Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	K	R	R	Y	L	T	G	K	E	V	Q	A	M	M	Q	A	V	C	Y	G	A	T	G	A	R	D	Y	C	L	I	L	L	A	Y	R	H	G	M	R	I	S	E	L	L	D	L	H	Y	Q	D	L	D	L	N	E	G	R	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	I	R	R	L	K	N	G	F	S	T	V	H	P	L	R	F	D	E	R	E	A	V	E	R	W	T	Q	E	R	A	N	W	K	G	A	D	R	T	D	A	I	F	I	S	R	R	G	S	R	L	S	R	Q	Q	A	Y	R	I	I
Secondary structure
SS confidence
Disorder																																		?		?	?	?	?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	D	A	G	I	E	A	G	T	V	T	Q	T	H	P	H	M	L	R	H	A	C	G	Y	E	L	A	E	R	G	A	D	T	R	L	I	Q	D	Y	L	G	H	R	N	I	R	H	T	V	R	Y	T	A	S	N	A	A	R	F	A
Secondary structure
SS confidence
Disorder												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Sequence		G	L	W	E	R	N	N	L	I	N	E	K	L	K	R	E	E	V
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1a0p chain A domain 2 Region: 5 - 184 Aligned: 178 Modelled: 180 Confidence: 99.9% Identity: 25% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 3nkh chain B Region: 1 - 189 Aligned: 189 Modelled: 189 Confidence: 99.9% Identity: 19% PDB header:recombination Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus Phyre2 PDB 1aih chain A Region: 2 - 188 Aligned: 164 Modelled: 165 Confidence: 99.9% Identity: 16% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1f44 chain A domain 2 Region: 1 - 187 Aligned: 187 Modelled: 187 Confidence: 99.9% Identity: 10% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1ae9 chain A Region: 3 - 175 Aligned: 169 Modelled: 173 Confidence: 99.9% Identity: 15% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1z1b chain A Region: 2 - 173 Aligned: 167 Modelled: 172 Confidence: 99.9% Identity: 20% PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Phyre2 PDB 1p7d chain A Region: 2 - 177 Aligned: 173 Modelled: 176 Confidence: 99.8% Identity: 16% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 1a0p chain A Region: 1 - 184 Aligned: 182 Modelled: 184 Confidence: 99.8% Identity: 23% PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd Phyre2 PDB 1ma7 chain A Region: 2 - 187 Aligned: 186 Modelled: 186 Confidence: 99.8% Identity: 13% PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 Phyre2 PDB 1crx chain A Region: 2 - 187 Aligned: 186 Modelled: 184 Confidence: 99.8% Identity: 15% PDB header:replication/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: cre recombinase/dna complex reaction intermediate i Phyre2 PDB 5crx chain B domain 2 Region: 1 - 161 Aligned: 161 Modelled: 161 Confidence: 99.8% Identity: 14% Fold: DNA breaking-rejoining enzymes Superfamily: DNA breaking-rejoining enzymes Family: Lambda integrase-like, catalytic core Phyre2 PDB 2a3v chain A Region: 22 - 175 Aligned: 154 Modelled: 154 Confidence: 99.6% Identity: 27% PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination Phyre2 PDB 2v6e chain B Region: 9 - 171 Aligned: 163 Modelled: 163 Confidence: 97.4% Identity: 12% PDB header:hydrolase Chain: B: PDB Molecule:protelemorase; PDBTitle: protelomerase telk complexed with substrate dna Phyre2 PDB 2f4q chain A Region: 30 - 174 Aligned: 138 Modelled: 143 Confidence: 91.1% Identity: 14% PDB header:isomerase Chain: A: PDB Molecule:type i topoisomerase, putative; PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib Phyre2 PDB 2h7f chain X Region: 30 - 173 Aligned: 128 Modelled: 144 Confidence: 83.6% Identity: 14% PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna Phyre2 PDB 1khd chain A domain 1 Region: 3 - 48 Aligned: 46 Modelled: 46 Confidence: 72.2% Identity: 20% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1uou chain A domain 1 Region: 7 - 48 Aligned: 42 Modelled: 42 Confidence: 62.2% Identity: 26% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1v8g chain A domain 1 Region: 3 - 48 Aligned: 46 Modelled: 46 Confidence: 61.0% Identity: 22% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 2tpt chain A domain 1 Region: 5 - 48 Aligned: 44 Modelled: 44 Confidence: 56.1% Identity: 14% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 PDB 1brw chain A domain 1 Region: 3 - 48 Aligned: 46 Modelled: 46 Confidence: 50.7% Identity: 20% Fold: Methionine synthase domain-like Superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Phyre2 1 d1a0pa2 2 c3nkhB_ 3 d1aiha_ 4 d1f44a2 5 d1ae9a_ 6 c1z1bA_ 7 d1p7da_ 8 c1a0pA_ 9 c1ma7A_ 10 c1crxA_ 11 d5crxb2 12 c2a3vA_ 13 c2v6eB_ 14 c2f4qA_ 15 c2h7fX_ 16 d1khda1 17 d1uoua1 18 d1v8ga1 19 d2tpta1 20 d1brwa1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1a0pa2 99.9 25 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 2 c3nkhB_ 99.9 19 PDB header:recombination Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus 3 d1aiha_ 99.9 16 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 4 d1f44a2 99.9 10 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 5 d1ae9a_ 99.9 15 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 6 c1z1bA_ 99.9 20 PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site 7 d1p7da_ 99.8 16 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 8 c1a0pA_ 99.8 23 PDB header:dna recombination Chain: A: PDB Molecule:site-specific recombinase xerd; PDBTitle: site-specific recombinase, xerd 9 c1ma7A_ 99.8 13 PDB header:hydrolase, ligase/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27 10 c1crxA_ 99.8 15 PDB header:replication/dna Chain: A: PDB Molecule:cre recombinase; PDBTitle: cre recombinase/dna complex reaction intermediate i 11 d5crxb2 99.8 14 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 12 c2a3vA_ 99.6 27 PDB header:recombination Chain: A: PDB Molecule:site-specific recombinase inti4; PDBTitle: structural basis for broad dna-specificity in integron2 recombination 13 c2v6eB_ 97.4 12 PDB header:hydrolase Chain: B: PDB Molecule:protelemorase; PDBTitle: protelomerase telk complexed with substrate dna 14 c2f4qA_ 91.1 14 PDB header:isomerase Chain: A: PDB Molecule:type i topoisomerase, putative; PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib 15 c2h7fX_ 83.6 14 PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna 16 d1khda1 72.2 20 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 17 d1uoua1 62.2 26 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 18 d1v8ga1 61.0 22 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 19 d2tpta1 56.1 14 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 20 d1brwa1 50.7 20 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 21 d1o17a1 not modelled 43.0 22 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 22 c2dsjA_ not modelled 40.5 16 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 23 d1s7oa_ not modelled 36.8 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:YlxM/p13-like 24 c2j0fC_ not modelled 35.8 26 PDB header:transferase Chain: C: PDB Molecule:thymidine phosphorylase; PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design 25 c1v8gB_ not modelled 35.6 21 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8 26 c3h5qA_ not modelled 35.4 16 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase; PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus 27 c1otpA_ not modelled 31.1 14 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 28 c1brwB_ not modelled 30.4 21 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 29 c1vquB_ not modelled 27.9 20 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution 30 d1xsva_ not modelled 27.4 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:YlxM/p13-like 31 d1a41a_ not modelled 26.7 15 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Eukaryotic DNA topoisomerase I, catalytic core 32 c2bpqB_ not modelled 26.3 16 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure) 33 c2b9sA_ not modelled 23.2 12 PDB header:isomerase/dna Chain: A: PDB Molecule:topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex 34 c1khdD_ not modelled 20.2 20 PDB header:transferase Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum) 35 d1rr8c1 not modelled 20.2 18 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Eukaryotic DNA topoisomerase I, catalytic core 36 d2elca1 not modelled 17.2 23 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 37 c1o17A_ not modelled 16.8 22 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 38 d2auwa1 not modelled 16.7 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE0471 C-terminal domain-like 39 d1e3oc1 not modelled 16.5 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 40 d1f43a_ not modelled 14.7 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 41 d1hdpa_ not modelled 14.7 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 42 c2f9jP_ not modelled 14.3 36 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 43 c3mzyA_ not modelled 14.1 13 PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a 44 c2o8xA_ not modelled 13.8 8 PDB header:transcription Chain: A: PDB Molecule:probable rna polymerase sigma-c factor; PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc 45 d2ecba1 not modelled 13.6 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 46 d1yu5x1 not modelled 13.5 20 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 47 c3narA_ not modelled 13.4 14 PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 1; PDBTitle: crystal structure of zhx1 hd4 (zinc-fingers and homeoboxes protein 1,2 homeodomain 4) 48 d1zara1 not modelled 13.3 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rio2 serine protein kinase N-terminal domain 49 d1hmja_ not modelled 13.3 10 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 50 c2l9rA_ not modelled 13.2 7 PDB header:transcription Chain: A: PDB Molecule:homeobox protein nkx-3.1; PDBTitle: solution nmr structure of homeobox domain of homeobox protein nkx-3.12 from homo sapiens, northeast structural genomics consortium target3 hr6470a 51 d1k4ta2 not modelled 13.1 18 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Eukaryotic DNA topoisomerase I, catalytic core 52 d1qzpa_ not modelled 12.9 13 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 53 c2da5A_ not modelled 12.5 16 PDB header:dna binding protein Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3; PDBTitle: solution structure of the second homeobox domain of zinc2 fingers and homeoboxes protein 3 (triple homeobox 13 protein) 54 c1p4eB_ not modelled 12.5 12 PDB header:dna binding protein/recombination/dna Chain: B: PDB Molecule:recombinase flp protein; PDBTitle: flpe w330f mutant-dna holliday junction complex 55 c2k6nA_ not modelled 12.4 20 PDB header:structural protein Chain: A: PDB Molecule:supervillin; PDBTitle: solution structure of human supervillin headpiece, minimized2 average 56 d1p4ea2 not modelled 12.2 12 Fold:DNA breaking-rejoining enzymes Superfamily:DNA breaking-rejoining enzymes Family:Lambda integrase-like, catalytic core 57 d1xg1a1 not modelled 12.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:DNA-binding domain of telomeric protein 58 d1gt0c1 not modelled 12.0 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 59 d1ujsa_ not modelled 11.9 20 Fold:VHP, Villin headpiece domain Superfamily:VHP, Villin headpiece domain Family:VHP, Villin headpiece domain 60 d1ijwc_ not modelled 11.7 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 61 d1dzfa2 not modelled 11.5 11 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 62 d1fjlb_ not modelled 11.2 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 63 c2l3xA_ not modelled 10.8 27 PDB header:protein binding Chain: A: PDB Molecule:ablim2 protein; PDBTitle: villin head piece domain of human ablim2 64 d2hsga1 not modelled 10.7 11 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 65 d2cqxa1 not modelled 10.5 4 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 66 d1w0ta_ not modelled 10.1 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:DNA-binding domain of telomeric protein 67 d1eika_ not modelled 10.1 8 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 68 d1octc1 not modelled 9.8 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 69 c3h0gE_ not modelled 9.6 15 PDB header:transcription Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 70 d1sfka_ not modelled 9.3 10 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 71 d1ocpa_ not modelled 9.1 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 72 c2dmsA_ not modelled 8.5 9 PDB header:dna binding protein Chain: A: PDB Molecule:homeobox protein otx2; PDBTitle: solution structure of the homeobox domain of homeobox2 protein otx2 73 d1au7a1 not modelled 8.5 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 74 d1jhfa1 not modelled 8.3 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain 75 d1bw5a_ not modelled 7.8 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 76 d1ahdp_ not modelled 7.8 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 77 d1s7ea1 not modelled 7.5 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 78 d2ecca1 not modelled 7.4 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 79 d2e1oa1 not modelled 7.3 5 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 80 d1ig7a_ not modelled 7.1 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 81 d1sfkb_ not modelled 7.1 4 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 82 c2cg5A_ not modelled 6.9 20 PDB header:transferase/hydrolase Chain: A: PDB Molecule:l-aminoadipate-semialdehyde dehydrogenase- PDBTitle: structure of aminoadipate-semialdehyde dehydrogenase-2 phosphopantetheinyl transferase in complex with cytosolic3 acyl carrier protein and coenzyme a 83 c3hugA_ not modelled 6.9 15 PDB header:transcription/membrane protein Chain: A: PDB Molecule:rna polymerase sigma factor; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl 84 c2nogA_ not modelled 6.9 14 PDB header:dna binding protein Chain: A: PDB Molecule:iswi protein; PDBTitle: sant domain structure of xenopus remodeling factor iswi 85 c2dn0A_ not modelled 6.7 12 PDB header:transcription Chain: A: PDB Molecule:zinc fingers and homeoboxes protein 3; PDBTitle: solution structure of the second homeobox domain of human2 zinc fingers and homeoboxes protein 3 86 d1b33a_ not modelled 6.6 22 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 87 d1efaa1 not modelled 6.5 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:GalR/LacI-like bacterial regulator 88 d1w0ua_ not modelled 6.4 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:DNA-binding domain of telomeric protein 89 d1vnda_ not modelled 6.1 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 90 d1p7ia_ not modelled 6.1 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 91 c2dmqA_ not modelled 6.1 16 PDB header:dna binding protein Chain: A: PDB Molecule:lim/homeobox protein lhx9; PDBTitle: solution structure of the homeobox domain of lim/homeobox2 protein lhx9 92 c3jstA_ not modelled 5.9 28 PDB header:lyase Chain: A: PDB Molecule:putative pterin-4-alpha-carbinolamine dehydratase; PDBTitle: crystal structure of transcriptional coactivator/pterin dehydratase2 from brucella melitensis 93 d1yz8p1 not modelled 5.9 9 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 94 c1y1yE_ not modelled 5.9 15 PDB header:transferase/transcription/dna-rna hybrid Chain: E: PDB Molecule:dna-directed rna polymerases i, ii, and iii 27 PDBTitle: rna polymerase ii-tfiis-dna/rna complex 95 d1eyxa_ not modelled 5.9 6 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins 96 c2l4dA_ not modelled 5.7 27 PDB header:electron transport Chain: A: PDB Molecule:sco1/senc family protein/cytochrome c; PDBTitle: cytochrome c domain of pp3183 protein from pseudomonas putida 97 d1fjla_ not modelled 5.7 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 98 d1h1oa1 not modelled 5.6 11 Fold:Cytochrome c Superfamily:Cytochrome c Family:Two-domain cytochrome c 99 d1cpcb_ not modelled 5.6 22 Fold:Globin-like Superfamily:Globin-like Family:Phycocyanin-like phycobilisome proteins

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0