Phyre 2 Results for P11551

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P11551
Date | Thu Jan 5 11:32:44 GMT 2012
Unique Job ID | fd5464275072c737

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3o7pA_
Top template information
PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
Confidence and coverage
Confidence: | 100.0% | Coverage: | 94%
410 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | G | N | T | S | I | Q | T | Q | S | Y | R | A | V | D | K | D | A | G | Q | S | R | S | Y | I | I | P | F | A | L | L | C | S | L | F | F | L | W | A | V | A | N | N | L | N | D | I | L | L | P | Q | F | Q | Q | A | F | T | L | T | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | F | Q | A | G | L | I | Q | S | A | F | Y | F | G | Y | F | I | I | P | I | P | A | G | I | L | M | K | K | L | S | Y | K | A | G | I | I | T | G | L | F | L | Y | A | L | G | A | A | L | F | W | P | A | A | E | I | M | N | Y | T | L | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | V | G | L | F | I | I | A | A | G | L | G | C | L | E | T | A | A | N | P | F | V | T | V | L | G | P | E | S | S | G | H | F | R | L | N | L | A | Q | T | F | N | S | F | G | A | I | I | A | V | V | F | G | Q | S | L | I | L | S | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | V | P | H | Q | S | Q | D | V | L | D | K | M | S | P | E | Q | L | S | A | Y | K | H | S | L | V | L | S | V | Q | T | P | Y | M | I | I | V | A | I | V | L | L | V | A | L | L | I | M | L | T | K | F | P | A | L | Q | S | D | N | H | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  | ? | ? | ? |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | D | A | K | Q | G | S | F | S | A | S | L | S | R | L | A | R | I | R | H | W | R | W | A | V | L | A | Q | F | C | Y | V | G | A | Q | T | A | C | W | S | Y | L | I | R | Y | A | V | E | E | I | P | G | M | T | A | G | F | A | A | N | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | L | T | G | T | M | V | C | F | F | I | G | R | F | T | G | T | W | L | I | S | R | F | A | P | H | K | V | L | A | A | Y | A | L | I | A | M | A | L | C | L | I | S | A | F | A | G | G | H | V | G | L | I | A | L | T | L | C | S | A | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | M | S | I | Q | Y | P | T | I | F | S | L | G | I | K | N | L | G | Q | D | T | K | Y | G | S | S | F | I | V | M | T | I | I | G | G | G | I | V | T | P | V | M | G | F | V | S | D | A | A | G | N | I | P | T | A | E | L | I | P | A | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | .
Sequence |  | C | F | A | V | I | F | I | F | A | R | F | R | S | Q | T | A | T | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3o7pA_ |

### PDB 3o7p chain A

Region: 22 - 435
Aligned: 410
Modelled: 410
Confidence: 100.0%
Identity: 96%
PDB header:transport protein
Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)

Phyre2
2 |
| d1pw4a_ |

### PDB 1pw4 chain A

Region: 3 - 435
Aligned: 411
Modelled: 412
Confidence: 100.0%
Identity: 8%
Fold: MFS general substrate transporter
Superfamily: MFS general substrate transporter
Family: Glycerol-3-phosphate transporter

Phyre2
3 |
| c2gfpA_ |

### PDB 2gfp chain A

Region: 28 - 425
Aligned: 368
Modelled: 371
Confidence: 100.0%
Identity: 10%
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli

Phyre2
4 |
| d1pv7a_ |

### PDB 1pv7 chain A

Region: 20 - 436
Aligned: 390
Modelled: 393
Confidence: 100.0%
Identity: 10%
Fold: MFS general substrate transporter
Superfamily: MFS general substrate transporter
Family: LacY-like proton/sugar symporter

Phyre2
5 |
| c2xutC_ |

### PDB 2xut chain C

Region: 29 - 429
Aligned: 399
Modelled: 401
Confidence: 100.0%
Identity: 13%
PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.

Phyre2
6 |
| c3b9yA_ |

### PDB 3b9y chain A

Region: 11 - 247
Aligned: 228
Modelled: 235
Confidence: 70.4%
Identity: 11%
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein

Phyre2
7 |
| c2g9pA_ |

### PDB 2g9p chain A

Region: 80 - 93
Aligned: 14
Modelled: 14
Confidence: 15.4%
Identity: 43%
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a;
PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom

Phyre2
8 |
| c2bbjB_ |

### PDB 2bbj chain B

Region: 368 - 435
Aligned: 68
Modelled: 68
Confidence: 10.9%
Identity: 6%
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter

Phyre2
9 |
| d3proc1 |

### PDB 3pro chain C domain 1

Region: 48 - 89
Aligned: 42
Modelled: 42
Confidence: 8.9%
Identity: 7%
Fold: Alpha-lytic protease prodomain-like
Superfamily: Alpha-lytic protease prodomain
Family: Alpha-lytic protease prodomain

Phyre2
10 |
| c3hd6A_ |

### PDB 3hd6 chain A

Region: 9 - 235
Aligned: 221
Modelled: 227
Confidence: 8.6%
Identity: 12%
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg

Phyre2
11 |
| d2iuba2 |

### PDB 2iub chain A domain 2

Region: 395 - 435
Aligned: 41
Modelled: 41
Confidence: 8.2%
Identity: 10%
Fold: Transmembrane helix hairpin
Superfamily: Magnesium transport protein CorA, transmembrane region
Family: Magnesium transport protein CorA, transmembrane region

Phyre2
12 |
| c3arct_ |

### PDB 3arc chain T

Region: 412 - 435
Aligned: 24
Modelled: 24
Confidence: 6.9%
Identity: 21%
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution

Phyre2
13 |
| c3a0bT_ |

### PDB 3a0b chain T

Region: 412 - 435
Aligned: 24
Modelled: 24
Confidence: 6.9%
Identity: 21%
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of br-substituted photosystem ii complex

Phyre2
14 |
| c3emlA_ |

### PDB 3eml chain A

Region: 4 - 88
Aligned: 85
Modelled: 85
Confidence: 6.5%
Identity: 11%
PDB header:membrane protein, receptor
Chain: A: PDB Molecule:human adenosine a2a receptor/t4 lysozyme chimera;
PDBTitle: the 2.6 a crystal structure of a human a2a adenosine2 receptor bound to zm241385.

Phyre2
15 |
| c3hfxA_ |

### PDB 3hfx chain A

Region: 394 - 438
Aligned: 45
Modelled: 45
Confidence: 6.4%
Identity: 13%
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter

Phyre2
16 |
| c3a0hT_ |

### PDB 3a0h chain T

Region: 412 - 435
Aligned: 24
Modelled: 24
Confidence: 5.3%
Identity: 21%
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of i-substituted photosystem ii complex

Phyre2
17 |
| d2axtt1 |

### PDB 2axt chain T domain 1

Region: 412 - 435
Aligned: 24
Modelled: 24
Confidence: 5.3%
Identity: 21%
Fold: Single transmembrane helix
Superfamily: Photosystem II reaction center protein T, PsbT
Family: PsbT-like

Phyre2
18 |
| c3kziT_ |

### PDB 3kzi chain T

Region: 412 - 435
Aligned: 24
Modelled: 24
Confidence: 5.3%
Identity: 21%
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii

Phyre2
19 |
| c3a0ht_ |

### PDB 3a0h chain T

Region: 412 - 435
Aligned: 24
Modelled: 24
Confidence: 5.3%
Identity: 21%
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of i-substituted photosystem ii complex

Phyre2
20 |
| c2axtT_ |

### PDB 2axt chain T

Region: 412 - 435
Aligned: 24
Modelled: 24
Confidence: 5.3%
Identity: 21%
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center t protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3o7pA_ |
|  | 100.0 | 96 | PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
2 | d1pw4a_ |
|  | 100.0 | 8 | Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter
3 | c2gfpA_ |
|  | 100.0 | 10 | PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
4 | d1pv7a_ |
|  | 100.0 | 10 | Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter
5 | c2xutC_ |
|  | 100.0 | 13 | PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.
6 | c3b9yA_ |
|  | 70.4 | 11 | PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein
7 | c2g9pA_ |
|  | 15.4 | 43 | PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom
8 | c2bbjB_ |
|  | 10.9 | 6 | PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter
9 | d3proc1 |
|  | 8.9 | 7 | Fold:Alpha-lytic protease prodomain-like Superfamily:Alpha-lytic protease prodomain Family:Alpha-lytic protease prodomain
10 | c3hd6A_ |
|  | 8.6 | 12 | PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
11 | d2iuba2 |
|  | 8.2 | 10 | Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region
12 | c3arct_ |
|  | 6.9 | 21 | PDB header:electron transport, photosynthesis Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
13 | c3a0bT_ |
|  | 6.9 | 21 | PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of br-substituted photosystem ii complex
14 | c3emlA_ |
|  | 6.5 | 11 | PDB header:membrane protein, receptor Chain: A: PDB Molecule:human adenosine a2a receptor/t4 lysozyme chimera; PDBTitle: the 2.6 a crystal structure of a human a2a adenosine2 receptor bound to zm241385.
15 | c3hfxA_ |
|  | 6.4 | 13 | PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter
16 | c3a0hT_ |
|  | 5.3 | 21 | PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of i-substituted photosystem ii complex
17 | d2axtt1 |
|  | 5.3 | 21 | Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein T, PsbT Family:PsbT-like
18 | c3kziT_ |
|  | 5.3 | 21 | PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
19 | c3a0ht_ |
|  | 5.3 | 21 | PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of i-substituted photosystem ii complex
20 | c2axtT_ |
|  | 5.3 | 21 | PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center t protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
21 | c2axtt_ |
| not modelled | 5.3 | 21 | PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center t protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
22 | c3arcT_ |
| not modelled | 5.3 | 21 | PDB header:electron transport, photosynthesis Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
23 | c3bz1T_ |
| not modelled | 5.3 | 21 | PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer
24 | c3prrT_ |
| not modelled | 5.3 | 21 | PDB header:photosynthesis Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
25 | c3prqT_ |
| not modelled | 5.3 | 21 | PDB header:photosynthesis Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
26 | c3bz2T_ |
| not modelled | 5.3 | 21 | PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer
27 | c3a0bt_ |
| not modelled | 5.1 | 22 | PDB header:electron transport Chain: T: PDB Molecule:photosystem ii reaction center protein t; PDBTitle: crystal structure of br-substituted photosystem ii complex
28 | c1s5lT_ |
| not modelled | 5.1 | 22 | PDB header:photosynthesis Chain: T: PDB Molecule:photosystem ii psbt protein; PDBTitle: architecture of the photosynthetic oxygen evolving center

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0