Phyre 2 alignment of P31062 with d1v4ra1

Return to main results | Retrieve Phyre Job Id

Job Description | P31062
Confidence | 82.73% | Date | Thu Jan 5 11:46:59 GMT 2012
Rank | 126 | Aligned Residues | 33
% Identity | 18% | Template | d1v4ra1
SCOP info | DNA/RNA-binding 3-helical bundle | "Winged helix" DNA-binding domain | GntR-like transcriptional regulators
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 2 | . |  | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . |  |  |  |  | . | . | . | . | . | . | . | . | 30 | . | . | . | .
Predicted Secondary structure |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | E | V | . | N | K | K | Q | L | A | D | I | F | G | A | S | I | R | T | I | Q | N | . | . | . | . | W | Q | E | Q | G | M | P | V | L | R | G | G | G
Query Conservation |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | L | P | S | V | A | D | I | R | A | Q | F | G | V | A | A | K | T | V | S | R | A | L | A | V | L | K | S | E | G | L | V | S | S | R | G | A | L
Template Known Secondary structure |  | B |  |  |  |  |  |  |  |  |  |  | S | S | S |  | T | T |  |  |  |  |  | T | T | T | T | T | T | S | S |  |  |  |  |  | T | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 32 | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions