Phyre 2 alignment of P31062 with c2o8kA_

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Job Description | P31062
Confidence | 39.65% | Date | Thu Jan 5 11:46:59 GMT 2012
Rank | 387 | Aligned Residues | 28
% Identity | 29% | Template | c2o8kA_
PDB info | PDB header:transcription/dna | Chain: A: PDB Molecule:rna polymerase sigma factor rpon; | PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |
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Query Sequence |  | V | N | K | K | Q | L | A | D | I | F | G | . | . | . | . | . | A | S | I | R | T | I | Q | N | W | Q | E | Q | . | G | M | P | V | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |
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Template Sequence |  | Y | S | D | Q | E | I | A | N | I | L | K | E | K | G | F | K | V | A | R | R | T | V | A | K | Y | R | E | M | L | G | I | P | S | S
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  | S |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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