Phyre 2 alignment of P31062 with c2vz4A_

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Job Description | P31062
Confidence | 96.07% | Date | Thu Jan 5 11:46:59 GMT 2012
Rank | 8 | Aligned Residues | 46
% Identity | 20% | Template | c2vz4A_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:hth-type transcriptional activator tipa; | PDBTitle: the n-terminal domain of merr-like protein tipal bound to2 promoter dna
Resolution | 2.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | V | N | K | K | Q | L | A | D | I | F | G | A | S | I | R | T | I | Q | N | W | Q | E | Q | G | M | P | V | L | R | G | G | G | K | G | N | E | V | L | Y | D | S | A | A | V | I | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Y | S | V | G | Q | V | A | G | F | A | G | V | T | V | R | T | L | H | H | Y | D | D | I | G | L | L | V | P | S | E | R | S | H | A | G | H | R | R | Y | S | D | A | D | L | D | R
Template Known Secondary structure |  | B |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  | T | S | S |  |  | S |  |  |  | S | S |  |  |  |  | B |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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