Phyre 2 alignment of P31062 with d1p4xa1

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Job Description | P31062
Confidence | 60.43% | Date | Thu Jan 5 11:46:59 GMT 2012
Rank | 258 | Aligned Residues | 39
% Identity | 5% | Template | d1p4xa1
SCOP info | DNA/RNA-binding 3-helical bundle | "Winged helix" DNA-binding domain | MarR-like transcriptional regulators
Resolution | 2.20

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | V | N | K | K | Q | L | A | D | I | F | G | A | S | I | R | T | I | Q | N | . | . | . | . | W | Q | E | Q | G | M | P | V | L | R | G | G | G | K | G | N | E | V | L | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | L | P | F | K | K | I | V | S | D | L | C | Y | K | Q | S | D | L | V | Q | H | I | K | V | L | V | K | H | S | Y | I | S | K | V | R | S | K | I | D | E | R | N | T | Y
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | S | S | S |  | G | G | G | T |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  | S | S | S | T | T | S |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 51 | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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