BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (34 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_C1P5Z9 Putative protein ymiB n=3 Tax=Enterobacteriaceae...    69   5e-11

>UniRef50_C1P5Z9 Putative protein ymiB n=3 Tax=Enterobacteriaceae RepID=YMIB_ECOLI
          Length = 34

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/34 (100%), Positives = 34/34 (100%)

Query: 1  MTYMKLTAAKRIVFFIYLFVIQFWKNASFQTKVS 34
          MTYMKLTAAKRIVFFIYLFVIQFWKNASFQTKVS
Sbjct: 1  MTYMKLTAAKRIVFFIYLFVIQFWKNASFQTKVS 34


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

Sequences not found previously or not previously below threshold:

UniRef50_C1P5Z9 Putative protein ymiB n=3 Tax=Enterobacteriaceae...    39   0.036


CONVERGED!
>UniRef50_C1P5Z9 Putative protein ymiB n=3 Tax=Enterobacteriaceae RepID=YMIB_ECOLI
          Length = 34

 Score = 39.2 bits (90), Expect = 0.036,   Method: Composition-based stats.
 Identities = 34/34 (100%), Positives = 34/34 (100%)

Query: 1  MTYMKLTAAKRIVFFIYLFVIQFWKNASFQTKVS 34
          MTYMKLTAAKRIVFFIYLFVIQFWKNASFQTKVS
Sbjct: 1  MTYMKLTAAKRIVFFIYLFVIQFWKNASFQTKVS 34


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.338    0.138    0.423 

Lambda     K      H
   0.267   0.0451    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,292,484
Number of Sequences: 3077464
Number of extensions: 2795353
Number of successful extensions: 14970
Number of sequences better than 1.0e-01: 1
Number of HSP's better than  0.1 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14968
Number of HSP's gapped (non-prelim): 2
length of query: 34
length of database: 1,040,396,356
effective HSP length: 8
effective length of query: 26
effective length of database: 1,015,776,644
effective search space: 26410192744
effective search space used: 26410192744
T: 11
A: 40
X1: 16 ( 7.8 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 87 (38.0 bits)