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 V ED+Q +A +++ +KK+ E R+NWL Sbjct: 639 FVW-----EDEQDGEA-IELAFSKKKIEARKNWL 666 >UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2UZM0_NAEGR Length = 1457 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 145/632 (22%), Positives = 279/632 (44%), Gaps = 75/632 (11%) Query: 16 LEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHA-KRVDVILHADQS-LEVIDDGRG 73 ++ ++ P +Y + E++ N+ D ++ ++ V ++ +Q+ + V ++G G Sbjct: 94 MKTIKFVPALY-------KIFDEILVNAADHSVRDETCNKIKVTINPEQNEISVYNNGAG 146 Query: 74 MPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRV---EVNV 130 +PV IH E + +I L F + + +GG +G G + N S++ V+ Sbjct: 147 IPVKIHAEHKIYVPTMIFGHLLTSSNFDDTQKRVTGGRNGYGAKLTNIFSEKFIVETVDS 206 Query: 131 RRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKA 190 + +N EK ++ ++ TC K + T + F+PD + F + + +LK Sbjct: 207 EEKKKFRQTWTQNMEKEEEPKIT-TCSKAESYTEITFYPDLSKFGMDKLD-DDIVSLLKK 264 Query: 191 KAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL-AEAVNGLPTLPEKPFIGNFAGDTE-- 247 + G + G+ YL + + G+ T K ++ + D E Sbjct: 265 RVYDLAG----------------TLKTGIGIYLNGKKITGMKTF--KDYVKLYTIDKEIH 306 Query: 248 ----AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN--IL 301 W + G + S+VN I T +GG HV+ + + D +++ +N I Sbjct: 307 YFEDGKRWKVGITLSEGSMQQVSFVNSICTTKGGKHVDHIVNQVSDNIKKALVKKNNTIK 366 Query: 302 PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 P +K +W +V S+ + +P F Q+KE L++ + +AF+ + + Sbjct: 367 PAYIK---NQLW---VFVSSL-IINPSFDSQSKETLTTSMKDFGSKCKLDEAFLKKVTK- 418 Query: 362 VQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDS 421 A+E + + A +++ + + +LT G + D +++ + L L EGDS Sbjct: 419 -MASEAVLKYADFKSEKALNKKSGTKKSRLT-GISKLDDANDAGSKNSEKCTLILTEGDS 476 Query: 422 A-----GGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-- 474 A GG + RD Y + PLKGK LN + D+V+ ++E+ ++ +G+ D Sbjct: 477 AKALAVGGLSVVGRD--YYGVFPLKGKPLNVRDCKLDKVVKNEEISTLAKILGLKFDKTY 534 Query: 475 --DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRI-- 529 +D+ LRYG I I+AD D DG HI LL K + +L+K G + + P+ + Sbjct: 535 TKEDIKSLRYGSIMIMADQDHDGSHIKGLLINFIHKFWPSLLKIPGFLKEFITPIVKATN 594 Query: 530 DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE--TTLDPNTRRLV 587 + K+ + E E E L KG ++ +KGLG + +E + + + +R Sbjct: 595 NRTKKAVTFFSIPEYETWKEGLSDTKG-WTIKYYKGLGTSTAPEAKEYFSNMSLHQKRF- 652 Query: 588 QLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + D D + + +K +++R+ WL Sbjct: 653 ------KYDTDCDKKITSVFSKAATDERKEWL 678 >UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP2_PLAFK Length = 1398 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 105/377 (27%), Positives = 182/377 (48%), Gaps = 27/377 (7%) Query: 258 EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCA 317 +G + S+VN I T +GG+HVN + + LL ++ + +N G+++ + I + Sbjct: 339 DGSQFQQVSFVNSICTTKGGSHVNYIVEQLLSSLSKKANAKN--KGGMEIKSGHIRNHLW 396 Query: 318 YVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEM---AIS 374 ++ + +P F QTKE L+++ ++ D I NV + +L+ + A + Sbjct: 397 VFVNCLIVNPTFDSQTKETLTTKPVKFGSKCILSDKTI----NNVLKSPILSNILLWAQA 452 Query: 375 SAQ----RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR 430 AQ ++M+A R+++ P L D ++ L L EGDSA S Sbjct: 453 KAQVELKKKMKAGSSKARERIIGIPKLEDA-NDAGSKYSQECTLILTEGDSAKTSCLAGL 511 Query: 431 D---REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID---PDSDDLSQLRYGK 484 R+ + PLKGK+LN + S +++ ++E+ +I +G+D + DD+ LRYG Sbjct: 512 SIVGRDKYGVFPLKGKLLNVRDASFKQLMDNKEIQNIFRIMGLDITDKNKDDIKGLRYGS 571 Query: 485 ICILADADSDGLHIATLLCALFVKHFRALVKH-GHVYVALPPLYRIDLGKEVYYALTEEE 543 + I+ D D DG HI LL + K + +L+KH G + + P+ ++ G + Y T E Sbjct: 572 LMIMTDQDYDGSHIKGLLINMIHKFWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAE 631 Query: 544 KEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMM 603 E E K ++ +KGLG + ++ D +++ L D D + Sbjct: 632 YEQWKENTNLLGWK--IKYYKGLGTSTDREFKQYFSDIKNHKIMFLWTGDRDGDS----I 685 Query: 604 DMLLAKKRSEDRRNWLQ 620 DM +KKR EDR+ WLQ Sbjct: 686 DMAFSKKRIEDRKLWLQ 702 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 33/67 (49%) Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 ++ + V +DG G+PVDIH E + +I L + + + +GG +G G + N Sbjct: 96 NKRISVYNDGEGIPVDIHKEMNIYVPHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNI 155 Query: 122 LSKRVEV 128 SK V Sbjct: 156 FSKEFIV 162 >UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycodnaviridae RepID=C7U0P4_9PHYC Length = 1072 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 139/594 (23%), Positives = 242/594 (40%), Gaps = 93/594 (15%) Query: 73 GMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR 132 G+ V +H +EG+ EL L + + + GG +G G + N S + V + Sbjct: 99 GVGVRMHEKEGIWNPELTFGHLLTSTNYDDNKKRIVGGRNGYGAKLTNIYSSEFSI-VIK 157 Query: 133 DG---QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTH--- 186 DG Q Y + N V + + S+ F PD RF ++++ + Sbjct: 158 DGETKQCYTQKWNNNMTVCHPPKITKHSASTSSVSITFIPDWK-----RFGMNKMDNNIY 212 Query: 187 ------VLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240 V A P ++ F+ E LP + + Sbjct: 213 KIFEKRVWDANICTTPNCKVKFQGE-----------------------ALPKTSFEAYAK 249 Query: 241 NFAGDTEAVD-----WALLWLPEGGELLTESYVNLIPTMQGGTHVNG----LRQGLLDAM 291 G +E W++ P L S+VN I T +GGTHV+ + G++D M Sbjct: 250 MHEGVSEVSSVTTDRWSVCIGPSENGLEQVSFVNGICTTKGGTHVDHVASYIASGIIDEM 309 Query: 292 REFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS---- 347 + +KL + + + + +++P F+ Q K +S+ F S Sbjct: 310 ----------AKKIKLKPQQVKNTFNIFVKATLENPTFSSQVKSECTSK-AQDFGSKFEP 358 Query: 348 --GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCT 405 VK+A + + + A EM + ++ + K+T P L T Sbjct: 359 PKNFVKNALKTGIQEELTALSKFKEM------KELKKTDGARKSKITGIPKLDDANKAGT 412 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDEVLASQEVH 462 AQ + L + EGDSA A R++ + PL+GK N + S ++ ++QE + Sbjct: 413 AQS-GKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNVRDASVAQLTSNQEFN 471 Query: 463 DISVAIGID--PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 D+ +G+ D D+S+LRYG++ I+ DAD+DG HI L+ + + +L+K G V Sbjct: 472 DLKKILGLQQGKDYQDVSELRYGRLMIMTDADNDGSHIKGLILNMIHYFWPSLLKLGFVV 531 Query: 521 VALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKP--NVQRFKGLGEMNPMQLRETT 578 + P+ + G + T+ G+P ++ +KGLG + RE Sbjct: 532 SMVTPIIKASKGTQSKSFYTDSAFRSWYGN-----GQPGWKIKYYKGLGTSTSAEAREY- 585 Query: 579 LDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG--DMAEIEV 630 +++ LT+ + D TD + + KK+++DR+ WL E D E+EV Sbjct: 586 ----FKKIQDLTVKFDMDIMTDKSIVLAFDKKKADDRKTWLLESTAKDPKELEV 635 >UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID=D1ZCL6_SORMA Length = 1915 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 148/596 (24%), Positives = 255/596 (42%), Gaps = 73/596 (12%) Query: 65 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 + V ++G+G+PV+IH E ELI L AG F + + GG +G G + N S+ Sbjct: 213 ISVENNGKGIPVEIHGTEKCYVPELIFGHLLAGSNFDDNEKKTVGGRNGYGAKLTNIFSR 272 Query: 125 RV------EVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VN +R Q + +N K+ ++ T K + F PD + F Sbjct: 273 EFILECQDSVNGKRYKQTWT---DNMSKMSTPKI--TSNKAADFVRITFRPDFSKFGMAD 327 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-----QRWC--YQDGLNDYLAEAVNGLP 231 L +L + G K +N + +C Y + E +G Sbjct: 328 GIDDDLEALLYRRVYDMAGTVSGIKVWLNGEHLKLNFKTYCGLYAKAIAKERDEVADGED 387 Query: 232 TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA- 290 P +E W + + G S+VN I T GG+HVN + +++ Sbjct: 388 VTPATVIFEQ--QRSEGKLWEVGFTVSDGSFQQVSFVNNIATTSGGSHVNYIADQIIEVL 445 Query: 291 MREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV 350 M+E + +G L ++ ++ ++ + +P F+ QTKE+L+++ + Sbjct: 446 MKELQRKKG---KGHGLKTANVKNQFFIFINCLIDNPAFSSQTKEQLTTKPARFGSKCQL 502 Query: 351 KDAFILWLNQNVQAAELLA--------EMAISSAQRRMRAAKKVVRKKLTSGPALPGKLA 402 D F+ + Q+ LL+ ++A + +R K++ KL GK + Sbjct: 503 GDQFLKKVRQSEAIDNLLSFADKKRDKDLAKNDGSKR----KRISNDKLIEANYAGGKYS 558 Query: 403 -DCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLAS 458 +CT L L EGDSA G A R D + PL+GK+LN + S+D++L + Sbjct: 559 QECT--------LILTEGDSARGLAVAGRAILDPNRIGVFPLRGKMLNVRDASADQILKN 610 Query: 459 QEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516 +EV +I +G+ D LRYG + I+AD D DG HI LL F F +L++ Sbjct: 611 KEVENIKKFLGLKHGKVYTDTKDLRYGHLMIMADQDLDGSHIKGLLINFFECQFPSLLRI 670 Query: 517 GHVYVA-LPPLYRIDLGK--------EVYYALT--EEEKEGVLEQLKRKKGKPNVQRFKG 565 + + + P+ ++ G + ++ L EE KE +L+R K K KG Sbjct: 671 PNFFQEFITPVVKVWQGPNPRKPQKLQGFFTLPQYEEWKESHKNELRRWKYK----YLKG 726 Query: 566 LGE--MNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 LG + Q+ T L + + +T ++ + M ++ +KK+++ R+ WL Sbjct: 727 LGSSTTDDAQIYFTNLTKHLKEFDVMTREESE------MFELAFSKKKADARKEWL 776 >UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 Tax=Caenorhabditis RepID=TOP2M_CAEEL Length = 1054 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 146/606 (24%), Positives = 258/606 (42%), Gaps = 88/606 (14%) Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 L + V ++G G+PV+IHP EG+ L+ L + + + GG +G G Sbjct: 8 FLRETARISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNYDDSEIKTVGGRNGYGAK 67 Query: 118 VVNALSKRV---EVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKR-NTGTSVHFWPDETF 173 + N SK V+ R + ++N +K + +VV + T V F P Sbjct: 68 LCNIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILDETVKDYTKVEFVP---- 123 Query: 174 FDSPRFSVSRLT---------HVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLA 224 D RF + +L+ V + A L V++ + C DG DY+ Sbjct: 124 -DLERFQIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQK-------CDVDGFEDYVK 175 Query: 225 EAVNGLPTLPEKP----FIG-----NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQ 275 + L P +G NF G++ V LP+ S+VN I T + Sbjct: 176 MFNDSSSLLFLHPTPRWHVGVAKRNNFFGESHVV------LPK-----IVSFVNNINTEK 224 Query: 276 GGTHVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK 334 GG+HV+ + +++ ++ + + P + VK + I + + ++ +++P F QTK Sbjct: 225 GGSHVDYVMDKIVNIIKPIVDSKLGDPTKSVKPAV--IKNNLSIFINCLIENPSFESQTK 282 Query: 335 ERLSSRQ---CAAFVSGVVKDAFILWLNQNVQAAELLAEM------AISSAQRRMRAAKK 385 E L+++ + F K A W Q+ +++ E+ + + + + + Sbjct: 283 ETLTTKAKNFGSIFECDAKKTA--EWAEQSGLIEDIVEEVLNMKKKKLPGKRVSVSSVRD 340 Query: 386 VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKG 442 +V+ + + G CT L L EGDSA A + RE + PLKG Sbjct: 341 IVKLEDAEWAGITGTAEKCT--------LILTEGDSAKALALAGLEVLGRETYGVFPLKG 392 Query: 443 KILNTWEVSSDEVLASQEVHDISVAIGI---DPDSDDLSQLRYGKICILADADSDGLHIA 499 K+LN + ++E+ ++ +G+ D +S LRYG++ ILAD D DG HI Sbjct: 393 KLLNVSNLDDARASKNEEISNLLRILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIK 452 Query: 500 TLLCALFVKHFRALV-KHGHVYVALPPLYRIDLGKEV--YYALTEEEKEGVLEQLKRKKG 556 L+ K + +LV G + PL + G +V ++++ E K +E+ G Sbjct: 453 GLIVNFIHKFWPSLVHTDGFIQSFRTPLLKAKKGDKVRSFFSMNEYRKWADVEE----GG 508 Query: 557 KPNVQRFKGLGEMNPMQLRE--TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSED 614 K ++ +KGLG + RE + LD +T D+D R M + +S++ Sbjct: 509 KWKIKYYKGLGTSTSNEAREYFSDLDHHTVNFKYTGTTDDDAIR------MAFDRDKSDE 562 Query: 615 RRNWLQ 620 R+ W++ Sbjct: 563 RKEWIR 568 >UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PTE9_MALGO Length = 1376 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 162/665 (24%), Positives = 268/665 (40%), Gaps = 101/665 (15%) Query: 7 ADAIEVLTGLEPVRRRPGMY-------TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 +D + L+ LE V RRP Y T+T + +E + + G K D IL Sbjct: 24 SDTYQKLSQLEHVLRRPDTYIGSVERRTETMWVYDVAKEQMAYRDTSYVPGFYKIFDEIL 83 Query: 60 --HADQ-------------------SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 AD ++ V ++G+G+PV+IH +E V ELI L Sbjct: 84 VNAADNKVRDPSMDTMKVTIDKDAGTISVWNNGQGIPVEIHEKEQVYIPELIFGNLLTSS 143 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKR--VEVNVRRDGQVYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S VE ++ Y F N +D + Sbjct: 144 NYDDDEAKVTGGRNGFGAKLTNIYSTEFIVETADKQRELKYKQVFSNHMHDKDKPKITKN 203 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 ++ T + F PD + F S+ T L K V Sbjct: 204 TRKEEYTCITFKPDLSLFHMD--SIHPDTEALLMKRVF---------------------- 239 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 D + G P +P I A + W + + G S+VN I T++G Sbjct: 240 DMAGTRVIRPHGGNPV--PRPTIVYDASEDHGRLWEVGFAVSDGTARQVSFVNNIATIKG 297 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVK---LSAEDIWDRCAYVLSVKMQDPQFAGQT 333 G HV+ + +++ + E L +G K + A I + ++ ++ +P F QT Sbjct: 298 GKHVDHVESQIVERIMEH------LKKGKKDAPIKANHIRQQLWIFVNCQIVNPTFDSQT 351 Query: 334 KERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQ--------RRMRAAKK 385 KE L+ + A V+ D F A ++L I + Q R+++A Sbjct: 352 KETLTLKPSAFGSKWVMPDDF---------AKKVLKSGVIDNVQSIVQYHQDRQLQATDG 402 Query: 386 VVRKKLTSGPALPGKLADCTAQDLNRT---ELFLVEGDSAGGSAKQARD---REYQAIMP 439 R +++ KL D R+ L L EGDSA G A R+ + P Sbjct: 403 RKRSRVSVT-----KLEDANWAGTKRSAECTLILTEGDSAKGLAVSGLSEVGRDAYGVFP 457 Query: 440 LKGKILNTWEVSSDEVLASQEVHDISVAIGID--PDSDDLSQLRYGKICILADADSDGLH 497 L+GK+LN E + D++ + E+ +I +G+ + LRYG + I+ D D DG H Sbjct: 458 LRGKLLNVREATYDQIKKNTEIKNIKEILGLQHGKSYSTVDGLRYGSLMIMTDQDFDGSH 517 Query: 498 IATLLCALFVKHFRALVKHGHVYVA-LPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKG 556 I L+ + +L+K + V + P+ + G+EV T E E +G Sbjct: 518 IKGLIINYLDHFYPSLLKIPNFLVEFITPIIKATKGQEVRSFFTIPEFEQWKATGDGGRG 577 Query: 557 KPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRR 616 + +KGLG P +++E D + L TI ED ++D+ KK+++DR+ Sbjct: 578 W-TTKYYKGLGTSKPYEMKEYFRDMDRHMLSFDTIRPEDHD----LLDLAFNKKKADDRK 632 Query: 617 NWLQE 621 WL++ Sbjct: 633 EWLRQ 637 >UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota RepID=TOP2B_HUMAN Length = 1626 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 145/577 (25%), Positives = 244/577 (42%), Gaps = 49/577 (8%) Query: 65 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 + + ++G+G+PV H E V LI +L + + + +GG +G G + N S Sbjct: 137 ISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 196 Query: 125 RVEVNVRRDGQVYNIAFE-----NGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 + V + Y +F+ N K + ++ G+ T + F PD + F + Sbjct: 197 KFTVETA--CKEYKHSFKQTWMNNMMKTSEAKIKHFDGE--DYTCITFQPDLSKFKMEKL 252 Query: 180 S---VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD-GLNDYLAEAVNGLPTLPE 235 V+ +T A C GV++ F + Y D + D L E L + E Sbjct: 253 DKDIVALMTRRAYDLAGSCRGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 312 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 + N D L L E G S+VN I T +GG HV+ + ++ + E Sbjct: 313 ---LANERWD------VCLTLSEKG-FQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVV 362 Query: 296 EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 + +N GV + + + ++ +++P F QTKE ++ Q +F S Sbjct: 363 KKKN--KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMT-LQPKSFGSKCQLSEKF 419 Query: 356 LWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELF 415 N E + AQ ++ V+ G D + L Sbjct: 420 FKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 479 Query: 416 LVEGDSA-----GGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 L EGDSA G RDR + PL+GKILN E S +++ + E+++I +G+ Sbjct: 480 LTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGL 537 Query: 471 D-----PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 D++ L LRYGKI I+ D D DG HI LL ++ +L+KHG + + P Sbjct: 538 QYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITP 597 Query: 526 LYRIDLGKE--VYYALTE-EEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582 + + K+ +Y++ E +E + +E K K ++ +KGLG + +E D Sbjct: 598 IVKASKNKQELSFYSIPEFDEWKKHIENQKAWK----IKYYKGLGTSTAKEAKEYFADME 653 Query: 583 TRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 R++ ED DA + + +KK+ +DR+ WL Sbjct: 654 RHRILFRYAGPED----DAAITLAFSKKKIDDRKEWL 686 >UniRef50_UPI0000DA3D74 PREDICTED: similar to topoisomerase (DNA) II beta n=1 Tax=Rattus norvegicus RepID=UPI0000DA3D74 Length = 1445 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 145/577 (25%), Positives = 243/577 (42%), Gaps = 49/577 (8%) Query: 65 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 + + ++G+G+PV H E V LI +L + + + +GG +G G + N S Sbjct: 125 ISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 184 Query: 125 RVEVNVRRDGQVYNIAFE-----NGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 + V + Y +F+ N K + ++ G+ T + F PD F + Sbjct: 185 KFTVETA--CKEYKHSFKQTWMNNMMKTSEAKIKHFDGE--DYTCITFQPDLAKFKMEKL 240 Query: 180 S---VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD-GLNDYLAEAVNGLPTLPE 235 V+ +T A C GV++ F + Y D + D L E L + E Sbjct: 241 DKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPVNGFRSYVDLYVKDKLDETGVALKVIHE 300 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 + N D L L E G S+VN I T +GG HV+ + ++ + E Sbjct: 301 ---LANERWD------VCLTLSEKG-FQQISFVNSIATTKGGRHVDYVVDQVVGKLIEVV 350 Query: 296 EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 + +N GV + + + ++ +++P F QTKE ++ Q +F S Sbjct: 351 KKKN--KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENMT-LQPKSFGSKCQLSEKF 407 Query: 356 LWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELF 415 N E + AQ ++ V+ G D + L Sbjct: 408 FKAASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPKLDDANDAGGKHSLECTLI 467 Query: 416 LVEGDSA-----GGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 L EGDSA G RDR + PL+GKILN E S +++ + E+++I +G+ Sbjct: 468 LTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILNVREASHKQIMENAEINNIIKIVGL 525 Query: 471 D-----PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 D++ L LRYGKI I+ D D DG HI LL ++ +L+KHG + + P Sbjct: 526 QYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLKHGFLEEFITP 585 Query: 526 LYRIDLGKE--VYYALTE-EEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582 + + K+ +Y++ E +E + +E K K ++ +KGLG + +E D Sbjct: 586 IVKASKNKQELSFYSIPEFDEWKKHIENQKAWK----IKYYKGLGTSTAKEAKEYFADME 641 Query: 583 TRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 R++ ED DA + + +KK+ +DR+ WL Sbjct: 642 RHRILFRYAGPED----DAAITLAFSKKKIDDRKEWL 674 >UniRef50_C9DGI8 Gp60plus39 DNA topoisomerase subunit n=1 Tax=Deftia phage phiW-14 RepID=C9DGI8_9CAUD Length = 648 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 159/667 (23%), Positives = 272/667 (40%), Gaps = 86/667 (12%) Query: 4 TYNADAIEVLTGLEPVRRRPGMY---------TDTTRPNHLGQ----------------- 37 T + ++L+ + +R RPG Y D+ N GQ Sbjct: 22 TQDVSKYKMLSERDHIRIRPGRYLGDINTSLVKDSWTVNEQGQVERRDVQQNPAFTKLFD 81 Query: 38 EVIDNSVDEALAGHAKRVDVILHADQSLE-----VIDDGRGMPV--DIHPEEGVPA---- 86 E+I NS D +L K +++I D S E V D+G G+PV I EG P Sbjct: 82 EIITNSADFSLTADGKHLNII-RVDYSREHGCISVYDNG-GIPVVETIVDREGQPTKLWI 139 Query: 87 VELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK 146 ++I L +G F+++ S G +G G ++VN S R +V ++I + +G Sbjct: 140 PDMIFGFLRSGSNFNDEADSESAGQNGEGSTLVNVFSSRFDVETCDGKNKFSITYLDGMA 199 Query: 147 VQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 206 + V T + T+F P +S+ +T G E D I Sbjct: 200 NKTAPEVVAAQGATPFTRI------TYF--PEWSIMGMT-----------GQE----DWI 236 Query: 207 NNTEQRWCYQ-DGLNDYLAEAVNGLPTLPEKPFIGNFAG-------DTEAVDWAL-LWLP 257 +T +R C + N ++ NG P +K G+FA A W + L L Sbjct: 237 EDTLRRRCLEVAACNTHIRVYYNGKPVNVKK--FGDFAAMLDPVCVSESAPKWDVALSLS 294 Query: 258 EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCA 317 + G SYVN T GGTH+N + ++ +R E + + +I ++ Sbjct: 295 KNG-FKHYSYVNSTLTFVGGTHINHVMDKIVAEVRAHIESKT----KQDIKPAEILNQFQ 349 Query: 318 YVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQ 377 ++ ++ +P+++ QTKE L + + V FI + + +LL A Sbjct: 350 LTVAARINNPRYSSQTKENLITPVSSYNVKYSPSKEFIKAIIDSPMMKKLLEWAERRKAV 409 Query: 378 RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAI 437 + ++ A+K ++ + K T ++ LF+ EGDSA QA + + + Sbjct: 410 QDIKEAEKEIQDARKASFHHIPKYRPATNKNKAENILFVAEGDSALKPL-QAAKKPHHGL 468 Query: 438 MPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLH 497 PL+GK N ++ + + +E D+ +G+D + +RY + + DAD DG H Sbjct: 469 FPLRGKPDNVFDKTIRHLAKQKEFQDLIQILGLDLHQFNSDTIRYSALVVATDADLDGAH 528 Query: 498 IATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGK 557 I LL F + +R L+ G + + P+ + GKE TE+E E + K Sbjct: 529 IRGLLTVAFWRFWRPLIDEGFLRFLVTPIITVKQGKETIEFFTEQEYEDW--RAANPTAK 586 Query: 558 PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRN 617 + +KGLG + DP VQ D++ D + + +++ R++ Sbjct: 587 YTRKYYKGLGSWATEDMERFMNDPKYMVKVQPLTDEDVDN-----LVLAFDPSKADARKS 641 Query: 618 WLQEKGD 624 WL D Sbjct: 642 WLGLSAD 648 >UniRef50_UPI0001C4799C UPI0001C4799C related cluster n=1 Tax=unknown RepID=UPI0001C4799C Length = 184 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 113/195 (57%), Gaps = 29/195 (14%) Query: 15 GLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDG 71 GLE VR+RPGMY +T +HL E++DNS+DEALAG+A +++V++ D ++V D+G Sbjct: 1 GLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNG 60 Query: 72 RGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR 131 RG+PVDI + G PAVE+IL SVVNALS+ +EV V Sbjct: 61 RGIPVDIQEKMGRPAVEVILTS-----------------------SVVNALSQDLEVYVH 97 Query: 132 RDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDSPRFSVSRLTHVLKA 190 R+ +Y+ A++ G DL+ VGT K TGT + F D E F ++ ++ L ++ Sbjct: 98 RNETIYHQAYKKGVPQFDLKEVGTTDK--TGTVIRFKADGEIFTETTVYNYETLQQRIRE 155 Query: 191 KAVLCPGVEITFKDE 205 A L G++IT +DE Sbjct: 156 LAFLNKGIQITLRDE 170 >UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2-alpha (DNA topoisomerase II, alpha isozyme) n=1 Tax=Apis mellifera RepID=UPI0000DB6EE1 Length = 1407 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 154/650 (23%), Positives = 276/650 (42%), Gaps = 98/650 (15%) Query: 19 VRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI---LHADQSL-EVIDDGRGM 74 ++ PG+Y + E++ N+ D ++D I ++A+ ++ V ++G+G+ Sbjct: 65 IKYVPGLY-------KIFDEILVNAADNK--QRDPKMDTIKIEINAENNIISVWNNGKGI 115 Query: 75 PVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKR--VEVNVRR 132 PV IH EE + +I L + ++ + +GG +G G + N S R VE + Sbjct: 116 PVVIHKEENMYVPTMIFGHLLTSSNYDDEEEKVTGGRNGYGAKLCNIFSHRFTVETASKE 175 Query: 133 DGQVYNIAFENGE-KVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS------VSRLT 185 + + N + ++ G+ T V F PD + F +SR Sbjct: 176 YKKCLKQTWSNNMGSASEPRIKDFSGE--DFTKVIFSPDLSKFKMQSLDDDIIALMSRRA 233 Query: 186 HVLKAKA----VLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGN 241 + + A V G +I K+ DY+ + G P Sbjct: 234 YDIAASTRGVKVFLNGTKIPVKN--------------FKDYVDFYIKGREDDVGNPLKIV 279 Query: 242 FAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNIL 301 + + A+ +G + + S+VN I T +GG HV+ + + ++ + E + +N Sbjct: 280 YENCGPRWEVAIALSDKGFQQM--SFVNSIATTKGGRHVDHVTELIVKQLTETLKKKN-- 335 Query: 302 PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLS------SRQCA---AFVSGVVK- 351 GV + I + ++ + +P F QTKE ++ +C F++ V K Sbjct: 336 KAGVTIKPFQIKNHLWIFINCLINNPTFDSQTKENMTLQPKSFGSKCTLSEKFITSVTKI 395 Query: 352 ---DAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408 +A + W +A L ++ S QR+++ K+ + A K +CT Sbjct: 396 GIVEAVLTW--AKFKADSQLQKLGPKSKQRKLQGIPKLE----DANDAGTNKSLECT--- 446 Query: 409 LNRTELFLVEGDSA-----GGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 L L EGDSA G A RD+ I PL+GKILN E + ++L + E+++ Sbjct: 447 -----LILTEGDSAKTMAVSGLAAIGRDK--YGIFPLRGKILNVREATHKQILENAEINN 499 Query: 464 ISVAIGID-----PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGH 518 + +G+ +DL LRYGK+ I+ D D DG HI LL ++ +L+K Sbjct: 500 LIKILGLQYKKKYETREDLKTLRYGKMMIMTDQDQDGSHIKGLLINFIHHNWPSLLKLNF 559 Query: 519 VYVALPPLYRIDLGKEV--YYALTEEEK-EGVLEQLKRKKGKPNVQRFKGLGEMNPMQLR 575 V + P+ + G +V ++++ E K + E K ++ +KGLG + + Sbjct: 560 VEEFITPIVKATKGNQVLSFFSMPEFNKWKSETENFHTYK----IKYYKGLGTSTAKEAK 615 Query: 576 ETTLDPNTRRLVQLTID-DEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD 624 E + TR ++ D D+DDQ + M +KK + R++WL D Sbjct: 616 E-YFENMTRHRIRFRYDGDQDDQN----IIMAFSKKCVDQRKDWLMNHMD 660 >UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEE2_VANPO Length = 1404 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 160/659 (24%), Positives = 284/659 (43%), Gaps = 113/659 (17%) Query: 19 VRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHA-KRVDVILHADQSL-EVIDDGRGMPV 76 V+ PG++ + E++ N+ D + + KR+DV ++ +++L E+ +DG+G+P+ Sbjct: 54 VKIVPGLF-------KIFDEILVNAADNKVRDPSMKRIDVNINPEENLIEIKNDGKGIPI 106 Query: 77 DIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKR--VEVNVRRDG 134 +IH +E + ELI L + + + +GG +G G + N S +E G Sbjct: 107 EIHDKEKIYIPELIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADPSTG 166 Query: 135 QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRL----THVLKA 190 + Y +E+ + + + T V F PD RF + +L V++ Sbjct: 167 KKYIQRWEDNMNTCHPPKITSYKNSTSYTKVSFKPD-----LKRFKMEKLDDDVVGVMRR 221 Query: 191 KAVLCPGVEITFKDEINNTEQRWCYQDG----LNDYLAEAVNGLPTLPEKPFI--GNFAG 244 + G + +D IN Y DG + ++ + L +L +K G Sbjct: 222 RVYDING---SVRD-IN------VYLDGKPLKIRNFKSYVELYLKSLEKKKLTESGESTE 271 Query: 245 D-------TEAVD--WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 D E V+ W + + S+VN I T GGTHVN + ++ + E Sbjct: 272 DLQTPTILYEKVNDRWEVAFSSSEASFQQVSFVNSIATTSGGTHVNYITDQIVKKVSEAI 331 Query: 296 EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR------QCA---AFV 346 + + + I + ++ +++P F QTKE+L++R +C F+ Sbjct: 332 KKK----SKKTVKPFQIKNNMFIFINSLIENPAFTSQTKEQLTTRVRDFGSKCELSNVFI 387 Query: 347 SGVVKDAFILWL----NQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLA 402 + ++K F + NQN Q A + S R++R +T P KL Sbjct: 388 NKIMKTDFFDKILDVANQNDQNA-----LKKSDGTRKIR---------ITEYP----KLE 429 Query: 403 DCT---AQDLNRTELFLVEGDSAGGSAK---QARDREYQAIMPLKGKILNTWEVSSDEVL 456 D ++ ++ L L EGDSA A R+Y PL+GK+LN E S+D++ Sbjct: 430 DANKAGTKEGHKCTLILTEGDSALSQAVLGLTVVGRDYFGCYPLRGKMLNVREASADQIN 489 Query: 457 ASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV 514 + E+ I +G+ +D LRYG + I+ D D DG HI L+ F L+ Sbjct: 490 KNAEIEAIKKIMGLQHKKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFLETSFPGLL 549 Query: 515 K-HGHVYVALPPLYRIDLGKE-----VYYALTEEEK----EGVLEQLKRKKGKPNVQRFK 564 + + P+ ++ + K +Y + + EK EG K K +K Sbjct: 550 NIPEFLQEFITPIIKVKISKPRKQTIQFYNIPDYEKWRDEEGQNCTWKHK-------YYK 602 Query: 565 GLGEMNPMQLRE--TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 GLG + RE LD + + QL EDD++ ++++ +KK+++DR+ WL++ Sbjct: 603 GLGTSLGQEFREYFADLDRHLKIFHQL---QEDDKK---LIELAFSKKKADDRKEWLRQ 655 >UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae RepID=A4HGT2_LEIBR Length = 1501 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 141/596 (23%), Positives = 255/596 (42%), Gaps = 43/596 (7%) Query: 41 DNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 DN V + L RV + + V ++G G+P+ H E + E+I L + Sbjct: 70 DNKVRDPLGQTVIRV---WMTEDYVRVYNNGEGIPIQRHREHDLWVPEMIFGHLLTSSNY 126 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCGK 158 ++ + +GG +G G + N SK+ EV R + + + + N D ++ C Sbjct: 127 DDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWTNNMLQHDDPIIVPCES 186 Query: 159 RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG 218 + T V F+PD F +FS L + + + + T K +N+ E+ C Sbjct: 187 ADY-TMVTFYPDFARFHVDKFSEDILLMMKRRVYDVAGCTDKTLKCFLND-ERIACTT-- 242 Query: 219 LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGT 278 E V+ PT+ E+ +++ + W L S+VN I T +GGT Sbjct: 243 ----FPEYVDLYPTMGEERKAASYSRANDR--WELCVRVSNIGPQQVSFVNSIATTRGGT 296 Query: 279 HVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLS 338 HV + ++ + E + + + + I ++ + +P F QTKE L+ Sbjct: 297 HVKYIMDQIVTKVVE----QAKKKKKTDVKSHMIRPHIFLFVNCLIDNPSFDSQTKETLN 352 Query: 339 SRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALP 398 + + + + ++ + ++ N E EMA S + M + K +K G Sbjct: 353 TVKSKFGSTCDLPNSIVDYI-MNSGIVERSVEMANSKIAKEMASKIKSSDRKQIMGIPKL 411 Query: 399 GKLADCTAQDLNRTELFLVEGDSAG---GSAKQARDREYQAIMPLKGKILNTWEVSSDEV 455 + + +R L L EGDSA + +DR+Y + PL+GK LN E S ++ Sbjct: 412 DDANEAGGKHGHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVREASLKKL 471 Query: 456 LASQEVHDISVAIGID--PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRAL 513 A +E+ + +G+D ++ LRYG + I++D D DG HI LL + L Sbjct: 472 AACEEIQCVMKIMGLDIRQKYENTDGLRYGHLMIMSDQDHDGSHIKGLLINFIHCFWPNL 531 Query: 514 VK-HGHVYVALPPLY------RIDLGKEV-YYALTE--EEKEGVLEQLKRKKGKPNVQRF 563 ++ G + + P+ R GK + ++++ + E K+ + + L + ++ + Sbjct: 532 LRVPGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLSNYQ----IRYY 587 Query: 564 KGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 KGLG + RE + + RL + E DQ + + M K R EDR+ W+ Sbjct: 588 KGLGTSGAEEGREYFENIDRHRLSFV----EQDQSEEDRIVMAFGKDRVEDRKEWI 639 >UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS115 RepID=C4R475_PICPG Length = 1344 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 162/661 (24%), Positives = 277/661 (41%), Gaps = 66/661 (9%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ-------EVIDNSVDEALAGHAKRVDVIL 59 +D + L+ LE + +RP Y + + Q E ++ V + G K D IL Sbjct: 64 SDQYQKLSQLEHILKRPDTYIGSVEKHESEQWIYNKETESMERKVVSIVPGLFKIFDEIL 123 Query: 60 HADQSLEVIDDG-RGMPVDIHPEEGVPAV-----ELILCRLHAGGKFSNKNYQFSGGLHG 113 ++ D + + V I PEE + V ELI L +++ + +GG +G Sbjct: 124 VNAADNKIRDPSMKNIEVTIKPEENLIEVKNDGKELIFGNLLTSSNYNDDQKKVTGGRNG 183 Query: 114 VGISVVNALSKR--VEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDE 171 G + N S VE + G++Y + D V+ + K T V F PD Sbjct: 184 YGAKLCNIFSTEFIVETYDKSSGKLYTQRWSQNMGKTDKPVIKSIKKATEYTKVSFRPDL 243 Query: 172 TFFDSPRFSVSRLTHVLKAKAVLCPGV-EITFKD-----EINNTEQRW-CYQDGL---ND 221 F+ L + + LC V +I+ K +I N +Q Y L ND Sbjct: 244 AKFNMTELDEDILGVLRRRVFDLCGSVRDISVKLNGEKLKIRNFKQYVEMYVKALEHKND 303 Query: 222 YL-AEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHV 280 + E + LP T W + + S+VN I T GGTHV Sbjct: 304 PIKTEDSSLLPPPSSSSPSQTIVYQTLNDRWEIAFAVSDSTFNQVSFVNSIATTSGGTHV 363 Query: 281 NGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR 340 N + ++ + + + +N + + I + ++ +++P F QTKE+L++R Sbjct: 364 NFIADQIVKKIEKEIKTKN---KKAMIKPFQIKNNMFLFINCLVENPAFTSQTKEQLTTR 420 Query: 341 --QCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALP 398 Q + V D L + A L ++A +A + ++ + ++T P L Sbjct: 421 ASQFGGKKTEVPDDFIKKILRTGIVDAIL--DIAAMNADKALKKNDGSRKNRITGYPKLE 478 Query: 399 GKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEV 455 T + T L L EGDSA A R+Y + PL+GK+LN E S+D++ Sbjct: 479 DANKAGTKEGYKCT-LILTEGDSASSLAVAGLAVVGRDYYGVYPLRGKMLNVREASADQI 537 Query: 456 LASQEVHDISVAIGI----DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 + + E+ I +G + ++++ LRYG I I+ D D DG HI L+ F Sbjct: 538 MKNAEIQAIKQIMGFQHKKNYTPENINSLRYGHIMIMTDQDHDGSHIKGLIINFLESSFP 597 Query: 512 ALVKHGHVYVA-LPPLYRIDL--GKEV-----YYALTEEE--KEGVLEQLKRKKGKPNVQ 561 L+K + + + P+ ++ + G E +Y++ E E +E E K+K Sbjct: 598 GLLKVPNFLLEFITPIVKVTITSGPEKRKVIPFYSMPEYEAWREQNTESFKQK------- 650 Query: 562 RFKGLGEMNPMQLRE--TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 +KGLG ++RE + LD + + L D +D+ +KK+++DR+ WL Sbjct: 651 YYKGLGTSLAEEMREYFSQLDKHMKTFHALQDVDP------GFIDLAFSKKKADDRKEWL 704 Query: 620 Q 620 + Sbjct: 705 R 705 >UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=A8Q6X4_BRUMA Length = 1178 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 127/589 (21%), Positives = 247/589 (41%), Gaps = 58/589 (9%) Query: 63 QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNAL 122 ++ + ++GRG+PV+IHP EG+ +I L + + + GG +G G + N Sbjct: 147 NTISIWNNGRGIPVEIHPREGIYVPTMIFGTLFTSSNYDDSELKIVGGRNGFGAKLCNIF 206 Query: 123 SKR--VEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF----- 174 S VE ++ G + + N V D + + T V F PD + F Sbjct: 207 STEFSVETCTKQSGLRFFQCWRNNMNDVDDPIISDASTNASDYTCVTFKPDLSKFKLSTL 266 Query: 175 --DSPRFSVSRLTHV---LKAKAVLCPGVEIT---FKDEINNTEQRWCYQDGLNDYLAEA 226 D+ + + R+ + L V G +I FKD Y + Y E+ Sbjct: 267 DEDTIQVMIRRIVDIAGTLDGVNVFLNGTKIEVSGFKD----------YVKLFSTYTGES 316 Query: 227 VNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 V T+P + + W + S+VN I T++GG HV+ + Sbjct: 317 VEN-STVPSYCSVND--------RWQIAVARSDTGYNHISFVNNINTLKGGRHVDYIVNQ 367 Query: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 ++ ++ R + + SA I +R ++ +++P F Q+KE L++ Sbjct: 368 IVSRLKHEINQRYGCDKFI--SAHQIKNRLHIFVNSLIENPAFESQSKEYLTTSVKNFGS 425 Query: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTA 406 + +V ++F ++ ++++ + +Q+ + + + + L L AD Sbjct: 426 TCIVPESF---YENFIKDSDIIHHLLCDISQQHTTSLNRSMNRSLWDLSKLEDA-ADAGT 481 Query: 407 QDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 ++ L + EGDSA A R+ + P++GK+ N + + + + E+ Sbjct: 482 KNGCNCTLIITEGDSAKALAVAGLAVIGRKQYGVFPIRGKLTNVRGMDAKMAVENAEISA 541 Query: 464 ISVAIGID-----PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGH 518 + +G+ + L LRYG++ I+ D D DG HI L+ ++ +L+K + Sbjct: 542 LVRILGLKFGENYSSHEKLKSLRYGRLLIMTDQDPDGSHIKGLIVNFLHVYWPSLLKANY 601 Query: 519 VYVALPPLYRIDLGKEV--YYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576 V + PL + G ++ +Y+ + EK K +++ +KGLG + + RE Sbjct: 602 VSYFITPLLKAKRGSDIKSFYSTADYEK---WRAENPDSVKYSIKYYKGLGTSSAKEARE 658 Query: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 D R V D + +D +++ AK +++DR+ W+ E + Sbjct: 659 YFNDIE-RHTVNFIY---DGKISDESIELAFAKNKADDRKVWIAESSKL 703 >UniRef50_Q76Z86 Topoisomerase II large subunit n=1 Tax=Aeromonas phage Aeh1 RepID=Q76Z86_9CAUD Length = 613 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 172/609 (28%), Positives = 257/609 (42%), Gaps = 88/609 (14%) Query: 38 EVIDNSVDEALAG---HAKRVDVILHADQSLEVIDDGRGMP--VDIHPEE-GVPAVELIL 91 EVIDNSVDEA+ HA +++V++ D + V D+GRG+P + + PE VP Sbjct: 53 EVIDNSVDEAIRTNFEHANQIEVVI-KDNQVSVKDNGRGLPQGMVVTPEGVEVPLPLAAW 111 Query: 92 CRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQ 151 R AG FS G +GVG ++ N S V G N D Sbjct: 112 TRARAGSNFSADRKTI--GKNGVGSALTNFFSDSF---VGETGNGTNTVTVRCTNNADEV 166 Query: 152 VVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRL----THVLKAK----AVLCPGVEITFK 203 T + GT+V F PD T RF V +L V++++ AV P ITFK Sbjct: 167 SYTTKAGKFKGTNVTFVPDFT-----RFGVFQLDEDFEQVIQSRLLTLAVNFP--PITFK 219 Query: 204 DEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGD--TEAVDWALLWLPEGGE 261 Y + V G + F F GD + D L+ E Sbjct: 220 ------------------YNGKKVEGKFS----KFAAQF-GDVVSHNDDNVSLFFATSEE 256 Query: 262 LLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLS 321 S+VN + T QGG HV G+ L D E ++ R K+ + ++ Sbjct: 257 YRQLSFVNGVHTKQGGNHVYGVLDSLSD------ELIPMIKRQHKIEINKARIKECLLIG 310 Query: 322 VKMQD---PQFAGQTKERLSSRQCAAFVSGVVKDAFIL---WLNQNVQAAELLAEMAISS 375 + +++ P++ GQTKERLSS ++D L L + + + + I+S Sbjct: 311 LFIRNLVAPKYDGQTKERLSSPWAQ------IRDHMNLDYKALARKILKTPEVIDPIIAS 364 Query: 376 AQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR--TELFLVEGDSAGGSAKQARDRE 433 A + AA K K A L R T LFL EGDSA G + R+ E Sbjct: 365 ALAKKEAADKAAATKAQKKAKKANVAKHVAAAGLGRLKTMLFLAEGDSAIGPFTRFRNEE 424 Query: 434 YQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADS 493 Q PL+GK+LN W + EVL ++E+ D+ + ++ S + Y I I+ DAD Sbjct: 425 TQGSYPLRGKMLNVWNLPDHEVLKNKEIADLLGILNVELRSKEAPA--YTDIAIMTDADQ 482 Query: 494 DGL-HIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK 552 DG IA L A F K + + G +++ P Y GK+ ++ + +E K Sbjct: 483 DGKGSIAMLAIAFFYKFWPHWFEQGRIHIVRTPEYISTNGKKTDWSYSRDEFRS-----K 537 Query: 553 RKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLV--QLTIDDEDDQRTDAMMDMLLAKK 610 + GK + KGLG + ++ + LV Q+ IDD+ T +++ML Sbjct: 538 KFDGKWTHRHIKGLGSLT-VEGDDCEYKQCIENLVLEQVVIDDQ----TPELLEMLFGDD 592 Query: 611 RSEDRRNWL 619 + R+ WL Sbjct: 593 EHK-RKQWL 600 >UniRef50_C8XUB6 Topoisomerase II large subunit n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUB6_9CAUD Length = 637 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 134/529 (25%), Positives = 216/529 (40%), Gaps = 49/529 (9%) Query: 38 EVIDNSVDEALAGHAK---RVDVILHADQSLEVIDDGRGMPVDIH--PEEGVPAVELILC 92 E+I N VD + K + V + ++ D G+PV H E +P E++ Sbjct: 66 EIITNCVDHSKTPEGKSLTEITVTVSPMNGQIIVADNGGIPVVKHGVTNEWLP--EMLFG 123 Query: 93 RLHAGGKFSNK----NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQ 148 L+AG F+++ N Q SGG +G G S+VN SK V + Y FE+ + Sbjct: 124 SLYAGSNFNDEDEEYNNQKSGGQNGEGASLVNVFSKWFRVATSDGKKSYAQLFEDNMSKK 183 Query: 149 DLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN 208 V+ K GT++ + PD + L + + +A K +N Sbjct: 184 SNPVISNTPKE-FGTTIAWIPDYARLGVKGLDQNNLLMIYR-RAFEVAACNPRLKVVLNG 241 Query: 209 TEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYV 268 + R DY F A D E+ +W++ P G + SYV Sbjct: 242 KQIRIDRFGHFVDY---------------FHAGSAVD-ESGEWSVAVAPSSGTFMHASYV 285 Query: 269 NLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVK-----LSAEDIWDRCAYVLSVK 323 N I T GG HV+ + ++ A+R P+ VK L I + + ++ Sbjct: 286 NSIATHIGGPHVDYVADQIVAAIR---------PQLVKKFKTELKPAVIKNHMSLFIAAD 336 Query: 324 MQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQA--AELLAEMAISSAQRRMR 381 + +P+F QTKER+++ S D I + V A ++ LA + Sbjct: 337 INNPRFDSQTKERMTTPVSQFGTSYKPSDKLIRKALEFVMAGLSKELASLRNEQDDAEFE 396 Query: 382 AAKKVVRKKLTSGPALPGKLADCTAQ-DLNRTELFLVEGDSAGGSAKQARDREYQAIMPL 440 AKK + K+ K TA+ D + L L EGDSA ARD + + PL Sbjct: 397 KAKKDISKRDYREIE---KYYPATARGDRSGCSLLLTEGDSASNPILNARDTKKIGLFPL 453 Query: 441 KGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIAT 500 +GK +N +V+ ++E ++ G L RY + + DAD DG+HI Sbjct: 454 RGKFINCLNAPRTKVMNNEEFKNLCTIHGGAVPGQPLDISRYPQTVVATDADDDGIHIRG 513 Query: 501 LLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLE 549 LL L+ ++ V+ G + + P R+ GK ++ + E E L+ Sbjct: 514 LLITLYCTYWPEYVRQGRLKLLRTPYMRVWCGKVMHEFMNNAEYEEFLK 562 >UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurelia RepID=A0C0L0_PARTE Length = 1274 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 144/587 (24%), Positives = 251/587 (42%), Gaps = 72/587 (12%) Query: 65 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 + + +DG +PV+IH E + ELI G F + + GG +G G + N S Sbjct: 91 ITIKNDGLPIPVEIHKEYQIYVPELIFGVFLTGSNFDDSEKRVVGGRNGYGAKLTNVYST 150 Query: 125 RVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRL 184 + V + + + N + + + K++ S+ + P D RF + + Sbjct: 151 EFTLEVCDGNNYFKLVWNNNMSNKQIPTIKQL-KKDPYVSISYKP-----DYKRFGMKEI 204 Query: 185 ---THVLKAKAVL-CPGVEITFKDEINNTEQRWCYQDGLNDYLAE---AVNGLPT----- 232 T L + V G+ Y +N YL + +N Sbjct: 205 EADTQALLTRRVYDLAGI----------------YGSKINVYLNDEKIKINSFQKYVDLY 248 Query: 233 LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVN----GLRQGLL 288 LP + I F D W ++ + S+VN I T +GGTHVN + Q + Sbjct: 249 LPTEGAIKIFDKDMTTPRWEVVVSYSPTQFQHVSFVNAIYTAKGGTHVNYVTDKIIQEIQ 308 Query: 289 DAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + M +Y++I + ++ + +W ++ + +P F QTKE ++++ + G Sbjct: 309 NEMNNNKKYKSIEVQKYQIK-QSLW----VFINCLIDNPTFDSQTKENMTTK--VSEFGG 361 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL--TSGPALPG--KLADC 404 ++ F + + A + ++ + Q+ A + K+L T L G KL D Sbjct: 362 SSEEKF--KVTEKFSKALIKTDIIETIFQQAKAKADAKLNKQLKGTKTGRLHGIEKLDDA 419 Query: 405 TAQDLNRTE---LFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDEVLAS 458 +E L L EGDSA A D R+ + PLKGK+LN E S ++L + Sbjct: 420 NDAGKKNSELCTLILTEGDSAKALAMAGIDIVGRDRYGVFPLKGKLLNVREASLKQILQN 479 Query: 459 QEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHF-RALVK 515 +E+ ++ IG+ + DL LRYG + I+ D D DG HI L+ F+ HF +LVK Sbjct: 480 EEIENLIKIIGLQKERQYTDLKSLRYGSVMIMTDQDIDGSHIKGLIIN-FIHHFWPSLVK 538 Query: 516 H-GHVYVALPPLYRIDLGKEV--YYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPM 572 + G + + PL + G + ++ + + K E +K K ++ +KGLG + Sbjct: 539 YSGFLKEFVTPLIKATKGNQTIPFFTVQDFNKFAQEEDIKNWK----IKYYKGLGTSDDQ 594 Query: 573 QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + +E + T +Q D D+ +D+ KK++ DR+ WL Sbjct: 595 EAQEYFKNLRT-HTIQFRY---DGDDDDSSIDLCFNKKKANDRKQWL 637 >UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota RepID=TOP2A_HUMAN Length = 1531 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 140/582 (24%), Positives = 250/582 (42%), Gaps = 59/582 (10%) Query: 65 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 + + ++G+G+PV H E + LI +L + + + +GG +G G + N S Sbjct: 116 ISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDDEKKVTGGRNGYGAKLCNIFST 175 Query: 125 R--VEVNVRRDGQVYNIAF-ENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 + VE R +++ + +N + ++++ G+ T + F PD + F Sbjct: 176 KFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGE--DYTCITFQPDLSKFKMQSLD- 232 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEINNTEQ-----RWCYQDGLNDYLAEAVNGLPTLPEK 236 + ++ +A G K +N + R L D L E N L + E+ Sbjct: 233 KDIVALMVRRAYDIAGSTKDVKVFLNGNKLPVKGFRSYVDMYLKDKLDETGNSLKVIHEQ 292 Query: 237 PFIGNFAGDTEAVDWAL-LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 + + W + L + E G S+VN I T +GG HV+ + ++ + + Sbjct: 293 --VNH--------RWEVCLTMSEKG-FQQISFVNSIATSKGGRHVDYVADQIVTKLVDVV 341 Query: 296 EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 + +N GV + A + + ++ +++P F QTKE ++ + + + + + FI Sbjct: 342 KKKN--KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTLQPKSFGSTCQLSEKFI 399 Query: 356 LWLNQNVQAA------ELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 409 +AA E + AQ ++ V+ G D ++ Sbjct: 400 -------KAAIGCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLDDANDAGGRNS 452 Query: 410 NRTELFLVEGDSA-----GGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 L L EGDSA G RD+ + PL+GKILN E S +++ + E+++I Sbjct: 453 TECTLILTEGDSAKTLAVSGLGVVGRDK--YGVFPLRGKILNVREASHKQIMENAEINNI 510 Query: 465 SVAIGID-----PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHV 519 +G+ D D L LRYGKI I+ D D DG HI LL ++ +L++H + Sbjct: 511 IKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWPSLLRHRFL 570 Query: 520 YVALPPLYRIDLGKE--VYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRET 577 + P+ ++ K+ +Y+L E E E KK K V+ +KGLG + +E Sbjct: 571 EEFITPIVKVSKNKQEMAFYSLPEFE-EWKSSTPNHKKWK--VKYYKGLGTSTSKEAKEY 627 Query: 578 TLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 D R +Q +D DA + + +KK+ +DR+ WL Sbjct: 628 FADMKRHR-IQFKYSGPED---DAAISLAFSKKQIDDRKEWL 665 >UniRef50_B1N7R8 Gyrase b (Fragment) n=1 Tax=uncultured bacterium RepID=B1N7R8_9BACT Length = 366 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 116/369 (31%), Positives = 180/369 (48%), Gaps = 56/369 (15%) Query: 88 ELILCRLHAGGKFSNKNY-QFSGGLH-GVGISVVNALSKRVEVNV-RRDGQVYNIA-FEN 143 E+I+ LHAGGKF + +Y + SGGL GVG+SVVNALS ++ + + R GQV+ + + Sbjct: 1 EVIMTVLHAGGKFDDNSYTRVSGGLQDGVGVSVVNALSSKLHLIILHRAGQVHEKQEYHH 60 Query: 144 GEKVQDLQVVGTCGKRNT-GTSVH-FWPDETFFDSPR----FSVSRLTH-VLKAKAVLCP 196 G+ L+V+ G+ ++ GT+V+ FWP F F+V L +L+ + L Sbjct: 61 GDTQYPLRVL--IGETDSSGTTVNRFWPSGLTFSHGECRTIFNVEILARRLLRELSFLNA 118 Query: 197 GVEITFKDEINNTEQRWC-YQDGLNDYLAEAVNGLPTLPEKPF----------------- 238 GV I +DE N E + Y+ GL++++ +N T + F Sbjct: 119 GVRIVLRDERINLEHVYAXYEGGLSEFVKYFINEGKTHLNEIFHFXTADTENGIGVKYIN 178 Query: 239 --------IGNFAGDTE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLR--Q 285 I +F D + AV+ AL W E + + N IP GGTH+ G R Q Sbjct: 179 EGKNHLNEIFHFTADADNGIAVEVALQWNDSYQENV-RCFTNNIPQKDGGTHLAGFRALQ 237 Query: 286 GLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAA 344 L + ++ E NIL + V ++ +D + ++SVK+ DP+F+ QTKE+L S + Sbjct: 238 ALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKP 297 Query: 345 FVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA-----AKKVVRKKLTSGPAL-- 397 V + F +L +N QAA+ +A I +A+ R A + R+K A Sbjct: 298 AVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREGSYMTRRKSALDIAYPI 357 Query: 398 ---PGKLAD 403 PGKLAD Sbjct: 358 GLPPGKLAD 366 >UniRef50_Q56C43 Gp60plus39 DNA topoisomerase subunit n=3 Tax=T4-like viruses RepID=Q56C43_9CAUD Length = 630 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 159/639 (24%), Positives = 265/639 (41%), Gaps = 100/639 (15%) Query: 13 LTGLEPVRRRPGMYTDT-TRPNH----LGQ---------------EVIDNSVDEALAGHA 52 L+ + +R+RP MY + R H +G+ E++DNS+DEA+ Sbjct: 30 LSDRDHIRKRPNMYVGSVNREAHERFIMGKFRKVEYVEGLVKIINEILDNSIDEAIRTDF 89 Query: 53 KRVDVI-LHADQSLEVI-DDGRGMPVD-IHPEEG--VPAVELILCRLHAGGKFSNKNYQF 107 K + I + D +L I D+GRG+P D + EG VP +G F ++N + Sbjct: 90 KFANRIEVKIDHNLVTISDNGRGIPQDDVRTPEGKIVPKPVAAWTMAKSGSNFDDEN-RV 148 Query: 108 SGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHF 167 + G++GVG + N S + I +G + D + T + GT+V F Sbjct: 149 TMGMNGVGSFLTNCYSSIFIGETSNGKRKVTINCTDGAQNMDYR---TSPTKEQGTTVKF 205 Query: 168 WPDETFFDSPRF---SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLA 224 PD + F + + L A AV P V+ T+ E Sbjct: 206 TPDFSIFGVDGIDEETKEVIKDRLMALAVAFPSVKFTYNGE------------------- 246 Query: 225 EAVNGLPTLPEK-PFIGNFAGDT------EAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 TLP K G GD+ + + L +G +S+VN + T GG Sbjct: 247 -------TLPNKFAMYGAMYGDSTITQTNNKISFILASTEDG--FKQKSFVNGLDTKNGG 297 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSV-KMQDPQFAGQTKER 336 HV+ + G+ + + ++ +++ + + V+ + P F QTKE+ Sbjct: 298 VHVDCMIDGIYAELEPMIKKKH----AIEIPKARVKECLTLVVFLHNFNAPAFDSQTKEK 353 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA 396 L++ A + + Q + +E++ + I SA R +AA+ K Sbjct: 354 LTN--TAGEFNNHAGLNYKKIAKQIMDTSEIITPI-IESALIRKQAAEAAAITKAKKKAK 410 Query: 397 LPGKLADCTAQDLN----RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSS 452 A ++ T LFL EGDSA G + R+ E Q PL+GK LNTW +S Sbjct: 411 KAKIAKHVPASGIDTDGVETTLFLTEGDSAVGQFIECRNEETQGAFPLRGKPLNTWGMSF 470 Query: 453 DEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRA 512 ++L ++E+ ++ + + P D S++ Y I I+ DAD DG I TLL A F + Sbjct: 471 TDILKNKELFELMAILNLHP--GDSSEMAYDNIGIMVDADVDGGDILTLLIAFFSRWPEL 528 Query: 513 LVKHGHVYVALPPLY-RIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNP 571 K Y+ P + +I ++ +Y++ + R K K V+ KGLG + Sbjct: 529 FEKKKIRYIRTPIIIAKIGKDEKWFYSMDDFVP-------FRDKAK-EVRYIKGLGSLRK 580 Query: 572 M--------QLRETT--LDPNTRRLVQLTIDDEDDQRTD 600 QL+ T L + + +++L +E D R D Sbjct: 581 SDYDRVLGDQLKYDTIVLGDDYKDVLELCFGEESDPRKD 619 >UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms RepID=TOP2_PENCH Length = 1587 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 118/482 (24%), Positives = 199/482 (41%), Gaps = 63/482 (13%) Query: 65 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 + V ++GRG+P+++H +E + ELI L + + + +GG +G G + N S Sbjct: 151 ISVWNNGRGIPIEMHSKEKMYVPELIFGHLLTSSNYDDTQMKVTGGRNGFGAKLCNVFST 210 Query: 125 R--VEVNVRRDGQVYNIAF-ENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 +E R + Y + EN K+ ++ T K T V F PD +F + Sbjct: 211 EFTIETQDSRQKKKYKQTWTENMTKMGKAKI--TDAKGADYTKVTFKPDYA-----KFGM 263 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNG--LPTLPEKPFI 239 + + D+ +R Y +A +NG +P K ++ Sbjct: 264 TGMD------------------DDFEALVKRRVYDLAGTAKVAVKLNGSRIPIRNFKMYM 305 Query: 240 GNF-------------AGDTEAVD------WALLWLPEGGELLTESYVNLIPTMQGGTHV 280 + AG E + W + + G S+VN I GGTHV Sbjct: 306 EMYTKAIRRERGDMGPAGKNEIITCSPDPRWEVGFAVSDGAFQQVSFVNSIAITSGGTHV 365 Query: 281 NGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR 340 N + + + E + +N G L I + ++ + +P F QTKE+L+++ Sbjct: 366 NYIADQICSKLAEQVKKKN--KNGATLKPAQIRNHIFIFVNALIVNPAFTSQTKEQLTTK 423 Query: 341 QCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKV--VRKKLTSGPALP 398 Q V+++ F + + E++ + + Q+ + KK R+ + P L Sbjct: 424 QSQFGSKCVLEEDFY----KKILKTEVMTNILHFAQQKADQMLKKTDGGRRSRMNNPKLT 479 Query: 399 GKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEV 455 T + + T L L EGDSA G A R + + PL+GK+LN + S D++ Sbjct: 480 DANKAGTKEGHHCT-LILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDASFDQI 538 Query: 456 LASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRAL 513 +QE+ +I IG+ + D LRYG + I D D DG HI LL F +L Sbjct: 539 AKNQEIQNIKNFIGLQHKKEYTDTRGLRYGHLMITTDQDHDGSHIKGLLINFLQAQFPSL 598 Query: 514 VK 515 +K Sbjct: 599 LK 600 >UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5CQG8_CRYPV Length = 1797 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 101/389 (25%), Positives = 186/389 (47%), Gaps = 48/389 (12%) Query: 258 EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCA 317 +GG+ S+VN I T++GGTH++ + L++A+ + + +N G+ + + + + Sbjct: 425 DGGQFQHVSFVNSICTIKGGTHISYVLDPLINAILKKVQTKN--KGGMDVKSNHVKNHIW 482 Query: 318 YVLSVKMQDPQFAGQTKERLSSRQCAAF----------VSGVVKDAFILWLNQNV-QAAE 366 + + +P F QTKE L+++ + F ++ VVK + + +NV A+ Sbjct: 483 IFIKCLIVNPSFDSQTKETLTTK-VSKFGSVCTLSEKTINSVVKSSIV----ENVLMWAQ 537 Query: 367 LLAEMAISSAQRRMRAAKK-VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGS 425 L M + +++M++ +K V +L P L + + L L EGDSA S Sbjct: 538 LKQSMEL---KKKMKSNQKNTVTSRLLGIPKLED-ANEAGGPHSKKCTLILTEGDSAKTS 593 Query: 426 AKQARD---REYQAIMPLKGKILNTWEVSSDEVLASQEVHDI--SVAIGIDPDSDD-LSQ 479 R+Y + PL+GK+LN E S + + + E+ +I + +GI D+ Sbjct: 594 CLAGLSIVGRDYFGVFPLRGKLLNVREASFKQQIGNVEIQNILKILGLGIGQKYDNGPVN 653 Query: 480 LRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKE--VY 536 LRYG + ++ D D DG HI L+ L ++ +L+ G + + P+ + G + Sbjct: 654 LRYGSLMLMTDQDHDGSHIKGLIINLIHYYWPSLIHFRGFLKQFVTPIVKAKKGSNEISF 713 Query: 537 YALTEEEKEGVLEQLKRKKGKPNV-----QRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 + L E E+ RK N+ + +KGLG ++ +E + + Sbjct: 714 FTLYEYEQW-------RKNNSSNLNGWRFKYYKGLGTSTDLEFKEYFTKIENHSIEFDWM 766 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 DD+DD+ +DM +KKR+EDR+NW++ Sbjct: 767 DDQDDE----AIDMAFSKKRTEDRKNWIE 791 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 2/114 (1%) Query: 63 QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNAL 122 + + V +DG G+P++IH E V ELI L + + + +GG +G G + N Sbjct: 127 KEITVFNDGEGIPIEIHREHQVYVPELIFGHLLTSDNYDDNEDRVTGGRNGFGAKLTNIF 186 Query: 123 SK--RVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF 174 SK +VE G+++ + + + + + + + + F PD + F Sbjct: 187 SKEFKVECGDNNTGRIFKMTWYDNMSKKSEENIKENYSGKSYVKITFKPDLSRF 240 >UniRef50_C0F8C8 DNA gyrase, B subunit (Fragment) n=1 Tax=Wolbachia endosymbiont of Muscidifurax uniraptor RepID=C0F8C8_9RICK Length = 288 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 51/111 (45%), Positives = 75/111 (67%), Gaps = 2/111 (1%) Query: 421 SAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG--IDPDSDDLS 478 SAGG+AKQ R+R+ QA++ L+GKILN VS D + +S E+ + AIG I + D+ Sbjct: 1 SAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSEHFDIE 60 Query: 479 QLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 + RY KI I+ DAD DG HI TL+ F +H R +++ G++Y+A PPLY++ Sbjct: 61 KARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKV 111 >UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii RepID=B9PK68_TOXGO Length = 1688 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 106/408 (25%), Positives = 183/408 (44%), Gaps = 60/408 (14%) Query: 258 EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCA 317 +GG+ S+VN I T +GGTHV+ + + LL A+ + +N G+++ A + Sbjct: 368 DGGQFQQVSFVNSICTTKGGTHVSHVIEPLLAAIVKKANTKN--KGGMEIKAAHVKQHLW 425 Query: 318 YVLSVKMQDPQFAGQTKERLSSR------QCA---AFVSGVVKDAFI----LWLN---QN 361 +S + +P F QTKE L+++ +C + VVK + + LW Q+ Sbjct: 426 IFVSCLIVNPAFDSQTKETLTTKPAKFGSKCTLADKTIGQVVKSSIVENVVLWAQTKQQS 485 Query: 362 VQAAEL-----------------LAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADC 404 V+A L +++M+ K R++L P L D Sbjct: 486 VRAFSLSLLDCWRRGALSVDRPVFRLFVFVELRKQMKVGKTKGRERLAGIPKLE-DANDA 544 Query: 405 TAQDLNRTELFLVEGDSA-----GGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQ 459 + L L EGDSA G + RDR + PL+GK+LN + S ++ ++ Sbjct: 545 GGRHSQDCTLILTEGDSAKTSCLAGLSVVGRDR--YGVFPLRGKLLNVRDASFKQLTENK 602 Query: 460 EVHDISVAIG--IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-H 516 E+ +I +G ++ ++D LRYG + I+ D D DG HI LL + ++ L+K Sbjct: 603 EIQNILKIVGLQVNDRTEDTRGLRYGSVMIMTDQDHDGSHIKGLLINMMHHYWPQLLKCR 662 Query: 517 GHVYVALPPLYRIDLG--KEVYYALTEEEKEGVLEQLKRKKGKP--NVQRFKGLGEMNPM 572 G + P+ ++ ++ +Y + E EQ KR ++ +KGLG Sbjct: 663 GFLKAFSTPIVKVSKNNVEKAFYTIPE------YEQWKRSCNTTGWKIKYYKGLGTSTDR 716 Query: 573 QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 + +E D + ++ + D + ++DM KKR+EDR+ WLQ Sbjct: 717 EFKEYFNDLDKHQIDFVWSGQHDGE----LIDMAFNKKRAEDRKRWLQ 760 >UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepID=C9S837_VERA1 Length = 1688 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 93/389 (23%), Positives = 179/389 (46%), Gaps = 38/389 (9%) Query: 251 WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAE 310 W + + G S+VN I T GGTHVN + ++ + ++ + + +G L + Sbjct: 346 WDVGFTVSDGSFQHISFVNNIATTSGGTHVNYVADQIVQYLTKYLDKKK---KGHALKPQ 402 Query: 311 DIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAE 370 I + ++ ++++P F QTKE+++++ + V+ +AF+ + + A + + Sbjct: 403 HIRNHIFVFINCRIENPSFNSQTKEQMTTKISSFGSKCVLSEAFLKKVAAS-DAIQNIMS 461 Query: 371 MAISSAQRRMRAAKKVVRKKLTSGPALPGKLA------DCTAQDLNRTELFLVEGDSAGG 424 A A + M + R ++ + + LA +CT L L EGDSA Sbjct: 462 FAEKKADKMMAKSDGNRRSRINNAKLVDANLAGTKRGHECT--------LILTEGDSAKS 513 Query: 425 SAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQ 479 A R D + + PL+GK+LN + S +++ +QE+ +I +G+ + D Sbjct: 514 LAVAGRAILDPDRIGVFPLRGKMLNVRDASIEQITKNQEIQNIKQFLGLKHKQNYTDTKG 573 Query: 480 LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA-LPPLYRIDLGK----- 533 LRYG + I+AD D DG HI LL + +L++ + + P+ ++ GK Sbjct: 574 LRYGHLMIMADQDHDGSHIKGLLINFLQVQYPSLLQIPDFFREFITPIVKVWQGKNPKNP 633 Query: 534 -EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMN--PMQLRETTLDPNTRRLVQLT 590 ++ T+ + E E K + + + +KGLG + Q+ T LD + + + Sbjct: 634 QKLQAFFTQPQYEEWKEAHKNEISRWEYKYYKGLGTSSNEDAQVYFTNLDDHLKEFDTMQ 693 Query: 591 IDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + D + D+ +KK+++ R+ WL Sbjct: 694 SSEAD------LFDLAFSKKKADARKEWL 716 >UniRef50_Q04PE7 DNA topoisomerase (ATP-hydrolyzing), subunit B n=6 Tax=Leptospira RepID=Q04PE7_LEPBJ Length = 711 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 146/656 (22%), Positives = 276/656 (42%), Gaps = 145/656 (22%) Query: 63 QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNA 121 + + + D+GRG+P E + L G F + Q G +GVGIS+V Sbjct: 111 KCVTITDNGRGIPA--------ANAEGVYLHLMYGENFDDHVKQDHVAGQNGVGISLVRM 162 Query: 122 LSKRVEV-----------------NVRRDGQVYNIAFENGEKV----------------- 147 +S +V +V++ + Y ++ E+ E+V Sbjct: 163 VSNYFKVKTVNNGSSFKKLFTVHDDVKKQIRSYKLSKEDIERVFLYFDEHGKFTDCNLLT 222 Query: 148 -------------QDLQ-VVGTCGKRNTGTSVHFWPDETFFDS--PRFSVSRLTHVLKAK 191 ++Q + K + GTSV F + +F++ F+V + L+ Sbjct: 223 KDQIDKLNSLLKKTNMQESIEKASKEDHGTSVEFELNPKYFNNLDISFNVDLMKQYLQDI 282 Query: 192 AVLCPGVEITFK--------------DEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 A+ PG+E+ F DEI + Y+ DY A L Sbjct: 283 AMTNPGLEVQFVFKGKKEKYKFKKGLDEIFSHSDLVYYK---MDYTAPGSASQLHLETYL 339 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 IG + L W VN I QGG+ + L + D +R+ + Sbjct: 340 VIGQ--------NKNLTW------------VNSIFAPQGGSAIEYLENRICDEVRKKSQI 379 Query: 298 RNILPRGVKLSA--EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 L + +K S+ D+ + ++ ++ +P+F Q K L + ++ +++A Sbjct: 380 V-ALEKKLKTSSTRNDVRNCFHMYVNARLLNPRFKSQDKSYLIND-----LNEDIRNAVD 433 Query: 356 LWLNQNVQAAELLAEM-----------AISSAQRRMRAAKKVVRKKL---TSGPALPGKL 401 L + ++ LL E+ A AQ+ ++ A ++ KL T P PG++ Sbjct: 434 KHLEKFIKKTGLLEEIKLQMEKRTQLKAFEDAQKGLKKASRMNIPKLMPPTGKPGDPGRV 493 Query: 402 ADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV 461 LF+ EGDSA + AR+ + + PL+GK LN +S + +A++E+ Sbjct: 494 ------------LFVAEGDSAIAGLRPARNPKLHGLFPLRGKPLNCKGLSIAKAIANEEL 541 Query: 462 HDISVAIGI--DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHV 519 +I +G+ D + +L Y K+ I+ DAD DG I +L+ + F +++ L + G + Sbjct: 542 KNIVAIVGLPLDQKVKSVDELNYDKVSIITDADFDGYAIRSLMLSFFYEYWPELFELGFI 601 Query: 520 YVALPPLYRIDL-----GKEVYYALTEEEKEGVLEQLKRKKGK-PNVQRFKGLGEMNPMQ 573 +++ PLY +D+ KE + + +++ E +++++++ G+ +R KGLGE Sbjct: 602 HISSAPLYEVDVKFGDKKKETVFCIDDKDYEDLIKRVEKNGGEITRKKRNKGLGETGKEA 661 Query: 574 LRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++ + T+ +TI ++ D + ++ K +E RR+ + E M+ IE Sbjct: 662 MKFAVDECMTK----ITIGNKKD--ASKIQNLWFHKDFAEQRRDAISEYA-MSVIE 710 >UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae RepID=TOP2_CRIFA Length = 1239 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 132/613 (21%), Positives = 259/613 (42%), Gaps = 67/613 (10%) Query: 40 IDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK 99 I+NSV A + + + + + V +DG G+P+ E + E++ L Sbjct: 70 INNSVRGARMTY---ISIKISDSGEIMVENDGAGLPIVKSKEHKMYIPEMVFGHLLTSSN 126 Query: 100 FSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCG-K 158 ++N + G HG G + N LS + V R G+ +++++ + ++ V K Sbjct: 127 YNNDASSTTAGRHGYGAKLTNILSTKFSVVCRTAGREFHMSWTDHMRMATTPRVSNVDPK 186 Query: 159 RNTGTSVHFWPDETFFDSPRFSVS-RLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD 217 T V F PD F P ++S + VL + + + + +NN + +Q Sbjct: 187 EKNVTRVTFMPDYAHFGFPTAAISLDMKRVLHKRIMDLAAMFSKIEVRLNNVP--FGFQT 244 Query: 218 GLNDYLAEAVNGLP----TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTES------Y 267 NDY + LP +P +PF+ + ++ ++P+ LT+S Sbjct: 245 -FNDY--ARLYSLPGADGAMPPEPFVHT------GPNGSIAFVPQ----LTQSPKRIVGV 291 Query: 268 VNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDP 327 VN + T GGTH + L + R++ G + + ++ + P Sbjct: 292 VNGVVTYNGGTHCTSAMEILETGLDSLS--RSLKKDGKVIDTNRVARHFTVLVFLIQSQP 349 Query: 328 QFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV 387 +F Q+K RL S V D ++ AA E ++S ++ A + Sbjct: 350 KFDSQSKARLVSTVTMPRVPRTALDQYL--------AAMPFLEAHMNSMDDQLAAE---L 398 Query: 388 RKKLTSGP--------ALPGKLADCTAQ---DLNRTELFLVEGDSAGG---SAKQARDRE 433 K++ +G + KL D T+ N L + EGDSA ++ + ++ Sbjct: 399 NKEIGTGKRLSSRSLISSITKLVDATSSRSDGKNIRTLIVTEGDSAKALALNSLSSEQKK 458 Query: 434 YQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID--PDSDDLSQLRYGKICILADA 491 + + PL+GK+LN + + +E+ D+ +A+G++ ++LRY ++ ++ D Sbjct: 459 FCGVFPLRGKLLNVRNKNLKRLKTCKELQDLFLALGLELGKTYKSPAELRYQRLLVMTDQ 518 Query: 492 DSDGLHIATLLCALFVKHFRALVKHGHVYVAL--PPLYRIDL-GKEVYYALTEEEKEGVL 548 D+DG HI L+ F + +L++H Y++L P+ +I + GK ++ Sbjct: 519 DADGSHIKGLVINAFESLWPSLLQHNPGYISLFSTPIVKIKVNGKAKEVVAFHSFRDFHR 578 Query: 549 EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA 608 Q + + + +KGLG + +E D R +++L ++ +D + D++ D Sbjct: 579 WQRANPNARYSAKYYKGLGTSTTAEGKEYFADME-RNVMRLVVEPKDHRLLDSVFD---- 633 Query: 609 KKRSEDRRNWLQE 621 E R+ W+ + Sbjct: 634 SAEVEWRKEWMSK 646 >UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C981_THAPS Length = 1179 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 154/643 (23%), Positives = 275/643 (42%), Gaps = 78/643 (12%) Query: 38 EVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 E++ N+ D L +D + + ++G+ +P+ IH +E + EL+ L G Sbjct: 61 EILVNASDNRLRHPGSCNHFPSSSDPYISITNNGKSIPIQIHRKENMYIPELLFGHLLTG 120 Query: 98 GKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG-------QVYNIAFENGEKV-QD 149 F++ + +GG HG G + N SK+ V + DG + Y +E+ V + Sbjct: 121 SNFNDDQKRLTGGRHGYGAKLTNVFSKQFVVEIG-DGHSSKGKIKTYKQVWEDNMSVCHE 179 Query: 150 LQVVGTCGKRNTG------TSVHFWPDETFFDSPRFSVSRLTHVL--------KAKAV-- 193 +VV K G T + F PD R + R T +L K + V Sbjct: 180 AEVVSRDKKDADGKGNLDYTRISFIPDLA-----RLTGDRKTEMLPEEEYQLMKRRVVDI 234 Query: 194 -LCPGVEITFKDEINNTEQRWC-YQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDW 251 C G ++T +N E ++D N Y + P LP P + + W Sbjct: 235 AGCSGGKLTVT--LNGEEISVSGFEDYANLYRQPESSATP-LP--PMVYHKLNSR----W 285 Query: 252 AL-LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR-----NILPRGV 305 + + L E L + S+VN + T +GGTHV+ L + + + + + + L G Sbjct: 286 EVAVGLSETKSLESISFVNGMNTSRGGTHVDALARQISQYIADHINNKMARQLDNLQSGQ 345 Query: 306 KLSAEDIWDRCAYVLSVK--MQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQ 363 +S R L V +++P F Q KE L+S + ++F+ L Sbjct: 346 PISVSVRMVRRHLFLCVNCLIENPSFDSQMKECLTSNPDNFGSHFELSNSFLRKLVGPGI 405 Query: 364 AAELLAEMAISSAQRRM-RAAKKVVRKKLTSGPALP-GKLADCTAQDL---NRTELFLVE 418 E+L MA+ + Q M R K+ ++++ S P L LA T D+ N L L E Sbjct: 406 VEEVL-RMAMGAQQVNMARLLKEQTKRQVLSIPKLEDANLAGST--DIGTENPCTLILTE 462 Query: 419 GDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-- 473 GDSA A + R++ + PL+GK +N V+ ++ + E+ + +G+ + Sbjct: 463 GDSAKALAVAGLEVVGRDHYGVFPLRGKFMNVRNVTVKQLATNAELKAMCAILGLQFEKS 522 Query: 474 ---SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK---HGHVYVALPPLY 527 + + +LRYG + ++ D D+DG HI L+ +F + AL+K + + + PL Sbjct: 523 YDTAKERQELRYGHVMLMTDQDADGSHIKGLIMNMFRFFWPALLKPPSRPFMSMFITPLL 582 Query: 528 RIDLGKEV-----YYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLD-P 581 + + ++++ E + + + K V+ +KGLG P + ++ L Sbjct: 583 KATKKGKKKDSISFFSVAEYNSWRESLEDEDEISKWTVKYYKGLGTSTPTEAKDYFLSFV 642 Query: 582 NTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD 624 R + + D +R +DM K R+ DR++W+ + D Sbjct: 643 RHYRPFKWQSEKNDGER----IDMAFEKDRANDRKDWILTEYD 681 >UniRef50_P09176 DNA topoisomerase large subunit n=13 Tax=T4-like viruses RepID=TOPL_BPT4 Length = 516 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 136/508 (26%), Positives = 218/508 (42%), Gaps = 89/508 (17%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTT-RPNH-------------------LGQEVIDNSVDEA 47 + I++L+ +E +++R GMY ++ H L E+IDNSVDE Sbjct: 4 NEIKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEG 63 Query: 48 LAG---HAKRVDVILHADQSLEVIDDGRGMP---VDIHPEEGVPAVELILCRLHAGGKFS 101 + A +++V + +Q + V D+GRG+P V E +P AGG F Sbjct: 64 IRTKFKFANKINVTIKNNQ-VTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFG 122 Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNT 161 + + +GG++GVG S+ N S V DGQ NI +++ GK Sbjct: 123 DDKERVTGGMNGVGSSLTNIFSVMF-VGETGDGQ-NNIVVRCSNGMENKSWEDIPGKWK- 179 Query: 162 GTSVHFWPDETFFDSPRFSVSRLTHVL---KAKAVLCPGVEITFKDEINNTEQRWCYQDG 218 GT V F PD F++ S L L + AV+ P ++ TF N + + ++ Sbjct: 180 GTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTF----NGKKVQGNFKKY 235 Query: 219 LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGT 278 Y A+ + E A+ P+G LT YVN I T GG Sbjct: 236 ARQYDEHAI---------------VQEQENCSIAVGRSPDGFRQLT--YVNNIHTKNGGH 278 Query: 279 HVNGLRQGLLDAMREFCEYRNILPR-----GVKLSAEDIWDRCAYVLSVK-MQDPQFAGQ 332 H++ AM + CE +++P+ + ++ + + V+ V+ M++ + Q Sbjct: 279 HIDC-------AMDDICE--DLIPQIKRKFKIDVTKARVKECLTIVMFVRDMKNMRLIRQ 329 Query: 333 TKERLSS----------RQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA 382 TKERL+S ++ + IL A LA + + +A Sbjct: 330 TKERLTSPFGEIRSHIQLDAKKISRDILNNEAILMPIIEAALARKLAAEKAAETKAAKKA 389 Query: 383 AKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKG 442 +K V K + + L GK AD T LFL EGDSA G RD+E PL+G Sbjct: 390 SKAKVHKHIKAN--LCGKDADTT--------LFLTEGDSAIGYLIDVRDKELHGGYPLRG 439 Query: 443 KILNTWEVSSDEVLASQEVHDISVAIGI 470 K+LN+W +S ++L ++E+ DI G+ Sbjct: 440 KVLNSWGMSYADMLKNKELFDICAITGL 467 >UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV Length = 1263 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 147/600 (24%), Positives = 245/600 (40%), Gaps = 85/600 (14%) Query: 23 PGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVD----VILHADQS---LEVIDDGRGMP 75 PG+Y + EVI N+ D H KR + + DQ + V ++G G+ Sbjct: 68 PGLY-------KIYDEVIVNAAD-----HNKRCQTCNIIKVDIDQKTGQISVWNNGDGID 115 Query: 76 VDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR---- 131 V IH E + +I L + + GG +G G + N S VE + Sbjct: 116 VAIHKEHNIWVPSMIFGELLTSTNYDKNEEKTVGGKNGFGAKLANIYS--VEFTIETVDA 173 Query: 132 RDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRL---THVL 188 G+ + F N ++ + + K+++ T + F PD +F + L T L Sbjct: 174 NKGKKFFQRFTNNMYDKEEPKISSF-KKSSYTKITFIPD-----FKKFGLKCLDDDTLAL 227 Query: 189 KAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEA 248 K V + K N+ + Q+ Y+ GL PE DT Sbjct: 228 FKKRVFDLAMTTNAKVYFNDKQ---IVQNNFKKYV-----GL-YFPEGSQHKVVIDDTTH 278 Query: 249 VDWALLWLPEGGELLTE---SYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV 305 W + + + + L S+VN I T +GGTHV + +++ ++ + + V Sbjct: 279 ERWKVGVIYDPTDQLEHQNISFVNSICTSRGGTHVEQVVGQIVNGLKTAIVKK---AKNV 335 Query: 306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQC---------AAFVSGVVKDAFIL 356 ++ I + + + + +P F QTKE L+ + F+ GV+K Sbjct: 336 QIKPAMIKENLIFFVDATIVNPDFDTQTKEYLTKKAANFGSKFEVTEKFIKGVIKTGVCD 395 Query: 357 WLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCT---AQDLNRTE 413 + N +A E E +S + R GP KL + ++ + Sbjct: 396 QIIANAKARE---EANLSKTDGKGR------------GPVRYEKLYNAHKAGTKEGYKCT 440 Query: 414 LFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 L L EGDSA A + R+Y + PL+GK+LN + S ++ ++E+ I +G+ Sbjct: 441 LILTEGDSAKTFAMSGLNVIGRDYYGVFPLRGKLLNVRDASPKKIADNEEITAIKKIVGL 500 Query: 471 DPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH-GHVYVALPPLY 527 + DDL LRYG I ILAD D DG HI L+ + +LVK+ G + PL Sbjct: 501 EQGKVYDDLKGLRYGSIMILADQDVDGYHIKGLIMNFIHCFWPSLVKYEGFIQSFATPLL 560 Query: 528 RIDLGKEVYYALTEEEKEGVLEQLKRKK--GKP-NVQRFKGLGEMNPMQLRETTLDPNTR 584 + GK + E+ K++ GK +++ +KGLG +P + +E D N + Sbjct: 561 KATKGKGKTKQVVAFTSPQSFEEWKKENNDGKGWSIKYYKGLGTSDPAEAQECFADLNDK 620 >UniRef50_B9U3G6 DNA topoisomerase 2 (Fragment) n=1 Tax=Pleurotus djamor RepID=B9U3G6_PLEDJ Length = 735 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 101/420 (24%), Positives = 181/420 (43%), Gaps = 59/420 (14%) Query: 251 WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAE 310 W + + G S+ N I T++GGTHVN + L + +N +G + Sbjct: 145 WEVGFATSDGTFQQVSFANSISTIKGGTHVNYISDQLAKNLIAAITKKN---KGAAVKPA 201 Query: 311 DIWDRCAYVLSVKMQDPQFAGQTKERLS-----------------SRQCAAFVSGVVKDA 353 I + ++ +++P F QTKE L+ + C V V+ Sbjct: 202 QIKNHMWIFVNALIENPTFDSQTKETLTLPASKFGSRPTLSEEFMKKGCVPIVLVVLSSY 261 Query: 354 FIL-----WLNQNVQAAELLAEMAI--SSAQRRMR-----AAKKVVRKKLTSGPALPGKL 401 +L ++Q + A+ A+ I + +R R + + V+ + +G A Sbjct: 262 RLLVQKSSIIDQVLNWAKFKADQQIKKTDGSKRTRYFHSHSTEFVLNSIIVTGMAKLSDA 321 Query: 402 ADCTAQDLNRTELFLVEGDSA-----GGSAKQARDREYQAIMPLKGKILNTWEVSSDEVL 456 + + + L L EGDSA G A RD + PL+GK+LN E D+V+ Sbjct: 322 NNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGRDNF--GVFPLRGKLLNVREARHDQVM 379 Query: 457 ASQEVHDISVAIGI--DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV 514 ++E+ +I +G+ + + ++S LRYG++ I+ D D DG HI LL + +L+ Sbjct: 380 KNEEIQNIKKIMGLQHNKEYSNVSSLRYGRLMIMTDQDHDGSHIKGLLINFLDHFYPSLL 439 Query: 515 KHGHVYVAL-PPLYRIDL------------GKEVYYALTEEEKEGVLEQLKRKKGKPNVQ 561 K V P+ R+ + G + T E E +E K K + Sbjct: 440 KIPEFLVEFVTPIVRVSIFHQCQIPPHVTKGSQRKNFFTIPEYEQWIESTPDSK-KWTAK 498 Query: 562 RFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 +KGLG + RE + + T++DE+ ++D+ +KK+++DR++WL++ Sbjct: 499 YYKGLGTSSDADAREYFSKMSKHMIPFATMEDEE----RPLIDLAFSKKKADDRKDWLRQ 554 >UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q8HFR9_9EUGL Length = 1247 Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 143/596 (23%), Positives = 239/596 (40%), Gaps = 71/596 (11%) Query: 65 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 + V +DG G+P+ + + E+I L + N S G HG G + N +S+ Sbjct: 90 ITVENDGAGIPLVKSKDHKLLIPEMIFGHLLTSSNYDNDPDSMSAGRHGYGAKLTNIMSQ 149 Query: 125 RVEVNVRRDGQVYNIAF-ENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS--V 181 V R + I + ++ + D QV T N T + F PD + F + + + Sbjct: 150 EFIVYCRTADKEVTIRWTDHMRSIDDYQVQPTNEAGNL-TKITFTPDFSVFGVTKLTKDM 208 Query: 182 SRLTH--VLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 R+ H +L A P V ++F + Y L EA L + P P + Sbjct: 209 YRILHKRILDLAAAF-PSVTVSFNGTALDVGSFASYVK-----LFEAPASLFSAPTAPVV 262 Query: 240 GN-------------FAGDTEAVDWALLWLPEGG-ELLTESYVNLIPTMQGGTHVNGLRQ 285 + F + + + A + P+ T + VN + T GGTHV +Q Sbjct: 263 ADGDAAPPPAELNKPFLFEVKHLRLAFIPQPQASVSRRTFAVVNGVVTYSGGTHVQAAQQ 322 Query: 286 GLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR-QCAA 344 L DA+ + G+ ++ V+ ++ P+F Q+K RL S+ + Sbjct: 323 ILTDAVDALVAQKK--KEGIIVTVNTFLRYFTTVVFLETTQPKFDSQSKVRLVSKVKFPR 380 Query: 345 FVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL-----TSGPALP- 398 F +G Q E LA M S + V+ K+L SG P Sbjct: 381 FPTG--------------QLVEHLATMTFLSDAS--KGQMDVLNKELNALIQVSGKRRPM 424 Query: 399 ----GKLADCTAQDLNRTE---LFLVEGDSAGGSAKQA---RDREYQAIMPLKGKILNTW 448 KL D + + +E L + EGDSA A + R+Y + PL+GK+LN Sbjct: 425 ISTLTKLVDAASAGGSGSEIRTLIVTEGDSAKALALNSLSNEQRKYFGVFPLRGKLLNVR 484 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDSDDLS--QLRYGKICILADADSDGLHIATLLCALF 506 + + +E+ D+ A+GI+ S LRY ++ ++ D D+DG HI LL + F Sbjct: 485 NNNLARLKKCKELCDLFAALGIEIGRRYTSTESLRYQRLLVMTDQDADGTHIKGLLISAF 544 Query: 507 VKHFRALVKH--GHVYVALPPLYRIDL-GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRF 563 + +L++H G + + PL R G +V+ +E R + ++ + Sbjct: 545 ESLWPSLLQHSLGFISIFSTPLIRATTRGGDVHSFYNVQEFVAWKHDNARLASECFIKYY 604 Query: 564 KGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 KGLG + +E + L+ L + D Q D + D + R+ WL Sbjct: 605 KGLGTSTTTEGKE-YFKQMEQHLMPLQVTPSDSQVLDNVFD----SDEVQWRKEWL 655 >UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepID=D2XAH7_9VIRU Length = 1089 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 138/572 (24%), Positives = 232/572 (40%), Gaps = 99/572 (17%) Query: 85 PAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFE 142 PA EL A +++ + + G +G+G + + SK V +++ F Sbjct: 123 PA-ELFFGYSKASTNYNDDEVRKTSGRNGLGAKLTSIFSKHFVVRCFDPEKQRIFQQEFF 181 Query: 143 NGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS---VSRLTHVLKAKAVLCPGVE 199 + + V+ C K+ T V F PD F ++ +SR L+ A L G+ Sbjct: 182 DNLTRRTPPVIEKCTKKKGWTEVRFLPDFARFGLDGWTEPLLSRFQKTLR-DASLVTGLS 240 Query: 200 ITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEG 259 +F E+++ +Q TLPE ++ F+G ++ L P+ Sbjct: 241 ASF------NEEKFSFQ---------------TLPE--YVALFSGSNP--NFLCLSSPDS 275 Query: 260 GELLTESYVNLIPT---------------MQGGTHVNGLRQGLLDAMREFCEYRNILPRG 304 L E L+PT + G HVN + +L + + + Sbjct: 276 RFALLEKNPELVPTEPSQETSLSFVNGLEVFTGVHVNAWKNAVLMPLLKAFNAKQKAEGK 335 Query: 305 VKLSAEDIWDRCAYVLSV--KMQDPQFAGQTKERLSS------RQCAAFVSGVVKDAFIL 356 K S + + C + L V + P+F QTK L+S + + ++K F+ Sbjct: 336 PKASMKQL--ECFFHLFVVCDLDKPEFTSQTKHELASPTPKTTKVSPEQIKKLMKWGFVQ 393 Query: 357 WLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFL 416 L+ + + + ++ A+ A + A+C L L Sbjct: 394 ELSSRLDPKKTKKTKKLVLDLTKVDDAQL----------AGTSRSAECI--------LIL 435 Query: 417 VEGDSAGGSA----KQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 EGDSA A +DRE LKGK+LNT + + ++E+ + +G+ Sbjct: 436 TEGDSAKTLAVSGFTSLKDRERYGAFALKGKVLNTTNATQKTIGKNKELELLKNVLGL-- 493 Query: 473 DSDDLSQ-LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 S DL + LRYGK+ ++ DAD DG HI L+ KH+ L++ G V P+ + L Sbjct: 494 -SKDLGKTLRYGKVLLMCDADEDGKHIEGLVLNFLHKHYPELLEKGFVQSLRTPILKAFL 552 Query: 532 GK--EVYYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPMQLRETTLDPNTRRLV 587 GK E +++ T+ E E L + G N VQ FKGLG P R+ + ++LV Sbjct: 553 GKREEWFFSTTKFE-----EWLSKNPGHKNLKVQYFKGLGSSRPEDGRKYL---SEQKLV 604 Query: 588 QLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 D + A D+ +K +S +R+ WL Sbjct: 605 SYVADGTE----GAWFDLAFSKNKSNERKTWL 632 >UniRef50_UPI0001788AA3 transcriptional regulator, ArsR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788AA3 Length = 372 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 99/190 (52%), Gaps = 10/190 (5%) Query: 19 VRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMP 75 R GMY + + Q V++NS+ E +G+ ++ + LH D S+ V D+GRG+P Sbjct: 186 TRNNAGMYFGPSHGFDIHQLLWAVVENSILEHTSGYGDQIGIFLHEDGSVTVTDNGRGIP 245 Query: 76 VDIHPEEGVPAVELILCRLHAGGKFSNK-NYQFSGGLHGVGISVVNALSKRVEVNVRRDG 134 V P VP V+ IL +H +F+N ++ G G+ I+VVNALSK++ V +RRDG Sbjct: 246 VQALPNSDVPVVQSILTDVH---RFNNSAHFLVPGAEKGISIAVVNALSKQLSVEIRRDG 302 Query: 135 QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVL 194 +Y + +G L VG + TGTSV F P+ F S F R+ A A Sbjct: 303 NIYRQEYRHGIPQTGLLTVGLT--QETGTSVTFKPETELFSSA-FEFDRILEHKDAIAAD 359 Query: 195 CPGVEITFKD 204 P + +T ++ Sbjct: 360 YPALALTIRN 369 >UniRef50_B4YQA0 DNA gyrase subunit B (Fragment) n=1 Tax=Lactobacillus jensenii RepID=B4YQA0_9LACO Length = 258 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 7/260 (2%) Query: 128 VNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDSPRFSVSRLTH 186 V V RDG+ Y I F++G +L+ +GT GT VHF+PD + F ++ F L Sbjct: 1 VTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGTIVHFYPDPDIFTETIVFDDKILKK 60 Query: 187 VLKAKAVLCPGVEITFKDEINNTEQR--WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAG 244 ++ A L G+++TF D+ N+ + + Y+ G+ +Y+A L + P G Sbjct: 61 RIQELAFLNKGLKLTFTDKRKNSAETDVYHYEGGIKEYVAFLDEKEEKLFDTPVY--VEG 118 Query: 245 DTEAVDWAL-LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR 303 D + ++ + L G + ++ N I T +GG H G + L + ++ I Sbjct: 119 DYDGINVEVALQYTTGYKTTMMTFANNIHTYEGGMHEAGFKTALTRVINDYARKAKIFKD 178 Query: 304 G-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNV 362 LS EDI + V+S+K +PQF GQTK +L + A V +AF +L +N Sbjct: 179 SDTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFSEAFSKFLLENP 238 Query: 363 QAAELLAEMAISSAQRRMRA 382 + E + + R+ A Sbjct: 239 SVGRKIVEKGQLAEKARIAA 258 >UniRef50_UPI0001908742 DNA topoisomerase IV subunit B n=1 Tax=Rhizobium etli IE4771 RepID=UPI0001908742 Length = 200 Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 54/103 (52%), Positives = 70/103 (67%), Gaps = 4/103 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y A +I VL GLEPVR RPGMY TD +HL EVIDN++DEA+AGHA ++V Sbjct: 97 SDEYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVH 156 Query: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKF 100 L L V D+GRG+PV+ HP+ G +E+I+ +LHAGGKF Sbjct: 157 LDLQGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKF 199 >UniRef50_D1AIT2 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIT2_SEBTE Length = 226 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 7/202 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDV 57 M++ ++A +I VL +E +R++P M+ + L E+IDN V+EAL G + V Sbjct: 1 MSEIFDAKSIAVLGIMEGIRKKPEMFIGSVSAEGLCNLVWEIIDNCVNEALEGFCNTIKV 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 L + +EV D+GRG+PVD + + G +E+IL + G+ + Y+ S + G+ Sbjct: 61 RLLKNNIIEVSDNGRGLPVDFYEKAGKSKLEVILTGKYIRGELTGGIYKLSRKKYKGGLV 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VN LS+ +E V +DG+V+ + G D++ G + GT + F D F Sbjct: 121 SVNGLSETLEAVVIKDGKVWYQKYHKGVPSGDIKKTGEKSEYIHGTVIRFRADREIFGEL 180 Query: 178 RFS----VSRLTHVLKAKAVLC 195 + +++L + K +LC Sbjct: 181 EYDYEILLAKLKEIRGIKVILC 202 >UniRef50_Q6Y3B0 Gyrase B (Fragment) n=1 Tax=Geobacter pelophilus RepID=Q6Y3B0_9DELT Length = 299 Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 55/96 (57%), Positives = 66/96 (68%), Gaps = 2/96 (2%) Query: 375 SAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREY 434 AQ R RA + +L G LPGKLADC +D ELFLVEGDSAGGSAKQ RDR+Y Sbjct: 202 GAQER-RANSPAAKVRLEVG-TLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKY 259 Query: 435 QAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 QAI+PLKGKILN + D++LASQE+ + A+G Sbjct: 260 QAILPLKGKILNVEKARFDKMLASQEIRTLISALGT 295 >UniRef50_Q44273 DNA gyrase subunit B (Fragments) n=5 Tax=Acinetobacter RepID=GYRB_ACIGA Length = 216 Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/92 (54%), Positives = 65/92 (70%), Gaps = 2/92 (2%) Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEV 455 LPGKLADC +D +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN D++ Sbjct: 124 GLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDKM 183 Query: 456 LASQEVHDISVAI--GIDPDSDDLSQLRYGKI 485 ++SQEV + A+ GI + + +LRY KI Sbjct: 184 ISSQEVGTLITALGCGIGREEYNPDKLRYHKI 215 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 13/158 (8%) Query: 104 NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGT 163 +Y+ SGGLHGVG+SVVNALS ++E+ + R G ++ +++G+ V L+V+G TGT Sbjct: 1 SYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKVIGDI--ETTGT 58 Query: 164 SVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL 223 +V FWP F F+V L L+ + L GV I +DE E + + GL++ Sbjct: 59 TVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVALEHIFDLEVGLSEKS 118 Query: 224 AEAVNGLPTLPEKPFIGNFAGDTEAVDWAL--LWLPEG 259 A + GLP G A D + D AL L+L EG Sbjct: 119 ALDIAGLP--------GKLA-DCQEKDPALSELYLVEG 147 >UniRef50_C9E3K9 DNA gyrase subunit B (Fragment) n=1 Tax=Rhodococcus sp. BX2 RepID=C9E3K9_9NOCA Length = 352 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 86/335 (25%), Positives = 140/335 (41%), Gaps = 41/335 (12%) Query: 126 VEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLT 185 VE VR D + + + ++V + TGT+V FWPD F++ F+ + Sbjct: 2 VEPGVRHDKNMTDPLGRTYTNSKPGELVKGEPTKRTGTTVRFWPDPEIFETTTFNFETVA 61 Query: 186 HVLKAKAVLCPGVEITFKDEINNTEQ---------------------------------- 211 L+ A L G+ IT DE E+ Sbjct: 62 RRLQEMAFLNKGLTITLTDEGVAPEEVTDEDVPETAEAPKTAEDEAVEAAEPEVHKVKVR 121 Query: 212 RWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFA-GDTEAVDWALLWLPEGGELLTESYVNL 270 + Y GL DY+ +N + +G A G ++ A+ W E + ++ N Sbjct: 122 TYHYPGGLEDYVRH-INRTKSPIHNSVVGFTAKGTGHELEVAMQWNSGYSESV-HTFANT 179 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQF 329 I T +GGTH G R L + + + + +L L+ +DI + A ++SVK+ +PQF Sbjct: 180 INTHEGGTHEEGFRAALTTVVNRYAKDKKLLKDKDPNLTGDDIREGLAAIISVKVAEPQF 239 Query: 330 AGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM--RAAKKVV 387 GQTK +L + + +FV + W N A+ + A+SSA R+ R A+++V Sbjct: 240 EGQTKTKLGNTEVKSFVQKACNEHISHWFEANPADAKTIVTKAVSSAHARVAARKARELV 299 Query: 388 RKK-LTSGPALPGKLADCTAQDLNRTELFLVEGDS 421 R+K T GKL ++D + GDS Sbjct: 300 RRKSATEHRWSAGKLRRLPSKDPSSARSTSWRGDS 334 >UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis RepID=C6LX36_GIALA Length = 1492 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 93/391 (23%), Positives = 169/391 (43%), Gaps = 36/391 (9%) Query: 254 LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC--EYRNILPRGVKLSAED 311 L + GEL+ S+VN I T GGTHV+ + ++ + + ++ KL+ + Sbjct: 341 LGYTDSGELVQVSFVNSINTTDGGTHVDAILDLIMSQLNDILIKSFQQDAKNAKKLTRQQ 400 Query: 312 IWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS-GVVKDAFILWLNQNVQAAELLAE 370 + + + +P F QTK L + + A S G + Q V+ + + Sbjct: 401 LKSCLVLFIRSLVVNPSFDSQTKISLKTDKAALLRSLGSTQAELTNLATQLVKRIQDVRP 460 Query: 371 MAISSAQRRMRAAKKVVRK-------KLTSGPALPGKLADCTAQDLNRTELFLVEGDSAG 423 + + Q A K++ K +L P L +A T ++ ++ L L EGDSA Sbjct: 461 LWNALRQASYNQAAKLLTKTDGSKTSQLLGIPKLDDAIAAGT-RESSKCTLILTEGDSAK 519 Query: 424 -----GSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLS 478 G + ++Y + PL+GK++N S D+V + E+ ++ +G+ D + Sbjct: 520 ALAVDGISSIEDGKKYYGVFPLRGKVINVRNESIDKVSNNAEITNLKKILGLKQGMDYST 579 Query: 479 Q-----LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY-VALPPLYRIDLG 532 Q LRYG + I+ D D DG HI LL LF ++ L + + P+ R Sbjct: 580 QEARNTLRYGHVMIMTDQDPDGSHIKGLLINLFDTYWNGLARSNKFLDFFITPIVRCTQA 639 Query: 533 K--EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE--TTLDPNTRRLVQ 588 + + +Y + E +K Q K N+ +KGLG N ++ + N + L+ Sbjct: 640 RNMKTFYTIPEYKK---WTQTVTDLPKWNINYYKGLGSSNTTDAKQYFQQIANNRKTLIY 696 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + + + + + KK ++DR+ W+ Sbjct: 697 -------NPESASKLKLAFDKKLADDRKTWI 720 >UniRef50_Q2SFQ7 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SFQ7_HAHCH Length = 325 Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 161/358 (44%), Gaps = 44/358 (12%) Query: 12 VLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAK--RVDVILHADQSLE 66 +L+ + VR+RPGMY D NH+ E++ N VD LAG A +VDV ++ + Sbjct: 1 MLSFKDAVRKRPGMYFGDIDHNAVNHVIYELVANVVDLFLAGRATTLKVDV---SECEII 57 Query: 67 VIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK--NYQFSGGLHGVGISVVNALSK 124 VIDDG G P + + VE L H + + GG G+G++ VNA+S+ Sbjct: 58 VIDDGPGFPFPVE-DSAHNLVERYLTHHHDKPTADDHAPHIHVLGG--GLGLAAVNAVSE 114 Query: 125 RVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRL 184 ++ + + F G+ + L+ G +G+S+ F D + F + +L Sbjct: 115 KLTIESSNGAWRWRQVFGKGDVLAPLESFRYDGP--SGSSIKFTLDPSVFHNRLPDFFQL 172 Query: 185 THVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAG 244 + A L G+ + F E R+ + GL + LA + P P + F G Sbjct: 173 RKAMFELAHLYSGLIVEFDGE------RYVSKQGLME-LAYLMWSGPKWAFNPKMFRFKG 225 Query: 245 DTEAVDWALLWLPEGGEL-LTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR 303 TE V + + + +GG +S+VN T + G HVNGLRQ L Y P Sbjct: 226 QTEDVGFEVAAIGDGGSPPCYKSWVNGCETEEHGAHVNGLRQAL--------NYAGWAP- 276 Query: 304 GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 DI ++S+ M DP+FAG K R +R+ + ++ + D ++ +++ Sbjct: 277 -------DI-----ALISIVMHDPKFAGPVKSRFCNRRVKSLIAEALADPLKMFKSKS 322 >UniRef50_UPI00016B21F7 DNA gyrase subunit B n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21F7 Length = 114 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 3/84 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRVDVIL 59 Q+Y+ I+VL GLEPVR+RPGMY +T + HL +E+ DNS+DEA+AG+A +V+V L Sbjct: 31 QSYDGSQIQVLEGLEPVRKRPGMYIGSTGYDGVHHLIKEIADNSIDEAIAGYATKVEVTL 90 Query: 60 HADQSLEVIDDGRGMPVDIHPEEG 83 D + DDGRG+PVD HP+ G Sbjct: 91 LEDGGARISDDGRGIPVDKHPKTG 114 >UniRef50_Q1CZR7 DNA gyrase, B subunit, truncated n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CZR7_MYXXD Length = 361 Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 153/370 (41%), Gaps = 42/370 (11%) Query: 16 LEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGR 72 +E VR+RPGMY +HL ++D + +EA G + V + + D S+ + R Sbjct: 11 VENVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSR 70 Query: 73 GMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR 132 + + L R+ G F + G + + V ALS R +V++ Sbjct: 71 TVTAEN------------LVRVATGAGFLGRPPGDGWGWDSM-LVVSLALSSRYQVDIWA 117 Query: 133 DGQVYNIAFENGE------KVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTH 186 DG+ + + E+G V ++ + +R G VHF PD T F+ F +RL+ Sbjct: 118 DGRQWRVMGEHGHPQGEGAAVTPMEPMPVSAER--GVRVHFVPDATIFEVLAFDRARLSR 175 Query: 187 VLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDT 246 A L PG+ ++F D W G+ + P L +P + +F D Sbjct: 176 RCNELAALAPGLRVSFADLQRGERTLWHLPGGVAQWAHVLTEARPQLHPEPVVFDFTWDG 235 Query: 247 EAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC-EYRNILPRGV 305 V AL W + L S+ N + T++ G HV G+ Q L A+ + E R P Sbjct: 236 LRVQCALQWCEDEDSTLL-SFANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFP--- 291 Query: 306 KLSAEDIWDRCAYVLS--VKMQDPQ----FAGQTKERLSSRQCAAFVSGVVKDAFILWLN 359 W R A L+ V + P+ FAG TKE L+ + ++ FI L Sbjct: 292 -------WARVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLR 344 Query: 360 QNVQAAELLA 369 ++ LLA Sbjct: 345 EHPVTPALLA 354 >UniRef50_A5M9T1 DNA gyrase subunit B n=2 Tax=Streptococcus pneumoniae RepID=A5M9T1_STRPN Length = 128 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/85 (51%), Positives = 58/85 (68%), Gaps = 3/85 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y+A I+VL GLE VR RPGMY +T +HL E++DNS+DEALAG A + V + Sbjct: 11 QDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVFI 70 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGV 84 D S+ V+DDGRG+PVDI ++ V Sbjct: 71 EPDDSITVVDDGRGIPVDIQEKQAV 95 >UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK44_PARTE Length = 1196 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 87/341 (25%), Positives = 158/341 (46%), Gaps = 29/341 (8%) Query: 292 REFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 351 +++ E +NI P VK S I+ C V +P F QTKE L+++ + V Sbjct: 6 KKYKEMKNIKPFQVK-SFIKIFLNCQIV------NPAFDSQTKETLTTKAQKFGSTFEVS 58 Query: 352 DAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCT---AQD 408 + F L++ ++ E++ + + + R + K + K KL D ++ Sbjct: 59 EKF---LDEIIKKTEIIDNVILQAKSRLNKQLSKQLSAKKQQRLLGIDKLEDANDAGTKN 115 Query: 409 LNRTELFLVEGDSAGGSAKQA-----RDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 + L L EGDSA A RDR + PL+GK+LN + S ++ + E+ Sbjct: 116 ADLCTLILTEGDSAKSLAMAGIEIVGRDRF--GVFPLRGKLLNVRDASIQMIMKNAEIEQ 173 Query: 464 ISVAIGI--DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVY 520 + +G+ + + ++ LRYG I I+ D D DG HI L+ K + +L K G + Sbjct: 174 LVKIMGLQFNKNYENTKSLRYGSIMIMTDQDHDGHHIKGLIINFIEKFWPSLFKMKGFLK 233 Query: 521 VALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLD 580 + P+ ++ GKE + + E + + + R+ K V+ +KGLG + ++ + Sbjct: 234 QFVTPIIKVTKGKEFHSFFSIGEYKKFIAENPREDYK--VKYYKGLGTSTDSEAQQYFSN 291 Query: 581 PNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 R V T D+ D +D++ +K +++ R++WL E Sbjct: 292 LTLHRKV-FTYSDQTD---SDYIDLVFSKTKADQRKDWLSE 328 >UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 6 RepID=TOP2_IIV6 Length = 1132 Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 141/641 (21%), Positives = 255/641 (39%), Gaps = 89/641 (13%) Query: 38 EVIDNSVD-----EALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAV----- 87 EV+ N+VD + + K + + + D + + +DG+ + + +G+ Sbjct: 64 EVLANAVDNIHRSKGSSTPCKSIKIKIEDDGTTMIHNDGQVIKISKEENDGIEINGKKCS 123 Query: 88 ----ELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEV------NVRRDGQVY 137 EL+ L + + + + + G +G+G+ N LSK +V N ++ Q + Sbjct: 124 VYNHELVFGHLRSSSNYDDTVVRQTSGKNGLGVKCTNILSKSFKVIGVDPENKKKFVQEW 183 Query: 138 --NIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETF--FDSPRFSVSRLTHVLK-AK 191 N+ +G KV T + T V + PD E F S + R HVL A Sbjct: 184 TNNMKETSGPKVT------TSSSKTGYTEVIYCPDFERLGNFSSDIIGIFR-KHVLDVAM 236 Query: 192 AVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDW 251 GV + F D+ ++ + D + E E I G +E Sbjct: 237 LASSEGVSVYFNDKKLPIKK---FSDYTKLFKLEK--------ESISITEEDGSSEV--- 282 Query: 252 ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAED 311 + ++ G+ S+VN + T GG HV+G + + + + +KLS +D Sbjct: 283 TIAFVERDGKKKPISFVNGLFTKHGGQHVDGWTKPFFANLLSVLNKPSKTYKDLKLSLKD 342 Query: 312 IWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF------VSGVVKDAFILWLNQNVQAA 365 + + + + PQF Q K L S C + ++ V K + L Q+ Sbjct: 343 VTPYFRFFVKSTVDKPQFDCQNKNMLKS-PCLKYTIPDKIITKVCKWTSVQELKQSSFEK 401 Query: 366 ELLAE-----MAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGD 420 L + ++ +RR + + K +G L K + L+ + + V G Sbjct: 402 LLKGKDNNIIKTLNDKKRRPKVSVKEYDPANKAGTTLSEKCTLIVCEGLS-AKTYAVAGI 460 Query: 421 SAGGS---AKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDL 477 S G S + R++ I+PL+GK LN ++D+++ + V D+ A+G+ D Sbjct: 461 STGISFTGTDTKKGRDWFGILPLRGKFLNVRNANNDKMIKNTVVTDLVNAMGLTFGMDYS 520 Query: 478 SQ-----LRYGKICILADADSDGLHIATLLCALFVKHFRALVK------HGHVYVA---L 523 +Q L YG I I+ D D DG+HI L+ F HF +L +++ + Sbjct: 521 TQKSRKSLNYGSIIIIPDPDEDGIHIEGLVLNFFHHHFSSLFNPVVPNLKDFPFISSMKI 580 Query: 524 PPLYRID---LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLD 580 P + I+ G+ T E + K K ++ FKGLG E Sbjct: 581 PIIKVIEKPLKGRREIEFFTHEAFHKFKNENKWHKNH-EIKYFKGLGTTK----HEDVPK 635 Query: 581 PNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 +++V IDD + M+ + +++R+ WL++ Sbjct: 636 IFGKKMVVFNIDDNAHEN----MEKAFKDEEADERKEWLKQ 672 >UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924D0A Length = 1315 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 146/639 (22%), Positives = 263/639 (41%), Gaps = 87/639 (13%) Query: 38 EVIDNSVDEALAGHA-KRVDVILHADQS-LEVIDDGRGMPVDIHPEEGVPAVELILCRLH 95 E++ N+ D + K + + + D + V +DG G+PV IH + + E+I Sbjct: 102 EILVNARDHTVRDKTCKNIQITIDRDTGRITVWNDGNGIPVSIHKKYNIYVPEMIF---- 157 Query: 96 AGGKFSNKNYQFSGGLHG----VGISVVNALSKRVEVNV-------RRDGQVYNIAFENG 144 G +++NY G G G + N SK E++ DG++ + EN Sbjct: 158 -GNLLTSQNYGKKGKTVGGKNGYGAKLCNIYSKEFEIHTIGVDKIKEVDGKI--VPDENA 214 Query: 145 EKVQDLQVVGT----CGKRNTG----------TSVHFWPD-ETFFDSPRFSVSRLTHVLK 189 +KV+ Q GK + T + + PD E + + R + + ++K Sbjct: 215 KKVEYRQTFKNNMYDVGKPDINKKISQSSKQFTQISYIPDYEKYGMNGRLTNDMYSLLVK 274 Query: 190 AKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAV 249 + T +N + C + DY+ + P EKP I + + Sbjct: 275 RCYDIAACTPSTVNISVNGCNIK-CRK--FEDYIRLYYSDDPK--EKPKI-TYEKVNDRW 328 Query: 250 DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN------ILPR 303 + + + G+ S+VN I T QGGTHV+ + ++ + F + + I+P Sbjct: 329 EIGIGFNKNVGDRYI-SFVNGISTFQGGTHVSHVVNNVVAKVTAFIKKKKEHKDLKIIPA 387 Query: 304 GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR-----QCAAFVSGV---VKDAFI 355 +K + ++ ++DP F QTKE ++S+ C V + D FI Sbjct: 388 TIK-------QYLTFFINCVVEDPGFNSQTKEYMNSKVADWCTCGNMCKDVKCELSDEFI 440 Query: 356 LWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCT---AQDLNRT 412 + + L+ E+ S + MR K KK+ G KL D + +T Sbjct: 441 ----EKLCGNGLMTEVVNMSKFKEMRDLDKTDGKKV--GKLKIPKLKDALWAGGKKSAKT 494 Query: 413 ELFLVEGDSAGG---SAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 +F EGDSA +E + PL+GK+LN ++ ++ ++ E +I +G Sbjct: 495 SIFFTEGDSAQSFVIDGISVIGQERYGVFPLRGKLLNVRNATAKQIKSNTEFLNIKKILG 554 Query: 470 IDP--DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPL 526 + D+S+LRYG + I+ D D DG HI L+ + + L++ G + P+ Sbjct: 555 LKQGVKYKDVSKLRYGSVIIITDQDPDGSHIKGLIINMLEYFWPELLQIDGFIKAYNTPI 614 Query: 527 YRIDLGK-------EVYYALTEEEKEGVLEQLKRKKGKP-NVQRFKGLGEMNPMQLRETT 578 + + +Y+++E EK +E KG + +KGLG + + +E+ Sbjct: 615 VKAWKKTDKKKASVKQFYSMSEFEKWRDVEMKGDIKGNGWEYKYYKGLGTSSNKESKESF 674 Query: 579 LDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRN 617 D + L + EDD D+ L +S +++N Sbjct: 675 KDFDN-NLTTFLWEHEDDNSVKTDDDVSLDMDKSLNKKN 712 >UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NA12_PHYIN Length = 1505 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 84/315 (26%), Positives = 138/315 (43%), Gaps = 60/315 (19%) Query: 320 LSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAIS-SAQR 378 +S + +P F QTKE L++R + + + D F+ L ++ ++L+ A +A+ Sbjct: 458 VSALIDNPAFDSQTKETLTTRANSFGSTFNLSDKFLKQLEKSGLVEKILSFAAFKQTAEL 517 Query: 379 RMRAAKKVVRKKLTSGPAL-------PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD 431 R + R +LT P L K DCT L L EGDSA Sbjct: 518 RRKGGSSGKRSRLTGIPKLDDANHAGTAKSKDCT--------LILTEGDSA--------- 560 Query: 432 REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID--PDSDDLSQLRYGKICILA 489 +L ++E+ ++ +G+ + LRYG + I+A Sbjct: 561 ---------------------KTILKNEEIQNVVKILGLKYGQKYESTKGLRYGHLMIMA 599 Query: 490 DADSDGLHIATLLCALFVKHF--RALVKHGHVYVALPPLYRIDLG--KEVYYALTEEEKE 545 D D DG HI L+ L + HF LV G + + P+ + G KEV+Y + E E Sbjct: 600 DQDHDGSHIKGLVINL-IHHFWPSLLVVDGFLQEFITPIVKCTKGRTKEVFYTMP--EYE 656 Query: 546 GVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDM 605 E+ + +G ++ +KGLG + +E D T + + T D + D ++DM Sbjct: 657 AWRERTNQGRGWV-IKYYKGLGTSTAAETKEYFSDLQTHQ-IGFTYDGDGDAD---VIDM 711 Query: 606 LLAKKRSEDRRNWLQ 620 +KKR EDR++WL+ Sbjct: 712 AFSKKRVEDRKDWLR 726 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 12/159 (7%) Query: 16 LEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHA-KRVDVILHADQS-LEVIDDGRG 73 L+ + PG+Y + E+I N+ D + + V + +++ + V ++G+G Sbjct: 141 LKKINYVPGLY-------KIFDEIIVNACDNKQRDKSMNTLKVTIDVEKNEISVWNNGKG 193 Query: 74 MPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKR--VEVNVR 131 +P+ +H E V ELI L G F +K + +GG +G G + N S VE Sbjct: 194 IPIVLHKEHKVYVPELIFGHLLTGSNFDDKKKKTTGGRNGYGAKLANIFSNEFVVETADS 253 Query: 132 RDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD 170 Q Y FE+ ++ + +++ T + F PD Sbjct: 254 STKQKYKQVFESNMSKKNPPSITKWAQKDF-TCISFKPD 291 >UniRef50_B1PJM5 DNA gyrase subunit B (Fragment) n=1 Tax=Micromonospora tulbaghiae RepID=B1PJM5_9ACTO Length = 215 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 17/222 (7%) Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS R+ V + +DG V+ + G + + TG++V FWPD FF++ Sbjct: 1 VVNALSPRMGVEIHKDGFVWG---QRGNHSKPRPLEKGEETDRTGSAVCFWPDPDFFETV 57 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEI-------NNTEQRWCYQDGLNDYLAEAVNGL 230 F + L+ A L G+ I DE E + Y+ G+ D+ +N Sbjct: 58 DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIGDF-GRRLNAS 116 Query: 231 PTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTES---YVNLIPTMQGGTHVNGLRQGL 287 + P G F + + + +G E ES + N I T +GGTH G R L Sbjct: 117 KS-PIHKTGGEFGAEETGMSVEIAM--QGNESYGESVYTFANNIDTHEGGTHEEGFRAAL 173 Query: 288 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQF 329 + + + +L +LS EDI + A ++SVK+ DPQF Sbjct: 174 TSVVNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQF 215 >UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RIW2_TETNG Length = 1568 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 110/469 (23%), Positives = 190/469 (40%), Gaps = 60/469 (12%) Query: 64 SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALS 123 ++ + ++G+G+PV H +E + LI L + + + +GG +G G + N S Sbjct: 126 TISIWNNGKGIPVVEHKDEKMYVPALIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFS 185 Query: 124 KR--VEVNVRRDGQVYNIAFENG-EKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF- 179 + VE + + ++N K + +V G + T V F PD + F + Sbjct: 186 TKFTVETACKEYRHSFKQTWQNNMTKTSEPKVKLFDG--DDFTCVTFQPDLSKFKMEKLD 243 Query: 180 --SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 +++ LT A C GV++T + +G Y+ V L E Sbjct: 244 KDTMALLTRRAYDVAGSCRGVKVTLNGKKLPV-------NGFRSYVDLYVKD--KLDETG 294 Query: 238 FIGNFAGDTEAVDWAL-LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 +T W + L L E G S+VN I T +GG H++ + ++ + E + Sbjct: 295 VALKVVNETVNERWEVCLTLSEKG-FQQISFVNSIATTKGGRHIDYVVDQIVAKLIEVVK 353 Query: 297 YRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV-VKDAFI 355 +N GV + + + ++ +++P F QTKE ++ Q +F S + D FI Sbjct: 354 KKN--KAGVTVKPFQVKNHIWVFVNALIENPSFDSQTKENMT-LQTKSFGSKCPLSDKFI 410 Query: 356 LWLNQ-----------------------NVQAAELLAEMAISSAQRRM-RAAKKVVRKKL 391 + N E + AQ ++ + V K+ Sbjct: 411 RAVRTPPGRPSSCTRAVKSRCLCHLQATNCGIVESILNWVKFKAQTQLNKKCSSVKHSKI 470 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSA-----GGSAKQARDREYQAIMPLKGKILN 446 P L D + + L L EGDSA G RDR + PL+GKILN Sbjct: 471 KGIPKL-DDANDAGGKHSSECTLILTEGDSAKSLAVSGLGVIGRDR--YGVFPLRGKILN 527 Query: 447 TWEVSSDEVLASQEVHDISVAIGID-----PDSDDLSQLRYGKICILAD 490 E + +++ + E+++I +G+ D++ L LRYGKI I+ D Sbjct: 528 VREATHKQIMENAEINNIIKIVGLQYKKSYDDAESLRSLRYGKIMIMTD 576 >UniRef50_UPI00016C4A69 DNA gyrase subunit B n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4A69 Length = 294 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 94/324 (29%), Positives = 131/324 (40%), Gaps = 43/324 (13%) Query: 1 MTQTYN-ADAIE----VLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHA 52 M YN +D IE V +E +R RP M+ T L Q E++++++ A Sbjct: 1 MKCGYNTSDPIEADLPVEAPMEAIRLRPRMFLGGTGSRGLHQLLFELVNDALGPLSGDPA 60 Query: 53 KRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH 112 V V L AD +E+ DD P V AV + LHA Sbjct: 61 GVVRVALDADGFVEISDD-------CSPPLNVEAVFSRMSGLHAADS------------- 100 Query: 113 GVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDET 172 SV ALS+ + RR G V F G+ + Q G + G +V F PD Sbjct: 101 ---RSVACALSEELTARARRSGAVPQCTFRRGQLHAETQFGGP--PDDCGLTVRFRPDPA 155 Query: 173 FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEA-VNGLP 231 F + RF + + L+ A L GV I F DE + TE + Y DG+ DY+ N P Sbjct: 156 IFGAARFDPDIIRNRLQQCAFLNSGVRIAFADESSGTEDVFEYPDGIADYVKWLNTNRTP 215 Query: 232 TLPEKPFIGNFAGDTEAVDW--ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 E + F G+ V + L W + + L S+ N T GGTH G+R + Sbjct: 216 VHAE---VIAFDGEAGGVRYEVGLQWCAD-ADALPVSFANGYCTRLGGTHTTGVRAAVKT 271 Query: 290 AMREFCEYRNILPRGVKLSAEDIW 313 C R++ R K SA W Sbjct: 272 WCARCC-VRSL--RAKKSSAMTRW 292 >UniRef50_B1PL25 DNA gyrase subunit B (Fragment) n=79 Tax=Bacteria RepID=B1PL25_ECOLX Length = 67 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/67 (58%), Positives = 51/67 (76%) Query: 403 DCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVH 462 DC +D +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN + D++L+SQEV Sbjct: 1 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 60 Query: 463 DISVAIG 469 + A+G Sbjct: 61 TLITALG 67 >UniRef50_UPI0000382E10 COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382E10 Length = 122 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/79 (56%), Positives = 53/79 (67%), Gaps = 3/79 (3%) Query: 5 YNADAIEVLTGLEPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y+A AIEVL GLEPVRRRPGMY TD +HL EVIDNS+DEA+AGHA +++ L Sbjct: 44 YDASAIEVLEGLEPVRRRPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIELELED 103 Query: 62 DQSLEVIDDGRGMPVDIHP 80 L V D G+P D HP Sbjct: 104 TVCLVVTDIVLGIPFDPHP 122 >UniRef50_A8V367 Gyrase B (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V367_9AQUI Length = 277 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/97 (43%), Positives = 63/97 (64%), Gaps = 6/97 (6%) Query: 451 SSDEVLASQEVHDISVAIGIDPDSD----DLSQLRYGKICILADADSDGLHIATLLCALF 506 S+DEV + ++ I IG+ +SD D+S+LRY KI ++ADAD DG HI TLL LF Sbjct: 1 SNDEVRSI--INAIGTGIGLPTESDEEGFDISKLRYHKIILMADADVDGSHITTLLLTLF 58 Query: 507 VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEE 543 ++F L+++G +Y+A PPLY++ G+ Y +EE Sbjct: 59 YRYFPQLIENGFLYIAQPPLYKLKKGRTNIYVKDDEE 95 >UniRef50_Q196X4 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 3 RepID=TOP2_IIV3 Length = 1113 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 155/668 (23%), Positives = 248/668 (37%), Gaps = 112/668 (16%) Query: 18 PVRRRPGMYTD---------TTRPNHLGQ---EVIDNSVDEAL----AGHAK----RVDV 57 P R M+ D TT P L + EV+ N+VD GH +VDV Sbjct: 31 PTARSEWMFDDAVNQIVWRPTTTPEALVRIFVEVLTNAVDNIERSINGGHELCKNIKVDV 90 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGV-----PAVE----------------LILCRLHA 96 L ++ V +DG+ +PV + + GV P E +I Sbjct: 91 DLKTGKT-SVWNDGQVIPVVKNCDNGVVQPPPPTTEQDRLAYEKLNREYIHTIIFGHFRT 149 Query: 97 GGKFSNKNYQFSGGLHGVGISVVNALSKR---VEVNVRRDGQVYNIAFENGEKVQDLQVV 153 + N+ Q SG +GVG+ N S V V+ R + N K QVV Sbjct: 150 SSNYDNETDQVSGK-NGVGVKCTNIFSSWFSVVGVDPDRKLKFSQEWRSNMTKSGAPQVV 208 Query: 154 GTCGKRNTGTSVHFWPDETFF---DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE 210 C + T V + PD F P S ++ + P F E + Sbjct: 209 -KCALKTGYTLVEYVPDFARFKLKSYPEDVESIFKKLVVDASAFFPNTAFFFNGERTVVK 267 Query: 211 QRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNL 270 Y + AV+ + + D ++ + L S+VN Sbjct: 268 NAVAYAKLYYNLNETAVDSVVI--------------DYKDSKVVVVGSATPLPPVSFVNG 313 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFA 330 T GG HV + + A+ + + V L+ DI + K+ P+F Sbjct: 314 QITPAGGQHVTNWSRVIFGALLAALNGK----KNVSLTKADIAPYFQLFIHSKVSKPKFD 369 Query: 331 GQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKK 390 GQ K L S + A + DA IL ++L IS+ Q ++ +K+ + K Sbjct: 370 GQNKNCLKSPKVEAHL-----DATIL--------KKMLKWKIISTIQDKVVKSKEYLALK 416 Query: 391 LTSGPALPGKLADCTAQDLNR----TELFLVEGDSAGGSAK--------QARDREYQAIM 438 P D Q NR + L + EG SA A + R Y I+ Sbjct: 417 KIECRRTPIVKVDGYDQ-ANRLGPDSVLIVCEGLSAKSYAVAGIQKGLFNKKGRTYFGIL 475 Query: 439 PLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD-----DLSQLRYGKICILADADS 493 PL+GK LN + ++ ++ V D + + + D + + L YG + IL DAD Sbjct: 476 PLRGKFLNVKNTTPLKIGQNKVVSDFIKVLNLKFNLDYRKATNYATLNYGTLLILTDADK 535 Query: 494 DGLHIATLLCALFVKHFRALV-KHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK 552 DG+HI L+ L + F L + G +Y P+ +I L K+ L +E E + Sbjct: 536 DGIHIKGLILNLIHELFPTLFHRQGFIYSMETPIVKI-LHKKGQPTLFYDENS--FEDWR 592 Query: 553 RKKGK-PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKR 611 + + + + +KGLG + P + R D+ TDA ++ + + Sbjct: 593 AQHPELKHFKYYKGLGTIGPADVAAFFGSKVVRY--------HYDEATDAAVNSVFKDEN 644 Query: 612 SEDRRNWL 619 + +R+ WL Sbjct: 645 ANERKEWL 652 >UniRef50_D2J2Q7 DNA gyrase subunit B (Fragment) n=7 Tax=Corynebacterineae RepID=D2J2Q7_9ACTO Length = 249 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 106/256 (41%), Gaps = 51/256 (19%) Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGK----RNTGTSVHFWPD-ETFFDS 176 LS +VE+ ++ DG N E+ G K R TGT+V FWPD E F ++ Sbjct: 1 LSTKVELEIQNDGF-------NWEQTYTYATPGALEKGTPTRKTGTTVRFWPDPEIFTET 53 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKD----------------EINNTE---------- 210 RF+ + L+ A L G+ IT D E TE Sbjct: 54 TRFNAETVARRLQEMAFLNKGLTITLTDQRPQAIEPPGDADGDEESGTTEAAEVVKSEEE 113 Query: 211 ----------QRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGG 260 + + Y DGL DY+ ++ G V+ A+ W Sbjct: 114 KAAAAAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVVGFTGQGTGHEVEVAMQWNAGYS 173 Query: 261 ELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP--RGVKLSAEDIWDRCAY 318 E + ++ N I T +GGTH G R L + ++ + ++ + +LS +DI + A Sbjct: 174 ESV-HTFANTINTHEGGTHEEGFRAALTLTVNKYAVDKKLIKDKKEDRLSGDDIREGLAA 232 Query: 319 VLSVKMQDPQFAGQTK 334 V+SVK+ DPQF GQTK Sbjct: 233 VISVKVGDPQFEGQTK 248 >UniRef50_C5Z2Y6 Putative uncharacterized protein Sb10g016438 (Fragment) n=3 Tax=Sorghum bicolor RepID=C5Z2Y6_SORBI Length = 396 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 5/113 (4%) Query: 408 DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVA 467 D + L EGDSA A + R+Y ++ LKGK+LN + S ++L ++E++++ Sbjct: 112 DSQKCTLIFTEGDSAKDLALGSVHRDYFGVLALKGKLLNVRDASLKKILDNEEINNMRKI 171 Query: 468 IGID-----PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK 515 IG+D D DL LRYGK+ ++ D D DG HI L+ LF + +L+K Sbjct: 172 IGLDYKKHYNDEKDLKDLRYGKVMVMTDQDPDGFHIKGLIINLFHVFWPSLLK 224 >UniRef50_A6G3Y8 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3Y8_9DELT Length = 272 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 74/301 (24%), Positives = 138/301 (45%), Gaps = 37/301 (12%) Query: 48 LAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQF 107 L+G R+ V L D V+DDG G+ P E + +E + G ++ + Sbjct: 3 LSGRCSRLYVSLTHDH-FCVVDDGPGL----EPSEVLDQLETHHKKRTRQGDRAHAHVIG 57 Query: 108 SGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHF 167 +G +G++++NAL++R+E +RR G+V FE V + ++VG C ++GT++ Sbjct: 58 TG----MGLAMINALARRLEFELRRAGEVRRWVFEGTVLVSENELVGACD--DSGTTLRV 111 Query: 168 WPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEA- 226 WPD + P S + L+ VL+ LCP + + +R+ + GL ++ Sbjct: 112 WPDASLMREPLPSRAELSAVLEKVHWLCPALRVELDG------RRFSGEAGLAAWIRRQP 165 Query: 227 -VNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 285 +G P + + G + WA WL E ++VNL T + G+H++ L + Sbjct: 166 EWDGSP-VETLELVDGARGARVGLAWA--WLDEPCVARQAAFVNLRETPR-GSHMDALLE 221 Query: 286 GLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 345 GL + P + R ++SV +++P++ T+E L+ + A+ Sbjct: 222 GL-------AARYGVSPAMAR-------RRVLALVSVVLEEPRYDSPTREVLAQPELGAW 267 Query: 346 V 346 + Sbjct: 268 I 268 >UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea RepID=Q27537_CAEEL Length = 842 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 19/228 (8%) Query: 403 DCTAQDLNRTELFLVEGDSAGG---SAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQ 459 D ++ + L L EGDSA S R+ + P + K+LN +++ +++ S Sbjct: 48 DAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGVFPFRRKLLNVCDLNVNQIADSA 107 Query: 460 EVHDISVAIGID-----PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV 514 EV+ I +G+ DD LRYGK+ I+A+ DSDG LL F + + AL Sbjct: 108 EVNAIIKILGLQYTKKYETEDDFKTLRYGKLLIMANHDSDGSQFKGLLLNFFHRFWPALF 167 Query: 515 KHGHVYVALPPLYRIDLGKE--VYYALTEEEKEGVLEQLKRKKGKP-NVQRFKGLGEMNP 571 K V + P+ + GKE +Y+L E + ++ K ++ + GLG + Sbjct: 168 KRDFVEDFITPIAKATEGKEEVSFYSLPEYSE----WRMNTDNWKSYTIKYYNGLGTLTS 223 Query: 572 MQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + ++ D R ++ + DD D ++M +KK+ E R ++L Sbjct: 224 KEAKKCFSDM-VRHRIRFKYNGADD---DKAVNMAFSKKKIEARTDYL 267 >UniRef50_A8NKQ4 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NKQ4_COPC7 Length = 919 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 79/305 (25%), Positives = 134/305 (43%), Gaps = 34/305 (11%) Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL 391 QTKE L+ + D FI + + +L A A ++M+ A R +L Sbjct: 357 QTKELLTLPSSKFGSKPTISDEFIKKVAHSGIVDNVL-NWAKFKADQQMKRADGTKRSRL 415 Query: 392 TSGPALPGKLADCT------AQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKG 442 KL+D AQD L L EGDSA A R+ + PL+G Sbjct: 416 LG----LAKLSDANNAGTRHAQDCT---LILTEGDSAKALAIAGLGVVGRDNFGVFPLRG 468 Query: 443 KILNTWEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIAT 500 K+LN E D+V+ ++E+ +I +G+ + D + S LRYG++ I+ D D DG HI Sbjct: 469 KLLNVREACHDQVMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRVMIMTDQDHDGSHIKG 528 Query: 501 LLCALFVKHFRALVKHGHVYVAL--PPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKP 558 L+ + +L+K V P + G +V T E E LE+ + K Sbjct: 529 LIINFLDHLYPSLLKIPDFLVEFVTPLSGYVKKGNKVKDFFTIPEYEQWLEETPDAR-KW 587 Query: 559 NVQRFKGLGEMNPMQLRETTLDP--NTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRR 616 + +KG E + + ++ + R + T++ +D+ +KK++++R+ Sbjct: 588 ESKYYKGFSEDKGAREYFSKMEKRFHLHRRKKGTVN----------IDLAFSKKKADERK 637 Query: 617 NWLQE 621 WL++ Sbjct: 638 EWLRQ 642 >UniRef50_Q2B8E8 DNA gyrase, B subunit n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8E8_9BACI Length = 350 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 20/179 (11%) Query: 14 TGLEPVRRRPGMYTDTTR----PNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVID 69 + LE +R P T N L +I ++V E AG A R+++ LH+D S V D Sbjct: 165 SALEALREEPEKMDMKTEGDFDANILLFSLIHHAVQEHEAGFASRINIYLHSDGSATVSD 224 Query: 70 DGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH---GVGISVVNALSKRV 126 DGRG+PV + + ++ +L + KNY L+ G+ ++ +NA S+++ Sbjct: 225 DGRGIPVSLLEGTSMSRLQDVLTDV-------EKNY-LEDSLNEKSGIPVAAINAFSEKL 276 Query: 127 EVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN-TGTSVHFWPDETFFDSPRFSVSRL 184 V +++D +Y+ ++ G + L V GK N TGTS+ F PD+ F S F+ ++L Sbjct: 277 TVLIKKDTMIYSQEYQYG---KALTRVVPIGKTNETGTSITFLPDKKVFKSG-FNAAKL 331 >UniRef50_C1SL26 DNA gyrase subunit B n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SL26_9BACT Length = 322 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 49/78 (62%) Query: 465 SVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALP 524 ++ GI D ++ +LRY KI I+ DAD DG HI+TL+ F ++ +++ G++Y+A P Sbjct: 4 ALGTGIGKDDFNIEKLRYHKIIIMTDADVDGAHISTLIMTFFFRYMTEIIERGYLYMASP 63 Query: 525 PLYRIDLGKEVYYALTEE 542 PLY++ GK Y EE Sbjct: 64 PLYKVKKGKSERYIQNEE 81 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 62/115 (53%), Gaps = 9/115 (7%) Query: 482 YGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY---VALPPLYRIDLGKEVYYA 538 YG+ I + S + I T L A FR L + G VY + P Y++++ E+ Sbjct: 179 YGRYNISLASHSVTVSINTDLLA--TPEFRELRRLG-VYLKEIGDAP-YKLNVDGEITNF 234 Query: 539 LTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 T E +EQ R K VQR+KGLGEMNP QL ETT+DP +R L ++ I+D Sbjct: 235 ETLTEFVSFVEQ--RGKKGLGVQRYKGLGEMNPEQLWETTVDPQSRTLYRVRIED 287 >UniRef50_Q7UUI4 DNA gyrase subunit B n=1 Tax=Rhodopirellula baltica RepID=Q7UUI4_RHOBA Length = 243 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 20/207 (9%) Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV-------- 461 ++TEL +VEGDSA S Q RD Q+++ L+GK +N + S L ++ + Sbjct: 29 DQTELVIVEGDSAAKSVNQVRDTTRQSVLALQGKPMNVAKASRSVALRNEVLIRFASTLL 88 Query: 462 -HDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 H +S + + RY ++ +L D D+DG+H L+ ++ L++ V Sbjct: 89 DHKLSASEDWIEALRKADRCRYARLVVLMDPDADGIHCGVLVLGFLLRFAPQLLQERRVC 148 Query: 521 VALPP--LYRI------DLGKEVYYALTEEEKEG-VLEQLKRKKGKPNVQRF--KGLGEM 569 V PP L+RI G ++ + +E + G + +RF +GLG + Sbjct: 149 VVRPPMFLFRIRGTTADQAGVQIRTLVASNPDHARRMEAKLTEAGMSDYERFRHRGLGSI 208 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDEDD 596 P LR +DP++R +++ ++ D Sbjct: 209 PPDVLRTCCVDPSSRAADEMSREEAAD 235 >UniRef50_C1ZHM4 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHM4_PLALI Length = 325 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 135/350 (38%), Gaps = 78/350 (22%) Query: 13 LTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVID 69 T LE +R+RP MY +T N HL E++DN++D+ LA A V+V + + LE D Sbjct: 3 FTDLEAIRKRPAMYVGSTDVNGLHHLFNELLDNAIDQYLANQATYVEVHT-SGEILEFTD 61 Query: 70 DGRGMPVD-IHPEEGVPA-VELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVE 127 DG G+P + P G A L RL ++ + G G G+ ++ AL++ E Sbjct: 62 DGPGLPFEKPGPHSGSLADYYLTHIRLDTPTADNHTPHIHLSGW-GCGLRIITALTETCE 120 Query: 128 VNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHV 187 V R+ + +F G +VG +R GT+ D F S + R+ Sbjct: 121 VTSSRNHLAWKQSFSRGISNGPPHIVGHTSER--GTTFRLSIDRDLF-SGDWCQHRMNQR 177 Query: 188 LKAKAVLCPGV--------------------EITFKDEINNTEQRWCYQDGLNDYLAEAV 227 L A L PG+ + + N ++ W + D+ +A Sbjct: 178 LIEAAHLFPGLLVKSQGLHFKTLRGLADLAANVAHEKNSPNPDRIWWFNAVFEDFHLQAA 237 Query: 228 NGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 AG +W +S+ N T++ GTH Sbjct: 238 --------------IAGTDSETEW-------------KSFANGNLTIENGTH-------- 262 Query: 288 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 L A++ E N+ P A + V + +P+F+G T+ +L Sbjct: 263 LTALQRVIEACNLRP-------------AAAFIHVIISNPRFSGPTRSKL 299 >UniRef50_C7UEA1 Predicted protein n=22 Tax=Enterococcus faecalis RepID=C7UEA1_ENTFA Length = 342 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 15/240 (6%) Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGE-KVQDLQVVGTCGKRNTGTSVHFWPDETFF 174 +SV+ A SK+V +++ ++ Q + G+ K + L + +R V FWPD F Sbjct: 93 LSVLQAFSKQVGISIDQEKQRTIFIYHQGQLKKRLLLPIEETQER---IEVLFWPDTQIF 149 Query: 175 DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ-DGLNDYLAEAVNGLPTL 233 + S R+ + A+L PG++I E ++ CY GL++YL E N L T Sbjct: 150 GTESLSYMRVLQQCQQIAMLNPGLKILLTQE--EEQKNLCYYPKGLSNYLFEKDNPL-TR 206 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVN-LIPTMQGGTHVNGLRQGLLDAMR 292 P I A TE + + +++VN P++ GGTH G G++ A Sbjct: 207 KAAPIIQ--AKQTELALVQFILSKNHAPQVQKTFVNGHYPSL-GGTHYEGFLDGVVAAFN 263 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 +F E ++ + ++A+ +VL++ + P++ TK L + + V VV D Sbjct: 264 QFLEEQH---YSLSVTADSFLAEFDFVLAITIPKPRYTDATKTILRNTELYEVVKEVVFD 320 >UniRef50_D2PP74 GCN5-related N-acetyltransferase n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PP74_9ACTO Length = 337 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 72/142 (50%), Gaps = 5/142 (3%) Query: 34 HLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCR 93 HL EVI +DEA+ G +V V+LHAD S+ V D+GRG V + GVP V+ I+ Sbjct: 172 HLALEVIAYPLDEAVEGTTTQVRVVLHADGSIAVSDNGRGTAVRFD-DGGVPMVKPIMAT 230 Query: 94 LHAGGKFSNKNYQFSGGLHGVGISVVNALSK-RVEVNVRRDGQVYNIAFENGEKVQDLQV 152 + + GL G+SV ALS+ V N R +G + +E+G L Sbjct: 231 RDLRFFADPDSPRLPDGLPRAGMSVPIALSEWAVHTNHRTEGS-WTRRYEHGMPRGALTA 289 Query: 153 VGTCGKRNTGTSVHFWPDETFF 174 V +TGT++HF PD T F Sbjct: 290 V--PADSSTGTTIHFRPDRTLF 309 >UniRef50_Q6Y3A9 Gyrase B (Fragment) n=1 Tax=Pelobacter acidigallici RepID=Q6Y3A9_PELAC Length = 277 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 6/188 (3%) Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 +SVVNALSK +E+ +R D +++ G V L G KR GT V F P+E F+ Sbjct: 1 VSVVNALSKWLELEIRGDEKLFPPILPGGGXVAPLAETGATRKR--GTKVTFMPEEEIFE 58 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKD-EINNTEQRWCYQDGLNDYLAEAVNGLPTLP 234 + FS L+ L+ A L GV I D ++N + Y+ G+N ++ + Sbjct: 59 TTEFSFDVLSQRLRELAFLNAGVRIGISDMRVDNKSHEFYYEGGINSFVEYLNRNKIAVH 118 Query: 235 EKPFIGNFAGDTEAVDWAL-LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 KP F G+ V+ + + + + S+ N I T +GGTH+ G + L M Sbjct: 119 PKPIY--FRGEKGGVETEVSMQYNDSFDEKIFSFANNINTHEGGTHLVGFKAALTRTMNA 176 Query: 294 FCEYRNIL 301 + N+L Sbjct: 177 YAAANNLL 184 >UniRef50_A0MYL3 DNA gyrase B (Fragment) n=14 Tax=Streptomyces RepID=A0MYL3_9ACTO Length = 138 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Query: 111 LHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD 170 LHGVG+SVVNALS RV V V+ DG + ++ G V + TGTSV FW D Sbjct: 1 LHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKFG--VPTAPLARNEATDETGTSVTFWAD 58 Query: 171 ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 F++ +S L+ + A L G+ I DE Sbjct: 59 GGIFETTEYSFETLSRRFQEMAFLNKGLTIKLTDE 93 >UniRef50_A7C3L4 Topoisomerase B subunit n=1 Tax=Beggiatoa sp. PS RepID=A7C3L4_9GAMM Length = 337 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 80/331 (24%), Positives = 138/331 (41%), Gaps = 44/331 (13%) Query: 17 EPVRRRPGMY---TDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRG 73 + VR+RPGMY ++ N + E++ N+VD LAG AK++++ ++ + + DDG G Sbjct: 15 QAVRKRPGMYFGDIESGGANTVVYEIVANAVDIFLAGLAKKINIEVNNNNIIIS-DDGPG 73 Query: 74 MP-VDIHPEE-GVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR 131 P P++ + VE L H N G+G++V+NA SK++ + Sbjct: 74 FPFFKASPQDTSINLVEYYLTNFHNSPTADNHAPHIHILGRGLGLAVLNAASKKLAIESS 133 Query: 132 RDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAK 191 +++ F GE + G TG+ V D FD+ + L + Sbjct: 134 DGEKLWTQNF--GEGMVLSPATHESGNFPTGSKVSITLDPMVFDNHGPNSFELRKIFFEV 191 Query: 192 AVLCPGVEITFKDEINNTEQRWCY--QDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAV 249 L PG+ I F+ E C+ +GL D + + P + F + + Sbjct: 192 VHLYPGLSIEFEKE--------CFYSNNGLVDLGYILLKKSASYMGMPKMFRFHYQKKGI 243 Query: 250 DWALLWL---PEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVK 306 ++ + L EG E S+VN +++ G+H GL L + Sbjct: 244 EFQVAALGDSKEGTEF--RSWVNGCASVENGSHAKGLSSAL------------------R 283 Query: 307 LSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 L+ W ++ V M DP+FAG ++ L Sbjct: 284 LNK---WKPEIALIHVIMHDPKFAGPCRDAL 311 >UniRef50_A7K5X7 DNA gyrase subunit B n=5 Tax=Gammaproteobacteria RepID=A7K5X7_VIBSE Length = 246 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 3/63 (4%) Query: 561 QRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 QR+KGLGEMNP QL ETT+DP TRR++Q+TI ED D + L+ + E RRN+++ Sbjct: 179 QRYKGLGEMNPDQLWETTMDPETRRMMQVTI--EDAVGADQLFTTLMGDQ-VEPRRNFIE 235 Query: 621 EKG 623 E Sbjct: 236 ENA 238 >UniRef50_Q9K2S8 GyrB protein (Fragment) n=2 Tax=Mycoplasma hominis RepID=Q9K2S8_MYCHO Length = 103 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 1/100 (1%) Query: 127 EVNVRRDGQVYNIAFENGE-KVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLT 185 EV V+RDG+++ F NG V+ L+V+G + TGT++ F PD T + F + Sbjct: 3 EVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDYTIMEKENFDFDTII 62 Query: 186 HVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAE 225 K A L G++IT ++ N + +C++ GL DY+ E Sbjct: 63 DHSKQIAYLNKGLKITVENVEKNIIKVFCFEGGLIDYVKE 102 >UniRef50_C0SNC2 DNA gyrase subunit B (Fragment) n=87 Tax=Lactobacillales RepID=C0SNC2_9STRE Length = 153 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 6/106 (5%) Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD-ETFFDSPRFS 180 LS +++V V ++GQVY + G+ V DL+V+G + TGT+VHF PD E F ++ F Sbjct: 1 LSTQLDVRVHKNGQVYFQEYRRGQVVDDLKVIGETDR--TGTTVHFTPDPEIFTETSEFD 58 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTE---QRWCYQDGLNDYL 223 ++L ++ A L G+ I+ D+ + E + + Y+ G+ Y+ Sbjct: 59 FAKLAKRVQELAFLNKGLRISITDKRDGNEANDKEYHYEGGIVSYV 104 >UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEU4_9VIRU Length = 1103 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 32/230 (13%) Query: 409 LNRTELFLVEGDSAGGSAKQARD----REYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 +N EL + EGDSA A R+ + PL+GK++N S + A++E+ ++ Sbjct: 411 VNDAELLITEGDSAKQLANVGRNAVKRHANMGLYPLRGKLMNAGNSSLKALAANKEISEL 470 Query: 465 SVAIGIDP-DSDDLSQLR---YGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 +GI P DL+ R Y + I D D DG HI+ L L + +L++ Y Sbjct: 471 IQILGITPYKKYDLASARALPYRHLVIFTDQDVDGSHISGLCIQLIMTLVPSLLEVFPDY 530 Query: 521 VA--LPPLYRIDLGK---EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLR 575 + P+ +I GK + +Y T+ E ++ K +V+ +KGLG Sbjct: 531 IKRFATPILKITSGKHAGKTFY--TDAEYREYTDKHPDSKNA-SVKYYKGLG-------- 579 Query: 576 ETTLDPNTRRLVQ------LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 T+ D + ++ +TI++ T+A M + K S +RR +L Sbjct: 580 -TSTDKDAKQYFTEWSKNVITINNTGQPSTEA-MKLAFDAKMSAERREYL 627 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 27/192 (14%) Query: 10 IEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNS----------------VDEALAGH-- 51 ++VLT + + RPGMY P +EV+ + ++E LA Sbjct: 6 MQVLTQHDHILARPGMYVGGVEPVEYNKEVMTMTGPKHVKEMMVPALLKIIEEPLANASD 65 Query: 52 -------AKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN 104 AK + V S I+ ++ P+ +V L + R G F + + Sbjct: 66 ASQNNPVAKNIKVTTDQRDSSIKIETNTKFVIEYVPDGNDYSVALAVSRFMTGTNFGDDD 125 Query: 105 YQFSGGLHGVGISVVNALSKRVEVNVR--RDGQVYNIAFENGEKVQDLQVVGTCGKRNTG 162 F G HG+GI + N SK EV V Q Y+ + N + VV + Sbjct: 126 ESFKLGQHGLGIKLTNVFSKYFEVVVHDPSTKQSYHGIWTNNMYTVEKSVVKKASHKTPY 185 Query: 163 TSVHFWPDETFF 174 S+ F PD +F Sbjct: 186 VSITFIPDLPYF 197 >UniRef50_UPI0000D546F8 DNA gyrase, B subunit n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D546F8 Length = 204 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 4/68 (5%) Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 KKG+ ++ R+KGLGEMNP QL ETTLD R+L+Q+ ++D+ + +M L Sbjct: 131 KKGQ-SISRYKGLGEMNPEQLWETTLDRANRKLLQVKLEDQVNAERQLIM---LMGDDVT 186 Query: 614 DRRNWLQE 621 DR+N++Q+ Sbjct: 187 DRKNFIQD 194 >UniRef50_A6N6C7 DNA gyrase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=A6N6C7_9BACT Length = 353 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 4/126 (3%) Query: 245 DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRG 304 D V+ A+ W E + + N IP GGTH+ LR + + F E N L R Sbjct: 142 DGITVEVAMQW-KESYQENVLCFTNNIPQRDGGTHLTALRAAMPRTLNHFIE-ENELARK 199 Query: 305 VKL--SAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNV 362 K+ + ED+ + VLSVK+ P+F+ QTKE+L S + V VV D +L + Sbjct: 200 AKVETTGEDMREGRTCVLSVKVPPPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKP 259 Query: 363 QAAELL 368 A ++ Sbjct: 260 AEARII 265 >UniRef50_B0YNR7 DNA gyrase subunit B (Fragment) n=7 Tax=Gammaproteobacteria RepID=B0YNR7_9ENTR Length = 205 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/34 (67%), Positives = 29/34 (85%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 +QR+KGLGEMNP QL ETT+DP TRR++Q+ I D Sbjct: 163 IQRYKGLGEMNPGQLWETTMDPETRRMLQVRIKD 196 >UniRef50_C3RSA4 DNA gyrase subunit B (Fragment) n=3 Tax=Lactobacillales RepID=C3RSA4_9ENTE Length = 156 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 6/107 (5%) Query: 123 SKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC---GKRNTGTSVHFWPD-ETFFDSPR 178 S+++EV V ++G+VY F+ G+ DL+V+G G GT VHF PD E F ++ Sbjct: 1 SEKLEVKVFKNGKVYYQDFKRGKINADLKVIGETELHGTEVHGTEVHFVPDPEIFNETTE 60 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTE--QRWCYQDGLNDYL 223 F+ +L ++ A L G+ I+ +D ++ Y+ G+ Y+ Sbjct: 61 FNFDKLATRIRELAFLNRGLHISIEDRRPEEPLFNQYHYEGGIKSYV 107 >UniRef50_A4YWI0 DNA gyrase subunit B GyrB n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YWI0_BRASO Length = 118 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Query: 115 GISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC----GKRNTGTSVHFWPD 170 G+ VVNALS+ ++V V RDG+ + + F G L++ G G GT + F PD Sbjct: 12 GLFVVNALSEWLQVRVWRDGKEHVMRFGRGRSEAPLRITGDAGIVDGAPRRGTEITFCPD 71 Query: 171 ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 F + F +R+ L+ V GV +T D+ Sbjct: 72 ARVFTTVGFDEARIEQSLRRMPVFKVGVTVTLSDQ 106 >UniRef50_Q6E0M3 GyrB (Fragment) n=1 Tax=Bacillus thuringiensis RepID=Q6E0M3_BACTU Length = 116 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 3/106 (2%) Query: 108 SGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHF 167 SGGLHG G + ++ V V R+G+++ +E G V DL+V+G + TGT F Sbjct: 2 SGGLHGCGARLXCLXAQXSXVFVHREGKIHYQKYERGIPVADLKVIGDTDQ--TGTITRF 59 Query: 168 WPD-ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR 212 PD E F ++ + L ++ A L +++T +D+ + +++ Sbjct: 60 KPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKK 105 >UniRef50_D0L8E8 DNA topoisomerase n=22 Tax=cellular organisms RepID=D0L8E8_GORB4 Length = 55 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 3/49 (6%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAG 50 Y A++I + GL+ VR+RPGMY +T +H+ EV+DN VDEA+AG Sbjct: 7 YGAESIAIREGLDVVRKRPGMYIGSTSSRGLHHMLWEVVDNGVDEAMAG 55 >UniRef50_B9PF30 Predicted protein n=6 Tax=cellular organisms RepID=B9PF30_POPTR Length = 252 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 11/55 (20%) Query: 539 LTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 LT+E + G++ +QR+KGLGEMN QL ETT+DPN R +++++I D Sbjct: 175 LTKESRRGLI-----------IQRYKGLGEMNSDQLFETTMDPNKRTMLKVSIKD 218 >UniRef50_Q401L8 DNA gyrase subunit B (Fragment) n=1 Tax=Mycobacterium kansasii RepID=Q401L8_MYCKA Length = 109 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS R+EV ++RDG ++ +E E + Q T + TGT+V FW D F++ + Sbjct: 1 LSTRLEVEIKRDGYEWSQVYEKSEPMGLKQGAPT---KKTGTTVRFWADPNVFETTEYDF 57 Query: 182 SRLTHVLKAKAVLCPGVEITFKDE 205 + L+ A L G+ I D+ Sbjct: 58 ETVARRLQEMAFLNKGLTINLTDQ 81 >UniRef50_Q5FEK8 Putative uncharacterized protein n=1 Tax=Ehrlichia ruminantium str. Welgevonden RepID=Q5FEK8_EHRRW Length = 75 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 20/34 (58%), Positives = 27/34 (79%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 +QRFKGLGEMN QL +TTL+P+TR +++ I D Sbjct: 37 LQRFKGLGEMNTDQLWDTTLNPDTRTFLKIKISD 70 >UniRef50_B4V6F8 Putative uncharacterized protein n=3 Tax=Actinomycetales RepID=B4V6F8_9ACTO Length = 234 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 62/143 (43%), Gaps = 21/143 (14%) Query: 34 HLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCR 93 HL EV+ + DEA + R V LHAD S+ V DDGRG D ++ AV + Sbjct: 51 HLVLEVVAYAADEAESRGGGRCTVTLHADGSVSVADDGRG--TDTRFDDSGRAVRKPV-- 106 Query: 94 LHAGGKFSNKNYQF---------SGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENG 144 + K+ +F G G+SVV ALS + RR G + +E G Sbjct: 107 ------MATKDLRFFDHPEPPPLPDGHPRRGMSVVAALSAWLVHTNRRAGGAWTQRYEYG 160 Query: 145 EKVQDLQVVGTCGKRNTGTSVHF 167 V L V G TGT VHF Sbjct: 161 VPVTGLTPVADDG--TTGTLVHF 181 >UniRef50_A9AY53 Putative uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AY53_HERA2 Length = 329 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 123 SKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVS 182 ++ +++ + GQ Y +++ V LQ+VG+ + + +HF P+ F + S+ Sbjct: 86 AQYCTIDLHKAGQHYQLSYSGEPTVPALQLVGS--SQASCRRIHFVPNHAIFINRTSSIH 143 Query: 183 RLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL 223 + L+ A L G I D + T + Y +GL DYL Sbjct: 144 QFLGSLRGLATLFRGCRIEVVDVMQATTNQLFYPNGLRDYL 184 >UniRef50_A9ZPQ0 DNA gyrase subunit B (Fragment) n=5 Tax=Corynebacterium RepID=A9ZPQ0_9CORY Length = 183 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS RVE ++R+G+ + F+N V D V G R TGT + FW D F++ F Sbjct: 1 LSTRVEAEIKREGKHWYQNFQNA--VPDDLVEG-GNARGTGTKIRFWADPEIFETTEFDY 57 Query: 182 SRLTHVLKAKAVLCPGVEITFKDE 205 + L+ A L G+ I DE Sbjct: 58 DTIARRLQEMAFLNKGLTIELIDE 81 >UniRef50_C8NCI6 DNA gyrase subunit B n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCI6_9GAMM Length = 95 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%) Query: 544 KEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMM 603 + +L L K ++QR+K LGEMN +L ETTLDP RR++Q+ + +D + D + Sbjct: 12 QRSLLALLAEGKKTYDIQRYKDLGEMNSEKLWETTLDPAVRRMLQVQL--KDARLADEIF 69 Query: 604 DMLLAKKRSEDRRNWLQEKGDMAEIEV 630 L+ ++ E R ++++ + A I++ Sbjct: 70 TTLMGEE-VEPHRAFIEDNANSANIDI 95 >UniRef50_Q9FYE9 DNA gyrase subunit B-like protein n=3 Tax=Arabidopsis thaliana RepID=Q9FYE9_ARATH Length = 257 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 5/160 (3%) Query: 198 VEITFKDEINNTEQRWCYQDGLNDYLAEA-VNGLPTLPEKPFIGNFAGDTEAVDWALLWL 256 + ++ + E N+ + + Y GL++++ + P F G T ++ AL W Sbjct: 21 ITVSLEMEDNDPNKEYLYAKGLSEFVTWLNADKKPLHDVLGFRKEINGTT--INIALQWC 78 Query: 257 PEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDR 315 +G Y N I TM GGT+++G++ + + E ++ + + + E + + Sbjct: 79 VDGYSNKILGYANGIRTMDGGTYIDGVKASITRTLNSLVEKSKLVEDKDIIFTEEHVMEG 138 Query: 316 CAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 ++SV + P+F GQT +RL + V V++ + Sbjct: 139 LTCIVSVIVPKPEFEGQT-QRLGNPNVREIVDQSVQECLM 177 >UniRef50_Q8IIJ0 DNA mismatch repair protein MLH1, putative n=8 Tax=Plasmodium RepID=Q8IIJ0_PLAF7 Length = 1016 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 38/196 (19%) Query: 31 RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ----SLEVIDDGRGMPVDIHPEEGVPA 86 RP + +E+++NS+D A + +H ++ SL++IDDG G IH E+ Sbjct: 69 RPCNALKELVENSLD------ANSSSISIHLNKGGLKSLQIIDDGDG----IHKEDL--- 115 Query: 87 VELILCRLHAGGKFSN----KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQ-VYNIAF 141 I+C K SN +N + + G G ++ ++ +S + +R+ Y + Sbjct: 116 --RIVCERFTTSKISNHKDIRNIK-TFGFRGEALASISHVSYLTITSKKRNSPFCYTCNY 172 Query: 142 ENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD--------SPRFSVSRLTHVLKAKAV 193 ++G+ QD V C +N GT + F D+ F++ +P ++ VL+ A+ Sbjct: 173 KDGKPTQDEPTV--CSGKN-GTIIRF--DDLFYNMPARLKTMNPNDEYNKCLEVLQKYAI 227 Query: 194 LCPGVEITFKDEINNT 209 P V T K ++NT Sbjct: 228 HYPNVSFTCKKWLSNT 243 >UniRef50_P23992 DNA topoisomerase small subunit n=1 Tax=Enterobacteria phage T4 RepID=TOPS_BPT4 Length = 160 Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 13/134 (9%) Query: 478 SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYY 537 S + Y + I+ DAD DGL F ++ L + G + P+ +GK+ + Sbjct: 29 SSMNYANVAIMTDADHDGLGSIYPSLLGFFSNWPELFEQGRIRFVKTPVIIAQVGKKQEW 88 Query: 538 ALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDP---------NTRRLVQ 588 T E E + L K +++ KGLG + + RE +P N + L + Sbjct: 89 FYTVAEYESAKDALP----KHSIRYIKGLGSLEKSEYREMIQNPVYDVVKLPENWKELFE 144 Query: 589 LTIDDEDDQRTDAM 602 + + D D R + M Sbjct: 145 MLMGDNADLRKEWM 158 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P43703 DNA topoisomerase 4 subunit B n=456 Tax=Bacteria... 804 0.0 UniRef50_B8FXX0 DNA gyrase subunit B n=70 Tax=Bacteria RepID=B8F... 772 0.0 UniRef50_O50627 DNA gyrase subunit B n=82 Tax=cellular organisms... 762 0.0 UniRef50_Q9X3Y6 DNA gyrase subunit B n=840 Tax=cellular organism... 735 0.0 UniRef50_P21558 DNA gyrase subunit B n=61 Tax=cellular organisms... 717 0.0 UniRef50_Q6GKU0 DNA gyrase subunit B n=143 Tax=cellular organism... 715 0.0 UniRef50_D0MI55 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Bact... 714 0.0 UniRef50_Q2FUD6 DNA gyrase subunit B n=1 Tax=Methanospirillum hu... 711 0.0 UniRef50_Q9A0L0 DNA gyrase subunit B n=56 Tax=cellular organisms... 709 0.0 UniRef50_Q04WF3 DNA gyrase subunit B n=20 Tax=Bacteria RepID=Q04... 700 0.0 UniRef50_P43053 DNA gyrase subunit B n=78 Tax=Bacteria RepID=GYR... 700 0.0 UniRef50_C7M118 DNA gyrase subunit B n=1 Tax=Acidimicrobium ferr... 698 0.0 UniRef50_O51859 DNA gyrase subunit B n=208 Tax=Bacteria RepID=GY... 698 0.0 UniRef50_C7QFM2 DNA gyrase subunit B n=8 Tax=Bacteria RepID=C7QF... 697 0.0 UniRef50_P0AES7 DNA gyrase subunit B n=740 Tax=root RepID=GYRB_E... 695 0.0 UniRef50_Q94BZ7 DNA gyrase subunit B, mitochondrial n=83 Tax=cel... 694 0.0 UniRef50_A5TY73 DNA gyrase subunit B n=542 Tax=Bacteria RepID=GY... 694 0.0 UniRef50_Q2NJM1 DNA gyrase subunit B n=5 Tax=Mollicutes RepID=Q2... 692 0.0 UniRef50_P34031 DNA gyrase subunit B n=54 Tax=Bacteria RepID=GYR... 691 0.0 UniRef50_D0J983 DNA gyrase subunit B n=22 Tax=cellular organisms... 689 0.0 UniRef50_B6GDL9 DNA gyrase subunit B n=2 Tax=Collinsella RepID=B... 688 0.0 UniRef50_B7G298 Predicted protein n=3 Tax=cellular organisms Rep... 688 0.0 UniRef50_P50074 DNA gyrase subunit B, novobiocin-resistant n=117... 686 0.0 UniRef50_Q2S2H3 Type II DNA topoisomerase, B subunit n=3 Tax=Bac... 680 0.0 UniRef50_A9KS52 DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Bac... 680 0.0 UniRef50_A3EQC0 DNA gyrase subunit B n=7 Tax=Bacteria RepID=A3EQ... 677 0.0 UniRef50_B6IVV7 DNA gyrase subunit B n=192 Tax=cellular organism... 677 0.0 UniRef50_B8GXQ0 DNA gyrase subunit B n=17 Tax=cellular organisms... 677 0.0 UniRef50_Q9Z8R3 DNA gyrase subunit B n=80 Tax=cellular organisms... 675 0.0 UniRef50_O67137 DNA gyrase subunit B n=13 Tax=cellular organisms... 673 0.0 UniRef50_B9ZQ26 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thio... 672 0.0 UniRef50_UPI0001A7B046 ATP binding / DNA binding / DNA topoisome... 669 0.0 UniRef50_B3R5I8 DNA topoisomerase IV, subunit B n=15 Tax=Proteob... 668 0.0 UniRef50_B2URM5 DNA gyrase subunit B n=25 Tax=Bacteria RepID=B2U... 667 0.0 UniRef50_B1ZTK2 DNA gyrase subunit B n=194 Tax=cellular organism... 667 0.0 UniRef50_P66938 DNA topoisomerase 4 subunit B n=158 Tax=Bacteria... 663 0.0 UniRef50_D0LFL2 DNA gyrase subunit B n=1 Tax=Haliangium ochraceu... 662 0.0 UniRef50_C4G1I8 Putative uncharacterized protein n=1 Tax=Abiotro... 661 0.0 UniRef50_Q1V1K8 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA... 661 0.0 UniRef50_Q1RHT8 DNA gyrase subunit B n=702 Tax=Proteobacteria Re... 661 0.0 UniRef50_B5YGU1 DNA gyrase subunit B n=9 Tax=Bacteria RepID=B5YG... 660 0.0 UniRef50_B6BRC2 DNA gyrase subunit B n=1 Tax=Candidatus Pelagiba... 658 0.0 UniRef50_UPI0001C311B1 DNA gyrase, B subunit n=1 Tax=Conexibacte... 657 0.0 UniRef50_C1DUC4 DNA gyrase subunit B n=5 Tax=Bacteria RepID=C1DU... 657 0.0 UniRef50_B2UCF3 DNA gyrase subunit B n=47 Tax=Proteobacteria Rep... 656 0.0 UniRef50_P50028 DNA gyrase subunit B n=331 Tax=cellular organism... 648 0.0 UniRef50_Q1MQ88 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q1MQ... 648 0.0 UniRef50_C3XDF7 DNA gyrase subunit B n=5 Tax=Campylobacterales R... 646 0.0 UniRef50_D1BTM8 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Acti... 646 0.0 UniRef50_Q2GD49 DNA gyrase subunit B n=9 Tax=cellular organisms ... 645 0.0 UniRef50_Q89B37 DNA gyrase subunit B n=30 Tax=Proteobacteria Rep... 639 0.0 UniRef50_P94281 DNA gyrase subunit B n=211 Tax=cellular organism... 638 0.0 UniRef50_A6DH73 DNA gyrase subunit B n=7 Tax=cellular organisms ... 638 0.0 UniRef50_D2NTW6 Type IIA topoisomerase, B subunit n=10 Tax=Actin... 638 0.0 UniRef50_A1TI33 DNA gyrase subunit B n=16 Tax=Burkholderiales Re... 637 0.0 UniRef50_A0Q197 DNA topoisomerase IV subunit B n=34 Tax=Clostrid... 635 e-180 UniRef50_Q59526 DNA topoisomerase 4 subunit B n=9 Tax=Bacteria R... 634 e-180 UniRef50_A8LVU4 DNA gyrase subunit B domain protein n=37 Tax=Act... 632 e-179 UniRef50_Q83G36 DNA gyrase subunit B-like protein n=2 Tax=Trophe... 631 e-179 UniRef50_C6PY14 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clos... 631 e-179 UniRef50_B3TAI0 Putative DNA gyrase B n=1 Tax=uncultured marine ... 630 e-179 UniRef50_Q9ZLX3 DNA gyrase subunit B n=50 Tax=Epsilonproteobacte... 629 e-179 UniRef50_D2R8B1 DNA gyrase, B subunit n=80 Tax=Bacteria RepID=D2... 627 e-178 UniRef50_P78016 DNA topoisomerase 4 subunit B n=3 Tax=Mycoplasma... 623 e-177 UniRef50_A1SCM1 DNA gyrase subunit B n=28 Tax=Actinomycetales Re... 621 e-176 UniRef50_D0RQH0 DNA gyrase subunit B n=2 Tax=Bacteria RepID=D0RQ... 621 e-176 UniRef50_C5B4P3 DNA gyrase, subunit B n=1 Tax=Methylobacterium e... 620 e-176 UniRef50_A6G5S5 DNA gyrase subunit B n=11 Tax=Bacteria RepID=A6G... 620 e-176 UniRef50_A0LUT9 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Act... 618 e-175 UniRef50_UPI00016C54E0 DNA gyrase subunit B n=1 Tax=Gemmata obsc... 617 e-175 UniRef50_Q98RQ4 DNA gyrase subunit B n=13 Tax=cellular organisms... 614 e-174 UniRef50_O33367 DNA gyrase subunit B n=6 Tax=Bacteria RepID=GYRB... 611 e-173 UniRef50_Q4AAR9 Topoisomerase IV subunit B n=9 Tax=Mycoplasma Re... 610 e-173 UniRef50_D0WQJ3 Putative DNA gyrase subunit B n=1 Tax=Actinomyce... 604 e-171 UniRef50_C0W359 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Acti... 600 e-170 UniRef50_D1C5K6 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Spha... 589 e-167 UniRef50_D0RNK2 DNA topoisomerase IV, B subunit n=1 Tax=alpha pr... 574 e-162 UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 551 e-155 UniRef50_A7I8U0 DNA gyrase subunit B n=1 Tax=Candidatus Methanor... 549 e-154 UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota Rep... 548 e-154 UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 546 e-153 UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA 542 e-152 UniRef50_UPI0000DA3D74 PREDICTED: similar to topoisomerase (DNA)... 542 e-152 UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=... 542 e-152 UniRef50_A8S818 Putative uncharacterized protein n=6 Tax=Bacteri... 539 e-151 UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota Rep... 537 e-151 UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuni... 534 e-150 UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae R... 532 e-149 UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa C... 532 e-149 UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2... 531 e-149 UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC29... 529 e-149 UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID... 526 e-148 UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2... 526 e-147 UniRef50_Q9FAX1 DNA gyrase subunit B (Fragment) n=60 Tax=Bacteri... 526 e-147 UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group... 519 e-145 UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus AT... 518 e-145 UniRef50_A3DC64 DNA topoisomerase (ATP-hydrolyzing) n=11 Tax=Bac... 516 e-144 UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma poly... 514 e-144 UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermoph... 511 e-143 UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP... 509 e-142 UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalu... 509 e-142 UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyosteli... 508 e-142 UniRef50_Q9FAX2 DNA gyrase subunit B (Fragment) n=166 Tax=root R... 507 e-142 UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae Re... 506 e-141 UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii Re... 505 e-141 UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID... 503 e-141 UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms ... 503 e-140 UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=... 502 e-140 UniRef50_Q9HGH7 DNA topoisomerase 2 (Fragment) n=1 Tax=Pichia ku... 502 e-140 UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dicty... 501 e-140 UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 499 e-139 UniRef50_A6TSS9 DNA gyrase, subunit B domain protein n=1 Tax=Alk... 497 e-139 UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon biene... 497 e-139 UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A... 497 e-139 UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP... 494 e-138 UniRef50_Q1NK64 DNA topoisomerase II:ATP-binding region, ATPase-... 490 e-137 UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS11... 489 e-136 UniRef50_Q18GY2 DNA gyrase subunit B n=10 Tax=cellular organisms... 487 e-136 UniRef50_D2QHC5 DNA topoisomerase type IIA subunit B region 2 do... 485 e-135 UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV... 485 e-135 UniRef50_Q7RHG3 DNA topoisomerase II, putative n=3 Tax=Plasmodiu... 484 e-135 UniRef50_B3LD45 DNA gyrase subunit b, putative n=1 Tax=Plasmodiu... 483 e-134 UniRef50_B1ZME3 DNA topoisomerase type IIA subunit B region 2 do... 479 e-133 UniRef50_B2RL68 DNA topoisomerase IV B subunit n=60 Tax=Bacteria... 478 e-133 UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 477 e-133 UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurel... 476 e-132 UniRef50_P77966 Ssp gyrB intein n=45 Tax=cellular organisms RepI... 470 e-131 UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodact... 468 e-130 UniRef50_Q4UIX0 DNA topoisomerase II, putative n=2 Tax=Theileria... 463 e-129 UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_P... 462 e-128 UniRef50_Q9X3Y5 DNA gyrase subunit B (Fragment) n=740 Tax=cellul... 462 e-128 UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycod... 458 e-127 UniRef50_UPI00016B23A5 DNA gyrase subunit B n=1 Tax=candidate di... 457 e-127 UniRef50_Q10XN8 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q10X... 455 e-126 UniRef50_C7PPD8 DNA topoisomerase type IIA subunit B region 2 do... 452 e-125 UniRef50_Q59189 DNA topoisomerase 4 subunit B n=27 Tax=Bacteria ... 451 e-125 UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassio... 449 e-124 UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginali... 447 e-124 UniRef50_Q44272 DNA gyrase subunit B (Fragment) n=2942 Tax=cellu... 438 e-121 UniRef50_B9U3G6 DNA topoisomerase 2 (Fragment) n=1 Tax=Pleurotus... 437 e-121 UniRef50_A7ASL8 DNA gyrase subunit B, putative n=1 Tax=Babesia b... 435 e-120 UniRef50_A1EGM8 DNA gyrase subunit B (Fragment) n=1 Tax=uncultur... 431 e-119 UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO 428 e-118 UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepI... 426 e-117 UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infesta... 422 e-116 UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 ... 422 e-116 UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae Re... 421 e-116 UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV 420 e-116 UniRef50_C9DGI8 Gp60plus39 DNA topoisomerase subunit n=1 Tax=Def... 412 e-113 UniRef50_C8XUB6 Topoisomerase II large subunit n=1 Tax=Shigella ... 412 e-113 UniRef50_UPI0001976865 DNA topoisomerase (ATP-hydrolyzing) n=1 T... 411 e-113 UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon... 411 e-113 UniRef50_A3Q8K7 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Myco... 411 e-113 UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q... 406 e-111 UniRef50_A5K8Q8 DNA gyrase subunit b, putative n=1 Tax=Plasmodiu... 403 e-110 UniRef50_Q8GD47 DNA gyrase subunit B (Fragment) n=21 Tax=Bacteri... 402 e-110 UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis... 399 e-109 UniRef50_D2RAT5 DNA gyrase, B subunit, C-terminal domain protein... 395 e-108 UniRef50_D2QB32 GyrB2 DNA gyrase subunit B n=8 Tax=Bifidobacteri... 395 e-108 UniRef50_B6XTR9 Putative uncharacterized protein n=2 Tax=Bifidob... 391 e-107 UniRef50_B6EUG7 DNA gyrase subunit B (Fragment) n=6 Tax=Actinomy... 389 e-106 UniRef50_Q2JC55 DNA topoisomerase II n=4 Tax=Actinomycetales Rep... 389 e-106 UniRef50_A6N697 DNA gyrase subunit B (Fragment) n=2 Tax=uncultur... 379 e-103 UniRef50_C3IT50 DNA gyrase subunit B n=3 Tax=Bacillus thuringien... 370 e-100 UniRef50_Q6UGM9 DNA gyrase B subunit (Fragment) n=1 Tax=Fusobact... 365 2e-99 UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 362 2e-98 UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2... 359 2e-97 UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepI... 352 2e-95 UniRef50_Q56C43 Gp60plus39 DNA topoisomerase subunit n=3 Tax=T4-... 352 2e-95 UniRef50_Q76Z86 Topoisomerase II large subunit n=1 Tax=Aeromonas... 347 6e-94 UniRef50_B2ZYK3 Type IIA topoisomerase n=1 Tax=Ralstonia phage R... 345 2e-93 UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5... 340 1e-91 UniRef50_C0DAN0 Putative uncharacterized protein (Fragment) n=1 ... 340 1e-91 UniRef50_Q0QCK3 ParE (Fragment) n=163 Tax=cellular organisms Rep... 338 3e-91 UniRef50_Q196X4 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 335 3e-90 UniRef50_B4V0A2 DNA gyrase subunit B n=1 Tax=Streptomyces sp. Mg... 334 7e-90 UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses... 329 2e-88 UniRef50_Q04PE7 DNA topoisomerase (ATP-hydrolyzing), subunit B n... 317 7e-85 UniRef50_B5H7D6 DNA gyrase subunit B n=2 Tax=Streptomyces RepID=... 313 1e-83 UniRef50_Q8I528 Term=DNA gyrase subunit B;evidence=inferred from... 308 4e-82 UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole geno... 285 3e-75 UniRef50_P09176 DNA topoisomerase large subunit n=13 Tax=T4-like... 274 9e-72 UniRef50_C9E3K9 DNA gyrase subunit B (Fragment) n=1 Tax=Rhodococ... 265 3e-69 UniRef50_A3SXB5 DNA topoisomerase IV subunit B n=1 Tax=Sulfitoba... 263 1e-68 UniRef50_A8NKQ4 Putative uncharacterized protein n=1 Tax=Coprino... 258 4e-67 UniRef50_B1N7R8 Gyrase b (Fragment) n=1 Tax=uncultured bacterium... 257 9e-67 UniRef50_B3SFQ4 Putative uncharacterized protein (Fragment) n=1 ... 248 6e-64 UniRef50_B4YQA0 DNA gyrase subunit B (Fragment) n=1 Tax=Lactobac... 246 2e-63 UniRef50_A7XYG8 GyrB (Fragment) n=6 Tax=Chlamydia trachomatis Re... 244 1e-62 UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea Rep... 226 2e-57 UniRef50_A9CRV4 DNA gyrase subunit B (Fragment) n=2 Tax=Bradyrhi... 222 3e-56 UniRef50_Q2SFQ7 Type IIA topoisomerase (DNA gyrase/topo II, topo... 221 7e-56 UniRef50_Q1CZR7 DNA gyrase, B subunit, truncated n=1 Tax=Myxococ... 220 1e-55 UniRef50_UPI00016C4A69 DNA gyrase subunit B n=2 Tax=Gemmata obsc... 214 1e-53 UniRef50_C5Z2Y6 Putative uncharacterized protein Sb10g016438 (Fr... 208 5e-52 UniRef50_B1PJM5 DNA gyrase subunit B (Fragment) n=1 Tax=Micromon... 204 7e-51 UniRef50_UPI0001C4799C UPI0001C4799C related cluster n=1 Tax=unk... 202 4e-50 UniRef50_D2J2Q7 DNA gyrase subunit B (Fragment) n=7 Tax=Coryneba... 201 8e-50 UniRef50_C0F8C8 DNA gyrase, B subunit (Fragment) n=1 Tax=Wolbach... 191 6e-47 UniRef50_D1AIT2 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Seba... 191 7e-47 UniRef50_C1ZHM4 Type IIA topoisomerase (DNA gyrase/topo II, topo... 189 3e-46 UniRef50_Q6Y3A9 Gyrase B (Fragment) n=1 Tax=Pelobacter acidigall... 183 2e-44 UniRef50_A7C3L4 Topoisomerase B subunit n=1 Tax=Beggiatoa sp. PS... 183 2e-44 UniRef50_UPI0001788AA3 transcriptional regulator, ArsR family n=... 163 2e-38 UniRef50_A6N6C7 DNA gyrase subunit B (Fragment) n=1 Tax=uncultur... 154 8e-36 UniRef50_Q44273 DNA gyrase subunit B (Fragments) n=5 Tax=Acineto... 149 3e-34 UniRef50_Q7UUI4 DNA gyrase subunit B n=1 Tax=Rhodopirellula balt... 146 2e-33 UniRef50_C0SNC2 DNA gyrase subunit B (Fragment) n=87 Tax=Lactoba... 145 4e-33 UniRef50_A6G3Y8 Type IIA topoisomerase (DNA gyrase/topo II, topo... 143 1e-32 UniRef50_C7UEA1 Predicted protein n=22 Tax=Enterococcus faecalis... 141 8e-32 UniRef50_UPI0001908742 DNA topoisomerase IV subunit B n=1 Tax=Rh... 139 3e-31 UniRef50_Q6Y3B0 Gyrase B (Fragment) n=1 Tax=Geobacter pelophilus... 137 1e-30 UniRef50_C3RSA4 DNA gyrase subunit B (Fragment) n=3 Tax=Lactobac... 137 1e-30 UniRef50_A8V367 Gyrase B (Fragment) n=1 Tax=Hydrogenivirga sp. 1... 131 5e-29 UniRef50_C1SL26 DNA gyrase subunit B n=1 Tax=Denitrovibrio aceti... 130 1e-28 UniRef50_A0MYL3 DNA gyrase B (Fragment) n=14 Tax=Streptomyces Re... 128 5e-28 UniRef50_Q2B8E8 DNA gyrase, B subunit n=1 Tax=Bacillus sp. NRRL ... 128 6e-28 UniRef50_A5M9T1 DNA gyrase subunit B n=2 Tax=Streptococcus pneum... 128 7e-28 UniRef50_D2PP74 GCN5-related N-acetyltransferase n=1 Tax=Kribbel... 127 1e-27 UniRef50_UPI00016B21F7 DNA gyrase subunit B n=1 Tax=candidate di... 121 1e-25 UniRef50_B1PL25 DNA gyrase subunit B (Fragment) n=79 Tax=Bacteri... 111 7e-23 UniRef50_Q9K2S8 GyrB protein (Fragment) n=2 Tax=Mycoplasma homin... 108 5e-22 UniRef50_Q6E0M3 GyrB (Fragment) n=1 Tax=Bacillus thuringiensis R... 108 6e-22 UniRef50_UPI0000382E10 COG0187: Type IIA topoisomerase (DNA gyra... 102 3e-20 UniRef50_A4YWI0 DNA gyrase subunit B GyrB n=1 Tax=Bradyrhizobium... 99 4e-19 UniRef50_Q401L8 DNA gyrase subunit B (Fragment) n=1 Tax=Mycobact... 99 4e-19 UniRef50_A7K5X7 DNA gyrase subunit B n=5 Tax=Gammaproteobacteria... 86 4e-15 UniRef50_B9PF30 Predicted protein n=6 Tax=cellular organisms Rep... 78 1e-12 UniRef50_UPI0000D546F8 DNA gyrase, B subunit n=1 Tax=Psychroflex... 71 1e-10 UniRef50_D0L8E8 DNA topoisomerase n=22 Tax=cellular organisms Re... 71 1e-10 Sequences not found previously or not previously below threshold: UniRef50_Q00942 DNA topoisomerase 2 n=7 Tax=African swine fever ... 214 6e-54 UniRef50_Q9FYE9 DNA gyrase subunit B-like protein n=3 Tax=Arabid... 136 2e-30 UniRef50_UPI0001698B4B DNA gyrase, B subunit n=1 Tax=Endoriftia ... 127 1e-27 UniRef50_A0BK45 Chromosome undetermined scaffold_111, whole geno... 111 6e-23 UniRef50_C7P9T7 Type IIA topoisomerase (DNA gyrase/topo II topoi... 111 7e-23 UniRef50_A9ZPQ0 DNA gyrase subunit B (Fragment) n=5 Tax=Coryneba... 111 1e-22 UniRef50_Q9F8M6 DNA gyrase subunit B (Fragment) n=1 Tax=Carboxyd... 104 1e-20 UniRef50_B9XLD1 Type IIA topoisomerase (DNA gyrase/topo II topoi... 101 8e-20 UniRef50_Q23CP4 DNA topoisomerase 2 n=3 Tax=Tetrahymena thermoph... 101 9e-20 UniRef50_P23992 DNA topoisomerase small subunit n=1 Tax=Enteroba... 99 6e-19 UniRef50_B4V6F8 Putative uncharacterized protein n=3 Tax=Actinom... 98 1e-18 UniRef50_A9DKM1 DNA gyrase subunit B n=1 Tax=Kordia algicida OT-... 73 4e-11 UniRef50_A9AY53 Putative uncharacterized protein n=1 Tax=Herpeto... 72 6e-11 UniRef50_C5Z2Y8 Putative uncharacterized protein Sb10g016467 (Fr... 70 3e-10 UniRef50_B2G4Y3 GyrB protein (Fragment) n=1 Tax=Bacillus sp. AKG... 70 4e-10 UniRef50_C8NCI6 DNA gyrase subunit B n=1 Tax=Cardiobacterium hom... 69 5e-10 UniRef50_Q070G1 GyrB-like ATPase domain protein n=1 Tax=Crocodil... 68 1e-09 UniRef50_D1S521 Type IIA topoisomerase (DNA gyrase/topo II topoi... 63 3e-08 UniRef50_UPI0001B56D9F DNA gyrase subunit B n=1 Tax=Streptomyces... 61 1e-07 UniRef50_B9IF46 Predicted protein n=2 Tax=Eukaryota RepID=B9IF46... 61 2e-07 >UniRef50_P43703 DNA topoisomerase 4 subunit B n=456 Tax=Bacteria RepID=PARE_HAEIN Length = 632 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 483/632 (76%), Positives = 558/632 (88%), Gaps = 2/632 (0%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 MT Y+A I VL LEPV+ RPGMYTDTTRPNHL QEVIDNSVDEALAG A +++VILH Sbjct: 1 MTTNYSAQEITVLKDLEPVQIRPGMYTDTTRPNHLAQEVIDNSVDEALAGFATKIEVILH 60 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 DQS+EV D+GRGMPVDIHP EGV VE+IL +LHAGGKFSNKNY+F+GGLHGVGISVVN Sbjct: 61 PDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGISVVN 120 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS+RV++ V+R+G++Y IAFENG KV++L+++GTCG+R TGT VHF P+ +FDS +FS Sbjct: 121 ALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTIVHFKPNPKYFDSAKFS 180 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240 VSRL H+L+AKAVLC G+EI F D++NNT+ W Y+DGL+DYL EAVNG TLP+KPF+G Sbjct: 181 VSRLRHLLRAKAVLCSGLEIKFIDKVNNTQDIWLYEDGLSDYLIEAVNGFETLPKKPFVG 240 Query: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300 F G EAV WALLWLPEGGEL+ ESYVNLIPT+QGGTHVNGLRQGLLDA+REFCE+RN+ Sbjct: 241 EFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFCEFRNL 300 Query: 301 LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ 360 LPRGVKL+A+DIWDRC+Y+LS+KMQD QFAGQTKERLSSRQ A FVSGV+KDAF LWLNQ Sbjct: 301 LPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAFSLWLNQ 360 Query: 361 NVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGD 420 NVQ AE LAE+AISSAQRR+RAAKKVVRKKL SGPALPGKLADC +QDL +TELFLVEGD Sbjct: 361 NVQDAEKLAEIAISSAQRRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEKTELFLVEGD 420 Query: 421 SAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQL 480 SAGGSAKQARDREYQAI+PL+GKILNTWEVS D+VL S E+HDI+VA+GIDPDS+DLSQL Sbjct: 421 SAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIAVALGIDPDSNDLSQL 480 Query: 481 RYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALT 540 RYGK+CILADADSDGLHIATLLCALF++HF LV+ GHVYVA+PPLYRIDL KEV+YAL Sbjct: 481 RYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRIDLNKEVFYALD 540 Query: 541 EEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTD 600 E EKE +L++LK KKGKPNVQRFKGLGEMNP QLRETT+DPNTRRLVQLT D +DQ +D Sbjct: 541 ENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYDLGEDQGSD 600 Query: 601 --AMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 +MDMLLAKKRSEDR+NWLQ KGD ++ V Sbjct: 601 TLELMDMLLAKKRSEDRKNWLQAKGDQVDLSV 632 >UniRef50_B8FXX0 DNA gyrase subunit B n=70 Tax=Bacteria RepID=B8FXX0_DESHD Length = 644 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 248/638 (38%), Positives = 370/638 (57%), Gaps = 15/638 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 T YNA IEVL GLE VR+RPGMY +T +HL E++DNS+DEALAG+ ++V Sbjct: 13 TNDYNAGQIEVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGYCDTIEVT 72 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 +H D S+ V+D+GRG+PVDIHP+ G PAVE+ L LHAGGKFS Y+ SGGLHGVG+SV Sbjct: 73 IHKDNSISVVDNGRGIPVDIHPKLGKPAVEVALTVLHAGGKFSGSAYKVSGGLHGVGMSV 132 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS + V VR+DG +Y+ F G+ +L V+G TGT++ F PD F+ Sbjct: 133 VNALSTWLHVEVRKDGNIYHQEFMRGKTKTELAVIGQVDPNQTGTTITFSPDPEIFEDTV 192 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 F L H L+ + L V IT D + ++ + + G+ D++ +L +P Sbjct: 193 FLFDTLAHRLRELSFLNKKVSITLIDAREDKKEVYYHTGGIYDFVKYINRSKESLHPEPI 252 Query: 239 IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 D V+ ++ + E L SY N I T +GGTH +G + L ++ Sbjct: 253 YFEAEKDGVQVEVSMQYNDGYVENLF-SYANNIHTHEGGTHESGFKAALTRVANDYARKN 311 Query: 299 NILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 NIL LS EDI + V+SVK+ +PQF GQTK +L + + + V + + + Sbjct: 312 NILKANEANLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEIRSIVDSITGEGLSAF 371 Query: 358 LNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTEL 414 +N + + E +I +++ R A K RK ALPGKLADC+ ++ E+ Sbjct: 372 FEENPAIGKKVIEKSIQASRAREAARKARELTRRKSALEVSALPGKLADCSWKEAELCEM 431 Query: 415 FLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS 474 ++VEGDSAGGSAKQ RDR +QAI+PL+GKILN + D +L + E+ + A+G Sbjct: 432 YIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIRAMITAMGTGISE 491 Query: 475 D-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 D D+ + RY K+ I+ DAD DG HI LL F ++ + L+++ +VY+A PPL+++ GK Sbjct: 492 DFDIEKARYHKLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYIAQPPLFKVKKGK 551 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 +++Y + EE + +++ R + +QR+KGLGEMN QL ETT+DP R ++Q+T+ Sbjct: 552 DIHYVYSNEELAKLQDEIGRDR--VEIQRYKGLGEMNAEQLWETTMDPAKRTILQVTM-- 607 Query: 594 EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 ED + D + +L+ E RR ++Q+ ++V Sbjct: 608 EDAIKADELFTILMG-DVVEPRREFIQDNAQYVRNLDV 644 >UniRef50_O50627 DNA gyrase subunit B n=82 Tax=cellular organisms RepID=GYRB_BACHD Length = 637 Score = 762 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 254/639 (39%), Positives = 376/639 (58%), Gaps = 18/639 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y+ I+VL GLE VR+RPGMY +T +HL E++DNS+DEA+AG + V++ Sbjct: 6 QAYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSIDEAMAGFCDEIGVVI 65 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D S+ V D+GRG+PV IH + G PAVE+I+ LHAGGKF Y+ SGGLHGVG SVV Sbjct: 66 EEDNSITVTDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 125 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPR 178 NALS +EV V R+G+V+ F G DL+V+GT + TGT +HF PD F ++ Sbjct: 126 NALSTMLEVEVHREGKVHYQKFHRGVPAADLEVIGTTDR--TGTKIHFKPDGDIFTETTV 183 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-QRWCYQDGLNDYLAEAVNGLPTLPEKP 237 F L L+ A L G+ I D + + Y+ G+ ++ TL E P Sbjct: 184 FEYDTLASRLRELAFLNKGLRIKITDMREEEKSDEFHYEGGIASFVEHLNRTRETLHETP 243 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 V+ A+ + +G S+ N I T +GGTH +G + GL + ++ Sbjct: 244 IHIEGEKQGVYVEIAVQYN-DGFTSNIYSFANNINTHEGGTHESGFKTGLTRVINDYARK 302 Query: 298 RNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 N+ L+ ED+ + ++SVK+ DPQF GQTK +L + + + + F Sbjct: 303 HNLFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFSR 362 Query: 357 WLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTE 413 +L ++ Q A L + + +++ R A K RK +LPGKLADC+++D + +E Sbjct: 363 FLIEHPQVARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSRDASISE 422 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP- 472 +++VEGDSAGGSAKQ RDR +QAI+PL+GKILN + D++LA+ E+ I A+G Sbjct: 423 IYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALGTGIG 482 Query: 473 DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG 532 D D+ + RY KI I+ DAD DG HI TL+ F ++ R L++HG+VY+A PPLY++ G Sbjct: 483 DDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQG 542 Query: 533 KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTID 592 K++ YA + E + +L QL K KP +QR+KGLGEMNP QL ETT+DP R ++Q+T+ Sbjct: 543 KDIQYAYGDAELQEILSQLPD-KAKPGIQRYKGLGEMNPSQLWETTMDPGQRTVLQVTL- 600 Query: 593 DEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE-IEV 630 ED + D + ++L+ R E RR+++QE + +++ Sbjct: 601 -EDAMKADEIFEILMG-DRVEPRRDFIQENARYVKNLDI 637 >UniRef50_Q9X3Y6 DNA gyrase subunit B n=840 Tax=cellular organisms RepID=GYRB_BACAN Length = 640 Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats. Identities = 244/639 (38%), Positives = 376/639 (58%), Gaps = 18/639 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 +Y+ I+VL GLE VR+RPGMY +T +HL E++DNS+DEALAG+ ++V + Sbjct: 9 NSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 68 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D S+ V D+GRG+PV I + G PAVE+I+ LHAGGKF Y+ SGGLHGVG SVV Sbjct: 69 EEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 128 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPR 178 NALS +EV V R+G+++ +E G V DL+V+G TGT F PD F ++ Sbjct: 129 NALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTD--QTGTITRFKPDPEIFQETTV 186 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR-WCYQDGLNDYLAEAVNGLPTLPEKP 237 + L ++ A L +++T +D+ + +++ + Y+ G+ Y+ + E+P Sbjct: 187 YEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEP 246 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 + D V+ +L + EG S+ N I T +GGTH G + L + ++ Sbjct: 247 VYVEGSKDGIQVEVSLQYN-EGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRK 305 Query: 298 RNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 +IL L+ ED+ + ++S+K +PQF GQTK +L + + V +AF Sbjct: 306 NSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEK 365 Query: 357 WLNQNVQAAELLAEM---AISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTE 413 +L +N A + E A + +A + RK +LPGKLADC+++D +E Sbjct: 366 FLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISE 425 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP- 472 +++VEGDSAGGSAKQ RDR +QAI+PLKGKI+N + D++L++ EV I AIG + Sbjct: 426 IYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIG 485 Query: 473 DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG 532 D+ + RY K+ I+ DAD DG HI TLL F ++ R +++HG++Y+A PPL+++ G Sbjct: 486 GDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQG 545 Query: 533 KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTID 592 K++ YA E+E E +L +L + KP +QR+KGLGEMNP QL ETT+DP R L+Q+++ Sbjct: 546 KKIQYAYNEKELEKILAELP-AQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSL- 603 Query: 593 DEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE-IEV 630 +D D ++L+ + E RRN++QE + +++ Sbjct: 604 -QDAIEADETFEILMG-DKVEPRRNFIQENAKYVKNLDI 640 >UniRef50_P21558 DNA gyrase subunit B n=61 Tax=cellular organisms RepID=GYRB_HALSQ Length = 639 Score = 717 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 247/636 (38%), Positives = 362/636 (56%), Gaps = 16/636 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y A I+VL GLE VR+RP MY +T +HL EV+DNS+DEALAGH ++V L Sbjct: 5 NEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAIEVAL 64 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S+ V D+GRG+PV H + PA+E+I+ LHAGGKF NK+YQ SGGLHGVG++VV Sbjct: 65 HEDGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGKFDNKSYQVSGGLHGVGVTVV 124 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQD--LQVVGTCGKRNTGTSVHFWPDETFFDSP 177 NALS +EV V+ DG V+ FE GE + +V +TGT++ FWPD+ F++ Sbjct: 125 NALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGIFETT 184 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 F L + L+ A L GVEI+ DE + + ++ G+ +++ L + Sbjct: 185 EFDFKTLENRLRELAFLNSGVEISLSDERTDESSTFLFEGGIREFVEYLNETKTALHDDV 244 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 + + V+ A+ E + ++ N I T +GGTH+ G + L + ++ Sbjct: 245 IYYDDESEGIEVEIAMQATDEL-QGSIHAFANNINTREGGTHLTGFKTALTRVVNDYANS 303 Query: 298 RNILP--RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 ++L G L ED+ + V+SVK DPQF GQTK +L + + V V Sbjct: 304 HDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESVTHQQLG 363 Query: 356 LWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRT 412 + +N A + A+ +A+ R A + RK +LPGKLADC ++D + + Sbjct: 364 TFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPSES 423 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 ELF+VEGDSAGGSAKQ RDR++QAI+PLKGKILN + D +L + E+ + AIG Sbjct: 424 ELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITAIGGGV 483 Query: 473 -DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 D D+ + RY ++ ++ DAD DG HI TLL L +H R L++ G+VY A PPLYR+ Sbjct: 484 GDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLYRVRY 543 Query: 532 GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 Y A+ E E++ ++E+ VQRFKGLGEMNP QL +TT++P R L ++T+ Sbjct: 544 RGNTYDAMDEAERDRIIEEECN-GNPTQVQRFKGLGEMNPDQLWDTTMNPENRVLKRITV 602 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 ED D M ++L+ R+ ++++ + AE Sbjct: 603 --EDAAAADRMFNILMG-DAVGPRKQFIKDHANDAE 635 >UniRef50_Q6GKU0 DNA gyrase subunit B n=143 Tax=cellular organisms RepID=GYRB_STAAR Length = 644 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 247/640 (38%), Positives = 365/640 (57%), Gaps = 19/640 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 T Y A I+VL GLE VR+RPGMY +T +HL E++DNS+DEALAG+A +++V+ Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 + D ++V D+GRG+PVDI + G PAVE+IL LHAGGKF Y+ SGGLHGVG SV Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSV 130 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSP 177 VNALS+ +EV V R+ +Y+ A++ G DL+ VGT K TGT + F D F ++ Sbjct: 131 VNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTDK--TGTVIRFKADGEIFTETT 188 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEI---NNTEQRWCYQDGLNDYLAEAVNGLPTLP 234 ++ L ++ A L G++IT +DE N E + Y+ G+ Y+ + Sbjct: 189 VYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNENKEPIH 248 Query: 235 EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 ++P + + D V+ A+ + G +Y N I T +GGTH +G ++ L + + Sbjct: 249 DEPIYIHQSKDDIEVEIAIQYNS-GYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSY 307 Query: 295 CEYRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 I+ +LS ED + ++S+K DPQF GQTK +L + + V + + Sbjct: 308 GLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEH 367 Query: 354 FILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLN 410 F +L +N Q A + E I +A+ R+ A K RK +LPGKLADC+++ Sbjct: 368 FERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPE 427 Query: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 E+FLVEGDSAGGS K RD QAI+PL+GKILN + D +L + E+ + A G Sbjct: 428 ECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGT 487 Query: 471 DP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 DL++ RY KI I+ DAD DG HI TLL F + R L++ G+VY+A PPLY++ Sbjct: 488 GIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKL 547 Query: 530 DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQL 589 GK+ YY + E + + +L K ++ R+KGLGEMN QL ETT++P R L+Q+ Sbjct: 548 TQGKQKYYVYNDRELDKLKSEL-NPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQV 606 Query: 590 TIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + ED D +ML+ E+RR ++++ A ++ Sbjct: 607 KL--EDAIEADQTFEMLMG-DVVENRRQFIEDNAVYANLD 643 >UniRef50_D0MI55 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Bacteria RepID=D0MI55_RHOM4 Length = 648 Score = 714 bits (1843), Expect = 0.0, Method: Composition-based stats. Identities = 275/644 (42%), Positives = 394/644 (61%), Gaps = 18/644 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDV 57 + TY I+VL GLEPVR+RPGMY T +HL E++DN+VDEA+ G A ++V Sbjct: 4 LAATYTGKDIQVLEGLEPVRKRPGMYIGGTGKPGLHHLLWEIVDNAVDEAVNGFASLIEV 63 Query: 58 ILHADQ-SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 LHAD S+ V D+GRG+PVD HP + +P +ELIL LHAGGKF KNY SGGLHGVG Sbjct: 64 TLHADGRSVTVTDNGRGIPVDPHPVKKIPTLELILTTLHAGGKFDRKNYITSGGLHGVGA 123 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALS+ + V+RDG+ Y F G+ L+VV R TGTS++F PD F++ Sbjct: 124 SVVNALSEELVATVKRDGKTYQQRFVRGKPKTKLKVVAE-NTRGTGTSIYFRPDPEIFET 182 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVN--GLPTLP 234 F + L+ K L ++I FKDE + + ++ G+ +YLA V G + Sbjct: 183 TEFDPVWIREHLEIKTYLNRNLKIVFKDETSGERYEFHHEGGIVEYLARLVEEQGARVVH 242 Query: 235 EKPF--IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 +PF I D ++ AL W E L +S+VN IPT +GGTH G ++ + A+R Sbjct: 243 PEPFVLIQEELRDGARLEVALQWTEAPRE-LIKSFVNGIPTTEGGTHEQGFKEAVRSAVR 301 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 + E ++LPR ++++A+DI + V+++ M +PQF GQTKE+L++ + + V G V+ Sbjct: 302 AYMETHDLLPRNLEVTADDIREGLVAVVNLFMVEPQFQGQTKEKLNNPEARSLVIGAVRL 361 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA----LPGKLADCTAQD 408 +LN + AE + I +A+ R+ + + S + LPGKLADCT+ + Sbjct: 362 DLEQFLNAHPTMAEAIVARIIQAAKARLASRAAARSVRRQSSVSHRLNLPGKLADCTSTN 421 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 ELF+VEGDSAGGSAKQARDR +QA++PL+GK+LN + S +V ++E+ +I A+ Sbjct: 422 PEECELFIVEGDSAGGSAKQARDRRFQAVLPLRGKVLNAEQASLRKVEENKELSNIVQAL 481 Query: 469 GIDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 G DLS+LRY KI +L DADSDG HI TLL F ++ R L+++GHVYVA PPLY Sbjct: 482 GCGIGDKIDLSRLRYHKIILLMDADSDGHHITTLLLTFFYRYMRPLIENGHVYVAQPPLY 541 Query: 528 RIDLGKEVYYALTEEEKEGVLEQL--KRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 RID GKE Y+AL + +++ +L++L KRK + +QRFKGLGEM P LRETTLDP RR Sbjct: 542 RIDAGKETYWALDDADRDRILQELRKKRKNVQVEIQRFKGLGEMMPDTLRETTLDPRKRR 601 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 L+++ I ++ T+ + L+ + R ++ E + E Sbjct: 602 LLRVEIPEDARLLTEQTITELMGRD-VSARFRFIMENAAQVDAE 644 >UniRef50_Q2FUD6 DNA gyrase subunit B n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FUD6_METHJ Length = 675 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 231/675 (34%), Positives = 362/675 (53%), Gaps = 50/675 (7%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDV 57 ++ TYN++ I++L GLEPVR RP MY +T +HL EV+DNS+DEALAG+ + V Sbjct: 6 LSNTYNSENIKILRGLEPVRERPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGYCTHIQV 65 Query: 58 ILHADQSLEVIDDGRGMPVD-IHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 ++H D S+ V D+GRG+P+D + + A+E +L LHAGGKF YQ SGGLHGVG+ Sbjct: 66 VIHQDGSVSVEDNGRGIPIDPMKDNDNKTALETVLTVLHAGGKFDKNTYQVSGGLHGVGV 125 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGK------------------ 158 SVVNALS + V +DG Y + F G+ DL+ + Sbjct: 126 SVVNALSVELTATVWKDGYEYRMFFSRGQPQTDLEKKEEDFEEIKDRYIKRYGSLPDNCP 185 Query: 159 ------------RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 206 + +GT + F PD F++ F L H L+ A L G+ I+ DE Sbjct: 186 ETKEEFLNRYLSKISGTMIRFKPDSKIFETIEFDYDILAHRLRELAFLNSGITISIADER 245 Query: 207 ----NNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLW-LPEGGE 261 + + Y+ G+++Y+ + + E + + V+ + + Sbjct: 246 CEDLEECSEVFSYEGGISEYVRYLNHEAQPIHESVISFSRKDEEARVEVDIAFQYAAAYS 305 Query: 262 LLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVL 320 +YVN + T +GGTH+ G R L A+ + + + + + L +D+ + ++ Sbjct: 306 EKVYTYVNSVNTKEGGTHLEGFRSALTKAINKMGKENKAIKDQNLSLKGDDVREGLTAII 365 Query: 321 SVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM 380 SV+M +PQF GQTK +L + + V +V + + ++ + + + A+ + Q R Sbjct: 366 SVRMANPQFEGQTKMKLGNSEVKGIVDSLVYASLCEYFEEHPKELAAIVDKAVLAYQARE 425 Query: 381 RAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAI 437 A K RK LPGKLADC+ + ++E+++VEGDSAGGSAKQ RDR +QAI Sbjct: 426 AARKAKELARRKSTLESSGLPGKLADCSERSAEKSEIYIVEGDSAGGSAKQGRDRRFQAI 485 Query: 438 MPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-DDLSQLRYGKICILADADSDGL 496 +PL+GKILN + + ++L + E+ + AIG D+ + RY I I+ DAD DG Sbjct: 486 LPLRGKILNVEKATVHKILKNNEIQALISAIGTGVGESFDIEKARYHHIIIMTDADVDGA 545 Query: 497 HIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKG 556 HI+TLL F ++ + L++ G++Y+A PPLYRI GK+ YA TEEE + +L+++ K Sbjct: 546 HISTLLMTFFFRYLQPLIEAGYIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMGEKG- 604 Query: 557 KPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRR 616 NVQR+KGLGEMN QL TT+DP TR L ++ I ED + + + L+ RR Sbjct: 605 -VNVQRYKGLGEMNASQLWATTMDPETRVLKRVVI--EDAAYANEIFEKLMGDD-VTARR 660 Query: 617 NWLQEKGDMA-EIEV 630 ++++ +++ Sbjct: 661 DFIKRHAKEVTNLDI 675 >UniRef50_Q9A0L0 DNA gyrase subunit B n=56 Tax=cellular organisms RepID=GYRB_STRP1 Length = 650 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 251/644 (38%), Positives = 382/644 (59%), Gaps = 22/644 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y+A I+VL GLE VR RPGMY +T +HL E++DNS+DEALAG A + V + Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 AD S+ V+DDGRG+PVDI + G PAVE + LHAGGKF Y+ SGGLHGVG SVV Sbjct: 73 EADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVV 132 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPR 178 NALS +++V V ++GQ++ F+ G V DL+V+GT T +VHF PD F ++ + Sbjct: 133 NALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTGT--TVHFTPDPEIFTETTQ 190 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 F S L ++ A L G++I+ D+ + E+ + Y+ G+ Y+ + + E Sbjct: 191 FDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFLYEGGIGSYVEFLNDKKDVIFET 250 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 P + + AV+ A+ + + S+ N I T +GGTH G R L + ++ + Sbjct: 251 PIYTDGELEGIAVEVAMQYTTS-YQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAK 309 Query: 297 YRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 IL L+ ED+ + V+SVK +PQF GQTK +L + + + + +AF Sbjct: 310 KNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQ 369 Query: 356 LWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRT 412 +L +N Q A + E I +++ R+ A + +K LPGKLADC++ D N+ Sbjct: 370 RFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQN 429 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 ELF+VEGDSAGGSAK R+RE+QAI+P++GKILN + + D++LA++E+ + A+G Sbjct: 430 ELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF 489 Query: 473 DSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 +D D+S+ RY K+ I+ DAD DG HI TLL L + R +++ G+VY+A PP+Y + + Sbjct: 490 GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKV 549 Query: 532 GKEVYYAL-----TEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 G E+ + E++ + LE+ + KP VQR+KGLGEM+ QL ETT+DP R + Sbjct: 550 GSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLM 609 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 ++T+D D D + DML+ R E RR++++E + +++ Sbjct: 610 ARVTVD--DAAEADKVFDMLMG-DRVEPRRDFIEENAVYSTLDI 650 >UniRef50_Q04WF3 DNA gyrase subunit B n=20 Tax=Bacteria RepID=Q04WF3_LEPBJ Length = 641 Score = 700 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 236/645 (36%), Positives = 366/645 (56%), Gaps = 26/645 (4%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 +Y+A I++L GLE VR+RPGMY T T + + EV+DNSVDEA+AGH + + + Sbjct: 6 TSYSASQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIRISI 65 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + +EV D+GRG+PVDIHP++ + +E+++ LHAGGKF N Y+ SGGLHGVG+SVV Sbjct: 66 LPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVV 125 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS+ +EV V + G++Y +E G V +++ G +R GT V F PD T F + F Sbjct: 126 NALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSER--GTIVRFKPDATIFTTVDF 183 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTE------QRWCYQDGLNDYLAEAVNGLPTL 233 L+ + A L G+ + +D E + + G+ ++ + Sbjct: 184 QFDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNEFQFSGGIVSFVEHINENKHPM 243 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 K D + ++ + E + N I GGTH+ G R L + + Sbjct: 244 H-KVIHFERNKDDVLAEISIQY-SETYTENIFCFTNNINNNLGGTHLEGFRAALTRTLND 301 Query: 294 FCEYRNILPRGVK--LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 351 F + L + LS ED+ + V+S+K+ PQF QTKE+L + + + + Sbjct: 302 FLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQTLSS 361 Query: 352 DAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQD 408 + L+ +N + + E I SA+ R A K RK + G LPGKLADC+ +D Sbjct: 362 EGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCSEKD 421 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 +EL+LVEGDSAGGSAKQ RDR QAI+PLKGKILN + D++L+S+E+ + A+ Sbjct: 422 PAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRILVSAL 481 Query: 469 --GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 GI D +++++RY KI I+ DAD DG HI TLL F ++ R +++ G++YVA PPL Sbjct: 482 GTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLYVAQPPL 541 Query: 527 YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 Y I GK YA +++EKE +L+ + +K +QR+KGLGEMNP QL ETT+DP+ R + Sbjct: 542 YLIKHGKNSTYAYSDKEKEELLKNVGTEK--VVIQRYKGLGEMNPEQLWETTMDPSNRVV 599 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK-GDMAEIEV 630 +++ +D D + ++L+ + + R+ +++ +A +++ Sbjct: 600 LKVKLD--DFVEAEETFNILMGDE-VQPRKQFIEINAAKVANLDL 641 >UniRef50_P43053 DNA gyrase subunit B n=78 Tax=Bacteria RepID=GYRB_MYCHP Length = 648 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 246/646 (38%), Positives = 367/646 (56%), Gaps = 23/646 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 YNAD I++L GLE VR+RPGMY + +HL E++DNSVDEA+AG A + + L Sbjct: 8 HKYNADNIQILEGLEAVRKRPGMYIGSIGFKGLHHLLWEIVDNSVDEAMAGFATEIKIKL 67 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + + +EV D+GRGMP IH AVE IL LHAGGKF NY+ SGGLHGVG SVV Sbjct: 68 YPNNVIEVEDNGRGMPTGIHSGTKKSAVETILTVLHAGGKFDGSNYKVSGGLHGVGASVV 127 Query: 120 NALSKRVEVNVRRDGQVYNIAFEN-GEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 NALS EV V+RDG+++ F N G V+ L+V+G + TGT++ F PD T + Sbjct: 128 NALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDYTIMEKEN 187 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 F + K A L G++IT ++ N + +C++ GL DY+ E G + + Sbjct: 188 FDFDTIIDHSKQIAYLNKGLKITVENVEKNIIKVFCFEGGLIDYVKELNKGKKLIVPEVI 247 Query: 239 IGNFA--------GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 G V+ A+ + E SY N I T+ GGTH G L+ Sbjct: 248 YAEGVFNDKNFTNGQDVIVEVAMQYN-EAYTNSIVSYANNIQTIDGGTHEQGFYDALVRI 306 Query: 291 MREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 + E + K++ ED+ + ++S+K DP F GQTK +L ++ + + Sbjct: 307 YNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENKDARIATNKI 366 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTSGPALPGKLADCTA 406 + D+ +LN+N + A + E + S R ++A + + LPGKLADC++ Sbjct: 367 LSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNLPGKLADCSS 426 Query: 407 QDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 466 ++ ELF+VEG+SAGGSAK RDR QAI+PL+GK++N + S VL+++E+ + Sbjct: 427 KNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLSNKEIATMIH 486 Query: 467 AIGIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 A+G + D+++L+Y KI I+ DAD DG HI TLL F ++ + L+++G VY+A PP Sbjct: 487 ALGTGINTEFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYGFVYLAQPP 546 Query: 526 LYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 LY+I GK V YA + +KE ++ +L+ K +QR+KGLGEM+P QL ETT+DP TR+ Sbjct: 547 LYKITSGKNVEYAYNDLQKEQIMAKLED-KRNVAIQRYKGLGEMDPEQLWETTMDPETRK 605 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 ++Q+ ID D D + L+ + E R +++QE A I++ Sbjct: 606 MLQVQID--DAAICDTVFATLMG-EEIEPRHDFIQENAKYANNIDI 648 >UniRef50_C7M118 DNA gyrase subunit B n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M118_ACIFD Length = 647 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 249/635 (39%), Positives = 346/635 (54%), Gaps = 19/635 (2%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILH 60 +Y A I VL GLE VR RPGMY +T P +HL EV+DN+VDE +AG +DV + Sbjct: 15 SYTAADIVVLEGLEHVRLRPGMYIGSTGPSGLHHLVWEVVDNAVDEVMAGACTEIDVTIL 74 Query: 61 ADQSLEVIDDGRGMPVDIHP-EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 AD V D+GRG+PVD HP + A E++L +L+AGGKF Y+ SGGLHGVG+SVV Sbjct: 75 ADGGCRVEDNGRGIPVDPHPSDPSKSAAEVVLTQLNAGGKFGTGGYKVSGGLHGVGVSVV 134 Query: 120 NALSKRVEVNVRRDGQVYNIAFEN-GEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 NALS R+ + V RDG Y + F G L+ +G+ G R GT V FWPD T F+ Sbjct: 135 NALSARLVLEVHRDGSTYRMEFVKGGTPTGPLERIGSSGGRR-GTVVTFWPDPTIFEDTE 193 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNT--EQRWCYQDGLNDYLAEAVNGLPTLPEK 236 FS R+ L+ A L GV + F+DE EQ + Y G+ D++ L K Sbjct: 194 FSAQRILERLQVIAFLNKGVVVRFRDERPGREHEQTFSYAGGIVDFVRHLNEPKGPLFAK 253 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 + + V+ A W E L ++ N I T +GG H G R+ L + + Sbjct: 254 VGYYAASEEDMEVEVAFSWNTTFYETLF-TFANGISTEEGGMHAEGFRKALTQVINRYAR 312 Query: 297 YRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 RN+L R L DI + ++SV++ +PQF GQTK +L + +FV V + Sbjct: 313 ARNLLKERDENLEGNDIREGMTTIVSVRLVNPQFEGQTKTKLGNVSVRSFVERVTNEHLA 372 Query: 356 LWLNQNVQAAELLAEMAI---SSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412 WL +N + A+ + + AI + +A + RK LPGKL DCT++D + + Sbjct: 373 TWLEENPREAQAIVQKAIVAQRARLAARQARELTRRKSGLESAGLPGKLTDCTSRDPSES 432 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 ELF+VEG+SAGG+ + RD + QA++P++GKILN D++L++QE+ + AIG Sbjct: 433 ELFIVEGNSAGGTTIKGRDPKTQAVLPIRGKILNVERARLDKMLSNQEIQSLIAAIGAGV 492 Query: 473 -DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 D D+ + RY K+ ILADAD DG HI TLL F + R LV+ G VY A PPLY L Sbjct: 493 GDEFDIKKARYHKVIILADADPDGSHIRTLLLTFFFRQMRPLVEAGMVYAAQPPLYSTLL 552 Query: 532 GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 G E Y E E+ LE K R KGLGEM+ +LR+TTL + R L+++TI Sbjct: 553 GTEKVYIKNEAERLRFLEAHPNHKKPF--LRLKGLGEMDFDELRDTTLHQDRRTLLKVTI 610 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 E D + +L+ E RR ++QE A Sbjct: 611 --EQAAIADEVCSVLMGDD-VEQRRRFIQENAGDA 642 >UniRef50_O51859 DNA gyrase subunit B n=208 Tax=Bacteria RepID=GYRB_VIBPA Length = 805 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 220/573 (38%), Positives = 319/573 (55%), Gaps = 15/573 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTD----TTRPNHLGQEVIDNSVDEALAGHAKRVD 56 M++ Y++ +I+VL GL+ VR+RPGMY T +H+ EV+DNS+DEALAGH K + Sbjct: 1 MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIV 60 Query: 57 VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 V +H D S+ V DDGRG+P ++HPEE V A E+I+ LHAGGKF + +Y+ SGGLHGVG+ Sbjct: 61 VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALS++V + + R G ++ + +GE L VVG K TGT + FWP F + Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDTDK--TGTQIRFWPSAETFSN 178 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEIN-NTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 F L L+ + L GV I DE + + + Y+ G+ ++ + E Sbjct: 179 TEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQDHFMYEGGIQAFVQHLNTNKTPIIE 238 Query: 236 KPFIGNFA-GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 K F + D +V+ A+ W +G + + N IP GGTH+ G R L + F Sbjct: 239 KIFHFDLEREDGISVEVAMQWN-DGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSF 297 Query: 295 CEYRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 + + S +D + V+SVK+ DP+F+ QTK++L S + + V + + Sbjct: 298 MDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEK 357 Query: 354 FILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLN 410 +L +N A+++ I +A+ R A K RK LPGKLADC +D Sbjct: 358 LSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 417 Query: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 +EL++VEGDSAGGSAKQ R+R+ QAI+PLKGKILN + D++L+SQEV + A+G Sbjct: 418 LSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 471 DPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR 528 D + +LRY I I+ DAD DG HI TLL F + L++ G+VY+A PPLY+ Sbjct: 478 GIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYK 537 Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQ 561 + GK+ Y EE L +V Sbjct: 538 VKKGKQEQYIKDEEAMNQYQVSLALDNASLHVN 570 Score = 82.7 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 6/103 (5%) Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 I G+ + E L +K + QR+KGLGEMNP QL ETT+DP TRR++Q Sbjct: 708 IKRGERTLPVSSFAEALEWL--VKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQ 765 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 +TI ED D + L+ + E RR++++E +A ++V Sbjct: 766 VTI--EDAVGADQLFTTLMG-DQVEPRRHFIEENALKVANLDV 805 >UniRef50_C7QFM2 DNA gyrase subunit B n=8 Tax=Bacteria RepID=C7QFM2_CATAD Length = 661 Score = 697 bits (1798), Expect = 0.0, Method: Composition-based stats. Identities = 254/651 (39%), Positives = 378/651 (58%), Gaps = 32/651 (4%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 YNAD+I VL GLE VR+RPGMY +T +HL E++DNSVDEA+AG+A ++V L A Sbjct: 18 YNADSISVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSVDEAMAGYADTIEVWLLA 77 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D ++V+D+GRG+PV I+ + G A+E+++ LHAGGKF + Y+ SGGLHGVG+SVVNA Sbjct: 78 DGGVKVVDNGRGIPVGINTKTGKSALEVVMTILHAGGKFGDGGYKVSGGLHGVGVSVVNA 137 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS RVEV V DG V+N +++G ++Q G +TGTS FW D F++ +S Sbjct: 138 LSSRVEVEVHTDGFVWNQVYKHGVPETEVQKGGPAA--DTGTSTIFWADVDIFETTVYSF 195 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEINNTEQ--------RWCYQDGLNDYLAEAVNGLPTL 233 L+ + A L G+ I+ DE ++ + G+ D++ +N Sbjct: 196 ETLSRRFQEMAFLNKGLTISLTDERPEFRDENGEQRSVKYHAEGGIADFVRH-INSRKGE 254 Query: 234 PEKPFIGNFAGDTE----AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 P P + +F G+ + A + AL W + E + ++ N I T GGTH G R L Sbjct: 255 PVHPNVIDFEGEDKDRTLAAEIALQWNSQYSESIY-TFANNINTHGGGTHEEGFRAALTT 313 Query: 290 AMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + ++ + +L + L+ EDI + ++SVK+ +PQF GQTK++L + + FV Sbjct: 314 LINKYARDQKLLKEKDDNLAGEDIREGLTTIVSVKLAEPQFEGQTKDKLGNPEAKTFVQR 373 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCT 405 +V + WL +N A + I ++ RM A K RK L +LPGKL+DC Sbjct: 374 LVYEKLGEWLEENPNEAREVIRKTIQASTARMAARKARELTRRKGLLESSSLPGKLSDCQ 433 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 + D +TE+F+VEGDSAGGSA+ RD QAI+P++GKILN + D+VL + EV + Sbjct: 434 SNDPTKTEIFIVEGDSAGGSARSGRDPMTQAILPIRGKILNVEKARIDKVLQNTEVQALI 493 Query: 466 VAIGID-PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALP 524 A+G D D+S+LRY KI ++ADAD DG HI TLL L + + LV+ GHVY+A P Sbjct: 494 SALGTGVHDDFDISRLRYHKIILMADADVDGAHINTLLLTLLFRFMKPLVEAGHVYLAAP 553 Query: 525 PLYRIDLGKEVY-YALTEEEKEGVLEQ---LKRKKGKPNVQRFKGLGEMNPMQLRETTLD 580 PLY++ + YA ++ E++ +LE +++ VQRFKGLGEMN +LR TT+D Sbjct: 554 PLYKVKWTNNDFNYAYSDRERDQLLEAGVGAGKRRKDETVQRFKGLGEMNAEELRITTMD 613 Query: 581 PNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE-IEV 630 R L Q+T+D D + D + +L+ + E RRN++Q +++ Sbjct: 614 REHRILRQVTLD--DAAQADDLFSVLMGED-VEARRNFIQRNAKDVRFLDI 661 >UniRef50_P0AES7 DNA gyrase subunit B n=740 Tax=root RepID=GYRB_ECO57 Length = 804 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 217/558 (38%), Positives = 320/558 (57%), Gaps = 14/558 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTD----TTRPNHLGQEVIDNSVDEALAGHAKRVD 56 M+ +Y++ +I+VL GL+ VR+RPGMY T +H+ EV+DN++DEALAGH K + Sbjct: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 Query: 57 VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 V +HAD S+ V DDGRG+P IHPEEGV A E+I+ LHAGGKF + +Y+ SGGLHGVG+ Sbjct: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALS+++E+ ++R+G+++ +E+G L V G K TGT V FWP F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTN 178 Query: 177 -PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 F L L+ + L GV I +D+ + E + Y+ G+ ++ + Sbjct: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 F + D V+ AL W +G + + N IP GGTH+ G R + + + Sbjct: 239 NIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 Query: 296 EYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 + + V + +D + V+SVK+ DP+F+ QTK++L S + + V + + Sbjct: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 Query: 355 ILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNR 411 +L +N A+++ I +A+ R A + RK LPGKLADC +D Sbjct: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN + D++L+SQEV + A+G Sbjct: 418 SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 477 Query: 472 PDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 D + +LRY I I+ DAD DG HI TLL F + +V+ GHVY+A PPLY++ Sbjct: 478 IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 Query: 530 DLGKEVYYALTEEEKEGV 547 GK+ Y +E + Sbjct: 538 KKGKQEQYIKDDEAMDQY 555 Score = 80.4 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 6/103 (5%) Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 I+ G+ + E+ L + R+ ++QR+KGLGEMNP QL ETT+DP +RR+++ Sbjct: 707 IERGERRQPVASFEQALDWLVKESRRG--LSIQRYKGLGEMNPEQLWETTMDPESRRMLR 764 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 +T+ +D D + L+ E RR +++E A I++ Sbjct: 765 VTV--KDAIAADQLFTTLMG-DAVEPRRAFIEENALKAANIDI 804 >UniRef50_Q94BZ7 DNA gyrase subunit B, mitochondrial n=83 Tax=cellular organisms RepID=GYRBM_ARATH Length = 732 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 230/645 (35%), Positives = 361/645 (55%), Gaps = 23/645 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 ++ Y+++ I+VL GL+PVR+RPGMY +T +HL E++DN++DEA AG+A +VDV+ Sbjct: 88 SKGYSSEQIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVV 147 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN--YQFSGGLHGVGI 116 LHAD S+ V+D+GRG+P D+HP ++E +L LHAGGKF + Y SGGLHGVG+ Sbjct: 148 LHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGL 207 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDL--QVVGTCGKRNTGTSVHFWPDETFF 174 SVVNALS+ +EV+V RDG + + G+ + L +V+ K GTS+ FWPD+ F Sbjct: 208 SVVNALSEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVF 267 Query: 175 DS-PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR----WCYQDGLNDYLAEAVNG 229 + F + + ++ A L P V I+ K E ++ E+ + + GL +Y++ Sbjct: 268 TTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTD 327 Query: 230 LPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 + + + VD AL W + Y N I T+ GGTH+ G++ L Sbjct: 328 KNPIHD-VLGFRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 386 Query: 290 AMREFCEY-RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + + + + + + LS E + + ++SVK+ +P+F GQTK RL + + V Sbjct: 387 TLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQ 446 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCT 405 V++ +L + E + ++++ + + A + V K + +LPGKLADC+ Sbjct: 447 SVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCS 506 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 + D +E+F+VEGDSAGGSAKQ RDR +QAI+PL+GKILN + ++E+ ++ Sbjct: 507 STDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLI 566 Query: 466 VAIGIDPDSDDLSQ--LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 + +G+ +D + LRY KI IL DAD DG HI TLL F ++ RAL G +YV + Sbjct: 567 LGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGV 626 Query: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583 PPL++++ GK Y + + + + N+QRFKGLGEM P QL ETT++P T Sbjct: 627 PPLFKVERGKNAQYCYDDADLKKITSNFP-ANASYNIQRFKGLGEMMPEQLWETTMNPET 685 Query: 584 RRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEI 628 R L QL +D D + L+ R + R+ ++ + Sbjct: 686 RILKQLVVD--DIAEANMTFSSLMG-ARVDVRKELIKNAATRINL 727 >UniRef50_A5TY73 DNA gyrase subunit B n=542 Tax=Bacteria RepID=GYRB_MYCTA Length = 675 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 247/674 (36%), Positives = 371/674 (55%), Gaps = 54/674 (8%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y A +I +L GLE VR+RPGMY +T +HL EV+DN+VDEA+AG+A V+V+L Sbjct: 10 DEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGYATTVNVVL 69 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D +EV DDGRG+PV H G+P V++++ +LHAGGKF + Y SGGLHGVG+SVV Sbjct: 70 LEDGGVEVADDGRGIPVATHA-SGIPTVDVVMTQLHAGGKFDSDAYAISGGLHGVGVSVV 128 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS R+EV ++RDG ++ +E E + Q + TG++V FW D F++ + Sbjct: 129 NALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQ---GAPTKKTGSTVRFWADPAVFETTEY 185 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEI--------------------------------N 207 + L+ A L G+ I DE Sbjct: 186 DFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHK 245 Query: 208 NTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESY 267 + + Y GL D++ + + G V+ A+ W E + ++ Sbjct: 246 VKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVH-TF 304 Query: 268 VNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQD 326 N I T +GGTH G R L + ++ + R +L + L+ +DI + A V+SVK+ + Sbjct: 305 ANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSE 364 Query: 327 PQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK- 385 PQF GQTK +L + + +FV V + W N A+++ A+SSAQ R+ A K Sbjct: 365 PQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKAR 424 Query: 386 --VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGK 443 V RK T LPGKLADC + D ++EL++VEGDSAGGSAK RD +QAI+PL+GK Sbjct: 425 ELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGK 484 Query: 444 ILNTWEVSSDEVLASQEVHDISVAIGID-PDSDDLSQLRYGKICILADADSDGLHIATLL 502 I+N + D VL + EV I A+G D D+ +LRY KI ++ADAD DG HI+TLL Sbjct: 485 IINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADADVDGQHISTLL 544 Query: 503 CALFVKHFRALVKHGHVYVALPPLYRIDLGK-EVYYALTEEEKEGVLE----QLKRKKGK 557 L + R L+++GHV++A PPLY++ + + +A ++ E++G+LE K+ + Sbjct: 545 LTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKE 604 Query: 558 PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRN 617 +QR+KGLGEM+ +L ETT+DP+ R L Q+T+DD D + +L+ + + RR+ Sbjct: 605 DGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAA--ADELFSILMGED-VDARRS 661 Query: 618 WLQEKGDMAE-IEV 630 ++ ++V Sbjct: 662 FITRNAKDVRFLDV 675 >UniRef50_Q2NJM1 DNA gyrase subunit B n=5 Tax=Mollicutes RepID=Q2NJM1_AYWBP Length = 671 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 244/676 (36%), Positives = 372/676 (55%), Gaps = 54/676 (7%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + YNAD+I++L GLE VR+RPGMY +T +HL E++DNS+DEALAGHA + + + Sbjct: 2 KNYNADSIQILEGLEAVRKRPGMYIGSTAQKGLHHLVWEIVDNSIDEALAGHANNITLEI 61 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + + V D+GRG+PVDIHP+ G PAVE IL LHAGGKF + +Y+ SGGLHGVG SVV Sbjct: 62 LPGEIISVSDNGRGIPVDIHPKTGKPAVETILTTLHAGGKFDSSSYKVSGGLHGVGASVV 121 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPR 178 NALS V +R + Q+Y +E G V L+V+G KR GT++ F D F ++ Sbjct: 122 NALSNWFTVEIRLNKQIYFQKYEKGIAVSPLEVIGGTNKR--GTTIQFLSDPEIFQETTI 179 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ--RWCYQDGLNDYLAEAVNGLPTLP-E 235 ++ L ++ + L G+++ D+ E +C++ GL DY+ +P Sbjct: 180 YNFDTLKERMQQLSFLNKGLKLKIADKRYEKETVFNFCHEKGLQDYIDFINTSHKQIPFH 239 Query: 236 KPFIGNFAGDTEAVDWALLWLPE-------------------------GGELLTESYVNL 270 + F A + + + S+VN Sbjct: 240 EIFYLEKEAQKLAFEIVFEYTTQLRPTKKDEQGNEIEEKEDKDTIPRYTQSQKIFSFVNN 299 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFA 330 IPT +GGTH G + L + ++ + N+L + L +EDI + ++S+K QDPQF Sbjct: 300 IPTHEGGTHEEGFKLALTRVISKYAKEFNLLKKDEHLLSEDILEGITAIISLKHQDPQFE 359 Query: 331 GQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRR--MRAAKKVVR 388 GQTK +L++ + S + + +L ++ Q + + + + SA R + A++VVR Sbjct: 360 GQTKAKLANTEVRQITSQLFGEFLEKYLLEHPQDSRKIIDKCLLSANARLAAKRAREVVR 419 Query: 389 KKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW 448 K KLADC ++D + +EL++VEGDSAGGSAKQ RD +QAI+PL+GK+LN Sbjct: 420 NKPLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGKVLNVE 479 Query: 449 EVSSDEVLASQEVHDISVAIGIDPD-----SDDLSQLRYGKICILADADSDGLHIATLLC 503 + ++L ++E+ + AIG + ++ ++RY KI I+ DAD DG HI TLL Sbjct: 480 KSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNVDKIRYHKIIIMTDADVDGAHIRTLLL 539 Query: 504 ALFVKHFRALVKHGHVYVALPPLYRIDLGKEV-YYALTEEEKEGVLEQLKRKKGKPNVQR 562 F +HFR L++ G++Y A PPLY+ GK Y E+ K+ + K G QR Sbjct: 540 TFFFRHFRELIEKGYIYFARPPLYKYQKGKGTPKYFYDEKTKQTFANKNSLKDGF---QR 596 Query: 563 FKGLGEMNPMQLRETTLDPNTRRLVQLTI--------DDEDDQRTDAMMDMLLAKKRSED 614 +KGLGEMNP QL ETT+DP R L++ ++ D+E TD +ML+ ++ Sbjct: 597 YKGLGEMNPNQLWETTMDPENRTLLKASLKDALNALSDEEALMETDQTFNMLMG-EKVLP 655 Query: 615 RRNWLQEKGDMAEIEV 630 R+N++ EK A+++V Sbjct: 656 RKNFILEKALEADLDV 671 >UniRef50_P34031 DNA gyrase subunit B n=54 Tax=Bacteria RepID=GYRB_SPICI Length = 640 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 227/646 (35%), Positives = 378/646 (58%), Gaps = 22/646 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDV 57 M YN+++I++L GLE +R+RPGMY T +HL E++DNS+DE LA A ++ + Sbjct: 1 MGDNYNSESIQILEGLEAIRKRPGMYIGATNARGLHHLVWEIVDNSIDEVLANFANKIKI 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 IL+ D+S+ VID+GRG+P++IHP+ V +E + LHAGGKF + Y+ SGGLHGVG S Sbjct: 61 ILNKDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGAS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKV-QDLQVVGTCGKRNTGTSVHFWPDETFF-D 175 VVNALSK ++V VR++ + Y + F NG ++ ++ VG+ + TGT+V F PDE F + Sbjct: 121 VVNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTSE--TGTTVTFLPDEKIFKE 178 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR---WCYQDGLNDYLAEAVNGLPT 232 + FS S + + +K L G+EI+ D E++ + + +G+ DY+ E + T Sbjct: 179 TTIFSFSTIQNRIKQLVFLNKGLEISLVDLREEDEEKTVLYQFNNGIKDYVLELNKTIGT 238 Query: 233 LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 F D V++ L + E + S+ N I T +GGTH G R ++ + Sbjct: 239 PLNDVFYVEGIEDNIVVEFGLQYNDNYSENIF-SFCNNINTHEGGTHEEGARLAIVREIN 297 Query: 293 EFCEY---RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 + + +N K + +DI + ++S++ +PQ+ GQT ++L + + VS + Sbjct: 298 NYFKNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKIVSNI 357 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQR---RMRAAKKVVRKKLTSGPALPGKLADCTA 406 V +L +N + A+ + E S + RA + RK + +LPGKL+DC Sbjct: 358 VGKGLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLSDCET 417 Query: 407 QDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 466 +D EL++VEGDSAGGSAK R+R++QAI+PL+GKILN + ++ + E++ I Sbjct: 418 KDAKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSIIT 477 Query: 467 AIGIDP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 A+G D+ + +LRY K+ I+ DAD DG HI LL F ++ + L+++G++Y+A PP Sbjct: 478 ALGAGIKDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPP 537 Query: 526 LYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 LY+++ ++ Y ++ E E E+L ++ +QR+KGLGEMNP QL ETT+DP R Sbjct: 538 LYKVENSNQIRYVYSDNELELYKEELLKQNKNYTIQRYKGLGEMNPEQLWETTMDPERRL 597 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE-IEV 630 L+++++++ + + + L+ + E R+ +++E + ++V Sbjct: 598 LLKVSVNNA--FEANLICNELMG-ENVEPRKKFIRENAKYVKNLDV 640 >UniRef50_D0J983 DNA gyrase subunit B n=22 Tax=cellular organisms RepID=D0J983_BLASP Length = 642 Score = 689 bits (1779), Expect = 0.0, Method: Composition-based stats. Identities = 236/644 (36%), Positives = 379/644 (58%), Gaps = 23/644 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y AD+I+ L G+E +R RP MY +HL EVIDNSVDE+LAG+ ++ V + Sbjct: 6 TDYTADSIQSLEGIEHIRLRPSMYIGDVGIRGLHHLVCEVIDNSVDESLAGYCNKIWVTI 65 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H + + V+D+GRG+P+DIH +EG A+E+++ ++ AGGKF +Y+ SGGLHGVGIS V Sbjct: 66 HKNGFITVLDNGRGIPIDIHKKEGKSALEVVMTKIGAGGKFDKNSYKVSGGLHGVGISCV 125 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALSKR+ V V R+G++Y + G + +Q +G + GT +H+ D + F+S + Sbjct: 126 NALSKRLIVTVYRNGKIYQQEYLRGTPIDRVQCLGETHLQ--GTKIHYLADNSIFNSITY 183 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 L+ LK A L G+ + KDE NN E+ + ++GL +YL+ +L Sbjct: 184 HYEILSTRLKELAFLNKGLHLFLKDERNNIEEDFFSKNGLKEYLSILDKNQESLIRNIIF 243 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF----C 295 + V+ A+ + E + SYVN I T +GGTH++G R+ L +++ Sbjct: 244 IEGEKEDTIVEVAMQYNTSFKEKIY-SYVNNINTSEGGTHISGFRRALTRTFKKYTDGLL 302 Query: 296 EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 ++ V L+ +D + ++S+++ +PQF GQTK +LS+ + V +V + Sbjct: 303 SNKDNKKDKVDLTGDDFREGLTAIISIRVMEPQFEGQTKTKLSNHEVGGIVDKIVGEMLN 362 Query: 356 LWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRT 412 +L +N + + I SA+ R A K + +K LPGKLADC+ + Sbjct: 363 SYLEENPSERRKIIDKVILSAKARQAAKKARELIQKKSPIYNSILPGKLADCSFNNPENC 422 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 E++LVEGDSAGG+AKQ RDR +QAI+PL+GKILN + ++ ++E+ +I ++G+ Sbjct: 423 EIYLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMQYKIFENEEIRNIFTSLGVSI 482 Query: 473 DSD------DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 ++ ++ +LRY KI I+ DAD DG HI+TL+ LF ++ + L++ GH+Y+A PPL Sbjct: 483 GTEEDPKNLNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKPLIEKGHIYIATPPL 542 Query: 527 YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 Y I G YA ++EE+E +L++L R+K K N+QR+KGLGEMN QL ETT++P R L Sbjct: 543 YLIRKGNHSQYAWSDEEREKILQRLGRRK-KINIQRYKGLGEMNAEQLWETTMNPKKRTL 601 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 ++ I++ D + +L+ + RR+++++ A+I+V Sbjct: 602 RKVHIEN--LSEADKIFSILMG-EEVPPRRSFIEKNAIHAKIDV 642 >UniRef50_B6GDL9 DNA gyrase subunit B n=2 Tax=Collinsella RepID=B6GDL9_9ACTN Length = 674 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 246/671 (36%), Positives = 361/671 (53%), Gaps = 53/671 (7%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y + I+VL GLE VR RPGMY +T +HL E++DNSVDEA+AG +++V + Sbjct: 5 NEYGGNEIKVLEGLEAVRVRPGMYIGSTSSTGLHHLVWEIVDNSVDEAMAGFCTKIEVTV 64 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S+ V+D+GRG+PVD HP + +P +E+++ LHAGGKF N Y+ SGGLHGVG+SVV Sbjct: 65 HPDNSITVVDNGRGIPVDEHPVKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVGVSVV 124 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALSK++ V VRRDG +Y + F G+ Q ++ +GT T + FWPDE F++ + Sbjct: 125 NALSKKMNVQVRRDGHIYEMEFSRGKTTQKMREIGTSETTGT--TTTFWPDEEIFETTVY 182 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTE--QRWCYQDGLNDYLAEAVNGLPTLPEKP 237 L L+ A L ++I KDE + +CY G+ D++ G Sbjct: 183 DYDILRTRLQQTAFLNKNLKIVLKDERTADPLVEEFCYAGGIVDFVKFLNEGKTVPEGLK 242 Query: 238 FIGNFAGDTE---------AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288 +G++E V+ A+ W E + S+ N I T++GG H+ G R L Sbjct: 243 HPIYLSGESEPGAPVEKIGEVEVAIQWNTSYSENV-VSFANDIRTIEGGMHMEGFRAALT 301 Query: 289 DAMREFCEYRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 + ++ NIL L+ +DI + V+SVK+ DPQF GQTK +L S Sbjct: 302 SVINDYARKNNILKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGSSFMRTLTR 361 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTSGPALPGKLADC 404 VV + +L ++ + A + + A +++ R +A + RK L +LPGKLADC Sbjct: 362 KVVSEGLADFLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETASLPGKLADC 421 Query: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 + +D TELF+VEGDSAGGSAK R R+ QAI+PL+GKILN V +S+ + + Sbjct: 422 SVRDAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSSETIQSL 481 Query: 465 SVAIGIDP-------DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 AIG D+++ RY KI I+ DAD DG HI LL F K+ R L+ G Sbjct: 482 ITAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMRPLIDAG 541 Query: 518 HVYVALPPLYRIDLGKEVYYAL----------------------TEEEKEGVLEQLKRKK 555 +VYVA PP++ I + +++Y E + E ++ +K+ Sbjct: 542 YVYVACPPIFGIKVRNKIHYVYPNGRQAEDEILRDSIKALGLNPDEADDEQANGKVTKKR 601 Query: 556 GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDR 615 VQR+KGLGEM+P QL TT+DP TR L ++TI ED D + L+ + R Sbjct: 602 KGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTI--EDAVVADRAVRELMGSE-VGYR 658 Query: 616 RNWLQEKGDMA 626 R ++++ A Sbjct: 659 REYIEKHAHDA 669 >UniRef50_B7G298 Predicted protein n=3 Tax=cellular organisms RepID=B7G298_PHATR Length = 727 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 252/665 (37%), Positives = 350/665 (52%), Gaps = 41/665 (6%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVI 58 Q+Y A I VL GL+PVR+RPGMY +T P +HL EV+DN VDEALAGHA V Sbjct: 63 AQSYGAGQITVLKGLDPVRKRPGMYIGSTGPDGLHHLVWEVVDNCVDEALAGHATFVTTT 122 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN----KNYQFSGGLHGV 114 +HAD SL V DDGRG+P D+H E G A+E +L LHAGGKF N Y+ SGGLHGV Sbjct: 123 IHADGSLTVTDDGRGIPTDLHSETGKSALETVLTELHAGGKFDNQGSNSGYKVSGGLHGV 182 Query: 115 GISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCG----KRNTGTSVHFWPD 170 GISVVNALS+ V V V R ++Y + FE G LQ + KR +GTSV F PD Sbjct: 183 GISVVNALSEFVHVKVDRTPELYQMRFERGVPTGPLQNLDKLKTLLSKRKSGTSVTFLPD 242 Query: 171 ETFF------DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN----NTEQRWCYQDGLN 220 F F SRL + A L G+ +T KDE Q + + GL Sbjct: 243 LKVFKGDNGKPDITFDSSRLKGRMDEIAYLNAGLVLTLKDERKSPGRGRLQVFYHAGGLA 302 Query: 221 DYLAEAVNGLPTL------PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTM 274 +Y L K D+ + D AL W + S+ N I T Sbjct: 303 EYAELLCRTKTPLFQGTTSSRKKKPARKQKDSASDDDALRWSSDMYAESILSFCNNIRTR 362 Query: 275 QGGTHVNGLRQGLLDAMREFCEYRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQFAGQT 333 GG+HV GL+ L + + + N G L E I + ++SV + +P+F GQT Sbjct: 363 DGGSHVEGLKACLTRTVNQAAKRSNKAKEGAANLPGEFIREGLTAIVSVSVSEPEFEGQT 422 Query: 334 KERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA---AKKVVRKK 390 K RL + + V ++ + + + + A S+ A V RK Sbjct: 423 KGRLGNPEVRPAVDSLLSAELTKLFDFRPEILDAIYNKASSAQAAAAAAKAARDMVRRKT 482 Query: 391 LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV 450 L + LPGKLADC ++D +E+F+VEGDSA GSAKQ RDR QAI+PL+GKILN Sbjct: 483 LLTSTILPGKLADCASRDPEESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIERA 542 Query: 451 SSDEVLASQEVHDISVAIGIDPD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVK 508 +++ + + E+ + A+G+ D LRYG+I I+ DAD DG HI LL F + Sbjct: 543 ATERIYQNTELQGLISALGLGVKGSEFDPKSLRYGRIVIMTDADVDGAHIRVLLLTFFYR 602 Query: 509 HFRALVKHGHVYVALPPLYRIDLG----KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFK 564 + R LV++GHVY+A PPLY++ +G ++ YA + E+ V+ Q GK ++QRFK Sbjct: 603 YQRELVENGHVYIAQPPLYKVSVGSGRSRKEGYAFNDTERNTVMMQ-ALAAGKVSLQRFK 661 Query: 565 GLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD 624 GLGEM P QL TT+DP R ++Q+T++ D D + +L+ R+ ++ + + Sbjct: 662 GLGEMMPEQLWSTTMDPERRTMLQVTVN--DASMADQTLSILMG-DTVAPRKEFISTQAE 718 Query: 625 MAEIE 629 ++ Sbjct: 719 TLRVD 723 >UniRef50_P50074 DNA gyrase subunit B, novobiocin-resistant n=117 Tax=cellular organisms RepID=GYRBR_STRSH Length = 677 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 251/661 (37%), Positives = 368/661 (55%), Gaps = 38/661 (5%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 T +Y+A+AI VL GL+ VR+RPGMY +T +HL QE++DNSVDEALAG A R+DV Sbjct: 23 TASYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELVDNSVDEALAGVADRIDVT 82 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 + AD + V+D+GRG+PV +HP E PAVE++L LHAGGKF Y SGGLHGVG+SV Sbjct: 83 VLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYGVSGGLHGVGLSV 142 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS R+ + DG + + +G L + TGTS+ FW D F++ Sbjct: 143 VNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLARHEATSR--TGTSLTFWADGDIFETTE 200 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR----------------WCYQDGLNDY 222 +S L + A L G+ +T DE ++ + Y G+ D+ Sbjct: 201 YSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEADSDPTAKTVSYRYDGGITDF 260 Query: 223 LAEAVNGLPTLPEKPFIGNFAGDTEAV---DWALLWLPEGGELLTESYVNLIPTMQGGTH 279 + I A DTE + + AL W + + + SY N I T +GGTH Sbjct: 261 VVHLNARKGEPAHPSVITIAAEDTERLLSAEIALQWNGQYTDSVY-SYANAIHTHEGGTH 319 Query: 280 VNGLRQGLLDAMREFCEYRNIL-PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLS 338 G R L + + + +L + LS EDI + ++SV + +PQF GQTK +L Sbjct: 320 EEGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQTKTKLG 379 Query: 339 SRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGP 395 + + + +V + W ++N A + A+ +A R+ A K RK L Sbjct: 380 NTEVRTLLQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETA 439 Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEV 455 ALPGKL+DC + D +E+F+VEGDSAGGSAK R+ +YQAI+P++GKILN + D+V Sbjct: 440 ALPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKV 499 Query: 456 LASQEVHDISVAIGID-PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV 514 L +QE + A G + D+++LRY KI ++ADAD DG HI+TLL + R LV Sbjct: 500 LQNQENQALISAFGTGVHEDFDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLV 559 Query: 515 KHGHVYVALPPLYRIDLGKE-VYYALTEEEKEGVLE---QLKRKKGKPNVQRFKGLGEMN 570 + GHV+++ PPLY+I +E V YA ++ E+ +LE + R+ ++QRFKGLGEMN Sbjct: 560 EEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDGRRIRDDSIQRFKGLGEMN 619 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE-IE 629 +LR TT+DP+ R L Q+T+D D D + +L+ + E RR+++Q ++ Sbjct: 620 AEELRVTTMDPDHRVLGQVTLD--DAAFADDLFSVLMGED-VEARRHFIQRNAQDVRFLD 676 Query: 630 V 630 + Sbjct: 677 I 677 >UniRef50_Q2S2H3 Type II DNA topoisomerase, B subunit n=3 Tax=Bacteria RepID=Q2S2H3_SALRD Length = 643 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 264/645 (40%), Positives = 379/645 (58%), Gaps = 17/645 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDV 57 M TY + I+VL GLEPVR+RPGMY T +H+ EV+DN+VDEA G+A R++V Sbjct: 1 MPTTYTGEDIDVLEGLEPVRKRPGMYIGGTGRPGLHHILWEVVDNAVDEATNGYASRIEV 60 Query: 58 ILHADQ-SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 +LH D S+ V D+GRG+PVD HPE+GVP V+LIL LH+GGKF NY SGGLHGVG+ Sbjct: 61 VLHEDGESISVSDNGRGIPVDDHPEKGVPTVQLILTTLHSGGKFDGSNYITSGGLHGVGV 120 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALS+ + V+RDGQ Y F G V L R TGT ++F PD F+S Sbjct: 121 SVVNALSEELVATVKRDGQEYQQRFRQGTPVTGLDTTKESA-RGTGTDIYFRPDPDIFES 179 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 F S + L K L ++I F+DE +N ++ G+ +YL V L P Sbjct: 180 VEFDPSWIREHLDVKTYLNRDLKIIFRDETSNERYELHHEGGIQEYLDYLVEDLQVSPIH 239 Query: 237 PFIGNFA----GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 + ++ AL W E ++VN IPT GGTH GL+ G+ +R Sbjct: 240 DDVFMMEDDDLDGDGRLEIALQWTDAPKE-QLHTFVNGIPTEDGGTHEQGLKSGIRAVIR 298 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 F + +++P +++ +D + ++++ DPQF GQTK++L++ + VSG ++ Sbjct: 299 SFMDTHDLVPHRLEIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPSVRSQVSGALRT 358 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGP----ALPGKLADCTAQD 408 +LN + E +A + +A+ R SG LPGKLADC++ Sbjct: 359 ELEQYLNDHSSTGEAIASRVVQAAKARRARRSASGGSSGRSGSKSRLQLPGKLADCSSST 418 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 + ELF+VEGDSAGGSAKQARDRE QA++PL+GK+LN + + D V ++E+ +I A+ Sbjct: 419 PSECELFIVEGDSAGGSAKQARDRETQAVLPLRGKVLNAEQATLDRVQNNKELSNIVQAL 478 Query: 469 GIDP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 G D+ DLS LRY K+ +L DADSDG HIATLL F ++ R L++ G V++A PPLY Sbjct: 479 GCGIGDALDLSDLRYRKVILLMDADSDGHHIATLLLTFFYRYMRPLIEGGFVHIAQPPLY 538 Query: 528 RIDLGKEVYYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPMQLRETTLDPNTRR 585 RI+ GKE ++AL E +KE +L++++ PN +QRFKGLGEM P L ETTL P RR Sbjct: 539 RIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNETTLSPEGRR 598 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 L++++I D + T+ + L+ + S + +Q + E++V Sbjct: 599 LLEVSIPDTERMVTEQTITELMGRDSSARFKFIMQHAAEADELDV 643 >UniRef50_A9KS52 DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Bacteria RepID=A9KS52_CLOPH Length = 642 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 228/648 (35%), Positives = 348/648 (53%), Gaps = 27/648 (4%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + YN I VL GLE VR+RPGMY +T +HL E++DN +DE LAG ++++ L Sbjct: 2 EQYNGSQIVVLEGLEAVRKRPGMYIGSTGTRGLHHLIWEILDNGIDEHLAGFCNQLEITL 61 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D + + D GRG+PVDIHP + +P ++ LHAGGKF Y+ SGGLHGVG SVV Sbjct: 62 LKDGGISIADHGRGVPVDIHPTKKIPTARVVYTILHAGGKFGGSVYKVSGGLHGVGASVV 121 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEK------VQDLQVVGTCGKRNTGTSVHFWPDETF 173 NALS R+ V +RRDG++Y +E+G L VVG C K +TGT V F+PD T Sbjct: 122 NALSTRMIVEIRRDGKIYRDEYEHGGHPCVELENGMLPVVGKCNKSDTGTKVTFYPDPTI 181 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 F++ F +T LK A L + I F D+ ++ +C + G+ +++ + Sbjct: 182 FETVEFKAETITKKLKEVAFLNKNLSIVFYDQNTGFKKTYCEEFGIKSFVSYINREASVI 241 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 E+P V+ AL + E +Y N I + GGT V G + L M + Sbjct: 242 HEEPIYIEGKSGDIEVEVALQYTNSFSE-QINAYCNRINVVDGGTLVTGFKTALTRVMNQ 300 Query: 294 FCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 + +L + +DI + ++S+K DPQF GQTK +L + + V V Sbjct: 301 YARELGVLKEKDENFDGKDIRNGLVTIISIKHPDPQFEGQTKTKLGNTDAKSAVEDVFSG 360 Query: 353 AFILWLNQNVQAAELLAEMAISS--AQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLN 410 + ++NV+ + + E ++ S A++ A+ V K+L KLA C+++ Sbjct: 361 EVTRFFDKNVEILKAILENSMRSYTARKASDKARSAVLKQLNDIDTK-SKLASCSSKKPE 419 Query: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 E+++VEGDSAGG+ K AR+R QA++PL+GKI+N + + +++L + E+ + + G Sbjct: 420 ECEVYIVEGDSAGGTVKTARNRRTQAVLPLRGKIINVEKATLEKILVNNEIKSMIASFGC 479 Query: 471 DPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 D D+S+LRY KI IL DAD DG HI+TLL F + L+ G +Y LPPLYR+ Sbjct: 480 GIGEDFDISKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPELIMEGKIYRGLPPLYRV 539 Query: 530 -------DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582 K+ Y + E + + K K +QR+KGLGEM+ QL ETTL+P Sbjct: 540 EYETSEGKKKKKFEYIYNDFELDKFRKNTKHKIIH--IQRYKGLGEMDAEQLWETTLNPE 597 Query: 583 TRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 TR L Q++I D D D +L++ RR ++ ++ A++++ Sbjct: 598 TRVLAQVSITDTVD--ADETTTLLMS-NNVPPRRAFIMDEAKYAKLDI 642 >UniRef50_A3EQC0 DNA gyrase subunit B n=7 Tax=Bacteria RepID=A3EQC0_9BACT Length = 818 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 211/558 (37%), Positives = 312/558 (55%), Gaps = 12/558 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y A+ I VL GLE VR RPGMY +T +HL E++DNSVDEALAGH + + + Sbjct: 9 EEYTAEHIRVLEGLEAVRVRPGMYIGSTGIDGLHHLVYELVDNSVDEALAGHCSEIHITI 68 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D+S+ V D+GRG+P +H E+ A E++L LHAGGKF+N Y+ SGGLHGVG+SVV Sbjct: 69 HPDRSVTVADNGRGIPTGMHAEQKRSAAEVVLTVLHAGGKFNNNLYKVSGGLHGVGVSVV 128 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS+ + + + ++G ++ + G L V G +R GT + FWPD T ++ +F Sbjct: 129 NALSETLFLEIHQNGLIHRQTYHKGTPDAPLAVFGETTQR--GTIIRFWPDMTIMETDQF 186 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 S L H + A L P + I KDE E+ + ++ G+ +++ TL + F Sbjct: 187 SFDTLAHRFRELAFLNPVLTIHLKDEETLREETFHFEGGVQSFVSFLNENKKTLHDVLFF 246 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 D + A + + N I T +GGTHV G R + + F + Sbjct: 247 RKTLEDGSQFEVAFQYQESTENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQ 306 Query: 300 ILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLN 359 + +G ++ ED+ + ++SV++ PQF GQTK +L S A + + +A Sbjct: 307 L-NKGEEVRGEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFE 365 Query: 360 QNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFL 416 ++ A+ +AE A+ +AQ R A K RK + G LPGKLADC D ++EL++ Sbjct: 366 EDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYI 425 Query: 417 VEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVS-SDEVLASQEVHDISVAIGIDPDSD 475 VEGDSAGGSAKQ RDR +QAI+PLKGKILN + ++ + + EV + A+G + Sbjct: 426 VEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEE 485 Query: 476 DLS--QLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 + S +LRY KI I+ DAD DG HI TLL F +H L+ VY+A PPLY++ G+ Sbjct: 486 EFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIAQPPLYKVSYGR 545 Query: 534 EVYYALTEEEKEGVLEQL 551 + Y L +E + + +L Sbjct: 546 QERYLLNDEALQAYILEL 563 Score = 78.8 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 13/119 (10%) Query: 513 LVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPM 572 L G V L R G+E+ + + E LE R+K ++QR+KGLGEMNP Sbjct: 712 LFPGGFV------LRRGAEGEEIRF-RSPRELLSFLESPVRQK--LSIQRYKGLGEMNPE 762 Query: 573 QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 QL ETT+DP+ R L++++I D D + L+ ++ RR ++++ D+A +++ Sbjct: 763 QLWETTMDPSRRTLLKVSI--PDYVEADRVFTTLMG-EQVAPRREFIEKHALDVANLDI 818 >UniRef50_B6IVV7 DNA gyrase subunit B n=192 Tax=cellular organisms RepID=B6IVV7_RHOCS Length = 876 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 227/574 (39%), Positives = 314/574 (54%), Gaps = 28/574 (4%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDV 57 + Y A +I+VL GL+ VR+RPGMY T +H+ EV+DN++DEALAG+A RV+V Sbjct: 15 AEEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYADRVEV 74 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 L+AD S+ V D+GRG+PVDIHP EGV A E+I+ +LHAGGKF +Y+ SGGLHGVG+S Sbjct: 75 TLNADGSVTVRDNGRGIPVDIHPGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 134 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGT---------CGKRNTGTSVHFW 168 VVNALS+ + + V R G+V+ + F +G+ V L VG G+ TGT V F Sbjct: 135 VVNALSETLFLRVWRKGRVWEMTFRHGDAVAPLADVGAAPVVASGPRAGQPLTGTEVTFL 194 Query: 169 PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI--NNTEQRWCYQDGLNDYLAEA 226 P + F F L H + A L GV + F D Y+ GL ++ Sbjct: 195 PSKQTFTKTEFDFQTLEHRFRELAFLNSGVLLVFTDARGVEPKVTELFYEGGLEAFVQYL 254 Query: 227 VNGLPTLPEKPFI-----GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVN 281 L + + G T V+ AL W E + N IP GGTH+ Sbjct: 255 DRSKAALHKPSIAMRGERVSDLGTTVTVEVALQWNDSYHESCL-CFTNNIPQRDGGTHLA 313 Query: 282 GLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR 340 G R L + ++ E IL + V LS +D+ + VLSVK+ DP+F+ QTK++L S Sbjct: 314 GFRAALTRTINKYAEESGILKKEKVALSGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSS 373 Query: 341 QCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPAL 397 + V VV DA W ++ A + + +A R A + RK +L Sbjct: 374 EVRPVVETVVADALATWFEEHPADARRIVGKVVEAAAAREAARRARELTRRKGALDMASL 433 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLA 457 PGKLADC +D +ELF+VEGDSAGGSAKQ R R++QAI+PL+GKILN D++L+ Sbjct: 434 PGKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVERARFDKMLS 493 Query: 458 SQEVHDISVAIGIDPD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK 515 S E+ + A+G D + RY KI I+ DAD DG HI TLL F + AL++ Sbjct: 494 SAEIGTLIAALGTGIGREEFDPDKARYHKIIIMTDADVDGAHIRTLLLTFFYRQMPALIE 553 Query: 516 HGHVYVALPPLYRIDLGK-EVYYALTEEEKEGVL 548 G++Y+A PPLYR+ G + Y + + E L Sbjct: 554 RGYLYIAQPPLYRVKRGTAKERYLKDDRQLEDYL 587 Score = 80.8 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 4/81 (4%) Query: 551 LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKK 610 +++ + +QR+KGLGEMNP QL ETTLDP R L+Q+ + D + + L+ Sbjct: 799 IEQGRAGLAIQRYKGLGEMNPDQLWETTLDPANRTLLQVKVSHAD--EAEEVFSTLMG-D 855 Query: 611 RSEDRRNWLQEKG-DMAEIEV 630 E RR+++QE +A ++V Sbjct: 856 LVEPRRDFIQENALKVANLDV 876 >UniRef50_B8GXQ0 DNA gyrase subunit B n=17 Tax=cellular organisms RepID=GYRB_CAUCN Length = 805 Score = 677 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 227/568 (39%), Positives = 320/568 (56%), Gaps = 22/568 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDV 57 Y AD+I+VL GL+ VR+RPGMY T +H+ EV+DN++DEALAGHA +V V Sbjct: 7 AAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATKVQV 66 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 IL+AD S+ V DDGRG+PVD+H EGV A E+I+ +LHAGGKF +Y+ SGGLHGVG+S Sbjct: 67 ILNADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 126 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN---------TGTSVHFW 168 VVNALS +E+ + R+G+V+ + FE G+ V L+V G R TGT V F+ Sbjct: 127 VVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTGTEVTFF 186 Query: 169 PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI--NNTEQRWCYQDGLNDYLAEA 226 P + F F L H L+ A L GV I FKD E++ Y+ G+ ++ Sbjct: 187 PSKDTFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKLFYEGGIEAFVRHL 246 Query: 227 VNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 L + P D +D AL W E + N IP GGTH++ R Sbjct: 247 DKAKTPLLKAPIAVKGVKDKVEIDLALWWNDSYHE-QMLCFTNNIPQRDGGTHLSAFRAA 305 Query: 287 LLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 345 L + + E IL + V L ED + VLSVK+ DP+F+ QTK++L S + Sbjct: 306 LTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPA 365 Query: 346 VSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLA 402 V G+V + W ++ A+ + +A R A K RK +LPGKLA Sbjct: 366 VEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTRRKSALDITSLPGKLA 425 Query: 403 DCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVH 462 DC+ +D ++E+F+VEGDSAGGSAKQAR+R+ QA++PL+GKILN D++L+S ++ Sbjct: 426 DCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLSSDQIG 485 Query: 463 DISVAI--GIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 + A+ GI D + ++RY KI ++ DAD DG HI TLL F + L++ G++Y Sbjct: 486 TLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIERGYIY 545 Query: 521 VALPPLYRIDLGKEVYYALTEEEKEGVL 548 +A PPLY+ GK Y + E + L Sbjct: 546 IAQPPLYKASKGKSSRYLKDDAEMDAFL 573 Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 551 LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKK 610 L + +QR+KGLGEMNP QL ETTLD R L+Q+ ++ DD D M L+ Sbjct: 729 LDAGRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVNHADD--ADDMFSRLMG-D 785 Query: 611 RSEDRRNWLQEKGDMAEIEV 630 E RR ++QE AE++V Sbjct: 786 LVEPRREFIQENALDAEVDV 805 >UniRef50_Q9Z8R3 DNA gyrase subunit B n=80 Tax=cellular organisms RepID=GYRB_CHLPN Length = 805 Score = 675 bits (1742), Expect = 0.0, Method: Composition-based stats. Identities = 219/575 (38%), Positives = 329/575 (57%), Gaps = 24/575 (4%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y+A AI VL GL+ VR RPGMY T +HL EV+DNS+DEA+AG+ R+DV + Sbjct: 6 KNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSRIDVRI 65 Query: 60 HADQSLEVIDDGRGMPVDIHPEEG------VPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 D + ++D+GRG+P+++H E V A+E++L LHAGGKF +Y+ SGGLHG Sbjct: 66 LEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVSGGLHG 125 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF 173 VG+S VNALS+++ V +D + Y + F G V LQ V ++ GT + F+PD Sbjct: 126 VGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLQYVSVSDRQ--GTEIVFYPDPKI 183 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLNDYLAEAVNGLP 231 F + F S L L+ A L G+ I F+D+ + + + Y+ G+ +++ Sbjct: 184 FSTCTFDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVTFFYEGGIQSFVSYLNQNKE 243 Query: 232 TLPEKPFI--GNFAGDTEAVDW--ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 +L +P G GD +++ AL W EL+ SY N IPT QGGTH+ G L Sbjct: 244 SLFSEPIYICGTRVGDDGEIEFEAALQWNSGYSELVY-SYANNIPTRQGGTHLTGFSTAL 302 Query: 288 LDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 + + + N+ + L+ EDI + V+SVK+ +PQF GQTK++L + ++ Sbjct: 303 TRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNSDVSSVA 362 Query: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLAD 403 VV +A ++ +N Q A ++ + +AQ R A K +RK LPGKL D Sbjct: 363 QQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSARLPGKLID 422 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C +D + E+++VEGDSAGGSAKQ RDR +QAI+P++GKILN + ++ +QE+ Sbjct: 423 CLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQEIGT 482 Query: 464 ISVAIGIDP--DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYV 521 I A+G D+ +LS+LRY +I I+ DAD DG HI TLL F +H AL+++ VY+ Sbjct: 483 IIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENECVYI 542 Query: 522 ALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKG 556 A PPLY++ K+ Y L+E+E + L L + Sbjct: 543 AQPPLYKVSKKKDFRYILSEKEMDSYLLMLGTNES 577 Score = 75.7 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 5/88 (5%) Query: 536 YYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDED 595 Y T EE L+ L RK +QR+KGLGEMN QL +TT++P R L+ +++ +D Sbjct: 713 YSCYTLEEVINYLKNLGRKG--IEIQRYKGLGEMNADQLWDTTMNPEQRTLIHVSL--KD 768 Query: 596 DQRTDAMMDMLLAKKRSEDRRNWLQEKG 623 D + ML+ + RR +++ Sbjct: 769 AVEADHIFTMLMG-EEVPPRREFIESHA 795 >UniRef50_O67137 DNA gyrase subunit B n=13 Tax=cellular organisms RepID=GYRB_AQUAE Length = 792 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 234/574 (40%), Positives = 325/574 (56%), Gaps = 14/574 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y A+AI+ ++GLE VR RP MY +HL E++DN+VDEA+AG+A+ + V + Sbjct: 10 QEYTAEAIKAVSGLEHVRLRPAMYIGDIGERGLHHLIWEILDNAVDEAVAGYARNISVTI 69 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S+ V DDGRG+PVDIHPE G PAVE++ L AGGKF K Y +SGGLHGVG SVV Sbjct: 70 HRDNSVTVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKFEKKVYTYSGGLHGVGASVV 129 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS+ + V V RDG++Y +AF+ GE V+ L VVG KR GT V F PD F++ Sbjct: 130 NALSEWLIVEVYRDGKIYRMAFKRGEVVEPLHVVGETKKR--GTKVSFKPDPEIFETTEI 187 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 + ++ A L P V+ DE + + G+ + + G L + Sbjct: 188 KFDIVEKRVRELAYLNPEVKFELTDERLGKHLIYKFDRGIEELVKYLNEGKEPLFKDIIR 247 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 + VD A ++ + + ES+VN I T++GGTHV G R GL A+ + Sbjct: 248 IQGEKEGVIVDIAFQYVKD-YKERIESFVNNIKTVEGGTHVTGFRSGLSKAVIRMAQGLK 306 Query: 300 ILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWL 358 + + ED+ + V++ K+ +PQF GQTK +L ++ V + D + Sbjct: 307 LAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNVKQIVESITYDFLTSYF 366 Query: 359 NQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELF 415 + + + E AI +A R A K V RK LPGKLADC+ D ++ E+F Sbjct: 367 EKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPGKLADCSETDPSKCEIF 426 Query: 416 LVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD 475 LVEGDSAGGSAKQARDR YQAI+PL+GKI+N + D+VL++ E+ I A+G D Sbjct: 427 LVEGDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALGCGIGED 486 Query: 476 -DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKE 534 DL +LRY KI ++ DAD DG HI TLL F + LV+ G+VY+A PPLYR+ GK+ Sbjct: 487 LDLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLYRVKKGKK 546 Query: 535 VYYALTEEEKEGVLEQLKRKKGK---PNVQRFKG 565 Y ++E E L R+KG+ + FKG Sbjct: 547 EIYIKDDKEFEHFLLNEIREKGRLVDAREKEFKG 580 Score = 75.7 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 4/77 (5%) Query: 555 KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSED 614 + VQR+KGLGEMNP QL ETT++P TRRL ++ I ED D + +L+ ++ E Sbjct: 719 RSGMEVQRYKGLGEMNPEQLWETTMNPKTRRLKKVKI--EDAAEADRIFTILMG-EQVEP 775 Query: 615 RRNWLQEKGDMAE-IEV 630 RR +++ + ++V Sbjct: 776 RREFIEAYAKEVKHLDV 792 >UniRef50_B9ZQ26 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ26_9GAMM Length = 650 Score = 672 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 257/648 (39%), Positives = 374/648 (57%), Gaps = 24/648 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y +++I+VL GLEPVR+RPGMY T HL E++DN+VDEA+AGH ++V+ Sbjct: 8 ARQYTSESIQVLEGLEPVRKRPGMYIGGTDSSGLRHLLNEILDNAVDEAIAGHGDEIEVV 67 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 H D S V D+GRG+P+D+H E+G+ A L++ LHAGGKF N Y+ SGGLHGVG +V Sbjct: 68 FHQDGSYSVNDNGRGIPIDMHREKGMHAAALLVTTLHAGGKFDNAAYKVSGGLHGVGAAV 127 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD-SP 177 NA+S R ++++RRDGQ Y F G D ++ G TGT + FWPD FD Sbjct: 128 TNAMSTRFDMDIRRDGQRYQQTFTEGGAPSDPEIKRYTG-SYTGTLIRFWPDLARFDEDA 186 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEI------NNTEQRWCYQDG---LNDYLAEAVN 228 + +K A L PG++++ ++E+ + + ++ + D ++ + Sbjct: 187 EIDFDFMADRMKRTAYLVPGLQLSIREEVASEGGDEPRQAVFRFESFSQIIEDLSVDSGD 246 Query: 229 GLPTLPEKPFIGNFAGDTE-AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 + + E + G E V AL W + Y N+IPT GTH+ GLR+ + Sbjct: 247 AISEIIEADSAEHIDGQGEIEVAVALRWHERNR-TVLAGYANIIPTAD-GTHMTGLRKAV 304 Query: 288 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 A+ + E N+L +L +DI ++V++ DP F GQTKE+L + VS Sbjct: 305 TQAVNNYAEANNLLRGNQELKGDDIQAGLIAAVAVRLADPLFQGQTKEKLKNGPVTGVVS 364 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK----VVRKKLTSGPALPGKLAD 403 ++ A +N + A + E A + + R A K V RK + S ALPGKLAD Sbjct: 365 RAIRAALDHAFEENPKMARAIVEKAKLAQKAREAADKAAEMVVNRKSVISATALPGKLAD 424 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C QD +++ELF+VEGDSAGGSAK R+REYQAI+PLKGKILNT+ +VL S EV + Sbjct: 425 CQEQDPSKSELFIVEGDSAGGSAKSGREREYQAILPLKGKILNTYRADPAKVLKSDEVKN 484 Query: 464 ISVAIGIDPDS-DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA 522 + +A+G P S DL +LRY +I ILADADSDG HIATL+ F + L++ G+VY+A Sbjct: 485 LMLALGCGPKSHFDLEKLRYHRIVILADADSDGHHIATLVLTYFHTNAPELIESGYVYIA 544 Query: 523 LPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582 LPPLYR+ GK+ Y + E E + Q K K VQRFKGLGEMN QL E +DP Sbjct: 545 LPPLYRVRKGKQSAYLKDDRELEAFMAQQKNPD-KWQVQRFKGLGEMNAEQLWEAAMDPE 603 Query: 583 TRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 TRR+ ++ ++ + + + ++L+ + RR +++E + A I+V Sbjct: 604 TRRIARVQYSEQGREGDNEVFEVLMGAE-VPPRRAFIEEYAEKAVIDV 650 >UniRef50_UPI0001A7B046 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Arabidopsis thaliana RepID=UPI0001A7B046 Length = 693 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 232/681 (34%), Positives = 366/681 (53%), Gaps = 58/681 (8%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 ++ Y+++ I+VL GL+PVR+RPGMY +T +HL E++DN++DEA AG A ++DV+ Sbjct: 14 SKDYSSEHIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGFASKIDVV 73 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN--YQFSGGLHGVGI 116 LH+D S+ + D+GRG+P D+HP G ++E +L LHAGGKF K+ Y SGGLHGVG+ Sbjct: 74 LHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVGL 133 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDL--QVVGTCGKRNTGTSVHFWPDET-- 172 SVVNALS+ +EV VRRDG + + G+ V L V+ + GT + FWPD+ Sbjct: 134 SVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEGF 193 Query: 173 --FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ----RWCYQDGLNDYLAEA 226 F + +F + + ++ A L P V I+ K E ++ E+ + Y GL +Y++ Sbjct: 194 ALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWL 253 Query: 227 VNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 L + + VD +L W + Y N I T+ GGTH+ G++ Sbjct: 254 NTDKKPLHD-VLGFRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 312 Query: 287 LLDAMREFCEYRNILP---------------------------------RGVKLSAEDIW 313 L + + ++ + + LS E + Sbjct: 313 LTRTLNSLAKKLKVIKVKGYIIYSSPWIETKFKYSSALKRHALRTINNEKDISLSGEHVR 372 Query: 314 DRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI 373 + ++SVK+ +P+F GQTK RL + + V V++ +L + E + ++ Sbjct: 373 EGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKSL 432 Query: 374 SSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR 430 ++ + + A + V K + +LPGKLADC++ D +E+F+VEGDSAGGSAKQ R Sbjct: 433 NAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQGR 492 Query: 431 DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQ--LRYGKICIL 488 DR +QAI+PL+GKILN + ++E+ ++ + +G+ +D ++ LRY KI IL Sbjct: 493 DRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIIL 552 Query: 489 ADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVL 548 DAD DG HI TLL F ++ RAL G +YV +PPL++++ GK+ +Y + + + Sbjct: 553 TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKIT 612 Query: 549 EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA 608 N+QRFKGLGEM P QL ETT++P+TR L QL +D D T+ + L+ Sbjct: 613 ASFP-GNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVD--DAAETNMVFSSLMG 669 Query: 609 KKRSEDRRNWLQEKGDMAEIE 629 R + R+ ++ +E Sbjct: 670 -ARVDVRKELIKSAATRMNLE 689 >UniRef50_B3R5I8 DNA topoisomerase IV, subunit B n=15 Tax=Proteobacteria RepID=B3R5I8_CUPTR Length = 663 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 322/660 (48%), Positives = 415/660 (62%), Gaps = 32/660 (4%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 T Y+ +I VL GLEPV++RPGMYT T P H+ QEVIDN+ DEAL GH + V LH Sbjct: 5 TSQYSESSIRVLKGLEPVKQRPGMYTRTDNPLHIVQEVIDNASDEALGGHGSEILVTLHR 64 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK---NYQFSGGLHGVGISV 118 D SL V DDGRG+PV IHPEEGVP VE++ RLHAGGKF Y FSGGLHGVG+SV Sbjct: 65 DGSLSVEDDGRGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGKGGAYAFSGGLHGVGVSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG-TCGKRNTGTSVHFWPDETFFDSP 177 NALS +++V V RDG + F G+ L G++ GT V WPD +FDS Sbjct: 125 TNALSTQLDVTVWRDGMCSTLTFSGGDVTVPLASRKLERGEKKNGTRVQVWPDARYFDSA 184 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNG-------L 230 ++ L +L++KAVL PGV++T E Q W Y GL YL EA+ + Sbjct: 185 AIPLAELQRLLRSKAVLLPGVKVTLVTEKTGERQTWQYDQGLKGYLVEALAQGSGAELVI 244 Query: 231 PTLPEKPFIGNFAG-------DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGL 283 P + F A D E W + W E G + ESYVNLIPT GGTH +GL Sbjct: 245 PMFEGEHFADPDANPGEEGFADGEGASWVVAWT-EDGAPVRESYVNLIPTPAGGTHESGL 303 Query: 284 RQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCA 343 R+GL A++ F E + P+GVKL +ED++ R ++VLS K+ DPQF GQ KERL+SR Sbjct: 304 REGLFQAVKSFIEMHALQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQIKERLNSRDAV 363 Query: 344 AFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLAD 403 VS + A LWLN +V+ + LAE+ I AQ R RAA+KV +KK + LPGKL D Sbjct: 364 RLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQARTRAAQKVEKKKGSGVAVLPGKLTD 423 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C + D+ R ELFLVEGDSAGGSAK RD+E+QAI+PL+GK+LNTWE D + A+ EVHD Sbjct: 424 CESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDRLFANNEVHD 483 Query: 464 ISVAIGIDP----DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHV 519 I+VAIG+DP D DLS LRYGKICIL+DAD DG HI LL LF +HF L++ G+V Sbjct: 484 IAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLFFRHFPKLIETGNV 543 Query: 520 YVALPPLYRI------DLGKEVYYALTEEEKEGVLEQLKRKK---GKPNVQRFKGLGEMN 570 YVA PPL+R+ + YAL E E E + ++L + + RFKGLGEM+ Sbjct: 544 YVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLLKDGVKENSWQISRFKGLGEMS 603 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 QL ETT++P+TRRL+ +T+ + D +T MM+ML+ K + RR+WL+EKG+ E ++ Sbjct: 604 AEQLWETTMNPDTRRLLPVTLGEYDLPQTVEMMNMLMGKGEAAQRRSWLEEKGNEVEADI 663 >UniRef50_B2URM5 DNA gyrase subunit B n=25 Tax=Bacteria RepID=B2URM5_AKKM8 Length = 852 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 230/599 (38%), Positives = 329/599 (54%), Gaps = 30/599 (5%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y A I+ L GLE VR+RPGMY +H EV+DNS+DE LAG+ ++D+++ Sbjct: 19 HEYGAAQIDKLEGLEAVRKRPGMYIGDPDERGLHHCVFEVLDNSIDEHLAGYCSKIDIVI 78 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S+ ++D+GRG+PVDIHP+ G+PAVEL+L LHAGGKF Y++SGGLHGVG V Sbjct: 79 HVDGSISIVDNGRGIPVDIHPKFGIPAVELVLTNLHAGGKFGQGAYKYSGGLHGVGAKCV 138 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPR 178 NALS + VRRDG+ Y I FE G+ V+ L+ VG+C TGT++ F+PD T F D+ Sbjct: 139 NALSDWFKAEVRRDGKRYQIKFERGKTVEPLRTVGSCACEVTGTTITFFPDATIFTDTTE 198 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNT--EQRWCYQDGLNDYLAEAVNGLPTLPEK 236 F RLT L+ A L PG+ I DE + + Y+DG+ +++ + + E Sbjct: 199 FKFDRLTTRLRELAFLNPGLVIELIDEREAPARRETFFYKDGIVEFVRQLGTNKEVINED 258 Query: 237 PFI------------GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLR 284 P G D VD + E + N I GGTH++G R Sbjct: 259 PISISGVRKVEVEYDGKKMEDDVLVDVVFQYN-NTYETNILCFANSIYNGDGGTHLSGFR 317 Query: 285 QGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCA 343 L + + + +L + LS ED+ + V+SVKM +P+F+ QTK++L + + Sbjct: 318 GALTRVINGYAKANGLLKEKDPSLSGEDVREGLVAVISVKMPNPRFSSQTKDKLVNTEIE 377 Query: 344 AFVSGVVKDAFILWLNQNVQAAELLAEMAI--SSAQRRMRAAKKVVRKKLTSGPALPGKL 401 V VV + + +N A+ + E +I + A+ R A++ VRK S LPGKL Sbjct: 378 GVVGNVVYEEIKTYFEENPAMAKKIIEKSITAARAREAARKARETVRKSALSIGGLPGKL 437 Query: 402 ADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV 461 ADC+ +D + ELF+VEGDSAGGSAK RDR QAI+PL+GK+LN + D+ L S+E+ Sbjct: 438 ADCSDRDPAKCELFIVEGDSAGGSAKMGRDRRTQAILPLRGKVLNVEKARLDKALGSKEI 497 Query: 462 HDISVAIGIDPDSDD------LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK 515 ++ AIG D L ++RY KI I+ DAD DG HI TLL F +H LV+ Sbjct: 498 QNMITAIGAGIGEGDDEASFKLDRVRYHKIIIMTDADVDGAHIRTLLLTFFCRHMPQLVR 557 Query: 516 HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQL 574 G++Y+A PLYRI K+ Y + L +L ++ G +P +L Sbjct: 558 AGYLYIAQAPLYRIIRRKKEEYVQDDVALNRKLIELA--VNDVTLRFADGSRSFSPEEL 614 Score = 72.7 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 4/110 (3%) Query: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQ--LKRKKGKPNVQRFKGLGEMNPMQLRETTLDP 581 PL+ + G+ +T + + + K + RFKGLGEM+ L +TT+DP Sbjct: 744 TPLFELVEGEGDKEKVTPLFSVMDILESVISIGKRGVEITRFKGLGEMDAKDLFKTTMDP 803 Query: 582 NTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 R L+++ ++D++ R D M +L+ E R+N++ + ++ +++ Sbjct: 804 ERRELLRVILNDDNAVRADEMFTILMG-DVVEPRKNYIVDHALNVRNLDI 852 >UniRef50_B1ZTK2 DNA gyrase subunit B n=194 Tax=cellular organisms RepID=B1ZTK2_OPITP Length = 861 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 219/579 (37%), Positives = 317/579 (54%), Gaps = 24/579 (4%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y+A I+ L GLE VR+RP MY T +H EV+DNSVDEALAG A + V Sbjct: 17 AEAYDASKIQKLEGLEGVRKRPDMYIGDTNERGLHHCVFEVVDNSVDEALAGFASLIVVT 76 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 +H D S + DDGRG+PVD+HP +PA+EL+L LHAGGKF YQ SGGLHGVG Sbjct: 77 IHLDGSCSIEDDGRGIPVDMHPVYKIPALELVLTNLHAGGKFGKGAYQVSGGLHGVGAKC 136 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP- 177 VNA+S+ E VRR G+VY + FE G Q +QV+G K TGT + F PD F + Sbjct: 137 VNAVSEWFEAEVRRGGKVYQMRFEQGITTQKMQVIGDTKK--TGTKITFKPDPEIFKTTR 194 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 F L+ L+ A L PGV I DE + R+ ++DG+ +++ + +KP Sbjct: 195 EFQYEILSKRLRELAFLNPGVHIELADERSQKGDRFYFRDGITEFVRYLNQNKNVVHDKP 254 Query: 238 FIGNFAGDTEA--------VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 + + E VD ++ + + + +Y N I ++GGTH++G R L Sbjct: 255 ITFSDSVPNETNAALPNIVVDVSMQYNDSYNDQVF-AYANSIYNIEGGTHLSGFRTALTR 313 Query: 290 AMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + F N+L + ++ +D+ + V+SVK+ +P+F GQTK +LS+ + V Sbjct: 314 VVNNFARANNLLKEKDPSITGDDVREGLVAVISVKVPEPRFEGQTKTKLSNGEIDGIVQR 373 Query: 349 VVKDAFILWLNQNVQAAELLAEMAIS--SAQRRMRAAKKVVRKKLTSGPALPGKLADCTA 406 +V + + N A+ + + ++ A+ R A++ VRK SG LPGKLADC+ Sbjct: 374 IVGEKLRFYFEANTNIAKRIIDKTLNAARAREAARKARETVRKGALSGGGLPGKLADCSE 433 Query: 407 QDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 466 +D EL++VEGDSAGGSAKQ RDR YQAI+PL+GK++N + D+VLA++E+ + Sbjct: 434 RDPALCELYIVEGDSAGGSAKQGRDRRYQAILPLRGKVINVEKARLDKVLANEEIRTLIT 493 Query: 467 AIGIDPDS------DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 A G D + RY K+ I+ DAD DG HI TLL + R L G VY Sbjct: 494 AFGTGIGDHEGDGAFDGDKARYHKVIIMTDADVDGSHIRTLLLTFLYRQMRGLFDRGFVY 553 Query: 521 VALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPN 559 +A PPLY+I K Y +++ +L +L + Sbjct: 554 IAQPPLYKIKRKKREQYIDNDDQLNRILLELGSEDVVLT 592 Score = 77.3 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 4/91 (4%) Query: 541 EEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTD 600 E V E + ++QR+KGLGEMNP QL ETT+DP RRL++++I+ D + D Sbjct: 774 HSPLEIVTEIRANGRKGLSIQRYKGLGEMNPKQLFETTMDPEKRRLLKVSIN--DAAKAD 831 Query: 601 AMMDMLLAKKRSEDRRNWLQEKGDMAE-IEV 630 A+ +L+ + RR ++++ + ++V Sbjct: 832 ALFTLLMGDE-VPPRRQFIEDNALNVQYLDV 861 >UniRef50_P66938 DNA topoisomerase 4 subunit B n=158 Tax=Bacteria RepID=PARE_STAAM Length = 663 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 233/644 (36%), Positives = 362/644 (56%), Gaps = 33/644 (5%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y+ D+I+VL GLE VR+RPGMY +T +HL E++DNSVDE L G+ +DV + Sbjct: 5 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTI 64 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + D S+ + D+GRGMP IH + G P VE+I LHAGGKF Y+ SGGLHGVG SVV Sbjct: 65 NKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 123 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGE-KVQDLQVVGTCGKRNTGTSVHFWPDETFFD-SP 177 NALS+ +EV + RDG +Y+ +F+NG L G K T V F PD+T F S Sbjct: 124 NALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGT--KVTFKPDDTIFKAST 181 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE--QRWCYQDGLNDYLAEAVNGLPTLPE 235 F+ L+ L+ A L ++IT D + E + + Y++G+ ++++ G L + Sbjct: 182 SFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHD 241 Query: 236 KPFIGNFAGDTEAVDWALLW-LPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 + F+G+ ++ + + + S+VN + T GGTH G + + ++ Sbjct: 242 ---VATFSGEANGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNDY 298 Query: 295 CEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDP--QFAGQTKERLSSRQCAAFVSGVVK 351 N L + L DI + V+SV++ + QF GQTK +L + + + V VV Sbjct: 299 ARRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVA 358 Query: 352 DAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV-----RKKLTSGPALPGKLADCTA 406 D +L + Q ++ L + AI + Q R A K +K L GKL + Sbjct: 359 DKLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQS 418 Query: 407 QDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 466 ++ + EL+LVEGDSAGGSAK RDR++QAI+PL+GK++NT + +++ ++E++ I Sbjct: 419 KNTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIH 478 Query: 467 AIGIDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 IG +D + Y ++ I+ DAD+DG HI LL F K+ + LV+ G V++ALPP Sbjct: 479 TIGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPP 538 Query: 526 LYRIDLG----KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDP 581 LY+++ G K V YA T+EE + ++L + +QR+KGLGEMNP QL ETT++P Sbjct: 539 LYKLEKGKGKTKRVEYAWTDEELNKLQKELGK---GFTLQRYKGLGEMNPEQLWETTMNP 595 Query: 582 NTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 TR L+++ ++DE R+ + L+ + + RR W+++ + Sbjct: 596 ETRTLIRVQVEDE--VRSSKRVTTLMG-DKVQPRREWIEKHVEF 636 >UniRef50_D0LFL2 DNA gyrase subunit B n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFL2_HALO1 Length = 821 Score = 662 bits (1708), Expect = 0.0, Method: Composition-based stats. Identities = 223/560 (39%), Positives = 324/560 (57%), Gaps = 14/560 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDV 57 Y+AD+I VL GLE VR+RPGMY T +H+ EV+DN+VDEALAG+ RVD+ Sbjct: 12 ATEYDADSITVLKGLEAVRKRPGMYIGDTDDGSGLHHMVHEVVDNAVDEALAGYCDRVDI 71 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 +H+D S+ V D+GRG+PV +H +EG PA EL++ LHAGGKF+ +Y+ SGGLHGVG+S Sbjct: 72 TIHSDNSITVEDNGRGIPVAVHKDEGRPAAELVMTVLHAGGKFNQNSYKVSGGLHGVGVS 131 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS+ +++ +RR+G+VY + G V DL+ GT +R GT + F PD F Sbjct: 132 VVNALSRTLKLEIRREGKVYFQEYRQGIPVSDLRSTGTTDRR--GTKITFLPDPEVFKQT 189 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 FS L+ + + L G+ I DE + +Q +CY+ G+ ++A+ + E Sbjct: 190 EFSFGALSQRFRELSYLNSGLTIAITDERESQQQVFCYEGGMASFVADLNANKNPVTE-V 248 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 + VD A+ W E + N I GGTH+ G RQGL + + Sbjct: 249 VAFTDEREGVTVDIAMQWNDSYAE-QINCFTNTIKNKDGGTHLTGFRQGLTRTVNAYAAE 307 Query: 298 RNILP--RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 +L +G LS ED+ + V+SVK+ DP+F+ Q K++L S + A V+ VV D Sbjct: 308 NKLLKELKGNNLSGEDLREGLVAVISVKVADPKFSNQPKDKLVSSEVAGAVAAVVNDKLQ 367 Query: 356 LWLNQNVQAAELLAEM---AISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412 + N + A + + A + +A + V RK +LPGKLADC +D ++ Sbjct: 368 SFFEHNPKDARSIIQKAVVAARARDAARKAREMVQRKGALEYTSLPGKLADCQERDPSKC 427 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 ELF+VEG+SAGGSAKQ RDRE+QAI+PLKGKILN D++L+SQE+ + A+G Sbjct: 428 ELFIVEGESAGGSAKQGRDREFQAILPLKGKILNVERARMDKMLSSQEIVTLITALGCGI 487 Query: 473 D-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 D+ +LRY +I I+ DAD DG HI TLL F + + ++++ H+Y+A PPL+++ Sbjct: 488 GPEKDMGRLRYHRIVIMTDADVDGSHIRTLLLTFFFRQYPEIIENNHLYIAQPPLFKVKR 547 Query: 532 GKEVYYALTEEEKEGVLEQL 551 GK Y E E + L Sbjct: 548 GKSETYLKNEHSLEDYVLDL 567 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 6/107 (5%) Query: 525 PLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTR 584 P + G+++ T +E +E + RK ++QR+KGLGEMN QL +TT+ P+ R Sbjct: 720 PYVLVHKGEDIGTVTTLDELAEAVEAVGRKG--LSIQRYKGLGEMNSDQLWDTTMCPDQR 777 Query: 585 RLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 L+Q+ ID + + +L+ E RR++++ ++ +++ Sbjct: 778 TLLQVRID--AREEAADVFSVLMG-DLVEPRRHFIENNALNVRNLDI 821 >UniRef50_C4G1I8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1I8_ABIDE Length = 677 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 231/683 (33%), Positives = 351/683 (51%), Gaps = 59/683 (8%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDV 57 M++ Y+ I +L GLE VR+RPGMY +T +HL E++DN +DE LAG ++D+ Sbjct: 1 MSENYDGSQIVILEGLEAVRKRPGMYIGSTGTRGLHHLIWEILDNGIDEHLAGFCSQIDL 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 IL D + + D GRG+PVDIHP + +P ++ LHAGGKFS Y+ SGGLHGVG S Sbjct: 61 ILRNDGGITIRDYGRGVPVDIHPTKKIPTERVVYTVLHAGGKFSGGAYKVSGGLHGVGAS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGE------KVQDLQVVGTCGKRNTGTSVHFWPDE 171 VVNALS ++ V +RRDG VY +ENG +L V TC K + GTSV F+PD+ Sbjct: 121 VVNALSTKMIVEIRRDGNVYVDEYENGGHPVTALVKGELPAVKTCKKSDKGTSVTFYPDD 180 Query: 172 TFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLP 231 T F++ F + LK A L G+++ FKDEI E+ + +DG+ Y+ Sbjct: 181 TIFETIEFKADIIKKKLKETAFLNKGLKLNFKDEITGEEKTYEEKDGIKSYVKYINRETE 240 Query: 232 TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAM 291 + ++ V+ A + G +Y N I + GGT V G + L M Sbjct: 241 VIHDEVVYVEGESGDIEVEVAFQYT-NGFSEQINAYCNRINVVDGGTLVTGFKTALTRVM 299 Query: 292 REFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV 350 ++ L + +DI + ++S+K DPQF GQTK +L + V VV Sbjct: 300 NQYARELGYLKGKDDNFDGKDIRNGIVAIISIKHPDPQFEGQTKTKLGNTDAKTAVEEVV 359 Query: 351 KDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRK-KLTSGPALPGKLADCTAQDL 409 + + ++N++ + + ++A S R + K K + + KLA C++++ Sbjct: 360 SKEIVRYFDKNIEVLKSILDLAQKSYSARTASDKARNAVLKSLNDFDVKSKLASCSSKNA 419 Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 E++LVEGDSAGG+ K AR+R+ QA++PL+GKILN + + +++L + E+ + G Sbjct: 420 EECEIYLVEGDSAGGTVKTARNRKTQAVLPLRGKILNVEKAALEKILVNNEIKSMIATFG 479 Query: 470 IDP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR 528 D D+++LRY KI IL DAD DG HI+TLL F + L+K G +Y LPPLY+ Sbjct: 480 CGIGDEFDITKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPDLIKEGKIYRGLPPLYK 539 Query: 529 I---DLGKEV--------------------------------------YYALTEEEKEGV 547 + + G +V Y + E E Sbjct: 540 VDYEESGAKVLEEKKLGEGQLDIFQLGVEDKPSEKQLKAKSGKKKKKSEYIFNDYELEKF 599 Query: 548 LEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLL 607 + RK +QR+KGLGEM+ QL ETTLDP TR L ++ I D D + +L+ Sbjct: 600 KKNKNRKI--LEIQRYKGLGEMDASQLWETTLDPKTRSLARIDISDT--VEADEVTSLLM 655 Query: 608 AKKRSEDRRNWLQEKGDMAEIEV 630 + RR ++ + A++++ Sbjct: 656 S-SVVPPRREFIMNEAKYAKVDI 677 >UniRef50_Q1V1K8 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1V1K8_PELUB Length = 685 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 248/686 (36%), Positives = 381/686 (55%), Gaps = 63/686 (9%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTD----TTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 TY AD+I+VL GLE VR+RPGMY T +H+ EV+DNS+DEALAGH K +DV Sbjct: 5 STYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNIDVK 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 +++D ++ V DDGRG+PVD+H E + A E+I+ +LHAGGKF + +Y+ SGGLHGVG+SV Sbjct: 65 INSDGTITVRDDGRGIPVDMHKGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVGVSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS+++++ + RDG Y I F++G L+V+G + TGT + F P + F S + Sbjct: 125 VNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKS--KETGTQITFLPSKEIFSSIK 182 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ--RWCYQDGLNDYLAEAVNGLPT---- 232 F+ S + ++ A L G++IT D E+ + + G+ +++ Sbjct: 183 FTPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIVFKFDGGVLEFVDFLDEKREKLVNK 242 Query: 233 ----LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288 L +KP D ++ +L W GE + Y N I GGTH+ G R L Sbjct: 243 TGNDLFKKPIYIEGKKDNIEIECSLKWNASYGEDIYP-YTNNIYQKDGGTHLLGFRSALT 301 Query: 289 DAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 + ++ N+L + + +S +DI + V+S K+ DP+F+ QTK++L S + V Sbjct: 302 RVINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDKLVSSEVRMIVE 361 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTSGPALPGKLADC 404 +V + +W +QN ++++ + +A R +A + V RK LPGKLADC Sbjct: 362 SIVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALELSGLPGKLADC 421 Query: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNT----------------- 447 TELF+VEGDSAGGSAKQ R+R QA++PL+GKILNT Sbjct: 422 QIGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIVLKKNSNRDGSE 481 Query: 448 -WEVSSDEVLASQEVHDISVAIGIDPDSDDLS--QLRYGKICILADADSDGLHIATLLCA 504 S ++++S EV + A+G+DP +D+ LRYGKI I+ DAD DG HI LL Sbjct: 482 HRTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADVDGSHIRALLLT 541 Query: 505 LF-VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKR---------- 553 F K F L+++GHVY+A PPL++I+ G + Y E+E E + + + Sbjct: 542 FFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNNKELQKIKKGTK 601 Query: 554 --------KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDM 605 +K + ++QRFKGLGEMNP +L TTLDP TR L+Q+ +D ++ ++ Sbjct: 602 EFTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPETRNLLQVQYS-KDIKKDQDLIHT 660 Query: 606 LLAKKRSEDRRNWLQEKG-DMAEIEV 630 L+ R++++ ++ +++ Sbjct: 661 LMGND-VALRKDFIVSNAINVQNLDI 685 >UniRef50_Q1RHT8 DNA gyrase subunit B n=702 Tax=Proteobacteria RepID=GYRB_RICBR Length = 808 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 222/649 (34%), Positives = 333/649 (51%), Gaps = 35/649 (5%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTD----TTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 +Y AD+I+VL GLE VR+RPGMY + +H+ EV+DN++DEALAG+ V V+ Sbjct: 11 SSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDEALAGYCDLVRVV 70 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+ + S+ V D+GRG+PV+IH EEG+ A E+I+ +LHAGGKF +Y+ SGGLHGVG+SV Sbjct: 71 LNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 130 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS +E+ + R+ + I F NG L VV + GT V F+P F + Sbjct: 131 VNALSDWLELRIWRNNTEHLIRFNNGITEAPLAVVKENVDKK-GTEVTFFPSVETFTNIE 189 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEI--NNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 F S + H L+ A L GV+I D E + Y G+ Y+ + Sbjct: 190 FDFSIIEHRLRELAFLNSGVKILLTDNRFEEVKEVEFYYTGGIEAYVKYLDRAKHAVHSC 249 Query: 237 PFIGNFAGDT-EAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 + ++ +++ A+ W E + N I GGTH++ + GL + + Sbjct: 250 IVVNADNTESGISLELAMHWNDSYHE-NILCFTNNIRQRDGGTHLSAFKSGLTRVITAYL 308 Query: 296 EYRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 E + + S ED + VLSVK+ DP+F+ QTK++L S + V V Sbjct: 309 ENTGLNKKAKNAFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPIVENAVYTKV 368 Query: 355 ILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNR 411 + W ++ A+L+ + +A R A K RK + LPGKLADC A+D Sbjct: 369 LEWFEEHPADAKLIINKIMEAANAREAARKARELTRRKSVLEVSNLPGKLADCHAKDPAV 428 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 +ELF+VEGDSAGG+AKQ RD + QAI+PL+GKILN D++L S ++ + A+G Sbjct: 429 SELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGTLITALGTG 488 Query: 472 PD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 D L +LRY K+ I+ DAD DG HI TLL F +H L+ G++Y+A PPLY++ Sbjct: 489 VDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIAQPPLYKV 548 Query: 530 DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN------- 582 G Y E+ + L + + + L N +L + N Sbjct: 549 KKGASELYLKNEQALQDYLVKSAISDATLTLDNKEQLTNENLEELMSKVIKFNSLLDHAS 608 Query: 583 ---TRRLVQL----------TIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 R + ++ D+E D R ++ L + ++S D+ +W Sbjct: 609 KKFNRSITEILAINDLLNNKIFDNESDSRLKKALNALNSLEQSPDKTDW 657 Score = 68.4 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 20/136 (14%) Query: 496 LHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKK 555 ++I+ L +F + L ++ + + + LT + + +K Sbjct: 692 INISKLALTIFDVFNKQL--------------KLVVKNQEFDILTPSILLNTIIECGKKG 737 Query: 556 GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDR 615 +VQRFKGLGEMN QL +TTLDP R L+Q+ + + D + + L+ E R Sbjct: 738 --ISVQRFKGLGEMNSDQLWDTTLDPKKRTLMQVRVAEVD--EAEGIFSTLMG-DVVEPR 792 Query: 616 RNWLQEKG-DMAEIEV 630 R ++Q ++ ++V Sbjct: 793 RQFIQSNALNVVNLDV 808 >UniRef50_B5YGU1 DNA gyrase subunit B n=9 Tax=Bacteria RepID=B5YGU1_THEYD Length = 759 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 228/560 (40%), Positives = 324/560 (57%), Gaps = 14/560 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 ++Y A+ I++L GLE VR RP MY +T +HL EV+DNSVDEALAG +++V L Sbjct: 18 ESYKAEHIKILKGLEGVRTRPAMYIGSTGVEGLHHLVYEVVDNSVDEALAGFCNKIEVRL 77 Query: 60 HADQSLEVIDDGRGMPVDIHPE--EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 H D S VID+GRG+P +IHP+ E A+E++L LHAGGKF +K Y+ SGGLHGVG+S Sbjct: 78 HTDGSCSVIDNGRGIPTEIHPDDPEKRTALEIVLTELHAGGKFESKAYKVSGGLHGVGLS 137 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS+ +EV V+RDG+V + G V ++V+G K TGT + F D F+ Sbjct: 138 VVNALSEWLEVEVQRDGKVVRQKYCRGIPVTGVEVIGQTEK--TGTKIKFKADPEIFEVT 195 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 FS L H K + L G++I DE + + + + G+ ++ + G L KP Sbjct: 196 EFSREILAHRFKELSYLNRGLKIILIDERDGYVEEFIKEGGIVSFVEDLNKGKKPLHPKP 255 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 D V+ A+ + EG ++VN I T +GGTH+ G + L + + Sbjct: 256 IYITGQKDRVIVEIAIQYN-EGYSEEILTFVNNINTKEGGTHLVGFKSALTRTINSYAML 314 Query: 298 RNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 +L G + LS ED+ + V+SVK+ +PQF GQTK +L + + V ++ + Sbjct: 315 NGLLKEGKESLSGEDVREGIVGVISVKIPEPQFEGQTKMKLGNSEVKGIVETILNEKLSR 374 Query: 357 WLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTE 413 WL +N A+ + E A +A+ R A K RK + LPGKLADCT +D + E Sbjct: 375 WLEENPNYAKRIIEKAKDAARAREAAKKAKELTRRKGILEDTTLPGKLADCTEKDPSHAE 434 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GID 471 LF+VEGDSAGGSAKQARDR QA++PL+GKILN + D++L S+E+ + AI GI Sbjct: 435 LFIVEGDSAGGSAKQARDRRSQAVLPLRGKILNVEKARIDKMLTSEEIKTLITAIGGGIG 494 Query: 472 PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 + + +RY KI ++ DAD DG HI TLL F + L++ G++Y+A PPLYRI Sbjct: 495 KEHFEPENVRYHKIILMTDADVDGAHIRTLLLTFFYRQMLPLIEKGYLYIAQPPLYRIKR 554 Query: 532 GKEVYYALTEEEKEGVLEQL 551 GK Y TE+E L + Sbjct: 555 GKWERYIQTEDEFHEFLMDI 574 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 4/98 (4%) Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 + T+ E + + K +QR+KGLGEMNP QL ETT+DP R L+Q+T+ Sbjct: 665 KTEAVKTKSLWELYNKVMDAVKKGLTIQRYKGLGEMNPEQLWETTMDPEKRTLLQVTV-- 722 Query: 594 EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 ED QR + + +L+ + E R+ ++ +++ Sbjct: 723 EDAQRANEIFTILMGDE-VEPRKEFIVRHALEVRNLDI 759 >UniRef50_B6BRC2 DNA gyrase subunit B n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BRC2_9RICK Length = 686 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 253/688 (36%), Positives = 384/688 (55%), Gaps = 64/688 (9%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTD----TTRPNHLGQEVIDNSVDEALAGHAKRVDV 57 TY AD+I+VL GLE VR+RPGMY T +H+ EV+DNS+DEALAGH K ++V Sbjct: 4 KNTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNINV 63 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 +++D ++ V DDGRG+PVD+H E A E+I+ +LHAGGKF + +Y+ SGGLHGVG+S Sbjct: 64 RINSDGTITVNDDGRGIPVDMHKGEKKSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVGVS 123 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS+++++ + RDG+ + I F+NGE + L++VG +N+GT + F P + F S Sbjct: 124 VVNALSEKLKLEINRDGKKHFIEFKNGEAIAPLKIVGKS--KNSGTQITFLPSKEIFSSI 181 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ--RWCYQDGLNDYLAEAVNGLPT--- 232 +FS + L ++ A L G++I F D E+ + + G+ +++ Sbjct: 182 KFSANILIKRMRELAFLNKGIKIIFTDASLKKEKVSEFKFDGGVLEFVNFLDEKREKLQN 241 Query: 233 -----LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 L +KP D ++ +L W E + Y N I GGTH+ G R L Sbjct: 242 KNGNDLFKKPIYIEGKKDNIELECSLKWNASYAEDIFP-YTNNIFQKDGGTHLLGFRSAL 300 Query: 288 LDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 + ++ N+L + + +S +DI + VLS K+ DP+F+ QTK++L S + V Sbjct: 301 TRVVNKYANEHNLLKKNKLAISGDDIKEGLTCVLSTKIPDPKFSSQTKDKLVSSEVRMIV 360 Query: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTSGPALPGKLAD 403 VV + +W +QN A+++ I +A R +A + V RK LPGKLAD Sbjct: 361 ETVVNEKLSIWFDQNPSVAKIILAKVIQAAMARDVARKARENVRRKGALELSGLPGKLAD 420 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNT---------------- 447 C TELF+VEGDSAGGSAKQ R+R QA++PL+GKILNT Sbjct: 421 CQIGKQEGTELFIVEGDSAGGSAKQGRNRANQAVLPLRGKILNTYVEDLSVKKNGNGDAS 480 Query: 448 ---WEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLL 502 + ++++S E+ + A+G+DP + DL LRYGKI I+ DAD DG HI LL Sbjct: 481 EQQRTKALSKMISSNEIVTLINALGLDPKTQEIDLKDLRYGKIIIMTDADVDGSHIRALL 540 Query: 503 CALF-VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKE---------------- 545 F K F L+++GHVY+A PPL++I+ G + Y E E E Sbjct: 541 LTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDELELENYIVKNSKELKKIKKG 600 Query: 546 --GVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMM 603 +++L+ +K K N+QRFKGLGEMNP +L TTLDP R L+Q+ +D ++ +++ Sbjct: 601 SKEYIKELELEKSKMNIQRFKGLGEMNPEELWSTTLDPENRNLLQVQYS-KDLKKDQSLI 659 Query: 604 DMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 L+ R++++ ++ +++ Sbjct: 660 HTLMGND-VALRKDFIISNAINVQNLDI 686 >UniRef50_UPI0001C311B1 DNA gyrase, B subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311B1 Length = 808 Score = 657 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 223/557 (40%), Positives = 313/557 (56%), Gaps = 13/557 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 + +Y+A I VL GLE VR+RPGMY +T +HL EV+DNSVDEALAGHA VDV Sbjct: 14 SPSYDAQDITVLEGLEAVRKRPGMYIGSTGIRGLHHLVYEVVDNSVDEALAGHASAVDVT 73 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN-YQFSGGLHGVGIS 117 +H D S+ V+D+GRG+PV + +EG PAVE++L LHAGGKF + Y+ SGGLHGVG+S Sbjct: 74 IHPDNSITVVDNGRGIPVAMMEKEGKPAVEVVLTVLHAGGKFGDGGGYKVSGGLHGVGVS 133 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS+++ V + RDG ++ + G L+ + TGT++ F PD+ +S Sbjct: 134 VVNALSEQLRVEIFRDGFAWSQDYVRGAPQGQLERGEATSE--TGTTITFLPDDEIMESL 191 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ-RWCYQDGLNDYLAEAVNGLPTLPEK 236 F + L L+ A L G+ I+ DE + Y G+ D++A + K Sbjct: 192 DFDFTTLEERLRETAFLTRGLRISLTDERGERRHVEFQYDGGIQDFVAYLNENKDPVQRK 251 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 + D AV+ A+ W E + S+ N I T +GG+H++G R L + ++ Sbjct: 252 IVYFSSESDEGAVEVAMQWNSSYQESVF-SFANNINTHEGGSHLSGFRSALTRTINKYAR 310 Query: 297 YRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 + L R L+ ED+ + V+S K+ +PQF GQTK +L + F +V Sbjct: 311 EKGFLKERDANLAGEDVREGLTAVISAKLAEPQFEGQTKTKLGNPGMQGFTESIVNKGLD 370 Query: 356 LWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRT 412 +L +N Q A + A+ +AQ R A K RK LPGKLADC+ +D + Sbjct: 371 EFLEENPQDARSVILKAVQAAQARSAARKARDLTRRKSALENSRLPGKLADCSVKDPALS 430 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 E+F+VEGDSAGGSAKQ RDR QAI+PL+GKILN D+VL + EV + AIG Sbjct: 431 EIFIVEGDSAGGSAKQGRDRSTQAILPLRGKILNVERARIDKVLGNNEVQALITAIGTGV 490 Query: 473 -DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 D DL + RY KI ++ DAD DG HI TL+ L + L+ G +Y+A PPLY++ Sbjct: 491 RDDFDLEKARYHKIILMTDADVDGAHIRTLVLTLLFREMMPLIDAGFIYIAKPPLYKLKQ 550 Query: 532 GKEVYYALTEEEKEGVL 548 GK Y + E E +L Sbjct: 551 GKNERYIEKDSELEEML 567 Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 6/108 (5%) Query: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583 P + I LG A++ +E + + + RFKGLGEMN QLRETT+DP T Sbjct: 706 TPPFDIRLGDHRETAVSFDELRSRVMDMA--GRGVEINRFKGLGEMNAEQLRETTMDPAT 763 Query: 584 RRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 R L ++T+ ED + + ML+ + E RRN+++E + ++V Sbjct: 764 RTLARVTM--EDAAAAERVFSMLMG-DQVEPRRNFIEENASLVTNLDV 808 >UniRef50_C1DUC4 DNA gyrase subunit B n=5 Tax=Bacteria RepID=C1DUC4_SULAA Length = 809 Score = 657 bits (1694), Expect = 0.0, Method: Composition-based stats. Identities = 236/647 (36%), Positives = 353/647 (54%), Gaps = 37/647 (5%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+A+AI+ +TGL+ VR RP MY +HL E++DN+VDEA+AG+AK + VI+H Sbjct: 10 EYSAEAIQAVTGLDHVRARPAMYIGDIGERGLHHLVWEILDNAVDEAMAGYAKNITVIIH 69 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 D S+ V DDGRG+PVDIHPE +PAVE++ L AGGKFS K YQ+SGGLHGVG SVVN Sbjct: 70 QDGSVTVEDDGRGIPVDIHPEFKIPAVEMVFTILGAGGKFSKKAYQYSGGLHGVGASVVN 129 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS + V V R+G++Y + G+ V L+VVG KR GT V F PD++ F++ Sbjct: 130 ALSSWLVVEVYRNGKIYRQEYSYGKPVYPLKVVGDTTKR--GTKVTFKPDDSIFETTTIK 187 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240 + ++ A L PGV DE + ++ + +++G+ D++ L ++ Sbjct: 188 FDIIQKRVRELAFLNPGVRFVVIDERKDIKEEFYFENGIVDFVRVLNQAKEPLFDEVIYV 247 Query: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300 D V+ A + E + ES+VN I T++GGTHV+G R L +M + + Sbjct: 248 KGEKDGVLVEVAFQYTKSYNE-VIESFVNNIKTVEGGTHVSGFRAALTRSMNKTLSGMKL 306 Query: 301 LPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLN 359 +S +D+ + V+SVK+ +PQF GQTK +L ++ V VV D + + Sbjct: 307 PKELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESVVGDYLLEYFE 366 Query: 360 QNVQAA---ELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFL 416 +N A A A + + +A + RK +LPGKLADC+ D ELF+ Sbjct: 367 KNKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSESDPQLCELFI 426 Query: 417 VEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD--- 473 VEG+SAGGSAKQ RDR QAI+PLKGKILN + D++L+++E+ I AIG Sbjct: 427 VEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVNAIGTGIGLPI 486 Query: 474 -----------SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA 522 DLS+LRY KI ++ADAD DG HI TLL LF + F ++++GH+Y+A Sbjct: 487 KSEDEEKKEDEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRFFPQIIENGHLYIA 546 Query: 523 LPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE-TTLDP 581 PPLY++ G+ Y +EE ++ + + F + QL++ L Sbjct: 547 QPPLYKLKKGRSEIYVKDDEELSKIVIDFATDEIAIEGKNF------SKSQLKDIAKLSK 600 Query: 582 NTRRLVQLTIDDEDDQRTDAMMDMLL------AKKRSEDRRNWLQEK 622 + L + +D D ++ + L K + ++ +L++K Sbjct: 601 EYKNLKESLYKRKDKVVIDTLLSLNLTEDDIRNKGKVKEVVEFLRQK 647 Score = 78.4 bits (192), Expect = 7e-13, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 6/105 (5%) Query: 527 YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 I ++ ++ V+ + VQR+KGLGEMNP QL ETT++P TRRL Sbjct: 710 VEISYKQKSIKVEDLDDLYDVI--FEAGMSGCEVQRYKGLGEMNPEQLWETTMNPKTRRL 767 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 +Q+TI ED D + +L+ ++ E RR ++ + +++ Sbjct: 768 LQVTI--EDAALADEVFSILMG-EKVEPRREFIMKYAKEVRNLDI 809 >UniRef50_B2UCF3 DNA gyrase subunit B n=47 Tax=Proteobacteria RepID=B2UCF3_RALPJ Length = 842 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 224/580 (38%), Positives = 316/580 (54%), Gaps = 34/580 (5%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTD----TTRPNHLGQEVIDNSVDEALAGHAKRVDV 57 +Y+A +I++L GLE VR+RPGMY T +HL EV+DNS+DEALAGH + V Sbjct: 14 ANSYDAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHCTEIQV 73 Query: 58 ILHADQSLEVIDDGRGMPVDIH----PEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 +H D S+ VID+GRG+P I E A E+ + LHAGGKF+ +Y+ SGGLHG Sbjct: 74 TIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSATEIAMTELHAGGKFNQNSYKVSGGLHG 133 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFENGEK-----------------VQDLQVVGTC 156 VG+S VN LSK ++V VR+ G+V+ I F G V L+V+GT Sbjct: 134 VGVSCVNGLSKWMKVTVRQGGKVHYIEFAQGVPQNRLIETVQGPDGQMVEVSPLRVLGTT 193 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 KR GT VHF DE F + + L+ ++ + L GV I D+ E+ + + Sbjct: 194 DKR--GTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIRLTDQRTGKEEDFAFS 251 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 G+ ++ L F D AV+ ++ W E + + N IP G Sbjct: 252 GGVKGFVEYINKNKTVLHPTIFFAAGEKDGVAVEVSMQWNDAYNEQVL-CFTNNIPQRDG 310 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 GTH+ GLR + + ++ I + V S +D+ + VLSVK+ +P+F+ QTK+ Sbjct: 311 GTHLTGLRAAMTRVINKYIADNEIAKKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKD 370 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLT 392 +L S + V VV A +L + A+++ + +A+ R A K RK + Sbjct: 371 KLVSSEVRLPVEEVVAKALSDFLLETPVDAKIICGKIVEAARAREAARKAREMTRRKGVL 430 Query: 393 SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSS 452 G LPGKLADC +D +ELF+VEGDSAGGSAKQ RDR++QAI+PLKGKILN Sbjct: 431 DGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARF 490 Query: 453 DEVLASQEVHDISVAIGIDPDSDD--LSQLRYGKICILADADSDGLHIATLLCALFVKHF 510 D++L+SQEV + A+G DD L +LRY +I I+ DAD DG HI TLL F + Sbjct: 491 DKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQM 550 Query: 511 RALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQ 550 +++ GHVY+A PPLY+I GKE Y + E L + Sbjct: 551 PEIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLVR 590 Score = 75.4 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Query: 527 YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 R G +V + + L + + QR+KGLGEMNP QL ETT+D RRL Sbjct: 741 VRRGTGDKVREQNVADFHAAMTWLLSEAERGVSRQRYKGLGEMNPEQLWETTMDVTQRRL 800 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 +++ I ED D + L+ E RRN+++ +A I+V Sbjct: 801 LRVQI--EDAIAADQIFTTLMGDD-VEPRRNFIESNALVARNIDV 842 >UniRef50_P50028 DNA gyrase subunit B n=331 Tax=cellular organisms RepID=GYRB_MYCCT Length = 643 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 244/643 (37%), Positives = 376/643 (58%), Gaps = 24/643 (3%) Query: 1 MTQT--YNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRV 55 M + Y+ AI+VL GLE VR+RPGMY +T +HL E++DN++DEALAG+ ++ Sbjct: 1 MAENKKYDESAIQVLEGLEAVRKRPGMYIGSTDNKGLHHLVWEIVDNAIDEALAGYCTQI 60 Query: 56 DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115 DVIL D S+ VID+GRG+P +H + G P E+I LHAGGKF + Y+ SGGLHGVG Sbjct: 61 DVILEKDNSITVIDNGRGIPTGMH-KTGKPTPEVIFSVLHAGGKFDSTAYKSSGGLHGVG 119 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKV-QDLQVVGTCGKRNTGTSVHFWPDETFF 174 SV NALSKR + + RD +++ I F+NG K+ + L + T K TGT+++F PD+T F Sbjct: 120 SSVTNALSKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFINTTYK--TGTTINFLPDDTIF 177 Query: 175 DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLP 234 + +F+ S ++ LK A+L G++IT D I+N + +QDGL +++ E V+ + Sbjct: 178 SNAKFNFSLISERLKESALLNSGLKITLSDLISNRYVEYQFQDGLVEFVKELVDDKTPVT 237 Query: 235 EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 + I N + V+ AL + + E + + N + T+ GGTH+ G + GL+ A+ ++ Sbjct: 238 DIITINNESK-NIIVEIALQYTEDDNE-IILGFANNVKTIDGGTHLVGFKSGLIRAINDY 295 Query: 295 CEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDP--QFAGQTKERLSSRQCAAFVSGVVKD 352 + + IL KL + D+ + +++VK+ + ++ GQTK +L + V +V + Sbjct: 296 AKDQKILKDKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQIVYE 355 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAK-----KVVRKKLTSGPALPGKLADCTAQ 407 WL +N A + E A+++ + R+ A + K V+ K + GKL + Sbjct: 356 FMSYWLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLTPAQGK 415 Query: 408 DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVA 467 EL+LVEGDSAGGSAK RDR +QAI+PL+GK++N+ + ++L ++E+ I A Sbjct: 416 KRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQSIINA 475 Query: 468 IGIDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 IG D D+S + YGKI I+ DAD+DG HI TLL F +H + L+ H VY+ALPPL Sbjct: 476 IGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIIHKKVYIALPPL 535 Query: 527 YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 Y+I + + L +EE+ + KK +QR+KGLGEMN QL +TT+DP R++ Sbjct: 536 YKITFNDKSFIYLWDEEELNKFNKTNTKK--YEIQRYKGLGEMNADQLWQTTMDPKNRKI 593 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 +Q+TI D + M L+ E R+ W+QE + Sbjct: 594 IQVTIS--DGLLAERMFKTLMGDD-VEKRKLWIQENVKFTLED 633 >UniRef50_Q1MQ88 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q1MQ88_LAWIP Length = 799 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 222/618 (35%), Positives = 347/618 (56%), Gaps = 23/618 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDV 57 + + Y AD+I +L GL+ VR RP MY +T +HL EVIDNS+DEA+AG R+DV Sbjct: 8 IPKDYTADSITILEGLQAVRMRPAMYIGSTDTRGLHHLVYEVIDNSIDEAMAGFCTRIDV 67 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 +LH D S+ V D+GRG+PVDIHP+EGVPAV++++ +LHAGGKF N Y+ SGGLHGVG+S Sbjct: 68 VLHLDNSITVRDNGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNDTYKVSGGLHGVGLS 127 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VNALS+++EV + R G + + G +++LQ +G N GT++ F DE F++ Sbjct: 128 CVNALSEQLEVTILRGGYRWKQKYSRGVPLENLQRIGESD--NHGTTIRFKADEEIFETT 185 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 +S L + A L G+EI DE + + + G++ ++ + G L Sbjct: 186 EYSYETLKRRFEELAYLNKGLEIHCTDERTSETHLFKAEGGIHQFVKDINTGESILHSII 245 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 + + +D+AL + G + T ++ N I T +GGTH+ G + L A+ + + Sbjct: 246 SRESIV-EGVMIDFALQYNA-GYKENTLTFANNIRTKEGGTHLAGFKTALTRAINGYIKG 303 Query: 298 RNILPRGVK---LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 + L + +K LS +D+ + VLSVK+ +PQF GQTK +L + + A V G V + Sbjct: 304 QPDLSKKLKGQTLSGDDVREGLTAVLSVKLPNPQFEGQTKTKLGNSEIAGIVGGAVYTSL 363 Query: 355 ILWLNQNVQAAELLAEMAIS---SAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411 + +N + + + AI + + RA + V RK ALPGKLADC +++ Sbjct: 364 DTYFQENPKDIRCIIDKAIDAARAREAARRAKELVRRKGALFDNALPGKLADCQSKNPAE 423 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 +ELF+VEGDSAGGSAKQ R+ QAI+PL+GKILN D++LA++E+ + A+G Sbjct: 424 SELFIVEGDSAGGSAKQGRNPNIQAILPLRGKILNIERTRFDKMLANKEIKALITAMGAG 483 Query: 472 PDSDDLS--QLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 +D +LRY KI I+ DAD DG HI TLL F +++ L++ GH+Y+A PPLYR+ Sbjct: 484 IGEEDTDYQKLRYYKIVIMTDADVDGAHIRTLLLTFFFRNYVGLIERGHLYIAQPPLYRV 543 Query: 530 DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQL 589 K + + L L R + +Q + L+ + + +++ + Sbjct: 544 HNSKSEKFIKDDPSLNDFL--LHRVSSELEIQ------TESGKLLKGSDIITTMKQIESI 595 Query: 590 TIDDEDDQRTDAMMDMLL 607 + +D + ++ + Sbjct: 596 SQRTKDAELAGISENLFM 613 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 4/81 (4%) Query: 551 LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKK 610 L + N+QR+KGLGEMNP QL TT+DP R L+Q+TI+ D + + + L+ + Sbjct: 722 LDEARKGINIQRYKGLGEMNPEQLWVTTMDPQNRTLLQVTIN--DAEEANETFEQLMG-E 778 Query: 611 RSEDRRNWLQEKG-DMAEIEV 630 R E RR +++ ++ ++++ Sbjct: 779 RVEPRREFIERNALNVRDLDI 799 >UniRef50_C3XDF7 DNA gyrase subunit B n=5 Tax=Campylobacterales RepID=C3XDF7_9HELI Length = 775 Score = 646 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 225/643 (34%), Positives = 342/643 (53%), Gaps = 31/643 (4%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 T+ Y AD I+VL GLE VR+RPGMY T +H+ EV+DNS+DEA+AG K + + Sbjct: 5 TKEYLADNIKVLKGLEAVRKRPGMYIGDTNTNGLHHMIYEVVDNSIDEAMAGFCKNIKIT 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L S + DDGRG+PVD+HP E +PA ++L LHAGGKF Y+ SGGLHGVG+SV Sbjct: 65 LTDKGSAIIEDDGRGIPVDMHPTENMPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS ++ + + ++ ++Y FE G +L+++G K GT++ F+PD + Sbjct: 125 VNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGETKK--HGTTIEFFPDPEIMEITE 182 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 F + LT K A L G++I FKDE + ++ + ++ GL+ ++ + F Sbjct: 183 FDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHFEGGLSQFIEDINKKTLITQILSF 242 Query: 239 IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 ++ AL + EG + S+VN I T GGTH G R GL A+ + E Sbjct: 243 EATENEYDSEIEIALAYN-EGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAILNYIEAN 301 Query: 299 -NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 N + VK+ +D+ + +++ K+ DPQF GQTK +L S V + + + Sbjct: 302 ANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQKLTYEKISKF 361 Query: 358 LNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTEL 414 +N A+L+ + + +A+ R A + + S LPGK ADC ++D + E+ Sbjct: 362 FEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQSKDPSECEI 421 Query: 415 FLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP-D 473 +LVEGDSAGGSAKQ RDR +QAI+PL+GKILN + D +L S+E+ ++ A G D Sbjct: 422 YLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMITAFGCGIGD 481 Query: 474 SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 + +LRY KI I+ DAD DG HI TLL F ++F+ LV+ G++Y+A PPLY+ K Sbjct: 482 EFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYFKPLVQGGYIYIAQPPLYKYKRNK 541 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQL-------RETTLDPNT--- 583 + Y ++ L + FKG+G +Q+ R+ D Sbjct: 542 KEVYLKDDKALSDFLIE-----NGIEHFNFKGIGHNELLQILKIIAHYRQLVNDLERRYS 596 Query: 584 -----RRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 R LV+ +D D + ++ L K+ + + E Sbjct: 597 VQYVLRYLVENELDTHDLESLSKNIESYLLSKQYNVLKKHIDE 639 Score = 77.3 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 6/86 (6%) Query: 546 GVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDM 605 +E+ RKKG + R+KGLGEMN +L ETT+ P R LVQ+ I EDD+ D M ++ Sbjct: 695 EEIEEATRKKGD--ISRYKGLGEMNKEELWETTMSPQNRTLVQVKI--EDDEMADEMFNI 750 Query: 606 LLAKKRSEDRRNWLQEKG-DMAEIEV 630 + + E RR ++Q+ D+ ++V Sbjct: 751 FMGDE-VEPRRQYIQKHARDVKNLDV 775 >UniRef50_D1BTM8 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Actinobacteria (class) RepID=D1BTM8_XYLCX Length = 715 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 252/705 (35%), Positives = 366/705 (51%), Gaps = 82/705 (11%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y A + VL GLE VR+RPGMY +T H E+IDNSVDEAL G A ++ V+L Sbjct: 14 KNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGFATKIAVVL 73 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 HAD S+ V DDGRG+PVD+ P+ G+ VE++ +LHAGGKF +Y SGGLHGVG SVV Sbjct: 74 HADSSVTVTDDGRGIPVDVEPKTGLSGVEVVFTKLHAGGKFGGGSYTASGGLHGVGASVV 133 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEK---------------------VQDLQVVGTCGK 158 NALS R++V V R G+ Y + F GE +L VVG + Sbjct: 134 NALSARLDVEVDRGGKTYRMTFHRGEPGTFADGPAGASPESAFSPFIERSELAVVGRAKR 193 Query: 159 RNTGTSVHFWPDETFFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEI---------NN 208 TGT V +W D F S FS L ++ L PG+EIT +DE Sbjct: 194 GVTGTRVRYWADRQIFPKSAVFSYDELVTRVRQTTFLVPGLEITVRDERGLPGTPGADGP 253 Query: 209 TEQRWCYQDGLNDYLAEA-----------VNGLPTLPEKPFIGNFAGD--------TEAV 249 E+ + + G D++ + G T E + + G V Sbjct: 254 HEEMFVHHGGAVDFVDFLAPDAPVTATWTLRGSETFTETVPVLDERGHMSPREVQRDCEV 313 Query: 250 DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE------YRNILPR 303 D AL W G + ++VN+I T +GG+H+ G QGL+ +R+ E + Sbjct: 314 DIALRWGT-GYDTELRTFVNIIATPKGGSHLTGFEQGLVKVVRKQVEANARRLKISAKDG 372 Query: 304 GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWL----N 359 G +L +DI V++V++ +PQF GQTKE L + A V+ V+ L Sbjct: 373 GERLEKDDITAGLTAVVTVRLAEPQFEGQTKEVLGTAPVRAIVARTVEKQLGAILTSTKR 432 Query: 360 QNVQAAELLAEMAISSAQRRMRAAKKV---VRKKLTSGPALPGKLADCTAQDLNRTELFL 416 + A LL + ++ + R+ A K+ RK +LP KLADC + D+ R+ELF+ Sbjct: 433 DDKAQASLLLDKVVAEMRARVSARKQKEISRRKNALETSSLPAKLADCRSDDVERSELFI 492 Query: 417 VEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SD 475 VEGDSA G+AK AR ++QA++P++GKILN + S ++L + E I +G S Sbjct: 493 VEGDSALGTAKLARSSDFQALLPIRGKILNVQKASISDMLRNAECAAIIQVLGAGSGRSF 552 Query: 476 DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID----- 530 DL RYGK+ ++ DAD DG HI TLL LF ++ R LV+ G V+ A+PPL+RI+ Sbjct: 553 DLDAARYGKVVLMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVFAAVPPLHRIEVYGAR 612 Query: 531 -LGKEVYYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPMQLRETTLDPNTRRLV 587 G E Y +E E + L++L R + +QR+KGLGEM+ QL ETT+DP R L Sbjct: 613 GKGNEYIYTYSEAELQATLKRLDRAGKRYKDDIQRYKGLGEMDADQLAETTMDPRHRTLR 672 Query: 588 QLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL---QEKGDMAEIE 629 ++T + + + ++L+ R++++ E D + I+ Sbjct: 673 RVTAQHAEA--AERVFELLMGSD-VAPRKDFIISGAESLDRSRID 714 >UniRef50_Q2GD49 DNA gyrase subunit B n=9 Tax=cellular organisms RepID=Q2GD49_NEOSM Length = 783 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 220/563 (39%), Positives = 323/563 (57%), Gaps = 18/563 (3%) Query: 1 MTQT-YNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRV 55 M+ T Y AD+I+VL GLE VR+RPGMY T + + EV+DNSVDE+LAG+ + Sbjct: 1 MSNTDYTADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAI 60 Query: 56 DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115 +V++ D S+ V D+GRGMP D+H EGV A E+I+ +LHAGGKF +Y+ SGGLHGVG Sbjct: 61 EVVIDVDGSISVEDNGRGMPTDMH-GEGVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVG 119 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 +SVVNALS +++ + RDG+V+ FENGE V+ L V G CG + TGT VHF P + F Sbjct: 120 VSVVNALSDWLKLTIYRDGKVHFAEFENGETVRSLSVTGECGDK-TGTLVHFLPSRSTFK 178 Query: 176 -SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT---EQRWCYQDGLNDYLAEAVNGLP 231 + S S L + + + L PG+ I+ D + + + G +++A Sbjct: 179 NTTEVSFSTLENRFRELSFLNPGLRISLLDMRKGSSTGKVVFFSSGGTEEFVAYLDRSKQ 238 Query: 232 TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAM 291 + P D+ A+D ++ W E + + N I GGTH+ LR + M Sbjct: 239 PIHSTPIRVVGGVDSIAIDVSMQWNDSYYENVL-CFTNNIKQKDGGTHLAALRSAMTRVM 297 Query: 292 REFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV 350 + N++ + V +S ED+ + + +LSVK+ DP+F+ QTKE+L S + + +V Sbjct: 298 HNYIVKENLIKKDKVVVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPVIEKIV 357 Query: 351 KDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQ 407 DA WL +N +A ++A + SA R A K RK LPGKLADC + Sbjct: 358 SDALASWLEENPSSARVIARKVVESALAREAAKKARDLTRRKGGLEITTLPGKLADCQEK 417 Query: 408 DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVA 467 +EL +VEGDSAGGSAKQ RDR+ QA++PL+GKILN + +V+ S E+ ++ A Sbjct: 418 SPELSELLIVEGDSAGGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAA 477 Query: 468 IG--IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 +G I + ++ ++RY KI I+ DAD DGLHI TLL F ++ R +V+ G++Y+A P Sbjct: 478 LGTSIGEEEFNIDKIRYHKIIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYIAQTP 537 Query: 526 LYRIDLGKEVYYALTEEEKEGVL 548 LY++ Y + E L Sbjct: 538 LYKVMRKGADVYLRDDAALEEYL 560 Score = 69.2 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 +QRFKGLGEMNP QL TTLDP+ R + ++TI E+ D M ML+ RR+++ Sbjct: 715 LQRFKGLGEMNPEQLWSTTLDPSNRTIFKVTI--EEAAVADQMCSMLMG-DAVGPRRDFI 771 Query: 620 QEKG-DMAEIEV 630 + + I+V Sbjct: 772 VNNALNASNIDV 783 >UniRef50_Q89B37 DNA gyrase subunit B n=30 Tax=Proteobacteria RepID=GYRB_BUCBP Length = 804 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 202/559 (36%), Positives = 316/559 (56%), Gaps = 14/559 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTD----TTRPNHLGQEVIDNSVDEALAGHAKRVD 56 M TY + I++L GL+ V++RPGMY T +H+ EV+DNS+DEALAG K + Sbjct: 1 MKNTYTSSNIKILKGLDAVKKRPGMYIGNTDDGTGLHHMVFEVVDNSIDEALAGFCKNII 60 Query: 57 VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 V +H D S+ + DDGRG+P DIH EEG+ A E+I+ LHAGGKF N +Y+ SGGLHGVG+ Sbjct: 61 VTIHDDNSISIQDDGRGIPTDIHDEEGISAAEVIMTVLHAGGKFDNTSYKVSGGLHGVGV 120 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALSK++E+ + RD ++Y ++NG L ++G + TGT + FWP+ F + Sbjct: 121 SVVNALSKKLELFIYRDKKIYYQIYKNGYPKNTLSIIGYT--KITGTKIRFWPNLEIFTN 178 Query: 177 -PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 +F+ L+ L+ + L V I D + + + Q GL +++ + Sbjct: 179 VTQFNWEILSKRLRELSFLNSNVSIYLDDAKKHINENFYQQGGLKEFIIYLNKNKKPIHS 238 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 K F + + V+ A+ W G + Y N IP GGTH++G R L M + Sbjct: 239 KIFYFSSKKNNVEVEIAMQWNK-GFQENIYCYTNNIPQQDGGTHLSGFRSALTRTMNNYL 297 Query: 296 EYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 + + + + + +D + ++S+K+ DP+F+ QTK +L S + + + +V + Sbjct: 298 DKEGYIKKNKINIIGDDTREGLTAIISIKINDPKFSSQTKNKLVSSEVKSALESLVNEFL 357 Query: 355 ILWLNQNVQAAELLAEMAISSA---QRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411 + +L +N Q ++ + I S+ RA + +K LPGKL+DC +D Sbjct: 358 MEFLLENPQESKNIVTKIIESSRVRNAARRAREMTRKKGTLDLIGLPGKLSDCQERDPAL 417 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 +E++LVEGDSAGGSAKQAR+R+ QAI+PLKGKILN + +++L+SQEV + A+G Sbjct: 418 SEIYLVEGDSAGGSAKQARNRKNQAILPLKGKILNVEKARYEKMLSSQEVTTLITALGCG 477 Query: 472 PD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 + +LRY +I I+ DAD DG HI TLL F ++ +++ G++Y+A PPLY++ Sbjct: 478 IGKNEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRYMPEIIQRGYLYIAQPPLYKV 537 Query: 530 DLGKEVYYALTEEEKEGVL 548 + Y + E Sbjct: 538 TKNNKTRYIKDKNTMENYK 556 Score = 71.5 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 6/103 (5%) Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 I + Y ++ +L ++ +QR+KGLGEMNP QL +TT++P TRR+++ Sbjct: 707 IKKNNKTYSIKNFQKNFELL--IQNSFKNVLIQRYKGLGEMNPEQLWKTTMNPETRRMLK 764 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 +T+ + D T+ + + L+ E R+ +++ + I++ Sbjct: 765 ITLHNID--TTNKLFNTLMG-DSVEPRKLFIELYALKASNIDI 804 >UniRef50_P94281 DNA gyrase subunit B n=211 Tax=cellular organisms RepID=GYRB_BARBK Length = 692 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 258/647 (39%), Positives = 377/647 (58%), Gaps = 24/647 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 TYNA +I +L GLEPVR RPGMY T +HL E+IDN++DEA+AG+A +D+ L Sbjct: 51 STYNASSIRILEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDITL 110 Query: 60 HADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 ++ L V D+GRG+P++ HP+ +E+I+ LH+GGKF K YQ SGGLHGVGISV Sbjct: 111 DSNNYLTVTDNGRGIPIENHPQIPDKSTLEVIMTHLHSGGKFDGKAYQTSGGLHGVGISV 170 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSP 177 VNALS +EV V R+ ++Y F G L+ +G R GT V F PD F ++ Sbjct: 171 VNALSDDMEVEVARERKLYRQRFSRGIPQSGLEELGDVYNRR-GTRVCFHPDSQIFGENT 229 Query: 178 RFSVSRLTHVLKAKAVLCPGVEIT-------FKDEINNTEQ-RWCYQDGLNDYLAEAVNG 229 F ++ + ++KA L GV+I KD N E+ + + DGL DYL+ ++ Sbjct: 230 AFDPEKIYKIARSKAYLFNGVKIRWNCDPAALKDAKNIPEKDVFYFPDGLKDYLSLSLKN 289 Query: 230 LPTLPEKPFIGNFAG--DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 + + F G +V+WA+ W G+ +SY N IPT +GGTH GLRQ L Sbjct: 290 KHLVTAEIFSGKTQQLSGHGSVEWAIAW--HNGDAYIQSYCNTIPTEEGGTHETGLRQTL 347 Query: 288 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 L ++ + E R ++++D+ +LSV ++DPQF GQTK+RL++ + V Sbjct: 348 LRGLKAYAELIG-NKRASIITSDDVMASTVVMLSVFIKDPQFVGQTKDRLATTEAQRIVE 406 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA--KKVVRKKLTSGPALPGKLADCT 405 ++D F WL + A L I A+ R++ +++ RK LPGKLADC+ Sbjct: 407 NAIRDPFDHWLANSPHEATKLLNWVIERAEERLKRRQDREINRKTAVRKLRLPGKLADCS 466 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 ELF+VEGDSAGGSAKQAR+R QAI+PL+GKILN + +++ +SQ + D+ Sbjct: 467 QNSAAGAELFIVEGDSAGGSAKQARNRTNQAILPLRGKILNVASAAREKMSSSQTIADLI 526 Query: 466 VAIGIDPDSDDLSQ-LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALP 524 +A+G S + LRY +I I+ DAD DG HIA+LL F + L++ GH+Y+A+P Sbjct: 527 LALGCGTRSKYREEDLRYERIIIMTDADVDGAHIASLLITFFFQEIPDLIRAGHLYLAVP 586 Query: 525 PLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTR 584 PLYRI G +V YA + K+ +L+ KGK + RFKGLGEM QL+ETT++P R Sbjct: 587 PLYRISQGGKVAYARDDSHKDELLKTEFTGKGKIEIGRFKGLGEMRAEQLKETTMNPKKR 646 Query: 585 RLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 L++++ID + Q T + L+ K E+R ++QE A +++ Sbjct: 647 TLLRVSIDTFEMQETKETVQNLMGTK-PEERFRFIQESSTFANNLDI 692 >UniRef50_A6DH73 DNA gyrase subunit B n=7 Tax=cellular organisms RepID=A6DH73_9BACT Length = 838 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 210/560 (37%), Positives = 320/560 (57%), Gaps = 15/560 (2%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y AD+I V+ GLE VR+RP MY T +HL EV+DNS+DEALAGH + V LH Sbjct: 11 EYGADSISVMKGLEAVRKRPSMYIGDTNERGLHHLVYEVVDNSIDEALAGHCNNITVKLH 70 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 D S+ V+DDGRG+PV+IH EEG+PAVEL+L +LHAGGKF +Y+ SGGLHGVG+S VN Sbjct: 71 IDNSVTVVDDGRGIPVNIHEEEGIPAVELVLTKLHAGGKFDKDSYKVSGGLHGVGVSCVN 130 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPRF 179 ALS+ +EV V RD ++ I FE G L+ +G TGT V F PD F ++ + Sbjct: 131 ALSEWMEVKVHRDETLHFIRFERGLTETSLKTIGHTN--ITGTEVIFKPDFEIFTETLIY 188 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEI---NNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 L L+ A L PG+ I F DE + + + G+ +++ +G + + Sbjct: 189 KWDILAKRLRELAFLNPGITINFIDERAEDGERRETFYFPGGIGEFVKHLNDGKTVVTD- 247 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 + D D + + +G + SY N I T++GGTH+ G + L ++ + + Sbjct: 248 TVTFSTEKDGVTADVSFQYH-DGFQENIYSYCNNIHTIEGGTHLAGFQTALTASINSYMK 306 Query: 297 YRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 + +S D+ + ++SVK+ +PQF GQTK +L + + + V +V +F Sbjct: 307 NDSKFKNEKNVSGTDVREGLTAIISVKVPEPQFEGQTKTKLGNNEVRSIVRAIVSTSFNE 366 Query: 357 WLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTE 413 +L +N +AA+++ E A+ + + A + + + + G A GKL+ C++++ + E Sbjct: 367 FLEENPKAAKVVVEKALLANRASAAALRARQLIRKDNVLEGFADAGKLSGCSSKNPDECE 426 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD 473 +F+VEGDSAGGSAKQ R+ E QAI+PL+GK++N + D+V A+ E+ + AIG Sbjct: 427 IFIVEGDSAGGSAKQGRNSEVQAILPLRGKLINVEKARIDKVFANTEIGSLISAIGCGVG 486 Query: 474 -SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG 532 D+ ++RY KI I+ DAD DG HI TLL F + + L++ G++YVA PPLY++ Sbjct: 487 NEFDVEKIRYKKIVIMTDADVDGSHIMTLLLTFFFRQMKPLIEAGYIYVAQPPLYKVVRR 546 Query: 533 KEVYYALTEEEKEGVLEQLK 552 K Y + L +L Sbjct: 547 KREEYIKNDAMLNNFLLELG 566 Score = 77.3 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 6/107 (5%) Query: 525 PLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTR 584 P++ + G T + ++ + +QR+KGLGEMN QL ETT+DP R Sbjct: 737 PIFNLTDGNNDTPIFTLIQLFEAIKDEGSQG--LKLQRYKGLGEMNADQLWETTMDPTRR 794 Query: 585 RLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 L+Q+T+ ED + M +L+ E RR+++++ + E++V Sbjct: 795 DLLQVTM--EDAVEAERMFSLLMG-DVVEPRRHFIEKYSTTLKELDV 838 >UniRef50_D2NTW6 Type IIA topoisomerase, B subunit n=10 Tax=Actinomycetales RepID=D2NTW6_9MICC Length = 724 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 248/698 (35%), Positives = 354/698 (50%), Gaps = 74/698 (10%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y A + VL GLE VR+RPGMY +T H E+IDNSVDEALAG + + VI Sbjct: 27 SSNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSIQVI 86 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+ D S+EV DDGRG+P DI P G+ VE++ +LHAGGKF +Y SGGLHGVG SV Sbjct: 87 LYRDGSVEVRDDGRGIPTDIEPRTGLSGVEVVFTKLHAGGKFGGGSYNASGGLHGVGASV 146 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK---------------------VQDLQVVGTCG 157 VNALS R++V V R + Y ++F +G LQ+VG Sbjct: 147 VNALSSRLDVQVDRGSKTYQMSFRHGIPGFFESGRTPKPEDPFTPATEGTDALQIVGRAK 206 Query: 158 KRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI---------N 207 + TGT V +W D F +FS L ++ A L PG+ I +DE Sbjct: 207 RGVTGTRVRYWADPQIFTPDAKFSYEDLAARVRQTAFLIPGLRICIRDERRLPGTPGELE 266 Query: 208 NTEQRWCYQDGLNDYLAEA------------------VNGLPTLPEKPFIGNFAGDTE-A 248 E+ + Y G+++++ +P L E + + Sbjct: 267 PHEEVFQYDGGISEFVEFLAHDERITDTWRFSGSGSFTETVPVLGEDGRSQLTDVERDCE 326 Query: 249 VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC--EYRNILPRGVK 306 VD AL W G E S+VN+I T +GGTH G QGLL MR+ R K Sbjct: 327 VDVALRW-GIGYETTVRSFVNIIATPKGGTHTTGFEQGLLRVMRKHLADNARKYKVGNDK 385 Query: 307 LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ----NV 362 + +D+ VL+V++ +PQF GQTKE L + VS VV DA L Sbjct: 386 IEKDDVLAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDALKARLESTARAEK 445 Query: 363 QAAELLAEMAISSAQRRMRAA---KKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEG 419 A L E +S + R+ A + RK ++P KL DC + ++ +ELF+VEG Sbjct: 446 AQAAALCEKVVSEMKTRVSARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELFIVEG 505 Query: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDLS 478 DSA G+A+ AR YQA++P++GKILNT S +VLA+ E + IG + DL Sbjct: 506 DSALGTARLARSSSYQALLPIRGKILNTQRASVTDVLANAECAALIQVIGAGSGRTFDLD 565 Query: 479 QLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID-----LGK 533 RYGK+ ++ DAD DG HI TLL LF ++ R L++ G VY A+PPL+R++ Sbjct: 566 SARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLIEAGRVYAAVPPLHRVEVVRRGKPN 625 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 E+ Y +E++ +L+ L+ + +QR+KGLGEM+ QL ETT+DP R L ++ I Sbjct: 626 EMVYTYSEKQLHELLDSLQEQGVSYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIRI 685 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ED + + +L+ + R+ ++ + E Sbjct: 686 --EDAEAAERAFSLLMGSE-VAPRKEFIIAGAHQLDTE 720 >UniRef50_A1TI33 DNA gyrase subunit B n=16 Tax=Burkholderiales RepID=A1TI33_ACIAC Length = 877 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 220/606 (36%), Positives = 319/606 (52%), Gaps = 51/606 (8%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTD----TTRPNHLGQEVIDNSVDEALAGHAKRVDV 57 + Y AI++L GLE VR+RPGMY T +HL EV+DNS+DEALAGH + V Sbjct: 36 SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 95 Query: 58 ILHADQSLEVIDDGRGMP----VDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 +H+D S+ V+D+GRG+P +D E A E+ L LHAGGKF+ +Y+ SGGLHG Sbjct: 96 TIHSDNSISVVDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHG 155 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFE------------NGEKVQDLQVVGTCGKRNT 161 VG+S VNALSK + + VRRDG+V+ + F NG +V ++V G KR Sbjct: 156 VGVSCVNALSKMLRLTVRRDGKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGETDKR-- 213 Query: 162 GTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLN 220 GT VHF PD F ++ F L L+ + L GV I KDE E + G+ Sbjct: 214 GTEVHFLPDTEIFKENNDFHYEILAKRLRELSFLNNGVRIRLKDERTGKEDDFSGAGGVM 273 Query: 221 DYLAEAVNGLPTLPEKPF----------IGNFAGDTEAVDWALLWLPEGGELLTESYVNL 270 ++ L F G G V+ A+ W E + + N Sbjct: 274 GFVQFINASKKVLHPNAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNESVL-CFTNN 332 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQF 329 IP GGTH+ GLR + + ++ E + + V++S +D+ + VLSVK+ +P+F Sbjct: 333 IPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKF 392 Query: 330 AGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---V 386 + QTK++L S + A V +V A +L + A++L + +A+ R A K Sbjct: 393 SSQTKDKLVSSEVRAPVEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMT 452 Query: 387 VRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN 446 RK + G LPGKLADC +D +E+++VEGDSAGGSAKQ RDR++QAI+PL+GKILN Sbjct: 453 RRKGVLDGMGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILN 512 Query: 447 TWEVSSDEVLASQEVHDISVAIGIDPDS-------------DDLSQLRYGKICILADADS 493 + +++L S E+ + A+G ++ +LRY +I I+ DAD Sbjct: 513 VEKARYEKLLTSNEILTLITALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDADV 572 Query: 494 DGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKR 553 DG HI TLL F + LV+ GH+Y+A PPLY++ GKE Y + L ++ Sbjct: 573 DGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVAL 632 Query: 554 KKGKPN 559 + Sbjct: 633 RDASVT 638 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 4/100 (4%) Query: 532 GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 G+ + ++ + +K + + QR+KGLGEMNP QL ETT+DP RRL+++ I Sbjct: 781 GERQREEKVSDFRQAMAWLIKEAERTTSRQRYKGLGEMNPEQLWETTMDPEVRRLLRVQI 840 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 ED D + ML+ + E RR++++ A I+V Sbjct: 841 --EDAIEADRVFTMLMGDE-VEPRRDFIETNALRAGNIDV 877 >UniRef50_A0Q197 DNA topoisomerase IV subunit B n=34 Tax=Clostridium RepID=A0Q197_CLONN Length = 652 Score = 635 bits (1639), Expect = e-180, Method: Composition-based stats. Identities = 227/652 (34%), Positives = 357/652 (54%), Gaps = 36/652 (5%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 +Y+ + L LEPVR RPGMY +T +H E++DNS+DE G+ +V +I Sbjct: 9 KNSYDVTDLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNSIDEIANGYGNKVVLI 68 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+ D+S+ ++D+GRG+P IHP + VE++ LH GGKF+NKNY+ SGGLHGVG +V Sbjct: 69 LNKDKSVTIMDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHGVGAAV 128 Query: 119 VNALSKRVEVNVRRDGQVYNIAFEN-----------GEKVQDLQVVGTCGKRNTGTSVHF 167 VNALS+ +EV V + G ++ FE G + L++VG + TGT + F Sbjct: 129 VNALSEWLEVEVYQKGHIHKQRFEYAEDKSLNKKMPGTPIFPLKIVGDTER--TGTKITF 186 Query: 168 WPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT--EQRWCYQDGLNDYLAE 225 PD+ F + F + L+ A G+ + KDE E+ + + GL D++ Sbjct: 187 KPDKEVFSTTEFKFEVIDERLQELAFQNKGITLVIKDERKEEVIEKEYHSERGLLDFIDY 246 Query: 226 AVNGLPTLPEKPFIGNFAGDTEAVDW---ALLWLPEGGELLTESYVNLIPTMQGGTHVNG 282 + + P + + ++ + + SYVN IPT + GTH G Sbjct: 247 LNESKIPIHKDPLLYEGEKEVNSIKVYCEVCMQFTDSSTENIASYVNNIPTTESGTHETG 306 Query: 283 LRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQ 341 + G+ A +E+ + NI+ + +D+ + +L VK+ +P F GQTK +L + + Sbjct: 307 FKTGMTRAFKEWAKKLNIVKEKDKGFEGDDLREGMTAILRVKISNPIFEGQTKTKLGNNE 366 Query: 342 CAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA--QRRMRAAKKVVRKKLTSGPA-LP 398 ++ + W+ N + A + A+S+A + +++ +KK+ G A L Sbjct: 367 AYTVMNELAYIKIGEWIEDNKEIATQIINNAVSAAARREKIKKINDAEKKKVGKGTAPLA 426 Query: 399 GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAS 458 GK++ CT + E +VEGDSAGGSAKQARDR +Q IMP KGKI+NT + + VLAS Sbjct: 427 GKVSICTLKRPEFCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQRLENVLAS 486 Query: 459 QEVHDISVAIGIDP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 +E+ + AIG ++ + L+Y KI IL+DAD DG HI TL ++ R+L+ +G Sbjct: 487 EELKLFNAAIGTGVLENYNEDDLKYDKIIILSDADVDGYHIRTLWITYIYRYMRSLITNG 546 Query: 518 HVYVALPPLYRI----DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573 H+Y+ALPPLY++ G+ YA ++EE +++ + +QR+KGLGEMNP Q Sbjct: 547 HLYIALPPLYKVYKNSKKGEISRYAYSDEELASAKKEIGK---GALIQRYKGLGEMNPDQ 603 Query: 574 LRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 L +TTL+P TR L Q+TI ED + + M+ +L+ E RRN++ + + Sbjct: 604 LWDTTLNPETRTLQQITI--EDAAKAEKMISLLMG-DVVEPRRNYMYKYAEF 652 >UniRef50_Q59526 DNA topoisomerase 4 subunit B n=9 Tax=Bacteria RepID=PARE_MYCGA Length = 633 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 221/639 (34%), Positives = 352/639 (55%), Gaps = 22/639 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDV 57 M YN I+VL GLEPVR+RPGMY +T +HL E+ DN+VDEAL G A +++V Sbjct: 1 MVSNYNEKHIKVLKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEV 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 + D S+ V D+GRG+PV + + V+ + LHAGGKF ++ Y+ SGGLHGVG S Sbjct: 61 VHKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGAS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEK-VQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 VVNALS+++ V V RDG +Y +++G K +Q L+ VG K GT V FWPD T F + Sbjct: 121 VVNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKVGNSTK--HGTIVQFWPDPTIFKN 178 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT-EQRWCYQDGLNDYLAEAVNGLPTLPE 235 +F+ + L + L G++I F DE N Q + +DG+ +YL ++ Sbjct: 179 IQFNPYMIKERLHESSFLFKGLKIVFVDENNPELSQTFIAKDGILEYLKYVNENKKSIS- 237 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 K + VD + E L S+ N + T +GG+H NG +Q +L+ + ++ Sbjct: 238 KIIPFKGDYEKIVVDGCFQYTDNESE-LIISFANSVKTSEGGSHENGFKQAMLETINDYS 296 Query: 296 EYRNIL-PRGVKLSAEDIWDRCAYVLSVKMQDP--QFAGQTKERLSSRQCAAFVSGVVKD 352 + ++ + D+ + + VLSV++ + + GQTK +L +++ V+ ++ Sbjct: 297 KKYKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVAKILTQ 356 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA----LPGKLADCTAQD 408 +L +N A+ L E + + A K K L GKL ++ Sbjct: 357 QLFYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTPAQQKN 416 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 + E+FLVEGDSAGG+AK RD+ +QAI+PL+GK++N + ++L ++E+ I + Sbjct: 417 PLQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILSIISCL 476 Query: 469 GIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 G + ++ L+Y KI I+ DAD+DG HI LL F ++ + L++ G VY+AL PLY Sbjct: 477 GCGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIALAPLY 536 Query: 528 RIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLV 587 +I A ++ + L++L+ K G VQR+KGLGEMN QL TT+DP+ R+L+ Sbjct: 537 KISAKNSNKSAFAWDDYQ--LDELRTKYGSYEVQRYKGLGEMNSEQLWTTTMDPSKRQLI 594 Query: 588 QLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 Q++I + + + + +L+ + R+NW+ E D + Sbjct: 595 QVSIQNA--AQAERKVSILMGDD-ASIRKNWINENVDFS 630 >UniRef50_A8LVU4 DNA gyrase subunit B domain protein n=37 Tax=Actinomycetales RepID=A8LVU4_SALAI Length = 730 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 238/677 (35%), Positives = 363/677 (53%), Gaps = 56/677 (8%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y AD + L GL+ VR+RPGMY +T HL E++DNS DE +AGHA ++V LHA Sbjct: 54 YEADDLTHLEGLDAVRKRPGMYIGSTDSRGVGHLVNEILDNSTDEGVAGHATSIEVTLHA 113 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S++V DDGRG+P D+H + G+ VEL+L RLHAGGKF Y+ SGGLHGVG S VNA Sbjct: 114 DGSVQVDDDGRGIPTDVHAKSGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVNA 173 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQ--------------DLQVVGTCGKR-NTGTSVH 166 LS+R +V VRR G+++ ++F +G LQV+G +R TGTS+ Sbjct: 174 LSRRFDVTVRRGGKIHTMSFRHGVPGTFDGDGPEAPFRAGPGLQVIGAVKRRQRTGTSIR 233 Query: 167 FWPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVEITFKDEI--NNTEQRWCYQDGLNDYL 223 +W D +F+ + L+ A L PGV +D E+R+ Y +GL D + Sbjct: 234 YWYDPRYFEVGATLDAEAVRMKLRNTAFLVPGVSYLLRDHTGAEPVEERFHYPNGLTDMV 293 Query: 224 AEA-------VNGLPTLPEKPFIGNFAGD-----------TEAVDWALLWLPEGGELLTE 265 V+G+ + + A D V+ A W G E E Sbjct: 294 DFLAPAGDRPVSGILVVSGEGTYRENAADANGVMQANVPRRAEVELAFRWGT-GYERTVE 352 Query: 266 SYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY-RNILP-RGVKLSAEDIWDRCAYVLSVK 323 + N I GGTH G + L + + R +L + + +DI + V+ V+ Sbjct: 353 CFTNTIRNAHGGTHRKGFERALTRTLADAVRNARGLLKAKEDPPTLDDILEGMTAVVHVR 412 Query: 324 MQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN--VQAAELLAEMAISSAQRRM- 380 + +PQF QTK+ LS+ + +V+ +WL + A + + +A+ R+ Sbjct: 413 IPEPQFTSQTKDELSTAGITKVLQRLVEQHLKVWLEERRTKAEARTVLQKIADAARVRLT 472 Query: 381 --RAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIM 438 + RK G ++P KL DC + + R+E+F+VEGDSA G+A+ AR EYQA++ Sbjct: 473 QKQQKDAARRKTALEGASMPAKLVDCRSTGVARSEMFIVEGDSALGTARLARSSEYQALL 532 Query: 439 PLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLH 497 P++GKILN + + +VL + E I +G + DLS +RYG++ I+ADAD DG H Sbjct: 533 PIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLSAVRYGRVLIMADADVDGAH 592 Query: 498 IATLLCALFVKHFRALVKHGHVYVALPPLYRID---LGKEVYYALTEEEKEGVLEQLKRK 554 I TLL LF ++ R L++ G +Y A+PPL++I + Y T+EE E + +L++ Sbjct: 593 IRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTVYTYTQEEMEATVRRLEKA 652 Query: 555 KGK--PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRS 612 + + RFKGLGEMN +L ETT++P R + ++T+ ED + + ++++L+ ++ Sbjct: 653 GKQIVTPIPRFKGLGEMNADELWETTMNPAGRAVRRITL--EDAEAAEQVLELLMG-EKV 709 Query: 613 EDRRNWLQEKGDMAEIE 629 E RRNWL D + E Sbjct: 710 EPRRNWLIASADRVDRE 726 >UniRef50_Q83G36 DNA gyrase subunit B-like protein n=2 Tax=Tropheryma whipplei RepID=Q83G36_TROWT Length = 662 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 234/658 (35%), Positives = 341/658 (51%), Gaps = 41/658 (6%) Query: 1 MTQT--YNADAIEVLTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRV 55 M+ YNAD I +L GL VR+RPGMY +T + H E+IDNSVDE LAG V Sbjct: 1 MSSNTDYNADDIALLEGLAAVRKRPGMYIGSTDNHGLAHCLWEIIDNSVDEVLAGFGNVV 60 Query: 56 DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115 ++ LH D S V D GRG+PVDI + G+ VEL+ +LHAGGKF Y SGGLHGVG Sbjct: 61 NITLHGDNSFSVQDFGRGIPVDIESKTGLTGVELVFTKLHAGGKFGTGAYFTSGGLHGVG 120 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 SVVNALS+++ V V RDG + + F N + L+ TGT V FWPD F Sbjct: 121 ASVVNALSEKLSVEVDRDGMTWVMEFRN-QVTSGLRSKCKIASNVTGTRVRFWPDPLIFG 179 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEA--------- 226 S + L A L PG+ + +D + + ++ G ++ Sbjct: 180 SAEICIESLHQRAMQTAFLVPGLRVNIEDRVLGKSSSYLFEGGCKQFVEHLSAGELITDV 239 Query: 227 --VNGLPTLPEKPFIGNFAGDTE--------AVDWALLWLPEGGELLTESYVNLIPTMQG 276 + G + E + G+ VD AL W + E S+VN+I T +G Sbjct: 240 LCIRGKGSFSEAVPVLKETGNLVISSVERVCDVDIALAWRND-FETHINSFVNVIETPKG 298 Query: 277 GTHVNGLRQGLLDAMREFC--EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK 334 GTH +G Q LL +R + R + + ED++ V+SVK+ +PQF GQTK Sbjct: 299 GTHYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPEPQFEGQTK 358 Query: 335 ERLSSRQCAAFVSGVVKDAFILWLN--QNVQAAELLAEMAISSAQRRMRA---AKKVVRK 389 E L + V+ +V D + + E ++ R+ A + RK Sbjct: 359 EVLGTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVAQMHFRLAARASRETQRRK 418 Query: 390 KLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWE 449 +LP KL DC + D+N +ELF+VEGDSA G+A++AR+ EYQA++P++GKILN + Sbjct: 419 NALETSSLPAKLVDCRSNDVNESELFIVEGDSALGTARRARNSEYQALLPIRGKILNVQK 478 Query: 450 VSSDEVLASQEVHDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVK 508 S + LA+ E I IG + D++Q RYGK+ I++DAD DG HI LL LF + Sbjct: 479 ASVADALANAECASIIQVIGAGSGSNFDIAQARYGKVIIMSDADVDGAHIRILLLTLFFR 538 Query: 509 HFRALVKHGHVYVALPPL--YRIDLGKEVYYALTEEEKEGVLEQLKRKK--GKPNVQRFK 564 + + ++ G V+ ALPPL + E Y ++ E E VL +LK++ + +QR+K Sbjct: 539 YMQPMISSGRVFSALPPLHQVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHREPIQRYK 598 Query: 565 GLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 GLGEM+ QL ETT+D + R L+++ + D Q+ + +L+ RR ++ Sbjct: 599 GLGEMDADQLAETTMDRSKRTLLRIRMS--DAQQASDIFALLMGND-VAPRREFIANS 653 >UniRef50_C6PY14 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY14_9CLOT Length = 653 Score = 631 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 229/654 (35%), Positives = 355/654 (54%), Gaps = 38/654 (5%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y+ A+ L LEPVR RPGMY +T +H E++DNS+DE G + VIL Sbjct: 9 QVYDVTALTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGFGDKAIVIL 68 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + D+S+ +ID+GRG+P IHP + VE++ LH GGKF+N Y+ SGGLHGVG +VV Sbjct: 69 NKDKSVTIIDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNDVYKTSGGLHGVGAAVV 128 Query: 120 NALSKRVEVNVRRDGQVYNIAFEN-----------GEKVQDLQVVGTCGKRNTGTSVHFW 168 NALSK V V ++++G +Y FE G V L++ G + TGT V F Sbjct: 129 NALSKWVVVEIKQNGHIYTQRFEYAYDKSLKRDMPGTPVTALKIAGNT--KETGTKVTFL 186 Query: 169 PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT--EQRWCYQDGLNDYLAEA 226 PD+ F + F + L+ A G+ + D+ + E+ + + GL D++ Sbjct: 187 PDKDVFSNTEFKFDVIDERLQELAFQNKGITLKIIDKREDEVVEKEYHSERGLLDFIEYL 246 Query: 227 VNGLPTLPEKPFIGNFAGDTEAV----DWALLWLPEGGELLTESYVNLIPTMQGGTHVNG 282 L P + + + + + + E SYVN IPT + GTH +G Sbjct: 247 NESKTALHTPPILFEGEREVNGISMYSEVCVQFTDSTTE-YIASYVNNIPTTESGTHESG 305 Query: 283 LRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQ 341 + G+ A +E+ + N+L + + +D+ + ++ +K+ +P F GQTK +L + + Sbjct: 306 FKAGMTRAFKEWTKKLNLLKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTKTKLGNTE 365 Query: 342 CAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA--QRRMRAAKKVVRKKLTSGPA-LP 398 ++ + F W+ N A + AI +A + +++ + +KK+ G A L Sbjct: 366 AYTMMNDLAYTKFSEWIEDNKDTASSIINNAIDAAARREKIKKINEAEKKKIGKGTAPLA 425 Query: 399 GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAS 458 GK+A CT +D + +E +VEGDSAGGSAKQARDR +Q IMP KGKI+NT + + VL S Sbjct: 426 GKIAVCTLKDPSFSEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVLGS 485 Query: 459 QEVHDISVAIGIDP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 +E+ + AIG + L+Y KI I++DAD DG HI TL ++ R ++ +G Sbjct: 486 EELKIFNTAIGTGVLQNYKEQDLKYNKIIIMSDADVDGYHIRTLWMTYIYRYMRQIISNG 545 Query: 518 HVYVALPPLYRIDLGKE----VYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573 H+Y+ALPPLY++ + V YA ++EE E +Q+ + +QR+KGLGEMNP Q Sbjct: 546 HLYIALPPLYKVYKQNKNKEIVRYAYSDEELEKEKKQVGK---GALIQRYKGLGEMNPDQ 602 Query: 574 LRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 L ETTL+P TR L Q+TI ED + + M+ +L+ R+N++ + + Sbjct: 603 LWETTLNPETRTLQQITI--EDAAKAEKMVSLLMG-DVVAPRKNYMYKYAVFND 653 >UniRef50_B3TAI0 Putative DNA gyrase B n=1 Tax=uncultured marine microorganism HF4000_APKG8D23 RepID=B3TAI0_9ZZZZ Length = 646 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 212/643 (32%), Positives = 344/643 (53%), Gaps = 44/643 (6%) Query: 28 DTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAV 87 D + +H EV+DN+VDE LAG+ V+V L + S+ VID GRG+PV PEEGV A Sbjct: 8 DGSALHHCIWEVVDNAVDEHLAGYNSTVEVNLEKNGSVTVIDHGRGIPVGKIPEEGVSAA 67 Query: 88 ELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKV 147 E+I+ +LHAGGKF NK Y+ +GGLHGVG+S VNA+S+++ + + RDG+V+ F G++ Sbjct: 68 EVIMTKLHAGGKFDNKAYKVAGGLHGVGVSAVNAVSEKLSMTIHRDGKVWTQNFVRGKRK 127 Query: 148 QDLQVVGTCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 206 L+ G T +++F PD F D F ++ L+ A L G++I +D Sbjct: 128 AVLKATGKTTSTGT--TINFKPDMKIFSDVTDFDFEQINTRLRRTAFLNAGLQIWLRDFR 185 Query: 207 --NNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEA----VDWALLWLPEGG 260 + E Y GL Y+ + ++ + D + V+ AL W Sbjct: 186 GQDTVEIEHKYDGGLRQYVESMNEKKKAIHDEVIHILGSKDGDKGEVLVEVALQWTDAYS 245 Query: 261 ELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVL 320 E + N+I GG H++GL+ L + + + R +L LS +D+ + + V+ Sbjct: 246 ES-IHCFTNIIHNTDGGAHLSGLKSSLTRTVNSYAQSRKLLKNVSSLSGDDVREGLSAVI 304 Query: 321 SVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM 380 S+K DP F QTK +L + + A V +V D + +N A + E + +++ R Sbjct: 305 SIKHPDPSFNAQTKAKLVTSEVAGIVEQIVNDKLGDYFEENPAVARSIVEKVVLASKARE 364 Query: 381 RAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAI 437 A K RK + G LPG+LADC ++D EL++VEG+SAGGSAK ARDR QA+ Sbjct: 365 AARKARDLTRRKGVLEGGGLPGQLADCQSRDPAECELYIVEGESAGGSAKTARDRRTQAV 424 Query: 438 MPLKGKILNTWEV--SSDEVLASQEVHDISVAIGIDPDS-------DDLSQLRYGKICIL 488 +PL+GKILN + +V +++++ + A+G + D +LRYGKI I+ Sbjct: 425 LPLRGKILNVERQQRNLTKVFSNEQIQRMIRALGAGVGNEEEDEGAFDPEKLRYGKIIIM 484 Query: 489 ADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVL 548 DAD DG HI TL+ + R + +G+VY+A PPL+ + GK + TE++++ V+ Sbjct: 485 TDADIDGAHIRTLILTFMWRFMRRAIANGNVYIAAPPLFSVSRGKHTEWVHTEKDRDAVV 544 Query: 549 EQLKRKKGKPNV--QRFKGLGEMNPMQLRETTLDPNTRRLVQLTI--------------- 591 ++L+++ + QR+KGLGEMNP QL +TT+DP +R + Q+ + Sbjct: 545 KRLQKEAPTAKINVQRYKGLGEMNPEQLWQTTMDPESRTMFQVKMPEKPSEVRFTDVGEQ 604 Query: 592 ---DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE-IEV 630 ++ + + + +L+ + DRR ++++ ++V Sbjct: 605 MSDEEAVEGEVNELFSILMGED-VPDRRAFIEKNASKVTALDV 646 >UniRef50_Q9ZLX3 DNA gyrase subunit B n=50 Tax=Epsilonproteobacteria RepID=GYRB_HELPJ Length = 773 Score = 629 bits (1623), Expect = e-179, Method: Composition-based stats. Identities = 232/617 (37%), Positives = 352/617 (57%), Gaps = 26/617 (4%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y + +I+VL GLE VR+RPGMY T +H+ EV+DN+VDE++AG +++ L Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + S V D+GRG+PVDIHP E +PA ++L LHAGGKF N Y+ SGGLHGVG+SVV Sbjct: 62 TEEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVV 121 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC-GKRNTGTSVHFWPDETFFDSPR 178 NALSKR+ + ++++GQ+Y FE G + +L+++G + +GT++ F+PDE+ + Sbjct: 122 NALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVVE 181 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 F L K A L G++I+FK+E ++ + Y+DGL ++ ++ P F Sbjct: 182 FQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYKDGLKQFVKDSAKKELLTPIIAF 241 Query: 239 IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 +++ AL + + E T S+VN I T +GGTH G + GL A+ ++ + Sbjct: 242 KSMDEETRTSIEVALAYADDYNE-NTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYID-N 299 Query: 299 NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWL 358 NI + + +EDI + V+S+KM +P F GQTK +L S A VS +V D +L Sbjct: 300 NIKTKESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFL 359 Query: 359 NQNVQAAELL--AEMAISSAQRRMRAAKKVVRKK-LTSGPALPGKLADCTAQDLNRTELF 415 +N A+++ + + A+ + A+++ RKK S LPGKLADC ++D +E+F Sbjct: 360 EENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESEIF 419 Query: 416 LVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS- 474 LVEGDSAGGSAKQ RDR +QAI+PLKGKILN + ++L S+E+ ++ A G Sbjct: 420 LVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQES 479 Query: 475 DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKE 534 D+ +LRY KI I+ DAD DG HI TLL F ++ R L++ GHV++A PLY+ GK Sbjct: 480 FDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYKKGKT 539 Query: 535 VYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQL-------RETTLDPNTR--- 584 Y + L + +G+G+ + M L R T L+ R Sbjct: 540 EIYLKDSVALDHFLIEHGINSVD-----IEGIGKNDLMNLLKVARHYRYTLLELEKRYNL 594 Query: 585 -RLVQLTIDDEDDQRTD 600 +++ I+ +D D Sbjct: 595 LEVLRFLIETKDALSLD 611 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 5/95 (5%) Query: 538 ALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDD 596 L ++ LE+++ K N+QR+KGLGEMNP L ETT+ R L++L I ED Sbjct: 682 FLENKDILAFLEEVENYAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKI--EDL 739 Query: 597 QRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 ++TDA+ + + + E RR ++Q D+ +++V Sbjct: 740 EKTDAVFSLCMGDE-VEPRRAFIQAHAKDVKQLDV 773 >UniRef50_D2R8B1 DNA gyrase, B subunit n=80 Tax=Bacteria RepID=D2R8B1_9PLAN Length = 830 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 221/574 (38%), Positives = 328/574 (57%), Gaps = 18/574 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + YNA++I+ L+ LE VR RP MY +HL EV+DNS+DEA+AGHAK+V VI+ Sbjct: 12 KDYNAESIKHLSDLEHVRLRPAMYIGDITARGLHHLVYEVVDNSIDEAMAGHAKQVSVIV 71 Query: 60 HADQSLEVIDDGRGMPVDIHPEEG------VPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 + D S+ V DDGRG+PV+ H + V +E ++ +L GGKF +Y+ SGGLHG Sbjct: 72 NTDGSVTVEDDGRGIPVERHEQLSASEGRDVSTLEGVMTKLKFGGKFDKDSYKTSGGLHG 131 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF 173 VG++VVN LS+ EV V R G++Y ++E G ++ +G+ + TGT F PD T Sbjct: 132 VGVTVVNFLSQWAEVQVCRGGKIYQQSYETGAPTGPVREIGSTDR--TGTKTTFKPDGTI 189 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 F + ++ L L+ A L GV I FKDE N +CY+ G+ +++ + Sbjct: 190 FQTTKYQYDILHKRLQELAFLNSGVRIKFKDERNGEGAEFCYERGIIEFIEHLNRASDVI 249 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 DT + AL + E E L SYVN I T++GGTHV+G R L + Sbjct: 250 HSDVIYLRGEVDTVGFEIALQYSAEYTENLH-SYVNNIHTVEGGTHVSGFRSALTRTLNA 308 Query: 294 FCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 + + + + + + +D + V+SV++ PQF GQTK +L + + V+G V + Sbjct: 309 YGKKEGLF-KDITPTGDDFREGLTAVISVRVAHPQFEGQTKTKLGNGEVDGIVAGAVNEF 367 Query: 354 FILWLNQNVQAAELLAEMAISSAQRRMRAAKK----VVRKKLTSGPALPGKLADCTAQDL 409 +L +N + A+++ + +A+ R A K RK G LPGKL DC ++++ Sbjct: 368 LAKFLEENPKTAKIIVRKGVLAAEAREAARKAKEVLRSRKNALGGGGLPGKLRDCISKEM 427 Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 R EL+LVEGDSAGGSA+ R R++QAI+PL+GKI+N ++ D+VLA++EV + AIG Sbjct: 428 ERCELYLVEGDSAGGSAEGGRLRDFQAILPLRGKIINAYKSREDKVLANEEVQSMIQAIG 487 Query: 470 IDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR 528 ++ DL++ RY KI I+ DAD DG HI TLL F + +LV +GHVYVA PPL+R Sbjct: 488 TGIGAEIDLTKRRYNKIIIMTDADVDGSHIRTLLLCFFYRQMYSLVANGHVYVAQPPLFR 547 Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQR 562 + KE YY T+EE L + ++Q Sbjct: 548 VRSKKETYYVQTDEEMRSQLLSRGIGDTELDLQN 581 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 525 PLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTR 584 P Y + G+ + ++ +K +V RFKGLGEMN +LR+TTLDP R Sbjct: 729 PRYILRRGENEIPLKELRTLVASIREMGQKG--MSVTRFKGLGEMNAEELRDTTLDPKNR 786 Query: 585 RLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 LVQ+++ D D M +L+ ++ E RR +++ ++V Sbjct: 787 TLVQVSMRDAGA--ADDMFRVLMG-EKVEPRRQFIETHALEVRNLDV 830 >UniRef50_P78016 DNA topoisomerase 4 subunit B n=3 Tax=Mycoplasma RepID=PARE_MYCPN Length = 635 Score = 623 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 222/641 (34%), Positives = 355/641 (55%), Gaps = 24/641 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDV 57 M Y+ I++L GL+ V++RPGMY +T +HL E++DN VDE L+G A + V Sbjct: 1 MKNNYSEANIKILKGLDAVKKRPGMYIGSTDSRGFHHLLWEILDNCVDEVLSGFANTIAV 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 +LHA+ + V D+GRG+P + H + + ++ + LHAGGKF N +Y+ +GGLHGVG S Sbjct: 61 VLHAENQITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGAS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQ-DLQVVGTCGKRNTGTSVHFWPDETFFDS 176 VVNALS +++V V+R G+VY +ENG K++ +G GTSV F PD F Sbjct: 121 VVNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKK 180 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY-QDGLNDYLAEAVNGLPTLPE 235 F + LK A L +++TF DE + E+ + + G++ YL E + + Sbjct: 181 IHFDSELIRARLKELAFLFKKLQLTFVDETGSGEKEVFFTEAGISQYLDELNADSKQIAQ 240 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 K F+ D E A+ +G + S+ N I T +GG+H RQ + D + +C Sbjct: 241 KIFVSGTEDDIELE--AVFQFIDGEDEKLLSFANSIRTSEGGSHEASFRQSVGDVINNYC 298 Query: 296 EYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDP--QFAGQTKERLSSRQCAAFVSGVVKD 352 N L R A +I + ++ V + + F GQTK +L S++ A V + + Sbjct: 299 RKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAVVQKLTQK 358 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA----LPGKLADCTAQD 408 F +L +N A+L+ E + + R ++ KK S P L GKLA ++ Sbjct: 359 HFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGKLAPAQSKK 418 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDE-VLASQEVHDISVA 467 + ELF+VEGDSAGG+AK RDR QAI+PL+GK+LN ++++ + + ++E+ + Sbjct: 419 VAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEELLTLIFC 478 Query: 468 IGIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 IG + + +Y KI I+ DAD+DG HI LL F ++ + L++ GH+Y+ALPPL Sbjct: 479 IGTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHIYLALPPL 538 Query: 527 YRID-LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 Y+ + K+ Y TE+E E + NVQR+KGLGEMN QL ETT++P TR+ Sbjct: 539 YKFEGRDKKARYLWTEQELEQYRAK----HSHFNVQRYKGLGEMNADQLWETTMNPMTRK 594 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 L+Q+ +D+ + + +++ + ++E R++W++ + + Sbjct: 595 LIQVKLDNF--IQAEKQINVFMG-DKTELRKSWIEANINFS 632 >UniRef50_A1SCM1 DNA gyrase subunit B n=28 Tax=Actinomycetales RepID=A1SCM1_NOCSJ Length = 711 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 239/684 (34%), Positives = 360/684 (52%), Gaps = 62/684 (9%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y+A AI+VL GLE VR+RPGMY +T +HL E++DN+VDEALAG+ R+ + L A Sbjct: 32 YDASAIQVLEGLEAVRKRPGMYIGSTGERGLHHLIWEIVDNAVDEALAGYCDRIVLTLLA 91 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D + V D+GRG+P P + +PA+ L L LHAGGKF Y+ SGGLHGVG+SVVNA Sbjct: 92 DGGIRVEDNGRGIPTGTAPGQELPALTLALTVLHAGGKFGGGGYKVSGGLHGVGVSVVNA 151 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN-TGTSVHFWPDETFFDSPRFS 180 LS R+ V+ G ++ +F G +L+ V TGT++ +W F++ S Sbjct: 152 LSTRLVAEVKNRGHLWRQSFSAGVPDGELEQVRPVEPDEGTGTTITYWASPDIFETTTHS 211 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNT------------------------------- 209 + +T ++ A L G+EI +DE Sbjct: 212 LETITSRIREYAFLNKGLEIVVRDERPAAAEIVDAVEDDTVDPDHRGGIDDAGHDAIKRG 271 Query: 210 -----EQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFA-----GDTEAVDWALLWLPEG 259 EQ + Y GL DY+ + +++ A+ W Sbjct: 272 EGGALEQIFKYDRGLIDYVEHLNRRKTAANPTVIAFEAETPESVENHMSLEVAMQWNTSF 331 Query: 260 GELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV-KLSAEDIWDRCAY 318 E + ++ N I T +GGTH G R L + + ++ + ++S +DI + Sbjct: 332 SESVH-TFANTINTHEGGTHEEGFRAALTSLVNNWGFEWGLMKKPEDRVSGDDIREGLTA 390 Query: 319 VLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQR 378 ++S+K+ +PQF GQTK +L + + FV +V D WL QN + A ++A Sbjct: 391 IISIKLGEPQFEGQTKTKLGNTEAKGFVQRLVNDQLGAWLEQNPAEGRDIVRKAQAAASA 450 Query: 379 RMRAAK----KVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREY 434 R+ A K RK L G LPGKL+DC + + E+F+VEGDSAGGSA+Q RD Sbjct: 451 RIAARKARDLARSRKGLLGGGGLPGKLSDCQSTNPAECEVFIVEGDSAGGSARQGRDPRI 510 Query: 435 QAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP-DSDDLSQLRYGKICILADADS 493 QAI+P++GKILN + D+VL++QEV I A+G D D+ +LRY K+ ++ADAD Sbjct: 511 QAILPIRGKILNVEKARIDKVLSNQEVQSIISALGTGIQDEFDIEKLRYHKVVLMADADV 570 Query: 494 DGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK--EVYYALTEEEKEGVL--- 548 DG HI TLL L + + L++ G+VY+A PPLYR+ K E + ++ E++ +L Sbjct: 571 DGHHINTLLLTLLFRFMKPLIEGGYVYMAQPPLYRLRWNKPHEHEFVYSDAERDALLRAG 630 Query: 549 -EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLL 607 E K+ + VQR+KGLGEMN +L ETT+DP R ++Q+T+DD D + +L+ Sbjct: 631 QEAGKKLPKENPVQRYKGLGEMNAKELWETTMDPEQRLMLQVTLDDAAH--ADEIFSILM 688 Query: 608 AKKRSEDRRNWLQEKGDMAE-IEV 630 + E RR+++Q +++ Sbjct: 689 GED-VEQRRSFIQRNAKDVRFLDI 711 >UniRef50_D0RQH0 DNA gyrase subunit B n=2 Tax=Bacteria RepID=D0RQH0_9RICK Length = 834 Score = 621 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 237/640 (37%), Positives = 350/640 (54%), Gaps = 40/640 (6%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTD----TTRPNHLGQEVIDNSVDEALAGHAKRVDV 57 Y AD+I+VL GL+ VR+RPGMY T +H+ EV+DN++DEALAGH + V Sbjct: 8 KTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDTIVV 67 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 ++ D S+ V D+GRG+PV+IH E + A E+I+ +LHAGGKF +K Y+ SGGLHGVG+S Sbjct: 68 KINKDNSVSVSDNGRGIPVEIHKTEKISAAEVIMTQLHAGGKFDHKTYKVSGGLHGVGVS 127 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALSK ++V++ RDG+ Y + FENG L+ +G + GT+V F P F Sbjct: 128 VVNALSKSLKVDIFRDGKKYFVEFENGITKAPLKEIGKSDLK--GTNVTFLPSSEIFTDT 185 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ--RWCYQDGLNDYLAEAVNGLPTLP- 234 +F++S L LK A L G+ I DE + + + G+ +++ + + Sbjct: 186 KFNLSILEKRLKELAYLNKGLNIQLSDERKEKAKILNFKFDGGIKEFVKDLNKLKNKIKN 245 Query: 235 -------EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 E+P + V+ ALLW E + + N IP GGTH+ G R + Sbjct: 246 EDSQFTLEEPLYFQSNKNDIDVECALLWNSSYNENVL-CFTNNIPQKDGGTHLLGFRNSI 304 Query: 288 LDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 + ++ +L + V + +D+ + VLSVK+ DP+F+ QTKE+L S + V Sbjct: 305 TRLINKYANDFGLLKKDKVTIVGDDVREGLICVLSVKVPDPKFSSQTKEKLVSSEVRPVV 364 Query: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM---RAAKKVVRKKLTSGPALPGKLAD 403 + + LW +QN + A+ + I +A R +A + V RK +LPGKLAD Sbjct: 365 ETITNEKISLWFDQNPKIAKTIIGKIIQAAVAREVARKARESVRRKNAIDITSLPGKLAD 424 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW----------EVSSD 453 C + D+N+TELF+VEGDSAGGSAKQAR+RE+QA++PL+GKILNT+ + Sbjct: 425 CQSNDINKTELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTFVEAKNNSPDVKKVFS 484 Query: 454 EVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALF-VKHFRA 512 ++L+S E+ + AIG + +L +LRYGKI I+ DAD DG HI TLL F K F Sbjct: 485 KMLSSNEIVTLINAIGTGVEPFELEKLRYGKIVIMTDADVDGSHIRTLLLTFFNNKPFNE 544 Query: 513 LVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGV-LEQLKRKKGKPNVQRFKGLGEMNP 571 L+K GH+Y+A PPLY+I GK V Y E + E + +E +K + K Sbjct: 545 LIKKGHIYIAQPPLYKIKSGKTVNYLKNENDLEKLAIENSLKKIESVTFKNNKKFNYDK- 603 Query: 572 MQLRETTLDPNTRRLVQLTIDDEDDQRTDAM-MDMLLAKK 610 T + + + D D + + + + KK Sbjct: 604 -----TFIVQSYELYKLIKSIDGDKEILEQLSIVGAFTKK 638 Score = 58.4 bits (140), Expect = 8e-07, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 8/83 (9%) Query: 555 KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD------EDDQRTDAMMDMLLA 608 K ++QRFKGLGEMNP +L ETTL+P L+++ + E D + L+ Sbjct: 753 KKNLSLQRFKGLGEMNPDELWETTLNPENNSLLKVNYSELNGEISEPSSSDDEIFFTLMG 812 Query: 609 KKRSEDRRNWLQEKG-DMAEIEV 630 + S+ R+N++ +++ +++ Sbjct: 813 EDVSK-RKNFINSNAINVSNLDI 834 >UniRef50_C5B4P3 DNA gyrase, subunit B n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4P3_METEA Length = 816 Score = 620 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 223/575 (38%), Positives = 317/575 (55%), Gaps = 29/575 (5%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTD----TTRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y+A +I+VL GLE VR+RPGMY T +H+ EV+DN +DE LAGHA RV V L Sbjct: 9 AYDASSIQVLEGLEAVRKRPGMYIGDTNDGTGFHHMVWEVVDNGIDECLAGHADRVTVTL 68 Query: 60 HADQSLEVIDDGRGMPVDIHPEE-GVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 +AD S+ V+D+GRG+PVD HP+ G A E+I+ LHAGGKF +Y+ SGGLHGVG+SV Sbjct: 69 NADGSVTVVDNGRGIPVDPHPKYPGKSAAEIIMTVLHAGGKFDQNSYKVSGGLHGVGVSV 128 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDE-TFFDSP 177 VNALS +E+ + R G+ + +AFE+GE ++ VG R GTSV F P TF Sbjct: 129 VNALSSLLELTIWRGGREHYMAFEHGEPAGPIRDVGDAKGRR-GTSVTFTPSLRTFTGVV 187 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEI--NNTEQRWCYQDGLNDYLAE--AVNGLPTL 233 FS + + L+ A L GV I F D + Y+ G+ +Y+ G + Sbjct: 188 EFSAAVIERRLRELAFLNSGVRIVFHDRRVKDVDPVEMYYEGGVGEYVGYIDRTAGRDRV 247 Query: 234 PEKPFIGNFAGDTE----------AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGL 283 +P + E ++ AL W E + + N IP GGTHV G Sbjct: 248 IARPIVVRTERSVEVEGNPGPIPVGIEVALQWNDSTTESVLP-FTNNIPQTDGGTHVQGF 306 Query: 284 RQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCA 343 + L + + + RN L LS +D+ + ++SVK+ DP+FA QTK +L S + + Sbjct: 307 KTALTRSFMAYVD-RNPLKTKTGLSGDDLREGLTAIVSVKLPDPKFASQTKAKLVSNEVS 365 Query: 344 AFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK--VVRKK--LTSGPALPG 399 V V +A WL++N A + + A+ +A R A + +VR+K L +LPG Sbjct: 366 GPVQSAVGEALATWLDENPADARKVIDKAVEAAAAREAAKRAREMVRRKTVLDDITSLPG 425 Query: 400 KLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQ 459 KLADC +D +++E+ +VEGDSAGGSAKQ RD E+QA++PL+GKILNT D ++ + Sbjct: 426 KLADCRERDPSKSEILIVEGDSAGGSAKQGRDSEFQAVLPLRGKILNTETARLDRIMKNA 485 Query: 460 EVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 V + A+G D ++RY +I I+ DAD DG HI TLL A F +H L+ G Sbjct: 486 AVGTLVKALGCGIGKGSHDPDKVRYHRIIIMTDADVDGAHIRTLLLAFFFRHMPELINRG 545 Query: 518 HVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK 552 VY A PPLY I+ + + + L +L Sbjct: 546 FVYKAEPPLYSIEKKGRKTFLRDDVALDRELLRLG 580 Score = 67.3 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 3/71 (4%) Query: 559 NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 + R+KGLGEM QL ETTLDP R +VQ+ ++D + R +D L+ K SE R++ Sbjct: 748 TIGRYKGLGEMTAQQLSETTLDPTARSIVQIRVEDAEAARAK--VDQLMGSK-SEPRKHL 804 Query: 619 LQEKGDMAEIE 629 L+ +G + E++ Sbjct: 805 LETRGHLVEVD 815 >UniRef50_A6G5S5 DNA gyrase subunit B n=11 Tax=Bacteria RepID=A6G5S5_9DELT Length = 872 Score = 620 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 217/569 (38%), Positives = 310/569 (54%), Gaps = 27/569 (4%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+ +I L GLE VR+RPGMY T + + E++DNS+DEALAGH K++ +++H Sbjct: 34 AYDESSISHLEGLEAVRKRPGMYIGDTDVTGLHKMVFEILDNSIDEALAGHCKQIQIVIH 93 Query: 61 ADQSLEVIDDGRGMPVDIHPEEG--VPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 D+S+ V DDGRG+P EG VPA + +LH GGKF N Y+ SGGLHGVG++V Sbjct: 94 EDESISVEDDGRGIPTGPMEVEGKMVPAAIAVFTKLHVGGKFDNAAYKVSGGLHGVGVTV 153 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS +E+ ++R+G+V+ FE GE ++L VVG R GT V F D + R Sbjct: 154 VNALSDWLELEIKREGKVFTARFERGEVARELDVVGETEAR--GTKVTFHADPLIYTGVR 211 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEI------NNTEQRWCYQDGLNDYLAEAVNGLPT 232 L+ + + L GV IT D EQ + + G+ ++ Sbjct: 212 VDFDTLSSRFRELSYLTEGVNITLTDLRPTINGEKKREQSFDGEGGVASFVELLTAKRTR 271 Query: 233 L-------PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 285 + + PF V AL W E + Y N I GGTH+ GLR Sbjct: 272 IGAMIELRSQVPFEFEGQDHELGVQVALQWTDAYHE-MVHCYTNNIANRDGGTHLTGLRT 330 Query: 286 GLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAA 344 L + + +N+L L+ ED+ + ++SVK DP+F QTKE+L S + A Sbjct: 331 SLTRVVNGYAGDKNLLKGHKGSLAGEDVREGLVAIISVKHPDPKFNSQTKEKLVSSEVTA 390 Query: 345 FVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA---KKVVRKKLTSGPALPGKL 401 V V +A + + A+L+ E A+ +A+ R A + + RK + G +LPGKL Sbjct: 391 LVGTAVTEALSRHFEEKPKDAKLVVEKALLAARARAAARKARETITRKGVLDGLSLPGKL 450 Query: 402 ADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV 461 ADC +D ELF+VEGDSAGGSAKQ RDR+ QAI+PL+GKILN + D++L+SQE+ Sbjct: 451 ADCQEKDPELAELFIVEGDSAGGSAKQGRDRKVQAILPLRGKILNVEKARIDKILSSQEI 510 Query: 462 HDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHV 519 + A+G D + +LRY KI I+ DAD DG HI TLL F +HF +++ G++ Sbjct: 511 VTLITALGTGIGEDTYSIDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRHFVEIIERGYL 570 Query: 520 YVALPPLYRIDLGKEVYYALTEEEKEGVL 548 YVA PPLY++ GK+ Y E + + Sbjct: 571 YVAQPPLYKVKAGKKERYIKNEGALDEFI 599 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 4/77 (5%) Query: 555 KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSED 614 + ++QR+KGLGEMNP QL ETT+DP R L+Q+ I ++D D + +L+ + Sbjct: 799 RSGLSIQRYKGLGEMNPDQLWETTMDPENRELLQIKIAEKD--IADEVFTVLMGDE-VAP 855 Query: 615 RRNWLQEKG-DMAEIEV 630 RR ++ E + ++V Sbjct: 856 RREFITENALNTRNLDV 872 >UniRef50_A0LUT9 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Actinobacteria (class) RepID=A0LUT9_ACIC1 Length = 703 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 234/684 (34%), Positives = 351/684 (51%), Gaps = 60/684 (8%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 T Y A + VL GLE VR+RPGMY +T H E++DN+VDEALAG+ +DVI Sbjct: 25 TDAYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCVWELLDNAVDEALAGYGDAIDVI 84 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 ++AD S+EV D GRG+PVD+ P+ G+ VE++ +LHAGGKF Y SGGLHGVG SV Sbjct: 85 VYADGSVEVRDTGRGIPVDVEPKTGLTGVEVVFTKLHAGGKFGGGAYGTSGGLHGVGASV 144 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENG--------------EKVQDLQVVGTCGKRNTGTS 164 VNAL+ R++V V RDG + ++F G L ++ TGT Sbjct: 145 VNALAARLDVEVDRDGATWTMSFRRGRRGIFDGPGPKAPFRPGGGLAKARRLPRKVTGTR 204 Query: 165 VHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL 223 V FWPD F R + L + A L PG+ IT +DE + + + G D+ Sbjct: 205 VRFWPDPQIFLRDARIDLDALIARARQTAFLVPGLAITIRDETTAYAETFRFSGGTKDFA 264 Query: 224 AEA---------------VNGLPTLPEKPFIGNFAGDTE--------AVDWALLWLPEGG 260 + G E + + G + VD AL W G Sbjct: 265 DYLAAEAGAQTSVSGTLQLRGTGQFTETVPVLDDRGHSVPQDVIREMVVDVALRW-DSGY 323 Query: 261 ELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVL 320 + + S+VN++ T +GG+HV G + ++ + + ++ + + +D+ + V+ Sbjct: 324 DTVIRSFVNVVATPKGGSHVTGFERAVVKVVSDAARSARLV-KDEPIVKDDVLEGLTAVV 382 Query: 321 SVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ----NVQAAELLAEMAI--- 373 SV+ +PQF GQTKE L + V VV + + + QA+ + E + Sbjct: 383 SVRFPEPQFDGQTKEVLGTPAATRIVFDVVSRGLRAFFSSTRRVDRQASRAVLEKVVAAA 442 Query: 374 SSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDRE 433 + + + RK ALP KLADC + D +RTELF+VEGDSA G+AK AR+ E Sbjct: 443 RTRRALRAHKEAQRRKNALESAALPAKLADCRSTDASRTELFIVEGDSALGTAKLARNSE 502 Query: 434 YQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDLSQLRYGKICILADAD 492 +QA++P++GKILN + ++L + E I IG S L +RYGK+ I+ DAD Sbjct: 503 FQALLPIRGKILNVQKADLSDMLNNAECAAIIQVIGAGSGRSFSLDAVRYGKVIIMTDAD 562 Query: 493 SDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG--KEVYYALTEEEKEGVLEQ 550 DG HI LL LF ++ R L+ G ++ A+PPL+RI++ K+ Y ++ E +L Sbjct: 563 VDGAHIRCLLLTLFFRYMRPLLDAGRIFAAVPPLHRIEVSGRKDPVYTYSDAELHRLLAD 622 Query: 551 LKRKKGKP-NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAK 609 L R+ + QR+KGLGEM+ QL ETT+DP R L ++T+ D +A ++L+ Sbjct: 623 LDRQGIRYKTPQRYKGLGEMDAAQLAETTMDPAHRVLRRMTL--TDAAAAEAAFELLMGG 680 Query: 610 KRSEDRRNWLQEKG---DMAEIEV 630 R+ ++ D + I+V Sbjct: 681 DVV-PRKEFIAASAATLDRSRIDV 703 >UniRef50_UPI00016C54E0 DNA gyrase subunit B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54E0 Length = 810 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 197/553 (35%), Positives = 300/553 (54%), Gaps = 11/553 (1%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y D ++ L +R RPGMY T +HL EV+ NSVDEALAG K + + +H Sbjct: 10 GYTEDNLQTLKDAAHIRHRPGMYIGNTDIEGMHHLVWEVVYNSVDEALAGFCKNIFITVH 69 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 +D+S+ V DDGRG+PV + + G +E L + GKF+N Y+ S GLHG+G +N Sbjct: 70 SDESITVSDDGRGIPVGVKADTGKSTLEEALTIAGSSGKFNNDAYKTSAGLHGMGAKAMN 129 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS+ ++RDG+VY + FE G L+ +G K TGT++ F PD F F Sbjct: 130 ALSEWCTAEIKRDGRVYKMEFEKGYATSKLEDLGPAPKGQTGTTITFKPDPEKFGDILFD 189 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240 RL + + L G+++ DE + + G+ +Y+ T +I Sbjct: 190 YDRLGTRFQQISFLNKGLKLALADERVGKSDTFHSERGIAEYVEVLNRSEQTNYPLIYI- 248 Query: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300 N D V+ + + L + N GGTH++G R GL A+ + + N+ Sbjct: 249 NKQIDGVTVEVCFQYTQGETK-LEMCFTNNAYNKDGGTHLSGFRGGLTRAIGHYGKKANL 307 Query: 301 LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ 360 ++L +D + V+++ P+F QTK +L+S + S VV + +L + Sbjct: 308 FKE-IELRGDDFREGLTAVINISHPQPKFESQTKVKLTSPEVEGQTSSVVYEVLSDYLER 366 Query: 361 NVQAAELLAEMAISSAQRRMRAAKKVV----RKKLTSGPALPGKLADCTAQDLNRTELFL 416 N + AE + + + +A+ R+ A K RK + LPGKL DC+++D TELFL Sbjct: 367 NPKEAERICKKVLLTAEARIAAKKARDAVKGRKDALNSGGLPGKLYDCSSRDRENTELFL 426 Query: 417 VEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-D 475 VEGDSAGGSA+ RDRE+QAI+PL+GK+LN + +++L + E+ + A+G+D D+ + Sbjct: 427 VEGDSAGGSAESGRDREFQAILPLRGKVLNVEKAKFEKLLENNEISALISAVGVDIDNVE 486 Query: 476 DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEV 535 D+S++RYGKI I+ DAD DG HI TLL F + R L++ GHV+VA PPLY++ KE Sbjct: 487 DVSKVRYGKIIIMTDADVDGQHIRTLLLTFFFRQMRKLIEAGHVFVARPPLYKVTQKKET 546 Query: 536 YYALTEEEKEGVL 548 + + EE L Sbjct: 547 RFIQSREEMVTQL 559 Score = 68.0 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 544 KEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMM 603 +E V+E + + V RFKGLGEM+P +L TTLDP R L+++T++ D + + M Sbjct: 723 RELVIEIRRLGEKGIAVTRFKGLGEMDPEELWATTLDPQYRTLLKVTLN--DAFKAEEMF 780 Query: 604 DMLLAKKRSEDRRNWLQEKGDMAEIEV 630 L+ K+ +DR+ ++ + ++ Sbjct: 781 RTLMGKE-VQDRKAFIFSNSLKSVEDI 806 >UniRef50_Q98RQ4 DNA gyrase subunit B n=13 Tax=cellular organisms RepID=Q98RQ4_GUITH Length = 684 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 228/639 (35%), Positives = 366/639 (57%), Gaps = 26/639 (4%) Query: 10 IEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLE 66 I VL GLEPVRRRPG++ +T +HL E++DNSVDE++AG ++VDVI+++D+S+ Sbjct: 49 ITVLEGLEPVRRRPGVFIGSTGLKGFHHLVYEIVDNSVDESMAGFCEKVDVIINSDKSVT 108 Query: 67 VIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRV 126 + D+GRG+P D+HP A+E +L LHAGGKF Y+ SGGLHGVG+SVVN LS+ + Sbjct: 109 IRDNGRGIPTDLHPITNKTALETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVNGLSEYL 168 Query: 127 EVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDE-TFFDSPRFSVSRLT 185 +N +R+ + + F G+K+ + + GT+++F PD FF F + Sbjct: 169 NINTQRNQRKIGMRFVRGKKISECNISSFKKNIINGTTINFKPDYQIFFSEFDFDSYVIG 228 Query: 186 HVLKAKAVLCPGVEITFKDEINNTEQR--WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFA 243 L A L +++ +D + + + + G+ +Y+ E L P I + Sbjct: 229 GRLNELAFLNSNLKLLLEDRRSKIIKSSLFLHDGGIMEYINEMTINKKRLH-NPIILSKI 287 Query: 244 GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR 303 + ++ +W E + S+VN I T++GGTHV+G +QG+ + + + Sbjct: 288 FNNSQIEIGFVWSSEQYQENILSFVNNIRTVEGGTHVDGFKQGITKLVNLLSKKKIKSKE 347 Query: 304 GVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA-FILWLNQN 361 + +S E I + +++VK +P+F GQ K +L + V ++K+ I ++ N Sbjct: 348 KLNSISGEFIREGLTCLINVKTSEPEFEGQIKSKLGNPDIKFLVENLIKEEGEIHFIENN 407 Query: 362 VQAAELLAEMAISS--AQRRMRAAKKVVRKK-LTSGPALPGKLADCTAQDLNRTELFLVE 418 ++ E AIS+ A + AK++VRKK + G LPGKL+DC+ ++ +E+F+VE Sbjct: 408 SNLLNIVLEKAISAMNAYEASKKAKELVRKKSILEGITLPGKLSDCSEKNPQFSEIFIVE 467 Query: 419 GDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP--DSDD 476 GDSAGGSAKQARDR +QAI+PL+GKI+N + ++ + E+ + A+G+ + +D Sbjct: 468 GDSAGGSAKQARDRRFQAILPLRGKIINIEKNDEKKIYNNTEIQSLISALGLGVRGNDED 527 Query: 477 LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID------ 530 LS LRY KI I+ DAD DG HI TLL F ++ + L+ G VY+A PPLY+I+ Sbjct: 528 LSNLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQKELIDKGFVYIACPPLYKIENKKNKN 587 Query: 531 LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLT 590 L K Y +E E E +++ N+QRFKGLGEM P QL +TT+ P R L ++ Sbjct: 588 LDKNTQYCYSEGELEYIIQS---SHFNKNIQRFKGLGEMMPEQLWKTTMSPEMRILKKIK 644 Query: 591 IDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + D +R D + ++L+ K +R+ ++Q + + +I+ Sbjct: 645 LS--DAKRADKIFEVLMGSK-VPERKKFIQIQASLIKID 680 >UniRef50_O33367 DNA gyrase subunit B n=6 Tax=Bacteria RepID=GYRB_MYXXA Length = 815 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 206/601 (34%), Positives = 307/601 (51%), Gaps = 15/601 (2%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y D+I L G E VR+RPGMY T + L EV+DN+VDE+LAGH ++V++H Sbjct: 17 EYGTDSITKLEGREAVRKRPGMYIGDTMAYGLHKLVYEVVDNAVDESLAGHCTDIEVVIH 76 Query: 61 ADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D SL V D+GRG+PV HP+ G +E++L LHAG KF N Y+ SGGLHGVG++ V Sbjct: 77 VDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTCV 136 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 N LS+ +V V R+G VY A+ G + VGT KR GT + F PD T + F Sbjct: 137 NFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVGTTDKR--GTHIAFKPDATVMELVEF 194 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 + L+ L+ A L G+ I +DE N E + + G++ ++ TL +KP Sbjct: 195 NFETLSQRLRELAFLNAGLHIVVRDERTNKEHDFKFDGGISSFVEYLNKSKQTLHDKPIS 254 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 + + +D A+ W +G + ++ N I T +GG+H++G + L + + E + Sbjct: 255 FSTEREGVMLDIAMQWN-DGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKGS 313 Query: 300 ILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWL 358 + + ED + + V+SVK+ +PQF GQTK +L + + V +V D +L Sbjct: 314 LWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGSFL 373 Query: 359 NQNVQAAELLAEMA---ISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELF 415 + A+ + + +A + V RK + G LPGKLADC +D N +EL+ Sbjct: 374 EETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQIRDPNESELY 433 Query: 416 LVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GIDPD 473 +VEGDSAGGSAKQ RDR QAI+PL+GKILN ++ E+L S E+ + A+ GI + Sbjct: 434 IVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKL-LREMLTSAEIVTLITALGNGIGAE 492 Query: 474 SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 D + RY +I ++ DAD DG HI TLL R+ + Y++ K Sbjct: 493 DYDPEKARYHRIFLMTDADVDGSHIRTLLLTSSSGRCRSSCRRAISTSRSRRSYKVTRNK 552 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 + Y E L ++ + + + LG L E + R Q D Sbjct: 553 KDQYVKDEHALNEYLLKIASEHARVLTPGGE-LGGAELKALLEKVITYEERLEKQAKRRD 611 Query: 594 E 594 Sbjct: 612 A 612 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 6/101 (5%) Query: 531 LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLT 590 G+ + +E + K + +QR+KGLGEMNP QL +TT++P TR L+Q+ Sbjct: 720 RGRGEITVFSVQEVLAAVR--KDAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVR 777 Query: 591 IDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 + ED +D + +L+ + E RR +++ D+ +++ Sbjct: 778 V--EDAVESDEIFSLLMG-EAVEPRREFIERNALDVQNLDI 815 >UniRef50_Q4AAR9 Topoisomerase IV subunit B n=9 Tax=Mycoplasma RepID=Q4AAR9_MYCHJ Length = 642 Score = 610 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 213/636 (33%), Positives = 350/636 (55%), Gaps = 23/636 (3%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 TY+ + +++L GLE VR+RPGMY +T + L E+ DN++DEA+AG A + +I++ Sbjct: 2 TYSVEKLKLLKGLEAVRKRPGMYIGSTDKNGLHQLIWEIFDNAIDEAIAGFANEISLIIN 61 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 +D S+E+ D+GRG+P +IH + G VEL+ LH+G KFS Y+ +GGLHGVG SVVN Sbjct: 62 SDNSIEISDNGRGIPTEIHKKTGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVVN 121 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQD-LQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 ALS+++EV + RD +++ +F NG K++ +++G TGT + FWPD + F F Sbjct: 122 ALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSA--TTGTKIRFWPDFSLFSHSEF 179 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 + L+ L ++I F D NN E+++ + G+ ++ N + +K Sbjct: 180 DSEMIISRLRETCFLINNLKINFFDTKNNIEKKFLCERGIESFIEFLNNDQEKIHDKVIT 239 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 V++ ++ + S+VN + T GG+H NG + G L A+ + + N Sbjct: 240 FKEKMQEIIVEFGFQYVNSQ-QENIISFVNNVKTNLGGSHENGFKSGFLKAINTYGQQNN 298 Query: 300 ILPRGVKLSAEDIWDRCAYVLSVKMQDP--QFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 +L L D + VLS+++ + +F GQTK +LS+ V+ + + Sbjct: 299 LLKTKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEEVIFTNLMTF 358 Query: 358 LNQNVQAAELLAEMAISSAQRRMRAA-----KKVVRKKLTSGPALPGKLADCTAQDLNRT 412 N + A + + + +R ++ K + L GKL ++ Sbjct: 359 FALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTPANSKKAMNR 418 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 ELFLVEG+SAGGSAK AR+RE+QAI+PLKGKI+N + ++L ++E+ I A+G Sbjct: 419 ELFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIAIISALGTGI 478 Query: 473 D-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI-D 530 + +L L YGKI I+ DAD+DG HI L+ H R L++ G VY+A PPLYRI + Sbjct: 479 GQNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIAQPPLYRISE 538 Query: 531 LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLT 590 G++ Y EE+ E + + +QR+KGLGEMN QL +TT+DP R L ++ Sbjct: 539 KGRKDIYIWDEEKFEKYI----KNSTNLQIQRYKGLGEMNANQLWQTTMDPERRTLEKVL 594 Query: 591 IDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 I++ + + +L+ +R++ R++W+++ + + Sbjct: 595 IEN--YPKVEKNFQILMG-ERADLRKSWIEKNVNFS 627 >UniRef50_D0WQJ3 Putative DNA gyrase subunit B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQJ3_9ACTO Length = 735 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 251/718 (34%), Positives = 366/718 (50%), Gaps = 93/718 (12%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 ++Y A ++VL GLE VR+RPGMY +T H E+IDN+VDEAL GHA V+V L Sbjct: 16 ESYTARHLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAVDEALEGHADAVEVRL 75 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 +AD S+EV D+GRG+PVD P G+ VE++ +LHAGGKF +Y SGGLHGVG SVV Sbjct: 76 YADGSVEVRDNGRGVPVDEVPGVGLSGVEVVYTKLHAGGKFGGGSYGSSGGLHGVGASVV 135 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEK---------------------VQDLQVVGTCGK 158 NALS+R++V V R G+ Y + F GE L VVG K Sbjct: 136 NALSERMDVQVDRGGKTYQMQFHRGEPGRFSDGASGPDPRAPFSAFTESSVLDVVGKVAK 195 Query: 159 RNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN--------- 208 +GT V +W D F S FS L + A L PG+ I+ DE Sbjct: 196 NKSGTRVRYWADPEIFLASAAFSYEELVERARQTAFLVPGLTISLVDEREGAAGENAAGE 255 Query: 209 ----------------TEQRWCYQDGLNDYLAEA-----------VNGLPTLPEKP---- 237 + + + G D++ + G T EK Sbjct: 256 NAEGEGDEGQAPHEGPRTETFRFDGGTVDFVDFLAPDAAVTATMRLTGEGTFAEKVPVLD 315 Query: 238 -----FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 + AVD AL W + E ES+VN+I T GGTH +G QGL+ +R Sbjct: 316 AESGHLVSREVERAVAVDVALRWGKD-YETRVESFVNIIRTPGGGTHQSGFEQGLMKVVR 374 Query: 293 EFCEYR----NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 E + + ++ +D+ V++V++ +PQF GQTKE L + VSG Sbjct: 375 SLVESNSRRLKMSAKDPRIEKDDVLAGLTAVVTVRLPEPQFEGQTKEILGTSAVRGIVSG 434 Query: 349 VVKDAFILWLNQNVQAAE----LLAEMAISSAQRRMRAA---KKVVRKKLTSGPALPGKL 401 VV+ L + + + L E ++ + R+ A + RK +LP KL Sbjct: 435 VVERELGAILGSSKRDQKTETSRLLEKVVAEMRARVTARMHKEISRRKNALEASSLPAKL 494 Query: 402 ADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV 461 ADC ++D+ TELF+VEGDSA G+AK AR E+QA++P++GKILN + S+ ++L ++EV Sbjct: 495 ADCRSEDVAETELFIVEGDSALGTAKLARSSEFQALLPIRGKILNVQKASTADILKNKEV 554 Query: 462 HDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 +I +G + DL RYGK+ ++ DAD DG HI TLL LF ++ R LV+ G VY Sbjct: 555 SEIIQVVGAGSGRTFDLPAARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLVQEGRVY 614 Query: 521 VALPPLYRIDL------GKEVYYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPM 572 A+PPL+RI++ K Y +E++ L +L+R +QR+KGLGEM+ Sbjct: 615 AAVPPLHRIEVSGGKGGKKSYIYTYSEDQLHAELRKLERAGKSYREPIQRYKGLGEMDAH 674 Query: 573 QLRETTLDPNTRRLVQLTIDDEDD-QRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 QL ETT+DP+ R L ++ ++DE + + ++L+ RR ++ E + + Sbjct: 675 QLAETTMDPSRRTLRRIRMEDERALMEAETVFELLMGND-VAPRREFIVEGAAAVDRD 731 >UniRef50_C0W359 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W359_9ACTO Length = 746 Score = 600 bits (1546), Expect = e-170, Method: Composition-based stats. Identities = 235/740 (31%), Positives = 358/740 (48%), Gaps = 114/740 (15%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + +Y+A + VL GLE VR+RPGMY +T H E+IDNSVDEAL G+ + V Sbjct: 5 SSSYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIIDNSVDEALEGYGDSIAVT 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 +H D S+EV D+GRG+PVD+ P G+ VEL+ +LHAGGKF +Y +GGLHGVG SV Sbjct: 65 VHEDGSIEVRDNGRGVPVDVEPGSGLTGVELVYTKLHAGGKFGGGSYGAAGGLHGVGASV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK----------------------VQDLQVVGTC 156 VNALS+R++V V R G+ Y ++F G +L+V+G Sbjct: 125 VNALSERMDVAVDRGGKTYAMSFHRGVPGVFDDPDPAHPRPDTPFTEYTEASELRVIGKV 184 Query: 157 GKRNTGTSVHFWPDETFFDSP-RFSVSRLTHVLKAKAVLCPGVEITFKD----------- 204 + +GT V +W D F P + + L L+ + L PG+ +T D Sbjct: 185 KRGVSGTRVRYWADPQIFPRPSEYDAAALRARLRQTSFLVPGLSLTLTDERSAEEAARAE 244 Query: 205 -----------------------------------EINNTEQRWCYQDGLNDYLAEAVNG 229 + + + + G D++ Sbjct: 245 KAAPSGSGAAGDDPALRASAKNATEEASDLFASQTQAPEGSEVFLAKGGTRDFVDFLATD 304 Query: 230 LPTLPEKPFIGN--------------------FAGDTEAVDWALLWLPEGGELLTESYVN 269 G T +VD AL W G + + S+VN Sbjct: 305 ASVTDTFRLTGEGTYTETVQQLDKKSGHLRPVEVERTCSVDVALRWGI-GYDTIERSFVN 363 Query: 270 LIPTMQGGTHVNGLRQGLLDAMREFCEYR----NILPRGVKLSAEDIWDRCAYVLSVKMQ 325 +I T GGTH+ G Q + +R+ + + R K+ +DI V++V++ Sbjct: 364 IIATPMGGTHLTGFEQAVTKVLRKQIDSNARALKVTARDGKIEKDDILAGMTAVVTVRVP 423 Query: 326 DPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQA----AELLAEMAISSAQRRMR 381 +PQF GQTKE L + V+ VV+ L + + + L E + + R+ Sbjct: 424 EPQFEGQTKEVLGTAPVRQIVAKVVEKELTALLTSSKRDLKTQSRALQEKVVGEMRARIS 483 Query: 382 AA---KKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIM 438 A + RK LP KLADC + D+ +ELF+VEGDSA G+AK AR+ E+QA++ Sbjct: 484 ARMHKEITRRKTALETSTLPAKLADCRSDDVAASELFIVEGDSALGTAKNARNSEFQALL 543 Query: 439 PLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLH 497 P++GKILN + S ++L + E I +G + DL RYGK+ ++ DAD DG H Sbjct: 544 PIRGKILNVQKASQADMLRNAECSAIIQVVGAGSGRTFDLDSARYGKVILMTDADVDGAH 603 Query: 498 IATLLCALFVKHFRALVKHGHVYVALPPLYRI------DLGKEVYYALTEEEKEGVLEQL 551 I TLL LF ++ R +++ G VY A+PPL+RI KEV Y +++E L +L Sbjct: 604 IRTLLLTLFFRYMRPMIEAGRVYAAVPPLHRIEVSAQGRRKKEVIYTYSDDELVRTLRKL 663 Query: 552 KRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDD-QRTDAMMDMLLAK 609 +++ + QR+KGLGEM+ QL ETT++P R L ++T+ DE + + + ++L+ Sbjct: 664 EKQGRSFKEPQRYKGLGEMDAHQLAETTMEPEHRTLRRITLGDEAELLEAENVFELLMGS 723 Query: 610 KRSEDRRNWLQEKGDMAEIE 629 E RR+++ E + E Sbjct: 724 S-VEPRRDFIVEGAQDIDRE 742 >UniRef50_D1C5K6 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5K6_SPHTD Length = 674 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 218/651 (33%), Positives = 328/651 (50%), Gaps = 33/651 (5%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+ I VL G+E +R RPGMY +T +HL E +DN+ DEA+AG+ K + V + Sbjct: 33 GYSGADIRVLEGIEAIRTRPGMYIGSTGTTGLHHLIWEALDNATDEAIAGYGKNIWVEID 92 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGV--PAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 D + V D+ RG+P D G P +I+ H+GGKF Y+ +GGLHGVG +V Sbjct: 93 RDGWVTVRDEARGIPFDPKEINGKTLPTATVIMTVPHSGGKFEQGAYKTAGGLHGVGATV 152 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 +NALS+R+E+ + RDGQ + F G + C + TGT + + D F P Sbjct: 153 INALSERLELTIWRDGQQFFQTFTRGVP--GKHTITPCDPKRTGTQLRWLFDREIFADPA 210 Query: 179 FSV--SRLTHVLKAKAVLCPG----VEITFKDEINNTEQRWCYQDGLNDYLAEA---VNG 229 + L+A A L G + I D EQ + + GL DY+ E Sbjct: 211 VGYQRDVVESRLRAAAYLNRGIAYHLRIWDDDAGEMVEQTFHSERGLVDYVEELRPRDKE 270 Query: 230 LPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 L ++ D ++ A+ G S+ N + T++GGTH +G + L Sbjct: 271 SQPLFKEVVAIAETRDDVVIEVAVQPN-RGERTRVVSFANGVRTIEGGTHESGFQAALTK 329 Query: 290 AMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 + + + + + A+ I + ++SVK+ +PQF GQTK RL++ V V Sbjct: 330 VLNDQAIRLGVTKKR-EFDADLIREGLVAIVSVKLTNPQFEGQTKNRLTNSGVDGIVRSV 388 Query: 350 VKDAFILWLNQNVQAAELLAE--------MAISSAQRRMRAAKKVVRKKLTSGPALPGKL 401 V DA W+ N AA + A R+ K R A+ K Sbjct: 389 VGDALTRWMEANESAAREWVRTLEQRRKARDAAKAAARLVMTGKSRRNGALLDAAISDKF 448 Query: 402 ADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV 461 C +D R EL+LVEGDSAGGSA Q R ++QAI+ L GK LN + + V ++E+ Sbjct: 449 IPCNTKDPERAELYLVEGDSAGGSASQGRFSDFQAILKLSGKPLNVARANIERVAKNEEI 508 Query: 462 HDISVAIGIDP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 + IG + D+S+LR+ KI I+ DAD DG+HI LL LF++ L++ GH+Y Sbjct: 509 RTLLQVIGTGSRQAFDISRLRFHKIIIMTDADVDGMHIQALLLTLFLQELPQLIERGHIY 568 Query: 521 VALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLD 580 +A PPLY + +V + + E + E +K +KG ++R+KGLGEMNP +LRETT+D Sbjct: 569 LAAPPLYSVRQNGKVTWLRDD---EALREWMKGRKGPFELKRYKGLGEMNPRELRETTMD 625 Query: 581 PNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 P RRL ++T+ ED + M+ L+ +E RR +L ++ EI+V Sbjct: 626 PERRRLRRVTL--EDAALAERMVYELMEDTNAEGRRTFLAQRARKYQEIDV 674 >UniRef50_D0RNK2 DNA topoisomerase IV, B subunit n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNK2_9RICK Length = 646 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 234/645 (36%), Positives = 380/645 (58%), Gaps = 25/645 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDV 57 +++TY+A IEVL GL PVR+RPGMY T +HL E++DNS+DEA+AG+AK + + Sbjct: 3 ISKTYSAKDIEVLEGLAPVRKRPGMYIGGTDETAYHHLANEILDNSIDEAVAGYAKEIVI 62 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 L ++ + DDGRG+P+D HP++ A+E+++ LH+GGKF++ Y+ S GLHGVG+S Sbjct: 63 KLVNKNTIIISDDGRGIPIDKHPKKKKTALEVVMTTLHSGGKFNDSVYKSSAGLHGVGLS 122 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD-S 176 VVNALS ++ + V + ++Y+ + G+ + L+ G +N GT + F PD F Sbjct: 123 VVNALSSKLNIQVTKSSKIYSQDYSKGKILNKLKTKGKNKIKN-GTQITFSPDPEIFGKD 181 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEIN--------NTEQRWCYQDGLNDYLAEAVN 228 F ++ + K KA L G++I+++ + +++ + GL D+L +N Sbjct: 182 VNFKPEKIYELAKNKAYLQKGIKISWECNKDLLNRKSSVPSKETLLFSKGLEDFLKNEIN 241 Query: 229 GLPTLPEKPFI--GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 L EK GN +++AL + E + +++ N + M GGTH G R G Sbjct: 242 QNNVLHEKVSFQSGNLEDKKGKIEFALQFNKEKIKYN-KAFCNTVYNMNGGTHDAGFRSG 300 Query: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 + ++R++ + +N K + +DI+D+ AY++SV + +P+F GQTK +LSS + Sbjct: 301 IAKSIRKYAKNKN-NKIVSKATQDDIFDQAAYIISVYISNPEFEGQTKHKLSSNFVQKYC 359 Query: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRR--MRAAKKVVRKKLTSGPALPGKLADC 404 AF WLN+N +AA+ + + + + + V R+ LPGKL+DC Sbjct: 360 DSFASSAFDEWLNRNSKAAKNILNVLEEKIREKNIYDLNQNVERQSAFRKIRLPGKLSDC 419 Query: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 T+ TELF+VEGDSAGGSAKQARDR QAI+PL+GKILN ++ ++LA+ E++++ Sbjct: 420 TSDKTEGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVKSSNAAKILANSEINNL 479 Query: 465 SVAIGIDPDSDDLSQ-LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 A+G + + LRY KI I+ DAD DG HI+TLL F+ L+ GH+Y+A+ Sbjct: 480 LQALGCGRGKNYSKKDLRYEKIIIMTDADVDGDHISTLLLTFFISEMPQLILDGHLYLAV 539 Query: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583 PPLY++++ + YA+ E EK +L+ K+ K + RFKGLGEM P QL+ETT++ T Sbjct: 540 PPLYKLNISGKSTYAIDESEKNKLLKDNKKAK--IEISRFKGLGEMMPAQLKETTMNIET 597 Query: 584 RRLVQLT--IDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 R+L+++ + ++T+ ++ L+ K +E R ++ E + + Sbjct: 598 RKLIKVVLPVQKPKMKKTNKLVSDLMGKN-AELRLKFISENANKS 641 >UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K4K4_SCHJY Length = 1499 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 141/654 (21%), Positives = 263/654 (40%), Gaps = 54/654 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + + ++ E V RRP Y + + E+I Sbjct: 71 SQQYQRISPREHVLRRPDTYIGSVEKTEMPMWVYDSEQNKMVYKEVNIVPGLYKIFDEII 130 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + + V + + + V ++G+G+PV+IH +EG+ ELI L Sbjct: 131 VNAADNKVRDPTMNTLKVEIDPEANVISVYNNGKGIPVEIHEKEGIYIPELIFGHLLTSS 190 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S V + Y + + V Sbjct: 191 NYDDNQKKVTGGRNGYGAKLCNIFSHEFTVETADKLRMKKYKQTWTENMSKKSEPKVVDM 250 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 + + T + F PD F + L V+K + G K +NN Sbjct: 251 KRADEYTKITFKPDLAKFGMTKLD-DDLVSVVKRRVYDMAGTIPDIKVFLNNERINI--- 306 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 Y+ V+ L + D W + + G+ S+VN I T +G Sbjct: 307 KNFRKYVELFVSSLRNRTDSTKPPTILYDRPNERWEVAYTLSDGQFKNISFVNSIATTRG 366 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 GTHVN + ++ ++ +N + L I + ++ ++ +P F QTKE Sbjct: 367 GTHVNYVADEIVKRVQAEFSKKN---KHAALKPFQIKNNLWLFINCQIVNPSFDSQTKET 423 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA 396 L+++ A + D F L ++ + + +E+A + A ++M R ++T P Sbjct: 424 LTTKPSAFGSKCDLSDTFFKQLIKS-EIIAVCSELAKAKADQQMSKTDGKSRSRITGLPK 482 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSD 453 L ++ + L L EGDSA R+Y + PL+GK+LN E S + Sbjct: 483 LSD-ANKAGTRESKKCTLILTEGDSAKTLVVSGLGVVGRDYYGVYPLRGKLLNVREASYN 541 Query: 454 EVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 +++ ++E+ I +G+ + LRYG + I+ D D DG HI L+ + Sbjct: 542 QIINNKEIQAIKKILGLAHNKKYTSTDGLRYGHLMIMTDQDHDGSHIKGLIINYLESTYP 601 Query: 512 ALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMN 570 +L+ G + + P+ R G+E+ T E + E +G +++ +KGLG + Sbjct: 602 SLLHLEGFLIEFITPIVRCRKGREIISFFTLPEFDYWKENNNNGRG-WSIKYYKGLGTSD 660 Query: 571 PMQLRETT--LDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 ++E LD + ++ + + D ++DM +KK+++ R+ WL+ Sbjct: 661 AKDMKEYFSALDRHIKQFHTIQDGEND------LIDMAFSKKKADVRKEWLRTY 708 >UniRef50_A7I8U0 DNA gyrase subunit B n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I8U0_METB6 Length = 708 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 168/484 (34%), Positives = 255/484 (52%), Gaps = 13/484 (2%) Query: 155 TCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWC 214 T G + TGT +HF PD + F++ F L H L+ A L G+ I DE +C Sbjct: 230 TLGNKLTGTRIHFVPDASIFETTTFDYDVLAHRLRELAFLNAGLTIIITDERTGDSATYC 289 Query: 215 YQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALL-WLPEGGELLTESYVNLIPT 273 Y GL++++ G L P +D + G + +YVN + T Sbjct: 290 YAGGLSEFVKYLNEGNEVLHPNPIYITKKDAENKLDLEVAMQYTTGYDEKLYTYVNSVNT 349 Query: 274 MQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLS--AEDIWDRCAYVLSVKMQDPQFAG 331 +GGTH+ G R + + + I+ +++ ED+ + V+SVKM +PQF G Sbjct: 350 REGGTHLEGFRSAITRGINVVAKRNGIIKENAQVTLRGEDVREGLTSVVSVKMANPQFEG 409 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVR 388 QTK RL + V +V A + ++N +++ E A+S+A+ R A R Sbjct: 410 QTKMRLGNSSVKGIVDSLVYAALTEYFDENPGVLKIIVEKALSAAKAREAARNARDLARR 469 Query: 389 KKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW 448 K LPGKL+DC+ +D ++E+++VEGDSAGGSAKQ RDR++QAI+PL+GKILN Sbjct: 470 KSSLESAGLPGKLSDCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNVE 529 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDS-DDLSQLRYGKICILADADSDGLHIATLLCALFV 507 + ++L + E+ + AIG D + RY +I I+ DAD DG HI TLL F Sbjct: 530 KAGEHQILKNAEIQTLINAIGTGIGEKFDPERARYHRIVIMTDADVDGAHIRTLLLTFFY 589 Query: 508 KHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLG 567 ++ R L++ G+VY+A PPL+RI GKE Y E E + V + K ++QR+KGLG Sbjct: 590 RYMRKLIELGYVYIAQPPLFRIAKGKEEKYVYKEAEMQKVSAAMGDKG--VSIQRYKGLG 647 Query: 568 EMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA- 626 EMN QL +TT+DP R ++++I ED D M L+ K E R+N++ Sbjct: 648 EMNAQQLWDTTMDPENRIFLKVSI--EDAYEADEMFKTLMGKD-VEIRKNFIMRHAKEVT 704 Query: 627 EIEV 630 +++ Sbjct: 705 NLDI 708 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 79/159 (49%), Positives = 101/159 (63%), Gaps = 3/159 (1%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDV 57 MT TY+A I VL GL+PVR RP MY +T +HL EV+DNS+DEALAG R+ V Sbjct: 1 MTDTYDASHITVLEGLQPVRERPAMYIGSTDTRGLHHLVYEVVDNSIDEALAGFCNRICV 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 +++ D SL V D+GRG+PVD + A+E++L LHAGGKF + YQ SGGLHGVG+S Sbjct: 61 VINKDGSLMVEDNGRGIPVDTMEKNHKSALEVVLTVLHAGGKFDKETYQVSGGLHGVGVS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC 156 VVNALS + V RDG +Y + F G+ L Sbjct: 121 VVNALSNWLSARVYRDGNIYEMRFSQGKTTLPLTTREET 159 >UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota RepID=TOP2B_HUMAN Length = 1626 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 134/650 (20%), Positives = 244/650 (37%), Gaps = 58/650 (8%) Query: 10 IEVLTGLEPVRRRPGMYTDTT-------------------------RPNHLGQEVIDNSV 44 + T LE + RP Y + + E++ N+ Sbjct: 55 YQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 114 Query: 45 DEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN 102 D + V + + + + ++G+G+PV H E V LI +L + + Sbjct: 115 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 174 Query: 103 KNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCGKRN 160 + +GG +G G + N S + V + + + N + + Sbjct: 175 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 234 Query: 161 TGTSVHFWPDETFFDSPRFSVSR---LTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD 217 T + F PD + F + +T A C GV++ F + + Sbjct: 235 -YTCITFQPDLSKFKMEKLDKDIVALMTRRAYDLAGSCRGVKVMFNGKKLPV-------N 286 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 G Y+ V L E + W + S+VN I T +GG Sbjct: 287 GFRSYVDLYVKDK--LDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGG 344 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 HV+ + ++ + E + +N GV + + + ++ +++P F QTKE + Sbjct: 345 RHVDYVVDQVVGKLIEVVKKKN--KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENM 402 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 + + + + + F N E + AQ ++ V+ G Sbjct: 403 TLQPKSFGSKCQLSEKFFK-AASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPK 461 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDE 454 D + L L EGDSA A R+ + PL+GKILN E S + Sbjct: 462 LDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQ 521 Query: 455 VLASQEVHDISVAIGIDPDS-----DDLSQLRYGKICILADADSDGLHIATLLCALFVKH 509 ++ + E+++I +G+ + L LRYGKI I+ D D DG HI LL + Sbjct: 522 IMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHN 581 Query: 510 FRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEM 569 + +L+KHG + + P+ + K+ + E + + ++ +K ++ +KGLG Sbjct: 582 WPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKA-WKIKYYKGLGTS 640 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + +E D R++ EDD A + + +KK+ +DR+ WL Sbjct: 641 TAKEAKEYFADMERHRILFRYAGPEDD----AAITLAFSKKKIDDRKEWL 686 >UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces pombe RepID=TOP2_SCHPO Length = 1485 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 143/651 (21%), Positives = 267/651 (41%), Gaps = 52/651 (7%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVID 41 + LT E V RRP Y + + E+I Sbjct: 76 TQYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIV 135 Query: 42 NSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK 99 N+ D + + V L + + + ++G+G+P++IH +E + ELI L Sbjct: 136 NAADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHDKEKIYIPELIFGNLLTSSN 195 Query: 100 FSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCG 157 + + + +GG +G G + N S V + + Y + + + V+ + Sbjct: 196 YDDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERMKKYKQTWYDNMSRKSEPVITSLK 255 Query: 158 KRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD 217 K + T + F PD F + + ++K + G K +NN Sbjct: 256 KPDEYTKITFKPDLAKFGMDKID-DDMVSIIKRRIYDMAGTVRETKVYLNNERISIS--- 311 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 G Y+ + E+P + + D A G+ S+VN I T++GG Sbjct: 312 GFKKYVEMYLASDTKPDEEPPRVIYEHVNDRWDVAFAV--SDGQFKQVSFVNNISTIRGG 369 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 THVN + ++DA+ E + N + + A I + ++ ++++P F QTKE L Sbjct: 370 THVNYVANKIVDAIDEVVKKEN---KKAPVKAFQIKNYVQVFVNCQIENPSFDSQTKETL 426 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 +++ A + D F+ + ++ E+L A + A +++ +R ++T L Sbjct: 427 TTKVSAFGSQCTLSDKFLKAIKKSSVVEEVLK-FATAKADQQLSKGDGGLRSRITGLTKL 485 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDE 454 ++ ++ L L EGDSA A R+Y + PL+GK+LN E S + Sbjct: 486 ED-ANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLNVREASHSQ 544 Query: 455 VLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRA 512 +L ++E+ I +G D+ LRYG + I+ D D DG HI L+ + + Sbjct: 545 ILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDHDGSHIKGLIINYLESSYPS 604 Query: 513 LVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNP 571 L++ G + + P+ + G +V T E E E +G ++ +KGLG + Sbjct: 605 LLQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEYWKEANNNGRG-WKIKYYKGLGTSDH 663 Query: 572 MQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 ++ D + + ++D +++M AKK+++ R+ WL+ Sbjct: 664 DDMKSYFSDLDRHMKYFHAMQEKDA----ELIEMAFAKKKADVRKEWLRTY 710 >UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA Length = 1462 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 144/650 (22%), Positives = 260/650 (40%), Gaps = 52/650 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPN------------------------HLGQEVIDN 42 + + T LE + RP Y + + + E++ N Sbjct: 20 EEMYQKKTQLEHILLRPDTYVGSIEKHTQNLWVYENDEMVHRAVSYVPGLYKIFDEILVN 79 Query: 43 SVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 + D + V + + ++ V ++G G+PV+IH EE V ELI L + Sbjct: 80 AADNKQRDPSMDSLKVTIDPEANTVSVYNNGDGVPVEIHQEEKVYVPELIFGHLLTSSNY 139 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVR--RDGQVYNIAFENGEKVQDLQVVGTCGK 158 + + +GG +G G + N S + R + Y F N + V+ C Sbjct: 140 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGRRLKKYKQVFSNNMGTKCEPVITKCKA 199 Query: 159 RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRW-CYQD 217 T V F PD F + + K + T K E+N T R+ ++D Sbjct: 200 SENWTKVTFKPDLEKFKMAYLEEDVVALMKKRVLDMAGCFGKTVKVELNGTLIRFKSFRD 259 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 + +L A P P I GD W + G+ S+VN I T++GG Sbjct: 260 YADLFLKCAEKSKPMPL--PRIHAKVGD----RWEICISLSDGQFQQVSFVNSIATIKGG 313 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 THV+ + + + + + + A + + ++ + +P F QTKE L Sbjct: 314 THVDYITNQITTYIMNKVNKK---KKDANVKAHTVKNHLWVFVNSLIDNPAFDSQTKETL 370 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 ++RQ + V ++ + + ++ LL A + ++ ++L Sbjct: 371 TTRQASFGSKCDVPESMLKDVEKSGIVDTLL-SWADFKQSKDLKKTDGTKTQRLRGC--K 427 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDE 454 + ++ + L L EGDSA A R++ + PL+GK+LN E SS + Sbjct: 428 AEDANEAGGRNSEKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASSKQ 487 Query: 455 VLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRA 512 ++ ++E+ +I +G+ + + ++ LRYG + I+AD D DG HI LL + + Sbjct: 488 IMDNEEIQNIKKILGLQQNKEYTNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPS 547 Query: 513 LVKHG-HVYVALPPLYRIDL-GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMN 570 L+K + P+ R K + + E E E+L ++ +KGLG Sbjct: 548 LLKVPSFLVEFTTPVIRASHPNKTITSFYSMPEYEAWKERLGNSATSWKIKYYKGLGTST 607 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 P + RE D R + DD+ +++ +KK++E R+ W++ Sbjct: 608 PQEGREYFSDLGRHRKDFIW----DDELDGNAIELAFSKKKAEGRKIWMR 653 >UniRef50_UPI0000DA3D74 PREDICTED: similar to topoisomerase (DNA) II beta n=1 Tax=Rattus norvegicus RepID=UPI0000DA3D74 Length = 1445 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 134/650 (20%), Positives = 243/650 (37%), Gaps = 58/650 (8%) Query: 10 IEVLTGLEPVRRRPGMYTDTT-------------------------RPNHLGQEVIDNSV 44 + T LE + RP Y + + E++ N+ Sbjct: 43 YQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILVNAA 102 Query: 45 DEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN 102 D + V + + + + ++G+G+PV H E V LI +L + + Sbjct: 103 DNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSNYDD 162 Query: 103 KNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCGKRN 160 + +GG +G G + N S + V + + + N + + Sbjct: 163 DEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDGED 222 Query: 161 TGTSVHFWPDETFFDSPRFSVSR---LTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD 217 T + F PD F + +T A C GV++ F + + Sbjct: 223 -YTCITFQPDLAKFKMEKLDKDIVALMTRRAYDLAGSCKGVKVMFNGKKLPV-------N 274 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 G Y+ V L E + W + S+VN I T +GG Sbjct: 275 GFRSYVDLYVKDK--LDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGG 332 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 HV+ + ++ + E + +N GV + + + ++ +++P F QTKE + Sbjct: 333 RHVDYVVDQVVGKLIEVVKKKN--KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENM 390 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 + + + + + F N E + AQ ++ V+ G Sbjct: 391 TLQPKSFGSKCQLSEKFFK-AASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPK 449 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDE 454 D + L L EGDSA A R+ + PL+GKILN E S + Sbjct: 450 LDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQ 509 Query: 455 VLASQEVHDISVAIGIDPDS-----DDLSQLRYGKICILADADSDGLHIATLLCALFVKH 509 ++ + E+++I +G+ + L LRYGKI I+ D D DG HI LL + Sbjct: 510 IMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHN 569 Query: 510 FRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEM 569 + +L+KHG + + P+ + K+ + E + + ++ +K ++ +KGLG Sbjct: 570 WPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKA-WKIKYYKGLGTS 628 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + +E D R++ EDD A + + +KK+ +DR+ WL Sbjct: 629 TAKEAKEYFADMERHRILFRYAGPEDD----AAITLAFSKKKIDDRKEWL 674 >UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=Q5KSK9_COPCI Length = 1572 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 138/656 (21%), Positives = 253/656 (38%), Gaps = 51/656 (7%) Query: 6 NADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEV 39 ++ + LT LE + +RP Y + + E+ Sbjct: 99 TSEMYQKLTQLEHILKRPDSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFFKIVDEI 158 Query: 40 IDNSVDEALAGH-AKRVDVILH-ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 + N+ D + + V + + ++ V ++GRG+P++IH +E + E+I L Sbjct: 159 LVNAADNKINDPSMDTLKVTIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTS 218 Query: 98 GKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGT 155 + + + +GG +G G + N S V + Q Y + + + Sbjct: 219 TNYDDDEKKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITK 278 Query: 156 CGKRNTGTSVHFWPDETFFDSPRFSVSR---LTHVLKAKAVLCPGVEITFKDEINNTEQR 212 + T + F PD F L + A V++ DE + Sbjct: 279 NTRGEEYTRITFRPDLKRFGMNSIDEDTVSLLKRRVFDMAGTVKDVKVFLNDERLKIKNF 338 Query: 213 WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWL-PEGGELLTESYVNLI 271 Y + + EA +P + + W + + G S+ N I Sbjct: 339 KQYVEMYVSSVQEAAAEKSGGAAQPK-QTVIHEQISDRWEIAYTLSTEGTFQHVSFANSI 397 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T +GGTHVN + + A+ +N +G + I + + + +P F Sbjct: 398 ATSKGGTHVNYIADQISKALVTSISKKN---KGATVKPAQIRNHMWLFVKSLIVNPTFDS 454 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL 391 QTKE L+ + D FI + ++ +L A A ++M+ A R +L Sbjct: 455 QTKELLTLPSSKFGSKPTISDEFIKKVAKSGIVDNVL-NWAKFKADQQMKRADGTKRSRL 513 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTW 448 L + + L L EGDSA A R+ + PL+GK+LN Sbjct: 514 LGLAKLSD-ANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVR 572 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALF 506 E D+++ ++E+ +I +G+ + D + S LRYG++ I+ D D DG HI L+ Sbjct: 573 EARHDQIMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRLMIMTDQDHDGSHIKGLIINFL 632 Query: 507 VKHFRALVKHG-HVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKG 565 + +L+K + + P+ R+ G +V T E E LE+ + K + +KG Sbjct: 633 DHFYPSLLKIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEETPDAR-KWESKYYKG 691 Query: 566 LGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 LG RE + + D ++D+ +KK++++R+ WL++ Sbjct: 692 LGTSEDKDAREYFSKMEKHMIPFAPTQEGD----RELIDLAFSKKKADERKEWLRQ 743 >UniRef50_A8S818 Putative uncharacterized protein n=6 Tax=Bacteria RepID=A8S818_9FIRM Length = 699 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 199/665 (29%), Positives = 328/665 (49%), Gaps = 42/665 (6%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRVDVI 58 Q Y ++I L G + VR+RP + + H E++ NS+DEA GH ++V Sbjct: 40 KQEYGNESITSLKGADRVRKRPAVIFGSDGVEGCAHSIFEIVSNSIDEARDGHGDTINVT 99 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN--KNYQFSGGLHGVGI 116 D S+ V D GRGMPVD + EG EL+ C ++AGGK+ NY+FS GL+G+G+ Sbjct: 100 RCKDGSVIVEDFGRGMPVDWNNGEGRFNWELLFCEMYAGGKYGEGEDNYEFSLGLNGLGL 159 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 S + ++ RDG Y++ F+ GE V LQ G+R TG+ +H+ PD+ F Sbjct: 160 CATQYASAWMTADIYRDGYHYHLDFKKGENVGGLQKEPYKGRR-TGSIIHWKPDDEVFTD 218 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEIN-------NTEQRWCYQDGLNDYLAEAVNG 229 S VL+ +AV+ G+ + F DE + WCYQ+G+ DY+AE Sbjct: 219 IDVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWHESWCYQNGIADYVAEVAGE 278 Query: 230 LPTLP----EKPFIGNFAGDTEAVDWAL--LWLPEGGELLTESYVNLIPTMQGGTHVNGL 283 P E +G D + + L E Y N GG+ + + Sbjct: 279 DTLTPVFSCESEAVGRDREDQPDYKVRMSAAFCFSNKVQLLEYYHNSSWLEHGGSPEHAV 338 Query: 284 RQGLLDAMREFCEYRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQC 342 R + + ++ + +N+ +G +S +D+ D YV S + QTK+ ++++ Sbjct: 339 RTAFVYQINKYLKEKNLYKKGESTISFQDVQDCLVYVSSSFSTRTSYENQTKKAITNKFV 398 Query: 343 AAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRR--MRAAKKVVRKKLTSGPALPG- 399 + ++ +K ++ + + A+ + + + + Q R ++ ++K L++ L Sbjct: 399 SQAMTDFLKHYLEVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQIDLANR 458 Query: 400 --KLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLA 457 K DC +D R EL++VEGDSA G+ K +RD EYQAIMP++GKILN + + Sbjct: 459 VQKFVDCRTRDSARRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLKADYARIFK 518 Query: 458 SQEVHDISVAIGIDPD----------SDDLSQLRYGKICILADADSDGLHIATLLCALFV 507 S + D+ +G + + +L LR+ KI I DAD DG I TL+ + Sbjct: 519 SDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQIRTLVLTMLY 578 Query: 508 KHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLG 567 + L+ G+VY+A PLY I Y+A TE EK L+++ KK +QR KGLG Sbjct: 579 RLTPTLINKGYVYIAESPLYEITTKDRTYFAYTESEKAAFLQKIGDKK--YTIQRSKGLG 636 Query: 568 EMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD--M 625 E +P + TT++P +RRL+++ D +T + D+LL + R+ + + G + Sbjct: 637 ENDPEMMWLTTMNPESRRLIKVM--PTDVVQTAQVFDILLGDNLA-GRKEHIAQHGAEYL 693 Query: 626 AEIEV 630 +++V Sbjct: 694 DDLDV 698 >UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota RepID=TOP2A_HUMAN Length = 1531 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 135/648 (20%), Positives = 252/648 (38%), Gaps = 54/648 (8%) Query: 10 IEVLTGLEPVRRRPGMYTDTT-------------------------RPNHLGQEVIDNSV 44 + T LE + RP Y + + E++ N+ Sbjct: 34 YQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAA 93 Query: 45 DEALAGH-AKRVDVILHADQS-LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN 102 D + V + + + + + ++G+G+PV H E + LI +L + + Sbjct: 94 DNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD 153 Query: 103 KNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAF-ENGEKVQDLQVVGTCGKR 159 + +GG +G G + N S + V R +++ + +N + ++++ G+ Sbjct: 154 DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFNGE- 212 Query: 160 NTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGL 219 T + F PD + F + +++ A G K +N + G Sbjct: 213 -DYTCITFQPDLSKFKMQSLDKDIVALMVRR-AYDIAGSTKDVKVFLNGNKLPV---KGF 267 Query: 220 NDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTH 279 Y+ + L E + W + S+VN I T +GG H Sbjct: 268 RSYVDMYLKDK--LDETGNSLKVIHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKGGRH 325 Query: 280 VNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS 339 V+ + ++ + + + +N GV + A + + ++ +++P F QTKE ++ Sbjct: 326 VDYVADQIVTKLVDVVKKKN--KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENMTL 383 Query: 340 RQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPG 399 + + + + + FI E + AQ ++ V+ G Sbjct: 384 QPKSFGSTCQLSEKFIKAAIG-CGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPKLD 442 Query: 400 KLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDEVL 456 D ++ L L EGDSA A R+ + PL+GKILN E S +++ Sbjct: 443 DANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQIM 502 Query: 457 ASQEVHDISVAIGID-----PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 + E+++I +G+ D D L LRYGKI I+ D D DG HI LL ++ Sbjct: 503 ENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHNWP 562 Query: 512 ALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNP 571 +L++H + + P+ ++ K+ + E E K K V+ +KGLG Sbjct: 563 SLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHK-KWKVKYYKGLGTSTS 621 Query: 572 MQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + +E D R +Q +D DA + + +KK+ +DR+ WL Sbjct: 622 KEAKEYFADM-KRHRIQFKYSGPED---DAAISLAFSKKQIDDRKEWL 665 >UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS63_ENCCU Length = 1144 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 138/661 (20%), Positives = 259/661 (39%), Gaps = 66/661 (9%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + + T +E + RP Y + + E+I Sbjct: 5 EETYQKKTPVEHILLRPDTYIGSVEKEAQEMYVWDEENGRMVYKSIEYVPGLYKIFDEII 64 Query: 41 DNSVDEALAGH-AKRVDVILHADQS-LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + + V + + + + V ++G+G+PV IH EE V ELI L Sbjct: 65 VNAADNKIRDPKMDVIKVSIDPEGNEISVYNNGKGIPVRIHKEENVYVPELIFGNLLTSS 124 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTC 156 +++ + +GG +G G + N SK V + Y + + V++ + Sbjct: 125 NYNDDEKKVTGGRNGYGAKLCNIFSKEFVVETADCEVKKYYRQRYRDNMGVKEDPEISRY 184 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 K + T + F PD F R + +L+ + G+ K +N Sbjct: 185 TKGD-FTKITFKPDLRRFKMTRLD-DDIVALLRKRVYDLAGIVKDVKIFLNEKRIEV--- 239 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 G +Y+ + P + D W L + S+VN I T +G Sbjct: 240 KGFKEYVKLYI-----PPGASVVHQVIND----RWELALTTSEEQFQQVSFVNGICTTKG 290 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 GTHVN + + ++D + E + + +G+ + + ++ + +P F QTKE Sbjct: 291 GTHVNHVVERIVDPLVEAIQKK---EKGLSVRPFQVRSCMFVFINSLIDNPAFDSQTKEN 347 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA 396 L+ R A F+ + +N + + A + ++++ +L+ P Sbjct: 348 LTLRASAFGSKCEPMGDFVKSIIKNTPIVQKITSFAKAKQSQQLKKTDGAKTSRLSGIPK 407 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSD 453 L T++ L L EGDSA A R+ + PL+GK+LN E S Sbjct: 408 LEDANFAGTSR-SKDCTLILTEGDSAKTLAVAGLSVVGRDAYGVFPLRGKLLNVREASHK 466 Query: 454 EVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 +++ + E+ I +G+ + +D+S LRYG + I+ D D DG HI L+ + Sbjct: 467 QIMENAEISSIKKILGLQHNKVYEDVSSLRYGHVMIMTDQDHDGSHIKGLIINFLDHFYP 526 Query: 512 ALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMN 570 +L+K G + + P+ R +V T E E + K+ + N++ +KGLG Sbjct: 527 SLLKIPGFLQEFITPIIRATKKGQVRDFFTLPEYE----EFKKNEDGWNIKYYKGLGTST 582 Query: 571 PMQLRETTLDP--NTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEI 628 ++ + + + L +D ++D+ KK+++ R+ WL + Sbjct: 583 SADAKQYFSNLPVHVKSFTPLAAED------KELIDLAFNKKKADARKTWLLNFAPGTFL 636 Query: 629 E 629 + Sbjct: 637 D 637 >UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae RepID=A5E7X7_LODEL Length = 1492 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 141/676 (20%), Positives = 271/676 (40%), Gaps = 65/676 (9%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 ++ + L+ LE + +RP Y + + E++ Sbjct: 80 SETYQKLSQLEHILKRPDTYIGSVEKTRTEMWCFDVESESMKFQEVTIVPGLYKIFDEIL 139 Query: 41 DNSVDEALAGH-AKRVDVILHADQSLE-VIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + K + V + + ++ V++DG+G+PV+IH +E + ELI L Sbjct: 140 VNAADNKIRDPSMKNIKVKIDPENNVIQVMNDGKGIPVEIHTKEKMYIPELIFGNLLTSS 199 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR--RDGQVYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S + EV G++Y + + + T Sbjct: 200 NYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQVWTDNMTKVGKPKITTL 259 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLC---PGVEITFKDEINNTEQRW 213 + T + F PD F L+ + + LC I D+ + Sbjct: 260 KTKKEYTKITFMPDLQKFGMDSLDEDLLSVLRRRVYDLCGTVRNCNIYLNDKRLSVN--- 316 Query: 214 CYQDGLNDYLAEAVNGLPTLP----EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVN 269 ++ + Y+ P KP + W + + G S+VN Sbjct: 317 SFKAYVEMYVKAIRERSPEPEGDAESKPATTTIVHEVFNDRWEVAFAVSDGNFNQVSFVN 376 Query: 270 LIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQF 329 I T GGTHV + ++ + E R + + + +++ D ++ +++P F Sbjct: 377 SIATTAGGTHVKYVSDQIITKLVETLSKREKGKKKLMIKPQEVRDNMFIFINSLIENPAF 436 Query: 330 AGQTKERLSSRQCAAFVSG--VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV 387 QTKE+L+++ + + I + + A+ + +A ++ + ++ A Sbjct: 437 TSQTKEQLTTKPSQFGGKEKFIATENLINRILK-TGIADKIRAIANANEDKALQKADGSK 495 Query: 388 RKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKI 444 + ++ + L +D + L L EG SA A R+Y PL+GK+ Sbjct: 496 KLRIKNQVNLVD-ANKAGTKDGLKCTLILTEGLSALNLAVAGLTVVGRDYYGCFPLRGKL 554 Query: 445 LNTWEVSSDEVLASQEVHDISVAIGIDPDS----DDLSQLRYGKICILADADSDGLHIAT 500 LN E S+D+V + E++ + IG+ +++ LRYG I I+ D D DG HI Sbjct: 555 LNVREASADQVSKNIEINALKQIIGLQHKKVYTQENIKSLRYGHIMIMTDQDQDGSHIKG 614 Query: 501 LLCALFVKHFRALVK-HGHVYVALPPLYRIDLG----KEVYYALTEEEKEGVLEQLKRKK 555 L+ F L+ G + + P+ ++ + K+V + E E E + Sbjct: 615 LIINFLETSFPGLLDIPGFLLQFITPIVKVTVNGRGAKKVIPFYSMPEFEAWREGEGQNC 674 Query: 556 GKPNVQRFKGLGEMNPMQLRETT--LDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 + + +KGLG P++ RE LD + +R L +D +D+ +KK+++ Sbjct: 675 -RWTQKYYKGLGTSTPLEAREYFTALDRHLKRFHALQGEDAS------CIDLAFSKKKAD 727 Query: 614 DRRNWLQEKGDMAEIE 629 DR+ WLQ ++ Sbjct: 728 DRKEWLQNFVPGDNLD 743 >UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PTE9_MALGO Length = 1376 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 139/659 (21%), Positives = 252/659 (38%), Gaps = 73/659 (11%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 +D + L+ LE V RRP Y + + E++ Sbjct: 24 SDTYQKLSQLEHVLRRPDTYIGSVERRTETMWVYDVAKEQMAYRDTSYVPGFYKIFDEIL 83 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + + V + D ++ V ++G+G+PV+IH +E V ELI L Sbjct: 84 VNAADNKVRDPSMDTMKVTIDKDAGTISVWNNGQGIPVEIHEKEQVYIPELIFGNLLTSS 143 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQ--VYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S V + Y F N +D + Sbjct: 144 NYDDDEAKVTGGRNGFGAKLTNIYSTEFIVETADKQRELKYKQVFSNHMHDKDKPKITKN 203 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 ++ T + F PD + F +L + G Sbjct: 204 TRKEEYTCITFKPDLSLFHMDSIHPDT-EALLMKRVFDMAGTR----------------- 245 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 + G P +P I A + W + + G S+VN I T++G Sbjct: 246 ------VIRPHGGNPV--PRPTIVYDASEDHGRLWEVGFAVSDGTARQVSFVNNIATIKG 297 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 G HV+ + +++ + E + + + A I + ++ ++ +P F QTKE Sbjct: 298 GKHVDHVESQIVERIMEHLKK---GKKDAPIKANHIRQQLWIFVNCQIVNPTFDSQTKET 354 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA 396 L+ + A V+ D F + ++ + + R+++A R ++ Sbjct: 355 LTLKPSAFGSKWVMPDDFAKKVLKSGVIDN-VQSIVQYHQDRQLQATDGRKRSRV--SVT 411 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSD 453 + L L EGDSA G A R+ + PL+GK+LN E + D Sbjct: 412 KLEDANWAGTKRSAECTLILTEGDSAKGLAVSGLSEVGRDAYGVFPLRGKLLNVREATYD 471 Query: 454 EVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 ++ + E+ +I +G+ + LRYG + I+ D D DG HI L+ + Sbjct: 472 QIKKNTEIKNIKEILGLQHGKSYSTVDGLRYGSLMIMTDQDFDGSHIKGLIINYLDHFYP 531 Query: 512 ALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMN 570 +L+K + + P+ + G+EV T E E + + +KGLG Sbjct: 532 SLLKIPNFLVEFITPIIKATKGQEVRSFFTIPEFEQW-KATGDGGRGWTTKYYKGLGTSK 590 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 P +++E D + L TI ED ++D+ KK+++DR+ WL++ ++ Sbjct: 591 PYEMKEYFRDMDRHMLSFDTIRPEDH----DLLDLAFNKKKADDRKEWLRQFVPGTYLD 645 >UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2-alpha (DNA topoisomerase II, alpha isozyme) n=1 Tax=Apis mellifera RepID=UPI0000DB6EE1 Length = 1407 Score = 531 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 135/659 (20%), Positives = 251/659 (38%), Gaps = 59/659 (8%) Query: 10 IEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVIDNS 43 + + LE + RP Y + + E++ N+ Sbjct: 23 YQKKSQLEHILLRPDTYIGSVEPVTEIMWVYDKEKESMTQKEIKYVPGLYKIFDEILVNA 82 Query: 44 VDEALAGH-AKRVDVILHADQSL-EVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS 101 D + + ++A+ ++ V ++G+G+PV IH EE + +I L + Sbjct: 83 ADNKQRDPKMDTIKIEINAENNIISVWNNGKGIPVVIHKEENMYVPTMIFGHLLTSSNYD 142 Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCGKR 159 ++ + +GG +G G + N S R V + + + N + Sbjct: 143 DEEEKVTGGRNGYGAKLCNIFSHRFTVETASKEYKKCLKQTWSNNMGSASEPRIKDFSGE 202 Query: 160 NTGTSVHFWPDETFFDSPRFSVSRLT---HVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 + T V F PD + F + A GV++ + Sbjct: 203 D-FTKVIFSPDLSKFKMQSLDDDIIALMSRRAYDIAASTRGVKVFLNGTKIPVKN----- 256 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 DY+ + G P + + A+ +G S+VN I T +G Sbjct: 257 --FKDYVDFYIKGREDDVGNPLKIVYENCGPRWEVAIALSDKG--FQQMSFVNSIATTKG 312 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 G HV+ + + ++ + E + +N GV + I + ++ + +P F QTKE Sbjct: 313 GRHVDHVTELIVKQLTETLKKKN--KAGVTIKPFQIKNHLWIFINCLINNPTFDSQTKEN 370 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA 396 ++ + + + + FI + + +L + + + K ++KL P Sbjct: 371 MTLQPKSFGSKCTLSEKFITSVTKIGIVEAVLTWAKFKADSQLQKLGPKSKQRKLQGIPK 430 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSD 453 L T + L L L EGDSA A R+ I PL+GKILN E + Sbjct: 431 LEDANDAGTNKSLE-CTLILTEGDSAKTMAVSGLAAIGRDKYGIFPLRGKILNVREATHK 489 Query: 454 EVLASQEVHDISVAIGIDPDS-----DDLSQLRYGKICILADADSDGLHIATLLCALFVK 508 ++L + E++++ +G+ +DL LRYGK+ I+ D D DG HI LL Sbjct: 490 QILENAEINNLIKILGLQYKKKYETREDLKTLRYGKMMIMTDQDQDGSHIKGLLINFIHH 549 Query: 509 HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGE 568 ++ +L+K V + P+ + G +V + E + + ++ +KGLG Sbjct: 550 NWPSLLKLNFVEEFITPIVKATKGNQVLSFFSMPEFNKWKSETENFH-TYKIKYYKGLGT 608 Query: 569 MNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 + +E + TR ++ D + D D + M +KK + R++WL D + Sbjct: 609 STAKEAKEYFENM-TRHRIRFRYDGDQD---DQNIIMAFSKKCVDQRKDWLMNHMDETK 663 >UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_9CHLO Length = 1459 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 151/663 (22%), Positives = 256/663 (38%), Gaps = 57/663 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 D + T LE + RP Y + + E++ Sbjct: 55 EDIYQKKTQLEHILLRPDTYVGSCEKTEEKAWVYCKDTNKLVQRQMSFVPGLYKIFDEIL 114 Query: 41 DNSVDEALAGHAK-RVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + + + V + + + V +DG G+PV++H EEGV ELI L Sbjct: 115 VNATDNKVRDPSMVTLRVDIDQEAGCIRVYNDGNGIPVEMHKEEGVYVPELIFGHLLTSS 174 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFENGEKVQDLQVVGTC 156 +++ + +GG +G G + N S V + Y F+N + VV C Sbjct: 175 NYNDNEKKVTGGRNGYGAKLANIFSTEFVVETCDGSRERRYRQVFKNNMGEKCEPVVTKC 234 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 + T + F PD F+ + + K + K +N + Sbjct: 235 KPTDNWTCITFKPDLAKFNMTELEDDTVALMCKRVYDAAGNIGKNTKVFLNGERLKV--- 291 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWL-PEGGELLTESYVNLIPTMQ 275 G +DY+ + G P+ + W + + G S+VN I TM+ Sbjct: 292 KGFSDYVDLYLEGRENAPK-------VYEKVNDRWEVCVTISDSGNFQQVSFVNGICTMK 344 Query: 276 GGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 GGTHVN + + + E + + + L A + + ++ +++P F QTKE Sbjct: 345 GGTHVNQVADEVAGKLLEKIKKKEKSCK--NLKAAHVKNHLWVFVNALIENPAFDSQTKE 402 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGP 395 L++R D I + N E + A + M+ + +LT P Sbjct: 403 TLNTRASNFGSKYEASDKVIKQM-MNSGIVEQILSWASFKQSKEMKKSDGKKATRLTGIP 461 Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSS 452 L D ++ L L EGDSA A R+ + PL+GK+LN + S Sbjct: 462 KL-DDANDAGGRNSEHCTLILTEGDSAKALAVSGLSVVGRDRYGVFPLRGKLLNVRDASH 520 Query: 453 DEVLASQEVHDISVAIGI--DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHF 510 D+++ + E++ I +G+ + LRYG I I+ D D DG HI LL HF Sbjct: 521 DQIMNNAEINHIKQILGLRHGTTYESAKSLRYGHIMIMTDQDHDGSHIKGLLINFLHAHF 580 Query: 511 RALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLE--QLKRKKGKPNVQRFKGLG 567 +L+K G + + P+ + GK+ T E + E + N++ +KGLG Sbjct: 581 PSLLKIPGFLVEFITPIIKATKGKQSKVFYTLPEYDNWKEHAEETGTGRGWNIKYYKGLG 640 Query: 568 EMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 + +E + + D D ++DM +KKR EDR+ WL Sbjct: 641 TSTAKEAKEYFAALDHHKKTFAWTTDGDG----NLIDMAFSKKRVEDRKAWLNAYEPGTY 696 Query: 628 IEV 630 +++ Sbjct: 697 LDM 699 >UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID=B3H4G2_ARATH Length = 1438 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 136/661 (20%), Positives = 264/661 (39%), Gaps = 54/661 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPN------------------------HLGQEVIDN 42 + + + LE + RP Y + + + E++ N Sbjct: 32 EEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYEKDEMVQRPVTYVPGLYKIFDEILVN 91 Query: 43 SVDEALAG-HAKRVDVILHADQS-LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 + D V V++ +Q+ + V + G G+PV+IH EEG+ E+I L + Sbjct: 92 AADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVPEMIFGHLLTSSNY 151 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGK 158 + + +GG +G G + N S + + Y FEN + V+ C K Sbjct: 152 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVITKCNK 211 Query: 159 RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG-VEITFKDEINNTEQRW-CYQ 216 T V F PD F+ + ++ + G + + K E+N + + Sbjct: 212 SENWTKVTFKPDLKKFNMTELE-DDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVKSFT 270 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 D ++ YL+ A P + W + G+ S+VN I T++G Sbjct: 271 DYVDLYLSAANKSRTEDPLPRLT-----EKVNDRWEVCVSLSEGQFQQVSFVNSIATIKG 325 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 GTHV+ + + N + + A ++ + ++ + +P F QTKE Sbjct: 326 GTHVDYVTSQIT---NHIVAAVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKET 382 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA 396 L+ RQ + + + F+ + ++ LL A + ++ + ++ Sbjct: 383 LTLRQSSFGSKCELSEDFLKKVGKSGVVENLL-SWADFKQNKDLKKSDGAKTGRVL--VE 439 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSD 453 A+ ++ L L EGDSA A R Y + PL+GK+LN E S+ Sbjct: 440 KLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLLNVREASTT 499 Query: 454 EVLASQEVHDISVAIGI--DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 ++ ++E+ ++ +G+ + ++++ LRYG++ I+ D D DG HI LL + Sbjct: 500 QITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLINFIHSFWP 559 Query: 512 ALVKHG-HVYVALPPLYRIDLG--KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGE 568 +L++ + + P+ + K+V + E E E LK +++ +KGLG Sbjct: 560 SLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKESLKGNATGWDIKYYKGLGT 619 Query: 569 MNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEI 628 + +E + + + D++D +++ +KK+ E R+NWL + Sbjct: 620 STAEEGKEYFSNLGLHKKDFVWEDEQDG----EAIELAFSKKKIEARKNWLSSYVPGNHL 675 Query: 629 E 629 + Sbjct: 676 D 676 >UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2_ARATH Length = 1473 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 136/661 (20%), Positives = 264/661 (39%), Gaps = 54/661 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPN------------------------HLGQEVIDN 42 + + + LE + RP Y + + + E++ N Sbjct: 32 EEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYEKDEMVQRPVTYVPGLYKIFDEILVN 91 Query: 43 SVDEALAG-HAKRVDVILHADQS-LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 + D V V++ +Q+ + V + G G+PV+IH EEG+ E+I L + Sbjct: 92 AADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVPEMIFGHLLTSSNY 151 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGK 158 + + +GG +G G + N S + + Y FEN + V+ C K Sbjct: 152 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVITKCNK 211 Query: 159 RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG-VEITFKDEINNTEQRW-CYQ 216 T V F PD F+ + ++ + G + + K E+N + + Sbjct: 212 SENWTKVTFKPDLKKFNMTELE-DDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVKSFT 270 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 D ++ YL+ A P + W + G+ S+VN I T++G Sbjct: 271 DYVDLYLSAANKSRTEDPLPRLT-----EKVNDRWEVCVSLSEGQFQQVSFVNSIATIKG 325 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 GTHV+ + + N + + A ++ + ++ + +P F QTKE Sbjct: 326 GTHVDYVTSQIT---NHIVAAVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKET 382 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA 396 L+ RQ + + + F+ + ++ LL A + ++ + ++ Sbjct: 383 LTLRQSSFGSKCELSEDFLKKVGKSGVVENLL-SWADFKQNKDLKKSDGAKTGRVL--VE 439 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSD 453 A+ ++ L L EGDSA A R Y + PL+GK+LN E S+ Sbjct: 440 KLDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLLNVREASTT 499 Query: 454 EVLASQEVHDISVAIGI--DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 ++ ++E+ ++ +G+ + ++++ LRYG++ I+ D D DG HI LL + Sbjct: 500 QITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLINFIHSFWP 559 Query: 512 ALVKHG-HVYVALPPLYRIDLG--KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGE 568 +L++ + + P+ + K+V + E E E LK +++ +KGLG Sbjct: 560 SLLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKESLKGNATGWDIKYYKGLGT 619 Query: 569 MNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEI 628 + +E + + + D++D +++ +KK+ E R+NWL + Sbjct: 620 STAEEGKEYFSNLGLHKKDFVWEDEQDG----EAIELAFSKKKIEARKNWLSSYVPGNHL 675 Query: 629 E 629 + Sbjct: 676 D 676 >UniRef50_Q9FAX1 DNA gyrase subunit B (Fragment) n=60 Tax=Bacteria RepID=GYRB_FLEEL Length = 478 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 163/481 (33%), Positives = 269/481 (55%), Gaps = 21/481 (4%) Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN 160 Y+ SGGLHGVG+S VNALS + V R+G+V+ + G ++VVG + Sbjct: 1 DKDTYKVSGGLHGVGVSCVNALSSLLVATVHREGKVFQQKYSTGNPQGAVEVVGQSDR-- 58 Query: 161 TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE------QRWC 214 TGT+++F PD T F + + ++ L+ + L G+ +T D E + + Sbjct: 59 TGTTIYFEPDATIFATTEYKYETVSKRLRELSYLNKGIRLTLTDLRETDEQGRHLYEEFF 118 Query: 215 YQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTM 274 + GL +++ + L P V+ AL++ E + SYVN I T Sbjct: 119 SEGGLKEFVEHLDSTRQPLLPAPIHVEKTDGDIPVEVALIYNNSYSENVF-SYVNNINTH 177 Query: 275 QGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQT 333 +GGTHV+G R+ L ++ + + +L + V+++ +D + V+S+K+ +PQF GQT Sbjct: 178 EGGTHVSGFRRALTRTLKSYADKSGMLEKAKVEITGDDFREGLTAVISIKVAEPQFEGQT 237 Query: 334 KERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI---SSAQRRMRAAKKVVRKK 390 K +L + V V + +L +N + A+L+ + I + Q +A + V RK Sbjct: 238 KTKLGNSDAIGAVDNAVSEILGYYLEENPREAKLIIQKVILAAQARQAARKAREMVQRKN 297 Query: 391 LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV 450 + G +LPGKLADC+ + R EL+LVEGDSAGGSAKQ RDR +QAI+PL+GKILN + Sbjct: 298 VMGGTSLPGKLADCSDTNPERCELYLVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKA 357 Query: 451 SSDEVLASQEVHDISVAIGIDPDSD------DLSQLRYGKICILADADSDGLHIATLLCA 504 ++ ++E+ ++ A+G+ ++ +L++LRY KI I+ DAD DG HI TL+ Sbjct: 358 QEYKIYDNEEIKNMITAMGVTFGTEEDSKALNLTKLRYHKIIIMTDADVDGSHIRTLILT 417 Query: 505 LFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQL--KRKKGKPNVQR 562 F ++ R L++ G++YVALPPLY + GKE YA ++ E++ ++ ++ + K+ +QR Sbjct: 418 FFFRYMRELIEQGYLYVALPPLYIVKKGKEERYAWSDAERDAIIREIAPEGKEDSVGIQR 477 Query: 563 F 563 + Sbjct: 478 Y 478 >UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group RepID=TOP2_YEAST Length = 1428 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 140/668 (20%), Positives = 269/668 (40%), Gaps = 57/668 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 +D + ++ LE + +RP Y + + E++ Sbjct: 9 SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEIL 68 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + KR+DV +HA+ ++EV +DG+G+P++IH +E + E+I L Sbjct: 69 VNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 128 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR--RDGQVYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S + GQ Y +EN + + + Sbjct: 129 NYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY 188 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-QRWCY 215 K + T V F PD T F L V++ + G +N + + Sbjct: 189 KKGPSYTKVTFKPDLTRFGMKELDNDIL-GVMRRRVYDINGSVRDINVYLNGKSLKIRNF 247 Query: 216 QDGLNDYLAEA-----VNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNL 270 ++ + YL ++ K I + W + + S+VN Sbjct: 248 KNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDISFQQISFVNS 307 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFA 330 I T GGTHVN + ++ + + + I + ++ +++P F Sbjct: 308 IATTMGGTHVNYITDQIVKK----ISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFT 363 Query: 331 GQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKK 390 QTKE+L++R + +I + + A + E+A ++ + ++ + + + Sbjct: 364 SQTKEQLTTRVKDFGSRCEIPLEYINKIMK-TDLATRMFEIADANEENALKKSDGTRKSR 422 Query: 391 LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNT 447 +T+ P L ++ + L L EGDSA A R+Y PL+GK+LN Sbjct: 423 ITNYPKLED-ANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNV 481 Query: 448 WEVSSDEVLASQEVHDISVAIGIDP--DSDDLSQLRYGKICILADADSDGLHIATLLCAL 505 E S+D++L + E+ I +G+ +D LRYG + I+ D D DG HI L+ Sbjct: 482 REASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINF 541 Query: 506 FVKHFRALVK-HGHVYVALPPLYRI---DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQ 561 F L+ G + + P+ ++ K + E E+ + K + Sbjct: 542 LESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREE-ESHKFTWKQK 600 Query: 562 RFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 +KGLG ++RE + + + ++ D +D+ +KK+++DR+ WL++ Sbjct: 601 YYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGND----KDYIDLAFSKKKADDRKEWLRQ 656 Query: 622 KGDMAEIE 629 ++ Sbjct: 657 YEPGTVLD 664 >UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KAQ6_9ALVE Length = 1579 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 146/672 (21%), Positives = 271/672 (40%), Gaps = 62/672 (9%) Query: 10 IEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVIDNS 43 + +T +E + RP Y + + E++ N+ Sbjct: 19 YKKMTQIEHILARPDTYVGSLEHQTERMWVWESETGHIVQKQITFCPGLYKIFDEILVNA 78 Query: 44 VDE--ALAGHAKRVDVILHA-DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 D H + V + A + ++V ++G+G+P+ IH E V EL+ L + Sbjct: 79 ADNLQRDPKHMNTIKVDIDAENGFIKVYNNGKGLPIQIHKEHHVYVPELVFGHLLTSDNY 138 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRV--EVNVRRDGQVYNIAFENGEKVQDLQVVGTCGK 158 +K + +GG +G G + N SK+ R ++Y FE + + V+ K Sbjct: 139 DDKEKKVTGGRNGYGAKLSNIFSKKFLITTADRTRKKLYKQQFEKSMQKKKEPVITDYDK 198 Query: 159 RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRW---CY 215 + T V FWPD F + ++ + + G + K ++ +R + Sbjct: 199 ED-FTCVQFWPDLEKFGMTHLDAD-IVSLMSKRVIDVAGTSASKKCKVYLNGKRVPISSF 256 Query: 216 QDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLW---------LPEGGELLTES 266 +D YL P + EK N V + W GG+ S Sbjct: 257 KDYAELYLTGEWVDAPKIYEKVARANVYVSCGHVQVSDRWEVLVTLSDPAGGGGQFQQVS 316 Query: 267 YVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQD 326 + N I T++GGTHVN + + +++A+ + + +N G++L + + ++ +++ Sbjct: 317 FANSINTVKGGTHVNHVAEQIVNAVLKKAQTKN--KGGMELKPFQVKNHMWLFVNALIEN 374 Query: 327 PQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAE---MAISSAQRRMRAA 383 P F QTKE L+ + V+ + + + + +++ ++ Q +++ Sbjct: 375 PTFDSQTKETLTLKVAKFGSKCVLSEGTMKKVLSSGIVDQVVNWAKFKQTATLQSKIKVG 434 Query: 384 KKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPL 440 + ++ P L D + +R L L EGDSA A R+ + PL Sbjct: 435 GTGGQTRIFGVPKLED-ANDAGGRYSDRCTLILTEGDSAKALAVAGLGVIGRDKYGVFPL 493 Query: 441 KGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHI 498 +GK+LN E S + + ++E+ I IG++P D + LRYG I ++ D D DG HI Sbjct: 494 RGKVLNVREASYKQTVDNKEIQAILKIIGLEPRKAYDGVKGLRYGSIMVMTDQDLDGSHI 553 Query: 499 ATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGK 557 LL L + L++ G + + P+ + G+ T E E KG Sbjct: 554 KGLLINLVHHWWPGLLQTRGFMKEFVTPIVKCVKGRRELSFFTLTEYEEWKRNNNDGKG- 612 Query: 558 PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRN 617 ++ +KGLG + ++ + L D +D +DM KKR++DR+ Sbjct: 613 WKIKYYKGLGTSTSKEAQQYFSQISKHSLSFDYRDGDDG----EAIDMAFNKKRADDRKE 668 Query: 618 WLQEKGDMAEIE 629 W+ D ++ Sbjct: 669 WINGYADGDCVD 680 >UniRef50_A3DC64 DNA topoisomerase (ATP-hydrolyzing) n=11 Tax=Bacteria RepID=A3DC64_CLOTH Length = 661 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 190/653 (29%), Positives = 323/653 (49%), Gaps = 37/653 (5%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y +I+ L G E VR RP + + H E++ NS+DEA G K ++V Sbjct: 9 AERYGNTSIKSLKGAERVRLRPAVIFGSDGIEGCQHSFFEILSNSIDEAREGFGKVIEVT 68 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK---NYQFSGGLHGVG 115 D+S+ V D GRG+P+D + E EL+ C L+AGGK+ N NY+FS GL+G+G Sbjct: 69 RFKDRSIMVKDYGRGIPLDYNENEKRYNWELVFCELYAGGKYKNNSGENYEFSLGLNGLG 128 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 S+ ++V V RDG Y++ FE GE V L+ +TGT + + PD F Sbjct: 129 SCATQYSSEYMDVTVFRDGMRYDLHFEKGENVGGLKK-QKWDYESTGTIIKWRPDLEVFT 187 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 + T VL+ +AV+ G++ DE ++ +CY++G+ DY+ E V+G + Sbjct: 188 DINIPLEYYTEVLRKQAVVNAGLKFILYDEESDRVFEYCYENGIVDYIKE-VSGDKAFTD 246 Query: 236 KPFIGNFAGDTEAVDWA-------LLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288 + + D + + L E Y N GG ++ + Sbjct: 247 IQYYETSTRGRDREDKPEYKLKMQIAFCFNNEVNLLEYYHNSSFLEYGGAPDKAVKNAFV 306 Query: 289 DAMREFCEYRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 + +F + + + +++ +DI D V + + QTK+ ++++ ++ Sbjct: 307 YVIDKFLKSQGKYNKDESRITFQDIQDSLILVSNSFSTITSYENQTKKSITNKFIQEAMT 366 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT-----SGPALPGKLA 402 +K+ ++ +N + E + + + R A K V K K Sbjct: 367 EFLKEKLEVYFIENKVECTKILEQVLVNKRSRETAEKTRVNIKKKLSGNVDISNRVKKFV 426 Query: 403 DCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVH 462 DC ++D+N+ E+++VEGDSA GS K ARD E+QAI+P++GKILN + D + ++ + Sbjct: 427 DCRSKDVNKREIYIVEGDSALGSCKLARDAEFQAIIPVRGKILNCLKADYDSIFKNEIIV 486 Query: 463 DISVAIGIDPD----------SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRA 512 D+ +G + + DL+ LR+ KI I DAD DG I TL+ A+ + Sbjct: 487 DLLKVLGCGVEIKSKHNRELSTFDLNNLRWSKIIICTDADVDGYQIRTLILAMLYRLVPT 546 Query: 513 LVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPM 572 L++ G V++A PL+ I + Y+A T++EK ++ +L KGK + R KGLGE +P Sbjct: 547 LIQVGKVFIAESPLFEIRTKDKTYFAYTDKEKNEIVSKL---KGKYTILRSKGLGENDPD 603 Query: 573 QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 + +TT++P TRRL+Q+ D D ++T+ D+ L R+++++E G Sbjct: 604 MMWQTTMNPETRRLIQVVPD--DIKKTEEFFDLFLGDNL-PGRKSYIEEHGHK 653 >UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEE2_VANPO Length = 1404 Score = 514 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 128/667 (19%), Positives = 266/667 (39%), Gaps = 56/667 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 ++ + ++ LE + +RP Y + + E++ Sbjct: 9 SERYQKISQLEHILKRPDTYIGSVEVQEQEQWIYNVENESLEEKQVKIVPGLFKIFDEIL 68 Query: 41 DNSVDEALAGH-AKRVDVILHADQS-LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + KR+DV ++ +++ +E+ +DG+G+P++IH +E + ELI L Sbjct: 69 VNAADNKVRDPSMKRIDVNINPEENLIEIKNDGKGIPIEIHDKEKIYIPELIFGHLLTSS 128 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S + G+ Y +E+ + + Sbjct: 129 NYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADPSTGKKYIQRWEDNMNTCHPPKITSY 188 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-QRWCY 215 + T V F PD F + + V++ + G ++ + + Sbjct: 189 KNSTSYTKVSFKPDLKRFKMEKLD-DDVVGVMRRRVYDINGSVRDINVYLDGKPLKIRNF 247 Query: 216 QDGLNDYLAEAVNGLPTLP----EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLI 271 + + YL T E + W + + S+VN I Sbjct: 248 KSYVELYLKSLEKKKLTESGESTEDLQTPTILYEKVNDRWEVAFSSSEASFQQVSFVNSI 307 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T GGTHVN + ++ + E + ++ I + ++ +++P F Sbjct: 308 ATTSGGTHVNYITDQIVKKVSEAIKKKSKKTVK----PFQIKNNMFIFINSLIENPAFTS 363 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL 391 QTKE+L++R + + FI + + + + ++A + Q ++ + + ++ Sbjct: 364 QTKEQLTTRVRDFGSKCELSNVFINKIMK-TDFFDKILDVANQNDQNALKKSDGTRKIRI 422 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTW 448 T P L ++ ++ L L EGDSA A R+Y PL+GK+LN Sbjct: 423 TEYPKLED-ANKAGTKEGHKCTLILTEGDSALSQAVLGLTVVGRDYFGCYPLRGKMLNVR 481 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALF 506 E S+D++ + E+ I +G+ +D LRYG + I+ D D DG HI L+ Sbjct: 482 EASADQINKNAEIEAIKKIMGLQHKKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFL 541 Query: 507 VKHFRALVKHG-HVYVALPPLYRIDLG---KEVYYALTEEEKEGVLEQLKRKKGKPNVQR 562 F L+ + + P+ ++ + K+ + E ++ + + Sbjct: 542 ETSFPGLLNIPEFLQEFITPIIKVKISKPRKQTIQFYNIPDYEKWRDEEGQNC-TWKHKY 600 Query: 563 FKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 +KGLG + RE D + + + ++D ++++ +KK+++DR+ WL++ Sbjct: 601 YKGLGTSLGQEFREYFADLDRHLKIFHQLQEDD----KKLIELAFSKKKADDRKEWLRQY 656 Query: 623 GDMAEIE 629 ++ Sbjct: 657 EPGTVLD 663 >UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermophila RepID=Q6PUA3_TETTH Length = 1662 Score = 511 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 133/664 (20%), Positives = 266/664 (40%), Gaps = 62/664 (9%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTR--------------------------PNHLGQEVI 40 + T LE + RP Y + + E++ Sbjct: 4 ETTYQKKTQLEHILLRPDTYVGSNEYQDEQMWVLADDGSSFENRQIKYVPALYKIFDEIL 63 Query: 41 DNSVDEALAG-HAKRVDVILHA-DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D KR+DVI+ + + +++DG+G+PV IH E + ELI L Sbjct: 64 VNAADNYQRDKRMKRLDVIIDQKNNCISILNDGKGIPVQIHKEYNIYVPELIFGHLLTSS 123 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTC 156 ++++ + GG +G G + N S + V ++ + + + + Q + + Sbjct: 124 NYNDEEKKVVGGRNGFGAKLTNIFSTKFIVESADSKNKKKFQMTWTKNMSEQSEPQISSY 183 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG-----VEITFKDEINNTEQ 211 + + T + F+PD F + ++K + G V+++ E + Sbjct: 184 TESD-YTKITFYPDLKKFHMKELEKD-IVDLMKKRVYDMAGVIGGSVKVSLNGERISISS 241 Query: 212 RWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLI 271 +DY + + + T W ++ G+ S+VN I Sbjct: 242 -------FSDYCDFYLKNQG---AEVIKVSDNKGTNNQRWEVIASLSEGQFQQVSFVNSI 291 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T +GGTHVN + + + + E + + + + + + ++ +++P F Sbjct: 292 CTSKGGTHVNYITDQITEKLMETLKKK---EKSLNIKQFQVKSHLWIFVNCLIENPSFDT 348 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL 391 QTKE L+ RQ + + V + FI L ++ + A + Q +M ++ Sbjct: 349 QTKETLTLRQQSFGSTCEVSEKFIKELLKS-NIINHILLQARAKEQAKMAKTLSAKKQSR 407 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQA---RDREYQAIMPLKGKILNTW 448 G D ++ L + EGDSA A R+ + PLKGK+LN Sbjct: 408 LLGVPKLEDANDAGTRNAESCTLIITEGDSAKALAMSGIEVVGRDKFGVFPLKGKMLNVR 467 Query: 449 EVSSDEVLASQEVHDISVAIG--IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALF 506 + +S ++ + E+ +I +G ++ + D++ LRYG I I+AD D DG HI L Sbjct: 468 DSTSKQITENLEIQNIIKVMGMKLNTNYDNVKSLRYGSIMIMADQDHDGSHIKGLFINFI 527 Query: 507 VKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKG 565 + +L + G + + P+ ++ G + + ++ + + ++ +KG Sbjct: 528 QNFWPSLFQMDGFLKEFITPIVKVRKGNQSISFFSIQDFKRWKSTCPNQH-LWKIKYYKG 586 Query: 566 LGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 LG + +E + N + ++ + +DD+ +D+ KKR+EDR+ WL + Sbjct: 587 LGTSTDQEAQEYFGNIN-KHVISFKYNGKDDEDA---IDLAFNKKRAEDRKKWLVKYDPE 642 Query: 626 AEIE 629 ++ Sbjct: 643 ENVD 646 >UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP10_ENTDI Length = 1351 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 141/666 (21%), Positives = 262/666 (39%), Gaps = 69/666 (10%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT-------------------------------RPNHL 35 D L+ E + RP Y + + Sbjct: 9 EDIYVKLSHKEQILTRPDTYIGSIERNDEQVWLYEEPTEQYEEGRMVQKVISLAPGLFKI 68 Query: 36 GQEVIDNSVDEALAGH-AKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRL 94 E++ N+ D + V + S+ V ++G+G+P++IH +E + ELI L Sbjct: 69 YDEILVNASDNFQRDPKMTTIKVTIEG-NSITVYNNGKGIPIEIHKKENIYIPELIFGHL 127 Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG 154 + + + + +GG +G G + N S + + ++Y ++N ++ + Sbjct: 128 LTSSNYKDDDKKVTGGRNGYGAKLANIFSTKFSIETCDGKKIYKQTWKNNMSDKEEPEIE 187 Query: 155 TCGKRNTGTSVHFWPDETFFDSPRFSVS---RLTHVLKAKAVLCPGVEITFKDEINNTEQ 211 + K T V F PD F L A PG I + Sbjct: 188 SVKKVEEYTKVTFTPDYKRFQMKGMEDDARRLLIRRAYDIAGCNPGKRIWING------K 241 Query: 212 RWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLI 271 + C+++ +Y V P + EK W + GE + S+VN I Sbjct: 242 KVCFKN-FAEYARMYVGDEPIVSEKA----------GERWDICVCASKGEPMQISFVNSI 290 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T GGTHV+ + + + E + + + +G ++ I + ++ +++P F Sbjct: 291 NTSHGGTHVDYVTGLMTKYLAE--KMKKLNKKGAEIKPFQIKNHLFVFVNSLIENPAFDS 348 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL 391 QTKE L ++ + D F L + ++LA AI + + + ++ Sbjct: 349 QTKETLKTQVNKFGSKPTLSDKFFKELGKLSVVDDILA-WAIKKGEMDLNKSGGKKTARI 407 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTW 448 T P L ++ N L L EGDSA A R+Y + PL+GK LN Sbjct: 408 TGIPKL-DDANKAGTKEGNLCTLILTEGDSAKTLAVSGLSVVGRDYYGVFPLRGKPLNAR 466 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALF 506 E++ +V +QE +I+ +G+ +++LRYG + I+AD D DG HI LL F Sbjct: 467 EIAPSKVKENQEFENIAKIMGLRYGKVYSSINELRYGSVMIMADQDFDGSHIKGLLINYF 526 Query: 507 VKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKK--GKPNVQRF 563 + +L+K + + P+ ++ GK+ T + + ++ K ++ + Sbjct: 527 HTFWPSLLKIDNFLVEFITPIVKVKRGKQEISFFTLPQFNEWKDARIQEGQLKKWEIKYY 586 Query: 564 KGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG 623 KGLG + D +T ++ D +D ++D+ +KR++DR+ WL+ Sbjct: 587 KGLGTSKDSDAKAYFSDLDTHKIKFAY----DGASSDEVIDLAFNRKRADDRKEWLKGYD 642 Query: 624 DMAEIE 629 ++ Sbjct: 643 PNTYLD 648 >UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalum RepID=Q7YZS4_PHYPO Length = 1498 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 142/684 (20%), Positives = 259/684 (37%), Gaps = 83/684 (12%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + + T +E + RP Y + + E++ Sbjct: 320 EEMYQKKTPVEHILLRPDSYIGSIQHTHQEQWVINESDGRMEYRECKYVPGLYKIFDEIL 379 Query: 41 DNSVDEALAGHAKRV-DVILHA-DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D H V V + + + ++++G+G+PV +H +E V EL+L L G Sbjct: 380 VNAADNKQRDHKMNVLQVTIDPANNIISILNNGKGIPVQLHEKEKVYVPELVLGTLLTGS 439 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTC 156 F +K + +GG +G G + N S EV ++Y ++ + + Sbjct: 440 NFDDKIAKVTGGRNGFGAKLTNIFSTSFEVETADAARHKLYRQSWSENMSQRTEPSIEHY 499 Query: 157 G--KRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWC 214 K + T + F PD F+ + ++K + + + +N Sbjct: 500 SGPKGSDYTRITFSPDLAKFNMQSLENGDILRLMKRRIYDMAACLPSVQVSLNGIPIPSG 559 Query: 215 YQDGLNDY---------------------------LAEAVNGLPTLPEKPFIGNFAGDTE 247 + ++ Y E + PF+ D Sbjct: 560 FDAYVSMYQPKDAQPLSNAEDGAQNEQEEHGEGAEGTEGEQPGKQPTKHPFVYAKINDRW 619 Query: 248 AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKL 307 V L L G+ S+VN I T +GGTHVN + + ++ A+ E + + Sbjct: 620 QVAVGLTML--EGQFSQVSFVNSIATSKGGTHVNHVAEQVVKAIHERITKKYP---DLDT 674 Query: 308 SAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAEL 367 I + ++ +++P F QTK+ L++R + + D+F+ + V + Sbjct: 675 RPAHIRNNLFVFVNCLIENPAFDSQTKDTLTTRPAHFGSACDLPDSFLKRIVAQVPIIDK 734 Query: 368 LAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD---LNRTELFLVEGDSAGG 424 + A + + K +G KL D + L + EGDSA Sbjct: 735 VVGWAKLKQMAEFEKS-STRKPKDKAGIKAIPKLDDANFAGGPRSSECTLIITEGDSAKS 793 Query: 425 SAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-----DD 476 A R+ + PL+GK+LN + S V+ ++E+ + + +G+ P +D Sbjct: 794 LAVSGLSIVGRDKYGVFPLRGKLLNVRDQSPKRVMENEELKHLRMILGLTPGKEYRTAED 853 Query: 477 LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH-GHVYVALPPLYRIDLGKEV 535 ++LRYGK+ ++ D D DG HI L ++ + +L++ G + + P+ + G EV Sbjct: 854 RAELRYGKVMLMTDQDHDGSHIKGLFVNFMIQFWPSLLEQDGFLEQFITPIVKAFHGAEV 913 Query: 536 YYALTEEEKEGVLEQLKRKK-GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDE 594 T E E QL + K ++ +KGLG + + RE D R I+ + Sbjct: 914 QTFYTTSEYEIWRSQLPDDQLSKWRIKYYKGLGTSSSQEAREYFKDLERHR-----IEFK 968 Query: 595 DDQRTDAMMDMLLAKKRSEDRRNW 618 D T MDM K + R+ W Sbjct: 969 WDDTTTTKMDMAFGKDETAQRKTW 992 >UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyostelium discoideum RepID=TOP2_DICDI Length = 1521 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 139/653 (21%), Positives = 260/653 (39%), Gaps = 58/653 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT------------------------RPNHLGQEVIDN 42 + + L+ + RP Y +T + E++ N Sbjct: 104 EEIYQKKELLDQILLRPDTYIGSTERQEEELWVWEDKRMVHRKVSFVPGIYKIFDEILVN 163 Query: 43 SVDEALA-GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 + D G+ K + V++ + + V +DG G+P+ +H E + ELI L + Sbjct: 164 AADNKQREGNMKFIKVVIDREKGFISVTNDGAGIPIQVHSEHKIYIPELIFGNLLTSSHY 223 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCGK 158 + + +GG +G G + N S + V + ++Y F N + ++ + + Sbjct: 224 DDSEKRLTGGRNGFGAKLANIFSTKFIVECADSKSKKLYKQTFTNNMRSKEDPKITSYQN 283 Query: 159 RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ-RWCYQD 217 + T + F+P+ F F L +L + G T K +N+ E ++ Sbjct: 284 KTDYTKITFYPELDRFGMVEFD-DDLVALLSKRVYDIAGCNPTLKVSLNDEELGIRSFEK 342 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 +N Y + N EK ++ + A+ L + + S+VN I T++GG Sbjct: 343 YINLYFPDEENAPKVYYEKV--------SDRWELAVT-LSKESQFNQVSFVNSICTVKGG 393 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 THV ++ A++E +N + I + + ++ +++P F QTKE L Sbjct: 394 THVTHALSNIVTAIQEQVNKKN--KGSADIKPAFIKNHLSVFVNCLIENPHFDSQTKETL 451 Query: 338 SSRQCAAFVSGVVKDAFILW-LNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA 396 +S+ + + FI L+ + E A Q ++ + KK Sbjct: 452 TSKISSFGSRCEPSEKFIKRVLDSKSGIVASILEFAQFKDQSALKRSTSSGGKKGKVSIP 511 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQA---RDREYQAIMPLKGKILNTWEVSSD 453 L L EGDSA A +++ PLKGK+LN + S Sbjct: 512 KLDDANLAGGTKSEDCTLILTEGDSAKSLATAGISVVGKDHYGAFPLKGKLLNVRDQS-T 570 Query: 454 EVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 +V+ + E+++I +G+ + LS LRYG + I+ D D DG HI L+ + + Sbjct: 571 KVINNDEINNIVTILGLKYGKVYETLSDLRYGHLMIMTDQDHDGSHIKGLIINMVHHFWP 630 Query: 512 ALVK-HGHVYVALPPLYRIDLGKEV-YYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEM 569 L++ G + + P+ ++ + T E E + +V+ +KGLG Sbjct: 631 TLLRMPGFLVEFITPIVKVFKNNQKPISFYTMPEFLKWRETNDK---GWDVKYYKGLGTS 687 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 P + +E D ID E D+ + +++ +K R++DR+ W+ E Sbjct: 688 TPGEGKEYFSDLERH-----KIDFEWDEGANDNIELAFSKSRADDRKKWMAEH 735 >UniRef50_Q9FAX2 DNA gyrase subunit B (Fragment) n=166 Tax=root RepID=GYRB_FLEJA Length = 481 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 164/484 (33%), Positives = 260/484 (53%), Gaps = 24/484 (4%) Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN 160 Y+ SGGLHGVG+S VNALS + V V R+G+++ + G ++ +G Sbjct: 1 DKNTYKVSGGLHGVGVSCVNALSTVLHVTVHREGKIFEQEYHRGVPQYAVREIGATTDTG 60 Query: 161 TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE------QRWC 214 T + HF PD F ++ L L+ A L + IT DE E + + Sbjct: 61 T--TTHFKPDGEIFTETSYNREILAGRLRELAYLNRKIRITLTDEREKDEQGNVLSEPFY 118 Query: 215 YQDGLNDYLAEAVNG---LPTLPEKPFIG-NFAGDTEAVDWALLWLPEGGELLTESYVNL 270 + G+ +++ LP FI + A AV+ +L + E + SYVN Sbjct: 119 SEGGIMEFVQMLDRNGRRNSLLPAPIFIEAHDAPSNVAVEVSLQYNDSFSENIF-SYVNN 177 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQF 329 I T++GGTHV G R+ + + + + + + ++++ +D + + ++SVK+ +PQF Sbjct: 178 INTIEGGTHVAGFRRAITRVFKTYGDRNKLFEKSKIEVTGDDFREGLSAIVSVKVPEPQF 237 Query: 330 AGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---V 386 GQTK +L + V V D +L ++ + A + + +AQ R A K V Sbjct: 238 EGQTKTKLGNSDVMGVVDSAVADVLNAYLEEHPKEARTVINKVVLAAQAREAARKARQLV 297 Query: 387 VRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN 446 RK + +G LPGKLADC+ D + EL+LVEGDSAGG+AKQ R+R +QAI+PL+GKILN Sbjct: 298 QRKSVLTGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILN 357 Query: 447 TWEVSSDEVLASQEVHDISVAIGIDPDSD------DLSQLRYGKICILADADSDGLHIAT 500 + ++ ++E+ +I A+G+ ++ +LS+LRY K+ I+ DAD DG HIAT Sbjct: 358 VEKAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIAT 417 Query: 501 LLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKK-GKPN 559 L+ ++ +ALV+ G+VY+A PPLY + GKE YA TEE+++ + L K Sbjct: 418 LILTFVFRYMKALVEQGYVYIAQPPLYLVKKGKEQIYAWTEEQRKAAVATLAGGKEDSVT 477 Query: 560 VQRF 563 +QR+ Sbjct: 478 IQRY 481 >UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae RepID=A4HGT2_LEIBR Length = 1501 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 140/651 (21%), Positives = 257/651 (39%), Gaps = 61/651 (9%) Query: 10 IEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVIDNS 43 + T E + RP MY T + E++ N+ Sbjct: 9 YQKKTQHEHILTRPDMYIGTIEPVTDDIWVYDDAENIMKQRKCTWTPGLYKIFDEILVNA 68 Query: 44 VDEALAGH-AKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN 102 D + + V + + + V ++G G+P+ H E + E+I L + + Sbjct: 69 ADNKVRDPLGQTVIRVWMTEDYVRVYNNGEGIPIQRHREHDLWVPEMIFGHLLTSSNYDD 128 Query: 103 KNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCGKRN 160 + + +GG +G G + N SK+ EV R + + + + N D ++ C + Sbjct: 129 EEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWTNNMLQHDDPIIVPC-ESA 187 Query: 161 TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVE-ITFKDEINNTEQRWCYQDGL 219 T V F+PD F +FS L ++K + G T K +N+ Sbjct: 188 DYTMVTFYPDFARFHVDKFSEDILL-MMKRRVYDVAGCTDKTLKCFLNDERIA---CTTF 243 Query: 220 NDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTH 279 +Y+ PT+ E+ +++ + W L S+VN I T +GGTH Sbjct: 244 PEYVDLY----PTMGEERKAASYSRAND--RWELCVRVSNIGPQQVSFVNSIATTRGGTH 297 Query: 280 VNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS 339 V + ++ + E + + + + I ++ + +P F QTKE L++ Sbjct: 298 VKYIMDQIVTKVVEQAKKKKKTD----VKSHMIRPHIFLFVNCLIDNPSFDSQTKETLNT 353 Query: 340 RQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPG 399 + + + ++ + ++ N E EMA S + M + K +K G Sbjct: 354 VKSKFGSTCDLPNSIVDYI-MNSGIVERSVEMANSKIAKEMASKIKSSDRKQIMGIPKLD 412 Query: 400 KLADCTAQDLNRTELFLVEGDSAGGSAKQA---RDREYQAIMPLKGKILNTWEVSSDEVL 456 + + +R L L EGDSA +DR+Y + PL+GK LN E S ++ Sbjct: 413 DANEAGGKHGHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVREASLKKLA 472 Query: 457 ASQEVHDISVAIGIDP--DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV 514 A +E+ + +G+D ++ LRYG + I++D D DG HI LL + L+ Sbjct: 473 ACEEIQCVMKIMGLDIRQKYENTDGLRYGHLMIMSDQDHDGSHIKGLLINFIHCFWPNLL 532 Query: 515 K-HGHVYVALPPLYRID-LGK----EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGE 568 + G + + P+ + G+ + + + + + ++ +KGLG Sbjct: 533 RVPGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLSNYQIRYYKGLGT 592 Query: 569 MNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + RE + + RL + E DQ + + M K R EDR+ W+ Sbjct: 593 SGAEEGREYFENIDRHRLSFV----EQDQSEEDRIVMAFGKDRVEDRKEWI 639 >UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii RepID=B9PK68_TOXGO Length = 1688 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 141/752 (18%), Positives = 266/752 (35%), Gaps = 149/752 (19%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPN--------------------------HLGQEVI 40 + + LE + RP Y +T + + E++ Sbjct: 38 EQRYQKKSQLEHILLRPDTYIGSTEVHTQALWVMEEGQETMVYKTINYVPGLYKIVDEIL 97 Query: 41 DNSVD--------------EALAGHAKRVDVILH-ADQSLEVIDDGRGMPVDIHPEEGVP 85 N+ D + A + + ++ A + + +DG G+PV IH E V Sbjct: 98 VNAADVKAREGEEQKGKPLKPGARRMSAIKIDINKASGRISIWNDGEGIPVAIHQEHKVY 157 Query: 86 AVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR--RDGQVYNIAFEN 143 E+I +L + + + +GG +G G + N S+ V + + + + Sbjct: 158 VPEMIFGQLLTSDNYDDSECRVTGGRNGYGAKLTNIFSREFTVECADGERKKKFKMTWTK 217 Query: 144 GEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG---VEI 200 + + + + + F PD F F L+ +L+ +A G V++ Sbjct: 218 NMEQKSESEISSYNG-TDYVKISFIPDFAKFGMTGFDDDSLS-LLRKRAYDLAGTSGVKV 275 Query: 201 TFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDW--------- 251 + + + Y+ + G + EKP D DW Sbjct: 276 FLNGTRIDI-------NSFSQYVDLYLGGRKS--EKPSKEKEEFDESDDDWDEGPKRKKA 326 Query: 252 -----------------------------------ALLWLPEGGELLTESYVNLIPTMQG 276 ++ +GG+ S+VN I T +G Sbjct: 327 AKKNGKKGELEDEEDVANGVEKKVIKIHDKQWRWEVVISSTDGGQFQQVSFVNSICTTKG 386 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 GTHV+ + + LL A+ + +N G+++ A + +S + +P F QTKE Sbjct: 387 GTHVSHVIEPLLAAIVKKANTKN--KGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKET 444 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAE-------------------------- 370 L+++ + D I + ++ ++ Sbjct: 445 LTTKPAKFGSKCTLADKTIGQVVKSSIVENVVLWAQTKQQSVRAFSLSLLDCWRRGALSV 504 Query: 371 -------MAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAG 423 +++M+ K R++L P L D + L L EGDSA Sbjct: 505 DRPVFRLFVFVELRKQMKVGKTKGRERLAGIPKLED-ANDAGGRHSQDCTLILTEGDSAK 563 Query: 424 GSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD--SDDLS 478 S R+ + PL+GK+LN + S ++ ++E+ +I +G+ + ++D Sbjct: 564 TSCLAGLSVVGRDRYGVFPLRGKLLNVRDASFKQLTENKEIQNILKIVGLQVNDRTEDTR 623 Query: 479 QLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYY 537 LRYG + I+ D D DG HI LL + ++ L+K G + P+ ++ Sbjct: 624 GLRYGSVMIMTDQDHDGSHIKGLLINMMHHYWPQLLKCRGFLKAFSTPIVKVSKNNVEKA 683 Query: 538 ALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQ 597 T E E ++ +KGLG + +E D + ++ + D Sbjct: 684 FYTIPEYEQWKRSCNTTG--WKIKYYKGLGTSTDREFKEYFNDLDKHQIDFVWSGQHDG- 740 Query: 598 RTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++DM KKR+EDR+ WLQ + ++ Sbjct: 741 ---ELIDMAFNKKRAEDRKRWLQSYQEGTFVD 769 >UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID=D1ZCL6_SORMA Length = 1915 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 138/661 (20%), Positives = 263/661 (39%), Gaps = 61/661 (9%) Query: 10 IEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVIDNS 43 + LT LE + +RP Y + + E++ N+ Sbjct: 130 YQKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQISFVPGLYKIFDEILVNA 189 Query: 44 VDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS 101 D + + V ++ + + V ++G+G+PV+IH E ELI L AG F Sbjct: 190 ADNSQRDSSMTFLKVSINRESGEISVENNGKGIPVEIHGTEKCYVPELIFGHLLAGSNFD 249 Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTCGKR 159 + + GG +G G + N S+ + + +G+ Y + + + T K Sbjct: 250 DNEKKTVGGRNGYGAKLTNIFSREFILECQDSVNGKRYKQTWTDNMSKMSTPKI-TSNKA 308 Query: 160 NTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGL 219 + F PD + F L +L + G K +N + ++ Sbjct: 309 ADFVRITFRPDFSKFGMADGIDDDLEALLYRRVYDMAGTVSGIKVWLNGEHLKLNFKTYC 368 Query: 220 NDYLAEAVNGLPTLPE-----KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTM 274 Y + + + +E W + + G S+VN I T Sbjct: 369 GLYAKAIAKERDEVADGEDVTPATVIFEQQRSEGKLWEVGFTVSDGSFQQVSFVNNIATT 428 Query: 275 QGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK 334 GG+HVN + +++ + + + + +G L ++ ++ ++ + +P F+ QTK Sbjct: 429 SGGSHVNYIADQIIEVLMKELQRKKG--KGHGLKTANVKNQFFIFINCLIDNPAFSSQTK 486 Query: 335 ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSG 394 E+L+++ + D F+ + Q+ +A + L A + + RK++++ Sbjct: 487 EQLTTKPARFGSKCQLGDQFLKKVRQS-EAIDNLLSFADKKRDKDLAKNDGSKRKRISND 545 Query: 395 PALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVS 451 + + L L EGDSA G A R D + PL+GK+LN + S Sbjct: 546 KLIE--ANYAGGKYSQECTLILTEGDSARGLAVAGRAILDPNRIGVFPLRGKMLNVRDAS 603 Query: 452 SDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKH 509 +D++L ++EV +I +G+ D LRYG + I+AD D DG HI LL F Sbjct: 604 ADQILKNKEVENIKKFLGLKHGKVYTDTKDLRYGHLMIMADQDLDGSHIKGLLINFFECQ 663 Query: 510 FRALVK-HGHVYVALPPLYRIDLG------KEVYYALTEEEKEGVLEQLKRKKGKPNVQR 562 F +L++ + P+ ++ G +++ T + E E K + + + Sbjct: 664 FPSLLRIPNFFQEFITPVVKVWQGPNPRKPQKLQGFFTLPQYEEWKESHKNELRRWKYKY 723 Query: 563 FKGLGEMNPM--QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 KGLG Q+ T L + + +T ++ M ++ +KK+++ R+ WL Sbjct: 724 LKGLGSSTTDDAQIYFTNLTKHLKEFDVMTREE------SEMFELAFSKKKADARKEWLA 777 Query: 621 E 621 + Sbjct: 778 K 778 >UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms RepID=TOP2_PENCH Length = 1587 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 131/654 (20%), Positives = 246/654 (37%), Gaps = 60/654 (9%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 ++ + LT LE + +RP Y +T + E++ Sbjct: 65 SEKYQKLTQLEHIIKRPDTYVGSTERTTQHMWVYSSESEGMEYREVSYVPGLYKIFDEIV 124 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + V + + + V ++GRG+P+++H +E + ELI L Sbjct: 125 VNAADNKQNDKNMDEIRVTIDRESGEISVWNNGRGIPIEMHSKEKMYVPELIFGHLLTSS 184 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR--RDGQVYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S + + R + Y + + Sbjct: 185 NYDDTQMKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTENMTKMGKAKITDA 244 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG---VEITFKDEINNTEQRW 213 + T V F PD F ++K + G V + Sbjct: 245 KGAD-YTKVTFKPDYAKFGMTGMD-DDFEALVKRRVYDLAGTAKVAVKLNGSRIPIRNFK 302 Query: 214 CYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPT 273 Y + + + + I + W + + G S+VN I Sbjct: 303 MYMEMYTKAIRRERGDMGPAGKNEIITC----SPDPRWEVGFAVSDGAFQQVSFVNSIAI 358 Query: 274 MQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQT 333 GGTHVN + + + E + +N G L I + ++ + +P F QT Sbjct: 359 TSGGTHVNYIADQICSKLAEQVKKKN--KNGATLKPAQIRNHIFIFVNALIVNPAFTSQT 416 Query: 334 KERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTS 393 KE+L+++Q V+++ F + + + + A A + ++ R + + Sbjct: 417 KEQLTTKQSQFGSKCVLEEDFYKKILK-TEVMTNILHFAQQKADQMLKKTDGGRRSR-MN 474 Query: 394 GPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEV 450 P L ++ + L L EGDSA G A R + + PL+GK+LN + Sbjct: 475 NPKLTD-ANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLLNVRDA 533 Query: 451 SSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVK 508 S D++ +QE+ +I IG+ + D LRYG + I D D DG HI LL Sbjct: 534 SFDQIAKNQEIQNIKNFIGLQHKKEYTDTRGLRYGHLMITTDQDHDGSHIKGLLINFLQA 593 Query: 509 HFRALVKHG-HVYVALPPLYRIDLGK-----EVYYALTEEEKEGVLEQLKRKKGKPNVQR 562 F +L+K + + P+ ++ G + T E E E+ ++G + Sbjct: 594 QFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWKEEHGHERG-WEHKY 652 Query: 563 FKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRR 616 +KGLG + D + T+ D + ++++ +KK++++R+ Sbjct: 653 YKGLGTSTTEDAQIYFRDLDRHLKEFHTMQDNEV----ELIELAFSKKKADERK 702 >UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=A8Q6X4_BRUMA Length = 1178 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 125/658 (18%), Positives = 258/658 (39%), Gaps = 57/658 (8%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTT---------------------------RPNHLGQEVI 40 + + LT L+ + RP Y T + E++ Sbjct: 63 EKYQRLTPLKHILYRPDSYIGPTFLSDEQPIYVYDDITKQILKKEARIVPGLLKIFDEIL 122 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + + + + ++ + ++GRG+PV+IHP EG+ +I L Sbjct: 123 VNAADNKRRDPQMTTIAINIDKERNTISIWNNGRGIPVEIHPREGIYVPTMIFGTLFTSS 182 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTC 156 + + + GG +G G + N S V ++ G + + N D ++ Sbjct: 183 NYDDSELKIVGGRNGFGAKLCNIFSTEFSVETCTKQSGLRFFQCWRNNMNDVDDPIISDA 242 Query: 157 G-KRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY 215 + T V F PD + F + +++ V G +N T+ Sbjct: 243 STNASDYTCVTFKPDLSKFKLSTLDEDTIQVMIRRI-VDIAGTLDGVNVFLNGTKIEVS- 300 Query: 216 QDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQ 275 G DY+ E + ++ + A+ G S+VN I T++ Sbjct: 301 --GFKDYVKLFSTYTGESVENSTVPSYCSVNDRWQIAVARSDTGY--NHISFVNNINTLK 356 Query: 276 GGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 GG HV+ + ++ ++ R + +SA I +R ++ +++P F Q+KE Sbjct: 357 GGRHVDYIVNQIVSRLKHEINQRYGCDKF--ISAHQIKNRLHIFVNSLIENPAFESQSKE 414 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGP 395 L++ + +V ++F ++ ++ + +Q+ + + + + L Sbjct: 415 YLTTSVKNFGSTCIVPESFYENFIKDSD---IIHHLLCDISQQHTTSLNRSMNRSLWDLS 471 Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSS 452 L AD ++ L + EGDSA A R+ + P++GK+ N + + Sbjct: 472 KLED-AADAGTKNGCNCTLIITEGDSAKALAVAGLAVIGRKQYGVFPIRGKLTNVRGMDA 530 Query: 453 DEVLASQEVHDISVAIGIDPDS-----DDLSQLRYGKICILADADSDGLHIATLLCALFV 507 + + E+ + +G+ + L LRYG++ I+ D D DG HI L+ Sbjct: 531 KMAVENAEISALVRILGLKFGENYSSHEKLKSLRYGRLLIMTDQDPDGSHIKGLIVNFLH 590 Query: 508 KHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLG 567 ++ +L+K +V + PL + G ++ + + E + K +++ +KGLG Sbjct: 591 VYWPSLLKANYVSYFITPLLKAKRGSDIKSFYSTADYEKWRAENPDSV-KYSIKYYKGLG 649 Query: 568 EMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 + + RE D + + D + +D +++ AK +++DR+ W+ E + Sbjct: 650 TSSAKEAREYFNDIERHTVNFIY----DGKISDESIELAFAKNKADDRKVWIAESSKL 703 >UniRef50_Q9HGH7 DNA topoisomerase 2 (Fragment) n=1 Tax=Pichia kudriavzevii RepID=Q9HGH7_ISSOR Length = 804 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 141/653 (21%), Positives = 259/653 (39%), Gaps = 69/653 (10%) Query: 31 RPNHLGQEVIDNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVE 88 + E++ N+ D + KR+DVI++ + + V +DG+G+P++IH +E + E Sbjct: 14 GLFKIFDEILVNAADNKIRDPSMKRIDVIINEEENVISVKNDGKGIPIEIHDKENIYIPE 73 Query: 89 LILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEK 146 LI L + + + +GG +G G + N S V+ G+ Y + N Sbjct: 74 LIFGNLLTSSNYDDDQKKVTGGRNGYGAKLCNIFSTEFTVHTADMSHGKEYTQVWRNNMS 133 Query: 147 VQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLC---PGVEITFK 203 + K+N T + F PD + F + L + LC G+ +T Sbjct: 134 EVGKPKILNFKKKNEFTEIIFKPDLSKFGMEKLDHDILGVFKRRVYDLCGSVRGIRVTLN 193 Query: 204 DEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGN---------------------- 241 E+ ++ + Y+ P P Sbjct: 194 GELLKINN---FKQYVELYVKAINKSKEERPHIPVKIETEDGTPLNGESEANTETSSTPE 250 Query: 242 ---------FAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 + W + + G S+VN I T GGTHV+ + L + Sbjct: 251 PSLNENLPTIVHEIINDRWEIAFCISDGSFNQVSFVNSIATTLGGTHVDDVANMLCGKIT 310 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV-VK 351 E + +N + + I + ++ +++P F QTKE L+++ + + Sbjct: 311 EQIKRKN---KKAIIKPFQIKSKMFLFINCLVENPAFTFQTKEYLTTQLSKFGGKRLELP 367 Query: 352 DAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411 + FI + N + + ++ ++A + ++ + ++T P L T + + Sbjct: 368 EKFIKKIL-NTGIIDEVLDIVQANADKALKKTDGAKKSRITGYPKLEDANKAGTREGY-K 425 Query: 412 TELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 L L EGDSA A Q R Y PL+GK+LN E S+D+++ + + I + Sbjct: 426 CTLILTEGDSAKSLAVQGLAVVGRNYYGCFPLRGKVLNVREASTDQIMKNGAIQAIKQIM 485 Query: 469 GIDPDS----DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVAL 523 G+ DD+ LRYG+I I+AD D DG HI LL F L++ + + Sbjct: 486 GLQHKKHYGPDDIKSLRYGRIMIMADQDHDGSHIKGLLINFLEASFPGLLEIPNFLIEFI 545 Query: 524 PPLYRID-----LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETT 578 P+ +I ++ + E E E + +KGLG + ++RE Sbjct: 546 TPIVKITIMSGPNRRKTIPFYSMPEYEQWRETEGSTCS-YKQKYYKGLGTSSAQEMREYF 604 Query: 579 --LDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 LD + +R L +D+ +D+ +KK+++DR+ WL+ ++ Sbjct: 605 TQLDKHLKRFDALRDEDKS------SIDLAFSKKKADDRKEWLRNYQPGTYLD 651 >UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=TOP2M_DICDI Length = 1284 Score = 501 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 129/613 (21%), Positives = 265/613 (43%), Gaps = 32/613 (5%) Query: 31 RPNHLGQEVIDNSVDEALAG-HAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVE 88 + E++ N+ D + V ++ + S+ +++DG+G+PV +H E VE Sbjct: 172 GLLKIYDEILVNAADNKKRDSKMSFIKVEINPNENSISIMNDGKGIPVVMHQTENCYVVE 231 Query: 89 LILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEK 146 +++ L +G F++ + GG +G G + N SK V + G+ Y + N Sbjct: 232 MVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKEFTVETVDKSSGKKYFQRWSNNMG 291 Query: 147 VQDLQVVGTCGK-RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 + ++ G+ + T + F PD F + +++ + G Sbjct: 292 DRSEPIITPIGEGESDYTKITFKPDLEKFKIKSLWDDNILQLMERRLYDIAGCNTELMVT 351 Query: 206 INNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI--GNFAGDTEAVDWALLW-LPEGGEL 262 +N + +Q + Y N + +F + W + L E G+ Sbjct: 352 LNGKRLNYNFQSYVKLYEHHLNNSTKREDNEEQYREESFEFGEISPRWKIGIGLSETGQF 411 Query: 263 LTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSV 322 S+VN I T++GGTHVN L ++ + E + ++ +++ +I A ++ Sbjct: 412 TQVSFVNSINTVKGGTHVNFLADQIVRYVGEKLKKKH---SDLEIRPMNIKHHLALFVNC 468 Query: 323 KMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA 382 + +P F Q+KE L+++ + + ++ + +N + E +A A+ + + Sbjct: 469 LVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLAQFVKNSKIIERVAGWALMKQKADLIH 528 Query: 383 AKKVVRKKLTSGPALPGKLADCTAQD---LNRTELFLVEGDSAGGSAKQAR---DREYQA 436 + + K T ++ KL D L + EGDSA A R Sbjct: 529 STSGRQSKTTLIKSI-SKLDDANWAGGLKSKECTLIITEGDSAKSLALAGLSVVGRNSYG 587 Query: 437 IMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-----DDLSQLRYGKICILADA 491 + PL+GK+LN +V+S ++L+++E+++++ +G+ + + + LRYG++ I+AD Sbjct: 588 VFPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHKNSYDTDESMEDLRYGRVMIMADQ 647 Query: 492 DSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG---KEVYYALTEEEKEGVL 548 D DG HI L+ + L+K G + + P+ + K+ ++ + + EK Sbjct: 648 DHDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIKATKSSTQKKSFFTIKDYEKWRET 707 Query: 549 EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA 608 + K + ++ +KGLG + +E + + + + D+ DD ++ M A Sbjct: 708 ISSDQLK-QYTIKYYKGLGTSTSAEAKEYFSNLDKHVIKFIWGDEADD-----LIKMAFA 761 Query: 609 KKRSEDRRNWLQE 621 K S R+ W++E Sbjct: 762 KDLSSLRQRWIKE 774 >UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2UZM0_NAEGR Length = 1457 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 131/665 (19%), Positives = 264/665 (39%), Gaps = 69/665 (10%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTR---------------------------PNHLGQEV 39 + + + E + RP Y + + E+ Sbjct: 51 EEIYQKKSLREQILLRPDTYVGSVNMQEGEDMWIWDDEDKRMKMKTIKFVPALYKIFDEI 110 Query: 40 IDNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 + N+ D ++ ++ V ++ + + V ++G G+PV IH E + +I L Sbjct: 111 LVNAADHSVRDETCNKIKVTINPEQNEISVYNNGAGIPVKIHAEHKIYVPTMIFGHLLTS 170 Query: 98 GKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGT 155 F + + +GG +G G + N S++ V + + + + + ++ + T Sbjct: 171 SNFDDTQKRVTGGRNGYGAKLTNIFSEKFIVETVDSEEKKKFRQTWTQNMEKEEEPKITT 230 Query: 156 CGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG-VEITFKDEINNTEQRWC 214 C K + T + F+PD + F + + +LK + G ++ +N + Sbjct: 231 CSKAESYTEITFYPDLSKFGMDKLD-DDIVSLLKKRVYDLAGTLKTGIGIYLNGKKITGM 289 Query: 215 YQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTM 274 DY+ + + W + G + S+VN I T Sbjct: 290 --KTFKDYVKLYTIDKEIHYFE----------DGKRWKVGITLSEGSMQQVSFVNSICTT 337 Query: 275 QGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK 334 +GG HV+ + + D + + ++ + + I ++ +S + +P F Q+K Sbjct: 338 KGGKHVDHIVNQVSDNI-----KKALVKKNNTIKPAYIKNQLWVFVSSLIINPSFDSQSK 392 Query: 335 ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSG 394 E L++ + +AF+ + + A+E + + A +++ + + +LT Sbjct: 393 ETLTTSMKDFGSKCKLDEAFLKKVTK--MASEAVLKYADFKSEKALNKKSGTKKSRLTGI 450 Query: 395 PALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVS 451 L D +++ + L L EGDSA A R+Y + PLKGK LN + Sbjct: 451 SKL-DDANDAGSKNSEKCTLILTEGDSAKALAVGGLSVVGRDYYGVFPLKGKPLNVRDCK 509 Query: 452 SDEVLASQEVHDISVAIGIDPD----SDDLSQLRYGKICILADADSDGLHIATLLCALFV 507 D+V+ ++E+ ++ +G+ D +D+ LRYG I I+AD D DG HI LL Sbjct: 510 LDKVVKNEEISTLAKILGLKFDKTYTKEDIKSLRYGSIMIMADQDHDGSHIKGLLINFIH 569 Query: 508 KHFRALVK-HGHVYVALPPLYRIDLG--KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFK 564 K + +L+K G + + P+ + K+ + E E E L KG ++ +K Sbjct: 570 KFWPSLLKIPGFLKEFITPIVKATNNRTKKAVTFFSIPEYETWKEGLSDTKG-WTIKYYK 628 Query: 565 GLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD 624 GLG + +E + + + + D D + + +K +++R+ WL + Sbjct: 629 GLGTSTAPEAKEYFSNMSLHQKRF-----KYDTDCDKKITSVFSKAATDERKEWLNNHQE 683 Query: 625 MAEIE 629 I+ Sbjct: 684 GTYID 688 >UniRef50_A6TSS9 DNA gyrase, subunit B domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSS9_ALKMQ Length = 680 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 196/682 (28%), Positives = 326/682 (47%), Gaps = 61/682 (8%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Q Y ++I LT +E VR RP + + T H E + NSVDEA G K + V Sbjct: 6 KQEYGNESISSLTEIEKVRLRPQVIFGSDGITGSRHTVDETVANSVDEAKEGFGKLIKVK 65 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS---NKNYQFSGGLHGVG 115 D+S+ V D RG+PV+ + +E EL+ C L+AGGK++ ++Y++S GL+G+G Sbjct: 66 RFKDRSISVQDFARGIPVEFNSKENKYNWELVFCTLYAGGKYNTNSGESYEYSKGLNGLG 125 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 + S+ ++V VRRDG Y + FE GE + LQ C +TGT++ + PD F Sbjct: 126 TTATQFASEYMDVLVRRDGYEYTLRFEKGENIGGLQK-KKCDYESTGTTITWKPDLDVFT 184 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 + +LK +A++ G+ DE + + Y+ G+ DY+ E +NG L Sbjct: 185 DINIPLEFYQELLKRQAIVNKGITFELYDEASEENFTYYYEKGIVDYIEE-INGGKELSS 243 Query: 236 KPFIGNFAGDTEAVDW-------ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288 +I + D + + E Y N GG ++ L Sbjct: 244 VQYIELETKGRDRADKPEYKVKAEVAFAFNNHASHIEYYHNSSYLEYGGAPDKAVKSAFL 303 Query: 289 DAMREFCEYRNILPRGVKLS-AEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 A+ ++ + N+ + K + DI D + + F QTK +S+ + ++ Sbjct: 304 SAIEQYLKNNNLYKKDEKRAIFADIEDSLVLISNSYSTLTSFENQTKRAISNVFIQSALT 363 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVR-KKLTSGPA----LPGKLA 402 +K+ ++ +N A+ +A I + + R A K + KK P+ K Sbjct: 364 DFLKEKLQIYFIENKVEADKIANQIIINKRSRESAEKTRINVKKKLESPSNFANKVAKFV 423 Query: 403 DCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVH 462 DC +D ++ EL++VEGDSA GS KQ RD E+QAIMP++GKILN + D + + Sbjct: 424 DCKTKDKSKRELYIVEGDSAMGSTKQGRDSEFQAIMPVRGKILNCLKAKLDNIFNDSVIV 483 Query: 463 DISVAIGIDPD----------SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRA 512 D+ + + + +L +L + K+ I DAD DG I TL+ A+ + Sbjct: 484 DLLKVLSCGIEIKSKNNTDLYTFELDKLNWDKVIICTDADVDGYQIRTLILAMLYRLVPT 543 Query: 513 LVKHGHVYVALPPLYRI--------------------DLGKE--VYYALTEEEKEGVLEQ 550 L++ G VY+A PL+ I + G + + ++++++ V+ + Sbjct: 544 LLREGKVYIAETPLFEIISTTLPKLTDKQKDGITFVENKGDKNYSIFVYSDQQRDFVVSK 603 Query: 551 LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKK 610 L KGK +QR KGLGE P + +TT++P TR+L+Q+T+ D Q+ D + D+LL Sbjct: 604 L---KGKYAIQRSKGLGENEPEMMWQTTMNPQTRKLIQVTMS--DAQKADDVFDLLLGNN 658 Query: 611 RSEDRRNWLQEKGD--MAEIEV 630 E R+ + E G + +I+V Sbjct: 659 L-EGRKVHIAENGHKYLEQIDV 679 >UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIW3_ENTBH Length = 1159 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 140/650 (21%), Positives = 256/650 (39%), Gaps = 63/650 (9%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + + T E + RP Y + + E++ Sbjct: 6 EEIYQKKTPKEHILLRPDTYIGSVEIDTQSAFVWDNMQEKIVLKNVKFAPGLYKIFDEIL 65 Query: 41 DNSVDEALAGH-AKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK 99 N+ D + V ++ S+ + +DG G+P++IH +E V ELI L Sbjct: 66 VNAADNKQRDPRMTYIKVYINEM-SVSIENDGNGIPIEIHQKEQVYVPELIFGHLLTSSN 124 Query: 100 FSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKR 159 +++ + +GG +G G + N S EV G+ Y+ F+N ++ + + Sbjct: 125 YNDNEKKVTGGRNGYGAKLCNIFSVHFEVETVSKGRKYSQVFKNNMEIIGKPTISAYSGK 184 Query: 160 NTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVE---ITFKDEINNTEQRWCYQ 216 + T + F PD F F ++ K +C V+ I D+ Sbjct: 185 D-YTKITFVPDFKRFGMSLFDSDIISIFYKRVYDMCATVKNTEIYLNDKKLMI------- 236 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 + L +Y ++ L K W + + + S+VN I T +G Sbjct: 237 NNLKEYAQLYLSHDVKLVTKKI---------NDRWEIACASTDEQFMQVSFVNSICTSKG 287 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 GTHVN + L+D + + R+ + + L ++ + ++ +++P F QTKE Sbjct: 288 GTHVNHVLDQLMDPLISAVKKRD---KTLVLKPLNVKNNLFLFINALIENPIFDSQTKEN 344 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA 396 L+ + A D I + +N + + + ++ V K+ P Sbjct: 345 LTLKSSAFGSKCQPIDDIIKDIIKNTDIIDKIITFSKIKQAVLLKKTDGVKTTKIVGIPK 404 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSD 453 L + + L L EGDSA A R+ + PL+GK+LN E S+ Sbjct: 405 LED-ANFAGTKRSSECTLILTEGDSAKTLAVAGLSVVGRDKYGVFPLRGKLLNVREASNK 463 Query: 454 EVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 +++ + E+ I +G+ D + LRYG I I+ D D DG HI L+ F Sbjct: 464 QIMDNAEISAIKKILGLQHGKTYTDTTSLRYGHIMIMTDQDFDGSHIKGLIINFLDYFFP 523 Query: 512 ALVKH-GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKK-GKPNVQRFKGLGEM 569 +L+K G + + P+ R KE Y T E E +Q+++ K ++ +KGLG Sbjct: 524 SLLKILGFLQEFITPIVRATKKKEKYDFFTIPEYEKFKQQIEQIKDSGWVIKYYKGLGTS 583 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 ++ + + ++ ED ++D+ KK+++DR+ W+ Sbjct: 584 TTDDAKQYFNNLKLHVKTFIPVELED----RELIDLAFNKKKADDRKEWI 629 >UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A7ANB1_BABBO Length = 1437 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 143/672 (21%), Positives = 258/672 (38%), Gaps = 75/672 (11%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + + LE + RP Y T + E++ Sbjct: 9 EQRYQKKSQLEHILLRPDTYIGNTEMLTQQMWVYNQEAKRMLYEPVTFIPGLYKIFDEIL 68 Query: 41 DNSVDEALA-------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILC 92 N+ D + V +A ++ V +DG +PV+IH E V E+I Sbjct: 69 VNAADVHARQQSDPSLTRMTCIKVNFNATTGAITVFNDGEPIPVEIHKEHNVYVPEMIFG 128 Query: 93 RLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV---RRDGQVYNIAFENGEKVQD 149 L + +++ + +GG +G G + N SK V +R Q N +V Sbjct: 129 ELLTSDNYDDEDGRITGGRNGFGAKLTNIFSKSFSVTCADSKRHKQFAMKWESNMTRVAS 188 Query: 150 LQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVL--CPGVEITFKDEIN 207 VG+ ++ V F PD F P L +LK + G+ + + DE Sbjct: 189 PAKVGSYHGKD-FVKVTFIPDYERFGIPTMDEGTLKVLLKRVYDVAGTTGLRVYWNDERL 247 Query: 208 NTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGE-LLTES 266 Y+ PT+ + +A W ++ G S Sbjct: 248 GISD-------FKQYVGLYFEDDPTVVKVY--------DKAHRWEVMVSATDGSGFQQVS 292 Query: 267 YVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQD 326 +VN I T++GG+HV + + L+ A+ + +N GV+L I + ++ ++ + Sbjct: 293 FVNNITTLKGGSHVQHVLEPLVTALTNKVKSKN--KDGVELKPYQIKNYIFLFVNCQIVN 350 Query: 327 PQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKV 386 P F QTKE L+++ ++ + + ++ E + A ++ KV Sbjct: 351 PTFDSQTKETLTTKPAKFGSKYIMNPKAVAQILKS-TLTERILSFAQGRLNIELKKKMKV 409 Query: 387 VRK--KLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLK 441 + +LT P L + + L L EGDSA S R+ + PLK Sbjct: 410 TKAVNRLTGIPKLED-ANNAGTRHARNCTLILTEGDSAKTSCLAGLSVVGRDNYGVFPLK 468 Query: 442 GKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDD---LSQLRYGKICILADADSDGLHI 498 GK+LN + S +++ + E+ +I +G+D + LRYG I I+ D D DG HI Sbjct: 469 GKLLNVRDASYKQLVQNAEIQNILKIMGLDVSKKEQTTPDGLRYGSIMIMTDQDYDGSHI 528 Query: 499 ATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGK 557 LL L + +++ G + + P+ + G V T ++ ++ Sbjct: 529 KGLLINLLHYFWPKMIQCRGFIREFVTPIIKATKGDSVLSFFTVQDYVRWVQS--TNVAG 586 Query: 558 PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRN 617 ++ +KGLG + +E ++ + + D+ DD +D+ KKR +DR+ Sbjct: 587 WKIKYYKGLGTSTDKEFKEYFVNIQQHLIDFIYEDNADDDS----IDLAFNKKRVDDRKL 642 Query: 618 WLQEKGDMAEIE 629 W+Q ++ Sbjct: 643 WMQSYEHGTTVD 654 >UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP2_PLAFK Length = 1398 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 146/715 (20%), Positives = 270/715 (37%), Gaps = 103/715 (14%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPN--------------------------HLGQEVI 40 + + + +E + RP Y + + + E+I Sbjct: 8 EERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYVPGLYKIFDEII 67 Query: 41 DNSVD------EALAGHAKRVDVILHADQ-SLEVIDDGRGMPVDIHPEEGVPAVELILCR 93 N+ D E + + ++ + + V +DG G+PVDIH E + +I Sbjct: 68 VNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEMNIYVPHMIFGE 127 Query: 94 LHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQ 151 L + + + +GG +G G + N SK V + + + + + Sbjct: 128 LLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSRKKEFKMTWSDNMSKFSEP 187 Query: 152 VVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG---VEITFKDEINN 208 + ++ V F PD F + +L + G V + + Sbjct: 188 HIKNYNGKD-YVKVTFKPDLNKFGMTEMD-DDIESLLFKRVYDLAGTCSVRVYLNGQRLA 245 Query: 209 TEQRWCYQDGL-------------------------------------NDYLAEAVNGLP 231 + Y D E +G P Sbjct: 246 VKDFKSYVDLYLKDNSNDNKNNKGQNDNNNNNNNNNDENANQNNDNLDVSLSNEPADGTP 305 Query: 232 TLPEKPFIGNFAGDTEAV------DWALLWL-PEGGELLTESYVNLIPTMQGGTHVNGLR 284 T N D W ++ +G + S+VN I T +GG+HVN + Sbjct: 306 TKNNNNNNNNNDEDEIVKIHEKQHRWEIVVSKSDGSQFQQVSFVNSICTTKGGSHVNYIV 365 Query: 285 QGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAA 344 + LL ++ + +N G+++ + I + ++ + +P F QTKE L+++ Sbjct: 366 EQLLSSLSKKANAKN--KGGMEIKSGHIRNHLWVFVNCLIVNPTFDSQTKETLTTKPVKF 423 Query: 345 FVSGVVKDAFILWLNQNVQAAELLAE---MAISSAQRRMRAAKKVVRKKLTSGPALPGKL 401 ++ D I + ++ + +L A +++M+A R+++ P L Sbjct: 424 GSKCILSDKTINNVLKSPILSNILLWAQAKAQVELKKKMKAGSSKARERIIGIPKLED-A 482 Query: 402 ADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLAS 458 D ++ L L EGDSA S R+ + PLKGK+LN + S +++ + Sbjct: 483 NDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYGVFPLKGKLLNVRDASFKQLMDN 542 Query: 459 QEVHDISVAIGIDP---DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK 515 +E+ +I +G+D + DD+ LRYG + I+ D D DG HI LL + K + +L+K Sbjct: 543 KEIQNIFRIMGLDITDKNKDDIKGLRYGSLMIMTDQDYDGSHIKGLLINMIHKFWPSLLK 602 Query: 516 H-GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQL 574 H G + + P+ ++ G + Y T E E E ++ +KGLG + Sbjct: 603 HKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWKENTNLLG--WKIKYYKGLGTSTDREF 660 Query: 575 RETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++ D +++ L D D +DM +KKR EDR+ WLQ + ++ Sbjct: 661 KQYFSDIKNHKIMFLWTGDRDGDS----IDMAFSKKRIEDRKLWLQNFILGSYVD 711 >UniRef50_Q1NK64 DNA topoisomerase II:ATP-binding region, ATPase-like n=3 Tax=Bacteria RepID=Q1NK64_9DELT Length = 614 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 190/642 (29%), Positives = 295/642 (45%), Gaps = 61/642 (9%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTD--------TTRPNHLGQEVIDNSVDEALAGHAK 53 + Y+ I+ L+ LE +R RPGMY L +EVIDN VDE + G + Sbjct: 5 SAVYDESKIKTLSSLEHIRMRPGMYIGRLGNGSHPDDGIYILLKEVIDNGVDEFIMGAGR 64 Query: 54 RVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 +D+ L D + + D GRG+P+ VE + ++ G K++ +QFS GL+G Sbjct: 65 AIDIALADDNVVTIRDYGRGIPLGK-------LVECV-SVINTGAKYNTDAFQFSVGLNG 116 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF 173 VG VNA+S R V RDG+ F G V + + GT V F PD Sbjct: 117 VGTKAVNAMSSRFVVTSFRDGEFARAKFARGVLVNEE---SGRSREPNGTLVEFRPDGEM 173 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 F F+ + LK + L G+ + F E + ++GL D LA +G Sbjct: 174 FPEYAFNRDFIRRRLKRYSYLNAGLTLNFDGE------SFYSENGLLDLLASETSGTSLY 227 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 +P V++A GE S+VN T +GGTH++ R+GLL + E Sbjct: 228 --EPIYHREK----TVEFAFSHTDGYGESYF-SFVNGTYTAEGGTHLSAFREGLLKGVNE 280 Query: 294 FCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 + G K D+ + ++VK+++P F QTK +L + + V++A Sbjct: 281 YA--------GKKFDGADVREGVVGAVAVKVREPIFESQTKNKLGNADIRGEIVTAVREA 332 Query: 354 FILWLNQNVQAAELLAEMAISSAQRRM------RAAKKVVRKKLTSGPALPG-KLADCTA 406 +L +N AEL+ + SA+ R + AK RK P L K Sbjct: 333 VSAFLYKNTDIAELVIDKIQQSARVRKELQHVRKEAKAKARKVALKIPQLKDCKYHPAPG 392 Query: 407 QDL---NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 + +FL EG SA GS ARD QA+ LKGK LN + + + E+++ Sbjct: 393 KPSPAGRENMVFLTEGQSASGSIVSARDPMTQAVFSLKGKPLNVFGQPMALLYKNDEMYN 452 Query: 464 ISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 I A+ + + + +LR+ KI I DAD DGLHI LL F+ +F +LVK GHVY+ Sbjct: 453 IMRALDV---EESIGRLRFDKIIIATDADVDGLHIRNLLLTFFLHYFESLVKRGHVYILE 509 Query: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQL---KRKKGKPNVQRFKGLGEMNPMQLRETTLD 580 P+YR+ ++ +Y TE+E+ ++L + + V RFKGLGE++P + ++ Sbjct: 510 TPIYRVRNKEQTFYCYTEKERREADQKLAGRGKTRRPVEVTRFKGLGEISPKEFKQFIGS 569 Query: 581 PNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 RL Q+ ID +++ + K + RR ++ Sbjct: 570 --EMRLQQVDIDT--LSEVPRVLEFYMGKN-TPSRREYIMSH 606 >UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS115 RepID=C4R475_PICPG Length = 1344 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 141/654 (21%), Positives = 254/654 (38%), Gaps = 52/654 (7%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEV-------IDNSVDEALAGHAKRVDVIL 59 +D + L+ LE + +RP Y + + Q + ++ V + G K D IL Sbjct: 64 SDQYQKLSQLEHILKRPDTYIGSVEKHESEQWIYNKETESMERKVVSIVPGLFKIFDEIL 123 Query: 60 HADQSLEVIDDG-RGMPVDIHPEEGVPAV-----ELILCRLHAGGKFSNKNYQFSGGLHG 113 ++ D + + V I PEE + V ELI L +++ + +GG +G Sbjct: 124 VNAADNKIRDPSMKNIEVTIKPEENLIEVKNDGKELIFGNLLTSSNYNDDQKKVTGGRNG 183 Query: 114 VGISVVNALSKRVEVNVRRD--GQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDE 171 G + N S V G++Y + D V+ + K T V F PD Sbjct: 184 YGAKLCNIFSTEFIVETYDKSSGKLYTQRWSQNMGKTDKPVIKSIKKATEYTKVSFRPDL 243 Query: 172 TFFDSPRFSVSRLTHVLKAKAVLC---PGVEITFKDEINNTEQRWCYQDGLNDYLAEAVN 228 F+ L + + LC + + E Y + L + Sbjct: 244 AKFNMTELDEDILGVLRRRVFDLCGSVRDISVKLNGEKLKIRNFKQYVEMYVKALEHKND 303 Query: 229 GLPT--------LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHV 280 + T T W + + S+VN I T GGTHV Sbjct: 304 PIKTEDSSLLPPPSSSSPSQTIVYQTLNDRWEIAFAVSDSTFNQVSFVNSIATTSGGTHV 363 Query: 281 NGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR 340 N + ++ + + + +N + + I + ++ +++P F QTKE+L++R Sbjct: 364 NFIADQIVKKIEKEIKTKN---KKAMIKPFQIKNNMFLFINCLVENPAFTSQTKEQLTTR 420 Query: 341 QCAAFVSGV-VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPG 399 V D FI + + + + ++A +A + ++ + ++T P L Sbjct: 421 ASQFGGKKTEVPDDFIKKILR-TGIVDAILDIAAMNADKALKKNDGSRKNRITGYPKLED 479 Query: 400 KLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVL 456 ++ + L L EGDSA A R+Y + PL+GK+LN E S+D+++ Sbjct: 480 -ANKAGTKEGYKCTLILTEGDSASSLAVAGLAVVGRDYYGVYPLRGKMLNVREASADQIM 538 Query: 457 ASQEVHDISVAIGIDPDS----DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRA 512 + E+ I +G ++++ LRYG I I+ D D DG HI L+ F Sbjct: 539 KNAEIQAIKQIMGFQHKKNYTPENINSLRYGHIMIMTDQDHDGSHIKGLIINFLESSFPG 598 Query: 513 LVK-HGHVYVALPPLYRID-----LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL 566 L+K + + P+ ++ ++V + E E EQ + +KGL Sbjct: 599 LLKVPNFLLEFITPIVKVTITSGPEKRKVIPFYSMPEYEAWREQNTE---SFKQKYYKGL 655 Query: 567 GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 G ++RE + + D D +D+ +KK+++DR+ WL+ Sbjct: 656 GTSLAEEMREYFSQLDKHMKTFHALQDVD----PGFIDLAFSKKKADDRKEWLR 705 >UniRef50_Q18GY2 DNA gyrase subunit B n=10 Tax=cellular organisms RepID=Q18GY2_HALWD Length = 852 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 166/430 (38%), Positives = 240/430 (55%), Gaps = 9/430 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y A I+VL GLE VR+RP MY +T +HL EV+DN++DEALAGH ++DV L Sbjct: 5 TEYGAGDIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNAIDEALAGHCDQIDVTL 64 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S+ V D+GRG+PVD H + +PAVE+I+ LHAGGKF NK+YQ SGGLHGVG+SVV Sbjct: 65 HEDGSVSVADNGRGIPVDTHEQHDIPAVEVIMTVLHAGGKFDNKSYQVSGGLHGVGVSVV 124 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQD--LQVVGTCGKRNTGTSVHFWPDETFFDSP 177 NALS+ +EV ++RDG ++ FE GE +V TGT++ FWP + F++ Sbjct: 125 NALSRWLEVEIKRDGALWRDRFEYGEPQPGAFERVRDLDPDEETGTTIRFWPSDDIFETT 184 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 F S L + L+ A L GVEI E ++ ++C+ G+ +++ L + Sbjct: 185 EFEFSTLENRLRELAFLNSGVEICINGETDDINSKFCFNGGIREFVKYLDETKTVLHDSV 244 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 D V+ AL E + ++ N I T +GGTH+ G + L + ++ Sbjct: 245 VHYQNEQDGIEVEVALQ-ATEELQGSIHAFANNINTREGGTHLTGFKTALTRVINDYGRE 303 Query: 298 RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 N+L L ED+ + V+S+K DPQF GQTK +L + V + + Sbjct: 304 HNLLDGFDSLQGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDVRGIVESTTHERLGTY 363 Query: 358 LNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTEL 414 L +N A+++ A+ +A+ R A + RK +LPGKLADC ++D +EL Sbjct: 364 LEENPDVAKVIVRKAVEAAKARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPAESEL 423 Query: 415 FLVEGDSAGG 424 F+VEGDSAGG Sbjct: 424 FIVEGDSAGG 433 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 91/208 (43%), Positives = 126/208 (60%), Gaps = 6/208 (2%) Query: 425 SAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP-DSDDLSQLRYG 483 SAKQ R+R +QAI+PLKGKILN + D +L + EV + AIG D ++ RY Sbjct: 649 SAKQGRERRFQAILPLKGKILNVEKHRLDRILENDEVRALITAIGAGIGDEFNVEDARYN 708 Query: 484 KICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEE 543 ++ IL+DAD DG HI TLL L +H R LV+ G+VY A PPLYRI Y A+T+ E Sbjct: 709 RLIILSDADVDGAHIRTLLLTLLYRHMRPLVEAGYVYAAKPPLYRIRYNGNTYDAMTKSE 768 Query: 544 KEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMM 603 ++ V+ + VQRFKGLGEMNP QL ETT++P R L Q+TI ED D M Sbjct: 769 RDQVISDVCN-GNPTQVQRFKGLGEMNPEQLWETTMNPENRVLKQITI--EDAAAADKMF 825 Query: 604 DMLLAKKRSEDRRNWLQEKGDMAE-IEV 630 +L+ E R+ +++++ AE +++ Sbjct: 826 SVLMG-DAVEPRKEFIKDRATDAEWVDI 852 >UniRef50_D2QHC5 DNA topoisomerase type IIA subunit B region 2 domain protein n=6 Tax=Bacteroidetes RepID=D2QHC5_9SPHI Length = 632 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 188/648 (29%), Positives = 301/648 (46%), Gaps = 67/648 (10%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTD--------TTRPNHLGQEVIDNSVDEALAGHAKRV 55 YN D+I L E +R RPGMY L +E IDN +DE + G K + Sbjct: 10 QYNEDSIRSLDWREHIRLRPGMYIGKLGDGSAADDGIYVLIKETIDNCIDEHVMGFGKVI 69 Query: 56 DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115 +V + D +EV D GRG+P+ V ++ +++ GGK+ + +Q S GL+GVG Sbjct: 70 EVRV-TDHRVEVRDFGRGIPLGK--------VVEVVSKINTGGKYDSGAFQKSVGLNGVG 120 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 VNALS V R+G+ F+ GE Q GT + F PD+T F Sbjct: 121 TKAVNALSSYFRVQSFREGKTVWAEFDRGELK---QRGEDATTERNGTLICFEPDDTVFK 177 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 F L +++ L G+ I+F +Q++ Q+GL D L + Sbjct: 178 HFHFIPQFLENMIWNYCYLNAGLTISFN------KQKYLSQNGLLDLLRDKTKKDEDSLR 231 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 P I D ++ AL + GE S+VN T QGGTH+N L++ +++ +R Sbjct: 232 YPIIHLKGND---LEIALTHGNQYGEEYY-SFVNGQYTTQGGTHLNALKEAVVETVRRHF 287 Query: 296 EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR---------QCAAFV 346 + DI +S+++Q+P F QTK +L S+ ++FV Sbjct: 288 DK--------NYEVSDIRSSIIAAVSIRVQEPVFESQTKTKLGSQNMSPEPNAQSVSSFV 339 Query: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA--KKVVRKKLTSGPALPGKLADC 404 VK+ +L+ N E L + S + R A KK+ + KL DC Sbjct: 340 KDFVKERLDDFLHMNPAVREALKKRIEQSERERKELAGIKKLANDRAKKASLHNKKLRDC 399 Query: 405 TAQ-------DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLA 457 D ++ LF+ EGDSA GS ++R+ + QA+ L+GK LN + ++ V Sbjct: 400 RNHLPDLKADDRYQSTLFITEGDSASGSITKSRNVQSQAVFSLRGKPLNCFGLTKKVVYE 459 Query: 458 SQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 ++E + + A+ I D L LRY +I I DAD DG+HI L+ F++ F LV++G Sbjct: 460 NEEFNLLQHALDI---EDGLEGLRYNRIVIATDADVDGMHIRLLMLTFFLQFFPDLVRNG 516 Query: 518 HVYVALPPLYRI---DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQL 574 H+Y+ PL+R+ KE Y +E+EK+ +++L + K + RFKGLGE++P + Sbjct: 517 HLYILETPLFRVRNPKNHKETTYCYSEDEKQKAIDKLTKAAKKVEITRFKGLGEISPDE- 575 Query: 575 RETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 RL + ++ E ++ + K + DR+ ++ + Sbjct: 576 -FGLFIGENMRLEPVIMEKE--TSVPKLLSYYMGKN-TPDRQRFIIDN 619 >UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV61_PHYIN Length = 1329 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 146/660 (22%), Positives = 259/660 (39%), Gaps = 66/660 (10%) Query: 17 EPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGH-AKRVDVILHA-------DQSLEVI 68 + V P +Y + E+I N+VD + + +DVI+ + V Sbjct: 20 QAVEYVPALY-------KIFDEIIVNAVDNKVRDPSMRHLDVIIEPGSKANGYRPWISVY 72 Query: 69 DDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEV 128 +DG+G+PV H E V EL+L L G F + + +GG HG G + N SK V Sbjct: 73 NDGKGIPVKFHKTEKVYVPELVLGHLLTGSNFDDTAARLTGGRHGYGAKLTNIFSKEFVV 132 Query: 129 NVRRD--GQVYNIAFENGEKVQDLQVVGTCGKRN--TGTSVHFWPDETFFDSPRFSVSRL 184 G Y + N + + + ++ T V F PD F+ + + S + Sbjct: 133 ETGDTSMGLRYKQVWHNNMRTRGEPEITEFSGKDAKDFTKVSFSPDLEKFEMEKLTAS-M 191 Query: 185 THVLKAKAVLCPGVEITFKDEINNTEQRWC-YQDGLNDYLAEAVNGLPTLPEKPFIG--- 240 T VLK + G + +N + ++ + + N + KP Sbjct: 192 TRVLKKRVYDVAGCLSDVQVTLNGKKLPISGFESYIKTFRYSTTNNPVSKTAKPSKDSDD 251 Query: 241 ------NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 ++ W + LP + S+VN + ++GG+HV + + + E Sbjct: 252 AASSGSDYIYSRVNKRWKIGVLPSDVGFVQVSFVNGMSALRGGSHVGYVSDQICRRVAEH 311 Query: 295 CEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 + + +S + A ++ ++++P F Q KE ++SR + V+ + Sbjct: 312 VNKK---FPELSVSTAQVKPHMAIFINCQIENPTFDSQMKEFMTSRPPTFGSTCVLSERL 368 Query: 355 ILWLNQNVQAAELLAEMAISSAQRRMRAA--KKVVRKKLTSGPALPGKLADCTAQD---L 409 + + + + E + SA+ R RAA KKV + S KL D Sbjct: 369 LKLVLSDSG----IVERVVQSARARQRAALLKKVSSTRAKSSSVNVPKLEDANLAGGARS 424 Query: 410 NRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 466 + L L EGDSA A R+ + PL+GK+LN + + ++ + E + Sbjct: 425 SECSLILTEGDSAKALAVAGLAVVGRDQYGVFPLRGKLLNVRDATVAQLGKNAEFAHLCT 484 Query: 467 AIGIDPD-----SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH-GHVY 520 +G+ D + +LRYG++ + D D DG HI LL LF + L+K G + Sbjct: 485 ILGLRMDEHYGTEEARQKLRYGRVIAMTDQDHDGSHIKGLLFNLFHTFWPELLKEGGFIS 544 Query: 521 VALPPLYRI---------DLGKEVYYALTEEEKEGVLEQLKRKK-GKPNVQRFKGLGEMN 570 + P+ ++ + G E + E + ++ +KGLG Sbjct: 545 EFITPIIKVSPTSKRVGTERGLETRRFFSLPEYFEWKASIDSADLKHYVIKYYKGLGTST 604 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW-LQEKGDMAEIE 629 + RE D + + D D +DM+ +K R+ DR+ W L E + ++ Sbjct: 605 SAEGREYFSDLDNHLVDFHWSGDNDG----DALDMVFSKARAADRKAWLLNEYSPASYLD 660 >UniRef50_Q7RHG3 DNA topoisomerase II, putative n=3 Tax=Plasmodium (Vinckeia) RepID=Q7RHG3_PLAYO Length = 930 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 183/664 (27%), Positives = 301/664 (45%), Gaps = 119/664 (17%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y+A I +L GLE VR+RPGMY T + + E++DN+VDE ++ VI+ Sbjct: 111 NNYDAKDIVILEGLEAVRKRPGMYIGNTDSKGLHQILFEIVDNAVDEYNNHECNQIKVII 170 Query: 60 HADQSLEVIDDGRGMPV---DIHPEEGVPAVELIL------------------------- 91 H D+S+ + D+GRG+P + + + V +L Sbjct: 171 HNDESITIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFLDDDINMIVNEEKGKQKKT 230 Query: 92 ---------CRLHAGGKFSNKN-------------------YQFSGGLHGVGISVVNALS 123 + K ++ + Y++S GLHGVG+SV NALS Sbjct: 231 KKEVQETGNSNISNNSKGNDTSVDGTKENKDKNKTNENLQKYKYSSGLHGVGLSVSNALS 290 Query: 124 KRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS-PRFSVS 182 ++VNV RD ++YNI E G+ V++L V C + GT +H+ PD T F + + + Sbjct: 291 TFMKVNVFRDNKIYNIELEKGKVVKELN-VQDCPIKKRGTQIHYKPDNTIFKTNIKHNSE 349 Query: 183 RLTHVLKAKAVLCPGVEITFKDEINNTE-----------------------QRWCYQDGL 219 + + L A L + F DE N+ + + ++ GL Sbjct: 350 FIKNRLHQLAYLNDKLTFYFYDERNSNKGNSDKVSENVENNSYTKLDNYEYEIIKHEGGL 409 Query: 220 NDYLAEAVNGLPTLPE---KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 ++Y+ + + + K + VD L W+ S+VN + T+ G Sbjct: 410 DEYMEKLTKNKTNIFKTNNKVISISCFQKNIHVDLKLKWVTNQYNENILSFVNNVNTIDG 469 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 GTHV+ ++ + ++ + + V + E I + +LS+KM +P+F GQTK + Sbjct: 470 GTHVDAMKYAISRSINYNVKKNETIKNFVNIPGEYIREGLTAILSIKMNNPEFEGQTKTK 529 Query: 337 LSSRQCAAFVSGVVKDAFILW--LNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTS- 393 L S + ++ + N+ L + + +AA+ ++R K Sbjct: 530 LGSYYLKPILESIIFEKLSEIFDFEPNLLNTIYLKALQAKKSDEEAKAARDLIRSKNNQY 589 Query: 394 -GPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWE-VS 451 LPGKL DC + D+++ E+F+VEGDSA GSAKQAR+RE QAI+PLKGKILN + + Sbjct: 590 YSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIKN 649 Query: 452 SDEVLASQEVHDISVAIGIDPDSDDLS-----------------------QLRYGKICIL 488 + ++ + E+ + AIG++ + D+ LRYGKI I+ Sbjct: 650 NKKIFENIELKSLITAIGLNVNYDNSKTGKSNTNKRNDNKDIKKNNFIDTSLRYGKIIIM 709 Query: 489 ADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVL 548 DAD DG HI LL + + ++++G+VYVA PPLY++ K K+ V+ Sbjct: 710 TDADVDGEHICILLLTFLYRFQKEIIENGNVYVACPPLYKVTYNK----FFDNNIKDSVI 765 Query: 549 EQLK 552 + Sbjct: 766 SKFN 769 Score = 61.9 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 3/67 (4%) Query: 557 KPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRR 616 K +QRFKGLGEM QL TT+DP R+L+++T+ D + + +++ L+ + S+ R+ Sbjct: 864 KYEIQRFKGLGEMMADQLWSTTMDPQVRKLIRVTVS--DAIKANNLINSLMGED-SKSRK 920 Query: 617 NWLQEKG 623 +++ + Sbjct: 921 DFIIKNS 927 >UniRef50_B3LD45 DNA gyrase subunit b, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LD45_PLAKH Length = 992 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 184/709 (25%), Positives = 291/709 (41%), Gaps = 164/709 (23%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y+A I +L GLE VR+RPGMY T + + E+IDNSVDE + +++ Sbjct: 109 KDYDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNEIKIVI 168 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK------NYQFSGG--- 110 H D+S+ + D+GRG+P DIH + A+E +L LH+G KF ++ + S G Sbjct: 169 HEDESVTIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFVDEDTAADLVERTSVGGMS 228 Query: 111 -------LHGVG-----ISVV--------------------------------------- 119 G G VV Sbjct: 229 SEIGEDERGGKGEQKSKAKVVEKLDEKNSKKKNPKEASQKSASQMYRFSSGLHGVGLSVA 288 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP-R 178 NALS ++V V R G++++I E G+ V L V C GT +H+ PD F + R Sbjct: 289 NALSSFMKVKVFRGGKIHSIELEKGKVVTPLS-VRECPVSKRGTQIHYKPDHDIFKNTIR 347 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTE---------------------------- 210 + + + + A L + F DE + + Sbjct: 348 HNAELIKNRIHQLAYLNDRLTFYFYDERSAKKVPTSVHLAKGNEADEVDKREDKTTDAVN 407 Query: 211 -------------QRWCYQDGLNDYLAEAVNGLPTLPE---KPFIGNFAGDTEAVDWALL 254 + ++ GLN+Y+ +L + K + +D + Sbjct: 408 TTVEHNNLDFYPYEVIKHEGGLNEYMESLTKNKASLFKDSNKIISISCHQKNVHIDLRIK 467 Query: 255 WLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWD 314 W S+VN + T GGTHV+ ++ + + + V + E I + Sbjct: 468 WTQGQYHEHIVSFVNNVNTTDGGTHVDAMKYAISRCVNFNIKKNEATKNFVNIPGEYIRE 527 Query: 315 RCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW--LNQNVQAAELLAEMA 372 +LS+KM +P+F GQTK +L S + + + N+ L + Sbjct: 528 GMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFEKLSEIFDFEPNLLNTIYLKALQ 587 Query: 373 ISSAQRRMRAAKKVVRKKLTS--GPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR 430 ++ +AA+ ++R K LPGKL DC + D+NR E+F+VEGDSA GSAKQAR Sbjct: 588 AKASDEEAKAARDLIRSKNNQYYSTILPGKLVDCISDDINRNEIFIVEGDSAAGSAKQAR 647 Query: 431 DREYQAIMPLKGKILNTWEVSSDE-VLASQEVHDISVAIGIDPDSDDLS----------- 478 +RE QAI+PLKGKILN ++ +++ + + E+ + AIG+ D+ Sbjct: 648 NREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITAIGLSISCDNSKMAKGKNMLNNK 707 Query: 479 -----------------------------------QLRYGKICILADADSDGLHIATLLC 503 LRYGKI I+ DAD DG HI LL Sbjct: 708 KKDIKKKYDLKCSKKENVQVNNAMVNKKKNTLFDTPLRYGKIIIMTDADVDGEHIRILLL 767 Query: 504 ALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK 552 + + ++++G+V+VA PPLY++ + KE V++Q Sbjct: 768 TFLYRFQKNIIQNGNVFVACPPLYKVTYNR----FFDNTIKETVMKQFN 812 Score = 65.3 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 3/75 (4%) Query: 549 EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA 608 + +QRFKGLGEM QL TT+DP+ R+L+++T++ D R + ++ L+ Sbjct: 917 NAFFTFSKRYEIQRFKGLGEMMADQLWSTTMDPSVRKLIRVTVN--DAMRANNLIFSLMG 974 Query: 609 KKRSEDRRNWLQEKG 623 + S+ R++++ E Sbjct: 975 ED-SKLRKSFILENS 988 >UniRef50_B1ZME3 DNA topoisomerase type IIA subunit B region 2 domain protein n=42 Tax=Bacteria RepID=B1ZME3_OPITP Length = 629 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 180/646 (27%), Positives = 308/646 (47%), Gaps = 67/646 (10%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTD--------TTRPNHLGQEVIDNSVDEALAGHA 52 M Q Y +I+ L+ E +R RPGMY L +E IDNS+DE G+ Sbjct: 18 MAQAYTEASIKTLSSTEHIRLRPGMYIGRLGNGAHAEDGIYVLLKESIDNSIDEFTMGYG 77 Query: 53 KRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH 112 +++++ L D+ + V D GRG+P+ +E + ++ G K+ ++ ++ + GL+ Sbjct: 78 RKIEIEL-QDRMVRVRDYGRGIPLGK-------VLECV-SIINTGAKYDSETFKKAVGLN 128 Query: 113 GVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDET 172 GVG VNALS RDGQ + F G+ +D ++ T + GT + F PDE Sbjct: 129 GVGQKAVNALSFSYRAQAFRDGQTKLVEFAQGKLRKDHKIAKTTER--NGTLIEFTPDEA 186 Query: 173 FFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLP 231 F +F + +L A L G+ +TF + + ++GL D L + ++G P Sbjct: 187 LFGKDFKFRPEFIEDMLWNYAFLNRGLTLTFNG------KAFRSENGLKDLLQKNLSGEP 240 Query: 232 TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAM 291 P + E ++ A GE S+VN T GGTH+ R+ L++ + Sbjct: 241 LYPIIHL------EGEDMEVAFTHGAHYGEEYY-SFVNGQHTTMGGTHLAAFREALVETV 293 Query: 292 REFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS-------RQCAA 344 R F + A D+ +SV++ +P F QTK +L S Sbjct: 294 RNFFKR--------DYDAADVRQSIDAAVSVRVMEPVFESQTKTKLGSTDIAPGGPSIRD 345 Query: 345 FVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA--KKVVRKKLTSGPALPGKLA 402 F+ V+ + +L++N + A+ L S + R A + + R++ KL Sbjct: 346 FIGKFVQQSLDGYLHKNRETADALRNKIEESERERKELAGIRSLARERAKKASLHNRKLR 405 Query: 403 DCT------AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVL 456 DC + + LF+VEGDSA GS RD + QA+ LKGK LNT+ +S + Sbjct: 406 DCRLHLGDRNERAEESTLFIVEGDSAAGSLTATRDVQTQAVFALKGKPLNTFGLSKKVIY 465 Query: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516 ++E H + A+ + D + LRY ++ I DAD DG+HI LL + F++ F L+++ Sbjct: 466 ENEEFHLLQSALNV---EDSMDGLRYNRVVIATDADVDGMHIRLLLISFFLQFFPDLIRN 522 Query: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576 GH+++ PL+R+ KE Y +EEEK+ +++L + RFKGLGE++ + ++ Sbjct: 523 GHLFILETPLFRVRNKKETIYCYSEEEKQAAMKKLG---ASHEITRFKGLGEISAGEFKD 579 Query: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 RL +T+ +D + ++ + K + +R++++ + Sbjct: 580 FIG--EAMRLEPVTLAHLNDS--NELLGFFMGKN-TPERQDFIIDN 620 >UniRef50_B2RL68 DNA topoisomerase IV B subunit n=60 Tax=Bacteria RepID=B2RL68_PORG3 Length = 644 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 191/672 (28%), Positives = 310/672 (46%), Gaps = 92/672 (13%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTD--------TTRPNHLGQEVIDNSVDEALAGHA 52 + Y I+ L E +RRRPGMY L +EV+DNSVDE + G Sbjct: 7 LQTEYIESDIKTLEWDEHIRRRPGMYIGKLGDGSHADDGIYVLLKEVLDNSVDEFVMGAG 66 Query: 53 KRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH 112 K +D+ + + ++ V D GRG+P+ + C+++ GGK +K ++ S GL+ Sbjct: 67 KSIDITIE-NGTVTVRDYGRGIPLGK--------LVDATCKMNTGGKIDSKAFKKSVGLN 117 Query: 113 GVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDET 172 GVGI VNALS V V RDGQ + + E +++ V +GT V F PD++ Sbjct: 118 GVGIKAVNALSTEFVVTVWRDGQTKRVRYSRAELLEETDPVP--SGEPSGTEVRFTPDDS 175 Query: 173 FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPT 232 F + R+ + ++K L G+ + +++ + GL D LAE + G Sbjct: 176 LFRNYRYQEEFVVSMIKNYTFLNTGLSFFYNG------KKFLSRKGLEDLLAENMTGDAL 229 Query: 233 LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 P ++ + + G+ S+VN T QGGTH++ R+ + ++ Sbjct: 230 YPIIHL------SDTDIEIVVTHTQQYGDE-FYSFVNGQNTTQGGTHLSAFREAVARTIK 282 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQ-------CAAF 345 EF DI A +S+K+++P F QTK +L SR F Sbjct: 283 EFYSK--------NFEYSDIRSGMAAAISIKVEEPVFESQTKTKLGSRDMGPDGPTIQKF 334 Query: 346 VSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA--KKVVRKKLTSGPALPGKLAD 403 V +K +L+ + + AE + S + R + K+ R++ KL D Sbjct: 335 VGDFLKKELDDYLHIHTETAEEMLRKIQQSERERKAMSGITKLARERAKKSNLHNKKLRD 394 Query: 404 CT-------AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVL 456 CT A++ RT +F+ EG+SA GS RD YQA+ L+GK LN + ++ V Sbjct: 395 CTVHLNDPKAKEPERTSIFITEGNSASGSITTCRDANYQAVFSLRGKPLNCFGLTKKVVY 454 Query: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516 ++E + + A+ I+ L LRY ++ I DAD DG+HI L+ F++ F LV+ Sbjct: 455 ENEEFNLLQAALNIEEG---LDGLRYNRVIIATDADDDGMHIRLLIITFFLQFFPDLVRK 511 Query: 517 GHVYVALPPLYRI---------------DLGKEV-----------YYALTEEEKEGVLEQ 550 GHVYV PL+R+ G++ Y +E EK+ L+Q Sbjct: 512 GHVYVLETPLFRVFLPPESKKQTFGATPKRGRKKQESDMPKPVTDIYCYSEAEKQAALKQ 571 Query: 551 LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKK 610 L + K +V RFKGLGE++P Q ++ +D RL +++ ED + ++ + K Sbjct: 572 LGK---KADVTRFKGLGEISPEQFKD-LIDEENIRLEPVSLKRED--KIKELLTFYMGKN 625 Query: 611 RSEDRRNWLQEK 622 SE R+ ++ + Sbjct: 626 TSE-RQEFIIDN 636 >UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2V5K5_NAEGR Length = 1135 Score = 477 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 139/671 (20%), Positives = 260/671 (38%), Gaps = 67/671 (9%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTR-------------------------PNHLGQEVID 41 + T +E V RP Y +T + E++ Sbjct: 11 EQQYQKKTPIEHVLERPDTYVGSTERMKKKLFCLDSVNNIKLKEVDFIPALYRIIDEILV 70 Query: 42 NSVDEA--LAGHAKRVDVILH-ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+VD H + V + A + + ++G+ +PV++H E + EL+ L G Sbjct: 71 NAVDNHHRKGTHTNELRVTIDEAKNWIHIRNNGKSVPVEMHKIEKIYVPELVFGNLLTGS 130 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNI--AFENGEKVQDLQVVGTC 156 F + +F+GG +G G + N S + + + I +N ++ +V Sbjct: 131 NFDDNEVKFTGGRNGYGAKLANIFSTDFTIEIMDHKGTHYIQNWKKNMSQISTPTIVENK 190 Query: 157 GKRNTGTSVHFWPDETFFDSPRFS-----VSRLTHVLKAKAVLCPGVEITFKDEINNTEQ 211 K V F PD F S + + L + + P + + D+ Sbjct: 191 QKTEPYIQVSFHPDFKKFQSTGLNKELNMIDLLKRRIYDLSACNPKLNVYLNDKKVEV-- 248 Query: 212 RWCYQDGLNDYLA--EAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGE-LLTESYV 268 D +Y+ N PEK F+ D W + GE S+V Sbjct: 249 -----DNFKEYVKLFYQNNSSGEHPEKMFVHKHICDG----WEIAIGASVGEEFNQISFV 299 Query: 269 NLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQ 328 N I T+QGG+HVN + L + E+ + + +S + + ++ +++P Sbjct: 300 NSIATVQGGSHVNFVLNQLSTKISEYI-AKTYTDLQLTISPYMVRNHITLFINSLIENPT 358 Query: 329 FAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVR 388 F QTKE L+++ + V+ + I + + + + A K Sbjct: 359 FDSQTKETLTTKSISFAQKVVISNDLINSIANHTPIIDNIIAFANYKQSSASSKKFKKRE 418 Query: 389 KKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKIL 445 KL L L EGDSA A R+ + PLKGK+L Sbjct: 419 SKLL--IPKLDDANLAGTNRSMECVLILTEGDSAKALAISGLSVVGRDRFGVFPLKGKLL 476 Query: 446 NTWEVSSDEVLASQEVHDISVAIGIDPDSDD------LSQLRYGKICILADADSDGLHIA 499 N E S+D++ +QE+ ++ +G+D S +LRYGK+ ++ D D DG HI Sbjct: 477 NVREASADQIRDNQEIQNLKKILGLDDVSKTDSFEELTKRLRYGKVMLMCDQDHDGSHIK 536 Query: 500 TLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK-RKKGKP 558 LL + + L+++ V + P+ ++ G +V + E + ++ +K + Sbjct: 537 GLLLNMIHFFYPELLRNNFVDEFITPIIKVSKGSDVKSFFSIPEFQNWWTKVPENEKNRW 596 Query: 559 NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 N + +KGLG + + ++ + R ++ L DD+ + +++ +K + R++W Sbjct: 597 NQKYYKGLGTNSSKEAKDYFSNL-KRHVIALQYDDDSEPN----IELAFSKDLANARKSW 651 Query: 619 LQEKGDMAEIE 629 + D ++ Sbjct: 652 VASLKDGTFLD 662 >UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurelia RepID=A0C0L0_PARTE Length = 1274 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 137/666 (20%), Positives = 256/666 (38%), Gaps = 56/666 (8%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT------------------------RPNHLG 36 M Q + + +T +E + +RP Y + + Sbjct: 1 MRQKTIEEQYKKMTHIEHILQRPDTYIGSIQRTSEQMWIIQNGKMIQKEIEYVPGFFKIF 60 Query: 37 QEVIDNSVDEALAGHA--KRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRL 94 E++ N+ D K+ + + + + +DG +PV+IH E + ELI Sbjct: 61 DEILVNAADNLQRDTRQHKQSYIKVDIGNEITIKNDGLPIPVEIHKEYQIYVPELIFGVF 120 Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG 154 G F + + GG +G G + N S + V + + + N + + + Sbjct: 121 LTGSNFDDSEKRVVGGRNGYGAKLTNVYSTEFTLEVCDGNNYFKLVWNNNMSNKQIPTIK 180 Query: 155 TCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVE-ITFKDEINNTEQRW 213 K++ S+ + PD F +L + G+ +N+ + + Sbjct: 181 QL-KKDPYVSISYKPDYKRFGMKEIEADT-QALLTRRVYDLAGIYGSKINVYLNDEKIKI 238 Query: 214 CYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPT 273 + Y+ LP + I F D W ++ + S+VN I T Sbjct: 239 ---NSFQKYVDLY------LPTEGAIKIFDKDMTTPRWEVVVSYSPTQFQHVSFVNAIYT 289 Query: 274 MQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQT 333 +GGTHVN + ++ ++ N + +++ I ++ + +P F QT Sbjct: 290 AKGGTHVNYVTDKIIQEIQNEMN-NNKKYKSIEVQKYQIKQSLWVFINCLIDNPTFDSQT 348 Query: 334 KERLSSRQCAAFVSGV----VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRK 389 KE ++++ S V + F L + E + + A + A ++ K + Sbjct: 349 KENMTTKVSEFGGSSEEKFKVTEKFSKALIK-TDIIETIFQQAKAKADAKLNKQLKGTKT 407 Query: 390 KLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILN 446 G D ++ L L EGDSA A D R+ + PLKGK+LN Sbjct: 408 GRLHGIEKLDDANDAGKKNSELCTLILTEGDSAKALAMAGIDIVGRDRYGVFPLKGKLLN 467 Query: 447 TWEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCA 504 E S ++L ++E+ ++ IG+ + DL LRYG + I+ D D DG HI L+ Sbjct: 468 VREASLKQILQNEEIENLIKIIGLQKERQYTDLKSLRYGSVMIMTDQDIDGSHIKGLIIN 527 Query: 505 LFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRF 563 + +LVK G + + PL + G + T ++ ++ K ++ + Sbjct: 528 FIHHFWPSLVKYSGFLKEFVTPLIKATKGNQTIPFFTVQDFNKFAQEEDIKN--WKIKYY 585 Query: 564 KGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG 623 KGLG + + +E + T +Q D +DD + + KK++ DR+ WL + Sbjct: 586 KGLGTSDDQEAQEYFKNLRTHT-IQFRYDGDDDDSSID---LCFNKKKANDRKQWLAQYN 641 Query: 624 DMAEIE 629 ++ Sbjct: 642 HDLYVD 647 >UniRef50_P77966 Ssp gyrB intein n=45 Tax=cellular organisms RepID=GYRB_SYNY3 Length = 1078 Score = 470 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 173/433 (39%), Positives = 243/433 (56%), Gaps = 11/433 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVI 58 T Y AD I+VL GLEPVR+RPGMY +T P +HL EV+DN++DEALAG+ +++ Sbjct: 5 TTNYGADQIQVLEGLEPVRKRPGMYIGSTGPKGLHHLVYEVVDNAIDEALAGYCTHIEID 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 ++AD S+ V+D+GRG+P DIHP G A+E +L LHAGGKF Y+ SGGLHGVG+SV Sbjct: 65 INADGSVTVVDNGRGIPTDIHPTTGRSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS-P 177 VNALS+ VEV V R G+ + FE G + L+ G +TGT V F PD F Sbjct: 125 VNALSEWVEVKVWRQGKEHFQRFERGNPIGTLEATPNEG-HSTGTQVSFLPDTQIFKDGI 183 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLNDYLAEAVNGLPTLPE 235 F L LK A L GV ITF D + E+++ Y+ G+ +Y+ L E Sbjct: 184 EFDYHTLASRLKELAYLNAGVRITFGDRRADSLKEEQFYYEGGIREYVTYMTTDKTPLHE 243 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 + + + V+ AL W + + N I T+ GGTH+ GL+ L + Sbjct: 244 EIIYTSGEKNDVQVEVALQWCVDAYSDTLLGFANNIRTIDGGTHLEGLKAVLTRTLNSVA 303 Query: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 RN L G L E+I + V+SVK+ DP+F GQTK +L + + V +V +A Sbjct: 304 RKRNKLKDGDSNLGGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGEAL 363 Query: 355 ILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNR 411 +L N A+ + E A+ + + A + V RK + LPGKLADC+++D + Sbjct: 364 TEFLEFNPGVADAIIEKAVQAFKAAEAARRARELVRRKSVLESSTLPGKLADCSSKDPSE 423 Query: 412 TELFLVEGDSAGG 424 +E+F+VEGDSAGG Sbjct: 424 SEIFIVEGDSAGG 436 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 79/211 (37%), Positives = 126/211 (59%), Gaps = 9/211 (4%) Query: 425 SAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP--DSDDLSQLRY 482 SAKQ RDR +QAI+PL+GKILN + ++ + E+ + A+G+ D D+S LRY Sbjct: 872 SAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGDDFDISSLRY 931 Query: 483 GKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEE 542 ++ I+ DAD DG HI TLL F ++ R LV G++Y+A PPLY+++ GK +Y ++ Sbjct: 932 HRVVIMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACPPLYKLERGKNHFYCYSDR 991 Query: 543 EKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAM 602 E + + Q +QRFKGLGEM P QL +TT++P +R + ++ I ED D + Sbjct: 992 ELQEQISQFP-PNANYTIQRFKGLGEMMPQQLWDTTMNPESRTMKRVHI--EDAAEADRI 1048 Query: 603 MDMLLAKKRSEDRRNWLQEKG---DMAEIEV 630 +L+ R RR +++ G D+ ++++ Sbjct: 1049 FTVLMG-DRVAPRREFIETYGTKLDLTDLDI 1078 >UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2K9_PHATR Length = 1165 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 165/690 (23%), Positives = 269/690 (38%), Gaps = 90/690 (13%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPNH------------------------LGQEVIDN 42 D T LE V RP MY + + E++ N Sbjct: 2 EDQYSRKTPLEHVLLRPSMYVGSNEKAQPIACWVPDPIPTPPTEELLMKTTSVFDEILVN 61 Query: 43 SVDEALAGH--AKRVDVILHA-----DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 95 + D R+DVI+ D + V +DG+G+PV +H +EG+ E++ L Sbjct: 62 AADNLQRHPDSCTRIDVIIDPGSDNRDPFIRVRNDGKGIPVQVHQKEGMYVPEMLFGHLL 121 Query: 96 AGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAF-ENGEKVQDLQV 152 G F + + +GG HG G + N SK V R Y + N ++ Sbjct: 122 TGSNFDDNEKRLTGGRHGFGAKLTNIFSKSFTVETLDSRKRLKYRQTWSSNMTNASSPEI 181 Query: 153 VGTCGKRNTGTSVHFWPDETFF--DSPRFSVSRLTHVLKAKAVL-CPGVEI-TFKDEINN 208 V T V F PD D+ S+S+ + L + VL G + +N Sbjct: 182 VEVPADATDYTCVSFVPDVARLTNDASALSISKEDYALMCRRVLDVAGCSAGRLRVTLNG 241 Query: 209 TEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYV 268 + DY P + V L E G S+V Sbjct: 242 VDVTM---GSFPDYARLYRKQDSL----PVCFDAINSRWTVGVGL---SETGSFEMVSFV 291 Query: 269 NLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAED-IWDRCAYVLSVKMQDP 327 N + T +GGTHVN + Q ++ ++E E + P V+++++ I ++ +++P Sbjct: 292 NGMATSRGGTHVNSILQQVIKKIQEKIEKTD--PELVQMASQGVIRRHLFVSVAALIENP 349 Query: 328 QFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAEL-LAEMAISSAQRRMRAA--- 383 F Q KE L+S S + ++FI + Q+ + + E +AQ R +A Sbjct: 350 TFDSQMKECLTSSPADFGSSFSLSESFIKSVLQSEEEGGPGIVEEIRRAAQSRQQATLLK 409 Query: 384 ---KKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAI 437 K +++L S P L + + L L EGDSA A R + Sbjct: 410 VIGGKTSKRQLLSIPKLED-AHHAGTKSGSECTLILTEGDSAKALAVAGLEVIGRARYGV 468 Query: 438 MPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-----DDLSQLRYGKICILADAD 492 PL+GK+LN E + ++ + EV + IG+D D ++ +LRYGK+ ++ D D Sbjct: 469 FPLRGKLLNVREAAVSQMAKNAEVTALCAIIGLDFDKTYETIEERRKLRYGKVMLMTDQD 528 Query: 493 SDGLHIATLLCALFVKHFRALVK-------------HGHVYVALPPLYRIDL-----GKE 534 +DG HI L+ F + L+K + + PL + G Sbjct: 529 TDGSHIKGLVMNFFRYFWPNLLKPPVDLQVNDEDETPPFLSSFVTPLLKASKKSSKTGTL 588 Query: 535 VYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDE 594 +Y++ E +K + + K K V+ +KGLG P + RE N L D Sbjct: 589 SFYSMAEYKKWRGSIEAEDFK-KWTVKYYKGLGTSTPAEAREYFSAFNDHFRPFLWNSDI 647 Query: 595 DDQRTDAMMDMLLAKKRSEDRRNWLQEKGD 624 D ++DM+ +R+ DRR W+ + D Sbjct: 648 DG----ELLDMVFDGERAADRRAWILDVYD 673 >UniRef50_Q4UIX0 DNA topoisomerase II, putative n=2 Tax=Theileria RepID=Q4UIX0_THEAN Length = 922 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 205/678 (30%), Positives = 306/678 (45%), Gaps = 121/678 (17%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 T Y++D I VL GL VR+RPGMY T + L EV+DNSVDE LAG R+ V Sbjct: 103 TGEYSSDDIIVLEGLNAVRKRPGMYIGNTGERGVHQLLYEVLDNSVDEYLAGFCNRITVS 162 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN---------------- 102 L D S+EV D+GRG+P DI P+ G +E +L LH+GGKF + Sbjct: 163 LMKDGSVEVSDNGRGIPCDISPKTGKSGLETVLTVLHSGGKFQDIFPPNSTSMSSEDQND 222 Query: 103 --------------KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQ 148 K Y++S GLHGVG+SVVNALS+ + V+V + + Y+I G V+ Sbjct: 223 LKSRKKGEKEHEEKKVYEYSSGLHGVGLSVVNALSELLIVDVYKGPKSYHIELSKGNIVK 282 Query: 149 DLQVVGTCGK--------RNTGTSVHFWPD----------------ETFFDSPR------ 178 L + GT++ F PD E +D+ Sbjct: 283 PLAEFSEPETTEKSNNNLKRYGTTIRFLPDYKNIFKTHHQHTETEKEEDYDTTTNKSGLD 342 Query: 179 ---------FSVSRLTHVLKAKAVLCPGVEITFKDEI------NNTEQRWCYQDGLNDYL 223 F + + K + L PG+ I D E+ + G +L Sbjct: 343 TKCSGCKNGFILELIKTRAKELSYLNPGLSIKLVDYRITDENNEPWEETYRNTGGTRSFL 402 Query: 224 AEAVNGLPTLPEKPFIGNFAG--DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVN 281 E + L + G V+ + W E L + Y N + T+ GTH++ Sbjct: 403 EELIKDKTPLYKPISYITIKGVISNINVEVSFSWSLESYTALIKGYANNVSTIA-GTHID 461 Query: 282 GLRQGLLDAMREFCEYRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR 340 G + + + + VK L+ E I + V+SVK+ +F GQTK +L + Sbjct: 462 GFKISITRCVNGLLKKYGYFKGNVKPLNGEFIREGMTAVISVKLTGAEFDGQTKTKLGNA 521 Query: 341 QCAAFVSGVVKDAFILWLNQNVQAAELLAEM--AISSAQRRMRAAKKVVRKKLTSG-PAL 397 +V + F L N + + A A R AK ++R+K +S + Sbjct: 522 LVKTVTEKIVNEQFTNILENNKELLLAIHNKSQAAKKAFDAARTAKDLIRQKSSSIVSNI 581 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD-EVL 456 GKL +C++ + ELF+VEG+SA G+AKQAR+R++QA++PLKGKILN +++ + +VL Sbjct: 582 SGKLTECSSSKVENNELFIVEGESAAGNAKQARNRQFQAVLPLKGKILNIEKITDNSKVL 641 Query: 457 ASQEVHDISVAIGIDPDS---------------------------------DDLSQLRYG 483 +Q++ + +IGI + DLS+LRYG Sbjct: 642 ENQQIQLLMNSIGISINPVTWRQNDLTEGTHMAMDRFIEMNSSKLTRKQIWLDLSKLRYG 701 Query: 484 KICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID--LGKEVYYALTE 541 KI +L DAD DG H+ +LL L + +L HG VYVA PPLYRI K+ Y+ ++ Sbjct: 702 KIILLTDADVDGSHLKSLLLCLLYRLCPSLYLHGRVYVASPPLYRITNLRNKKYIYSWSQ 761 Query: 542 EEKEGVLEQLKRKKGKPN 559 E +++L K Sbjct: 762 EHLLKTIKELNSKYSPKE 779 Score = 61.5 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 I ++ E + + + + +QRFKGLGEM QL ETT+DP R L + Sbjct: 825 ITKDEKS----DELDLYNINKSFSKNNKHLIIQRFKGLGEMMANQLWETTMDPKKRILKR 880 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + + E ++ +L+ + R+ ++ +E Sbjct: 881 IVVSQE--PEISEIIRLLMGSD-VQSRKQYIFNNSGAFNLE 918 >UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_PBCV1 Length = 1061 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 147/657 (22%), Positives = 251/657 (38%), Gaps = 68/657 (10%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTTRPN------------------------HLGQEVIDNS 43 + LT E V RP Y + P + E+I NS Sbjct: 2 SRYQKLTQREHVLARPDTYIGSVAPQTKNEWVYVDGKIIRKDVTYSPALLKIFDEIITNS 61 Query: 44 VDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK 103 D V + ++S+ V +DG +P++ H E ELI L AG F + Sbjct: 62 ADCYNRDKKLTVLKVCIDEKSVSVHNDGCNIPIEKHDVEKCYIPELIFGHLLAGENFDDT 121 Query: 104 NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGT 163 + G +G+G N SK+ +V + + Y ++EN V V TC K + T Sbjct: 122 EQRTGAGRNGIGSKATNIFSKKFDVEICDGKKKYKQSWENNMSVMSKPKVTTCSKDSYIT 181 Query: 164 SVHFWPDETFFDSPRFSVSRLTHVLKAK----AVLCPGVEITFKDEINNTEQRWCYQDGL 219 + F+PD F F ++ +++ AVL V++ + + +D Sbjct: 182 T-TFFPDFERFGIDSFDDDTMSIMVRRVYDMAAVLNK-VKVMLNGKRLEIKNT---EDYF 236 Query: 220 NDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTH 279 + Y+ P E D A+ E S+VN + T +GGTH Sbjct: 237 SLYVGNKTETKRAFEHTP---------ENWDVAV---SCSDEFTPVSFVNSVVT-RGGTH 283 Query: 280 VNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS 339 VN + + + + + R ++ + +P F QTKE L+S Sbjct: 284 VNAVTDA-----VAKAVVEAAAKKKIVVKPMTVKGRMFVFVNATVVNPTFDSQTKEILTS 338 Query: 340 RQCA-AFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALP 398 R VK A + L+ +Q + + Q+ ++ + +++ P L Sbjct: 339 RNARVTLSDTFVKKAVGVLLDAVIQETNVRTSLV---DQKELKKTDGAKKSRVSGIPKLN 395 Query: 399 GKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEV 455 A L L EGDSA A RE + PL+GK+LN + S + Sbjct: 396 D-AAWAGTNHSKMCTLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASI 454 Query: 456 LASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRAL 513 ++E+ + +G+ D S LRYG + I+ DAD DG HI+ L+ F F +L Sbjct: 455 TKNEEITALKQILGLQTGKVYKDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPSL 514 Query: 514 VK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPM 572 ++ G + + P+ GK+V + + E ++ K K ++ +KGLG + Sbjct: 515 LEIPGFLKKFITPIVVAKKGKDVREFYSLPDYEDWVKTTKDY-SKYQIKYYKGLGTSSST 573 Query: 573 QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + + T D + ++D K R+EDR+ W+ +++ Sbjct: 574 DAKHYFSNLKTLMKTFTWTSD-----SGELIDRSFNKTRAEDRKEWMTAYEPGNQLD 625 >UniRef50_Q9X3Y5 DNA gyrase subunit B (Fragment) n=740 Tax=cellular organisms RepID=GYRB_BACMY Length = 404 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 144/407 (35%), Positives = 222/407 (54%), Gaps = 10/407 (2%) Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG 154 HAGGKF Y+ SGGLHGVG SVVNALS +EV V RDG+++ +E G DL+V+G Sbjct: 1 HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLRVIG 60 Query: 155 TCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR- 212 + TGT F PD F ++ + L ++ A L +++T +D+ + +++ Sbjct: 61 ETDR--TGTITRFKPDSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE 118 Query: 213 WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIP 272 + Y+ G+ Y+ + E+P + + D V+ AL + EG S+ N I Sbjct: 119 FHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGIQVEVALQYN-EGYTNHIYSFTNNIH 177 Query: 273 TMQGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T +GGTH G + L + ++ NIL L+ ED+ + ++S+K +PQF G Sbjct: 178 TYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 237 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEM---AISSAQRRMRAAKKVVR 388 QTK +L + + V +AF +L +N A + + A + +A + R Sbjct: 238 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRR 297 Query: 389 KKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW 448 K +LPGKLADC+++D +E+++VEGDSAGGSAKQ RDR +QAI+PLKGKI+N Sbjct: 298 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 357 Query: 449 EVSSDEVLASQEVHDISVAIGIDP-DSDDLSQLRYGKICILADADSD 494 + D++L++ EV I AIG + + + RY K+ I+ DAD D Sbjct: 358 KARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVD 404 >UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycodnaviridae RepID=C7U0P4_9PHYC Length = 1072 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 135/667 (20%), Positives = 258/667 (38%), Gaps = 78/667 (11%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTTR--------------------------PNHLGQEVID 41 ++++ LT +E V +RP Y + E++ Sbjct: 3 ESVQKLTHIEHVLKRPDSYVGPVEIGCEPYWIFQKTDNQFKKKSLNYSPALLKIFDEILV 62 Query: 42 NSVDEALAGH--AKRVDVILHAD-QSLEVIDDGR--GMPVDIHPEEGVPAVELILCRLHA 96 N++D + + + ++ + ++G G+ V +H +EG+ EL L Sbjct: 63 NAIDRNSLHPKSCTLISAGIDKETGAVTIENNGPLGGVGVRMHEKEGIWNPELTFGHLLT 122 Query: 97 GGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFENGEKVQDLQVVG 154 + + + GG +G G + N S + ++ Q Y + N V + Sbjct: 123 STNYDDNKKRIVGGRNGYGAKLTNIYSSEFSIVIKDGETKQCYTQKWNNNMTVCHPPKIT 182 Query: 155 TCGKRNTGTSVHFWPDETFFDSPRFSVSRLT----HVLKAKAVLCPGVEITFKDEINNTE 210 + S+ F PD F + + V A P ++ F+ E Sbjct: 183 KHSASTSSVSITFIPDWKRFGMNKMDNNIYKIFEKRVWDANICTTPNCKVKFQGEALPKT 242 Query: 211 QRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNL 270 Y + E V+ + ++ W++ P L S+VN Sbjct: 243 SFEAYAK-----MHEGVSEVSSVTTD-------------RWSVCIGPSENGLEQVSFVNG 284 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFA 330 I T +GGTHV+ + + + + + +KL + + + + +++P F+ Sbjct: 285 ICTTKGGTHVDHVASYIASGIIDEMAKK------IKLKPQQVKNTFNIFVKATLENPTFS 338 Query: 331 GQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKK 390 Q K +S+ F+ + E L ++ + ++ + K Sbjct: 339 SQVKSECTSKAQDFGSKFEPPKNFVKNALK-TGIQEELTALSKFKEMKELKKTDGARKSK 397 Query: 391 LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNT 447 +T P L TAQ + L + EGDSA A R++ + PL+GK N Sbjct: 398 ITGIPKLDDANKAGTAQ-SGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNV 456 Query: 448 WEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCAL 505 + S ++ ++QE +D+ +G+ D D+S+LRYG++ I+ DAD+DG HI L+ + Sbjct: 457 RDASVAQLTSNQEFNDLKKILGLQQGKDYQDVSELRYGRLMIMTDADNDGSHIKGLILNM 516 Query: 506 FVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKG 565 + +L+K G V + P+ + G + T+ + ++ +KG Sbjct: 517 IHYFWPSLLKLGFVVSMVTPIIKASKGTQSKSFYTDSAFRSW---YGNGQPGWKIKYYKG 573 Query: 566 LGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-- 623 LG + RE +++ LT+ + D TD + + KK+++DR+ WL E Sbjct: 574 LGTSTSAEAREYF-----KKIQDLTVKFDMDIMTDKSIVLAFDKKKADDRKTWLLESTAK 628 Query: 624 DMAEIEV 630 D E+EV Sbjct: 629 DPKELEV 635 >UniRef50_UPI00016B23A5 DNA gyrase subunit B n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B23A5 Length = 486 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 153/484 (31%), Positives = 244/484 (50%), Gaps = 30/484 (6%) Query: 172 TFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLP 231 F ++ F + + L+ +A L GV + DE + + ++ G+ Y+ G Sbjct: 3 IFKETVNFDYKWVVNYLRHQAYLTKGVYTSVVDERTGERKAFYFEGGIKSYVKNLNIGKE 62 Query: 232 TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAM 291 L E F + V+ A+ + E + + + N + T GGTH+ G R L + Sbjct: 63 VLSEDIFYVEKQIEDCMVEIAVQYNDTYVE-VVKPFANNVLTPDGGTHLVGFRTALTRVI 121 Query: 292 REFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV 350 ++ N+L + L+ +DI + V+ VK+ DPQF GQTK +L + + +V V+ Sbjct: 122 NDYARKNNLLKEKEDNLTGDDIREGLTAVILVKLPDPQFEGQTKNKLGNPEMRRYVDQVM 181 Query: 351 KDAFILWLNQNVQAAELLAEMA---ISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQ 407 + F +L +N A+ + A + + A V+RK G LP KL DC+++ Sbjct: 182 SEYFAYYLEENPATAKKVVGKATLAARARKAARAARDNVIRKGAFEGLNLPSKLTDCSSR 241 Query: 408 DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVA 467 + ELF+VEG+SA GSAK RD QAI+PL+GK+LNT D++ A+ E+ + A Sbjct: 242 NRKDCELFIVEGNSAAGSAKDGRDSTIQAILPLRGKVLNTERARFDKMFANAEIVSLIKA 301 Query: 468 IGIDP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 +G+ D D+S +RY KI + DAD DG HI+TLL F ++ +++ GHVY+A PPL Sbjct: 302 MGVGIGDQFDISGIRYDKIIFMTDADVDGAHISTLLMTFFFRYMSEVIEAGHVYLAKPPL 361 Query: 527 YRIDLG----KEVYYALTEEEKEGVL-----------------EQLKRKKGKPNVQRFKG 565 + + G +++ Y E E L + ++ G QRFKG Sbjct: 362 FGLSKGTGSNRKIDYIYDEAALEEKLTEKINERKAAGVKIDENAERFKQAGYTAQQRFKG 421 Query: 566 LGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 LGEM+ QL ETT++P R LV++ I ED +R DA+ L+ E R+N++Q Sbjct: 422 LGEMDASQLWETTMNPENRTLVKVNI--EDAERADAIFTKLMG-DSVELRKNFIQTNAAK 478 Query: 626 AEIE 629 +E Sbjct: 479 VNVE 482 >UniRef50_Q10XN8 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q10XN8_TRIEI Length = 891 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 166/438 (37%), Positives = 242/438 (55%), Gaps = 16/438 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y A+ I+VL GLE VR+RPGMY TT P +HL EV+DNS+DEALAG+ ++V Sbjct: 3 SNNYGAEQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 62 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+ D S++V DDGRG+PVD H + G A+E ++ LHAGGKF Y+ SGGLHGVG+SV Sbjct: 63 LNKDGSVKVTDDGRGIPVDTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVSV 122 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS-P 177 VNALS+ VEV V RD + + +E G+ DL+ ++ TGTSV F PD+ F + Sbjct: 123 VNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKSKPN-KEKRTGTSVQFLPDQEIFTTGI 181 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEI-------NNTEQRWCYQDGLNDYLAEAVNGL 230 +F + + L+ A L GV+IT D + +CY+ G+ +Y+ Sbjct: 182 QFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNREK 241 Query: 231 PTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 +L E+ + V+ AL W + + N I T+ GGTH+ GL+ L Sbjct: 242 QSLHEEVIFVRGEKNDVQVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLTRT 301 Query: 291 MREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 M RN L L E++ + V+SVK+ +P+F GQTK +L + + V + Sbjct: 302 MNGIARKRNKLKDSDPNLGGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSL 361 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTA 406 V + +L+ N Q A+ + + AI + + RA V RK + LPGKLADC+ Sbjct: 362 VGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCST 421 Query: 407 QDLNRTELFLVEGDSAGG 424 ++ +E++LVEGDSA G Sbjct: 422 KNPEESEIYLVEGDSASG 439 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 93/285 (32%), Positives = 149/285 (52%), Gaps = 5/285 (1%) Query: 346 VSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCT 405 G++ + + + N++ A +E A+ + ++ S L +L Sbjct: 605 TEGLLTEKHLEFHKTNLELAYRCSERDEFLARDIIPNYNDHYNYRVVSIEPLEERLDVYD 664 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 + N L G SAKQ RDR +QAI+PL+GKI+N + ++ + E+ + Sbjct: 665 IEVPNTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKIINIEKTDDAKIYKNNEIQSMI 724 Query: 466 VAIGIDP--DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 A+G+ D D SQLRY K+ I+ DAD DG HI TLL F ++ RALV G++Y+A Sbjct: 725 TALGLGIKGDEFDASQLRYHKVIIMTDADVDGSHIRTLLLTFFYRYQRALVDQGYIYIAC 784 Query: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583 PPLY+++ G+ YY ++ E +++ +QRFKGLGEM P+QL +TT++P T Sbjct: 785 PPLYKVERGRNHYYCYSDRELNELIQNEFPDNANYTIQRFKGLGEMMPVQLWDTTMNPET 844 Query: 584 RRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEI 628 R L ++ I ED D + +L+ R RR +++ G +I Sbjct: 845 RTLKRVEI--EDAAEADRIFTVLMG-DRVAPRREFIETYGPKLKI 886 >UniRef50_C7PPD8 DNA topoisomerase type IIA subunit B region 2 domain protein n=23 Tax=Bacteria RepID=C7PPD8_CHIPD Length = 640 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 185/651 (28%), Positives = 303/651 (46%), Gaps = 74/651 (11%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTD--------TTRPNHLGQEVIDNSVDEALAGHA 52 ++ Y D+I L E +R RPGMY L +EV DN +DE G Sbjct: 9 LSAAYTEDSIRSLDWREHIRLRPGMYIGKLGDGSSMDDGIYILLKEVADNCIDEHTMGFG 68 Query: 53 KRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH 112 K++D+ + + ++ + D GRG+P+ V ++ +++ G K+ +K +Q S GL+ Sbjct: 69 KQIDIRV-TEHNVTIRDYGRGIPLGK--------VVDVVSKINTGAKYDSKAFQKSVGLN 119 Query: 113 GVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDET 172 GVG VNALS V R+G+ FE G ++ + T GT V F PD+T Sbjct: 120 GVGTKAVNALSSYFRVESFREGRGKVAEFERGNLTKEHKEANTSEP--NGTLVTFTPDDT 177 Query: 173 FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPT 232 F + RF L + + L G+ I+F +++ ++GL D L N Sbjct: 178 VFRNYRFIPEFLENQIWNYCFLNAGLTISFNG------KKYISKNGLLDLLQRKTNEDEL 231 Query: 233 LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 + E ++ A+ + GE S+VN T QGGTH+ R+ + +R Sbjct: 232 RYPIIHLK-----GEDIEVAITHENQYGEEYY-SFVNGQHTTQGGTHLAAFREAFVKTLR 285 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS-------RQCAAF 345 +F + A DI +SV++Q+P F QTK +L S AF Sbjct: 286 DFYKK--------DYEATDIRASICAAISVRVQEPVFESQTKTKLGSLTVFENGPSMKAF 337 Query: 346 VSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA--KKVVRKKLTSGPALPGKLAD 403 V + +L++N AE L + S + R A KK+ ++ KL D Sbjct: 338 VLDFLSKHLDDFLHKNPTTAEALKKRIEQSERERKELAGIKKLANERAKKANLHNRKLRD 397 Query: 404 C--------TAQDLN-------RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW 448 C + +D N T +F+ EGDSA GS ++R+ E QA+ L+GK LN++ Sbjct: 398 CRIHLNEEVSGKDKNDLETKRLNTTIFITEGDSASGSITKSRNVETQAVFSLRGKPLNSF 457 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVK 508 ++ V ++E + + A+ I+ L LRY +I + DAD DG+HI LL F++ Sbjct: 458 GLTKKIVYENEEFNLLQHALNIEEG---LEGLRYNRIVVATDADVDGMHIRLLLLTFFLQ 514 Query: 509 HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGE 568 F LVK+GH+Y+ PL+R+ ++ Y T+EE+ ++ +K+ KP + RFKGLGE Sbjct: 515 FFPDLVKNGHLYILETPLFRVRNKQQTIYCYTDEER---IKAIKKLGNKPEITRFKGLGE 571 Query: 569 MNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 ++P + D V L+ D +++ + K ++ R+ ++ Sbjct: 572 ISPDEFANFINDDMKVEPVILS----KDTHIQKLLEYYMGKN-TQTRQEFI 617 >UniRef50_Q59189 DNA topoisomerase 4 subunit B n=27 Tax=Bacteria RepID=PARE_BORBU Length = 599 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 183/637 (28%), Positives = 306/637 (48%), Gaps = 58/637 (9%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTD--------TTRPNHLGQEVIDNSVDEALAGHAK 53 TQ Y+ I L+ LE +R R GMY L +E+IDNS+DE + G+ Sbjct: 3 TQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYGN 62 Query: 54 RVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 + + + + + D GRG+P+ E + ++ G K+++ +QFS GL+G Sbjct: 63 EIFIK-KENNLISIRDYGRGIPLGKVIES--------VSVINTGAKYNDDVFQFSVGLNG 113 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF 173 VG VNALS + V R+G+ + F G+ ++ ++ GT V F D Sbjct: 114 VGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREIK---SSDKDGTYVEFLADSEI 170 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 F +S L A L G+ I + D+I + ++GL D+L + L Sbjct: 171 FGKYSYSEDFLKRRFFHYACLNKGLIINYNDQI------FESKNGLLDFLNSEIKSDDLL 224 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 + + + +++A GE S+VN T GGTH G R+G + A+ + Sbjct: 225 YDIVYYSSK-----TLEFAFSHTNNYGETYF-SFVNGQYTNDGGTHQTGFREGFVRAIND 278 Query: 294 FCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 F + S+ DI + LSVK++DP F QTK +L + + V+ V+ Sbjct: 279 FLKK--------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEVQKI 330 Query: 354 FILWLNQNVQAAELLAEMAISSAQRR--MRAAKKVVRKKLTSGPALPGKLADC------T 405 L ++ A+L+ + + + + R + + +K R++ KL DC + Sbjct: 331 ISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKLKDCKFHFNDS 390 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 ++ +T +FL EGDSA GS RD QAI L+GK N +E + E+ ++E++++ Sbjct: 391 SKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEELYNMM 450 Query: 466 VAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 VA+GI + + LRY K+ I DAD DG HI LL F+ F L+ +GH+Y+ P Sbjct: 451 VALGI---EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHMYILETP 507 Query: 526 LYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 L+R+ K Y +EEEK+ + +L KG V RFKGLGE++P + + +D N+ + Sbjct: 508 LFRVRNKKITTYCYSEEEKQKAILEL---KGGCEVTRFKGLGEISPNEFK-GFIDINSIK 563 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 L ++ + + + + M + + +RRN++ E Sbjct: 564 LTKVDLFNIKEIKEKLGFYM---GQNTPERRNFIMEN 597 >UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C981_THAPS Length = 1179 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 143/690 (20%), Positives = 263/690 (38%), Gaps = 80/690 (11%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTR--------------------------PNHLGQEVI 40 D T LE + RP MY T + E++ Sbjct: 4 EDTYSRKTPLEHILLRPSMYIGPTEHADPKSCSSTNSPWTMQRQELSYVPALLKIFDEIL 63 Query: 41 DNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 N+ D L +D + + ++G+ +P+ IH +E + EL+ L G F Sbjct: 64 VNASDNRLRHPGSCNHFPSSSDPYISITNNGKSIPIQIHRKENMYIPELLFGHLLTGSNF 123 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNV------RRDGQVYNIAFENGEKVQDLQVVG 154 ++ + +GG HG G + N SK+ V + + + Y +E+ V V Sbjct: 124 NDDQKRLTGGRHGYGAKLTNVFSKQFVVEIGDGHSSKGKIKTYKQVWEDNMSVCHEAEVV 183 Query: 155 TCGKRN-------TGTSVHFWPDETFFD---SPRFSVSRLTHVLKAKAVLCPGVE-ITFK 203 + K++ T + F PD ++K + V G Sbjct: 184 SRDKKDADGKGNLDYTRISFIPDLARLTGDRKTEMLPEEEYQLMKRRVVDIAGCSGGKLT 243 Query: 204 DEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELL 263 +N E G DY + P + + + A+ L E L Sbjct: 244 VTLNGEEISVS---GFEDYANLYRQPESSATPLPPMV-YHKLNSRWEVAVG-LSETKSLE 298 Query: 264 TESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR------NILPRG-VKLSAEDIWDRC 316 + S+VN + T +GGTHV+ L + + + + + N+ + +S + Sbjct: 299 SISFVNGMNTSRGGTHVDALARQISQYIADHINNKMARQLDNLQSGQPISVSVRMVRRHL 358 Query: 317 AYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA 376 ++ +++P F Q KE L+S + ++F+ L E + MA+ + Sbjct: 359 FLCVNCLIENPSFDSQMKECLTSNPDNFGSHFELSNSFLRKLVG-PGIVEEVLRMAMGAQ 417 Query: 377 QRRM-RAAKKVVRKKLTSGPALPGKLADCTAQDL---NRTELFLVEGDSAGGSAKQAR-- 430 Q M R K+ ++++ S P L + D+ N L L EGDSA A Sbjct: 418 QVNMARLLKEQTKRQVLSIPKLED-ANLAGSTDIGTENPCTLILTEGDSAKALAVAGLEV 476 Query: 431 -DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-----DDLSQLRYGK 484 R++ + PL+GK +N V+ ++ + E+ + +G+ + + +LRYG Sbjct: 477 VGRDHYGVFPLRGKFMNVRNVTVKQLATNAELKAMCAILGLQFEKSYDTAKERQELRYGH 536 Query: 485 ICILADADSDGLHIATLLCALFVKHFRALVK---HGHVYVALPPLY---RIDLGKEVYYA 538 + ++ D D+DG HI L+ +F + AL+K + + + PL + K+ Sbjct: 537 VMLMTDQDADGSHIKGLIMNMFRFFWPALLKPPSRPFMSMFITPLLKATKKGKKKDSISF 596 Query: 539 LTEEEKEGVLEQLKRKK--GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDD 596 + E E L+ + K V+ +KGLG P + ++ L +++D Sbjct: 597 FSVAEYNSWRESLEDEDEISKWTVKYYKGLGTSTPTEAKDYFLSFVRHYRPFKWQSEKND 656 Query: 597 QRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 +DM K R+ DR++W+ + D Sbjct: 657 G---ERIDMAFEKDRANDRKDWILTEYDEK 683 >UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginalis RepID=Q6RCM1_TRIVA Length = 1458 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 141/663 (21%), Positives = 259/663 (39%), Gaps = 71/663 (10%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTT-------------------------RPNHLGQEVIDN 42 + LT E V RP Y + + E++ N Sbjct: 15 EQYVKLTHREHVLTRPDSYIGSIEPRECKMWVCNEDGKFEFREISYVPGLYKIFDEILVN 74 Query: 43 SVDEALAGH-AKRVDVILHA-DQSLEVIDDGRGMPVD--IHPEEGV--PAVELILCRLHA 96 + D + + + V +DG+G+ P + E I +L Sbjct: 75 AADNKQRDPPLTTIKGEVDPAQNRISVWNDGKGISTQKQFSPNDNCEYYIPEFIFSQLLT 134 Query: 97 GGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVG 154 +++K + +GG +G G + N SK+ +N+ +G Y + + Sbjct: 135 SSNYNDKQEKVTGGRNGYGAKLANIFSKKFHINIYNADEGINYQQTITDNMTNIQPPKLK 194 Query: 155 TCGKRNTGTSVHFWPDETFFDSPRFS---VSRLTHVLKAKAVLCPGVEITFKDEINNTEQ 211 + + T + FWPD F+ + V + + A + P V+I + ++ Sbjct: 195 NGKGKGSYTEISFWPDLERFNLQTITKDHVDLIRRRVYDLADILPKVKIFWNGNQVPIKK 254 Query: 212 RWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGG-ELLTESYVNL 270 ++D YL E V KP + + W + P E S+VN Sbjct: 255 ---WEDYCKVYLKEDV--------KPLVCEVKNEK-GYTWKIGVAPSKSREFQQISFVNC 302 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFA 330 + T GGTHV+ + + + ++ + R V+ + + + + +P F Sbjct: 303 VATSNGGTHVDVVVNQITKYITDYLKNRRSGK--VETKPSVVKNFLYVFVDSLVINPSFD 360 Query: 331 GQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKK 390 QTKERL+ Q + D F+ + + L+ E A QR++ K + + Sbjct: 361 SQTKERLTLDQKKLKDDCKLPDNFLDKILK-TDIVALVTEYANFKEQRKVANMKGTKKGR 419 Query: 391 LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNT 447 L + + L L EGDSA +A R+Y + PL+GK+LNT Sbjct: 420 L--IINKLEDANMAGKAESLKCTLILTEGDSAKATAVTGLATIGRDYYGVFPLRGKLLNT 477 Query: 448 WEVSSDEVLASQEVHDISVAIGIDP-----DSDDLSQLRYGKICILADADSDGLHIATLL 502 ++S+ ++ + E+ +I +G+DP + D + +LRYG I I+AD D DG HI L+ Sbjct: 478 RDISAKKLSENDEIQNIIKIMGLDPMEKYENDDSMKRLRYGSIMIMADQDVDGSHIKGLI 537 Query: 503 CALFVKHFRALV-KHGHVYVALPPLYRIDLGKEV---YYALTEEEKEGVLEQLKRKKGKP 558 + L+ K + + P+ ++ G T E KG Sbjct: 538 INFVHSMWPNLLKKRNFITEFITPIVKVTKGNNKKGAISFFTIPEFSQWKAANNNGKG-Y 596 Query: 559 NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 ++ +KGL + +E + + + V + ++ D++R +++ AKKR++DR+NW Sbjct: 597 KMKYYKGLATSTAEEAKEYFSNISKHKKVFIYTNENDEER----INLAFAKKRADDRKNW 652 Query: 619 LQE 621 L + Sbjct: 653 LAQ 655 >UniRef50_Q44272 DNA gyrase subunit B (Fragment) n=2942 Tax=cellular organisms RepID=GYRB_ACIG9 Length = 390 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 145/393 (36%), Positives = 214/393 (54%), Gaps = 10/393 (2%) Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNT 161 + +Y+ SGGLHGVG+SVVNALS+++E+ + R G+++ + +G+ L+VVG + T Sbjct: 1 DNSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDTNR--T 58 Query: 162 GTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLND 221 GT V FWP F F+V L L+ + L GV I +DE N E + Y+ GL++ Sbjct: 59 GTRVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERINAEHVFDYEGGLSE 118 Query: 222 YLAEAVNGLPTLPEK-PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHV 280 ++ G L + F A + V+ AL W + + N IP GGTH+ Sbjct: 119 FVKYINEGKTHLNDIFHFTAAQADNGITVEVALQWNDS-YQENVRCFTNNIPQKDGGTHL 177 Query: 281 NGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS 339 G R L + + + NIL + V +S +D + ++SVK+ DP+F+ QTKE+L S Sbjct: 178 AGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVS 237 Query: 340 RQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI---SSAQRRMRAAKKVVRKKLTSGPA 396 + V + AF +L +N QAA+ +A I + +A + RK Sbjct: 238 SEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAG 297 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVL 456 LPGKLADC +D +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN D ++ Sbjct: 298 LPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMI 357 Query: 457 ASQEVHDISVAIGIDPDSD--DLSQLRYGKICI 487 +S EV + A+G + + +LRY KI I Sbjct: 358 SSAEVGTLITALGCGIGREEYNPDKLRYHKIII 390 >UniRef50_B9U3G6 DNA topoisomerase 2 (Fragment) n=1 Tax=Pleurotus djamor RepID=B9U3G6_PLEDJ Length = 735 Score = 437 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 112/577 (19%), Positives = 215/577 (37%), Gaps = 73/577 (12%) Query: 111 LHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW 168 +G G + N S + + + + Y+ + + G+ T V F Sbjct: 1 RNGFGAKLANIYSHEFTIETADKTNEKKYSQTWTKNMTQVGKAKITKNGRGEEWTKVTFK 60 Query: 169 PDETFFDSPRFSVSR---LTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAE 225 PD F L + A V++ DE + Y+ Sbjct: 61 PDLARFGMTHIDPDTAGLLRKRVYDMAGTVKDVKVYLNDERLKVKN-------FKQYVEM 113 Query: 226 AVNGLPTLPEKPFIG------NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTH 279 ++ ++ G + + + W + + G S+ N I T++GGTH Sbjct: 114 YLDSAAADAKENSGGAAQAKASIIYEQISPRWEVGFATSDGTFQQVSFANSISTIKGGTH 173 Query: 280 VNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS 339 VN + L + +N +G + I + ++ +++P F QTKE L+ Sbjct: 174 VNYISDQLAKNLIAAITKKN---KGAAVKPAQIKNHMWIFVNALIENPTFDSQTKETLTL 230 Query: 340 RQCAAFVSGVVKDAFILW---------------LNQNVQAAELLAEMAISSAQRRMRAAK 384 + + F+ L Q + + A A ++++ Sbjct: 231 PASKFGSRPTLSEEFMKKGCVPIVLVVLSSYRLLVQKSSIIDQVLNWAKFKADQQIKKTD 290 Query: 385 KVVRKK--------------LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR 430 R + + +G A + + + L L EGDSA A Sbjct: 291 GSKRTRYFHSHSTEFVLNSIIVTGMAKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGL 350 Query: 431 ---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKI 485 R+ + PL+GK+LN E D+V+ ++E+ +I +G+ + + ++S LRYG++ Sbjct: 351 AVVGRDNFGVFPLRGKLLNVREARHDQVMKNEEIQNIKKIMGLQHNKEYSNVSSLRYGRL 410 Query: 486 CILADADSDGLHIATLLCALFVKHFRALVKHG-HVYVALPPLYR------------IDLG 532 I+ D D DG HI LL + +L+K + + P+ R + G Sbjct: 411 MIMTDQDHDGSHIKGLLINFLDHFYPSLLKIPEFLVEFVTPIVRVSIFHQCQIPPHVTKG 470 Query: 533 KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTID 592 + T E E +E K K + +KGLG + RE + + T++ Sbjct: 471 SQRKNFFTIPEYEQWIESTPDSK-KWTAKYYKGLGTSSDADAREYFSKMSKHMIPFATME 529 Query: 593 DEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 DE+ ++D+ +KK+++DR++WL++ ++ Sbjct: 530 DEERP----LIDLAFSKKKADDRKDWLRQFKPGTYLD 562 >UniRef50_A7ASL8 DNA gyrase subunit B, putative n=1 Tax=Babesia bovis RepID=A7ASL8_BABBO Length = 944 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 162/543 (29%), Positives = 265/543 (48%), Gaps = 75/543 (13%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y+ D I VL GLE VR+RPGMY T + L E++DNSVDE LAG ++ V L Sbjct: 148 SEYSTDDIVVLQGLEAVRKRPGMYIGNTTETGLHQLLFEILDNSVDEYLAGCCNKITVTL 207 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN----------------- 102 AD S E+ D+GRG+P D+ + G +E +L LH+GGKF++ Sbjct: 208 RADGSAEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFNDTTSKPTPEDQVDEFYDT 267 Query: 103 -----------------------KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNI 139 Y+++ GLHGVG+SVVNALS + +V + + Y+I Sbjct: 268 HISRKFRSQHVRGLRKRLKDASSNPYEYASGLHGVGLSVVNALSAWLRADVYKGTKQYSI 327 Query: 140 AFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR---------------FSVSRL 184 G + L V C KR TGT++ F PD F+ + Sbjct: 328 QLSRGMVTEPLS-VSKCAKR-TGTTISFMPDYDHVFIAHHDHQVDTECPGCASAFNHDTV 385 Query: 185 THVLKAKAVLCPGVEITFKDEI------NNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 + ++ + + P + + DE + E+ + ++ G ++L + + L + Sbjct: 386 RNRIEELSYVNPMLTLRLVDERLVNEDGSFHEETFMHKGGTREFLQDIIKDRVPLYKSAN 445 Query: 239 IGNFAGDTEAVDWALL--WLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 I N G + V+ + W E + + N + T GTH+ G + + A+ C Sbjct: 446 IINIRGKSGGVEVEVSLSWAAETYAAQLKGFANNVSTSA-GTHIEGFKAAITKAVNHACR 504 Query: 297 YRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 + + +S E I + ++SVK+ +F GQTK +L ++ V +V Sbjct: 505 RAGLFKHKAPSISGEFIREGLTAIISVKLMGAEFDGQTKSKLGNQIARTAVERIVSYQMN 564 Query: 356 LWLNQNVQAAELLAEMAISSAQR--RMRAAKKVVRKKLTS--GPALPGKLADCTAQDLNR 411 L ++ Q + +I++ + + AK++VR+K + LP KL+DCT+ D+ Sbjct: 565 EILEKHPQLLTAIYNKSIAAKRAFEVAKHAKELVRQKNANFLTTGLPAKLSDCTSNDIGL 624 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD-EVLASQEVHDISVAIGI 470 TELF+VEG+SA G+AKQAR+R +QA++PLKGKILN ++SSD +V+ ++E+ + +IG+ Sbjct: 625 TELFIVEGESAAGNAKQARNRRFQAVLPLKGKILNIEKISSDLKVMENEEIKLLISSIGL 684 Query: 471 DPD 473 + Sbjct: 685 AVN 687 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 39/185 (21%) Query: 480 LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKE----- 534 LRYGKI +L DAD DG H+ LL L + L +HG VY+A PPLYRI ++ Sbjct: 758 LRYGKIILLTDADVDGAHLRILLLGLLFRICPQLYEHGRVYIACPPLYRITNMRKGNKAR 817 Query: 535 -------VYYALTEEEKEGVLEQL------------------------KRKKGKPNVQRF 563 YA +EEE + + VQRF Sbjct: 818 NGPNASAYTYAWSEEELPIAINKEMAPYNLDSVPSEDIADTEQTPEIKPDSMRGITVQRF 877 Query: 564 KGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG 623 KGLGEM QL +TT++P+ R L ++++ +D R M+++L+ + R+ ++ Sbjct: 878 KGLGEMMAQQLWDTTMNPDKRILRRISV--QDGMRASKMLELLMGGD-VQSRKEFIFTHA 934 Query: 624 DMAEI 628 D ++ Sbjct: 935 DAFQL 939 >UniRef50_A1EGM8 DNA gyrase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=A1EGM8_9BACT Length = 428 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 167/433 (38%), Positives = 235/433 (54%), Gaps = 23/433 (5%) Query: 88 ELILCRLHAGGKFSNK----NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFEN 143 E+I+ LHA GKF N+ Y+ SGGLHGVG SVVNALS R+ + ++RDG ++ F Sbjct: 1 EVIMTVLHAAGKFDNETGESAYKTSGGLHGVGASVVNALSTRLTMEIKRDGFTWHQEFRG 60 Query: 144 G-EKVQDLQVVGTCGKRNTGTSVHFWPDETFF------DSPRFSVSRLTHVLKAKAVLCP 196 G E V +L + R GT++ FWPD T F D F R+ L +A L P Sbjct: 61 GGEPVAELAMGKPS--REHGTTIRFWPDPTIFVPEEGQDPLSFDKERVARSLSTRAHLNP 118 Query: 197 GVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLW- 255 G+ IT DE + +EQ W + + L + P A DT+ ++ Sbjct: 119 GLAITMIDERDGSEQTWKAES-FAEILDDLATVSSAPVFGPLSETAAVDTDKGRVEVMVA 177 Query: 256 --LPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIW 313 + SY N I T QGGTH G+R LL A+ + + +L L+AED+ Sbjct: 178 LRVHAERASTIASYANNIVTPQGGTHEAGMRSALLKAINAYGKTNGLLKE--PLTAEDVQ 235 Query: 314 DRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI 373 + ++V++ +P FAGQTK++L++ +C V VV +N + A+ L A Sbjct: 236 EGLVAAVAVRVTEPLFAGQTKDKLANTECTGAVMQVVYRLLSKHFEENPKDAKNLINRAA 295 Query: 374 SSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR 430 +A+ R A K V RK SG LPGKLADC D + EL++VEGDSAGGSAKQ R Sbjct: 296 LAAKARAAAEKARELVERKNPLSGGGLPGKLADCQESDPSLCELYIVEGDSAGGSAKQGR 355 Query: 431 DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP-DSDDLSQLRYGKICILA 489 DR++QAI+PLKGK LN + + L SQE+ +I+ +G ++ D+S+LRY ++ I+ Sbjct: 356 DRKFQAILPLKGKPLNVMKYDMGKALKSQEISNITTVLGCGVLNTFDISKLRYHRVIIMT 415 Query: 490 DADSDGLHIATLL 502 DAD DG HI TLL Sbjct: 416 DADVDGSHIRTLL 428 >UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO Length = 1417 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 158/667 (23%), Positives = 293/667 (43%), Gaps = 53/667 (7%) Query: 8 DAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQS 64 ++ L G E VR+R + + H E++ NS+D G + VI H D S Sbjct: 2 ADLKRLKGSERVRKRVSVMMGSDDIRGCQHTLFEIVSNSIDRHRKGFGNYIKVIKHEDLS 61 Query: 65 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 +ID G+P+D + +E +L L L+AG + + + G++G+G+ S+ Sbjct: 62 YTIIDHADGLPMDWNDKENAYNWDLALKVLYAGDNYDANS--TALGINGLGLCSSQYASE 119 Query: 125 RVEVNVRRDGQVYNIAFENGEKVQDLQ---------------------VVGTCGKRNTGT 163 +EV +D + Y + + G + +V + + TGT Sbjct: 120 YMEVVSYKDDKKYTVKCKKGRPIDKNTGEFICEDDDTLFAREQGQRVLLVESNSENKTGT 179 Query: 164 SVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL 223 +H+ PD F + S+ + L +A++ ++I DE + Y+ G+ DY+ Sbjct: 180 YIHYKPDLEVFTNIDISIDWINDKLDKQAMVNKELKIEVYDEKEDKLYTHYYESGIKDYI 239 Query: 224 AEAVNGLPTLPEKPFIGNFAGDTEAVD-------WALLWLPEGGELLTESYVNLIPTMQG 276 ++ + + + VD + + + E Y N +QG Sbjct: 240 K-TISDDNNFSDVIYFTEKGKGRDKVDKPEYDYNYEIALVFNNEINKLEYYHNSSELLQG 298 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 G+ + + A+ E+ + N+ + K+ DI D V+S +A QTK Sbjct: 299 GSTADAINLAFTYAINEYAKDNNLFNKNESKIKFTDIQDSLICVISSFSTMTSYANQTKL 358 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT--- 392 + ++ F + +K+ L+ +N A + + + + +A K + K T Sbjct: 359 SIDNKFIKDFTNQSLKEKLKLYFIENKLEAGRIVNQILINKRANDKAEKTKLNIKKTLQT 418 Query: 393 -SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVS 451 S CT+ D + TEL+L EG SA GS R+ ++QA + GK+L+ + Sbjct: 419 KSNFDDTDNFYACTSNDKSITELYLAEGSSAQGSIVMGRNSKFQACYHVGGKMLSLLKAD 478 Query: 452 SDEVLASQEVHDISVAIGIDP----------DSDDLSQLRYGKICILADADSDGLHIATL 501 +++ ++ V ++ +G ++ D + L Y KI + D D+D I L Sbjct: 479 FEKIFKNKVVRELFQYLGCGIEIKSKHNKDLNTFDENNLNYSKIILATDQDTDAFQIRCL 538 Query: 502 LCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNV- 560 + + L+KHG+VY+A PLY I +VY+A TEEEK +LE+L +K K + Sbjct: 539 MLTAIYRLAPTLIKHGYVYIAESPLYEITTADKVYHAYTEEEKITILEELSKKGIKYDKP 598 Query: 561 QRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 +R KGLGE++ + ET ++P TR++ ++T+ +D ++ ++ L + + R+ + Sbjct: 599 ERNKGLGEVDSDIIAETMMNPKTRKITRVTV--QDVEKMANTFELWLGDE-VKPRKEVIT 655 Query: 621 EKGDMAE 627 D E Sbjct: 656 SNFDYIE 662 >UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepID=C9S837_VERA1 Length = 1688 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 128/662 (19%), Positives = 254/662 (38%), Gaps = 117/662 (17%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + + LT LE + +RP Y + + E++ Sbjct: 123 EETYQKLTQLEHIVKRPDTYIGSVERTEMPMWVYNKETQLMEFRKVTTVPGLYKIFDEIL 182 Query: 41 DNSVD------EALAGHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCR 93 N+ D E+ + V + + + + ++G+G+PV++H + Sbjct: 183 VNAADIKVRREESGEEPVTHIKVNIDREAGQISIENNGKGIPVEMHKQ------------ 230 Query: 94 LHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVV 153 HG+ +N K+ ++ Sbjct: 231 ------------------HGI-----------------------YTWTDNMSKMGKAKI- 248 Query: 154 GTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRW 213 T K + + F PD F L +L + G K +N T + Sbjct: 249 -TSSKSSDFVRITFKPDFKRFSMEGID-DDLEALLYRRVYDMAGTIKGIKVHLNGTVVKP 306 Query: 214 CYQDGLNDYLAEAVNGLPTLPE--KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLI 271 G ++ A+A+ E +P + + W + + G S+VN I Sbjct: 307 SAFKGYSEMYAKAIAKERASEEGGEPKVTVEMDKNDNPRWDVGFTVSDGSFQHISFVNNI 366 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T GGTHVN + ++ + ++ + + +G L + I + ++ ++++P F Sbjct: 367 ATTSGGTHVNYVADQIVQYLTKYLDKK---KKGHALKPQHIRNHIFVFINCRIENPSFNS 423 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL 391 QTKE+++++ + V+ +AF+ + + A + + A A + M + R ++ Sbjct: 424 QTKEQMTTKISSFGSKCVLSEAFLKKVAAS-DAIQNIMSFAEKKADKMMAKSDGNRRSRI 482 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTW 448 + + L + + L L EGDSA A R D + + PL+GK+LN Sbjct: 483 NNAKLVDANL--AGTKRGHECTLILTEGDSAKSLAVAGRAILDPDRIGVFPLRGKMLNVR 540 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALF 506 + S +++ +QE+ +I +G+ + D LRYG + I+AD D DG HI LL Sbjct: 541 DASIEQITKNQEIQNIKQFLGLKHKQNYTDTKGLRYGHLMIMADQDHDGSHIKGLLINFL 600 Query: 507 VKHFRALVKHG-HVYVALPPLYRIDLGK------EVYYALTEEEKEGVLEQLKRKKGKPN 559 + +L++ + P+ ++ GK ++ T+ + E E K + + Sbjct: 601 QVQYPSLLQIPDFFREFITPIVKVWQGKNPKNPQKLQAFFTQPQYEEWKEAHKNEISRWE 660 Query: 560 VQRFKGLGEMNPM--QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRN 617 + +KGLG + Q+ T LD + + + + D + D+ +KK+++ R+ Sbjct: 661 YKYYKGLGTSSNEDAQVYFTNLDDHLKEFDTMQSSEAD------LFDLAFSKKKADARKE 714 Query: 618 WL 619 WL Sbjct: 715 WL 716 >UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NA12_PHYIN Length = 1505 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 134/692 (19%), Positives = 240/692 (34%), Gaps = 126/692 (18%) Query: 10 IEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVIDNS 43 + T LE + RP Y + + E+I N+ Sbjct: 102 YQKKTQLEHILLRPDTYVGSIEHVEQSMWVFDDEKQRMVLKKINYVPGLYKIFDEIIVNA 161 Query: 44 VDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS 101 D + V + + + V ++G+G+P+ +H E V ELI L G F Sbjct: 162 CDNKQRDKSMNTLKVTIDVEKNEISVWNNGKGIPIVLHKEHKVYVPELIFGHLLTGSNFD 221 Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCGKR 159 +K + +GG +G G + N S V Q Y FE+ ++ + ++ Sbjct: 222 DKKKKTTGGRNGYGAKLANIFSNEFVVETADSSTKQKYKQVFESNMSKKNPPSITKWAQK 281 Query: 160 NTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGV-----EITFKDEINNTEQRWC 214 + T + F PD F F + + K + GV + + + Sbjct: 282 D-FTCISFKPDLERFKL-DFLNDDIVSLFKKRVYDVAGVSGKGMNVFLNGDKIPIKSFPQ 339 Query: 215 YQD---GLNDYLAEAVNGLPTLPEKPFIGNFAG--------------------------- 244 Y G Y A+ + Sbjct: 340 YVALYPGPRGYEADKDKDDEDAHPDENGDDDDEDYSEDKAKKAKAARAKPSNVTKNGVIF 399 Query: 245 DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRG 304 + W + HV+ + + + + +N +G Sbjct: 400 EKPDERWQVGVGMSEDGFQQ--------------HVSYIVDQITAKLVSVLKKKN---KG 442 Query: 305 VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQA 364 + I + +S + +P F QTKE L++R + + + D F+ L ++ Sbjct: 443 EAVKPNYIKNHMFVYVSALIDNPAFDSQTKETLTTRANSFGSTFNLSDKFLKQLEKSGLV 502 Query: 365 AELLAEMA-ISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAG 423 ++L+ A +A+ R + R +LT P L TA+ L L EGDSA Sbjct: 503 EKILSFAAFKQTAELRRKGGSSGKRSRLTGIPKLDDANHAGTAK-SKDCTLILTEGDSAK 561 Query: 424 GSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI--DPDSDDLSQLR 481 +L ++E+ ++ +G+ + LR Sbjct: 562 T------------------------------ILKNEEIQNVVKILGLKYGQKYESTKGLR 591 Query: 482 YGKICILADADSDGLHIATLLCALFVKHFRALV-KHGHVYVALPPLYRIDLGKEVYYALT 540 YG + I+AD D DG HI L+ L + +L+ G + + P+ + G+ T Sbjct: 592 YGHLMIMADQDHDGSHIKGLVINLIHHFWPSLLVVDGFLQEFITPIVKCTKGRTKEVFYT 651 Query: 541 EEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTD 600 E E E+ + +G ++ +KGLG + +E D T + + T D + D Sbjct: 652 MPEYEAWRERTNQGRG-WVIKYYKGLGTSTAAETKEYFSDLQTHQ-IGFTYDGDGDA--- 706 Query: 601 AMMDMLLAKKRSEDRRNWLQ--EKGDMAEIEV 630 ++DM +KKR EDR++WL+ E G + +V Sbjct: 707 DVIDMAFSKKRVEDRKDWLRGYEPGTYVDYDV 738 >UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 Tax=Caenorhabditis RepID=TOP2M_CAEEL Length = 1054 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 126/580 (21%), Positives = 228/580 (39%), Gaps = 34/580 (5%) Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L + V ++G G+PV+IHP EG+ L+ L + + + GG +G G + Sbjct: 9 LRETARISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNYDDSEIKTVGGRNGYGAKL 68 Query: 119 VNALSKRVEVNV--RRDGQVYNI-AFENGEKVQDLQVVGTCGKR-NTGTSVHFWPDETFF 174 N SK V R + + ++N +K + +VV + T V F PD F Sbjct: 69 CNIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILDETVKDYTKVEFVPDLERF 128 Query: 175 DSPRFS---VSRLTHVLKAKAVLCP-GVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGL 230 + S + + + A P V++ + C DG DY+ + Sbjct: 129 QIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQK-------CDVDGFEDYVKMFNDSS 181 Query: 231 PTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 L P G A S+VN I T +GG+HV+ + +++ Sbjct: 182 SLLFLHPTPRWHVG--VAKRNNFFGESHVVLPKIVSFVNNINTEKGGSHVDYVMDKIVNI 239 Query: 291 MREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF-VSGV 349 ++ + + P + I + + ++ +++P F QTKE L+++ + Sbjct: 240 IKPIVDSKLGDPTK-SVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKAKNFGSIFEC 298 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 409 W Q+ +++ E + + +++ K+V + L Sbjct: 299 DAKKTAEWAEQSGLIEDIVEE--VLNMKKKKLPGKRVSVSSVRDIVKLEDAEWAGITGTA 356 Query: 410 NRTELFLVEGDSAGGSAKQA---RDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 466 + L L EGDSA A RE + PLKGK+LN + ++E+ ++ Sbjct: 357 EKCTLILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKNEEISNLLR 416 Query: 467 AIGIDPDSDDL---SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVA 522 +G+ + + LRYG++ ILAD D DG HI L+ K + +LV G + Sbjct: 417 ILGLKFEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQSF 476 Query: 523 LPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582 PL + G +V + E + + GK ++ +KGLG + RE D + Sbjct: 477 RTPLLKAKKGDKVRSFFSMNEYRKWAD--VEEGGKWKIKYYKGLGTSTSNEAREYFSDLD 534 Query: 583 TRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 + DD + M + +S++R+ W++ Sbjct: 535 HHTVNFKYTGTTDD----DAIRMAFDRDKSDERKEWIRRS 570 >UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae RepID=TOP2_CRIFA Length = 1239 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 131/670 (19%), Positives = 253/670 (37%), Gaps = 61/670 (9%) Query: 6 NADAIEVLTGLEPVRRRPGMYTDTTRPN--------------------------HLGQEV 39 +A + LT ++ V RP MY + + E+ Sbjct: 3 DASKYQKLTPIDHVLLRPEMYVGSIETQSIPMFVFDPAKGKMVWESMQVNQGLLKIVDEI 62 Query: 40 IDNSVDEALAG----HAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 95 + N+ D + + + + V +DG G+P+ E + E++ L Sbjct: 63 LLNAADNINNSVRGARMTYISIKISDSGEIMVENDGAGLPIVKSKEHKMYIPEMVFGHLL 122 Query: 96 AGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGT 155 ++N + G HG G + N LS + V R G+ +++++ + ++ V Sbjct: 123 TSSNYNNDASSTTAGRHGYGAKLTNILSTKFSVVCRTAGREFHMSWTDHMRMATTPRVSN 182 Query: 156 CG-KRNTGTSVHFWPDETFFDSPRFSVS-RLTHVLKAKAVLCPGVEITFKDEINNTEQRW 213 K T V F PD F P ++S + VL + + + + +NN + Sbjct: 183 VDPKEKNVTRVTFMPDYAHFGFPTAAISLDMKRVLHKRIMDLAAMFSKIEVRLNNVPFGF 242 Query: 214 C-YQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIP 272 + D Y +P +PF+ + A + VN + Sbjct: 243 QTFNDYARLY--SLPGADGAMPPEPFVHTGPNGS----IAFVPQLTQSPKRIVGVVNGVV 296 Query: 273 TMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQ 332 T GGTH + L + R++ G + + ++ + P+F Q Sbjct: 297 TYNGGTHCTSAMEILETGLDSL--SRSLKKDGKVIDTNRVARHFTVLVFLIQSQPKFDSQ 354 Query: 333 TKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT 392 +K RL S + V + A +L + M A + R Sbjct: 355 SKARLVSTVT---MPRVPRTALDQYLAAMPFLEAHMNSMDDQLAAELNKEIGTGKRLSSR 411 Query: 393 SGPALPGKLADCT---AQDLNRTELFLVEGDSAGGSAKQARDRE---YQAIMPLKGKILN 446 S + KL D T + N L + EGDSA A + E + + PL+GK+LN Sbjct: 412 SLISSITKLVDATSSRSDGKNIRTLIVTEGDSAKALALNSLSSEQKKFCGVFPLRGKLLN 471 Query: 447 TWEVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCA 504 + + +E+ D+ +A+G++ ++LRY ++ ++ D D+DG HI L+ Sbjct: 472 VRNKNLKRLKTCKELQDLFLALGLELGKTYKSPAELRYQRLLVMTDQDADGSHIKGLVIN 531 Query: 505 LFVKHFRALVKH--GHVYVALPPLYRID-LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQ 561 F + +L++H G++ + P+ +I GK ++ Q + + + Sbjct: 532 AFESLWPSLLQHNPGYISLFSTPIVKIKVNGKAKEVVAFHSFRDFHRWQRANPNARYSAK 591 Query: 562 RFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 +KGLG + +E D R +++L ++ +D + D++ D E R+ W+ + Sbjct: 592 YYKGLGTSTTAEGKEYFADME-RNVMRLVVEPKDHRLLDSVFDSA----EVEWRKEWMSK 646 Query: 622 -KGDMAEIEV 630 E+++ Sbjct: 647 ANAFQGEVDI 656 >UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV Length = 1263 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 134/713 (18%), Positives = 248/713 (34%), Gaps = 108/713 (15%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT------------------------------RPNHLG 36 + + E + P Y + + Sbjct: 15 EEKYQKKNLHEHILHSPDTYIGSIEEKTCNMWIFNESAGEDDAKIIFKEITYVPGLYKIY 74 Query: 37 QEVIDNSVDEALA-GHAKRVDVILHA-DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRL 94 EVI N+ D + V + + V ++G G+ V IH E + +I L Sbjct: 75 DEVIVNAADHNKRCQTCNIIKVDIDQKTGQISVWNNGDGIDVAIHKEHNIWVPSMIFGEL 134 Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQV 152 + + GG +G G + N S + G+ + F N ++ Sbjct: 135 LTSTNYDKNEEKTVGGKNGFGAKLANIYSVEFTIETVDANKGKKFFQRFTNNMYDKEEPK 194 Query: 153 VGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR 212 + + K+++ T + F PD F L L K V + K N+ + Sbjct: 195 I-SSFKKSSYTKITFIPDFKKFGLKCLDDDTLA--LFKKRVFDLAMTTNAKVYFNDKQIV 251 Query: 213 WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGEL---LTESYVN 269 Q+ Y+ PE DT W + + + + S+VN Sbjct: 252 ---QNNFKKYVGLY------FPEGSQHKVVIDDTTHERWKVGVIYDPTDQLEHQNISFVN 302 Query: 270 LIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQF 329 I T +GGTHV + +++ ++ + + V++ I + + + + +P F Sbjct: 303 SICTSRGGTHVEQVVGQIVNGLKTAIVKK---AKNVQIKPAMIKENLIFFVDATIVNPDF 359 Query: 330 AGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRK 389 QTKE L+ + V + FI + + +++ A + A+ +K + Sbjct: 360 DTQTKEYLTKKAANFGSKFEVTEKFIKGVIKTGVCDQII---ANAKAREEANLSKTDGKG 416 Query: 390 KLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILN 446 + ++ + L L EGDSA A + R+Y + PL+GK+LN Sbjct: 417 RGPVRYEKLYNAHKAGTKEGYKCTLILTEGDSAKTFAMSGLNVIGRDYYGVFPLRGKLLN 476 Query: 447 TWEVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCA 504 + S ++ ++E+ I +G++ DDL LRYG I ILAD D DG HI L+ Sbjct: 477 VRDASPKKIADNEEITAIKKIVGLEQGKVYDDLKGLRYGSIMILADQDVDGYHIKGLIMN 536 Query: 505 LFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGK---PNV 560 + +LVK G + PL + GK + E+ K++ ++ Sbjct: 537 FIHCFWPSLVKYEGFIQSFATPLLKATKGKGKTKQVVAFTSPQSFEEWKKENNDGKGWSI 596 Query: 561 QRFKGLGEMNPMQLRETTLDPNTR------------------------------------ 584 + +KGLG +P + +E D N + Sbjct: 597 KYYKGLGTSDPAEAQECFADLNDKLVKYFWEPKKKNLESESNSKSVDSNKSKTTNKKKIE 656 Query: 585 --------RLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++ T ++ ++ M + A R +DR+ W+ ++ Sbjct: 657 SEFIEEESDIISDTYKPKNKDISEDAMTLAFAGGREDDRKIWINTYNPDNYLD 709 >UniRef50_C9DGI8 Gp60plus39 DNA topoisomerase subunit n=1 Tax=Deftia phage phiW-14 RepID=C9DGI8_9CAUD Length = 648 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 136/660 (20%), Positives = 249/660 (37%), Gaps = 72/660 (10%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTRPN--------------------------HLGQ 37 T + ++L+ + +R RPG Y + L Sbjct: 22 TQDVSKYKMLSERDHIRIRPGRYLGDINTSLVKDSWTVNEQGQVERRDVQQNPAFTKLFD 81 Query: 38 EVIDNSVDEALAGHAKRVDVIL----HADQSLEVIDDGRGMPV--DIHPEEGVPA----V 87 E+I NS D +L K +++I + V D+G G+PV I EG P Sbjct: 82 EIITNSADFSLTADGKHLNIIRVDYSREHGCISVYDNG-GIPVVETIVDREGQPTKLWIP 140 Query: 88 ELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKV 147 ++I L +G F+++ S G +G G ++VN S R +V ++I + +G Sbjct: 141 DMIFGFLRSGSNFNDEADSESAGQNGEGSTLVNVFSSRFDVETCDGKNKFSITYLDGMAN 200 Query: 148 QDLQVVGTCGKRNTGTSVHFWPDETFFDSP---RFSVSRLTHVLKAKAVLCPGVEITFKD 204 + V T + ++P+ + + L A + + + Sbjct: 201 KTAPEVVAAQGATPFTRITYFPEWSIMGMTGQEDWIEDTLRRRCLEVAACNTHIRVYYNG 260 Query: 205 EINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLT 264 + N ++ D+ A A W + Sbjct: 261 KPVNVKK-------FGDFAAML-------------DPVCVSESAPKWDVALSLSKNGFKH 300 Query: 265 ESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKM 324 SYVN T GGTH+N + ++ +R E + +I ++ ++ ++ Sbjct: 301 YSYVNSTLTFVGGTHINHVMDKIVAEVRAHIES----KTKQDIKPAEILNQFQLTVAARI 356 Query: 325 QDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAK 384 +P+++ QTKE L + + V FI + + +LL A + ++ A+ Sbjct: 357 NNPRYSSQTKENLITPVSSYNVKYSPSKEFIKAIIDSPMMKKLLEWAERRKAVQDIKEAE 416 Query: 385 KVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKI 444 K ++ + K T ++ LF+ EGDSA QA + + + PL+GK Sbjct: 417 KEIQDARKASFHHIPKYRPATNKNKAENILFVAEGDSALKP-LQAAKKPHHGLFPLRGKP 475 Query: 445 LNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCA 504 N ++ + + +E D+ +G+D + +RY + + DAD DG HI LL Sbjct: 476 DNVFDKTIRHLAKQKEFQDLIQILGLDLHQFNSDTIRYSALVVATDADLDGAHIRGLLTV 535 Query: 505 LFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFK 564 F + +R L+ G + + P+ + GKE TE+E E + K + +K Sbjct: 536 AFWRFWRPLIDEGFLRFLVTPIITVKQGKETIEFFTEQEYEDW--RAANPTAKYTRKYYK 593 Query: 565 GLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD 624 GLG + DP VQ D++ D + + +++ R++WL D Sbjct: 594 GLGSWATEDMERFMNDPKYMVKVQPLTDEDVDN-----LVLAFDPSKADARKSWLGLSAD 648 >UniRef50_C8XUB6 Topoisomerase II large subunit n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUB6_9CAUD Length = 637 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 144/656 (21%), Positives = 244/656 (37%), Gaps = 69/656 (10%) Query: 1 MTQTYN-ADAIEVLTGLEPVRRRPGMYTDTTRPN-------------------------- 33 M+ + + LT +E + RP + + R + Sbjct: 1 MSDKIDIERKYKKLTHVEHILLRPERHLGSIRSSVGTVWVYDPTKDQVIFRDNFEYSPAL 60 Query: 34 -HLGQEVIDNSVDEALAGHAK---RVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVEL 89 E+I N VD + K + V + ++ D G+PV H E+ Sbjct: 61 IKQFDEIITNCVDHSKTPEGKSLTEITVTVSPMNGQIIVADNGGIPVVKHGVTNEWLPEM 120 Query: 90 ILCRLHAGGKFSNK----NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGE 145 + L+AG F+++ N Q SGG +G G S+VN SK V + Y FE+ Sbjct: 121 LFGSLYAGSNFNDEDEEYNNQKSGGQNGEGASLVNVFSKWFRVATSDGKKSYAQLFEDNM 180 Query: 146 KVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 + V+ K GT++ + PD + L + + A K Sbjct: 181 SKKSNPVISNTPKE-FGTTIAWIPDYARLGVKGLDQNNLLMIYRR-AFEVAACNPRLKVV 238 Query: 206 INNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTE 265 +N + R DY + E+ +W++ P G + Sbjct: 239 LNGKQIRIDRFGHFVDY----------------FHAGSAVDESGEWSVAVAPSSGTFMHA 282 Query: 266 SYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQ 325 SYVN I T GG HV+ + ++ A+R +L I + + ++ + Sbjct: 283 SYVNSIATHIGGPHVDYVADQIVAAIRPQLVK----KFKTELKPAVIKNHMSLFIAADIN 338 Query: 326 DPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQA--AELLAEMAISSAQRRMRAA 383 +P+F QTKER+++ S D I + V A ++ LA + A Sbjct: 339 NPRFDSQTKERMTTPVSQFGTSYKPSDKLIRKALEFVMAGLSKELASLRNEQDDAEFEKA 398 Query: 384 KKVVRKKLTSGPALPGKLADCTAQ-DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKG 442 KK + K+ K TA+ D + L L EGDSA ARD + + PL+G Sbjct: 399 KKDISKRDYREI---EKYYPATARGDRSGCSLLLTEGDSASNPILNARDTKKIGLFPLRG 455 Query: 443 KILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLL 502 K +N +V+ ++E ++ G L RY + + DAD DG+HI LL Sbjct: 456 KFINCLNAPRTKVMNNEEFKNLCTIHGGAVPGQPLDISRYPQTVVATDADDDGIHIRGLL 515 Query: 503 CALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQR 562 L+ ++ V+ G + + P R+ GK ++ + E E L + K + Sbjct: 516 ITLYCTYWPEYVRQGRLKLLRTPYMRVWCGKVMHEFMNNAEYEEFL-KTPDAKKITKKKY 574 Query: 563 FKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 KGLG + + + + +T+DD Q + ++ R+ W Sbjct: 575 LKGLGGNSTEDFKRILNNLDAYT-TTVTLDDGYQQSLKNG----FGDEAADYRKTW 625 >UniRef50_UPI0001976865 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Bacillus subtilis subsp. subtilis str. NCIB 3610 RepID=UPI0001976865 Length = 638 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 159/642 (24%), Positives = 285/642 (44%), Gaps = 33/642 (5%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPN-HLGQEVIDNSVDEALAGHAKRVD-VI 58 MT T N D I+ L E R + ++ + H +E++ N DE + + + + Sbjct: 1 MTTT-NQDKIKRLDDREKSREKIAIWYGSADNYYHGLKEILANGTDEVINNFDEGIVTLE 59 Query: 59 LHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 L D Q++ V D GRG+P+D +GV EL+ L A K+ Q + G +GVG + Sbjct: 60 LFDDLQTVRVTDTGRGIPID-GETDGVKNYELLFRTLFASTKYETSE-QTTTGTNGVGAT 117 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 V+N S + DG + + FENG ++ + GT + F D + Sbjct: 118 VLNFTSLFFHIESYYDGYKHALKFENGGELVQDLTKEKISEDRHGTVITFKLDPEVYPVV 177 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 + + +++ A+ +++ F N E+ + Y+ + +Y E + T P Sbjct: 178 TYDKDVVREIVRRFAIGSHKIKLIFI--HNGEEETFHYES-VEEYFEELIGSTTTSPVIT 234 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 + + L + + ESY+NL GG+ +G+ G+ ++ Sbjct: 235 APESLYEEDGERTQIKLTFSTTTDPIQESYLNLTYLSDGGSFNDGVITGIKTFCNKYARE 294 Query: 298 RNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 + P+G+ + EDI ++VL +F QTK + + Sbjct: 295 NKLFPKGINSFTTEDIESSVSFVLVALSNKVEFKNQTKLSTDKKLYRKLAQRHTTQLLEV 354 Query: 357 WLNQNVQAAELLAE------MAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLN 410 + +N + + + +Q+ + KK + +K+ L DC + Sbjct: 355 FQIENEKGFKKFVNHLLEVQKHNTQSQKAKQQLKKKLSEKVDGIGNKVANLVDC-KKHGK 413 Query: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 +E+F+ EG SA GS ARD YQA PL+GKILN + + +Q + D+ +G Sbjct: 414 DSEIFIAEGQSALGSIVLARDAVYQAAYPLRGKILNCLKADYTTIFKNQIITDLIKVLGC 473 Query: 471 DP---------DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYV 521 D+ +++ LRYGKI I D DSDG IA L+ + + L++ G+VY+ Sbjct: 474 GIQTDKKNKDLDTFNINNLRYGKIIIATDQDSDGAQIACLIITMIYRLMPKLIEEGYVYI 533 Query: 522 ALPPLYRID-LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLD 580 A PLY I + Y +E EK+ +++ KGK + R KGLGE++ + + ET ++ Sbjct: 534 AQTPLYEIKLEDDSMIYFYSESEKD---QKINTLKGKYTIARCKGLGELDAVTMAETAMN 590 Query: 581 PNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 TR L+++T++D ++ ++ + ++RR ++ E Sbjct: 591 EETRNLIKVTVEDAENMI--ESLETWMGSS-VDNRREYISEN 629 >UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RIW2_TETNG Length = 1568 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 104/572 (18%), Positives = 190/572 (33%), Gaps = 102/572 (17%) Query: 10 IEVLTGLEPVRRRPGMYTDTT--------------------------------------- 30 + T LE + RP Y + Sbjct: 18 YQKKTQLEHILLRPDTYIGSVEPVTQVGPGSTAPRPKTTPFLEYSCPIWFFFQQMWVFDE 77 Query: 31 -------------RPNHLGQEVIDNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMP 75 + E++ N+ D + + + + ++ + ++G+G+P Sbjct: 78 EVGMNQREVTYVPGLYKIFDEILVNAADNKQRDKNMTAIKITIDPESNTISIWNNGKGIP 137 Query: 76 VDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRD 133 V H +E + LI L + + + +GG +G G + N S + V + Sbjct: 138 VVEHKDEKMYVPALIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEY 197 Query: 134 GQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSR---LTHVLKA 190 + ++N V + T V F PD + F + LT Sbjct: 198 RHSFKQTWQNNMTKTSEPKVKLFDG-DDFTCVTFQPDLSKFKMEKLDKDTMALLTRRAYD 256 Query: 191 KAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVD 250 A C GV++T + +G Y+ V L E +T Sbjct: 257 VAGSCRGVKVTLNGKKLPV-------NGFRSYVDLYVKDK--LDETGVALKVVNETVNER 307 Query: 251 WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAE 310 W + S+VN I T +GG H++ + ++ + E + +N GV + Sbjct: 308 WEVCLTLSEKGFQQISFVNSIATTKGGRHIDYVVDQIVAKLIEVVKKKN--KAGVTVKPF 365 Query: 311 DIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLN----------- 359 + + ++ +++P F QTKE ++ + + + D FI + Sbjct: 366 QVKNHIWVFVNALIENPSFDSQTKENMTLQTKSFGSKCPLSDKFIRAVRTPPGRPSSCTR 425 Query: 360 ------------QNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQ 407 N E + AQ ++ V+ G D + Sbjct: 426 AVKSRCLCHLQATNCGIVESILNWVKFKAQTQLNKKCSSVKHSKIKGIPKLDDANDAGGK 485 Query: 408 DLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 + L L EGDSA A R+ + PL+GKILN E + +++ + E+++I Sbjct: 486 HSSECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREATHKQIMENAEINNI 545 Query: 465 SVAIGIDPDS-----DDLSQLRYGKICILADA 491 +G+ + L LRYGKI I+ D Sbjct: 546 IKIVGLQYKKSYDDAESLRSLRYGKIMIMTDQ 577 >UniRef50_A3Q8K7 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Mycobacterium RepID=A3Q8K7_MYCSJ Length = 677 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 184/674 (27%), Positives = 278/674 (41%), Gaps = 55/674 (8%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDE-ALAGHA-KRVDVILHA 61 +Y A I L ++ R RP + N +E+IDN+++E A H V + LH Sbjct: 2 SYTAADITELDDVQHTRLRPAVNLGLDVLNTALRELIDNAIEEVADPSHGGSAVTITLHD 61 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFS--GGLHGVGISVV 119 D S+ V DDGRG+PVD P G + L AGGKFS S GL+G+G + Sbjct: 62 DGSVGVADDGRGLPVDSDPVNGKNGIVKTLGTARAGGKFSAHTDAASTGAGLNGIGAAAA 121 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEK------------------VQDLQVVGTCGKRNT 161 +S R +V VRR G+ Y +F G Q L+ G Sbjct: 122 VFISARTDVTVRRAGKTYLQSFGRGYPGVFEGKDFDPDAPFTRADTQKLRGTGNRKPDVH 181 Query: 162 GTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE-------INNTEQRWC 214 GT+V D + + + A A + PGV ++ DE + + Sbjct: 182 GTTVRILFDPAVVPDSQIDIGEVLLRAHAAARMSPGVHLSVIDEGWPGDEVAPALLEPFT 241 Query: 215 YQDGLNDYLAEA-VNGLPTLPEKPFIGNFAGDTEAVD--WALLWLPEGGEL---LTESYV 268 G + L P + G+ W G ++ Sbjct: 242 GPWGTDTLLDLMCTAAGTPAPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPATVAAFC 301 Query: 269 NLIPTMQGGTHVNGLRQGLLDAMREFC---EYRNILPRGVKLSAEDIWDRCAYVLSVKMQ 325 N + T GG+H+ +GL +A+ + + A+D A + + Sbjct: 302 NTVRTPGGGSHLTAAMKGLSEALADRASRMRDLGLAKGEEGPEAQDFAAVTALAVDTRAP 361 Query: 326 DPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ--NVQAAELLAEMAISSAQRRMRAA 383 D + Q K +SSR ++ V + +W N A L ++A+ SA+ R A Sbjct: 362 DVAWDSQAKTAVSSRSLNVAMAPDVARSVTIWAANPANGDAVSLWTKLALESARARRSAE 421 Query: 384 KKVVRKKLTSGPA-------LPGKLADCTAQDL-NRTELFLVEGDSAGGSAKQARDREYQ 435 R + S LP KL + ELFL EGDSA G+ K ARD +Q Sbjct: 422 GAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDSALGTIKAARDATFQ 481 Query: 436 AIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP-DSDDLSQLRYGKICILADADSD 494 A PLKGK N + + ++ A E I +G D+ D RY +I +DAD D Sbjct: 482 AAFPLKGKPPNVYGFALNKARAKDEFDSIERILGCGVRDNCDPELCRYDRILFASDADPD 541 Query: 495 GLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK-R 553 G +I + L ++F+ +R LV+ G VYV LPPL+ + G + Y E E++ + ++K Sbjct: 542 GGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKDGTQRIYCQDESERDAAVAKMKAT 601 Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 K K VQR KGLGEM+ T LDP R ++++ DD + + + L E Sbjct: 602 SKRKVEVQRNKGLGEMDADDFWNTVLDPQRRTVIRVHPDDSE----NKLHHTLFGG-PPE 656 Query: 614 DRRNWLQEKGDMAE 627 RR W+ + + Sbjct: 657 GRRTWMADVASRVD 670 >UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q8HFR9_9EUGL Length = 1247 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 133/672 (19%), Positives = 251/672 (37%), Gaps = 75/672 (11%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPN--------------------------HLGQEVI 40 A + L+ ++ V RP MY + + E++ Sbjct: 2 AHKYKKLSPIDHVLLRPEMYVGSVESQPIQLFLLDDQHSKVEWTTADLNHGLLKIFDEIV 61 Query: 41 DNSVDEA---LAGHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHA 96 N+ D ++V + + V +DG G+P+ + + E+I L Sbjct: 62 LNAADNIHNSKRNPMTFINVTIDETTGQITVENDGAGIPLVKSKDHKLLIPEMIFGHLLT 121 Query: 97 GGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC 156 + N S G HG G + N +S+ V R + I + + + D V Sbjct: 122 SSNYDNDPDSMSAGRHGYGAKLTNIMSQEFIVYCRTADKEVTIRWTDHMRSIDDYQVQPT 181 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVS---RLTHVLKAKAVLCPGVEITFKDEINNTEQRW 213 + T + F PD + F + + L + A P V ++F + Sbjct: 182 NEAGNLTKITFTPDFSVFGVTKLTKDMYRILHKRILDLAAAFPSVTVSFNGTALDVGSFA 241 Query: 214 CYQDGLNDYLAEAVNGLPTLPEKPFIGN-------------FAGDTEAVDWALLWLPEGG 260 Y L EA L + P P + + F + + + A + P+ Sbjct: 242 SYVK-----LFEAPASLFSAPTAPVVADGDAAPPPAELNKPFLFEVKHLRLAFIPQPQAS 296 Query: 261 -ELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYV 319 T + VN + T GGTHV +Q L DA+ + G+ ++ V Sbjct: 297 VSRRTFAVVNGVVTYSGGTHVQAAQQILTDAVDALVAQKK--KEGIIVTVNTFLRYFTTV 354 Query: 320 LSVKMQDPQFAGQTKERLSSR-QCAAFVSGVVKDAF--ILWLNQNVQAAELLAEMAISSA 376 + ++ P+F Q+K RL S+ + F +G + + + +L+ + + +++ Sbjct: 355 VFLETTQPKFDSQSKVRLVSKVKFPRFPTGQLVEHLATMTFLSDASKGQMDVLNKELNA- 413 Query: 377 QRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---RE 433 + R +++ L + + L + EGDSA A + R+ Sbjct: 414 ---LIQVSGKRRPMISTLTKLVDAASAGGS-GSEIRTLIVTEGDSAKALALNSLSNEQRK 469 Query: 434 YQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADA 491 Y + PL+GK+LN + + +E+ D+ A+GI+ LRY ++ ++ D Sbjct: 470 YFGVFPLRGKLLNVRNNNLARLKKCKELCDLFAALGIEIGRRYTSTESLRYQRLLVMTDQ 529 Query: 492 DSDGLHIATLLCALFVKHFRALVKH--GHVYVALPPLYRI-DLGKEVYYALTEEEKEGVL 548 D+DG HI LL + F + +L++H G + + PL R G +V+ +E Sbjct: 530 DADGTHIKGLLISAFESLWPSLLQHSLGFISIFSTPLIRATTRGGDVHSFYNVQEFVAWK 589 Query: 549 EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA 608 R + ++ +KGLG + +E + L+ L + D ++D + Sbjct: 590 HDNARLASECFIKYYKGLGTSTTTEGKEYF-KQMEQHLMPLQVTPSD----SQVLDNVFD 644 Query: 609 KKRSEDRRNWLQ 620 + R+ WL Sbjct: 645 SDEVQWRKEWLS 656 >UniRef50_A5K8Q8 DNA gyrase subunit b, putative n=1 Tax=Plasmodium vivax RepID=A5K8Q8_PLAVI Length = 936 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 153/592 (25%), Positives = 245/592 (41%), Gaps = 113/592 (19%) Query: 92 CRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQ 151 A K ++ Y+FS GLHGVG+SV NALS ++V V R G++++I E G+ V L Sbjct: 215 TPKEAPQKSPSQMYRFSSGLHGVGLSVANALSSFMKVKVFRRGKIHSIELEKGKVVTPLS 274 Query: 152 VVGTCGKRNTGTSVHFWPDETFFDSP-RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE 210 V C GT +H+ PD T F + R + + + + A L + F DE + Sbjct: 275 -VRDCPVSKRGTQIHYRPDPTIFKNTIRHNAEMIRNRIHQLAYLNDRLSFYFYDERAAKK 333 Query: 211 -----------------------------------QRWCYQDGLNDYLAEAVNGLPTLPE 235 + ++ GL++Y+ +L + Sbjct: 334 AAAEAENAANAADLADVADHAGNTAEHNNLDFYPYEVIKHEGGLDEYMESLTKNKASLFK 393 Query: 236 ---KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 K +D L W S+VN + T GGTHV+ ++ + + Sbjct: 394 DSNKVISITCHHKNVHIDLRLKWTQGEYHEHIISFVNNVNTTDGGTHVDAMKYAISRCVN 453 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 + V + E I + +LS+KM +P+F GQTK +L S + + + Sbjct: 454 FNIKKNEATRNFVNIPGEYIREGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFE 513 Query: 353 AFILW--LNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSG--PALPGKLADCTAQD 408 N+ L + ++ +AA+ ++R K LPGKL DC + D Sbjct: 514 KLSEIFDFEPNLLNTIYLKALQAKASDEEAKAARDLIRSKNNQCYATILPGKLVDCISDD 573 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDE-VLASQEVHDISVA 467 +NR E+F+VEGDSA GSAKQAR+RE QAI+PLKGKILN ++ +++ + + E+ + A Sbjct: 574 INRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITA 633 Query: 468 IGIDPDSDDLSQ----------------------------------------------LR 481 IG+ ++ LR Sbjct: 634 IGLSVSCENSKIAKGKSTINSKKKDLKKKYDLRSGKKENAQVNNALVSKKKNPLFDTPLR 693 Query: 482 YGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG--------- 532 YGKI I+ DAD DG HI LL + + ++++G+V+VA PPLY++ Sbjct: 694 YGKIIIMTDADVDGEHIRILLLTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDATIKE 753 Query: 533 -------------KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNP 571 K + + +++E +L L + + R LG P Sbjct: 754 TVMKQFNVSTKNSKTLIHTYSDDELNVLLGLLDKDRSSHAEHRSAQLGRGKP 805 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 3/105 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y+A I +L GLE VR+RPGMY T + + E+IDNSVDE + +++ Sbjct: 51 NDYDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNEIKIVI 110 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN 104 H D+S+ + D+GRG+P D+H + A+E +L LH+G KF + Sbjct: 111 HQDESVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFVDDE 155 Score = 65.7 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 540 TEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRT 599 TE + +QRFKGLGEM QL TT+DP R+L+++T+ D R Sbjct: 852 TENADPAANSAFFTFSKRYEIQRFKGLGEMMADQLWSTTMDPRVRKLIRVTVS--DAMRA 909 Query: 600 DAMMDMLLAKKRSEDRRNWLQEKG 623 + ++ L+ + S+ R++++ E Sbjct: 910 NNLIFSLMGED-SKLRKSFILENS 932 >UniRef50_Q8GD47 DNA gyrase subunit B (Fragment) n=21 Tax=Bacteria RepID=Q8GD47_9MOLU Length = 393 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 141/396 (35%), Positives = 220/396 (55%), Gaps = 14/396 (3%) Query: 105 YQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENG-EKVQDLQVVGTCGKRNTGT 163 Y+ SGGLHGVG SVVNALS V+V + R+G+ +++ F +G +L ++G K TGT Sbjct: 1 YKVSGGLHGVGASVVNALSLYVDVVIEREGKKFHMLFSDGGTAQTELAIIGESNK--TGT 58 Query: 164 SVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDY 222 +V F PD F ++ F + + + +K A L G++I+ DE N + + +G+ DY Sbjct: 59 TVRFKPDPEIFKETVTFDYTTIRNKVKQLAYLNKGLKISLNDERINKSVDFHFPNGIVDY 118 Query: 223 LAEAVNGLPTLPEKPFIGNFAGDTEA----VDWALLWLPEGGELLTESYVNLIPTMQGGT 278 + E + F + + V+ AL + E E L ++VN I T +GG Sbjct: 119 IREENETKAKINPTIFYVDGKEAGDEGDIEVEIALQYNSEYNENLI-TFVNNINTHEGGA 177 Query: 279 HVNGLRQGLLDAMREFCEY-RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 H +GLRQ L+ + + E + K S +DI + +LS++ DPQF GQTK +L Sbjct: 178 HEDGLRQALVRIINRYAEKVAQQNKQPQKFSWDDIKEGMICILSIRHTDPQFEGQTKTKL 237 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM---RAAKKVVRKKLTSG 394 ++ V ++ +F +L +N A+ + + +++ + R+ RA ++ RK Sbjct: 238 ANPDAKRVVDAILGKSFEEFLFENPNDAKAILDKNVNAQKARIAAQRAREETRRKGALDT 297 Query: 395 PALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDE 454 +LPGKLADC + D + +EL+LVEGDSAGGSAK R+R +QAI+PL+GK+LN V Sbjct: 298 FSLPGKLADCESNDSSISELYLVEGDSAGGSAKTGRNRHFQAILPLRGKVLNVERVQEVR 357 Query: 455 VLASQEVHDISVAIGIDPDSD-DLSQLRYGKICILA 489 A+ E+ I A+G D DLS++RYGKI I+ Sbjct: 358 AFANTEIKSIVTAVGTGIKEDIDLSKIRYGKIVIMT 393 >UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis RepID=C6LX36_GIALA Length = 1492 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 130/734 (17%), Positives = 245/734 (33%), Gaps = 118/734 (16%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTT-------------------------RPNHLGQEVIDN 42 I+ +TG E V RP MY + + E+I N Sbjct: 5 TKIQRVTGSEHVLLRPDMYVGSVSSAETFLWLYNPDQGLYYTKANIVPGLCKIFDEIIVN 64 Query: 43 SVDEALAG-------HAKRVDVILHA-DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRL 94 + D + + ++ V +DG + +E + L L Sbjct: 65 ASDNKQRDSDRSAGHKMSYIKCDVDVVSGAISVENDGVEGLLHFDEKEKMYLPTLAFGIL 124 Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFE-NGEKVQDLQVV 153 + + + +GG +G G + N S + V ++ +G+V+ + N + Q ++ Sbjct: 125 MTSSNYDDTEQRVTGGRNGYGAKLTNIFSTKFTVLLQENGRVFEQTWTDNMKNTQSPRIE 184 Query: 154 GTCGKRNTGTSVHFWPDETFFDSPR-FSVSRLTHVLKA---KAVLCPGVEITFKDEIN-- 207 K+ F PD F ++++ A G+++ E Sbjct: 185 DVKDKKKNFIRFSFTPDYMKFGMTSGLDRDHAAYMMRRAVDVAGCNIGLKLIINGEELKI 244 Query: 208 --------------NTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWAL 253 N E Y+ D N + P+ A Sbjct: 245 ANFEQYARMVYRSINPEITQFYEASRGDAAQVGANDSDSEPDLKSAATKAKPKAKRTKKA 304 Query: 254 L-----------------WLPEG-------------------GELLTESYVNLIPTMQGG 277 + W + GEL+ S+VN I T GG Sbjct: 305 VETNSLLVPIDELSKPSDWTSDYLKVISVNKFWDIGLGYTDSGELVQVSFVNSINTTDGG 364 Query: 278 THVNGLRQGLLDAMREFCEY--RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 THV+ + ++ + + + KL+ + + + + +P F QTK Sbjct: 365 THVDAILDLIMSQLNDILIKSFQQDAKNAKKLTRQQLKSCLVLFIRSLVVNPSFDSQTKI 424 Query: 336 RLSSRQC----AAFVSGVVKDAFILWLNQNVQAAE----LLAEMAISSAQRRMRAAKKVV 387 L + + + + L + +Q L + + + A + + Sbjct: 425 SLKTDKAALLRSLGSTQAELTNLATQLVKRIQDVRPLWNALRQASYNQAAKLLTKTDGSK 484 Query: 388 RKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR-----DREYQAIMPLKG 442 +L P L +A ++ ++ L L EGDSA A ++Y + PL+G Sbjct: 485 TSQLLGIPKLDDAIA-AGTRESSKCTLILTEGDSAKALAVDGISSIEDGKKYYGVFPLRG 543 Query: 443 KILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDL-----SQLRYGKICILADADSDGLH 497 K++N S D+V + E+ ++ +G+ D + LRYG + I+ D D DG H Sbjct: 544 KVINVRNESIDKVSNNAEITNLKKILGLKQGMDYSTQEARNTLRYGHVMIMTDQDPDGSH 603 Query: 498 IATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKG 556 I LL LF ++ L + + + + P+ R + + T E + Q Sbjct: 604 IKGLLINLFDTYWNGLARSNKFLDFFITPIVRCTQARNMKTFYTIPEYKKWT-QTVTDLP 662 Query: 557 KPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRR 616 K N+ +KGLG N ++ L + E + + KK ++DR+ Sbjct: 663 KWNINYYKGLGSSNTTDAKQYFQQIAN-NRKTLIYNPESASKLK----LAFDKKLADDRK 717 Query: 617 NWLQEKGDMAEIEV 630 W+ +++ Sbjct: 718 TWISGTDPDTYLDL 731 >UniRef50_D2RAT5 DNA gyrase, B subunit, C-terminal domain protein n=10 Tax=Bifidobacteriaceae RepID=D2RAT5_GARVA Length = 792 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 146/453 (32%), Positives = 234/453 (51%), Gaps = 43/453 (9%) Query: 212 RWCYQDGLNDYLAEA-----------VNGLPTLPEKPFIGNFAGD--------TEAVDWA 252 + + G+ D++ ++G T E+ + AGD VD A Sbjct: 336 EFLHNGGVKDFVDFLSKGEAVSDIWRISGEDTYVEETQAVDSAGDLHAQQVTRKCGVDIA 395 Query: 253 LLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR------NILPRGVK 306 + W+ G + S+VN++ T GG HV+G QGL +R+ E N+ K Sbjct: 396 MRWV-NGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQIRKAVEDNARKLKVNLKDSNTK 454 Query: 307 LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNV---- 362 + +DI V++V++ +PQF GQTK+ L + Q V+ + F + + Sbjct: 455 IERDDITAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTKMTDAQFGEMITGSKRGFK 514 Query: 363 QAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEG 419 + + + E +S R++A K RK ++P KL+DC + + ELF+VEG Sbjct: 515 EQSSRVLEKIVSEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIVEG 574 Query: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDLS 478 DSA G+AK AR+ +QA++P++GKILN + S ++L+++E I +G S D+S Sbjct: 575 DSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSGASFDIS 634 Query: 479 QLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI----DLGKE 534 Q RY KI ++ DAD DG HI LL LF ++ R L++HGHVY A+PPL+RI E Sbjct: 635 QARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALAGKRKGE 694 Query: 535 VYYALTEEEKEGVLEQL--KRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTID 592 Y +++E G L+ L K ++QR+KGLGEM+ QL +TT+DP TR L ++ + Sbjct: 695 YIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRM- 753 Query: 593 DEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 ED Q+ + D+L+ R+ ++ + D Sbjct: 754 -EDAQQASEVFDLLMGDD-VPPRKQFIVDNADD 784 Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats. Identities = 97/232 (41%), Positives = 136/232 (58%), Gaps = 28/232 (12%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y+AD++ VL GL+ VR+RPGMY TT H E+IDN+VDEALAG + V Sbjct: 5 KEQYDADSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGACDHIIVT 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 LH D S+EV D+GRG+PVD+ P+ + VE++L +LHAG KF N +Y +GGLHGVG SV Sbjct: 65 LHDDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGSSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK------------------------VQDLQVVG 154 VNALS R++V V RDG+ +++AF G +L+++G Sbjct: 125 VNALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADPEHPSPASPFKRTRKNKSTELEIIG 184 Query: 155 TCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 T + TGT V +W D F + FS +L ++ + L PG++IT DE Sbjct: 185 TVSPKTTGTRVRYWADPEIFNSTAHFSYEQLIARVRQTSFLVPGLKITVIDE 236 >UniRef50_D2QB32 GyrB2 DNA gyrase subunit B n=8 Tax=Bifidobacterium RepID=D2QB32_9BIFI Length = 778 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 144/454 (31%), Positives = 235/454 (51%), Gaps = 43/454 (9%) Query: 211 QRWCYQDGLNDYLAEA-----------VNGLPTLPEKPFIGNFAGD--------TEAVDW 251 + +C+ G+ D++ + G T E+ G+ AVD Sbjct: 321 EEFCHNGGVKDFVDFLSKGEAVSDIWRITGDDTYVEETQAVGEGGELHAQKVTRDCAVDI 380 Query: 252 ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR------NILPRGV 305 A+ W +G + S+VN++ T GG HV+G QG+ +R+ E N+ + Sbjct: 381 AMRWT-DGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARKLKVNLKDSNM 439 Query: 306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNV--- 362 K+ +DI V++V++ +PQF GQTK+ L + Q V+ + F + + Sbjct: 440 KVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFGEMITGSKRGY 499 Query: 363 -QAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVE 418 + + + E + R++A K RK ++P KL+DC + + ELF+VE Sbjct: 500 KEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIVE 559 Query: 419 GDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDL 477 GDSA G+AK AR+ +QA++P++GKILN + S ++L+++E I +G S D+ Sbjct: 560 GDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSGASFDI 619 Query: 478 SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI----DLGK 533 Q RY KI ++ DAD DG HI LL LF ++ R L++HGHVY A+PPL+RI Sbjct: 620 EQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGAHKG 679 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 E Y +++E G L +L+RK N +QR+KGLGEM+ QL +TT+DP TR L ++ + Sbjct: 680 EYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRM 739 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 ED ++ + + +L+ R+ ++ E D Sbjct: 740 --EDAEQANEIFSLLMGDD-VPPRKAFIVENADD 770 Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats. Identities = 96/232 (41%), Positives = 134/232 (57%), Gaps = 28/232 (12%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Y A ++ VL GL+ VR+RPGMY TT H E+IDNSVDEALAG + V Sbjct: 3 KDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGACNHIVVT 62 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 LH+D S+EV D+GRG+PVD+ P+ + VE++L +LHAG KF N +Y SGGLHGVG SV Sbjct: 63 LHSDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSSV 122 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK------------------------VQDLQVVG 154 VNALS R++V V RDG+ ++++F G +L+++G Sbjct: 123 VNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELEIIG 182 Query: 155 TCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 + TGT + +W D F D+ FS +L ++ + L PG++IT DE Sbjct: 183 KVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDE 234 >UniRef50_B6XTR9 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XTR9_9BIFI Length = 783 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 144/454 (31%), Positives = 233/454 (51%), Gaps = 43/454 (9%) Query: 211 QRWCYQDGLNDYLAEA-----------VNGLPTLPEKPFIGNFAGD--------TEAVDW 251 + +C+ G+ D++ V G T E+ G+ AVD Sbjct: 326 EEFCHTGGVRDFVDYLSKGEAVSDIWRVTGEDTYVEETQAVGDGGELHAQKVTRKCAVDI 385 Query: 252 ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR------NILPRGV 305 A+ W G + S+VN++ T GGTHV+G G+ +R+ E N+ + Sbjct: 386 AMRWT-NGYDTTMRSFVNVVETPGGGTHVDGYLLGMTKQIRKAIEDNARKLKVNLKDSNM 444 Query: 306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNV--- 362 K+ +DI V++V++ +PQF GQTK+ L + Q VS + F + + Sbjct: 445 KVERDDILSGLVAVITVRIAEPQFQGQTKDVLGTAQVKPIVSKMTDKQFGEMITGSKRGY 504 Query: 363 -QAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVE 418 + + + E + R++A K RK ++P KL+DC + + ELF+VE Sbjct: 505 KEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIVE 564 Query: 419 GDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDL 477 GDSA G+AK AR+ +QA++P++GKILN + S ++L+++E I +G S D+ Sbjct: 565 GDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAGSGASFDI 624 Query: 478 SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI----DLGK 533 Q RY K+ ++ DAD DG HI LL LF ++ R L++HGHVY A+PPL+RI Sbjct: 625 EQARYNKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGARKG 684 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 E Y +++E G L +L +K+ N +QR+KGLGEM+ QL +TT+DP TR L ++ + Sbjct: 685 EYIYTYSDDELAGKLAELDKKRIGYNEDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRM 744 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 ED ++ + +L+ R+ ++ E D Sbjct: 745 --EDAEQASRIFSLLMGDD-VPPRKAFIVENADD 775 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 97/232 (41%), Positives = 134/232 (57%), Gaps = 28/232 (12%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Y A ++ VL GL+ VR+RPGMY TT H E+IDNSVDEALAG + V Sbjct: 8 KDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGVCNHIIVT 67 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 LH+D S+EV D+GRG+PVDI P+ + VE++L +LHAG KF N +Y SGGLHGVG SV Sbjct: 68 LHSDGSVEVADNGRGIPVDIEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSSV 127 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK------------------------VQDLQVVG 154 VNALS R++V V RDG+ ++++F G +L+++G Sbjct: 128 VNALSSRLDVEVDRDGKTHHMSFHQGHPGVYTDVDSEHPSPDAPFKRTRKNRPTELEIIG 187 Query: 155 TCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 + TGT + +W D F D+ FS +L ++ + L PG++IT DE Sbjct: 188 KVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDE 239 >UniRef50_B6EUG7 DNA gyrase subunit B (Fragment) n=6 Tax=Actinomycetales RepID=B6EUG7_RHOER Length = 446 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 149/450 (33%), Positives = 206/450 (45%), Gaps = 71/450 (15%) Query: 105 YQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTS 164 Y SGGLHGVGISVVNALS RVE +++R G+ + F V ++V R TGT+ Sbjct: 1 YAVSGGLHGVGISVVNALSTRVEADIKRAGKHWIQNF--NMAV-PDELVEGSNARGTGTA 57 Query: 165 VHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI---NNTEQRWCYQDG--- 218 + FWPD F++ F ++ L+ A L G+ IT KDE E + G Sbjct: 58 IRFWPDPEIFETTEFDFDVISRRLQEMAFLNKGLTITLKDERVTEEELELEALAEGGDTA 117 Query: 219 ----LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWA---------------------- 252 + + EA+ G K +G+ A D A Sbjct: 118 ESIDGDSFDDEALEGTEASETKEVTDAESGEDIADDIAPSKPKKLEKKVSYHYPDGLIDY 177 Query: 253 ------------------------------LLWLPEGGELLTESYVNLIPTMQGGTHVNG 282 + W G + ++ N I T +GGTH G Sbjct: 178 VKYLNKSKSEIHPTIVGFEAKGDDHEVEIAMQWNS-GYKESVHTFANTINTHEGGTHEEG 236 Query: 283 LRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQ 341 R L M + +L + L+ +D + A V+S ++ DPQF GQTK +L + + Sbjct: 237 FRAALTTLMNRYAREHKLLKEKDPNLTGDDCREGLAAVVSARVGDPQFEGQTKTKLGNTE 296 Query: 342 CAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALP 398 FV V + W + N A+ + A++S+ R+ A K V RK T LP Sbjct: 297 LKGFVQRAVNEHLAFWFDANPAEAKAIVNKAVASSHARVAARKARDLVRRKSATDMGGLP 356 Query: 399 GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAS 458 GKLADC +D N ELF+VEGDSAGGSAKQ RD YQAI+PL+GKILN + D VL + Sbjct: 357 GKLADCRTKDPNAAELFIVEGDSAGGSAKQGRDSMYQAILPLRGKILNVEKARLDRVLKN 416 Query: 459 QEVHDISVAIGIDPD-SDDLSQLRYGKICI 487 EV I A+G + D+ +LRY KI + Sbjct: 417 AEVQAIITALGTGINEEFDIEKLRYHKIVL 446 >UniRef50_Q2JC55 DNA topoisomerase II n=4 Tax=Actinomycetales RepID=Q2JC55_FRASC Length = 658 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 139/385 (36%), Positives = 203/385 (52%), Gaps = 8/385 (2%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y A +I + +GL VRR P MY +T +HL E+IDN+VDE G ++V+LH Sbjct: 13 EYTARSIVLFSGLTAVRRNPSMYIGSTGTEGLHHLVFELIDNAVDEFAVGTCGLIEVVLH 72 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 AD S V DDGRG+PVD HP+ VPA+++++ LH+GGKF Y+ S GLHGVG+S VN Sbjct: 73 ADGSCSVSDDGRGIPVDEHPDLRVPALQVVMTTLHSGGKFQGDTYRRSAGLHGVGLSCVN 132 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS+ + V V RDG +Y ++ GE + +VGT + GT V F PD FD+ F Sbjct: 133 ALSEWLRVEVHRDGGMYTQSYGRGEPTTTVDMVGTSDR--HGTLVRFRPDMMIFDAAAFV 190 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240 L + A L PG+ + DE +TE+ + Y +G+ +L + + +P I Sbjct: 191 TGVLAARMAELAFLHPGLVLRLVDERTDTEETFDYVEGVKGFLTQRNRDAEVVHPEPIII 250 Query: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300 +D AL W EG S+VN + T QGG HV+ LR GL A+ + + Sbjct: 251 TAERSDLVLDVALQWT-EGYAEEMSSFVNAVRTDQGGAHVDALRTGLASAINDHASMNRM 309 Query: 301 LPR--GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWL 358 L G +++ DI + V+S++M P+F GQTK RL S + FV V + L Sbjct: 310 LDSFAGERITTNDILEGLTAVVSLRMDSPRFDGQTKRRLQSPEVGPFVRRAVAETVAATL 369 Query: 359 NQNVQAAELLAEMAISSAQRRMRAA 383 + + A+ + + R+ A Sbjct: 370 RREPGLGARVVARALDATRARLAAR 394 >UniRef50_A6N697 DNA gyrase subunit B (Fragment) n=2 Tax=uncultured bacterium RepID=A6N697_9BACT Length = 440 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 142/444 (31%), Positives = 215/444 (48%), Gaps = 33/444 (7%) Query: 88 ELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQ-VYNIAFENGEK 146 E+I+ LHAGGKF + Y +SGGLHGVG+SVV AL+ R+E V R+ + + IA+E G+ Sbjct: 1 EVIMTVLHAGGKFDGEVYDYSGGLHGVGVSVVCALASRLEAQVWRETEGSFTIAYEQGKL 60 Query: 147 VQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 206 VQ L+ GT + FWPD F + ++KA L PG+ + D Sbjct: 61 VQPLRKRPGSKAHPHGTRIKFWPDPEIFGDAVVDFDAVLERCRSKAYLIPGLRVDVIDHR 120 Query: 207 NN--TEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEA---------------- 248 + + + ++GL D L N KP I G E Sbjct: 121 LDPPVKHTYTSRNGLVDLLGHLANN---PLHKPIIIEGEGTYEETVQVLGDDGIRAQNME 177 Query: 249 ----VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-R 303 ++ AL+W G E + VN + T +GGTH+ GL Q L + + E + + Sbjct: 178 RTGRLELALVWT-GGYETQFQLAVNQVTTPRGGTHLTGLNQALSRVVVKAAEGSRVKKAK 236 Query: 304 GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQ 363 + +D+ + V+ +++ +PQF GQ KE L + Q V +V W + Sbjct: 237 DPSPNKDDVMEGLCLVMHLQIPEPQFNGQAKEELGTPQAHQLVYQIVARELAKWFETAPR 296 Query: 364 AA-ELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEG 419 ++ E +++A+ R A + +K ALP KL+D +EL +VEG Sbjct: 297 THVRVVLEKVMAAARARDAARRSRDMARKKDRNQVLALPAKLSDSYRHYPEESELLIVEG 356 Query: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD-DLS 478 DSA G AK RD+ +QA++P++GKILN S+ + ++ EV I A+G+ P D Sbjct: 357 DSAAGPAKAGRDQRFQAVLPIRGKILNAARASAHNLASNAEVTAIFSALGLQPGPKCDPE 416 Query: 479 QLRYGKICILADADSDGLHIATLL 502 Q RY ++ I+ DAD DG HI TLL Sbjct: 417 QRRYTRVVIMTDADVDGSHIRTLL 440 >UniRef50_C3IT50 DNA gyrase subunit B n=3 Tax=Bacillus thuringiensis RepID=C3IT50_BACTU Length = 726 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 165/695 (23%), Positives = 286/695 (41%), Gaps = 93/695 (13%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDV 57 ++Q Y ++I+ L G E VRRRP ++ H E++ NSVDE AG ++D+ Sbjct: 4 LSQNYGNNSIDSLEGAERVRRRPAAVLGSSGIEGARHGVTEIVGNSVDEGTAGFGSKLDI 63 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF----------------- 100 D S+ + D GRG+P+ + +G+ L+ ++AGGK+ Sbjct: 64 NYFKDGSISIRDYGRGVPMGYNENKGISNWFLVFNEMYAGGKYKDYQEELRAIKDWSTFN 123 Query: 101 -SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAF------------------ 141 ++ NY FS GL+G+G + S+ E DG + F Sbjct: 124 PTDYNYLFSIGLNGLGAASTQYTSEFFEAISITDGIATKMEFRGGYPILKDANGNEVHAI 183 Query: 142 --------ENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAV 193 E+G +++ + GT +H+ PD F ++ + V ++ A Sbjct: 184 IGEERLLEEHGIVLKEYVAETYETEEENGTYIHWKPDIRVFSDVDITLGWIKDVCESVAY 243 Query: 194 LCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEA----- 248 G+++ DE +T + ++D + P + T Sbjct: 244 -ISGLDVNLYDEATDTMHEYQS-GTISDLNLILNEKNLVNEDSPSVYEDNDITHGNVKQN 301 Query: 249 ---------VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 D +++ E G+ + N I M+GG + + D + Sbjct: 302 NENFIYVFKADVSVVRTREKGKT--VCFHNAIK-MKGGAQYRAVDSAVADFVIGLGN--- 355 Query: 300 ILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLN 359 +GVK+ D + V+ + GQTK+ + + ++ + Sbjct: 356 --TKGVKVVERDFEGKLGVVVKSYSNVASYKGQTKDEVDDNFIYRDLKTIIYRLINTEYH 413 Query: 360 QNVQAAELLAEMAISSAQRRM---------RAAKKVVRKKLTSGPALPGKLADCTAQDLN 410 + + + + A+ R+ R KK R + LP KL + + Sbjct: 414 KGNKDIIEFVDKVLEEAELRITLQEQAKMLREVKKTSRTRKLPEKFLPSKL--FKEKIVK 471 Query: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG- 469 ++EL++VEGDSA S K ARD +QAI ++GK+ N + S +++ S+E+ DI +G Sbjct: 472 KSELWIVEGDSAKTSVKNARDPLFQAIYAVRGKVTNALKASFKKLMESEEIRDIFSLLGT 531 Query: 470 ------IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 +D + D+ R+ KI I DAD DG I LL +F ++K G +Y+ Sbjct: 532 GMDVELLDDNEFDIDACRFEKIIIGTDADEDGYQIRVLLFVVFWVLAPEIIKRGMLYIGE 591 Query: 524 PPLYRIDLGK-EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582 P + I L E+ YA+ E +K ++ + V+R+KGLGE+N L TTL P Sbjct: 592 TPKFGIKLSNGEMVYAINEVDKAEREKEYAGQI--VKVERYKGLGEVNADVLGFTTLAPE 649 Query: 583 TRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRN 617 TR L+Q+ +D D ++ L K + R+ Sbjct: 650 TRNLIQIKLDPADHI-LSEFVETLFGKDPYKKRKE 683 >UniRef50_Q6UGM9 DNA gyrase B subunit (Fragment) n=1 Tax=Fusobacterium necrophorum subsp. necrophorum RepID=Q6UGM9_9FUSO Length = 403 Score = 365 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 139/403 (34%), Positives = 206/403 (51%), Gaps = 10/403 (2%) Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCG-KRN 160 N NY+ SGGLHGVGISVVNALS+ EV V+R+G VY + G+ V+D++++ T Sbjct: 2 NDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGET 61 Query: 161 TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN--NTEQRWCYQDG 218 TGT V F PD F++ F L H LK A L G+EI D N ++ + + G Sbjct: 62 TGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQSEGG 121 Query: 219 LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGT 278 ++D+L E TL K + VD A + E + + N I +G Sbjct: 122 ISDFLKEVTRENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSE-VIYFFCNNIQYYRGRL 180 Query: 279 HVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDR-CAYVLSVKMQDPQFAGQTKER 336 + + + E I +G K++ + + + K + GQTK + Sbjct: 181 SCDWISNLFNKGLLMILEKAGIFEGKGWKITRRRTFGKELGLLFRSKFHNRNLEGQTKTK 240 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTS 393 L + + V+ V+ ++L N +L+ E +SS + R RA + V+RK + Sbjct: 241 LGNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAVLRKSVLE 300 Query: 394 GPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD 453 +LPGKLADC+++ E+FLVEGDSAGGSAKQ RDR +QAI+PLKGKILN + Sbjct: 301 VGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGLH 360 Query: 454 EVLASQEVHDISVAIGIDPDSDDL-SQLRYGKICILADADSDG 495 + L S E+ + A G + + L ++ GKI ++ DAD DG Sbjct: 361 KALESDEIRAMVTAFGTNIGEESLIGKIEIGKIILMTDADVDG 403 >UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 6 RepID=TOP2_IIV6 Length = 1132 Score = 362 bits (930), Expect = 2e-98, Method: Composition-based stats. Identities = 125/699 (17%), Positives = 244/699 (34%), Gaps = 103/699 (14%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNH-------------------------- 34 M + + L+ ++ V RP + +T P Sbjct: 1 MATSNHKKQYTTLSDIDHVLLRPEVIIGSTVPMEQTEYVVDENFSEILEKQVFVSEALIR 60 Query: 35 LGQEVIDNSVDEA-----LAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGV----- 84 + EV+ N+VD + K + + + D + + +DG+ + + +G+ Sbjct: 61 IFVEVLANAVDNIHRSKGSSTPCKSIKIKIEDDGTTMIHNDGQVIKISKEENDGIEINGK 120 Query: 85 ----PAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEV--NVRRDGQVYN 138 EL+ L + + + + + G +G+G+ N LSK +V + + + Sbjct: 121 KCSVYNHELVFGHLRSSSNYDDTVVRQTSGKNGLGVKCTNILSKSFKVIGVDPENKKKFV 180 Query: 139 IAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRL---THVLKAKAVLC 195 + N K V T + T V + PD + FS + + A+L Sbjct: 181 QEWTNNMKETSGPKVTTSSSKTGYTEVIYCPDFERLGN--FSSDIIGIFRKHVLDVAMLA 238 Query: 196 P--GVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWAL 253 GV + F D+ ++ +DY ++ + + + + + Sbjct: 239 SSEGVSVYFNDKKLPIKK-------FSDYTKLFKLEKESI-------SITEEDGSSEVTI 284 Query: 254 LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIW 313 ++ G+ S+VN + T GG HV+G + + + + +KLS +D+ Sbjct: 285 AFVERDGKKKPISFVNGLFTKHGGQHVDGWTKPFFANLLSVLNKPSKTYKDLKLSLKDVT 344 Query: 314 DRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI 373 + + + PQF Q K L S + + W + + E + Sbjct: 345 PYFRFFVKSTVDKPQFDCQNKNMLKSPCLKYTIPDKIITKVCKW-TSVQELKQSSFEKLL 403 Query: 374 SSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQA---- 429 + +++ + L + EG SA A Sbjct: 404 KGKDNNIIKTLNDKKRRPKVSVKEYDPANKAGTTLSEKCTLIVCEGLSAKTYAVAGISTG 463 Query: 430 ---------RDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDL--- 477 + R++ I+PL+GK LN ++D+++ + V D+ A+G+ D Sbjct: 464 ISFTGTDTKKGRDWFGILPLRGKFLNVRNANNDKMIKNTVVTDLVNAMGLTFGMDYSTQK 523 Query: 478 --SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH--------GHVYVALPPLY 527 L YG I I+ D D DG+HI L+ F HF +L + P+ Sbjct: 524 SRKSLNYGSIIIIPDPDEDGIHIEGLVLNFFHHHFSSLFNPVVPNLKDFPFISSMKIPII 583 Query: 528 RI----DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583 ++ G+ T E + K K ++ FKGLG E Sbjct: 584 KVIEKPLKGRREIEFFTHEAFHKFKNENKWHKNH-EIKYFKGLGTTK----HEDVPKIFG 638 Query: 584 RRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 +++V IDD + M+ + +++R+ WL++ Sbjct: 639 KKMVVFNIDDNAHEN----MEKAFKDEEADERKEWLKQY 673 >UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924D0A Length = 1315 Score = 359 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 132/670 (19%), Positives = 248/670 (37%), Gaps = 81/670 (12%) Query: 17 EPVRRRPGMYTDTT--------------------------RPNHLGQEVIDNSVDEALAG 50 + + P Y TT E++ N+ D + Sbjct: 55 QHILSAPDTYIGTTTVDEVRMFIFDEDNNKIIEDVINYVAGFFKTFDEILVNARDHTVRD 114 Query: 51 H-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFS 108 K + + + D + V +DG G+PV IH + + E+I L + K Sbjct: 115 KTCKNIQITIDRDTGRITVWNDGNGIPVSIHKKYNIYVPEMIFGNLLTSQNYGKKGKTVG 174 Query: 109 GGLHGVGISVVNALSKRVEVNV-------RRDGQV----------YNIAFENGEKVQDLQ 151 G G + N SK E++ DG++ Y F+N Sbjct: 175 GKNG-YGAKLCNIYSKEFEIHTIGVDKIKEVDGKIVPDENAKKVEYRQTFKNNMYDVGKP 233 Query: 152 VVGT--CGKRNTGTSVHFWPDETFFDSP-RFSVSRLTHVLKAKAVLCPGVEITFKDEINN 208 + T + + PD + R + + ++K + T +N Sbjct: 234 DINKKISQSSKQFTQISYIPDYEKYGMNGRLTNDMYSLLVKRCYDIAACTPSTVNISVNG 293 Query: 209 TEQR-WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESY 267 + ++D + Y ++ P + + + + + + G+ S+ Sbjct: 294 CNIKCRKFEDYIRLYYSDDPKEKPKI-------TYEKVNDRWEIGIGFNKNVGD-RYISF 345 Query: 268 VNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDP 327 VN I T QGGTHV+ + ++ + F + + + I + ++ ++DP Sbjct: 346 VNGISTFQGGTHVSHVVNNVVAKVTAFIKKKKEHKDLKII-PATIKQYLTFFINCVVEDP 404 Query: 328 QFAGQTKERLSSRQCA----AFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA 383 F QTKE ++S+ + VK + + L+ E+ S + MR Sbjct: 405 GFNSQTKEYMNSKVADWCTCGNMCKDVKCELSDEFIEKLCGNGLMTEVVNMSKFKEMRDL 464 Query: 384 KKVVRKKL--TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIM 438 K KK+ P L L + +T +F EGDSA +E + Sbjct: 465 DKTDGKKVGKLKIPKLKDAL-WAGGKKSAKTSIFFTEGDSAQSFVIDGISVIGQERYGVF 523 Query: 439 PLKGKILNTWEVSSDEVLASQEVHDISVAIGI--DPDSDDLSQLRYGKICILADADSDGL 496 PL+GK+LN ++ ++ ++ E +I +G+ D+S+LRYG + I+ D D DG Sbjct: 524 PLRGKLLNVRNATAKQIKSNTEFLNIKKILGLKQGVKYKDVSKLRYGSVIIITDQDPDGS 583 Query: 497 HIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGK-------EVYYALTEEEKEGVL 548 HI L+ + + L++ G + P+ + + +Y+++E EK + Sbjct: 584 HIKGLIINMLEYFWPELLQIDGFIKAYNTPIVKAWKKTDKKKASVKQFYSMSEFEKWRDV 643 Query: 549 EQLKRKKGK-PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLL 607 E KG + +KGLG + + +E+ D + L + EDD D+ L Sbjct: 644 EMKGDIKGNGWEYKYYKGLGTSSNKESKESFKDFDN-NLTTFLWEHEDDNSVKTDDDVSL 702 Query: 608 AKKRSEDRRN 617 +S +++N Sbjct: 703 DMDKSLNKKN 712 >UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepID=D2XAH7_9VIRU Length = 1089 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 137/628 (21%), Positives = 227/628 (36%), Gaps = 69/628 (10%) Query: 31 RPNHLGQEVIDNSVDEALAG-----HAKRVDVILHAD-QSLEVIDDGRGMPVDIHP---- 80 + E++ N+VD K V V L + V +DG + V+ Sbjct: 51 GLERIFYEIVSNAVDNFFRSSVSGIPMKSVKVSLDRETGYCTVWNDGAHISVEKKEYSYT 110 Query: 81 -------EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR-- 131 + EL A +++ + + G +G+G + + SK V Sbjct: 111 DELGNTSSSLLYPAELFFGYSKASTNYNDDEVRKTSGRNGLGAKLTSIFSKHFVVRCFDP 170 Query: 132 RDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAK 191 +++ F + + V+ C K+ T V F PD F ++ L + Sbjct: 171 EKQRIFQQEFFDNLTRRTPPVIEKCTKKKGWTEVRFLPDFARFGLDGWT-EPLLSRFQKT 229 Query: 192 ---AVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL----PEKPFIGNFAG 244 A L G+ +F E+++ +Q L +Y+A P Sbjct: 230 LRDASLVTGLSASFN------EEKFSFQT-LPEYVALFSGSNPNFLCLSSPDSRFALLEK 282 Query: 245 DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRG 304 + E V E + + S+VN + + G HVN + +L + + + Sbjct: 283 NPELV------PTEPSQETSLSFVNGLE-VFTGVHVNAWKNAVLMPLLKAFNAKQKAEGK 335 Query: 305 VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQA 364 K S + + + + P+F QTK L+S + V + Q Sbjct: 336 PKASMKQLECFFHLFVVCDLDKPEFTSQTKHELASPTPKT--TKVSPE----------QI 383 Query: 365 AELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGG 424 +L+ + R+ K KKL L L EGDSA Sbjct: 384 KKLMKWGFVQELSSRLDPKKTKKTKKLVLDLTKVDDAQLAGTSRSAECILILTEGDSAKT 443 Query: 425 SAKQA----RDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQ- 479 A +DRE LKGK+LNT + + ++E+ + +G+ S DL + Sbjct: 444 LAVSGFTSLKDRERYGAFALKGKVLNTTNATQKTIGKNKELELLKNVLGL---SKDLGKT 500 Query: 480 LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYAL 539 LRYGK+ ++ DAD DG HI L+ KH+ L++ G V P+ + LGK + Sbjct: 501 LRYGKVLLMCDADEDGKHIEGLVLNFLHKHYPELLEKGFVQSLRTPILKAFLGKREEWFF 560 Query: 540 TEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRT 599 + + E L + K VQ FKGLG P R+ + V D Sbjct: 561 STTKFEEWLSKNPGHKN-LKVQYFKGLGSSRPEDGRKYLSEQKLVSYV-------ADGTE 612 Query: 600 DAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 A D+ +K +S +R+ WL E Sbjct: 613 GAWFDLAFSKNKSNERKTWLAGSLTPDE 640 >UniRef50_Q56C43 Gp60plus39 DNA topoisomerase subunit n=3 Tax=T4-like viruses RepID=Q56C43_9CAUD Length = 630 Score = 352 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 139/637 (21%), Positives = 247/637 (38%), Gaps = 77/637 (12%) Query: 13 LTGLEPVRRRPGMYTDTT--------------------RPNHLGQEVIDNSVDEALAG-- 50 L+ + +R+RP MY + + E++DNS+DEA+ Sbjct: 30 LSDRDHIRKRPNMYVGSVNREAHERFIMGKFRKVEYVEGLVKIINEILDNSIDEAIRTDF 89 Query: 51 -HAKRVDVILHADQSLEVIDDGRGMP---VDIHPEEGVPAVELILCRLHAGGKFSNKNYQ 106 A R++V + + + D+GRG+P V + VP +G F ++N + Sbjct: 90 KFANRIEVKIDH-NLVTISDNGRGIPQDDVRTPEGKIVPKPVAAWTMAKSGSNFDDEN-R 147 Query: 107 FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVH 166 + G++GVG + N S + I +G + D + T + GT+V Sbjct: 148 VTMGMNGVGSFLTNCYSSIFIGETSNGKRKVTINCTDGAQNMDYR---TSPTKEQGTTVK 204 Query: 167 FWPDETFFDSPRFSVSR---LTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL 223 F PD + F + L A AV P V+ T+ E + Y Sbjct: 205 FTPDFSIFGVDGIDEETKEVIKDRLMALAVAFPSVKFTYNGETLPNK--------FAMYG 256 Query: 224 AEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGL 283 A + T + + +S+VN + T GG HV+ + Sbjct: 257 AMYGDSTIT-------------QTNNKISFILASTEDGFKQKSFVNGLDTKNGGVHVDCM 303 Query: 284 RQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSV-KMQDPQFAGQTKERLSSRQC 342 G+ + + ++ +++ + + V+ + P F QTKE+L++ Sbjct: 304 IDGIYAELEPMIKKKH----AIEIPKARVKECLTLVVFLHNFNAPAFDSQTKEKLTNTAG 359 Query: 343 AAFVSGVVK-DAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKL 401 + + + + E A+ Q AA +KK Sbjct: 360 EFNNHAGLNYKKIAKQIMDTSEIITPIIESALIRKQAAEAAAITKAKKKAKKAKIAKHVP 419 Query: 402 ADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV 461 A D T LFL EGDSA G + R+ E Q PL+GK LNTW +S ++L ++E+ Sbjct: 420 ASGIDTDGVETTLFLTEGDSAVGQFIECRNEETQGAFPLRGKPLNTWGMSFTDILKNKEL 479 Query: 462 HDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYV 521 ++ + + P D S++ Y I I+ DAD DG I TLL A F + + L + + Sbjct: 480 FELMAILNLHPG--DSSEMAYDNIGIMVDADVDGGDILTLLIAFFSR-WPELFEKKKIRY 536 Query: 522 ALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDP 581 P+ +GK+ + + ++ ++ K V+ KGLG + + L Sbjct: 537 IRTPIIIAKIGKDEKWFYSMDDFVPFRDKAK------EVRYIKGLGSLRKSD-YDRVLGD 589 Query: 582 NTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 + + DD D ++++ + S+ R++W Sbjct: 590 QLKYDTIVLGDDYKD-----VLELCFG-EESDPRKDW 620 >UniRef50_Q76Z86 Topoisomerase II large subunit n=1 Tax=Aeromonas phage Aeh1 RepID=Q76Z86_9CAUD Length = 613 Score = 347 bits (891), Expect = 6e-94, Method: Composition-based stats. Identities = 163/653 (24%), Positives = 261/653 (39%), Gaps = 87/653 (13%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT--------------------RPNHLGQEVI 40 M+Q + +VL+ E MY +T + EVI Sbjct: 1 MSQEF-----KVLSDKEHCLINTDMYIGSTSTETHDVLVDGKFVQIAYVPGLVKITDEVI 55 Query: 41 DNSVDEALAG---HAKRVDVILHADQSLEVIDDGRGMPVDIH---PEEGVPAVELILCRL 94 DNSVDEA+ HA +++V++ D + V D+GRG+P + VP R Sbjct: 56 DNSVDEAIRTNFEHANQIEVVI-KDNQVSVKDNGRGLPQGMVVTPEGVEVPLPLAAWTRA 114 Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG 154 AG FS + + G +GVG ++ N S V G N D Sbjct: 115 RAGSNFSAD--RKTIGKNGVGSALTNFFSDSF---VGETGNGTNTVTVRCTNNADEVSYT 169 Query: 155 TCGKRNTGTSVHFWPDETFFDSPRFSVSR---LTHVLKAKAVLCPGVEITFKDEINNTEQ 211 T + GT+V F PD T F + + L AV P ITFK Sbjct: 170 TKAGKFKGTNVTFVPDFTRFGVFQLDEDFEQVIQSRLLTLAVNFP--PITFK-------- 219 Query: 212 RWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLI 271 Y + V G + F + + + V + E S+VN + Sbjct: 220 ----------YNGKKVEGKFSKFAAQFGDVVSHNDDNVSL---FFATSEEYRQLSFVNGV 266 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVK-MQDPQFA 330 T QGG HV G+ L D + + ++ ++++ I + L ++ + P++ Sbjct: 267 HTKQGGNHVYGVLDSLSDELIPMIKRQH----KIEINKARIKECLLIGLFIRNLVAPKYD 322 Query: 331 GQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKK 390 GQTKERLSS + + + + ++ E++ + S+ ++ A K K Sbjct: 323 GQTKERLSSPWAQ--IRDHMNLDYKALARKILKTPEVIDPIIASALAKKEAADKAAATKA 380 Query: 391 LTSGPALPGKLADCTAQ-DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWE 449 A +T LFL EGDSA G + R+ E Q PL+GK+LN W Sbjct: 381 QKKAKKANVAKHVAAAGLGRLKTMLFLAEGDSAIGPFTRFRNEETQGSYPLRGKMLNVWN 440 Query: 450 VSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDG-LHIATLLCALFVK 508 + EVL ++E+ D+ + ++ S + Y I I+ DAD DG IA L A F K Sbjct: 441 LPDHEVLKNKEIADLLGILNVELRSKEAPA--YTDIAIMTDADQDGKGSIAMLAIAFFYK 498 Query: 509 HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGE 568 + + G +++ P Y GK+ ++ + +E K+ GK + KGLG Sbjct: 499 FWPHWFEQGRIHIVRTPEYISTNGKKTDWSYSRDEFRS-----KKFDGKWTHRHIKGLGS 553 Query: 569 MNPMQLRETTLDPNTRRLV--QLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + ++ + LV Q+ IDD+ T +++ML + R+ WL Sbjct: 554 LT-VEGDDCEYKQCIENLVLEQVVIDDQ----TPELLEMLFGDDEHK-RKQWL 600 >UniRef50_B2ZYK3 Type IIA topoisomerase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYK3_9CAUD Length = 882 Score = 345 bits (886), Expect = 2e-93, Method: Composition-based stats. Identities = 140/523 (26%), Positives = 225/523 (43%), Gaps = 35/523 (6%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRPNHL---GQEVIDNSVDEALAGHAKRVDVILHA 61 Y++ +IE VR P MY L +E++DN DE +A V + A Sbjct: 9 YDSTSIETQRFPHNVRASPAMYIGGVDAYGLWTVTKELLDNGADEFMAQRNDAVFLHFDA 68 Query: 62 DQSLEVIDDGRGMPVDIHP----------EEGVPAVELILCRLHAGGKFSNKNYQFSGGL 111 D S V D G G+P + + +P ++ + LH GK+ ++ Y S G Sbjct: 69 DGSYWVWDHGHGIPQGVKTFKLNLNGKVVTQKMPTMQAVFGELHTSGKYRSEAYAVSIGS 128 Query: 112 HGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDL-----QVVGTCGKRNTGTSVH 166 HGVG NA ++ +V +G+ +I F+ GE Q + + T GT +H Sbjct: 129 HGVGSKGTNATAEYFDVWTLYEGRWSSIKFKKGELAQPVKECSAPKLPTGKPLKKGTLIH 188 Query: 167 FWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEA 226 F PD + F F S + + PG+ I + + + + G +Y+ Sbjct: 189 FKPDASIFSVKSFPPSMAVEWATVMSYMNPGLSIHLSSKK--GAKTYLSKKGPQEYIEHR 246 Query: 227 VNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 + L T E+ F + D L + G N + QGG HV+ + Sbjct: 247 LAALKTEGER---QMFVHHDDLSDVVLAFTNYDGCD-IRGMTNSVTNGQGGKHVDSVTGA 302 Query: 287 LLDAMREFCEYRNILPRGV-----KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQ 341 + ++ + + + + G D+ + +++ K+ QF+ Q K RL+ + Sbjct: 303 VYAGLKPWIKTKKVKEDGKVKVVPAFRETDLKEGLVGLVNAKLHKAQFSSQDKARLTDNR 362 Query: 342 CAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR---AAKKVVRKKLTSGPALP 398 + F+ + +N A+ L + A + + + + K LP Sbjct: 363 LGKDYEEAITKKFVAFFKENKALAQRLCDRATKLNELKTKFTMSKKAAATLNAVKRNGLP 422 Query: 399 GKLADCTAQ-DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLA 457 K A + ++ ELFLVEGDSAGGS K AR YQA++PLKGK+LN + + + L Sbjct: 423 AKYAAFNSDTKVHDRELFLVEGDSAGGSLKDARLP-YQAVLPLKGKVLNALKDNKGKALE 481 Query: 458 SQEVHDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLHIA 499 S E+ +I AIG D +D LS+L GKI LAD D DG +A Sbjct: 482 SDEIINILAAIGYDTKAADPLSKLTVGKIICLADPDPDGPFVA 524 Score = 79.2 bits (194), Expect = 4e-13, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 10/123 (8%) Query: 497 HIATLLCALFVKHFRALVKHGHVYV-ALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKK 555 HI +LL LF K+ L G VYV A P Y I + +T + V +LK+ K Sbjct: 701 HINSLLLGLFYKYLPDLFDKGMVYVSAAPEFYSIYKDQ----LVTGDTLSAVQVKLKKLK 756 Query: 556 GKPN--VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 + + KG GE + +R DP TRRL+++ DD+ ++ + Sbjct: 757 APTSTAIHHLKGWGEASENLMRVLAADPATRRLIKIKAISHDDKVD---FVKVMNEDVEY 813 Query: 614 DRR 616 RR Sbjct: 814 RRR 816 >UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5CQG8_CRYPV Length = 1797 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 90/390 (23%), Positives = 171/390 (43%), Gaps = 17/390 (4%) Query: 251 WALLWL-PEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSA 309 W ++ +GG+ S+VN I T++GGTH++ + L++A+ + + +N G+ + + Sbjct: 417 WEIVISESDGGQFQHVSFVNSICTIKGGTHISYVLDPLINAILKKVQTKN--KGGMDVKS 474 Query: 310 EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLA 369 + + + + +P F QTKE L+++ + + I + ++ +L Sbjct: 475 NHVKNHIWIFIKCLIVNPSFDSQTKETLTTKVSKFGSVCTLSEKTINSVVKSSIVENVLM 534 Query: 370 EMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD---LNRTELFLVEGDSAGGSA 426 + + + K + +TS KL D + L L EGDSA S Sbjct: 535 WAQLKQSMELKKKMKSNQKNTVTSRLLGIPKLEDANEAGGPHSKKCTLILTEGDSAKTSC 594 Query: 427 KQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLS---QL 480 R+Y + PL+GK+LN E S + + + E+ +I +G+ + L Sbjct: 595 LAGLSIVGRDYFGVFPLRGKLLNVREASFKQQIGNVEIQNILKILGLGIGQKYDNGPVNL 654 Query: 481 RYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYAL 539 RYG + ++ D D DG HI L+ L ++ +L+ G + + P+ + G Sbjct: 655 RYGSLMLMTDQDHDGSHIKGLIINLIHYYWPSLIHFRGFLKQFVTPIVKAKKGSNEISFF 714 Query: 540 TEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRT 599 T E E + + +KGLG ++ +E + +DD+DD Sbjct: 715 TLYEYEQWRKNNSSNLNGWRFKYYKGLGTSTDLEFKEYFTKIENHSIEFDWMDDQDD--- 771 Query: 600 DAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 +DM +KKR+EDR+NW++ + ++ Sbjct: 772 -EAIDMAFSKKRTEDRKNWIESYKEGTYVD 800 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 90/251 (35%), Gaps = 42/251 (16%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPN--------------------------HLGQEVI 40 + + T +E + RP Y +T + + E++ Sbjct: 34 EERYQKKTQIEHILLRPDTYIGSTEFHEQALWVWDDSNMKMVYKTINYVPGLYKIFDEIL 93 Query: 41 DNSVD----------EALAGHAKRVDVILHADQ-SLEVIDDGRGMPVDIHPEEGVPAVEL 89 N+ D + + V ++ ++ + V +DG G+P++IH E V EL Sbjct: 94 VNAADVKAREISTKNNHIFEKCTCIKVEINREKKEITVFNDGEGIPIEIHREHQVYVPEL 153 Query: 90 ILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFENGEKV 147 I L + + + +GG +G G + N SK +V + G+++ + + + Sbjct: 154 IFGHLLTSDNYDDNEDRVTGGRNGFGAKLTNIFSKEFKVECGDNNTGRIFKMTWYDNMSK 213 Query: 148 QDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLC---PGVEITFKD 204 + + + + + F PD + F + + + +L + GV++ Sbjct: 214 KSEENIKENYSGKSYVKITFKPDLSRFGNMKDFDDDIISLLNKRVYDISGTSGVKVYLNG 273 Query: 205 EINNTEQRWCY 215 + + Y Sbjct: 274 SLIPIKDFKSY 284 >UniRef50_C0DAN0 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAN0_9CLOT Length = 422 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 120/405 (29%), Positives = 174/405 (42%), Gaps = 80/405 (19%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Y A+ I++L GLE VR+RP MY T +HL E++DN+VDEALAGH V V Sbjct: 19 KNEYRAEQIQILEGLEAVRKRPAMYIGNTSSAGLHHLVCEIVDNAVDEALAGHCSAVSVT 78 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+ D S+ + D+GRG+PV I + G+ A++++ LHAGGKF + NY+ SGGLHGVG SV Sbjct: 79 LNRDGSVTITDNGRGIPVGIQKKTGLSALQVVFTVLHAGGKFDSSNYKVSGGLHGVGASV 138 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK---VQDLQVVGTCGKRN--------------- 160 VNALS + V VRRDG + ++ G V + V C Sbjct: 139 VNALSLWLRVEVRRDGGTWKQSYSRGVPDGAVTKEEAVRGCATGPLARQDDPIPLTRQDD 198 Query: 161 ------------------------TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCP 196 +GT+V F PD F P F L ++ A L Sbjct: 199 PVPSARNEAPFSPARQGALDTVSVSGTTVTFLPDPEIFRDPVFQYEVLKKRMRETAFLTK 258 Query: 197 GVEITFKDEINNTEQ---------------------------------RWCYQDGLNDYL 223 G+ +T D + + + + GL D++ Sbjct: 259 GLSLTLTDLRADCKHGSNTAATPDATTADAPKSPESSNLPQPTLPRQDHFLCEKGLEDFV 318 Query: 224 AEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGL 283 L + G V++A+ G + S+VN I T +GG+HV G Sbjct: 319 NWLNRDASPLYSEIICGGADSGDIQVEFAIQHTA-GYDQRLYSFVNNISTPEGGSHVTGF 377 Query: 284 RQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDP 327 L+ A+ +L L E++ + V+SV+MQDP Sbjct: 378 HSALVRALNHCARNLKLLKESAPPLCREELTEGLTAVISVRMQDP 422 >UniRef50_Q0QCK3 ParE (Fragment) n=163 Tax=cellular organisms RepID=Q0QCK3_ECOLX Length = 251 Score = 338 bits (868), Expect = 3e-91, Method: Composition-based stats. Identities = 251/251 (100%), Positives = 251/251 (100%) Query: 290 AMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 AMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV Sbjct: 1 AMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 60 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 409 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL Sbjct: 61 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 120 Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG Sbjct: 121 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 180 Query: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI Sbjct: 181 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 240 Query: 530 DLGKEVYYALT 540 DLGKEVYYALT Sbjct: 241 DLGKEVYYALT 251 >UniRef50_Q196X4 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 3 RepID=TOP2_IIV3 Length = 1113 Score = 335 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 125/633 (19%), Positives = 212/633 (33%), Gaps = 88/633 (13%) Query: 35 LGQEVIDNSVDEALA----GH--AKRVDVILH-ADQSLEVIDDGRGMPVDIHPEEGVPAV 87 + EV+ N+VD GH K + V + V +DG+ +PV + + GV Sbjct: 60 IFVEVLTNAVDNIERSINGGHELCKNIKVDVDLKTGKTSVWNDGQVIPVVKNCDNGVVQP 119 Query: 88 ---------------------ELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRV 126 +I + N+ Q S G +GVG+ N S Sbjct: 120 PPPTTEQDRLAYEKLNREYIHTIIFGHFRTSSNYDNETDQVS-GKNGVGVKCTNIFSSWF 178 Query: 127 EV-NVRRDGQ-VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVS-- 182 V V D + ++ + + V C + T V + PD F + Sbjct: 179 SVVGVDPDRKLKFSQEWRSNMTKSGAPQVVKCALKTGYTLVEYVPDFARFKLKSYPEDVE 238 Query: 183 -RLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGN 241 ++ + P F E + Y N T + I Sbjct: 239 SIFKKLVVDASAFFPNTAFFFNGERTVVKNAVAYAK-------LYYNLNETAVDSVVIDY 291 Query: 242 FAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNIL 301 D ++ + L S+VN T GG HV + + A+ Sbjct: 292 K-------DSKVVVVGSATPLPPVSFVNGQITPAGGQHVTNWSRVIFGALLAALNG---- 340 Query: 302 PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 + V L+ DI + K+ P+F GQ K L S + A + + + W Sbjct: 341 KKNVSLTKADIAPYFQLFIHSKVSKPKFDGQNKNCLKSPKVEAHLDATILKKMLKW---- 396 Query: 362 VQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDS 421 + + + + S + + R + + L + EG S Sbjct: 397 -KIISTIQDKVVKSKEYLALKKIECRRTPIVKVDGYDQANRLGP-----DSVLIVCEGLS 450 Query: 422 AGGSAKQA--------RDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD 473 A A + R Y I+PL+GK LN + ++ ++ V D + + + Sbjct: 451 AKSYAVAGIQKGLFNKKGRTYFGILPLRGKFLNVKNTTPLKIGQNKVVSDFIKVLNLKFN 510 Query: 474 SD-----DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV-KHGHVYVALPPLY 527 D + + L YG + IL DAD DG+HI L+ L + F L + G +Y P+ Sbjct: 511 LDYRKATNYATLNYGTLLILTDADKDGIHIKGLILNLIHELFPTLFHRQGFIYSMETPIV 570 Query: 528 RI-DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 +I + E E Q K + +KGLG + P + R Sbjct: 571 KILHKKGQPTLFYDENSFEDWRAQHPELKHF---KYYKGLGTIGPADVAAFFGSKVVRY- 626 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 D+ TDA ++ + + + +R+ WL Sbjct: 627 -------HYDEATDAAVNSVFKDENANERKEWL 652 >UniRef50_B4V0A2 DNA gyrase subunit B n=1 Tax=Streptomyces sp. Mg1 RepID=B4V0A2_9ACTO Length = 387 Score = 334 bits (857), Expect = 7e-90, Method: Composition-based stats. Identities = 121/391 (30%), Positives = 182/391 (46%), Gaps = 18/391 (4%) Query: 1 MTQT---YNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKR 54 M++ Y+A I+VL G E VR+RPGMY +T + EV D +V+E LAG A Sbjct: 1 MSEEDTRYDASHIQVLEGWEAVRKRPGMYVGSTSERGLRQMVFEVADRAVNEVLAGRAAS 60 Query: 55 VDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGV 114 VD+ L D + V DDG G+P+D G P +E +L ++ AG + + + G GV Sbjct: 61 VDITLMPDGGVCVADDGPGVPIDETEGAGGPGLEALLTQMQAG-VGTGGRHDVTLGFCGV 119 Query: 115 GISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF 174 G +VVNALS R+ VRR+G ++ + G L VGT +GT++ FWPD F Sbjct: 120 GPAVVNALSCRMTAEVRREGVLWVQEYARGVAATPLTEVGTA--TGSGTTIAFWPDADIF 177 Query: 175 DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWC---YQDGLNDYLAEAVNGLP 231 + FS L + A L G+EI+ D E R + G D + Sbjct: 178 GATEFSFDGLEERFREVAFLNQGLEISLTDLRRPDESRSVRLRFPGGTRDLVDFLDGHAA 237 Query: 232 TLPEKPFIGNFAGD---TEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288 I D ++ A W GE + S+ N PT+ GGTH G R G+ Sbjct: 238 ASTPVDTIAFECEDPRMGGVMEVAFRWCSCPGERVQ-SFANSRPTV-GGTHAVGFRDGMT 295 Query: 289 DAMREFCEYRNIL-PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 A+ + + +L P A+ I + V+SVK+ P+F G T+ L + + V Sbjct: 296 AAVTAYAREQGLLTPMDPGFDADRIGEGLTAVVSVKLDRPEFEGSTRGVLGNSEVRDCVG 355 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQR 378 V+D WL ++ + A + ++ A+R Sbjct: 356 QAVQDHLGRWLKEDRERAAAVIGQSVQGARR 386 >UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEU4_9VIRU Length = 1103 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 129/662 (19%), Positives = 232/662 (35%), Gaps = 78/662 (11%) Query: 9 AIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVID------------------------NSV 44 ++VLT + + RPGMY P +EV+ N+ Sbjct: 5 KMQVLTQHDHILARPGMYVGGVEPVEYNKEVMTMTGPKHVKEMMVPALLKIIEEPLANAS 64 Query: 45 DEALAGH-AKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK 103 D + AK + V S I+ ++ P+ +V L + R G F + Sbjct: 65 DASQNNPVAKNIKVTTDQRDSSIKIETNTKFVIEYVPDGNDYSVALAVSRFMTGTNFGDD 124 Query: 104 NYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTCGKRNT 161 + F G HG+GI + N SK EV V Q Y+ + N + VV + Sbjct: 125 DESFKLGQHGLGIKLTNVFSKYFEVVVHDPSTKQSYHGIWTNNMYTVEKSVVKKASHKTP 184 Query: 162 GTSVHFWPDETFF----DSPRFSVSRLTHVLKAKAVLCPG-VEITFKDEINNTEQRWCYQ 216 S+ F PD +F + + AV P + E + Sbjct: 185 YVSITFIPDLPYFGLRGPLTAGQWDIIHSQVFDLAVTAPKHTTVHLNGEKIPFK------ 238 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 G+ Y+ + +L + T ++ A+ + E + YVN T +G Sbjct: 239 -GIKGYIQAVMGD--SLDKICMDKVEVNGTVRLEVAVTIARDHAESIV--YVNGAHTTRG 293 Query: 277 GTHVNGLRQGLLDAMREFCEYR--NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK 334 + ++ N L + ++ + V + + +F Q K Sbjct: 294 -------------TIHDYIFKNIANALSKKHNINPSMLRGLLLIVAEAWIPNARFTSQAK 340 Query: 335 ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSG 394 E L + + +FI L + + + ++ + KV + K+ Sbjct: 341 EELYTPVSKYGFKWDLSQSFIKSLAKTDLYTS-VVNLLHDKDDKKAQKDMKVGKNKIPQF 399 Query: 395 PALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD----REYQAIMPLKGKILNTWEV 450 D EL + EGDSA A R+ + PL+GK++N Sbjct: 400 AKYDPATKLFKVND---AELLITEGDSAKQLANVGRNAVKRHANMGLYPLRGKLMNAGNS 456 Query: 451 SSDEVLASQEVHDISVAIGIDP-DSDDLSQLR---YGKICILADADSDGLHIATLLCALF 506 S + A++E+ ++ +GI P DL+ R Y + I D D DG HI+ L L Sbjct: 457 SLKALAANKEISELIQILGITPYKKYDLASARALPYRHLVIFTDQDVDGSHISGLCIQLI 516 Query: 507 VKHFRALVK--HGHVYVALPPLYRIDLGKEV-YYALTEEEKEGVLEQLKRKKGKPNVQRF 563 + +L++ ++ P+ +I GK T+ E ++ K +V+ + Sbjct: 517 MTLVPSLLEVFPDYIKRFATPILKITSGKHAGKTFYTDAEYREYTDKHPDSKN-ASVKYY 575 Query: 564 KGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG 623 KGLG ++ + + + + Q + M + K S +RR +L + Sbjct: 576 KGLGTSTDKDAKQYFTEWSK----NVITINNTGQPSTEAMKLAFDAKMSAERREYLANQY 631 Query: 624 DM 625 + Sbjct: 632 NP 633 >UniRef50_Q04PE7 DNA topoisomerase (ATP-hydrolyzing), subunit B n=6 Tax=Leptospira RepID=Q04PE7_LEPBJ Length = 711 Score = 317 bits (813), Expect = 7e-85, Method: Composition-based stats. Identities = 147/724 (20%), Positives = 286/724 (39%), Gaps = 129/724 (17%) Query: 7 ADAIEVLTGLEPVRRRPGMYTD----TTRPNHLG-------QEVID-------------- 41 + L+ +E VR R GM+ +T H E++ Sbjct: 15 ERNFKKLSNVEHVRMRTGMWLGQNSASTFEQHFFRKNNEGKYEIVHEELEDVPAKLKCLD 74 Query: 42 ----NSVDEALA----------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPA 86 N+VDE ++ V L +D + + + D+GRG+P Sbjct: 75 EACMNAVDEYRKNQKDKTIPEKDKMSKLIVQLSSDRKCVTITDNGRGIPAA--------N 126 Query: 87 VELILCRLHAGGKFSNKNYQ-FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAF---- 141 E + L G F + Q G +GVGIS+V +S +V +G + F Sbjct: 127 AEGVYLHLMYGENFDDHVKQDHVAGQNGVGISLVRMVSNYFKVKTVNNGSSFKKLFTVHD 186 Query: 142 ------------------------ENGE--------------------KVQDLQVVGTCG 157 E+G+ K + + Sbjct: 187 DVKKQIRSYKLSKEDIERVFLYFDEHGKFTDCNLLTKDQIDKLNSLLKKTNMQESIEKAS 246 Query: 158 KRNTGTSVHFWPDETFFDS--PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY 215 K + GTSV F + +F++ F+V + L+ A+ PG+E+ F + + ++ Sbjct: 247 KEDHGTSVEFELNPKYFNNLDISFNVDLMKQYLQDIAMTNPGLEVQFVFKGKKEKYKFKK 306 Query: 216 QDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQ 275 L E + + K ++ A L G+ ++VN I Q Sbjct: 307 G------LDEIFSHSDLVYYKM---DYTAPGSASQLHLETYLVIGQNKNLTWVNSIFAPQ 357 Query: 276 GGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK 334 GG+ + L + D +R+ + + + + D+ + ++ ++ +P+F Q K Sbjct: 358 GGSAIEYLENRICDEVRKKSQIVALEKKLKTSSTRNDVRNCFHMYVNARLLNPRFKSQDK 417 Query: 335 ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSG 394 L + + V ++ + E+ +M + + A+K ++K Sbjct: 418 SYLIN-DLNEDIRNAVDKHLEKFIKKTGLLEEIKLQMEKRTQLKAFEDAQKGLKKASRMN 476 Query: 395 PALPGKLADCTAQ-DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD 453 KL T + LF+ EGDSA + AR+ + + PL+GK LN +S Sbjct: 477 I---PKLMPPTGKPGDPGRVLFVAEGDSAIAGLRPARNPKLHGLFPLRGKPLNCKGLSIA 533 Query: 454 EVLASQEVHDISVAIGI--DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 + +A++E+ +I +G+ D + +L Y K+ I+ DAD DG I +L+ + F +++ Sbjct: 534 KAIANEELKNIVAIVGLPLDQKVKSVDELNYDKVSIITDADFDGYAIRSLMLSFFYEYWP 593 Query: 512 ALVKHGHVYVALPPLYRI-----DLGKEVYYALTEEEKEGVLEQLKRKKGKPN-VQRFKG 565 L + G ++++ PLY + D KE + + +++ E +++++++ G+ +R KG Sbjct: 594 ELFELGFIHISSAPLYEVDVKFGDKKKETVFCIDDKDYEDLIKRVEKNGGEITRKKRNKG 653 Query: 566 LGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 LGE ++ + T+ +TI ++ D + ++ K +E RR+ + E M Sbjct: 654 LGETGKEAMKFAVDECMTK----ITIGNKKD--ASKIQNLWFHKDFAEQRRDAISEYA-M 706 Query: 626 AEIE 629 + IE Sbjct: 707 SVIE 710 >UniRef50_B5H7D6 DNA gyrase subunit B n=2 Tax=Streptomyces RepID=B5H7D6_STRPR Length = 391 Score = 313 bits (803), Expect = 1e-83, Method: Composition-based stats. Identities = 117/381 (30%), Positives = 174/381 (45%), Gaps = 16/381 (4%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHAKRVDVI 58 Y+A IEVL GLE VR+RPGM+ +T L Q EV+ +V+E +AG A V V Sbjct: 5 AHMYDATHIEVLEGLEVVRKRPGMWVGSTGERGLHQMVFEVVGRAVNENVAGRAGSVAVA 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK-NYQFSGGLHGVGIS 117 L D + V DDG G+P + E P +E +L R+HA + S +G+G+ Sbjct: 65 LMPDGEVRVTDDGPGVPAEAVGEAVGPCLEDMLTRIHAQQDAGGRRAIAVSPLGNGLGLG 124 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 V NAL+ + VRRDG + + +G V G +G ++ F PD F++ Sbjct: 125 VPNALASSLTAEVRRDGVRWVQVYASGVAVGPPTAAGPA--VGSGITLAFRPDAGIFETV 182 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE---QRWCYQDGLNDYLAEAVNGLPT-- 232 S L + A L G++I+ DE + E +R+ G D++ G T Sbjct: 183 ECSFDVLAERFRELAFLNRGLDISLSDERSAGECRSERFHSPGGTRDFVLLLGEGRGTGA 242 Query: 233 LPEKPFIGNFAGD---TEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 L + IG D AV+ AL W E +Y N PT +GGTH G R G+ Sbjct: 243 LVQTDVIGFEREDPRMAGAVEVALQWRDSD-EERVRTYANSRPTPEGGTHAEGFRDGVAA 301 Query: 290 AMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 A+ + R +L L A+ I V+SVK+ P F G T L + + V Sbjct: 302 AVNAYARQRRLLTSADADLGADRIGKGLTAVVSVKLDQPGFRGATCAELDNTEARFGVEE 361 Query: 349 VVKDAFILWLNQNVQAAELLA 369 V++ +WL ++ + A + Sbjct: 362 AVREHLGIWLERHPEQAAAVI 382 >UniRef50_Q8I528 Term=DNA gyrase subunit B;evidence=inferred from direct assay n=3 Tax=Plasmodium RepID=Q8I528_PLAF7 Length = 1006 Score = 308 bits (789), Expect = 4e-82, Method: Composition-based stats. Identities = 114/414 (27%), Positives = 189/414 (45%), Gaps = 60/414 (14%) Query: 195 CPGVEITFKDEINNTE-QRWCYQDGLNDYLAEAVNGLPTL---PEKPFIGNFAGDTEAVD 250 +EIT + ++ + ++ GLN+Y+ L +K + +D Sbjct: 441 NKNIEITDYNNLDFYNYEIIKHEYGLNEYITNITKNKTNLFKDNDKIISISCYHKNIYID 500 Query: 251 WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAE 310 + WL S+VN + T GGTHV+ L+ + + + ++ V + E Sbjct: 501 LRMKWLSNQYNENIISFVNNVNTTDGGTHVDALKYAVSRCVNYNIKKNEMIKNFVNIPGE 560 Query: 311 DIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAE 370 I + +LSVKM +P+F GQTK +L S + + V+ + + + Sbjct: 561 YIREGLTAILSVKMNNPEFEGQTKTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSIYF 620 Query: 371 MAISSA--QRRMRAAKKVVRKKLTSGPA--LPGKLADCTAQDLNRTELFLVEGDSAGGSA 426 A+ + +AA+ ++R K + LPGKL DC + D++R E+F+VEGDSA GSA Sbjct: 621 KALQAKLSDEEAKAARDLIRSKNNQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGSA 680 Query: 427 KQARDREYQAIMPLKGKILNTWEVSSDE-VLASQEVHDISVAIGIDPDSDDL-------- 477 KQAR+RE QAI+PLKGKILN ++ +++ + + E+ + A+G++ + D+ Sbjct: 681 KQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITALGLNVNYDNKNLKNNNIL 740 Query: 478 ---------------------------------------SQLRYGKICILADADSDGLHI 498 + LRYGK+ I+ DAD DG HI Sbjct: 741 SNNKKGKNSKKKSDLKNSRFESTQNNNNILNKKKDILVDNTLRYGKVIIMTDADVDGEHI 800 Query: 499 ATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK 552 LL + + ++++G+VYVA PPLY+I K K+ V +Q Sbjct: 801 RILLLTFLYRFQKEIIENGNVYVACPPLYKITYNK----FFDNSIKDIVTKQFN 850 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 121/268 (45%), Gaps = 54/268 (20%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+A I +L GLE VR+RPGMY T + + E+IDNSVDE + V++H Sbjct: 122 NYDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNTIKVVIH 181 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN---------------- 104 D S+ + D+GRG+P D+H + A+E +L LH+G KF + Sbjct: 182 KDDSVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNTN 241 Query: 105 ---------------------------------YQFSGGLHGVGISVVNALSKRVEVNVR 131 Y++S GLHGVG+SV NALS ++V V Sbjct: 242 TSEKNNRDNISNNNNNNNNNKRTKKNSKESAQKYKYSSGLHGVGLSVANALSSFMKVKVF 301 Query: 132 RDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD-SPRFSVSRLTHVLKA 190 R+ ++Y+I E G+ ++L + C GT +H+ PD + F S + + + + + Sbjct: 302 RNNKIYSIELEKGKVTKEL-TITNCPINKRGTQIHYKPDSSIFKSSTKHNSDLIKNRIHQ 360 Query: 191 KAVLCPGVEITFKDEINNTEQRWCYQDG 218 A L + F DE + + G Sbjct: 361 LAYLNEKLTFYFYDERSENKNSIYISKG 388 Score = 63.4 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 3/74 (4%) Query: 551 LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKK 610 L K +QRFKGLGEM QL TT+DP R+L+++T++ D R + ++ L+ + Sbjct: 932 LFNFSKKYEIQRFKGLGEMMADQLWNTTMDPTVRKLIRVTVN--DAIRANDLIFSLMGED 989 Query: 611 RSEDRRNWLQEKGD 624 S+ R+N++ E + Sbjct: 990 -SKLRKNFILENTN 1002 >UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK44_PARTE Length = 1196 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 143/332 (43%), Gaps = 12/332 (3%) Query: 298 RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 + + + L+ ++ +P F QTKE L+++ + V + F+ Sbjct: 5 KKKYKEMKNIKPFQVKSFIKIFLNCQIVNPAFDSQTKETLTTKAQKFGSTFEVSEKFLDE 64 Query: 358 LNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLV 417 + + + + + A S +++ +++ G D ++ + L L Sbjct: 65 IIKKTEIIDNVILQAKSRLNKQLSKQLSAKKQQRLLGIDKLEDANDAGTKNADLCTLILT 124 Query: 418 EGDSAGGSAKQA---RDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI--DP 472 EGDSA A R+ + PL+GK+LN + S ++ + E+ + +G+ + Sbjct: 125 EGDSAKSLAMAGIEIVGRDRFGVFPLRGKLLNVRDASIQMIMKNAEIEQLVKIMGLQFNK 184 Query: 473 DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDL 531 + ++ LRYG I I+ D D DG HI L+ K + +L K G + + P+ ++ Sbjct: 185 NYENTKSLRYGSIMIMTDQDHDGHHIKGLIINFIEKFWPSLFKMKGFLKQFVTPIIKVTK 244 Query: 532 GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 GKE + + E + + + R+ V+ +KGLG + ++ + R V Sbjct: 245 GKEFHSFFSIGEYKKFIAENPRED--YKVKYYKGLGTSTDSEAQQYFSNLTLHRKVFTYS 302 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG 623 D D +D++ +K +++ R++WL E Sbjct: 303 DQTD----SDYIDLVFSKTKADQRKDWLSEYS 330 >UniRef50_P09176 DNA topoisomerase large subunit n=13 Tax=T4-like viruses RepID=TOPL_BPT4 Length = 516 Score = 274 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 116/500 (23%), Positives = 205/500 (41%), Gaps = 63/500 (12%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTT--------------------RPNHLGQEVIDNSVDEA 47 + I++L+ +E +++R GMY ++ L E+IDNSVDE Sbjct: 4 NEIKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEG 63 Query: 48 LAG---HAKRVDVILHADQSLEVIDDGRGMP---VDIHPEEGVPAVELILCRLHAGGKFS 101 + A +++V + + + V D+GRG+P V E +P AGG F Sbjct: 64 IRTKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFG 122 Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNT 161 + + +GG++GVG S+ N S + NG + + + + + Sbjct: 123 DDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWEDIP---GKWK 179 Query: 162 GTSVHFWPDETFFDSPRFSVSRLT---HVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG 218 GT V F PD F++ S L L+ AV+ P ++ TF N + + ++ Sbjct: 180 GTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTF----NGKKVQGNFKKY 235 Query: 219 LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGT 278 Y A+ + E A+ P+G +YVN I T GG Sbjct: 236 ARQYDEHAI---------------VQEQENCSIAVGRSPDG--FRQLTYVNNIHTKNGGH 278 Query: 279 HVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVK-MQDPQFAGQTKERL 337 H++ + + + + + ++ + + V+ V+ M++ + QTKERL Sbjct: 279 HIDCAMDDICEDLIPQIKR----KFKIDVTKARVKECLTIVMFVRDMKNMRLIRQTKERL 334 Query: 338 SSR--QCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGP 395 +S + + + + + N + E A++ +AA+ KK + Sbjct: 335 TSPFGEIRSHI-QLDAKKISRDILNNEAILMPIIEAALARKLAAEKAAETKAAKKASKAK 393 Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEV 455 A+ +D T LFL EGDSA G RD+E PL+GK+LN+W +S ++ Sbjct: 394 VHKHIKANLCGKD-ADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYADM 452 Query: 456 LASQEVHDISVAIGIDPDSD 475 L ++E+ DI G+ Sbjct: 453 LKNKELFDICAITGLVLGEK 472 >UniRef50_C9E3K9 DNA gyrase subunit B (Fragment) n=1 Tax=Rhodococcus sp. BX2 RepID=C9E3K9_9NOCA Length = 352 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 85/351 (24%), Positives = 135/351 (38%), Gaps = 40/351 (11%) Query: 126 VEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLT 185 VE VR D + + + ++V + TGT+V FWPD F++ F+ + Sbjct: 2 VEPGVRHDKNMTDPLGRTYTNSKPGELVKGEPTKRTGTTVRFWPDPEIFETTTFNFETVA 61 Query: 186 HVLKAKAVLCPGVEITFKDEINNTEQ---------------------------------- 211 L+ A L G+ IT DE E+ Sbjct: 62 RRLQEMAFLNKGLTITLTDEGVAPEEVTDEDVPETAEAPKTAEDEAVEAAEPEVHKVKVR 121 Query: 212 RWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLI 271 + Y GL DY+ + G ++ A+ W E + ++ N I Sbjct: 122 TYHYPGGLEDYVRHINRTKSPIHNSVVGFTAKGTGHELEVAMQWNSGYSESVH-TFANTI 180 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFA 330 T +GGTH G R L + + + + +L L+ +DI + A ++SVK+ +PQF Sbjct: 181 NTHEGGTHEEGFRAALTTVVNRYAKDKKLLKDKDPNLTGDDIREGLAAIISVKVAEPQFE 240 Query: 331 GQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VV 387 GQTK +L + + +FV + W N A+ + A+SSA R+ A K V Sbjct: 241 GQTKTKLGNTEVKSFVQKACNEHISHWFEANPADAKTIVTKAVSSAHARVAARKARELVR 300 Query: 388 RKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIM 438 RK T GKL ++D + GDS +R + Q Sbjct: 301 RKSATEHRWSAGKLRRLPSKDPSSARSTSWRGDSQVAPQVGSR-LDVQGSF 350 >UniRef50_A3SXB5 DNA topoisomerase IV subunit B n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3SXB5_9RHOB Length = 308 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 145/247 (58%), Gaps = 9/247 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y+A +I+VL +E VR RPGMY +H+ E+IDNS+DEA+AGHA +++ Sbjct: 12 AKEYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDEAVAGHATWIELE 71 Query: 59 LHADQSLEVIDDGRGMPVDIHPEE-GVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 LH + + V D+GRG+P D HP++ A+E+I C L+AGGKFS +Y+ SGGLHGVG S Sbjct: 72 LHENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGLHGVGSS 131 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS + V V R+ +++ + F G L+ +G R GT+V F PD F Sbjct: 132 VVNALSDHLRVEVARNRELFAMEFSRGIPQGKLEKIGAAPNRR-GTAVTFHPDAEIFGPL 190 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFK----DEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 + +RL + ++KA L GVEI +K D E + + GL+DYL E + G T Sbjct: 191 KLKPARLFTMARSKAYLFSGVEIRWKCGQQDGDTPQEATFHFPGGLSDYLNETLKGSTTT 250 Query: 234 PEKPFIG 240 P P + Sbjct: 251 PSIPLVA 257 >UniRef50_A8NKQ4 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NKQ4_COPC7 Length = 919 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 74/307 (24%), Positives = 134/307 (43%), Gaps = 22/307 (7%) Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL 391 QTKE L+ + D FI + + +L A A ++M+ A R +L Sbjct: 357 QTKELLTLPSSKFGSKPTISDEFIKKVAHSGIVDNVL-NWAKFKADQQMKRADGTKRSRL 415 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTW 448 L + + L L EGDSA A R+ + PL+GK+LN Sbjct: 416 LGLAKLSD-ANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVR 474 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALF 506 E D+V+ ++E+ +I +G+ + D + S LRYG++ I+ D D DG HI L+ Sbjct: 475 EACHDQVMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRVMIMTDQDHDGSHIKGLIINFL 534 Query: 507 VKHFRALVKHG-HVYVALPPLYR-IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFK 564 + +L+K + + PL + G +V T E E LE+ + K + +K Sbjct: 535 DHLYPSLLKIPDFLVEFVTPLSGYVKKGNKVKDFFTIPEYEQWLEETPDAR-KWESKYYK 593 Query: 565 GLGEMNPMQLRETTLD--PNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 G E + + ++ + R + T++ +D+ +KK++++R+ WL++ Sbjct: 594 GFSEDKGAREYFSKMEKRFHLHRRKKGTVN----------IDLAFSKKKADERKEWLRQY 643 Query: 623 GDMAEIE 629 ++ Sbjct: 644 KPGTFLD 650 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 80/233 (34%), Gaps = 33/233 (14%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 +D + LT LE + +RP Y + E++ Sbjct: 106 SDHLMTLTQLEHILKRPDSYIGNIEIISTPMWTYDSETIRMVHREVKYVPGFFKIVDEIL 165 Query: 41 DNSVDEALAGH-AKRVDVILH-ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + + + + + ++ V ++GRG+P++IH +E + E+I L Sbjct: 166 VNAADNKINDPSMDTLKITIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTST 225 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S V + Q Y + + + Sbjct: 226 NYDDDEKKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITKN 285 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSR---LTHVLKAKAVLCPGVEITFKDEI 206 + T + F PD F + L + A V++ DE Sbjct: 286 TRGEEYTRITFRPDLKRFGMNSINEDTVNLLKRRVFDMADTVKDVKVLLNDER 338 >UniRef50_B1N7R8 Gyrase b (Fragment) n=1 Tax=uncultured bacterium RepID=B1N7R8_9BACT Length = 366 Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats. Identities = 114/369 (30%), Positives = 173/369 (46%), Gaps = 56/369 (15%) Query: 88 ELILCRLHAGGKFSNKNY-QFSGGL-HGVGISVVNALSKRVEVNV-RRDGQVY-NIAFEN 143 E+I+ LHAGGKF + +Y + SGGL GVG+SVVNALS ++ + + R GQV+ + + Sbjct: 1 EVIMTVLHAGGKFDDNSYTRVSGGLQDGVGVSVVNALSSKLHLIILHRAGQVHEKQEYHH 60 Query: 144 GEKVQDLQV-VGTCGKRNTGTSV-HFWPDETFFDSPR----FSVSRLTHVL-KAKAVLCP 196 G+ L+V +G ++GT+V FWP F F+V L L + + L Sbjct: 61 GDTQYPLRVLIGETD--SSGTTVNRFWPSGLTFSHGECRTIFNVEILARRLLRELSFLNA 118 Query: 197 GVEITFKDEINNTEQRW-CYQDGLNDYLAEAVNGLPTLPEKPF----------------- 238 GV I +DE N E + Y+ GL++++ +N T + F Sbjct: 119 GVRIVLRDERINLEHVYAXYEGGLSEFVKYFINEGKTHLNEIFHFXTADTENGIGVKYIN 178 Query: 239 --------IGNFAGDTEA---VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLR--Q 285 I +F D + V+ AL W + + N IP GGTH+ G R Q Sbjct: 179 EGKNHLNEIFHFTADADNGIAVEVALQWNDS-YQENVRCFTNNIPQKDGGTHLAGFRALQ 237 Query: 286 GLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAA 344 L + ++ E NIL + V ++ +D + ++SVK+ DP+F+ QTKE+L S + Sbjct: 238 ALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKP 297 Query: 345 FVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK------VVRKKLTSGP--- 395 V + F +L +N QAA+ +A I +A+ R A K RK Sbjct: 298 AVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREGSYMTRRKSALDIAYPI 357 Query: 396 -ALPGKLAD 403 PGKLAD Sbjct: 358 GLPPGKLAD 366 >UniRef50_B3SFQ4 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SFQ4_TRIAD Length = 303 Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats. Identities = 83/196 (42%), Positives = 119/196 (60%), Gaps = 5/196 (2%) Query: 361 NVQAAELLAEMAISSA--QRRMRAAKKVVRKKL-TSGPALPGKLADCTAQDLNRTELFLV 417 N + A+ + SA + R A+ + RK++ LPGKLA+C +D ++ELFLV Sbjct: 2 NPKDAKTIIGRMAESAIAREAARKARDLSRKQIGNQISTLPGKLANCQEKDPAKSELFLV 61 Query: 418 EGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG--IDPDSD 475 EGDSAGGSAKQ RDR+ QAI+PLKGKILN D++L S E+ + A+G ++ Sbjct: 62 EGDSAGGSAKQGRDRKIQAILPLKGKILNVERARFDKMLNSAEIGTLITALGVVLEDKEF 121 Query: 476 DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEV 535 DL++LRY KI I+ DAD DG HI TLL F ++ L++ G++Y+A PPLY++ G+ Sbjct: 122 DLTKLRYHKIIIMTDADVDGAHIRTLLLTFFFRYMPGLIEKGYLYIAQPPLYKVKRGQSD 181 Query: 536 YYALTEEEKEGVLEQL 551 Y E L+ + Sbjct: 182 TYLKDELALRNYLKSI 197 >UniRef50_B4YQA0 DNA gyrase subunit B (Fragment) n=1 Tax=Lactobacillus jensenii RepID=B4YQA0_9LACO Length = 258 Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 74/259 (28%), Positives = 120/259 (46%), Gaps = 5/259 (1%) Query: 128 VNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTH 186 V V RDG+ Y I F++G +L+ +GT GT VHF+PD F ++ F L Sbjct: 1 VTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGTIVHFYPDPDIFTETIVFDDKILKK 60 Query: 187 VLKAKAVLCPGVEITFKDEINNTEQR--WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAG 244 ++ A L G+++TF D+ N+ + + Y+ G+ +Y+A L + P Sbjct: 61 RIQELAFLNKGLKLTFTDKRKNSAETDVYHYEGGIKEYVAFLDEKEEKLFDTPVYVEGDY 120 Query: 245 DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR- 303 D V+ AL + G + ++ N I T +GG H G + L + ++ I Sbjct: 121 DGINVEVALQYTT-GYKTTMMTFANNIHTYEGGMHEAGFKTALTRVINDYARKAKIFKDS 179 Query: 304 GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQ 363 LS EDI + V+S+K +PQF GQTK +L + A V +AF +L +N Sbjct: 180 DTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFSEAFSKFLLENPS 239 Query: 364 AAELLAEMAISSAQRRMRA 382 + E + + R+ A Sbjct: 240 VGRKIVEKGQLAEKARIAA 258 >UniRef50_A7XYG8 GyrB (Fragment) n=6 Tax=Chlamydia trachomatis RepID=A7XYG8_CHLTR Length = 393 Score = 244 bits (622), Expect = 1e-62, Method: Composition-based stats. Identities = 83/219 (37%), Positives = 124/219 (56%), Gaps = 13/219 (5%) Query: 393 SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSS 452 LPGKL DC +D + E+++VEGDSAGGSAKQ RDR +QAI+P++GKILN + Sbjct: 1 DSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARL 60 Query: 453 DEVLASQEVHDISVAIGIDP--DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHF 510 +V +QE+ I A+G D+ +LS+LRY +I I+ DAD DG HI TLL F +H Sbjct: 61 QKVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHM 120 Query: 511 RALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKP----NVQRFKGL 566 AL+++ VY+A PPLYR+ K+ Y L+E+E +G L L K+ + ++ +G Sbjct: 121 SALIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRG- 179 Query: 567 GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDM 605 + ET ++ + ++ +DM Sbjct: 180 ------EALETFVNLILEVESFIVSLEKKAIPFSEFLDM 212 Score = 72.7 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 8/96 (8%) Query: 538 ALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQ 597 T +E L+ L RK +QR+KGLGEMN QL +TT++P R LV++++ +D Sbjct: 303 CYTLKEVIDYLKGLGRKG--IEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSL--KDAV 358 Query: 598 RTDAMMDMLLAKKRSEDRRNWLQEKGD---MAEIEV 630 D + ML+ + RR +++ M +++ Sbjct: 359 EADHIFTMLMG-EEVPPRREFIKSHALSIRMNNLDI 393 >UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea RepID=Q27537_CAEEL Length = 842 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 107/249 (42%), Gaps = 14/249 (5%) Query: 381 RAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAI 437 + K KL P L D ++ + L L EGDSA A R+ + Sbjct: 27 QKCPKRKTSKLKGIPKLED-ANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVGRDKYGV 85 Query: 438 MPLKGKILNTWEVSSDEVLASQEVHDISVAIGID-----PDSDDLSQLRYGKICILADAD 492 P + K+LN +++ +++ S EV+ I +G+ DD LRYGK+ I+A+ D Sbjct: 86 FPFRRKLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKLLIMANHD 145 Query: 493 SDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK 552 SDG LL F + + AL K V + P+ + GKE + E Sbjct: 146 SDGSQFKGLLLNFFHRFWPALFKRDFVEDFITPIAKATEGKEEVSFYSLPEYSEWRMNTD 205 Query: 553 RKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRS 612 K ++ + GLG + + ++ D R ++ + DD D ++M +KK+ Sbjct: 206 NWKS-YTIKYYNGLGTLTSKEAKKCFSDM-VRHRIRFKYNGADD---DKAVNMAFSKKKI 260 Query: 613 EDRRNWLQE 621 E R ++L + Sbjct: 261 EARTDYLMK 269 >UniRef50_A9CRV4 DNA gyrase subunit B (Fragment) n=2 Tax=Bradyrhizobium RepID=A9CRV4_9BRAD Length = 272 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 82/168 (48%), Positives = 108/168 (64%), Gaps = 1/168 (0%) Query: 37 QEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHA 96 EV+DN++DEALAGHA RV V L+AD S+ V DDGRG+PVDIH EGV A E+I+ +LHA Sbjct: 1 YEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIHKGEGVSAAEVIMTQLHA 60 Query: 97 GGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC 156 GGKF +Y+ SGGLHGVG+SVVNALS ++ + + D + + I F +G+ V L+VVG Sbjct: 61 GGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWGDDKEHYIEFAHGDAVAPLKVVGDA 120 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 204 + GT V F F + + + L H L+ A L GV I D Sbjct: 121 PGKR-GTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVHIVLSD 167 >UniRef50_Q2SFQ7 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SFQ7_HAHCH Length = 325 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 94/356 (26%), Positives = 157/356 (44%), Gaps = 40/356 (11%) Query: 12 VLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVI 68 +L+ + VR+RPGMY NH+ E++ N VD LAG A + V + ++ + VI Sbjct: 1 MLSFKDAVRKRPGMYFGDIDHNAVNHVIYELVANVVDLFLAGRATTLKVDV-SECEIIVI 59 Query: 69 DDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQ--FSGGLHGVGISVVNALSKRV 126 DDG G P + + VE L H + GG G+G++ VNA+S+++ Sbjct: 60 DDGPGFPFPV-EDSAHNLVERYLTHHHDKPTADDHAPHIHVLGG--GLGLAAVNAVSEKL 116 Query: 127 EVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTH 186 + + F G+ + L+ G +G+S+ F D + F + +L Sbjct: 117 TIESSNGAWRWRQVFGKGDVLAPLESFRYDGP--SGSSIKFTLDPSVFHNRLPDFFQLRK 174 Query: 187 VLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDT 246 + A L G+ + F E + + GL + LA + P P + F G T Sbjct: 175 AMFELAHLYSGLIVEFDGER------YVSKQGLME-LAYLMWSGPKWAFNPKMFRFKGQT 227 Query: 247 EAVDWALLWLPEGGE-LLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGV 305 E V + + + +GG +S+VN T + G HVNGLRQ L Y P Sbjct: 228 EDVGFEVAAIGDGGSPPCYKSWVNGCETEEHGAHVNGLRQAL--------NYAGWAP--- 276 Query: 306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 DI ++S+ M DP+FAG K R +R+ + ++ + D ++ +++ Sbjct: 277 -----DI-----ALISIVMHDPKFAGPVKSRFCNRRVKSLIAEALADPLKMFKSKS 322 >UniRef50_Q1CZR7 DNA gyrase, B subunit, truncated n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CZR7_MYXXD Length = 361 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 145/366 (39%), Gaps = 30/366 (8%) Query: 16 LEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGR 72 +E VR+RPGMY +HL ++D + +EA G + V + + D S+ + R Sbjct: 11 VENVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSR 70 Query: 73 GMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR 132 + + L R+ G F + G + + V ALS R +V++ Sbjct: 71 TVTAEN------------LVRVATGAGFLGRPPGDGWGWDSM-LVVSLALSSRYQVDIWA 117 Query: 133 DGQVYNIAFENGEKVQDLQVVGTCGK----RNTGTSVHFWPDETFFDSPRFSVSRLTHVL 188 DG+ + + E+G + V G VHF PD T F+ F +RL+ Sbjct: 118 DGRQWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFVPDATIFEVLAFDRARLSRRC 177 Query: 189 KAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEA 248 A L PG+ ++F D W G+ + P L +P + +F D Sbjct: 178 NELAALAPGLRVSFADLQRGERTLWHLPGGVAQWAHVLTEARPQLHPEPVVFDFTWDGLR 237 Query: 249 VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF-CEYRNILPRGVKL 307 V AL W + + S+ N + T++ G HV G+ Q L A+ + E R P Sbjct: 238 VQCALQWCEDE-DSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFP----- 291 Query: 308 SAEDIWDRCAYVLSVKMQ--DPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAA 365 + +++V FAG TKE L+ + ++ FI L ++ Sbjct: 292 -WARVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTP 350 Query: 366 ELLAEM 371 LLA Sbjct: 351 ALLARR 356 >UniRef50_Q00942 DNA topoisomerase 2 n=7 Tax=African swine fever virus RepID=TOP2_ASFB7 Length = 1192 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 104/637 (16%), Positives = 207/637 (32%), Gaps = 85/637 (13%) Query: 34 HLGQEVIDNSVDEALAGHAKRVDVI---LHADQSL-EVIDDGRGMPVDIHP------EEG 83 + E+I N+ D A H+K V + D+ + +DG G+P+ H + Sbjct: 56 KIFDELIVNATDHERACHSKTKKVTYIKISFDKGVFSCENDGPGIPIAKHEQASLIAKRD 115 Query: 84 VPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFEN 143 V E+ C AG + GG +GVG+ + S+ + Q Y Sbjct: 116 VYVPEVASCFFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQKYVQQINQ 175 Query: 144 GEKVQDLQVVGTCGKRNTGTSVHFWP---------DETFFDSPRFSVSRLTHVLKAKAVL 194 + + + R T + P + + S + A + Sbjct: 176 RLDIIEPPTITPS--REMFTRIELMPVYQELGYAEPLSETEQADLSAWIYLRACQCAAYV 233 Query: 195 CPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALL 254 G I + D+ T Y + + A + Sbjct: 234 GKGTTIYYNDKPCRTGSVMALAKM---YTLLSAPNSTIHTATIKADAKPYSLHPLQVAAV 290 Query: 255 WLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR---NILPRGVKLSAED 311 P+ + S +N + ++ G HV L+ + E + I + K + D Sbjct: 291 VSPKFKKFEHVSIINGVNCVK-GEHVTFLK----KTINEMVIKKFQQTIKDKNRKTTLRD 345 Query: 312 IWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEM 371 V+ + ++ GQ K+ LS + + +F+ + ++ Sbjct: 346 SCSNIFVVIVGSIPGIEWTGQRKDELSIAENVFKTHYSIPSSFLT------SMTRSIVDI 399 Query: 372 AISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR- 430 + S ++ + V K + + + L EGDSA + Sbjct: 400 LLQSISKKDNHKQVDVDK--------YTRARNAGGKRAQDCMLLAAEGDSALSLLRTGLT 451 Query: 431 ---------DREYQAIMPLKGKILNTWEV--------------SSDEVLASQEVHDISVA 467 ++ ++ L G I+N + ++++ ++ + I Sbjct: 452 LGKSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTNNKVLQGIVQV 511 Query: 468 IGIDPD-----SDDLSQLRYGKICILADADSDG-LHIATLLCALFVKHFRALVKHGHVYV 521 +G+D + ++ ++LRYG I D D DG I LL A F + L+ HG V Sbjct: 512 LGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWPQLIIHGFVKR 571 Query: 522 ALPPLYRIDLGKEV--YYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTL 579 L PL R+ + E+E + ++ + V+ +KGL + +++ Sbjct: 572 LLTPLIRVYEKGKTMPVEFYYEQEFDAWAKK-QTSLVNHTVKYYKGLAAHDTHEVKSMF- 629 Query: 580 DPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRR 616 + + D + + + SE R+ Sbjct: 630 ----KHFDNMVYTFTLDDSAKELFHIYFGGE-SELRK 661 >UniRef50_UPI00016C4A69 DNA gyrase subunit B n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4A69 Length = 294 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 121/316 (38%), Gaps = 34/316 (10%) Query: 1 MTQTYN-ADAIE----VLTGLEPVRRRPGMYTDTTRPNHLGQ---EVIDNSVDEALAGHA 52 M YN +D IE V +E +R RP M+ T L Q E++++++ A Sbjct: 1 MKCGYNTSDPIEADLPVEAPMEAIRLRPRMFLGGTGSRGLHQLLFELVNDALGPLSGDPA 60 Query: 53 KRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH 112 V V L AD +E+ DD P V AV + LHA Sbjct: 61 GVVRVALDADGFVEISDD-------CSPPLNVEAVFSRMSGLHAADSR------------ 101 Query: 113 GVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDET 172 SV ALS+ + RR G V F G+ + Q G + G +V F PD Sbjct: 102 ----SVACALSEELTARARRSGAVPQCTFRRGQLHAETQFGGP--PDDCGLTVRFRPDPA 155 Query: 173 FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPT 232 F + RF + + L+ A L GV I F DE + TE + Y DG+ DY+ Sbjct: 156 IFGAARFDPDIIRNRLQQCAFLNSGVRIAFADESSGTEDVFEYPDGIADYVKWLNTNRTP 215 Query: 233 LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 + + + + L W + + L S+ N T GGTH G+R + Sbjct: 216 VHAEVIAFDGEAGGVRYEVGLQWCADA-DALPVSFANGYCTRLGGTHTTGVRAAVKTWCA 274 Query: 293 EFCEYRNILPRGVKLS 308 C + ++ Sbjct: 275 RCCVRSLRAKKSSAMT 290 >UniRef50_C5Z2Y6 Putative uncharacterized protein Sb10g016438 (Fragment) n=3 Tax=Sorghum bicolor RepID=C5Z2Y6_SORBI Length = 396 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 74/361 (20%), Positives = 134/361 (37%), Gaps = 80/361 (22%) Query: 267 YVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQD 326 +VN + ++GG + + + E + + ED+ ++ Sbjct: 3 FVNGVV-IEGGVQFD----TITRHVEEHLKSSIKRKMKNVQNIEDVKSHLWAFINADY-- 55 Query: 327 PQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKV 386 P F G+ Q S + K+ F L + + A + I + Q + + A Sbjct: 56 PFFYGE-------PQLQVAHSFIFKEIFRCALKETLAWALKEEDENIEANQTKFQDA--- 105 Query: 387 VRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN 446 D + L EGDSA A + R+Y ++ LKGK+LN Sbjct: 106 ---------------TRAGGVDSQKCTLIFTEGDSAKDLALGSVHRDYFGVLALKGKLLN 150 Query: 447 TWEVSSDEVLASQEVHDISVAIGIDP-----DSDDLSQLRYGKICILADADSDGLHIATL 501 + S ++L ++E++++ IG+D D DL LRYGK+ ++ D D DG HI L Sbjct: 151 VRDASLKKILDNEEINNMRKIIGLDYKKHYNDEKDLKDLRYGKVMVMTDQDPDGFHIKGL 210 Query: 502 LCALFVKHFRALVK---HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKP 558 + LF + +L+K + + PL Sbjct: 211 IINLFHVFWPSLLKIKSKSFLCDLVTPLV------------------------------- 239 Query: 559 NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 KGLG + + D + + + +++EDD + +K + E+R+ W Sbjct: 240 -----KGLGTRTLKEGMQYFKDIDIHQKYFVWVNEEDD----KAIKTAFSKHKVEERKEW 290 Query: 619 L 619 + Sbjct: 291 I 291 >UniRef50_B1PJM5 DNA gyrase subunit B (Fragment) n=1 Tax=Micromonospora tulbaghiae RepID=B1PJM5_9ACTO Length = 215 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 61/219 (27%), Positives = 96/219 (43%), Gaps = 11/219 (5%) Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS R+ V + +DG V+ G + + TG++V FWPD FF++ Sbjct: 1 VVNALSPRMGVEIHKDGFVWGQ---RGNHSKPRPLEKGEETDRTGSAVCFWPDPDFFETV 57 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNT-------EQRWCYQDGLNDYLAEAVNGL 230 F + L+ A L G+ I DE E + Y+ G+ D+ Sbjct: 58 DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIGDFGRRLNASK 117 Query: 231 PTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 + + +V+ A+ GE + ++ N I T +GGTH G R L Sbjct: 118 SPIHKTGGEFGAEETGMSVEIAMQGNESYGESVY-TFANNIDTHEGGTHEEGFRAALTSV 176 Query: 291 MREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQF 329 + + + +L +LS EDI + A ++SVK+ DPQF Sbjct: 177 VNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQF 215 >UniRef50_UPI0001C4799C UPI0001C4799C related cluster n=1 Tax=unknown RepID=UPI0001C4799C Length = 184 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 79/209 (37%), Positives = 117/209 (55%), Gaps = 32/209 (15%) Query: 15 GLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDG 71 GLE VR+RPGMY +T +HL E++DNS+DEALAG+A +++V++ D ++V D+G Sbjct: 1 GLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNG 60 Query: 72 RGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR 131 RG+PVDI + G PAVE+IL SVVNALS+ +EV V Sbjct: 61 RGIPVDIQEKMGRPAVEVILT-----------------------SSVVNALSQDLEVYVH 97 Query: 132 RDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKA 190 R+ +Y+ A++ G DL+ VGT K TGT + F D F ++ ++ L ++ Sbjct: 98 RNETIYHQAYKKGVPQFDLKEVGTTDK--TGTVIRFKADGEIFTETTVYNYETLQQRIRE 155 Query: 191 KAVLCPGVEITFKDEI---NNTEQRWCYQ 216 A L G++IT +DE N E + Y+ Sbjct: 156 LAFLNKGIQITLRDERDEENVREDSYHYE 184 >UniRef50_D2J2Q7 DNA gyrase subunit B (Fragment) n=7 Tax=Corynebacterineae RepID=D2J2Q7_9ACTO Length = 249 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 101/253 (39%), Gaps = 43/253 (16%) Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPRFS 180 LS +VE+ ++ DG + + + R TGT+V FWPD F ++ RF+ Sbjct: 1 LSTKVELEIQNDGFNWEQTY---TYATPGALEKGTPTRKTGTTVRFWPDPEIFTETTRFN 57 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEIN--------------------------------- 207 + L+ A L G+ IT D+ Sbjct: 58 AETVARRLQEMAFLNKGLTITLTDQRPQAIEPPGDADGDEESGTTEAAEVVKSEEEKAAA 117 Query: 208 ---NTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLT 264 + + Y DGL DY+ ++ G V+ A+ W E + Sbjct: 118 AAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVVGFTGQGTGHEVEVAMQWNAGYSESVH 177 Query: 265 ESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNIL--PRGVKLSAEDIWDRCAYVLSV 322 ++ N I T +GGTH G R L + ++ + ++ + +LS +DI + A V+SV Sbjct: 178 -TFANTINTHEGGTHEEGFRAALTLTVNKYAVDKKLIKDKKEDRLSGDDIREGLAAVISV 236 Query: 323 KMQDPQFAGQTKE 335 K+ DPQF GQTK Sbjct: 237 KVGDPQFEGQTKT 249 >UniRef50_C0F8C8 DNA gyrase, B subunit (Fragment) n=1 Tax=Wolbachia endosymbiont of Muscidifurax uniraptor RepID=C0F8C8_9RICK Length = 288 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 54/130 (41%), Positives = 80/130 (61%), Gaps = 2/130 (1%) Query: 421 SAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS--DDLS 478 SAGG+AKQ R+R+ QA++ L+GKILN VS D + +S E+ + AIG S D+ Sbjct: 1 SAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSEHFDIE 60 Query: 479 QLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYA 538 + RY KI I+ DAD DG HI TL+ F +H R +++ G++Y+A PPLY++ + Y Sbjct: 61 KARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKVTKNAKDTYI 120 Query: 539 LTEEEKEGVL 548 +E E + Sbjct: 121 KDDETFEEYI 130 >UniRef50_D1AIT2 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIT2_SEBTE Length = 226 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 111/230 (48%), Gaps = 10/230 (4%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHL---GQEVIDNSVDEALAGHAKRVDV 57 M++ ++A +I VL +E +R++P M+ + L E+IDN V+EAL G + V Sbjct: 1 MSEIFDAKSIAVLGIMEGIRKKPEMFIGSVSAEGLCNLVWEIIDNCVNEALEGFCNTIKV 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 L + +EV D+GRG+PVD + + G +E+IL + G+ + Y+ S + G+ Sbjct: 61 RLLKNNIIEVSDNGRGLPVDFYEKAGKSKLEVILTGKYIRGELTGGIYKLSRKKYKGGLV 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VN LS+ +E V +DG+V+ + G D++ G + GT + F D F Sbjct: 121 SVNGLSETLEAVVIKDGKVWYQKYHKGVPSGDIKKTGEKSEYIHGTVIRFRADREIFGEL 180 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEIN---NTEQRWCYQDGLNDYLA 224 + L LK G+++ DE N + + + + ++L Sbjct: 181 EYDYEILLAKLKEI----RGIKVILCDERNEAAGKTESFYFNGEIREFLK 226 >UniRef50_C1ZHM4 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHM4_PLALI Length = 325 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 76/354 (21%), Positives = 141/354 (39%), Gaps = 40/354 (11%) Query: 13 LTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVID 69 T LE +R+RP MY +T +HL E++DN++D+ LA A V+V + LE D Sbjct: 3 FTDLEAIRKRPAMYVGSTDVNGLHHLFNELLDNAIDQYLANQATYVEVHTSGE-ILEFTD 61 Query: 70 DGRGMPVDIHPEEGVPAVELILCR--LHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVE 127 DG G+P + + L L ++ + G G G+ ++ AL++ E Sbjct: 62 DGPGLPFEKPGPHSGSLADYYLTHIRLDTPTADNHTPHIHLSGW-GCGLRIITALTETCE 120 Query: 128 VNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHV 187 V R+ + +F G +VG +R GT+ D F + R+ Sbjct: 121 VTSSRNHLAWKQSFSRGISNGPPHIVGHTSER--GTTFRLSIDRDLFS-GDWCQHRMNQR 177 Query: 188 LKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL-PEKPFIGNFAGDT 246 L A L PG+ + + + GL D A + + P++ + N + Sbjct: 178 LIEAAHLFPGLLV------KSQGLHFKTLRGLADLAANVAHEKNSPNPDRIWWFNAVFED 231 Query: 247 EAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVK 306 + A+ E +S+ N T++ GTH+ ++ E N+ P Sbjct: 232 FHLQAAIAGTDSETE--WKSFANGNLTIENGTHLTA--------LQRVIEACNLRPA--- 278 Query: 307 LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ 360 A + V + +P+F+G T+ +L + + + + + ++ + Sbjct: 279 ----------AAFIHVIISNPRFSGPTRSKLDVPEIISPIYEALYPSLKSFITE 322 >UniRef50_Q6Y3A9 Gyrase B (Fragment) n=1 Tax=Pelobacter acidigallici RepID=Q6Y3A9_PELAC Length = 277 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 5/197 (2%) Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 +SVVNALSK +E+ +R D +++ G V L G KR GT V F P+E F+ Sbjct: 1 VSVVNALSKWLELEIRGDEKLFPPILPGGGXVAPLAETGATRKR--GTKVTFMPEEEIFE 58 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKD-EINNTEQRWCYQDGLNDYLAEAVNGLPTLP 234 + FS L+ L+ A L GV I D ++N + Y+ G+N ++ + Sbjct: 59 TTEFSFDVLSQRLRELAFLNAGVRIGISDMRVDNKSHEFYYEGGINSFVEYLNRNKIAVH 118 Query: 235 EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 KP + ++ + + S+ N I T +GGTH+ G + L M + Sbjct: 119 PKPIYFRGEKGGVETEVSMQYNDS-FDEKIFSFANNINTHEGGTHLVGFKAALTRTMNAY 177 Query: 295 CEYRNILPR-GVKLSAE 310 N+L + V +S + Sbjct: 178 AAANNLLKKEKVSISGD 194 >UniRef50_A7C3L4 Topoisomerase B subunit n=1 Tax=Beggiatoa sp. PS RepID=A7C3L4_9GAMM Length = 337 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 77/353 (21%), Positives = 138/353 (39%), Gaps = 36/353 (10%) Query: 13 LTGLEPVRRRPGMYTD---TTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVID 69 L + VR+RPGMY + N + E++ N+VD LAG AK+ I + ++ + D Sbjct: 11 LELRQAVRKRPGMYFGDIESGGANTVVYEIVANAVDIFLAGLAKK-INIEVNNNNIIISD 69 Query: 70 DGRGMPV--DIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVE 127 DG G P + + VE L H N G+G++V+NA SK++ Sbjct: 70 DGPGFPFFKASPQDTSINLVEYYLTNFHNSPTADNHAPHIHILGRGLGLAVLNAASKKLA 129 Query: 128 VNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHV 187 + +++ F G + G TG+ V D FD+ + L + Sbjct: 130 IESSDGEKLWTQNFGEGMVLSP--ATHESGNFPTGSKVSITLDPMVFDNHGPNSFELRKI 187 Query: 188 LKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTE 247 L PG+ I F+ ++ + +GL D + + P + F + Sbjct: 188 FFEVVHLYPGLSIEFE------KECFYSNNGLVDLGYILLKKSASYMGMPKMFRFHYQKK 241 Query: 248 AVDWALLWLPEGGE-LLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVK 306 +++ + L + E S+VN +++ G+H GL L + ++ Sbjct: 242 GIEFQVAALGDSKEGTEFRSWVNGCASVENGSHAKGLSSAL--RLNKW------------ 287 Query: 307 LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLN 359 E ++ V M DP+FAG ++ L + + + +LN Sbjct: 288 -KPE------IALIHVIMHDPKFAGPCRDALQMPEVLKVIEEKLTPEIKAFLN 333 >UniRef50_UPI0001788AA3 transcriptional regulator, ArsR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788AA3 Length = 372 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 11/205 (5%) Query: 6 NADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHAD 62 +A L E R GMY + + L V++NS+ E +G+ ++ + LH D Sbjct: 176 DASDY--LEMSE-TRNNAGMYFGPSHGFDIHQLLWAVVENSILEHTSGYGDQIGIFLHED 232 Query: 63 QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNAL 122 S+ V D+GRG+PV P VP V+ IL +H ++ ++ G G+ I+VVNAL Sbjct: 233 GSVTVTDNGRGIPVQALPNSDVPVVQSILTDVHR--FNNSAHFLVPGAEKGISIAVVNAL 290 Query: 123 SKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVS 182 SK++ V +RRDG +Y + +G L VG + TGTSV F P+ F S F Sbjct: 291 SKQLSVEIRRDGNIYRQEYRHGIPQTGLLTVGLTQE--TGTSVTFKPETELFSSA-FEFD 347 Query: 183 RLTHVLKAKAVLCPGVEITFKDEIN 207 R+ A A P + +T ++ Sbjct: 348 RILEHKDAIAADYPALALTIRNTAE 372 >UniRef50_A6N6C7 DNA gyrase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=A6N6C7_9BACT Length = 353 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 67/305 (21%), Positives = 106/305 (34%), Gaps = 63/305 (20%) Query: 205 EINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLT 264 E R + +YL L F D V+ A+ W E + Sbjct: 105 ERRIDRAREQFTRTCPEYLHRT---RTVLHPTVFHSVGEKDGITVEVAMQW-KESYQENV 160 Query: 265 ESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVK 323 + N IP GGTH+ LR + + F E + + V+ + ED+ + VLSVK Sbjct: 161 LCFTNNIPQRDGGTHLTALRAAMPRTLNHFIEENELARKAKVETTGEDMREGRTCVLSVK 220 Query: 324 MQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA 383 + P+F+ QTKE+L S + V VV D +L + A ++ I +A+ R A Sbjct: 221 VPPPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAARAREAAR 280 Query: 384 K------KVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAI 437 + + + G K ++ + Sbjct: 281 RGRSLPVRRRGETSLRGSLRSPKSKVAPCRE---------------------------GL 313 Query: 438 MPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLH 497 +PL+ S+ V VA + S + ++DAD DG H Sbjct: 314 LPLR---------STQRV---------CVAHWLRQGSR-------HAVHDMSDADVDGSH 348 Query: 498 IATLL 502 I TLL Sbjct: 349 IRTLL 353 >UniRef50_Q44273 DNA gyrase subunit B (Fragments) n=5 Tax=Acinetobacter RepID=GYRB_ACIGA Length = 216 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 2/128 (1%) Query: 104 NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGT 163 +Y+ SGGLHGVG+SVVNALS ++E+ + R G ++ +++G+ V L+V+G TGT Sbjct: 1 SYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKVIG--DIETTGT 58 Query: 164 SVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL 223 +V FWP F F+V L L+ + L GV I +DE E + + GL++ Sbjct: 59 TVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVALEHIFDLEVGLSEKS 118 Query: 224 AEAVNGLP 231 A + GLP Sbjct: 119 ALDIAGLP 126 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 66/104 (63%), Gaps = 2/104 (1%) Query: 385 KVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKI 444 + K LPGKLADC +D +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKI Sbjct: 113 GLSEKSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKI 172 Query: 445 LNTWEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKIC 486 LN D++++SQEV + A+G + + +LRY KI Sbjct: 173 LNVERARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKII 216 >UniRef50_Q7UUI4 DNA gyrase subunit B n=1 Tax=Rhodopirellula baltica RepID=Q7UUI4_RHOBA Length = 243 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 20/209 (9%) Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV------- 461 ++TEL +VEGDSA S Q RD Q+++ L+GK +N + S L ++ + Sbjct: 28 PDQTELVIVEGDSAAKSVNQVRDTTRQSVLALQGKPMNVAKASRSVALRNEVLIRFASTL 87 Query: 462 --HDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHV 519 H +S + + RY ++ +L D D+DG+H L+ ++ L++ V Sbjct: 88 LDHKLSASEDWIEALRKADRCRYARLVVLMDPDADGIHCGVLVLGFLLRFAPQLLQERRV 147 Query: 520 YVALPP--LYRID------LGKEVYYALTEEEKEGVLEQLK-RKKGKPNVQRF--KGLGE 568 V PP L+RI G ++ + + K + G + +RF +GLG Sbjct: 148 CVVRPPMFLFRIRGTTADQAGVQIRTLVASNPDHARRMEAKLTEAGMSDYERFRHRGLGS 207 Query: 569 MNPMQLRETTLDPNTRRLVQLTIDDEDDQ 597 + P LR +DP++R +++ ++ D Sbjct: 208 IPPDVLRTCCVDPSSRAADEMSREEAADA 236 >UniRef50_C0SNC2 DNA gyrase subunit B (Fragment) n=87 Tax=Lactobacillales RepID=C0SNC2_9STRE Length = 153 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 7/156 (4%) Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPRFS 180 LS +++V V ++GQVY + G+ V DL+V+G + TGT+VHF PD F ++ F Sbjct: 1 LSTQLDVRVHKNGQVYFQEYRRGQVVDDLKVIGETDR--TGTTVHFTPDPEIFTETSEFD 58 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTE---QRWCYQDGLNDYLAEAVNGLPTLPEKP 237 ++L ++ A L G+ I+ D+ + E + + Y+ G+ Y+ + + +P Sbjct: 59 FAKLAKRVQELAFLNKGLRISITDKRDGNEANDKEYHYEGGIVSYVEFLNDTKEVIFNQP 118 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPT 273 + + AV+ A+ + E + S+ N I T Sbjct: 119 IYTDGEMEGIAVEVAMQYTTGFHENVM-SFANNIHT 153 >UniRef50_A6G3Y8 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3Y8_9DELT Length = 272 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 134/305 (43%), Gaps = 35/305 (11%) Query: 47 ALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQ 106 L+G R+ V L D V+DDG G+ P E + +E + G ++ + Sbjct: 2 HLSGRCSRLYVSLTHDHF-CVVDDGPGL----EPSEVLDQLETHHKKRTRQGDRAHAHVI 56 Query: 107 FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVH 166 + G+G++++NAL++R+E +RR G+V FE V + ++VG C ++GT++ Sbjct: 57 GT----GMGLAMINALARRLEFELRRAGEVRRWVFEGTVLVSENELVGACD--DSGTTLR 110 Query: 167 FWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEA 226 WPD + P S + L+ VL+ LCP + + + + GL ++ Sbjct: 111 VWPDASLMREPLPSRAELSAVLEKVHWLCPALRVELDGRR------FSGEAGLAAWIRRQ 164 Query: 227 VNGLPTLPEKP-FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 285 + E + G + WA WL E ++VNL T + G+H++ L + Sbjct: 165 PEWDGSPVETLELVDGARGARVGLAWA--WLDEPCVARQAAFVNLRETPR-GSHMDALLE 221 Query: 286 GLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 345 GL +S R ++SV +++P++ T+E L+ + A+ Sbjct: 222 GLAA--------------RYGVSPAMARRRVLALVSVVLEEPRYDSPTREVLAQPELGAW 267 Query: 346 VSGVV 350 + + Sbjct: 268 IEASL 272 >UniRef50_C7UEA1 Predicted protein n=22 Tax=Enterococcus faecalis RepID=C7UEA1_ENTFA Length = 342 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 67/354 (18%), Positives = 136/354 (38%), Gaps = 34/354 (9%) Query: 14 TGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRG 73 +E +++RP + TT L ++ +++ L + + Sbjct: 14 EFIERIQKRPEAFIGTTGLVGLEN-LLVQTINGLLEFF---------------IEKNQGK 57 Query: 74 MPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD 133 + + + ++ V + + + +SV+ A SK+V +++ ++ Sbjct: 58 IAIQLSRQQISFQVSSTRPLVFEQKQVDLEPPFLY-------LSVLQAFSKQVGISIDQE 110 Query: 134 GQVYNIAFENGEKVQDLQV-VGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKA 192 Q + G+ + L + + +R V FWPD F + S R+ + A Sbjct: 111 KQRTIFIYHQGQLKKRLLLPIEETQERI---EVLFWPDTQIFGTESLSYMRVLQQCQQIA 167 Query: 193 VLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWA 252 +L PG++I E + Y GL++YL E N L K A TE Sbjct: 168 MLNPGLKILLTQEEEQKNLCY-YPKGLSNYLFEKDN---PLTRKAAPIIQAKQTELALVQ 223 Query: 253 LLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDI 312 + + +++VN GGTH G G++ A +F E ++ + ++A+ Sbjct: 224 FILSKNHAPQVQKTFVNGHYPSLGGTHYEGFLDGVVAAFNQFLEEQHY---SLSVTADSF 280 Query: 313 WDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAE 366 +VL++ + P++ TK L + + V VV D + ++ + E Sbjct: 281 LAEFDFVLAITIPKPRYTDATKTILRNTELYEVVKEVVFDELQHYFQRHPKWLE 334 >UniRef50_UPI0001908742 DNA topoisomerase IV subunit B n=1 Tax=Rhizobium etli IE4771 RepID=UPI0001908742 Length = 200 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 53/104 (50%), Positives = 69/104 (66%), Gaps = 4/104 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y A +I VL GLEPVR RPGMY T +HL EVIDN++DEA+AGHA ++V Sbjct: 97 SDEYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVH 156 Query: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFS 101 L L V D+GRG+PV+ HP+ G +E+I+ +LHAGGKF Sbjct: 157 LDLQGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFD 200 >UniRef50_Q6Y3B0 Gyrase B (Fragment) n=1 Tax=Geobacter pelophilus RepID=Q6Y3B0_9DELT Length = 299 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 83/218 (38%), Gaps = 24/218 (11%) Query: 272 PTMQGGTHVNG-LRQGLLDAMREFCEYRNILPRGVKLSAEDIW-------------DRCA 317 GG H L+ L M + N+ + D+ + A Sbjct: 91 HQHPGGGHALHRLKGSLTRTMNTYATANNLFEKR---EGGDLRRRPEGGAHRGHFGEDLA 147 Query: 318 YVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQ 377 + L + + Q + + Sbjct: 148 AAVRGA------DQDQAGELGGERVRRDPDEREARHLSGRKPGHGQEDPGEIDRCGPGPR 201 Query: 378 -RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQA 436 + R A K LPGKLADC +D ELFLVEGDSAGGSAKQ RDR+YQA Sbjct: 202 GAQERRANSPAAKVRLEVGTLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQA 261 Query: 437 IMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS 474 I+PLKGKILN + D++LASQE+ + A+G Sbjct: 262 ILPLKGKILNVEKARFDKMLASQEIRTLISALGTSIGK 299 >UniRef50_C3RSA4 DNA gyrase subunit B (Fragment) n=3 Tax=Lactobacillales RepID=C3RSA4_9ENTE Length = 156 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 7/157 (4%) Query: 123 SKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC---GKRNTGTSVHFWPDETFF-DSPR 178 S+++EV V ++G+VY F+ G+ DL+V+G G GT VHF PD F ++ Sbjct: 1 SEKLEVKVFKNGKVYYQDFKRGKINADLKVIGETELHGTEVHGTEVHFVPDPEIFNETTE 60 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTE--QRWCYQDGLNDYLAEAVNGLPTLPEK 236 F+ +L ++ A L G+ I+ +D ++ Y+ G+ Y+ L + Sbjct: 61 FNFDKLATRIRELAFLNRGLHISIEDRRPEEPLFNQYHYEGGIKSYVEHLNANKEVLFPE 120 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPT 273 P V+ ++ + L ++ N I T Sbjct: 121 PIYLEGQQQDINVEVSIQYTDSFHTNLM-TFANNIHT 156 >UniRef50_Q9FYE9 DNA gyrase subunit B-like protein n=3 Tax=Arabidopsis thaliana RepID=Q9FYE9_ARATH Length = 257 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 80/189 (42%), Gaps = 3/189 (1%) Query: 198 VEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLP 257 + ++ + E N+ + + Y GL++++ L + + ++ AL W Sbjct: 21 ITVSLEMEDNDPNKEYLYAKGLSEFVTWLNADKKPLHD-VLGFRKEINGTTINIALQWCV 79 Query: 258 EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRC 316 +G Y N I TM GGT+++G++ + + E ++ + + + E + + Sbjct: 80 DGYSNKILGYANGIRTMDGGTYIDGVKASITRTLNSLVEKSKLVEDKDIIFTEEHVMEGL 139 Query: 317 AYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA 376 ++SV + P+F GQT +RL + V V++ + + E + + ++ Sbjct: 140 TCIVSVIVPKPEFEGQT-QRLGNPNVREIVDQSVQECLMESFELHPDVFESIMSKSYNAY 198 Query: 377 QRRMRAAKK 385 + + + Sbjct: 199 KTDLAVKRA 207 >UniRef50_A8V367 Gyrase B (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V367_9AQUI Length = 277 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 23/191 (12%) Query: 457 ASQEVHDISVAIGIDPD--------SDDLSQLRYGKICILADADSDGLHIATLLCALFVK 508 ++ EV I AIG D+S+LRY KI ++ADAD DG HI TLL LF + Sbjct: 1 SNDEVRSIINAIGTGIGLPTESDEEGFDISKLRYHKIILMADADVDGSHITTLLLTLFYR 60 Query: 509 HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGE 568 +F L+++G +Y+A PPLY++ G+ Y +EE ++ + + K L + Sbjct: 61 YFPQLIENGFLYIAQPPLYKLKKGRTNIYVKDDEELARIIIDFALDEIEVVD---KKLTK 117 Query: 569 MNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA----------KKRSEDRRNW 618 L + + L + I D + DA++ + L+ K+ + +N Sbjct: 118 SQLKNLVKKA--KEYKDLRESLIKRRDAKIIDALISLKLSEDDLLYEEKTKEIVDKLKNV 175 Query: 619 LQEKGDMAEIE 629 + E E + Sbjct: 176 ITEYEIYYEKD 186 >UniRef50_C1SL26 DNA gyrase subunit B n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SL26_9BACT Length = 322 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 13/172 (7%) Query: 464 ISVAIGIDPDSDD--LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYV 521 + A+G DD + +LRY KI I+ DAD DG HI+TL+ F ++ +++ G++Y+ Sbjct: 1 MITALGTGIGKDDFNIEKLRYHKIIIMTDADVDGAHISTLIMTFFFRYMTEIIERGYLYM 60 Query: 522 ALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKK---GKPNVQRFKGLGEM--NPMQLRE 576 A PPLY++ GK Y EE L R+K L E ++ Sbjct: 61 ASPPLYKVKKGKSERYIQNEETMVNYLLDQGLDGVDIAHVQPHRYKELLENLIKLNRMVT 120 Query: 577 TTLDP-NTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 +R+LV+L +D L K + +Q+ G + + Sbjct: 121 KFEKKGYSRKLVKLLASYDD-----LHFSKLEDKDFVDGLLAAMQKYGILDQ 167 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 6/105 (5%) Query: 527 YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 Y++++ E+ T E +EQ R K VQR+KGLGEMNP QL ETT+DP +R L Sbjct: 223 YKLNVDGEITNFETLTEFVSFVEQ--RGKKGLGVQRYKGLGEMNPEQLWETTVDPQSRTL 280 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 ++ I ED + + + +L+ RR +++ ++ +++ Sbjct: 281 YRVRI--EDAEMANELFSLLMG-DVVAPRREFIENNALNVRNLDI 322 >UniRef50_A0MYL3 DNA gyrase B (Fragment) n=14 Tax=Streptomyces RepID=A0MYL3_9ACTO Length = 138 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 23/139 (16%) Query: 111 LHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD 170 LHGVG+SVVNALS RV V V+ DG + ++ G L + TGTSV FW D Sbjct: 1 LHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKFGVPTAPLARNEATDE--TGTSVTFWAD 58 Query: 171 ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR------------------ 212 F++ +S L+ + A L G+ I DE + + Sbjct: 59 GGIFETTEYSFETLSRRFQEMAFLNKGLTIKLTDERESAKATAGADVAEVAEIAEAEQVR 118 Query: 213 ---WCYQDGLNDYLAEAVN 228 + Y+ G+ D++ + Sbjct: 119 TVSYHYEGGIVDFVKYLNS 137 >UniRef50_Q2B8E8 DNA gyrase, B subunit n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8E8_9BACI Length = 350 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 12/193 (6%) Query: 14 TGLEPVRRRPGMYTDTTR----PNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVID 69 + LE +R P T N L +I ++V E AG A R+++ LH+D S V D Sbjct: 165 SALEALREEPEKMDMKTEGDFDANILLFSLIHHAVQEHEAGFASRINIYLHSDGSATVSD 224 Query: 70 DGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVN 129 DGRG+PV + + ++ +L + + N + G+ ++ +NA S+++ V Sbjct: 225 DGRGIPVSLLEGTSMSRLQDVLTDVEKNYLEDSLNEKS-----GIPVAAINAFSEKLTVL 279 Query: 130 VRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLK 189 +++D +Y+ ++ G+ + + +G + TGTS+ F PD+ F S F+ ++L + Sbjct: 280 IKKDTMIYSQEYQYGKALTRVVPIGKTNE--TGTSITFLPDKKVFKSG-FNAAKLEGKIN 336 Query: 190 AKAVLCPGVEITF 202 L P + ++ Sbjct: 337 ELQGLHPDLLVSL 349 >UniRef50_A5M9T1 DNA gyrase subunit B n=2 Tax=Streptococcus pneumoniae RepID=A5M9T1_STRPN Length = 128 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 3/89 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Q Y+A I+VL GLE VR RPGMY +T +HL E++DNS+DEALAG A + V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAV 87 + D S+ V+DDGRG+PVDI ++ V + Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEKQAVLLL 98 >UniRef50_D2PP74 GCN5-related N-acetyltransferase n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PP74_9ACTO Length = 337 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 5/172 (2%) Query: 14 TGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRG 73 +E +R+ P HL EVI +DEA+ G +V V+LHAD S+ V D+GRG Sbjct: 154 EHVEQIRQDPA--YRAGGVLHLALEVIAYPLDEAVEGTTTQVRVVLHADGSIAVSDNGRG 211 Query: 74 MPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD 133 V + GVP V+ I+ + + GL G+SV ALS+ R Sbjct: 212 TAVRFD-DGGVPMVKPIMATRDLRFFADPDSPRLPDGLPRAGMSVPIALSEWAVHTNHRT 270 Query: 134 GQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLT 185 + +E+G L V +TGT++HF PD T F + L+ Sbjct: 271 EGSWTRRYEHGMPRGALTAVPADS--STGTTIHFRPDRTLFGEEGVTPEALS 320 >UniRef50_UPI0001698B4B DNA gyrase, B subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698B4B Length = 199 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 2/134 (1%) Query: 184 LTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFA 243 L L+ + L G I ++E + E + Y+ G+ ++ + +K F + Sbjct: 39 LAKRLRELSFLNSGARIILREESSGKEDVFEYKGGILAFVEHLNRNKTPIHKKVFHFSTD 98 Query: 244 GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR 303 + V+ AL W E + Y N IP GG+H+ G R L + ++ E +L + Sbjct: 99 KNDVGVEVALQWN-ESYQENIFCYTNNIPQRDGGSHLAGFRAALTRTLNQYIEKEGVLKK 157 Query: 304 -GVKLSAEDIWDRC 316 V S +D R Sbjct: 158 HKVNTSGDDAKGRL 171 >UniRef50_UPI00016B21F7 DNA gyrase subunit B n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21F7 Length = 114 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 3/84 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q+Y+ I+VL GLEPVR+RPGMY +T +HL +E+ DNS+DEA+AG+A +V+V L Sbjct: 31 QSYDGSQIQVLEGLEPVRKRPGMYIGSTGYDGVHHLIKEIADNSIDEAIAGYATKVEVTL 90 Query: 60 HADQSLEVIDDGRGMPVDIHPEEG 83 D + DDGRG+PVD HP+ G Sbjct: 91 LEDGGARISDDGRGIPVDKHPKTG 114 >UniRef50_A0BK45 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK45_PARTE Length = 221 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 56/155 (36%), Gaps = 31/155 (20%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---------------------------RPN 33 M++ D ++++ +E + RP Y + Sbjct: 1 MSKN-VEDVYKMVSQVEHILLRPDTYIGSVEISDQELWICEDSDQISFKFEEFSYCQGLY 59 Query: 34 HLGQEVIDNSVDEALAGH-AKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILC 92 + E++ N+ D R+ V + D S+ V + G G+P+ IH + + E+I Sbjct: 60 KIFDEILVNAADNYQRDKSTDRISVSIDND-SIMVENTGAGIPIQIHKQYNIYVPEMIFG 118 Query: 93 RLHAGGKFSNKNYQFSGGLHGVGISVVN-ALSKRV 126 RL + + + +GG +G G V S Sbjct: 119 RLLTSSNYDDSEQKVTGGRNGFGDKVSQTCFSSIF 153 >UniRef50_B1PL25 DNA gyrase subunit B (Fragment) n=79 Tax=Bacteria RepID=B1PL25_ECOLX Length = 67 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 39/67 (58%), Positives = 51/67 (76%) Query: 403 DCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVH 462 DC +D +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN + D++L+SQEV Sbjct: 1 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 60 Query: 463 DISVAIG 469 + A+G Sbjct: 61 TLITALG 67 >UniRef50_C7P9T7 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7P9T7_CHIPD Length = 352 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 70/373 (18%), Positives = 140/373 (37%), Gaps = 37/373 (9%) Query: 12 VLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHA--KRVDVILHADQSLEVID 69 L +E +R RP MY + + + ++ + + L V++ + D + V+ Sbjct: 6 SLPVIESIRNRPVMYLGSVNSYGIRR-LMKMLITDYLEDVTGLSTVEITFNPDSFVSVV- 63 Query: 70 DGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVN 129 GMPVD EL+ S KN++ +++ A+S+ V V Sbjct: 64 -LSGMPVD----------ELLHEVAFLQEISSGKNFKI---------ALLIAISRFVLVR 103 Query: 130 VRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLK 189 + +G++++I G ++ G V F +E F + + + +L+ Sbjct: 104 IVVNGEIHSITSHAGIYEVEMH---PADGEPNGIKVDFQLEEQIFKHNQVAYIPMNIMLQ 160 Query: 190 AKAVLCPGVEITFKDEINNTEQR-WCYQDGLNDYLAEAVNGLPTLPEK---PFIGNFAGD 245 A L PG++I D ++ + ++ G+++ + ++ P A + Sbjct: 161 QLAYLNPGLKIISVDNRGELQRNVFYFRTGISELFNDLLDKHDYGSMNAWLPIELKTAIN 220 Query: 246 TEAVDWALLWLPEGG---ELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP 302 L + S+ N T G+ V G+ +GL DA E E + Sbjct: 221 GYIFHVILRYHHIYTVYPAPYIRSFANNEATKGHGSLVEGVLKGLEDAFVEVGEKEGV-- 278 Query: 303 RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNV 362 +K++ + I +VK + + G++K++L V VK + +L N Sbjct: 279 -ELKVNKKRIGKMLVLFAAVKGEPLTYDGRSKDKLDMPGLKKDVRKFVKRGVLKYLESNS 337 Query: 363 QAAELLAEMAISS 375 + E I Sbjct: 338 GDRRRVLEKFIRK 350 >UniRef50_A9ZPQ0 DNA gyrase subunit B (Fragment) n=5 Tax=Corynebacterium RepID=A9ZPQ0_9CORY Length = 183 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 57/186 (30%), Gaps = 54/186 (29%) Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS RVE ++R+G+ + F+N +V R TGT + FW D F++ F Sbjct: 1 LSTRVEAEIKREGKHWYQNFQNAVPDD---LVEGGNARGTGTKIRFWADPEIFETTEFDY 57 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEI----------------------------------- 206 + L+ A L G+ I DE Sbjct: 58 DTIARRLQEMAFLNKGLTIELIDERVTQAQIELEEIAEAESGEARGDETSFDDIPDAGDT 117 Query: 207 ----------------NNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVD 250 + + Y DGL DY+ T+ G+ V+ Sbjct: 118 FNEEDDSTNVITADKKRRKKVTFHYPDGLTDYVKFLNKSKSTIHPTIVSFEAKGEEHEVE 177 Query: 251 WALLWL 256 AL W Sbjct: 178 VALQWS 183 >UniRef50_Q9K2S8 GyrB protein (Fragment) n=2 Tax=Mycoplasma hominis RepID=Q9K2S8_MYCHO Length = 103 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 1/103 (0%) Query: 125 RVEVNVRRDGQVYNIAFENG-EKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSR 183 EV V+RDG+++ F NG V+ L+V+G + TGT++ F PD T + F Sbjct: 1 EFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDYTIMEKENFDFDT 60 Query: 184 LTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEA 226 + K A L G++IT ++ N + +C++ GL DY+ E Sbjct: 61 IIDHSKQIAYLNKGLKITVENVEKNIIKVFCFEGGLIDYVKEL 103 >UniRef50_Q6E0M3 GyrB (Fragment) n=1 Tax=Bacillus thuringiensis RepID=Q6E0M3_BACTU Length = 116 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 107 FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVH 166 SGGLHG G + ++ V V R+G+++ +E G V DL+V+G TGT Sbjct: 1 VSGGLHGCGARLXCLXAQXSXVFVHREGKIHYQKYERGIPVADLKVIGDTD--QTGTITR 58 Query: 167 FWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR 212 F PD F ++ + L ++ A L +++T +D+ + +++ Sbjct: 59 FKPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKK 105 >UniRef50_Q9F8M6 DNA gyrase subunit B (Fragment) n=1 Tax=Carboxydothermus hydrogenoformans RepID=Q9F8M6_CARHY Length = 123 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 2/103 (1%) Query: 202 FKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGE 261 KDE N E+ + + G+ DYL L K D V+ AL + E Sbjct: 14 LKDERINKEEIFEHSGGIKDYLKYLNKNKEPLH-KIIYFEKEKDEVVVEVALQYCNSFSE 72 Query: 262 LLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRG 304 S+ N I T +GGTH G + L + ++ + N++ Sbjct: 73 -NILSFTNNINTTEGGTHEIGFKTALTRVINDYAKKYNLIKEN 114 >UniRef50_UPI0000382E10 COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382E10 Length = 122 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 44/80 (55%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+A AIEVL GLEPVRRRPGMY T +HL EVIDNS+DEA+AGHA +++ L Sbjct: 43 GYDASAIEVLEGLEPVRRRPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIELELE 102 Query: 61 ADQSLEVIDDGRGMPVDIHP 80 L V D G+P D HP Sbjct: 103 DTVCLVVTDIVLGIPFDPHP 122 >UniRef50_B9XLD1 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=bacterium Ellin514 RepID=B9XLD1_9BACT Length = 353 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 71/377 (18%), Positives = 129/377 (34%), Gaps = 52/377 (13%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRVDV 57 M Q Y++ I +T E VR+RPGMY P ++ + +I+ +D + + Sbjct: 1 MAQ-YDSSHIAKMTFKEGVRKRPGMYFGLNGPAAIPYMLRYIINGVLDTTPDTFTGPIRI 59 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 + S +I D + + P + + K Y S S Sbjct: 60 TI---NSGTIITDCPSLSAPLFPPAELEQWFKL--------GSDMKPYHQSY------AS 102 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS- 176 V A S + Q +E+ + + + + F P F + Sbjct: 103 FVAAASDLFTLESCDGTQ--RARYED-HDDAPITRILSPATSPPFLRITFRPFAPVFGTI 159 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL---AEAVNGLPTL 233 + +++ +L+ ++L G+ + + ++ E YQDGL ++L + P Sbjct: 160 TTAELCKISGMLRDFSLLQAGLATSNRADLLQHEIHHYYQDGLINFLFEADYLHHPHPPS 219 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL----- 288 P + V+ L + G ++VN T + GTH+ GL L Sbjct: 220 HPDPLSFKATENKMTVEGHLRFT-NGYTHQVRTWVNRQST-ESGTHLEGLGLALSGIFPN 277 Query: 289 -------DAMR-EFCEYRNILPRGVKLSAEDIWDR-CAYVLSVKMQDPQFAGQTKERLSS 339 A+ F YRN I L +++ +P F+G T+ LS+ Sbjct: 278 PSRDFRDMAINTNFANYRNKTK--------VIVPHAMIAALHLRLPEPHFSGATRYNLSN 329 Query: 340 RQCAAFVSGVVKDAFIL 356 + FV Sbjct: 330 PEARDFVHRAAAATLKQ 346 >UniRef50_Q23CP4 DNA topoisomerase 2 n=3 Tax=Tetrahymena thermophila RepID=Q23CP4_TETTH Length = 784 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 108/298 (36%), Gaps = 28/298 (9%) Query: 196 PGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG---------NFAGDT 246 G+ I +D I E + ++ ++Y +N K G F +T Sbjct: 101 KGIPIEKQDNIFIPELIFSHERTSSNYQNTNLNDPKLTGGKNGYGAKLTNVLSEYFEVET 160 Query: 247 EAVDWALLWLPEGGELL--------TESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 + + L G S+VN +P GGTHVN ++ + + Sbjct: 161 KYDNLIFKQLHYEGNTKHSQQLQKDIISFVNGLPQ-NGGTHVN-FINQIIKQ-DQLIKNL 217 Query: 299 NILPRG----VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 N+ + +K + + S+ + P + Q+K++L + + F + ++ Sbjct: 218 NVQDQDELEVMKQLGKQYRQNVFIIFSLLVHQPSYTSQSKDQLKTNKKDWFDTIELEKYI 277 Query: 355 ILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTEL 414 + Q+ EL E+ + ++++ K ++K + + L Sbjct: 278 QQQIQQSSLLQELKIEIQQQTKKQQVLKQKDQIKKMNINSVKKLQDAIKIRDR-RTECSL 336 Query: 415 FLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 EGDSA + ++ PLKGK++N + ++ ++ + + ++ Sbjct: 337 LCAEGDSAMSFIRSGLTEQQKQIYGRFPLKGKLMNVNSKTDRQIGENEILSQLQRSLN 394 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 72/205 (35%), Gaps = 45/205 (21%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPNHL-----------------------------GQ 37 + + + VR+ MY + +P + Sbjct: 2 QNQYKQMKFELHVRQCADMYIGSIQPEEIMTPIYSKNQENQITLEYKKVKIIPGLLTVIG 61 Query: 38 EVIDNSVD--EALAGHAKRVDVILHAD---QSLEVIDDGRGMPVDIHPEEGVPAVELILC 92 E++ N+ D K + + L D + + G+G+P++ ++ + ELI Sbjct: 62 EILTNARDVMFQQRKQKKGIQIYLDFDEIEGEIVLKTVGKGIPIE--KQDNIFIPELIFS 119 Query: 93 RLHAGGKFSNKN---YQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIA-FENGEK-- 146 + N N + +GG +G G + N LS+ EV + D ++ +E K Sbjct: 120 HERTSSNYQNTNLNDPKLTGGKNGYGAKLTNVLSEYFEVETKYDNLIFKQLHYEGNTKHS 179 Query: 147 ---VQDLQVVGTCGKRNTGTSVHFW 168 +D+ +N GT V+F Sbjct: 180 QQLQKDIISFVNGLPQNGGTHVNFI 204 >UniRef50_A4YWI0 DNA gyrase subunit B GyrB n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YWI0_BRASO Length = 118 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%) Query: 115 GISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC----GKRNTGTSVHFWPD 170 G+ VVNALS+ ++V V RDG+ + + F G L++ G G GT + F PD Sbjct: 12 GLFVVNALSEWLQVRVWRDGKEHVMRFGRGRSEAPLRITGDAGIVDGAPRRGTEITFCPD 71 Query: 171 ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRW 213 F + F +R+ L+ V GV +T D+ + + Sbjct: 72 ARVFTTVGFDEARIEQSLRRMPVFKVGVTVTLSDQRSAESKTV 114 >UniRef50_Q401L8 DNA gyrase subunit B (Fragment) n=1 Tax=Mycobacterium kansasii RepID=Q401L8_MYCKA Length = 109 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS R+EV ++RDG ++ +E E + Q + TGT+V FW D F++ + Sbjct: 1 LSTRLEVEIKRDGYEWSQVYEKSEPMGLKQ---GAPTKKTGTTVRFWADPNVFETTEYDF 57 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEI 206 + L+ A L G+ I D+ Sbjct: 58 ETVARRLQEMAFLNKGLTINLTDQR 82 >UniRef50_P23992 DNA topoisomerase small subunit n=1 Tax=Enterobacteria phage T4 RepID=TOPS_BPT4 Length = 160 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 14/145 (9%) Query: 478 SQLRYGKICILADADSDG-LHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVY 536 S + Y + I+ DAD DG I L F ++ L + G + P+ +GK+ Sbjct: 29 SSMNYANVAIMTDADHDGLGSIYPSLLGFF-SNWPELFEQGRIRFVKTPVIIAQVGKKQE 87 Query: 537 YALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDD 596 + T E E + L + +++ KGLG + + RE +P + + + Sbjct: 88 WFYTVAEYESAKDALPKH----SIRYIKGLGSLEKSEYREMIQNP---VYDVVKLPENW- 139 Query: 597 QRTDAMMDMLLAKKRSEDRRNWLQE 621 + +ML+ ++ R+ W+ + Sbjct: 140 ---KELFEMLMG-DNADLRKEWMSQ 160 >UniRef50_B4V6F8 Putative uncharacterized protein n=3 Tax=Actinomycetales RepID=B4V6F8_9ACTO Length = 234 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 56/138 (40%), Gaps = 3/138 (2%) Query: 31 RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELI 90 HL EV+ + DEA + R V LHAD S+ V DDGRG + G + + Sbjct: 48 GLRHLVLEVVAYAADEAESRGGGRCTVTLHADGSVSVADDGRGTDTRFD-DSGRAVRKPV 106 Query: 91 LCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDL 150 + + G G+SVV ALS + RR G + +E G V L Sbjct: 107 MATKDLRFFDHPEPPPLPDGHPRRGMSVVAALSAWLVHTNRRAGGAWTQRYEYGVPVTGL 166 Query: 151 QVVGTCGKRNTGTSVHFW 168 V TGT VHF Sbjct: 167 TPV--ADDGTTGTLVHFR 182 >UniRef50_A7K5X7 DNA gyrase subunit B n=5 Tax=Gammaproteobacteria RepID=A7K5X7_VIBSE Length = 246 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 6/103 (5%) Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 I G+ + E L +K + QR+KGLGEMNP QL ETT+DP TRR++Q Sbjct: 149 IKRGERTMPVASFAEALDWL--VKESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQ 206 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 +TI ED D + L+ + E RRN+++E +A ++V Sbjct: 207 VTI--EDAVGADQLFTTLMG-DQVEPRRNFIEENALKVANLDV 246 >UniRef50_B9PF30 Predicted protein n=6 Tax=cellular organisms RepID=B9PF30_POPTR Length = 252 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 42/185 (22%) Query: 455 VLASQ----EVHDISVAIGIDPDSD-DLSQLR---YGKICILADADSDGLHIATLLCALF 506 V ++ EV I GI+ + + L Y +I L G + LL Sbjct: 101 VFNNERHLYEVVIIIRTHGIEKNYFLNFEFLNGTEYSRIVKL------GNQLQGLL---- 150 Query: 507 VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQL-KRKKGKPNVQRFKG 565 + G + G+ + E +E L K + +QR+KG Sbjct: 151 --------EKG---------AYVSRGERQQ---SVSSFEQAIEWLTKESRRGLIIQRYKG 190 Query: 566 LGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 LGEMN QL ETT+DPN R +++++I +D D + L+ + E RR +++ Sbjct: 191 LGEMNSDQLFETTMDPNKRTMLKVSI--KDAVAADQLFTTLMGDE-VEPRREFIEMNALR 247 Query: 626 AEIEV 630 A +++ Sbjct: 248 ANLDI 252 >UniRef50_A9DKM1 DNA gyrase subunit B n=1 Tax=Kordia algicida OT-1 RepID=A9DKM1_9FLAO Length = 208 Score = 72.7 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 16/201 (7%) Query: 13 LTGLEPVRRRPGMYTDTTRPNHLGQ----EVIDNSVDEALAGHAKRVDVILHADQSLEVI 68 + E +R RP Y E++ ++D+ + V L+ D + + Sbjct: 16 IEPYEHIRMRPQWYFTELFEEKKLDSLPLEIVKYAIDQNS----TIITVNLYTD--IFSV 69 Query: 69 DDGRGMPVDIHP--EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHG-VGISVVNALSKR 125 + +GM ++ H E + E +L + F K+ S GL+G VG+ +NA S+ Sbjct: 70 EFNKGMSLETHHRYEGDITKAEAVLLEISNYVSFRKKDDLQS-GLNGSVGLIRINAASEW 128 Query: 126 VEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLT 185 ++ +GQ F+ GE + + + ++ T + PD T F + + L Sbjct: 129 CKLLTYSNGQKGEFHFKEGE--TETRTICGSDEKKNYTKITVKPDATIFPDLKINPKTLQ 186 Query: 186 HVLKAKAVLCPGVEITFKDEI 206 + G ++ EI Sbjct: 187 EKIDNVRKKLNGFDVQLVTEI 207 >UniRef50_A9AY53 Putative uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AY53_HERA2 Length = 329 Score = 71.9 bits (175), Expect = 6e-11, Method: Composition-based stats. Identities = 60/310 (19%), Positives = 100/310 (32%), Gaps = 51/310 (16%) Query: 20 RRRPGMYTDTTRPNHLGQEVIDNSVDEAL-AGHAKRVDVILHADQSLEVIDDGRGMPVDI 78 R GMY Q ++ VD L + HA+R+ + + + V D I Sbjct: 12 RENLGMYYGGNDG-IAIQRLLVEYVDFLLKSQHAQRIQITILPEAGFVVQD----FEATI 66 Query: 79 HPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYN 138 E L L +G + + +++ + GQ Y Sbjct: 67 ESNNFCGLPEDQLFHL-------------------LGAA------QYCTIDLHKAGQHYQ 101 Query: 139 IAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGV 198 +++ V LQ+VG+ +HF P+ F + S+ + L+ A L G Sbjct: 102 LSYSGEPTVPALQLVGSSQASCR--RIHFVPNHAIFINRTSSIHQFLGSLRGLATLFRGC 159 Query: 199 EITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPE 258 I D + T + Y +GL DYL + F G E V L Sbjct: 160 RIEVVDVMQATTNQLFYPNGLRDYLDGLIYHD---LNPQRYLEFEGANEHVQIKLGLRFG 216 Query: 259 GGELLTESYVNLIPTMQGGTHV-------NGLRQGLLDAMREFCEYRNILPRGVKLSAED 311 + + L+ HV G+ +GL + + + + + Sbjct: 217 YFSRIEQC---LLRYK----HVPFEPSYRRGILKGLASGLTTYAQAHGQITASQIIEPAQ 269 Query: 312 IWD-RCAYVL 320 I D C VL Sbjct: 270 IRDFGCLLVL 279 >UniRef50_UPI0000D546F8 DNA gyrase, B subunit n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D546F8 Length = 204 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 6/99 (6%) Query: 533 KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTID 592 KE + E L ++ +K ++ R+KGLGEMNP QL ETTLD R+L+Q+ + Sbjct: 111 KENFSCYGLVEFFNTLFEMSKKG--QSISRYKGLGEMNPEQLWETTLDRANRKLLQVKL- 167 Query: 593 DEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 ED + + ML+ DR+N++Q+ +A +++ Sbjct: 168 -EDQVNAERQLIMLMGDD-VTDRKNFIQDNSIKVANLDI 204 >UniRef50_D0L8E8 DNA topoisomerase n=22 Tax=cellular organisms RepID=D0L8E8_GORB4 Length = 55 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 5/55 (9%) Query: 1 MTQT--YNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAG 50 MT Y A++I + GL+ VR+RPGMY +T +H+ EV+DN VDEA+AG Sbjct: 1 MTTQPVYGAESIAIREGLDVVRKRPGMYIGSTSSRGLHHMLWEVVDNGVDEAMAG 55 >UniRef50_C5Z2Y8 Putative uncharacterized protein Sb10g016467 (Fragment) n=1 Tax=Sorghum bicolor RepID=C5Z2Y8_SORBI Length = 255 Score = 70.0 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 68/179 (37%), Gaps = 14/179 (7%) Query: 267 YVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQ- 325 +VN + ++GG + + + + + ++ + + + +++ D+ ++ Sbjct: 3 FVNGVV-IEGGFQFDTITRHVEEHLKSSIKRKMKNVQNIEIQTSDVKSHLCVFINADYPF 61 Query: 326 ---DPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA 382 +PQF ++ +++A V + + E+ + + + Sbjct: 62 FYGEPQFQ---------DNAKVYIDPALRNAKFEEFFTEVAHSFIFKEIFRCALKETLAW 112 Query: 383 AKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLK 441 A K + + + P D ++ L + EGDSA A + R+Y ++ LK Sbjct: 113 ALKEEDESIEANPTKFEDATRVGGVDSHKCTLIITEGDSAKALALGSVRRDYFGVLALK 171 Score = 43.0 bits (100), Expect = 0.040, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 39/108 (36%), Gaps = 31/108 (28%) Query: 517 GHVYVALPPLYRID-----LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNP 571 G + + + P+ ++ +V+Y L E + + K +++ +K Sbjct: 166 GVLALKVTPILKVTDYTRDCPSQVFYTLNEYTAWE-KSKHGTELSKWSIKYYK------- 217 Query: 572 MQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + +++EDD + +K + E+R+ W+ Sbjct: 218 --------------KYFVWVNEEDD----KAIKTAFSKHKVEERKKWI 247 >UniRef50_B2G4Y3 GyrB protein (Fragment) n=1 Tax=Bacillus sp. AKG RepID=B2G4Y3_9BACI Length = 80 Score = 69.6 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 195 CPGVEITFKDEINNTEQR-WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWAL 253 +++T +D+ + +++ + Y+ G+ Y+ + E+P + D V+ +L Sbjct: 1 NRNIKLTIEDKRGHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEPVYVEGSKDGIQVEVSL 60 Query: 254 LWLPEGGELLTESYVNLIPTM 274 + EG S+ N I T Sbjct: 61 QYN-EGYTNNIYSFTNNIHTY 80 >UniRef50_C8NCI6 DNA gyrase subunit B n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCI6_9GAMM Length = 95 Score = 69.2 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 3/80 (3%) Query: 551 LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKK 610 L K ++QR+K LGEMN +L ETTLDP RR++Q+ + +D + D + L+ + Sbjct: 19 LAEGKKTYDIQRYKDLGEMNSEKLWETTLDPAVRRMLQVQL--KDARLADEIFTTLMG-E 75 Query: 611 RSEDRRNWLQEKGDMAEIEV 630 E R ++++ + A I++ Sbjct: 76 EVEPHRAFIEDNANSANIDI 95 >UniRef50_Q070G1 GyrB-like ATPase domain protein n=1 Tax=Crocodilepox virus RepID=Q070G1_CPRV Length = 1017 Score = 68.0 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 79/237 (33%), Gaps = 36/237 (15%) Query: 9 AIEVLTGLEPVRRRPGMYTDTT-----------------RPNHLGQEVIDNSVDEALAGH 51 + V P Y T L E + N++D L Sbjct: 15 EYRSMRDEAHVLANPSEYLGVTCTVTRGTIFNKRIRYHAGAAKLCDEAVSNAIDHCLITG 74 Query: 52 AKRVDVILHADQSLEVIDDGRGMPVD--IHPEEGVPAVELILCRLHAGGKFSNKNYQFSG 109 + V+V S+ V + R +PV + E G +L ++ G + + + Sbjct: 75 SDAVNVD-MRGVSICVANRSR-VPVRGALDGEPGHVIPRALLRQMRTSGNYVTR--RSVS 130 Query: 110 GLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSV---H 166 G HG G+ +++ ++R+E++V Y+ E G V++ + GT Sbjct: 131 GRHGHGLKLIHLFAERLELDVSDGDLAYSYRRE-GGDVEESVLDSPLRDERLGTRFFRLR 189 Query: 167 FWPDETFF---------DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWC 214 F PD + VSRL + A L G+ I F + W Sbjct: 190 FSPDPARLNAEREELAEGLREYVVSRLCEYVFYLAELGRGIAIHFNGDRLPYVAPWF 246 >UniRef50_D1S521 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S521_9ACTO Length = 207 Score = 63.0 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 60/198 (30%), Gaps = 42/198 (21%) Query: 1 MTQ-TYNADAIEVLTGLEPVRRRPGMYTD-----TTRPNHLGQEVIDNS---VDEALAGH 51 MT+ Y+ I VL E VR RPGMY + V+ ++ A H Sbjct: 1 MTEPDYSLAKIRVLEFDESVRERPGMYFGVGRDDPRLATRVLCAVVGHAFHPATIVAASH 60 Query: 52 AKRVDVILHADQSLEVIDD------GRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNY 105 V ++AD V DD GRGMP + G L ++S+ Sbjct: 61 TPDVVAEINADLIFSVTDDQADVLTGRGMP-----KLG------YHGSLLTSERWSSAAA 109 Query: 106 QFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSV 165 + V V R G + V+ GT V Sbjct: 110 AAVS--------------SQTTVEVWRHGHGFRQRLVGLRPVEPPAEF--AAPAGAGTRV 153 Query: 166 HFWPDETFFDSPRFSVSR 183 F D +F S + Sbjct: 154 AFVLDPAYFGSAAITTDI 171 >UniRef50_UPI0001B56D9F DNA gyrase subunit B n=1 Tax=Streptomyces sp. C RepID=UPI0001B56D9F Length = 82 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 309 AEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELL 368 A+ + + V+SVK+ P+F G T L + V+ V++ W ++ A + Sbjct: 13 ADGVGEGLVAVVSVKLDQPEFRGVTHGVLGNAAVRGCVADAVREEVDAWFARDPDTASTV 72 Query: 369 AEMAISSAQR 378 + A+ Sbjct: 73 VNRVLRDARA 82 >UniRef50_B9IF46 Predicted protein n=2 Tax=Eukaryota RepID=B9IF46_POPTR Length = 85 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 6/83 (7%) Query: 379 RMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQA------RDR 432 M K + +++ + + L EGDSA A +R Sbjct: 2 AMSGEKLIEQRQQRVNVPKFKDANEAGGRYSEECTLIFTEGDSAKALAITGGVGLARTER 61 Query: 433 EYQAIMPLKGKILNTWEVSSDEV 455 + + +GK+LN E + +++ Sbjct: 62 NFYGVFSSRGKLLNVREATPEQL 84 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B8FXX0 DNA gyrase subunit B n=70 Tax=Bacteria RepID=B8F... 762 0.0 UniRef50_O50627 DNA gyrase subunit B n=82 Tax=cellular organisms... 756 0.0 UniRef50_Q9X3Y6 DNA gyrase subunit B n=840 Tax=cellular organism... 722 0.0 UniRef50_Q6GKU0 DNA gyrase subunit B n=143 Tax=cellular organism... 707 0.0 UniRef50_P21558 DNA gyrase subunit B n=61 Tax=cellular organisms... 704 0.0 UniRef50_Q2FUD6 DNA gyrase subunit B n=1 Tax=Methanospirillum hu... 700 0.0 UniRef50_P43703 DNA topoisomerase 4 subunit B n=456 Tax=Bacteria... 699 0.0 UniRef50_Q9A0L0 DNA gyrase subunit B n=56 Tax=cellular organisms... 698 0.0 UniRef50_Q04WF3 DNA gyrase subunit B n=20 Tax=Bacteria RepID=Q04... 692 0.0 UniRef50_C7M118 DNA gyrase subunit B n=1 Tax=Acidimicrobium ferr... 688 0.0 UniRef50_P43053 DNA gyrase subunit B n=78 Tax=Bacteria RepID=GYR... 680 0.0 UniRef50_A5TY73 DNA gyrase subunit B n=542 Tax=Bacteria RepID=GY... 679 0.0 UniRef50_D0MI55 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Bact... 679 0.0 UniRef50_Q94BZ7 DNA gyrase subunit B, mitochondrial n=83 Tax=cel... 678 0.0 UniRef50_P0AES7 DNA gyrase subunit B n=740 Tax=root RepID=GYRB_E... 674 0.0 UniRef50_C7QFM2 DNA gyrase subunit B n=8 Tax=Bacteria RepID=C7QF... 670 0.0 UniRef50_P34031 DNA gyrase subunit B n=54 Tax=Bacteria RepID=GYR... 670 0.0 UniRef50_O51859 DNA gyrase subunit B n=208 Tax=Bacteria RepID=GY... 670 0.0 UniRef50_B6GDL9 DNA gyrase subunit B n=2 Tax=Collinsella RepID=B... 670 0.0 UniRef50_P50074 DNA gyrase subunit B, novobiocin-resistant n=117... 668 0.0 UniRef50_B7G298 Predicted protein n=3 Tax=cellular organisms Rep... 666 0.0 UniRef50_Q2NJM1 DNA gyrase subunit B n=5 Tax=Mollicutes RepID=Q2... 665 0.0 UniRef50_D0J983 DNA gyrase subunit B n=22 Tax=cellular organisms... 664 0.0 UniRef50_A9KS52 DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Bac... 661 0.0 UniRef50_O67137 DNA gyrase subunit B n=13 Tax=cellular organisms... 653 0.0 UniRef50_UPI0001A7B046 ATP binding / DNA binding / DNA topoisome... 652 0.0 UniRef50_Q1V1K8 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA... 651 0.0 UniRef50_B8GXQ0 DNA gyrase subunit B n=17 Tax=cellular organisms... 648 0.0 UniRef50_B6IVV7 DNA gyrase subunit B n=192 Tax=cellular organism... 647 0.0 UniRef50_B1ZTK2 DNA gyrase subunit B n=194 Tax=cellular organism... 644 0.0 UniRef50_B9ZQ26 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thio... 643 0.0 UniRef50_B6BRC2 DNA gyrase subunit B n=1 Tax=Candidatus Pelagiba... 643 0.0 UniRef50_Q9Z8R3 DNA gyrase subunit B n=80 Tax=cellular organisms... 643 0.0 UniRef50_C1DUC4 DNA gyrase subunit B n=5 Tax=Bacteria RepID=C1DU... 643 0.0 UniRef50_Q2S2H3 Type II DNA topoisomerase, B subunit n=3 Tax=Bac... 643 0.0 UniRef50_A3EQC0 DNA gyrase subunit B n=7 Tax=Bacteria RepID=A3EQ... 642 0.0 UniRef50_B2URM5 DNA gyrase subunit B n=25 Tax=Bacteria RepID=B2U... 641 0.0 UniRef50_P66938 DNA topoisomerase 4 subunit B n=158 Tax=Bacteria... 640 0.0 UniRef50_C4G1I8 Putative uncharacterized protein n=1 Tax=Abiotro... 640 0.0 UniRef50_B2UCF3 DNA gyrase subunit B n=47 Tax=Proteobacteria Rep... 638 0.0 UniRef50_D0LFL2 DNA gyrase subunit B n=1 Tax=Haliangium ochraceu... 631 e-179 UniRef50_D1BTM8 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Acti... 630 e-179 UniRef50_P50028 DNA gyrase subunit B n=331 Tax=cellular organism... 630 e-179 UniRef50_B5YGU1 DNA gyrase subunit B n=9 Tax=Bacteria RepID=B5YG... 630 e-179 UniRef50_Q1MQ88 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q1MQ... 628 e-178 UniRef50_Q1RHT8 DNA gyrase subunit B n=702 Tax=Proteobacteria Re... 627 e-178 UniRef50_C3XDF7 DNA gyrase subunit B n=5 Tax=Campylobacterales R... 627 e-178 UniRef50_UPI0001C311B1 DNA gyrase, B subunit n=1 Tax=Conexibacte... 624 e-177 UniRef50_D2NTW6 Type IIA topoisomerase, B subunit n=10 Tax=Actin... 623 e-177 UniRef50_Q83G36 DNA gyrase subunit B-like protein n=2 Tax=Trophe... 622 e-176 UniRef50_Q2GD49 DNA gyrase subunit B n=9 Tax=cellular organisms ... 619 e-175 UniRef50_P94281 DNA gyrase subunit B n=211 Tax=cellular organism... 618 e-175 UniRef50_A6DH73 DNA gyrase subunit B n=7 Tax=cellular organisms ... 617 e-175 UniRef50_A1TI33 DNA gyrase subunit B n=16 Tax=Burkholderiales Re... 616 e-175 UniRef50_B3TAI0 Putative DNA gyrase B n=1 Tax=uncultured marine ... 615 e-174 UniRef50_A1SCM1 DNA gyrase subunit B n=28 Tax=Actinomycetales Re... 615 e-174 UniRef50_O33367 DNA gyrase subunit B n=6 Tax=Bacteria RepID=GYRB... 614 e-174 UniRef50_Q89B37 DNA gyrase subunit B n=30 Tax=Proteobacteria Rep... 613 e-174 UniRef50_B3R5I8 DNA topoisomerase IV, subunit B n=15 Tax=Proteob... 611 e-173 UniRef50_A0Q197 DNA topoisomerase IV subunit B n=34 Tax=Clostrid... 610 e-173 UniRef50_A8LVU4 DNA gyrase subunit B domain protein n=37 Tax=Act... 609 e-173 UniRef50_A0LUT9 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Act... 608 e-172 UniRef50_Q59526 DNA topoisomerase 4 subunit B n=9 Tax=Bacteria R... 606 e-172 UniRef50_C6PY14 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clos... 603 e-171 UniRef50_D2R8B1 DNA gyrase, B subunit n=80 Tax=Bacteria RepID=D2... 602 e-170 UniRef50_D0RQH0 DNA gyrase subunit B n=2 Tax=Bacteria RepID=D0RQ... 601 e-170 UniRef50_P78016 DNA topoisomerase 4 subunit B n=3 Tax=Mycoplasma... 595 e-168 UniRef50_Q9ZLX3 DNA gyrase subunit B n=50 Tax=Epsilonproteobacte... 593 e-168 UniRef50_UPI00016C54E0 DNA gyrase subunit B n=1 Tax=Gemmata obsc... 593 e-168 UniRef50_D0WQJ3 Putative DNA gyrase subunit B n=1 Tax=Actinomyce... 592 e-167 UniRef50_Q98RQ4 DNA gyrase subunit B n=13 Tax=cellular organisms... 592 e-167 UniRef50_Q4AAR9 Topoisomerase IV subunit B n=9 Tax=Mycoplasma Re... 590 e-167 UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota Rep... 590 e-167 UniRef50_C5B4P3 DNA gyrase, subunit B n=1 Tax=Methylobacterium e... 588 e-166 UniRef50_A6G5S5 DNA gyrase subunit B n=11 Tax=Bacteria RepID=A6G... 587 e-166 UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 587 e-166 UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA 585 e-165 UniRef50_UPI0000DA3D74 PREDICTED: similar to topoisomerase (DNA)... 584 e-165 UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota Rep... 584 e-165 UniRef50_C0W359 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Acti... 584 e-165 UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC29... 583 e-165 UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 583 e-165 UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=... 582 e-164 UniRef50_D1C5K6 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Spha... 581 e-164 UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID... 575 e-162 UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2... 574 e-162 UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2... 573 e-162 UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuni... 572 e-161 UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa C... 570 e-161 UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae R... 570 e-161 UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP... 562 e-158 UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus AT... 558 e-157 UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms ... 556 e-156 UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalu... 554 e-156 UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma poly... 553 e-155 UniRef50_A7I8U0 DNA gyrase subunit B n=1 Tax=Candidatus Methanor... 552 e-155 UniRef50_D0RNK2 DNA topoisomerase IV, B subunit n=1 Tax=alpha pr... 549 e-154 UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID... 549 e-154 UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group... 549 e-154 UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii Re... 547 e-154 UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyosteli... 546 e-154 UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermoph... 546 e-154 UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=... 541 e-152 UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae Re... 541 e-152 UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon biene... 539 e-151 UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dicty... 535 e-150 UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 534 e-150 UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A... 533 e-149 UniRef50_Q9HGH7 DNA topoisomerase 2 (Fragment) n=1 Tax=Pichia ku... 531 e-149 UniRef50_A8S818 Putative uncharacterized protein n=6 Tax=Bacteri... 530 e-149 UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP... 528 e-148 UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV... 526 e-147 UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS11... 517 e-145 UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurel... 511 e-143 UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 506 e-142 UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodact... 501 e-140 UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_P... 497 e-139 UniRef50_A3DC64 DNA topoisomerase (ATP-hydrolyzing) n=11 Tax=Bac... 496 e-138 UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassio... 494 e-138 UniRef50_Q9FAX1 DNA gyrase subunit B (Fragment) n=60 Tax=Bacteri... 489 e-136 UniRef50_A6TSS9 DNA gyrase, subunit B domain protein n=1 Tax=Alk... 487 e-136 UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginali... 485 e-135 UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycod... 483 e-135 UniRef50_Q1NK64 DNA topoisomerase II:ATP-binding region, ATPase-... 483 e-135 UniRef50_Q9FAX2 DNA gyrase subunit B (Fragment) n=166 Tax=root R... 475 e-132 UniRef50_B9U3G6 DNA topoisomerase 2 (Fragment) n=1 Tax=Pleurotus... 474 e-132 UniRef50_Q18GY2 DNA gyrase subunit B n=10 Tax=cellular organisms... 470 e-131 UniRef50_B2RL68 DNA topoisomerase IV B subunit n=60 Tax=Bacteria... 470 e-131 UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infesta... 469 e-130 UniRef50_D2QHC5 DNA topoisomerase type IIA subunit B region 2 do... 469 e-130 UniRef50_B1ZME3 DNA topoisomerase type IIA subunit B region 2 do... 464 e-129 UniRef50_P77966 Ssp gyrB intein n=45 Tax=cellular organisms RepI... 463 e-129 UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepI... 462 e-128 UniRef50_UPI00016B23A5 DNA gyrase subunit B n=1 Tax=candidate di... 457 e-127 UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae Re... 457 e-127 UniRef50_Q7RHG3 DNA topoisomerase II, putative n=3 Tax=Plasmodiu... 456 e-126 UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV 454 e-126 UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 ... 450 e-124 UniRef50_Q10XN8 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q10X... 449 e-124 UniRef50_Q59189 DNA topoisomerase 4 subunit B n=27 Tax=Bacteria ... 443 e-122 UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis... 442 e-122 UniRef50_C9DGI8 Gp60plus39 DNA topoisomerase subunit n=1 Tax=Def... 439 e-121 UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon... 439 e-121 UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q... 439 e-121 UniRef50_Q4UIX0 DNA topoisomerase II, putative n=2 Tax=Theileria... 439 e-121 UniRef50_C7PPD8 DNA topoisomerase type IIA subunit B region 2 do... 439 e-121 UniRef50_C8XUB6 Topoisomerase II large subunit n=1 Tax=Shigella ... 435 e-120 UniRef50_B3LD45 DNA gyrase subunit b, putative n=1 Tax=Plasmodiu... 431 e-119 UniRef50_Q9X3Y5 DNA gyrase subunit B (Fragment) n=740 Tax=cellul... 428 e-118 UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO 425 e-117 UniRef50_A7ASL8 DNA gyrase subunit B, putative n=1 Tax=Babesia b... 407 e-112 UniRef50_Q44272 DNA gyrase subunit B (Fragment) n=2942 Tax=cellu... 406 e-111 UniRef50_UPI0001976865 DNA topoisomerase (ATP-hydrolyzing) n=1 T... 404 e-111 UniRef50_A3Q8K7 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Myco... 404 e-111 UniRef50_D2QB32 GyrB2 DNA gyrase subunit B n=8 Tax=Bifidobacteri... 398 e-109 UniRef50_D2RAT5 DNA gyrase, B subunit, C-terminal domain protein... 398 e-109 UniRef50_B6XTR9 Putative uncharacterized protein n=2 Tax=Bifidob... 394 e-108 UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 391 e-107 UniRef50_A1EGM8 DNA gyrase subunit B (Fragment) n=1 Tax=uncultur... 390 e-106 UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2... 380 e-103 UniRef50_A5K8Q8 DNA gyrase subunit b, putative n=1 Tax=Plasmodiu... 378 e-103 UniRef50_Q8GD47 DNA gyrase subunit B (Fragment) n=21 Tax=Bacteri... 376 e-102 UniRef50_Q2JC55 DNA topoisomerase II n=4 Tax=Actinomycetales Rep... 376 e-102 UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepI... 376 e-102 UniRef50_Q56C43 Gp60plus39 DNA topoisomerase subunit n=3 Tax=T4-... 375 e-102 UniRef50_Q76Z86 Topoisomerase II large subunit n=1 Tax=Aeromonas... 368 e-100 UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5... 365 4e-99 UniRef50_C3IT50 DNA gyrase subunit B n=3 Tax=Bacillus thuringien... 363 9e-99 UniRef50_B6EUG7 DNA gyrase subunit B (Fragment) n=6 Tax=Actinomy... 363 1e-98 UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses... 360 8e-98 UniRef50_A6N697 DNA gyrase subunit B (Fragment) n=2 Tax=uncultur... 357 1e-96 UniRef50_Q196X4 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 355 4e-96 UniRef50_Q6UGM9 DNA gyrase B subunit (Fragment) n=1 Tax=Fusobact... 341 5e-92 UniRef50_Q04PE7 DNA topoisomerase (ATP-hydrolyzing), subunit B n... 331 4e-89 UniRef50_B4V0A2 DNA gyrase subunit B n=1 Tax=Streptomyces sp. Mg... 331 4e-89 UniRef50_B2ZYK3 Type IIA topoisomerase n=1 Tax=Ralstonia phage R... 330 1e-88 UniRef50_C0DAN0 Putative uncharacterized protein (Fragment) n=1 ... 325 2e-87 UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole geno... 310 1e-82 UniRef50_B5H7D6 DNA gyrase subunit B n=2 Tax=Streptomyces RepID=... 308 3e-82 UniRef50_Q00942 DNA topoisomerase 2 n=7 Tax=African swine fever ... 303 1e-80 UniRef50_Q8I528 Term=DNA gyrase subunit B;evidence=inferred from... 291 5e-77 UniRef50_Q0QCK3 ParE (Fragment) n=163 Tax=cellular organisms Rep... 282 3e-74 UniRef50_P09176 DNA topoisomerase large subunit n=13 Tax=T4-like... 282 4e-74 UniRef50_A8NKQ4 Putative uncharacterized protein n=1 Tax=Coprino... 274 6e-72 UniRef50_C9E3K9 DNA gyrase subunit B (Fragment) n=1 Tax=Rhodococ... 264 7e-69 UniRef50_A3SXB5 DNA topoisomerase IV subunit B n=1 Tax=Sulfitoba... 253 1e-65 UniRef50_B4YQA0 DNA gyrase subunit B (Fragment) n=1 Tax=Lactobac... 244 7e-63 UniRef50_A7XYG8 GyrB (Fragment) n=6 Tax=Chlamydia trachomatis Re... 240 1e-61 UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea Rep... 238 5e-61 UniRef50_B1N7R8 Gyrase b (Fragment) n=1 Tax=uncultured bacterium... 235 5e-60 UniRef50_B3SFQ4 Putative uncharacterized protein (Fragment) n=1 ... 232 2e-59 UniRef50_C5Z2Y6 Putative uncharacterized protein Sb10g016438 (Fr... 229 3e-58 UniRef50_Q1CZR7 DNA gyrase, B subunit, truncated n=1 Tax=Myxococ... 223 2e-56 UniRef50_UPI00016C4A69 DNA gyrase subunit B n=2 Tax=Gemmata obsc... 213 2e-53 UniRef50_Q2SFQ7 Type IIA topoisomerase (DNA gyrase/topo II, topo... 212 2e-53 UniRef50_C1ZHM4 Type IIA topoisomerase (DNA gyrase/topo II, topo... 211 7e-53 UniRef50_A9CRV4 DNA gyrase subunit B (Fragment) n=2 Tax=Bradyrhi... 199 2e-49 UniRef50_D2J2Q7 DNA gyrase subunit B (Fragment) n=7 Tax=Coryneba... 197 1e-48 UniRef50_B1PJM5 DNA gyrase subunit B (Fragment) n=1 Tax=Micromon... 197 2e-48 UniRef50_UPI0001C4799C UPI0001C4799C related cluster n=1 Tax=unk... 194 7e-48 UniRef50_A7C3L4 Topoisomerase B subunit n=1 Tax=Beggiatoa sp. PS... 190 9e-47 UniRef50_D1AIT2 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Seba... 189 4e-46 UniRef50_C0F8C8 DNA gyrase, B subunit (Fragment) n=1 Tax=Wolbach... 182 5e-44 UniRef50_A6N6C7 DNA gyrase subunit B (Fragment) n=1 Tax=uncultur... 178 6e-43 UniRef50_Q6Y3A9 Gyrase B (Fragment) n=1 Tax=Pelobacter acidigall... 173 2e-41 UniRef50_UPI0001788AA3 transcriptional regulator, ArsR family n=... 165 3e-39 UniRef50_C7UEA1 Predicted protein n=22 Tax=Enterococcus faecalis... 161 6e-38 UniRef50_B9XLD1 Type IIA topoisomerase (DNA gyrase/topo II topoi... 160 1e-37 UniRef50_C7P9T7 Type IIA topoisomerase (DNA gyrase/topo II topoi... 155 4e-36 UniRef50_Q6Y3B0 Gyrase B (Fragment) n=1 Tax=Geobacter pelophilus... 147 1e-33 UniRef50_Q9FYE9 DNA gyrase subunit B-like protein n=3 Tax=Arabid... 147 2e-33 UniRef50_A8V367 Gyrase B (Fragment) n=1 Tax=Hydrogenivirga sp. 1... 146 2e-33 UniRef50_C1SL26 DNA gyrase subunit B n=1 Tax=Denitrovibrio aceti... 141 9e-32 UniRef50_C0SNC2 DNA gyrase subunit B (Fragment) n=87 Tax=Lactoba... 141 9e-32 UniRef50_C3RSA4 DNA gyrase subunit B (Fragment) n=3 Tax=Lactobac... 138 6e-31 UniRef50_Q7UUI4 DNA gyrase subunit B n=1 Tax=Rhodopirellula balt... 136 2e-30 UniRef50_UPI0001908742 DNA topoisomerase IV subunit B n=1 Tax=Rh... 135 4e-30 UniRef50_Q44273 DNA gyrase subunit B (Fragments) n=5 Tax=Acineto... 133 2e-29 UniRef50_A5M9T1 DNA gyrase subunit B n=2 Tax=Streptococcus pneum... 132 5e-29 UniRef50_UPI0001698B4B DNA gyrase, B subunit n=1 Tax=Endoriftia ... 130 2e-28 UniRef50_D2PP74 GCN5-related N-acetyltransferase n=1 Tax=Kribbel... 128 4e-28 UniRef50_A6G3Y8 Type IIA topoisomerase (DNA gyrase/topo II, topo... 128 4e-28 UniRef50_Q2B8E8 DNA gyrase, B subunit n=1 Tax=Bacillus sp. NRRL ... 124 8e-27 UniRef50_Q23CP4 DNA topoisomerase 2 n=3 Tax=Tetrahymena thermoph... 123 3e-26 UniRef50_UPI00016B21F7 DNA gyrase subunit B n=1 Tax=candidate di... 119 3e-25 UniRef50_A0BK45 Chromosome undetermined scaffold_111, whole geno... 117 9e-25 UniRef50_P23992 DNA topoisomerase small subunit n=1 Tax=Enteroba... 117 2e-24 UniRef50_A0MYL3 DNA gyrase B (Fragment) n=14 Tax=Streptomyces Re... 114 1e-23 UniRef50_A9ZPQ0 DNA gyrase subunit B (Fragment) n=5 Tax=Coryneba... 113 2e-23 UniRef50_A7K5X7 DNA gyrase subunit B n=5 Tax=Gammaproteobacteria... 111 1e-22 UniRef50_B4V6F8 Putative uncharacterized protein n=3 Tax=Actinom... 108 5e-22 UniRef50_Q6E0M3 GyrB (Fragment) n=1 Tax=Bacillus thuringiensis R... 106 3e-21 UniRef50_B9PF30 Predicted protein n=6 Tax=cellular organisms Rep... 105 4e-21 UniRef50_A9DKM1 DNA gyrase subunit B n=1 Tax=Kordia algicida OT-... 104 8e-21 UniRef50_Q070G7 GyrB-like ATPase domain protein n=1 Tax=Crocodil... 104 8e-21 UniRef50_Q2GFV4 DNA mismatch repair protein mutL n=9 Tax=Alphapr... 104 9e-21 UniRef50_Q9F8M6 DNA gyrase subunit B (Fragment) n=1 Tax=Carboxyd... 102 6e-20 UniRef50_A9AY53 Putative uncharacterized protein n=1 Tax=Herpeto... 102 7e-20 UniRef50_Q9K2S8 GyrB protein (Fragment) n=2 Tax=Mycoplasma homin... 101 1e-19 UniRef50_B1PL25 DNA gyrase subunit B (Fragment) n=79 Tax=Bacteri... 100 1e-19 UniRef50_UPI0000382E10 COG0187: Type IIA topoisomerase (DNA gyra... 100 3e-19 UniRef50_B9ZDG0 DNA topoisomerase VI, B subunit n=1 Tax=Natrialb... 98 1e-18 UniRef50_C5Z2Y8 Putative uncharacterized protein Sb10g016467 (Fr... 95 9e-18 UniRef50_Q401L8 DNA gyrase subunit B (Fragment) n=1 Tax=Mycobact... 94 2e-17 UniRef50_Q070G1 GyrB-like ATPase domain protein n=1 Tax=Crocodil... 93 4e-17 UniRef50_D2RUJ2 DNA topoisomerase VI, B subunit n=1 Tax=Haloterr... 92 6e-17 UniRef50_A4YWI0 DNA gyrase subunit B GyrB n=1 Tax=Bradyrhizobium... 90 3e-16 UniRef50_B0C128 Putative uncharacterized protein n=1 Tax=Acaryoc... 89 6e-16 UniRef50_UPI0000D546F8 DNA gyrase, B subunit n=1 Tax=Psychroflex... 85 1e-14 UniRef50_C8NCI6 DNA gyrase subunit B n=1 Tax=Cardiobacterium hom... 84 2e-14 Sequences not found previously or not previously below threshold: >UniRef50_B8FXX0 DNA gyrase subunit B n=70 Tax=Bacteria RepID=B8FXX0_DESHD Length = 644 Score = 762 bits (1968), Expect = 0.0, Method: Composition-based stats. Identities = 247/638 (38%), Positives = 369/638 (57%), Gaps = 15/638 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 T YNA IEVL GLE VR+RPGMY +T +HL E++DNS+DEALAG+ ++V Sbjct: 13 TNDYNAGQIEVLEGLEAVRKRPGMYIGSTSLRGLHHLVYEIVDNSIDEALAGYCDTIEVT 72 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 +H D S+ V+D+GRG+PVDIHP+ G PAVE+ L LHAGGKFS Y+ SGGLHGVG+SV Sbjct: 73 IHKDNSISVVDNGRGIPVDIHPKLGKPAVEVALTVLHAGGKFSGSAYKVSGGLHGVGMSV 132 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS + V VR+DG +Y+ F G+ +L V+G TGT++ F PD F+ Sbjct: 133 VNALSTWLHVEVRKDGNIYHQEFMRGKTKTELAVIGQVDPNQTGTTITFSPDPEIFEDTV 192 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 F L H L+ + L V IT D + ++ + + G+ D++ +L +P Sbjct: 193 FLFDTLAHRLRELSFLNKKVSITLIDAREDKKEVYYHTGGIYDFVKYINRSKESLHPEPI 252 Query: 239 IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 D V+ ++ + E L SY N I T +GGTH +G + L ++ Sbjct: 253 YFEAEKDGVQVEVSMQYNDGYVENLF-SYANNIHTHEGGTHESGFKAALTRVANDYARKN 311 Query: 299 NILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 NIL LS EDI + V+SVK+ +PQF GQTK +L + + + V + + + Sbjct: 312 NILKANEANLSGEDIREGLTAVISVKVPEPQFEGQTKTKLGNSEIRSIVDSITGEGLSAF 371 Query: 358 LNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTEL 414 +N + + E +I +++ R A K RK ALPGKLADC+ ++ E+ Sbjct: 372 FEENPAIGKKVIEKSIQASRAREAARKARELTRRKSALEVSALPGKLADCSWKEAELCEM 431 Query: 415 FLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS 474 ++VEGDSAGGSAKQ RDR +QAI+PL+GKILN + D +L + E+ + A+G Sbjct: 432 YIVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKARLDRILGNAEIRAMITAMGTGISE 491 Query: 475 -DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 D+ + RY K+ I+ DAD DG HI LL F ++ + L+++ +VY+A PPL+++ GK Sbjct: 492 DFDIEKARYHKLVIMTDADVDGAHIRILLLTFFFRYMKPLLENNYVYIAQPPLFKVKKGK 551 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 +++Y + EE + +++ R + +QR+KGLGEMN QL ETT+DP R ++Q+T+ Sbjct: 552 DIHYVYSNEELAKLQDEIGRD--RVEIQRYKGLGEMNAEQLWETTMDPAKRTILQVTM-- 607 Query: 594 EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 ED + D + +L+ E RR ++Q+ ++V Sbjct: 608 EDAIKADELFTILMG-DVVEPRREFIQDNAQYVRNLDV 644 >UniRef50_O50627 DNA gyrase subunit B n=82 Tax=cellular organisms RepID=GYRB_BACHD Length = 637 Score = 756 bits (1953), Expect = 0.0, Method: Composition-based stats. Identities = 253/639 (39%), Positives = 374/639 (58%), Gaps = 18/639 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y+ I+VL GLE VR+RPGMY +T +HL E++DNS+DEA+AG + V++ Sbjct: 6 QAYDESQIQVLEGLEAVRKRPGMYIGSTSSRGLHHLVWEIVDNSIDEAMAGFCDEIGVVI 65 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D S+ V D+GRG+PV IH + G PAVE+I+ LHAGGKF Y+ SGGLHGVG SVV Sbjct: 66 EEDNSITVTDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 125 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPR 178 NALS +EV V R+G+V+ F G DL+V+GT + TGT +HF PD F ++ Sbjct: 126 NALSTMLEVEVHREGKVHYQKFHRGVPAADLEVIGTTDR--TGTKIHFKPDGDIFTETTV 183 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-QRWCYQDGLNDYLAEAVNGLPTLPEKP 237 F L L+ A L G+ I D + + Y+ G+ ++ TL E P Sbjct: 184 FEYDTLASRLRELAFLNKGLRIKITDMREEEKSDEFHYEGGIASFVEHLNRTRETLHETP 243 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 V+ A+ + +G S+ N I T +GGTH +G + GL + ++ Sbjct: 244 IHIEGEKQGVYVEIAVQYN-DGFTSNIYSFANNINTHEGGTHESGFKTGLTRVINDYARK 302 Query: 298 RNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 N+ L+ ED+ + ++SVK+ DPQF GQTK +L + + + + F Sbjct: 303 HNLFKESDPNLTGEDVREGLTAIISVKIPDPQFEGQTKTKLGNSEARTITDSLFTEHFSR 362 Query: 357 WLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTE 413 +L ++ Q A L + + +++ R A K RK +LPGKLADC+++D + +E Sbjct: 363 FLIEHPQVARKLVDKGLMASRAREAAKKARELTRRKSALEVSSLPGKLADCSSRDASISE 422 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD 473 +++VEGDSAGGSAKQ RDR +QAI+PL+GKILN + D++LA+ E+ I A+G Sbjct: 423 IYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILANNEIRAIITALGTGIG 482 Query: 474 -SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG 532 D+ + RY KI I+ DAD DG HI TL+ F ++ R L++HG+VY+A PPLY++ G Sbjct: 483 DDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQG 542 Query: 533 KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTID 592 K++ YA + E + +L QL K KP +QR+KGLGEMNP QL ETT+DP R ++Q+T+ Sbjct: 543 KDIQYAYGDAELQEILSQLP-DKAKPGIQRYKGLGEMNPSQLWETTMDPGQRTVLQVTL- 600 Query: 593 DEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 ED + D + ++L+ R E RR+++QE +++ Sbjct: 601 -EDAMKADEIFEILMG-DRVEPRRDFIQENARYVKNLDI 637 >UniRef50_Q9X3Y6 DNA gyrase subunit B n=840 Tax=cellular organisms RepID=GYRB_BACAN Length = 640 Score = 722 bits (1863), Expect = 0.0, Method: Composition-based stats. Identities = 244/639 (38%), Positives = 374/639 (58%), Gaps = 18/639 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 +Y+ I+VL GLE VR+RPGMY +T +HL E++DNS+DEALAG+ ++V + Sbjct: 9 NSYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCDEINVSI 68 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D S+ V D+GRG+PV I + G PAVE+I+ LHAGGKF Y+ SGGLHGVG SVV Sbjct: 69 EEDNSIRVTDNGRGIPVGIQEKMGRPAVEVIMTVLHAGGKFGGGGYKVSGGLHGVGASVV 128 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPR 178 NALS +EV V R+G+++ +E G V DL+V+G TGT F PD F ++ Sbjct: 129 NALSTELEVFVHREGKIHYQKYERGIPVADLKVIGDTD--QTGTITRFKPDPEIFQETTV 186 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNT-EQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 + L ++ A L +++T +D+ + ++ + Y+ G+ Y+ + E+P Sbjct: 187 YEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEFHYEGGIKSYVEHLNRSKQPIHEEP 246 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 + D V+ +L + EG S+ N I T +GGTH G + L + ++ Sbjct: 247 VYVEGSKDGIQVEVSLQYN-EGYTNNIYSFTNNIHTYEGGTHEVGFKTALTRVINDYGRK 305 Query: 298 RNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 +IL L+ ED+ + ++S+K +PQF GQTK +L + + V +AF Sbjct: 306 NSILKDADSNLTGEDVREGLTAIVSIKHPNPQFEGQTKTKLGNSEARTITESVFSEAFEK 365 Query: 357 WLNQNVQAAELLAEM---AISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTE 413 +L +N A + E A + +A + RK +LPGKLADC+++D +E Sbjct: 366 FLLENPNVARKIVEKGTMAARARVAAKKARELTRRKSALEVSSLPGKLADCSSKDPAISE 425 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP- 472 +++VEGDSAGGSAKQ RDR +QAI+PLKGKI+N + D++L++ EV I AIG + Sbjct: 426 IYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVEKARLDKILSNDEVRTIITAIGTNIG 485 Query: 473 DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG 532 D+ + RY K+ I+ DAD DG HI TLL F ++ R +++HG++Y+A PPL+++ G Sbjct: 486 GDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQG 545 Query: 533 KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTID 592 K++ YA E+E E +L +L + KP +QR+KGLGEMNP QL ETT+DP R L+Q+++ Sbjct: 546 KKIQYAYNEKELEKILAELP-AQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSL- 603 Query: 593 DEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 +D D ++L+ + E RRN++QE +++ Sbjct: 604 -QDAIEADETFEILMG-DKVEPRRNFIQENAKYVKNLDI 640 >UniRef50_Q6GKU0 DNA gyrase subunit B n=143 Tax=cellular organisms RepID=GYRB_STAAR Length = 644 Score = 707 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 242/640 (37%), Positives = 362/640 (56%), Gaps = 19/640 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 T Y A I+VL GLE VR+RPGMY +T +HL E++DNS+DEALAG+A +++V+ Sbjct: 11 TDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVV 70 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 + D ++V D+GRG+PVDI + G PAVE+IL LHAGGKF Y+ SGGLHGVG SV Sbjct: 71 IEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLHGVGSSV 130 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSP 177 VNALS+ +EV V R+ +Y+ A++ G DL+ VGT K TGT + F D F ++ Sbjct: 131 VNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGTTDK--TGTVIRFKADGEIFTETT 188 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNT---EQRWCYQDGLNDYLAEAVNGLPTLP 234 ++ L ++ A L G++IT +DE + E + Y+ G+ Y+ + Sbjct: 189 VYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGGIKSYVELLNENKEPIH 248 Query: 235 EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 ++P + + D V+ A+ + G +Y N I T +GGTH +G ++ L + + Sbjct: 249 DEPIYIHQSKDDIEVEIAIQYN-SGYATNLLTYANNIHTYEGGTHEDGFKRALTRVLNSY 307 Query: 295 -CEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 + + +LS ED + ++S+K DPQF GQTK +L + + V + + Sbjct: 308 GLSSKIMKEDKDRLSGEDTREGMTAIISIKHGDPQFEGQTKTKLGNSEVRQVVDKLFSEH 367 Query: 354 FILWLNQNVQAAELLAEMAIS---SAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLN 410 F +L +N Q A + E I + +A + RK +LPGKLADC+++ Sbjct: 368 FERFLYENPQVARTVVEKGIMAARARVAAKKAREVTRRKSALDVASLPGKLADCSSKSPE 427 Query: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 E+FLVEGDSAGGS K RD QAI+PL+GKILN + D +L + E+ + A G Sbjct: 428 ECEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQMITAFGT 487 Query: 471 DP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 DL++ RY KI I+ DAD DG HI TLL F + R L++ G+VY+A PPLY++ Sbjct: 488 GIGGDFDLAKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKL 547 Query: 530 DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQL 589 GK+ YY + E + + +L K ++ R+KGLGEMN QL ETT++P R L+Q+ Sbjct: 548 TQGKQKYYVYNDRELDKLKSEL-NPTPKWSIARYKGLGEMNADQLWETTMNPEHRALLQV 606 Query: 590 TIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + ED D +ML+ E+RR ++++ A ++ Sbjct: 607 KL--EDAIEADQTFEMLMG-DVVENRRQFIEDNAVYANLD 643 >UniRef50_P21558 DNA gyrase subunit B n=61 Tax=cellular organisms RepID=GYRB_HALSQ Length = 639 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 245/644 (38%), Positives = 366/644 (56%), Gaps = 19/644 (2%) Query: 1 MTQ--TYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRV 55 M+Q Y A I+VL GLE VR+RP MY +T +HL EV+DNS+DEALAGH + Sbjct: 1 MSQDNEYGAGQIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGHCDAI 60 Query: 56 DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115 +V LH D S+ V D+GRG+PV H + PA+E+I+ LHAGGKF NK+YQ SGGLHGVG Sbjct: 61 EVALHEDGSVSVTDNGRGIPVGTHEQYDRPALEVIMTVLHAGGKFDNKSYQVSGGLHGVG 120 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQD--LQVVGTCGKRNTGTSVHFWPDETF 173 ++VVNALS +EV V+ DG V+ FE GE + +V +TGT++ FWPD+ Sbjct: 121 VTVVNALSSELEVEVKHDGAVWTHRFEVGEPQVEEFERVRDLEPGEDTGTTIRFWPDDGI 180 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 F++ F L + L+ A L GVEI+ DE + + ++ G+ +++ L Sbjct: 181 FETTEFDFKTLENRLRELAFLNSGVEISLSDERTDESSTFLFEGGIREFVEYLNETKTAL 240 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 + + + V+ A+ + + ++ N I T +GGTH+ G + L + + Sbjct: 241 HDDVIYYDDESEGIEVEIAMQ-ATDELQGSIHAFANNINTREGGTHLTGFKTALTRVVND 299 Query: 294 FCEYRNILP--RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 351 + ++L G L ED+ + V+SVK DPQF GQTK +L + + V V Sbjct: 300 YANSHDMLDDLDGDNLRGEDVREGLTAVISVKHPDPQFEGQTKTKLGNSEVRGIVESVTH 359 Query: 352 DAFILWLNQNVQAAELLAEMAIS---SAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408 + +N A + A+ + + +A + RK +LPGKLADC ++D Sbjct: 360 QQLGTFFEENPDTATAIISKAVEAARARKAAKQAEELTRRKSALESTSLPGKLADCQSRD 419 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 + +ELF+VEGDSAGGSAKQ RDR++QAI+PLKGKILN + D +L + E+ + AI Sbjct: 420 PSESELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKHRLDRILENDEIRALITAI 479 Query: 469 GIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 G D+ + RY ++ ++ DAD DG HI TLL L +H R L++ G+VY A PPLY Sbjct: 480 GGGVGDEFDIEKARYQRLILMTDADVDGAHIRTLLLTLLYRHMRPLIEAGYVYAAQPPLY 539 Query: 528 RIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLV 587 R+ Y A+ E E++ ++E+ VQRFKGLGEMNP QL +TT++P R L Sbjct: 540 RVRYRGNTYDAMDEAERDRIIEEECN-GNPTQVQRFKGLGEMNPDQLWDTTMNPENRVLK 598 Query: 588 QLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE-IEV 630 ++T+ ED D M ++L+ R+ ++++ + AE +++ Sbjct: 599 RITV--EDAAAADRMFNILMG-DAVGPRKQFIKDHANDAEWVDI 639 >UniRef50_Q2FUD6 DNA gyrase subunit B n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FUD6_METHJ Length = 675 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 230/675 (34%), Positives = 362/675 (53%), Gaps = 50/675 (7%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDV 57 ++ TYN++ I++L GLEPVR RP MY +T +HL EV+DNS+DEALAG+ + V Sbjct: 6 LSNTYNSENIKILRGLEPVRERPAMYIGSTDSRGLHHLVYEVVDNSIDEALAGYCTHIQV 65 Query: 58 ILHADQSLEVIDDGRGMPVD-IHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 ++H D S+ V D+GRG+P+D + + A+E +L LHAGGKF YQ SGGLHGVG+ Sbjct: 66 VIHQDGSVSVEDNGRGIPIDPMKDNDNKTALETVLTVLHAGGKFDKNTYQVSGGLHGVGV 125 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGK------------------ 158 SVVNALS + V +DG Y + F G+ DL+ + Sbjct: 126 SVVNALSVELTATVWKDGYEYRMFFSRGQPQTDLEKKEEDFEEIKDRYIKRYGSLPDNCP 185 Query: 159 ------------RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 206 + +GT + F PD F++ F L H L+ A L G+ I+ DE Sbjct: 186 ETKEEFLNRYLSKISGTMIRFKPDSKIFETIEFDYDILAHRLRELAFLNSGITISIADER 245 Query: 207 ----NNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLW-LPEGGE 261 + + Y+ G+++Y+ + + E + + V+ + + Sbjct: 246 CEDLEECSEVFSYEGGISEYVRYLNHEAQPIHESVISFSRKDEEARVEVDIAFQYAAAYS 305 Query: 262 LLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVL 320 +YVN + T +GGTH+ G R L A+ + + + + L +D+ + ++ Sbjct: 306 EKVYTYVNSVNTKEGGTHLEGFRSALTKAINKMGKENKAIKDQNLSLKGDDVREGLTAII 365 Query: 321 SVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM 380 SV+M +PQF GQTK +L + + V +V + + ++ + + + A+ + Q R Sbjct: 366 SVRMANPQFEGQTKMKLGNSEVKGIVDSLVYASLCEYFEEHPKELAAIVDKAVLAYQARE 425 Query: 381 RAAKKV---VRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAI 437 A K RK LPGKLADC+ + ++E+++VEGDSAGGSAKQ RDR +QAI Sbjct: 426 AARKAKELARRKSTLESSGLPGKLADCSERSAEKSEIYIVEGDSAGGSAKQGRDRRFQAI 485 Query: 438 MPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-DDLSQLRYGKICILADADSDGL 496 +PL+GKILN + + ++L + E+ + AIG D+ + RY I I+ DAD DG Sbjct: 486 LPLRGKILNVEKATVHKILKNNEIQALISAIGTGVGESFDIEKARYHHIIIMTDADVDGA 545 Query: 497 HIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKG 556 HI+TLL F ++ + L++ G++Y+A PPLYRI GK+ YA TEEE + +L+++ + Sbjct: 546 HISTLLMTFFFRYLQPLIEAGYIYLAQPPLYRIAKGKQEKYAYTEEEMKEILQEMG--EK 603 Query: 557 KPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRR 616 NVQR+KGLGEMN QL TT+DP TR L ++ I ED + + + L+ RR Sbjct: 604 GVNVQRYKGLGEMNASQLWATTMDPETRVLKRVVI--EDAAYANEIFEKLMGDD-VTARR 660 Query: 617 NWLQEKGD-MAEIEV 630 ++++ + +++ Sbjct: 661 DFIKRHAKEVTNLDI 675 >UniRef50_P43703 DNA topoisomerase 4 subunit B n=456 Tax=Bacteria RepID=PARE_HAEIN Length = 632 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 483/632 (76%), Positives = 558/632 (88%), Gaps = 2/632 (0%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 MT Y+A I VL LEPV+ RPGMYTDTTRPNHL QEVIDNSVDEALAG A +++VILH Sbjct: 1 MTTNYSAQEITVLKDLEPVQIRPGMYTDTTRPNHLAQEVIDNSVDEALAGFATKIEVILH 60 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 DQS+EV D+GRGMPVDIHP EGV VE+IL +LHAGGKFSNKNY+F+GGLHGVGISVVN Sbjct: 61 PDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGISVVN 120 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS+RV++ V+R+G++Y IAFENG KV++L+++GTCG+R TGT VHF P+ +FDS +FS Sbjct: 121 ALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTIVHFKPNPKYFDSAKFS 180 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240 VSRL H+L+AKAVLC G+EI F D++NNT+ W Y+DGL+DYL EAVNG TLP+KPF+G Sbjct: 181 VSRLRHLLRAKAVLCSGLEIKFIDKVNNTQDIWLYEDGLSDYLIEAVNGFETLPKKPFVG 240 Query: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300 F G EAV WALLWLPEGGEL+ ESYVNLIPT+QGGTHVNGLRQGLLDA+REFCE+RN+ Sbjct: 241 EFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFCEFRNL 300 Query: 301 LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ 360 LPRGVKL+A+DIWDRC+Y+LS+KMQD QFAGQTKERLSSRQ A FVSGV+KDAF LWLNQ Sbjct: 301 LPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAFSLWLNQ 360 Query: 361 NVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGD 420 NVQ AE LAE+AISSAQRR+RAAKKVVRKKL SGPALPGKLADC +QDL +TELFLVEGD Sbjct: 361 NVQDAEKLAEIAISSAQRRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEKTELFLVEGD 420 Query: 421 SAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQL 480 SAGGSAKQARDREYQAI+PL+GKILNTWEVS D+VL S E+HDI+VA+GIDPDS+DLSQL Sbjct: 421 SAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIAVALGIDPDSNDLSQL 480 Query: 481 RYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALT 540 RYGK+CILADADSDGLHIATLLCALF++HF LV+ GHVYVA+PPLYRIDL KEV+YAL Sbjct: 481 RYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRIDLNKEVFYALD 540 Query: 541 EEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTD 600 E EKE +L++LK KKGKPNVQRFKGLGEMNP QLRETT+DPNTRRLVQLT D +DQ +D Sbjct: 541 ENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYDLGEDQGSD 600 Query: 601 --AMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 +MDMLLAKKRSEDR+NWLQ KGD ++ V Sbjct: 601 TLELMDMLLAKKRSEDRKNWLQAKGDQVDLSV 632 >UniRef50_Q9A0L0 DNA gyrase subunit B n=56 Tax=cellular organisms RepID=GYRB_STRP1 Length = 650 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 250/644 (38%), Positives = 380/644 (59%), Gaps = 22/644 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y+A I+VL GLE VR RPGMY +T +HL E++DNS+DEALAG A + V + Sbjct: 13 QEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVWEIVDNSIDEALAGFASHIKVFI 72 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 AD S+ V+DDGRG+PVDI + G PAVE + LHAGGKF Y+ SGGLHGVG SVV Sbjct: 73 EADNSITVVDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVV 132 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPR 178 NALS +++V V ++GQ++ F+ G V DL+V+GT T +VHF PD F ++ + Sbjct: 133 NALSTQLDVRVYKNGQIHYQEFKRGAVVADLEVIGTTDVTGT--TVHFTPDPEIFTETTQ 190 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 F S L ++ A L G++I+ D+ + E+ + Y+ G+ Y+ + + E Sbjct: 191 FDYSVLAKRIQELAFLNRGLKISITDKRSGMEQEEHFLYEGGIGSYVEFLNDKKDVIFET 250 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 P + + AV+ A+ + + S+ N I T +GGTH G R L + ++ + Sbjct: 251 PIYTDGELEGIAVEVAMQYTTS-YQETVMSFANNIHTHEGGTHEQGFRAALTRVINDYAK 309 Query: 297 YRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 IL L+ ED+ + V+SVK +PQF GQTK +L + + + + +AF Sbjct: 310 KNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTKLGNSEVVKITNRLFSEAFQ 369 Query: 356 LWLNQNVQAAELLAEMAISSAQRRMRAAK---KVVRKKLTSGPALPGKLADCTAQDLNRT 412 +L +N Q A + E I +++ R+ A + +K LPGKLADC++ D N+ Sbjct: 370 RFLLENPQVARKIVEKGILASKARIAAKRAREVTRKKSGLEISNLPGKLADCSSNDANQN 429 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 ELF+VEGDSAGGSAK R+RE+QAI+P++GKILN + + D++LA++E+ + A+G Sbjct: 430 ELFIVEGDSAGGSAKSGRNREFQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGF 489 Query: 473 D-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 D+S+ RY K+ I+ DAD DG HI TLL L + R +++ G+VY+A PP+Y + + Sbjct: 490 GADFDVSKARYQKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKV 549 Query: 532 GKEVYYAL-----TEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 G E+ + E++ + LE+ + KP VQR+KGLGEM+ QL ETT+DP R + Sbjct: 550 GSEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWETTMDPENRLM 609 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 ++T+D D D + DML+ R E RR++++E + +++ Sbjct: 610 ARVTVD--DAAEADKVFDMLMG-DRVEPRRDFIEENAVYSTLDI 650 >UniRef50_Q04WF3 DNA gyrase subunit B n=20 Tax=Bacteria RepID=Q04WF3_LEPBJ Length = 641 Score = 692 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 231/645 (35%), Positives = 361/645 (55%), Gaps = 26/645 (4%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 +Y+A I++L GLE VR+RPGMY T T + + EV+DNSVDEA+AGH + + + Sbjct: 6 TSYSASQIKILEGLEAVRKRPGMYIGTQDETGLHKMVYEVVDNSVDEAMAGHCTEIRISI 65 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + +EV D+GRG+PVDIHP++ + +E+++ LHAGGKF N Y+ SGGLHGVG+SVV Sbjct: 66 LPNNIIEVKDNGRGIPVDIHPDKKISTIEVVMTILHAGGKFENDAYKVSGGLHGVGVSVV 125 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS+ +EV V + G++Y +E G V +++ G +R GT V F PD T F + F Sbjct: 126 NALSEYLEVEVHQKGKIYTQKYEKGIPVSPVEIKGDSSER--GTIVRFKPDATIFTTVDF 183 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTE------QRWCYQDGLNDYLAEAVNGLPTL 233 L+ + A L G+ + +D E + + G+ ++ + Sbjct: 184 QFDILSARFRELAFLNKGLVLIVEDRRRGAEGENLLRNEFQFSGGIVSFVEHINENKHPM 243 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 K D + ++ + E + N I GGTH+ G R L + + Sbjct: 244 H-KVIHFERNKDDVLAEISIQYSETYTE-NIFCFTNNINNNLGGTHLEGFRAALTRTLND 301 Query: 294 FCEYRNILPRGVK--LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVK 351 F + L + LS ED+ + V+S+K+ PQF QTKE+L + + + + Sbjct: 302 FLKKDTTLSKKHPTGLSGEDVKEGLTAVISIKIPQPQFNSQTKEKLVNAEIKGIMQTLSS 361 Query: 352 DAFILWLNQNVQAAELLAEMAISS---AQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408 + L+ +N + + E I S + +A RK + G LPGKLADC+ +D Sbjct: 362 EGLTLFFEENPNITKKILEKCILSAKAREAARKARDLTRRKTVLEGGGLPGKLADCSEKD 421 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 +EL+LVEGDSAGGSAKQ RDR QAI+PLKGKILN + D++L+S+E+ + A+ Sbjct: 422 PAFSELYLVEGDSAGGSAKQGRDRNTQAILPLKGKILNVEKARLDKILSSEEIRILVSAL 481 Query: 469 GIDPD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 G +++++RY KI I+ DAD DG HI TLL F ++ R +++ G++YVA PPL Sbjct: 482 GTGIGEDEFNINKIRYHKIMIMTDADIDGSHIRTLLLTFFFRYMRPVIEKGYLYVAQPPL 541 Query: 527 YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 Y I GK YA +++EKE +L+ + +K +QR+KGLGEMNP QL ETT+DP+ R + Sbjct: 542 YLIKHGKNSTYAYSDKEKEELLKNVGTEK--VVIQRYKGLGEMNPEQLWETTMDPSNRVV 599 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK-GDMAEIEV 630 +++ +D D + ++L+ + R+ +++ +A +++ Sbjct: 600 LKVKLD--DFVEAEETFNILMG-DEVQPRKQFIEINAAKVANLDL 641 >UniRef50_C7M118 DNA gyrase subunit B n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M118_ACIFD Length = 647 Score = 688 bits (1776), Expect = 0.0, Method: Composition-based stats. Identities = 246/639 (38%), Positives = 345/639 (53%), Gaps = 20/639 (3%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILH 60 +Y A I VL GLE VR RPGMY +T +HL EV+DN+VDE +AG +DV + Sbjct: 15 SYTAADIVVLEGLEHVRLRPGMYIGSTGPSGLHHLVWEVVDNAVDEVMAGACTEIDVTIL 74 Query: 61 ADQSLEVIDDGRGMPVDIHP-EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 AD V D+GRG+PVD HP + A E++L +L+AGGKF Y+ SGGLHGVG+SVV Sbjct: 75 ADGGCRVEDNGRGIPVDPHPSDPSKSAAEVVLTQLNAGGKFGTGGYKVSGGLHGVGVSVV 134 Query: 120 NALSKRVEVNVRRDGQVYNIAF-ENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 NALS R+ + V RDG Y + F + G L+ +G+ G R GT V FWPD T F+ Sbjct: 135 NALSARLVLEVHRDGSTYRMEFVKGGTPTGPLERIGSSGGRR-GTVVTFWPDPTIFEDTE 193 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR--WCYQDGLNDYLAEAVNGLPTLPEK 236 FS R+ L+ A L GV + F+DE E + Y G+ D++ L K Sbjct: 194 FSAQRILERLQVIAFLNKGVVVRFRDERPGREHEQTFSYAGGIVDFVRHLNEPKGPLFAK 253 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 + + V+ A W E L ++ N I T +GG H G R+ L + + Sbjct: 254 VGYYAASEEDMEVEVAFSWNTTFYETLF-TFANGISTEEGGMHAEGFRKALTQVINRYAR 312 Query: 297 YRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 RN+L L DI + ++SV++ +PQF GQTK +L + +FV V + Sbjct: 313 ARNLLKERDENLEGNDIREGMTTIVSVRLVNPQFEGQTKTKLGNVSVRSFVERVTNEHLA 372 Query: 356 LWLNQNVQAAELLAEMAI---SSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412 WL +N + A+ + + AI + +A + RK LPGKL DCT++D + + Sbjct: 373 TWLEENPREAQAIVQKAIVAQRARLAARQARELTRRKSGLESAGLPGKLTDCTSRDPSES 432 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 ELF+VEG+SAGG+ + RD + QA++P++GKILN D++L++QE+ + AIG Sbjct: 433 ELFIVEGNSAGGTTIKGRDPKTQAVLPIRGKILNVERARLDKMLSNQEIQSLIAAIGAGV 492 Query: 473 D-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 D+ + RY K+ ILADAD DG HI TLL F + R LV+ G VY A PPLY L Sbjct: 493 GDEFDIKKARYHKVIILADADPDGSHIRTLLLTFFFRQMRPLVEAGMVYAAQPPLYSTLL 552 Query: 532 GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 G E Y E E+ LE K R KGLGEM+ +LR+TTL + R L+++TI Sbjct: 553 GTEKVYIKNEAERLRFLEAHPNHKKPFL--RLKGLGEMDFDELRDTTLHQDRRTLLKVTI 610 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIE 629 E D + +L+ E RR ++QE D I+ Sbjct: 611 --EQAAIADEVCSVLMGDD-VEQRRRFIQENAGDARFID 646 >UniRef50_P43053 DNA gyrase subunit B n=78 Tax=Bacteria RepID=GYRB_MYCHP Length = 648 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 246/646 (38%), Positives = 366/646 (56%), Gaps = 23/646 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 YNAD I++L GLE VR+RPGMY + +HL E++DNSVDEA+AG A + + L Sbjct: 8 HKYNADNIQILEGLEAVRKRPGMYIGSIGFKGLHHLLWEIVDNSVDEAMAGFATEIKIKL 67 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + + +EV D+GRGMP IH AVE IL LHAGGKF NY+ SGGLHGVG SVV Sbjct: 68 YPNNVIEVEDNGRGMPTGIHSGTKKSAVETILTVLHAGGKFDGSNYKVSGGLHGVGASVV 127 Query: 120 NALSKRVEVNVRRDGQVYNIAFEN-GEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 NALS EV V+RDG+++ F N G V+ L+V+G + TGT++ F PD T + Sbjct: 128 NALSSEFEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDYTIMEKEN 187 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 F + K A L G++IT ++ N + +C++ GL DY+ E G + + Sbjct: 188 FDFDTIIDHSKQIAYLNKGLKITVENVEKNIIKVFCFEGGLIDYVKELNKGKKLIVPEVI 247 Query: 239 IGNFA--------GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 G V+ A+ + E SY N I T+ GGTH G L+ Sbjct: 248 YAEGVFNDKNFTNGQDVIVEVAMQYN-EAYTNSIVSYANNIQTIDGGTHEQGFYDALVRI 306 Query: 291 MREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 + E + K++ ED+ + ++S+K DP F GQTK +L ++ + + Sbjct: 307 YNNYAETNKLFKTSSEKITREDVKEGLVAIISIKHTDPIFEGQTKGKLENKDARIATNKI 366 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQRRM---RAAKKVVRKKLTSGPALPGKLADCTA 406 + D+ +LN+N + A + E + S R+ +A + + LPGKLADC++ Sbjct: 367 LSDSLERYLNENPEIARAIIEKCLLSQHTRLLEIKAREASRKGNGLDLGNLPGKLADCSS 426 Query: 407 QDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 466 ++ ELF+VEG+SAGGSAK RDR QAI+PL+GK++N + S VL+++E+ + Sbjct: 427 KNAEIRELFIVEGNSAGGSAKMGRDRSIQAILPLRGKVINAEKNSFASVLSNKEIATMIH 486 Query: 467 AIGIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 A+G + D+++L+Y KI I+ DAD DG HI TLL F ++ + L+++G VY+A PP Sbjct: 487 ALGTGINTEFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYGFVYLAQPP 546 Query: 526 LYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 LY+I GK V YA + +KE ++ +L K +QR+KGLGEM+P QL ETT+DP TR+ Sbjct: 547 LYKITSGKNVEYAYNDLQKEQIMAKL-EDKRNVAIQRYKGLGEMDPEQLWETTMDPETRK 605 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 ++Q+ ID D D + L+ + E R +++QE A I++ Sbjct: 606 MLQVQID--DAAICDTVFATLMG-EEIEPRHDFIQENAKYANNIDI 648 >UniRef50_A5TY73 DNA gyrase subunit B n=542 Tax=Bacteria RepID=GYRB_MYCTA Length = 675 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 248/674 (36%), Positives = 372/674 (55%), Gaps = 54/674 (8%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y A +I +L GLE VR+RPGMY +T +HL EV+DN+VDEA+AG+A V+V+L Sbjct: 10 DEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGYATTVNVVL 69 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D +EV DDGRG+PV H G+P V++++ +LHAGGKF + Y SGGLHGVG+SVV Sbjct: 70 LEDGGVEVADDGRGIPVATHA-SGIPTVDVVMTQLHAGGKFDSDAYAISGGLHGVGVSVV 128 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS R+EV ++RDG ++ +E E + + + TG++V FW D F++ + Sbjct: 129 NALSTRLEVEIKRDGYEWSQVYEKSEPLG---LKQGAPTKKTGSTVRFWADPAVFETTEY 185 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEI--------------------------------N 207 + L+ A L G+ I DE Sbjct: 186 DFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHK 245 Query: 208 NTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESY 267 + + Y GL D++ + + G V+ A+ W E + ++ Sbjct: 246 VKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVH-TF 304 Query: 268 VNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQD 326 N I T +GGTH G R L + ++ + R +L + L+ +DI + A V+SVK+ + Sbjct: 305 ANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSE 364 Query: 327 PQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK- 385 PQF GQTK +L + + +FV V + W N A+++ A+SSAQ R+ A K Sbjct: 365 PQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKAR 424 Query: 386 --VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGK 443 V RK T LPGKLADC + D ++EL++VEGDSAGGSAK RD +QAI+PL+GK Sbjct: 425 ELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGK 484 Query: 444 ILNTWEVSSDEVLASQEVHDISVAIGIDP-DSDDLSQLRYGKICILADADSDGLHIATLL 502 I+N + D VL + EV I A+G D D+ +LRY KI ++ADAD DG HI+TLL Sbjct: 485 IINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADADVDGQHISTLL 544 Query: 503 CALFVKHFRALVKHGHVYVALPPLYRIDLGKEV-YYALTEEEKEGVLEQLKRKKGKPN-- 559 L + R L+++GHV++A PPLY++ + +A ++ E++G+LE + K N Sbjct: 545 LTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKE 604 Query: 560 --VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRN 617 +QR+KGLGEM+ +L ETT+DP+ R L Q+T+D D D + +L+ + + RR+ Sbjct: 605 DGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLD--DAAAADELFSILMGED-VDARRS 661 Query: 618 WLQEKG-DMAEIEV 630 ++ D+ ++V Sbjct: 662 FITRNAKDVRFLDV 675 >UniRef50_D0MI55 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Bacteria RepID=D0MI55_RHOM4 Length = 648 Score = 679 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 271/648 (41%), Positives = 393/648 (60%), Gaps = 21/648 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDV 57 + TY I+VL GLEPVR+RPGMY T +HL E++DN+VDEA+ G A ++V Sbjct: 4 LAATYTGKDIQVLEGLEPVRKRPGMYIGGTGKPGLHHLLWEIVDNAVDEAVNGFASLIEV 63 Query: 58 ILHADQ-SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 LHAD S+ V D+GRG+PVD HP + +P +ELIL LHAGGKF KNY SGGLHGVG Sbjct: 64 TLHADGRSVTVTDNGRGIPVDPHPVKKIPTLELILTTLHAGGKFDRKNYITSGGLHGVGA 123 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALS+ + V+RDG+ Y F G+ L+VV R TGTS++F PD F++ Sbjct: 124 SVVNALSEELVATVKRDGKTYQQRFVRGKPKTKLKVVAE-NTRGTGTSIYFRPDPEIFET 182 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVN--GLPTLP 234 F + L+ K L ++I FKDE + + ++ G+ +YLA V G + Sbjct: 183 TEFDPVWIREHLEIKTYLNRNLKIVFKDETSGERYEFHHEGGIVEYLARLVEEQGARVVH 242 Query: 235 EKPFIG--NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 +PF+ D ++ AL W E L +S+VN IPT +GGTH G ++ + A+R Sbjct: 243 PEPFVLIQEELRDGARLEVALQWTEAPRE-LIKSFVNGIPTTEGGTHEQGFKEAVRSAVR 301 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 + E ++LPR ++++A+DI + V+++ M +PQF GQTKE+L++ + + V G V+ Sbjct: 302 AYMETHDLLPRNLEVTADDIREGLVAVVNLFMVEPQFQGQTKEKLNNPEARSLVIGAVRL 361 Query: 353 AFILWLNQNVQAAELLAEMAIS----SAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQD 408 +LN + AE + I R A + ++ LPGKLADCT+ + Sbjct: 362 DLEQFLNAHPTMAEAIVARIIQAAKARLASRAAARSVRRQSSVSHRLNLPGKLADCTSTN 421 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 ELF+VEGDSAGGSAKQARDR +QA++PL+GK+LN + S +V ++E+ +I A+ Sbjct: 422 PEECELFIVEGDSAGGSAKQARDRRFQAVLPLRGKVLNAEQASLRKVEENKELSNIVQAL 481 Query: 469 GIDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 G DLS+LRY KI +L DADSDG HI TLL F ++ R L+++GHVYVA PPLY Sbjct: 482 GCGIGDKIDLSRLRYHKIILLMDADSDGHHITTLLLTFFYRYMRPLIENGHVYVAQPPLY 541 Query: 528 RIDLGKEVYYALTEEEKEGVLEQLKRKKG--KPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 RID GKE Y+AL + +++ +L++L++K+ + +QRFKGLGEM P LRETTLDP RR Sbjct: 542 RIDAGKETYWALDDADRDRILQELRKKRKNVQVEIQRFKGLGEMMPDTLRETTLDPRKRR 601 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE---IEV 630 L+++ I ++ T+ + L+ + R ++ E + ++V Sbjct: 602 LLRVEIPEDARLLTEQTITELMGRD-VSARFRFIMENAAQVDAEALDV 648 >UniRef50_Q94BZ7 DNA gyrase subunit B, mitochondrial n=83 Tax=cellular organisms RepID=GYRBM_ARATH Length = 732 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 230/645 (35%), Positives = 360/645 (55%), Gaps = 23/645 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 ++ Y+++ I+VL GL+PVR+RPGMY +T +HL E++DN++DEA AG+A +VDV+ Sbjct: 88 SKGYSSEQIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGYASKVDVV 147 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN--YQFSGGLHGVGI 116 LHAD S+ V+D+GRG+P D+HP ++E +L LHAGGKF + Y SGGLHGVG+ Sbjct: 148 LHADGSVSVVDNGRGIPTDLHPATKKSSLETVLTVLHAGGKFGGTSSGYSVSGGLHGVGL 207 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDL--QVVGTCGKRNTGTSVHFWPDETFF 174 SVVNALS+ +EV+V RDG + + G+ + L +V+ K GTS+ FWPD+ F Sbjct: 208 SVVNALSEALEVSVWRDGMEHKQNYSRGKPITTLTCRVLPLESKGTKGTSIRFWPDKEVF 267 Query: 175 DSP-RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ----RWCYQDGLNDYLAEAVNG 229 + F + + ++ A L P V I+ K E ++ E+ + + GL +Y++ Sbjct: 268 TTAIEFDHNTIAGRIRELAFLNPKVTISLKKEDDDPEKTQYSEYSFAGGLTEYVSWLNTD 327 Query: 230 LPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 + + + VD AL W + Y N I T+ GGTH+ G++ L Sbjct: 328 KNPIHD-VLGFRREINGATVDVALQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKASLTR 386 Query: 290 AMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + + + + + LS E + + ++SVK+ +P+F GQTK RL + + V Sbjct: 387 TLNTLAKKSKTVKEKDISLSGEHVREGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQ 446 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA---KKVVRKKLTSGPALPGKLADCT 405 V++ +L + E + ++++ + + A + V K + +LPGKLADC+ Sbjct: 447 SVQEYLTEFLELHPDILESIISKSLNAYKAALAAKRARELVRSKSVLKSSSLPGKLADCS 506 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 + D +E+F+VEGDSAGGSAKQ RDR +QAI+PL+GKILN + ++E+ ++ Sbjct: 507 STDPEVSEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLI 566 Query: 466 VAIGIDPDSDDLSQ--LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 + +G+ +D + LRY KI IL DAD DG HI TLL F ++ RAL G +YV + Sbjct: 567 LGLGLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGV 626 Query: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583 PPL++++ GK Y + + + + N+QRFKGLGEM P QL ETT++P T Sbjct: 627 PPLFKVERGKNAQYCYDDADLKKITSNFP-ANASYNIQRFKGLGEMMPEQLWETTMNPET 685 Query: 584 RRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEI 628 R L QL +D D + L+ R + R+ ++ + Sbjct: 686 RILKQLVVD--DIAEANMTFSSLMGA-RVDVRKELIKNAATRINL 727 >UniRef50_P0AES7 DNA gyrase subunit B n=740 Tax=root RepID=GYRB_ECO57 Length = 804 Score = 674 bits (1739), Expect = 0.0, Method: Composition-based stats. Identities = 215/571 (37%), Positives = 320/571 (56%), Gaps = 14/571 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVD 56 M+ +Y++ +I+VL GL+ VR+RPGMY T +H+ EV+DN++DEALAGH K + Sbjct: 1 MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEII 60 Query: 57 VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 V +HAD S+ V DDGRG+P IHPEEGV A E+I+ LHAGGKF + +Y+ SGGLHGVG+ Sbjct: 61 VTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALS+++E+ ++R+G+++ +E+G L V G K TGT V FWP F + Sbjct: 121 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK--TGTMVRFWPSLETFTN 178 Query: 177 -PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 F L L+ + L GV I +D+ + E + Y+ G+ ++ + Sbjct: 179 VTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHP 238 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 F + D V+ AL W +G + + N IP GGTH+ G R + + + Sbjct: 239 NIFYFSTEKDGIGVEVALQWN-DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 297 Query: 296 EYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 + + V + +D + V+SVK+ DP+F+ QTK++L S + + V + + Sbjct: 298 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 357 Query: 355 ILWLNQNVQAAELLAEMAIS---SAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411 +L +N A+++ I + + RA + RK LPGKLADC +D Sbjct: 358 AEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPAL 417 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN + D++L+SQEV + A+G Sbjct: 418 SELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG 477 Query: 472 PD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 + +LRY I I+ DAD DG HI TLL F + +V+ GHVY+A PPLY++ Sbjct: 478 IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKV 537 Query: 530 DLGKEVYYALTEEEKEGVLEQLKRKKGKPNV 560 GK+ Y +E + + + Sbjct: 538 KKGKQEQYIKDDEAMDQYQISIALDGATLHT 568 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 6/103 (5%) Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 I+ G+ + E+ L + + ++QR+KGLGEMNP QL ETT+DP +RR+++ Sbjct: 707 IERGERRQPVASFEQALDWLVK--ESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLR 764 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 +T+ +D D + L+ E RR +++E A I++ Sbjct: 765 VTV--KDAIAADQLFTTLMG-DAVEPRRAFIEENALKAANIDI 804 >UniRef50_C7QFM2 DNA gyrase subunit B n=8 Tax=Bacteria RepID=C7QFM2_CATAD Length = 661 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 250/650 (38%), Positives = 370/650 (56%), Gaps = 30/650 (4%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 YNAD+I VL GLE VR+RPGMY +T +HL E++DNSVDEA+AG+A ++V L A Sbjct: 18 YNADSISVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSVDEAMAGYADTIEVWLLA 77 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D ++V+D+GRG+PV I+ + G A+E+++ LHAGGKF + Y+ SGGLHGVG+SVVNA Sbjct: 78 DGGVKVVDNGRGIPVGINTKTGKSALEVVMTILHAGGKFGDGGYKVSGGLHGVGVSVVNA 137 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS RVEV V DG V+N +++G ++Q G +TGTS FW D F++ +S Sbjct: 138 LSSRVEVEVHTDGFVWNQVYKHGVPETEVQKGGPAA--DTGTSTIFWADVDIFETTVYSF 195 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEINNTEQR--------WCYQDGLNDYLAEAVNGL-PT 232 L+ + A L G+ I+ DE + + G+ D++ + Sbjct: 196 ETLSRRFQEMAFLNKGLTISLTDERPEFRDENGEQRSVKYHAEGGIADFVRHINSRKGEP 255 Query: 233 LPEKPFIGNFAGDT--EAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 + A + AL W + E ++ N I T GGTH G R L Sbjct: 256 VHPNVIDFEGEDKDRTLAAEIALQWNSQYSES-IYTFANNINTHGGGTHEEGFRAALTTL 314 Query: 291 MREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 + ++ + +L + L+ EDI + ++SVK+ +PQF GQTK++L + + FV + Sbjct: 315 INKYARDQKLLKEKDDNLAGEDIREGLTTIVSVKLAEPQFEGQTKDKLGNPEAKTFVQRL 374 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTA 406 V + WL +N A + I ++ RM A K RK L +LPGKL+DC + Sbjct: 375 VYEKLGEWLEENPNEAREVIRKTIQASTARMAARKARELTRRKGLLESSSLPGKLSDCQS 434 Query: 407 QDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 466 D +TE+F+VEGDSAGGSA+ RD QAI+P++GKILN + D+VL + EV + Sbjct: 435 NDPTKTEIFIVEGDSAGGSARSGRDPMTQAILPIRGKILNVEKARIDKVLQNTEVQALIS 494 Query: 467 AIGID-PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 A+G D D+S+LRY KI ++ADAD DG HI TLL L + + LV+ GHVY+A PP Sbjct: 495 ALGTGVHDDFDISRLRYHKIILMADADVDGAHINTLLLTLLFRFMKPLVEAGHVYLAAPP 554 Query: 526 LYRIDL-GKEVYYALTEEEKEGVLEQ---LKRKKGKPNVQRFKGLGEMNPMQLRETTLDP 581 LY++ + YA ++ E++ +LE +++ VQRFKGLGEMN +LR TT+D Sbjct: 555 LYKVKWTNNDFNYAYSDRERDQLLEAGVGAGKRRKDETVQRFKGLGEMNAEELRITTMDR 614 Query: 582 NTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 R L Q+T+D D + D + +L+ + E RRN++Q D+ +++ Sbjct: 615 EHRILRQVTLD--DAAQADDLFSVLMGED-VEARRNFIQRNAKDVRFLDI 661 >UniRef50_P34031 DNA gyrase subunit B n=54 Tax=Bacteria RepID=GYRB_SPICI Length = 640 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 227/646 (35%), Positives = 376/646 (58%), Gaps = 22/646 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDV 57 M YN+++I++L GLE +R+RPGMY T +HL E++DNS+DE LA A ++ + Sbjct: 1 MGDNYNSESIQILEGLEAIRKRPGMYIGATNARGLHHLVWEIVDNSIDEVLANFANKIKI 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 IL+ D+S+ VID+GRG+P++IHP+ V +E + LHAGGKF + Y+ SGGLHGVG S Sbjct: 61 ILNKDESITVIDNGRGIPIEIHPKTKVSTLETVFTILHAGGKFDSNTYKISGGLHGVGAS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKV-QDLQVVGTCGKRNTGTSVHFWPDETFF-D 175 VVNALSK ++V VR++ + Y + F NG ++ ++ VG+ + TGT+V F PDE F + Sbjct: 121 VVNALSKYLKVEVRKNNKKYVMEFHNGGQILTPIKEVGSTSE--TGTTVTFLPDEKIFKE 178 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR---WCYQDGLNDYLAEAVNGLPT 232 + FS S + + +K L G+EI+ D E++ + + +G+ DY+ E + T Sbjct: 179 TTIFSFSTIQNRIKQLVFLNKGLEISLVDLREEDEEKTVLYQFNNGIKDYVLELNKTIGT 238 Query: 233 LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 F D V++ L + E S+ N I T +GGTH G R ++ + Sbjct: 239 PLNDVFYVEGIEDNIVVEFGLQYNDNYSE-NIFSFCNNINTHEGGTHEEGARLAIVREIN 297 Query: 293 EFCEY---RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 + + +N K + +DI + ++S++ +PQ+ GQT ++L + + VS + Sbjct: 298 NYFKNQINKNNKGNEDKFTWDDIKEGMTIIISIRHPEPQYEGQTNQKLLNSEVKKIVSNI 357 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQR---RMRAAKKVVRKKLTSGPALPGKLADCTA 406 V +L +N + A+ + E S + RA + RK + +LPGKL+DC Sbjct: 358 VGKGLSSYLLENPEDAKKIIEKISLSLKATIVAQRAKEITRRKIVMDSFSLPGKLSDCET 417 Query: 407 QDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 466 +D EL++VEGDSAGGSAK R+R++QAI+PL+GKILN + ++ + E++ I Sbjct: 418 KDAKIAELYIVEGDSAGGSAKSGRNRKFQAILPLRGKILNVEKAKQIKIFENNEINSIIT 477 Query: 467 AIGIDP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 A+G D+ + +LRY K+ I+ DAD DG HI LL F ++ + L+++G++Y+A PP Sbjct: 478 ALGAGIKDNFNDKKLRYQKVIIMTDADVDGAHIRILLLTFFYRYMKDLIENGNIYIAQPP 537 Query: 526 LYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 LY+++ ++ Y ++ E E E+L ++ +QR+KGLGEMNP QL ETT+DP R Sbjct: 538 LYKVENSNQIRYVYSDNELELYKEELLKQNKNYTIQRYKGLGEMNPEQLWETTMDPERRL 597 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 L+++++++ + + + L+ + E R+ +++E ++V Sbjct: 598 LLKVSVNN--AFEANLICNELMG-ENVEPRKKFIRENAKYVKNLDV 640 >UniRef50_O51859 DNA gyrase subunit B n=208 Tax=Bacteria RepID=GYRB_VIBPA Length = 805 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 216/572 (37%), Positives = 317/572 (55%), Gaps = 15/572 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVD 56 M++ Y++ +I+VL GL+ VR+RPGMY T +H+ EV+DNS+DEALAGH K + Sbjct: 1 MSENYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCKDIV 60 Query: 57 VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 V +H D S+ V DDGRG+P ++HPEE V A E+I+ LHAGGKF + +Y+ SGGLHGVG+ Sbjct: 61 VTIHEDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 120 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALS++V + + R G ++ + +GE L VVG K TGT + FWP F + Sbjct: 121 SVVNALSEKVVLTIHRGGHIHTQTYRHGEPEAPLAVVGDTDK--TGTQIRFWPSAETFSN 178 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEIN-NTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 F L L+ + L GV I DE + + + Y+ G+ ++ + E Sbjct: 179 TEFHYDILAKRLRELSFLNSGVSIKLIDEREADKQDHFMYEGGIQAFVQHLNTNKTPIIE 238 Query: 236 KPFIGNFA-GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 K F + D +V+ A+ W +G + + N IP GGTH+ G R L + F Sbjct: 239 KIFHFDLEREDGISVEVAMQWN-DGFQENIFCFTNNIPQRDGGTHLAGFRAALTRTLNSF 297 Query: 295 CEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 + + S +D + V+SVK+ DP+F+ QTK++L S + + V + + Sbjct: 298 MDKEGFSKKAKTATSGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMGEK 357 Query: 354 FILWLNQNVQAAELLAEMAIS---SAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLN 410 +L +N A+++ I + + +A + RK LPGKLADC +D Sbjct: 358 LSEFLVENPSEAKMVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKDPA 417 Query: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 +EL++VEGDSAGGSAKQ R+R+ QAI+PLKGKILN + D++L+SQEV + A+G Sbjct: 418 LSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGC 477 Query: 471 DPD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR 528 + +LRY I I+ DAD DG HI TLL F + L++ G+VY+A PPLY+ Sbjct: 478 GIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYVYIAQPPLYK 537 Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNV 560 + GK+ Y EE L +V Sbjct: 538 VKKGKQEQYIKDEEAMNQYQVSLALDNASLHV 569 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 15/119 (12%) Query: 513 LVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPM 572 L++ G I G+ + E L + + QR+KGLGEMNP Sbjct: 701 LLEEG---------AYIKRGERTLPVSSFAEALEWLVK--ESMRGLSRQRYKGLGEMNPD 749 Query: 573 QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 QL ETT+DP TRR++Q+TI ED D + L+ + E RR++++E +A ++V Sbjct: 750 QLWETTMDPETRRMMQVTI--EDAVGADQLFTTLMG-DQVEPRRHFIEENALKVANLDV 805 >UniRef50_B6GDL9 DNA gyrase subunit B n=2 Tax=Collinsella RepID=B6GDL9_9ACTN Length = 674 Score = 670 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 246/675 (36%), Positives = 361/675 (53%), Gaps = 54/675 (8%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y + I+VL GLE VR RPGMY +T +HL E++DNSVDEA+AG +++V + Sbjct: 5 NEYGGNEIKVLEGLEAVRVRPGMYIGSTSSTGLHHLVWEIVDNSVDEAMAGFCTKIEVTV 64 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S+ V+D+GRG+PVD HP + +P +E+++ LHAGGKF N Y+ SGGLHGVG+SVV Sbjct: 65 HPDNSITVVDNGRGIPVDEHPVKKIPTLEVVMTILHAGGKFDNSAYKVSGGLHGVGVSVV 124 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALSK++ V VRRDG +Y + F G+ Q ++ +GT T + FWPDE F++ + Sbjct: 125 NALSKKMNVQVRRDGHIYEMEFSRGKTTQKMREIGTSETTGT--TTTFWPDEEIFETTVY 182 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEI--NNTEQRWCYQDGLNDYLAEAVNGLPTLP--E 235 L L+ A L ++I KDE + + +CY G+ D++ G + Sbjct: 183 DYDILRTRLQQTAFLNKNLKIVLKDERTADPLVEEFCYAGGIVDFVKFLNEGKTVPEGLK 242 Query: 236 KPFIGNFAGDT-------EAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288 P + + V+ A+ W E S+ N I T++GG H+ G R L Sbjct: 243 HPIYLSGESEPGAPVEKIGEVEVAIQWNTSYSE-NVVSFANDIRTIEGGMHMEGFRAALT 301 Query: 289 DAMREFCEYRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 + ++ NIL L+ +DI + V+SVK+ DPQF GQTK +L S Sbjct: 302 SVINDYARKNNILKEKEGNLTGDDIREGLTAVVSVKLADPQFEGQTKAKLGSSFMRTLTR 361 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAK---KVVRKKLTSGPALPGKLADC 404 VV + +L ++ + A + + A +++ R A K RK L +LPGKLADC Sbjct: 362 KVVSEGLADFLEEHPKQAREIIKKAQQASKARNAARKAREATRRKSLLETASLPGKLADC 421 Query: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 + +D TELF+VEGDSAGGSAK R R+ QAI+PL+GKILN V +S+ + + Sbjct: 422 SVRDAELTELFIVEGDSAGGSAKDGRRRDIQAILPLRGKILNVERVGDHRAFSSETIQSL 481 Query: 465 SVAIGIDP-------DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 AIG D+++ RY KI I+ DAD DG HI LL F K+ R L+ G Sbjct: 482 ITAIGCGVTTGNGDGGDFDITKARYHKIIIMTDADVDGAHIRILLLTFFYKYMRPLIDAG 541 Query: 518 HVYVALPPLYRIDLGKEVYYAL----------------------TEEEKEGVLEQLKRKK 555 +VYVA PP++ I + +++Y E + E ++ +K+ Sbjct: 542 YVYVACPPIFGIKVRNKIHYVYPNGRQAEDEILRDSIKALGLNPDEADDEQANGKVTKKR 601 Query: 556 GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDR 615 VQR+KGLGEM+P QL TT+DP TR L ++TI ED D + L+ + R Sbjct: 602 KGYTVQRYKGLGEMDPKQLASTTMDPKTRILQRVTI--EDAVVADRAVRELMGSE-VGYR 658 Query: 616 RNWLQEKGDMA-EIE 629 R ++++ A ++ Sbjct: 659 REYIEKHAHDARFLD 673 >UniRef50_P50074 DNA gyrase subunit B, novobiocin-resistant n=117 Tax=cellular organisms RepID=GYRBR_STRSH Length = 677 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 252/661 (38%), Positives = 367/661 (55%), Gaps = 38/661 (5%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 T +Y+A+AI VL GL+ VR+RPGMY +T +HL QE++DNSVDEALAG A R+DV Sbjct: 23 TASYDANAITVLDGLDAVRKRPGMYIGSTGERGLHHLVQELVDNSVDEALAGVADRIDVT 82 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 + AD + V+D+GRG+PV +HP E PAVE++L LHAGGKF Y SGGLHGVG+SV Sbjct: 83 VLADGGVRVVDNGRGIPVGMHPVEKRPAVEVVLTVLHAGGKFGGGGYGVSGGLHGVGLSV 142 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS R+ + DG + + +G L + TGTS+ FW D F++ Sbjct: 143 VNALSTRLSAEIWTDGHRWTQDYRDGAPTAPLARHEATSR--TGTSLTFWADGDIFETTE 200 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEI----------------NNTEQRWCYQDGLNDY 222 +S L + A L G+ +T DE + Y G+ D+ Sbjct: 201 YSFETLARRHQEMAFLNGGLTLTLTDERSSARATAAVDEADSDPTAKTVSYRYDGGITDF 260 Query: 223 LAEAVNGLPTLPEKPFIGNFAGDTEAV---DWALLWLPEGGELLTESYVNLIPTMQGGTH 279 + I A DTE + + AL W + + SY N I T +GGTH Sbjct: 261 VVHLNARKGEPAHPSVITIAAEDTERLLSAEIALQWNGQYTDS-VYSYANAIHTHEGGTH 319 Query: 280 VNGLRQGLLDAMREFCEYRNIL-PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLS 338 G R L + + + +L + LS EDI + ++SV + +PQF GQTK +L Sbjct: 320 EEGFRTALTTVVNRYAREKRLLRDKDANLSGEDIREGLTAIISVNVGEPQFEGQTKTKLG 379 Query: 339 SRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGP 395 + + + +V + W ++N A + A+ +A R+ A K RK L Sbjct: 380 NTEVRTLLQKIVHEHLADWFDRNPNEAVDIVRKAVQAATARVAARKARDLTRRKGLLETA 439 Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEV 455 ALPGKL+DC + D +E+F+VEGDSAGGSAK R+ +YQAI+P++GKILN + D+V Sbjct: 440 ALPGKLSDCQSNDPATSEIFIVEGDSAGGSAKAGRNPQYQAILPIRGKILNVEKARIDKV 499 Query: 456 LASQEVHDISVAIGID-PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV 514 L +QE + A G + D+++LRY KI ++ADAD DG HI+TLL + R LV Sbjct: 500 LQNQENQALISAFGTGVHEDFDIAKLRYHKIILMADADVDGQHISTLLLTFLFRFMRPLV 559 Query: 515 KHGHVYVALPPLYRIDLGKE-VYYALTEEEKEGVLE---QLKRKKGKPNVQRFKGLGEMN 570 + GHV+++ PPLY+I +E V YA ++ E+ +LE + R+ ++QRFKGLGEMN Sbjct: 560 EEGHVHLSRPPLYKIKWSREHVEYAYSDRERNTLLERGRRDGRRIRDDSIQRFKGLGEMN 619 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIE 629 +LR TT+DP+ R L Q+T+D D D + +L+ + E RR+++Q D+ ++ Sbjct: 620 AEELRVTTMDPDHRVLGQVTLD--DAAFADDLFSVLMGED-VEARRHFIQRNAQDVRFLD 676 Query: 630 V 630 + Sbjct: 677 I 677 >UniRef50_B7G298 Predicted protein n=3 Tax=cellular organisms RepID=B7G298_PHATR Length = 727 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 250/665 (37%), Positives = 350/665 (52%), Gaps = 41/665 (6%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 Q+Y A I VL GL+PVR+RPGMY +T +HL EV+DN VDEALAGHA V Sbjct: 63 AQSYGAGQITVLKGLDPVRKRPGMYIGSTGPDGLHHLVWEVVDNCVDEALAGHATFVTTT 122 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN----KNYQFSGGLHGV 114 +HAD SL V DDGRG+P D+H E G A+E +L LHAGGKF N Y+ SGGLHGV Sbjct: 123 IHADGSLTVTDDGRGIPTDLHSETGKSALETVLTELHAGGKFDNQGSNSGYKVSGGLHGV 182 Query: 115 GISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDL----QVVGTCGKRNTGTSVHFWPD 170 GISVVNALS+ V V V R ++Y + FE G L ++ KR +GTSV F PD Sbjct: 183 GISVVNALSEFVHVKVDRTPELYQMRFERGVPTGPLQNLDKLKTLLSKRKSGTSVTFLPD 242 Query: 171 ETFFD------SPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN----NTEQRWCYQDGLN 220 F F SRL + A L G+ +T KDE Q + + GL Sbjct: 243 LKVFKGDNGKPDITFDSSRLKGRMDEIAYLNAGLVLTLKDERKSPGRGRLQVFYHAGGLA 302 Query: 221 DYLAEAVNGLPTLPE------KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTM 274 +Y L + K D+ + D AL W + S+ N I T Sbjct: 303 EYAELLCRTKTPLFQGTTSSRKKKPARKQKDSASDDDALRWSSDMYAESILSFCNNIRTR 362 Query: 275 QGGTHVNGLRQGLLDAMREFCEYRNILPRGV-KLSAEDIWDRCAYVLSVKMQDPQFAGQT 333 GG+HV GL+ L + + + N G L E I + ++SV + +P+F GQT Sbjct: 363 DGGSHVEGLKACLTRTVNQAAKRSNKAKEGAANLPGEFIREGLTAIVSVSVSEPEFEGQT 422 Query: 334 KERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA---AKKVVRKK 390 K RL + + V ++ + + + + A S+ A V RK Sbjct: 423 KGRLGNPEVRPAVDSLLSAELTKLFDFRPEILDAIYNKASSAQAAAAAAKAARDMVRRKT 482 Query: 391 LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV 450 L + LPGKLADC ++D +E+F+VEGDSA GSAKQ RDR QAI+PL+GKILN Sbjct: 483 LLTSTILPGKLADCASRDPEESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIERA 542 Query: 451 SSDEVLASQEVHDISVAIGIDPD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVK 508 +++ + + E+ + A+G+ D LRYG+I I+ DAD DG HI LL F + Sbjct: 543 ATERIYQNTELQGLISALGLGVKGSEFDPKSLRYGRIVIMTDADVDGAHIRVLLLTFFYR 602 Query: 509 HFRALVKHGHVYVALPPLYRIDLG----KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFK 564 + R LV++GHVY+A PPLY++ +G ++ YA + E+ V+ Q GK ++QRFK Sbjct: 603 YQRELVENGHVYIAQPPLYKVSVGSGRSRKEGYAFNDTERNTVMMQ-ALAAGKVSLQRFK 661 Query: 565 GLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD 624 GLGEM P QL TT+DP R ++Q+T++ D D + +L+ R+ ++ + + Sbjct: 662 GLGEMMPEQLWSTTMDPERRTMLQVTVN--DASMADQTLSILMG-DTVAPRKEFISTQAE 718 Query: 625 MAEIE 629 ++ Sbjct: 719 TLRVD 723 >UniRef50_Q2NJM1 DNA gyrase subunit B n=5 Tax=Mollicutes RepID=Q2NJM1_AYWBP Length = 671 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 243/676 (35%), Positives = 370/676 (54%), Gaps = 54/676 (7%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + YNAD+I++L GLE VR+RPGMY +T +HL E++DNS+DEALAGHA + + + Sbjct: 2 KNYNADSIQILEGLEAVRKRPGMYIGSTAQKGLHHLVWEIVDNSIDEALAGHANNITLEI 61 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + + V D+GRG+PVDIHP+ G PAVE IL LHAGGKF + +Y+ SGGLHGVG SVV Sbjct: 62 LPGEIISVSDNGRGIPVDIHPKTGKPAVETILTTLHAGGKFDSSSYKVSGGLHGVGASVV 121 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPR 178 NALS V +R + Q+Y +E G V L+V+G KR GT++ F D F ++ Sbjct: 122 NALSNWFTVEIRLNKQIYFQKYEKGIAVSPLEVIGGTNKR--GTTIQFLSDPEIFQETTI 179 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTE--QRWCYQDGLNDYLAEAVNG-LPTLPE 235 ++ L ++ + L G+++ D+ E +C++ GL DY+ Sbjct: 180 YNFDTLKERMQQLSFLNKGLKLKIADKRYEKETVFNFCHEKGLQDYIDFINTSHKQIPFH 239 Query: 236 KPFIGNFAGDTEAVDWALLWLPE-------------------------GGELLTESYVNL 270 + F A + + + S+VN Sbjct: 240 EIFYLEKEAQKLAFEIVFEYTTQLRPTKKDEQGNEIEEKEDKDTIPRYTQSQKIFSFVNN 299 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFA 330 IPT +GGTH G + L + ++ + N+L + L +EDI + ++S+K QDPQF Sbjct: 300 IPTHEGGTHEEGFKLALTRVISKYAKEFNLLKKDEHLLSEDILEGITAIISLKHQDPQFE 359 Query: 331 GQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA--KKVVR 388 GQTK +L++ + S + + +L ++ Q + + + + SA R+ A ++VVR Sbjct: 360 GQTKAKLANTEVRQITSQLFGEFLEKYLLEHPQDSRKIIDKCLLSANARLAAKRAREVVR 419 Query: 389 KKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW 448 K KLADC ++D + +EL++VEGDSAGGSAKQ RD +QAI+PL+GK+LN Sbjct: 420 NKPLDSLGFASKLADCRSKDPHISELYIVEGDSAGGSAKQGRDSRFQAILPLRGKVLNVE 479 Query: 449 EVSSDEVLASQEVHDISVAIGIDPD-----SDDLSQLRYGKICILADADSDGLHIATLLC 503 + ++L ++E+ + AIG + ++ ++RY KI I+ DAD DG HI TLL Sbjct: 480 KSLDAKILTNKEIKSLIQAIGAGINIGKGKDFNVDKIRYHKIIIMTDADVDGAHIRTLLL 539 Query: 504 ALFVKHFRALVKHGHVYVALPPLYRIDLGKEV-YYALTEEEKEGVLEQLKRKKGKPNVQR 562 F +HFR L++ G++Y A PPLY+ GK Y E+ K+ + K G QR Sbjct: 540 TFFFRHFRELIEKGYIYFARPPLYKYQKGKGTPKYFYDEKTKQTFANKNSLKDG---FQR 596 Query: 563 FKGLGEMNPMQLRETTLDPNTRRLVQLTI--------DDEDDQRTDAMMDMLLAKKRSED 614 +KGLGEMNP QL ETT+DP R L++ ++ D+E TD +ML+ ++ Sbjct: 597 YKGLGEMNPNQLWETTMDPENRTLLKASLKDALNALSDEEALMETDQTFNMLMG-EKVLP 655 Query: 615 RRNWLQEKGDMAEIEV 630 R+N++ EK A+++V Sbjct: 656 RKNFILEKALEADLDV 671 >UniRef50_D0J983 DNA gyrase subunit B n=22 Tax=cellular organisms RepID=D0J983_BLASP Length = 642 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 235/644 (36%), Positives = 377/644 (58%), Gaps = 23/644 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y AD+I+ L G+E +R RP MY +HL EVIDNSVDE+LAG+ ++ V + Sbjct: 6 TDYTADSIQSLEGIEHIRLRPSMYIGDVGIRGLHHLVCEVIDNSVDESLAGYCNKIWVTI 65 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H + + V+D+GRG+P+DIH +EG A+E+++ ++ AGGKF +Y+ SGGLHGVGIS V Sbjct: 66 HKNGFITVLDNGRGIPIDIHKKEGKSALEVVMTKIGAGGKFDKNSYKVSGGLHGVGISCV 125 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALSKR+ V V R+G++Y + G + +Q +G + GT +H+ D + F+S + Sbjct: 126 NALSKRLIVTVYRNGKIYQQEYLRGTPIDRVQCLGETHLQ--GTKIHYLADNSIFNSITY 183 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 L+ LK A L G+ + KDE NN E+ + ++GL +YL+ +L Sbjct: 184 HYEILSTRLKELAFLNKGLHLFLKDERNNIEEDFFSKNGLKEYLSILDKNQESLIRNIIF 243 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF----C 295 + V+ A+ + E SYVN I T +GGTH++G R+ L +++ Sbjct: 244 IEGEKEDTIVEVAMQYNTSFKE-KIYSYVNNINTSEGGTHISGFRRALTRTFKKYTDGLL 302 Query: 296 EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 ++ V L+ +D + ++S+++ +PQF GQTK +LS+ + V +V + Sbjct: 303 SNKDNKKDKVDLTGDDFREGLTAIISIRVMEPQFEGQTKTKLSNHEVGGIVDKIVGEMLN 362 Query: 356 LWLNQNVQAAELLAEMAISS---AQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412 +L +N + + I S Q +A + + +K LPGKLADC+ + Sbjct: 363 SYLEENPSERRKIIDKVILSAKARQAAKKARELIQKKSPIYNSILPGKLADCSFNNPENC 422 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 E++LVEGDSAGG+AKQ RDR +QAI+PL+GKILN + ++ ++E+ +I ++G+ Sbjct: 423 EIYLVEGDSAGGTAKQGRDRSFQAILPLRGKILNVEKAMQYKIFENEEIRNIFTSLGVSI 482 Query: 473 DSD------DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 ++ ++ +LRY KI I+ DAD DG HI+TL+ LF ++ + L++ GH+Y+A PPL Sbjct: 483 GTEEDPKNLNVKKLRYNKIIIMTDADIDGSHISTLILTLFFRYMKPLIEKGHIYIATPPL 542 Query: 527 YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 Y I G YA ++EE+E +L++L R+K K N+QR+KGLGEMN QL ETT++P R L Sbjct: 543 YLIRKGNHSQYAWSDEEREKILQRLGRRK-KINIQRYKGLGEMNAEQLWETTMNPKKRTL 601 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 ++ I E+ D + +L+ + RR+++++ A+I+V Sbjct: 602 RKVHI--ENLSEADKIFSILMG-EEVPPRRSFIEKNAIHAKIDV 642 >UniRef50_A9KS52 DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Bacteria RepID=A9KS52_CLOPH Length = 642 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 224/647 (34%), Positives = 344/647 (53%), Gaps = 25/647 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + YN I VL GLE VR+RPGMY +T +HL E++DN +DE LAG ++++ L Sbjct: 2 EQYNGSQIVVLEGLEAVRKRPGMYIGSTGTRGLHHLIWEILDNGIDEHLAGFCNQLEITL 61 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D + + D GRG+PVDIHP + +P ++ LHAGGKF Y+ SGGLHGVG SVV Sbjct: 62 LKDGGISIADHGRGVPVDIHPTKKIPTARVVYTILHAGGKFGGSVYKVSGGLHGVGASVV 121 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEK------VQDLQVVGTCGKRNTGTSVHFWPDETF 173 NALS R+ V +RRDG++Y +E+G L VVG C K +TGT V F+PD T Sbjct: 122 NALSTRMIVEIRRDGKIYRDEYEHGGHPCVELENGMLPVVGKCNKSDTGTKVTFYPDPTI 181 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 F++ F +T LK A L + I F D+ ++ +C + G+ +++ + Sbjct: 182 FETVEFKAETITKKLKEVAFLNKNLSIVFYDQNTGFKKTYCEEFGIKSFVSYINREASVI 241 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 E+P V+ AL + E +Y N I + GGT V G + L M + Sbjct: 242 HEEPIYIEGKSGDIEVEVALQYTNSFSE-QINAYCNRINVVDGGTLVTGFKTALTRVMNQ 300 Query: 294 FCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 + +L + +DI + ++S+K DPQF GQTK +L + + V V Sbjct: 301 YARELGVLKEKDENFDGKDIRNGLVTIISIKHPDPQFEGQTKTKLGNTDAKSAVEDVFSG 360 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAK-KVVRKKLTSGPALPGKLADCTAQDLNR 411 + ++NV+ + + E ++ S R + K + K + KLA C+++ Sbjct: 361 EVTRFFDKNVEILKAILENSMRSYTARKASDKARSAVLKQLNDIDTKSKLASCSSKKPEE 420 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 E+++VEGDSAGG+ K AR+R QA++PL+GKI+N + + +++L + E+ + + G Sbjct: 421 CEVYIVEGDSAGGTVKTARNRRTQAVLPLRGKIINVEKATLEKILVNNEIKSMIASFGCG 480 Query: 472 PDS-DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI- 529 D+S+LRY KI IL DAD DG HI+TLL F + L+ G +Y LPPLYR+ Sbjct: 481 IGEDFDISKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPELIMEGKIYRGLPPLYRVE 540 Query: 530 ------DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583 K+ Y + E + + K ++QR+KGLGEM+ QL ETTL+P T Sbjct: 541 YETSEGKKKKKFEYIYNDFELDKFRK--NTKHKIIHIQRYKGLGEMDAEQLWETTLNPET 598 Query: 584 RRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 R L Q++I D D D +L++ RR ++ ++ A++++ Sbjct: 599 RVLAQVSITDTVD--ADETTTLLMS-NNVPPRRAFIMDEAKYAKLDI 642 >UniRef50_O67137 DNA gyrase subunit B n=13 Tax=cellular organisms RepID=GYRB_AQUAE Length = 792 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 236/588 (40%), Positives = 327/588 (55%), Gaps = 14/588 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y A+AI+ ++GLE VR RP MY +HL E++DN+VDEA+AG+A+ + V + Sbjct: 10 QEYTAEAIKAVSGLEHVRLRPAMYIGDIGERGLHHLIWEILDNAVDEAVAGYARNISVTI 69 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S+ V DDGRG+PVDIHPE G PAVE++ L AGGKF K Y +SGGLHGVG SVV Sbjct: 70 HRDNSVTVEDDGRGIPVDIHPETGKPAVEMVFTMLGAGGKFEKKVYTYSGGLHGVGASVV 129 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS+ + V V RDG++Y +AF+ GE V+ L VVG KR GT V F PD F++ Sbjct: 130 NALSEWLIVEVYRDGKIYRMAFKRGEVVEPLHVVGETKKR--GTKVSFKPDPEIFETTEI 187 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 + ++ A L P V+ DE + + G+ + + G L + Sbjct: 188 KFDIVEKRVRELAYLNPEVKFELTDERLGKHLIYKFDRGIEELVKYLNEGKEPLFKDIIR 247 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 + VD A ++ + E ES+VN I T++GGTHV G R GL A+ + Sbjct: 248 IQGEKEGVIVDIAFQYVKDYKE-RIESFVNNIKTVEGGTHVTGFRSGLSKAVIRMAQGLK 306 Query: 300 ILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWL 358 + + ED+ + V++ K+ +PQF GQTK +L ++ V + D + Sbjct: 307 LAKELKKSFTGEDVREGLTAVVACKVPNPQFEGQTKTKLGNQNVKQIVESITYDFLTSYF 366 Query: 359 NQNVQAAELLAEMAISSAQRRMRAAKKV---VRKKLTSGPALPGKLADCTAQDLNRTELF 415 + + + E AI +A R A K RK LPGKLADC+ D ++ E+F Sbjct: 367 EKKRDVLKAIVEKAIEAALAREAAKKAKELVRRKSPLEEGVLPGKLADCSETDPSKCEIF 426 Query: 416 LVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD 475 LVEGDSAGGSAKQARDR YQAI+PL+GKI+N + D+VL++ E+ I A+G D Sbjct: 427 LVEGDSAGGSAKQARDRRYQAILPLRGKIINVEKARIDKVLSNDEIKAIVSALGCGIGED 486 Query: 476 -DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKE 534 DL +LRY KI ++ DAD DG HI TLL F + LV+ G+VY+A PPLYR+ GK+ Sbjct: 487 LDLKKLRYHKIILMTDADVDGSHIRTLLLTFFYRFMPKLVEEGYVYIAEPPLYRVKKGKK 546 Query: 535 VYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Y ++E E L R+KG+ R K E +L +D Sbjct: 547 EIYIKDDKEFEHFLLNEIREKGRLVDAREK---EFKGEELVRLLIDLK 591 Score = 89.3 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 4/77 (5%) Query: 555 KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSED 614 + VQR+KGLGEMNP QL ETT++P TRRL ++ I ED D + +L+ ++ E Sbjct: 719 RSGMEVQRYKGLGEMNPEQLWETTMNPKTRRLKKVKI--EDAAEADRIFTILMG-EQVEP 775 Query: 615 RRNWLQEKGDMAE-IEV 630 RR +++ + ++V Sbjct: 776 RREFIEAYAKEVKHLDV 792 >UniRef50_UPI0001A7B046 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Arabidopsis thaliana RepID=UPI0001A7B046 Length = 693 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 231/685 (33%), Positives = 369/685 (53%), Gaps = 61/685 (8%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 ++ Y+++ I+VL GL+PVR+RPGMY +T +HL E++DN++DEA AG A ++DV+ Sbjct: 14 SKDYSSEHIQVLEGLDPVRKRPGMYIGSTGSRGLHHLVYEILDNAIDEAQAGFASKIDVV 73 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN--YQFSGGLHGVGI 116 LH+D S+ + D+GRG+P D+HP G ++E +L LHAGGKF K+ Y SGGLHGVG+ Sbjct: 74 LHSDDSVSISDNGRGIPTDLHPATGKSSLETVLTVLHAGGKFGGKSSGYSVSGGLHGVGL 133 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDL--QVVGTCGKRNTGTSVHFWPDETFF 174 SVVNALS+ +EV VRRDG + + G+ V L V+ + GT + FWPD+ F Sbjct: 134 SVVNALSEALEVIVRRDGMEFQQKYSRGKPVTTLTCHVLPPESRGTQGTCIRFWPDKEGF 193 Query: 175 ----DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR----WCYQDGLNDYLAEA 226 + +F + + ++ A L P V I+ K E ++ E+ + Y GL +Y++ Sbjct: 194 ALFTTAIQFDHNTIAGRIRELAFLNPKVTISLKKEDDDPERDVYSEYFYAGGLTEYVSWL 253 Query: 227 VNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 L + + VD +L W + Y N I T+ GGTH+ G++ Sbjct: 254 NTDKKPLHD-VLGFRKEINGSTVDVSLQWCSDAYSDTMLGYANSIRTIDGGTHIEGVKAS 312 Query: 287 LLDAMREFCEYRNILP---------------------------------RGVKLSAEDIW 313 L + + ++ + + LS E + Sbjct: 313 LTRTLNSLAKKLKVIKVKGYIIYSSPWIETKFKYSSALKRHALRTINNEKDISLSGEHVR 372 Query: 314 DRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI 373 + ++SVK+ +P+F GQTK RL + + V V++ +L + E + ++ Sbjct: 373 EGLTCIVSVKVPNPEFEGQTKTRLGNPEVRKIVDQSVQEYLTEYLELHPDVLESIISKSL 432 Query: 374 SSAQRRMRAA---KKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR 430 ++ + + A + V K + +LPGKLADC++ D +E+F+VEGDSAGGSAKQ R Sbjct: 433 NAYKAALAAKRARELVRSKSVLKSSSLPGKLADCSSTDPAESEIFIVEGDSAGGSAKQGR 492 Query: 431 DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQ--LRYGKICIL 488 DR +QAI+PL+GKILN + ++E+ ++ + +G+ +D ++ LRY KI IL Sbjct: 493 DRRFQAILPLRGKILNIERKDEAAMYKNEEIQNLILGLGLGVKGEDFNKENLRYHKIIIL 552 Query: 489 ADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVL 548 DAD DG HI TLL F ++ RAL G +YV +PPL++++ GK+ +Y + + + Sbjct: 553 TDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKIT 612 Query: 549 EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA 608 N+QRFKGLGEM P QL ETT++P+TR L QL +D D T+ + L+ Sbjct: 613 ASFP-GNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVD--DAAETNMVFSSLMG 669 Query: 609 KKRSEDRRNWLQEKG---DMAEIEV 630 R + R+ ++ ++ +++ Sbjct: 670 A-RVDVRKELIKSAATRMNLENLDI 693 >UniRef50_Q1V1K8 DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1V1K8_PELUB Length = 685 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 248/686 (36%), Positives = 380/686 (55%), Gaps = 63/686 (9%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 TY AD+I+VL GLE VR+RPGMY T +H+ EV+DNS+DEALAGH K +DV Sbjct: 5 STYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNIDVK 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 +++D ++ V DDGRG+PVD+H E + A E+I+ +LHAGGKF + +Y+ SGGLHGVG+SV Sbjct: 65 INSDGTITVRDDGRGIPVDMHKGEKMSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVGVSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS+++++ + RDG Y I F++G L+V+G + TGT + F P + F S + Sbjct: 125 VNALSEKLKLEIDRDGNRYFIEFKDGASKAPLKVIGKS--KETGTQITFLPSKEIFSSIK 182 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR--WCYQDGLNDYLAEAVNGLPT---- 232 F+ S + ++ A L G++IT D E+ + + G+ +++ Sbjct: 183 FTPSIIIKRMRELAFLNKGIKITVNDLNQKKEKIIVFKFDGGVLEFVDFLDEKREKLVNK 242 Query: 233 ----LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288 L +KP D ++ +L W GE Y N I GGTH+ G R L Sbjct: 243 TGNDLFKKPIYIEGKKDNIEIECSLKWNASYGED-IYPYTNNIYQKDGGTHLLGFRSALT 301 Query: 289 DAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 + ++ N+L + + +S +DI + V+S K+ DP+F+ QTK++L S + V Sbjct: 302 RVINKYATEHNLLKKNKLTISGDDIKEGLTCVISAKIPDPKFSSQTKDKLVSSEVRMIVE 361 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTSGPALPGKLADC 404 +V + +W +QN ++++ + +A R +A + V RK LPGKLADC Sbjct: 362 SIVSEKLSIWFDQNPTLSKIILAKVMQAALARDVARKARENVRRKGALELSGLPGKLADC 421 Query: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNT----------------- 447 TELF+VEGDSAGGSAKQ R+R QA++PL+GKILNT Sbjct: 422 QIGKQEGTELFIVEGDSAGGSAKQGRNRSNQAVLPLRGKILNTYVEEIVLKKNSNRDGSE 481 Query: 448 -WEVSSDEVLASQEVHDISVAIGIDPDSDDLS--QLRYGKICILADADSDGLHIATLLCA 504 S ++++S EV + A+G+DP +D+ LRYGKI I+ DAD DG HI LL Sbjct: 482 HRTKSLSKMMSSNEVVTLINALGLDPKVEDIDLKDLRYGKIIIMTDADVDGSHIRALLLT 541 Query: 505 LF-VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKR---------- 553 F K F L+++GHVY+A PPL++I+ G + Y E+E E + + + Sbjct: 542 FFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDEKELEDYILKNNKELQKIKKGTK 601 Query: 554 --------KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDM 605 +K + ++QRFKGLGEMNP +L TTLDP TR L+Q+ +D ++ ++ Sbjct: 602 EFTKAYEDEKSRMSIQRFKGLGEMNPEELWNTTLDPETRNLLQVQYS-KDIKKDQDLIHT 660 Query: 606 LLAKKRSEDRRNWLQEKG-DMAEIEV 630 L+ R++++ ++ +++ Sbjct: 661 LMGND-VALRKDFIVSNAINVQNLDI 685 >UniRef50_B8GXQ0 DNA gyrase subunit B n=17 Tax=cellular organisms RepID=GYRB_CAUCN Length = 805 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 225/580 (38%), Positives = 321/580 (55%), Gaps = 22/580 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDV 57 Y AD+I+VL GL+ VR+RPGMY T +H+ EV+DN++DEALAGHA +V V Sbjct: 7 AAQYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHATKVQV 66 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 IL+AD S+ V DDGRG+PVD+H EGV A E+I+ +LHAGGKF +Y+ SGGLHGVG+S Sbjct: 67 ILNADGSVTVTDDGRGIPVDMHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 126 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN---------TGTSVHFW 168 VVNALS +E+ + R+G+V+ + FE G+ V L+V G R TGT V F+ Sbjct: 127 VVNALSDWLELLIHRNGKVHQMRFERGDAVTSLKVTGDSPVRTEGPKAGETLTGTEVTFF 186 Query: 169 PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI--NNTEQRWCYQDGLNDYLAEA 226 P + F F L H L+ A L GV I FKD E++ Y+ G+ ++ Sbjct: 187 PSKDTFAFIEFDRKTLEHRLRELAFLNSGVTIWFKDHRDVEPWEEKLFYEGGIEAFVRHL 246 Query: 227 VNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 L + P D +D AL W E + N IP GGTH++ R Sbjct: 247 DKAKTPLLKAPIAVKGVKDKVEIDLALWWNDSYHE-QMLCFTNNIPQRDGGTHLSAFRAA 305 Query: 287 LLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 345 L + + E IL + V L ED + VLSVK+ DP+F+ QTK++L S + Sbjct: 306 LTRIITSYAESSGILKKEKVSLGGEDSREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPA 365 Query: 346 VSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLA 402 V G+V + W ++ A+ + +A R A K RK +LPGKLA Sbjct: 366 VEGLVSEGLSTWFEEHPNEAKAIVTKIAEAAAAREAARKARELTRRKSALDITSLPGKLA 425 Query: 403 DCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVH 462 DC+ +D ++E+F+VEGDSAGGSAKQAR+R+ QA++PL+GKILN D++L+S ++ Sbjct: 426 DCSERDPAKSEIFIVEGDSAGGSAKQARNRDNQAVLPLRGKILNVERARFDKMLSSDQIG 485 Query: 463 DISVAIGIDPD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 + A+G + ++RY KI ++ DAD DG HI TLL F + L++ G++Y Sbjct: 486 TLITALGAGIGRDDFNPDKVRYHKIVLMTDADVDGAHIRTLLLTFFYRQMPELIERGYIY 545 Query: 521 VALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNV 560 +A PPLY+ GK Y + E + L + ++ Sbjct: 546 IAQPPLYKASKGKSSRYLKDDAEMDAFLVDEGVDGAELDL 585 Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 + +QR+KGLGEMNP QL ETTLD R L+Q+ ++ DD D M L+ E Sbjct: 732 GRKGLTIQRYKGLGEMNPDQLWETTLDAEARTLLQVRVNHADD--ADDMFSRLMG-DLVE 788 Query: 614 DRRNWLQEKGDMAEIEV 630 RR ++QE AE++V Sbjct: 789 PRREFIQENALDAEVDV 805 >UniRef50_B6IVV7 DNA gyrase subunit B n=192 Tax=cellular organisms RepID=B6IVV7_RHOCS Length = 876 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 226/586 (38%), Positives = 313/586 (53%), Gaps = 28/586 (4%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDV 57 + Y A +I+VL GL+ VR+RPGMY T +H+ EV+DN++DEALAG+A RV+V Sbjct: 15 AEEYGASSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYADRVEV 74 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 L+AD S+ V D+GRG+PVDIHP EGV A E+I+ +LHAGGKF +Y+ SGGLHGVG+S Sbjct: 75 TLNADGSVTVRDNGRGIPVDIHPGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVS 134 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCG---------KRNTGTSVHFW 168 VVNALS+ + + V R G+V+ + F +G+ V L VG + TGT V F Sbjct: 135 VVNALSETLFLRVWRKGRVWEMTFRHGDAVAPLADVGAAPVVASGPRAGQPLTGTEVTFL 194 Query: 169 PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI--NNTEQRWCYQDGLNDYLAEA 226 P + F F L H + A L GV + F D Y+ GL ++ Sbjct: 195 PSKQTFTKTEFDFQTLEHRFRELAFLNSGVLLVFTDARGVEPKVTELFYEGGLEAFVQYL 254 Query: 227 VNGLPTLPEKPFIGNFA-----GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVN 281 L + G T V+ AL W E + N IP GGTH+ Sbjct: 255 DRSKAALHKPSIAMRGERVSDLGTTVTVEVALQWNDSYHESC-LCFTNNIPQRDGGTHLA 313 Query: 282 GLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR 340 G R L + ++ E IL + V LS +D+ + VLSVK+ DP+F+ QTK++L S Sbjct: 314 GFRAALTRTINKYAEESGILKKEKVALSGDDMREGLTCVLSVKVPDPKFSSQTKDKLVSS 373 Query: 341 QCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPAL 397 + V VV DA W ++ A + + +A R A + RK +L Sbjct: 374 EVRPVVETVVADALATWFEEHPADARRIVGKVVEAAAAREAARRARELTRRKGALDMASL 433 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLA 457 PGKLADC +D +ELF+VEGDSAGGSAKQ R R++QAI+PL+GKILN D++L+ Sbjct: 434 PGKLADCQERDPALSELFIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVERARFDKMLS 493 Query: 458 SQEVHDISVAIGIDPD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK 515 S E+ + A+G D + RY KI I+ DAD DG HI TLL F + AL++ Sbjct: 494 SAEIGTLIAALGTGIGREEFDPDKARYHKIIIMTDADVDGAHIRTLLLTFFYRQMPALIE 553 Query: 516 HGHVYVALPPLYRIDLGK-EVYYALTEEEKEGVLEQLKRKKGKPNV 560 G++Y+A PPLYR+ G + Y + + E L + Sbjct: 554 RGYLYIAQPPLYRVKRGTAKERYLKDDRQLEDYLIAQGTDDVTFTL 599 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 4/79 (5%) Query: 553 RKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRS 612 + + +QR+KGLGEMNP QL ETTLDP R L+Q+ + D + + L+ Sbjct: 801 QGRAGLAIQRYKGLGEMNPDQLWETTLDPANRTLLQVKVSHAD--EAEEVFSTLMG-DLV 857 Query: 613 EDRRNWLQEKG-DMAEIEV 630 E RR+++QE +A ++V Sbjct: 858 EPRRDFIQENALKVANLDV 876 >UniRef50_B1ZTK2 DNA gyrase subunit B n=194 Tax=cellular organisms RepID=B1ZTK2_OPITP Length = 861 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 218/579 (37%), Positives = 316/579 (54%), Gaps = 24/579 (4%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y+A I+ L GLE VR+RP MY T +H EV+DNSVDEALAG A + V Sbjct: 17 AEAYDASKIQKLEGLEGVRKRPDMYIGDTNERGLHHCVFEVVDNSVDEALAGFASLIVVT 76 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 +H D S + DDGRG+PVD+HP +PA+EL+L LHAGGKF YQ SGGLHGVG Sbjct: 77 IHLDGSCSIEDDGRGIPVDMHPVYKIPALELVLTNLHAGGKFGKGAYQVSGGLHGVGAKC 136 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP- 177 VNA+S+ E VRR G+VY + FE G Q +QV+G + TGT + F PD F + Sbjct: 137 VNAVSEWFEAEVRRGGKVYQMRFEQGITTQKMQVIG--DTKKTGTKITFKPDPEIFKTTR 194 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 F L+ L+ A L PGV I DE + R+ ++DG+ +++ + +KP Sbjct: 195 EFQYEILSKRLRELAFLNPGVHIELADERSQKGDRFYFRDGITEFVRYLNQNKNVVHDKP 254 Query: 238 FIGNFAGDTEA--------VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 + + E VD ++ + + +Y N I ++GGTH++G R L Sbjct: 255 ITFSDSVPNETNAALPNIVVDVSMQYNDSYND-QVFAYANSIYNIEGGTHLSGFRTALTR 313 Query: 290 AMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + F N+L + ++ +D+ + V+SVK+ +P+F GQTK +LS+ + V Sbjct: 314 VVNNFARANNLLKEKDPSITGDDVREGLVAVISVKVPEPRFEGQTKTKLSNGEIDGIVQR 373 Query: 349 VVKDAFILWLNQNVQAAELLAEMAIS--SAQRRMRAAKKVVRKKLTSGPALPGKLADCTA 406 +V + + N A+ + + ++ A+ R A++ VRK SG LPGKLADC+ Sbjct: 374 IVGEKLRFYFEANTNIAKRIIDKTLNAARAREAARKARETVRKGALSGGGLPGKLADCSE 433 Query: 407 QDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISV 466 +D EL++VEGDSAGGSAKQ RDR YQAI+PL+GK++N + D+VLA++E+ + Sbjct: 434 RDPALCELYIVEGDSAGGSAKQGRDRRYQAILPLRGKVINVEKARLDKVLANEEIRTLIT 493 Query: 467 AIGIDPDS------DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 A G D + RY K+ I+ DAD DG HI TLL + R L G VY Sbjct: 494 AFGTGIGDHEGDGAFDGDKARYHKVIIMTDADVDGSHIRTLLLTFLYRQMRGLFDRGFVY 553 Query: 521 VALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPN 559 +A PPLY+I K Y +++ +L +L + Sbjct: 554 IAQPPLYKIKRKKREQYIDNDDQLNRILLELGSEDVVLT 592 Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 4/88 (4%) Query: 544 KEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMM 603 E V E + ++QR+KGLGEMNP QL ETT+DP RRL++++I+ D + DA+ Sbjct: 777 LEIVTEIRANGRKGLSIQRYKGLGEMNPKQLFETTMDPEKRRLLKVSIN--DAAKADALF 834 Query: 604 DMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 +L+ RR ++++ ++ ++V Sbjct: 835 TLLMG-DEVPPRRQFIEDNALNVQYLDV 861 >UniRef50_B9ZQ26 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ26_9GAMM Length = 650 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 249/647 (38%), Positives = 363/647 (56%), Gaps = 22/647 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y +++I+VL GLEPVR+RPGMY T HL E++DN+VDEA+AGH ++V+ Sbjct: 8 ARQYTSESIQVLEGLEPVRKRPGMYIGGTDSSGLRHLLNEILDNAVDEAIAGHGDEIEVV 67 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 H D S V D+GRG+P+D+H E+G+ A L++ LHAGGKF N Y+ SGGLHGVG +V Sbjct: 68 FHQDGSYSVNDNGRGIPIDMHREKGMHAAALLVTTLHAGGKFDNAAYKVSGGLHGVGAAV 127 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSP 177 NA+S R ++++RRDGQ Y F G D + TGT + FWPD F + Sbjct: 128 TNAMSTRFDMDIRRDGQRYQQTFTEGGAPSD-PEIKRYTGSYTGTLIRFWPDLARFDEDA 186 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFK------DEINNTEQRWCYQDGLNDYLAEAVNGLP 231 + +K A L PG++++ + + + ++ +V+ Sbjct: 187 EIDFDFMADRMKRTAYLVPGLQLSIREEVASEGGDEPRQAVFRFESFSQIIEDLSVDSGD 246 Query: 232 TLPEKPFIGNFAGDTEAVDWALLWLPEGGE---LLTESYVNLIPTMQGGTHVNGLRQGLL 288 + E + + + E + Y N+IPT GTH+ GLR+ + Sbjct: 247 AISEIIEADSAEHIDGQGEIEVAVALRWHERNRTVLAGYANIIPTAD-GTHMTGLRKAVT 305 Query: 289 DAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 A+ + E N+L +L +DI ++V++ DP F GQTKE+L + VS Sbjct: 306 QAVNNYAEANNLLRGNQELKGDDIQAGLIAAVAVRLADPLFQGQTKEKLKNGPVTGVVSR 365 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAK----KVVRKKLTSGPALPGKLADC 404 ++ A +N + A + E A + + R A K V RK + S ALPGKLADC Sbjct: 366 AIRAALDHAFEENPKMARAIVEKAKLAQKAREAADKAAEMVVNRKSVISATALPGKLADC 425 Query: 405 TAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 QD +++ELF+VEGDSAGGSAK R+REYQAI+PLKGKILNT+ +VL S EV ++ Sbjct: 426 QEQDPSKSELFIVEGDSAGGSAKSGREREYQAILPLKGKILNTYRADPAKVLKSDEVKNL 485 Query: 465 SVAIGIDPDS-DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 +A+G P S DL +LRY +I ILADADSDG HIATL+ F + L++ G+VY+AL Sbjct: 486 MLALGCGPKSHFDLEKLRYHRIVILADADSDGHHIATLVLTYFHTNAPELIESGYVYIAL 545 Query: 524 PPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583 PPLYR+ GK+ Y + E E + Q K K VQRFKGLGEMN QL E +DP T Sbjct: 546 PPLYRVRKGKQSAYLKDDRELEAFMAQQKNPD-KWQVQRFKGLGEMNAEQLWEAAMDPET 604 Query: 584 RRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 RR+ ++ ++ + + + ++L+ + RR +++E + A I+V Sbjct: 605 RRIARVQYSEQGREGDNEVFEVLMGAE-VPPRRAFIEEYAEKAVIDV 650 >UniRef50_B6BRC2 DNA gyrase subunit B n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BRC2_9RICK Length = 686 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 253/688 (36%), Positives = 383/688 (55%), Gaps = 64/688 (9%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDV 57 TY AD+I+VL GLE VR+RPGMY T +H+ EV+DNS+DEALAGH K ++V Sbjct: 4 KNTYQADSIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVYEVVDNSIDEALAGHCKNINV 63 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 +++D ++ V DDGRG+PVD+H E A E+I+ +LHAGGKF + +Y+ SGGLHGVG+S Sbjct: 64 RINSDGTITVNDDGRGIPVDMHKGEKKSAAEVIMTQLHAGGKFDHDSYKVSGGLHGVGVS 123 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS+++++ + RDG+ + I F+NGE + L++VG +N+GT + F P + F S Sbjct: 124 VVNALSEKLKLEINRDGKKHFIEFKNGEAIAPLKIVGKS--KNSGTQITFLPSKEIFSSI 181 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ--RWCYQDGLNDYLAEA--------V 227 +FS + L ++ A L G++I F D E+ + + G+ +++ Sbjct: 182 KFSANILIKRMRELAFLNKGIKIIFTDASLKKEKVSEFKFDGGVLEFVNFLDEKREKLQN 241 Query: 228 NGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 L +KP D ++ +L W E Y N I GGTH+ G R L Sbjct: 242 KNGNDLFKKPIYIEGKKDNIELECSLKWNASYAED-IFPYTNNIFQKDGGTHLLGFRSAL 300 Query: 288 LDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 + ++ N+L + + +S +DI + VLS K+ DP+F+ QTK++L S + V Sbjct: 301 TRVVNKYANEHNLLKKNKLAISGDDIKEGLTCVLSTKIPDPKFSSQTKDKLVSSEVRMIV 360 Query: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTSGPALPGKLAD 403 VV + +W +QN A+++ I +A R +A + V RK LPGKLAD Sbjct: 361 ETVVNEKLSIWFDQNPSVAKIILAKVIQAAMARDVARKARENVRRKGALELSGLPGKLAD 420 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNT---------------- 447 C TELF+VEGDSAGGSAKQ R+R QA++PL+GKILNT Sbjct: 421 CQIGKQEGTELFIVEGDSAGGSAKQGRNRANQAVLPLRGKILNTYVEDLSVKKNGNGDAS 480 Query: 448 ---WEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLL 502 + ++++S E+ + A+G+DP + DL LRYGKI I+ DAD DG HI LL Sbjct: 481 EQQRTKALSKMISSNEIVTLINALGLDPKTQEIDLKDLRYGKIIIMTDADVDGSHIRALL 540 Query: 503 CALF-VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKE---------------- 545 F K F L+++GHVY+A PPL++I+ G + Y E E E Sbjct: 541 LTFFNNKPFNKLIENGHVYLAQPPLFKINKGTKGIYIKDELELENYIVKNSKELKKIKKG 600 Query: 546 --GVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMM 603 +++L+ +K K N+QRFKGLGEMNP +L TTLDP R L+Q+ +D ++ +++ Sbjct: 601 SKEYIKELELEKSKMNIQRFKGLGEMNPEELWSTTLDPENRNLLQVQYS-KDLKKDQSLI 659 Query: 604 DMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 L+ R++++ ++ +++ Sbjct: 660 HTLMGND-VALRKDFIISNAINVQNLDI 686 >UniRef50_Q9Z8R3 DNA gyrase subunit B n=80 Tax=cellular organisms RepID=GYRB_CHLPN Length = 805 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 218/629 (34%), Positives = 336/629 (53%), Gaps = 35/629 (5%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y+A AI VL GL+ VR RPGMY T +HL EV+DNS+DEA+AG+ R+DV + Sbjct: 6 KNYDASAITVLEGLQAVRERPGMYIGDTGITGLHHLVYEVVDNSIDEAMAGYCSRIDVRI 65 Query: 60 HADQSLEVIDDGRGMPVDIHPEE------GVPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 D + ++D+GRG+P+++H E V A+E++L LHAGGKF +Y+ SGGLHG Sbjct: 66 LEDGGIVIVDNGRGIPIEVHERESAKQGREVSALEVVLTVLHAGGKFDKDSYKVSGGLHG 125 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF 173 VG+S VNALS+++ V +D + Y + F G V LQ V ++ GT + F+PD Sbjct: 126 VGVSCVNALSEKLVATVFKDKKCYQMEFSRGIPVTPLQYVSVSDRQ--GTEIVFYPDPKI 183 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLNDYLAEAVNGLP 231 F + F S L L+ A L G+ I F+D+ + + + Y+ G+ +++ Sbjct: 184 FSTCTFDRSILMKRLRELAFLNRGITIVFEDDRDVSFDKVTFFYEGGIQSFVSYLNQNKE 243 Query: 232 TLPEKPFIGNFAGDTEAVDW----ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 +L +P + + AL W G L SY N IPT QGGTH+ G L Sbjct: 244 SLFSEPIYICGTRVGDDGEIEFEAALQWN-SGYSELVYSYANNIPTRQGGTHLTGFSTAL 302 Query: 288 LDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 + + + N+ + L+ EDI + V+SVK+ +PQF GQTK++L + ++ Sbjct: 303 TRVINTYIKAHNLAKNNKLALTGEDIREGLTAVISVKVPNPQFEGQTKQKLGNSDVSSVA 362 Query: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV---RKKLTSGPALPGKLAD 403 VV +A ++ +N Q A ++ + +AQ R A K RK LPGKL D Sbjct: 363 QQVVGEALTIFFEENPQIARMIVDKVFVAAQAREAAKKARELTLRKSALDSARLPGKLID 422 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C +D + E+++VEGDSAGGSAKQ RDR +QAI+P++GKILN + ++ +QE+ Sbjct: 423 CLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARLQKIFQNQEIGT 482 Query: 464 ISVAIGIDPD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYV 521 I A+G + +LS+LRY +I I+ DAD DG HI TLL F +H AL+++ VY+ Sbjct: 483 IIAALGCGIGADNFNLSKLRYRRIIIMTDADVDGSHIRTLLLTFFYRHMTALIENECVYI 542 Query: 522 ALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKP----NVQRFKGLGEMNPMQLRET 577 A PPLY++ K+ Y L+E+E + L L + + +G + E+ Sbjct: 543 AQPPLYKVSKKKDFRYILSEKEMDSYLLMLGTNESSILFKSTERELRG-------EALES 595 Query: 578 TLDPNTRRLVQLTIDDEDDQRTDAMMDML 606 ++ + ++ ++M Sbjct: 596 FINVILDVESFINTLEKKAIPFSEFLEMY 624 Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%) Query: 536 YYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDED 595 Y T EE L+ L RK +QR+KGLGEMN QL +TT++P R L+ +++ +D Sbjct: 713 YSCYTLEEVINYLKNLGRKG--IEIQRYKGLGEMNADQLWDTTMNPEQRTLIHVSL--KD 768 Query: 596 DQRTDAMMDMLLAKKRSEDRRNWLQEKGD---MAEIEV 630 D + ML+ + RR +++ + +++ Sbjct: 769 AVEADHIFTMLMG-EEVPPRREFIESHALSIRINNLDI 805 >UniRef50_C1DUC4 DNA gyrase subunit B n=5 Tax=Bacteria RepID=C1DUC4_SULAA Length = 809 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 238/653 (36%), Positives = 355/653 (54%), Gaps = 37/653 (5%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+A+AI+ +TGL+ VR RP MY +HL E++DN+VDEA+AG+AK + VI+H Sbjct: 10 EYSAEAIQAVTGLDHVRARPAMYIGDIGERGLHHLVWEILDNAVDEAMAGYAKNITVIIH 69 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 D S+ V DDGRG+PVDIHPE +PAVE++ L AGGKFS K YQ+SGGLHGVG SVVN Sbjct: 70 QDGSVTVEDDGRGIPVDIHPEFKIPAVEMVFTILGAGGKFSKKAYQYSGGLHGVGASVVN 129 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS + V V R+G++Y + G+ V L+VVG KR GT V F PD++ F++ Sbjct: 130 ALSSWLVVEVYRNGKIYRQEYSYGKPVYPLKVVGDTTKR--GTKVTFKPDDSIFETTTIK 187 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240 + ++ A L PGV DE + ++ + +++G+ D++ L ++ Sbjct: 188 FDIIQKRVRELAFLNPGVRFVVIDERKDIKEEFYFENGIVDFVRVLNQAKEPLFDEVIYV 247 Query: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300 D V+ A + E + ES+VN I T++GGTHV+G R L +M + + Sbjct: 248 KGEKDGVLVEVAFQYTKSYNE-VIESFVNNIKTVEGGTHVSGFRAALTRSMNKTLSGMKL 306 Query: 301 LPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLN 359 +S +D+ + V+SVK+ +PQF GQTK +L ++ V VV D + + Sbjct: 307 PKELKSGVSGDDLREGLTAVISVKVPEPQFEGQTKTKLGNQDVKRIVESVVGDYLLEYFE 366 Query: 360 QNVQAA---ELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFL 416 +N A A A + + +A + RK +LPGKLADC+ D ELF+ Sbjct: 367 KNKDIALKIAEKAIEAAIAREAARKAKEISRRKSFLEDSSLPGKLADCSESDPQLCELFI 426 Query: 417 VEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD--- 473 VEG+SAGGSAKQ RDR QAI+PLKGKILN + D++L+++E+ I AIG Sbjct: 427 VEGESAGGSAKQGRDRRTQAILPLKGKILNVEKARIDKILSNEEIRAIVNAIGTGIGLPI 486 Query: 474 -----------SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVA 522 DLS+LRY KI ++ADAD DG HI TLL LF + F ++++GH+Y+A Sbjct: 487 KSEDEEKKEDEGFDLSKLRYHKIILMADADVDGSHITTLLLTLFYRFFPQIIENGHLYIA 546 Query: 523 LPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE-TTLDP 581 PPLY++ G+ Y +EE ++ + + F + QL++ L Sbjct: 547 QPPLYKLKKGRSEIYVKDDEELSKIVIDFATDEIAIEGKNF------SKSQLKDIAKLSK 600 Query: 582 NTRRLVQLTIDDEDDQRTDAMMDMLL------AKKRSEDRRNWLQEKGDMAEI 628 + L + +D D ++ + L K + ++ +L++K EI Sbjct: 601 EYKNLKESLYKRKDKVVIDTLLSLNLTEDDIRNKGKVKEVVEFLRQKLPSYEI 653 Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 6/105 (5%) Query: 527 YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 I ++ ++ V+ + VQR+KGLGEMNP QL ETT++P TRRL Sbjct: 710 VEISYKQKSIKVEDLDDLYDVIFEAG--MSGCEVQRYKGLGEMNPEQLWETTMNPKTRRL 767 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 +Q+TI ED D + +L+ ++ E RR ++ + +++ Sbjct: 768 LQVTI--EDAALADEVFSILMG-EKVEPRREFIMKYAKEVRNLDI 809 >UniRef50_Q2S2H3 Type II DNA topoisomerase, B subunit n=3 Tax=Bacteria RepID=Q2S2H3_SALRD Length = 643 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 261/646 (40%), Positives = 378/646 (58%), Gaps = 19/646 (2%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDV 57 M TY + I+VL GLEPVR+RPGMY T +H+ EV+DN+VDEA G+A R++V Sbjct: 1 MPTTYTGEDIDVLEGLEPVRKRPGMYIGGTGRPGLHHILWEVVDNAVDEATNGYASRIEV 60 Query: 58 ILHADQ-SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 +LH D S+ V D+GRG+PVD HPE+GVP V+LIL LH+GGKF NY SGGLHGVG+ Sbjct: 61 VLHEDGESISVSDNGRGIPVDDHPEKGVPTVQLILTTLHSGGKFDGSNYITSGGLHGVGV 120 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALS+ + V+RDGQ Y F G V L R TGT ++F PD F+S Sbjct: 121 SVVNALSEELVATVKRDGQEYQQRFRQGTPVTGL-DTTKESARGTGTDIYFRPDPDIFES 179 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGL--PTLP 234 F S + L K L ++I F+DE +N ++ G+ +YL V L + Sbjct: 180 VEFDPSWIREHLDVKTYLNRDLKIIFRDETSNERYELHHEGGIQEYLDYLVEDLQVSPIH 239 Query: 235 EKPFIGNFAGDTEAV--DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 + F+ + AL W E ++VN IPT GGTH GL+ G+ +R Sbjct: 240 DDVFMMEDDDLDGDGRLEIALQWTDAPKE-QLHTFVNGIPTEDGGTHEQGLKSGIRAVIR 298 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 F + +++P +++ +D + ++++ DPQF GQTK++L++ + VSG ++ Sbjct: 299 SFMDTHDLVPHRLEIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNPSVRSQVSGALRT 358 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA----LPGKLADCTAQD 408 +LN + E +A + +A+ R SG LPGKLADC++ Sbjct: 359 ELEQYLNDHSSTGEAIASRVVQAAKARRARRSASGGSSGRSGSKSRLQLPGKLADCSSST 418 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 + ELF+VEGDSAGGSAKQARDRE QA++PL+GK+LN + + D V ++E+ +I A+ Sbjct: 419 PSECELFIVEGDSAGGSAKQARDRETQAVLPLRGKVLNAEQATLDRVQNNKELSNIVQAL 478 Query: 469 GIDPDS-DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 G DLS LRY K+ +L DADSDG HIATLL F ++ R L++ G V++A PPLY Sbjct: 479 GCGIGDALDLSDLRYRKVILLMDADSDGHHIATLLLTFFYRYMRPLIEGGFVHIAQPPLY 538 Query: 528 RIDLGKEVYYALTEEEKEGVLEQLKRKKG--KPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 RI+ GKE ++AL E +KE +L++++ ++QRFKGLGEM P L ETTL P RR Sbjct: 539 RIEAGKETHWALDEPDKEQILDEIRSDGRNPNVDIQRFKGLGEMMPDTLNETTLSPEGRR 598 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK-GDMAEIEV 630 L++++I D + T+ + L+ + S R ++ + + E++V Sbjct: 599 LLEVSIPDTERMVTEQTITELMGRDSSA-RFKFIMQHAAEADELDV 643 >UniRef50_A3EQC0 DNA gyrase subunit B n=7 Tax=Bacteria RepID=A3EQC0_9BACT Length = 818 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 210/557 (37%), Positives = 310/557 (55%), Gaps = 12/557 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y A+ I VL GLE VR RPGMY +T +HL E++DNSVDEALAGH + + + Sbjct: 9 EEYTAEHIRVLEGLEAVRVRPGMYIGSTGIDGLHHLVYELVDNSVDEALAGHCSEIHITI 68 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D+S+ V D+GRG+P +H E+ A E++L LHAGGKF+N Y+ SGGLHGVG+SVV Sbjct: 69 HPDRSVTVADNGRGIPTGMHAEQKRSAAEVVLTVLHAGGKFNNNLYKVSGGLHGVGVSVV 128 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS+ + + + ++G ++ + G L V G +R GT + FWPD T ++ +F Sbjct: 129 NALSETLFLEIHQNGLIHRQTYHKGTPDAPLAVFGETTQR--GTIIRFWPDMTIMETDQF 186 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 S L H + A L P + I KDE E+ + ++ G+ +++ TL + F Sbjct: 187 SFDTLAHRFRELAFLNPVLTIHLKDEETLREETFHFEGGVQSFVSFLNENKKTLHDVLFF 246 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 D + A + + N I T +GGTHV G R + + F + Sbjct: 247 RKTLEDGSQFEVAFQYQESTENETVLGFANNIHTREGGTHVRGFRTAITKTINRFIREKQ 306 Query: 300 ILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLN 359 + G ++ ED+ + ++SV++ PQF GQTK +L S A + + +A Sbjct: 307 LNK-GEEVRGEDVREGLTGIISVRIPGPQFEGQTKAKLGSSWVAGAMESFLSEALQEKFE 365 Query: 360 QNVQAAELLAEMAISSAQRRMRAAKKV---VRKKLTSGPALPGKLADCTAQDLNRTELFL 416 ++ A+ +AE A+ +AQ R A K RK + G LPGKLADC D ++EL++ Sbjct: 366 EDPLTAKKIAEKAVLTAQAREAARKAKDLAKRKNVLEGSNLPGKLADCQESDPAKSELYI 425 Query: 417 VEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVS-SDEVLASQEVHDISVAIGIDPDSD 475 VEGDSAGGSAKQ RDR +QAI+PLKGKILN + ++ + + EV + A+G + Sbjct: 426 VEGDSAGGSAKQGRDRRFQAILPLKGKILNVEKSRGIEKFITNDEVRALITAVGCGLGEE 485 Query: 476 DLS--QLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 + S +LRY KI I+ DAD DG HI TLL F +H L+ VY+A PPLY++ G+ Sbjct: 486 EFSEKKLRYHKIIIMTDADVDGAHIRTLLLTFFFRHMNPLIDGQFVYIAQPPLYKVSYGR 545 Query: 534 EVYYALTEEEKEGVLEQ 550 + Y L +E + + + Sbjct: 546 QERYLLNDEALQAYILE 562 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%) Query: 533 KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTID 592 E + E LE R+K ++QR+KGLGEMNP QL ETT+DP+ R L++++I Sbjct: 725 GEEIRFRSPRELLSFLESPVRQK--LSIQRYKGLGEMNPEQLWETTMDPSRRTLLKVSIP 782 Query: 593 DEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 D D + L+ ++ RR ++++ D+A +++ Sbjct: 783 --DYVEADRVFTTLMG-EQVAPRREFIEKHALDVANLDI 818 >UniRef50_B2URM5 DNA gyrase subunit B n=25 Tax=Bacteria RepID=B2URM5_AKKM8 Length = 852 Score = 641 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 230/611 (37%), Positives = 332/611 (54%), Gaps = 33/611 (5%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y A I+ L GLE VR+RPGMY +H EV+DNS+DE LAG+ ++D+++ Sbjct: 19 HEYGAAQIDKLEGLEAVRKRPGMYIGDPDERGLHHCVFEVLDNSIDEHLAGYCSKIDIVI 78 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S+ ++D+GRG+PVDIHP+ G+PAVEL+L LHAGGKF Y++SGGLHGVG V Sbjct: 79 HVDGSISIVDNGRGIPVDIHPKFGIPAVELVLTNLHAGGKFGQGAYKYSGGLHGVGAKCV 138 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPR 178 NALS + VRRDG+ Y I FE G+ V+ L+ VG+C TGT++ F+PD T F D+ Sbjct: 139 NALSDWFKAEVRRDGKRYQIKFERGKTVEPLRTVGSCACEVTGTTITFFPDATIFTDTTE 198 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNT--EQRWCYQDGLNDYLAEAVNGLPTLPEK 236 F RLT L+ A L PG+ I DE + + Y+DG+ +++ + + E Sbjct: 199 FKFDRLTTRLRELAFLNPGLVIELIDEREAPARRETFFYKDGIVEFVRQLGTNKEVINED 258 Query: 237 PFIGNFA------------GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLR 284 P + D VD + E + N I GGTH++G R Sbjct: 259 PISISGVRKVEVEYDGKKMEDDVLVDVVFQYN-NTYETNILCFANSIYNGDGGTHLSGFR 317 Query: 285 QGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCA 343 L + + + +L + LS ED+ + V+SVKM +P+F+ QTK++L + + Sbjct: 318 GALTRVINGYAKANGLLKEKDPSLSGEDVREGLVAVISVKMPNPRFSSQTKDKLVNTEIE 377 Query: 344 AFVSGVVKDAFILWLNQNVQAAELLAEMAI--SSAQRRMRAAKKVVRKKLTSGPALPGKL 401 V VV + + +N A+ + E +I + A+ R A++ VRK S LPGKL Sbjct: 378 GVVGNVVYEEIKTYFEENPAMAKKIIEKSITAARAREAARKARETVRKSALSIGGLPGKL 437 Query: 402 ADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV 461 ADC+ +D + ELF+VEGDSAGGSAK RDR QAI+PL+GK+LN + D+ L S+E+ Sbjct: 438 ADCSDRDPAKCELFIVEGDSAGGSAKMGRDRRTQAILPLRGKVLNVEKARLDKALGSKEI 497 Query: 462 HDISVAIGIDPDS------DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK 515 ++ AIG L ++RY KI I+ DAD DG HI TLL F +H LV+ Sbjct: 498 QNMITAIGAGIGEGDDEASFKLDRVRYHKIIIMTDADVDGAHIRTLLLTFFCRHMPQLVR 557 Query: 516 HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQL- 574 G++Y+A PLYRI K+ Y + L +L ++ G +P +L Sbjct: 558 AGYLYIAQAPLYRIIRRKKEEYVQDDVALNRKLIELA--VNDVTLRFADGSRSFSPEELS 615 Query: 575 --RETTLDPNT 583 ET ++ Sbjct: 616 AILETLVNLQR 626 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 8/118 (6%) Query: 518 HVYVALPPLYRIDLGK----EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573 + PL+ + G+ +V + + + + + + RFKGLGEM+ Sbjct: 738 MIVSMDTPLFELVEGEGDKEKVTPLFSVMDILESVISIGK--RGVEITRFKGLGEMDAKD 795 Query: 574 LRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 L +TT+DP R L+++ ++D++ R D M +L+ E R+N++ + ++ +++ Sbjct: 796 LFKTTMDPERRELLRVILNDDNAVRADEMFTILMG-DVVEPRKNYIVDHALNVRNLDI 852 >UniRef50_P66938 DNA topoisomerase 4 subunit B n=158 Tax=Bacteria RepID=PARE_STAAM Length = 663 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 234/640 (36%), Positives = 359/640 (56%), Gaps = 31/640 (4%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y+ D+I+VL GLE VR+RPGMY +T +HL E++DNSVDE L G+ +DV + Sbjct: 5 NNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEIVDNSVDEVLNGYGNEIDVTI 64 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + D S+ + D+GRGMP IH + G P VE+I LHAGGKF Y+ SGGLHGVG SVV Sbjct: 65 NKDGSISIEDNGRGMPTGIH-KSGKPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVV 123 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGE-KVQDLQVVGTCGKRNTGTSVHFWPDETFFD-SP 177 NALS+ +EV + RDG +Y+ +F+NG L G K T V F PD+T F S Sbjct: 124 NALSEWLEVEIHRDGSIYHQSFKNGGSPSSGLVKKGKTKKTGT--KVTFKPDDTIFKAST 181 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE--QRWCYQDGLNDYLAEAVNGLPTLPE 235 F+ L+ L+ A L ++IT D + E + + Y++G+ ++++ G L + Sbjct: 182 SFNFDVLSERLQESAFLLKNLKITLNDLRSGKERQEHYHYEEGIKEFVSYVNEGKEVLHD 241 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 + + VD A + + E S+VN + T GGTH G + + ++ Sbjct: 242 -VATFSGEANGIEVDVAFQYNDQYSES-ILSFVNNVRTKDGGTHEVGFKTAMTRVFNDYA 299 Query: 296 EYRNILP-RGVKLSAEDIWDRCAYVLSVKMQD--PQFAGQTKERLSSRQCAAFVSGVVKD 352 N L + L DI + V+SV++ + QF GQTK +L + + + V VV D Sbjct: 300 RRINELKTKDKNLDGNDIREGLTAVVSVRIPEELLQFEGQTKSKLGTSEARSAVDSVVAD 359 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAK-----KVVRKKLTSGPALPGKLADCTAQ 407 +L + Q ++ L + AI + Q R A K + +K L GKL ++ Sbjct: 360 KLPFYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKNKRKDTLLSGKLTPAQSK 419 Query: 408 DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVA 467 + + EL+LVEGDSAGGSAK RDR++QAI+PL+GK++NT + +++ ++E++ I Sbjct: 420 NTEKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHT 479 Query: 468 IGIDPDS-DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 IG + + Y ++ I+ DAD+DG HI LL F K+ + LV+ G V++ALPPL Sbjct: 480 IGAGVGTDFKIEDSNYNRVIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPL 539 Query: 527 YRIDLG----KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582 Y+++ G K V YA T+EE + ++L + +QR+KGLGEMNP QL ETT++P Sbjct: 540 YKLEKGKGKTKRVEYAWTDEELNKLQKELGK---GFTLQRYKGLGEMNPEQLWETTMNPE 596 Query: 583 TRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 TR L+++ + ED+ R+ + L+ + + RR W+++ Sbjct: 597 TRTLIRVQV--EDEVRSSKRVTTLMG-DKVQPRREWIEKH 633 >UniRef50_C4G1I8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1I8_ABIDE Length = 677 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 228/683 (33%), Positives = 350/683 (51%), Gaps = 59/683 (8%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDV 57 M++ Y+ I +L GLE VR+RPGMY +T +HL E++DN +DE LAG ++D+ Sbjct: 1 MSENYDGSQIVILEGLEAVRKRPGMYIGSTGTRGLHHLIWEILDNGIDEHLAGFCSQIDL 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 IL D + + D GRG+PVDIHP + +P ++ LHAGGKFS Y+ SGGLHGVG S Sbjct: 61 ILRNDGGITIRDYGRGVPVDIHPTKKIPTERVVYTVLHAGGKFSGGAYKVSGGLHGVGAS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGE------KVQDLQVVGTCGKRNTGTSVHFWPDE 171 VVNALS ++ V +RRDG VY +ENG +L V TC K + GTSV F+PD+ Sbjct: 121 VVNALSTKMIVEIRRDGNVYVDEYENGGHPVTALVKGELPAVKTCKKSDKGTSVTFYPDD 180 Query: 172 TFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLP 231 T F++ F + LK A L G+++ FKDEI E+ + +DG+ Y+ Sbjct: 181 TIFETIEFKADIIKKKLKETAFLNKGLKLNFKDEITGEEKTYEEKDGIKSYVKYINRETE 240 Query: 232 TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAM 291 + ++ V+ A + G +Y N I + GGT V G + L M Sbjct: 241 VIHDEVVYVEGESGDIEVEVAFQYT-NGFSEQINAYCNRINVVDGGTLVTGFKTALTRVM 299 Query: 292 REFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV 350 ++ L + +DI + ++S+K DPQF GQTK +L + V VV Sbjct: 300 NQYARELGYLKGKDDNFDGKDIRNGIVAIISIKHPDPQFEGQTKTKLGNTDAKTAVEEVV 359 Query: 351 KDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRK-KLTSGPALPGKLADCTAQDL 409 + + ++N++ + + ++A S R + K K + + KLA C++++ Sbjct: 360 SKEIVRYFDKNIEVLKSILDLAQKSYSARTASDKARNAVLKSLNDFDVKSKLASCSSKNA 419 Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 E++LVEGDSAGG+ K AR+R+ QA++PL+GKILN + + +++L + E+ + G Sbjct: 420 EECEIYLVEGDSAGGTVKTARNRKTQAVLPLRGKILNVEKAALEKILVNNEIKSMIATFG 479 Query: 470 IDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR 528 D+++LRY KI IL DAD DG HI+TLL F + L+K G +Y LPPLY+ Sbjct: 480 CGIGDEFDITKLRYDKIIILTDADVDGAHISTLLLTFFYRFMPDLIKEGKIYRGLPPLYK 539 Query: 529 I---DLGKEV--------------------------------------YYALTEEEKEGV 547 + + G +V Y + E E Sbjct: 540 VDYEESGAKVLEEKKLGEGQLDIFQLGVEDKPSEKQLKAKSGKKKKKSEYIFNDYELEKF 599 Query: 548 LEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLL 607 + + + +QR+KGLGEM+ QL ETTLDP TR L ++ I D D + +L+ Sbjct: 600 KK--NKNRKILEIQRYKGLGEMDASQLWETTLDPKTRSLARIDIS--DTVEADEVTSLLM 655 Query: 608 AKKRSEDRRNWLQEKGDMAEIEV 630 + RR ++ + A++++ Sbjct: 656 SS-VVPPRREFIMNEAKYAKVDI 677 >UniRef50_B2UCF3 DNA gyrase subunit B n=47 Tax=Proteobacteria RepID=B2UCF3_RALPJ Length = 842 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 224/584 (38%), Positives = 315/584 (53%), Gaps = 34/584 (5%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDV 57 +Y+A +I++L GLE VR+RPGMY T +HL EV+DNS+DEALAGH + V Sbjct: 14 ANSYDAASIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGHCTEIQV 73 Query: 58 ILHADQSLEVIDDGRGMPVDIH----PEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 +H D S+ VID+GRG+P I E A E+ + LHAGGKF+ +Y+ SGGLHG Sbjct: 74 TIHTDNSISVIDNGRGIPTGIKFDDKHEPKRSATEIAMTELHAGGKFNQNSYKVSGGLHG 133 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFENGEK-----------------VQDLQVVGTC 156 VG+S VN LSK ++V VR+ G+V+ I F G V L+V+GT Sbjct: 134 VGVSCVNGLSKWMKVTVRQGGKVHYIEFAQGVPQNRLIETVQGPDGQMVEVSPLRVLGTT 193 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 KR GT VHF DE F + + L+ ++ + L GV I D+ E+ + + Sbjct: 194 DKR--GTEVHFLADEEIFTNVEYHYEILSKRIRELSFLNNGVHIRLTDQRTGKEEDFAFS 251 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 G+ ++ L F D AV+ ++ W E + N IP G Sbjct: 252 GGVKGFVEYINKNKTVLHPTIFFAAGEKDGVAVEVSMQWNDAYNE-QVLCFTNNIPQRDG 310 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 GTH+ GLR + + ++ I + V S +D+ + VLSVK+ +P+F+ QTK+ Sbjct: 311 GTHLTGLRAAMTRVINKYIADNEIAKKAKVDTSGDDMREGLTCVLSVKVPEPKFSSQTKD 370 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAK---KVVRKKLT 392 +L S + V VV A +L + A+++ + +A+ R A K RK + Sbjct: 371 KLVSSEVRLPVEEVVAKALSDFLLETPVDAKIICGKIVEAARAREAARKAREMTRRKGVL 430 Query: 393 SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSS 452 G LPGKLADC +D +ELF+VEGDSAGGSAKQ RDR++QAI+PLKGKILN Sbjct: 431 DGMGLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARF 490 Query: 453 DEVLASQEVHDISVAIGIDPDSDD--LSQLRYGKICILADADSDGLHIATLLCALFVKHF 510 D++L+SQEV + A+G DD L +LRY +I I+ DAD DG HI TLL F + Sbjct: 491 DKMLSSQEVLTLITAMGTGIGKDDYNLDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQM 550 Query: 511 RALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRK 554 +++ GHVY+A PPLY+I GKE Y + E L + Sbjct: 551 PEIIERGHVYIAQPPLYKIKHGKEERYIKDDVEMAAYLVRQALD 594 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 528 RIDLG-KEVYYALTEEEKEGVLEQLKRK-KGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 ++ G + + + L + + + QR+KGLGEMNP QL ETT+D RR Sbjct: 740 KVRRGTGDKVREQNVADFHAAMTWLLSEAERGVSRQRYKGLGEMNPEQLWETTMDVTQRR 799 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 L+++ I ED D + L+ E RRN+++ +A I+V Sbjct: 800 LLRVQI--EDAIAADQIFTTLMGDD-VEPRRNFIESNALVARNIDV 842 >UniRef50_D0LFL2 DNA gyrase subunit B n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFL2_HALO1 Length = 821 Score = 631 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 224/564 (39%), Positives = 326/564 (57%), Gaps = 14/564 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDV 57 Y+AD+I VL GLE VR+RPGMY T +H+ EV+DN+VDEALAG+ RVD+ Sbjct: 12 ATEYDADSITVLKGLEAVRKRPGMYIGDTDDGSGLHHMVHEVVDNAVDEALAGYCDRVDI 71 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 +H+D S+ V D+GRG+PV +H +EG PA EL++ LHAGGKF+ +Y+ SGGLHGVG+S Sbjct: 72 TIHSDNSITVEDNGRGIPVAVHKDEGRPAAELVMTVLHAGGKFNQNSYKVSGGLHGVGVS 131 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS+ +++ +RR+G+VY + G V DL+ GT +R GT + F PD F Sbjct: 132 VVNALSRTLKLEIRREGKVYFQEYRQGIPVSDLRSTGTTDRR--GTKITFLPDPEVFKQT 189 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 FS L+ + + L G+ I DE + +Q +CY+ G+ ++A+ + E Sbjct: 190 EFSFGALSQRFRELSYLNSGLTIAITDERESQQQVFCYEGGMASFVADLNANKNPVTE-V 248 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 + VD A+ W E + N I GGTH+ G RQGL + + Sbjct: 249 VAFTDEREGVTVDIAMQWNDSYAE-QINCFTNTIKNKDGGTHLTGFRQGLTRTVNAYAAE 307 Query: 298 RNILP--RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 +L +G LS ED+ + V+SVK+ DP+F+ Q K++L S + A V+ VV D Sbjct: 308 NKLLKELKGNNLSGEDLREGLVAVISVKVADPKFSNQPKDKLVSSEVAGAVAAVVNDKLQ 367 Query: 356 LWLNQNVQAAELLAEM---AISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRT 412 + N + A + + A + +A + V RK +LPGKLADC +D ++ Sbjct: 368 SFFEHNPKDARSIIQKAVVAARARDAARKAREMVQRKGALEYTSLPGKLADCQERDPSKC 427 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 ELF+VEG+SAGGSAKQ RDRE+QAI+PLKGKILN D++L+SQE+ + A+G Sbjct: 428 ELFIVEGESAGGSAKQGRDREFQAILPLKGKILNVERARMDKMLSSQEIVTLITALGCGI 487 Query: 473 D-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 D+ +LRY +I I+ DAD DG HI TLL F + + ++++ H+Y+A PPL+++ Sbjct: 488 GPEKDMGRLRYHRIVIMTDADVDGSHIRTLLLTFFFRQYPEIIENNHLYIAQPPLFKVKR 547 Query: 532 GKEVYYALTEEEKEGVLEQLKRKK 555 GK Y E E + L K+ Sbjct: 548 GKSETYLKNEHSLEDYVLDLVSKE 571 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 58/107 (54%), Gaps = 6/107 (5%) Query: 525 PLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTR 584 P + G+++ T +E +E + RK ++QR+KGLGEMN QL +TT+ P+ R Sbjct: 720 PYVLVHKGEDIGTVTTLDELAEAVEAVGRKG--LSIQRYKGLGEMNSDQLWDTTMCPDQR 777 Query: 585 RLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 L+Q+ ID + + +L+ E RR++++ ++ +++ Sbjct: 778 TLLQVRID--AREEAADVFSVLMG-DLVEPRRHFIENNALNVRNLDI 821 >UniRef50_D1BTM8 DNA topoisomerase (ATP-hydrolyzing) n=8 Tax=Actinobacteria (class) RepID=D1BTM8_XYLCX Length = 715 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 249/705 (35%), Positives = 363/705 (51%), Gaps = 82/705 (11%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y A + VL GLE VR+RPGMY +T H E+IDNSVDEAL G A ++ V+L Sbjct: 14 KNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALGGFATKIAVVL 73 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 HAD S+ V DDGRG+PVD+ P+ G+ VE++ +LHAGGKF +Y SGGLHGVG SVV Sbjct: 74 HADSSVTVTDDGRGIPVDVEPKTGLSGVEVVFTKLHAGGKFGGGSYTASGGLHGVGASVV 133 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEK---------------------VQDLQVVGTCGK 158 NALS R++V V R G+ Y + F GE +L VVG + Sbjct: 134 NALSARLDVEVDRGGKTYRMTFHRGEPGTFADGPAGASPESAFSPFIERSELAVVGRAKR 193 Query: 159 RNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI---------NN 208 TGT V +W D F S FS L ++ L PG+EIT +DE Sbjct: 194 GVTGTRVRYWADRQIFPKSAVFSYDELVTRVRQTTFLVPGLEITVRDERGLPGTPGADGP 253 Query: 209 TEQRWCYQDGLNDYLAEAV-----------NGLPTLPEKPFIGNFAGD--------TEAV 249 E+ + + G D++ G T E + + G V Sbjct: 254 HEEMFVHHGGAVDFVDFLAPDAPVTATWTLRGSETFTETVPVLDERGHMSPREVQRDCEV 313 Query: 250 DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR------NILPR 303 D AL W G + ++VN+I T +GG+H+ G QGL+ +R+ E + Sbjct: 314 DIALRW-GTGYDTELRTFVNIIATPKGGSHLTGFEQGLVKVVRKQVEANARRLKISAKDG 372 Query: 304 GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQ 363 G +L +DI V++V++ +PQF GQTKE L + A V+ V+ L + Sbjct: 373 GERLEKDDITAGLTAVVTVRLAEPQFEGQTKEVLGTAPVRAIVARTVEKQLGAILTSTKR 432 Query: 364 AAEL----LAEMAISSAQRRMRAAKKV---VRKKLTSGPALPGKLADCTAQDLNRTELFL 416 + L + ++ + R+ A K+ RK +LP KLADC + D+ R+ELF+ Sbjct: 433 DDKAQASLLLDKVVAEMRARVSARKQKEISRRKNALETSSLPAKLADCRSDDVERSELFI 492 Query: 417 VEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SD 475 VEGDSA G+AK AR ++QA++P++GKILN + S ++L + E I +G S Sbjct: 493 VEGDSALGTAKLARSSDFQALLPIRGKILNVQKASISDMLRNAECAAIIQVLGAGSGRSF 552 Query: 476 DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID----- 530 DL RYGK+ ++ DAD DG HI TLL LF ++ R LV+ G V+ A+PPL+RI+ Sbjct: 553 DLDAARYGKVVLMTDADVDGAHIRTLLLTLFYRYMRPLVEAGRVFAAVPPLHRIEVYGAR 612 Query: 531 -LGKEVYYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPMQLRETTLDPNTRRLV 587 G E Y +E E + L++L R + +QR+KGLGEM+ QL ETT+DP R L Sbjct: 613 GKGNEYIYTYSEAELQATLKRLDRAGKRYKDDIQRYKGLGEMDADQLAETTMDPRHRTLR 672 Query: 588 QLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG---DMAEIE 629 ++T + + + ++L+ R++++ D + I+ Sbjct: 673 RVTAQH--AEAAERVFELLMGSD-VAPRKDFIISGAESLDRSRID 714 >UniRef50_P50028 DNA gyrase subunit B n=331 Tax=cellular organisms RepID=GYRB_MYCCT Length = 643 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 243/644 (37%), Positives = 371/644 (57%), Gaps = 26/644 (4%) Query: 1 MTQT--YNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRV 55 M + Y+ AI+VL GLE VR+RPGMY +T +HL E++DN++DEALAG+ ++ Sbjct: 1 MAENKKYDESAIQVLEGLEAVRKRPGMYIGSTDNKGLHHLVWEIVDNAIDEALAGYCTQI 60 Query: 56 DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115 DVIL D S+ VID+GRG+P +H + G P E+I LHAGGKF + Y+ SGGLHGVG Sbjct: 61 DVILEKDNSITVIDNGRGIPTGMH-KTGKPTPEVIFSVLHAGGKFDSTAYKSSGGLHGVG 119 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENG-EKVQDLQVVGTCGKRNTGTSVHFWPDETFF 174 SV NALSKR + + RD +++ I F+NG + + L + T K TGT+++F PD+T F Sbjct: 120 SSVTNALSKRFKAIIYRDKKIHEIEFKNGGKLEKPLTFINTTYK--TGTTINFLPDDTIF 177 Query: 175 DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLP 234 + +F+ S ++ LK A+L G++IT D I+N + +QDGL +++ E V+ + Sbjct: 178 SNAKFNFSLISERLKESALLNSGLKITLSDLISNRYVEYQFQDGLVEFVKELVDDKTPVT 237 Query: 235 EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 + I N + V+ AL + + E + + N + T+ GGTH+ G + GL+ A+ ++ Sbjct: 238 DIITINNESK-NIIVEIALQYTEDDNE-IILGFANNVKTIDGGTHLVGFKSGLIRAINDY 295 Query: 295 CEYRNILPRGVKLSAEDIWDRCAYVLSVKMQD--PQFAGQTKERLSSRQCAAFVSGVVKD 352 + + IL KL + D+ + +++VK+ + ++ GQTK +L + V +V + Sbjct: 296 AKDQKILKDKTKLDSNDLREGLVAIVTVKIPENLIEYEGQTKSKLGTSDAKTVVEQIVYE 355 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAK-----KVVRKKLTSGPALPGKLADCTAQ 407 WL +N A + E A+++ + R+ A + K V+ K + GKL + Sbjct: 356 FMSYWLIENKVLANKVIENALNAQKARIAAKQARQAIKSVKGKKNVNKLMLGKLTPAQGK 415 Query: 408 DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVA 467 EL+LVEGDSAGGSAK RDR +QAI+PL+GK++N+ + ++L ++E+ I A Sbjct: 416 KRELNELYLVEGDSAGGSAKSGRDRNFQAILPLRGKVINSEKAKLVDLLKNEEIQSIINA 475 Query: 468 IGIDPDS-DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 IG D+S + YGKI I+ DAD+DG HI TLL F +H + L+ H VY+ALPPL Sbjct: 476 IGAGVGKDFDISDINYGKIIIMTDADTDGAHIQTLLLTFFYRHMKDLIIHKKVYIALPPL 535 Query: 527 YRIDLGKEV-YYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 Y+I + Y EEE K K +QR+KGLGEMN QL +TT+DP R+ Sbjct: 536 YKITFNDKSFIYLWDEEELNKF---NKTNTKKYEIQRYKGLGEMNADQLWQTTMDPKNRK 592 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++Q+TI D + M L+ E R+ W+QE + Sbjct: 593 IIQVTIS--DGLLAERMFKTLMGDD-VEKRKLWIQENVKFTLED 633 >UniRef50_B5YGU1 DNA gyrase subunit B n=9 Tax=Bacteria RepID=B5YGU1_THEYD Length = 759 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 226/559 (40%), Positives = 319/559 (57%), Gaps = 14/559 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 ++Y A+ I++L GLE VR RP MY +T +HL EV+DNSVDEALAG +++V L Sbjct: 18 ESYKAEHIKILKGLEGVRTRPAMYIGSTGVEGLHHLVYEVVDNSVDEALAGFCNKIEVRL 77 Query: 60 HADQSLEVIDDGRGMPVDIHPE--EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 H D S VID+GRG+P +IHP+ E A+E++L LHAGGKF +K Y+ SGGLHGVG+S Sbjct: 78 HTDGSCSVIDNGRGIPTEIHPDDPEKRTALEIVLTELHAGGKFESKAYKVSGGLHGVGLS 137 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS+ +EV V+RDG+V + G V ++V+G K TGT + F D F+ Sbjct: 138 VVNALSEWLEVEVQRDGKVVRQKYCRGIPVTGVEVIGQTEK--TGTKIKFKADPEIFEVT 195 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 FS L H K + L G++I DE + + + + G+ ++ + G L KP Sbjct: 196 EFSREILAHRFKELSYLNRGLKIILIDERDGYVEEFIKEGGIVSFVEDLNKGKKPLHPKP 255 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 D V+ A+ + EG ++VN I T +GGTH+ G + L + + Sbjct: 256 IYITGQKDRVIVEIAIQYN-EGYSEEILTFVNNINTKEGGTHLVGFKSALTRTINSYAML 314 Query: 298 RNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 +L LS ED+ + V+SVK+ +PQF GQTK +L + + V ++ + Sbjct: 315 NGLLKEGKESLSGEDVREGIVGVISVKIPEPQFEGQTKMKLGNSEVKGIVETILNEKLSR 374 Query: 357 WLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTE 413 WL +N A+ + E A +A+ R A K RK + LPGKLADCT +D + E Sbjct: 375 WLEENPNYAKRIIEKAKDAARAREAAKKAKELTRRKGILEDTTLPGKLADCTEKDPSHAE 434 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD 473 LF+VEGDSAGGSAKQARDR QA++PL+GKILN + D++L S+E+ + AIG Sbjct: 435 LFIVEGDSAGGSAKQARDRRSQAVLPLRGKILNVEKARIDKMLTSEEIKTLITAIGGGIG 494 Query: 474 S--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 + +RY KI ++ DAD DG HI TLL F + L++ G++Y+A PPLYRI Sbjct: 495 KEHFEPENVRYHKIILMTDADVDGAHIRTLLLTFFYRQMLPLIEKGYLYIAQPPLYRIKR 554 Query: 532 GKEVYYALTEEEKEGVLEQ 550 GK Y TE+E L Sbjct: 555 GKWERYIQTEDEFHEFLMD 573 Score = 98.6 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 6/105 (5%) Query: 527 YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 Y I + E + E + +K +QR+KGLGEMNP QL ETT+DP R L Sbjct: 660 YIIRIKTEAVKTKSLWELYNKVMDAVKKG--LTIQRYKGLGEMNPEQLWETTMDPEKRTL 717 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 +Q+T+ ED QR + + +L+ E R+ ++ ++ +++ Sbjct: 718 LQVTV--EDAQRANEIFTILMG-DEVEPRKEFIVRHALEVRNLDI 759 >UniRef50_Q1MQ88 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q1MQ88_LAWIP Length = 799 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 219/616 (35%), Positives = 341/616 (55%), Gaps = 23/616 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y AD+I +L GL+ VR RP MY +T +HL EVIDNS+DEA+AG R+DV+L Sbjct: 10 KDYTADSITILEGLQAVRMRPAMYIGSTDTRGLHHLVYEVIDNSIDEAMAGFCTRIDVVL 69 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S+ V D+GRG+PVDIHP+EGVPAV++++ +LHAGGKF N Y+ SGGLHGVG+S V Sbjct: 70 HLDNSITVRDNGRGIPVDIHPKEGVPAVQVVMTKLHAGGKFDNDTYKVSGGLHGVGLSCV 129 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS+++EV + R G + + G +++LQ +G GT++ F DE F++ + Sbjct: 130 NALSEQLEVTILRGGYRWKQKYSRGVPLENLQRIGESDN--HGTTIRFKADEEIFETTEY 187 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 S L + A L G+EI DE + + + G++ ++ + G L Sbjct: 188 SYETLKRRFEELAYLNKGLEIHCTDERTSETHLFKAEGGIHQFVKDINTGESILHS-IIS 246 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 + +D+AL + E ++ N I T +GGTH+ G + L A+ + + + Sbjct: 247 RESIVEGVMIDFALQYNAGYKENT-LTFANNIRTKEGGTHLAGFKTALTRAINGYIKGQP 305 Query: 300 ILPRGVK---LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356 L + +K LS +D+ + VLSVK+ +PQF GQTK +L + + A V G V + Sbjct: 306 DLSKKLKGQTLSGDDVREGLTAVLSVKLPNPQFEGQTKTKLGNSEIAGIVGGAVYTSLDT 365 Query: 357 WLNQNVQAAELLAEMAIS---SAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTE 413 + +N + + + AI + + RA + V RK ALPGKLADC +++ +E Sbjct: 366 YFQENPKDIRCIIDKAIDAARAREAARRAKELVRRKGALFDNALPGKLADCQSKNPAESE 425 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD 473 LF+VEGDSAGGSAKQ R+ QAI+PL+GKILN D++LA++E+ + A+G Sbjct: 426 LFIVEGDSAGGSAKQGRNPNIQAILPLRGKILNIERTRFDKMLANKEIKALITAMGAGIG 485 Query: 474 SDDLS--QLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 +D +LRY KI I+ DAD DG HI TLL F +++ L++ GH+Y+A PPLYR+ Sbjct: 486 EEDTDYQKLRYYKIVIMTDADVDGAHIRTLLLTFFFRNYVGLIERGHLYIAQPPLYRVHN 545 Query: 532 GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 K + + L R + +Q + L+ + + +++ ++ Sbjct: 546 SKSEKFIKDDPSLNDFLL--HRVSSELEIQ------TESGKLLKGSDIITTMKQIESISQ 597 Query: 592 DDEDDQRTDAMMDMLL 607 +D + ++ + Sbjct: 598 RTKDAELAGISENLFM 613 Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 4/77 (5%) Query: 555 KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSED 614 + N+QR+KGLGEMNP QL TT+DP R L+Q+TI+ D + + + L+ +R E Sbjct: 726 RKGINIQRYKGLGEMNPEQLWVTTMDPQNRTLLQVTIN--DAEEANETFEQLMG-ERVEP 782 Query: 615 RRNWLQEKG-DMAEIEV 630 RR +++ ++ ++++ Sbjct: 783 RREFIERNALNVRDLDI 799 >UniRef50_Q1RHT8 DNA gyrase subunit B n=702 Tax=Proteobacteria RepID=GYRB_RICBR Length = 808 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 222/649 (34%), Positives = 331/649 (51%), Gaps = 35/649 (5%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR----PNHLGQEVIDNSVDEALAGHAKRVDVI 58 +Y AD+I+VL GLE VR+RPGMY +H+ EV+DN++DEALAG+ V V+ Sbjct: 11 SSYGADSIKVLKGLEAVRKRPGMYIGDVGDGSGLHHMIYEVVDNAIDEALAGYCDLVRVV 70 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+ + S+ V D+GRG+PV+IH EEG+ A E+I+ +LHAGGKF +Y+ SGGLHGVG+SV Sbjct: 71 LNKNGSVTVSDNGRGIPVEIHEEEGISAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSV 130 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS +E+ + R+ + I F NG L VV + GT V F+P F + Sbjct: 131 VNALSDWLELRIWRNNTEHLIRFNNGITEAPLAVVKENVDKK-GTEVTFFPSVETFTNIE 189 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 F S + H L+ A L GV+I D E + Y G+ Y+ + Sbjct: 190 FDFSIIEHRLRELAFLNSGVKILLTDNRFEEVKEVEFYYTGGIEAYVKYLDRAKHAVHSC 249 Query: 237 PFI-GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 + + +++ A+ W E + N I GGTH++ + GL + + Sbjct: 250 IVVNADNTESGISLELAMHWNDSYHE-NILCFTNNIRQRDGGTHLSAFKSGLTRVITAYL 308 Query: 296 EYRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 E + + S ED + VLSVK+ DP+F+ QTK++L S + V V Sbjct: 309 ENTGLNKKAKNAFSGEDTREGICCVLSVKVPDPKFSSQTKDKLVSSEVRPIVENAVYTKV 368 Query: 355 ILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNR 411 + W ++ A+L+ + +A R A K RK + LPGKLADC A+D Sbjct: 369 LEWFEEHPADAKLIINKIMEAANAREAARKARELTRRKSVLEVSNLPGKLADCHAKDPAV 428 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 +ELF+VEGDSAGG+AKQ RD + QAI+PL+GKILN D++L S ++ + A+G Sbjct: 429 SELFIVEGDSAGGTAKQGRDSKIQAILPLRGKILNVERARFDKMLGSDQIGTLITALGTG 488 Query: 472 PD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 D L +LRY K+ I+ DAD DG HI TLL F +H L+ G++Y+A PPLY++ Sbjct: 489 VDNREFSLEKLRYHKVIIMTDADVDGSHIRTLLLTFFYRHMPELINKGYLYIAQPPLYKV 548 Query: 530 DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN------- 582 G Y E+ + L + + + L N +L + N Sbjct: 549 KKGASELYLKNEQALQDYLVKSAISDATLTLDNKEQLTNENLEELMSKVIKFNSLLDHAS 608 Query: 583 ---TRRLVQL----------TIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 R + ++ D+E D R ++ L + ++S D+ +W Sbjct: 609 KKFNRSITEILAINDLLNNKIFDNESDSRLKKALNALNSLEQSPDKTDW 657 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 20/134 (14%) Query: 498 IATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGK 557 I+ L +F + L ++ + + + LT + + +K Sbjct: 694 ISKLALTIFDVFNKQL--------------KLVVKNQEFDILTPSILLNTIIECGKKG-- 737 Query: 558 PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRN 617 +VQRFKGLGEMN QL +TTLDP R L+Q+ + + D + + L+ E RR Sbjct: 738 ISVQRFKGLGEMNSDQLWDTTLDPKKRTLMQVRVAEVD--EAEGIFSTLMG-DVVEPRRQ 794 Query: 618 WLQEKG-DMAEIEV 630 ++Q ++ ++V Sbjct: 795 FIQSNALNVVNLDV 808 >UniRef50_C3XDF7 DNA gyrase subunit B n=5 Tax=Campylobacterales RepID=C3XDF7_9HELI Length = 775 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 223/643 (34%), Positives = 340/643 (52%), Gaps = 31/643 (4%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 T+ Y AD I+VL GLE VR+RPGMY T +H+ EV+DNS+DEA+AG K + + Sbjct: 5 TKEYLADNIKVLKGLEAVRKRPGMYIGDTNTNGLHHMIYEVVDNSIDEAMAGFCKNIKIT 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L S + DDGRG+PVD+HP E +PA ++L LHAGGKF Y+ SGGLHGVG+SV Sbjct: 65 LTDKGSAIIEDDGRGIPVDMHPTENMPAATVVLTVLHAGGKFDKDTYKVSGGLHGVGVSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178 VNALS ++ + + ++ ++Y FE G +L+++G + GT++ F+PD + Sbjct: 125 VNALSCKLIMTIYKNNKIYKQEFEKGIPTTELEIIGET--KKHGTTIEFFPDPEIMEITE 182 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 F + LT K A L G++I FKDE + ++ + ++ GL+ ++ + F Sbjct: 183 FDSNILTRRFKEMAYLTHGIKIRFKDERDGSDTTFHFEGGLSQFIEDINKKTLITQILSF 242 Query: 239 IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 ++ AL + EG + S+VN I T GGTH G R GL A+ + E Sbjct: 243 EATENEYDSEIEIALAYN-EGYDEKVLSFVNNIRTPDGGTHEAGFRAGLSRAILNYIEAN 301 Query: 299 -NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 N + VK+ +D+ + +++ K+ DPQF GQTK +L S V + + + Sbjct: 302 ANTREKDVKVLGDDVREGLVAIVATKIMDPQFEGQTKGKLGSSFVKGIVQKLTYEKISKF 361 Query: 358 LNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTEL 414 +N A+L+ + + +A+ RA + S LPGK ADC ++D + E+ Sbjct: 362 FEENPTQAKLIMQKVLIAARGREAAKRARDLTRKDNKVSVSTLPGKFADCQSKDPSECEI 421 Query: 415 FLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD- 473 +LVEGDSAGGSAKQ RDR +QAI+PL+GKILN + D +L S+E+ ++ A G Sbjct: 422 YLVEGDSAGGSAKQGRDRRFQAILPLRGKILNVEKSRLDTILKSEEIKNMITAFGCGIGD 481 Query: 474 SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 + +LRY KI I+ DAD DG HI TLL F ++F+ LV+ G++Y+A PPLY+ K Sbjct: 482 EFNEEKLRYHKIIIMTDADVDGSHIQTLLMTFFYRYFKPLVQGGYIYIAQPPLYKYKRNK 541 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQL-------RETTLDPNT--- 583 + Y ++ L + FKG+G +Q+ R+ D Sbjct: 542 KEVYLKDDKALSDFLIE-----NGIEHFNFKGIGHNELLQILKIIAHYRQLVNDLERRYS 596 Query: 584 -----RRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 R LV+ +D D + ++ L K+ + + E Sbjct: 597 VQYVLRYLVENELDTHDLESLSKNIESYLLSKQYNVLKKHIDE 639 Score = 85.8 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 6/86 (6%) Query: 546 GVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDM 605 +E+ RKKG + R+KGLGEMN +L ETT+ P R LVQ+ I EDD+ D M ++ Sbjct: 695 EEIEEATRKKGD--ISRYKGLGEMNKEELWETTMSPQNRTLVQVKI--EDDEMADEMFNI 750 Query: 606 LLAKKRSEDRRNWLQEKG-DMAEIEV 630 + E RR ++Q+ D+ ++V Sbjct: 751 FMG-DEVEPRRQYIQKHARDVKNLDV 775 >UniRef50_UPI0001C311B1 DNA gyrase, B subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311B1 Length = 808 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 221/567 (38%), Positives = 313/567 (55%), Gaps = 13/567 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 + +Y+A I VL GLE VR+RPGMY +T +HL EV+DNSVDEALAGHA VDV Sbjct: 14 SPSYDAQDITVLEGLEAVRKRPGMYIGSTGIRGLHHLVYEVVDNSVDEALAGHASAVDVT 73 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN-YQFSGGLHGVGIS 117 +H D S+ V+D+GRG+PV + +EG PAVE++L LHAGGKF + Y+ SGGLHGVG+S Sbjct: 74 IHPDNSITVVDNGRGIPVAMMEKEGKPAVEVVLTVLHAGGKFGDGGGYKVSGGLHGVGVS 133 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS+++ V + RDG ++ + G L+ + TGT++ F PD+ +S Sbjct: 134 VVNALSEQLRVEIFRDGFAWSQDYVRGAPQGQLERGEATSE--TGTTITFLPDDEIMESL 191 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ-RWCYQDGLNDYLAEAVNGLPTLPEK 236 F + L L+ A L G+ I+ DE + Y G+ D++A + K Sbjct: 192 DFDFTTLEERLRETAFLTRGLRISLTDERGERRHVEFQYDGGIQDFVAYLNENKDPVQRK 251 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 + D AV+ A+ W + S+ N I T +GG+H++G R L + ++ Sbjct: 252 IVYFSSESDEGAVEVAMQWNSS-YQESVFSFANNINTHEGGSHLSGFRSALTRTINKYAR 310 Query: 297 YRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 + L L+ ED+ + V+S K+ +PQF GQTK +L + F +V Sbjct: 311 EKGFLKERDANLAGEDVREGLTAVISAKLAEPQFEGQTKTKLGNPGMQGFTESIVNKGLD 370 Query: 356 LWLNQNVQAAELLAEMAISSAQRRMRAA---KKVVRKKLTSGPALPGKLADCTAQDLNRT 412 +L +N Q A + A+ +AQ R A RK LPGKLADC+ +D + Sbjct: 371 EFLEENPQDARSVILKAVQAAQARSAARKARDLTRRKSALENSRLPGKLADCSVKDPALS 430 Query: 413 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP 472 E+F+VEGDSAGGSAKQ RDR QAI+PL+GKILN D+VL + EV + AIG Sbjct: 431 EIFIVEGDSAGGSAKQGRDRSTQAILPLRGKILNVERARIDKVLGNNEVQALITAIGTGV 490 Query: 473 -DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531 D DL + RY KI ++ DAD DG HI TL+ L + L+ G +Y+A PPLY++ Sbjct: 491 RDDFDLEKARYHKIILMTDADVDGAHIRTLVLTLLFREMMPLIDAGFIYIAKPPLYKLKQ 550 Query: 532 GKEVYYALTEEEKEGVLEQLKRKKGKP 558 GK Y + E E +L K ++ Sbjct: 551 GKNERYIEKDSELEEMLLSDKLERFSI 577 Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 6/113 (5%) Query: 519 VYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETT 578 V P + I LG A++ +E + + + RFKGLGEMN QLRETT Sbjct: 701 VQAVGTPPFDIRLGDHRETAVSFDELRSRVMDMA--GRGVEINRFKGLGEMNAEQLRETT 758 Query: 579 LDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD-MAEIEV 630 +DP TR L ++T+ ED + + ML+ + E RRN+++E + ++V Sbjct: 759 MDPATRTLARVTM--EDAAAAERVFSMLMG-DQVEPRRNFIEENASLVTNLDV 808 >UniRef50_D2NTW6 Type IIA topoisomerase, B subunit n=10 Tax=Actinomycetales RepID=D2NTW6_9MICC Length = 724 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 246/698 (35%), Positives = 353/698 (50%), Gaps = 76/698 (10%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y A + VL GLE VR+RPGMY +T H E+IDNSVDEALAG + + VI Sbjct: 27 SSNYTARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGFGQSIQVI 86 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+ D S+EV DDGRG+P DI P G+ VE++ +LHAGGKF +Y SGGLHGVG SV Sbjct: 87 LYRDGSVEVRDDGRGIPTDIEPRTGLSGVEVVFTKLHAGGKFGGGSYNASGGLHGVGASV 146 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK---------------------VQDLQVVGTCG 157 VNALS R++V V R + Y ++F +G LQ+VG Sbjct: 147 VNALSSRLDVQVDRGSKTYQMSFRHGIPGFFESGRTPKPEDPFTPATEGTDALQIVGRAK 206 Query: 158 KRNTGTSVHFWPDETFFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEI---------N 207 + TGT V +W D F +FS L ++ A L PG+ I +DE Sbjct: 207 RGVTGTRVRYWADPQIFTPDAKFSYEDLAARVRQTAFLIPGLRICIRDERRLPGTPGELE 266 Query: 208 NTEQRWCYQDGLNDYLAEAVNG-----------LPTLPEKPFI--------GNFAGDTEA 248 E+ + Y G+++++ + + E + Sbjct: 267 PHEEVFQYDGGISEFVEFLAHDERITDTWRFSGSGSFTETVPVLGEDGRSQLTDVERDCE 326 Query: 249 VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC--EYRNILPRGVK 306 VD AL W G E S+VN+I T +GGTH G QGLL MR+ R K Sbjct: 327 VDVALRWGI-GYETTVRSFVNIIATPKGGTHTTGFEQGLLRVMRKHLADNARKYKVGNDK 385 Query: 307 LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN----V 362 + +D+ VL+V++ +PQF GQTKE L + VS VV DA L Sbjct: 386 IEKDDVLAGLTAVLTVRLAEPQFEGQTKEILGTPAVRQIVSKVVGDALKARLESTARAEK 445 Query: 363 QAAELLAEMAISSAQRRMR---AAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEG 419 A L E +S + R+ + RK ++P KL DC + ++ +ELF+VEG Sbjct: 446 AQAAALCEKVVSEMKTRVSARIHKETQRRKTALESSSMPTKLVDCRSTNVEHSELFIVEG 505 Query: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDLS 478 DSA G+A+ AR YQA++P++GKILNT S +VLA+ E + IG + DL Sbjct: 506 DSALGTARLARSSSYQALLPIRGKILNTQRASVTDVLANAECAALIQVIGAGSGRTFDLD 565 Query: 479 QLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR---IDLGK-- 533 RYGK+ ++ DAD DG HI TLL LF ++ R L++ G VY A+PPL+R + GK Sbjct: 566 SARYGKVIMMTDADVDGAHIRTLLLTLFYRYMRPLIEAGRVYAAVPPLHRVEVVRRGKPN 625 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 E+ Y +E++ +L+ L+ + +QR+KGLGEM+ QL ETT+DP R L ++ I Sbjct: 626 EMVYTYSEKQLHELLDSLQEQGVSYKEPIQRYKGLGEMDADQLAETTMDPRHRMLRRIRI 685 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ED + + +L+ + R+ ++ +++ Sbjct: 686 --EDAEAAERAFSLLMGSE-VAPRKEFIIAGAH--QLD 718 >UniRef50_Q83G36 DNA gyrase subunit B-like protein n=2 Tax=Tropheryma whipplei RepID=Q83G36_TROWT Length = 662 Score = 622 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 231/658 (35%), Positives = 337/658 (51%), Gaps = 41/658 (6%) Query: 1 MTQT--YNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRV 55 M+ YNAD I +L GL VR+RPGMY +T H E+IDNSVDE LAG V Sbjct: 1 MSSNTDYNADDIALLEGLAAVRKRPGMYIGSTDNHGLAHCLWEIIDNSVDEVLAGFGNVV 60 Query: 56 DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115 ++ LH D S V D GRG+PVDI + G+ VEL+ +LHAGGKF Y SGGLHGVG Sbjct: 61 NITLHGDNSFSVQDFGRGIPVDIESKTGLTGVELVFTKLHAGGKFGTGAYFTSGGLHGVG 120 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 SVVNALS+++ V V RDG + + F + L+ TGT V FWPD F Sbjct: 121 ASVVNALSEKLSVEVDRDGMTWVMEF-RNQVTSGLRSKCKIASNVTGTRVRFWPDPLIFG 179 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEA--------- 226 S + L A L PG+ + +D + + ++ G ++ Sbjct: 180 SAEICIESLHQRAMQTAFLVPGLRVNIEDRVLGKSSSYLFEGGCKQFVEHLSAGELITDV 239 Query: 227 --VNGLPTLPEKPFIGNFAGDTE--------AVDWALLWLPEGGELLTESYVNLIPTMQG 276 + G + E + G+ VD AL W + E S+VN+I T +G Sbjct: 240 LCIRGKGSFSEAVPVLKETGNLVISSVERVCDVDIALAWRND-FETHINSFVNVIETPKG 298 Query: 277 GTHVNGLRQGLLDAMREFC--EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK 334 GTH +G Q LL +R + R + + ED++ V+SVK+ +PQF GQTK Sbjct: 299 GTHYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPEPQFEGQTK 358 Query: 335 ERLSSRQCAAFVSGVVKDAFILWLN--QNVQAAELLAEMAISSAQ---RRMRAAKKVVRK 389 E L + V+ +V D + + E ++ + + RK Sbjct: 359 EVLGTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVAQMHFRLAARASRETQRRK 418 Query: 390 KLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWE 449 +LP KL DC + D+N +ELF+VEGDSA G+A++AR+ EYQA++P++GKILN + Sbjct: 419 NALETSSLPAKLVDCRSNDVNESELFIVEGDSALGTARRARNSEYQALLPIRGKILNVQK 478 Query: 450 VSSDEVLASQEVHDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVK 508 S + LA+ E I IG + D++Q RYGK+ I++DAD DG HI LL LF + Sbjct: 479 ASVADALANAECASIIQVIGAGSGSNFDIAQARYGKVIIMSDADVDGAHIRILLLTLFFR 538 Query: 509 HFRALVKHGHVYVALPPL--YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPN--VQRFK 564 + + ++ G V+ ALPPL + E Y ++ E E VL +LK++ + +QR+K Sbjct: 539 YMQPMISSGRVFSALPPLHQVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHREPIQRYK 598 Query: 565 GLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 GLGEM+ QL ETT+D + R L+++ + D Q+ + +L+ RR ++ Sbjct: 599 GLGEMDADQLAETTMDRSKRTLLRIRMS--DAQQASDIFALLMGND-VAPRREFIANS 653 >UniRef50_Q2GD49 DNA gyrase subunit B n=9 Tax=cellular organisms RepID=Q2GD49_NEOSM Length = 783 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 220/574 (38%), Positives = 322/574 (56%), Gaps = 18/574 (3%) Query: 1 MTQT-YNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRV 55 M+ T Y AD+I+VL GLE VR+RPGMY T + + EV+DNSVDE+LAG+ + Sbjct: 1 MSNTDYTADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHQMVYEVVDNSVDESLAGYCTAI 60 Query: 56 DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115 +V++ D S+ V D+GRGMP D+H EGV A E+I+ +LHAGGKF +Y+ SGGLHGVG Sbjct: 61 EVVIDVDGSISVEDNGRGMPTDMH-GEGVSAAEVIMTQLHAGGKFDQSSYKVSGGLHGVG 119 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 +SVVNALS +++ + RDG+V+ FENGE V+ L V G CG + TGT VHF P + F Sbjct: 120 VSVVNALSDWLKLTIYRDGKVHFAEFENGETVRSLSVTGECGDK-TGTLVHFLPSRSTFK 178 Query: 176 -SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT---EQRWCYQDGLNDYLAEAVNGLP 231 + S S L + + + L PG+ I+ D + + + G +++A Sbjct: 179 NTTEVSFSTLENRFRELSFLNPGLRISLLDMRKGSSTGKVVFFSSGGTEEFVAYLDRSKQ 238 Query: 232 TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAM 291 + P D+ A+D ++ W E + N I GGTH+ LR + M Sbjct: 239 PIHSTPIRVVGGVDSIAIDVSMQWNDSYYE-NVLCFTNNIKQKDGGTHLAALRSAMTRVM 297 Query: 292 REFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV 350 + N++ + V +S ED+ + + +LSVK+ DP+F+ QTKE+L S + + +V Sbjct: 298 HNYIVKENLIKKDKVVVSGEDVREGLSAILSVKLPDPKFSSQTKEKLISSEVKPVIEKIV 357 Query: 351 KDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQ 407 DA WL +N +A ++A + SA R A K RK LPGKLADC + Sbjct: 358 SDALASWLEENPSSARVIARKVVESALAREAAKKARDLTRRKGGLEITTLPGKLADCQEK 417 Query: 408 DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVA 467 +EL +VEGDSAGGSAKQ RDR+ QA++PL+GKILN + +V+ S E+ ++ A Sbjct: 418 SPELSELLIVEGDSAGGSAKQGRDRKTQAVLPLRGKILNVEKTRFHKVIGSAEIGNLIAA 477 Query: 468 IGIDPD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 +G ++ ++RY KI I+ DAD DGLHI TLL F ++ R +V+ G++Y+A P Sbjct: 478 LGTSIGEEEFNIDKIRYHKIIIMTDADVDGLHIRTLLLTFFFRYARPIVERGYLYIAQTP 537 Query: 526 LYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPN 559 LY++ Y + E L K + Sbjct: 538 LYKVMRKGADVYLRDDAALEEYLLDRIVKGKELE 571 Score = 83.1 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%) Query: 539 LTEEEKEGVL----EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDE 594 E +L + + +QRFKGLGEMNP QL TTLDP+ R + ++TI++ Sbjct: 690 FNNGEYHSILAFIRDADSVARAGMVLQRFKGLGEMNPEQLWSTTLDPSNRTIFKVTIEE- 748 Query: 595 DDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 D M ML+ RR+++ + + I+V Sbjct: 749 -AAVADQMCSMLMG-DAVGPRRDFIVNNALNASNIDV 783 >UniRef50_P94281 DNA gyrase subunit B n=211 Tax=cellular organisms RepID=GYRB_BARBK Length = 692 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 254/647 (39%), Positives = 373/647 (57%), Gaps = 24/647 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 TYNA +I +L GLEPVR RPGMY T +HL E+IDN++DEA+AG+A +D+ L Sbjct: 51 STYNASSIRILEGLEPVRLRPGMYIGGTDSKALHHLFSEIIDNAMDEAVAGYADLIDITL 110 Query: 60 HADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 ++ L V D+GRG+P++ HP+ +E+I+ LH+GGKF K YQ SGGLHGVGISV Sbjct: 111 DSNNYLTVTDNGRGIPIENHPQIPDKSTLEVIMTHLHSGGKFDGKAYQTSGGLHGVGISV 170 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSP 177 VNALS +EV V R+ ++Y F G L+ +G R GT V F PD F ++ Sbjct: 171 VNALSDDMEVEVARERKLYRQRFSRGIPQSGLEELGDVYNRR-GTRVCFHPDSQIFGENT 229 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDE--------INNTEQRWCYQDGLNDYLAEAVNG 229 F ++ + ++KA L GV+I + + + + + DGL DYL+ ++ Sbjct: 230 AFDPEKIYKIARSKAYLFNGVKIRWNCDPAALKDAKNIPEKDVFYFPDGLKDYLSLSLKN 289 Query: 230 LPTLPEKPFIGNFAG--DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 + + F G +V+WA+ W G+ +SY N IPT +GGTH GLRQ L Sbjct: 290 KHLVTAEIFSGKTQQLSGHGSVEWAIAW--HNGDAYIQSYCNTIPTEEGGTHETGLRQTL 347 Query: 288 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 L ++ + E R ++++D+ +LSV ++DPQF GQTK+RL++ + V Sbjct: 348 LRGLKAYAELIG-NKRASIITSDDVMASTVVMLSVFIKDPQFVGQTKDRLATTEAQRIVE 406 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV--RKKLTSGPALPGKLADCT 405 ++D F WL + A L I A+ R++ + RK LPGKLADC+ Sbjct: 407 NAIRDPFDHWLANSPHEATKLLNWVIERAEERLKRRQDREINRKTAVRKLRLPGKLADCS 466 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 ELF+VEGDSAGGSAKQAR+R QAI+PL+GKILN + +++ +SQ + D+ Sbjct: 467 QNSAAGAELFIVEGDSAGGSAKQARNRTNQAILPLRGKILNVASAAREKMSSSQTIADLI 526 Query: 466 VAIGIDPDSDDLSQ-LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALP 524 +A+G S + LRY +I I+ DAD DG HIA+LL F + L++ GH+Y+A+P Sbjct: 527 LALGCGTRSKYREEDLRYERIIIMTDADVDGAHIASLLITFFFQEIPDLIRAGHLYLAVP 586 Query: 525 PLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTR 584 PLYRI G +V YA + K+ +L+ KGK + RFKGLGEM QL+ETT++P R Sbjct: 587 PLYRISQGGKVAYARDDSHKDELLKTEFTGKGKIEIGRFKGLGEMRAEQLKETTMNPKKR 646 Query: 585 RLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 L++++ID + Q T + L+ K E+R ++QE A +++ Sbjct: 647 TLLRVSIDTFEMQETKETVQNLMGTKP-EERFRFIQESSTFANNLDI 692 >UniRef50_A6DH73 DNA gyrase subunit B n=7 Tax=cellular organisms RepID=A6DH73_9BACT Length = 838 Score = 617 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 211/571 (36%), Positives = 322/571 (56%), Gaps = 15/571 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Y AD+I V+ GLE VR+RP MY T +HL EV+DNS+DEALAGH + V Sbjct: 9 AGEYGADSISVMKGLEAVRKRPSMYIGDTNERGLHHLVYEVVDNSIDEALAGHCNNITVK 68 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 LH D S+ V+DDGRG+PV+IH EEG+PAVEL+L +LHAGGKF +Y+ SGGLHGVG+S Sbjct: 69 LHIDNSVTVVDDGRGIPVNIHEEEGIPAVELVLTKLHAGGKFDKDSYKVSGGLHGVGVSC 128 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSP 177 VNALS+ +EV V RD ++ I FE G L+ +G TGT V F PD F ++ Sbjct: 129 VNALSEWMEVKVHRDETLHFIRFERGLTETSLKTIGHTN--ITGTEVIFKPDFEIFTETL 186 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEIN---NTEQRWCYQDGLNDYLAEAVNGLPTLP 234 + L L+ A L PG+ I F DE + + + G+ +++ +G + Sbjct: 187 IYKWDILAKRLRELAFLNPGITINFIDERAEDGERRETFYFPGGIGEFVKHLNDGKTVVT 246 Query: 235 EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 + + D D + + +G + SY N I T++GGTH+ G + L ++ + Sbjct: 247 DTV-TFSTEKDGVTADVSFQY-HDGFQENIYSYCNNIHTIEGGTHLAGFQTALTASINSY 304 Query: 295 CEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 + + +S D+ + ++SVK+ +PQF GQTK +L + + + V +V +F Sbjct: 305 MKNDSKFKNEKNVSGTDVREGLTAIISVKVPEPQFEGQTKTKLGNNEVRSIVRAIVSTSF 364 Query: 355 ILWLNQNVQAAELLAEM---AISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411 +L +N +AA+++ E A ++ +RA + + + + G A GKL+ C++++ + Sbjct: 365 NEFLEENPKAAKVVVEKALLANRASAAALRARQLIRKDNVLEGFADAGKLSGCSSKNPDE 424 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 E+F+VEGDSAGGSAKQ R+ E QAI+PL+GK++N + D+V A+ E+ + AIG Sbjct: 425 CEIFIVEGDSAGGSAKQGRNSEVQAILPLRGKLINVEKARIDKVFANTEIGSLISAIGCG 484 Query: 472 PD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID 530 D+ ++RY KI I+ DAD DG HI TLL F + + L++ G++YVA PPLY++ Sbjct: 485 VGNEFDVEKIRYKKIVIMTDADVDGSHIMTLLLTFFFRQMKPLIEAGYIYVAQPPLYKVV 544 Query: 531 LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQ 561 K Y + L +L + Sbjct: 545 RRKREEYIKNDAMLNNFLLELGVDGITLENK 575 Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 6/107 (5%) Query: 525 PLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTR 584 P++ + G T + ++ + +QR+KGLGEMN QL ETT+DP R Sbjct: 737 PIFNLTDGNNDTPIFTLIQLFEAIKDEGSQG--LKLQRYKGLGEMNADQLWETTMDPTRR 794 Query: 585 RLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 L+Q+T+ ED + M +L+ E RR+++++ + E++V Sbjct: 795 DLLQVTM--EDAVEAERMFSLLMG-DVVEPRRHFIEKYSTTLKELDV 838 >UniRef50_A1TI33 DNA gyrase subunit B n=16 Tax=Burkholderiales RepID=A1TI33_ACIAC Length = 877 Score = 616 bits (1588), Expect = e-175, Method: Composition-based stats. Identities = 225/678 (33%), Positives = 332/678 (48%), Gaps = 73/678 (10%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDV 57 + Y AI++L GLE VR+RPGMY T +HL EV+DNS+DEALAGH + V Sbjct: 36 SDGYGEGAIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 95 Query: 58 ILHADQSLEVIDDGRGMPVDIH----PEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 +H+D S+ V+D+GRG+P + E A E+ L LHAGGKF+ +Y+ SGGLHG Sbjct: 96 TIHSDNSISVVDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHG 155 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFE------------NGEKVQDLQVVGTCGKRNT 161 VG+S VNALSK + + VRRDG+V+ + F NG +V ++V G KR Sbjct: 156 VGVSCVNALSKMLRLTVRRDGKVHLLEFSQGFVQNRILETVNGVEVSPMRVTGETDKR-- 213 Query: 162 GTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLN 220 GT VHF PD F ++ F L L+ + L GV I KDE E + G+ Sbjct: 214 GTEVHFLPDTEIFKENNDFHYEILAKRLRELSFLNNGVRIRLKDERTGKEDDFSGAGGVM 273 Query: 221 DYLAEAVNGLPTLPEKPFIGNFA----------GDTEAVDWALLWLPEGGELLTESYVNL 270 ++ L F + G V+ A+ W E + N Sbjct: 274 GFVQFINASKKVLHPNAFHATGSRPAETYGGIPGTEIGVEVAMQWNDGFNES-VLCFTNN 332 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQF 329 IP GGTH+ GLR + + ++ E + + V++S +D+ + VLSVK+ +P+F Sbjct: 333 IPQRDGGTHLTGLRAAMTRVIGKYIEQNELAKKAKVEVSGDDMREGLCCVLSVKVPEPKF 392 Query: 330 AGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAK---KV 386 + QTK++L S + A V +V A +L + A++L + +A+ R A K Sbjct: 393 SSQTKDKLVSSEVRAPVEDIVAKALTDYLEERPNDAKILCGKIVEAARAREAARKAREMT 452 Query: 387 VRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN 446 RK + G LPGKLADC +D +E+++VEGDSAGGSAKQ RDR++QAI+PL+GKILN Sbjct: 453 RRKGVLDGMGLPGKLADCQEKDPALSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILN 512 Query: 447 TWEVSSDEVLASQEVHDISVAIGIDPDS-------------DDLSQLRYGKICILADADS 493 + +++L S E+ + A+G ++ +LRY +I I+ DAD Sbjct: 513 VEKARYEKLLTSNEILTLITALGTGIGKASADGTGKGGADDFNVDKLRYHRIIIMTDADV 572 Query: 494 DGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKR 553 DG HI TLL F + LV+ GH+Y+A PPLY++ GKE Y + L ++ Sbjct: 573 DGAHIRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKNGKEELYLKDGPALDTFLLRVAL 632 Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 + Q R + L L + + + + Sbjct: 633 RDASVTTGG---------EQART----LDGETLSTLAQKHQVAEAVIERLSAFMD----- 674 Query: 614 DRRNWLQEKGDMA--EIE 629 R L+ D ++ Sbjct: 675 --REALRAIADGVALNLD 690 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 4/100 (4%) Query: 532 GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 G+ + ++ + +K + + QR+KGLGEMNP QL ETT+DP RRL+++ I Sbjct: 781 GERQREEKVSDFRQAMAWLIKEAERTTSRQRYKGLGEMNPEQLWETTMDPEVRRLLRVQI 840 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 ED D + ML+ E RR++++ A I+V Sbjct: 841 --EDAIEADRVFTMLMG-DEVEPRRDFIETNALRAGNIDV 877 >UniRef50_B3TAI0 Putative DNA gyrase B n=1 Tax=uncultured marine microorganism HF4000_APKG8D23 RepID=B3TAI0_9ZZZZ Length = 646 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 214/650 (32%), Positives = 347/650 (53%), Gaps = 48/650 (7%) Query: 25 MYTDT----TRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHP 80 M+ + +H EV+DN+VDE LAG+ V+V L + S+ VID GRG+PV P Sbjct: 1 MFLGDPHDGSALHHCIWEVVDNAVDEHLAGYNSTVEVNLEKNGSVTVIDHGRGIPVGKIP 60 Query: 81 EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIA 140 EEGV A E+I+ +LHAGGKF NK Y+ +GGLHGVG+S VNA+S+++ + + RDG+V+ Sbjct: 61 EEGVSAAEVIMTKLHAGGKFDNKAYKVAGGLHGVGVSAVNAVSEKLSMTIHRDGKVWTQN 120 Query: 141 FENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVE 199 F G++ L+ G T +++F PD F F ++ L+ A L G++ Sbjct: 121 FVRGKRKAVLKATGKTTSTGT--TINFKPDMKIFSDVTDFDFEQINTRLRRTAFLNAGLQ 178 Query: 200 ITFKDEI--NNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEA----VDWAL 253 I +D + E Y GL Y+ + ++ + D + V+ AL Sbjct: 179 IWLRDFRGQDTVEIEHKYDGGLRQYVESMNEKKKAIHDEVIHILGSKDGDKGEVLVEVAL 238 Query: 254 LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIW 313 W E + N+I GG H++GL+ L + + + R +L LS +D+ Sbjct: 239 QWTDAYSES-IHCFTNIIHNTDGGAHLSGLKSSLTRTVNSYAQSRKLLKNVSSLSGDDVR 297 Query: 314 DRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI 373 + + V+S+K DP F QTK +L + + A V +V D + +N A + E + Sbjct: 298 EGLSAVISIKHPDPSFNAQTKAKLVTSEVAGIVEQIVNDKLGDYFEENPAVARSIVEKVV 357 Query: 374 SSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR 430 +++ R A K RK + G LPG+LADC ++D EL++VEG+SAGGSAK AR Sbjct: 358 LASKAREAARKARDLTRRKGVLEGGGLPGQLADCQSRDPAECELYIVEGESAGGSAKTAR 417 Query: 431 DREYQAIMPLKGKILNTWEV--SSDEVLASQEVHDISVAIGIDPDS-------DDLSQLR 481 DR QA++PL+GKILN + +V +++++ + A+G + D +LR Sbjct: 418 DRRTQAVLPLRGKILNVERQQRNLTKVFSNEQIQRMIRALGAGVGNEEEDEGAFDPEKLR 477 Query: 482 YGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTE 541 YGKI I+ DAD DG HI TL+ + R + +G+VY+A PPL+ + GK + TE Sbjct: 478 YGKIIIMTDADIDGAHIRTLILTFMWRFMRRAIANGNVYIAAPPLFSVSRGKHTEWVHTE 537 Query: 542 EEKEGVLEQLKRKK--GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI-------- 591 ++++ V+++L+++ K NVQR+KGLGEMNP QL +TT+DP +R + Q+ + Sbjct: 538 KDRDAVVKRLQKEAPTAKINVQRYKGLGEMNPEQLWQTTMDPESRTMFQVKMPEKPSEVR 597 Query: 592 ----------DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 ++ + + + +L+ + DRR ++++ + ++V Sbjct: 598 FTDVGEQMSDEEAVEGEVNELFSILMGED-VPDRRAFIEKNASKVTALDV 646 >UniRef50_A1SCM1 DNA gyrase subunit B n=28 Tax=Actinomycetales RepID=A1SCM1_NOCSJ Length = 711 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 240/685 (35%), Positives = 362/685 (52%), Gaps = 62/685 (9%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+A AI+VL GLE VR+RPGMY +T +HL E++DN+VDEALAG+ R+ + L Sbjct: 31 DYDASAIQVLEGLEAVRKRPGMYIGSTGERGLHHLIWEIVDNAVDEALAGYCDRIVLTLL 90 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 AD + V D+GRG+P P + +PA+ L L LHAGGKF Y+ SGGLHGVG+SVVN Sbjct: 91 ADGGIRVEDNGRGIPTGTAPGQELPALTLALTVLHAGGKFGGGGYKVSGGLHGVGVSVVN 150 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN-TGTSVHFWPDETFFDSPRF 179 ALS R+ V+ G ++ +F G +L+ V TGT++ +W F++ Sbjct: 151 ALSTRLVAEVKNRGHLWRQSFSAGVPDGELEQVRPVEPDEGTGTTITYWASPDIFETTTH 210 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNT------------------------------ 209 S+ +T ++ A L G+EI +DE Sbjct: 211 SLETITSRIREYAFLNKGLEIVVRDERPAAAEIVDAVEDDTVDPDHRGGIDDAGHDAIKR 270 Query: 210 ------EQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFA-----GDTEAVDWALLWLPE 258 EQ + Y GL DY+ + +++ A+ W Sbjct: 271 GEGGALEQIFKYDRGLIDYVEHLNRRKTAANPTVIAFEAETPESVENHMSLEVAMQWNTS 330 Query: 259 GGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCA 317 E + ++ N I T +GGTH G R L + + ++ + ++S +DI + Sbjct: 331 FSESVH-TFANTINTHEGGTHEEGFRAALTSLVNNWGFEWGLMKKPEDRVSGDDIREGLT 389 Query: 318 YVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQ 377 ++S+K+ +PQF GQTK +L + + FV +V D WL QN + A ++A Sbjct: 390 AIISIKLGEPQFEGQTKTKLGNTEAKGFVQRLVNDQLGAWLEQNPAEGRDIVRKAQAAAS 449 Query: 378 RRMRAAK----KVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDRE 433 R+ A K RK L G LPGKL+DC + + E+F+VEGDSAGGSA+Q RD Sbjct: 450 ARIAARKARDLARSRKGLLGGGGLPGKLSDCQSTNPAECEVFIVEGDSAGGSARQGRDPR 509 Query: 434 YQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP-DSDDLSQLRYGKICILADAD 492 QAI+P++GKILN + D+VL++QEV I A+G D D+ +LRY K+ ++ADAD Sbjct: 510 IQAILPIRGKILNVEKARIDKVLSNQEVQSIISALGTGIQDEFDIEKLRYHKVVLMADAD 569 Query: 493 SDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK--EVYYALTEEEKEGVL-- 548 DG HI TLL L + + L++ G+VY+A PPLYR+ K E + ++ E++ +L Sbjct: 570 VDGHHINTLLLTLLFRFMKPLIEGGYVYMAQPPLYRLRWNKPHEHEFVYSDAERDALLRA 629 Query: 549 --EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDML 606 E K+ + VQR+KGLGEMN +L ETT+DP R ++Q+T+D D D + +L Sbjct: 630 GQEAGKKLPKENPVQRYKGLGEMNAKELWETTMDPEQRLMLQVTLD--DAAHADEIFSIL 687 Query: 607 LAKKRSEDRRNWLQEKG-DMAEIEV 630 + + E RR+++Q D+ +++ Sbjct: 688 MGED-VEQRRSFIQRNAKDVRFLDI 711 >UniRef50_O33367 DNA gyrase subunit B n=6 Tax=Bacteria RepID=GYRB_MYXXA Length = 815 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 205/601 (34%), Positives = 307/601 (51%), Gaps = 15/601 (2%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y D+I L G E VR+RPGMY T + L EV+DN+VDE+LAGH ++V++H Sbjct: 17 EYGTDSITKLEGREAVRKRPGMYIGDTMAYGLHKLVYEVVDNAVDESLAGHCTDIEVVIH 76 Query: 61 ADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D SL V D+GRG+PV HP+ G +E++L LHAG KF N Y+ SGGLHGVG++ V Sbjct: 77 VDGSLSVQDNGRGIPVGPHPKFPGKDTLEVVLTELHAGSKFGNGAYKVSGGLHGVGVTCV 136 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 N LS+ +V V R+G VY A+ G + VGT KR GT + F PD T + F Sbjct: 137 NFLSEWFKVRVHRNGIVYEQAYAQGVPDTPPREVGTTDKR--GTHIAFKPDATVMELVEF 194 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFI 239 + L+ L+ A L G+ I +DE N E + + G++ ++ TL +KP Sbjct: 195 NFETLSQRLRELAFLNAGLHIVVRDERTNKEHDFKFDGGISSFVEYLNKSKQTLHDKPIS 254 Query: 240 GNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 + + +D A+ W +G + ++ N I T +GG+H++G + L + + E + Sbjct: 255 FSTEREGVMLDIAMQWN-DGYDERIYTFANNINTHEGGSHLSGFKAALTRTLNSYAEKGS 313 Query: 300 ILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWL 358 + + ED + + V+SVK+ +PQF GQTK +L + + V +V D +L Sbjct: 314 LWKDLKETPTGEDAREGLSAVISVKLTNPQFEGQTKTKLGNSEVKGLVEQMVNDQLGSFL 373 Query: 359 NQNVQAAELLAEMA---ISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELF 415 + A+ + + +A + V RK + G LPGKLADC +D N +EL+ Sbjct: 374 EETPMVAKKVVAKIGDACRARLAARKARETVRRKGVLDGGGLPGKLADCQIRDPNESELY 433 Query: 416 LVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD 475 +VEGDSAGGSAKQ RDR QAI+PL+GKILN ++ E+L S E+ + A+G ++ Sbjct: 434 IVEGDSAGGSAKQGRDRRNQAILPLRGKILNVEKL-LREMLTSAEIVTLITALGNGIGAE 492 Query: 476 --DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGK 533 D + RY +I ++ DAD DG HI TLL R+ + Y++ K Sbjct: 493 DYDPEKARYHRIFLMTDADVDGSHIRTLLLTSSSGRCRSSCRRAISTSRSRRSYKVTRNK 552 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 + Y E L ++ + + + LG L E + R Q D Sbjct: 553 KDQYVKDEHALNEYLLKIASEHARVLTPGGE-LGGAELKALLEKVITYEERLEKQAKRRD 611 Query: 594 E 594 Sbjct: 612 A 612 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 6/101 (5%) Query: 531 LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLT 590 G+ + +E + + + +QR+KGLGEMNP QL +TT++P TR L+Q+ Sbjct: 720 RGRGEITVFSVQEVLAAVRK--DAQRGLGLQRYKGLGEMNPEQLWDTTMNPATRTLLQVR 777 Query: 591 IDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 + ED +D + +L+ + E RR +++ D+ +++ Sbjct: 778 V--EDAVESDEIFSLLMG-EAVEPRREFIERNALDVQNLDI 815 >UniRef50_Q89B37 DNA gyrase subunit B n=30 Tax=Proteobacteria RepID=GYRB_BUCBP Length = 804 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 207/623 (33%), Positives = 334/623 (53%), Gaps = 28/623 (4%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTD----TTRPNHLGQEVIDNSVDEALAGHAKRVD 56 M TY + I++L GL+ V++RPGMY T +H+ EV+DNS+DEALAG K + Sbjct: 1 MKNTYTSSNIKILKGLDAVKKRPGMYIGNTDDGTGLHHMVFEVVDNSIDEALAGFCKNII 60 Query: 57 VILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 V +H D S+ + DDGRG+P DIH EEG+ A E+I+ LHAGGKF N +Y+ SGGLHGVG+ Sbjct: 61 VTIHDDNSISIQDDGRGIPTDIHDEEGISAAEVIMTVLHAGGKFDNTSYKVSGGLHGVGV 120 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 SVVNALSK++E+ + RD ++Y ++NG L ++G + TGT + FWP+ F + Sbjct: 121 SVVNALSKKLELFIYRDKKIYYQIYKNGYPKNTLSIIGYT--KITGTKIRFWPNLEIFTN 178 Query: 177 -PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 +F+ L+ L+ + L V I D + + + Q GL +++ + Sbjct: 179 VTQFNWEILSKRLRELSFLNSNVSIYLDDAKKHINENFYQQGGLKEFIIYLNKNKKPIHS 238 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 K F + + V+ A+ W +G + Y N IP GGTH++G R L M + Sbjct: 239 KIFYFSSKKNNVEVEIAMQWN-KGFQENIYCYTNNIPQQDGGTHLSGFRSALTRTMNNYL 297 Query: 296 EYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 + + + + + +D + ++S+K+ DP+F+ QTK +L S + + + +V + Sbjct: 298 DKEGYIKKNKINIIGDDTREGLTAIISIKINDPKFSSQTKNKLVSSEVKSALESLVNEFL 357 Query: 355 ILWLNQNVQAAELLAEMAISSA---QRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNR 411 + +L +N Q ++ + I S+ RA + +K LPGKL+DC +D Sbjct: 358 MEFLLENPQESKNIVTKIIESSRVRNAARRAREMTRKKGTLDLIGLPGKLSDCQERDPAL 417 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 +E++LVEGDSAGGSAKQAR+R+ QAI+PLKGKILN + +++L+SQEV + A+G Sbjct: 418 SEIYLVEGDSAGGSAKQARNRKNQAILPLKGKILNVEKARYEKMLSSQEVTTLITALGCG 477 Query: 472 PD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 + +LRY +I I+ DAD DG HI TLL F ++ +++ G++Y+A PPLY++ Sbjct: 478 IGKNEYNPEKLRYHRIIIMTDADVDGSHIRTLLLTFFYRYMPEIIQRGYLYIAQPPLYKV 537 Query: 530 DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLR---ETTLDP---NT 583 + Y + E + +++ TL Sbjct: 538 TKNNKTRYIKDKNTMENYKLSTALENTILE--------SNTDKEIKIKCNYTLKKIISEY 589 Query: 584 RRLVQLTIDDEDDQRTDAMMDML 606 + + + +D+ + + +ML Sbjct: 590 KIIQTIFFKIKDNFPLNILNEML 612 Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 6/103 (5%) Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 I + Y ++ +L Q +QR+KGLGEMNP QL +TT++P TRR+++ Sbjct: 707 IKKNNKTYSIKNFQKNFELLIQ--NSFKNVLIQRYKGLGEMNPEQLWKTTMNPETRRMLK 764 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 +T+ + D T+ + + L+ E R+ +++ + I++ Sbjct: 765 ITLHNID--TTNKLFNTLMG-DSVEPRKLFIELYALKASNIDI 804 >UniRef50_B3R5I8 DNA topoisomerase IV, subunit B n=15 Tax=Proteobacteria RepID=B3R5I8_CUPTR Length = 663 Score = 611 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 320/660 (48%), Positives = 411/660 (62%), Gaps = 32/660 (4%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 T Y+ +I VL GLEPV++RPGMYT T P H+ QEVIDN+ DEAL GH + V LH Sbjct: 5 TSQYSESSIRVLKGLEPVKQRPGMYTRTDNPLHIVQEVIDNASDEALGGHGSEILVTLHR 64 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK---NYQFSGGLHGVGISV 118 D SL V DDGRG+PV IHPEEGVP VE++ RLHAGGKF Y FSGGLHGVG+SV Sbjct: 65 DGSLSVEDDGRGIPVGIHPEEGVPVVEIVFTRLHAGGKFDKGKGGAYAFSGGLHGVGVSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG-TCGKRNTGTSVHFWPDETFFDSP 177 NALS +++V V RDG + F G+ L G++ GT V WPD +FDS Sbjct: 125 TNALSTQLDVTVWRDGMCSTLTFSGGDVTVPLASRKLERGEKKNGTRVQVWPDARYFDSA 184 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 ++ L +L++KAVL PGV++T E Q W Y GL YL EA+ Sbjct: 185 AIPLAELQRLLRSKAVLLPGVKVTLVTEKTGERQTWQYDQGLKGYLVEALAQGSGAELVI 244 Query: 238 FIGNFAG--------------DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGL 283 + D E W + W E G + ESYVNLIPT GGTH +GL Sbjct: 245 PMFEGEHFADPDANPGEEGFADGEGASWVVAWT-EDGAPVRESYVNLIPTPAGGTHESGL 303 Query: 284 RQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCA 343 R+GL A++ F E + P+GVKL +ED++ R ++VLS K+ DPQF GQ KERL+SR Sbjct: 304 REGLFQAVKSFIEMHALQPKGVKLMSEDVFARASFVLSAKVLDPQFQGQIKERLNSRDAV 363 Query: 344 AFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLAD 403 VS + A LWLN +V+ + LAE+ I AQ R RAA+KV +KK + LPGKL D Sbjct: 364 RLVSTFSRPALELWLNHHVEYGKKLAELVIRQAQARTRAAQKVEKKKGSGVAVLPGKLTD 423 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C + D+ R ELFLVEGDSAGGSAK RD+E+QAI+PL+GK+LNTWE D + A+ EVHD Sbjct: 424 CESTDVTRNELFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNTWETERDRLFANNEVHD 483 Query: 464 ISVAIGIDP----DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHV 519 I+VAIG+DP D DLS LRYGKICIL+DAD DG HI LL LF +HF L++ G+V Sbjct: 484 IAVAIGVDPHGANDEPDLSNLRYGKICILSDADVDGAHIQVLLLTLFFRHFPKLIETGNV 543 Query: 520 YVALPPLYRI------DLGKEVYYALTEEEKEGV---LEQLKRKKGKPNVQRFKGLGEMN 570 YVA PPL+R+ + YAL E E E + L + K+ + RFKGLGEM+ Sbjct: 544 YVARPPLFRVDAPARGKKPAQKLYALDEGELEAIQDKLLKDGVKENSWQISRFKGLGEMS 603 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 QL ETT++P+TRRL+ +T+ + D +T MM+ML+ K + RR+WL+EKG+ E ++ Sbjct: 604 AEQLWETTMNPDTRRLLPVTLGEYDLPQTVEMMNMLMGKGEAAQRRSWLEEKGNEVEADI 663 >UniRef50_A0Q197 DNA topoisomerase IV subunit B n=34 Tax=Clostridium RepID=A0Q197_CLONN Length = 652 Score = 610 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 227/653 (34%), Positives = 355/653 (54%), Gaps = 38/653 (5%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 +Y+ + L LEPVR RPGMY +T +H E++DNS+DE G+ +V +I Sbjct: 9 KNSYDVTDLTSLEKLEPVRVRPGMYIGSTGTKGLHHCIWEILDNSIDEIANGYGNKVVLI 68 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+ D+S+ ++D+GRG+P IHP + VE++ LH GGKF+NKNY+ SGGLHGVG +V Sbjct: 69 LNKDKSVTIMDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNKNYKTSGGLHGVGAAV 128 Query: 119 VNALSKRVEVNVRRDGQVYNIAFEN-----------GEKVQDLQVVGTCGKRNTGTSVHF 167 VNALS+ +EV V + G ++ FE G + L++VG TGT + F Sbjct: 129 VNALSEWLEVEVYQKGHIHKQRFEYAEDKSLNKKMPGTPIFPLKIVG--DTERTGTKITF 186 Query: 168 WPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT--EQRWCYQDGLNDYLAE 225 PD+ F + F + L+ A G+ + KDE E+ + + GL D++ Sbjct: 187 KPDKEVFSTTEFKFEVIDERLQELAFQNKGITLVIKDERKEEVIEKEYHSERGLLDFIDY 246 Query: 226 AVNGLPTLPEKPFIGNFAGD----TEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVN 281 + + P + + + + + E SYVN IPT + GTH Sbjct: 247 LNESKIPIHKDPLLYEGEKEVNSIKVYCEVCMQFTDSSTE-NIASYVNNIPTTESGTHET 305 Query: 282 GLRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR 340 G + G+ A +E+ + NI+ + +D+ + +L VK+ +P F GQTK +L + Sbjct: 306 GFKTGMTRAFKEWAKKLNIVKEKDKGFEGDDLREGMTAILRVKISNPIFEGQTKTKLGNN 365 Query: 341 QCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA--QRRMRAAKKVVRKKLTSG-PAL 397 + ++ + W+ N + A + A+S+A + +++ +KK+ G L Sbjct: 366 EAYTVMNELAYIKIGEWIEDNKEIATQIINNAVSAAARREKIKKINDAEKKKVGKGTAPL 425 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLA 457 GK++ CT + E +VEGDSAGGSAKQARDR +Q IMP KGKI+NT + + VLA Sbjct: 426 AGKVSICTLKRPEFCEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQRLENVLA 485 Query: 458 SQEVHDISVAIGIDP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516 S+E+ + AIG ++ + L+Y KI IL+DAD DG HI TL ++ R+L+ + Sbjct: 486 SEELKLFNAAIGTGVLENYNEDDLKYDKIIILSDADVDGYHIRTLWITYIYRYMRSLITN 545 Query: 517 GHVYVALPPLYRI----DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPM 572 GH+Y+ALPPLY++ G+ YA ++EE +++ + +QR+KGLGEMNP Sbjct: 546 GHLYIALPPLYKVYKNSKKGEISRYAYSDEELASAKKEIGK---GALIQRYKGLGEMNPD 602 Query: 573 QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 QL +TTL+P TR L Q+TI ED + + M+ +L+ E RRN++ + + Sbjct: 603 QLWDTTLNPETRTLQQITI--EDAAKAEKMISLLMG-DVVEPRRNYMYKYAEF 652 >UniRef50_A8LVU4 DNA gyrase subunit B domain protein n=37 Tax=Actinomycetales RepID=A8LVU4_SALAI Length = 730 Score = 609 bits (1571), Expect = e-173, Method: Composition-based stats. Identities = 234/675 (34%), Positives = 357/675 (52%), Gaps = 56/675 (8%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y AD + L GL+ VR+RPGMY +T HL E++DNS DE +AGHA ++V LHA Sbjct: 54 YEADDLTHLEGLDAVRKRPGMYIGSTDSRGVGHLVNEILDNSTDEGVAGHATSIEVTLHA 113 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 D S++V DDGRG+P D+H + G+ VEL+L RLHAGGKF Y+ SGGLHGVG S VNA Sbjct: 114 DGSVQVDDDGRGIPTDVHAKSGISGVELVLTRLHAGGKFGGSGYKTSGGLHGVGASAVNA 173 Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQ--------------DLQVVGTCGKR-NTGTSVH 166 LS+R +V VRR G+++ ++F +G LQV+G +R TGTS+ Sbjct: 174 LSRRFDVTVRRGGKIHTMSFRHGVPGTFDGDGPEAPFRAGPGLQVIGAVKRRQRTGTSIR 233 Query: 167 FWPDETFFDS-PRFSVSRLTHVLKAKAVLCPGVEITFKDEI--NNTEQRWCYQDGLNDYL 223 +W D +F+ + L+ A L PGV +D E+R+ Y +GL D + Sbjct: 234 YWYDPRYFEVGATLDAEAVRMKLRNTAFLVPGVSYLLRDHTGAEPVEERFHYPNGLTDMV 293 Query: 224 AEAVNGLPTLPEKPFIGNFAGD------------------TEAVDWALLWLPEGGELLTE 265 + + G V+ A W G E E Sbjct: 294 DFLAPAGDRPVSGILVVSGEGTYRENAADANGVMQANVPRRAEVELAFRW-GTGYERTVE 352 Query: 266 SYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY-RNILP-RGVKLSAEDIWDRCAYVLSVK 323 + N I GGTH G + L + + R +L + + +DI + V+ V+ Sbjct: 353 CFTNTIRNAHGGTHRKGFERALTRTLADAVRNARGLLKAKEDPPTLDDILEGMTAVVHVR 412 Query: 324 MQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN--VQAAELLAEMAISSAQRRM- 380 + +PQF QTK+ LS+ + +V+ +WL + A + + +A+ R+ Sbjct: 413 IPEPQFTSQTKDELSTAGITKVLQRLVEQHLKVWLEERRTKAEARTVLQKIADAARVRLT 472 Query: 381 --RAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIM 438 + RK G ++P KL DC + + R+E+F+VEGDSA G+A+ AR EYQA++ Sbjct: 473 QKQQKDAARRKTALEGASMPAKLVDCRSTGVARSEMFIVEGDSALGTARLARSSEYQALL 532 Query: 439 PLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLH 497 P++GKILN + + +VL + E I +G + DLS +RYG++ I+ADAD DG H Sbjct: 533 PIRGKILNVQKANLQQVLDNAECAAIVQVLGAGSGRTFDLSAVRYGRVLIMADADVDGAH 592 Query: 498 IATLLCALFVKHFRALVKHGHVYVALPPLYRID---LGKEVYYALTEEEKEGVLEQLKRK 554 I TLL LF ++ R L++ G +Y A+PPL++I + Y T+EE E + +L++ Sbjct: 593 IRTLLITLFARYMRPLIEAGRLYAAMPPLHKITTRGRNPQTVYTYTQEEMEATVRRLEKA 652 Query: 555 KGKPN--VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRS 612 + + RFKGLGEMN +L ETT++P R + ++T+ ED + + ++++L+ ++ Sbjct: 653 GKQIVTPIPRFKGLGEMNADELWETTMNPAGRAVRRITL--EDAEAAEQVLELLMG-EKV 709 Query: 613 EDRRNWLQEKGDMAE 627 E RRNWL D + Sbjct: 710 EPRRNWLIASADRVD 724 >UniRef50_A0LUT9 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Actinobacteria (class) RepID=A0LUT9_ACIC1 Length = 703 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 232/684 (33%), Positives = 347/684 (50%), Gaps = 60/684 (8%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 T Y A + VL GLE VR+RPGMY +T H E++DN+VDEALAG+ +DVI Sbjct: 25 TDAYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCVWELLDNAVDEALAGYGDAIDVI 84 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 ++AD S+EV D GRG+PVD+ P+ G+ VE++ +LHAGGKF Y SGGLHGVG SV Sbjct: 85 VYADGSVEVRDTGRGIPVDVEPKTGLTGVEVVFTKLHAGGKFGGGAYGTSGGLHGVGASV 144 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENG--------------EKVQDLQVVGTCGKRNTGTS 164 VNAL+ R++V V RDG + ++F G L ++ TGT Sbjct: 145 VNALAARLDVEVDRDGATWTMSFRRGRRGIFDGPGPKAPFRPGGGLAKARRLPRKVTGTR 204 Query: 165 VHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL 223 V FWPD F R + L + A L PG+ IT +DE + + + G D+ Sbjct: 205 VRFWPDPQIFLRDARIDLDALIARARQTAFLVPGLAITIRDETTAYAETFRFSGGTKDFA 264 Query: 224 AEAV---------------NGLPTLPEKPFIGNFAGDTEA--------VDWALLWLPEGG 260 G E + + G + VD AL W G Sbjct: 265 DYLAAEAGAQTSVSGTLQLRGTGQFTETVPVLDDRGHSVPQDVIREMVVDVALRW-DSGY 323 Query: 261 ELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVL 320 + + S+VN++ T +GG+HV G + ++ + + ++ + +D+ + V+ Sbjct: 324 DTVIRSFVNVVATPKGGSHVTGFERAVVKVVSDAARSARLVKDEPIVK-DDVLEGLTAVV 382 Query: 321 SVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQA----AELLAEMAI--- 373 SV+ +PQF GQTKE L + V VV + + + + + E + Sbjct: 383 SVRFPEPQFDGQTKEVLGTPAATRIVFDVVSRGLRAFFSSTRRVDRQASRAVLEKVVAAA 442 Query: 374 SSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDRE 433 + + + RK ALP KLADC + D +RTELF+VEGDSA G+AK AR+ E Sbjct: 443 RTRRALRAHKEAQRRKNALESAALPAKLADCRSTDASRTELFIVEGDSALGTAKLARNSE 502 Query: 434 YQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDLSQLRYGKICILADAD 492 +QA++P++GKILN + ++L + E I IG S L +RYGK+ I+ DAD Sbjct: 503 FQALLPIRGKILNVQKADLSDMLNNAECAAIIQVIGAGSGRSFSLDAVRYGKVIIMTDAD 562 Query: 493 SDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG--KEVYYALTEEEKEGVLEQ 550 DG HI LL LF ++ R L+ G ++ A+PPL+RI++ K+ Y ++ E +L Sbjct: 563 VDGAHIRCLLLTLFFRYMRPLLDAGRIFAAVPPLHRIEVSGRKDPVYTYSDAELHRLLAD 622 Query: 551 LKRKKGKP-NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAK 609 L R+ + QR+KGLGEM+ QL ETT+DP R L ++T+ D +A ++L+ Sbjct: 623 LDRQGIRYKTPQRYKGLGEMDAAQLAETTMDPAHRVLRRMTL--TDAAAAEAAFELLMGG 680 Query: 610 KRSEDRRNWLQEKG---DMAEIEV 630 R+ ++ D + I+V Sbjct: 681 DVV-PRKEFIAASAATLDRSRIDV 703 >UniRef50_Q59526 DNA topoisomerase 4 subunit B n=9 Tax=Bacteria RepID=PARE_MYCGA Length = 633 Score = 606 bits (1563), Expect = e-172, Method: Composition-based stats. Identities = 222/639 (34%), Positives = 351/639 (54%), Gaps = 22/639 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDV 57 M YN I+VL GLEPVR+RPGMY +T +HL E+ DN+VDEAL G A +++V Sbjct: 1 MVSNYNEKHIKVLKGLEPVRKRPGMYIGSTDTRGLHHLVWELFDNAVDEALNGSANKIEV 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 + D S+ V D+GRG+PV + + V+ + LHAGGKF ++ Y+ SGGLHGVG S Sbjct: 61 VHKKDGSIIVTDNGRGIPVGKNLATNLSTVDTVYTVLHAGGKFDDQAYKVSGGLHGVGAS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEK-VQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 VVNALS+++ V V RDG +Y +++G K +Q L+ VG K GT V FWPD T F + Sbjct: 121 VVNALSRKLIVTVHRDGGMYESIYQDGGKIIQPLKKVGNSTK--HGTIVQFWPDPTIFKN 178 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT-EQRWCYQDGLNDYLAEAVNGLPTLPE 235 +F+ + L + L G++I F DE N Q + +DG+ +YL ++ Sbjct: 179 IQFNPYMIKERLHESSFLFKGLKIVFVDENNPELSQTFIAKDGILEYLKYVNENKKSIS- 237 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 K + VD + E L S+ N + T +GG+H NG +Q +L+ + ++ Sbjct: 238 KIIPFKGDYEKIVVDGCFQYTDNESE-LIISFANSVKTSEGGSHENGFKQAMLETINDYS 296 Query: 296 EYRNI-LPRGVKLSAEDIWDRCAYVLSVKMQD--PQFAGQTKERLSSRQCAAFVSGVVKD 352 + + + D+ + + VLSV++ + + GQTK +L +++ V+ ++ Sbjct: 297 KKYKLINNKDKGFDWSDLKEGLSVVLSVQVPEKIIAYEGQTKNKLFTQEVKVAVAKILTQ 356 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA----LPGKLADCTAQD 408 +L +N A+ L E + + A K K L GKL ++ Sbjct: 357 QLFYFLEENQADAKQLIERFKLIKEAKEAAKKAKENTKKLKSAKSERVLYGKLTPAQQKN 416 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI 468 + E+FLVEGDSAGG+AK RD+ +QAI+PL+GK++N + ++L ++E+ I + Sbjct: 417 PLQNEIFLVEGDSAGGTAKSGRDKRFQAILPLRGKVVNVEKSRLQDLLKNEEILSIISCL 476 Query: 469 GIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLY 527 G + ++ L+Y KI I+ DAD+DG HI LL F ++ + L++ G VY+AL PLY Sbjct: 477 GCGIGNNFNIKNLKYHKIIIMTDADTDGAHIQVLLLTFFYRYMKELIEQGKVYIALAPLY 536 Query: 528 RIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLV 587 +I A ++ + L++L+ K G VQR+KGLGEMN QL TT+DP+ R+L+ Sbjct: 537 KISAKNSNKSAFAWDDYQ--LDELRTKYGSYEVQRYKGLGEMNSEQLWTTTMDPSKRQLI 594 Query: 588 QLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 Q++I + + + + +L+ S R+NW+ E D + Sbjct: 595 QVSIQN--AAQAERKVSILMGDDAS-IRKNWINENVDFS 630 >UniRef50_C6PY14 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY14_9CLOT Length = 653 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 228/654 (34%), Positives = 354/654 (54%), Gaps = 38/654 (5%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y+ A+ L LEPVR RPGMY +T +H E++DNS+DE G + VIL Sbjct: 9 QVYDVTALTSLEKLEPVRVRPGMYIGSTGSKGLHHCIWEILDNSIDEISNGFGDKAIVIL 68 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + D+S+ +ID+GRG+P IHP + VE++ LH GGKF+N Y+ SGGLHGVG +VV Sbjct: 69 NKDKSVTIIDNGRGIPTGIHPVKKKSGVEMVFTELHTGGKFNNDVYKTSGGLHGVGAAVV 128 Query: 120 NALSKRVEVNVRRDGQVYNIAFEN-----------GEKVQDLQVVGTCGKRNTGTSVHFW 168 NALSK V V ++++G +Y FE G V L++ G + TGT V F Sbjct: 129 NALSKWVVVEIKQNGHIYTQRFEYAYDKSLKRDMPGTPVTALKIAGNT--KETGTKVTFL 186 Query: 169 PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT--EQRWCYQDGLNDYLAEA 226 PD+ F + F + L+ A G+ + D+ + E+ + + GL D++ Sbjct: 187 PDKDVFSNTEFKFDVIDERLQELAFQNKGITLKIIDKREDEVVEKEYHSERGLLDFIEYL 246 Query: 227 VNGLPTLPEKPFIGNFAGDTEAV----DWALLWLPEGGELLTESYVNLIPTMQGGTHVNG 282 L P + + + + + + E SYVN IPT + GTH +G Sbjct: 247 NESKTALHTPPILFEGEREVNGISMYSEVCVQFTDSTTE-YIASYVNNIPTTESGTHESG 305 Query: 283 LRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQ 341 + G+ A +E+ + N+L + + +D+ + ++ +K+ +P F GQTK +L + + Sbjct: 306 FKAGMTRAFKEWTKKLNLLKEKDKEFEGDDLREGMTAIVRIKITNPIFEGQTKTKLGNTE 365 Query: 342 CAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA--QRRMRAAKKVVRKKLTSG-PALP 398 ++ + F W+ N A + AI +A + +++ + +KK+ G L Sbjct: 366 AYTMMNDLAYTKFSEWIEDNKDTASSIINNAIDAAARREKIKKINEAEKKKIGKGTAPLA 425 Query: 399 GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAS 458 GK+A CT +D + +E +VEGDSAGGSAKQARDR +Q IMP KGKI+NT + + VL S Sbjct: 426 GKIAVCTLKDPSFSEFIVVEGDSAGGSAKQARDRRFQTIMPSKGKIMNTEKQKLENVLGS 485 Query: 459 QEVHDISVAIGIDP-DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 +E+ + AIG + L+Y KI I++DAD DG HI TL ++ R ++ +G Sbjct: 486 EELKIFNTAIGTGVLQNYKEQDLKYNKIIIMSDADVDGYHIRTLWMTYIYRYMRQIISNG 545 Query: 518 HVYVALPPLYRIDLGKE----VYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573 H+Y+ALPPLY++ + V YA ++EE E +Q+ + +QR+KGLGEMNP Q Sbjct: 546 HLYIALPPLYKVYKQNKNKEIVRYAYSDEELEKEKKQVGK---GALIQRYKGLGEMNPDQ 602 Query: 574 LRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 L ETTL+P TR L Q+TI ED + + M+ +L+ R+N++ + + Sbjct: 603 LWETTLNPETRTLQQITI--EDAAKAEKMVSLLMG-DVVAPRKNYMYKYAVFND 653 >UniRef50_D2R8B1 DNA gyrase, B subunit n=80 Tax=Bacteria RepID=D2R8B1_9PLAN Length = 830 Score = 602 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 224/613 (36%), Positives = 336/613 (54%), Gaps = 30/613 (4%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + YNA++I+ L+ LE VR RP MY +HL EV+DNS+DEA+AGHAK+V VI+ Sbjct: 12 KDYNAESIKHLSDLEHVRLRPAMYIGDITARGLHHLVYEVVDNSIDEAMAGHAKQVSVIV 71 Query: 60 HADQSLEVIDDGRGMPVDIHPE------EGVPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 + D S+ V DDGRG+PV+ H + V +E ++ +L GGKF +Y+ SGGLHG Sbjct: 72 NTDGSVTVEDDGRGIPVERHEQLSASEGRDVSTLEGVMTKLKFGGKFDKDSYKTSGGLHG 131 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF 173 VG++VVN LS+ EV V R G++Y ++E G ++ +G+ + TGT F PD T Sbjct: 132 VGVTVVNFLSQWAEVQVCRGGKIYQQSYETGAPTGPVREIGSTDR--TGTKTTFKPDGTI 189 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 F + ++ L L+ A L GV I FKDE N +CY+ G+ +++ + Sbjct: 190 FQTTKYQYDILHKRLQELAFLNSGVRIKFKDERNGEGAEFCYERGIIEFIEHLNRASDVI 249 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 DT + AL + E E L SYVN I T++GGTHV+G R L + Sbjct: 250 HSDVIYLRGEVDTVGFEIALQYSAEYTENLH-SYVNNIHTVEGGTHVSGFRSALTRTLNA 308 Query: 294 FCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 + + + + + +D + V+SV++ PQF GQTK +L + + V+G V + Sbjct: 309 YGKKEGLFK-DITPTGDDFREGLTAVISVRVAHPQFEGQTKTKLGNGEVDGIVAGAVNEF 367 Query: 354 FILWLNQNVQAAELLAEMAISSAQRRMRAAKK----VVRKKLTSGPALPGKLADCTAQDL 409 +L +N + A+++ + +A+ R A K RK G LPGKL DC ++++ Sbjct: 368 LAKFLEENPKTAKIIVRKGVLAAEAREAARKAKEVLRSRKNALGGGGLPGKLRDCISKEM 427 Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 R EL+LVEGDSAGGSA+ R R++QAI+PL+GKI+N ++ D+VLA++EV + AIG Sbjct: 428 ERCELYLVEGDSAGGSAEGGRLRDFQAILPLRGKIINAYKSREDKVLANEEVQSMIQAIG 487 Query: 470 IDPDSD-DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYR 528 ++ DL++ RY KI I+ DAD DG HI TLL F + +LV +GHVYVA PPL+R Sbjct: 488 TGIGAEIDLTKRRYNKIIIMTDADVDGSHIRTLLLCFFYRQMYSLVANGHVYVAQPPLFR 547 Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 + KE YY T+EE L + ++Q G + + +++ Sbjct: 548 VRSKKETYYVQTDEEMRSQLLSRGIGDTELDLQN----GT--------KFVGDDMKKIAG 595 Query: 589 LTIDDEDDQRTDA 601 + ED Sbjct: 596 ILASMEDALVALE 608 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 525 PLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTR 584 P Y + G+ + ++ +K RFKGLGEMN +LR+TTLDP R Sbjct: 729 PRYILRRGENEIPLKELRTLVASIREMGQKGMSVT--RFKGLGEMNAEELRDTTLDPKNR 786 Query: 585 RLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 LVQ+++ D D M +L+ ++ E RR +++ ++ ++V Sbjct: 787 TLVQVSMR--DAGAADDMFRVLMG-EKVEPRRQFIETHALEVRNLDV 830 >UniRef50_D0RQH0 DNA gyrase subunit B n=2 Tax=Bacteria RepID=D0RQH0_9RICK Length = 834 Score = 601 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 237/640 (37%), Positives = 349/640 (54%), Gaps = 40/640 (6%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDV 57 Y AD+I+VL GL+ VR+RPGMY T +H+ EV+DN++DEALAGH + V Sbjct: 8 KTEYGADSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDTIVV 67 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 ++ D S+ V D+GRG+PV+IH E + A E+I+ +LHAGGKF +K Y+ SGGLHGVG+S Sbjct: 68 KINKDNSVSVSDNGRGIPVEIHKTEKISAAEVIMTQLHAGGKFDHKTYKVSGGLHGVGVS 127 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALSK ++V++ RDG+ Y + FENG L+ +G + GT+V F P F Sbjct: 128 VVNALSKSLKVDIFRDGKKYFVEFENGITKAPLKEIGKSDLK--GTNVTFLPSSEIFTDT 185 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ--RWCYQDGLNDYLAEAVNGLPTL-- 233 +F++S L LK A L G+ I DE + + + G+ +++ + + Sbjct: 186 KFNLSILEKRLKELAYLNKGLNIQLSDERKEKAKILNFKFDGGIKEFVKDLNKLKNKIKN 245 Query: 234 ------PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 E+P + V+ ALLW E + N IP GGTH+ G R + Sbjct: 246 EDSQFTLEEPLYFQSNKNDIDVECALLWNSSYNE-NVLCFTNNIPQKDGGTHLLGFRNSI 304 Query: 288 LDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 + ++ +L + V + +D+ + VLSVK+ DP+F+ QTKE+L S + V Sbjct: 305 TRLINKYANDFGLLKKDKVTIVGDDVREGLICVLSVKVPDPKFSSQTKEKLVSSEVRPVV 364 Query: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRR---MRAAKKVVRKKLTSGPALPGKLAD 403 + + LW +QN + A+ + I +A R +A + V RK +LPGKLAD Sbjct: 365 ETITNEKISLWFDQNPKIAKTIIGKIIQAAVAREVARKARESVRRKNAIDITSLPGKLAD 424 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW----------EVSSD 453 C + D+N+TELF+VEGDSAGGSAKQAR+RE+QA++PL+GKILNT+ + Sbjct: 425 CQSNDINKTELFIVEGDSAGGSAKQARNREFQAVLPLRGKILNTFVEAKNNSPDVKKVFS 484 Query: 454 EVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALF-VKHFRA 512 ++L+S E+ + AIG + +L +LRYGKI I+ DAD DG HI TLL F K F Sbjct: 485 KMLSSNEIVTLINAIGTGVEPFELEKLRYGKIVIMTDADVDGSHIRTLLLTFFNNKPFNE 544 Query: 513 LVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGV-LEQLKRKKGKPNVQRFKGLGEMNP 571 L+K GH+Y+A PPLY+I GK V Y E + E + +E +K + K Sbjct: 545 LIKKGHIYIAQPPLYKIKSGKTVNYLKNENDLEKLAIENSLKKIESVTFKNNKKFNYDK- 603 Query: 572 MQLRETTLDPNTRRLVQLTIDDEDDQRTDAM-MDMLLAKK 610 T + + + D D + + + + KK Sbjct: 604 -----TFIVQSYELYKLIKSIDGDKEILEQLSIVGAFTKK 638 Score = 76.2 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 8/84 (9%) Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRT------DAMMDMLL 607 K ++QRFKGLGEMNP +L ETTL+P L+++ + + + + D + L+ Sbjct: 752 GKKNLSLQRFKGLGEMNPDELWETTLNPENNSLLKVNYSELNGEISEPSSSDDEIFFTLM 811 Query: 608 AKKRSEDRRNWLQEKG-DMAEIEV 630 + S+ R+N++ +++ +++ Sbjct: 812 GEDVSK-RKNFINSNAINVSNLDI 834 >UniRef50_P78016 DNA topoisomerase 4 subunit B n=3 Tax=Mycoplasma RepID=PARE_MYCPN Length = 635 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 219/641 (34%), Positives = 356/641 (55%), Gaps = 24/641 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDV 57 M Y+ I++L GL+ V++RPGMY +T +HL E++DN VDE L+G A + V Sbjct: 1 MKNNYSEANIKILKGLDAVKKRPGMYIGSTDSRGFHHLLWEILDNCVDEVLSGFANTIAV 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 +LHA+ + V D+GRG+P + H + + ++ + LHAGGKF N +Y+ +GGLHGVG S Sbjct: 61 VLHAENQITVSDNGRGIPFETHSDSKISTIDTVFTYLHAGGKFDNDSYKIAGGLHGVGAS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQ-VVGTCGKRNTGTSVHFWPDETFFDS 176 VVNALS +++V V+R G+VY +ENG K++ +G GTSV F PD F Sbjct: 121 VVNALSDQLQVTVKRQGKVYRSVYENGGKIKQKAHCIGNAKIDEHGTSVTFRPDPKVFKK 180 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEI-NNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 F + LK A L +++TF DE + ++ + + G++ YL E + + Sbjct: 181 IHFDSELIRARLKELAFLFKKLQLTFVDETGSGEKEVFFTEAGISQYLDELNADSKQIAQ 240 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 K F+ + D ++ A+ +G + S+ N I T +GG+H RQ + D + +C Sbjct: 241 KIFV-SGTEDDIELE-AVFQFIDGEDEKLLSFANSIRTSEGGSHEASFRQSVGDVINNYC 298 Query: 296 EYRNILPR-GVKLSAEDIWDRCAYVLSVKMQD--PQFAGQTKERLSSRQCAAFVSGVVKD 352 N L A +I + ++ V + + F GQTK +L S++ A V + + Sbjct: 299 RKYNFLKERDKNFEASEIREGLNGIIKVNLPEKIIAFEGQTKSKLFSKEVKAVVQKLTQK 358 Query: 353 AFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA----LPGKLADCTAQD 408 F +L +N A+L+ E + + R ++ KK S P L GKLA ++ Sbjct: 359 HFFQFLERNSVDAKLIVEKLFYNRKLRQELKQQRQIKKNLSNPKAERILFGKLAPAQSKK 418 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDE-VLASQEVHDISVA 467 + ELF+VEGDSAGG+AK RDR QAI+PL+GK+LN ++++ + + ++E+ + Sbjct: 419 VAERELFVVEGDSAGGTAKMGRDRFLQAILPLRGKVLNVEKINNKKEAINNEELLTLIFC 478 Query: 468 IGIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPL 526 IG + + +Y KI I+ DAD+DG HI LL F ++ + L++ GH+Y+ALPPL Sbjct: 479 IGTGIGNNFTIRDRKYDKIIIMTDADNDGAHIQILLLTFFYRYMKPLIEKGHIYLALPPL 538 Query: 527 YRID-LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 Y+ + K+ Y TE+E E + NVQR+KGLGEMN QL ETT++P TR+ Sbjct: 539 YKFEGRDKKARYLWTEQELEQYRAK----HSHFNVQRYKGLGEMNADQLWETTMNPMTRK 594 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 L+Q+ +D+ + + +++ + ++E R++W++ + + Sbjct: 595 LIQVKLDNF--IQAEKQINVFMG-DKTELRKSWIEANINFS 632 >UniRef50_Q9ZLX3 DNA gyrase subunit B n=50 Tax=Epsilonproteobacteria RepID=GYRB_HELPJ Length = 773 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 229/617 (37%), Positives = 345/617 (55%), Gaps = 26/617 (4%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q Y + +I+VL GLE VR+RPGMY T +H+ EV+DN+VDE++AG +++ L Sbjct: 2 QNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINITL 61 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 + S V D+GRG+PVDIHP E +PA ++L LHAGGKF N Y+ SGGLHGVG+SVV Sbjct: 62 TEEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVV 121 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC-GKRNTGTSVHFWPDETFFDSPR 178 NALSKR+ + ++++GQ+Y FE G + +L+++G + +GT++ F+PDE+ + Sbjct: 122 NALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVVE 181 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238 F L K A L G++I+FK+E ++ + Y+DGL ++ ++ P F Sbjct: 182 FQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYKDGLKQFVKDSAKKELLTPIIAF 241 Query: 239 IGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 +++ AL + + E S+VN I T +GGTH G + GL A+ ++ + Sbjct: 242 KSMDEETRTSIEVALAYADDYNENT-LSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDNN 300 Query: 299 NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWL 358 +S EDI + V+S+KM +P F GQTK +L S A VS +V D +L Sbjct: 301 IKTKESRPIS-EDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFL 359 Query: 359 NQNVQAAELL---AEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELF 415 +N A+++ A +A + + +A + +K S LPGKLADC ++D +E+F Sbjct: 360 EENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESEIF 419 Query: 416 LVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS- 474 LVEGDSAGGSAKQ RDR +QAI+PLKGKILN + ++L S+E+ ++ A G Sbjct: 420 LVEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQES 479 Query: 475 DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKE 534 D+ +LRY KI I+ DAD DG HI TLL F ++ R L++ GHV++A PLY+ GK Sbjct: 480 FDIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYKKGKT 539 Query: 535 VYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQL-------RETTLDPNTRR-- 585 Y + L + G+G+ + M L R T L+ R Sbjct: 540 EIYLKDSVALDHFLIEHGINSVDIE-----GIGKNDLMNLLKVARHYRYTLLELEKRYNL 594 Query: 586 --LVQLTIDDEDDQRTD 600 +++ I+ +D D Sbjct: 595 LEVLRFLIETKDALSLD 611 Score = 83.1 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 5/95 (5%) Query: 538 ALTEEEKEGVLEQLKR-KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDD 596 L ++ LE+++ K N+QR+KGLGEMNP L ETT+ R L++L I ED Sbjct: 682 FLENKDILAFLEEVENYAKKGANIQRYKGLGEMNPNDLWETTMHKENRSLIKLKI--EDL 739 Query: 597 QRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 ++TDA+ + + E RR ++Q D+ +++V Sbjct: 740 EKTDAVFSLCMG-DEVEPRRAFIQAHAKDVKQLDV 773 >UniRef50_UPI00016C54E0 DNA gyrase subunit B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54E0 Length = 810 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 195/549 (35%), Positives = 297/549 (54%), Gaps = 11/549 (2%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y D ++ L +R RPGMY T +HL EV+ NSVDEALAG K + + +H Sbjct: 10 GYTEDNLQTLKDAAHIRHRPGMYIGNTDIEGMHHLVWEVVYNSVDEALAGFCKNIFITVH 69 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 +D+S+ V DDGRG+PV + + G +E L + GKF+N Y+ S GLHG+G +N Sbjct: 70 SDESITVSDDGRGIPVGVKADTGKSTLEEALTIAGSSGKFNNDAYKTSAGLHGMGAKAMN 129 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS+ ++RDG+VY + FE G L+ +G K TGT++ F PD F F Sbjct: 130 ALSEWCTAEIKRDGRVYKMEFEKGYATSKLEDLGPAPKGQTGTTITFKPDPEKFGDILFD 189 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240 RL + + L G+++ DE + + G+ +Y+ T Sbjct: 190 YDRLGTRFQQISFLNKGLKLALADERVGKSDTFHSERGIAEYVEVLNRSEQTNYPL-IYI 248 Query: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300 N D V+ + +L + N GGTH++G R GL A+ + + N+ Sbjct: 249 NKQIDGVTVEVCFQYTQGETKLEM-CFTNNAYNKDGGTHLSGFRGGLTRAIGHYGKKANL 307 Query: 301 LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ 360 ++L +D + V+++ P+F QTK +L+S + S VV + +L + Sbjct: 308 FKE-IELRGDDFREGLTAVINISHPQPKFESQTKVKLTSPEVEGQTSSVVYEVLSDYLER 366 Query: 361 NVQAAELLAEMAISSAQRRMRAAK----KVVRKKLTSGPALPGKLADCTAQDLNRTELFL 416 N + AE + + + +A+ R+ A K RK + LPGKL DC+++D TELFL Sbjct: 367 NPKEAERICKKVLLTAEARIAAKKARDAVKGRKDALNSGGLPGKLYDCSSRDRENTELFL 426 Query: 417 VEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-D 475 VEGDSAGGSA+ RDRE+QAI+PL+GK+LN + +++L + E+ + A+G+D D+ + Sbjct: 427 VEGDSAGGSAESGRDREFQAILPLRGKVLNVEKAKFEKLLENNEISALISAVGVDIDNVE 486 Query: 476 DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEV 535 D+S++RYGKI I+ DAD DG HI TLL F + R L++ GHV+VA PPLY++ KE Sbjct: 487 DVSKVRYGKIIIMTDADVDGQHIRTLLLTFFFRQMRKLIEAGHVFVARPPLYKVTQKKET 546 Query: 536 YYALTEEEK 544 + + EE Sbjct: 547 RFIQSREEM 555 Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 6/109 (5%) Query: 523 LPPL-YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDP 581 PP+ Y +D ++ E V+E + + V RFKGLGEM+P +L TTLDP Sbjct: 703 EPPVRYTLDHDGSNKSLVSLREL--VIEIRRLGEKGIAVTRFKGLGEMDPEELWATTLDP 760 Query: 582 NTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 R L+++T++ D + + M L+ K+ +DR+ ++ + ++ Sbjct: 761 QYRTLLKVTLN--DAFKAEEMFRTLMGKE-VQDRKAFIFSNSLKSVEDI 806 >UniRef50_D0WQJ3 Putative DNA gyrase subunit B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQJ3_9ACTO Length = 735 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 250/718 (34%), Positives = 362/718 (50%), Gaps = 93/718 (12%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 ++Y A ++VL GLE VR+RPGMY +T H E+IDN+VDEAL GHA V+V L Sbjct: 16 ESYTARHLQVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNAVDEALEGHADAVEVRL 75 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 +AD S+EV D+GRG+PVD P G+ VE++ +LHAGGKF +Y SGGLHGVG SVV Sbjct: 76 YADGSVEVRDNGRGVPVDEVPGVGLSGVEVVYTKLHAGGKFGGGSYGSSGGLHGVGASVV 135 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEK---------------------VQDLQVVGTCGK 158 NALS+R++V V R G+ Y + F GE L VVG K Sbjct: 136 NALSERMDVQVDRGGKTYQMQFHRGEPGRFSDGASGPDPRAPFSAFTESSVLDVVGKVAK 195 Query: 159 RNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN---------- 207 +GT V +W D F S FS L + A L PG+ I+ DE Sbjct: 196 NKSGTRVRYWADPEIFLASAAFSYEELVERARQTAFLVPGLTISLVDEREGAAGENAAGE 255 Query: 208 ---------------NTEQRWCYQDGLNDYLAEAV-----------NGLPTLPEKPFIGN 241 + + + G D++ G T EK + + Sbjct: 256 NAEGEGDEGQAPHEGPRTETFRFDGGTVDFVDFLAPDAAVTATMRLTGEGTFAEKVPVLD 315 Query: 242 FAGDT---------EAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 AVD AL W + E ES+VN+I T GGTH +G QGL+ +R Sbjct: 316 AESGHLVSREVERAVAVDVALRWGKD-YETRVESFVNIIRTPGGGTHQSGFEQGLMKVVR 374 Query: 293 EFCEYR----NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 E + + ++ +D+ V++V++ +PQF GQTKE L + VSG Sbjct: 375 SLVESNSRRLKMSAKDPRIEKDDVLAGLTAVVTVRLPEPQFEGQTKEILGTSAVRGIVSG 434 Query: 349 VVKDAFILWL----NQNVQAAELLAEMAISSAQRRMR---AAKKVVRKKLTSGPALPGKL 401 VV+ L L E ++ + R+ + RK +LP KL Sbjct: 435 VVERELGAILGSSKRDQKTETSRLLEKVVAEMRARVTARMHKEISRRKNALEASSLPAKL 494 Query: 402 ADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV 461 ADC ++D+ TELF+VEGDSA G+AK AR E+QA++P++GKILN + S+ ++L ++EV Sbjct: 495 ADCRSEDVAETELFIVEGDSALGTAKLARSSEFQALLPIRGKILNVQKASTADILKNKEV 554 Query: 462 HDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 +I +G + DL RYGK+ ++ DAD DG HI TLL LF ++ R LV+ G VY Sbjct: 555 SEIIQVVGAGSGRTFDLPAARYGKVIMMTDADVDGAHIRTLLLTLFFRYMRPLVQEGRVY 614 Query: 521 VALPPLYRIDL------GKEVYYALTEEEKEGVLEQLKRKKGKPN--VQRFKGLGEMNPM 572 A+PPL+RI++ K Y +E++ L +L+R +QR+KGLGEM+ Sbjct: 615 AAVPPLHRIEVSGGKGGKKSYIYTYSEDQLHAELRKLERAGKSYREPIQRYKGLGEMDAH 674 Query: 573 QLRETTLDPNTRRLVQLTIDDEDD-QRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 QL ETT+DP+ R L ++ ++DE + + ++L+ RR ++ E + + Sbjct: 675 QLAETTMDPSRRTLRRIRMEDERALMEAETVFELLMGND-VAPRREFIVEGAAAVDRD 731 >UniRef50_Q98RQ4 DNA gyrase subunit B n=13 Tax=cellular organisms RepID=Q98RQ4_GUITH Length = 684 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 223/639 (34%), Positives = 361/639 (56%), Gaps = 26/639 (4%) Query: 10 IEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVILHADQSLE 66 I VL GLEPVRRRPG++ +T +HL E++DNSVDE++AG ++VDVI+++D+S+ Sbjct: 49 ITVLEGLEPVRRRPGVFIGSTGLKGFHHLVYEIVDNSVDESMAGFCEKVDVIINSDKSVT 108 Query: 67 VIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRV 126 + D+GRG+P D+HP A+E +L LHAGGKF Y+ SGGLHGVG+SVVN LS+ + Sbjct: 109 IRDNGRGIPTDLHPITNKTALETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVNGLSEYL 168 Query: 127 EVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF-FDSPRFSVSRLT 185 +N +R+ + + F G+K+ + + GT+++F PD F F + Sbjct: 169 NINTQRNQRKIGMRFVRGKKISECNISSFKKNIINGTTINFKPDYQIFFSEFDFDSYVIG 228 Query: 186 HVLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFA 243 L A L +++ +D + + + G+ +Y+ E L P I + Sbjct: 229 GRLNELAFLNSNLKLLLEDRRSKIIKSSLFLHDGGIMEYINEMTINKKRLH-NPIILSKI 287 Query: 244 GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR 303 + ++ +W E + S+VN I T++GGTHV+G +QG+ + + + Sbjct: 288 FNNSQIEIGFVWSSEQYQENILSFVNNIRTVEGGTHVDGFKQGITKLVNLLSKKKIKSKE 347 Query: 304 GVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA-FILWLNQN 361 + +S E I + +++VK +P+F GQ K +L + V ++K+ I ++ N Sbjct: 348 KLNSISGEFIREGLTCLINVKTSEPEFEGQIKSKLGNPDIKFLVENLIKEEGEIHFIENN 407 Query: 362 VQAAELLAEMAISSA---QRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVE 418 ++ E AIS+ + +A + V +K + G LPGKL+DC+ ++ +E+F+VE Sbjct: 408 SNLLNIVLEKAISAMNAYEASKKAKELVRKKSILEGITLPGKLSDCSEKNPQFSEIFIVE 467 Query: 419 GDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP--DSDD 476 GDSAGGSAKQARDR +QAI+PL+GKI+N + ++ + E+ + A+G+ + +D Sbjct: 468 GDSAGGSAKQARDRRFQAILPLRGKIINIEKNDEKKIYNNTEIQSLISALGLGVRGNDED 527 Query: 477 LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID------ 530 LS LRY KI I+ DAD DG HI TLL F ++ + L+ G VY+A PPLY+I+ Sbjct: 528 LSNLRYHKIIIMTDADVDGAHIRTLLLTFFYRYQKELIDKGFVYIACPPLYKIENKKNKN 587 Query: 531 LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLT 590 L K Y +E E E +++ K +QRFKGLGEM P QL +TT+ P R L ++ Sbjct: 588 LDKNTQYCYSEGELEYIIQSSHFNKN---IQRFKGLGEMMPEQLWKTTMSPEMRILKKIK 644 Query: 591 IDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + D +R D + ++L+ K +R+ ++Q + + +I+ Sbjct: 645 LS--DAKRADKIFEVLMGSK-VPERKKFIQIQASLIKID 680 >UniRef50_Q4AAR9 Topoisomerase IV subunit B n=9 Tax=Mycoplasma RepID=Q4AAR9_MYCHJ Length = 642 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 212/638 (33%), Positives = 349/638 (54%), Gaps = 21/638 (3%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 TY+ + +++L GLE VR+RPGMY +T + L E+ DN++DEA+AG A + +I++ Sbjct: 2 TYSVEKLKLLKGLEAVRKRPGMYIGSTDKNGLHQLIWEIFDNAIDEAIAGFANEISLIIN 61 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 +D S+E+ D+GRG+P +IH + G VEL+ LH+G KFS Y+ +GGLHGVG SVVN Sbjct: 62 SDNSIEISDNGRGIPTEIHKKTGKTGVELVFSELHSGAKFSTDIYKTAGGLHGVGSSVVN 121 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS+++EV + RD +++ +F NG K++ + TGT + FWPD + F F Sbjct: 122 ALSEKLEVYINRDKKLFYTSFINGGKIETRTKIIGKSA-TTGTKIRFWPDFSLFSHSEFD 180 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240 + L+ L ++I F D NN E+++ + G+ ++ N + +K Sbjct: 181 SEMIISRLRETCFLINNLKINFFDTKNNIEKKFLCERGIESFIEFLNNDQEKIHDKVITF 240 Query: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300 V++ ++ + S+VN + T GG+H NG + G L A+ + + N+ Sbjct: 241 KEKMQEIIVEFGFQYVNSQ-QENIISFVNNVKTNLGGSHENGFKSGFLKAINTYGQQNNL 299 Query: 301 LPRGVKLSAEDIWDRCAYVLSVKMQDP--QFAGQTKERLSSRQCAAFVSGVVKDAFILWL 358 L L D + VLS+++ + +F GQTK +LS+ V+ + + Sbjct: 300 LKTKQILEFSDAKVGLSAVLSLRIPESILEFVGQTKNKLSTILAKTVTEEVIFTNLMTFF 359 Query: 359 NQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA-----LPGKLADCTAQDLNRTE 413 N + A + + + +R ++ ++ K + L GKL ++ E Sbjct: 360 ALNKEVASKIINFILETYTQRQKSKLSIIESKTSKSITKEKRILSGKLTPANSKKAMNRE 419 Query: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD 473 LFLVEG+SAGGSAK AR+RE+QAI+PLKGKI+N + ++L ++E+ I A+G Sbjct: 420 LFLVEGESAGGSAKLARNREFQAILPLKGKIVNAQKTRLIDLLKNEEIIAIISALGTGIG 479 Query: 474 -SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID-L 531 + +L L YGKI I+ DAD+DG HI L+ H R L++ G VY+A PPLYRI Sbjct: 480 QNFNLKNLNYGKIIIMTDADNDGAHIQILILTFLFLHMRPLIEKGFVYIAQPPLYRISEK 539 Query: 532 GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 G++ Y EE+ E ++ +QR+KGLGEMN QL +TT+DP R L ++ I Sbjct: 540 GRKDIYIWDEEKFEKYIKNSTN----LQIQRYKGLGEMNANQLWQTTMDPERRTLEKVLI 595 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++ + + +L+ +R++ R++W+++ + + + Sbjct: 596 ENY--PKVEKNFQILMG-ERADLRKSWIEKNVNFSLED 630 >UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota RepID=TOP2B_HUMAN Length = 1626 Score = 590 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 131/652 (20%), Positives = 242/652 (37%), Gaps = 52/652 (7%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT-------------------------RPNHLGQEVID 41 + T LE + RP Y + + E++ Sbjct: 52 ERVYQKKTQLEHILLRPDTYIGSVEPLTQFMWVYDEDVGMNCREVTFVPGLYKIFDEILV 111 Query: 42 NSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK 99 N+ D + V + + + + ++G+G+PV H E V LI +L Sbjct: 112 NAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSN 171 Query: 100 FSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCG 157 + + + +GG +G G + N S + V + + + N + Sbjct: 172 YDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFD 231 Query: 158 KRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD 217 + T + F PD + F + + ++ +A G K N + + Sbjct: 232 GED-YTCITFQPDLSKFKMEKLDKDIVA-LMTRRAYDLAGSCRGVKVMFNGKKLPV---N 286 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 G Y+ V L E + W + S+VN I T +GG Sbjct: 287 GFRSYVDLYVKDK--LDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGG 344 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 HV+ + ++ + E + +N GV + + + ++ +++P F QTKE + Sbjct: 345 RHVDYVVDQVVGKLIEVVKKKN--KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENM 402 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 + + + + + F N E + AQ ++ V+ G Sbjct: 403 TLQPKSFGSKCQLSEKFFK-AASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPK 461 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDE 454 D + L L EGDSA A R+ + PL+GKILN E S + Sbjct: 462 LDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQ 521 Query: 455 VLASQEVHDISVAIGIDPDS-----DDLSQLRYGKICILADADSDGLHIATLLCALFVKH 509 ++ + E+++I +G+ + L LRYGKI I+ D D DG HI LL + Sbjct: 522 IMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHN 581 Query: 510 FRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEM 569 + +L+KHG + + P+ + K+ + E + + ++ +K ++ +KGLG Sbjct: 582 WPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKA-WKIKYYKGLGTS 640 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 + +E D R++ EDD + + +KK+ +DR+ WL Sbjct: 641 TAKEAKEYFADMERHRILFRYAGPEDDA----AITLAFSKKKIDDRKEWLTN 688 >UniRef50_C5B4P3 DNA gyrase, subunit B n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4P3_METEA Length = 816 Score = 588 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 222/587 (37%), Positives = 316/587 (53%), Gaps = 31/587 (5%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTT----RPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+A +I+VL GLE VR+RPGMY T +H+ EV+DN +DE LAGHA RV V L+ Sbjct: 10 YDASSIQVLEGLEAVRKRPGMYIGDTNDGTGFHHMVWEVVDNGIDECLAGHADRVTVTLN 69 Query: 61 ADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 AD S+ V+D+GRG+PVD HP+ G A E+I+ LHAGGKF +Y+ SGGLHGVG+SVV Sbjct: 70 ADGSVTVVDNGRGIPVDPHPKYPGKSAAEIIMTVLHAGGKFDQNSYKVSGGLHGVGVSVV 129 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPR 178 NALS +E+ + R G+ + +AFE+GE ++ VG R GTSV F P F Sbjct: 130 NALSSLLELTIWRGGREHYMAFEHGEPAGPIRDVGDAKGRR-GTSVTFTPSLRTFTGVVE 188 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR--WCYQDGLNDYLAEA--VNGLPTLP 234 FS + + L+ A L GV I F D Y+ G+ +Y+ G + Sbjct: 189 FSAAVIERRLRELAFLNSGVRIVFHDRRVKDVDPVEMYYEGGVGEYVGYIDRTAGRDRVI 248 Query: 235 EKPFIGNFAGDT----------EAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLR 284 +P + ++ AL W E + + N IP GGTHV G + Sbjct: 249 ARPIVVRTERSVEVEGNPGPIPVGIEVALQWNDSTTESVLP-FTNNIPQTDGGTHVQGFK 307 Query: 285 QGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAA 344 L + + + RN L LS +D+ + ++SVK+ DP+FA QTK +L S + + Sbjct: 308 TALTRSFMAYVD-RNPLKTKTGLSGDDLREGLTAIVSVKLPDPKFASQTKAKLVSNEVSG 366 Query: 345 FVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAK---KVVRKKLTS-GPALPGK 400 V V +A WL++N A + + A+ +A R A + V RK + +LPGK Sbjct: 367 PVQSAVGEALATWLDENPADARKVIDKAVEAAAAREAAKRAREMVRRKTVLDDITSLPGK 426 Query: 401 LADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE 460 LADC +D +++E+ +VEGDSAGGSAKQ RD E+QA++PL+GKILNT D ++ + Sbjct: 427 LADCRERDPSKSEILIVEGDSAGGSAKQGRDSEFQAVLPLRGKILNTETARLDRIMKNAA 486 Query: 461 VHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGH 518 V + A+G D ++RY +I I+ DAD DG HI TLL A F +H L+ G Sbjct: 487 VGTLVKALGCGIGKGSHDPDKVRYHRIIIMTDADVDGAHIRTLLLAFFFRHMPELINRGF 546 Query: 519 VYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKG 565 VY A PPLY I+ + + + L +L + +R G Sbjct: 547 VYKAEPPLYSIEKKGRKTFLRDDVALDRELLRLGSEG--IAFRRADG 591 Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 + R+KGLGEM QL ETTLDP R +VQ+ ++D + R +D L+ K SE Sbjct: 743 GGKGLTIGRYKGLGEMTAQQLSETTLDPTARSIVQIRVEDAEAARAK--VDQLMGSK-SE 799 Query: 614 DRRNWLQEKGDMAEIE 629 R++ L+ +G + E++ Sbjct: 800 PRKHLLETRGHLVEVD 815 >UniRef50_A6G5S5 DNA gyrase subunit B n=11 Tax=Bacteria RepID=A6G5S5_9DELT Length = 872 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 217/580 (37%), Positives = 311/580 (53%), Gaps = 27/580 (4%) Query: 5 YNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHA 61 Y+ +I L GLE VR+RPGMY T + + E++DNS+DEALAGH K++ +++H Sbjct: 35 YDESSISHLEGLEAVRKRPGMYIGDTDVTGLHKMVFEILDNSIDEALAGHCKQIQIVIHE 94 Query: 62 DQSLEVIDDGRGMPVDIHPEEG--VPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 D+S+ V DDGRG+P EG VPA + +LH GGKF N Y+ SGGLHGVG++VV Sbjct: 95 DESISVEDDGRGIPTGPMEVEGKMVPAAIAVFTKLHVGGKFDNAAYKVSGGLHGVGVTVV 154 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRF 179 NALS +E+ ++R+G+V+ FE GE ++L VVG R GT V F D + R Sbjct: 155 NALSDWLELEIKREGKVFTARFERGEVARELDVVGETEAR--GTKVTFHADPLIYTGVRV 212 Query: 180 SVSRLTHVLKAKAVLCPGVEITFKDEI------NNTEQRWCYQDGLNDYLAEAVNGLPTL 233 L+ + + L GV IT D EQ + + G+ ++ + Sbjct: 213 DFDTLSSRFRELSYLTEGVNITLTDLRPTINGEKKREQSFDGEGGVASFVELLTAKRTRI 272 Query: 234 PE-------KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 PF V AL W E + Y N I GGTH+ GLR Sbjct: 273 GAMIELRSQVPFEFEGQDHELGVQVALQWTDAYHE-MVHCYTNNIANRDGGTHLTGLRTS 331 Query: 287 LLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 345 L + + +N+L L+ ED+ + ++SVK DP+F QTKE+L S + A Sbjct: 332 LTRVVNGYAGDKNLLKGHKGSLAGEDVREGLVAIISVKHPDPKFNSQTKEKLVSSEVTAL 391 Query: 346 VSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA---KKVVRKKLTSGPALPGKLA 402 V V +A + + A+L+ E A+ +A+ R A + + RK + G +LPGKLA Sbjct: 392 VGTAVTEALSRHFEEKPKDAKLVVEKALLAARARAAARKARETITRKGVLDGLSLPGKLA 451 Query: 403 DCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVH 462 DC +D ELF+VEGDSAGGSAKQ RDR+ QAI+PL+GKILN + D++L+SQE+ Sbjct: 452 DCQEKDPELAELFIVEGDSAGGSAKQGRDRKVQAILPLRGKILNVEKARIDKILSSQEIV 511 Query: 463 DISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 + A+G D + +LRY KI I+ DAD DG HI TLL F +HF +++ G++Y Sbjct: 512 TLITALGTGIGEDTYSIDKLRYHKIIIMTDADVDGSHIRTLLLTFFFRHFVEIIERGYLY 571 Query: 521 VALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNV 560 VA PPLY++ GK+ Y E + + + + Sbjct: 572 VAQPPLYKVKAGKKERYIKNEGALDEFIVSNAVADLELEI 611 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 4/78 (5%) Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 + ++QR+KGLGEMNP QL ETT+DP R L+Q+ I ++D D + +L+ Sbjct: 798 GRSGLSIQRYKGLGEMNPDQLWETTMDPENRELLQIKIAEKD--IADEVFTVLMG-DEVA 854 Query: 614 DRRNWLQEKG-DMAEIEV 630 RR ++ E + ++V Sbjct: 855 PRREFITENALNTRNLDV 872 >UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K4K4_SCHJY Length = 1499 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 140/659 (21%), Positives = 261/659 (39%), Gaps = 50/659 (7%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + + ++ E V RRP Y + + E+I Sbjct: 71 SQQYQRISPREHVLRRPDTYIGSVEKTEMPMWVYDSEQNKMVYKEVNIVPGLYKIFDEII 130 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + + V + + + V ++G+G+PV+IH +EG+ ELI L Sbjct: 131 VNAADNKVRDPTMNTLKVEIDPEANVISVYNNGKGIPVEIHEKEGIYIPELIFGHLLTSS 190 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S V + Y + + V Sbjct: 191 NYDDNQKKVTGGRNGYGAKLCNIFSHEFTVETADKLRMKKYKQTWTENMSKKSEPKVVDM 250 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 + + T + F PD F + L V+K + G K +NN Sbjct: 251 KRADEYTKITFKPDLAKFGMTKLD-DDLVSVVKRRVYDMAGTIPDIKVFLNNERINI--- 306 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 Y+ V+ L + D W + + G+ S+VN I T +G Sbjct: 307 KNFRKYVELFVSSLRNRTDSTKPPTILYDRPNERWEVAYTLSDGQFKNISFVNSIATTRG 366 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 GTHVN + ++ ++ +N + L I + ++ ++ +P F QTKE Sbjct: 367 GTHVNYVADEIVKRVQAEFSKKN---KHAALKPFQIKNNLWLFINCQIVNPSFDSQTKET 423 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA 396 L+++ A + D F L + + + +E+A + A ++M R ++T P Sbjct: 424 LTTKPSAFGSKCDLSDTFFKQLIK-SEIIAVCSELAKAKADQQMSKTDGKSRSRITGLPK 482 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSD 453 L ++ + L L EGDSA R+Y + PL+GK+LN E S + Sbjct: 483 LSD-ANKAGTRESKKCTLILTEGDSAKTLVVSGLGVVGRDYYGVYPLRGKLLNVREASYN 541 Query: 454 EVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 +++ ++E+ I +G+ + LRYG + I+ D D DG HI L+ + Sbjct: 542 QIINNKEIQAIKKILGLAHNKKYTSTDGLRYGHLMIMTDQDHDGSHIKGLIINYLESTYP 601 Query: 512 ALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMN 570 +L+ G + + P+ R G+E+ T E + ++ +++ +KGLG + Sbjct: 602 SLLHLEGFLIEFITPIVRCRKGREIISFFTLPEFDYW-KENNNNGRGWSIKYYKGLGTSD 660 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++E + TI D + + ++DM +KK+++ R+ WL+ I+ Sbjct: 661 AKDMKEYFSALDRHIKQFHTIQDGE----NDLIDMAFSKKKADVRKEWLRTYHPGLYID 715 >UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA Length = 1462 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 138/659 (20%), Positives = 255/659 (38%), Gaps = 52/659 (7%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT------------------------RPNHLGQEVIDN 42 + + T LE + RP Y + + E++ N Sbjct: 20 EEMYQKKTQLEHILLRPDTYVGSIEKHTQNLWVYENDEMVHRAVSYVPGLYKIFDEILVN 79 Query: 43 SVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 + D + V + + ++ V ++G G+PV+IH EE V ELI L + Sbjct: 80 AADNKQRDPSMDSLKVTIDPEANTVSVYNNGDGVPVEIHQEEKVYVPELIFGHLLTSSNY 139 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGK 158 + + +GG +G G + N S + + Y F N + V+ C Sbjct: 140 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGRRLKKYKQVFSNNMGTKCEPVITKCKA 199 Query: 159 RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRW-CYQD 217 T V F PD F + + K + T K E+N T R+ ++D Sbjct: 200 SENWTKVTFKPDLEKFKMAYLEEDVVALMKKRVLDMAGCFGKTVKVELNGTLIRFKSFRD 259 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 + +L A P + W + G+ S+VN I T++GG Sbjct: 260 YADLFLKCAEKSKPMPLPRI------HAKVGDRWEICISLSDGQFQQVSFVNSIATIKGG 313 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 THV+ + + + + + + A + + ++ + +P F QTKE L Sbjct: 314 THVDYITNQITTYIMNKVNKK---KKDANVKAHTVKNHLWVFVNSLIDNPAFDSQTKETL 370 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 ++RQ + V ++ + + + + L A + ++ ++L Sbjct: 371 TTRQASFGSKCDVPESMLKDVEK-SGIVDTLLSWADFKQSKDLKKTDGTKTQRLRGC--K 427 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDE 454 + ++ + L L EGDSA A R++ + PL+GK+LN E SS + Sbjct: 428 AEDANEAGGRNSEKCTLILTEGDSAKALAMAGLSVVGRDHYGVFPLRGKLLNVREASSKQ 487 Query: 455 VLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRA 512 ++ ++E+ +I +G+ + + ++ LRYG + I+AD D DG HI LL + + Sbjct: 488 IMDNEEIQNIKKILGLQQNKEYTNVKSLRYGHLMIMADQDHDGSHIKGLLINFIHSFWPS 547 Query: 513 LVK-HGHVYVALPPLYRIDL-GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMN 570 L+K + P+ R K + + E E E+L ++ +KGLG Sbjct: 548 LLKVPSFLVEFTTPVIRASHPNKTITSFYSMPEYEAWKERLGNSATSWKIKYYKGLGTST 607 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 P + RE D R + DD+ +++ +KK++E R+ W++ + Sbjct: 608 PQEGREYFSDLGRHRKDFIW----DDELDGNAIELAFSKKKAEGRKIWMRNFEPGTCRD 662 >UniRef50_UPI0000DA3D74 PREDICTED: similar to topoisomerase (DNA) II beta n=1 Tax=Rattus norvegicus RepID=UPI0000DA3D74 Length = 1445 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 131/652 (20%), Positives = 241/652 (36%), Gaps = 52/652 (7%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT-------------------------RPNHLGQEVID 41 + T LE + RP Y + + E++ Sbjct: 40 ERVYQKKTQLEHILLRPDTYIGSVEPLTQLMWVYDEDVGMNCREVTFVPGLYKIFDEILV 99 Query: 42 NSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK 99 N+ D + V + + + + ++G+G+PV H E V LI +L Sbjct: 100 NAADNKQRDKNMTCIKVSIDPESNIISIWNNGKGIPVVEHKVEKVYVPALIFGQLLTSSN 159 Query: 100 FSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCG 157 + + + +GG +G G + N S + V + + + N + Sbjct: 160 YDDDEKKVTGGRNGYGAKLCNIFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFD 219 Query: 158 KRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD 217 + T + F PD F + + ++ +A G K N + + Sbjct: 220 GED-YTCITFQPDLAKFKMEKLDKDIVA-LMTRRAYDLAGSCKGVKVMFNGKKLPV---N 274 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 G Y+ V L E + W + S+VN I T +GG Sbjct: 275 GFRSYVDLYVKDK--LDETGVALKVIHELANERWDVCLTLSEKGFQQISFVNSIATTKGG 332 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 HV+ + ++ + E + +N GV + + + ++ +++P F QTKE + Sbjct: 333 RHVDYVVDQVVGKLIEVVKKKN--KAGVSVKPFQVKNHIWVFINCLIENPTFDSQTKENM 390 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 + + + + + F N E + AQ ++ V+ G Sbjct: 391 TLQPKSFGSKCQLSEKFFK-AASNCGIVESILNWVKFKAQTQLNKKCSSVKYSKIKGIPK 449 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDE 454 D + L L EGDSA A R+ + PL+GKILN E S + Sbjct: 450 LDDANDAGGKHSLECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREASHKQ 509 Query: 455 VLASQEVHDISVAIGIDPDS-----DDLSQLRYGKICILADADSDGLHIATLLCALFVKH 509 ++ + E+++I +G+ + L LRYGKI I+ D D DG HI LL + Sbjct: 510 IMENAEINNIIKIVGLQYKKSYDDAESLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHN 569 Query: 510 FRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEM 569 + +L+KHG + + P+ + K+ + E + + ++ +K ++ +KGLG Sbjct: 570 WPSLLKHGFLEEFITPIVKASKNKQELSFYSIPEFDEWKKHIENQKA-WKIKYYKGLGTS 628 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 + +E D R++ EDD + + +KK+ +DR+ WL Sbjct: 629 TAKEAKEYFADMERHRILFRYAGPEDDA----AITLAFSKKKIDDRKEWLTN 676 >UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota RepID=TOP2A_HUMAN Length = 1531 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 132/652 (20%), Positives = 244/652 (37%), Gaps = 52/652 (7%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT-------------------------RPNHLGQEVID 41 + T LE + RP Y + + E++ Sbjct: 31 ERIYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILV 90 Query: 42 NSVDEALAGH-AKRVDVILHADQS-LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK 99 N+ D + V + + + + + ++G+G+PV H E + LI +L Sbjct: 91 NAADNKQRDPKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSN 150 Query: 100 FSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCG 157 + + + +GG +G G + N S + V R +++ + + + Sbjct: 151 YDDDEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKPFN 210 Query: 158 KRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD 217 + T + F PD + F + +++ A G K +N + Sbjct: 211 GED-YTCITFQPDLSKFKMQSLDKDIVALMVRR-AYDIAGSTKDVKVFLNGNKLPV---K 265 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 G Y+ + L E + W + S+VN I T +GG Sbjct: 266 GFRSYVDMYLKDK--LDETGNSLKVIHEQVNHRWEVCLTMSEKGFQQISFVNSIATSKGG 323 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 HV+ + ++ + + + +N GV + A + + ++ +++P F QTKE + Sbjct: 324 RHVDYVADQIVTKLVDVVKKKN--KGGVAVKAHQVKNHMWIFVNALIENPTFDSQTKENM 381 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 + + + + + + FI E + AQ ++ V+ G Sbjct: 382 TLQPKSFGSTCQLSEKFIKAAI-GCGIVESILNWVKFKAQVQLNKKCSAVKHNRIKGIPK 440 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTWEVSSDE 454 D ++ L L EGDSA A R+ + PL+GKILN E S + Sbjct: 441 LDDANDAGGRNSTECTLILTEGDSAKTLAVSGLGVVGRDKYGVFPLRGKILNVREASHKQ 500 Query: 455 VLASQEVHDISVAIGID-----PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKH 509 ++ + E+++I +G+ D D L LRYGKI I+ D D DG HI LL + Sbjct: 501 IMENAEINNIIKIVGLQYKKNYEDEDSLKTLRYGKIMIMTDQDQDGSHIKGLLINFIHHN 560 Query: 510 FRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEM 569 + +L++H + + P+ ++ K+ + E E K K V+ +KGLG Sbjct: 561 WPSLLRHRFLEEFITPIVKVSKNKQEMAFYSLPEFEEWKSSTPNHK-KWKVKYYKGLGTS 619 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 + +E D R+ EDD + + +KK+ +DR+ WL Sbjct: 620 TSKEAKEYFADMKRHRIQFKYSGPEDDA----AISLAFSKKQIDDRKEWLTN 667 >UniRef50_C0W359 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W359_9ACTO Length = 746 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 233/738 (31%), Positives = 356/738 (48%), Gaps = 114/738 (15%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + +Y+A + VL GLE VR+RPGMY +T H E+IDNSVDEAL G+ + V Sbjct: 5 SSSYSARHLSVLEGLEAVRKRPGMYIGSTDQRGLMHCVWEIIDNSVDEALEGYGDSIAVT 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 +H D S+EV D+GRG+PVD+ P G+ VEL+ +LHAGGKF +Y +GGLHGVG SV Sbjct: 65 VHEDGSIEVRDNGRGVPVDVEPGSGLTGVELVYTKLHAGGKFGGGSYGAAGGLHGVGASV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK----------------------VQDLQVVGTC 156 VNALS+R++V V R G+ Y ++F G +L+V+G Sbjct: 125 VNALSERMDVAVDRGGKTYAMSFHRGVPGVFDDPDPAHPRPDTPFTEYTEASELRVIGKV 184 Query: 157 GKRNTGTSVHFWPDETFFDSP-RFSVSRLTHVLKAKAVLCPGVEITFKDEINNT------ 209 + +GT V +W D F P + + L L+ + L PG+ +T DE + Sbjct: 185 KRGVSGTRVRYWADPQIFPRPSEYDAAALRARLRQTSFLVPGLSLTLTDERSAEEAARAE 244 Query: 210 ----------------------------------------EQRWCYQDGLNDYLAEAVNG 229 + + + G D++ Sbjct: 245 KAAPSGSGAAGDDPALRASAKNATEEASDLFASQTQAPEGSEVFLAKGGTRDFVDFLATD 304 Query: 230 LPTLPEKPFIGNFAGD--------------------TEAVDWALLWLPEGGELLTESYVN 269 G T +VD AL W G + + S+VN Sbjct: 305 ASVTDTFRLTGEGTYTETVQQLDKKSGHLRPVEVERTCSVDVALRWGI-GYDTIERSFVN 363 Query: 270 LIPTMQGGTHVNGLRQGLLDAMREFCEYR----NILPRGVKLSAEDIWDRCAYVLSVKMQ 325 +I T GGTH+ G Q + +R+ + + R K+ +DI V++V++ Sbjct: 364 IIATPMGGTHLTGFEQAVTKVLRKQIDSNARALKVTARDGKIEKDDILAGMTAVVTVRVP 423 Query: 326 DPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQA----AELLAEMAISSAQRRMR 381 +PQF GQTKE L + V+ VV+ L + + + L E + + R+ Sbjct: 424 EPQFEGQTKEVLGTAPVRQIVAKVVEKELTALLTSSKRDLKTQSRALQEKVVGEMRARIS 483 Query: 382 ---AAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIM 438 + RK LP KLADC + D+ +ELF+VEGDSA G+AK AR+ E+QA++ Sbjct: 484 ARMHKEITRRKTALETSTLPAKLADCRSDDVAASELFIVEGDSALGTAKNARNSEFQALL 543 Query: 439 PLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLH 497 P++GKILN + S ++L + E I +G + DL RYGK+ ++ DAD DG H Sbjct: 544 PIRGKILNVQKASQADMLRNAECSAIIQVVGAGSGRTFDLDSARYGKVILMTDADVDGAH 603 Query: 498 IATLLCALFVKHFRALVKHGHVYVALPPLYRI------DLGKEVYYALTEEEKEGVLEQL 551 I TLL LF ++ R +++ G VY A+PPL+RI KEV Y +++E L +L Sbjct: 604 IRTLLLTLFFRYMRPMIEAGRVYAAVPPLHRIEVSAQGRRKKEVIYTYSDDELVRTLRKL 663 Query: 552 KRKKGKP-NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI-DDEDDQRTDAMMDMLLAK 609 +++ QR+KGLGEM+ QL ETT++P R L ++T+ D+ + + + ++L+ Sbjct: 664 EKQGRSFKEPQRYKGLGEMDAHQLAETTMEPEHRTLRRITLGDEAELLEAENVFELLMGS 723 Query: 610 KRSEDRRNWLQEKGDMAE 627 E RR+++ E + Sbjct: 724 -SVEPRRDFIVEGAQDID 740 >UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_9CHLO Length = 1459 Score = 583 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 151/663 (22%), Positives = 255/663 (38%), Gaps = 57/663 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 D + T LE + RP Y + + E++ Sbjct: 55 EDIYQKKTQLEHILLRPDTYVGSCEKTEEKAWVYCKDTNKLVQRQMSFVPGLYKIFDEIL 114 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + + V + + + V +DG G+PV++H EEGV ELI L Sbjct: 115 VNATDNKVRDPSMVTLRVDIDQEAGCIRVYNDGNGIPVEMHKEEGVYVPELIFGHLLTSS 174 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFENGEKVQDLQVVGTC 156 +++ + +GG +G G + N S V + Y F+N + VV C Sbjct: 175 NYNDNEKKVTGGRNGYGAKLANIFSTEFVVETCDGSRERRYRQVFKNNMGEKCEPVVTKC 234 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 + T + F PD F+ + + K + K +N + Sbjct: 235 KPTDNWTCITFKPDLAKFNMTELEDDTVALMCKRVYDAAGNIGKNTKVFLNGERLKV--- 291 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWL-PEGGELLTESYVNLIPTMQ 275 G +DY+ + G P+ + W + + G S+VN I TM+ Sbjct: 292 KGFSDYVDLYLEGRENAPK-------VYEKVNDRWEVCVTISDSGNFQQVSFVNGICTMK 344 Query: 276 GGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 GGTHVN + + + E + + + L A + + ++ +++P F QTKE Sbjct: 345 GGTHVNQVADEVAGKLLEKIKKKEKSCK--NLKAAHVKNHLWVFVNALIENPAFDSQTKE 402 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGP 395 L++R D I + N E + A + M+ + +LT P Sbjct: 403 TLNTRASNFGSKYEASDKVIKQMM-NSGIVEQILSWASFKQSKEMKKSDGKKATRLTGIP 461 Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSS 452 L D ++ L L EGDSA A R+ + PL+GK+LN + S Sbjct: 462 KL-DDANDAGGRNSEHCTLILTEGDSAKALAVSGLSVVGRDRYGVFPLRGKLLNVRDASH 520 Query: 453 DEVLASQEVHDISVAIGIDPD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHF 510 D+++ + E++ I +G+ + LRYG I I+ D D DG HI LL HF Sbjct: 521 DQIMNNAEINHIKQILGLRHGTTYESAKSLRYGHIMIMTDQDHDGSHIKGLLINFLHAHF 580 Query: 511 RALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLE--QLKRKKGKPNVQRFKGLG 567 +L+K G + + P+ + GK+ T E + E + N++ +KGLG Sbjct: 581 PSLLKIPGFLVEFITPIIKATKGKQSKVFYTLPEYDNWKEHAEETGTGRGWNIKYYKGLG 640 Query: 568 EMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 + +E + + D D ++DM +KKR EDR+ WL Sbjct: 641 TSTAKEAKEYFAALDHHKKTFAWTTDGDG----NLIDMAFSKKRVEDRKAWLNAYEPGTY 696 Query: 628 IEV 630 +++ Sbjct: 697 LDM 699 >UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces pombe RepID=TOP2_SCHPO Length = 1485 Score = 583 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 139/658 (21%), Positives = 268/658 (40%), Gaps = 52/658 (7%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVID 41 + LT E V RRP Y + + E+I Sbjct: 76 TQYQRLTPREHVLRRPDTYIGSIEPTTSEMWVFDSEKNKLDYKAVTYVPGLYKIFDEIIV 135 Query: 42 NSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK 99 N+ D + + V L + + + ++G+G+P++IH +E + ELI L Sbjct: 136 NAADNKVRDPNMNTLKVTLDPEANVISIYNNGKGIPIEIHDKEKIYIPELIFGNLLTSSN 195 Query: 100 FSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCG 157 + + + +GG +G G + N S V + + Y + + + V+ + Sbjct: 196 YDDNQKKVTGGRNGYGAKLCNIFSTEFVVETADKERMKKYKQTWYDNMSRKSEPVITSLK 255 Query: 158 KRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD 217 K + T + F PD F + + ++K + G K +NN Sbjct: 256 KPDEYTKITFKPDLAKFGMDKID-DDMVSIIKRRIYDMAGTVRETKVYLNNERISIS--- 311 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 G Y+ + E+P + W + + G+ S+VN I T++GG Sbjct: 312 GFKKYVEMYLASDTKPDEEPP--RVIYEHVNDRWDVAFAVSDGQFKQVSFVNNISTIRGG 369 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 THVN + ++DA+ E + N + + A I + ++ ++++P F QTKE L Sbjct: 370 THVNYVANKIVDAIDEVVKKEN---KKAPVKAFQIKNYVQVFVNCQIENPSFDSQTKETL 426 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 +++ A + D F+ + ++ E + + A + A +++ +R ++T L Sbjct: 427 TTKVSAFGSQCTLSDKFLKAIKKSS-VVEEVLKFATAKADQQLSKGDGGLRSRITGLTKL 485 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDE 454 ++ ++ L L EGDSA A R+Y + PL+GK+LN E S + Sbjct: 486 ED-ANKAGTKESHKCVLILTEGDSAKSLAVSGLSVVGRDYYGVFPLRGKLLNVREASHSQ 544 Query: 455 VLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRA 512 +L ++E+ I +G D+ LRYG + I+ D D DG HI L+ + + Sbjct: 545 ILNNKEIQAIKKIMGFTHKKTYTDVKGLRYGHLMIMTDQDHDGSHIKGLIINYLESSYPS 604 Query: 513 LVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNP 571 L++ G + + P+ + G +V T E E ++ ++ +KGLG + Sbjct: 605 LLQIPGFLIQFITPIIKCTRGNQVQAFYTLPEYEYW-KEANNNGRGWKIKYYKGLGTSDH 663 Query: 572 MQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++ D + + ++D +++M AKK+++ R+ WL+ ++ Sbjct: 664 DDMKSYFSDLDRHMKYFHAMQEKDA----ELIEMAFAKKKADVRKEWLRTYRPGIYMD 717 >UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=Q5KSK9_COPCI Length = 1572 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 137/664 (20%), Positives = 253/664 (38%), Gaps = 51/664 (7%) Query: 6 NADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEV 39 ++ + LT LE + +RP Y + + E+ Sbjct: 99 TSEMYQKLTQLEHILKRPDSYIGSIETITTPMWTYDSETKRMVHREVKYVPGFFKIVDEI 158 Query: 40 IDNSVDEALAGH-AKRVDVILH-ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 + N+ D + + V + + ++ V ++GRG+P++IH +E + E+I L Sbjct: 159 LVNAADNKINDPSMDTLKVTIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTS 218 Query: 98 GKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGT 155 + + + +GG +G G + N S V Q Y + + + Sbjct: 219 TNYDDDEKKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITK 278 Query: 156 CGKRNTGTSVHFWPDETFFDSPRFSVSR---LTHVLKAKAVLCPGVEITFKDEINNTEQR 212 + T + F PD F L + A V++ DE + Sbjct: 279 NTRGEEYTRITFRPDLKRFGMNSIDEDTVSLLKRRVFDMAGTVKDVKVFLNDERLKIKNF 338 Query: 213 WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWL-PEGGELLTESYVNLI 271 Y + + EA +P + + W + + G S+ N I Sbjct: 339 KQYVEMYVSSVQEAAAEKSGGAAQPK-QTVIHEQISDRWEIAYTLSTEGTFQHVSFANSI 397 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T +GGTHVN + + A+ +N +G + I + + + +P F Sbjct: 398 ATSKGGTHVNYIADQISKALVTSISKKN---KGATVKPAQIRNHMWLFVKSLIVNPTFDS 454 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL 391 QTKE L+ + D FI + + + + A A ++M+ A R +L Sbjct: 455 QTKELLTLPSSKFGSKPTISDEFIKKVAK-SGIVDNVLNWAKFKADQQMKRADGTKRSRL 513 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTW 448 L + + L L EGDSA A R+ + PL+GK+LN Sbjct: 514 LGLAKLSD-ANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVR 572 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALF 506 E D+++ ++E+ +I +G+ + D + S LRYG++ I+ D D DG HI L+ Sbjct: 573 EARHDQIMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRLMIMTDQDHDGSHIKGLIINFL 632 Query: 507 VKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKG 565 + +L+K + + P+ R+ G +V T E E LE+ + K + +KG Sbjct: 633 DHFYPSLLKIPDFLVEFVTPIVRVKKGNKVKDFFTIPEYEQWLEETPDAR-KWESKYYKG 691 Query: 566 LGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 LG RE + + D ++D+ +KK++++R+ WL++ Sbjct: 692 LGTSEDKDAREYFSKMEKHMIPFAPTQEGDR----ELIDLAFSKKKADERKEWLRQFKPG 747 Query: 626 AEIE 629 ++ Sbjct: 748 TFLD 751 >UniRef50_D1C5K6 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5K6_SPHTD Length = 674 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 214/651 (32%), Positives = 324/651 (49%), Gaps = 33/651 (5%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+ I VL G+E +R RPGMY +T +HL E +DN+ DEA+AG+ K + V + Sbjct: 33 GYSGADIRVLEGIEAIRTRPGMYIGSTGTTGLHHLIWEALDNATDEAIAGYGKNIWVEID 92 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVE--LILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 D + V D+ RG+P D G +I+ H+GGKF Y+ +GGLHGVG +V Sbjct: 93 RDGWVTVRDEARGIPFDPKEINGKTLPTATVIMTVPHSGGKFEQGAYKTAGGLHGVGATV 152 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF--DS 176 +NALS+R+E+ + RDGQ + F G + C + TGT + + D F + Sbjct: 153 INALSERLELTIWRDGQQFFQTFTRGVP--GKHTITPCDPKRTGTQLRWLFDREIFADPA 210 Query: 177 PRFSVSRLTHVLKAKAVLCPG----VEITFKDEINNTEQRWCYQDGLNDYLAEA---VNG 229 + + L+A A L G + I D EQ + + GL DY+ E Sbjct: 211 VGYQRDVVESRLRAAAYLNRGIAYHLRIWDDDAGEMVEQTFHSERGLVDYVEELRPRDKE 270 Query: 230 LPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 L ++ D ++ A+ S+ N + T++GGTH +G + L Sbjct: 271 SQPLFKEVVAIAETRDDVVIEVAVQPNRGE-RTRVVSFANGVRTIEGGTHESGFQAALTK 329 Query: 290 AMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 + + + + + A+ I + ++SVK+ +PQF GQTK RL++ V V Sbjct: 330 VLNDQAIRLGVTKKR-EFDADLIREGLVAIVSVKLTNPQFEGQTKNRLTNSGVDGIVRSV 388 Query: 350 VKDAFILWLNQNVQAAELLAE--------MAISSAQRRMRAAKKVVRKKLTSGPALPGKL 401 V DA W+ N AA + A R+ K R A+ K Sbjct: 389 VGDALTRWMEANESAAREWVRTLEQRRKARDAAKAAARLVMTGKSRRNGALLDAAISDKF 448 Query: 402 ADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV 461 C +D R EL+LVEGDSAGGSA Q R ++QAI+ L GK LN + + V ++E+ Sbjct: 449 IPCNTKDPERAELYLVEGDSAGGSASQGRFSDFQAILKLSGKPLNVARANIERVAKNEEI 508 Query: 462 HDISVAIGIDPDS-DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 + IG D+S+LR+ KI I+ DAD DG+HI LL LF++ L++ GH+Y Sbjct: 509 RTLLQVIGTGSRQAFDISRLRFHKIIIMTDADVDGMHIQALLLTLFLQELPQLIERGHIY 568 Query: 521 VALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLD 580 +A PPLY + +V + +E +K +KG ++R+KGLGEMNP +LRETT+D Sbjct: 569 LAAPPLYSVRQNGKVTWLRDDEALREW---MKGRKGPFELKRYKGLGEMNPRELRETTMD 625 Query: 581 PNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 P RRL ++T+ ED + M+ L+ +E RR +L ++ EI+V Sbjct: 626 PERRRLRRVTL--EDAALAERMVYELMEDTNAEGRRTFLAQRARKYQEIDV 674 >UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID=B3H4G2_ARATH Length = 1438 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 135/660 (20%), Positives = 259/660 (39%), Gaps = 52/660 (7%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT------------------------RPNHLGQEVIDN 42 + + + LE + RP Y + + E++ N Sbjct: 32 EEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYEKDEMVQRPVTYVPGLYKIFDEILVN 91 Query: 43 SVDEALAG-HAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 + D V V++ + + V + G G+PV+IH EEG+ E+I L + Sbjct: 92 AADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVPEMIFGHLLTSSNY 151 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGK 158 + + +GG +G G + N S + + Y FEN + V+ C K Sbjct: 152 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVITKCNK 211 Query: 159 RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR-WCYQD 217 T V F PD F+ + + K + + + K E+N + + D Sbjct: 212 SENWTKVTFKPDLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVKSFTD 271 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 ++ YL+ A P + W + G+ S+VN I T++GG Sbjct: 272 YVDLYLSAANKSRTEDPLPRLT-----EKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGG 326 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 THV+ + + N + + A ++ + ++ + +P F QTKE L Sbjct: 327 THVDYVTSQIT---NHIVAAVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETL 383 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 + RQ + + + F+ + + E L A + ++ + ++ Sbjct: 384 TLRQSSFGSKCELSEDFLKKVGK-SGVVENLLSWADFKQNKDLKKSDGAKTGRVL--VEK 440 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDE 454 A+ ++ L L EGDSA A R Y + PL+GK+LN E S+ + Sbjct: 441 LDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLLNVREASTTQ 500 Query: 455 VLASQEVHDISVAIGIDPD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRA 512 + ++E+ ++ +G+ + ++++ LRYG++ I+ D D DG HI LL + + Sbjct: 501 ITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLINFIHSFWPS 560 Query: 513 LVK-HGHVYVALPPLYRIDLG--KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEM 569 L++ + + P+ + K+V + E E E LK +++ +KGLG Sbjct: 561 LLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKESLKGNATGWDIKYYKGLGTS 620 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + +E + + + D++D +++ +KK+ E R+NWL ++ Sbjct: 621 TAEEGKEYFSNLGLHKKDFVWEDEQDG----EAIELAFSKKKIEARKNWLSSYVPGNHLD 676 >UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2_ARATH Length = 1473 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 135/660 (20%), Positives = 259/660 (39%), Gaps = 52/660 (7%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT------------------------RPNHLGQEVIDN 42 + + + LE + RP Y + + E++ N Sbjct: 32 EEMYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYEKDEMVQRPVTYVPGLYKIFDEILVN 91 Query: 43 SVDEALAG-HAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 + D V V++ + + V + G G+PV+IH EEG+ E+I L + Sbjct: 92 AADNKQRDAKMDSVQVVIDVEQNLISVCNSGAGVPVEIHQEEGIYVPEMIFGHLLTSSNY 151 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGK 158 + + +GG +G G + N S + + Y FEN + V+ C K Sbjct: 152 DDNVKKTTGGRNGYGAKLTNIFSTEFIIETADGKRLKKYKQVFENNMGKKSEPVITKCNK 211 Query: 159 RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR-WCYQD 217 T V F PD F+ + + K + + + K E+N + + D Sbjct: 212 SENWTKVTFKPDLKKFNMTELEDDVVALMSKRVFDIAGCLGKSVKVELNGKQIPVKSFTD 271 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 ++ YL+ A P + W + G+ S+VN I T++GG Sbjct: 272 YVDLYLSAANKSRTEDPLPRLT-----EKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGG 326 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 THV+ + + N + + A ++ + ++ + +P F QTKE L Sbjct: 327 THVDYVTSQIT---NHIVAAVNKKNKNANVKAHNVKNHLWVFVNALIDNPAFDSQTKETL 383 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 + RQ + + + F+ + + E L A + ++ + ++ Sbjct: 384 TLRQSSFGSKCELSEDFLKKVGK-SGVVENLLSWADFKQNKDLKKSDGAKTGRVL--VEK 440 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDE 454 A+ ++ L L EGDSA A R Y + PL+GK+LN E S+ + Sbjct: 441 LDDAAEAGGKNSRLCTLILTEGDSAKSLALAGRSVLGNNYCGVFPLRGKLLNVREASTTQ 500 Query: 455 VLASQEVHDISVAIGIDPD--SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRA 512 + ++E+ ++ +G+ + ++++ LRYG++ I+ D D DG HI LL + + Sbjct: 501 ITNNKEIENLKKILGLKQNMKYENVNSLRYGQMMIMTDQDHDGSHIKGLLINFIHSFWPS 560 Query: 513 LVK-HGHVYVALPPLYRIDLG--KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEM 569 L++ + + P+ + K+V + E E E LK +++ +KGLG Sbjct: 561 LLQVPSFLVEFITPIVKATRKGTKKVLSFYSMPEYEEWKESLKGNATGWDIKYYKGLGTS 620 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + +E + + + D++D +++ +KK+ E R+NWL ++ Sbjct: 621 TAEEGKEYFSNLGLHKKDFVWEDEQDG----EAIELAFSKKKIEARKNWLSSYVPGNHLD 676 >UniRef50_UPI0000DB6EE1 PREDICTED: similar to DNA topoisomerase 2-alpha (DNA topoisomerase II, alpha isozyme) n=1 Tax=Apis mellifera RepID=UPI0000DB6EE1 Length = 1407 Score = 573 bits (1477), Expect = e-162, Method: Composition-based stats. Identities = 130/656 (19%), Positives = 245/656 (37%), Gaps = 53/656 (8%) Query: 10 IEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVIDNS 43 + + LE + RP Y + + E++ N+ Sbjct: 23 YQKKSQLEHILLRPDTYIGSVEPVTEIMWVYDKEKESMTQKEIKYVPGLYKIFDEILVNA 82 Query: 44 VDEALAGH-AKRVDVILHADQSL-EVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS 101 D + + ++A+ ++ V ++G+G+PV IH EE + +I L + Sbjct: 83 ADNKQRDPKMDTIKIEINAENNIISVWNNGKGIPVVIHKEENMYVPTMIFGHLLTSSNYD 142 Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCGKR 159 ++ + +GG +G G + N S R V + + + N + Sbjct: 143 DEEEKVTGGRNGYGAKLCNIFSHRFTVETASKEYKKCLKQTWSNNMGSASEPRIKDFSGE 202 Query: 160 NTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGL 219 + T V F PD + F + ++ +A K +N T+ Sbjct: 203 D-FTKVIFSPDLSKFKMQSLDDDIIA-LMSRRAYDIAASTRGVKVFLNGTKIPV---KNF 257 Query: 220 NDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTH 279 DY+ + G P + W + S+VN I T +GG H Sbjct: 258 KDYVDFYIKGREDDVGNPL--KIVYENCGPRWEVAIALSDKGFQQMSFVNSIATTKGGRH 315 Query: 280 VNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS 339 V+ + + ++ + E + +N GV + I + ++ + +P F QTKE ++ Sbjct: 316 VDHVTELIVKQLTETLKKKN--KAGVTIKPFQIKNHLWIFINCLINNPTFDSQTKENMTL 373 Query: 340 RQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPG 399 + + + + FI + + E + A A +++ +++ G Sbjct: 374 QPKSFGSKCTLSEKFITSVTKIG-IVEAVLTWAKFKADSQLQKLGPKSKQRKLQGIPKLE 432 Query: 400 KLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVL 456 D L L EGDSA A R+ I PL+GKILN E + ++L Sbjct: 433 DANDAGTNKSLECTLILTEGDSAKTMAVSGLAAIGRDKYGIFPLRGKILNVREATHKQIL 492 Query: 457 ASQEVHDISVAIGIDPDS-----DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 + E++++ +G+ +DL LRYGK+ I+ D D DG HI LL ++ Sbjct: 493 ENAEINNLIKILGLQYKKKYETREDLKTLRYGKMMIMTDQDQDGSHIKGLLINFIHHNWP 552 Query: 512 ALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNP 571 +L+K V + P+ + G +V + E + + ++ +KGLG Sbjct: 553 SLLKLNFVEEFITPIVKATKGNQVLSFFSMPEFNKWKSETENFH-TYKIKYYKGLGTSTA 611 Query: 572 MQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 + +E + R+ D + D + M +KK + R++WL D + Sbjct: 612 KEAKEYFENMTRHRIRF----RYDGDQDDQNIIMAFSKKCVDQRKDWLMNHMDETK 663 >UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS63_ENCCU Length = 1144 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 135/659 (20%), Positives = 250/659 (37%), Gaps = 62/659 (9%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + + T +E + RP Y + + E+I Sbjct: 5 EETYQKKTPVEHILLRPDTYIGSVEKEAQEMYVWDEENGRMVYKSIEYVPGLYKIFDEII 64 Query: 41 DNSVDEALAGH-AKRVDVILHADQ-SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + + V + + + V ++G+G+PV IH EE V ELI L Sbjct: 65 VNAADNKIRDPKMDVIKVSIDPEGNEISVYNNGKGIPVRIHKEENVYVPELIFGNLLTSS 124 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTC 156 +++ + +GG +G G + N SK V + Y + + V++ + Sbjct: 125 NYNDDEKKVTGGRNGYGAKLCNIFSKEFVVETADCEVKKYYRQRYRDNMGVKEDPEISRY 184 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 + T + F PD F R + +L+ + G+ K +N Sbjct: 185 -TKGDFTKITFKPDLRRFKMTRLDDDIVA-LLRKRVYDLAGIVKDVKIFLNEKRIEV--- 239 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 G +Y+ + P + W L + S+VN I T +G Sbjct: 240 KGFKEYVKLYI---------PPGASVVHQVINDRWELALTTSEEQFQQVSFVNGICTTKG 290 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 GTHVN + + ++D + E + + +G+ + + ++ + +P F QTKE Sbjct: 291 GTHVNHVVERIVDPLVEAIQKKE---KGLSVRPFQVRSCMFVFINSLIDNPAFDSQTKEN 347 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA 396 L+ R A F+ + +N + + A + ++++ +L+ P Sbjct: 348 LTLRASAFGSKCEPMGDFVKSIIKNTPIVQKITSFAKAKQSQQLKKTDGAKTSRLSGIPK 407 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSD 453 L L L EGDSA A R+ + PL+GK+LN E S Sbjct: 408 LED-ANFAGTSRSKDCTLILTEGDSAKTLAVAGLSVVGRDAYGVFPLRGKLLNVREASHK 466 Query: 454 EVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 +++ + E+ I +G+ + +D+S LRYG + I+ D D DG HI L+ + Sbjct: 467 QIMENAEISSIKKILGLQHNKVYEDVSSLRYGHVMIMTDQDHDGSHIKGLIINFLDHFYP 526 Query: 512 ALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMN 570 +L+K G + + P+ R +V T E E K+ + N++ +KGLG Sbjct: 527 SLLKIPGFLQEFITPIIRATKKGQVRDFFTLPEYEEF----KKNEDGWNIKYYKGLGTST 582 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++ + + ED ++D+ KK+++ R+ WL ++ Sbjct: 583 SADAKQYFSNLPVHVKSFTPLAAED----KELIDLAFNKKKADARKTWLLNFAPGTFLD 637 >UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PTE9_MALGO Length = 1376 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 137/659 (20%), Positives = 249/659 (37%), Gaps = 73/659 (11%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 +D + L+ LE V RRP Y + + E++ Sbjct: 24 SDTYQKLSQLEHVLRRPDTYIGSVERRTETMWVYDVAKEQMAYRDTSYVPGFYKIFDEIL 83 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + + V + D ++ V ++G+G+PV+IH +E V ELI L Sbjct: 84 VNAADNKVRDPSMDTMKVTIDKDAGTISVWNNGQGIPVEIHEKEQVYIPELIFGNLLTSS 143 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQ--VYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S V + Y F N +D + Sbjct: 144 NYDDDEAKVTGGRNGFGAKLTNIYSTEFIVETADKQRELKYKQVFSNHMHDKDKPKITKN 203 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 ++ T + F PD + F ++K G + Sbjct: 204 TRKEEYTCITFKPDLSLFHMDSIHPDTEALLMKRV-FDMAGTRV---------------- 246 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 +P I A + W + + G S+VN I T++G Sbjct: 247 ---------IRPHGGNPVPRPTIVYDASEDHGRLWEVGFAVSDGTARQVSFVNNIATIKG 297 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 G HV+ + +++ + E + + + A I + ++ ++ +P F QTKE Sbjct: 298 GKHVDHVESQIVERIMEHLKK---GKKDAPIKANHIRQQLWIFVNCQIVNPTFDSQTKET 354 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPA 396 L+ + A V+ D F + + + + + R+++A R ++ Sbjct: 355 LTLKPSAFGSKWVMPDDFAKKVLK-SGVIDNVQSIVQYHQDRQLQATDGRKRSRV--SVT 411 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSD 453 + L L EGDSA G A R+ + PL+GK+LN E + D Sbjct: 412 KLEDANWAGTKRSAECTLILTEGDSAKGLAVSGLSEVGRDAYGVFPLRGKLLNVREATYD 471 Query: 454 EVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 ++ + E+ +I +G+ + LRYG + I+ D D DG HI L+ + Sbjct: 472 QIKKNTEIKNIKEILGLQHGKSYSTVDGLRYGSLMIMTDQDFDGSHIKGLIINYLDHFYP 531 Query: 512 ALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMN 570 +L+K + + P+ + G+EV T E E + +KGLG Sbjct: 532 SLLKIPNFLVEFITPIIKATKGQEVRSFFTIPEFEQWKA-TGDGGRGWTTKYYKGLGTSK 590 Query: 571 PMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 P +++E D + L TI ED ++D+ KK+++DR+ WL++ ++ Sbjct: 591 PYEMKEYFRDMDRHMLSFDTIRPEDH----DLLDLAFNKKKADDRKEWLRQFVPGTYLD 645 >UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae RepID=A5E7X7_LODEL Length = 1492 Score = 570 bits (1468), Expect = e-161, Method: Composition-based stats. Identities = 138/672 (20%), Positives = 266/672 (39%), Gaps = 57/672 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 ++ + L+ LE + +RP Y + + E++ Sbjct: 80 SETYQKLSQLEHILKRPDTYIGSVEKTRTEMWCFDVESESMKFQEVTIVPGLYKIFDEIL 139 Query: 41 DNSVDEALAGH-AKRVDVILHADQSLE-VIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + K + V + + ++ V++DG+G+PV+IH +E + ELI L Sbjct: 140 VNAADNKIRDPSMKNIKVKIDPENNVIQVMNDGKGIPVEIHTKEKMYIPELIFGNLLTSS 199 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S + EV G++Y + + + T Sbjct: 200 NYDDDQKKVTGGRNGFGAKLCNIFSTQFEVETADLNTGKLYKQVWTDNMTKVGKPKITTL 259 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRW-CY 215 + T + F PD F L VL+ + G +N+ + Sbjct: 260 KTKKEYTKITFMPDLQKFGMDSLDED-LLSVLRRRVYDLCGTVRNCNIYLNDKRLSVNSF 318 Query: 216 QDGLNDYLAEAVNGLPTLP----EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLI 271 + + Y+ P KP + W + + G S+VN I Sbjct: 319 KAYVEMYVKAIRERSPEPEGDAESKPATTTIVHEVFNDRWEVAFAVSDGNFNQVSFVNSI 378 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T GGTHV + ++ + E R + + + +++ D ++ +++P F Sbjct: 379 ATTAGGTHVKYVSDQIITKLVETLSKREKGKKKLMIKPQEVRDNMFIFINSLIENPAFTS 438 Query: 332 QTKERLSSRQCAAFVSG--VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRK 389 QTKE+L+++ + + I + + A+ + +A ++ + ++ A + Sbjct: 439 QTKEQLTTKPSQFGGKEKFIATENLINRILK-TGIADKIRAIANANEDKALQKADGSKKL 497 Query: 390 KLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILN 446 ++ + L +D + L L EG SA A R+Y PL+GK+LN Sbjct: 498 RIKNQVNLVD-ANKAGTKDGLKCTLILTEGLSALNLAVAGLTVVGRDYYGCFPLRGKLLN 556 Query: 447 TWEVSSDEVLASQEVHDISVAIGIDPDS----DDLSQLRYGKICILADADSDGLHIATLL 502 E S+D+V + E++ + IG+ +++ LRYG I I+ D D DG HI L+ Sbjct: 557 VREASADQVSKNIEINALKQIIGLQHKKVYTQENIKSLRYGHIMIMTDQDQDGSHIKGLI 616 Query: 503 CALFVKHFRALVK-HGHVYVALPPLYRIDLG----KEVYYALTEEEKEGVLEQLKRKKGK 557 F L+ G + + P+ ++ + K+V + E E E + + Sbjct: 617 INFLETSFPGLLDIPGFLLQFITPIVKVTVNGRGAKKVIPFYSMPEFEAWREGEGQNC-R 675 Query: 558 PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRN 617 + +KGLG P++ RE + + ED +D+ +KK+++DR+ Sbjct: 676 WTQKYYKGLGTSTPLEAREYFTALDRHLKRFHALQGEDAS----CIDLAFSKKKADDRKE 731 Query: 618 WLQEKGDMAEIE 629 WLQ ++ Sbjct: 732 WLQNFVPGDNLD 743 >UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP10_ENTDI Length = 1351 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 137/664 (20%), Positives = 262/664 (39%), Gaps = 65/664 (9%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT-------------------------------RPNHL 35 D L+ E + RP Y + + Sbjct: 9 EDIYVKLSHKEQILTRPDTYIGSIERNDEQVWLYEEPTEQYEEGRMVQKVISLAPGLFKI 68 Query: 36 GQEVIDNSVDEALAGH-AKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRL 94 E++ N+ D + V + S+ V ++G+G+P++IH +E + ELI L Sbjct: 69 YDEILVNASDNFQRDPKMTTIKVTIEG-NSITVYNNGKGIPIEIHKKENIYIPELIFGHL 127 Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG 154 + + + + +GG +G G + N S + + ++Y ++N ++ + Sbjct: 128 LTSSNYKDDDKKVTGGRNGYGAKLANIFSTKFSIETCDGKKIYKQTWKNNMSDKEEPEIE 187 Query: 155 TCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWC 214 + K T V F PD F +L +A G + IN + + Sbjct: 188 SVKKVEEYTKVTFTPDYKRFQMKGME-DDARRLLIRRAYDIAGCNPGKRIWINGKKVCFK 246 Query: 215 -YQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPT 273 + + Y+ ++P + AG+ W + GE + S+VN I T Sbjct: 247 NFAEYARMYV----------GDEPIVSEKAGE----RWDICVCASKGEPMQISFVNSINT 292 Query: 274 MQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQT 333 GGTHV+ + + + E + + +G ++ I + ++ +++P F QT Sbjct: 293 SHGGTHVDYVTGLMTKYLAEKMKK--LNKKGAEIKPFQIKNHLFVFVNSLIENPAFDSQT 350 Query: 334 KERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTS 393 KE L ++ + D F L + + + AI + + + ++T Sbjct: 351 KETLKTQVNKFGSKPTLSDKFFKELGKLSVVDD-ILAWAIKKGEMDLNKSGGKKTARITG 409 Query: 394 GPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEV 450 P L ++ N L L EGDSA A R+Y + PL+GK LN E+ Sbjct: 410 IPKL-DDANKAGTKEGNLCTLILTEGDSAKTLAVSGLSVVGRDYYGVFPLRGKPLNAREI 468 Query: 451 SSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVK 508 + +V +QE +I+ +G+ +++LRYG + I+AD D DG HI LL F Sbjct: 469 APSKVKENQEFENIAKIMGLRYGKVYSSINELRYGSVMIMADQDFDGSHIKGLLINYFHT 528 Query: 509 HFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKK--GKPNVQRFKG 565 + +L+K + + P+ ++ GK+ T + + ++ K ++ +KG Sbjct: 529 FWPSLLKIDNFLVEFITPIVKVKRGKQEISFFTLPQFNEWKDARIQEGQLKKWEIKYYKG 588 Query: 566 LGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 LG + D +T ++ D +D ++D+ +KR++DR+ WL+ Sbjct: 589 LGTSKDSDAKAYFSDLDTHKIKFAY----DGASSDEVIDLAFNRKRADDRKEWLKGYDPN 644 Query: 626 AEIE 629 ++ Sbjct: 645 TYLD 648 >UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KAQ6_9ALVE Length = 1579 Score = 558 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 145/676 (21%), Positives = 267/676 (39%), Gaps = 64/676 (9%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + +T +E + RP Y + + E++ Sbjct: 16 EQIYKKMTQIEHILARPDTYVGSLEHQTERMWVWESETGHIVQKQITFCPGLYKIFDEIL 75 Query: 41 DNSVDEALAG--HAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 97 N+ D H + V + A+ ++V ++G+G+P+ IH E V EL+ L Sbjct: 76 VNAADNLQRDPKHMNTIKVDIDAENGFIKVYNNGKGLPIQIHKEHHVYVPELVFGHLLTS 135 Query: 98 GKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGT 155 + +K + +GG +G G + N SK+ + R ++Y FE + + V+ Sbjct: 136 DNYDDKEKKVTGGRNGYGAKLSNIFSKKFLITTADRTRKKLYKQQFEKSMQKKKEPVITD 195 Query: 156 CGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGV--EITFKDEINNTEQRW 213 K + T V FWPD F + ++ + + G K +N Sbjct: 196 YDKED-FTCVQFWPDLEKFGMTHLDAD-IVSLMSKRVIDVAGTSASKKCKVYLNGKRVPI 253 Query: 214 -CYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLW---------LPEGGELL 263 ++D YL P + EK N V + W GG+ Sbjct: 254 SSFKDYAELYLTGEWVDAPKIYEKVARANVYVSCGHVQVSDRWEVLVTLSDPAGGGGQFQ 313 Query: 264 TESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVK 323 S+ N I T++GGTHVN + + +++A+ + + +N G++L + + ++ Sbjct: 314 QVSFANSINTVKGGTHVNHVAEQIVNAVLKKAQTKN--KGGMELKPFQVKNHMWLFVNAL 371 Query: 324 MQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA----QRR 379 +++P F QTKE L+ + V+ + + + + + + A Q + Sbjct: 372 IENPTFDSQTKETLTLKVAKFGSKCVLSEGTMKKVL-SSGIVDQVVNWAKFKQTATLQSK 430 Query: 380 MRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQA 436 ++ + ++ P L D + +R L L EGDSA A R+ Sbjct: 431 IKVGGTGGQTRIFGVPKLED-ANDAGGRYSDRCTLILTEGDSAKALAVAGLGVIGRDKYG 489 Query: 437 IMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSD 494 + PL+GK+LN E S + + ++E+ I IG++P D + LRYG I ++ D D D Sbjct: 490 VFPLRGKVLNVREASYKQTVDNKEIQAILKIIGLEPRKAYDGVKGLRYGSIMVMTDQDLD 549 Query: 495 GLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKR 553 G HI LL L + L++ G + + P+ + G+ T E E ++ Sbjct: 550 GSHIKGLLINLVHHWWPGLLQTRGFMKEFVTPIVKCVKGRRELSFFTLTEYEEW-KRNNN 608 Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 ++ +KGLG + ++ + L D +D +DM KKR++ Sbjct: 609 DGKGWKIKYYKGLGTSTSKEAQQYFSQISKHSLSFDYRDGDDG----EAIDMAFNKKRAD 664 Query: 614 DRRNWLQEKGDMAEIE 629 DR+ W+ D ++ Sbjct: 665 DRKEWINGYADGDCVD 680 >UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms RepID=TOP2_PENCH Length = 1587 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 130/672 (19%), Positives = 250/672 (37%), Gaps = 60/672 (8%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHL 35 T ++ + LT LE + +RP Y +T + Sbjct: 60 KDTNVSEKYQKLTQLEHIIKRPDTYVGSTERTTQHMWVYSSESEGMEYREVSYVPGLYKI 119 Query: 36 GQEVIDNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCR 93 E++ N+ D + V + + + V ++GRG+P+++H +E + ELI Sbjct: 120 FDEIVVNAADNKQNDKNMDEIRVTIDRESGEISVWNNGRGIPIEMHSKEKMYVPELIFGH 179 Query: 94 LHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQ 151 L + + + +GG +G G + N S + R + Y + Sbjct: 180 LLTSSNYDDTQMKVTGGRNGFGAKLCNVFSTEFTIETQDSRQKKKYKQTWTENMTKMGKA 239 Query: 152 VVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG---VEITFKDEINN 208 + + T V F PD F ++K + G V + Sbjct: 240 KITDAKGAD-YTKVTFKPDYAKFGMTGMD-DDFEALVKRRVYDLAGTAKVAVKLNGSRIP 297 Query: 209 TEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYV 268 Y + + + + I + W + + G S+V Sbjct: 298 IRNFKMYMEMYTKAIRRERGDMGPAGKNEIITC----SPDPRWEVGFAVSDGAFQQVSFV 353 Query: 269 NLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQ 328 N I GGTHVN + + + E + +N G L I + ++ + +P Sbjct: 354 NSIAITSGGTHVNYIADQICSKLAEQVKKKN--KNGATLKPAQIRNHIFIFVNALIVNPA 411 Query: 329 FAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVR 388 F QTKE+L+++Q V+++ F + + + + A A + ++ R Sbjct: 412 FTSQTKEQLTTKQSQFGSKCVLEEDFYKKILK-TEVMTNILHFAQQKADQMLKKTDGGRR 470 Query: 389 KKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKIL 445 ++ + ++ + L L EGDSA G A R + + PL+GK+L Sbjct: 471 SRMNN--PKLTDANKAGTKEGHHCTLILTEGDSAKGLAMAGRAVVGPDLFGVFPLRGKLL 528 Query: 446 NTWEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLC 503 N + S D++ +QE+ +I IG+ + D LRYG + I D D DG HI LL Sbjct: 529 NVRDASFDQIAKNQEIQNIKNFIGLQHKKEYTDTRGLRYGHLMITTDQDHDGSHIKGLLI 588 Query: 504 ALFVKHFRALVKHG-HVYVALPPLYRIDLGK-----EVYYALTEEEKEGVLEQLKRKKGK 557 F +L+K + + P+ ++ G + T E E E+ ++G Sbjct: 589 NFLQAQFPSLLKIPEFLIEFITPIVKVWKGDPKNPTKQRSFFTMPEYEAWKEEHGHERG- 647 Query: 558 PNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRN 617 + +KGLG + D + T+ D + ++++ +KK++++R+ Sbjct: 648 WEHKYYKGLGTSTTEDAQIYFRDLDRHLKEFHTMQDNEV----ELIELAFSKKKADERKG 703 Query: 618 WLQEKGDMAEIE 629 +++ ++ Sbjct: 704 NVRQFRPGTFLD 715 >UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalum RepID=Q7YZS4_PHYPO Length = 1498 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 134/683 (19%), Positives = 251/683 (36%), Gaps = 81/683 (11%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + + T +E + RP Y + + E++ Sbjct: 320 EEMYQKKTPVEHILLRPDSYIGSIQHTHQEQWVINESDGRMEYRECKYVPGLYKIFDEIL 379 Query: 41 DNSVDEALAGH-AKRVDVILHA-DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D H + V + + + ++++G+G+PV +H +E V EL+L L G Sbjct: 380 VNAADNKQRDHKMNVLQVTIDPANNIISILNNGKGIPVQLHEKEKVYVPELVLGTLLTGS 439 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTC 156 F +K + +GG +G G + N S EV ++Y ++ + + Sbjct: 440 NFDDKIAKVTGGRNGFGAKLTNIFSTSFEVETADAARHKLYRQSWSENMSQRTEPSIEHY 499 Query: 157 G--KRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWC 214 K + T + F PD F+ + ++K + + + +N Sbjct: 500 SGPKGSDYTRITFSPDLAKFNMQSLENGDILRLMKRRIYDMAACLPSVQVSLNGIPIPSG 559 Query: 215 YQDGLNDY---------------------------LAEAVNGLPTLPEKPFIGNFAGDTE 247 + ++ Y E + PF+ D Sbjct: 560 FDAYVSMYQPKDAQPLSNAEDGAQNEQEEHGEGAEGTEGEQPGKQPTKHPFVYAKINDR- 618 Query: 248 AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKL 307 A+ G+ S+VN I T +GGTHVN + + ++ A+ E + + Sbjct: 619 -WQVAVGLTMLEGQFSQVSFVNSIATSKGGTHVNHVAEQVVKAIHERITKKYP---DLDT 674 Query: 308 SAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAEL 367 I + ++ +++P F QTK+ L++R + + D+F+ + V + Sbjct: 675 RPAHIRNNLFVFVNCLIENPAFDSQTKDTLTTRPAHFGSACDLPDSFLKRIVAQVPIIDK 734 Query: 368 LAEMAISSAQRRMRAAKKV--VRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGS 425 + A + K + L + EGDSA Sbjct: 735 VVGWAKLKQMAEFEKSSTRKPKDKAGIKAIPKLDDANFAGGPRSSECTLIITEGDSAKSL 794 Query: 426 AKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-----DDL 477 A R+ + PL+GK+LN + S V+ ++E+ + + +G+ P +D Sbjct: 795 AVSGLSIVGRDKYGVFPLRGKLLNVRDQSPKRVMENEELKHLRMILGLTPGKEYRTAEDR 854 Query: 478 SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH-GHVYVALPPLYRIDLGKEVY 536 ++LRYGK+ ++ D D DG HI L ++ + +L++ G + + P+ + G EV Sbjct: 855 AELRYGKVMLMTDQDHDGSHIKGLFVNFMIQFWPSLLEQDGFLEQFITPIVKAFHGAEVQ 914 Query: 537 YALTEEEKEGVLEQLKRKK-GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDED 595 T E E QL + K ++ +KGLG + + RE D R+ + Sbjct: 915 TFYTTSEYEIWRSQLPDDQLSKWRIKYYKGLGTSSSQEAREYFKDLERHRIEF-----KW 969 Query: 596 DQRTDAMMDMLLAKKRSEDRRNW 618 D T MDM K + R+ W Sbjct: 970 DDTTTTKMDMAFGKDETAQRKTW 992 >UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEE2_VANPO Length = 1404 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 127/667 (19%), Positives = 263/667 (39%), Gaps = 56/667 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 ++ + ++ LE + +RP Y + + E++ Sbjct: 9 SERYQKISQLEHILKRPDTYIGSVEVQEQEQWIYNVENESLEEKQVKIVPGLFKIFDEIL 68 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + KR+DV ++ + +E+ +DG+G+P++IH +E + ELI L Sbjct: 69 VNAADNKVRDPSMKRIDVNINPEENLIEIKNDGKGIPIEIHDKEKIYIPELIFGHLLTSS 128 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S + G+ Y +E+ + + Sbjct: 129 NYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADPSTGKKYIQRWEDNMNTCHPPKITSY 188 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-QRWCY 215 + T V F PD F + + V++ + G ++ + + Sbjct: 189 KNSTSYTKVSFKPDLKRFKMEKLD-DDVVGVMRRRVYDINGSVRDINVYLDGKPLKIRNF 247 Query: 216 QDGLNDYLAEAVNGL----PTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLI 271 + + YL E + W + + S+VN I Sbjct: 248 KSYVELYLKSLEKKKLTESGESTEDLQTPTILYEKVNDRWEVAFSSSEASFQQVSFVNSI 307 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T GGTHVN + ++ + E + ++ I + ++ +++P F Sbjct: 308 ATTSGGTHVNYITDQIVKKVSEAIKKKSKKTVK----PFQIKNNMFIFINSLIENPAFTS 363 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL 391 QTKE+L++R + + FI + + + + ++A + Q ++ + + ++ Sbjct: 364 QTKEQLTTRVRDFGSKCELSNVFINKIMK-TDFFDKILDVANQNDQNALKKSDGTRKIRI 422 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTW 448 T P L ++ ++ L L EGDSA A R+Y PL+GK+LN Sbjct: 423 TEYPKLED-ANKAGTKEGHKCTLILTEGDSALSQAVLGLTVVGRDYFGCYPLRGKMLNVR 481 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALF 506 E S+D++ + E+ I +G+ +D LRYG + I+ D D DG HI L+ Sbjct: 482 EASADQINKNAEIEAIKKIMGLQHKKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINFL 541 Query: 507 VKHFRALVKHG-HVYVALPPLYRIDLG---KEVYYALTEEEKEGVLEQLKRKKGKPNVQR 562 F L+ + + P+ ++ + K+ + E ++ + + Sbjct: 542 ETSFPGLLNIPEFLQEFITPIIKVKISKPRKQTIQFYNIPDYEKWRDEEGQNC-TWKHKY 600 Query: 563 FKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 +KGLG + RE D + + + ++D ++++ +KK+++DR+ WL++ Sbjct: 601 YKGLGTSLGQEFREYFADLDRHLKIFHQLQEDD----KKLIELAFSKKKADDRKEWLRQY 656 Query: 623 GDMAEIE 629 ++ Sbjct: 657 EPGTVLD 663 >UniRef50_A7I8U0 DNA gyrase subunit B n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I8U0_METB6 Length = 708 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 168/485 (34%), Positives = 259/485 (53%), Gaps = 15/485 (3%) Query: 155 TCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWC 214 T G + TGT +HF PD + F++ F L H L+ A L G+ I DE +C Sbjct: 230 TLGNKLTGTRIHFVPDASIFETTTFDYDVLAHRLRELAFLNAGLTIIITDERTGDSATYC 289 Query: 215 YQDGLNDYLAEAVNGLPTLPEKPFIGNFA--GDTEAVDWALLWLPEGGELLTESYVNLIP 272 Y GL++++ G L P + ++ A+ + G + +YVN + Sbjct: 290 YAGGLSEFVKYLNEGNEVLHPNPIYITKKDAENKLDLEVAMQYT-TGYDEKLYTYVNSVN 348 Query: 273 TMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLS--AEDIWDRCAYVLSVKMQDPQFA 330 T +GGTH+ G R + + + I+ +++ ED+ + V+SVKM +PQF Sbjct: 349 TREGGTHLEGFRSAITRGINVVAKRNGIIKENAQVTLRGEDVREGLTSVVSVKMANPQFE 408 Query: 331 GQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA---KKVV 387 GQTK RL + V +V A + ++N +++ E A+S+A+ R A Sbjct: 409 GQTKMRLGNSSVKGIVDSLVYAALTEYFDENPGVLKIIVEKALSAAKAREAARNARDLAR 468 Query: 388 RKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNT 447 RK LPGKL+DC+ +D ++E+++VEGDSAGGSAKQ RDR++QAI+PL+GKILN Sbjct: 469 RKSSLESAGLPGKLSDCSERDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKILNV 528 Query: 448 WEVSSDEVLASQEVHDISVAIGIDPDS-DDLSQLRYGKICILADADSDGLHIATLLCALF 506 + ++L + E+ + AIG D + RY +I I+ DAD DG HI TLL F Sbjct: 529 EKAGEHQILKNAEIQTLINAIGTGIGEKFDPERARYHRIVIMTDADVDGAHIRTLLLTFF 588 Query: 507 VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL 566 ++ R L++ G+VY+A PPL+RI GKE Y E E + V + K ++QR+KGL Sbjct: 589 YRYMRKLIELGYVYIAQPPLFRIAKGKEEKYVYKEAEMQKVSAAMGDKG--VSIQRYKGL 646 Query: 567 GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD-M 625 GEMN QL +TT+DP R ++++I ED D M L+ K E R+N++ + Sbjct: 647 GEMNAQQLWDTTMDPENRIFLKVSI--EDAYEADEMFKTLMGKD-VEIRKNFIMRHAKEV 703 Query: 626 AEIEV 630 +++ Sbjct: 704 TNLDI 708 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 79/159 (49%), Positives = 101/159 (63%), Gaps = 3/159 (1%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDV 57 MT TY+A I VL GL+PVR RP MY +T +HL EV+DNS+DEALAG R+ V Sbjct: 1 MTDTYDASHITVLEGLQPVRERPAMYIGSTDTRGLHHLVYEVVDNSIDEALAGFCNRICV 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 +++ D SL V D+GRG+PVD + A+E++L LHAGGKF + YQ SGGLHGVG+S Sbjct: 61 VINKDGSLMVEDNGRGIPVDTMEKNHKSALEVVLTVLHAGGKFDKETYQVSGGLHGVGVS 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC 156 VVNALS + V RDG +Y + F G+ L Sbjct: 121 VVNALSNWLSARVYRDGNIYEMRFSQGKTTLPLTTREET 159 >UniRef50_D0RNK2 DNA topoisomerase IV, B subunit n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNK2_9RICK Length = 646 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 228/649 (35%), Positives = 372/649 (57%), Gaps = 24/649 (3%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDV 57 +++TY+A IEVL GL PVR+RPGMY T +HL E++DNS+DEA+AG+AK + + Sbjct: 3 ISKTYSAKDIEVLEGLAPVRKRPGMYIGGTDETAYHHLANEILDNSIDEAVAGYAKEIVI 62 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 L ++ + DDGRG+P+D HP++ A+E+++ LH+GGKF++ Y+ S GLHGVG+S Sbjct: 63 KLVNKNTIIISDDGRGIPIDKHPKKKKTALEVVMTTLHSGGKFNDSVYKSSAGLHGVGLS 122 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD-S 176 VVNALS ++ + V + ++Y+ + G+ + L+ G K GT + F PD F Sbjct: 123 VVNALSSKLNIQVTKSSKIYSQDYSKGKILNKLKTKGK-NKIKNGTQITFSPDPEIFGKD 181 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEIN--------NTEQRWCYQDGLNDYLAEAVN 228 F ++ + K KA L G++I+++ + +++ + GL D+L +N Sbjct: 182 VNFKPEKIYELAKNKAYLQKGIKISWECNKDLLNRKSSVPSKETLLFSKGLEDFLKNEIN 241 Query: 229 GLPTLPEKPFIGNFAGDTEAVDWALL-WLPEGGELLTESYVNLIPTMQGGTHVNGLRQGL 287 L EK + + + + +++ N + M GGTH G R G+ Sbjct: 242 QNNVLHEKVSFQSGNLEDKKGKIEFALQFNKEKIKYNKAFCNTVYNMNGGTHDAGFRSGI 301 Query: 288 LDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 ++R++ + +N K + +DI+D+ AY++SV + +P+F GQTK +LSS + Sbjct: 302 AKSIRKYAKNKN-NKIVSKATQDDIFDQAAYIISVYISNPEFEGQTKHKLSSNFVQKYCD 360 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQRR--MRAAKKVVRKKLTSGPALPGKLADCT 405 AF WLN+N +AA+ + + + + + V R+ LPGKL+DCT Sbjct: 361 SFASSAFDEWLNRNSKAAKNILNVLEEKIREKNIYDLNQNVERQSAFRKIRLPGKLSDCT 420 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 + TELF+VEGDSAGGSAKQARDR QAI+PL+GKILN ++ ++LA+ E++++ Sbjct: 421 SDKTEGTELFIVEGDSAGGSAKQARDRTTQAILPLRGKILNVKSSNAAKILANSEINNLL 480 Query: 466 VAIGIDPDSDDLSQ-LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALP 524 A+G + + LRY KI I+ DAD DG HI+TLL F+ L+ GH+Y+A+P Sbjct: 481 QALGCGRGKNYSKKDLRYEKIIIMTDADVDGDHISTLLLTFFISEMPQLILDGHLYLAVP 540 Query: 525 PLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTR 584 PLY++++ + YA+ E E KK K + RFKGLGEM P QL+ETT++ TR Sbjct: 541 PLYKLNISGKSTYAIDESE--KNKLLKDNKKAKIEISRFKGLGEMMPAQLKETTMNIETR 598 Query: 585 RLVQLT--IDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA-EIEV 630 +L+++ + ++T+ ++ L+ K +E R ++ E + + +++ Sbjct: 599 KLIKVVLPVQKPKMKKTNKLVSDLMGKN-AELRLKFISENANKSLSLDI 646 >UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID=D1ZCL6_SORMA Length = 1915 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 133/669 (19%), Positives = 259/669 (38%), Gaps = 57/669 (8%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVID 41 + + LT LE + +RP Y + + E++ Sbjct: 128 EMYQKLTQLEHILKRPDTYIGSVERSEQKMWVFNKATGLMENRQISFVPGLYKIFDEILV 187 Query: 42 NSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK 99 N+ D + + V ++ + + V ++G+G+PV+IH E ELI L AG Sbjct: 188 NAADNSQRDSSMTFLKVSINRESGEISVENNGKGIPVEIHGTEKCYVPELIFGHLLAGSN 247 Query: 100 FSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTCG 157 F + + GG +G G + N S+ + + +G+ Y + + + Sbjct: 248 FDDNEKKTVGGRNGYGAKLTNIFSREFILECQDSVNGKRYKQTWTDNMSKMSTPKIT-SN 306 Query: 158 KRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD 217 K + F PD + F L +L + G K +N + ++ Sbjct: 307 KAADFVRITFRPDFSKFGMADGIDDDLEALLYRRVYDMAGTVSGIKVWLNGEHLKLNFKT 366 Query: 218 GLNDYLAEAVNGLPTL--PEKPFIGNFAGDTEAVD---WALLWLPEGGELLTESYVNLIP 272 Y + E + + + W + + G S+VN I Sbjct: 367 YCGLYAKAIAKERDEVADGEDVTPATVIFEQQRSEGKLWEVGFTVSDGSFQQVSFVNNIA 426 Query: 273 TMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQ 332 T GG+HVN + +++ + + + + +G L ++ ++ ++ + +P F+ Q Sbjct: 427 TTSGGSHVNYIADQIIEVLMKELQRKKG--KGHGLKTANVKNQFFIFINCLIDNPAFSSQ 484 Query: 333 TKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT 392 TKE+L+++ + D F+ + + +A + L A + + RK+++ Sbjct: 485 TKEQLTTKPARFGSKCQLGDQFLKKV-RQSEAIDNLLSFADKKRDKDLAKNDGSKRKRIS 543 Query: 393 SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWE 449 + + + L L EGDSA G A R D + PL+GK+LN + Sbjct: 544 NDKLIE--ANYAGGKYSQECTLILTEGDSARGLAVAGRAILDPNRIGVFPLRGKMLNVRD 601 Query: 450 VSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFV 507 S+D++L ++EV +I +G+ D LRYG + I+AD D DG HI LL F Sbjct: 602 ASADQILKNKEVENIKKFLGLKHGKVYTDTKDLRYGHLMIMADQDLDGSHIKGLLINFFE 661 Query: 508 KHFRALVK-HGHVYVALPPLYRIDLG------KEVYYALTEEEKEGVLEQLKRKKGKPNV 560 F +L++ + P+ ++ G +++ T + E E K + + Sbjct: 662 CQFPSLLRIPNFFQEFITPVVKVWQGPNPRKPQKLQGFFTLPQYEEWKESHKNELRRWKY 721 Query: 561 QRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 + KGLG + + + E+ M ++ +KK+++ R+ WL Sbjct: 722 KYLKGLGSSTTDDAQIYFTNLTKHLKEFDVMTREE----SEMFELAFSKKKADARKEWLA 777 Query: 621 EKGDMAEIE 629 + ++ Sbjct: 778 KCEPGTYLD 786 >UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group RepID=TOP2_YEAST Length = 1428 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 139/668 (20%), Positives = 266/668 (39%), Gaps = 57/668 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 +D + ++ LE + +RP Y + + E++ Sbjct: 9 SDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEIL 68 Query: 41 DNSVDEALAGH-AKRVDVILH-ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + KR+DV +H + ++EV +DG+G+P++IH +E + E+I L Sbjct: 69 VNAADNKVRDPSMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSS 128 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S + GQ Y +EN + + + Sbjct: 129 NYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY 188 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-QRWCY 215 K + T V F PD T F L V++ + G +N + + Sbjct: 189 KKGPSYTKVTFKPDLTRFGMKELDNDIL-GVMRRRVYDINGSVRDINVYLNGKSLKIRNF 247 Query: 216 QDGLNDYLAEAVN-----GLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNL 270 ++ + YL K I + W + + S+VN Sbjct: 248 KNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYERINNRWEVAFAVSDISFQQISFVNS 307 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFA 330 I T GGTHVN + ++ + + + I + ++ +++P F Sbjct: 308 IATTMGGTHVNYITDQIVKK----ISEILKKKKKKSVKSFQIKNNMFIFINCLIENPAFT 363 Query: 331 GQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKK 390 QTKE+L++R + +I + + A + E+A ++ + ++ + + + Sbjct: 364 SQTKEQLTTRVKDFGSRCEIPLEYINKIMK-TDLATRMFEIADANEENALKKSDGTRKSR 422 Query: 391 LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNT 447 +T+ P L ++ + L L EGDSA A R+Y PL+GK+LN Sbjct: 423 ITNYPKLED-ANKAGTKEGYKCTLVLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNV 481 Query: 448 WEVSSDEVLASQEVHDISVAIGIDP--DSDDLSQLRYGKICILADADSDGLHIATLLCAL 505 E S+D++L + E+ I +G+ +D LRYG + I+ D D DG HI L+ Sbjct: 482 REASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGLIINF 541 Query: 506 FVKHFRALVK-HGHVYVALPPLYRI---DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQ 561 F L+ G + + P+ ++ K + E E+ + K + Sbjct: 542 LESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWREE-ESHKFTWKQK 600 Query: 562 RFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 +KGLG ++RE + + + ++ D +D+ +KK+++DR+ WL++ Sbjct: 601 YYKGLGTSLAQEVREYFSNLDRHLKIFHSLQGND----KDYIDLAFSKKKADDRKEWLRQ 656 Query: 622 KGDMAEIE 629 ++ Sbjct: 657 YEPGTVLD 664 >UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii RepID=B9PK68_TOXGO Length = 1688 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 141/749 (18%), Positives = 262/749 (34%), Gaps = 143/749 (19%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + + LE + RP Y +T + E++ Sbjct: 38 EQRYQKKSQLEHILLRPDTYIGSTEVHTQALWVMEEGQETMVYKTINYVPGLYKIVDEIL 97 Query: 41 DNSVDEALA--------------GHAKRVDVILHA-DQSLEVIDDGRGMPVDIHPEEGVP 85 N+ D + + ++ + + +DG G+PV IH E V Sbjct: 98 VNAADVKAREGEEQKGKPLKPGARRMSAIKIDINKASGRISIWNDGEGIPVAIHQEHKVY 157 Query: 86 AVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFEN 143 E+I +L + + + +GG +G G + N S+ V + + + + Sbjct: 158 VPEMIFGQLLTSDNYDDSECRVTGGRNGYGAKLTNIFSREFTVECADGERKKKFKMTWTK 217 Query: 144 GEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFK 203 + + + + + F PD F F L+ +L+ +A G K Sbjct: 218 NMEQKSESEISSYNG-TDYVKISFIPDFAKFGMTGFDDDSLS-LLRKRAYDLAGTS-GVK 274 Query: 204 DEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDW------------ 251 +N T + + Y+ + G + EKP D DW Sbjct: 275 VFLNGTRIDI---NSFSQYVDLYLGGRKS--EKPSKEKEEFDESDDDWDEGPKRKKAAKK 329 Query: 252 --------------------------------ALLWLPEGGELLTESYVNLIPTMQGGTH 279 ++ +GG+ S+VN I T +GGTH Sbjct: 330 NGKKGELEDEEDVANGVEKKVIKIHDKQWRWEVVISSTDGGQFQQVSFVNSICTTKGGTH 389 Query: 280 VNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS 339 V+ + + LL A+ + +N G+++ A + +S + +P F QTKE L++ Sbjct: 390 VSHVIEPLLAAIVKKANTKN--KGGMEIKAAHVKQHLWIFVSCLIVNPAFDSQTKETLTT 447 Query: 340 RQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA----------------------- 376 + + D I + ++ ++ Sbjct: 448 KPAKFGSKCTLADKTIGQVVKSSIVENVVLWAQTKQQSVRAFSLSLLDCWRRGALSVDRP 507 Query: 377 ----------QRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSA 426 +++M+ K R++L P L D + L L EGDSA S Sbjct: 508 VFRLFVFVELRKQMKVGKTKGRERLAGIPKLED-ANDAGGRHSQDCTLILTEGDSAKTSC 566 Query: 427 KQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD--SDDLSQLR 481 R+ + PL+GK+LN + S ++ ++E+ +I +G+ + ++D LR Sbjct: 567 LAGLSVVGRDRYGVFPLRGKLLNVRDASFKQLTENKEIQNILKIVGLQVNDRTEDTRGLR 626 Query: 482 YGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALT 540 YG + I+ D D DG HI LL + ++ L+K G + P+ ++ T Sbjct: 627 YGSVMIMTDQDHDGSHIKGLLINMMHHYWPQLLKCRGFLKAFSTPIVKVSKNNVEKAFYT 686 Query: 541 EEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTD 600 E E ++ +KGLG + +E D + ++ + D Sbjct: 687 IPEYEQWKRSCNTTG--WKIKYYKGLGTSTDREFKEYFNDLDKHQIDFVWSGQHDG---- 740 Query: 601 AMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++DM KKR+EDR+ WLQ + ++ Sbjct: 741 ELIDMAFNKKRAEDRKRWLQSYQEGTFVD 769 >UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyostelium discoideum RepID=TOP2_DICDI Length = 1521 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 136/661 (20%), Positives = 258/661 (39%), Gaps = 60/661 (9%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT------------------------RPNHLGQEVIDN 42 + + L+ + RP Y +T + E++ N Sbjct: 104 EEIYQKKELLDQILLRPDTYIGSTERQEEELWVWEDKRMVHRKVSFVPGIYKIFDEILVN 163 Query: 43 SVDEALA-GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 + D G+ K + V++ + + V +DG G+P+ +H E + ELI L + Sbjct: 164 AADNKQREGNMKFIKVVIDREKGFISVTNDGAGIPIQVHSEHKIYIPELIFGNLLTSSHY 223 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTCGK 158 + + +GG +G G + N S + V ++Y F N + ++ + + Sbjct: 224 DDSEKRLTGGRNGFGAKLANIFSTKFIVECADSKSKKLYKQTFTNNMRSKEDPKITSYQN 283 Query: 159 RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRW-CYQD 217 + T + F+P+ F F L +L + G T K +N+ E ++ Sbjct: 284 KTDYTKITFYPELDRFGMVEFD-DDLVALLSKRVYDIAGCNPTLKVSLNDEELGIRSFEK 342 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPE-GGELLTESYVNLIPTMQG 276 +N Y P++ + + W L + S+VN I T++G Sbjct: 343 YINLY----------FPDEENAPKVYYEKVSDRWELAVTLSKESQFNQVSFVNSICTVKG 392 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 GTHV ++ A++E +N + I + + ++ +++P F QTKE Sbjct: 393 GTHVTHALSNIVTAIQEQVNKKN--KGSADIKPAFIKNHLSVFVNCLIENPHFDSQTKET 450 Query: 337 LSSRQCAAFVSGVVKDAFILW-LNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGP 395 L+S+ + + FI L+ + E A Q ++ + KK Sbjct: 451 LTSKISSFGSRCEPSEKFIKRVLDSKSGIVASILEFAQFKDQSALKRSTSSGGKKGKVSI 510 Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQA---RDREYQAIMPLKGKILNTWEVSS 452 L L EGDSA A +++ PLKGK+LN + S+ Sbjct: 511 PKLDDANLAGGTKSEDCTLILTEGDSAKSLATAGISVVGKDHYGAFPLKGKLLNVRDQST 570 Query: 453 DEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHF 510 +V+ + E+++I +G+ + LS LRYG + I+ D D DG HI L+ + + Sbjct: 571 -KVINNDEINNIVTILGLKYGKVYETLSDLRYGHLMIMTDQDHDGSHIKGLIINMVHHFW 629 Query: 511 RALVK-HGHVYVALPPLYRIDLGKEV-YYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGE 568 L++ G + + P+ ++ + T E E +V+ +KGLG Sbjct: 630 PTLLRMPGFLVEFITPIVKVFKNNQKPISFYTMPEFLKWRE---TNDKGWDVKYYKGLGT 686 Query: 569 MNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEI 628 P + +E D ++ E D+ + +++ +K R++DR+ W+ E + + Sbjct: 687 STPGEGKEYFSDLERHKIDF-----EWDEGANDNIELAFSKSRADDRKKWMAEHIEGTFL 741 Query: 629 E 629 E Sbjct: 742 E 742 >UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermophila RepID=Q6PUA3_TETTH Length = 1662 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 134/660 (20%), Positives = 261/660 (39%), Gaps = 54/660 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTR--------------------------PNHLGQEVI 40 + T LE + RP Y + + E++ Sbjct: 4 ETTYQKKTQLEHILLRPDTYVGSNEYQDEQMWVLADDGSSFENRQIKYVPALYKIFDEIL 63 Query: 41 DNSVDEALAG-HAKRVDVILH-ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D KR+DVI+ + + +++DG+G+PV IH E + ELI L Sbjct: 64 VNAADNYQRDKRMKRLDVIIDQKNNCISILNDGKGIPVQIHKEYNIYVPELIFGHLLTSS 123 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTC 156 ++++ + GG +G G + N S + V + + + + + Q + + Sbjct: 124 NYNDEEKKVVGGRNGFGAKLTNIFSTKFIVESADSKNKKKFQMTWTKNMSEQSEPQISSY 183 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVE-ITFKDEINNTEQRWCY 215 + + T + F+PD F + ++K + GV + K +N Sbjct: 184 TESD-YTKITFYPDLKKFHMKELEKD-IVDLMKKRVYDMAGVIGGSVKVSLNGERISISS 241 Query: 216 QDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQ 275 +DY + + + T W ++ G+ S+VN I T + Sbjct: 242 ---FSDYCDFYLKNQGA---EVIKVSDNKGTNNQRWEVIASLSEGQFQQVSFVNSICTSK 295 Query: 276 GGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 GGTHVN + + + + E + + + + + + ++ +++P F QTKE Sbjct: 296 GGTHVNYITDQITEKLMETLKKKE---KSLNIKQFQVKSHLWIFVNCLIENPSFDTQTKE 352 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGP 395 L+ RQ + + V + FI L + + A + Q +M ++ G Sbjct: 353 TLTLRQQSFGSTCEVSEKFIKELLK-SNIINHILLQARAKEQAKMAKTLSAKKQSRLLGV 411 Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQA---RDREYQAIMPLKGKILNTWEVSS 452 D ++ L + EGDSA A R+ + PLKGK+LN + +S Sbjct: 412 PKLEDANDAGTRNAESCTLIITEGDSAKALAMSGIEVVGRDKFGVFPLKGKMLNVRDSTS 471 Query: 453 DEVLASQEVHDISVAIG--IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHF 510 ++ + E+ +I +G ++ + D++ LRYG I I+AD D DG HI L + Sbjct: 472 KQITENLEIQNIIKVMGMKLNTNYDNVKSLRYGSIMIMADQDHDGSHIKGLFINFIQNFW 531 Query: 511 RALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEM 569 +L + G + + P+ ++ G + + ++ + + ++ +KGLG Sbjct: 532 PSLFQMDGFLKEFITPIVKVRKGNQSISFFSIQDFKRWKSTCPNQH-LWKIKYYKGLGTS 590 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + +E + N + + +DD+ +D+ KKR+EDR+ WL + ++ Sbjct: 591 TDQEAQEYFGNINKHVISF-KYNGKDDEDA---IDLAFNKKRAEDRKKWLVKYDPEENVD 646 >UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=A8Q6X4_BRUMA Length = 1178 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 124/657 (18%), Positives = 253/657 (38%), Gaps = 57/657 (8%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTT---------------------------RPNHLGQEVI 40 + + LT L+ + RP Y T + E++ Sbjct: 63 EKYQRLTPLKHILYRPDSYIGPTFLSDEQPIYVYDDITKQILKKEARIVPGLLKIFDEIL 122 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + + + + ++ + ++GRG+PV+IHP EG+ +I L Sbjct: 123 VNAADNKRRDPQMTTIAINIDKERNTISIWNNGRGIPVEIHPREGIYVPTMIFGTLFTSS 182 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFENGEKVQDLQVVGTC 156 + + + GG +G G + N S V G + + N D ++ Sbjct: 183 NYDDSELKIVGGRNGFGAKLCNIFSTEFSVETCTKQSGLRFFQCWRNNMNDVDDPIISDA 242 Query: 157 GK-RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY 215 + T V F PD + F + +++ V G +N T+ Sbjct: 243 STNASDYTCVTFKPDLSKFKLSTLDEDTIQVMIRRI-VDIAGTLDGVNVFLNGTKIEVS- 300 Query: 216 QDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQ 275 G DY+ E + ++ + W + S+VN I T++ Sbjct: 301 --GFKDYVKLFSTYTGESVENSTVPSYC--SVNDRWQIAVARSDTGYNHISFVNNINTLK 356 Query: 276 GGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 GG HV+ + ++ ++ R + +SA I +R ++ +++P F Q+KE Sbjct: 357 GGRHVDYIVNQIVSRLKHEINQRYGCDKF--ISAHQIKNRLHIFVNSLIENPAFESQSKE 414 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGP 395 L++ + +V ++F ++ + + +Q+ + + + + L Sbjct: 415 YLTTSVKNFGSTCIVPESFYENFIKDSDI---IHHLLCDISQQHTTSLNRSMNRSLWDLS 471 Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSS 452 L AD ++ L + EGDSA A R+ + P++GK+ N + + Sbjct: 472 KLED-AADAGTKNGCNCTLIITEGDSAKALAVAGLAVIGRKQYGVFPIRGKLTNVRGMDA 530 Query: 453 DEVLASQEVHDISVAIGIDPDS-----DDLSQLRYGKICILADADSDGLHIATLLCALFV 507 + + E+ + +G+ + L LRYG++ I+ D D DG HI L+ Sbjct: 531 KMAVENAEISALVRILGLKFGENYSSHEKLKSLRYGRLLIMTDQDPDGSHIKGLIVNFLH 590 Query: 508 KHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLG 567 ++ +L+K +V + PL + G ++ + + E + K +++ +KGLG Sbjct: 591 VYWPSLLKANYVSYFITPLLKAKRGSDIKSFYSTADYEKWRAENPDS-VKYSIKYYKGLG 649 Query: 568 EMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD 624 + + RE D + + D + +D +++ AK +++DR+ W+ E Sbjct: 650 TSSAKEAREYFNDIERHTVNFIY----DGKISDESIELAFAKNKADDRKVWIAESSK 702 >UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae RepID=A4HGT2_LEIBR Length = 1501 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 138/662 (20%), Positives = 253/662 (38%), Gaps = 59/662 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + T E + RP MY T + E++ Sbjct: 6 EQIYQKKTQHEHILTRPDMYIGTIEPVTDDIWVYDDAENIMKQRKCTWTPGLYKIFDEIL 65 Query: 41 DNSVDEALAGH-AKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK 99 N+ D + + V + + + V ++G G+P+ H E + E+I L Sbjct: 66 VNAADNKVRDPLGQTVIRVWMTEDYVRVYNNGEGIPIQRHREHDLWVPEMIFGHLLTSSN 125 Query: 100 FSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCG 157 + ++ + +GG +G G + N SK+ EV R + + + + N D ++ C Sbjct: 126 YDDEEAKVTGGRNGFGAKLTNVFSKQFEVETVHSRSRKKFYMKWTNNMLQHDDPIIVPC- 184 Query: 158 KRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD 217 + T V F+PD F +FS L ++K + G N E+ C Sbjct: 185 ESADYTMVTFYPDFARFHVDKFSEDILL-MMKRRVYDVAGCTDKTLKCFLNDERIAC--T 241 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 +Y+ PT+ E+ + W L S+VN I T +GG Sbjct: 242 TFPEYVDLY----PTMGEERKAAS--YSRANDRWELCVRVSNIGPQQVSFVNSIATTRGG 295 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 THV + ++ + E + + + + I ++ + +P F QTKE L Sbjct: 296 THVKYIMDQIVTKVVEQAKKKKKTD----VKSHMIRPHIFLFVNCLIDNPSFDSQTKETL 351 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPAL 397 ++ + + + ++ + ++ + + EMA S + M + K +K G Sbjct: 352 NTVKSKFGSTCDLPNSIVDYIMNSGIVERSV-EMANSKIAKEMASKIKSSDRKQIMGIPK 410 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDE 454 + + +R L L EGDSA DR+Y + PL+GK LN E S + Sbjct: 411 LDDANEAGGKHGHRCTLILTEGDSAKTLCTAGLAVKDRDYFGVFPLRGKPLNVREASLKK 470 Query: 455 VLASQEVHDISVAIGIDP--DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRA 512 + A +E+ + +G+D ++ LRYG + I++D D DG HI LL + Sbjct: 471 LAACEEIQCVMKIMGLDIRQKYENTDGLRYGHLMIMSDQDHDGSHIKGLLINFIHCFWPN 530 Query: 513 LVK-HGHVYVALPPLYRID-LGK----EVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL 566 L++ G + + P+ + G+ + + + + + ++ +KGL Sbjct: 531 LLRVPGFLQQFITPIVKARPKGRGGAGKAISFFSMPDYFEWKKAIGDNLSNYQIRYYKGL 590 Query: 567 GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 G + RE + + RL + E DQ + + M K R EDR+ W+ Sbjct: 591 GTSGAEEGREYFENIDRHRLSFV----EQDQSEEDRIVMAFGKDRVEDRKEWITNFKTNV 646 Query: 627 EI 628 + Sbjct: 647 NV 648 >UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIW3_ENTBH Length = 1159 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 138/657 (21%), Positives = 257/657 (39%), Gaps = 57/657 (8%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + + T E + RP Y + + E++ Sbjct: 6 EEIYQKKTPKEHILLRPDTYIGSVEIDTQSAFVWDNMQEKIVLKNVKFAPGLYKIFDEIL 65 Query: 41 DNSVDEALAGH-AKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGK 99 N+ D + V ++ S+ + +DG G+P++IH +E V ELI L Sbjct: 66 VNAADNKQRDPRMTYIKVYINEM-SVSIENDGNGIPIEIHQKEQVYVPELIFGHLLTSSN 124 Query: 100 FSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKR 159 +++ + +GG +G G + N S EV G+ Y+ F+N ++ + + Sbjct: 125 YNDNEKKVTGGRNGYGAKLCNIFSVHFEVETVSKGRKYSQVFKNNMEIIGKPTISAYSGK 184 Query: 160 NTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGL 219 + T + F PD F F ++ K +C + +N+ + + L Sbjct: 185 D-YTKITFVPDFKRFGMSLFDSDIISIFYKRVYDMCA-TVKNTEIYLNDKKLMI---NNL 239 Query: 220 NDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTH 279 +Y ++ L K W + + + S+VN I T +GGTH Sbjct: 240 KEYAQLYLSHDVKLVTK---------KINDRWEIACASTDEQFMQVSFVNSICTSKGGTH 290 Query: 280 VNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS 339 VN + L+D + + R + + L ++ + ++ +++P F QTKE L+ Sbjct: 291 VNHVLDQLMDPLISAVKKR---DKTLVLKPLNVKNNLFLFINALIENPIFDSQTKENLTL 347 Query: 340 RQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPG 399 + A D I + +N + + + ++ V K+ P L Sbjct: 348 KSSAFGSKCQPIDDIIKDIIKNTDIIDKIITFSKIKQAVLLKKTDGVKTTKIVGIPKLED 407 Query: 400 KLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVL 456 + + L L EGDSA A R+ + PL+GK+LN E S+ +++ Sbjct: 408 -ANFAGTKRSSECTLILTEGDSAKTLAVAGLSVVGRDKYGVFPLRGKLLNVREASNKQIM 466 Query: 457 ASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV 514 + E+ I +G+ D + LRYG I I+ D D DG HI L+ F +L+ Sbjct: 467 DNAEISAIKKILGLQHGKTYTDTTSLRYGHIMIMTDQDFDGSHIKGLIINFLDYFFPSLL 526 Query: 515 KH-GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKR-KKGKPNVQRFKGLGEMNPM 572 K G + + P+ R KE Y T E E +Q+++ K ++ +KGLG Sbjct: 527 KILGFLQEFITPIVRATKKKEKYDFFTIPEYEKFKQQIEQIKDSGWVIKYYKGLGTSTTD 586 Query: 573 QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++ + + ++ ED ++D+ KK+++DR+ W+ ++ Sbjct: 587 DAKQYFNNLKLHVKTFIPVELEDR----ELIDLAFNKKKADDRKEWIGRFEPGTFLD 639 >UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=TOP2M_DICDI Length = 1284 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 124/611 (20%), Positives = 259/611 (42%), Gaps = 28/611 (4%) Query: 31 RPNHLGQEVIDNSVDEALAG-HAKRVDVILHA-DQSLEVIDDGRGMPVDIHPEEGVPAVE 88 + E++ N+ D + V ++ + S+ +++DG+G+PV +H E VE Sbjct: 172 GLLKIYDEILVNAADNKKRDSKMSFIKVEINPNENSISIMNDGKGIPVVMHQTENCYVVE 231 Query: 89 LILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEK 146 +++ L +G F++ + GG +G G + N SK V + G+ Y + N Sbjct: 232 MVMGNLMSGSNFNDSELKVVGGRNGFGAKLTNIFSKEFTVETVDKSSGKKYFQRWSNNMG 291 Query: 147 VQDLQVVGTCGK-RNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 + ++ G+ + T + F PD F + +++ + G Sbjct: 292 DRSEPIITPIGEGESDYTKITFKPDLEKFKIKSLWDDNILQLMERRLYDIAGCNTELMVT 351 Query: 206 INNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGD--TEAVDWALL-WLPEGGEL 262 +N + +Q + Y N + + + + W + L E G+ Sbjct: 352 LNGKRLNYNFQSYVKLYEHHLNNSTKREDNEEQYREESFEFGEISPRWKIGIGLSETGQF 411 Query: 263 LTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSV 322 S+VN I T++GGTHVN L ++ + E + ++ +++ +I A ++ Sbjct: 412 TQVSFVNSINTVKGGTHVNFLADQIVRYVGEKLKKKH---SDLEIRPMNIKHHLALFVNC 468 Query: 323 KMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA 382 + +P F Q+KE L+++ + + ++ + +N + E +A A+ + + Sbjct: 469 LVDNPSFDSQSKETLTTKPMLFGSTPEIPESLLAQFVKNSKIIERVAGWALMKQKADLIH 528 Query: 383 AKKVVRKK--LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAI 437 + + K L + L + EGDSA A R + Sbjct: 529 STSGRQSKTTLIKSISKLDDANWAGGLKSKECTLIITEGDSAKSLALAGLSVVGRNSYGV 588 Query: 438 MPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-----DDLSQLRYGKICILADAD 492 PL+GK+LN +V+S ++L+++E+++++ +G+ + + + LRYG++ I+AD D Sbjct: 589 FPLRGKLLNVRDVASKQLLSNEEINNLTTILGLSHKNSYDTDESMEDLRYGRVMIMADQD 648 Query: 493 SDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL-GKEVYYALTEEEKEGVLEQL 551 DG HI L+ + L+K G + + P+ + + T ++ E E + Sbjct: 649 HDGSHIKGLVMNFIHYFWPNLLKRGFLVEFVTPIIKATKSSTQKKSFFTIKDYEKWRETI 708 Query: 552 KRKK-GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKK 610 + + ++ +KGLG + +E + + + + D+ DD ++ M AK Sbjct: 709 SSDQLKQYTIKYYKGLGTSTSAEAKEYFSNLDKHVIKFIWGDEADD-----LIKMAFAKD 763 Query: 611 RSEDRRNWLQE 621 S R+ W++E Sbjct: 764 LSSLRQRWIKE 774 >UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2UZM0_NAEGR Length = 1457 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 130/669 (19%), Positives = 263/669 (39%), Gaps = 67/669 (10%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---------------------------PNH 34 + + + E + RP Y + Sbjct: 46 KNKTVEEIYQKKSLREQILLRPDTYVGSVNMQEGEDMWIWDDEDKRMKMKTIKFVPALYK 105 Query: 35 LGQEVIDNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILC 92 + E++ N+ D ++ ++ V ++ + + V ++G G+PV IH E + +I Sbjct: 106 IFDEILVNAADHSVRDETCNKIKVTINPEQNEISVYNNGAGIPVKIHAEHKIYVPTMIFG 165 Query: 93 RLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDL 150 L F + + +GG +G G + N S++ V + + + + + ++ Sbjct: 166 HLLTSSNFDDTQKRVTGGRNGYGAKLTNIFSEKFIVETVDSEEKKKFRQTWTQNMEKEEE 225 Query: 151 QVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE 210 + TC K + T + F+PD + F + ++ + K L ++ +N + Sbjct: 226 PKITTCSKAESYTEITFYPDLSKFGMDKLDDDIVSLLKKRVYDLAGTLKTGIGIYLNGKK 285 Query: 211 QRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNL 270 DY+ + + W + G + S+VN Sbjct: 286 ITGM--KTFKDYVKLYTIDKEIHYFE----------DGKRWKVGITLSEGSMQQVSFVNS 333 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFA 330 I T +GG HV+ + + D + + ++ + + I ++ +S + +P F Sbjct: 334 ICTTKGGKHVDHIVNQVSDNI-----KKALVKKNNTIKPAYIKNQLWVFVSSLIINPSFD 388 Query: 331 GQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKK 390 Q+KE L++ + +AF+ + + A+E + + A +++ + + + Sbjct: 389 SQSKETLTTSMKDFGSKCKLDEAFLKKVTKM--ASEAVLKYADFKSEKALNKKSGTKKSR 446 Query: 391 LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNT 447 LT L D +++ + L L EGDSA A R+Y + PLKGK LN Sbjct: 447 LTGISKL-DDANDAGSKNSEKCTLILTEGDSAKALAVGGLSVVGRDYYGVFPLKGKPLNV 505 Query: 448 WEVSSDEVLASQEVHDISVAIGIDPD----SDDLSQLRYGKICILADADSDGLHIATLLC 503 + D+V+ ++E+ ++ +G+ D +D+ LRYG I I+AD D DG HI LL Sbjct: 506 RDCKLDKVVKNEEISTLAKILGLKFDKTYTKEDIKSLRYGSIMIMADQDHDGSHIKGLLI 565 Query: 504 ALFVKHFRALVK-HGHVYVALPPLYRIDLG--KEVYYALTEEEKEGVLEQLKRKKGKPNV 560 K + +L+K G + + P+ + K+ + E E E L KG + Sbjct: 566 NFIHKFWPSLLKIPGFLKEFITPIVKATNNRTKKAVTFFSIPEYETWKEGLSDTKG-WTI 624 Query: 561 QRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 + +KGLG + +E + + + + D D + + +K +++R+ WL Sbjct: 625 KYYKGLGTSTAPEAKEYFSNMSLHQKRF-----KYDTDCDKKITSVFSKAATDERKEWLN 679 Query: 621 EKGDMAEIE 629 + I+ Sbjct: 680 NHQEGTYID 688 >UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A7ANB1_BABBO Length = 1437 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 134/674 (19%), Positives = 251/674 (37%), Gaps = 69/674 (10%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHL 35 Q + + LE + RP Y T + Sbjct: 4 KQKTIEQRYQKKSQLEHILLRPDTYIGNTEMLTQQMWVYNQEAKRMLYEPVTFIPGLYKI 63 Query: 36 GQEVIDNSVDEALA-------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAV 87 E++ N+ D + V +A ++ V +DG +PV+IH E V Sbjct: 64 FDEILVNAADVHARQQSDPSLTRMTCIKVNFNATTGAITVFNDGEPIPVEIHKEHNVYVP 123 Query: 88 ELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGE 145 E+I L + +++ + +GG +G G + N SK V + + + +E+ Sbjct: 124 EMIFGELLTSDNYDDEDGRITGGRNGFGAKLTNIFSKSFSVTCADSKRHKQFAMKWESNM 183 Query: 146 K-VQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVL--CPGVEITF 202 V VG+ ++ V F PD F P L +LK + G+ + + Sbjct: 184 TRVASPAKVGSYHGKD-FVKVTFIPDYERFGIPTMDEGTLKVLLKRVYDVAGTTGLRVYW 242 Query: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGEL 262 DE Y + P + + ++ +G Sbjct: 243 NDERLGISDFKQYVGLY-------------FEDDPTVVKVYDKAHRWEV-MVSATDGSGF 288 Query: 263 LTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSV 322 S+VN I T++GG+HV + + L+ A+ + +N GV+L I + ++ Sbjct: 289 QQVSFVNNITTLKGGSHVQHVLEPLVTALTNKVKSKN--KDGVELKPYQIKNYIFLFVNC 346 Query: 323 KMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA 382 ++ +P F QTKE L+++ ++ + + ++ +L+ + Sbjct: 347 QIVNPTFDSQTKETLTTKPAKFGSKYIMNPKAVAQILKSTLTERILSFAQGRLNIELKKK 406 Query: 383 AKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMP 439 K +G + + L L EGDSA S R+ + P Sbjct: 407 MKVTKAVNRLTGIPKLEDANNAGTRHARNCTLILTEGDSAKTSCLAGLSVVGRDNYGVFP 466 Query: 440 LKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDD---LSQLRYGKICILADADSDGL 496 LKGK+LN + S +++ + E+ +I +G+D + LRYG I I+ D D DG Sbjct: 467 LKGKLLNVRDASYKQLVQNAEIQNILKIMGLDVSKKEQTTPDGLRYGSIMIMTDQDYDGS 526 Query: 497 HIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKK 555 HI LL L + +++ G + + P+ + G V T ++ ++ Sbjct: 527 HIKGLLINLLHYFWPKMIQCRGFIREFVTPIIKATKGDSVLSFFTVQDYVRWVQS--TNV 584 Query: 556 GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDR 615 ++ +KGLG + +E ++ + + D+ DD +D+ KKR +DR Sbjct: 585 AGWKIKYYKGLGTSTDKEFKEYFVNIQQHLIDFIYEDNADDDS----IDLAFNKKRVDDR 640 Query: 616 RNWLQEKGDMAEIE 629 + W+Q ++ Sbjct: 641 KLWMQSYEHGTTVD 654 >UniRef50_Q9HGH7 DNA topoisomerase 2 (Fragment) n=1 Tax=Pichia kudriavzevii RepID=Q9HGH7_ISSOR Length = 804 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 137/649 (21%), Positives = 253/649 (38%), Gaps = 61/649 (9%) Query: 31 RPNHLGQEVIDNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVE 88 + E++ N+ D + KR+DVI++ + + V +DG+G+P++IH +E + E Sbjct: 14 GLFKIFDEILVNAADNKIRDPSMKRIDVIINEEENVISVKNDGKGIPIEIHDKENIYIPE 73 Query: 89 LILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEK 146 LI L + + + +GG +G G + N S V+ G+ Y + N Sbjct: 74 LIFGNLLTSSNYDDDQKKVTGGRNGYGAKLCNIFSTEFTVHTADMSHGKEYTQVWRNNMS 133 Query: 147 VQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 206 + K+N T + F PD + F + L V K + G + + Sbjct: 134 EVGKPKILNFKKKNEFTEIIFKPDLSKFGMEKLDHDIL-GVFKRRVYDLCGSVRGIRVTL 192 Query: 207 NNTEQRWC-YQDGLNDYLAEAVNGLPTLPEKPFIGNFA---------------------- 243 N + ++ + Y+ P P Sbjct: 193 NGELLKINNFKQYVELYVKAINKSKEERPHIPVKIETEDGTPLNGESEANTETSSTPEPS 252 Query: 244 ---------GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 + W + + G S+VN I T GGTHV+ + L + E Sbjct: 253 LNENLPTIVHEIINDRWEIAFCISDGSFNQVSFVNSIATTLGGTHVDDVANMLCGKITEQ 312 Query: 295 CEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG-VVKDA 353 + +N + + I + ++ +++P F QTKE L+++ + + Sbjct: 313 IKRKN---KKAIIKPFQIKSKMFLFINCLVENPAFTFQTKEYLTTQLSKFGGKRLELPEK 369 Query: 354 FILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTE 413 FI + N + + ++ ++A + ++ + ++T P L ++ + Sbjct: 370 FIKKIL-NTGIIDEVLDIVQANADKALKKTDGAKKSRITGYPKLED-ANKAGTREGYKCT 427 Query: 414 LFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 L L EGDSA A Q R Y PL+GK+LN E S+D+++ + + I +G+ Sbjct: 428 LILTEGDSAKSLAVQGLAVVGRNYYGCFPLRGKVLNVREASTDQIMKNGAIQAIKQIMGL 487 Query: 471 DPDS----DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPP 525 DD+ LRYG+I I+AD D DG HI LL F L++ + + P Sbjct: 488 QHKKHYGPDDIKSLRYGRIMIMADQDHDGSHIKGLLINFLEASFPGLLEIPNFLIEFITP 547 Query: 526 LYRID-----LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLD 580 + +I ++ + E E E + +KGLG + ++RE Sbjct: 548 IVKITIMSGPNRRKTIPFYSMPEYEQWRETEGSTCS-YKQKYYKGLGTSSAQEMREYFTQ 606 Query: 581 PNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + + DED +D+ +KK+++DR+ WL+ ++ Sbjct: 607 LDKHLKRFDALRDEDKSS----IDLAFSKKKADDRKEWLRNYQPGTYLD 651 >UniRef50_A8S818 Putative uncharacterized protein n=6 Tax=Bacteria RepID=A8S818_9FIRM Length = 699 Score = 530 bits (1365), Expect = e-149, Method: Composition-based stats. Identities = 195/665 (29%), Positives = 322/665 (48%), Gaps = 42/665 (6%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRVDVI 58 Q Y ++I L G + VR+RP + + H E++ NS+DEA GH ++V Sbjct: 40 KQEYGNESITSLKGADRVRKRPAVIFGSDGVEGCAHSIFEIVSNSIDEARDGHGDTINVT 99 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN--KNYQFSGGLHGVGI 116 D S+ V D GRGMPVD + EG EL+ C ++AGGK+ NY+FS GL+G+G+ Sbjct: 100 RCKDGSVIVEDFGRGMPVDWNNGEGRFNWELLFCEMYAGGKYGEGEDNYEFSLGLNGLGL 159 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 S + ++ RDG Y++ F+ GE V LQ R TG+ +H+ PD+ F Sbjct: 160 CATQYASAWMTADIYRDGYHYHLDFKKGENVGGLQK-EPYKGRRTGSIIHWKPDDEVFTD 218 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEIN-------NTEQRWCYQDGLNDYLAEAVNG 229 S VL+ +AV+ G+ + F DE + WCYQ+G+ DY+AE Sbjct: 219 IDVPGSYYKDVLRRQAVVNAGLTLNFTDEKEKDPATGKPWHESWCYQNGIADYVAEVAGE 278 Query: 230 LPTLP------EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGL 283 P E V + + L E Y N GG+ + + Sbjct: 279 DTLTPVFSCESEAVGRDREDQPDYKVRMSAAFCFSNKVQLLEYYHNSSWLEHGGSPEHAV 338 Query: 284 RQGLLDAMREFCEYRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQC 342 R + + ++ + +N+ +G +S +D+ D YV S + QTK+ ++++ Sbjct: 339 RTAFVYQINKYLKEKNLYKKGESTISFQDVQDCLVYVSSSFSTRTSYENQTKKAITNKFV 398 Query: 343 AAFVSGVVKDAFILWLNQNVQAAELLAE--MAISSAQRRMRAAKKVVRKKLTSGPALPG- 399 + ++ +K ++ + + A+ + + + ++ ++ ++K L++ L Sbjct: 399 SQAMTDFLKHYLEVYFLEKPEEAQKICQQVLVNKQSREHAEKTRQSIKKTLSTQIDLANR 458 Query: 400 --KLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLA 457 K DC +D R EL++VEGDSA G+ K +RD EYQAIMP++GKILN + + Sbjct: 459 VQKFVDCRTRDSARRELYIVEGDSAMGAVKSSRDSEYQAIMPIRGKILNCLKADYARIFK 518 Query: 458 SQEVHDISVAIGIDPD----------SDDLSQLRYGKICILADADSDGLHIATLLCALFV 507 S + D+ +G + + +L LR+ KI I DAD DG I TL+ + Sbjct: 519 SDVIVDLIKVMGCGVELGGKHNKELATFNLDNLRFNKIVICTDADVDGYQIRTLVLTMLY 578 Query: 508 KHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLG 567 + L+ G+VY+A PLY I Y+A TE EK L+++ KK +QR KGLG Sbjct: 579 RLTPTLINKGYVYIAESPLYEITTKDRTYFAYTESEKAAFLQKIGDKK--YTIQRSKGLG 636 Query: 568 EMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM-- 625 E +P + TT++P +RRL+++ D +T + D+LL + R+ + + G Sbjct: 637 ENDPEMMWLTTMNPESRRLIKVM--PTDVVQTAQVFDILLGDNLA-GRKEHIAQHGAEYL 693 Query: 626 AEIEV 630 +++V Sbjct: 694 DDLDV 698 >UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP2_PLAFK Length = 1398 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 147/722 (20%), Positives = 271/722 (37%), Gaps = 104/722 (14%) Query: 1 MTQTYN-ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPN 33 M + + + + +E + RP Y + Sbjct: 1 MAKNKTIEERYQKKSQIEHILLRPDTYIGSVEMHTQLLWVWNKEKNRMVQKNITYVPGLY 60 Query: 34 HLGQEVIDNSVD------EALAGHAKRVDVILHADQ-SLEVIDDGRGMPVDIHPEEGVPA 86 + E+I N+ D E + + ++ + + V +DG G+PVDIH E + Sbjct: 61 KIFDEIIVNAADVKAREKEKSENPMTCIKIEINKENKRISVYNDGEGIPVDIHKEMNIYV 120 Query: 87 VELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENG 144 +I L + + + +GG +G G + N SK V + + + + + Sbjct: 121 PHMIFGELLTSDNYDDAEDRITGGRNGFGAKLTNIFSKEFIVQCGDSSRKKEFKMTWSDN 180 Query: 145 EKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG---VEIT 201 + ++ V F PD F + +L + G V + Sbjct: 181 MSKFSEPHIKNYNGKD-YVKVTFKPDLNKFGMTEMD-DDIESLLFKRVYDLAGTCSVRVY 238 Query: 202 FKDEINNTEQRWCYQDGL-------------------------------------NDYLA 224 + + Y D Sbjct: 239 LNGQRLAVKDFKSYVDLYLKDNSNDNKNNKGQNDNNNNNNNNNDENANQNNDNLDVSLSN 298 Query: 225 EAVNGLPTLPEKPFIGNFAGDTE------AVDWALLWL-PEGGELLTESYVNLIPTMQGG 277 E +G PT N D W ++ +G + S+VN I T +GG Sbjct: 299 EPADGTPTKNNNNNNNNNDEDEIVKIHEKQHRWEIVVSKSDGSQFQQVSFVNSICTTKGG 358 Query: 278 THVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 +HVN + + LL ++ + +N G+++ + I + ++ + +P F QTKE L Sbjct: 359 SHVNYIVEQLLSSLSKKANAKN--KGGMEIKSGHIRNHLWVFVNCLIVNPTFDSQTKETL 416 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAE---MAISSAQRRMRAAKKVVRKKLTSG 394 +++ ++ D I + ++ + +L A +++M+A R+++ Sbjct: 417 TTKPVKFGSKCILSDKTINNVLKSPILSNILLWAQAKAQVELKKKMKAGSSKARERIIGI 476 Query: 395 PALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVS 451 P L D ++ L L EGDSA S R+ + PLKGK+LN + S Sbjct: 477 PKLED-ANDAGSKYSQECTLILTEGDSAKTSCLAGLSIVGRDKYGVFPLKGKLLNVRDAS 535 Query: 452 SDEVLASQEVHDISVAIGIDP---DSDDLSQLRYGKICILADADSDGLHIATLLCALFVK 508 +++ ++E+ +I +G+D + DD+ LRYG + I+ D D DG HI LL + K Sbjct: 536 FKQLMDNKEIQNIFRIMGLDITDKNKDDIKGLRYGSLMIMTDQDYDGSHIKGLLINMIHK 595 Query: 509 HFRALVKH-GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLG 567 + +L+KH G + + P+ ++ G + Y T E E E ++ +KGLG Sbjct: 596 FWPSLLKHKGFLSEFVTPIVKVQKGSQEYSFFTIAEYEQWKENTNLLG--WKIKYYKGLG 653 Query: 568 EMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 + ++ D +++ L D D +DM +KKR EDR+ WLQ + Sbjct: 654 TSTDREFKQYFSDIKNHKIMFLWTGDRDGDS----IDMAFSKKRIEDRKLWLQNFILGSY 709 Query: 628 IE 629 ++ Sbjct: 710 VD 711 >UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV61_PHYIN Length = 1329 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 132/641 (20%), Positives = 245/641 (38%), Gaps = 51/641 (7%) Query: 32 PNHLGQEVIDNSVDEALAGH-AKRVDVILHA-------DQSLEVIDDGRGMPVDIHPEEG 83 + E+I N+VD + + +DVI+ + V +DG+G+PV H E Sbjct: 28 LYKIFDEIIVNAVDNKVRDPSMRHLDVIIEPGSKANGYRPWISVYNDGKGIPVKFHKTEK 87 Query: 84 VPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAF 141 V EL+L L G F + + +GG HG G + N SK V G Y + Sbjct: 88 VYVPELVLGHLLTGSNFDDTAARLTGGRHGYGAKLTNIFSKEFVVETGDTSMGLRYKQVW 147 Query: 142 ENGEKVQDLQVVGTCGKRN--TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVE 199 N + + + ++ T V F PD F+ + + S +T VLK + G Sbjct: 148 HNNMRTRGEPEITEFSGKDAKDFTKVSFSPDLEKFEMEKLTAS-MTRVLKKRVYDVAGCL 206 Query: 200 ITFKDEINNTEQRWC-YQDGLNDYLAEAVNGLPTLPEKPFIG---------NFAGDTEAV 249 + +N + ++ + + N + KP ++ Sbjct: 207 SDVQVTLNGKKLPISGFESYIKTFRYSTTNNPVSKTAKPSKDSDDAASSGSDYIYSRVNK 266 Query: 250 DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSA 309 W + LP + S+VN + ++GG+HV + + + E + + +S Sbjct: 267 RWKIGVLPSDVGFVQVSFVNGMSALRGGSHVGYVSDQICRRVAEHVNKK---FPELSVST 323 Query: 310 EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLA 369 + A ++ ++++P F Q KE ++SR + V+ + + + + E + Sbjct: 324 AQVKPHMAIFINCQIENPTFDSQMKEFMTSRPPTFGSTCVLSERLLKLVLSDSGIVERVV 383 Query: 370 EMAISSAQRR-MRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQ 428 + A + + ++ K + + L L EGDSA A Sbjct: 384 QSARARQRAALLKKVSSTRAKSSSVNVPKLEDANLAGGARSSECSLILTEGDSAKALAVA 443 Query: 429 AR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-----SDDLSQL 480 R+ + PL+GK+LN + + ++ + E + +G+ D + +L Sbjct: 444 GLAVVGRDQYGVFPLRGKLLNVRDATVAQLGKNAEFAHLCTILGLRMDEHYGTEEARQKL 503 Query: 481 RYGKICILADADSDGLHIATLLCALFVKHFRALVKH-GHVYVALPPLYRID--------- 530 RYG++ + D D DG HI LL LF + L+K G + + P+ ++ Sbjct: 504 RYGRVIAMTDQDHDGSHIKGLLFNLFHTFWPELLKEGGFISEFITPIIKVSPTSKRVGTE 563 Query: 531 LGKEVYYALTEEEKEGVLEQLKRKK-GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQL 589 G E + E + ++ +KGLG + RE D + + Sbjct: 564 RGLETRRFFSLPEYFEWKASIDSADLKHYVIKYYKGLGTSTSAEGREYFSDLDNHLVDFH 623 Query: 590 TIDDEDDQRTDAMMDMLLAKKRSEDRRNW-LQEKGDMAEIE 629 D D +DM+ +K R+ DR+ W L E + ++ Sbjct: 624 WSGDNDG----DALDMVFSKARAADRKAWLLNEYSPASYLD 660 >UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS115 RepID=C4R475_PICPG Length = 1344 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 135/679 (19%), Positives = 258/679 (37%), Gaps = 84/679 (12%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 +D + L+ LE + +RP Y + + E++ Sbjct: 64 SDQYQKLSQLEHILKRPDTYIGSVEKHESEQWIYNKETESMERKVVSIVPGLFKIFDEIL 123 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + K ++V + + +EV +DG+ ELI L Sbjct: 124 VNAADNKIRDPSMKNIEVTIKPEENLIEVKNDGK---------------ELIFGNLLTSS 168 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFENGEKVQDLQVVGTC 156 +++ + +GG +G G + N S V G++Y + D V+ + Sbjct: 169 NYNDDQKKVTGGRNGYGAKLCNIFSTEFIVETYDKSSGKLYTQRWSQNMGKTDKPVIKSI 228 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-QRWCY 215 K T V F PD F+ L VL+ + G ++N + + + Sbjct: 229 KKATEYTKVSFRPDLAKFNMTELDEDIL-GVLRRRVFDLCGSVRDISVKLNGEKLKIRNF 287 Query: 216 QDGLNDYLAEAVNGLPTLPEK-----------PFIGNFAGDTEAVDWALLWLPEGGELLT 264 + + Y+ + + + T W + + Sbjct: 288 KQYVEMYVKALEHKNDPIKTEDSSLLPPPSSSSPSQTIVYQTLNDRWEIAFAVSDSTFNQ 347 Query: 265 ESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKM 324 S+VN I T GGTHVN + ++ + + + +N + + I + ++ + Sbjct: 348 VSFVNSIATTSGGTHVNFIADQIVKKIEKEIKTKN---KKAMIKPFQIKNNMFLFINCLV 404 Query: 325 QDPQFAGQTKERLSSRQCAAFVSG-VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA 383 ++P F QTKE+L++R V D FI + + + + ++A +A + ++ Sbjct: 405 ENPAFTSQTKEQLTTRASQFGGKKTEVPDDFIKKILR-TGIVDAILDIAAMNADKALKKN 463 Query: 384 KKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPL 440 + ++T P L ++ + L L EGDSA A R+Y + PL Sbjct: 464 DGSRKNRITGYPKLED-ANKAGTKEGYKCTLILTEGDSASSLAVAGLAVVGRDYYGVYPL 522 Query: 441 KGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS----DDLSQLRYGKICILADADSDGL 496 +GK+LN E S+D+++ + E+ I +G ++++ LRYG I I+ D D DG Sbjct: 523 RGKMLNVREASADQIMKNAEIQAIKQIMGFQHKKNYTPENINSLRYGHIMIMTDQDHDGS 582 Query: 497 HIATLLCALFVKHFRALVK-HGHVYVALPPLYRID-----LGKEVYYALTEEEKEGVLEQ 550 HI L+ F L+K + + P+ ++ ++V + E E EQ Sbjct: 583 HIKGLIINFLESSFPGLLKVPNFLLEFITPIVKVTITSGPEKRKVIPFYSMPEYEAWREQ 642 Query: 551 LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKK 610 + +KGLG ++RE + + D D +D+ +KK Sbjct: 643 NTES---FKQKYYKGLGTSLAEEMREYFSQLDKHMKTFHALQDVD----PGFIDLAFSKK 695 Query: 611 RSEDRRNWLQEKGDMAEIE 629 +++DR+ WL+ ++ Sbjct: 696 KADDRKEWLRGFEPGVHLD 714 >UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurelia RepID=A0C0L0_PARTE Length = 1274 Score = 511 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 134/668 (20%), Positives = 252/668 (37%), Gaps = 60/668 (8%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT------------------------RPNHLG 36 M Q + + +T +E + +RP Y + + Sbjct: 1 MRQKTIEEQYKKMTHIEHILQRPDTYIGSIQRTSEQMWIIQNGKMIQKEIEYVPGFFKIF 60 Query: 37 QEVIDNSVDEALAG----HAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILC 92 E++ N+ D + V + + + +DG +PV+IH E + ELI Sbjct: 61 DEILVNAADNLQRDTRQHKQSYIKVDIG--NEITIKNDGLPIPVEIHKEYQIYVPELIFG 118 Query: 93 RLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQV 152 G F + + GG +G G + N S + V + + + N + + Sbjct: 119 VFLTGSNFDDSEKRVVGGRNGYGAKLTNVYSTEFTLEVCDGNNYFKLVWNNNMSNKQIPT 178 Query: 153 VGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVE-ITFKDEINNTEQ 211 + K++ S+ + PD F +L + G+ +N+ + Sbjct: 179 IKQL-KKDPYVSISYKPDYKRFGMKEIEADTQA-LLTRRVYDLAGIYGSKINVYLNDEKI 236 Query: 212 RWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLI 271 + + Y+ LP + I F D W ++ + S+VN I Sbjct: 237 KI---NSFQKYVDLY------LPTEGAIKIFDKDMTTPRWEVVVSYSPTQFQHVSFVNAI 287 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T +GGTHVN + ++ ++ N + +++ I ++ + +P F Sbjct: 288 YTAKGGTHVNYVTDKIIQEIQNEMN-NNKKYKSIEVQKYQIKQSLWVFINCLIDNPTFDS 346 Query: 332 QTKERLSSRQCAAFV----SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV 387 QTKE ++++ V + F L + E + + A + A ++ K Sbjct: 347 QTKENMTTKVSEFGGSSEEKFKVTEKFSKALIK-TDIIETIFQQAKAKADAKLNKQLKGT 405 Query: 388 RKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKI 444 + G D ++ L L EGDSA A D R+ + PLKGK+ Sbjct: 406 KTGRLHGIEKLDDANDAGKKNSELCTLILTEGDSAKALAMAGIDIVGRDRYGVFPLKGKL 465 Query: 445 LNTWEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLL 502 LN E S ++L ++E+ ++ IG+ + DL LRYG + I+ D D DG HI L+ Sbjct: 466 LNVREASLKQILQNEEIENLIKIIGLQKERQYTDLKSLRYGSVMIMTDQDIDGSHIKGLI 525 Query: 503 CALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQ 561 + +LVK G + + PL + G + T ++ ++ ++ Sbjct: 526 INFIHHFWPSLVKYSGFLKEFVTPLIKATKGNQTIPFFTVQDFNKFAQE--EDIKNWKIK 583 Query: 562 RFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQE 621 +KGLG + + +E + T + D D+ +D+ KK++ DR+ WL + Sbjct: 584 YYKGLGTSDDQEAQEYFKNLRTHTIQF----RYDGDDDDSSIDLCFNKKKANDRKQWLAQ 639 Query: 622 KGDMAEIE 629 ++ Sbjct: 640 YNHDLYVD 647 >UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2V5K5_NAEGR Length = 1135 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 130/664 (19%), Positives = 252/664 (37%), Gaps = 53/664 (7%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTR-------------------------PNHLGQEVID 41 + T +E V RP Y +T + E++ Sbjct: 11 EQQYQKKTPIEHVLERPDTYVGSTERMKKKLFCLDSVNNIKLKEVDFIPALYRIIDEILV 70 Query: 42 NSVDEALA--GHAKRVDVILHA-DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+VD H + V + + + ++G+ +PV++H E + EL+ L G Sbjct: 71 NAVDNHHRKGTHTNELRVTIDEAKNWIHIRNNGKSVPVEMHKIEKIYVPELVFGNLLTGS 130 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD-GQVYNIAFENGEKVQDLQ-VVGTC 156 F + +F+GG +G G + N S + + G Y ++ +V Sbjct: 131 NFDDNEVKFTGGRNGYGAKLANIFSTDFTIEIMDHKGTHYIQNWKKNMSQISTPTIVENK 190 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVS-RLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY 215 K V F PD F S + + +LK + +N+ + Sbjct: 191 QKTEPYIQVSFHPDFKKFQSTGLNKELNMIDLLKRRIYDLSACNPKLNVYLNDKKVEV-- 248 Query: 216 QDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQ 275 D +Y+ + + + + A+ G E S+VN I T+Q Sbjct: 249 -DNFKEYVKLFYQNNSSGEHPEKMFVHKHICDGWEIAIG-ASVGEEFNQISFVNSIATVQ 306 Query: 276 GGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 GG+HVN + L + E+ + + +S + + ++ +++P F QTKE Sbjct: 307 GGSHVNFVLNQLSTKISEYI-AKTYTDLQLTISPYMVRNHITLFINSLIENPTFDSQTKE 365 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGP 395 L+++ + V+ + I + + + + A K KL Sbjct: 366 TLTTKSISFAQKVVISNDLINSIANHTPIIDNIIAFANYKQSSASSKKFKKRESKLL--I 423 Query: 396 ALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSS 452 L L EGDSA A R+ + PLKGK+LN E S+ Sbjct: 424 PKLDDANLAGTNRSMECVLILTEGDSAKALAISGLSVVGRDRFGVFPLKGKLLNVREASA 483 Query: 453 DEVLASQEVHDISVAIGIDPDSDD------LSQLRYGKICILADADSDGLHIATLLCALF 506 D++ +QE+ ++ +G+D S +LRYGK+ ++ D D DG HI LL + Sbjct: 484 DQIRDNQEIQNLKKILGLDDVSKTDSFEELTKRLRYGKVMLMCDQDHDGSHIKGLLLNMI 543 Query: 507 VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK-RKKGKPNVQRFKG 565 + L+++ V + P+ ++ G +V + E + ++ +K + N + +KG Sbjct: 544 HFFYPELLRNNFVDEFITPIIKVSKGSDVKSFFSIPEFQNWWTKVPENEKNRWNQKYYKG 603 Query: 566 LGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 LG + + ++ + + + +DD + +++ +K + R++W+ D Sbjct: 604 LGTNSSKEAKDYFSNLKRHV---IALQYDDDSEPN--IELAFSKDLANARKSWVASLKDG 658 Query: 626 AEIE 629 ++ Sbjct: 659 TFLD 662 >UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2K9_PHATR Length = 1165 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 151/693 (21%), Positives = 246/693 (35%), Gaps = 92/693 (13%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTRPNH------------------------LGQEVIDN 42 D T LE V RP MY + + E++ N Sbjct: 2 EDQYSRKTPLEHVLLRPSMYVGSNEKAQPIACWVPDPIPTPPTEELLMKTTSVFDEILVN 61 Query: 43 SVDEALAGH--AKRVDVILHA-----DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 95 + D R+DVI+ D + V +DG+G+PV +H +EG+ E++ L Sbjct: 62 AADNLQRHPDSCTRIDVIIDPGSDNRDPFIRVRNDGKGIPVQVHQKEGMYVPEMLFGHLL 121 Query: 96 AGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVV 153 G F + + +GG HG G + N SK V R Y + + + Sbjct: 122 TGSNFDDNEKRLTGGRHGFGAKLTNIFSKSFTVETLDSRKRLKYRQTWSSNMTNASSPEI 181 Query: 154 GTCGKRNT-GTSVHFWPDETFFDSP----RFSVSRLTHVLKAKAVLCPGVEITFKDEINN 208 T T V F PD + S + + + + +N Sbjct: 182 VEVPADATDYTCVSFVPDVARLTNDASALSISKEDYALMCRRVLDVAGCSAGRLRVTLNG 241 Query: 209 TEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYV 268 + DY P + V L E G S+V Sbjct: 242 VDVTM---GSFPDYARLYRKQDSL----PVCFDAINSRWTVGVGL---SETGSFEMVSFV 291 Query: 269 NLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKL----SAEDIWDRCAYVLSVKM 324 N + T +GGTHVN + Q ++ ++E E +L S I ++ + Sbjct: 292 NGMATSRGGTHVNSILQQVIKKIQEKIE-----KTDPELVQMASQGVIRRHLFVSVAALI 346 Query: 325 QDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAEL-LAEMAISSAQRRMRAA 383 ++P F Q KE L+S S + ++FI + Q+ + + E +AQ R +A Sbjct: 347 ENPTFDSQMKECLTSSPADFGSSFSLSESFIKSVLQSEEEGGPGIVEEIRRAAQSRQQAT 406 Query: 384 KKVV-----RKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQ 435 V K+ + + L L EGDSA A R Sbjct: 407 LLKVIGGKTSKRQLLSIPKLEDAHHAGTKSGSECTLILTEGDSAKALAVAGLEVIGRARY 466 Query: 436 AIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-----DDLSQLRYGKICILAD 490 + PL+GK+LN E + ++ + EV + IG+D D ++ +LRYGK+ ++ D Sbjct: 467 GVFPLRGKLLNVREAAVSQMAKNAEVTALCAIIGLDFDKTYETIEERRKLRYGKVMLMTD 526 Query: 491 ADSDGLHIATLLCALFVKHFRALVK-------------HGHVYVALPPLYRIDLGKEVY- 536 D+DG HI L+ F + L+K + + PL + Sbjct: 527 QDTDGSHIKGLVMNFFRYFWPNLLKPPVDLQVNDEDETPPFLSSFVTPLLKASKKSSKTG 586 Query: 537 --YALTEEEKEGVLEQLKRKK-GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593 + E + ++ + K V+ +KGLG P + RE N L D Sbjct: 587 TLSFYSMAEYKKWRGSIEAEDFKKWTVKYYKGLGTSTPAEAREYFSAFNDHFRPFLWNSD 646 Query: 594 EDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 D ++DM+ +R+ DRR W+ + D Sbjct: 647 IDG----ELLDMVFDGERAADRRAWILDVYDET 675 >UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_PBCV1 Length = 1061 Score = 497 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 143/654 (21%), Positives = 248/654 (37%), Gaps = 62/654 (9%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTTRPN------------------------HLGQEVIDNS 43 + LT E V RP Y + P + E+I NS Sbjct: 2 SRYQKLTQREHVLARPDTYIGSVAPQTKNEWVYVDGKIIRKDVTYSPALLKIFDEIITNS 61 Query: 44 VDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK 103 D V + ++S+ V +DG +P++ H E ELI L AG F + Sbjct: 62 ADCYNRDKKLTVLKVCIDEKSVSVHNDGCNIPIEKHDVEKCYIPELIFGHLLAGENFDDT 121 Query: 104 NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGT 163 + G +G+G N SK+ +V + + Y ++EN V V TC +++ Sbjct: 122 EQRTGAGRNGIGSKATNIFSKKFDVEICDGKKKYKQSWENNMSVMSKPKVTTCS-KDSYI 180 Query: 164 SVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-QRWCYQDGLNDY 222 + F+PD F F ++ +++ V K +N + +D + Y Sbjct: 181 TTTFFPDFERFGIDSFDDDTMSIMVRRV-YDMAAVLNKVKVMLNGKRLEIKNTEDYFSLY 239 Query: 223 LAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNG 282 + P E D A+ E S+VN + T +GGTHVN Sbjct: 240 VGNKTETKRAFEHTP---------ENWDVAVSCSD---EFTPVSFVNSVVT-RGGTHVNA 286 Query: 283 LRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQC 342 + + + + + R ++ + +P F QTKE L+SR Sbjct: 287 VTDA-----VAKAVVEAAAKKKIVVKPMTVKGRMFVFVNATVVNPTFDSQTKEILTSRNA 341 Query: 343 A-AFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKL 401 VK A + L+ +Q + + Q+ ++ + +++ P L Sbjct: 342 RVTLSDTFVKKAVGVLLDAVIQETNVRTSLV---DQKELKKTDGAKKSRVSGIPKLND-A 397 Query: 402 ADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLAS 458 A L L EGDSA A RE + PL+GK+LN + S + + Sbjct: 398 AWAGTNHSKMCTLILTEGDSAATLAIAGLSVVGRERYGVFPLRGKLLNVRDASVASITKN 457 Query: 459 QEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK- 515 +E+ + +G+ D S LRYG + I+ DAD DG HI+ L+ F F +L++ Sbjct: 458 EEITALKQILGLQTGKVYKDTSSLRYGHVMIMTDADVDGTHISGLVMNFFHSCFPSLLEI 517 Query: 516 HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLR 575 G + + P+ GK+V + + E + + + K ++ +KGLG + + Sbjct: 518 PGFLKKFITPIVVAKKGKDVREFYSLPDYEDWV-KTTKDYSKYQIKYYKGLGTSSSTDAK 576 Query: 576 ETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 + T D + ++D K R+EDR+ W+ +++ Sbjct: 577 HYFSNLKTLMKTFTWTSD-----SGELIDRSFNKTRAEDRKEWMTAYEPGNQLD 625 >UniRef50_A3DC64 DNA topoisomerase (ATP-hydrolyzing) n=11 Tax=Bacteria RepID=A3DC64_CLOTH Length = 661 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 189/657 (28%), Positives = 322/657 (49%), Gaps = 36/657 (5%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y +I+ L G E VR RP + + H E++ NS+DEA G K ++V Sbjct: 9 AERYGNTSIKSLKGAERVRLRPAVIFGSDGIEGCQHSFFEILSNSIDEAREGFGKVIEVT 68 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN---KNYQFSGGLHGVG 115 D+S+ V D GRG+P+D + E EL+ C L+AGGK+ N +NY+FS GL+G+G Sbjct: 69 RFKDRSIMVKDYGRGIPLDYNENEKRYNWELVFCELYAGGKYKNNSGENYEFSLGLNGLG 128 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 S+ ++V V RDG Y++ FE GE V L+ +TGT + + PD F Sbjct: 129 SCATQYSSEYMDVTVFRDGMRYDLHFEKGENVGGLKK-QKWDYESTGTIIKWRPDLEVFT 187 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLP---- 231 + T VL+ +AV+ G++ DE ++ +CY++G+ DY+ E Sbjct: 188 DINIPLEYYTEVLRKQAVVNAGLKFILYDEESDRVFEYCYENGIVDYIKEVSGDKAFTDI 247 Query: 232 TLPEKPFIGNFAGDTEAVDWALL--WLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 E G D + + L E Y N GG ++ + Sbjct: 248 QYYETSTRGRDREDKPEYKLKMQIAFCFNNEVNLLEYYHNSSFLEYGGAPDKAVKNAFVY 307 Query: 290 AMREFCEYRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + +F + + + ++ +DI D V + + QTK+ ++++ ++ Sbjct: 308 VIDKFLKSQGKYNKDESRITFQDIQDSLILVSNSFSTITSYENQTKKSITNKFIQEAMTE 367 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT-----SGPALPGKLAD 403 +K+ ++ +N + E + + + R A K V K K D Sbjct: 368 FLKEKLEVYFIENKVECTKILEQVLVNKRSRETAEKTRVNIKKKLSGNVDISNRVKKFVD 427 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C ++D+N+ E+++VEGDSA GS K ARD E+QAI+P++GKILN + D + ++ + D Sbjct: 428 CRSKDVNKREIYIVEGDSALGSCKLARDAEFQAIIPVRGKILNCLKADYDSIFKNEIIVD 487 Query: 464 ISVAIGIDPD----------SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRAL 513 + +G + + DL+ LR+ KI I DAD DG I TL+ A+ + L Sbjct: 488 LLKVLGCGVEIKSKHNRELSTFDLNNLRWSKIIICTDADVDGYQIRTLILAMLYRLVPTL 547 Query: 514 VKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQ 573 ++ G V++A PL+ I + Y+A T++EK ++ +L KGK + R KGLGE +P Sbjct: 548 IQVGKVFIAESPLFEIRTKDKTYFAYTDKEKNEIVSKL---KGKYTILRSKGLGENDPDM 604 Query: 574 LRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIEV 630 + +TT++P TRRL+Q+ +D ++T+ D+ L R+++++E G +++ Sbjct: 605 MWQTTMNPETRRLIQVV--PDDIKKTEEFFDLFLGDNL-PGRKSYIEEHGH-KYLDM 657 >UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C981_THAPS Length = 1179 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 135/689 (19%), Positives = 250/689 (36%), Gaps = 78/689 (11%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTTR--------------------------PNHLGQEVI 40 D T LE + RP MY T + E++ Sbjct: 4 EDTYSRKTPLEHILLRPSMYIGPTEHADPKSCSSTNSPWTMQRQELSYVPALLKIFDEIL 63 Query: 41 DNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 N+ D L +D + + ++G+ +P+ IH +E + EL+ L G F Sbjct: 64 VNASDNRLRHPGSCNHFPSSSDPYISITNNGKSIPIQIHRKENMYIPELLFGHLLTGSNF 123 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG------QVYNIAFENGEKVQDLQVVG 154 ++ + +GG HG G + N SK+ V + + Y +E+ V V Sbjct: 124 NDDQKRLTGGRHGYGAKLTNVFSKQFVVEIGDGHSSKGKIKTYKQVWEDNMSVCHEAEVV 183 Query: 155 TCGKRN-------TGTSVHFWPDETFFD---SPRFSVSRLTHVLKAKAVLCPGVE-ITFK 203 + K++ T + F PD ++K + V G Sbjct: 184 SRDKKDADGKGNLDYTRISFIPDLARLTGDRKTEMLPEEEYQLMKRRVVDIAGCSGGKLT 243 Query: 204 DEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELL 263 +N E G DY + P + + + A+ Sbjct: 244 VTLNGEEISVS---GFEDYANLYRQPESSATPLPPMV-YHKLNSRWEVAVGLSETKSLES 299 Query: 264 TESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN-------ILPRGVKLSAEDIWDRC 316 S+VN + T +GGTHV+ L + + + + + + + +S + Sbjct: 300 I-SFVNGMNTSRGGTHVDALARQISQYIADHINNKMARQLDNLQSGQPISVSVRMVRRHL 358 Query: 317 AYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA 376 ++ +++P F Q KE L+S + ++F+ L E + MA+ + Sbjct: 359 FLCVNCLIENPSFDSQMKECLTSNPDNFGSHFELSNSFLRKLV-GPGIVEEVLRMAMGAQ 417 Query: 377 QRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL---NRTELFLVEGDSAGGSAKQAR--- 430 Q M K K+ + D+ N L L EGDSA A Sbjct: 418 QVNMARLLKEQTKRQVLSIPKLEDANLAGSTDIGTENPCTLILTEGDSAKALAVAGLEVV 477 Query: 431 DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS-----DDLSQLRYGKI 485 R++ + PL+GK +N V+ ++ + E+ + +G+ + + +LRYG + Sbjct: 478 GRDHYGVFPLRGKFMNVRNVTVKQLATNAELKAMCAILGLQFEKSYDTAKERQELRYGHV 537 Query: 486 CILADADSDGLHIATLLCALFVKHFRALVK---HGHVYVALPPLY---RIDLGKEVYYAL 539 ++ D D+DG HI L+ +F + AL+K + + + PL + K+ Sbjct: 538 MLMTDQDADGSHIKGLIMNMFRFFWPALLKPPSRPFMSMFITPLLKATKKGKKKDSISFF 597 Query: 540 TEEEKEGVLE--QLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQ 597 + E E + + + K V+ +KGLG P + ++ L +++D Sbjct: 598 SVAEYNSWRESLEDEDEISKWTVKYYKGLGTSTPTEAKDYFLSFVRHYRPFKWQSEKND- 656 Query: 598 RTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 +DM K R+ DR++W+ + D Sbjct: 657 --GERIDMAFEKDRANDRKDWILTEYDEK 683 >UniRef50_Q9FAX1 DNA gyrase subunit B (Fragment) n=60 Tax=Bacteria RepID=GYRB_FLEEL Length = 478 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 162/481 (33%), Positives = 268/481 (55%), Gaps = 21/481 (4%) Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN 160 Y+ SGGLHGVG+S VNALS + V R+G+V+ + G ++VVG + Sbjct: 1 DKDTYKVSGGLHGVGVSCVNALSSLLVATVHREGKVFQQKYSTGNPQGAVEVVGQSDR-- 58 Query: 161 TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE------QRWC 214 TGT+++F PD T F + + ++ L+ + L G+ +T D E + + Sbjct: 59 TGTTIYFEPDATIFATTEYKYETVSKRLRELSYLNKGIRLTLTDLRETDEQGRHLYEEFF 118 Query: 215 YQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTM 274 + GL +++ + L P V+ AL++ E + SYVN I T Sbjct: 119 SEGGLKEFVEHLDSTRQPLLPAPIHVEKTDGDIPVEVALIYNNSYSENVF-SYVNNINTH 177 Query: 275 QGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQT 333 +GGTHV+G R+ L ++ + + +L + V+++ +D + V+S+K+ +PQF GQT Sbjct: 178 EGGTHVSGFRRALTRTLKSYADKSGMLEKAKVEITGDDFREGLTAVISIKVAEPQFEGQT 237 Query: 334 KERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI---SSAQRRMRAAKKVVRKK 390 K +L + V V + +L +N + A+L+ + I + Q +A + V RK Sbjct: 238 KTKLGNSDAIGAVDNAVSEILGYYLEENPREAKLIIQKVILAAQARQAARKAREMVQRKN 297 Query: 391 LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV 450 + G +LPGKLADC+ + R EL+LVEGDSAGGSAKQ RDR +QAI+PL+GKILN + Sbjct: 298 VMGGTSLPGKLADCSDTNPERCELYLVEGDSAGGSAKQGRDRSFQAILPLRGKILNVEKA 357 Query: 451 SSDEVLASQEVHDISVAIGIDPDSD------DLSQLRYGKICILADADSDGLHIATLLCA 504 ++ ++E+ ++ A+G+ ++ +L++LRY KI I+ DAD DG HI TL+ Sbjct: 358 QEYKIYDNEEIKNMITAMGVTFGTEEDSKALNLTKLRYHKIIIMTDADVDGSHIRTLILT 417 Query: 505 LFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGK--PNVQR 562 F ++ R L++ G++YVALPPLY + GKE YA ++ E++ ++ ++ + + +QR Sbjct: 418 FFFRYMRELIEQGYLYVALPPLYIVKKGKEERYAWSDAERDAIIREIAPEGKEDSVGIQR 477 Query: 563 F 563 + Sbjct: 478 Y 478 >UniRef50_A6TSS9 DNA gyrase, subunit B domain protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSS9_ALKMQ Length = 680 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 194/681 (28%), Positives = 321/681 (47%), Gaps = 59/681 (8%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDT---TRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Q Y ++I LT +E VR RP + + T H E + NSVDEA G K + V Sbjct: 6 KQEYGNESISSLTEIEKVRLRPQVIFGSDGITGSRHTVDETVANSVDEAKEGFGKLIKVK 65 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS---NKNYQFSGGLHGVG 115 D+S+ V D RG+PV+ + +E EL+ C L+AGGK++ ++Y++S GL+G+G Sbjct: 66 RFKDRSISVQDFARGIPVEFNSKENKYNWELVFCTLYAGGKYNTNSGESYEYSKGLNGLG 125 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 + S+ ++V VRRDG Y + FE GE + LQ C +TGT++ + PD F Sbjct: 126 TTATQFASEYMDVLVRRDGYEYTLRFEKGENIGGLQK-KKCDYESTGTTITWKPDLDVFT 184 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLP- 234 + +LK +A++ G+ DE + + Y+ G+ DY+ E G Sbjct: 185 DINIPLEFYQELLKRQAIVNKGITFELYDEASEENFTYYYEKGIVDYIEEINGGKELSSV 244 Query: 235 -----EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 E V + + E Y N GG ++ L Sbjct: 245 QYIELETKGRDRADKPEYKVKAEVAFAFNNHASHIEYYHNSSYLEYGGAPDKAVKSAFLS 304 Query: 290 AMREFCEYRNILPRGVKLS-AEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 A+ ++ + N+ + K + DI D + + F QTK +S+ + ++ Sbjct: 305 AIEQYLKNNNLYKKDEKRAIFADIEDSLVLISNSYSTLTSFENQTKRAISNVFIQSALTD 364 Query: 349 VVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVR-KKLTSGPA----LPGKLAD 403 +K+ ++ +N A+ +A I + + R A K + KK P+ K D Sbjct: 365 FLKEKLQIYFIENKVEADKIANQIIINKRSRESAEKTRINVKKKLESPSNFANKVAKFVD 424 Query: 404 CTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 C +D ++ EL++VEGDSA GS KQ RD E+QAIMP++GKILN + D + + D Sbjct: 425 CKTKDKSKRELYIVEGDSAMGSTKQGRDSEFQAIMPVRGKILNCLKAKLDNIFNDSVIVD 484 Query: 464 ISVAIGIDPD----------SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRAL 513 + + + + +L +L + K+ I DAD DG I TL+ A+ + L Sbjct: 485 LLKVLSCGIEIKSKNNTDLYTFELDKLNWDKVIICTDADVDGYQIRTLILAMLYRLVPTL 544 Query: 514 VKHGHVYVALPPLYRI--------------------DLGKE--VYYALTEEEKEGVLEQL 551 ++ G VY+A PL+ I + G + + ++++++ V+ +L Sbjct: 545 LREGKVYIAETPLFEIISTTLPKLTDKQKDGITFVENKGDKNYSIFVYSDQQRDFVVSKL 604 Query: 552 KRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKR 611 KGK +QR KGLGE P + +TT++P TR+L+Q+T+ D Q+ D + D+LL Sbjct: 605 ---KGKYAIQRSKGLGENEPEMMWQTTMNPQTRKLIQVTMS--DAQKADDVFDLLLGNNL 659 Query: 612 SEDRRNWLQEKGD--MAEIEV 630 E R+ + E G + +I+V Sbjct: 660 -EGRKVHIAENGHKYLEQIDV 679 >UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginalis RepID=Q6RCM1_TRIVA Length = 1458 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 140/673 (20%), Positives = 259/673 (38%), Gaps = 72/673 (10%) Query: 6 NADAIEVLTGLEPVRRRPGMYTDTT-------------------------RPNHLGQEVI 40 + + LT E V RP Y + + E++ Sbjct: 13 SDEQYVKLTHREHVLTRPDSYIGSIEPRECKMWVCNEDGKFEFREISYVPGLYKIFDEIL 72 Query: 41 DNSVDEALAGH-AKRVDVILHA-DQSLEVIDDGRGMPVDI--HPEEGV--PAVELILCRL 94 N+ D + + + V +DG+G+ P + E I +L Sbjct: 73 VNAADNKQRDPPLTTIKGEVDPAQNRISVWNDGKGISTQKQFSPNDNCEYYIPEFIFSQL 132 Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR--RDGQVYNIAFENGEKVQDLQV 152 +++K + +GG +G G + N SK+ +N+ +G Y + Sbjct: 133 LTSSNYNDKQEKVTGGRNGYGAKLANIFSKKFHINIYNADEGINYQQTITDNMTNIQPPK 192 Query: 153 VGTCGKRNTGTSVHFWPDETFF---DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT 209 + + + T + FWPD F + V + + A + P V+I + Sbjct: 193 LKNGKGKGSYTEISFWPDLERFNLQTITKDHVDLIRRRVYDLADILPKVKIFWNGNQVPI 252 Query: 210 EQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGG-ELLTESYV 268 ++ ++D YL E V KP + + W + P E S+V Sbjct: 253 KK---WEDYCKVYLKEDV--------KPLVCEVKNEK-GYTWKIGVAPSKSREFQQISFV 300 Query: 269 NLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQ 328 N + T GGTHV+ + + + ++ + N V+ + + + + +P Sbjct: 301 NCVATSNGGTHVDVVVNQITKYITDYLK--NRRSGKVETKPSVVKNFLYVFVDSLVINPS 358 Query: 329 FAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVR 388 F QTKERL+ Q + D F+ + + L+ E A QR++ K + Sbjct: 359 FDSQTKERLTLDQKKLKDDCKLPDNFLDKILK-TDIVALVTEYANFKEQRKVANMKGTKK 417 Query: 389 KKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKIL 445 +L + + L L EGDSA +A R+Y + PL+GK+L Sbjct: 418 GRL--IINKLEDANMAGKAESLKCTLILTEGDSAKATAVTGLATIGRDYYGVFPLRGKLL 475 Query: 446 NTWEVSSDEVLASQEVHDISVAIGIDP-----DSDDLSQLRYGKICILADADSDGLHIAT 500 NT ++S+ ++ + E+ +I +G+DP + D + +LRYG I I+AD D DG HI Sbjct: 476 NTRDISAKKLSENDEIQNIIKIMGLDPMEKYENDDSMKRLRYGSIMIMADQDVDGSHIKG 535 Query: 501 LLCALFVKHFRALVKH-GHVYVALPPLYRIDLGKEV---YYALTEEEKEGVLEQLKRKKG 556 L+ + L+K + + P+ ++ G T E KG Sbjct: 536 LIINFVHSMWPNLLKKRNFITEFITPIVKVTKGNNKKGAISFFTIPEFSQWKAANNNGKG 595 Query: 557 KPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRR 616 ++ +KGL + +E + + + V + ++ D + +++ AKKR++DR+ Sbjct: 596 -YKMKYYKGLATSTAEEAKEYFSNISKHKKVFIYTNEND----EERINLAFAKKRADDRK 650 Query: 617 NWLQE-KGDMAEI 628 NWL + + + Sbjct: 651 NWLAQLDANETYL 663 >UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycodnaviridae RepID=C7U0P4_9PHYC Length = 1072 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 127/663 (19%), Positives = 245/663 (36%), Gaps = 70/663 (10%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTTR--------------------------PNHLGQEVID 41 ++++ LT +E V +RP Y + E++ Sbjct: 3 ESVQKLTHIEHVLKRPDSYVGPVEIGCEPYWIFQKTDNQFKKKSLNYSPALLKIFDEILV 62 Query: 42 NSVDEALAGH--AKRVDVILHAD-QSLEVIDDGR--GMPVDIHPEEGVPAVELILCRLHA 96 N++D + + + ++ + ++G G+ V +H +EG+ EL L Sbjct: 63 NAIDRNSLHPKSCTLISAGIDKETGAVTIENNGPLGGVGVRMHEKEGIWNPELTFGHLLT 122 Query: 97 GGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFENGEKVQDLQVVG 154 + + + GG +G G + N S + ++ Q Y + N V + Sbjct: 123 STNYDDNKKRIVGGRNGYGAKLTNIYSSEFSIVIKDGETKQCYTQKWNNNMTVCHPPKIT 182 Query: 155 TCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWC 214 + S+ F PD F + + K K + Sbjct: 183 KHSASTSSVSITFIPDWKRFGMNKMDNNIYKIFEKRVWDANICTTPNCKVKFQGEALP-- 240 Query: 215 YQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTM 274 + Y + W++ P L S+VN I T Sbjct: 241 -KTSFEAYAKM-----------HEGVSEVSSVTTDRWSVCIGPSENGLEQVSFVNGICTT 288 Query: 275 QGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK 334 +GGTHV+ + + + + + +KL + + + + +++P F+ Q K Sbjct: 289 KGGTHVDHVASYIASGIIDEMAKK------IKLKPQQVKNTFNIFVKATLENPTFSSQVK 342 Query: 335 ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSG 394 +S+ F+ + E L ++ + ++ + K+T Sbjct: 343 SECTSKAQDFGSKFEPPKNFVKNALK-TGIQEELTALSKFKEMKELKKTDGARKSKITGI 401 Query: 395 PALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVS 451 P L + L + EGDSA A R++ + PL+GK N + S Sbjct: 402 PKL-DDANKAGTAQSGKCTLIVTEGDSAKTLAVAGLSVVGRDHYGVFPLRGKCKNVRDAS 460 Query: 452 SDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALFVKH 509 ++ ++QE +D+ +G+ D D+S+LRYG++ I+ DAD+DG HI L+ + Sbjct: 461 VAQLTSNQEFNDLKKILGLQQGKDYQDVSELRYGRLMIMTDADNDGSHIKGLILNMIHYF 520 Query: 510 FRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEM 569 + +L+K G V + P+ + G + T+ + ++ +KGLG Sbjct: 521 WPSLLKLGFVVSMVTPIIKASKGTQSKSFYTDSAFRSW---YGNGQPGWKIKYYKGLGTS 577 Query: 570 NPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK--GDMAE 627 + RE +++ LT+ + D TD + + KK+++DR+ WL E D E Sbjct: 578 TSAEAREYF-----KKIQDLTVKFDMDIMTDKSIVLAFDKKKADDRKTWLLESTAKDPKE 632 Query: 628 IEV 630 +EV Sbjct: 633 LEV 635 >UniRef50_Q1NK64 DNA topoisomerase II:ATP-binding region, ATPase-like n=3 Tax=Bacteria RepID=Q1NK64_9DELT Length = 614 Score = 483 bits (1243), Expect = e-135, Method: Composition-based stats. Identities = 187/642 (29%), Positives = 294/642 (45%), Gaps = 61/642 (9%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTD--------TTRPNHLGQEVIDNSVDEALAGHAK 53 + Y+ I+ L+ LE +R RPGMY L +EVIDN VDE + G + Sbjct: 5 SAVYDESKIKTLSSLEHIRMRPGMYIGRLGNGSHPDDGIYILLKEVIDNGVDEFIMGAGR 64 Query: 54 RVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 +D+ L D + + D GRG+P+ VE + ++ G K++ +QFS GL+G Sbjct: 65 AIDIALADDNVVTIRDYGRGIPLGK-------LVECV-SVINTGAKYNTDAFQFSVGLNG 116 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF 173 VG VNA+S R V RDG+ F G V + + GT V F PD Sbjct: 117 VGTKAVNAMSSRFVVTSFRDGEFARAKFARGVLVNEE---SGRSREPNGTLVEFRPDGEM 173 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 F F+ + LK + L G+ + F + + ++GL D LA +G Sbjct: 174 FPEYAFNRDFIRRRLKRYSYLNAGLTLNFDG------ESFYSENGLLDLLASETSGTSLY 227 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 +P V++A GE S+VN T +GGTH++ R+GLL + E Sbjct: 228 --EPIYHREK----TVEFAFSHTDGYGESYF-SFVNGTYTAEGGTHLSAFREGLLKGVNE 280 Query: 294 FCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 + + D+ + ++VK+++P F QTK +L + + V++A Sbjct: 281 YAGKK--------FDGADVREGVVGAVAVKVREPIFESQTKNKLGNADIRGEIVTAVREA 332 Query: 354 FILWLNQNVQAAELLAEMAISSAQRRM------RAAKKVVRKKLTSGPALPG-KLADCTA 406 +L +N AEL+ + SA+ R + AK RK P L K Sbjct: 333 VSAFLYKNTDIAELVIDKIQQSARVRKELQHVRKEAKAKARKVALKIPQLKDCKYHPAPG 392 Query: 407 QDL---NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHD 463 + +FL EG SA GS ARD QA+ LKGK LN + + + E+++ Sbjct: 393 KPSPAGRENMVFLTEGQSASGSIVSARDPMTQAVFSLKGKPLNVFGQPMALLYKNDEMYN 452 Query: 464 ISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 I A+ + + + +LR+ KI I DAD DGLHI LL F+ +F +LVK GHVY+ Sbjct: 453 IMRALDV---EESIGRLRFDKIIIATDADVDGLHIRNLLLTFFLHYFESLVKRGHVYILE 509 Query: 524 PPLYRIDLGKEVYYALTEEEK---EGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLD 580 P+YR+ ++ +Y TE+E+ + L + + V RFKGLGE++P + ++ Sbjct: 510 TPIYRVRNKEQTFYCYTEKERREADQKLAGRGKTRRPVEVTRFKGLGEISPKEFKQFIG- 568 Query: 581 PNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 + RL Q+ ID +++ + K + RR ++ Sbjct: 569 -SEMRLQQVDIDT--LSEVPRVLEFYMGKN-TPSRREYIMSH 606 >UniRef50_Q9FAX2 DNA gyrase subunit B (Fragment) n=166 Tax=root RepID=GYRB_FLEJA Length = 481 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 160/484 (33%), Positives = 256/484 (52%), Gaps = 24/484 (4%) Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN 160 Y+ SGGLHGVG+S VNALS + V V R+G+++ + G ++ +G Sbjct: 1 DKNTYKVSGGLHGVGVSCVNALSTVLHVTVHREGKIFEQEYHRGVPQYAVREIGATTDTG 60 Query: 161 TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE------QRWC 214 T + HF PD F ++ L L+ A L + IT DE E + + Sbjct: 61 T--TTHFKPDGEIFTETSYNREILAGRLRELAYLNRKIRITLTDEREKDEQGNVLSEPFY 118 Query: 215 YQDGLNDYLAEAVNG--LPTLPEKPFIGNFAG--DTEAVDWALLWLPEGGELLTESYVNL 270 + G+ +++ +L P AV+ +L + E SYVN Sbjct: 119 SEGGIMEFVQMLDRNGRRNSLLPAPIFIEAHDAPSNVAVEVSLQYNDSFSE-NIFSYVNN 177 Query: 271 IPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQF 329 I T++GGTHV G R+ + + + + + + ++++ +D + + ++SVK+ +PQF Sbjct: 178 INTIEGGTHVAGFRRAITRVFKTYGDRNKLFEKSKIEVTGDDFREGLSAIVSVKVPEPQF 237 Query: 330 AGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---V 386 GQTK +L + V V D +L ++ + A + + +AQ R A K V Sbjct: 238 EGQTKTKLGNSDVMGVVDSAVADVLNAYLEEHPKEARTVINKVVLAAQAREAARKARQLV 297 Query: 387 VRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN 446 RK + +G LPGKLADC+ D + EL+LVEGDSAGG+AKQ R+R +QAI+PL+GKILN Sbjct: 298 QRKSVLTGSGLPGKLADCSENDPEKCELYLVEGDSAGGTAKQGRNRAFQAILPLRGKILN 357 Query: 447 TWEVSSDEVLASQEVHDISVAIGIDPDSD------DLSQLRYGKICILADADSDGLHIAT 500 + ++ ++E+ +I A+G+ ++ +LS+LRY K+ I+ DAD DG HIAT Sbjct: 358 VEKAMEHKIYENEEIKNIFTALGVTIGTEEDDKALNLSKLRYHKLIIMTDADVDGSHIAT 417 Query: 501 LLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQ-LKRKKGKPN 559 L+ ++ +ALV+ G+VY+A PPLY + GKE YA TEE+++ + K+ Sbjct: 418 LILTFVFRYMKALVEQGYVYIAQPPLYLVKKGKEQIYAWTEEQRKAAVATLAGGKEDSVT 477 Query: 560 VQRF 563 +QR+ Sbjct: 478 IQRY 481 >UniRef50_B9U3G6 DNA topoisomerase 2 (Fragment) n=1 Tax=Pleurotus djamor RepID=B9U3G6_PLEDJ Length = 735 Score = 474 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 112/571 (19%), Positives = 216/571 (37%), Gaps = 61/571 (10%) Query: 111 LHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW 168 +G G + N S + + + + Y+ + + G+ T V F Sbjct: 1 RNGFGAKLANIYSHEFTIETADKTNEKKYSQTWTKNMTQVGKAKITKNGRGEEWTKVTFK 60 Query: 169 PDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-QRWCYQDGLNDYLAEAV 227 PD F +L+ + G K +N+ + ++ + YL A Sbjct: 61 PDLARFGMTHIDPDT-AGLLRKRVYDMAGTVKDVKVYLNDERLKVKNFKQYVEMYLDSAA 119 Query: 228 NGLP--TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQ 285 + + + + W + + G S+ N I T++GGTHVN + Sbjct: 120 ADAKENSGGAAQAKASIIYEQISPRWEVGFATSDGTFQQVSFANSISTIKGGTHVNYISD 179 Query: 286 GLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAF 345 L + +N +G + I + ++ +++P F QTKE L+ Sbjct: 180 QLAKNLIAAITKKN---KGAAVKPAQIKNHMWIFVNALIENPTFDSQTKETLTLPASKFG 236 Query: 346 VSGVVKDAFILW---------------LNQNVQAAELLAEMAISSAQRRMRAAKKVVRKK 390 + + F+ L Q + + A A ++++ R + Sbjct: 237 SRPTLSEEFMKKGCVPIVLVVLSSYRLLVQKSSIIDQVLNWAKFKADQQIKKTDGSKRTR 296 Query: 391 --------------LTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DRE 433 + +G A + + + L L EGDSA A R+ Sbjct: 297 YFHSHSTEFVLNSIIVTGMAKLSDANNAGTKHAEKCTLILTEGDSAKSLAVAGLAVVGRD 356 Query: 434 YQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADA 491 + PL+GK+LN E D+V+ ++E+ +I +G+ + + ++S LRYG++ I+ D Sbjct: 357 NFGVFPLRGKLLNVREARHDQVMKNEEIQNIKKIMGLQHNKEYSNVSSLRYGRLMIMTDQ 416 Query: 492 DSDGLHIATLLCALFVKHFRALVKHG-HVYVALPPLYR------------IDLGKEVYYA 538 D DG HI LL + +L+K + + P+ R + G + Sbjct: 417 DHDGSHIKGLLINFLDHFYPSLLKIPEFLVEFVTPIVRVSIFHQCQIPPHVTKGSQRKNF 476 Query: 539 LTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQR 598 T E E +E K K + +KGLG + RE + + T++DE+ Sbjct: 477 FTIPEYEQWIESTPDSK-KWTAKYYKGLGTSSDADAREYFSKMSKHMIPFATMEDEERP- 534 Query: 599 TDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++D+ +KK+++DR++WL++ ++ Sbjct: 535 ---LIDLAFSKKKADDRKDWLRQFKPGTYLD 562 >UniRef50_Q18GY2 DNA gyrase subunit B n=10 Tax=cellular organisms RepID=Q18GY2_HALWD Length = 852 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 164/430 (38%), Positives = 238/430 (55%), Gaps = 9/430 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y A I+VL GLE VR+RP MY +T +HL EV+DN++DEALAGH ++DV L Sbjct: 5 TEYGAGDIQVLEGLEAVRKRPAMYIGSTDSRGLHHLVYEVVDNAIDEALAGHCDQIDVTL 64 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 119 H D S+ V D+GRG+PVD H + +PAVE+I+ LHAGGKF NK+YQ SGGLHGVG+SVV Sbjct: 65 HEDGSVSVADNGRGIPVDTHEQHDIPAVEVIMTVLHAGGKFDNKSYQVSGGLHGVGVSVV 124 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEKVQD--LQVVGTCGKRNTGTSVHFWPDETFFDSP 177 NALS+ +EV ++RDG ++ FE GE +V TGT++ FWP + F++ Sbjct: 125 NALSRWLEVEIKRDGALWRDRFEYGEPQPGAFERVRDLDPDEETGTTIRFWPSDDIFETT 184 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKP 237 F S L + L+ A L GVEI E ++ ++C+ G+ +++ L + Sbjct: 185 EFEFSTLENRLRELAFLNSGVEICINGETDDINSKFCFNGGIREFVKYLDETKTVLHDSV 244 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297 D V+ AL E + ++ N I T +GGTH+ G + L + ++ Sbjct: 245 VHYQNEQDGIEVEVALQ-ATEELQGSIHAFANNINTREGGTHLTGFKTALTRVINDYGRE 303 Query: 298 RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 N+L L ED+ + V+S+K DPQF GQTK +L + V + + Sbjct: 304 HNLLDGFDSLQGEDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDVRGIVESTTHERLGTY 363 Query: 358 LNQNVQAAELLAE---MAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTEL 414 L +N A+++ A + + +A + RK +LPGKLADC ++D +EL Sbjct: 364 LEENPDVAKVIVRKAVEAAKARKAAKQAEELTRRKSALESTSLPGKLADCQSRDPAESEL 423 Query: 415 FLVEGDSAGG 424 F+VEGDSAGG Sbjct: 424 FIVEGDSAGG 433 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 90/208 (43%), Positives = 125/208 (60%), Gaps = 6/208 (2%) Query: 425 SAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDLSQLRYG 483 SAKQ R+R +QAI+PLKGKILN + D +L + EV + AIG ++ RY Sbjct: 649 SAKQGRERRFQAILPLKGKILNVEKHRLDRILENDEVRALITAIGAGIGDEFNVEDARYN 708 Query: 484 KICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEE 543 ++ IL+DAD DG HI TLL L +H R LV+ G+VY A PPLYRI Y A+T+ E Sbjct: 709 RLIILSDADVDGAHIRTLLLTLLYRHMRPLVEAGYVYAAKPPLYRIRYNGNTYDAMTKSE 768 Query: 544 KEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMM 603 ++ V+ + VQRFKGLGEMNP QL ETT++P R L Q+TI ED D M Sbjct: 769 RDQVISDVCN-GNPTQVQRFKGLGEMNPEQLWETTMNPENRVLKQITI--EDAAAADKMF 825 Query: 604 DMLLAKKRSEDRRNWLQEKGDMAE-IEV 630 +L+ E R+ +++++ AE +++ Sbjct: 826 SVLMG-DAVEPRKEFIKDRATDAEWVDI 852 >UniRef50_B2RL68 DNA topoisomerase IV B subunit n=60 Tax=Bacteria RepID=B2RL68_PORG3 Length = 644 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 190/680 (27%), Positives = 311/680 (45%), Gaps = 93/680 (13%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTD--------TTRPNHLGQEVIDNSVDEALAGHA 52 + Y I+ L E +RRRPGMY L +EV+DNSVDE + G Sbjct: 7 LQTEYIESDIKTLEWDEHIRRRPGMYIGKLGDGSHADDGIYVLLKEVLDNSVDEFVMGAG 66 Query: 53 KRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH 112 K +D+ + + ++ V D GRG+P+ + C+++ GGK +K ++ S GL+ Sbjct: 67 KSIDITI-ENGTVTVRDYGRGIPLGK--------LVDATCKMNTGGKIDSKAFKKSVGLN 117 Query: 113 GVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDET 172 GVGI VNALS V V RDGQ + + E +++ V +GT V F PD++ Sbjct: 118 GVGIKAVNALSTEFVVTVWRDGQTKRVRYSRAELLEETDPVP--SGEPSGTEVRFTPDDS 175 Query: 173 FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPT 232 F + R+ + ++K L G+ + +++ + GL D LAE + G Sbjct: 176 LFRNYRYQEEFVVSMIKNYTFLNTGLSFFYNG------KKFLSRKGLEDLLAENMTGDAL 229 Query: 233 LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 P ++ + + G+ S+VN T QGGTH++ R+ + ++ Sbjct: 230 YPIIHL------SDTDIEIVVTHTQQYGDE-FYSFVNGQNTTQGGTHLSAFREAVARTIK 282 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS-------RQCAAF 345 EF DI A +S+K+++P F QTK +L S F Sbjct: 283 EFYSK--------NFEYSDIRSGMAAAISIKVEEPVFESQTKTKLGSRDMGPDGPTIQKF 334 Query: 346 VSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV--RKKLTSGPALPGKLAD 403 V +K +L+ + + AE + S + R + R++ KL D Sbjct: 335 VGDFLKKELDDYLHIHTETAEEMLRKIQQSERERKAMSGITKLARERAKKSNLHNKKLRD 394 Query: 404 CT-------AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVL 456 CT A++ RT +F+ EG+SA GS RD YQA+ L+GK LN + ++ V Sbjct: 395 CTVHLNDPKAKEPERTSIFITEGNSASGSITTCRDANYQAVFSLRGKPLNCFGLTKKVVY 454 Query: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516 ++E + + A+ I+ L LRY ++ I DAD DG+HI L+ F++ F LV+ Sbjct: 455 ENEEFNLLQAALNIEEG---LDGLRYNRVIIATDADDDGMHIRLLIITFFLQFFPDLVRK 511 Query: 517 GHVYVALPPLYRI---------------DLGKEV-----------YYALTEEEKEGVLEQ 550 GHVYV PL+R+ G++ Y +E EK+ L+Q Sbjct: 512 GHVYVLETPLFRVFLPPESKKQTFGATPKRGRKKQESDMPKPVTDIYCYSEAEKQAALKQ 571 Query: 551 LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKK 610 L + K +V RFKGLGE++P Q ++ +D RL +++ ED + ++ + K Sbjct: 572 LGK---KADVTRFKGLGEISPEQFKD-LIDEENIRLEPVSLKRED--KIKELLTFYMGKN 625 Query: 611 RSEDRRNWLQEKGDMAEIEV 630 SE R+ ++ + + + +V Sbjct: 626 TSE-RQEFIIDN-LVVDEDV 643 >UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NA12_PHYIN Length = 1505 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 122/691 (17%), Positives = 224/691 (32%), Gaps = 122/691 (17%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 + T LE + RP Y + + E+I Sbjct: 99 EQIYQKKTQLEHILLRPDTYVGSIEHVEQSMWVFDDEKQRMVLKKINYVPGLYKIFDEII 158 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + V + + + V ++G+G+P+ +H E V ELI L G Sbjct: 159 VNACDNKQRDKSMNTLKVTIDVEKNEISVWNNGKGIPIVLHKEHKVYVPELIFGHLLTGS 218 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTC 156 F +K + +GG +G G + N S V Q Y FE+ ++ + Sbjct: 219 NFDDKKKKTTGGRNGYGAKLANIFSNEFVVETADSSTKQKYKQVFESNMSKKNPPSITKW 278 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVE-ITFKDEINNTEQRW-C 214 +++ T + F PD F F + + K + GV +N + Sbjct: 279 AQKD-FTCISFKPDLERFKL-DFLNDDIVSLFKKRVYDVAGVSGKGMNVFLNGDKIPIKS 336 Query: 215 YQDGLNDY---------------------------------LAEAVNGLPTLPEKPFIGN 241 + + Y A+ P Sbjct: 337 FPQYVALYPGPRGYEADKDKDDEDAHPDENGDDDDEDYSEDKAKKAKAARAKPSNVTKNG 396 Query: 242 FAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNIL 301 + W + HV+ + + + + +N Sbjct: 397 VIFEKPDERWQVGVGMSEDGFQQ--------------HVSYIVDQITAKLVSVLKKKN-- 440 Query: 302 PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 +G + I + +S + +P F QTKE L++R + + + D F+ L ++ Sbjct: 441 -KGEAVKPNYIKNHMFVYVSALIDNPAFDSQTKETLTTRANSFGSTFNLSDKFLKQLEKS 499 Query: 362 VQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDS 421 ++L+ A R ++ +G L L EGDS Sbjct: 500 GLVEKILSFAAFKQTAELRRKGGSSGKRSRLTGIPKLDDANHAGTAKSKDCTLILTEGDS 559 Query: 422 AGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI--DPDSDDLSQ 479 A +L ++E+ ++ +G+ + Sbjct: 560 AKT------------------------------ILKNEEIQNVVKILGLKYGQKYESTKG 589 Query: 480 LRYGKICILADADSDGLHIATLLCALFVKHFRALV-KHGHVYVALPPLYRIDLGKEVYYA 538 LRYG + I+AD D DG HI L+ L + +L+ G + + P+ + G+ Sbjct: 590 LRYGHLMIMADQDHDGSHIKGLVINLIHHFWPSLLVVDGFLQEFITPIVKCTKGRTKEVF 649 Query: 539 LTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQR 598 T E E E+ + ++ +KGLG + +E D T ++ D D Sbjct: 650 YTMPEYEAWRERT-NQGRGWVIKYYKGLGTSTAAETKEYFSDLQTHQIGFTYDGDGDA-- 706 Query: 599 TDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++DM +KKR EDR++WL+ ++ Sbjct: 707 --DVIDMAFSKKRVEDRKDWLRGYEPGTYVD 735 >UniRef50_D2QHC5 DNA topoisomerase type IIA subunit B region 2 domain protein n=6 Tax=Bacteroidetes RepID=D2QHC5_9SPHI Length = 632 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 187/648 (28%), Positives = 301/648 (46%), Gaps = 67/648 (10%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTD--------TTRPNHLGQEVIDNSVDEALAGHAKRV 55 YN D+I L E +R RPGMY L +E IDN +DE + G K + Sbjct: 10 QYNEDSIRSLDWREHIRLRPGMYIGKLGDGSAADDGIYVLIKETIDNCIDEHVMGFGKVI 69 Query: 56 DVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVG 115 +V + D +EV D GRG+P+ V ++ +++ GGK+ + +Q S GL+GVG Sbjct: 70 EVRV-TDHRVEVRDFGRGIPLGK--------VVEVVSKINTGGKYDSGAFQKSVGLNGVG 120 Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 VNALS V R+G+ F+ GE Q GT + F PD+T F Sbjct: 121 TKAVNALSSYFRVQSFREGKTVWAEFDRGELK---QRGEDATTERNGTLICFEPDDTVFK 177 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPE 235 F L +++ L G+ I+F +Q++ Q+GL D L + Sbjct: 178 HFHFIPQFLENMIWNYCYLNAGLTISFN------KQKYLSQNGLLDLLRDKTKKDEDSLR 231 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 P I D ++ AL + GE S+VN T QGGTH+N L++ +++ +R Sbjct: 232 YPIIHLKGND---LEIALTHGNQYGEE-YYSFVNGQYTTQGGTHLNALKEAVVETVRRHF 287 Query: 296 EYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQ---------CAAFV 346 + DI +S+++Q+P F QTK +L S+ ++FV Sbjct: 288 DKNY--------EVSDIRSSIIAAVSIRVQEPVFESQTKTKLGSQNMSPEPNAQSVSSFV 339 Query: 347 SGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA--KKVVRKKLTSGPALPGKLADC 404 VK+ +L+ N E L + S + R A KK+ + KL DC Sbjct: 340 KDFVKERLDDFLHMNPAVREALKKRIEQSERERKELAGIKKLANDRAKKASLHNKKLRDC 399 Query: 405 TAQ-------DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLA 457 D ++ LF+ EGDSA GS ++R+ + QA+ L+GK LN + ++ V Sbjct: 400 RNHLPDLKADDRYQSTLFITEGDSASGSITKSRNVQSQAVFSLRGKPLNCFGLTKKVVYE 459 Query: 458 SQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHG 517 ++E + + A+ I+ L LRY +I I DAD DG+HI L+ F++ F LV++G Sbjct: 460 NEEFNLLQHALDIEDG---LEGLRYNRIVIATDADVDGMHIRLLMLTFFLQFFPDLVRNG 516 Query: 518 HVYVALPPLYRI---DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQL 574 H+Y+ PL+R+ KE Y +E+EK+ +++L + K + RFKGLGE++P + Sbjct: 517 HLYILETPLFRVRNPKNHKETTYCYSEDEKQKAIDKLTKAAKKVEITRFKGLGEISPDEF 576 Query: 575 RETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 RL + ++ E ++ + K + DR+ ++ + Sbjct: 577 GLFIG--ENMRLEPVIMEKE--TSVPKLLSYYMGKN-TPDRQRFIIDN 619 >UniRef50_B1ZME3 DNA topoisomerase type IIA subunit B region 2 domain protein n=42 Tax=Bacteria RepID=B1ZME3_OPITP Length = 629 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 179/649 (27%), Positives = 306/649 (47%), Gaps = 67/649 (10%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTD--------TTRPNHLGQEVIDNSVDEALAGHA 52 M Q Y +I+ L+ E +R RPGMY L +E IDNS+DE G+ Sbjct: 18 MAQAYTEASIKTLSSTEHIRLRPGMYIGRLGNGAHAEDGIYVLLKESIDNSIDEFTMGYG 77 Query: 53 KRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH 112 +++++ L D+ + V D GRG+P+ +E + ++ G K+ ++ ++ + GL+ Sbjct: 78 RKIEIEL-QDRMVRVRDYGRGIPLGK-------VLECV-SIINTGAKYDSETFKKAVGLN 128 Query: 113 GVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDET 172 GVG VNALS RDGQ + F G+ +D ++ T GT + F PDE Sbjct: 129 GVGQKAVNALSFSYRAQAFRDGQTKLVEFAQGKLRKDHKIAKTT--ERNGTLIEFTPDEA 186 Query: 173 FFD-SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLP 231 F +F + +L A L G+ +TF + + ++GL D L Sbjct: 187 LFGKDFKFRPEFIEDMLWNYAFLNRGLTLTFNG------KAFRSENGLKDLLQ------K 234 Query: 232 TLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAM 291 L +P + E ++ A GE S+VN T GGTH+ R+ L++ + Sbjct: 235 NLSGEPLYPIIHLEGEDMEVAFTHGAHYGEE-YYSFVNGQHTTMGGTHLAAFREALVETV 293 Query: 292 REFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS-------RQCAA 344 R F + A D+ +SV++ +P F QTK +L S Sbjct: 294 RNFFKR--------DYDAADVRQSIDAAVSVRVMEPVFESQTKTKLGSTDIAPGGPSIRD 345 Query: 345 FVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA--KKVVRKKLTSGPALPGKLA 402 F+ V+ + +L++N + A+ L S + R A + + R++ KL Sbjct: 346 FIGKFVQQSLDGYLHKNRETADALRNKIEESERERKELAGIRSLARERAKKASLHNRKLR 405 Query: 403 DCT------AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVL 456 DC + + LF+VEGDSA GS RD + QA+ LKGK LNT+ +S + Sbjct: 406 DCRLHLGDRNERAEESTLFIVEGDSAAGSLTATRDVQTQAVFALKGKPLNTFGLSKKVIY 465 Query: 457 ASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH 516 ++E H + A+ + D + LRY ++ I DAD DG+HI LL + F++ F L+++ Sbjct: 466 ENEEFHLLQSALNV---EDSMDGLRYNRVVIATDADVDGMHIRLLLISFFLQFFPDLIRN 522 Query: 517 GHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRE 576 GH+++ PL+R+ KE Y +EEEK+ +++L + RFKGLGE++ + ++ Sbjct: 523 GHLFILETPLFRVRNKKETIYCYSEEEKQAAMKKLG---ASHEITRFKGLGEISAGEFKD 579 Query: 577 TTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 RL +T+ +D ++ ++ + K + +R++++ + + Sbjct: 580 FIG--EAMRLEPVTLAHLND--SNELLGFFMGKN-TPERQDFIIDNLKV 623 >UniRef50_P77966 Ssp gyrB intein n=45 Tax=cellular organisms RepID=GYRB_SYNY3 Length = 1078 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 170/433 (39%), Positives = 240/433 (55%), Gaps = 11/433 (2%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 T Y AD I+VL GLEPVR+RPGMY +T +HL EV+DN++DEALAG+ +++ Sbjct: 5 TTNYGADQIQVLEGLEPVRKRPGMYIGSTGPKGLHHLVYEVVDNAIDEALAGYCTHIEID 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 ++AD S+ V+D+GRG+P DIHP G A+E +L LHAGGKF Y+ SGGLHGVG+SV Sbjct: 65 INADGSVTVVDNGRGIPTDIHPTTGRSALETVLTVLHAGGKFGGGGYKVSGGLHGVGVSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS-P 177 VNALS+ VEV V R G+ + FE G + L+ +TGT V F PD F Sbjct: 125 VNALSEWVEVKVWRQGKEHFQRFERGNPIGTLEA-TPNEGHSTGTQVSFLPDTQIFKDGI 183 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLNDYLAEAVNGLPTLPE 235 F L LK A L GV ITF D + E+++ Y+ G+ +Y+ L E Sbjct: 184 EFDYHTLASRLKELAYLNAGVRITFGDRRADSLKEEQFYYEGGIREYVTYMTTDKTPLHE 243 Query: 236 KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295 + + + V+ AL W + + N I T+ GGTH+ GL+ L + Sbjct: 244 EIIYTSGEKNDVQVEVALQWCVDAYSDTLLGFANNIRTIDGGTHLEGLKAVLTRTLNSVA 303 Query: 296 EYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 RN L L E+I + V+SVK+ DP+F GQTK +L + + V +V +A Sbjct: 304 RKRNKLKDGDSNLGGENIREGLTGVISVKVPDPEFEGQTKTKLGNTEVRGIVDTLVGEAL 363 Query: 355 ILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNR 411 +L N A+ + E A+ + + A + V RK + LPGKLADC+++D + Sbjct: 364 TEFLEFNPGVADAIIEKAVQAFKAAEAARRARELVRRKSVLESSTLPGKLADCSSKDPSE 423 Query: 412 TELFLVEGDSAGG 424 +E+F+VEGDSAGG Sbjct: 424 SEIFIVEGDSAGG 436 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 79/211 (37%), Positives = 126/211 (59%), Gaps = 9/211 (4%) Query: 425 SAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP--DSDDLSQLRY 482 SAKQ RDR +QAI+PL+GKILN + ++ + E+ + A+G+ D D+S LRY Sbjct: 872 SAKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGDDFDISSLRY 931 Query: 483 GKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEE 542 ++ I+ DAD DG HI TLL F ++ R LV G++Y+A PPLY+++ GK +Y ++ Sbjct: 932 HRVVIMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACPPLYKLERGKNHFYCYSDR 991 Query: 543 EKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAM 602 E + + Q +QRFKGLGEM P QL +TT++P +R + ++ I ED D + Sbjct: 992 ELQEQISQFP-PNANYTIQRFKGLGEMMPQQLWDTTMNPESRTMKRVHI--EDAAEADRI 1048 Query: 603 MDMLLAKKRSEDRRNWLQEKG---DMAEIEV 630 +L+ R RR +++ G D+ ++++ Sbjct: 1049 FTVLMG-DRVAPRREFIETYGTKLDLTDLDI 1078 >UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepID=C9S837_VERA1 Length = 1688 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 119/675 (17%), Positives = 243/675 (36%), Gaps = 113/675 (16%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHL 35 T+ + + LT LE + +RP Y + + Sbjct: 118 TKKTVEETYQKLTQLEHIVKRPDTYIGSVERTEMPMWVYNKETQLMEFRKVTTVPGLYKI 177 Query: 36 GQEVIDNSVD------EALAGHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVE 88 E++ N+ D E+ + V + + + + + Sbjct: 178 FDEILVNAADIKVRREESGEEPVTHIKVNIDREAGQISIEN------------------- 218 Query: 89 LILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQ 148 +G GI V + + +Y + + Sbjct: 219 -----------------------NGKGIP----------VEMHKQHGIY--TWTDNMSKM 243 Query: 149 DLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINN 208 + K + + F PD F L +L + G K +N Sbjct: 244 GKAKIT-SSKSSDFVRITFKPDFKRFSMEGID-DDLEALLYRRVYDMAGTIKGIKVHLNG 301 Query: 209 TEQRWCYQDGLNDYLAEAVNGLPTLPE--KPFIGNFAGDTEAVDWALLWLPEGGELLTES 266 T + G ++ A+A+ E +P + + W + + G S Sbjct: 302 TVVKPSAFKGYSEMYAKAIAKERASEEGGEPKVTVEMDKNDNPRWDVGFTVSDGSFQHIS 361 Query: 267 YVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQD 326 +VN I T GGTHVN + ++ + ++ + + +G L + I + ++ ++++ Sbjct: 362 FVNNIATTSGGTHVNYVADQIVQYLTKYLDKK---KKGHALKPQHIRNHIFVFINCRIEN 418 Query: 327 PQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKV 386 P F QTKE+++++ + V+ +AF+ + A + + A A + M + Sbjct: 419 PSFNSQTKEQMTTKISSFGSKCVLSEAFLKKVA-ASDAIQNIMSFAEKKADKMMAKSDGN 477 Query: 387 VRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGK 443 R ++ + + + + L L EGDSA A R D + + PL+GK Sbjct: 478 RRSRINNAKLV--DANLAGTKRGHECTLILTEGDSAKSLAVAGRAILDPDRIGVFPLRGK 535 Query: 444 ILNTWEVSSDEVLASQEVHDISVAIGIDP--DSDDLSQLRYGKICILADADSDGLHIATL 501 +LN + S +++ +QE+ +I +G+ + D LRYG + I+AD D DG HI L Sbjct: 536 MLNVRDASIEQITKNQEIQNIKQFLGLKHKQNYTDTKGLRYGHLMIMADQDHDGSHIKGL 595 Query: 502 LCALFVKHFRALVK-HGHVYVALPPLYRIDLGK------EVYYALTEEEKEGVLEQLKRK 554 L + +L++ + P+ ++ GK ++ T+ + E E K + Sbjct: 596 LINFLQVQYPSLLQIPDFFREFITPIVKVWQGKNPKNPQKLQAFFTQPQYEEWKEAHKNE 655 Query: 555 KGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSED 614 + + +KGLG + + + + T+ + + D+ +KK+++ Sbjct: 656 ISRWEYKYYKGLGTSSNEDAQVYFTNLDDHLKEFDTMQSSEA----DLFDLAFSKKKADA 711 Query: 615 RRNWLQEKGDMAEIE 629 R+ WL ++ Sbjct: 712 RKEWLGNFVPGTYLD 726 >UniRef50_UPI00016B23A5 DNA gyrase subunit B n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B23A5 Length = 486 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 153/486 (31%), Positives = 244/486 (50%), Gaps = 31/486 (6%) Query: 171 ETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNG 229 T F ++ F + + L+ +A L GV + DE + + ++ G+ Y+ G Sbjct: 1 PTIFKETVNFDYKWVVNYLRHQAYLTKGVYTSVVDERTGERKAFYFEGGIKSYVKNLNIG 60 Query: 230 LPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 L E F + V+ A+ + E + + + N + T GGTH+ G R L Sbjct: 61 KEVLSEDIFYVEKQIEDCMVEIAVQYNDTYVE-VVKPFANNVLTPDGGTHLVGFRTALTR 119 Query: 290 AMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 + ++ N+L + L+ +DI + V+ VK+ DPQF GQTK +L + + +V Sbjct: 120 VINDYARKNNLLKEKEDNLTGDDIREGLTAVILVKLPDPQFEGQTKNKLGNPEMRRYVDQ 179 Query: 349 VVKDAFILWLNQNVQAAELLAEMA---ISSAQRRMRAAKKVVRKKLTSGPALPGKLADCT 405 V+ + F +L +N A+ + A + + A V+RK G LP KL DC+ Sbjct: 180 VMSEYFAYYLEENPATAKKVVGKATLAARARKAARAARDNVIRKGAFEGLNLPSKLTDCS 239 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 +++ ELF+VEG+SA GSAK RD QAI+PL+GK+LNT D++ A+ E+ + Sbjct: 240 SRNRKDCELFIVEGNSAAGSAKDGRDSTIQAILPLRGKVLNTERARFDKMFANAEIVSLI 299 Query: 466 VAIGIDPDS-DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALP 524 A+G+ D+S +RY KI + DAD DG HI+TLL F ++ +++ GHVY+A P Sbjct: 300 KAMGVGIGDQFDISGIRYDKIIFMTDADVDGAHISTLLMTFFFRYMSEVIEAGHVYLAKP 359 Query: 525 PLYRIDLG----KEVYYALTEEEKEGVL-----------------EQLKRKKGKPNVQRF 563 PL+ + G +++ Y E E L + ++ G QRF Sbjct: 360 PLFGLSKGTGSNRKIDYIYDEAALEEKLTEKINERKAAGVKIDENAERFKQAGYTAQQRF 419 Query: 564 KGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG 623 KGLGEM+ QL ETT++P R LV++ I ED +R DA+ L+ E R+N++Q Sbjct: 420 KGLGEMDASQLWETTMNPENRTLVKVNI--EDAERADAIFTKLMG-DSVELRKNFIQTNA 476 Query: 624 DMAEIE 629 +E Sbjct: 477 AKVNVE 482 >UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae RepID=TOP2_CRIFA Length = 1239 Score = 457 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 128/671 (19%), Positives = 252/671 (37%), Gaps = 63/671 (9%) Query: 6 NADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEV 39 +A + LT ++ V RP MY + + E+ Sbjct: 3 DASKYQKLTPIDHVLLRPEMYVGSIETQSIPMFVFDPAKGKMVWESMQVNQGLLKIVDEI 62 Query: 40 IDNSVDEALAG----HAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 95 + N+ D + + + + V +DG G+P+ E + E++ L Sbjct: 63 LLNAADNINNSVRGARMTYISIKISDSGEIMVENDGAGLPIVKSKEHKMYIPEMVFGHLL 122 Query: 96 AGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGT 155 ++N + G HG G + N LS + V R G+ +++++ + ++ V Sbjct: 123 TSSNYNNDASSTTAGRHGYGAKLTNILSTKFSVVCRTAGREFHMSWTDHMRMATTPRVSN 182 Query: 156 CGKR-NTGTSVHFWPDETFFD--SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR 212 + T V F PD F + S+ + VL + + + + +NN Sbjct: 183 VDPKEKNVTRVTFMPDYAHFGFPTAAISLD-MKRVLHKRIMDLAAMFSKIEVRLNNVPFG 241 Query: 213 WC-YQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLI 271 + + D Y +P +PF+ + A + VN + Sbjct: 242 FQTFNDYARLY--SLPGADGAMPPEPFVHTGPNGS----IAFVPQLTQSPKRIVGVVNGV 295 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T GGTH + L + R++ G + + ++ + P+F Sbjct: 296 VTYNGGTHCTSAMEILETGLDSL--SRSLKKDGKVIDTNRVARHFTVLVFLIQSQPKFDS 353 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL 391 Q+K RL S + V + A +L + M A + R Sbjct: 354 QSKARLVSTVT---MPRVPRTALDQYLAAMPFLEAHMNSMDDQLAAELNKEIGTGKRLSS 410 Query: 392 TSGPALPGKLADCTAQDLNR---TELFLVEGDSAGGSAKQARDRE---YQAIMPLKGKIL 445 S + KL D T+ + L + EGDSA A + E + + PL+GK+L Sbjct: 411 RSLISSITKLVDATSSRSDGKNIRTLIVTEGDSAKALALNSLSSEQKKFCGVFPLRGKLL 470 Query: 446 NTWEVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLC 503 N + + +E+ D+ +A+G++ ++LRY ++ ++ D D+DG HI L+ Sbjct: 471 NVRNKNLKRLKTCKELQDLFLALGLELGKTYKSPAELRYQRLLVMTDQDADGSHIKGLVI 530 Query: 504 ALFVKHFRALVKH--GHVYVALPPLYRID-LGKEVYYALTEEEKEGVLEQLKRKKGKPNV 560 F + +L++H G++ + P+ +I GK ++ Q + + Sbjct: 531 NAFESLWPSLLQHNPGYISLFSTPIVKIKVNGKAKEVVAFHSFRDFHRWQRANPNARYSA 590 Query: 561 QRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 + +KGLG + +E D R +++L ++ +D + D++ D E R+ W+ Sbjct: 591 KYYKGLGTSTTAEGKEYFADME-RNVMRLVVEPKDHRLLDSVFDSA----EVEWRKEWMS 645 Query: 621 E-KGDMAEIEV 630 + E+++ Sbjct: 646 KANAFQGEVDI 656 >UniRef50_Q7RHG3 DNA topoisomerase II, putative n=3 Tax=Plasmodium (Vinckeia) RepID=Q7RHG3_PLAYO Length = 930 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 184/677 (27%), Positives = 305/677 (45%), Gaps = 121/677 (17%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y+A I +L GLE VR+RPGMY T + + E++DN+VDE ++ VI+ Sbjct: 111 NNYDAKDIVILEGLEAVRKRPGMYIGNTDSKGLHQILFEIVDNAVDEYNNHECNQIKVII 170 Query: 60 HADQSLEVIDDGRGMPV---DIHPEEGVPAVELIL------------------------- 91 H D+S+ + D+GRG+P + + + V +L Sbjct: 171 HNDESITIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFLDDDINMIVNEEKGKQKKT 230 Query: 92 ---------CRLHAGGKFSNKN-------------------YQFSGGLHGVGISVVNALS 123 + K ++ + Y++S GLHGVG+SV NALS Sbjct: 231 KKEVQETGNSNISNNSKGNDTSVDGTKENKDKNKTNENLQKYKYSSGLHGVGLSVSNALS 290 Query: 124 KRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS-PRFSVS 182 ++VNV RD ++YNI E G+ V++L V C + GT +H+ PD T F + + + Sbjct: 291 TFMKVNVFRDNKIYNIELEKGKVVKELN-VQDCPIKKRGTQIHYKPDNTIFKTNIKHNSE 349 Query: 183 RLTHVLKAKAVLCPGVEITFKDEINNTE-----------------------QRWCYQDGL 219 + + L A L + F DE N+ + + ++ GL Sbjct: 350 FIKNRLHQLAYLNDKLTFYFYDERNSNKGNSDKVSENVENNSYTKLDNYEYEIIKHEGGL 409 Query: 220 NDYLAEAVNGLPTLPE---KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG 276 ++Y+ + + + K + VD L W+ S+VN + T+ G Sbjct: 410 DEYMEKLTKNKTNIFKTNNKVISISCFQKNIHVDLKLKWVTNQYNENILSFVNNVNTIDG 469 Query: 277 GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKER 336 GTHV+ ++ + ++ + + V + E I + +LS+KM +P+F GQTK + Sbjct: 470 GTHVDAMKYAISRSINYNVKKNETIKNFVNIPGEYIREGLTAILSIKMNNPEFEGQTKTK 529 Query: 337 LSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA--QRRMRAAKKVVRKKLTS- 393 L S + ++ + + + A+ + +AA+ ++R K Sbjct: 530 LGSYYLKPILESIIFEKLSEIFDFEPNLLNTIYLKALQAKKSDEEAKAARDLIRSKNNQY 589 Query: 394 -GPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWE-VS 451 LPGKL DC + D+++ E+F+VEGDSA GSAKQAR+RE QAI+PLKGKILN + + Sbjct: 590 YSTILPGKLVDCISDDISKNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIKN 649 Query: 452 SDEVLASQEVHDISVAIGIDPDSDDLS-----------------------QLRYGKICIL 488 + ++ + E+ + AIG++ + D+ LRYGKI I+ Sbjct: 650 NKKIFENIELKSLITAIGLNVNYDNSKTGKSNTNKRNDNKDIKKNNFIDTSLRYGKIIIM 709 Query: 489 ADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVL 548 DAD DG HI LL + + ++++G+VYVA PPLY++ K K+ V+ Sbjct: 710 TDADVDGEHICILLLTFLYRFQKEIIENGNVYVACPPLYKVTYNK----FFDNNIKDSVI 765 Query: 549 EQLK--RKKGKPNVQRF 563 + K K + + Sbjct: 766 SKFNVTTKASKYIIHTY 782 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%) Query: 553 RKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRS 612 K +QRFKGLGEM QL TT+DP R+L+++T+ D + + +++ L+ + S Sbjct: 860 SSSKKYEIQRFKGLGEMMADQLWSTTMDPQVRKLIRVTVS--DAIKANNLINSLMGED-S 916 Query: 613 EDRRNWLQEKG 623 + R++++ + Sbjct: 917 KSRKDFIIKNS 927 >UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV Length = 1263 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 131/714 (18%), Positives = 245/714 (34%), Gaps = 110/714 (15%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT------------------------------RPNHLG 36 + + E + P Y + + Sbjct: 15 EEKYQKKNLHEHILHSPDTYIGSIEEKTCNMWIFNESAGEDDAKIIFKEITYVPGLYKIY 74 Query: 37 QEVIDNSVDEALAGH-AKRVDVILH-ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRL 94 EVI N+ D + V + + V ++G G+ V IH E + +I L Sbjct: 75 DEVIVNAADHNKRCQTCNIIKVDIDQKTGQISVWNNGDGIDVAIHKEHNIWVPSMIFGEL 134 Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQV 152 + + GG +G G + N S + G+ + F N ++ Sbjct: 135 LTSTNYDKNEEKTVGGKNGFGAKLANIYSVEFTIETVDANKGKKFFQRFTNNMYDKEEPK 194 Query: 153 VGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR 212 + + K+++ T + F PD F L + K + + K N+ + Sbjct: 195 ISSF-KKSSYTKITFIPDFKKFGLKCLDDDTLA-LFKKRVFDLA-MTTNAKVYFNDKQIV 251 Query: 213 WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGG---ELLTESYVN 269 Q+ Y+ PE DT W + + + E S+VN Sbjct: 252 ---QNNFKKYVGLY------FPEGSQHKVVIDDTTHERWKVGVIYDPTDQLEHQNISFVN 302 Query: 270 LIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQF 329 I T +GGTHV + +++ ++ + + V++ I + + + + +P F Sbjct: 303 SICTSRGGTHVEQVVGQIVNGLKTAIVKKA---KNVQIKPAMIKENLIFFVDATIVNPDF 359 Query: 330 AGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRK 389 QTKE L+ + V + FI + + +++ A + A+ +K + Sbjct: 360 DTQTKEYLTKKAANFGSKFEVTEKFIKGVIKTGVCDQII---ANAKAREEANLSKTDGKG 416 Query: 390 KLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILN 446 + ++ + L L EGDSA A + R+Y + PL+GK+LN Sbjct: 417 RGPVRYEKLYNAHKAGTKEGYKCTLILTEGDSAKTFAMSGLNVIGRDYYGVFPLRGKLLN 476 Query: 447 TWEVSSDEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCA 504 + S ++ ++E+ I +G++ DDL LRYG I ILAD D DG HI L+ Sbjct: 477 VRDASPKKIADNEEITAIKKIVGLEQGKVYDDLKGLRYGSIMILADQDVDGYHIKGLIMN 536 Query: 505 LFVKHFRALVK-HGHVYVALPPLY----RIDLGKEVYYALTEEEKEGVLEQLKRKKGKPN 559 + +LVK G + PL K+V + + E ++ + Sbjct: 537 FIHCFWPSLVKYEGFIQSFATPLLKATKGKGKTKQVVAFTSPQSFEEWKKE-NNDGKGWS 595 Query: 560 VQRFKGLGEMNPMQLRETTLDPNTRRLVQLT----------------------------- 590 ++ +KGLG +P + +E D N + + Sbjct: 596 IKYYKGLGTSDPAEAQECFADLNDKLVKYFWEPKKKNLESESNSKSVDSNKSKTTNKKKI 655 Query: 591 ---------------IDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAEIE 629 ++ ++ M + A R +DR+ W+ ++ Sbjct: 656 ESEFIEEESDIISDTYKPKNKDISEDAMTLAFAGGREDDRKIWINTYNPDNYLD 709 >UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 Tax=Caenorhabditis RepID=TOP2M_CAEEL Length = 1054 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 120/578 (20%), Positives = 217/578 (37%), Gaps = 24/578 (4%) Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L + V ++G G+PV+IHP EG+ L+ L + + + GG +G G + Sbjct: 9 LRETARISVWNNGSGLPVEIHPTEGIYVPTLVFGNLFTSSNYDDSEIKTVGGRNGYGAKL 68 Query: 119 VNALSKRVEVNV--RRDGQVYNIAFENGEKVQDLQVVGTC--GKRNTGTSVHFWPDETFF 174 N SK V R + + + + K + V T V F PD F Sbjct: 69 CNIFSKEFIVETVDTRIKRRFRQKWYDNMKKCNEAEVVEILDETVKDYTKVEFVPDLERF 128 Query: 175 DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLP 234 + S + + + + + +N + C DG DY+ + L Sbjct: 129 QIDKLSDDVIDLIGRRVFEVAATLPRDVDVYLNGQK---CDVDGFEDYVKMFNDSSSLLF 185 Query: 235 EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 P A S+VN I T +GG+HV+ + +++ ++ Sbjct: 186 LHPTPRWHV--GVAKRNNFFGESHVVLPKIVSFVNNINTEKGGSHVDYVMDKIVNIIKPI 243 Query: 295 CEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 + + P + I + + ++ +++P F QTKE L+++ Sbjct: 244 VDSKLGDPTK-SVKPAVIKNNLSIFINCLIENPSFESQTKETLTTKAKNFGSIFECDAKK 302 Query: 355 ILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTEL 414 + E + E + + +++ K+V + L + L Sbjct: 303 TAEWAEQSGLIEDIVEEVL-NMKKKKLPGKRVSVSSVRDIVKLEDAEWAGITGTAEKCTL 361 Query: 415 FLVEGDSAGGSAKQA---RDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID 471 L EGDSA A RE + PLKGK+LN + ++E+ ++ +G+ Sbjct: 362 ILTEGDSAKALALAGLEVLGRETYGVFPLKGKLLNVSNLDDARASKNEEISNLLRILGLK 421 Query: 472 PDSDDL---SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLY 527 + + LRYG++ ILAD D DG HI L+ K + +LV G + PL Sbjct: 422 FEDSNSITRESLRYGRLLILADQDEDGSHIKGLIVNFIHKFWPSLVHTDGFIQSFRTPLL 481 Query: 528 RIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLV 587 + G +V + E + GK ++ +KGLG + RE D + + Sbjct: 482 KAKKGDKVRSFFSMNEYRKW--ADVEEGGKWKIKYYKGLGTSTSNEAREYFSDLDHHTVN 539 Query: 588 QLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM 625 D D + M + +S++R+ W++ + Sbjct: 540 FKYTGTTD----DDAIRMAFDRDKSDERKEWIRRSENE 573 >UniRef50_Q10XN8 DNA gyrase subunit B n=6 Tax=Bacteria RepID=Q10XN8_TRIEI Length = 891 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 165/438 (37%), Positives = 241/438 (55%), Gaps = 16/438 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y A+ I+VL GLE VR+RPGMY TT +HL EV+DNS+DEALAG+ ++V Sbjct: 3 SNNYGAEQIQVLEGLEAVRKRPGMYIGTTGPRGLHHLVYEVVDNSIDEALAGYCTHIEVD 62 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+ D S++V DDGRG+PVD H + G A+E ++ LHAGGKF Y+ SGGLHGVG+SV Sbjct: 63 LNKDGSVKVTDDGRGIPVDTHSKTGKSALETVMTVLHAGGKFGGGGYKVSGGLHGVGVSV 122 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS-P 177 VNALS+ VEV V RD + + +E G+ DL+ ++ TGTSV F PD+ F + Sbjct: 123 VNALSEWVEVTVWRDKKTHIQGYERGQPTGDLKS-KPNKEKRTGTSVQFLPDQEIFTTGI 181 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEI-------NNTEQRWCYQDGLNDYLAEAVNGL 230 +F + + L+ A L GV+IT D + +CY+ G+ +Y+ Sbjct: 182 QFDYNTIIGRLRELAYLNAGVKITITDNRLELVKSDEPKVESYCYEGGIKEYVTYMNREK 241 Query: 231 PTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 +L E+ + V+ AL W + + N I T+ GGTH+ GL+ L Sbjct: 242 QSLHEEVIFVRGEKNDVQVEVALQWCIDAFSDNVLGFANNIRTIDGGTHLEGLKTVLTRT 301 Query: 291 MREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 M RN L L E++ + V+SVK+ +P+F GQTK +L + + V + Sbjct: 302 MNGIARKRNKLKDSDPNLGGENVREGLTAVISVKVPEPEFEGQTKTKLGNTEVRGIVDSL 361 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQ---RRMRAAKKVVRKKLTSGPALPGKLADCTA 406 V + +L+ N Q A+ + + AI + + RA V RK + LPGKLADC+ Sbjct: 362 VGEVLSEYLDFNPQVADAVLDKAIQAFKAAEAARRARDLVRRKSVLESSPLPGKLADCST 421 Query: 407 QDLNRTELFLVEGDSAGG 424 ++ +E++LVEGDSA G Sbjct: 422 KNPEESEIYLVEGDSASG 439 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 136/246 (55%), Gaps = 8/246 (3%) Query: 390 KLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWE 449 ++ S L +L + N L G SAKQ RDR +QAI+PL+GKI+N + Sbjct: 649 RVVSIEPLEERLDVYDIEVPNTHNFALASGVFVHNSAKQGRDRRFQAILPLRGKIINIEK 708 Query: 450 VSSDEVLASQEVHDISVAIGIDP--DSDDLSQLRYGKICILADADSDGLHIATLLCALFV 507 ++ + E+ + A+G+ D D SQLRY K+ I+ DAD DG HI TLL F Sbjct: 709 TDDAKIYKNNEIQSMITALGLGIKGDEFDASQLRYHKVIIMTDADVDGSHIRTLLLTFFY 768 Query: 508 KHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLG 567 ++ RALV G++Y+A PPLY+++ G+ YY ++ E +++ +QRFKGLG Sbjct: 769 RYQRALVDQGYIYIACPPLYKVERGRNHYYCYSDRELNELIQNEFPDNANYTIQRFKGLG 828 Query: 568 EMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDM-- 625 EM P+QL +TT++P TR L ++ I ED D + +L+ R RR +++ G Sbjct: 829 EMMPVQLWDTTMNPETRTLKRVEI--EDAAEADRIFTVLMG-DRVAPRREFIETYGPKLK 885 Query: 626 -AEIEV 630 ++++ Sbjct: 886 ITDLDI 891 >UniRef50_Q59189 DNA topoisomerase 4 subunit B n=27 Tax=Bacteria RepID=PARE_BORBU Length = 599 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 181/637 (28%), Positives = 304/637 (47%), Gaps = 58/637 (9%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTD--------TTRPNHLGQEVIDNSVDEALAGHAK 53 TQ Y+ I L+ LE +R R GMY L +E+IDNS+DE + G+ Sbjct: 3 TQNYDESKIITLSSLEHIRLRSGMYIGRLGDGSNIDDGIYVLIKEIIDNSIDEFIMGYGN 62 Query: 54 RVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHG 113 + + + + + D GRG+P+ E + ++ G K+++ +QFS GL+G Sbjct: 63 EIFIK-KENNLISIRDYGRGIPLGKVIES--------VSVINTGAKYNDDVFQFSVGLNG 113 Query: 114 VGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETF 173 VG VNALS + V R+G+ + F G+ ++ ++ GT V F D Sbjct: 114 VGTKAVNALSSKFLVRSTRNGKSFEALFSKGKLLESREI---KSSDKDGTYVEFLADSEI 170 Query: 174 FDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 F +S L A L G+ I + D Q + ++GL D+L + L Sbjct: 171 FGKYSYSEDFLKRRFFHYACLNKGLIINYND------QIFESKNGLLDFLNSEIKSDDLL 224 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMRE 293 + + + +++A GE S+VN T GGTH G R+G + A+ + Sbjct: 225 YDIVYYSSK-----TLEFAFSHTNNYGETYF-SFVNGQYTNDGGTHQTGFREGFVRAIND 278 Query: 294 FCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDA 353 F + S+ DI + LSVK++DP F QTK +L + + V+ V+ Sbjct: 279 FLKK--------TYSSTDIREGLVATLSVKIKDPIFESQTKNKLGNIETRGNVAKEVQKI 330 Query: 354 FILWLNQNVQAAELLAEMAISSAQ--RRMRAAKKVVRKKLTSGPALPGKLADC------T 405 L ++ A+L+ + + + + + + + +K R++ KL DC + Sbjct: 331 ISEILYKDKILAKLIEKKVVDNERLRKELSSVRKEARERAKKISFKIPKLKDCKFHFNDS 390 Query: 406 AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDIS 465 ++ +T +FL EGDSA GS RD QAI L+GK N +E + E+ ++E++++ Sbjct: 391 SKQSEQTMIFLTEGDSATGSMVSCRDVYTQAIFSLRGKPQNMFEKNKSEIYKNEELYNMM 450 Query: 466 VAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPP 525 VA+GI + + LRY K+ I DAD DG HI LL F+ F L+ +GH+Y+ P Sbjct: 451 VALGI---EESIENLRYNKVVIATDADFDGFHIRNLLLTFFLTFFEDLILNGHMYILETP 507 Query: 526 LYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRR 585 L+R+ K Y +EEEK+ + +L KG V RFKGLGE++P + + +D N+ + Sbjct: 508 LFRVRNKKITTYCYSEEEKQKAILEL---KGGCEVTRFKGLGEISPNEFKG-FIDINSIK 563 Query: 586 LVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 L ++ + + + + + + +RRN++ E Sbjct: 564 LTKVDLFNIK--EIKEKLGFYMGQN-TPERRNFIMEN 597 >UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis RepID=C6LX36_GIALA Length = 1492 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 131/742 (17%), Positives = 241/742 (32%), Gaps = 123/742 (16%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT-------------------------RPNHL 35 M+Q I+ +TG E V RP MY + + Sbjct: 1 MSQK---TKIQRVTGSEHVLLRPDMYVGSVSSAETFLWLYNPDQGLYYTKANIVPGLCKI 57 Query: 36 GQEVIDNSVDEALAG-------HAKRVDVILHA-DQSLEVIDDGRGMPVDIHPEEGVPAV 87 E+I N+ D + + ++ V +DG + +E + Sbjct: 58 FDEIIVNASDNKQRDSDRSAGHKMSYIKCDVDVVSGAISVENDGVEGLLHFDEKEKMYLP 117 Query: 88 ELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKV 147 L L + + + +GG +G G + N S + V ++ +G+V+ + + K Sbjct: 118 TLAFGILMTSSNYDDTEQRVTGGRNGYGAKLTNIFSTKFTVLLQENGRVFEQTWTDNMKN 177 Query: 148 QDLQVVGT-CGKRNTGTSVHFWPDETFFDSPR-FSVSRLTHVLKAKAVLCPGVEITFKDE 205 + K+ F PD F ++++ AV G I K Sbjct: 178 TQSPRIEDVKDKKKNFIRFSFTPDYMKFGMTSGLDRDHAAYMMRR-AVDVAGCNIGLKLI 236 Query: 206 INNTEQRW--------------------CYQDGLNDYLAEAVNGLPTLPE---------- 235 IN E + Y+ D N + P+ Sbjct: 237 INGEELKIANFEQYARMVYRSINPEITQFYEASRGDAAQVGANDSDSEPDLKSAATKAKP 296 Query: 236 ---------------------------KPFIGNFAGDTEAVDWALLWLPEGGELLTESYV 268 + D L + GEL+ S+V Sbjct: 297 KAKRTKKAVETNSLLVPIDELSKPSDWTSDYLKVISVNKFWDIGLGYTDS-GELVQVSFV 355 Query: 269 NLIPTMQGGTHVNGLRQGLLDAMREFCEY--RNILPRGVKLSAEDIWDRCAYVLSVKMQD 326 N I T GGTHV+ + ++ + + + KL+ + + + + + Sbjct: 356 NSINTTDGGTHVDAILDLIMSQLNDILIKSFQQDAKNAKKLTRQQLKSCLVLFIRSLVVN 415 Query: 327 PQFAGQTKERLSSRQC----AAFVSGVVKDAFILWLNQNVQAAELL---AEMAISSAQRR 379 P F QTK L + + + + L + +Q L A + + Sbjct: 416 PSFDSQTKISLKTDKAALLRSLGSTQAELTNLATQLVKRIQDVRPLWNALRQASYNQAAK 475 Query: 380 MRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR-----DREY 434 + + G ++ ++ L L EGDSA A ++Y Sbjct: 476 LLTKTDGSKTSQLLGIPKLDDAIAAGTRESSKCTLILTEGDSAKALAVDGISSIEDGKKY 535 Query: 435 QAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDL-----SQLRYGKICILA 489 + PL+GK++N S D+V + E+ ++ +G+ D + LRYG + I+ Sbjct: 536 YGVFPLRGKVINVRNESIDKVSNNAEITNLKKILGLKQGMDYSTQEARNTLRYGHVMIMT 595 Query: 490 DADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVL 548 D D DG HI LL LF ++ L + + + + P+ R + + T E + Sbjct: 596 DQDPDGSHIKGLLINLFDTYWNGLARSNKFLDFFITPIVRCTQARNMKTFYTIPEYKKWT 655 Query: 549 EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA 608 Q K N+ +KGLG N ++ L + E + + Sbjct: 656 -QTVTDLPKWNINYYKGLGSSNTTDAKQYFQQIAN-NRKTLIYNPESASKLK----LAFD 709 Query: 609 KKRSEDRRNWLQEKGDMAEIEV 630 KK ++DR+ W+ +++ Sbjct: 710 KKLADDRKTWISGTDPDTYLDL 731 >UniRef50_C9DGI8 Gp60plus39 DNA topoisomerase subunit n=1 Tax=Deftia phage phiW-14 RepID=C9DGI8_9CAUD Length = 648 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 131/660 (19%), Positives = 242/660 (36%), Gaps = 72/660 (10%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTR--------------------------PNHLGQ 37 T + ++L+ + +R RPG Y L Sbjct: 22 TQDVSKYKMLSERDHIRIRPGRYLGDINTSLVKDSWTVNEQGQVERRDVQQNPAFTKLFD 81 Query: 38 EVIDNSVDEALAG---HAKRVDVILHAD-QSLEVIDDGRGMPV------DIHPEEGVPAV 87 E+I NS D +L H + V + + V D+G G+PV + Sbjct: 82 EIITNSADFSLTADGKHLNIIRVDYSREHGCISVYDNG-GIPVVETIVDREGQPTKLWIP 140 Query: 88 ELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKV 147 ++I L +G F+++ S G +G G ++VN S R +V ++I + +G Sbjct: 141 DMIFGFLRSGSNFNDEADSESAGQNGEGSTLVNVFSSRFDVETCDGKNKFSITYLDGMAN 200 Query: 148 QDLQVVGTCGKRNTGTSVHFWPDETFFDSP---RFSVSRLTHVLKAKAVLCPGVEITFKD 204 + V T + ++P+ + + L A + + + Sbjct: 201 KTAPEVVAAQGATPFTRITYFPEWSIMGMTGQEDWIEDTLRRRCLEVAACNTHIRVYYNG 260 Query: 205 EINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLT 264 + N ++ + L A W + Sbjct: 261 KPVNVKKFGDFAAML--------------------DPVCVSESAPKWDVALSLSKNGFKH 300 Query: 265 ESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKM 324 SYVN T GGTH+N + ++ +R E + +I ++ ++ ++ Sbjct: 301 YSYVNSTLTFVGGTHINHVMDKIVAEVRAHIES----KTKQDIKPAEILNQFQLTVAARI 356 Query: 325 QDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAK 384 +P+++ QTKE L + + V FI + + +LL A + ++ A+ Sbjct: 357 NNPRYSSQTKENLITPVSSYNVKYSPSKEFIKAIIDSPMMKKLLEWAERRKAVQDIKEAE 416 Query: 385 KVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKI 444 K ++ + K T ++ LF+ EGDSA QA + + + PL+GK Sbjct: 417 KEIQDARKASFHHIPKYRPATNKNKAENILFVAEGDSALKP-LQAAKKPHHGLFPLRGKP 475 Query: 445 LNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCA 504 N ++ + + +E D+ +G+D + +RY + + DAD DG HI LL Sbjct: 476 DNVFDKTIRHLAKQKEFQDLIQILGLDLHQFNSDTIRYSALVVATDADLDGAHIRGLLTV 535 Query: 505 LFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFK 564 F + +R L+ G + + P+ + GKE TE+E E K + +K Sbjct: 536 AFWRFWRPLIDEGFLRFLVTPIITVKQGKETIEFFTEQEYEDWRAANPT--AKYTRKYYK 593 Query: 565 GLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD 624 GLG + DP VQ D++ D + + +++ R++WL D Sbjct: 594 GLGSWATEDMERFMNDPKYMVKVQPLTDEDVDN-----LVLAFDPSKADARKSWLGLSAD 648 >UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RIW2_TETNG Length = 1568 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 101/572 (17%), Positives = 189/572 (33%), Gaps = 96/572 (16%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT------------------------------------ 30 + T LE + RP Y + Sbjct: 15 ERVYQKKTQLEHILLRPDTYIGSVEPVTQVGPGSTAPRPKTTPFLEYSCPIWFFFQQMWV 74 Query: 31 ----------------RPNHLGQEVIDNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGR 72 + E++ N+ D + + + + ++ + ++G+ Sbjct: 75 FDEEVGMNQREVTYVPGLYKIFDEILVNAADNKQRDKNMTAIKITIDPESNTISIWNNGK 134 Query: 73 GMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNV-- 130 G+PV H +E + LI L + + + +GG +G G + N S + V Sbjct: 135 GIPVVEHKDEKMYVPALIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTKFTVETAC 194 Query: 131 RRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKA 190 + + ++N V + T V F PD + F + + +L Sbjct: 195 KEYRHSFKQTWQNNMTKTSEPKVKLFDG-DDFTCVTFQPDLSKFKMEKLDKDTMA-LLTR 252 Query: 191 KAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVD 250 +A G K +N + +G Y+ V L E +T Sbjct: 253 RAYDVAGSCRGVKVTLNGKKLPV---NGFRSYVDLYVKDK--LDETGVALKVVNETVNER 307 Query: 251 WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAE 310 W + S+VN I T +GG H++ + ++ + E + +N GV + Sbjct: 308 WEVCLTLSEKGFQQISFVNSIATTKGGRHIDYVVDQIVAKLIEVVKKKN--KAGVTVKPF 365 Query: 311 DIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNV-------- 362 + + ++ +++P F QTKE ++ + + + D FI + Sbjct: 366 QVKNHIWVFVNALIENPSFDSQTKENMTLQTKSFGSKCPLSDKFIRAVRTPPGRPSSCTR 425 Query: 363 ---------------QAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQ 407 E + AQ ++ V+ G D + Sbjct: 426 AVKSRCLCHLQATNCGIVESILNWVKFKAQTQLNKKCSSVKHSKIKGIPKLDDANDAGGK 485 Query: 408 DLNRTELFLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDI 464 + L L EGDSA A R+ + PL+GKILN E + +++ + E+++I Sbjct: 486 HSSECTLILTEGDSAKSLAVSGLGVIGRDRYGVFPLRGKILNVREATHKQIMENAEINNI 545 Query: 465 SVAIGIDPDS-----DDLSQLRYGKICILADA 491 +G+ + L LRYGKI I+ D Sbjct: 546 IKIVGLQYKKSYDDAESLRSLRYGKIMIMTDQ 577 >UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q8HFR9_9EUGL Length = 1247 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 130/669 (19%), Positives = 245/669 (36%), Gaps = 69/669 (10%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 A + L+ ++ V RP MY + + E++ Sbjct: 2 AHKYKKLSPIDHVLLRPEMYVGSVESQPIQLFLLDDQHSKVEWTTADLNHGLLKIFDEIV 61 Query: 41 DNSVDE---ALAGHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHA 96 N+ D + ++V + + V +DG G+P+ + + E+I L Sbjct: 62 LNAADNIHNSKRNPMTFINVTIDETTGQITVENDGAGIPLVKSKDHKLLIPEMIFGHLLT 121 Query: 97 GGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC 156 + N S G HG G + N +S+ V R + I + + + D V Sbjct: 122 SSNYDNDPDSMSAGRHGYGAKLTNIMSQEFIVYCRTADKEVTIRWTDHMRSIDDYQVQPT 181 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVS---RLTHVLKAKAVLCPGVEITFKDEINNTEQRW 213 + T + F PD + F + + L + A P V ++F + Sbjct: 182 NEAGNLTKITFTPDFSVFGVTKLTKDMYRILHKRILDLAAAFPSVTVSFNGTALDVGSFA 241 Query: 214 CYQDGLNDYLAEA--------VNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGG-ELLT 264 Y + +G P F + + + A + P+ T Sbjct: 242 SYVKLFEAPASLFSAPTAPVVADGDAAPPPAELNKPFLFEVKHLRLAFIPQPQASVSRRT 301 Query: 265 ESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKM 324 + VN + T GGTHV +Q L DA+ + G+ ++ V+ ++ Sbjct: 302 FAVVNGVVTYSGGTHVQAAQQILTDAVDALVAQKK--KEGIIVTVNTFLRYFTTVVFLET 359 Query: 325 QDPQFAGQTKERLSSRQCAA--FVSGVVKDAF--ILWLNQNVQAAELLAEMAISSAQRRM 380 P+F Q+K RL S+ F +G + + + +L+ + + +++ + Sbjct: 360 TQPKFDSQSKVRLVSK-VKFPRFPTGQLVEHLATMTFLSDASKGQMDVLNKELNA----L 414 Query: 381 RAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAI 437 R +++ L A L + EGDSA A + R+Y + Sbjct: 415 IQVSGKRRPMISTLTKLVD-AASAGGSGSEIRTLIVTEGDSAKALALNSLSNEQRKYFGV 473 Query: 438 MPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDG 495 PL+GK+LN + + +E+ D+ A+GI+ LRY ++ ++ D D+DG Sbjct: 474 FPLRGKLLNVRNNNLARLKKCKELCDLFAALGIEIGRRYTSTESLRYQRLLVMTDQDADG 533 Query: 496 LHIATLLCALFVKHFRALVKH--GHVYVALPPLYRI-DLGKEVYYALTEEEKEGVLEQLK 552 HI LL + F + +L++H G + + PL R G +V+ +E Sbjct: 534 THIKGLLISAFESLWPSLLQHSLGFISIFSTPLIRATTRGGDVHSFYNVQEFVAWKHDNA 593 Query: 553 RKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL-VQLTIDDEDDQRTDAMMDMLLAKKR 611 R + ++ +KGLG + +E + +Q+T D ++D + Sbjct: 594 RLASECFIKYYKGLGTSTTTEGKEYFKQMEQHLMPLQVTPSD------SQVLDNVFDSDE 647 Query: 612 SEDRRNWLQ 620 + R+ WL Sbjct: 648 VQWRKEWLS 656 >UniRef50_Q4UIX0 DNA topoisomerase II, putative n=2 Tax=Theileria RepID=Q4UIX0_THEAN Length = 922 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 199/679 (29%), Positives = 299/679 (44%), Gaps = 121/679 (17%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 T Y++D I VL GL VR+RPGMY T + L EV+DNSVDE LAG R+ V Sbjct: 103 TGEYSSDDIIVLEGLNAVRKRPGMYIGNTGERGVHQLLYEVLDNSVDEYLAGFCNRITVS 162 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN---------------- 102 L D S+EV D+GRG+P DI P+ G +E +L LH+GGKF + Sbjct: 163 LMKDGSVEVSDNGRGIPCDISPKTGKSGLETVLTVLHSGGKFQDIFPPNSTSMSSEDQND 222 Query: 103 --------------KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQ 148 K Y++S GLHGVG+SVVNALS+ + V+V + + Y+I G V+ Sbjct: 223 LKSRKKGEKEHEEKKVYEYSSGLHGVGLSVVNALSELLIVDVYKGPKSYHIELSKGNIVK 282 Query: 149 DLQVVGTCGK--------RNTGTSVHFWPDET-FFDSPR--------------------- 178 L + GT++ F PD F + Sbjct: 283 PLAEFSEPETTEKSNNNLKRYGTTIRFLPDYKNIFKTHHQHTETEKEEDYDTTTNKSGLD 342 Query: 179 ---------FSVSRLTHVLKAKAVLCPGVEITFKDEI------NNTEQRWCYQDGLNDYL 223 F + + K + L PG+ I D E+ + G +L Sbjct: 343 TKCSGCKNGFILELIKTRAKELSYLNPGLSIKLVDYRITDENNEPWEETYRNTGGTRSFL 402 Query: 224 AEAVNGLPTLPEKPFIGNFAG--DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVN 281 E + L + G V+ + W E L + Y N + T+ GTH++ Sbjct: 403 EELIKDKTPLYKPISYITIKGVISNINVEVSFSWSLESYTALIKGYANNVSTIA-GTHID 461 Query: 282 GLRQGLLDAMREFCEYRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSR 340 G + + + + VK L+ E I + V+SVK+ +F GQTK +L + Sbjct: 462 GFKISITRCVNGLLKKYGYFKGNVKPLNGEFIREGMTAVISVKLTGAEFDGQTKTKLGNA 521 Query: 341 QCAAFVSGVVKDAFILWLNQNVQAAELLAEM---AISSAQRRMRAAKKVVRKKLTSGPAL 397 +V + F L N + + A + A + +K + + Sbjct: 522 LVKTVTEKIVNEQFTNILENNKELLLAIHNKSQAAKKAFDAARTAKDLIRQKSSSIVSNI 581 Query: 398 PGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVS-SDEVL 456 GKL +C++ + ELF+VEG+SA G+AKQAR+R++QA++PLKGKILN +++ + +VL Sbjct: 582 SGKLTECSSSKVENNELFIVEGESAAGNAKQARNRQFQAVLPLKGKILNIEKITDNSKVL 641 Query: 457 ASQEVHDISVAIGIDPDS---------------------------------DDLSQLRYG 483 +Q++ + +IGI + DLS+LRYG Sbjct: 642 ENQQIQLLMNSIGISINPVTWRQNDLTEGTHMAMDRFIEMNSSKLTRKQIWLDLSKLRYG 701 Query: 484 KICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID--LGKEVYYALTE 541 KI +L DAD DG H+ +LL L + +L HG VYVA PPLYRI K+ Y+ ++ Sbjct: 702 KIILLTDADVDGSHLKSLLLCLLYRLCPSLYLHGRVYVASPPLYRITNLRNKKYIYSWSQ 761 Query: 542 EEKEGVLEQLKRKKGKPNV 560 E +++L K Sbjct: 762 EHLLKTIKELNSKYSPKET 780 Score = 76.2 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 10/105 (9%) Query: 529 IDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQ 588 I ++ E + + + + +QRFKGLGEM QL ETT+DP R L + Sbjct: 825 ITKDEKS----DELDLYNINKSFSKNNKHLIIQRFKGLGEMMANQLWETTMDPKKRILKR 880 Query: 589 LTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG---DMAEIEV 630 + + E ++ +L+ + R+ ++ ++ ++++ Sbjct: 881 IVVSQE--PEISEIIRLLMGSD-VQSRKQYIFNNSGAFNLEDLDI 922 >UniRef50_C7PPD8 DNA topoisomerase type IIA subunit B region 2 domain protein n=23 Tax=Bacteria RepID=C7PPD8_CHIPD Length = 640 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 180/654 (27%), Positives = 300/654 (45%), Gaps = 74/654 (11%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTD--------TTRPNHLGQEVIDNSVDEALAGHA 52 ++ Y D+I L E +R RPGMY L +EV DN +DE G Sbjct: 9 LSAAYTEDSIRSLDWREHIRLRPGMYIGKLGDGSSMDDGIYILLKEVADNCIDEHTMGFG 68 Query: 53 KRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH 112 K++D+ + + ++ + D GRG+P+ V ++ +++ G K+ +K +Q S GL+ Sbjct: 69 KQIDIRV-TEHNVTIRDYGRGIPLGK--------VVDVVSKINTGAKYDSKAFQKSVGLN 119 Query: 113 GVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDET 172 GVG VNALS V R+G+ FE G ++ + T GT V F PD+T Sbjct: 120 GVGTKAVNALSSYFRVESFREGRGKVAEFERGNLTKEHKEANTS--EPNGTLVTFTPDDT 177 Query: 173 FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPT 232 F + RF L + + L G+ I+F +++ ++GL D L N Sbjct: 178 VFRNYRFIPEFLENQIWNYCFLNAGLTISFNG------KKYISKNGLLDLLQRKTNEDEL 231 Query: 233 LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 + E ++ A+ + GE S+VN T QGGTH+ R+ + +R Sbjct: 232 RYPIIHL-----KGEDIEVAITHENQYGEE-YYSFVNGQHTTQGGTHLAAFREAFVKTLR 285 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS-------RQCAAF 345 +F + A DI +SV++Q+P F QTK +L S AF Sbjct: 286 DFYKK--------DYEATDIRASICAAISVRVQEPVFESQTKTKLGSLTVFENGPSMKAF 337 Query: 346 VSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA--KKVVRKKLTSGPALPGKLAD 403 V + +L++N AE L + S + R A KK+ ++ KL D Sbjct: 338 VLDFLSKHLDDFLHKNPTTAEALKKRIEQSERERKELAGIKKLANERAKKANLHNRKLRD 397 Query: 404 CT---------------AQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW 448 C T +F+ EGDSA GS ++R+ E QA+ L+GK LN++ Sbjct: 398 CRIHLNEEVSGKDKNDLETKRLNTTIFITEGDSASGSITKSRNVETQAVFSLRGKPLNSF 457 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVK 508 ++ V ++E + + A+ I+ L LRY +I + DAD DG+HI LL F++ Sbjct: 458 GLTKKIVYENEEFNLLQHALNIEEG---LEGLRYNRIVVATDADVDGMHIRLLLLTFFLQ 514 Query: 509 HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGE 568 F LVK+GH+Y+ PL+R+ ++ Y T+EE+ ++ +K+ KP + RFKGLGE Sbjct: 515 FFPDLVKNGHLYILETPLFRVRNKQQTIYCYTDEER---IKAIKKLGNKPEITRFKGLGE 571 Query: 569 MNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 ++P + ++ + + + D +++ + K ++ R+ ++ Sbjct: 572 ISPDEFAN-FINDDMKVEPVILS---KDTHIQKLLEYYMGKN-TQTRQEFIIGN 620 >UniRef50_C8XUB6 Topoisomerase II large subunit n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUB6_9CAUD Length = 637 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 143/657 (21%), Positives = 247/657 (37%), Gaps = 71/657 (10%) Query: 1 MTQTYN-ADAIEVLTGLEPVRRRPGMYTDTTR---------------------------P 32 M+ + + LT +E + RP + + R Sbjct: 1 MSDKIDIERKYKKLTHVEHILLRPERHLGSIRSSVGTVWVYDPTKDQVIFRDNFEYSPAL 60 Query: 33 NHLGQEVIDNSVDEALAGHAK---RVDVILHA-DQSLEVIDDGRGMPVDIHPEEGVPAVE 88 E+I N VD + K + V + + + V D+G G+PV H E Sbjct: 61 IKQFDEIITNCVDHSKTPEGKSLTEITVTVSPMNGQIIVADNG-GIPVVKHGVTNEWLPE 119 Query: 89 LILCRLHAGGKFSNKNYQF----SGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENG 144 ++ L+AG F++++ ++ SGG +G G S+VN SK V + Y FE+ Sbjct: 120 MLFGSLYAGSNFNDEDEEYNNQKSGGQNGEGASLVNVFSKWFRVATSDGKKSYAQLFEDN 179 Query: 145 EKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 204 + V+ K GT++ + PD + L ++ +A K Sbjct: 180 MSKKSNPVISNTPKEF-GTTIAWIPDYARLGVKGLDQNNLL-MIYRRAFEVAACNPRLKV 237 Query: 205 EINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLT 264 +N + R DY + E+ +W++ P G + Sbjct: 238 VLNGKQIRIDRFGHFVDY----------------FHAGSAVDESGEWSVAVAPSSGTFMH 281 Query: 265 ESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKM 324 SYVN I T GG HV+ + ++ A+R +L I + + ++ + Sbjct: 282 ASYVNSIATHIGGPHVDYVADQIVAAIRPQLVK----KFKTELKPAVIKNHMSLFIAADI 337 Query: 325 QDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQ--AAELLAEMAISSAQRRMRA 382 +P+F QTKER+++ S D I + V ++ LA + Sbjct: 338 NNPRFDSQTKERMTTPVSQFGTSYKPSDKLIRKALEFVMAGLSKELASLRNEQDDAEFEK 397 Query: 383 AKKVVRKKLTSGPALPGKLADCTAQ-DLNRTELFLVEGDSAGGSAKQARDREYQAIMPLK 441 AKK + K+ K TA+ D + L L EGDSA ARD + + PL+ Sbjct: 398 AKKDISKRDYREI---EKYYPATARGDRSGCSLLLTEGDSASNPILNARDTKKIGLFPLR 454 Query: 442 GKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATL 501 GK +N +V+ ++E ++ G L RY + + DAD DG+HI L Sbjct: 455 GKFINCLNAPRTKVMNNEEFKNLCTIHGGAVPGQPLDISRYPQTVVATDADDDGIHIRGL 514 Query: 502 LCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQ 561 L L+ ++ V+ G + + P R+ GK ++ + E E L + K + Sbjct: 515 LITLYCTYWPEYVRQGRLKLLRTPYMRVWCGKVMHEFMNNAEYEEFL-KTPDAKKITKKK 573 Query: 562 RFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 KGLG + + + + +T+DD Q + ++ R+ W Sbjct: 574 YLKGLGGNSTEDFKRILNNLDAYT-TTVTLDDGYQQSLKNG----FGDEAADYRKTW 625 >UniRef50_B3LD45 DNA gyrase subunit b, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LD45_PLAKH Length = 992 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 176/746 (23%), Positives = 287/746 (38%), Gaps = 182/746 (24%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 + Y+A I +L GLE VR+RPGMY T + + E+IDNSVDE + +++ Sbjct: 109 KDYDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNEIKIVI 168 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN-------------YQ 106 H D+S+ + D+GRG+P DIH + A+E +L LH+G KF +++ Sbjct: 169 HEDESVTIEDNGRGIPCDIHEKTKKSALETVLTVLHSGAKFVDEDTAADLVERTSVGGMS 228 Query: 107 FSGGLHGVGISVVNALSKRVEVNVRRDG------------QVYNIAFE------------ 142 G G SK V + + + + Sbjct: 229 SEIGEDERGGKGEQK-SKAKVVEKLDEKNSKKKNPKEASQKSASQMYRFSSGLHGVGLSV 287 Query: 143 -------------NGEKVQDLQ-----VVGTCGKRNT-----GTSVHFWPDETFFDSP-R 178 G K+ ++ VV R GT +H+ PD F + R Sbjct: 288 ANALSSFMKVKVFRGGKIHSIELEKGKVVTPLSVRECPVSKRGTQIHYKPDHDIFKNTIR 347 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTE---------------------------- 210 + + + + A L + F DE + + Sbjct: 348 HNAELIKNRIHQLAYLNDRLTFYFYDERSAKKVPTSVHLAKGNEADEVDKREDKTTDAVN 407 Query: 211 -------------QRWCYQDGLNDYLAEAVNGLPTLPE---KPFIGNFAGDTEAVDWALL 254 + ++ GLN+Y+ +L + K + +D + Sbjct: 408 TTVEHNNLDFYPYEVIKHEGGLNEYMESLTKNKASLFKDSNKIISISCHQKNVHIDLRIK 467 Query: 255 WLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWD 314 W S+VN + T GGTHV+ ++ + + + V + E I + Sbjct: 468 WTQGQYHEHIVSFVNNVNTTDGGTHVDAMKYAISRCVNFNIKKNEATKNFVNIPGEYIRE 527 Query: 315 RCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAIS 374 +LS+KM +P+F GQTK +L S + + + + + A+ Sbjct: 528 GMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFEKLSEIFDFEPNLLNTIYLKALQ 587 Query: 375 SA--QRRMRAAKKVVRKKLTS--GPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR 430 + +AA+ ++R K LPGKL DC + D+NR E+F+VEGDSA GSAKQAR Sbjct: 588 AKASDEEAKAARDLIRSKNNQYYSTILPGKLVDCISDDINRNEIFIVEGDSAAGSAKQAR 647 Query: 431 DREYQAIMPLKGKILNTWE-VSSDEVLASQEVHDISVAIGIDPDSDDLS----------- 478 +RE QAI+PLKGKILN + ++ + + E+ + AIG+ D+ Sbjct: 648 NREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITAIGLSISCDNSKMAKGKNMLNNK 707 Query: 479 -----------------------------------QLRYGKICILADADSDGLHIATLLC 503 LRYGKI I+ DAD DG HI LL Sbjct: 708 KKDIKKKYDLKCSKKENVQVNNAMVNKKKNTLFDTPLRYGKIIIMTDADVDGEHIRILLL 767 Query: 504 ALFVKHFRALVKHGHVYVALPPLYRIDLG----------------------KEVYYALTE 541 + + ++++G+V+VA PPLY++ K + + ++ Sbjct: 768 TFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDNTIKETVMKQFNVSTRNSKTLIHTYSD 827 Query: 542 EEKEGVLEQLKRKKGKPNVQRFKGLG 567 +E +L L++ + QR LG Sbjct: 828 DELNVLLGLLEKDRSSHAEQRSVELG 853 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 3/69 (4%) Query: 556 GKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDR 615 + +QRFKGLGEM QL TT+DP+ R+L+++T++ D R + ++ L+ + S+ R Sbjct: 924 KRYEIQRFKGLGEMMADQLWSTTMDPSVRKLIRVTVN--DAMRANNLIFSLMGED-SKLR 980 Query: 616 RNWLQEKGD 624 ++++ E Sbjct: 981 KSFILENSP 989 >UniRef50_Q9X3Y5 DNA gyrase subunit B (Fragment) n=740 Tax=cellular organisms RepID=GYRB_BACMY Length = 404 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 144/407 (35%), Positives = 221/407 (54%), Gaps = 10/407 (2%) Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG 154 HAGGKF Y+ SGGLHGVG SVVNALS +EV V RDG+++ +E G DL+V+G Sbjct: 1 HAGGKFDGGGYKVSGGLHGVGASVVNALSTELEVFVHRDGKIHYQKYERGVPAADLRVIG 60 Query: 155 TCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT-EQR 212 + TGT F PD F ++ + L ++ A L +++T +D+ + ++ Sbjct: 61 ETDR--TGTITRFKPDSEIFTETTEYEFDTLATRMRELAFLNRNIKLTIEDKREHKQKKE 118 Query: 213 WCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIP 272 + Y+ G+ Y+ + E+P + + D V+ AL + EG S+ N I Sbjct: 119 FHYEGGIKSYVEHLNRSKQPIHEEPVYVDGSKDGIQVEVALQYN-EGYTNHIYSFTNNIH 177 Query: 273 TMQGGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAG 331 T +GGTH G + L + ++ NIL L+ ED+ + ++S+K +PQF G Sbjct: 178 TYEGGTHEVGFKTALTRVINDYGRKNNILKDADSNLTGEDVREGLTAIVSIKHPNPQFEG 237 Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEM---AISSAQRRMRAAKKVVR 388 QTK +L + + V +AF +L +N A + + A + +A + R Sbjct: 238 QTKTKLGNSEARTITESVFSEAFEKFLLENPNVARKIIDKGTMAARARVAAKKARELTRR 297 Query: 389 KKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW 448 K +LPGKLADC+++D +E+++VEGDSAGGSAKQ RDR +QAI+PLKGKI+N Sbjct: 298 KSALEVSSLPGKLADCSSKDPAISEIYIVEGDSAGGSAKQGRDRHFQAILPLKGKIINVE 357 Query: 449 EVSSDEVLASQEVHDISVAIGIDP-DSDDLSQLRYGKICILADADSD 494 + D++L++ EV I AIG + + + RY K+ I+ DAD D Sbjct: 358 KARLDKILSNDEVRTIITAIGTNIGGDFAIEKARYHKVIIMTDADVD 404 >UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO Length = 1417 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 158/667 (23%), Positives = 290/667 (43%), Gaps = 53/667 (7%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQS 64 ++ L G E VR+R + + H E++ NS+D G + VI H D S Sbjct: 2 ADLKRLKGSERVRKRVSVMMGSDDIRGCQHTLFEIVSNSIDRHRKGFGNYIKVIKHEDLS 61 Query: 65 LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSK 124 +ID G+P+D + +E +L L L+AG + + G++G+G+ S+ Sbjct: 62 YTIIDHADGLPMDWNDKENAYNWDLALKVLYAGDNY--DANSTALGINGLGLCSSQYASE 119 Query: 125 RVEVNVRRDGQVYNIAFENGEKV---------------------QDLQVVGTCGKRNTGT 163 +EV +D + Y + + G + Q + +V + + TGT Sbjct: 120 YMEVVSYKDDKKYTVKCKKGRPIDKNTGEFICEDDDTLFAREQGQRVLLVESNSENKTGT 179 Query: 164 SVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL 223 +H+ PD F + S+ + L +A++ ++I DE + Y+ G+ DY+ Sbjct: 180 YIHYKPDLEVFTNIDISIDWINDKLDKQAMVNKELKIEVYDEKEDKLYTHYYESGIKDYI 239 Query: 224 AEAVNGLPTLPEKPFIGNFAGDTEAVD-------WALLWLPEGGELLTESYVNLIPTMQG 276 ++ + + + VD + + + E Y N +QG Sbjct: 240 K-TISDDNNFSDVIYFTEKGKGRDKVDKPEYDYNYEIALVFNNEINKLEYYHNSSELLQG 298 Query: 277 GTHVNGLRQGLLDAMREFCEYRNI-LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKE 335 G+ + + A+ E+ + N+ K+ DI D V+S +A QTK Sbjct: 299 GSTADAINLAFTYAINEYAKDNNLFNKNESKIKFTDIQDSLICVISSFSTMTSYANQTKL 358 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL---- 391 + ++ F + +K+ L+ +N A + + + + +A K + K Sbjct: 359 SIDNKFIKDFTNQSLKEKLKLYFIENKLEAGRIVNQILINKRANDKAEKTKLNIKKTLQT 418 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVS 451 S CT+ D + TEL+L EG SA GS R+ ++QA + GK+L+ + Sbjct: 419 KSNFDDTDNFYACTSNDKSITELYLAEGSSAQGSIVMGRNSKFQACYHVGGKMLSLLKAD 478 Query: 452 SDEVLASQEVHDISVAIGIDP----------DSDDLSQLRYGKICILADADSDGLHIATL 501 +++ ++ V ++ +G ++ D + L Y KI + D D+D I L Sbjct: 479 FEKIFKNKVVRELFQYLGCGIEIKSKHNKDLNTFDENNLNYSKIILATDQDTDAFQIRCL 538 Query: 502 LCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQ 561 + + L+KHG+VY+A PLY I +VY+A TEEEK +LE+L +K K + Sbjct: 539 MLTAIYRLAPTLIKHGYVYIAESPLYEITTADKVYHAYTEEEKITILEELSKKGIKYDKP 598 Query: 562 -RFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQ 620 R KGLGE++ + ET ++P TR++ ++T+ +D ++ ++ L + R+ + Sbjct: 599 ERNKGLGEVDSDIIAETMMNPKTRKITRVTV--QDVEKMANTFELWLG-DEVKPRKEVIT 655 Query: 621 EKGDMAE 627 D E Sbjct: 656 SNFDYIE 662 >UniRef50_A7ASL8 DNA gyrase subunit B, putative n=1 Tax=Babesia bovis RepID=A7ASL8_BABBO Length = 944 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 160/543 (29%), Positives = 262/543 (48%), Gaps = 75/543 (13%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y+ D I VL GLE VR+RPGMY T + L E++DNSVDE LAG ++ V L Sbjct: 148 SEYSTDDIVVLQGLEAVRKRPGMYIGNTTETGLHQLLFEILDNSVDEYLAGCCNKITVTL 207 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN----------------- 102 AD S E+ D+GRG+P D+ + G +E +L LH+GGKF++ Sbjct: 208 RADGSAEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFNDTTSKPTPEDQVDEFYDT 267 Query: 103 -----------------------KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNI 139 Y+++ GLHGVG+SVVNALS + +V + + Y+I Sbjct: 268 HISRKFRSQHVRGLRKRLKDASSNPYEYASGLHGVGLSVVNALSAWLRADVYKGTKQYSI 327 Query: 140 AFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR---------------FSVSRL 184 G + L V C KR TGT++ F PD F+ + Sbjct: 328 QLSRGMVTEPL-SVSKCAKR-TGTTISFMPDYDHVFIAHHDHQVDTECPGCASAFNHDTV 385 Query: 185 THVLKAKAVLCPGVEITFKDEI------NNTEQRWCYQDGLNDYLAEAVNGLPTLPE--K 236 + ++ + + P + + DE + E+ + ++ G ++L + + L + Sbjct: 386 RNRIEELSYVNPMLTLRLVDERLVNEDGSFHEETFMHKGGTREFLQDIIKDRVPLYKSAN 445 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 V+ +L W E + + N + T GTH+ G + + A+ C Sbjct: 446 IINIRGKSGGVEVEVSLSWAAETYAAQLKGFANNVSTSA-GTHIEGFKAAITKAVNHACR 504 Query: 297 YRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 + + +S E I + ++SVK+ +F GQTK +L ++ V +V Sbjct: 505 RAGLFKHKAPSISGEFIREGLTAIISVKLMGAEFDGQTKSKLGNQIARTAVERIVSYQMN 564 Query: 356 LWLNQNVQAAELLAEMAISSAQR--RMRAAKKVVRKKLTS--GPALPGKLADCTAQDLNR 411 L ++ Q + +I++ + + AK++VR+K + LP KL+DCT+ D+ Sbjct: 565 EILEKHPQLLTAIYNKSIAAKRAFEVAKHAKELVRQKNANFLTTGLPAKLSDCTSNDIGL 624 Query: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD-EVLASQEVHDISVAIGI 470 TELF+VEG+SA G+AKQAR+R +QA++PLKGKILN ++SSD +V+ ++E+ + +IG+ Sbjct: 625 TELFIVEGESAAGNAKQARNRRFQAVLPLKGKILNIEKISSDLKVMENEEIKLLISSIGL 684 Query: 471 DPD 473 + Sbjct: 685 AVN 687 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 39/185 (21%) Query: 480 LRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRID---LGKE-- 534 LRYGKI +L DAD DG H+ LL L + L +HG VY+A PPLYRI G + Sbjct: 758 LRYGKIILLTDADVDGAHLRILLLGLLFRICPQLYEHGRVYIACPPLYRITNMRKGNKAR 817 Query: 535 -------VYYALTEEEKEGVLEQ------------------------LKRKKGKPNVQRF 563 YA +EEE + + VQRF Sbjct: 818 NGPNASAYTYAWSEEELPIAINKEMAPYNLDSVPSEDIADTEQTPEIKPDSMRGITVQRF 877 Query: 564 KGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG 623 KGLGEM QL +TT++P+ R L ++++ +D R M+++L+ + R+ ++ Sbjct: 878 KGLGEMMAQQLWDTTMNPDKRILRRISV--QDGMRASKMLELLMGGD-VQSRKEFIFTHA 934 Query: 624 DMAEI 628 D ++ Sbjct: 935 DAFQL 939 >UniRef50_Q44272 DNA gyrase subunit B (Fragment) n=2942 Tax=cellular organisms RepID=GYRB_ACIG9 Length = 390 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 147/393 (37%), Positives = 215/393 (54%), Gaps = 10/393 (2%) Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNT 161 + +Y+ SGGLHGVG+SVVNALS+++E+ + R G+++ + +G+ L+VVG + T Sbjct: 1 DNSYKVSGGLHGVGVSVVNALSEKLELTIHRAGKIHEQEYRHGDSQYPLKVVGDTNR--T 58 Query: 162 GTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLND 221 GT V FWP F F+V L L+ + L GV I +DE N E + Y+ GL++ Sbjct: 59 GTRVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERINAEHVFDYEGGLSE 118 Query: 222 YLAEAVNGLPTLPEK-PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHV 280 ++ G L + F A + V+ AL W + + N IP GGTH+ Sbjct: 119 FVKYINEGKTHLNDIFHFTAAQADNGITVEVALQWNDS-YQENVRCFTNNIPQKDGGTHL 177 Query: 281 NGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS 339 G R L + + + NIL + V +S +D + ++SVK+ DP+F+ QTKE+L S Sbjct: 178 AGFRAALTRGLNNYMDSENILKKEKVAVSGDDAREGLTAIVSVKVPDPKFSSQTKEKLVS 237 Query: 340 RQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAA---KKVVRKKLTSGPA 396 + V + AF +L +N QAA+ +A I +A+ R A + RK Sbjct: 238 SEVKTAVEQAMNKAFSEYLLENPQAAKAIAGKIIDAARARDAARKAREMTRRKSALDIAG 297 Query: 397 LPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVL 456 LPGKLADC +D +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN D ++ Sbjct: 298 LPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVERARFDRMI 357 Query: 457 ASQEVHDISVAIGIDPD--SDDLSQLRYGKICI 487 +S EV + A+G + +LRY KI I Sbjct: 358 SSAEVGTLITALGCGIGREEYNPDKLRYHKIII 390 >UniRef50_UPI0001976865 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Bacillus subtilis subsp. subtilis str. NCIB 3610 RepID=UPI0001976865 Length = 638 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 160/643 (24%), Positives = 282/643 (43%), Gaps = 35/643 (5%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDT-TRPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 MT T N D I+ L E R + ++ + H +E++ N DE + + + V L Sbjct: 1 MTTT-NQDKIKRLDDREKSREKIAIWYGSADNYYHGLKEILANGTDEVINNFDEGI-VTL 58 Query: 60 ---HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGI 116 Q++ V D GRG+P+D +GV EL+ L A K+ Q + G +GVG Sbjct: 59 ELFDDLQTVRVTDTGRGIPID-GETDGVKNYELLFRTLFASTKYETSE-QTTTGTNGVGA 116 Query: 117 SVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS 176 +V+N S + DG + + FENG ++ + GT + F D + Sbjct: 117 TVLNFTSLFFHIESYYDGYKHALKFENGGELVQDLTKEKISEDRHGTVITFKLDPEVYPV 176 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEK 236 + + +++ A+ +++ F N E+ + Y+ + +Y E + T P Sbjct: 177 VTYDKDVVREIVRRFAIGSHKIKLIFI--HNGEEETFHYES-VEEYFEELIGSTTTSPVI 233 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCE 296 + + L + + ESY+NL GG+ +G+ G+ ++ Sbjct: 234 TAPESLYEEDGERTQIKLTFSTTTDPIQESYLNLTYLSDGGSFNDGVITGIKTFCNKYAR 293 Query: 297 YRNILPRGVK-LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFI 355 + P+G+ + EDI ++VL +F QTK + Sbjct: 294 ENKLFPKGINSFTTEDIESSVSFVLVALSNKVEFKNQTKLSTDKKLYRKLAQRHTTQLLE 353 Query: 356 LWLNQNVQAAELLAE------MAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 409 ++ +N + + + +Q+ + KK + +K+ L DC + Sbjct: 354 VFQIENEKGFKKFVNHLLEVQKHNTQSQKAKQQLKKKLSEKVDGIGNKVANLVDCK-KHG 412 Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 +E+F+ EG SA GS ARD YQA PL+GKILN + + +Q + D+ +G Sbjct: 413 KDSEIFIAEGQSALGSIVLARDAVYQAAYPLRGKILNCLKADYTTIFKNQIITDLIKVLG 472 Query: 470 IDP---------DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVY 520 D+ +++ LRYGKI I D DSDG IA L+ + + L++ G+VY Sbjct: 473 CGIQTDKKNKDLDTFNINNLRYGKIIIATDQDSDGAQIACLIITMIYRLMPKLIEEGYVY 532 Query: 521 VALPPLYRID-LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTL 579 +A PLY I + Y +E EK+ ++ KGK + R KGLGE++ + + ET + Sbjct: 533 IAQTPLYEIKLEDDSMIYFYSESEKDQ---KINTLKGKYTIARCKGLGELDAVTMAETAM 589 Query: 580 DPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEK 622 + TR L+++T+ ED + ++ + ++RR ++ E Sbjct: 590 NEETRNLIKVTV--EDAENMIESLETWMGS-SVDNRREYISEN 629 >UniRef50_A3Q8K7 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Mycobacterium RepID=A3Q8K7_MYCSJ Length = 677 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 180/674 (26%), Positives = 275/674 (40%), Gaps = 55/674 (8%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEAL--AGHAKRVDVILHA 61 +Y A I L ++ R RP + N +E+IDN+++E + V + LH Sbjct: 2 SYTAADITELDDVQHTRLRPAVNLGLDVLNTALRELIDNAIEEVADPSHGGSAVTITLHD 61 Query: 62 DQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF--SNKNYQFSGGLHGVGISVV 119 D S+ V DDGRG+PVD P G + L AGGKF GL+G+G + Sbjct: 62 DGSVGVADDGRGLPVDSDPVNGKNGIVKTLGTARAGGKFSAHTDAASTGAGLNGIGAAAA 121 Query: 120 NALSKRVEVNVRRDGQVYNIAFENGEK------------------VQDLQVVGTCGKRNT 161 +S R +V VRR G+ Y +F G Q L+ G Sbjct: 122 VFISARTDVTVRRAGKTYLQSFGRGYPGVFEGKDFDPDAPFTRADTQKLRGTGNRKPDVH 181 Query: 162 GTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ-------RWC 214 GT+V D + + + A A + PGV ++ DE ++ + Sbjct: 182 GTTVRILFDPAVVPDSQIDIGEVLLRAHAAARMSPGVHLSVIDEGWPGDEVAPALLEPFT 241 Query: 215 YQDGLNDYLAEA-VNGLPTLPEKPFIGNFAGDTEAVD--WALLWLPEGGEL---LTESYV 268 G + L P + G+ W G ++ Sbjct: 242 GPWGTDTLLDLMCTAAGTPAPGVRAVVEGRGEYTTGRGPTPFRWSLTAGPAEPATVAAFC 301 Query: 269 NLIPTMQGGTHVNGLRQGLLDAMREFCEYR---NILPRGVKLSAEDIWDRCAYVLSVKMQ 325 N + T GG+H+ +GL +A+ + + A+D A + + Sbjct: 302 NTVRTPGGGSHLTAAMKGLSEALADRASRMRDLGLAKGEEGPEAQDFAAVTALAVDTRAP 361 Query: 326 DPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ--NVQAAELLAEMAISSAQRRMRAA 383 D + Q K +SSR ++ V + +W N A L ++A+ SA+ R A Sbjct: 362 DVAWDSQAKTAVSSRSLNVAMAPDVARSVTIWAANPANGDAVSLWTKLALESARARRSAE 421 Query: 384 KKVVRKKLTSGPA-------LPGKLADCTAQDL-NRTELFLVEGDSAGGSAKQARDREYQ 435 R + S LP KL + ELFL EGDSA G+ K ARD +Q Sbjct: 422 GAKARSRAASKAKGLGTNLSLPPKLLPSRETGRGSGAELFLCEGDSALGTIKAARDATFQ 481 Query: 436 AIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP-DSDDLSQLRYGKICILADADSD 494 A PLKGK N + + ++ A E I +G D+ D RY +I +DAD D Sbjct: 482 AAFPLKGKPPNVYGFALNKARAKDEFDSIERILGCGVRDNCDPELCRYDRILFASDADPD 541 Query: 495 GLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK-R 553 G +I + L ++F+ +R LV+ G VYV LPPL+ + G + Y E E++ + ++K Sbjct: 542 GGNINSSLISMFLDFYRPLVEAGMVYVTLPPLFVVKDGTQRIYCQDESERDAAVAKMKAT 601 Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 K K VQR KGLGEM+ T LDP R ++++ DD + + L E Sbjct: 602 SKRKVEVQRNKGLGEMDADDFWNTVLDPQRRTVIRVHPDD----SENKLHHTLFGG-PPE 656 Query: 614 DRRNWLQEKGDMAE 627 RR W+ + + Sbjct: 657 GRRTWMADVASRVD 670 >UniRef50_D2QB32 GyrB2 DNA gyrase subunit B n=8 Tax=Bifidobacterium RepID=D2QB32_9BIFI Length = 778 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 143/456 (31%), Positives = 234/456 (51%), Gaps = 43/456 (9%) Query: 211 QRWCYQDGLNDYLAEAVNG-----------LPTLPEKPFIGNFAGD--------TEAVDW 251 + +C+ G+ D++ G T E+ G+ AVD Sbjct: 321 EEFCHNGGVKDFVDFLSKGEAVSDIWRITGDDTYVEETQAVGEGGELHAQKVTRDCAVDI 380 Query: 252 ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR------NILPRGV 305 A+ W +G + S+VN++ T GG HV+G QG+ +R+ E N+ + Sbjct: 381 AMRWT-DGYDTTMRSFVNVVETPGGGMHVDGFLQGITKQIRKAVEDNARKLKVNLKDSNM 439 Query: 306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ----N 361 K+ +DI V++V++ +PQF GQTK+ L + Q V+ + F + Sbjct: 440 KVERDDIMAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIVTRMTDRQFGEMITGSKRGY 499 Query: 362 VQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVE 418 + + + E + R++A K RK ++P KL+DC + + ELF+VE Sbjct: 500 KEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIVE 559 Query: 419 GDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDL 477 GDSA G+AK AR+ +QA++P++GKILN + S ++L+++E I +G S D+ Sbjct: 560 GDSALGTAKAARNSGFQALLPIRGKILNVQKASLAQMLSNKECAAIIQVVGAGSGASFDI 619 Query: 478 SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI----DLGK 533 Q RY KI ++ DAD DG HI LL LF ++ R L++HGHVY A+PPL+RI Sbjct: 620 EQARYNKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGAHKG 679 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKP--NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 E Y +++E G L +L+RK ++QR+KGLGEM+ QL +TT+DP TR L ++ + Sbjct: 680 EYIYTYSDDELAGKLSELERKHIAYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRM 739 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 ED ++ + + +L+ R+ ++ E D + Sbjct: 740 --EDAEQANEIFSLLMGDD-VPPRKAFIVENADDFD 772 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 102/285 (35%), Positives = 148/285 (51%), Gaps = 32/285 (11%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Y A ++ VL GL+ VR+RPGMY TT H E+IDNSVDEALAG + V Sbjct: 3 KDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGACNHIVVT 62 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 LH+D S+EV D+GRG+PVD+ P+ + VE++L +LHAG KF N +Y SGGLHGVG SV Sbjct: 63 LHSDGSVEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSSV 122 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK------------------------VQDLQVVG 154 VNALS R++V V RDG+ ++++F G +L+++G Sbjct: 123 VNALSSRLDVEVDRDGKTHHMSFHQGHPGVYADADPEHPSPDSPFKRTRKNRPTELEIIG 182 Query: 155 TCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRW 213 + TGT + +W D F D+ FS +L ++ + L PG++IT DE Sbjct: 183 KVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPET--- 239 Query: 214 CYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPE 258 + +++ V T + DT+ + A+ E Sbjct: 240 -GDESIDEMREIDVPADGTSDAVVDATDEVDDTDNIGSAIEGFDE 283 >UniRef50_D2RAT5 DNA gyrase, B subunit, C-terminal domain protein n=10 Tax=Bifidobacteriaceae RepID=D2RAT5_GARVA Length = 792 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 147/475 (30%), Positives = 240/475 (50%), Gaps = 43/475 (9%) Query: 192 AVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGL-----------PTLPEKPFIG 240 +V + +++ + + + G+ D++ G T E+ Sbjct: 316 SVANAQSANSMQNKHHPRVVEFLHNGGVKDFVDFLSKGEAVSDIWRISGEDTYVEETQAV 375 Query: 241 NFAGD--------TEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 + AGD VD A+ W+ G + S+VN++ T GG HV+G QGL +R Sbjct: 376 DSAGDLHAQQVTRKCGVDIAMRWV-NGYDSTIISFVNVVETPGGGMHVDGFLQGLTKQIR 434 Query: 293 EFCEYR------NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 + E N+ K+ +DI V++V++ +PQF GQTK+ L + Q V Sbjct: 435 KAVEDNARKLKVNLKDSNTKIERDDITAGLVAVVTVRIAEPQFQGQTKDVLGTAQVKPIV 494 Query: 347 SGVVKDAFILWLNQ----NVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPG 399 + + F + + + + E +S R++A K RK ++P Sbjct: 495 TKMTDAQFGEMITGSKRGFKEQSSRVLEKIVSEMHARIQARKTKEVTRRKNALESASMPP 554 Query: 400 KLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQ 459 KL+DC + + ELF+VEGDSA G+AK AR+ +QA++P++GKILN + S ++L+++ Sbjct: 555 KLSDCQPGNDDVAELFIVEGDSALGTAKAARNSAFQALLPIRGKILNVQKASLAQMLSNK 614 Query: 460 EVHDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGH 518 E I +G S D+SQ RY KI ++ DAD DG HI LL LF ++ R L++HGH Sbjct: 615 ECAAIIQVVGAGSGASFDISQARYNKIVMMTDADVDGAHIRILLLTLFYRYMRPLIEHGH 674 Query: 519 VYVALPPLYRI----DLGKEVYYALTEEEKEGVLEQLKRKKGKP--NVQRFKGLGEMNPM 572 VY A+PPL+RI E Y +++E G L+ L+ K ++QR+KGLGEM+ Sbjct: 675 VYAAVPPLHRIALAGKRKGEYIYTYSDDELAGKLDDLQAKGIDFNSDIQRYKGLGEMDAD 734 Query: 573 QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 QL +TT+DP TR L ++ + ED Q+ + D+L+ R+ ++ + D + Sbjct: 735 QLADTTMDPRTRMLRRIRM--EDAQQASEVFDLLMGDD-VPPRKQFIVDNADDFD 786 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 97/238 (40%), Positives = 137/238 (57%), Gaps = 28/238 (11%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y+AD++ VL GL+ VR+RPGMY TT H E+IDN+VDEALAG + V Sbjct: 5 KEQYDADSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNAVDEALAGACDHIIVT 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 LH D S+EV D+GRG+PVD+ P+ + VE++L +LHAG KF N +Y +GGLHGVG SV Sbjct: 65 LHDDGSIEVADNGRGIPVDVEPKTKLTGVEVVLTKLHAGAKFGNASYNAAGGLHGVGSSV 124 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK------------------------VQDLQVVG 154 VNALS R++V V RDG+ +++AF G +L+++G Sbjct: 125 VNALSLRLDVEVDRDGKTHHMAFHQGHPGVYSDADPEHPSPASPFKRTRKNKSTELEIIG 184 Query: 155 TCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQ 211 T + TGT V +W D F + FS +L ++ + L PG++IT DE + Sbjct: 185 TVSPKTTGTRVRYWADPEIFNSTAHFSYEQLIARVRQTSFLVPGLKITVIDEHVPEGE 242 >UniRef50_B6XTR9 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=B6XTR9_9BIFI Length = 783 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 142/456 (31%), Positives = 232/456 (50%), Gaps = 43/456 (9%) Query: 211 QRWCYQDGLNDYLAEAVNGL-----------PTLPEKPFIGNFAGD--------TEAVDW 251 + +C+ G+ D++ G T E+ G+ AVD Sbjct: 326 EEFCHTGGVRDFVDYLSKGEAVSDIWRVTGEDTYVEETQAVGDGGELHAQKVTRKCAVDI 385 Query: 252 ALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR------NILPRGV 305 A+ W G + S+VN++ T GGTHV+G G+ +R+ E N+ + Sbjct: 386 AMRWT-NGYDTTMRSFVNVVETPGGGTHVDGYLLGMTKQIRKAIEDNARKLKVNLKDSNM 444 Query: 306 KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ----N 361 K+ +DI V++V++ +PQF GQTK+ L + Q VS + F + Sbjct: 445 KVERDDILSGLVAVITVRIAEPQFQGQTKDVLGTAQVKPIVSKMTDKQFGEMITGSKRGY 504 Query: 362 VQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVE 418 + + + E + R++A K RK ++P KL+DC + + ELF+VE Sbjct: 505 KEQSGRVLEKIVGEMHARIQARKTKEVTRRKNALESASMPPKLSDCQPGNDDVAELFIVE 564 Query: 419 GDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDL 477 GDSA G+AK AR+ +QA++P++GKILN + S ++L+++E I +G S D+ Sbjct: 565 GDSALGTAKAARNSGFQALLPIRGKILNVQKASLSQMLSNKECAAIIQVVGAGSGASFDI 624 Query: 478 SQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI----DLGK 533 Q RY K+ ++ DAD DG HI LL LF ++ R L++HGHVY A+PPL+RI Sbjct: 625 EQARYNKVIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGHVYAAVPPLHRIALTGARKG 684 Query: 534 EVYYALTEEEKEGVLEQLKRKKGKP--NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 E Y +++E G L +L +K+ ++QR+KGLGEM+ QL +TT+DP TR L ++ + Sbjct: 685 EYIYTYSDDELAGKLAELDKKRIGYNEDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRM 744 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 ED ++ + +L+ R+ ++ E D + Sbjct: 745 --EDAEQASRIFSLLMGDD-VPPRKAFIVENADDFD 777 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 97/236 (41%), Positives = 134/236 (56%), Gaps = 28/236 (11%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Y A ++ VL GL+ VR+RPGMY TT H E+IDNSVDEALAG + V Sbjct: 8 KDNYGAGSLTVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGVCNHIIVT 67 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 LH+D S+EV D+GRG+PVDI P+ + VE++L +LHAG KF N +Y SGGLHGVG SV Sbjct: 68 LHSDGSVEVADNGRGIPVDIEPKTKLTGVEVVLTKLHAGAKFGNSSYGASGGLHGVGSSV 127 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK------------------------VQDLQVVG 154 VNALS R++V V RDG+ ++++F G +L+++G Sbjct: 128 VNALSSRLDVEVDRDGKTHHMSFHQGHPGVYTDVDSEHPSPDAPFKRTRKNRPTELEIIG 187 Query: 155 TCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNT 209 + TGT + +W D F D+ FS +L ++ + L PG++IT DE Sbjct: 188 KVSPKTTGTRIRYWADPEIFNDTAEFSYEQLIDRVRQTSFLVPGLKITVIDENIPE 243 >UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 6 RepID=TOP2_IIV6 Length = 1132 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 121/701 (17%), Positives = 241/701 (34%), Gaps = 103/701 (14%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPN--------------------------H 34 M + + L+ ++ V RP + +T P Sbjct: 1 MATSNHKKQYTTLSDIDHVLLRPEVIIGSTVPMEQTEYVVDENFSEILEKQVFVSEALIR 60 Query: 35 LGQEVIDNSVDEALA-----GHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGV----- 84 + EV+ N+VD K + + + D + + +DG+ + + +G+ Sbjct: 61 IFVEVLANAVDNIHRSKGSSTPCKSIKIKIEDDGTTMIHNDGQVIKISKEENDGIEINGK 120 Query: 85 ----PAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEV--NVRRDGQVYN 138 EL+ L + + + + + G +G+G+ N LSK +V + + + Sbjct: 121 KCSVYNHELVFGHLRSSSNYDDTVVRQTSGKNGLGVKCTNILSKSFKVIGVDPENKKKFV 180 Query: 139 IAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRL---THVLKAKAVLC 195 + N K V T + T V + PD + FS + + A+L Sbjct: 181 QEWTNNMKETSGPKVTTSSSKTGYTEVIYCPDFERLGN--FSSDIIGIFRKHVLDVAMLA 238 Query: 196 P--GVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWAL 253 GV + F D+ ++ +DY ++ + + + + + Sbjct: 239 SSEGVSVYFNDKKLPIKK-------FSDYTKLFKLEKESI-------SITEEDGSSEVTI 284 Query: 254 LWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIW 313 ++ G+ S+VN + T GG HV+G + + + + +KLS +D+ Sbjct: 285 AFVERDGKKKPISFVNGLFTKHGGQHVDGWTKPFFANLLSVLNKPSKTYKDLKLSLKDVT 344 Query: 314 DRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI 373 + + + PQF Q K L S + + W + + E + Sbjct: 345 PYFRFFVKSTVDKPQFDCQNKNMLKSPCLKYTIPDKIITKVCKW-TSVQELKQSSFEKLL 403 Query: 374 SSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQA---- 429 + +++ + L + EG SA A Sbjct: 404 KGKDNNIIKTLNDKKRRPKVSVKEYDPANKAGTTLSEKCTLIVCEGLSAKTYAVAGISTG 463 Query: 430 ---------RDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-----SD 475 + R++ I+PL+GK LN ++D+++ + V D+ A+G+ Sbjct: 464 ISFTGTDTKKGRDWFGILPLRGKFLNVRNANNDKMIKNTVVTDLVNAMGLTFGMDYSTQK 523 Query: 476 DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKH--------GHVYVALPPLY 527 L YG I I+ D D DG+HI L+ F HF +L + P+ Sbjct: 524 SRKSLNYGSIIIIPDPDEDGIHIEGLVLNFFHHHFSSLFNPVVPNLKDFPFISSMKIPII 583 Query: 528 RI----DLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNT 583 ++ G+ T E + + ++ FKGLG + + Sbjct: 584 KVIEKPLKGRREIEFFTHEAFHKFKNE-NKWHKNHEIKYFKGLGTTKHEDVPKIF----G 638 Query: 584 RRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD 624 +++V IDD M+ + +++R+ WL++ Sbjct: 639 KKMVVFNIDDN----AHENMEKAFKDEEADERKEWLKQYNP 675 >UniRef50_A1EGM8 DNA gyrase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=A1EGM8_9BACT Length = 428 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 167/433 (38%), Positives = 234/433 (54%), Gaps = 23/433 (5%) Query: 88 ELILCRLHAGGKFSNK----NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFEN 143 E+I+ LHA GKF N+ Y+ SGGLHGVG SVVNALS R+ + ++RDG ++ F Sbjct: 1 EVIMTVLHAAGKFDNETGESAYKTSGGLHGVGASVVNALSTRLTMEIKRDGFTWHQEFRG 60 Query: 144 G-EKVQDLQVVGTCGKRNTGTSVHFWPDETFF------DSPRFSVSRLTHVLKAKAVLCP 196 G E V +L + R GT++ FWPD T F D F R+ L +A L P Sbjct: 61 GGEPVAELAMGKPS--REHGTTIRFWPDPTIFVPEEGQDPLSFDKERVARSLSTRAHLNP 118 Query: 197 GVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWL 256 G+ IT DE + +EQ W + + L + P A DT+ ++ Sbjct: 119 GLAITMIDERDGSEQTWKAES-FAEILDDLATVSSAPVFGPLSETAAVDTDKGRVEVMVA 177 Query: 257 PEGGELL---TESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIW 313 SY N I T QGGTH G+R LL A+ + + +L L+AED+ Sbjct: 178 LRVHAERASTIASYANNIVTPQGGTHEAGMRSALLKAINAYGKTNGLLKE--PLTAEDVQ 235 Query: 314 DRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAI 373 + ++V++ +P FAGQTK++L++ +C V VV +N + A+ L A Sbjct: 236 EGLVAAVAVRVTEPLFAGQTKDKLANTECTGAVMQVVYRLLSKHFEENPKDAKNLINRAA 295 Query: 374 SSAQRRMRAAKK---VVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR 430 +A+ R A K V RK SG LPGKLADC D + EL++VEGDSAGGSAKQ R Sbjct: 296 LAAKARAAAEKARELVERKNPLSGGGLPGKLADCQESDPSLCELYIVEGDSAGGSAKQGR 355 Query: 431 DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDP-DSDDLSQLRYGKICILA 489 DR++QAI+PLKGK LN + + L SQE+ +I+ +G ++ D+S+LRY ++ I+ Sbjct: 356 DRKFQAILPLKGKPLNVMKYDMGKALKSQEISNITTVLGCGVLNTFDISKLRYHRVIIMT 415 Query: 490 DADSDGLHIATLL 502 DAD DG HI TLL Sbjct: 416 DADVDGSHIRTLL 428 >UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924D0A Length = 1315 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 131/680 (19%), Positives = 245/680 (36%), Gaps = 81/680 (11%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 D + +T + + P Y TT E++ Sbjct: 45 EDVYDGMTLHQHILSAPDTYIGTTTVDEVRMFIFDEDNNKIIEDVINYVAGFFKTFDEIL 104 Query: 41 DNSVDEALAGH-AKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + K + + + D + V +DG G+PV IH + + E+I L Sbjct: 105 VNARDHTVRDKTCKNIQITIDRDTGRITVWNDGNGIPVSIHKKYNIYVPEMIFGNLLTSQ 164 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR-------DGQV----------YNIAF 141 + K G G + N SK E++ DG++ Y F Sbjct: 165 NYGKKGKTVGGKNG-YGAKLCNIYSKEFEIHTIGVDKIKEVDGKIVPDENAKKVEYRQTF 223 Query: 142 ENGEKVQDLQVVGT--CGKRNTGTSVHFWPDETFFDSP-RFSVSRLTHVLKAKAVLCPGV 198 +N + T + + PD + R + + ++K + Sbjct: 224 KNNMYDVGKPDINKKISQSSKQFTQISYIPDYEKYGMNGRLTNDMYSLLVKRCYDIAACT 283 Query: 199 EITFKDEINNTE-QRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLP 257 T +N + ++D + Y ++ P + + + + + + Sbjct: 284 PSTVNISVNGCNIKCRKFEDYIRLYYSDDPKEKPKI-------TYEKVNDRWEIGIGFNK 336 Query: 258 EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCA 317 G+ S+VN I T QGGTHV+ + ++ + F + + + I Sbjct: 337 NVGDRYI-SFVNGISTFQGGTHVSHVVNNVVAKVTAFIKKKKEHKDLKII-PATIKQYLT 394 Query: 318 YVLSVKMQDPQFAGQTKERLSSRQCAAF----VSGVVKDAFILWLNQNVQAAELLAEMAI 373 + ++ ++DP F QTKE ++S+ + VK + + L+ E+ Sbjct: 395 FFINCVVEDPGFNSQTKEYMNSKVADWCTCGNMCKDVKCELSDEFIEKLCGNGLMTEVVN 454 Query: 374 SSAQRRMRAAKKVVRKKL--TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR- 430 S + MR K KK+ P L L + +T +F EGDSA Sbjct: 455 MSKFKEMRDLDKTDGKKVGKLKIPKLKDAL-WAGGKKSAKTSIFFTEGDSAQSFVIDGIS 513 Query: 431 --DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI--DPDSDDLSQLRYGKIC 486 +E + PL+GK+LN ++ ++ ++ E +I +G+ D+S+LRYG + Sbjct: 514 VIGQERYGVFPLRGKLLNVRNATAKQIKSNTEFLNIKKILGLKQGVKYKDVSKLRYGSVI 573 Query: 487 ILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGK-----EVYYALT 540 I+ D D DG HI L+ + + L++ G + P+ + V + Sbjct: 574 IITDQDPDGSHIKGLIINMLEYFWPELLQIDGFIKAYNTPIVKAWKKTDKKKASVKQFYS 633 Query: 541 EEEKEGVL---EQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQ 597 E E + K + +KGLG + + +E+ D + L + EDD Sbjct: 634 MSEFEKWRDVEMKGDIKGNGWEYKYYKGLGTSSNKESKESFKDFDN-NLTTFLWEHEDDN 692 Query: 598 RTDAMMDMLLAKKRSEDRRN 617 D+ L +S +++N Sbjct: 693 SVKTDDDVSLDMDKSLNKKN 712 >UniRef50_A5K8Q8 DNA gyrase subunit b, putative n=1 Tax=Plasmodium vivax RepID=A5K8Q8_PLAVI Length = 936 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 152/592 (25%), Positives = 242/592 (40%), Gaps = 113/592 (19%) Query: 92 CRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQ 151 A K ++ Y+FS GLHGVG+SV NALS ++V V R G++++I E G+ V L Sbjct: 215 TPKEAPQKSPSQMYRFSSGLHGVGLSVANALSSFMKVKVFRRGKIHSIELEKGKVVTPL- 273 Query: 152 VVGTCGKRNTGTSVHFWPDETFFDSP-RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE 210 V C GT +H+ PD T F + R + + + + A L + F DE + Sbjct: 274 SVRDCPVSKRGTQIHYRPDPTIFKNTIRHNAEMIRNRIHQLAYLNDRLSFYFYDERAAKK 333 Query: 211 -----------------------------------QRWCYQDGLNDYLAEAVNGLPTLPE 235 + ++ GL++Y+ +L + Sbjct: 334 AAAEAENAANAADLADVADHAGNTAEHNNLDFYPYEVIKHEGGLDEYMESLTKNKASLFK 393 Query: 236 ---KPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 K +D L W S+VN + T GGTHV+ ++ + + Sbjct: 394 DSNKVISITCHHKNVHIDLRLKWTQGEYHEHIISFVNNVNTTDGGTHVDAMKYAISRCVN 453 Query: 293 EFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKD 352 + V + E I + +LS+KM +P+F GQTK +L S + + + Sbjct: 454 FNIKKNEATRNFVNIPGEYIREGMTAILSIKMNNPEFEGQTKTKLGSHFLKPILESAIFE 513 Query: 353 AFILWLNQNVQAAELLAEMAISSA--QRRMRAAKKVVRKKLTS--GPALPGKLADCTAQD 408 + + A+ + +AA+ ++R K LPGKL DC + D Sbjct: 514 KLSEIFDFEPNLLNTIYLKALQAKASDEEAKAARDLIRSKNNQCYATILPGKLVDCISDD 573 Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWE-VSSDEVLASQEVHDISVA 467 +NR E+F+VEGDSA GSAKQAR+RE QAI+PLKGKILN + ++ + + E+ + A Sbjct: 574 INRNEIFIVEGDSAAGSAKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITA 633 Query: 468 IGIDPDSDDLSQ----------------------------------------------LR 481 IG+ ++ LR Sbjct: 634 IGLSVSCENSKIAKGKSTINSKKKDLKKKYDLRSGKKENAQVNNALVSKKKNPLFDTPLR 693 Query: 482 YGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLG--------- 532 YGKI I+ DAD DG HI LL + + ++++G+V+VA PPLY++ Sbjct: 694 YGKIIIMTDADVDGEHIRILLLTFLYRFQKNIIQNGNVFVACPPLYKVTYNRFFDATIKE 753 Query: 533 -------------KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNP 571 K + + +++E +L L + + R LG P Sbjct: 754 TVMKQFNVSTKNSKTLIHTYSDDELNVLLGLLDKDRSSHAEHRSAQLGRGKP 805 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 3/105 (2%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Y+A I +L GLE VR+RPGMY T + + E+IDNSVDE + +++ Sbjct: 51 NDYDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNEIKIVI 110 Query: 60 HADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN 104 H D+S+ + D+GRG+P D+H + A+E +L LH+G KF + Sbjct: 111 HQDESVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFVDDE 155 Score = 78.1 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 3/85 (3%) Query: 540 TEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRT 599 TE + +QRFKGLGEM QL TT+DP R+L+++T+ D R Sbjct: 852 TENADPAANSAFFTFSKRYEIQRFKGLGEMMADQLWSTTMDPRVRKLIRVTVS--DAMRA 909 Query: 600 DAMMDMLLAKKRSEDRRNWLQEKGD 624 + ++ L+ + S+ R++++ E Sbjct: 910 NNLIFSLMGED-SKLRKSFILENSP 933 >UniRef50_Q8GD47 DNA gyrase subunit B (Fragment) n=21 Tax=Bacteria RepID=Q8GD47_9MOLU Length = 393 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 141/396 (35%), Positives = 219/396 (55%), Gaps = 14/396 (3%) Query: 105 YQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEK-VQDLQVVGTCGKRNTGT 163 Y+ SGGLHGVG SVVNALS V+V + R+G+ +++ F +G +L ++G K TGT Sbjct: 1 YKVSGGLHGVGASVVNALSLYVDVVIEREGKKFHMLFSDGGTAQTELAIIGESNK--TGT 58 Query: 164 SVHFWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDY 222 +V F PD F ++ F + + + +K A L G++I+ DE N + + +G+ DY Sbjct: 59 TVRFKPDPEIFKETVTFDYTTIRNKVKQLAYLNKGLKISLNDERINKSVDFHFPNGIVDY 118 Query: 223 LAEAVNGLPTLPEKPFIGNFAG----DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGT 278 + E + F + V+ AL + E E L ++VN I T +GG Sbjct: 119 IREENETKAKINPTIFYVDGKEAGDEGDIEVEIALQYNSEYNENLI-TFVNNINTHEGGA 177 Query: 279 HVNGLRQGLLDAMREFCEY-RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERL 337 H +GLRQ L+ + + E + K S +DI + +LS++ DPQF GQTK +L Sbjct: 178 HEDGLRQALVRIINRYAEKVAQQNKQPQKFSWDDIKEGMICILSIRHTDPQFEGQTKTKL 237 Query: 338 SSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRM---RAAKKVVRKKLTSG 394 ++ V ++ +F +L +N A+ + + +++ + R+ RA ++ RK Sbjct: 238 ANPDAKRVVDAILGKSFEEFLFENPNDAKAILDKNVNAQKARIAAQRAREETRRKGALDT 297 Query: 395 PALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDE 454 +LPGKLADC + D + +EL+LVEGDSAGGSAK R+R +QAI+PL+GK+LN V Sbjct: 298 FSLPGKLADCESNDSSISELYLVEGDSAGGSAKTGRNRHFQAILPLRGKVLNVERVQEVR 357 Query: 455 VLASQEVHDISVAIGIDPDSD-DLSQLRYGKICILA 489 A+ E+ I A+G D DLS++RYGKI I+ Sbjct: 358 AFANTEIKSIVTAVGTGIKEDIDLSKIRYGKIVIMT 393 >UniRef50_Q2JC55 DNA topoisomerase II n=4 Tax=Actinomycetales RepID=Q2JC55_FRASC Length = 658 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 139/389 (35%), Positives = 203/389 (52%), Gaps = 8/389 (2%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y A +I + +GL VRR P MY +T +HL E+IDN+VDE G ++V+LH Sbjct: 13 EYTARSIVLFSGLTAVRRNPSMYIGSTGTEGLHHLVFELIDNAVDEFAVGTCGLIEVVLH 72 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVN 120 AD S V DDGRG+PVD HP+ VPA+++++ LH+GGKF Y+ S GLHGVG+S VN Sbjct: 73 ADGSCSVSDDGRGIPVDEHPDLRVPALQVVMTTLHSGGKFQGDTYRRSAGLHGVGLSCVN 132 Query: 121 ALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFS 180 ALS+ + V V RDG +Y ++ GE + +VGT + GT V F PD FD+ F Sbjct: 133 ALSEWLRVEVHRDGGMYTQSYGRGEPTTTVDMVGTSDR--HGTLVRFRPDMMIFDAAAFV 190 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIG 240 L + A L PG+ + DE +TE+ + Y +G+ +L + + +P I Sbjct: 191 TGVLAARMAELAFLHPGLVLRLVDERTDTEETFDYVEGVKGFLTQRNRDAEVVHPEPIII 250 Query: 241 NFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI 300 +D AL W EG S+VN + T QGG HV+ LR GL A+ + + Sbjct: 251 TAERSDLVLDVALQWT-EGYAEEMSSFVNAVRTDQGGAHVDALRTGLASAINDHASMNRM 309 Query: 301 LPR--GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWL 358 L G +++ DI + V+S++M P+F GQTK RL S + FV V + L Sbjct: 310 LDSFAGERITTNDILEGLTAVVSLRMDSPRFDGQTKRRLQSPEVGPFVRRAVAETVAATL 369 Query: 359 NQNVQAAELLAEMAISSAQRRMRAAKKVV 387 + + A+ + + R+ A Sbjct: 370 RREPGLGARVVARALDATRARLAARLAGR 398 >UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepID=D2XAH7_9VIRU Length = 1089 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 137/667 (20%), Positives = 230/667 (34%), Gaps = 95/667 (14%) Query: 11 EVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVIDNSV 44 L + RP + + + E++ N+V Sbjct: 5 RRLNDFQFALHRPETFLGSIRSLPHERWYWSEEKKTMLFGTLEFPEGLERIFYEIVSNAV 64 Query: 45 DEALAG-----HAKRVDVILHAD-QSLEVIDDGRGMPVDIHP-----------EEGVPAV 87 D K V V L + V +DG + V+ + Sbjct: 65 DNFFRSSVSGIPMKSVKVSLDRETGYCTVWNDGAHISVEKKEYSYTDELGNTSSSLLYPA 124 Query: 88 ELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGE 145 EL A +++ + + G +G+G + + SK V +++ F + Sbjct: 125 ELFFGYSKASTNYNDDEVRKTSGRNGLGAKLTSIFSKHFVVRCFDPEKQRIFQQEFFDNL 184 Query: 146 KVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAK---AVLCPGVEITF 202 + V+ C K+ T V F PD F ++ L + A L G+ +F Sbjct: 185 TRRTPPVIEKCTKKKGWTEVRFLPDFARFGLDGWT-EPLLSRFQKTLRDASLVTGLSASF 243 Query: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGLPTL----PEKPFIGNFAGDTEAVDWALLWLPE 258 E+++ +Q L +Y+A P + E V E Sbjct: 244 N------EEKFSFQ-TLPEYVALFSGSNPNFLCLSSPDSRFALLEKNPELV------PTE 290 Query: 259 GGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAY 318 + + S+VN + + G HVN + +L + + + K S + + Sbjct: 291 PSQETSLSFVNGLE-VFTGVHVNAWKNAVLMPLLKAFNAKQKAEGKPKASMKQLECFFHL 349 Query: 319 VLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQR 378 + + P+F QTK L+S + V + L+ + Sbjct: 350 FVVCDLDKPEFTSQTKHELASPTPK--TTKVSPEQIKK----------LMKWGFVQELSS 397 Query: 379 RMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQA----RDREY 434 R+ K KKL L L EGDSA A +DRE Sbjct: 398 RLDPKKTKKTKKLVLDLTKVDDAQLAGTSRSAECILILTEGDSAKTLAVSGFTSLKDRER 457 Query: 435 QAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQ-LRYGKICILADADS 493 LKGK+LNT + + ++E+ + +G+ S DL + LRYGK+ ++ DAD Sbjct: 458 YGAFALKGKVLNTTNATQKTIGKNKELELLKNVLGL---SKDLGKTLRYGKVLLMCDADE 514 Query: 494 DGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKR 553 DG HI L+ KH+ L++ G V P+ + LGK + + + E L + Sbjct: 515 DGKHIEGLVLNFLHKHYPELLEKGFVQSLRTPILKAFLGKREEWFFSTTKFEEWLSKNPG 574 Query: 554 KKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 K VQ FKGLG P R+ + + D A D+ +K +S Sbjct: 575 HKN-LKVQYFKGLGSSRPEDGRKYLSEQK-------LVSYVADGTEGAWFDLAFSKNKSN 626 Query: 614 DRRNWLQ 620 +R+ WL Sbjct: 627 ERKTWLA 633 >UniRef50_Q56C43 Gp60plus39 DNA topoisomerase subunit n=3 Tax=T4-like viruses RepID=Q56C43_9CAUD Length = 630 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 137/637 (21%), Positives = 245/637 (38%), Gaps = 77/637 (12%) Query: 13 LTGLEPVRRRPGMYTDTT--------------------RPNHLGQEVIDNSVDEALAG-- 50 L+ + +R+RP MY + + E++DNS+DEA+ Sbjct: 30 LSDRDHIRKRPNMYVGSVNREAHERFIMGKFRKVEYVEGLVKIINEILDNSIDEAIRTDF 89 Query: 51 -HAKRVDVILHADQSLEVIDDGRGMP---VDIHPEEGVPAVELILCRLHAGGKFSNKNYQ 106 A R++V + + + D+GRG+P V + VP +G F ++N + Sbjct: 90 KFANRIEVKIDH-NLVTISDNGRGIPQDDVRTPEGKIVPKPVAAWTMAKSGSNFDDEN-R 147 Query: 107 FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVH 166 + G++GVG + N S + I +G + D + T + GT+V Sbjct: 148 VTMGMNGVGSFLTNCYSSIFIGETSNGKRKVTINCTDGAQNMDYR---TSPTKEQGTTVK 204 Query: 167 FWPDETFFDSPRFSVSR---LTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL 223 F PD + F + L A AV P V+ T+ E + + + Sbjct: 205 FTPDFSIFGVDGIDEETKEVIKDRLMALAVAFPSVKFTYNGETLPNKFAMYGAMYGDSTI 264 Query: 224 AEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGL 283 + N + + +S+VN + T GG HV+ + Sbjct: 265 TQTNNK---------------------ISFILASTEDGFKQKSFVNGLDTKNGGVHVDCM 303 Query: 284 RQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSV-KMQDPQFAGQTKERLSSRQC 342 G+ + + +++ + + V+ + P F QTKE+L++ Sbjct: 304 IDGIYAELEPMIKK----KHAIEIPKARVKECLTLVVFLHNFNAPAFDSQTKEKLTNTAG 359 Query: 343 AAFVSGVV-KDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKL 401 + + + + E A+ Q AA +KK Sbjct: 360 EFNNHAGLNYKKIAKQIMDTSEIITPIIESALIRKQAAEAAAITKAKKKAKKAKIAKHVP 419 Query: 402 ADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV 461 A D T LFL EGDSA G + R+ E Q PL+GK LNTW +S ++L ++E+ Sbjct: 420 ASGIDTDGVETTLFLTEGDSAVGQFIECRNEETQGAFPLRGKPLNTWGMSFTDILKNKEL 479 Query: 462 HDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYV 521 ++ + + P D S++ Y I I+ DAD DG I TLL A F + + L + + Sbjct: 480 FELMAILNLHPG--DSSEMAYDNIGIMVDADVDGGDILTLLIAFFSR-WPELFEKKKIRY 536 Query: 522 ALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDP 581 P+ +GK+ + + ++ ++ K V+ KGLG + + L Sbjct: 537 IRTPIIIAKIGKDEKWFYSMDDFVPFRDKAK------EVRYIKGLGSLRKSD-YDRVLGD 589 Query: 582 NTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 + + DD D ++++ + S+ R++W Sbjct: 590 QLKYDTIVLGDDYKD-----VLELCFG-EESDPRKDW 620 >UniRef50_Q76Z86 Topoisomerase II large subunit n=1 Tax=Aeromonas phage Aeh1 RepID=Q76Z86_9CAUD Length = 613 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 156/652 (23%), Positives = 255/652 (39%), Gaps = 85/652 (13%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT--------------------RPNHLGQEVI 40 M+Q + +VL+ E MY +T + EVI Sbjct: 1 MSQEF-----KVLSDKEHCLINTDMYIGSTSTETHDVLVDGKFVQIAYVPGLVKITDEVI 55 Query: 41 DNSVDEALAG---HAKRVDVILHADQSLEVIDDGRGMP---VDIHPEEGVPAVELILCRL 94 DNSVDEA+ HA +++V++ D + V D+GRG+P V VP R Sbjct: 56 DNSVDEAIRTNFEHANQIEVVI-KDNQVSVKDNGRGLPQGMVVTPEGVEVPLPLAAWTRA 114 Query: 95 HAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVG 154 AG FS + + G +GVG ++ N S + N D Sbjct: 115 RAGSNFS--ADRKTIGKNGVGSALTNFFSDSFVGETGNGTNTVTVRCTNN---ADEVSYT 169 Query: 155 TCGKRNTGTSVHFWPDETFFDSPRFSVSR---LTHVLKAKAVLCPGVEITFKDEINNTEQ 211 T + GT+V F PD T F + + L AV P + + N + Sbjct: 170 TKAGKFKGTNVTFVPDFTRFGVFQLDEDFEQVIQSRLLTLAVNFPPITFKY----NGKKV 225 Query: 212 RWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLI 271 + + + + + V + E S+VN + Sbjct: 226 EGKFSKFAAQFGD----------------VVSHNDDNVSL---FFATSEEYRQLSFVNGV 266 Query: 272 PTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVK-MQDPQFA 330 T QGG HV G+ L D + + ++ ++++ I + L ++ + P++ Sbjct: 267 HTKQGGNHVYGVLDSLSDELIPMIKRQH----KIEINKARIKECLLIGLFIRNLVAPKYD 322 Query: 331 GQTKERLSSRQCA-AFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRK 389 GQTKERLSS + A + + + + + A++ + +AA +K Sbjct: 323 GQTKERLSSPWAQIRDHMNLDYKALARKILKTPEVIDPIIASALAKKEAADKAAATKAQK 382 Query: 390 KLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWE 449 K A + +T LFL EGDSA G + R+ E Q PL+GK+LN W Sbjct: 383 KAKKANVAKHVAAAGLGR--LKTMLFLAEGDSAIGPFTRFRNEETQGSYPLRGKMLNVWN 440 Query: 450 VSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDG-LHIATLLCALFVK 508 + EVL ++E+ D+ + ++ S + Y I I+ DAD DG IA L A F K Sbjct: 441 LPDHEVLKNKEIADLLGILNVELRSKEAPA--YTDIAIMTDADQDGKGSIAMLAIAFFYK 498 Query: 509 HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGE 568 + + G +++ P Y GK+ ++ + +E + K+ GK + KGLG Sbjct: 499 FWPHWFEQGRIHIVRTPEYISTNGKKTDWSYSRDEF-----RSKKFDGKWTHRHIKGLGS 553 Query: 569 MNPM-QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + E L Q+ IDD+ T +++ML + R+ WL Sbjct: 554 LTVEGDDCEYKQCIENLVLEQVVIDDQ----TPELLEMLFGDDEHK-RKQWL 600 >UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5CQG8_CRYPV Length = 1797 Score = 365 bits (936), Expect = 4e-99, Method: Composition-based stats. Identities = 87/384 (22%), Positives = 167/384 (43%), Gaps = 18/384 (4%) Query: 257 PEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRC 316 +GG+ S+VN I T++GGTH++ + L++A+ + + +N G+ + + + + Sbjct: 424 SDGGQFQHVSFVNSICTIKGGTHISYVLDPLINAILKKVQTKN--KGGMDVKSNHVKNHI 481 Query: 317 AYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA 376 + + +P F QTKE L+++ + + I + ++ +L + + Sbjct: 482 WIFIKCLIVNPSFDSQTKETLTTKVSKFGSVCTLSEKTINSVVKSSIVENVLMWAQLKQS 541 Query: 377 QRRMRAAKKVVR----KKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR-- 430 + K + +L P L + + L L EGDSA S Sbjct: 542 MELKKKMKSNQKNTVTSRLLGIPKLED-ANEAGGPHSKKCTLILTEGDSAKTSCLAGLSI 600 Query: 431 -DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLS---QLRYGKIC 486 R+Y + PL+GK+LN E S + + + E+ +I +G+ + LRYG + Sbjct: 601 VGRDYFGVFPLRGKLLNVREASFKQQIGNVEIQNILKILGLGIGQKYDNGPVNLRYGSLM 660 Query: 487 ILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDLGKEVYYALTEEEKE 545 ++ D D DG HI L+ L ++ +L+ G + + P+ + G T E E Sbjct: 661 LMTDQDHDGSHIKGLIINLIHYYWPSLIHFRGFLKQFVTPIVKAKKGSNEISFFTLYEYE 720 Query: 546 GVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDM 605 + + +KGLG ++ +E + +DD+D D +DM Sbjct: 721 QWRKNNSSNLNGWRFKYYKGLGTSTDLEFKEYFTKIENHSIEFDWMDDQD----DEAIDM 776 Query: 606 LLAKKRSEDRRNWLQEKGDMAEIE 629 +KKR+EDR+NW++ + ++ Sbjct: 777 AFSKKRTEDRKNWIESYKEGTYVD 800 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 91/256 (35%), Gaps = 42/256 (16%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHL 35 ++ + + T +E + RP Y +T + Sbjct: 29 SKKTVEERYQKKTQIEHILLRPDTYIGSTEFHEQALWVWDDSNMKMVYKTINYVPGLYKI 88 Query: 36 GQEVIDNSVD----------EALAGHAKRVDVILHADQ-SLEVIDDGRGMPVDIHPEEGV 84 E++ N+ D + + V ++ ++ + V +DG G+P++IH E V Sbjct: 89 FDEILVNAADVKAREISTKNNHIFEKCTCIKVEINREKKEITVFNDGEGIPIEIHREHQV 148 Query: 85 PAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD--GQVYNIAFE 142 ELI L + + + +GG +G G + N SK +V + G+++ + + Sbjct: 149 YVPELIFGHLLTSDNYDDNEDRVTGGRNGFGAKLTNIFSKEFKVECGDNNTGRIFKMTWY 208 Query: 143 NGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLC---PGVE 199 + + + + + + F PD + F + + + +L + GV+ Sbjct: 209 DNMSKKSEENIKENYSGKSYVKITFKPDLSRFGNMKDFDDDIISLLNKRVYDISGTSGVK 268 Query: 200 ITFKDEINNTEQRWCY 215 + + + Y Sbjct: 269 VYLNGSLIPIKDFKSY 284 >UniRef50_C3IT50 DNA gyrase subunit B n=3 Tax=Bacillus thuringiensis RepID=C3IT50_BACTU Length = 726 Score = 363 bits (933), Expect = 9e-99, Method: Composition-based stats. Identities = 161/695 (23%), Positives = 280/695 (40%), Gaps = 93/695 (13%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRP---NHLGQEVIDNSVDEALAGHAKRVDV 57 ++Q Y ++I+ L G E VRRRP ++ H E++ NSVDE AG ++D+ Sbjct: 4 LSQNYGNNSIDSLEGAERVRRRPAAVLGSSGIEGARHGVTEIVGNSVDEGTAGFGSKLDI 63 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNK-------------- 103 D S+ + D GRG+P+ + +G+ L+ ++AGGK+ + Sbjct: 64 NYFKDGSISIRDYGRGVPMGYNENKGISNWFLVFNEMYAGGKYKDYQEELRAIKDWSTFN 123 Query: 104 ----NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAF------------------ 141 NY FS GL+G+G + S+ E DG + F Sbjct: 124 PTDYNYLFSIGLNGLGAASTQYTSEFFEAISITDGIATKMEFRGGYPILKDANGNEVHAI 183 Query: 142 --------ENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAV 193 E+G +++ + GT +H+ PD F ++ + V ++ A Sbjct: 184 IGEERLLEEHGIVLKEYVAETYETEEENGTYIHWKPDIRVFSDVDITLGWIKDVCESVAY 243 Query: 194 LCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEA----- 248 G+++ DE +T + ++D + P + T Sbjct: 244 -ISGLDVNLYDEATDTMHEYQS-GTISDLNLILNEKNLVNEDSPSVYEDNDITHGNVKQN 301 Query: 249 ---------VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRN 299 D +++ E G+ + N I M+GG + + D + + Sbjct: 302 NENFIYVFKADVSVVRTREKGKT--VCFHNAIK-MKGGAQYRAVDSAVADFVIGLGNTKG 358 Query: 300 ILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLN 359 VK+ D + V+ + GQTK+ + + ++ + Sbjct: 359 -----VKVVERDFEGKLGVVVKSYSNVASYKGQTKDEVDDNFIYRDLKTIIYRLINTEYH 413 Query: 360 QNVQAAELLAEMAISSAQ---------RRMRAAKKVVRKKLTSGPALPGKLADCTAQDLN 410 + + + + A+ + +R KK R + LP KL + + Sbjct: 414 KGNKDIIEFVDKVLEEAELRITLQEQAKMLREVKKTSRTRKLPEKFLPSKL--FKEKIVK 471 Query: 411 RTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGI 470 ++EL++VEGDSA S K ARD +QAI ++GK+ N + S +++ S+E+ DI +G Sbjct: 472 KSELWIVEGDSAKTSVKNARDPLFQAIYAVRGKVTNALKASFKKLMESEEIRDIFSLLGT 531 Query: 471 DP-------DSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVAL 523 + D+ R+ KI I DAD DG I LL +F ++K G +Y+ Sbjct: 532 GMDVELLDDNEFDIDACRFEKIIIGTDADEDGYQIRVLLFVVFWVLAPEIIKRGMLYIGE 591 Query: 524 PPLYRID-LGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPN 582 P + I E+ YA+ E +K ++ + K R+KGLGE+N L TTL P Sbjct: 592 TPKFGIKLSNGEMVYAINEVDKAEREKEYAGQIVKVE--RYKGLGEVNADVLGFTTLAPE 649 Query: 583 TRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRN 617 TR L+Q+ +D D ++ L K + R+ Sbjct: 650 TRNLIQIKLDPADHI-LSEFVETLFGKDPYKKRKE 683 >UniRef50_B6EUG7 DNA gyrase subunit B (Fragment) n=6 Tax=Actinomycetales RepID=B6EUG7_RHOER Length = 446 Score = 363 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 148/450 (32%), Positives = 206/450 (45%), Gaps = 71/450 (15%) Query: 105 YQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTS 164 Y SGGLHGVGISVVNALS RVE +++R G+ + F V ++V R TGT+ Sbjct: 1 YAVSGGLHGVGISVVNALSTRVEADIKRAGKHWIQNF--NMAV-PDELVEGSNARGTGTA 57 Query: 165 VHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI---NNTEQRWCYQDG--- 218 + FWPD F++ F ++ L+ A L G+ IT KDE E + G Sbjct: 58 IRFWPDPEIFETTEFDFDVISRRLQEMAFLNKGLTITLKDERVTEEELELEALAEGGDTA 117 Query: 219 ----LNDYLAEAVNGLPTLPEKPFIGNFAGDTE--------------------------- 247 + + EA+ G K +G+ Sbjct: 118 ESIDGDSFDDEALEGTEASETKEVTDAESGEDIADDIAPSKPKKLEKKVSYHYPDGLIDY 177 Query: 248 -------------------------AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNG 282 V+ A+ W G + ++ N I T +GGTH G Sbjct: 178 VKYLNKSKSEIHPTIVGFEAKGDDHEVEIAMQWN-SGYKESVHTFANTINTHEGGTHEEG 236 Query: 283 LRQGLLDAMREFCEYRNILP-RGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQ 341 R L M + +L + L+ +D + A V+S ++ DPQF GQTK +L + + Sbjct: 237 FRAALTTLMNRYAREHKLLKEKDPNLTGDDCREGLAAVVSARVGDPQFEGQTKTKLGNTE 296 Query: 342 CAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKLTSGPALP 398 FV V + W + N A+ + A++S+ R+ A K V RK T LP Sbjct: 297 LKGFVQRAVNEHLAFWFDANPAEAKAIVNKAVASSHARVAARKARDLVRRKSATDMGGLP 356 Query: 399 GKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLAS 458 GKLADC +D N ELF+VEGDSAGGSAKQ RD YQAI+PL+GKILN + D VL + Sbjct: 357 GKLADCRTKDPNAAELFIVEGDSAGGSAKQGRDSMYQAILPLRGKILNVEKARLDRVLKN 416 Query: 459 QEVHDISVAIGIDPD-SDDLSQLRYGKICI 487 EV I A+G + D+ +LRY KI + Sbjct: 417 AEVQAIITALGTGINEEFDIEKLRYHKIVL 446 >UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEU4_9VIRU Length = 1103 Score = 360 bits (925), Expect = 8e-98, Method: Composition-based stats. Identities = 131/668 (19%), Positives = 235/668 (35%), Gaps = 77/668 (11%) Query: 6 NADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVID------------------------ 41 + ++VLT + + RPGMY P +EV+ Sbjct: 2 SDQKMQVLTQHDHILARPGMYVGGVEPVEYNKEVMTMTGPKHVKEMMVPALLKIIEEPLA 61 Query: 42 NSVDEALAGH-AKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 N+ D + AK + V S I+ ++ P+ +V L + R G F Sbjct: 62 NASDASQNNPVAKNIKVTTDQRDSSIKIETNTKFVIEYVPDGNDYSVALAVSRFMTGTNF 121 Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRR--DGQVYNIAFENGEKVQDLQVVGTCGK 158 + + F G HG+GI + N SK EV V Q Y+ + N + VV Sbjct: 122 GDDDESFKLGQHGLGIKLTNVFSKYFEVVVHDPSTKQSYHGIWTNNMYTVEKSVVKKASH 181 Query: 159 RNTGTSVHFWPDETFFD----SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWC 214 + S+ F PD +F + + AV P +N + + Sbjct: 182 KTPYVSITFIPDLPYFGLRGPLTAGQWDIIHSQVFDLAVTAP---KHTTVHLNGEKIPF- 237 Query: 215 YQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTM 274 G+ Y+ + +L + T ++ A+ + E + YVN T Sbjct: 238 --KGIKGYIQAVMGD--SLDKICMDKVEVNGTVRLEVAVTIARDHAESIV--YVNGAHTT 291 Query: 275 QGGTHVNGLRQGLLDAMREFCEYR--NILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQ 332 +G + ++ N L + ++ + V + + +F Q Sbjct: 292 RG-------------TIHDYIFKNIANALSKKHNINPSMLRGLLLIVAEAWIPNARFTSQ 338 Query: 333 TKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT 392 KE L + + +FI L + + + ++ + KV + K+ Sbjct: 339 AKEELYTPVSKYGFKWDLSQSFIKSLAK-TDLYTSVVNLLHDKDDKKAQKDMKVGKNKIP 397 Query: 393 SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD----REYQAIMPLKGKILNTW 448 D EL + EGDSA A R+ + PL+GK++N Sbjct: 398 QFAKYDPATKLFKVND---AELLITEGDSAKQLANVGRNAVKRHANMGLYPLRGKLMNAG 454 Query: 449 EVSSDEVLASQEVHDISVAIGIDP-DSDDLSQLR---YGKICILADADSDGLHIATLLCA 504 S + A++E+ ++ +GI P DL+ R Y + I D D DG HI+ L Sbjct: 455 NSSLKALAANKEISELIQILGITPYKKYDLASARALPYRHLVIFTDQDVDGSHISGLCIQ 514 Query: 505 LFVKHFRALVK--HGHVYVALPPLYRIDLGKEV-YYALTEEEKEGVLEQLKRKKGKPNVQ 561 L + +L++ ++ P+ +I GK T+ E ++ K +V+ Sbjct: 515 LIMTLVPSLLEVFPDYIKRFATPILKITSGKHAGKTFYTDAEYREYTDKHPDSKN-ASVK 573 Query: 562 RFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL-Q 620 +KGLG ++ + + + + Q + M + K S +RR +L Sbjct: 574 YYKGLGTSTDKDAKQYFTEWS----KNVITINNTGQPSTEAMKLAFDAKMSAERREYLAN 629 Query: 621 EKGDMAEI 628 + A I Sbjct: 630 QYNPNANI 637 >UniRef50_A6N697 DNA gyrase subunit B (Fragment) n=2 Tax=uncultured bacterium RepID=A6N697_9BACT Length = 440 Score = 357 bits (915), Expect = 1e-96, Method: Composition-based stats. Identities = 140/441 (31%), Positives = 212/441 (48%), Gaps = 27/441 (6%) Query: 88 ELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQ-VYNIAFENGEK 146 E+I+ LHAGGKF + Y +SGGLHGVG+SVV AL+ R+E V R+ + + IA+E G+ Sbjct: 1 EVIMTVLHAGGKFDGEVYDYSGGLHGVGVSVVCALASRLEAQVWRETEGSFTIAYEQGKL 60 Query: 147 VQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 206 VQ L+ GT + FWPD F + ++KA L PG+ + D Sbjct: 61 VQPLRKRPGSKAHPHGTRIKFWPDPEIFGDAVVDFDAVLERCRSKAYLIPGLRVDVIDHR 120 Query: 207 --NNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAV--------------- 249 + + ++GL D L N P +T V Sbjct: 121 LDPPVKHTYTSRNGLVDLLGHLANNPLHKPIIIEGEGTYEETVQVLGDDGIRAQNMERTG 180 Query: 250 --DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILP-RGVK 306 + AL+W G E + VN + T +GGTH+ GL Q L + + E + + Sbjct: 181 RLELALVWT-GGYETQFQLAVNQVTTPRGGTHLTGLNQALSRVVVKAAEGSRVKKAKDPS 239 Query: 307 LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQA-A 365 + +D+ + V+ +++ +PQF GQ KE L + Q V +V W + Sbjct: 240 PNKDDVMEGLCLVMHLQIPEPQFNGQAKEELGTPQAHQLVYQIVARELAKWFETAPRTHV 299 Query: 366 ELLAEMAISSAQRRMRAAK---KVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSA 422 ++ E +++A+ R A + +K ALP KL+D +EL +VEGDSA Sbjct: 300 RVVLEKVMAAARARDAARRSRDMARKKDRNQVLALPAKLSDSYRHYPEESELLIVEGDSA 359 Query: 423 GGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPD-SDDLSQLR 481 G AK RD+ +QA++P++GKILN S+ + ++ EV I A+G+ P D Q R Sbjct: 360 AGPAKAGRDQRFQAVLPIRGKILNAARASAHNLASNAEVTAIFSALGLQPGPKCDPEQRR 419 Query: 482 YGKICILADADSDGLHIATLL 502 Y ++ I+ DAD DG HI TLL Sbjct: 420 YTRVVIMTDADVDGSHIRTLL 440 >UniRef50_Q196X4 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 3 RepID=TOP2_IIV3 Length = 1113 Score = 355 bits (910), Expect = 4e-96, Method: Composition-based stats. Identities = 127/692 (18%), Positives = 216/692 (31%), Gaps = 108/692 (15%) Query: 6 NADAIEVLTGLEPVRRRPGMYTDTTR--------------------------PNHLGQEV 39 N + ++ V +Y T + EV Sbjct: 5 NHQKYTIKNDIQHVLDCSDVYIGDTAPTARSEWMFDDAVNQIVWRPTTTPEALVRIFVEV 64 Query: 40 IDNSVDEALAGH------AKRVDVILH-ADQSLEVIDDGRGMPVDIHPEEGV-------- 84 + N+VD K + V + V +DG+ +PV + + GV Sbjct: 65 LTNAVDNIERSINGGHELCKNIKVDVDLKTGKTSVWNDGQVIPVVKNCDNGVVQPPPPTT 124 Query: 85 -------------PAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVN-V 130 +I + N+ Q S G +GVG+ N S V V Sbjct: 125 EQDRLAYEKLNREYIHTIIFGHFRTSSNYDNETDQVS-GKNGVGVKCTNIFSSWFSVVGV 183 Query: 131 RRDGQ-VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLK 189 D + ++ + + V C + T V + PD F + + + K Sbjct: 184 DPDRKLKFSQEWRSNMTKSGAPQVVKCALKTGYTLVEYVPDFARFKLKSY-PEDVESIFK 242 Query: 190 AKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAV 249 V N Y N T + I Sbjct: 243 KLVVDASAFFPNTAFFFNGERTVV---KNAVAYAKLYYNLNETAVDSVVIDYK------- 292 Query: 250 DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSA 309 D ++ + L S+VN T GG HV + + A+ + V L+ Sbjct: 293 DSKVVVVGSATPLPPVSFVNGQITPAGGQHVTNWSRVIFGALLAALN----GKKNVSLTK 348 Query: 310 EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLA 369 DI + K+ P+F GQ K L S + A + + + W + + Sbjct: 349 ADIAPYFQLFIHSKVSKPKFDGQNKNCLKSPKVEAHLDATILKKMLKW-----KIISTIQ 403 Query: 370 EMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQA 429 + + S + + R + + L + EG SA A Sbjct: 404 DKVVKSKEYLALKKIECRRTPIVKVDGYDQANRLGP-----DSVLIVCEGLSAKSYAVAG 458 Query: 430 --------RDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSD-----D 476 + R Y I+PL+GK LN + ++ ++ V D + + + D + Sbjct: 459 IQKGLFNKKGRTYFGILPLRGKFLNVKNTTPLKIGQNKVVSDFIKVLNLKFNLDYRKATN 518 Query: 477 LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALV-KHGHVYVALPPLYRI-DLGKE 534 + L YG + IL DAD DG+HI L+ L + F L + G +Y P+ +I + Sbjct: 519 YATLNYGTLLILTDADKDGIHIKGLILNLIHELFPTLFHRQGFIYSMETPIVKILHKKGQ 578 Query: 535 VYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDE 594 E E Q K + +KGLG + P + R Sbjct: 579 PTLFYDENSFEDWRAQHPELKH---FKYYKGLGTIGPADVAAFFGSKVVRY--------H 627 Query: 595 DDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 D+ TDA ++ + + + +R+ WL Sbjct: 628 YDEATDAAVNSVFKDENANERKEWLGRFNPRV 659 >UniRef50_Q6UGM9 DNA gyrase B subunit (Fragment) n=1 Tax=Fusobacterium necrophorum subsp. necrophorum RepID=Q6UGM9_9FUSO Length = 403 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 137/404 (33%), Positives = 201/404 (49%), Gaps = 10/404 (2%) Query: 101 SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCG-KR 159 N NY+ SGGLHGVGISVVNALS+ EV V+R+G VY + G+ V+D++++ T Sbjct: 1 ENDNYKVSGGLHGVGISVVNALSEWTEVKVKREGNVYYQKYLRGKPVEDVKIISTLEVGE 60 Query: 160 NTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEIN--NTEQRWCYQD 217 TGT V F PD F++ F L H LK A L G+EI D N ++ + + Sbjct: 61 TTGTIVTFKPDIEIFETVIFEYEVLQHRLKELAYLNRGLEINLLDCRNEIGKKESFQSEG 120 Query: 218 GLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGG 277 G++D+L E TL K + VD A + E + + N I +G Sbjct: 121 GISDFLKEVTRENQTLLSKQIHIEGQAEQVGVDIAFTYTTGQSE-VIYFFCNNIQYYRGR 179 Query: 278 THVNGLRQGLLDAMREFCEYRNILP-RGVKLSAED-IWDRCAYVLSVKMQDPQFAGQTKE 335 + + + E I +G K++ + K + GQTK Sbjct: 180 LSCDWISNLFNKGLLMILEKAGIFEGKGWKITRRRTFGKELGLLFRSKFHNRNLEGQTKT 239 Query: 336 RLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVV---RKKLT 392 +L + + V+ V+ ++L N +L+ E +SS + R A + RK + Sbjct: 240 KLGNSEVNGIVNTVLSTDLKIFLEDNPNDTKLIIEKILSSKKAREAAQRAREAVLRKSVL 299 Query: 393 SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSS 452 +LPGKLADC+++ E+FLVEGDSAGGSAKQ RDR +QAI+PLKGKILN + Sbjct: 300 EVGSLPGKLADCSSKKPEECEIFLVEGDSAGGSAKQGRDRYFQAILPLKGKILNVEKAGL 359 Query: 453 DEVLASQEVHDISVAIGIDPDSDDL-SQLRYGKICILADADSDG 495 + L S E+ + A G + + L ++ GKI ++ DAD DG Sbjct: 360 HKALESDEIRAMVTAFGTNIGEESLIGKIEIGKIILMTDADVDG 403 >UniRef50_Q04PE7 DNA topoisomerase (ATP-hydrolyzing), subunit B n=6 Tax=Leptospira RepID=Q04PE7_LEPBJ Length = 711 Score = 331 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 144/718 (20%), Positives = 283/718 (39%), Gaps = 128/718 (17%) Query: 7 ADAIEVLTGLEPVRRRPGMYTD----TTRPNHLG-------QEVID-------------- 41 + L+ +E VR R GM+ +T H E++ Sbjct: 15 ERNFKKLSNVEHVRMRTGMWLGQNSASTFEQHFFRKNNEGKYEIVHEELEDVPAKLKCLD 74 Query: 42 ----NSVDEALA----------GHAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPA 86 N+VDE ++ V L +D + + + D+GRG+P Sbjct: 75 EACMNAVDEYRKNQKDKTIPEKDKMSKLIVQLSSDRKCVTITDNGRGIPAA--------N 126 Query: 87 VELILCRLHAGGKFSNKNYQFS-GGLHGVGISVVNALSKRVEVNVRRDGQVYNIAF---- 141 E + L G F + Q G +GVGIS+V +S +V +G + F Sbjct: 127 AEGVYLHLMYGENFDDHVKQDHVAGQNGVGISLVRMVSNYFKVKTVNNGSSFKKLFTVHD 186 Query: 142 ------------------------ENGE--------------------KVQDLQVVGTCG 157 E+G+ K + + Sbjct: 187 DVKKQIRSYKLSKEDIERVFLYFDEHGKFTDCNLLTKDQIDKLNSLLKKTNMQESIEKAS 246 Query: 158 KRNTGTSVHFWPDETFFDS--PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCY 215 K + GTSV F + +F++ F+V + L+ A+ PG+E+ F + + ++ Sbjct: 247 KEDHGTSVEFELNPKYFNNLDISFNVDLMKQYLQDIAMTNPGLEVQFVFKGKKEKYKFKK 306 Query: 216 QDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQ 275 L E + + K ++ A L G+ ++VN I Q Sbjct: 307 G------LDEIFSHSDLVYYK---MDYTAPGSASQLHLETYLVIGQNKNLTWVNSIFAPQ 357 Query: 276 GGTHVNGLRQGLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK 334 GG+ + L + D +R+ + + + + D+ + ++ ++ +P+F Q K Sbjct: 358 GGSAIEYLENRICDEVRKKSQIVALEKKLKTSSTRNDVRNCFHMYVNARLLNPRFKSQDK 417 Query: 335 ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSG 394 L + + V ++ + E+ +M + + A+K ++K Sbjct: 418 SYLIN-DLNEDIRNAVDKHLEKFIKKTGLLEEIKLQMEKRTQLKAFEDAQKGLKKASRMN 476 Query: 395 PALPGKLADCTAQDLNRTE-LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSD 453 KL T + + LF+ EGDSA + AR+ + + PL+GK LN +S Sbjct: 477 I---PKLMPPTGKPGDPGRVLFVAEGDSAIAGLRPARNPKLHGLFPLRGKPLNCKGLSIA 533 Query: 454 EVLASQEVHDISVAIGI--DPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFR 511 + +A++E+ +I +G+ D + +L Y K+ I+ DAD DG I +L+ + F +++ Sbjct: 534 KAIANEELKNIVAIVGLPLDQKVKSVDELNYDKVSIITDADFDGYAIRSLMLSFFYEYWP 593 Query: 512 ALVKHGHVYVALPPLYRI-----DLGKEVYYALTEEEKEGVLEQLKRKKGKPN-VQRFKG 565 L + G ++++ PLY + D KE + + +++ E +++++++ G+ +R KG Sbjct: 594 ELFELGFIHISSAPLYEVDVKFGDKKKETVFCIDDKDYEDLIKRVEKNGGEITRKKRNKG 653 Query: 566 LGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG 623 LGE ++ + T+ +TI ++ D + ++ K +E RR+ + E Sbjct: 654 LGETGKEAMKFAVDECMTK----ITIGNKKD--ASKIQNLWFHKDFAEQRRDAISEYA 705 >UniRef50_B4V0A2 DNA gyrase subunit B n=1 Tax=Streptomyces sp. Mg1 RepID=B4V0A2_9ACTO Length = 387 Score = 331 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 120/390 (30%), Positives = 181/390 (46%), Gaps = 18/390 (4%) Query: 1 MTQT---YNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKR 54 M++ Y+A I+VL G E VR+RPGMY +T + EV D +V+E LAG A Sbjct: 1 MSEEDTRYDASHIQVLEGWEAVRKRPGMYVGSTSERGLRQMVFEVADRAVNEVLAGRAAS 60 Query: 55 VDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGV 114 VD+ L D + V DDG G+P+D G P +E +L ++ AG ++ + G GV Sbjct: 61 VDITLMPDGGVCVADDGPGVPIDETEGAGGPGLEALLTQMQAGVGTGGRHD-VTLGFCGV 119 Query: 115 GISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF 174 G +VVNALS R+ VRR+G ++ + G L VGT +GT++ FWPD F Sbjct: 120 GPAVVNALSCRMTAEVRREGVLWVQEYARGVAATPLTEVGTATG--SGTTIAFWPDADIF 177 Query: 175 DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR---WCYQDGLNDYLAEAVNGLP 231 + FS L + A L G+EI+ D E R + G D + Sbjct: 178 GATEFSFDGLEERFREVAFLNQGLEISLTDLRRPDESRSVRLRFPGGTRDLVDFLDGHAA 237 Query: 232 TLPEKPFIGNFAGD---TEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL 288 I D ++ A W GE + S+ N PT+ GGTH G R G+ Sbjct: 238 ASTPVDTIAFECEDPRMGGVMEVAFRWCSCPGERVQ-SFANSRPTV-GGTHAVGFRDGMT 295 Query: 289 DAMREFCEYRNIL-PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVS 347 A+ + + +L P A+ I + V+SVK+ P+F G T+ L + + V Sbjct: 296 AAVTAYAREQGLLTPMDPGFDADRIGEGLTAVVSVKLDRPEFEGSTRGVLGNSEVRDCVG 355 Query: 348 GVVKDAFILWLNQNVQAAELLAEMAISSAQ 377 V+D WL ++ + A + ++ A+ Sbjct: 356 QAVQDHLGRWLKEDRERAAAVIGQSVQGAR 385 >UniRef50_B2ZYK3 Type IIA topoisomerase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYK3_9CAUD Length = 882 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 140/525 (26%), Positives = 224/525 (42%), Gaps = 35/525 (6%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHL---GQEVIDNSVDEALAGHAKRVDVIL 59 Y++ +IE VR P MY L +E++DN DE +A V + Sbjct: 7 TKYDSTSIETQRFPHNVRASPAMYIGGVDAYGLWTVTKELLDNGADEFMAQRNDAVFLHF 66 Query: 60 HADQSLEVIDDGRGMPVDIHP----------EEGVPAVELILCRLHAGGKFSNKNYQFSG 109 AD S V D G G+P + + +P ++ + LH GK+ ++ Y S Sbjct: 67 DADGSYWVWDHGHGIPQGVKTFKLNLNGKVVTQKMPTMQAVFGELHTSGKYRSEAYAVSI 126 Query: 110 GLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDL-----QVVGTCGKRNTGTS 164 G HGVG NA ++ +V +G+ +I F+ GE Q + + T GT Sbjct: 127 GSHGVGSKGTNATAEYFDVWTLYEGRWSSIKFKKGELAQPVKECSAPKLPTGKPLKKGTL 186 Query: 165 VHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLA 224 +HF PD + F F S + + PG+ I + + + G +Y+ Sbjct: 187 IHFKPDASIFSVKSFPPSMAVEWATVMSYMNPGLSIHLSSKKGAK--TYLSKKGPQEYIE 244 Query: 225 EAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLR 284 + L T E+ F + D L + G N + QGG HV+ + Sbjct: 245 HRLAALKTEGER---QMFVHHDDLSDVVLAFTNYDGCD-IRGMTNSVTNGQGGKHVDSVT 300 Query: 285 QGLLDAMREFCEYRNILPRGV-----KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSS 339 + ++ + + + + G D+ + +++ K+ QF+ Q K RL+ Sbjct: 301 GAVYAGLKPWIKTKKVKEDGKVKVVPAFRETDLKEGLVGLVNAKLHKAQFSSQDKARLTD 360 Query: 340 RQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMR---AAKKVVRKKLTSGPA 396 + + F+ + +N A+ L + A + + + + K Sbjct: 361 NRLGKDYEEAITKKFVAFFKENKALAQRLCDRATKLNELKTKFTMSKKAAATLNAVKRNG 420 Query: 397 LPGKLADCTA-QDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEV 455 LP K A + ++ ELFLVEGDSAGGS K AR YQA++PLKGK+LN + + + Sbjct: 421 LPAKYAAFNSDTKVHDRELFLVEGDSAGGSLKDAR-LPYQAVLPLKGKVLNALKDNKGKA 479 Query: 456 LASQEVHDISVAIGIDPD-SDDLSQLRYGKICILADADSDGLHIA 499 L S E+ +I AIG D +D LS+L GKI LAD D DG +A Sbjct: 480 LESDEIINILAAIGYDTKAADPLSKLTVGKIICLADPDPDGPFVA 524 Score = 78.9 bits (193), Expect = 6e-13, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 13/136 (9%) Query: 497 HIATLLCALFVKHFRALVKHGHVYV-ALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKK 555 HI +LL LF K+ L G VYV A P Y I + +T + V +LK+ K Sbjct: 701 HINSLLLGLFYKYLPDLFDKGMVYVSAAPEFYSIYKDQ----LVTGDTLSAVQVKLKKLK 756 Query: 556 GKPN--VQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSE 613 + + KG GE + +R DP TRRL+++ DD+ ++ + E Sbjct: 757 APTSTAIHHLKGWGEASENLMRVLAADPATRRLIKIKAISHDDKVD---FVKVMNED-VE 812 Query: 614 DRRNWLQ--EKGDMAE 627 RR L + E Sbjct: 813 YRRRMLGLPQNAKGDE 828 >UniRef50_C0DAN0 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAN0_9CLOT Length = 422 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 120/405 (29%), Positives = 174/405 (42%), Gaps = 80/405 (19%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Y A+ I++L GLE VR+RP MY T +HL E++DN+VDEALAGH V V Sbjct: 19 KNEYRAEQIQILEGLEAVRKRPAMYIGNTSSAGLHHLVCEIVDNAVDEALAGHCSAVSVT 78 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118 L+ D S+ + D+GRG+PV I + G+ A++++ LHAGGKF + NY+ SGGLHGVG SV Sbjct: 79 LNRDGSVTITDNGRGIPVGIQKKTGLSALQVVFTVLHAGGKFDSSNYKVSGGLHGVGASV 138 Query: 119 VNALSKRVEVNVRRDGQVYNIAFENGEK---VQDLQVVGTCGKRN--------------- 160 VNALS + V VRRDG + ++ G V + V C Sbjct: 139 VNALSLWLRVEVRRDGGTWKQSYSRGVPDGAVTKEEAVRGCATGPLARQDDPIPLTRQDD 198 Query: 161 ------------------------TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCP 196 +GT+V F PD F P F L ++ A L Sbjct: 199 PVPSARNEAPFSPARQGALDTVSVSGTTVTFLPDPEIFRDPVFQYEVLKKRMRETAFLTK 258 Query: 197 GVEITFKDEINNTEQ---------------------------------RWCYQDGLNDYL 223 G+ +T D + + + + GL D++ Sbjct: 259 GLSLTLTDLRADCKHGSNTAATPDATTADAPKSPESSNLPQPTLPRQDHFLCEKGLEDFV 318 Query: 224 AEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGL 283 L + G V++A+ G + S+VN I T +GG+HV G Sbjct: 319 NWLNRDASPLYSEIICGGADSGDIQVEFAIQHTA-GYDQRLYSFVNNISTPEGGSHVTGF 377 Query: 284 RQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDP 327 L+ A+ +L L E++ + V+SV+MQDP Sbjct: 378 HSALVRALNHCARNLKLLKESAPPLCREELTEGLTAVISVRMQDP 422 >UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK44_PARTE Length = 1196 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 142/332 (42%), Gaps = 12/332 (3%) Query: 298 RNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILW 357 + + + L+ ++ +P F QTKE L+++ + V + F+ Sbjct: 5 KKKYKEMKNIKPFQVKSFIKIFLNCQIVNPAFDSQTKETLTTKAQKFGSTFEVSEKFLDE 64 Query: 358 LNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLV 417 + + + + + A S +++ +++ G D ++ + L L Sbjct: 65 IIKKTEIIDNVILQAKSRLNKQLSKQLSAKKQQRLLGIDKLEDANDAGTKNADLCTLILT 124 Query: 418 EGDSAGGSAKQA---RDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS 474 EGDSA A R+ + PL+GK+LN + S ++ + E+ + +G+ + Sbjct: 125 EGDSAKSLAMAGIEIVGRDRFGVFPLRGKLLNVRDASIQMIMKNAEIEQLVKIMGLQFNK 184 Query: 475 --DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVK-HGHVYVALPPLYRIDL 531 ++ LRYG I I+ D D DG HI L+ K + +L K G + + P+ ++ Sbjct: 185 NYENTKSLRYGSIMIMTDQDHDGHHIKGLIINFIEKFWPSLFKMKGFLKQFVTPIIKVTK 244 Query: 532 GKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTI 591 GKE + + E + + + R+ V+ +KGLG + ++ + R V Sbjct: 245 GKEFHSFFSIGEYKKFIAENPRED--YKVKYYKGLGTSTDSEAQQYFSNLTLHRKVFTYS 302 Query: 592 DDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG 623 D D +D++ +K +++ R++WL E Sbjct: 303 DQTD----SDYIDLVFSKTKADQRKDWLSEYS 330 >UniRef50_B5H7D6 DNA gyrase subunit B n=2 Tax=Streptomyces RepID=B5H7D6_STRPR Length = 391 Score = 308 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 111/381 (29%), Positives = 170/381 (44%), Gaps = 16/381 (4%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 Y+A IEVL GLE VR+RPGM+ +T + + EV+ +V+E +AG A V V Sbjct: 5 AHMYDATHIEVLEGLEVVRKRPGMWVGSTGERGLHQMVFEVVGRAVNENVAGRAGSVAVA 64 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN-KNYQFSGGLHGVGIS 117 L D + V DDG G+P + E P +E +L R+HA + S +G+G+ Sbjct: 65 LMPDGEVRVTDDGPGVPAEAVGEAVGPCLEDMLTRIHAQQDAGGRRAIAVSPLGNGLGLG 124 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 V NAL+ + VRRDG + + +G V G +G ++ F PD F++ Sbjct: 125 VPNALASSLTAEVRRDGVRWVQVYASGVAVGPPTAAGPA--VGSGITLAFRPDAGIFETV 182 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE---QRWCYQDGLNDYLAEAVNGLPT-- 232 S L + A L G++I+ DE + E +R+ G D++ G T Sbjct: 183 ECSFDVLAERFRELAFLNRGLDISLSDERSAGECRSERFHSPGGTRDFVLLLGEGRGTGA 242 Query: 233 -LPEKPFIGNFAGDT--EAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLD 289 + AV+ AL W E +Y N PT +GGTH G R G+ Sbjct: 243 LVQTDVIGFEREDPRMAGAVEVALQWRDSD-EERVRTYANSRPTPEGGTHAEGFRDGVAA 301 Query: 290 AMREFCEYRNIL-PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSG 348 A+ + R +L L A+ I V+SVK+ P F G T L + + V Sbjct: 302 AVNAYARQRRLLTSADADLGADRIGKGLTAVVSVKLDQPGFRGATCAELDNTEARFGVEE 361 Query: 349 VVKDAFILWLNQNVQAAELLA 369 V++ +WL ++ + A + Sbjct: 362 AVREHLGIWLERHPEQAAAVI 382 >UniRef50_Q00942 DNA topoisomerase 2 n=7 Tax=African swine fever virus RepID=TOP2_ASFB7 Length = 1192 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 104/639 (16%), Positives = 204/639 (31%), Gaps = 85/639 (13%) Query: 32 PNHLGQEVIDNSVDEALAGHAKRVDVI---LHADQSL-EVIDDGRGMPVDIHP------E 81 + E+I N+ D A H+K V + D+ + +DG G+P+ H + Sbjct: 54 LLKIFDELIVNATDHERACHSKTKKVTYIKISFDKGVFSCENDGPGIPIAKHEQASLIAK 113 Query: 82 EGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAF 141 V E+ C AG + GG +GVG+ + S+ + Q Y Sbjct: 114 RDVYVPEVASCFFLAGTNINKAKDCIKGGTNGVGLKLAMVHSQWAILTTADGAQKYVQQI 173 Query: 142 ENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF---------DSPRFSVSRLTHVLKAKA 192 + + + R T + P + S + A Sbjct: 174 NQRLDIIEPPTITPS--REMFTRIELMPVYQELGYAEPLSETEQADLSAWIYLRACQCAA 231 Query: 193 VLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWA 252 + G I + D+ T Y + + A Sbjct: 232 YVGKGTTIYYNDKPCRTGSVMALAKM---YTLLSAPNSTIHTATIKADAKPYSLHPLQVA 288 Query: 253 LLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR---NILPRGVKLSA 309 + P+ + S +N + ++ G HV L+ + E + I + K + Sbjct: 289 AVVSPKFKKFEHVSIINGVNCVK-GEHVTFLK----KTINEMVIKKFQQTIKDKNRKTTL 343 Query: 310 EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLA 369 D V+ + ++ GQ K+ LS + + +F+ + Sbjct: 344 RDSCSNIFVVIVGSIPGIEWTGQRKDELSIAENVFKTHYSIPSSFL------TSMTRSIV 397 Query: 370 EMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQA 429 ++ + S ++ + V K + + + L EGDSA + Sbjct: 398 DILLQSISKKDNHKQVDVDK--------YTRARNAGGKRAQDCMLLAAEGDSALSLLRTG 449 Query: 430 R----------DREYQAIMPLKGKILNTWEV--------------SSDEVLASQEVHDIS 465 ++ ++ L G I+N + ++++ ++ + I Sbjct: 450 LTLGKSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTNNKVLQGIV 509 Query: 466 VAIGIDPD-----SDDLSQLRYGKICILADADSDG-LHIATLLCALFVKHFRALVKHGHV 519 +G+D + ++ ++LRYG I D D DG I LL A F + L+ HG V Sbjct: 510 QVLGLDFNCHYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWPQLIIHGFV 569 Query: 520 YVALPPLYRIDLGKEVY--YALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRET 577 L PL R+ + E+E + ++ V+ +KGL + +++ Sbjct: 570 KRLLTPLIRVYEKGKTMPVEFYYEQEFDAWAKKQ-TSLVNHTVKYYKGLAAHDTHEVKSM 628 Query: 578 TLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRR 616 + D + + + SE R+ Sbjct: 629 FKHFDNMVYTFTL-----DDSAKELFHIYFGGE-SELRK 661 >UniRef50_Q8I528 Term=DNA gyrase subunit B;evidence=inferred from direct assay n=3 Tax=Plasmodium RepID=Q8I528_PLAF7 Length = 1006 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 111/415 (26%), Positives = 183/415 (44%), Gaps = 60/415 (14%) Query: 194 LCPGVEITFKDEINNTE-QRWCYQDGLNDYLAEAVNGLPTLP---EKPFIGNFAGDTEAV 249 + +EIT + ++ + ++ GLN+Y+ L +K + + Sbjct: 440 VNKNIEITDYNNLDFYNYEIIKHEYGLNEYITNITKNKTNLFKDNDKIISISCYHKNIYI 499 Query: 250 DWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSA 309 D + WL S+VN + T GGTHV+ L+ + + + ++ V + Sbjct: 500 DLRMKWLSNQYNENIISFVNNVNTTDGGTHVDALKYAVSRCVNYNIKKNEMIKNFVNIPG 559 Query: 310 EDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLA 369 E I + +LSVKM +P+F GQTK +L S + + V+ + + + Sbjct: 560 EYIREGLTAILSVKMNNPEFEGQTKTKLGSHHLKSILESVIFEKLSEIFDFEPNLLSSIY 619 Query: 370 EMAISSA----QRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGS 425 A+ + + + + S LPGKL DC + D++R E+F+VEGDSA GS Sbjct: 620 FKALQAKLSDEEAKAARDLIRSKNNQYSSTILPGKLVDCISDDISRNEIFIVEGDSAAGS 679 Query: 426 AKQARDREYQAIMPLKGKILNTWE-VSSDEVLASQEVHDISVAIGIDPDSDDL------- 477 AKQAR+RE QAI+PLKGKILN + ++ + + E+ + A+G++ + D+ Sbjct: 680 AKQARNREIQAILPLKGKILNVEKIKNNKRIFENSELKSLITALGLNVNYDNKNLKNNNI 739 Query: 478 ----------------------------------------SQLRYGKICILADADSDGLH 497 + LRYGK+ I+ DAD DG H Sbjct: 740 LSNNKKGKNSKKKSDLKNSRFESTQNNNNILNKKKDILVDNTLRYGKVIIMTDADVDGEH 799 Query: 498 IATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLK 552 I LL + + ++++G+VYVA PPLY+I K K+ V +Q Sbjct: 800 IRILLLTFLYRFQKEIIENGNVYVACPPLYKITYNK----FFDNSIKDIVTKQFN 850 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 79/281 (28%), Positives = 123/281 (43%), Gaps = 56/281 (19%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+A I +L GLE VR+RPGMY T + + E+IDNSVDE + V++H Sbjct: 122 NYDAKDIVILEGLEAVRKRPGMYIGNTDVKGLHQILFEIIDNSVDEYNNFECNTIKVVIH 181 Query: 61 ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKN---------------- 104 D S+ + D+GRG+P D+H + A+E +L LH+G KF + Sbjct: 182 KDDSVTIEDNGRGIPCDVHEKTKKSALETVLTVLHSGAKFFDDEMDDEIDNNMNNTGNTN 241 Query: 105 ---------------------------------YQFSGGLHGVGISVVNALSKRVEVNVR 131 Y++S GLHGVG+SV NALS ++V V Sbjct: 242 TSEKNNRDNISNNNNNNNNNKRTKKNSKESAQKYKYSSGLHGVGLSVANALSSFMKVKVF 301 Query: 132 RDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD-SPRFSVSRLTHVLKA 190 R+ ++Y+I E G+ ++L + C GT +H+ PD + F S + + + + + Sbjct: 302 RNNKIYSIELEKGKVTKEL-TITNCPINKRGTQIHYKPDSSIFKSSTKHNSDLIKNRIHQ 360 Query: 191 KAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLP 231 A L + F DE + + G E + Sbjct: 361 LAYLNEKLTFYFYDERSENKNSIYISKGNKS--NEIIKNKK 399 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 553 RKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRS 612 K +QRFKGLGEM QL TT+DP R+L+++T++ D R + ++ L+ + S Sbjct: 934 NFSKKYEIQRFKGLGEMMADQLWNTTMDPTVRKLIRVTVN--DAIRANDLIFSLMGED-S 990 Query: 613 EDRRNWLQEKGD 624 + R+N++ E + Sbjct: 991 KLRKNFILENTN 1002 >UniRef50_Q0QCK3 ParE (Fragment) n=163 Tax=cellular organisms RepID=Q0QCK3_ECOLX Length = 251 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 251/251 (100%), Positives = 251/251 (100%) Query: 290 AMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 349 AMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV Sbjct: 1 AMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGV 60 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 409 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL Sbjct: 61 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 120 Query: 410 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG Sbjct: 121 NRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 180 Query: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 529 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI Sbjct: 181 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRI 240 Query: 530 DLGKEVYYALT 540 DLGKEVYYALT Sbjct: 241 DLGKEVYYALT 251 >UniRef50_P09176 DNA topoisomerase large subunit n=13 Tax=T4-like viruses RepID=TOPL_BPT4 Length = 516 Score = 282 bits (721), Expect = 4e-74, Method: Composition-based stats. Identities = 115/505 (22%), Positives = 203/505 (40%), Gaps = 65/505 (12%) Query: 8 DAIEVLTGLEPVRRRPGMYTDTT--------------------RPNHLGQEVIDNSVDEA 47 + I++L+ +E +++R GMY ++ L E+IDNSVDE Sbjct: 4 NEIKILSDIEHIKKRSGMYIGSSANETHERFMFGKWESVQYVPGLVKLIDEIIDNSVDEG 63 Query: 48 LAG---HAKRVDVILHADQSLEVIDDGRGMP---VDIHPEEGVPAVELILCRLHAGGKFS 101 + A +++V + + + V D+GRG+P V E +P AGG F Sbjct: 64 IRTKFKFANKINVTI-KNNQVTVEDNGRGIPQAMVKTPTGEEIPGPVAAWTIPKAGGNFG 122 Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNT 161 + + +GG++GVG S+ N S + NG + + + + + Sbjct: 123 DDKERVTGGMNGVGSSLTNIFSVMFVGETGDGQNNIVVRCSNGMENKSWEDI---PGKWK 179 Query: 162 GTSVHFWPDETFFDSPRFSV---SRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG 218 GT V F PD F++ S L+ AV+ P ++ TF N + + ++ Sbjct: 180 GTRVTFIPDFMSFETNELSQVYLDITLDRLQTLAVVYPDIQFTF----NGKKVQGNFKKY 235 Query: 219 LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGT 278 Y A+ + E A+ P+G +YVN I T GG Sbjct: 236 ARQYDEHAI---------------VQEQENCSIAVGRSPDG--FRQLTYVNNIHTKNGGH 278 Query: 279 HVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVK-MQDPQFAGQTKERL 337 H++ + + + + + ++ + + V+ V+ M++ + QTKERL Sbjct: 279 HIDCAMDDICEDLIPQIKR----KFKIDVTKARVKECLTIVMFVRDMKNMRLIRQTKERL 334 Query: 338 SSR--QCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGP 395 +S + + + + + N + E A++ +AA+ KK + Sbjct: 335 TSPFGEIRSHI-QLDAKKISRDILNNEAILMPIIEAALARKLAAEKAAETKAAKKASKAK 393 Query: 396 ALPG-KLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDE 454 K C T LFL EGDSA G RD+E PL+GK+LN+W +S + Sbjct: 394 VHKHIKANLCG--KDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYAD 451 Query: 455 VLASQEVHDISVAIGIDPDSDDLSQ 479 +L ++E+ DI G+ + Sbjct: 452 MLKNKELFDICAITGLVLGEKAFEE 476 >UniRef50_A8NKQ4 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NKQ4_COPC7 Length = 919 Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 128/305 (41%), Gaps = 18/305 (5%) Query: 332 QTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKL 391 QTKE L+ + D FI + + + + A A ++M+ A R +L Sbjct: 357 QTKELLTLPSSKFGSKPTISDEFIKKVA-HSGIVDNVLNWAKFKADQQMKRADGTKRSRL 415 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARD---REYQAIMPLKGKILNTW 448 L + + L L EGDSA A R+ + PL+GK+LN Sbjct: 416 LGLAKLSD-ANNAGTRHAQDCTLILTEGDSAKALAIAGLGVVGRDNFGVFPLRGKLLNVR 474 Query: 449 EVSSDEVLASQEVHDISVAIGIDPDSD--DLSQLRYGKICILADADSDGLHIATLLCALF 506 E D+V+ ++E+ +I +G+ + D + S LRYG++ I+ D D DG HI L+ Sbjct: 475 EACHDQVMKNEEIQNIKKIMGLQHNKDYTNTSSLRYGRVMIMTDQDHDGSHIKGLIINFL 534 Query: 507 VKHFRALVK-HGHVYVALPPLY-RIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFK 564 + +L+K + + PL + G +V T E E LE+ + K + +K Sbjct: 535 DHLYPSLLKIPDFLVEFVTPLSGYVKKGNKVKDFFTIPEYEQWLEETPDAR-KWESKYYK 593 Query: 565 GLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD 624 G E RE R + +D+ +KK++++R+ WL++ Sbjct: 594 GFSEDKG--AREYFSKMEKR---FHLHRRKKGTV---NIDLAFSKKKADERKEWLRQYKP 645 Query: 625 MAEIE 629 ++ Sbjct: 646 GTFLD 650 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 94/292 (32%), Gaps = 31/292 (10%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT--------------------------RPNHLGQEVI 40 +D + LT LE + +RP Y + E++ Sbjct: 106 SDHLMTLTQLEHILKRPDSYIGNIEIISTPMWTYDSETIRMVHREVKYVPGFFKIVDEIL 165 Query: 41 DNSVDEALAGH-AKRVDVILH-ADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGG 98 N+ D + + + + + ++ V ++GRG+P++IH +E + E+I L Sbjct: 166 VNAADNKINDPSMDTLKITIDVEEGTISVYNNGRGIPIEIHSKEKMYIPEMIFGHLLTST 225 Query: 99 KFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTC 156 + + + +GG +G G + N S V Q Y + + + Sbjct: 226 NYDDDEKKLTGGRNGYGAKLANIYSLEFTVETADKNTSQKYKQTWTDNMSKCGKAKITKN 285 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQ 216 + T + F PD F + + ++LK + K +N+ + Sbjct: 286 TRGEEYTRITFRPDLKRFGMNSINEDTV-NLLKRRVFDMADTVKDVKVLLNDERLKKLLL 344 Query: 217 DGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYV 268 + + L P + T + ++ G ++ Sbjct: 345 RSREELPNRSKPQTKELLTLPSSKFGSKPTISDEFIKKVAHSGIVDNVLNWA 396 >UniRef50_C9E3K9 DNA gyrase subunit B (Fragment) n=1 Tax=Rhodococcus sp. BX2 RepID=C9E3K9_9NOCA Length = 352 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 132/347 (38%), Gaps = 40/347 (11%) Query: 130 VRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLK 189 VR D + + + ++V + TGT+V FWPD F++ F+ + L+ Sbjct: 6 VRHDKNMTDPLGRTYTNSKPGELVKGEPTKRTGTTVRFWPDPEIFETTTFNFETVARRLQ 65 Query: 190 AKAVLCPGVEITFKDEINNTEQ----------------------------------RWCY 215 A L G+ IT DE E+ + Y Sbjct: 66 EMAFLNKGLTITLTDEGVAPEEVTDEDVPETAEAPKTAEDEAVEAAEPEVHKVKVRTYHY 125 Query: 216 QDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQ 275 GL DY+ + G ++ A+ W G ++ N I T + Sbjct: 126 PGGLEDYVRHINRTKSPIHNSVVGFTAKGTGHELEVAMQWN-SGYSESVHTFANTINTHE 184 Query: 276 GGTHVNGLRQGLLDAMREFCEYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTK 334 GGTH G R L + + + + +L L+ +DI + A ++SVK+ +PQF GQTK Sbjct: 185 GGTHEEGFRAALTTVVNRYAKDKKLLKDKDPNLTGDDIREGLAAIISVKVAEPQFEGQTK 244 Query: 335 ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKK---VVRKKL 391 +L + + +FV + W N A+ + A+SSA R+ A K V RK Sbjct: 245 TKLGNTEVKSFVQKACNEHISHWFEANPADAKTIVTKAVSSAHARVAARKARELVRRKSA 304 Query: 392 TSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIM 438 T GKL ++D + GDS +R + Q Sbjct: 305 TEHRWSAGKLRRLPSKDPSSARSTSWRGDSQVAPQVGSR-LDVQGSF 350 >UniRef50_A3SXB5 DNA topoisomerase IV subunit B n=1 Tax=Sulfitobacter sp. NAS-14.1 RepID=A3SXB5_9RHOB Length = 308 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 101/246 (41%), Positives = 145/246 (58%), Gaps = 9/246 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTD---TTRPNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y+A +I+VL +E VR RPGMY +H+ E+IDNS+DEA+AGHA +++ Sbjct: 12 AKEYDASSIQVLEDMEHVRLRPGMYIGGKDDRALHHMVAEIIDNSMDEAVAGHATWIELE 71 Query: 59 LHADQSLEVIDDGRGMPVDIHPEE-GVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 LH + + V D+GRG+P D HP++ A+E+I C L+AGGKFS +Y+ SGGLHGVG S Sbjct: 72 LHENGHVTVRDNGRGIPTDPHPKDPSKSALEIIFCTLNAGGKFSGDSYETSGGLHGVGSS 131 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS + V V R+ +++ + F G L+ +G R GT+V F PD F Sbjct: 132 VVNALSDHLRVEVARNRELFAMEFSRGIPQGKLEKIGAAPNRR-GTAVTFHPDAEIFGPL 190 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFK----DEINNTEQRWCYQDGLNDYLAEAVNGLPTL 233 + +RL + ++KA L GVEI +K D E + + GL+DYL E + G T Sbjct: 191 KLKPARLFTMARSKAYLFSGVEIRWKCGQQDGDTPQEATFHFPGGLSDYLNETLKGSTTT 250 Query: 234 PEKPFI 239 P P + Sbjct: 251 PSIPLV 256 >UniRef50_B4YQA0 DNA gyrase subunit B (Fragment) n=1 Tax=Lactobacillus jensenii RepID=B4YQA0_9LACO Length = 258 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 74/259 (28%), Positives = 118/259 (45%), Gaps = 5/259 (1%) Query: 128 VNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTH 186 V V RDG+ Y I F++G +L+ +GT GT VHF+PD F ++ F L Sbjct: 1 VTVMRDGKKYFIDFDHGRVKHELKEIGTVDPSQHGTIVHFYPDPDIFTETIVFDDKILKK 60 Query: 187 VLKAKAVLCPGVEITFKDEINN--TEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAG 244 ++ A L G+++TF D+ N + Y+ G+ +Y+A L + P Sbjct: 61 RIQELAFLNKGLKLTFTDKRKNSAETDVYHYEGGIKEYVAFLDEKEEKLFDTPVYVEGDY 120 Query: 245 DTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR- 303 D V+ AL + G + ++ N I T +GG H G + L + ++ I Sbjct: 121 DGINVEVALQYT-TGYKTTMMTFANNIHTYEGGMHEAGFKTALTRVINDYARKAKIFKDS 179 Query: 304 GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQ 363 LS EDI + V+S+K +PQF GQTK +L + A V +AF +L +N Sbjct: 180 DTNLSGEDIREGMTAVISIKHPNPQFEGQTKTKLGNSDARAAVDKAFSEAFSKFLLENPS 239 Query: 364 AAELLAEMAISSAQRRMRA 382 + E + + R+ A Sbjct: 240 VGRKIVEKGQLAEKARIAA 258 >UniRef50_A7XYG8 GyrB (Fragment) n=6 Tax=Chlamydia trachomatis RepID=A7XYG8_CHLTR Length = 393 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 122/220 (55%), Gaps = 13/220 (5%) Query: 393 SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSS 452 LPGKL DC +D + E+++VEGDSAGGSAKQ RDR +QAI+P++GKILN + Sbjct: 1 DSARLPGKLIDCLEKDPEKCEMYIVEGDSAGGSAKQGRDRRFQAILPIRGKILNVEKARL 60 Query: 453 DEVLASQEVHDISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHF 510 +V +QE+ I A+G +LS+LRY +I I+ DAD DG HI TLL F +H Sbjct: 61 QKVFQNQEIGSIIAALGCGIGKDNFNLSKLRYKRIIIMTDADVDGSHIRTLLLTFFYRHM 120 Query: 511 RALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKP----NVQRFKGL 566 AL+++ VY+A PPLYR+ K+ Y L+E+E +G L L K+ + ++ +G Sbjct: 121 SALIENECVYIAQPPLYRVSKKKDFRYILSEKEMDGYLLNLGTKESQIVFDDTLRDLRG- 179 Query: 567 GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDML 606 + ET ++ + ++ +DM Sbjct: 180 ------EALETFVNLILEVESFIVSLEKKAIPFSEFLDMF 213 Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 8/96 (8%) Query: 538 ALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQ 597 T +E L+ + +QR+KGLGEMN QL +TT++P R LV++++ +D Sbjct: 303 CYTLKEVIDYLK--GLGRKGIEIQRYKGLGEMNADQLWDTTMNPEQRTLVRVSL--KDAV 358 Query: 598 RTDAMMDMLLAKKRSEDRRNWLQEKGD---MAEIEV 630 D + ML+ + RR +++ M +++ Sbjct: 359 EADHIFTMLMG-EEVPPRREFIKSHALSIRMNNLDI 393 >UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea RepID=Q27537_CAEEL Length = 842 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 104/255 (40%), Gaps = 13/255 (5%) Query: 375 SAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQAR---D 431 + + G D ++ + L L EGDSA A Sbjct: 20 KQMDDLNQKCPKRKTSKLKGIPKLEDANDAGTKNSQQCTLILTEGDSAKTLAVSGLSVVG 79 Query: 432 REYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGID-----PDSDDLSQLRYGKIC 486 R+ + P + K+LN +++ +++ S EV+ I +G+ DD LRYGK+ Sbjct: 80 RDKYGVFPFRRKLLNVCDLNVNQIADSAEVNAIIKILGLQYTKKYETEDDFKTLRYGKLL 139 Query: 487 ILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEG 546 I+A+ DSDG LL F + + AL K V + P+ + GKE + E Sbjct: 140 IMANHDSDGSQFKGLLLNFFHRFWPALFKRDFVEDFITPIAKATEGKEEVSFYSLPEYSE 199 Query: 547 VLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDML 606 K ++ + GLG + + ++ D R+ + + DD D ++M Sbjct: 200 WRMNTDNWKS-YTIKYYNGLGTLTSKEAKKCFSDMVRHRI-RFKYNGADD---DKAVNMA 254 Query: 607 LAKKRSEDRRNWLQE 621 +KK+ E R ++L + Sbjct: 255 FSKKKIEARTDYLMK 269 >UniRef50_B1N7R8 Gyrase b (Fragment) n=1 Tax=uncultured bacterium RepID=B1N7R8_9BACT Length = 366 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 113/369 (30%), Positives = 171/369 (46%), Gaps = 56/369 (15%) Query: 88 ELILCRLHAGGKFSNKNY-QFSGGL-HGVGISVVNALSKRVEVNV-RRDGQVY-NIAFEN 143 E+I+ LHAGGKF + +Y + SGGL GVG+SVVNALS ++ + + R GQV+ + + Sbjct: 1 EVIMTVLHAGGKFDDNSYTRVSGGLQDGVGVSVVNALSSKLHLIILHRAGQVHEKQEYHH 60 Query: 144 GEKVQDLQV-VGTCGKRNTGTSV-HFWPDETFFDSPR----FSVSRLTHVL-KAKAVLCP 196 G+ L+V +G ++GT+V FWP F F+V L L + + L Sbjct: 61 GDTQYPLRVLIGETD--SSGTTVNRFWPSGLTFSHGECRTIFNVEILARRLLRELSFLNA 118 Query: 197 GVEITFKDEINNTEQRW-CYQDGLNDYLAEAVNGLPTLPEKPFIGN-------------- 241 GV I +DE N E + Y+ GL++++ +N T + F Sbjct: 119 GVRIVLRDERINLEHVYAXYEGGLSEFVKYFINEGKTHLNEIFHFXTADTENGIGVKYIN 178 Query: 242 --------------FAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLR--Q 285 A + AV+ AL W + + N IP GGTH+ G R Q Sbjct: 179 EGKNHLNEIFHFTADADNGIAVEVALQWNDS-YQENVRCFTNNIPQKDGGTHLAGFRALQ 237 Query: 286 GLLDAMREFCEYRNILPR-GVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAA 344 L + ++ E NIL + V ++ +D + ++SVK+ DP+F+ QTKE+L S + Sbjct: 238 ALTRGLNQYLENENILKKEKVNVTGDDAREGLTAIISVKVPDPKFSSQTKEKLVSSEVKP 297 Query: 345 FVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAK------KVVRKKLTSGP--- 395 V + F +L +N QAA+ +A I +A+ R A K RK Sbjct: 298 AVEQAMNKEFSAYLLENPQAAKSIAGKIIDAARARDAARKAREGSYMTRRKSALDIAYPI 357 Query: 396 -ALPGKLAD 403 PGKLAD Sbjct: 358 GLPPGKLAD 366 >UniRef50_B3SFQ4 Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3SFQ4_TRIAD Length = 303 Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 81/205 (39%), Positives = 117/205 (57%), Gaps = 5/205 (2%) Query: 361 NVQAAELLAEMAISSA---QRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLV 417 N + A+ + SA + +A ++ LPGKLA+C +D ++ELFLV Sbjct: 2 NPKDAKTIIGRMAESAIAREAARKARDLSRKQIGNQISTLPGKLANCQEKDPAKSELFLV 61 Query: 418 EGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG--IDPDSD 475 EGDSAGGSAKQ RDR+ QAI+PLKGKILN D++L S E+ + A+G ++ Sbjct: 62 EGDSAGGSAKQGRDRKIQAILPLKGKILNVERARFDKMLNSAEIGTLITALGVVLEDKEF 121 Query: 476 DLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEV 535 DL++LRY KI I+ DAD DG HI TLL F ++ L++ G++Y+A PPLY++ G+ Sbjct: 122 DLTKLRYHKIIIMTDADVDGAHIRTLLLTFFFRYMPGLIEKGYLYIAQPPLYKVKRGQSD 181 Query: 536 YYALTEEEKEGVLEQLKRKKGKPNV 560 Y E L+ + K + Sbjct: 182 TYLKDELALRNYLKSIILKNCTVKI 206 >UniRef50_C5Z2Y6 Putative uncharacterized protein Sb10g016438 (Fragment) n=3 Tax=Sorghum bicolor RepID=C5Z2Y6_SORBI Length = 396 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 73/361 (20%), Positives = 133/361 (36%), Gaps = 80/361 (22%) Query: 267 YVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQD 326 +VN + ++GG + + + E + + ED+ ++ Sbjct: 3 FVNGV-VIEGGVQFD----TITRHVEEHLKSSIKRKMKNVQNIEDVKSHLWAFINADY-- 55 Query: 327 PQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKV 386 P F G+ Q S + K+ F L + + A + I + Q + + Sbjct: 56 PFFYGE-------PQLQVAHSFIFKEIFRCALKETLAWALKEEDENIEANQTKFQ----- 103 Query: 387 VRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILN 446 D + L EGDSA A + R+Y ++ LKGK+LN Sbjct: 104 -------------DATRAGGVDSQKCTLIFTEGDSAKDLALGSVHRDYFGVLALKGKLLN 150 Query: 447 TWEVSSDEVLASQEVHDISVAIGIDP-----DSDDLSQLRYGKICILADADSDGLHIATL 501 + S ++L ++E++++ IG+D D DL LRYGK+ ++ D D DG HI L Sbjct: 151 VRDASLKKILDNEEINNMRKIIGLDYKKHYNDEKDLKDLRYGKVMVMTDQDPDGFHIKGL 210 Query: 502 LCALFVKHFRALVK---HGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKP 558 + LF + +L+K + + PL Sbjct: 211 IINLFHVFWPSLLKIKSKSFLCDLVTPLV------------------------------- 239 Query: 559 NVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNW 618 KGLG + + D + + + +++ED D + +K + E+R+ W Sbjct: 240 -----KGLGTRTLKEGMQYFKDIDIHQKYFVWVNEED----DKAIKTAFSKHKVEERKEW 290 Query: 619 L 619 + Sbjct: 291 I 291 >UniRef50_Q1CZR7 DNA gyrase, B subunit, truncated n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CZR7_MYXXD Length = 361 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 142/365 (38%), Gaps = 28/365 (7%) Query: 16 LEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGR 72 +E VR+RPGMY +HL ++D + +EA G + V + + D S+ + R Sbjct: 11 VENVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSR 70 Query: 73 GMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRR 132 + + L R+ G F + G + + V ALS R +V++ Sbjct: 71 TVTAEN------------LVRVATGAGFLGRPPGDGWGWDSM-LVVSLALSSRYQVDIWA 117 Query: 133 DGQVYNIAFENGEKVQDLQVVGTCGK----RNTGTSVHFWPDETFFDSPRFSVSRLTHVL 188 DG+ + + E+G + V G VHF PD T F+ F +RL+ Sbjct: 118 DGRQWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFVPDATIFEVLAFDRARLSRRC 177 Query: 189 KAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEA 248 A L PG+ ++F D W G+ + P L +P + +F D Sbjct: 178 NELAALAPGLRVSFADLQRGERTLWHLPGGVAQWAHVLTEARPQLHPEPVVFDFTWDGLR 237 Query: 249 VDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLS 308 V AL W + + S+ N + T++ G HV G+ Q L A+ + Sbjct: 238 VQCALQWCEDE-DSTLLSFANAVRTVRHGAHVKGVTQALRGAL-----AKLSGETRGAFP 291 Query: 309 AEDIWDRCAYVLSVKMQ--DPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAE 366 + +++V FAG TKE L+ + ++ FI L ++ Sbjct: 292 WARVAQGLTAIVAVSGPRRQMAFAGPTKELLAIPGLEEAIRKQLQPLFIELLREHPVTPA 351 Query: 367 LLAEM 371 LLA Sbjct: 352 LLARR 356 >UniRef50_UPI00016C4A69 DNA gyrase subunit B n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4A69 Length = 294 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 78/316 (24%), Positives = 118/316 (37%), Gaps = 34/316 (10%) Query: 1 MTQTYN-----ADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHA 52 M YN + V +E +R RP M+ T + L E++++++ A Sbjct: 1 MKCGYNTSDPIEADLPVEAPMEAIRLRPRMFLGGTGSRGLHQLLFELVNDALGPLSGDPA 60 Query: 53 KRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLH 112 V V L AD +E+ DD P V AV + LHA Sbjct: 61 GVVRVALDADGFVEISDDC-------SPPLNVEAVFSRMSGLHAADSR------------ 101 Query: 113 GVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDET 172 SV ALS+ + RR G V F G+ + Q G + G +V F PD Sbjct: 102 ----SVACALSEELTARARRSGAVPQCTFRRGQLHAETQFGGPPD--DCGLTVRFRPDPA 155 Query: 173 FFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPT 232 F + RF + + L+ A L GV I F DE + TE + Y DG+ DY+ Sbjct: 156 IFGAARFDPDIIRNRLQQCAFLNSGVRIAFADESSGTEDVFEYPDGIADYVKWLNTNRTP 215 Query: 233 LPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMR 292 + + + + L W + + L S+ N T GGTH G+R + Sbjct: 216 VHAEVIAFDGEAGGVRYEVGLQWCADA-DALPVSFANGYCTRLGGTHTTGVRAAVKTWCA 274 Query: 293 EFCEYRNILPRGVKLS 308 C + ++ Sbjct: 275 RCCVRSLRAKKSSAMT 290 >UniRef50_Q2SFQ7 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SFQ7_HAHCH Length = 325 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 150/353 (42%), Gaps = 36/353 (10%) Query: 12 VLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVI 68 +L+ + VR+RPGMY NH+ E++ N VD LAG A + V + ++ + VI Sbjct: 1 MLSFKDAVRKRPGMYFGDIDHNAVNHVIYELVANVVDLFLAGRATTLKVDV-SECEIIVI 59 Query: 69 DDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEV 128 DDG G P + VE L H + G+G++ VNA+S+++ + Sbjct: 60 DDGPGFPF-PVEDSAHNLVERYLTHHHDKPTADDHAPHIHVLGGGLGLAAVNAVSEKLTI 118 Query: 129 NVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVL 188 + F G+ + L+ +G+S+ F D + F + +L + Sbjct: 119 ESSNGAWRWRQVFGKGDVLAPLESFRY--DGPSGSSIKFTLDPSVFHNRLPDFFQLRKAM 176 Query: 189 KAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEA 248 A L G+ + F E + + GL + LA + P P + F G TE Sbjct: 177 FELAHLYSGLIVEFDGER------YVSKQGLME-LAYLMWSGPKWAFNPKMFRFKGQTED 229 Query: 249 VDWALLWLPEGGE-LLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKL 307 V + + + +GG +S+VN T + G HVNGLRQ L A P Sbjct: 230 VGFEVAAIGDGGSPPCYKSWVNGCETEEHGAHVNGLRQALNYA--------GWAPD---- 277 Query: 308 SAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQ 360 ++S+ M DP+FAG K R +R+ + ++ + D ++ ++ Sbjct: 278 ---------IALISIVMHDPKFAGPVKSRFCNRRVKSLIAEALADPLKMFKSK 321 >UniRef50_C1ZHM4 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHM4_PLALI Length = 325 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 78/356 (21%), Positives = 143/356 (40%), Gaps = 42/356 (11%) Query: 14 TGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSL-EVID 69 T LE +R+RP MY +T +HL E++DN++D+ LA A V+V H + E D Sbjct: 4 TDLEAIRKRPAMYVGSTDVNGLHHLFNELLDNAIDQYLANQATYVEV--HTSGEILEFTD 61 Query: 70 DGRGMPVDIHPEEGVPAVELILCR--LHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVE 127 DG G+P + + L L ++ + G G G+ ++ AL++ E Sbjct: 62 DGPGLPFEKPGPHSGSLADYYLTHIRLDTPTADNHTPHIHLSGW-GCGLRIITALTETCE 120 Query: 128 VNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHV 187 V R+ + +F G +VG +R GT+ D F + R+ Sbjct: 121 VTSSRNHLAWKQSFSRGISNGPPHIVGHTSER--GTTFRLSIDRDLFS-GDWCQHRMNQR 177 Query: 188 LKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTL-PEKPFIGNFAGDT 246 L A L PG+ + + + GL D A + + P++ + N + Sbjct: 178 LIEAAHLFPGLLVKSQG------LHFKTLRGLADLAANVAHEKNSPNPDRIWWFNAVFED 231 Query: 247 EAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVK 306 + A+ E +S+ N T++ GTH+ A++ E N+ P Sbjct: 232 FHLQAAIAGTDSETE--WKSFANGNLTIENGTHLT--------ALQRVIEACNLRPA--- 278 Query: 307 LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNV 362 A + V + +P+F+G T+ +L + + + + + ++ + V Sbjct: 279 ----------AAFIHVIISNPRFSGPTRSKLDVPEIISPIYEALYPSLKSFITEEV 324 >UniRef50_A9CRV4 DNA gyrase subunit B (Fragment) n=2 Tax=Bradyrhizobium RepID=A9CRV4_9BRAD Length = 272 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 82/169 (48%), Positives = 108/169 (63%), Gaps = 1/169 (0%) Query: 37 QEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHA 96 EV+DN++DEALAGHA RV V L+AD S+ V DDGRG+PVDIH EGV A E+I+ +LHA Sbjct: 1 YEVVDNAIDEALAGHASRVLVTLNADNSVTVYDDGRGIPVDIHKGEGVSAAEVIMTQLHA 60 Query: 97 GGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC 156 GGKF +Y+ SGGLHGVG+SVVNALS ++ + + D + + I F +G+ V L+VVG Sbjct: 61 GGKFDQNSYKVSGGLHGVGVSVVNALSSKLGLRIWGDDKEHYIEFAHGDAVAPLKVVGDA 120 Query: 157 GKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDE 205 + GT V F F + + + L H L+ A L GV I D Sbjct: 121 PGKR-GTEVTFLASPETFKNIEYDFATLEHRLRELAFLNSGVHIVLSDH 168 >UniRef50_D2J2Q7 DNA gyrase subunit B (Fragment) n=7 Tax=Corynebacterineae RepID=D2J2Q7_9ACTO Length = 249 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 63/253 (24%), Positives = 100/253 (39%), Gaps = 43/253 (16%) Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPRFS 180 LS +VE+ ++ DG + + + R TGT+V FWPD F ++ RF+ Sbjct: 1 LSTKVELEIQNDGFNWEQTYT---YATPGALEKGTPTRKTGTTVRFWPDPEIFTETTRFN 57 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEI---------------------------------- 206 + L+ A L G+ IT D+ Sbjct: 58 AETVARRLQEMAFLNKGLTITLTDQRPQAIEPPGDADGDEESGTTEAAEVVKSEEEKAAA 117 Query: 207 --NNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLT 264 + + Y DGL DY+ ++ G V+ A+ W E + Sbjct: 118 AAKPKTRTYHYPDGLVDYIKHLNRTKQSIHTTVVGFTGQGTGHEVEVAMQWNAGYSESVH 177 Query: 265 ESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVK--LSAEDIWDRCAYVLSV 322 ++ N I T +GGTH G R L + ++ + ++ + LS +DI + A V+SV Sbjct: 178 -TFANTINTHEGGTHEEGFRAALTLTVNKYAVDKKLIKDKKEDRLSGDDIREGLAAVISV 236 Query: 323 KMQDPQFAGQTKE 335 K+ DPQF GQTK Sbjct: 237 KVGDPQFEGQTKT 249 >UniRef50_B1PJM5 DNA gyrase subunit B (Fragment) n=1 Tax=Micromonospora tulbaghiae RepID=B1PJM5_9ACTO Length = 215 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 11/219 (5%) Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VVNALS R+ V + +DG V+ G + + TG++V FWPD FF++ Sbjct: 1 VVNALSPRMGVEIHKDGFVWGQ---RGNHSKPRPLEKGEETDRTGSAVCFWPDPDFFETV 57 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEINNT-------EQRWCYQDGLNDYLAEAVNGL 230 F + L+ A L G+ I DE E + Y+ G+ D+ Sbjct: 58 DFDFHTIYRRLQEMAFLTRGLTIHLLDERVPEDEDGKTREVTFHYEGGIGDFGRRLNASK 117 Query: 231 PTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDA 290 + + +V+ A+ GE ++ N I T +GGTH G R L Sbjct: 118 SPIHKTGGEFGAEETGMSVEIAMQGNESYGES-VYTFANNIDTHEGGTHEEGFRAALTSV 176 Query: 291 MREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQF 329 + + + +L +LS EDI + A ++SVK+ DPQF Sbjct: 177 VNRYGAEKKLLKGDERLSGEDIREGLAAIISVKLTDPQF 215 >UniRef50_UPI0001C4799C UPI0001C4799C related cluster n=1 Tax=unknown RepID=UPI0001C4799C Length = 184 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 78/209 (37%), Positives = 117/209 (55%), Gaps = 32/209 (15%) Query: 15 GLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDG 71 GLE VR+RPGMY +T +HL E++DNS+DEALAG+A +++V++ D ++V D+G Sbjct: 1 GLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDNWIKVTDNG 60 Query: 72 RGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVR 131 RG+PVDI + G PAVE+IL SVVNALS+ +EV V Sbjct: 61 RGIPVDIQEKMGRPAVEVILT-----------------------SSVVNALSQDLEVYVH 97 Query: 132 RDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPRFSVSRLTHVLKA 190 R+ +Y+ A++ G DL+ VGT K TGT + F D F ++ ++ L ++ Sbjct: 98 RNETIYHQAYKKGVPQFDLKEVGTTDK--TGTVIRFKADGEIFTETTVYNYETLQQRIRE 155 Query: 191 KAVLCPGVEITFKDEINNT---EQRWCYQ 216 A L G++IT +DE + E + Y+ Sbjct: 156 LAFLNKGIQITLRDERDEENVREDSYHYE 184 >UniRef50_A7C3L4 Topoisomerase B subunit n=1 Tax=Beggiatoa sp. PS RepID=A7C3L4_9GAMM Length = 337 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 75/353 (21%), Positives = 137/353 (38%), Gaps = 36/353 (10%) Query: 13 LTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVID 69 L + VR+RPGMY N + E++ N+VD LAG AK++++ ++ + + D Sbjct: 11 LELRQAVRKRPGMYFGDIESGGANTVVYEIVANAVDIFLAGLAKKINIEVNNNNIII-SD 69 Query: 70 DGRGMPV--DIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVE 127 DG G P + + VE L H N G+G++V+NA SK++ Sbjct: 70 DGPGFPFFKASPQDTSINLVEYYLTNFHNSPTADNHAPHIHILGRGLGLAVLNAASKKLA 129 Query: 128 VNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHV 187 + +++ F G + G TG+ V D FD+ + L + Sbjct: 130 IESSDGEKLWTQNFGEGMVLSP--ATHESGNFPTGSKVSITLDPMVFDNHGPNSFELRKI 187 Query: 188 LKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTE 247 L PG+ I F ++ + +GL D + + P + F + Sbjct: 188 FFEVVHLYPGLSIEF------EKECFYSNNGLVDLGYILLKKSASYMGMPKMFRFHYQKK 241 Query: 248 AVDWALLWLPEGGE-LLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVK 306 +++ + L + E S+VN +++ G+H GL L + + Sbjct: 242 GIEFQVAALGDSKEGTEFRSWVNGCASVENGSHAKGLSSAL-----------RLNKWKPE 290 Query: 307 LSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLN 359 + ++ V M DP+FAG ++ L + + + +LN Sbjct: 291 I----------ALIHVIMHDPKFAGPCRDALQMPEVLKVIEEKLTPEIKAFLN 333 >UniRef50_D1AIT2 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIT2_SEBTE Length = 226 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 112/230 (48%), Gaps = 10/230 (4%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDV 57 M++ ++A +I VL +E +R++P M+ + +L E+IDN V+EAL G + V Sbjct: 1 MSEIFDAKSIAVLGIMEGIRKKPEMFIGSVSAEGLCNLVWEIIDNCVNEALEGFCNTIKV 60 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 L + +EV D+GRG+PVD + + G +E+IL + G+ + Y+ S + G+ Sbjct: 61 RLLKNNIIEVSDNGRGLPVDFYEKAGKSKLEVILTGKYIRGELTGGIYKLSRKKYKGGLV 120 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 VN LS+ +E V +DG+V+ + G D++ G + GT + F D F Sbjct: 121 SVNGLSETLEAVVIKDGKVWYQKYHKGVPSGDIKKTGEKSEYIHGTVIRFRADREIFGEL 180 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFKDEIN---NTEQRWCYQDGLNDYLA 224 + L LK G+++ DE N + + + + ++L Sbjct: 181 EYDYEILLAKLKE----IRGIKVILCDERNEAAGKTESFYFNGEIREFLK 226 >UniRef50_C0F8C8 DNA gyrase, B subunit (Fragment) n=1 Tax=Wolbachia endosymbiont of Muscidifurax uniraptor RepID=C0F8C8_9RICK Length = 288 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 2/132 (1%) Query: 421 SAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS--DDLS 478 SAGG+AKQ R+R+ QA++ L+GKILN VS D + +S E+ + AIG S D+ Sbjct: 1 SAGGTAKQGRNRKTQAVLALRGKILNVERVSLDRIFSSAEIGSLITAIGAGIGSEHFDIE 60 Query: 479 QLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYA 538 + RY KI I+ DAD DG HI TL+ F +H R +++ G++Y+A PPLY++ + Y Sbjct: 61 KARYHKIIIMTDADVDGSHIRTLILTFFFRHMREVIEKGYLYIAQPPLYKVTKNAKDTYI 120 Query: 539 LTEEEKEGVLEQ 550 +E E + Sbjct: 121 KDDETFEEYIIN 132 >UniRef50_A6N6C7 DNA gyrase subunit B (Fragment) n=1 Tax=uncultured bacterium RepID=A6N6C7_9BACT Length = 353 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 67/309 (21%), Positives = 106/309 (34%), Gaps = 63/309 (20%) Query: 201 TFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGG 260 + E R + +YL L F D V+ A+ W E Sbjct: 101 SCVSERRIDRAREQFTRTCPEYLH---RTRTVLHPTVFHSVGEKDGITVEVAMQW-KESY 156 Query: 261 ELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNIL-PRGVKLSAEDIWDRCAYV 319 + + N IP GGTH+ LR + + F E + V+ + ED+ + V Sbjct: 157 QENVLCFTNNIPQRDGGTHLTALRAAMPRTLNHFIEENELARKAKVETTGEDMREGRTCV 216 Query: 320 LSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRR 379 LSVK+ P+F+ QTKE+L S + V VV D +L + A ++ I +A+ R Sbjct: 217 LSVKVPPPKFSSQTKEKLVSSEVRPAVEEVVSDQMRSFLLEKPAEARIIVGKIIEAARAR 276 Query: 380 MRAAK------KVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDRE 433 A + + + G K ++ Sbjct: 277 EAARRGRSLPVRRRGETSLRGSLRSPKSKVAPCRE------------------------- 311 Query: 434 YQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADS 493 ++PL+ S+ V VA + S + ++DAD Sbjct: 312 --GLLPLR---------STQRV---------CVAHWLRQGSR-------HAVHDMSDADV 344 Query: 494 DGLHIATLL 502 DG HI TLL Sbjct: 345 DGSHIRTLL 353 >UniRef50_Q6Y3A9 Gyrase B (Fragment) n=1 Tax=Pelobacter acidigallici RepID=Q6Y3A9_PELAC Length = 277 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 5/197 (2%) Query: 116 ISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFD 175 +SVVNALSK +E+ +R D +++ G V L G KR GT V F P+E F+ Sbjct: 1 VSVVNALSKWLELEIRGDEKLFPPILPGGGXVAPLAETGATRKR--GTKVTFMPEEEIFE 58 Query: 176 SPRFSVSRLTHVLKAKAVLCPGVEITFKDEI-NNTEQRWCYQDGLNDYLAEAVNGLPTLP 234 + FS L+ L+ A L GV I D +N + Y+ G+N ++ + Sbjct: 59 TTEFSFDVLSQRLRELAFLNAGVRIGISDMRVDNKSHEFYYEGGINSFVEYLNRNKIAVH 118 Query: 235 EKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREF 294 KP + ++ + + S+ N I T +GGTH+ G + L M + Sbjct: 119 PKPIYFRGEKGGVETEVSMQYNDS-FDEKIFSFANNINTHEGGTHLVGFKAALTRTMNAY 177 Query: 295 CEYRNILPR-GVKLSAE 310 N+L + V +S + Sbjct: 178 AAANNLLKKEKVSISGD 194 >UniRef50_UPI0001788AA3 transcriptional regulator, ArsR family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788AA3 Length = 372 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 101/202 (50%), Gaps = 11/202 (5%) Query: 6 NADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVILHAD 62 +A L E R GMY + + L V++NS+ E +G+ ++ + LH D Sbjct: 176 DASDY--LEMSE-TRNNAGMYFGPSHGFDIHQLLWAVVENSILEHTSGYGDQIGIFLHED 232 Query: 63 QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNAL 122 S+ V D+GRG+PV P VP V+ IL +H ++ ++ G G+ I+VVNAL Sbjct: 233 GSVTVTDNGRGIPVQALPNSDVPVVQSILTDVHR--FNNSAHFLVPGAEKGISIAVVNAL 290 Query: 123 SKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVS 182 SK++ V +RRDG +Y + +G L VG + TGTSV F P+ F S F Sbjct: 291 SKQLSVEIRRDGNIYRQEYRHGIPQTGLLTVGLTQE--TGTSVTFKPETELFSSA-FEFD 347 Query: 183 RLTHVLKAKAVLCPGVEITFKD 204 R+ A A P + +T ++ Sbjct: 348 RILEHKDAIAADYPALALTIRN 369 >UniRef50_C7UEA1 Predicted protein n=22 Tax=Enterococcus faecalis RepID=C7UEA1_ENTFA Length = 342 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 67/354 (18%), Positives = 136/354 (38%), Gaps = 34/354 (9%) Query: 14 TGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRG 73 +E +++RP + TT L ++ +++ L + + Sbjct: 14 EFIERIQKRPEAFIGTTGLVGLEN-LLVQTINGLLEFF---------------IEKNQGK 57 Query: 74 MPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRD 133 + + + ++ V + + + +SV+ A SK+V +++ ++ Sbjct: 58 IAIQLSRQQISFQVSSTRPLVFEQKQVDLEPPFLY-------LSVLQAFSKQVGISIDQE 110 Query: 134 GQVYNIAFENGEKVQDLQV-VGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKA 192 Q + G+ + L + + +R V FWPD F + S R+ + A Sbjct: 111 KQRTIFIYHQGQLKKRLLLPIEETQERI---EVLFWPDTQIFGTESLSYMRVLQQCQQIA 167 Query: 193 VLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWA 252 +L PG++I E + Y GL++YL E N L K A TE Sbjct: 168 MLNPGLKILLTQEEEQKNLCY-YPKGLSNYLFEKDN---PLTRKAAPIIQAKQTELALVQ 223 Query: 253 LLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDI 312 + + +++VN GGTH G G++ A +F E ++ + ++A+ Sbjct: 224 FILSKNHAPQVQKTFVNGHYPSLGGTHYEGFLDGVVAAFNQFLEEQHYS---LSVTADSF 280 Query: 313 WDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAE 366 +VL++ + P++ TK L + + V VV D + ++ + E Sbjct: 281 LAEFDFVLAITIPKPRYTDATKTILRNTELYEVVKEVVFDELQHYFQRHPKWLE 334 >UniRef50_B9XLD1 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=bacterium Ellin514 RepID=B9XLD1_9BACT Length = 353 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 71/378 (18%), Positives = 130/378 (34%), Gaps = 52/378 (13%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPN---HLGQEVIDNSVDEALAGHAKRVDV 57 M Q Y++ I +T E VR+RPGMY P ++ + +I+ +D + + Sbjct: 1 MAQ-YDSSHIAKMTFKEGVRKRPGMYFGLNGPAAIPYMLRYIINGVLDTTPDTFTGPIRI 59 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 + S +I D + + P + + K Y S S Sbjct: 60 TI---NSGTIITDCPSLSAPLFPPAELEQWFKL--------GSDMKPYHQSY------AS 102 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDS- 176 V A S + Q +E+ + + + + + F P F + Sbjct: 103 FVAAASDLFTLESCDGTQ--RARYEDHD-DAPITRILSPATSPPFLRITFRPFAPVFGTI 159 Query: 177 PRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL---AEAVNGLPTL 233 + +++ +L+ ++L G+ + + ++ E YQDGL ++L + P Sbjct: 160 TTAELCKISGMLRDFSLLQAGLATSNRADLLQHEIHHYYQDGLINFLFEADYLHHPHPPS 219 Query: 234 PEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLL----- 288 P + V+ L + G ++VN T + GTH+ GL L Sbjct: 220 HPDPLSFKATENKMTVEGHLRFT-NGYTHQVRTWVNRQST-ESGTHLEGLGLALSGIFPN 277 Query: 289 -------DAMR-EFCEYRNILPRGVKLSAEDIWDR-CAYVLSVKMQDPQFAGQTKERLSS 339 A+ F YRN I L +++ +P F+G T+ LS+ Sbjct: 278 PSRDFRDMAINTNFANYRNKTK--------VIVPHAMIAALHLRLPEPHFSGATRYNLSN 329 Query: 340 RQCAAFVSGVVKDAFILW 357 + FV Sbjct: 330 PEARDFVHRAAAATLKQQ 347 >UniRef50_C7P9T7 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit-like protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7P9T7_CHIPD Length = 352 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 70/375 (18%), Positives = 138/375 (36%), Gaps = 37/375 (9%) Query: 11 EVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHA--KRVDVILHADQSLEVI 68 L +E +R RP MY + + + ++ + + L V++ + D + V+ Sbjct: 5 PSLPVIESIRNRPVMYLGSVNSYGI-RRLMKMLITDYLEDVTGLSTVEITFNPDSFVSVV 63 Query: 69 DDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEV 128 GMPVD EL+ S KN++ +++ A+S+ V V Sbjct: 64 --LSGMPVD----------ELLHEVAFLQEISSGKNFKI---------ALLIAISRFVLV 102 Query: 129 NVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVL 188 + +G++++I G ++ G V F +E F + + + +L Sbjct: 103 RIVVNGEIHSITSHAGIYEVEMH---PADGEPNGIKVDFQLEEQIFKHNQVAYIPMNIML 159 Query: 189 KAKAVLCPGVEITFKDEINN-TEQRWCYQDGLNDYLAEAVNGLPTLPEK---PFIGNFAG 244 + A L PG++I D + ++ G+++ + ++ P A Sbjct: 160 QQLAYLNPGLKIISVDNRGELQRNVFYFRTGISELFNDLLDKHDYGSMNAWLPIELKTAI 219 Query: 245 DTEAVDWALLWLPEGG---ELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNIL 301 + L + S+ N T G+ V G+ +GL DA E E + Sbjct: 220 NGYIFHVILRYHHIYTVYPAPYIRSFANNEATKGHGSLVEGVLKGLEDAFVEVGEKEGV- 278 Query: 302 PRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 +K++ + I +VK + + G++K++L V VK + +L N Sbjct: 279 --ELKVNKKRIGKMLVLFAAVKGEPLTYDGRSKDKLDMPGLKKDVRKFVKRGVLKYLESN 336 Query: 362 VQAAELLAEMAISSA 376 + E I Sbjct: 337 SGDRRRVLEKFIRKD 351 >UniRef50_Q6Y3B0 Gyrase B (Fragment) n=1 Tax=Geobacter pelophilus RepID=Q6Y3B0_9DELT Length = 299 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 62/215 (28%), Positives = 84/215 (39%), Gaps = 18/215 (8%) Query: 272 PTMQGGTHVNG-LRQGLLDAMREFCEYRNILPR----GVKLSAE------DIWDRCAYVL 320 GG H L+ L M + N+ + ++ E + A + Sbjct: 91 HQHPGGGHALHRLKGSLTRTMNTYATANNLFEKREGGDLRRRPEGGAHRGHFGEDLAAAV 150 Query: 321 SVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQ-RR 379 L + + Q + + + Sbjct: 151 RGA------DQDQAGELGGERVRRDPDEREARHLSGRKPGHGQEDPGEIDRCGPGPRGAQ 204 Query: 380 MRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMP 439 R A K LPGKLADC +D ELFLVEGDSAGGSAKQ RDR+YQAI+P Sbjct: 205 ERRANSPAAKVRLEVGTLPGKLADCQEKDPALCELFLVEGDSAGGSAKQGRDRKYQAILP 264 Query: 440 LKGKILNTWEVSSDEVLASQEVHDISVAIGIDPDS 474 LKGKILN + D++LASQE+ + A+G Sbjct: 265 LKGKILNVEKARFDKMLASQEIRTLISALGTSIGK 299 >UniRef50_Q9FYE9 DNA gyrase subunit B-like protein n=3 Tax=Arabidopsis thaliana RepID=Q9FYE9_ARATH Length = 257 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 80/190 (42%), Gaps = 3/190 (1%) Query: 198 VEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLP 257 + ++ + E N+ + + Y GL++++ L + + ++ AL W Sbjct: 21 ITVSLEMEDNDPNKEYLYAKGLSEFVTWLNADKKPLHD-VLGFRKEINGTTINIALQWCV 79 Query: 258 EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNIL-PRGVKLSAEDIWDRC 316 +G Y N I TM GGT+++G++ + + E ++ + + + E + + Sbjct: 80 DGYSNKILGYANGIRTMDGGTYIDGVKASITRTLNSLVEKSKLVEDKDIIFTEEHVMEGL 139 Query: 317 AYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSA 376 ++SV + P+F GQT +RL + V V++ + + E + + ++ Sbjct: 140 TCIVSVIVPKPEFEGQT-QRLGNPNVREIVDQSVQECLMESFELHPDVFESIMSKSYNAY 198 Query: 377 QRRMRAAKKV 386 + + + Sbjct: 199 KTDLAVKRAR 208 >UniRef50_A8V367 Gyrase B (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V367_9AQUI Length = 277 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 23/191 (12%) Query: 457 ASQEVHDISVAIGIDPD--------SDDLSQLRYGKICILADADSDGLHIATLLCALFVK 508 ++ EV I AIG D+S+LRY KI ++ADAD DG HI TLL LF + Sbjct: 1 SNDEVRSIINAIGTGIGLPTESDEEGFDISKLRYHKIILMADADVDGSHITTLLLTLFYR 60 Query: 509 HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGE 568 +F L+++G +Y+A PPLY++ G+ Y +EE ++ + + K L + Sbjct: 61 YFPQLIENGFLYIAQPPLYKLKKGRTNIYVKDDEELARIIIDFALDEIEVVD---KKLTK 117 Query: 569 MNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLA----------KKRSEDRRNW 618 L + + L + I D + DA++ + L+ K+ + +N Sbjct: 118 SQLKNLVKKA--KEYKDLRESLIKRRDAKIIDALISLKLSEDDLLYEEKTKEIVDKLKNV 175 Query: 619 LQEKGDMAEIE 629 + E E + Sbjct: 176 ITEYEIYYEKD 186 >UniRef50_C1SL26 DNA gyrase subunit B n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SL26_9BACT Length = 322 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 13/172 (7%) Query: 464 ISVAIGIDPDS--DDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYV 521 + A+G ++ +LRY KI I+ DAD DG HI+TL+ F ++ +++ G++Y+ Sbjct: 1 MITALGTGIGKDDFNIEKLRYHKIIIMTDADVDGAHISTLIMTFFFRYMTEIIERGYLYM 60 Query: 522 ALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKK---GKPNVQRFKGLGEM--NPMQLRE 576 A PPLY++ GK Y EE L R+K L E ++ Sbjct: 61 ASPPLYKVKKGKSERYIQNEETMVNYLLDQGLDGVDIAHVQPHRYKELLENLIKLNRMVT 120 Query: 577 TTLDPNT-RRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMAE 627 R+LV+L +D L K + +Q+ G + + Sbjct: 121 KFEKKGYSRKLVKLLASYDDL-----HFSKLEDKDFVDGLLAAMQKYGILDQ 167 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 6/105 (5%) Query: 527 YRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRL 586 Y++++ E+ T E +EQ +K QR+KGLGEMNP QL ETT+DP +R L Sbjct: 223 YKLNVDGEITNFETLTEFVSFVEQRGKKGLGV--QRYKGLGEMNPEQLWETTVDPQSRTL 280 Query: 587 VQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 ++ I ED + + + +L+ RR +++ ++ +++ Sbjct: 281 YRVRI--EDAEMANELFSLLMG-DVVAPRREFIENNALNVRNLDI 322 >UniRef50_C0SNC2 DNA gyrase subunit B (Fragment) n=87 Tax=Lactobacillales RepID=C0SNC2_9STRE Length = 153 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 7/156 (4%) Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFF-DSPRFS 180 LS +++V V ++GQVY + G+ V DL+V+G + TGT+VHF PD F ++ F Sbjct: 1 LSTQLDVRVHKNGQVYFQEYRRGQVVDDLKVIGETDR--TGTTVHFTPDPEIFTETSEFD 58 Query: 181 VSRLTHVLKAKAVLCPGVEITFKDEINNTE---QRWCYQDGLNDYLAEAVNGLPTLPEKP 237 ++L ++ A L G+ I+ D+ + E + + Y+ G+ Y+ + + +P Sbjct: 59 FAKLAKRVQELAFLNKGLRISITDKRDGNEANDKEYHYEGGIVSYVEFLNDTKEVIFNQP 118 Query: 238 FIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPT 273 + + AV+ A+ + E S+ N I T Sbjct: 119 IYTDGEMEGIAVEVAMQYTTGFHE-NVMSFANNIHT 153 >UniRef50_C3RSA4 DNA gyrase subunit B (Fragment) n=3 Tax=Lactobacillales RepID=C3RSA4_9ENTE Length = 156 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 7/157 (4%) Query: 123 SKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCG---KRNTGTSVHFWPDETFF-DSPR 178 S+++EV V ++G+VY F+ G+ DL+V+G GT VHF PD F ++ Sbjct: 1 SEKLEVKVFKNGKVYYQDFKRGKINADLKVIGETELHGTEVHGTEVHFVPDPEIFNETTE 60 Query: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTE--QRWCYQDGLNDYLAEAVNGLPTLPEK 236 F+ +L ++ A L G+ I+ +D ++ Y+ G+ Y+ L + Sbjct: 61 FNFDKLATRIRELAFLNRGLHISIEDRRPEEPLFNQYHYEGGIKSYVEHLNANKEVLFPE 120 Query: 237 PFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPT 273 P V+ ++ + ++ N I T Sbjct: 121 PIYLEGQQQDINVEVSIQYTDSFH-TNLMTFANNIHT 156 >UniRef50_Q7UUI4 DNA gyrase subunit B n=1 Tax=Rhodopirellula baltica RepID=Q7UUI4_RHOBA Length = 243 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 20/209 (9%) Query: 409 LNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEV------- 461 ++TEL +VEGDSA S Q RD Q+++ L+GK +N + S L ++ + Sbjct: 28 PDQTELVIVEGDSAAKSVNQVRDTTRQSVLALQGKPMNVAKASRSVALRNEVLIRFASTL 87 Query: 462 --HDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHV 519 H +S + + RY ++ +L D D+DG+H L+ ++ L++ V Sbjct: 88 LDHKLSASEDWIEALRKADRCRYARLVVLMDPDADGIHCGVLVLGFLLRFAPQLLQERRV 147 Query: 520 YVALPP--LYRID------LGKEVYYALTEEEKEGVLEQLKRKKG---KPNVQRFKGLGE 568 V PP L+RI G ++ + + K + R +GLG Sbjct: 148 CVVRPPMFLFRIRGTTADQAGVQIRTLVASNPDHARRMEAKLTEAGMSDYERFRHRGLGS 207 Query: 569 MNPMQLRETTLDPNTRRLVQLTIDDEDDQ 597 + P LR +DP++R +++ ++ D Sbjct: 208 IPPDVLRTCCVDPSSRAADEMSREEAADA 236 >UniRef50_UPI0001908742 DNA topoisomerase IV subunit B n=1 Tax=Rhizobium etli IE4771 RepID=UPI0001908742 Length = 200 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 53/104 (50%), Positives = 69/104 (66%), Gaps = 4/104 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVI 58 + Y A +I VL GLEPVR RPGMY T +HL EVIDN++DEA+AGHA ++V Sbjct: 97 SDEYGASSIRVLEGLEPVRMRPGMYIGGTDEKALHHLFAEVIDNAMDEAVAGHANFIEVH 156 Query: 59 LHADQSLEVIDDGRGMPVDIHPE-EGVPAVELILCRLHAGGKFS 101 L L V D+GRG+PV+ HP+ G +E+I+ +LHAGGKF Sbjct: 157 LDLQGYLTVTDNGRGIPVENHPQVPGKSTLEVIMTKLHAGGKFD 200 >UniRef50_Q44273 DNA gyrase subunit B (Fragments) n=5 Tax=Acinetobacter RepID=GYRB_ACIGA Length = 216 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 50/100 (50%), Positives = 64/100 (64%), Gaps = 2/100 (2%) Query: 389 KKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTW 448 K LPGKLADC +D +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN Sbjct: 117 KSALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKMQAILPLKGKILNVE 176 Query: 449 EVSSDEVLASQEVHDISVAIGIDPD--SDDLSQLRYGKIC 486 D++++SQEV + A+G + +LRY KI Sbjct: 177 RARFDKMISSQEVGTLITALGCGIGREEYNPDKLRYHKII 216 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 2/128 (1%) Query: 104 NYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGT 163 +Y+ SGGLHGVG+SVVNALS ++E+ + R G ++ +++G+ V L+V+G TGT Sbjct: 1 SYKVSGGLHGVGVSVVNALSSKLELTIHRAGHIHQQEYKHGDPVYPLKVIG--DIETTGT 58 Query: 164 SVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYL 223 +V FWP F F+V L L+ + L GV I +DE E + + GL++ Sbjct: 59 TVRFWPSAETFSQTIFNVDILARRLRELSFLNAGVRIVLRDERVALEHIFDLEVGLSEKS 118 Query: 224 AEAVNGLP 231 A + GLP Sbjct: 119 ALDIAGLP 126 >UniRef50_A5M9T1 DNA gyrase subunit B n=2 Tax=Streptococcus pneumoniae RepID=A5M9T1_STRPN Length = 128 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 3/86 (3%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYTDTT---RPNHLGQEVIDNSVDEALAGHAKRVDVI 58 Q Y+A I+VL GLE VR RPGMY +T +HL E++DNS+DEALAG A + V Sbjct: 10 AQDYDASQIQVLEGLEAVRMRPGMYIGSTSKEGLHHLVWEIVDNSIDEALAGFASHIQVF 69 Query: 59 LHADQSLEVIDDGRGMPVDIHPEEGV 84 + D S+ V+DDGRG+PVDI ++ V Sbjct: 70 IEPDDSITVVDDGRGIPVDIQEKQAV 95 >UniRef50_UPI0001698B4B DNA gyrase, B subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698B4B Length = 199 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 7/160 (4%) Query: 184 LTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFA 243 L L+ + L G I ++E + E + Y+ G+ ++ + +K F + Sbjct: 39 LAKRLRELSFLNSGARIILREESSGKEDVFEYKGGILAFVEHLNRNKTPIHKKVFHFSTD 98 Query: 244 GDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR 303 + V+ AL W + Y N IP GG+H+ G R L + ++ E +L + Sbjct: 99 KNDVGVEVALQWNES-YQENIFCYTNNIPQRDGGSHLAGFRAALTRTLNQYIEKEGVLKK 157 Query: 304 -GVKLSAEDIWDRC---AYVLSVKMQDPQFAGQTKERLSS 339 V S +D R Y L +Q F + K++L S Sbjct: 158 HKVNTSGDDAKGRLDSQFYQLKCLIQ--SFHLRRKDKLVS 195 >UniRef50_D2PP74 GCN5-related N-acetyltransferase n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PP74_9ACTO Length = 337 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 5/180 (2%) Query: 9 AIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVI 68 ++ +E +R+ P HL EVI +DEA+ G +V V+LHAD S+ V Sbjct: 149 SVADTEHVEQIRQDPAYRAG--GVLHLALEVIAYPLDEAVEGTTTQVRVVLHADGSIAVS 206 Query: 69 DDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEV 128 D+GRG V + GVP V+ I+ + + GL G+SV ALS+ Sbjct: 207 DNGRGTAVRF-DDGGVPMVKPIMATRDLRFFADPDSPRLPDGLPRAGMSVPIALSEWAVH 265 Query: 129 NVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVL 188 R + +E+G L V +TGT++HF PD T F + L+ Sbjct: 266 TNHRTEGSWTRRYEHGMPRGALTAVP--ADSSTGTTIHFRPDRTLFGEEGVTPEALSAAC 323 >UniRef50_A6G3Y8 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G3Y8_9DELT Length = 272 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 72/304 (23%), Positives = 134/304 (44%), Gaps = 33/304 (10%) Query: 47 ALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQ 106 L+G R+ V L D V+DDG G+ P E + +E + G ++ + Sbjct: 2 HLSGRCSRLYVSLTHDHF-CVVDDGPGL----EPSEVLDQLETHHKKRTRQGDRAHAHVI 56 Query: 107 FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVH 166 + G+G++++NAL++R+E +RR G+V FE V + ++VG C ++GT++ Sbjct: 57 GT----GMGLAMINALARRLEFELRRAGEVRRWVFEGTVLVSENELVGACD--DSGTTLR 110 Query: 167 FWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEA 226 WPD + P S + L+ VL+ LCP + + + + GL ++ Sbjct: 111 VWPDASLMREPLPSRAELSAVLEKVHWLCPALRVELDGRR------FSGEAGLAAWIRRQ 164 Query: 227 VNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQG 286 + E + + A V A WL E ++VNL T + G+H++ L +G Sbjct: 165 PEWDGSPVETLELVDGAR-GARVGLAWAWLDEPCVARQAAFVNLRETPR-GSHMDALLEG 222 Query: 287 LLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFV 346 L +S R ++SV +++P++ T+E L+ + A++ Sbjct: 223 LAARY--------------GVSPAMARRRVLALVSVVLEEPRYDSPTREVLAQPELGAWI 268 Query: 347 SGVV 350 + Sbjct: 269 EASL 272 >UniRef50_Q2B8E8 DNA gyrase, B subunit n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8E8_9BACI Length = 350 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 98/206 (47%), Gaps = 15/206 (7%) Query: 2 TQTYNADAIEVLTGLEPVRRRPGMYT----DTTRPNHLGQEVIDNSVDEALAGHAKRVDV 57 + + + L E +R P N L +I ++V E AG A R+++ Sbjct: 156 AEMFESSRYSAL---EALREEPEKMDMKTEGDFDANILLFSLIHHAVQEHEAGFASRINI 212 Query: 58 ILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS 117 LH+D S V DDGRG+PV + + ++ +L + + N + G+ ++ Sbjct: 213 YLHSDGSATVSDDGRGIPVSLLEGTSMSRLQDVLTDVEKNYLEDSLNEKS-----GIPVA 267 Query: 118 VVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSP 177 +NA S+++ V +++D +Y+ ++ G+ + + +G + TGTS+ F PD+ F S Sbjct: 268 AINAFSEKLTVLIKKDTMIYSQEYQYGKALTRVVPIGKTNE--TGTSITFLPDKKVFKSG 325 Query: 178 RFSVSRLTHVLKAKAVLCPGVEITFK 203 F+ ++L + L P + ++ + Sbjct: 326 -FNAAKLEGKINELQGLHPDLLVSLQ 350 >UniRef50_Q23CP4 DNA topoisomerase 2 n=3 Tax=Tetrahymena thermophila RepID=Q23CP4_TETTH Length = 784 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 106/298 (35%), Gaps = 28/298 (9%) Query: 196 PGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEK---------PFIGNFAGDT 246 G+ I +D I E + ++ ++Y +N K F +T Sbjct: 101 KGIPIEKQDNIFIPELIFSHERTSSNYQNTNLNDPKLTGGKNGYGAKLTNVLSEYFEVET 160 Query: 247 EAVDWALLWLPEGGELL--------TESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR 298 + + L G S+VN +P GGTHVN ++ + + Sbjct: 161 KYDNLIFKQLHYEGNTKHSQQLQKDIISFVNGLPQ-NGGTHVN-FINQIIKQ-DQLIKNL 217 Query: 299 NILPRGV----KLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354 N+ + K + + S+ + P + Q+K++L + + F + ++ Sbjct: 218 NVQDQDELEVMKQLGKQYRQNVFIIFSLLVHQPSYTSQSKDQLKTNKKDWFDTIELEKYI 277 Query: 355 ILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDLNRTEL 414 + Q+ EL E+ + ++++ K ++K + + L Sbjct: 278 QQQIQQSSLLQELKIEIQQQTKKQQVLKQKDQIKKMNINSVKKLQDAIKIRDRRTE-CSL 336 Query: 415 FLVEGDSAGGSAKQAR---DREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAIG 469 EGDSA + ++ PLKGK++N + ++ ++ + + ++ Sbjct: 337 LCAEGDSAMSFIRSGLTEQQKQIYGRFPLKGKLMNVNSKTDRQIGENEILSQLQRSLN 394 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 45/205 (21%) Query: 7 ADAIEVLTGLEPVRRRPGMYTDTT-----------------------------RPNHLGQ 37 + + + VR+ MY + + Sbjct: 2 QNQYKQMKFELHVRQCADMYIGSIQPEEIMTPIYSKNQENQITLEYKKVKIIPGLLTVIG 61 Query: 38 EVIDNSVD--EALAGHAKRVDVILHAD---QSLEVIDDGRGMPVDIHPEEGVPAVELILC 92 E++ N+ D K + + L D + + G+G+P++ ++ + ELI Sbjct: 62 EILTNARDVMFQQRKQKKGIQIYLDFDEIEGEIVLKTVGKGIPIEK--QDNIFIPELIFS 119 Query: 93 RLHAGGKFSNKN---YQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNI-AFENGEK-- 146 + N N + +GG +G G + N LS+ EV + D ++ +E K Sbjct: 120 HERTSSNYQNTNLNDPKLTGGKNGYGAKLTNVLSEYFEVETKYDNLIFKQLHYEGNTKHS 179 Query: 147 ---VQDLQVVGTCGKRNTGTSVHFW 168 +D+ +N GT V+F Sbjct: 180 QQLQKDIISFVNGLPQNGGTHVNFI 204 >UniRef50_UPI00016B21F7 DNA gyrase subunit B n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21F7 Length = 114 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 44/84 (52%), Positives = 60/84 (71%), Gaps = 3/84 (3%) Query: 3 QTYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVIL 59 Q+Y+ I+VL GLEPVR+RPGMY +T +HL +E+ DNS+DEA+AG+A +V+V L Sbjct: 31 QSYDGSQIQVLEGLEPVRKRPGMYIGSTGYDGVHHLIKEIADNSIDEAIAGYATKVEVTL 90 Query: 60 HADQSLEVIDDGRGMPVDIHPEEG 83 D + DDGRG+PVD HP+ G Sbjct: 91 LEDGGARISDDGRGIPVDKHPKTG 114 >UniRef50_A0BK45 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK45_PARTE Length = 221 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 30/148 (20%) Query: 1 MTQTYNADAIEVLTGLEPVRRRPGMYTDTT---------------------------RPN 33 M++ D ++++ +E + RP Y + Sbjct: 1 MSKN-VEDVYKMVSQVEHILLRPDTYIGSVEISDQELWICEDSDQISFKFEEFSYCQGLY 59 Query: 34 HLGQEVIDNSVDEALAGH-AKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILC 92 + E++ N+ D R+ V + D S+ V + G G+P+ IH + + E+I Sbjct: 60 KIFDEILVNAADNYQRDKSTDRISVSIDND-SIMVENTGAGIPIQIHKQYNIYVPEMIFG 118 Query: 93 RLHAGGKFSNKNYQFSGGLHGVGISVVN 120 RL + + + +GG +G G V Sbjct: 119 RLLTSSNYDDSEQKVTGGRNGFGDKVSQ 146 >UniRef50_P23992 DNA topoisomerase small subunit n=1 Tax=Enterobacteria phage T4 RepID=TOPS_BPT4 Length = 160 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 61/147 (41%), Gaps = 14/147 (9%) Query: 476 DLSQLRYGKICILADADSDG-LHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKE 534 S + Y + I+ DAD DG I L F ++ L + G + P+ +GK+ Sbjct: 27 KSSSMNYANVAIMTDADHDGLGSIYPSLLGFF-SNWPELFEQGRIRFVKTPVIIAQVGKK 85 Query: 535 VYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDE 594 + T E E + L + +++ KGLG + + RE +P + + + Sbjct: 86 QEWFYTVAEYESAKDALPKH----SIRYIKGLGSLEKSEYREMIQNP---VYDVVKLPEN 138 Query: 595 DDQRTDAMMDMLLAKKRSEDRRNWLQE 621 + +ML+ ++ R+ W+ + Sbjct: 139 W----KELFEMLMG-DNADLRKEWMSQ 160 >UniRef50_A0MYL3 DNA gyrase B (Fragment) n=14 Tax=Streptomyces RepID=A0MYL3_9ACTO Length = 138 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 23/139 (16%) Query: 111 LHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPD 170 LHGVG+SVVNALS RV V V+ DG + ++ G L + TGTSV FW D Sbjct: 1 LHGVGVSVVNALSTRVAVEVKTDGHRWTQDYKFGVPTAPLARNEATDE--TGTSVTFWAD 58 Query: 171 ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTE-------------------- 210 F++ +S L+ + A L G+ I DE + + Sbjct: 59 GGIFETTEYSFETLSRRFQEMAFLNKGLTIKLTDERESAKATAGADVAEVAEIAEAEQVR 118 Query: 211 -QRWCYQDGLNDYLAEAVN 228 + Y+ G+ D++ + Sbjct: 119 TVSYHYEGGIVDFVKYLNS 137 >UniRef50_A9ZPQ0 DNA gyrase subunit B (Fragment) n=5 Tax=Corynebacterium RepID=A9ZPQ0_9CORY Length = 183 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 57/186 (30%), Gaps = 54/186 (29%) Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS RVE ++R+G+ + F+N +V R TGT + FW D F++ F Sbjct: 1 LSTRVEAEIKREGKHWYQNFQN---AVPDDLVEGGNARGTGTKIRFWADPEIFETTEFDY 57 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEI----------------------------------- 206 + L+ A L G+ I DE Sbjct: 58 DTIARRLQEMAFLNKGLTIELIDERVTQAQIELEEIAEAESGEARGDETSFDDIPDAGDT 117 Query: 207 ----------------NNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVD 250 + + Y DGL DY+ T+ G+ V+ Sbjct: 118 FNEEDDSTNVITADKKRRKKVTFHYPDGLTDYVKFLNKSKSTIHPTIVSFEAKGEEHEVE 177 Query: 251 WALLWL 256 AL W Sbjct: 178 VALQWS 183 >UniRef50_A7K5X7 DNA gyrase subunit B n=5 Tax=Gammaproteobacteria RepID=A7K5X7_VIBSE Length = 246 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 33/155 (21%) Query: 477 LSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVY 536 L+ YGK+ L++A DG L++ G I G+ Sbjct: 124 LNSKEYGKLADLSEA-LDG-----------------LLEEG---------AYIKRGERTM 156 Query: 537 YALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDD 596 + E L + + QR+KGLGEMNP QL ETT+DP TRR++Q+TI ED Sbjct: 157 PVASFAEALDWLVK--ESMRGLSRQRYKGLGEMNPDQLWETTMDPETRRMMQVTI--EDA 212 Query: 597 QRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 D + L+ + E RRN+++E +A ++V Sbjct: 213 VGADQLFTTLMG-DQVEPRRNFIEENALKVANLDV 246 >UniRef50_B4V6F8 Putative uncharacterized protein n=3 Tax=Actinomycetales RepID=B4V6F8_9ACTO Length = 234 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 56/138 (40%), Gaps = 3/138 (2%) Query: 31 RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELI 90 HL EV+ + DEA + R V LHAD S+ V DDGRG + G + + Sbjct: 48 GLRHLVLEVVAYAADEAESRGGGRCTVTLHADGSVSVADDGRGTDTRF-DDSGRAVRKPV 106 Query: 91 LCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDL 150 + + G G+SVV ALS + RR G + +E G V L Sbjct: 107 MATKDLRFFDHPEPPPLPDGHPRRGMSVVAALSAWLVHTNRRAGGAWTQRYEYGVPVTGL 166 Query: 151 QVVGTCGKRNTGTSVHFW 168 V TGT VHF Sbjct: 167 TPV--ADDGTTGTLVHFR 182 >UniRef50_Q6E0M3 GyrB (Fragment) n=1 Tax=Bacillus thuringiensis RepID=Q6E0M3_BACTU Length = 116 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 3/109 (2%) Query: 107 FSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVH 166 SGGLHG G + ++ V V R+G+++ +E G V DL+V+G TGT Sbjct: 1 VSGGLHGCGARLXCLXAQXSXVFVHREGKIHYQKYERGIPVADLKVIGDTD--QTGTITR 58 Query: 167 FWPDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWC 214 F PD F ++ + L ++ A L +++T +D+ + +++ Sbjct: 59 FKPDPEIFQETTVYDFDTLATRMRELAFLNRNIKLTIEDKREHKQKKEF 107 >UniRef50_B9PF30 Predicted protein n=6 Tax=cellular organisms RepID=B9PF30_POPTR Length = 252 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 40/184 (21%) Query: 455 VLASQ----EVHDISVAIGIDPDSD----DLSQLRYGKICILADADSDGLHIATLLCALF 506 V ++ EV I GI+ + L+ Y +I L G + LL Sbjct: 101 VFNNERHLYEVVIIIRTHGIEKNYFLNFEFLNGTEYSRIVKL------GNQLQGLL---- 150 Query: 507 VKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL 566 + G + G+ + E+ L K + +QR+KGL Sbjct: 151 --------EKG---------AYVSRGERQQSVSSFEQAIEWL--TKESRRGLIIQRYKGL 191 Query: 567 GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGDMA 626 GEMN QL ETT+DPN R +++++I +D D + L+ E RR +++ A Sbjct: 192 GEMNSDQLFETTMDPNKRTMLKVSI--KDAVAADQLFTTLMG-DEVEPRREFIEMNALRA 248 Query: 627 EIEV 630 +++ Sbjct: 249 NLDI 252 >UniRef50_A9DKM1 DNA gyrase subunit B n=1 Tax=Kordia algicida OT-1 RepID=A9DKM1_9FLAO Length = 208 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 14/194 (7%) Query: 13 LTGLEPVRRRPGMYTDTTRPNHLGQ----EVIDNSVDEALAGHAKRVDVILHADQSLEVI 68 + E +R RP Y E++ ++D+ + V L+ D + + Sbjct: 16 IEPYEHIRMRPQWYFTELFEEKKLDSLPLEIVKYAIDQNS----TIITVNLYTD--IFSV 69 Query: 69 DDGRGMPVDIHP--EEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRV 126 + +GM ++ H E + E +L + F K+ SG VG+ +NA S+ Sbjct: 70 EFNKGMSLETHHRYEGDITKAEAVLLEISNYVSFRKKDDLQSGLNGSVGLIRINAASEWC 129 Query: 127 EVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTH 186 ++ +GQ F+ GE + + + ++ T + PD T F + + L Sbjct: 130 KLLTYSNGQKGEFHFKEGE--TETRTICGSDEKKNYTKITVKPDATIFPDLKINPKTLQE 187 Query: 187 VLKAKAVLCPGVEI 200 + G ++ Sbjct: 188 KIDNVRKKLNGFDV 201 >UniRef50_Q070G7 GyrB-like ATPase domain protein n=1 Tax=Crocodilepox virus RepID=Q070G7_CPRV Length = 494 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 85/231 (36%), Gaps = 22/231 (9%) Query: 1 MTQTY------NADAIEVLTGLEPVRRRPGMYTDTTRPN----HLGQEVIDNSVDEALAG 50 MT Y A ++ + G V R P ++ + R + + +EV++N++D Sbjct: 1 MTSEYCHVRPHVARSVFEIVGPTDVERHPTLFRGSVRCHTGACRMVREVVENAIDHCACV 60 Query: 51 HAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGG 110 A V V + + VI+ + ++ + G+ + SGG Sbjct: 61 RAASVYVEV-RRHEVTVINTSSMTIKGTVDGVRCIVPQTMITEMFTLGRSEGRA--VSGG 117 Query: 111 LHGVGISVVNALSKRVEVNVRRDGQVYNIAFEN---GEKVQDLQVVGTCGKRNTGTSVHF 167 HGVG+ +VNAL+KR+ + V + + + N G + + + V F Sbjct: 118 -HGVGLKIVNALAKRIRIEVSDETCSFIYSSRNGALGIGTVNSAPIRDARLGSNFFKVSF 176 Query: 168 WPDETFFDSPRFS-----VSRLTHVLKAKAVLCPGVEITFKDEINNTEQRW 213 F++ + + +L+ ++ + +N + + Sbjct: 177 SIAGEAFNTTQAQACLNLEDYVAALLEECVFYLVEMQKDVRVYLNGQQVPY 227 >UniRef50_Q2GFV4 DNA mismatch repair protein mutL n=9 Tax=Alphaproteobacteria RepID=MUTL_EHRCR Length = 673 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 68/432 (15%), Positives = 141/432 (32%), Gaps = 71/432 (16%) Query: 35 LGQEVIDNSVDEALAGHAKRVDVILHA--DQSLEVIDDGRGMPVDIHPEEGVPAVELILC 92 + +E+++NS+D A + + + + V D+G G+ +E+ Sbjct: 26 VVKELVENSID----AKATAISITIERGGRNLIIVSDNGIGI--------KKEDMEIAFA 73 Query: 93 RLHAGGKFSNKNYQF-SGGLHGVGISVVNALSKRVEVNVRRD-GQVYNIAFENGEKVQDL 150 R + S G G G++ + A+ K V+ RD + + FE GEK Q+L Sbjct: 74 RHATSKLPDGDLTKVRSLGFRGEGLTSIAAVGKVKMVSKYRDSDTAWLMVFEGGEKTQEL 133 Query: 151 QVVGTCGKRNTGTSVHFW------PDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFK 203 T + GT + P+ F + + V + ++ A++ V + Sbjct: 134 ----TPDALSCGTYIEVRDLFFATPNRLKFLRTEKAEVQSIIDMMNKLAMVNHNVMFSLF 189 Query: 204 DEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVD--WALLWLPEGGE 261 N ++ Q D L+E + N + + L G Sbjct: 190 V-DNKQVFKYLTQQSNIDRLSEIKTLGMEFCKNSLPVNVKEEQIQLSGYIGSPTLSRGKS 248 Query: 262 LLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY------------------RNILPR 303 L ++VN P N L + A +F E N+ P Sbjct: 249 SLIYTFVNSRPVYD-----NLLIGAVRYAYSDFIEKDKYPVVVLYLDIPCDQVDANVHPN 303 Query: 304 GVKLSAED-----------IWDRCAYVLSVKMQD-PQFAGQ--TKERLSSRQCAAFVSGV 349 ++ +D I + + L+ K++ +F + + + V Sbjct: 304 KSEVRFQDKKLVYRTVVNAIKEVLSINLNTKLKSISEFENDHFVHASMVNS--RNIGNSV 361 Query: 350 VKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGKLADCTAQDL 409 + F + N+ + + + + + ++ T + KL + + Sbjct: 362 SSEFFKCFQNRKPLLNNDVQKYSSKNVETDDQSLLDTNVSFCTDSKMITNKLKE--ERVY 419 Query: 410 NRTELFLVEGDS 421 + + +GDS Sbjct: 420 ENSREHINKGDS 431 >UniRef50_Q9F8M6 DNA gyrase subunit B (Fragment) n=1 Tax=Carboxydothermus hydrogenoformans RepID=Q9F8M6_CARHY Length = 123 Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 2/102 (1%) Query: 203 KDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGEL 262 KDE N E+ + + G+ DYL L K D V+ AL + E Sbjct: 15 KDERINKEEIFEHSGGIKDYLKYLNKNKEPLH-KIIYFEKEKDEVVVEVALQYCNSFSE- 72 Query: 263 LTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRG 304 S+ N I T +GGTH G + L + ++ + N++ Sbjct: 73 NILSFTNNINTTEGGTHEIGFKTALTRVINDYAKKYNLIKEN 114 >UniRef50_A9AY53 Putative uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AY53_HERA2 Length = 329 Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 55/303 (18%), Positives = 98/303 (32%), Gaps = 38/303 (12%) Query: 20 RRRPGMYTDTTRPNHLGQEVIDNSVDEALAG-HAKRVDVILHADQSLEVIDDGRGMPVDI 78 R GMY Q ++ VD L HA+R+ + + + V D I Sbjct: 12 RENLGMYYGGNDG-IAIQRLLVEYVDFLLKSQHAQRIQITILPEAGFVVQD----FEATI 66 Query: 79 HPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYN 138 E L L +G ++ +++ + GQ Y Sbjct: 67 ESNNFCGLPEDQLFHL-------------------LGA------AQYCTIDLHKAGQHYQ 101 Query: 139 IAFENGEKVQD-LQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPG 197 +++ GE LQ+VG+ +HF P+ F + S+ + L+ A L G Sbjct: 102 LSYS-GEPTVPALQLVGSSQASCR--RIHFVPNHAIFINRTSSIHQFLGSLRGLATLFRG 158 Query: 198 VEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLP 257 I D + T + Y +GL DYL + F G E V L Sbjct: 159 CRIEVVDVMQATTNQLFYPNGLRDYLDGLIYHDLNP---QRYLEFEGANEHVQIKLGLRF 215 Query: 258 EGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCA 317 + + + ++ G+ +GL + + + + + I D Sbjct: 216 GYFSRIEQCLLRYKHVPFEPSYRRGILKGLASGLTTYAQAHGQITASQIIEPAQIRDFGC 275 Query: 318 YVL 320 ++ Sbjct: 276 LLV 278 >UniRef50_Q9K2S8 GyrB protein (Fragment) n=2 Tax=Mycoplasma hominis RepID=Q9K2S8_MYCHO Length = 103 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 1/102 (0%) Query: 126 VEVNVRRDGQVYNIAFENG-EKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRL 184 EV V+RDG+++ F NG V+ L+V+G + TGT++ F PD T + F + Sbjct: 2 FEVWVKRDGKLHYQQFRNGGIPVKPLEVIGNVSEVETGTTIKFHPDYTIMEKENFDFDTI 61 Query: 185 THVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEA 226 K A L G++IT ++ N + +C++ GL DY+ E Sbjct: 62 IDHSKQIAYLNKGLKITVENVEKNIIKVFCFEGGLIDYVKEL 103 >UniRef50_B1PL25 DNA gyrase subunit B (Fragment) n=79 Tax=Bacteria RepID=B1PL25_ECOLX Length = 67 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 39/67 (58%), Positives = 51/67 (76%) Query: 403 DCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVH 462 DC +D +EL+LVEGDSAGGSAKQ R+R+ QAI+PLKGKILN + D++L+SQEV Sbjct: 1 DCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVA 60 Query: 463 DISVAIG 469 + A+G Sbjct: 61 TLITALG 67 >UniRef50_UPI0000382E10 COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000382E10 Length = 122 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 44/80 (55%), Positives = 52/80 (65%), Gaps = 3/80 (3%) Query: 4 TYNADAIEVLTGLEPVRRRPGMYTDTTR---PNHLGQEVIDNSVDEALAGHAKRVDVILH 60 Y+A AIEVL GLEPVRRRPGMY T +HL EVIDNS+DEA+AGHA +++ L Sbjct: 43 GYDASAIEVLEGLEPVRRRPGMYIGGTDERALHHLFAEVIDNSMDEAVAGHASFIELELE 102 Query: 61 ADQSLEVIDDGRGMPVDIHP 80 L V D G+P D HP Sbjct: 103 DTVCLVVTDIVLGIPFDPHP 122 >UniRef50_B9ZDG0 DNA topoisomerase VI, B subunit n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZDG0_NATMA Length = 824 Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 86/244 (35%), Gaps = 35/244 (14%) Query: 6 NADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEA-LAGHAKRVDVILHADQS 64 + AI + E + G + +E +DN++D A AG + V + + Sbjct: 21 SQQAISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEEAGILPDIYVEIQEEGD 80 Query: 65 ---LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 L V D+G G+ + P+ + +L G +F + S G G+GIS Sbjct: 81 YYRLIVEDNGPGLTKESLPK--------VFGKLLYGSRF--HAREQSRGQQGIGISAAVL 130 Query: 122 LS-----KRVEVNVRRDGQVYNIAFE------NGEKVQDLQVVGTCGKRNTGTSVHFWPD 170 S K ++ R +G FE + E ++ T R GT + Sbjct: 131 YSQLTSGKPAKITSRTEGTDEAQYFELIVDTDDNEPEISVEETTTWD-RPHGTRIE---- 185 Query: 171 ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGL 230 ++ + +L + +K AV+ P + + + + ++ + E Sbjct: 186 -LEMEANMRARQQLHNYIKHTAVVNPHARLELR----EPKAHFKFERATDQLPEETEEIR 240 Query: 231 PTLP 234 P Sbjct: 241 PHPH 244 >UniRef50_C5Z2Y8 Putative uncharacterized protein Sb10g016467 (Fragment) n=1 Tax=Sorghum bicolor RepID=C5Z2Y8_SORBI Length = 255 Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 26/179 (14%), Positives = 68/179 (37%), Gaps = 14/179 (7%) Query: 267 YVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQ- 325 +VN + ++GG + + + + + ++ + + + +++ D+ ++ Sbjct: 3 FVNGV-VIEGGFQFDTITRHVEEHLKSSIKRKMKNVQNIEIQTSDVKSHLCVFINADYPF 61 Query: 326 ---DPQFAGQTKERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRA 382 +PQF ++ +++A V + + E+ + + + Sbjct: 62 FYGEPQFQ---------DNAKVYIDPALRNAKFEEFFTEVAHSFIFKEIFRCALKETLAW 112 Query: 383 AKKVVRKKLTSGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLK 441 A K + + + P D ++ L + EGDSA A + R+Y ++ LK Sbjct: 113 ALKEEDESIEANPTKFEDATRVGGVDSHKCTLIITEGDSAKALALGSVRRDYFGVLALK 171 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 35/107 (32%), Gaps = 29/107 (27%) Query: 517 GHVYVALPPLYRID---LGKEVYYALTEEEKEGV-LEQLKRKKGKPNVQRFKGLGEMNPM 572 G + + + P+ ++ T E + + K +++ +K Sbjct: 166 GVLALKVTPILKVTDYTRDCPSQVFYTLNEYTAWEKSKHGTELSKWSIKYYK-------- 217 Query: 573 QLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWL 619 + +++ED D + +K + E+R+ W+ Sbjct: 218 -------------KYFVWVNEED----DKAIKTAFSKHKVEERKKWI 247 >UniRef50_Q401L8 DNA gyrase subunit B (Fragment) n=1 Tax=Mycobacterium kansasii RepID=Q401L8_MYCKA Length = 109 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Query: 122 LSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPRFSV 181 LS R+EV ++RDG ++ +E E + + + TGT+V FW D F++ + Sbjct: 1 LSTRLEVEIKRDGYEWSQVYEKSEPMG---LKQGAPTKKTGTTVRFWADPNVFETTEYDF 57 Query: 182 SRLTHVLKAKAVLCPGVEITFKDEI 206 + L+ A L G+ I D+ Sbjct: 58 ETVARRLQEMAFLNKGLTINLTDQR 82 >UniRef50_Q070G1 GyrB-like ATPase domain protein n=1 Tax=Crocodilepox virus RepID=Q070G1_CPRV Length = 1017 Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 78/237 (32%), Gaps = 36/237 (15%) Query: 9 AIEVLTGLEPVRRRPGMYTDTT-----------------RPNHLGQEVIDNSVDEALAGH 51 + V P Y T L E + N++D L Sbjct: 15 EYRSMRDEAHVLANPSEYLGVTCTVTRGTIFNKRIRYHAGAAKLCDEAVSNAIDHCLITG 74 Query: 52 AKRVDVILHADQSLEVIDDGRGMPVD--IHPEEGVPAVELILCRLHAGGKFSNKNYQFSG 109 + V+V S+ V + R +PV + E G +L ++ G + + + Sbjct: 75 SDAVNVD-MRGVSICVANRSR-VPVRGALDGEPGHVIPRALLRQMRTSGNYVTR--RSVS 130 Query: 110 GLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSV---H 166 G HG G+ +++ ++R+E++V Y+ G V++ + GT Sbjct: 131 GRHGHGLKLIHLFAERLELDVSDGDLAYSYR-REGGDVEESVLDSPLRDERLGTRFFRLR 189 Query: 167 FWPDETFF---------DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWC 214 F PD + VSRL + A L G+ I F + W Sbjct: 190 FSPDPARLNAEREELAEGLREYVVSRLCEYVFYLAELGRGIAIHFNGDRLPYVAPWF 246 >UniRef50_D2RUJ2 DNA topoisomerase VI, B subunit n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RUJ2_9EURY Length = 825 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 83/244 (34%), Gaps = 35/244 (14%) Query: 6 NADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALA-GHAKRVDVILHADQS 64 N AI + E + G + +E +DN++D A G + V + Sbjct: 21 NQQAISIAEFFEKNKHMLGFDSGARGLVTAVKEAVDNALDAAEESGILPDIYVEIEEAGD 80 Query: 65 ---LEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVVNA 121 L V D+G G+ + P+ + +L G +F + S G G+GIS Sbjct: 81 YYRLIVEDNGPGITKESLPK--------VFGKLLYGSRF--HAREQSRGQQGIGISAAVL 130 Query: 122 LS-----KRVEVNVRRDGQVYNIAFE------NGEKVQDLQVVGTCGKRNTGTSVHFWPD 170 S K ++ R G FE + E ++ + R GT + Sbjct: 131 YSQLTSGKPAKITSRTQGSSEAEYFELIVDTDSNEPEISVEETTSWD-RPHGTRIE---- 185 Query: 171 ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGL 230 ++ + +L +K AV+ P + + ++ + ++ + E Sbjct: 186 -LEMEANMRARQQLHDYIKHTAVVNPHARLELR----EPQEHFKFERATDQLPEETEEIR 240 Query: 231 PTLP 234 P Sbjct: 241 PHPH 244 >UniRef50_A4YWI0 DNA gyrase subunit B GyrB n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YWI0_BRASO Length = 118 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 4/102 (3%) Query: 115 GISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTC----GKRNTGTSVHFWPD 170 G+ VVNALS+ ++V V RDG+ + + F G L++ G G GT + F PD Sbjct: 12 GLFVVNALSEWLQVRVWRDGKEHVMRFGRGRSEAPLRITGDAGIVDGAPRRGTEITFCPD 71 Query: 171 ETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQR 212 F + F +R+ L+ V GV +T D+ + + Sbjct: 72 ARVFTTVGFDEARIEQSLRRMPVFKVGVTVTLSDQRSAESKT 113 >UniRef50_B0C128 Putative uncharacterized protein n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C128_ACAM1 Length = 167 Score = 88.9 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 63/150 (42%), Gaps = 5/150 (3%) Query: 42 NSVDEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS 101 +++DEA+ GH V +++ ++ D G+P+ VPAV +++ Sbjct: 9 HAIDEAIDGHCSTVKILVKDFGAVIEYD--AGLPLHPVRNGQVPAVVILMSGPRGCSNM- 65 Query: 102 NKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNT 161 K+ + +GI+++NAL V +GQ ++F+ G+ + + + Sbjct: 66 KKHIEVGSEYCELGIALLNALCCNFSVVTYANGQQATLSFKAGKLQHPVNL--QKSEHAD 123 Query: 162 GTSVHFWPDETFFDSPRFSVSRLTHVLKAK 191 T + F D+T F+ + + + Sbjct: 124 FTRMAFQLDDTILPRFTFNEATIHQHAQEI 153 >UniRef50_UPI0000D546F8 DNA gyrase, B subunit n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D546F8 Length = 204 Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 6/99 (6%) Query: 533 KEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTID 592 KE + E L ++ +K ++ R+KGLGEMNP QL ETTLD R+L+Q+ + Sbjct: 111 KENFSCYGLVEFFNTLFEMSKKGQ--SISRYKGLGEMNPEQLWETTLDRANRKLLQVKL- 167 Query: 593 DEDDQRTDAMMDMLLAKKRSEDRRNWLQEKG-DMAEIEV 630 ED + + ML+ DR+N++Q+ +A +++ Sbjct: 168 -EDQVNAERQLIMLMGDD-VTDRKNFIQDNSIKVANLDI 204 >UniRef50_C8NCI6 DNA gyrase subunit B n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCI6_9GAMM Length = 95 Score = 83.9 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 3/79 (3%) Query: 552 KRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKR 611 K ++QR+K LGEMN +L ETTLDP RR++Q+ + +D + D + L+ + Sbjct: 20 AEGKKTYDIQRYKDLGEMNSEKLWETTLDPAVRRMLQVQL--KDARLADEIFTTLMG-EE 76 Query: 612 SEDRRNWLQEKGDMAEIEV 630 E R ++++ + A I++ Sbjct: 77 VEPHRAFIEDNANSANIDI 95 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.138 0.372 Lambda K H 0.267 0.0424 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,562,077,803 Number of Sequences: 3077464 Number of extensions: 150274933 Number of successful extensions: 453075 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 693 Number of HSP's successfully gapped in prelim test: 673 Number of HSP's that attempted gapping in prelim test: 446766 Number of HSP's gapped (non-prelim): 1815 length of query: 630 length of database: 1,040,396,356 effective HSP length: 135 effective length of query: 495 effective length of database: 624,938,716 effective search space: 309344664420 effective search space used: 309344664420 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 96 (41.5 bits)