 |
| Job Description | P77615 | | Confidence | 82.22% | Date | Thu Jan 5 12:31:04 GMT 2012 |
| Rank | 436 | Aligned Residues | 33 |
| % Identity | 21% | Template | d1rp3a2 |
| SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
| Resolution | 2.30 |
|
|   |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . |
| Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
T | I | Y | D | I | A | R | V | A | G | V | S | K | S | T | V | S | R | V | L | N | K | Q | T | N | I | S | P | E | A | R | E | K | V | L | R | A | I | E | E |
| Query Conservation |   |
|
|   |
|
|
|   |   |
|
|
|
|   |   |
|
|
|
|
|
|
|   |   |   |   |
|
|   |   |
|
|   |
|
|   |   |   |
|   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |   |
|
|
|   |   |
|   |
|
|   |   |
|
|   |   |   |   |   | . | . | . | . | . | . | . |
|
|   |   |   |
|
|   |   |
|   |   |
| Template Sequence |   |
P | A | K | E | V | A | K | I | L | E | T | S | V | S | R | V | S | Q | L | K | A | . |
. |
. |
. |
. |
. |
. |
K | A | L | E | R | L | R | E | M | L | S | N |
| Template Known Secondary structure |   |
|  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
| Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
202 | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | 230 | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|