BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (342 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P38683 Periplasmic protein torT n=101 Tax=Bacteria RepI... 703 0.0 UniRef50_UPI000197BE16 TMAO reductase system periplasmic protein... 494 e-138 UniRef50_Q7MEN8 ABC-type sugar transport system, periplasmic com... 244 4e-63 UniRef50_C3M5M3 Periplasmic protein TorT n=33 Tax=Vibrio RepID=C... 243 6e-63 UniRef50_Q484F8 Periplasmic protein TorT n=2 Tax=Alteromonadales... 238 3e-61 UniRef50_Q1GM88 Periplasmic binding protein/LacI transcriptional... 218 3e-55 UniRef50_B8IKX9 Periplasmic binding protein/LacI transcriptional... 208 2e-52 UniRef50_B6QZG8 TMAO reductase system periplasmic protein TorT n... 206 7e-52 UniRef50_A3JZ93 Periplasmic sensory protein associated with the ... 203 7e-51 UniRef50_A3QGS0 TonB box domain protein n=16 Tax=Shewanella RepI... 196 7e-49 UniRef50_C4ZP40 Periplasmic binding protein/LacI transcriptional... 194 5e-48 UniRef50_A6FN89 Periplasmic binding protein/LacI transcriptional... 189 9e-47 UniRef50_A9D600 Periplasmic protein TorT n=1 Tax=Shewanella bent... 174 3e-42 UniRef50_A9AX43 Periplasmic binding protein/LacI transcriptional... 166 1e-39 UniRef50_A1FB23 Tmao reductase system periplasmic protein tort (... 159 1e-37 UniRef50_B9L4R0 Periplasmic binding protein/LacI transcriptional... 156 1e-36 UniRef50_Q162F2 Periplasmic protein TorT n=3 Tax=Rhodobacteracea... 153 8e-36 UniRef50_A1S2M5 Periplasmic binding protein/LacI transcriptional... 143 1e-32 UniRef50_A6M1W5 Periplasmic binding protein/LacI transcriptional... 137 5e-31 UniRef50_C5V4K8 Periplasmic binding protein/LacI transcriptional... 120 6e-26 UniRef50_A4F0B1 Periplasmic sensory protein associated with the ... 100 9e-20 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 81 5e-14 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 79 2e-13 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 79 2e-13 UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional... 69 3e-10 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 67 8e-10 UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminoc... 64 1e-08 UniRef50_C6CXU6 Periplasmic binding protein/LacI transcriptional... 62 4e-08 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 62 4e-08 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 61 7e-08 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 60 2e-07 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 59 3e-07 UniRef50_A9L4Q6 Putative uncharacterized protein n=1 Tax=Shewane... 58 5e-07 UniRef50_B7DPH3 Periplasmic binding protein/LacI transcriptional... 58 6e-07 UniRef50_A9KK42 Periplasmic binding protein/LacI transcriptional... 58 6e-07 UniRef50_A6M1U2 Periplasmic binding protein/LacI transcriptional... 57 7e-07 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 57 9e-07 UniRef50_Q7WIY8 Putative sugar ABC transport system, substrate-b... 57 1e-06 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 57 1e-06 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 56 2e-06 UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei... 55 3e-06 UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostri... 55 3e-06 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 55 3e-06 UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic com... 55 4e-06 UniRef50_Q89SY1 ABC transporter sugar-binding protein n=4 Tax=Rh... 55 5e-06 UniRef50_C5RJT9 Periplasmic binding protein/LacI transcriptional... 54 6e-06 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 54 6e-06 UniRef50_UPI0001C3100C periplasmic binding protein/LacI transcri... 54 1e-05 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 53 2e-05 UniRef50_A6BDJ9 Putative uncharacterized protein n=1 Tax=Dorea l... 52 2e-05 UniRef50_Q6W1J5 Putative RbsB, ABC-type sugar transport system, ... 52 3e-05 UniRef50_C6J068 ABC-type sugar transport system n=1 Tax=Paenibac... 51 5e-05 UniRef50_B5WB27 Periplasmic binding protein/LacI transcriptional... 51 5e-05 UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional... 51 6e-05 UniRef50_Q5IH17 PydC n=1 Tax=Rhizobium sp. TAL1145 RepID=Q5IH17_... 51 7e-05 UniRef50_B9TFQ8 Putative uncharacterized protein (Fragment) n=1 ... 51 7e-05 UniRef50_C8STD2 Monosaccharide-transporting ATPase n=1 Tax=Mesor... 51 7e-05 UniRef50_A7VYE8 Putative uncharacterized protein n=1 Tax=Clostri... 50 9e-05 UniRef50_C3JFS7 ABC transporter, nucleotide binding/ATPase prote... 50 9e-05 UniRef50_A4IT20 ABC transporter sugar-binding protein n=9 Tax=Ba... 50 1e-04 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 50 1e-04 UniRef50_B0NFD0 Putative uncharacterized protein n=1 Tax=Clostri... 50 1e-04 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 49 2e-04 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 49 2e-04 UniRef50_C0RMD7 Rhizopine-binding protein n=23 Tax=Brucella RepI... 49 2e-04 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 49 3e-04 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 49 3e-04 UniRef50_C8QCH7 Transcriptional regulator, LacI family n=1 Tax=P... 48 6e-04 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 48 6e-04 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 48 7e-04 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 47 7e-04 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 47 8e-04 UniRef50_UPI0001973330 periplasmic binding protein/LacI transcri... 47 9e-04 UniRef50_D1CAQ1 ABC-type sugar transport system periplasmic comp... 47 0.001 UniRef50_Q0SEC5 Transcriptional regulator, LacI family protein n... 46 0.002 UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerot... 46 0.002 UniRef50_A9CGI7 Transcriptional repressor, LacI family n=1 Tax=A... 46 0.002 UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional... 45 0.003 UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional... 45 0.003 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 45 0.004 UniRef50_B0K232 Periplasmic binding protein/LacI transcriptional... 45 0.005 UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str... 44 0.007 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 44 0.007 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 44 0.008 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 44 0.008 UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding prot... 44 0.008 UniRef50_A9KMR5 Putative solute-binding component of ABC transpo... 44 0.010 UniRef50_B5WJX6 Periplasmic binding protein/LacI transcriptional... 44 0.010 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 44 0.011 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 43 0.014 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 43 0.015 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 43 0.018 UniRef50_C2BT70 Ribose ABC superfamily ATP binding cassette tran... 43 0.019 UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional... 42 0.023 UniRef50_B5K960 ABC transporter, periplasmic sugar binding prote... 42 0.027 UniRef50_P55568 Probable ABC transporter periplasmic-binding pro... 42 0.028 UniRef50_A6DTR7 Sugar (D-ribose) ABC transporter, periplasmic su... 42 0.028 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 42 0.041 UniRef50_Q89GL8 ABC transporter substrate-binding protein n=1 Ta... 42 0.041 UniRef50_D1PLY2 Putative periplasmic sugar-binding protein n=1 T... 42 0.041 UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional... 42 0.041 UniRef50_C3JGG7 DNA-binding protein n=4 Tax=Actinomycetales RepI... 42 0.043 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 42 0.043 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 42 0.046 UniRef50_B8CZL4 ABC-type sugar transport system, periplasmic com... 41 0.048 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 41 0.052 UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional... 41 0.055 UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional... 41 0.056 UniRef50_Q7NV24 Probable ribose ABC transporter, substrate bindi... 41 0.056 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 41 0.059 UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri... 41 0.073 UniRef50_C3KLX6 Putative transcriptional regulatory protein, Lac... 41 0.074 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 40 0.085 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 40 0.089 >UniRef50_P38683 Periplasmic protein torT n=101 Tax=Bacteria RepID=TORT_ECOLI Length = 342 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/342 (100%), Positives = 342/342 (100%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL Sbjct: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK 120 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK Sbjct: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK 120 Query: 121 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG 180 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG Sbjct: 121 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG 180 Query: 181 SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM Sbjct: 181 SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 Query: 241 GEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD 300 GEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD Sbjct: 241 GEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD 300 Query: 301 NVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK 342 NVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK Sbjct: 301 NVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK 342 >UniRef50_UPI000197BE16 TMAO reductase system periplasmic protein TorT n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BE16 Length = 343 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 247/345 (71%), Positives = 285/345 (82%), Gaps = 5/345 (1%) Query: 1 MRVLLFLLL---SLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDS 57 MRVL+ LL SL L +L++W D HF Q P+ A +AWKLCALYPSLKDS Sbjct: 1 MRVLILLLFTFHSLLSLATAHNSSLIQWSDTLHFDRQPHDPVTATKAWKLCALYPSLKDS 60 Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD 117 YWLS+NYGMQ+AA+ YGV+L VLEAGGY+QLATQQ QI QC+QWGA+AILLGSSTT+FP+ Sbjct: 61 YWLSINYGMQKAAKHYGVNLNVLEAGGYNQLATQQKQITQCQQWGADAILLGSSTTTFPN 120 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 L + V + PVIE++NA +K+RVGVPWFQMGYQPGRYLVQW+ GKPL VLLMPGP N Sbjct: 121 LSQLVENTPVIEVINATHDKTIKTRVGVPWFQMGYQPGRYLVQWSQGKPLKVLLMPGPLN 180 Query: 178 AGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 AGGS EM +GFR AIAGS V+IVD+A GDND+E+QRNLL EMLER+P+ DVV GTAIAAE Sbjct: 181 AGGSHEMEQGFREAIAGSQVQIVDVAQGDNDLEVQRNLLHEMLERNPDTDVVVGTAIAAE 240 Query: 238 AAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQS 297 AAMGEGRNL PL +VSFYLSHQVYRGLKRGR+IMAASDQMVWQGEL +EQAI+ LQ Q Sbjct: 241 AAMGEGRNLTKPLNIVSFYLSHQVYRGLKRGRIIMAASDQMVWQGELVIEQAIKVLQKQP 300 Query: 298 VSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK 342 V +N+SPPILVLT +NAD EH+R SLSPGGFRPV YQ+TSAAKK Sbjct: 301 VPNNISPPILVLTQQNADSEHLRNSLSPGGFRPV--YQYTSAAKK 343 >UniRef50_Q7MEN8 ABC-type sugar transport system, periplasmic component n=29 Tax=Vibrionales RepID=Q7MEN8_VIBVY Length = 337 Score = 244 bits (623), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 137/308 (44%), Positives = 195/308 (63%), Gaps = 14/308 (4%) Query: 36 STPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI 95 STP+ A A KLCA+YP LKDSYWLS+NYGM A + V+L+VLEAGGY A QQ Q+ Sbjct: 25 STPVYA--AEKLCAIYPHLKDSYWLSVNYGMVSEAEKQKVNLRVLEAGGYPNTAKQQQQL 82 Query: 96 DQCKQWGAEAILLGS-STTSF-PDLQKQVASLPVIELVNAI-----DAPQVKSRVGVPWF 148 C +WGA+AILLG+ +F +LQ+ S+P+ VN + + +K VGV W+ Sbjct: 83 MLCSKWGADAILLGTVDPMAFNENLQQWTGSIPIFATVNQLVLNETQSKNLKGTVGVDWY 142 Query: 149 QMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGD 206 MG+Q G YL Q A NV+L+ GP ++GG+K + +GFR AI GS + I++ D Sbjct: 143 WMGHQAGHYLAQKHPAGSGTKNVVLLLGPKSSGGTKPVDKGFRDAIKGSDIHIMESFWAD 202 Query: 207 NDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR--NLKTPLTVVSFYLSHQVYRG 264 ND E+QRNL+Q+ ++ P++D + G+A+A EAA+ E R N + ++S YLSH +YRG Sbjct: 203 NDKELQRNLVQQAIDT-PDVDYLVGSAVAMEAAISELRSANKTGQIGLISTYLSHGIYRG 261 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 L R ++ A +DQMV QG L+V+QA+ L+ + + SP I LTP + I SLS Sbjct: 262 LLRNKIEFAPTDQMVLQGRLSVDQAVNYLRHKPYQIHSSPTIEPLTPNTLNFSTIEDSLS 321 Query: 325 PGGFRPVY 332 P +RP++ Sbjct: 322 PSEYRPIF 329 >UniRef50_C3M5M3 Periplasmic protein TorT n=33 Tax=Vibrio RepID=C3M5M3_VIBC3 Length = 349 Score = 243 bits (621), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 136/301 (45%), Positives = 191/301 (63%), Gaps = 14/301 (4%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGA 103 A KLCALYP LKDSYWLS+NYGM E AR+ ++L+V+EAGGY QQ QI C +WGA Sbjct: 45 AEKLCALYPHLKDSYWLSVNYGMVEEARKLNLNLRVMEAGGYPNHHKQQQQIALCVRWGA 104 Query: 104 EAILLGSSTTSF--PDLQKQVASLPVIELVNAI-----DAPQVKSRVGVPWFQMGYQPGR 156 +AILLG+ + DL S+PV VN + +K VGV W+ MG+ G Sbjct: 105 DAILLGTVSPELYQDDLAHYTRSVPVFATVNQLRLNEQQQEHLKGEVGVDWYWMGFYAGE 164 Query: 157 YLVQWAHGK---PLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQR 213 YL + H K + ++++PGP ++GG+K +++G AI S VRI +I DND E+QR Sbjct: 165 YLAR-KHPKGSGEIKIVVLPGPASSGGTKPVLQGLEEAIRHSDVRITEILWADNDKELQR 223 Query: 214 NLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTP--LTVVSFYLSHQVYRGLKRGRVI 271 NL+Q+ LE+ P++ + G+A+A EAA+ E R+L + +++ YLSH VYRGL RGRV Sbjct: 224 NLIQQALEQ-PDVRYLVGSAVAIEAAISELRSLNKSDQIGLIATYLSHGVYRGLLRGRVE 282 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPV 331 A +DQMV QG L+V QA L+ + + +P I LTPK+ +++ I SLSP +RPV Sbjct: 283 FAPTDQMVEQGRLSVRQAAAFLRNKPYATQQAPKIEALTPKHLEKKIIADSLSPSEYRPV 342 Query: 332 Y 332 + Sbjct: 343 F 343 >UniRef50_Q484F8 Periplasmic protein TorT n=2 Tax=Alteromonadales RepID=Q484F8_COLP3 Length = 356 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 135/345 (39%), Positives = 197/345 (57%), Gaps = 16/345 (4%) Query: 7 LLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRA----WKLCALYPSLKDSYWLSL 62 ++ LF L A N + ++ + + A + L + KLCA+YP LKDSYWLS+ Sbjct: 11 IVYCLFFLSTAVAANQDQLNNNRATSTIAVSELSTSKVSTGKIKLCAVYPHLKDSYWLSI 70 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQV 122 N+GM E A++ ++LKVL+AGGY Q QI+QC W A AIL+GS +F L +++ Sbjct: 71 NFGMTEQAKQRSIELKVLDAGGYQNKDEQLRQIEQCIHWQASAILVGS--VNFEALNQKL 128 Query: 123 ASL----PVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK----PLNVLLMPG 174 A + PV LVN I + R GV W+QMGYQ G YLV+ P + PG Sbjct: 129 AQVNKHTPVFALVNEIATNNISGRTGVSWYQMGYQLGEYLVKHHQNNFNTTPATLAWFPG 188 Query: 175 PDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 P GGS + +G +AA+ SP+ I+ I G N+ Q +LL++ L+++ ID +AG A+ Sbjct: 189 PKRGGGSLQSTKGLQAALVNSPIEIIAIEHGLNEKITQFSLLKDTLKKYNNIDYLAGNAV 248 Query: 235 AAEAAMGE-GRNLKTPL-TVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 AE A+ E GR K ++S YLSH VYRG+KR +++MA SDQMV QG++A+ QA+ Sbjct: 249 MAEMAINEVGRLPKEQQPEILSHYLSHGVYRGIKRHKILMANSDQMVLQGKMAINQAVDY 308 Query: 293 LQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHT 337 L+ V +P I+ + + SLSP F+P+Y + T Sbjct: 309 LKIGKVKTLQAPTIITIDQATIKKLKTELSLSPSNFKPIYSIKAT 353 >UniRef50_Q1GM88 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Proteobacteria RepID=Q1GM88_SILST Length = 356 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 121/328 (36%), Positives = 195/328 (59%), Gaps = 16/328 (4%) Query: 13 MLPAFSADNLLRWHDAQHFTVQASTPLKA-KRAWKLCALYPSLKDSYWLSLNYGMQEAAR 71 + PAFSAD + T + PL A ++ W +C +P +KD+YWL ++YG+ A Sbjct: 33 VTPAFSADGSV-----AEITYE---PLAAAEKPWNICVSFPHMKDAYWLGVDYGVVAEAE 84 Query: 72 RYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS-STTSFPDLQKQVA--SLPVI 128 R GV+L V+EAGGY++L TQ +QI+ C GA+A+++G+ S ++ +VA +PVI Sbjct: 85 RLGVNLNVVEAGGYTELNTQISQIEDCVASGADAVIVGAISYDGLNNVISEVAGKGIPVI 144 Query: 129 ELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVE 186 +++N + + ++ ++ V + MG++ G+YL + A P+ V PGP AG + Sbjct: 145 DVINGVSSTEIAAKSLVSFRTMGFETGKYLAEKHPAGADPVTVGWFPGPAGAGWVEAANT 204 Query: 187 GFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG--EGR 244 GF AA+ GS V++++ GD E Q L++++L+ +PEI +AGTA+ AEAA G R Sbjct: 205 GFMAAVEGSAVKVLEPRYGDTGKEAQLKLVEDVLQANPEISYIAGTAVTAEAAQGVIRER 264 Query: 245 NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSP 304 LK + +++FY++ VY G++RG + A +D MV QG +AV+QA+R L+G+ +V P Sbjct: 265 GLKGEVDILAFYMTPGVYSGIQRGFITGAPADSMVIQGRVAVDQAVRVLEGKDYLKHVGP 324 Query: 305 PILVLTPKNADREHIRRSLSPGGFRPVY 332 I V+ N L P GF PV+ Sbjct: 325 KIFVVDQDNVKDVARENILPPDGFSPVF 352 >UniRef50_B8IKX9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKX9_METNO Length = 356 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 173/301 (57%), Gaps = 11/301 (3%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 KA+R W++CA YP LKD+YW+S+NYGM A GV L V++AGGY + Q+ QI+ C Sbjct: 56 KAERQWRICASYPHLKDAYWISVNYGMVAQATAAGVRLTVVDAGGYPNVKRQREQIETCS 115 Query: 100 QWGAEAILLGSSTTSFPDLQKQV----ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPG 155 A+A+++G+ S+ L + V A +PVI VN ++ + ++VG+ W +MG G Sbjct: 116 H-NADALIVGA--VSYDGLSEVVRAIAARIPVIAAVNDMEDAGLAAKVGISWTEMGRIVG 172 Query: 156 RYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQR 213 YL G V PGP AG K + GFRA +AGS I + GD +IQ Sbjct: 173 AYLASRHPTGGAAAKVAWFPGPSAAGWVKFIDAGFRAGLAGSAATISIVKWGDTGFDIQS 232 Query: 214 NLLQEMLERHPEIDVVAGTAIAAEAAMG--EGRNLKTPLTVVSFYLSHQVYRGLKRGRVI 271 L++E LE P +D + G+A+ A+AA+ R T + + + Y +H YR +KRGR+I Sbjct: 233 RLVEETLESGPPVDYIVGSAVTADAAVSVLRERRPDTSIKIFADYFTHGTYRAIKRGRLI 292 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPV 331 A +D V QG LA++QAIR L+ + +V P IL++ N DR + SL+PG F P Sbjct: 293 AAPTDSPVLQGRLAIDQAIRALEQKLEHRHVGPSILLVYKSNVDRLDLDDSLAPGWFEPR 352 Query: 332 Y 332 + Sbjct: 353 F 353 >UniRef50_B6QZG8 TMAO reductase system periplasmic protein TorT n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QZG8_9RHOB Length = 368 Score = 206 bits (525), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 195/346 (56%), Gaps = 17/346 (4%) Query: 2 RVLLFLLLSLFMLPAFSAD--NLLRWHDAQHFTVQAST----PLK-AKRAWKLCALYPSL 54 ++L+ L+ +F+ A+ + + W FT + PLK A++AW +CALYP L Sbjct: 12 KILMAALVGVFLTGYAHAETWSAVTWEKLLDFTSPRKSISYEPLKQAEKAWSICALYPHL 71 Query: 55 KDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS 114 KDSYWLS+NYGM + A++ ++L+V EAGGY QL Q+ Q+ C +AILLG T S Sbjct: 72 KDSYWLSVNYGMVKQAKKLNINLRVYEAGGYYQLEQQRKQLQACADSKPDAILLG--TVS 129 Query: 115 FPD----LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW--AHGKPLN 168 F L++ V PVI LVN I + + + V W +MG + + + + A +N Sbjct: 130 FEGHHDLLEEIVKDTPVIALVNNIRSDFIAAATSVDWDEMGRRTAQVITKRHPAGTASVN 189 Query: 169 VLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDV 228 V PG G S + F++ + S +++ GD IQ +L++E LE D Sbjct: 190 VSWFPGAGKPGISSTKLSAFKSELTKSSANLLNTRYGDTGKLIQLSLIEEELEGGTAPDY 249 Query: 229 VAGTAIAAEAAMG--EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 + GT ++AEAA+G + R L + VVS YL+H V+RG+KRG++I + +DQ V QG +A+ Sbjct: 250 LIGTGVSAEAAIGALKVRGLSEDIEVVSGYLTHGVFRGIKRGKIIASPTDQPVMQGMMAI 309 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVY 332 +Q+IR L+G+ + +P IL++T + + +LSP F P Y Sbjct: 310 DQSIRLLEGKPYLKHYAPEILMVTKDSIAEIDLECALSPASFSPTY 355 >UniRef50_A3JZ93 Periplasmic sensory protein associated with the TorRS two-component regulatory system n=1 Tax=Sagittula stellata E-37 RepID=A3JZ93_9RHOB Length = 327 Score = 203 bits (517), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 116/325 (35%), Positives = 173/325 (53%), Gaps = 15/325 (4%) Query: 21 NLLRWHDAQHFTVQAS----TPL-KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGV 75 L W + +F Q + TPL KA++ WKLC ++P LKD YW++ NYG+ AR GV Sbjct: 2 TLTSWGEHFNFDSQTTALDYTPLSKAEKKWKLCVVFPHLKDPYWVATNYGVVSHARSLGV 61 Query: 76 DLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVA----SLPVIELV 131 + + EAGGY L Q+ + C +AILLG T S+ + + V S+PV V Sbjct: 62 AVDLFEAGGYDHLEEQKKLVKDCAAADYDAILLG--TVSYDQMTETVTEAAQSVPVFATV 119 Query: 132 NAIDAPQVKSRVGVPWFQMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVEGFR 189 NAI + V V W MG G+Y V G V +PGP+ AG GFR Sbjct: 120 NAIQGDGITGMVAVDWHDMGRAAGQYFVDNYPQGGDAPTVAWLPGPEAAGWVTFTDAGFR 179 Query: 190 AAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG--EGRNLK 247 + S I + GD + QR L++E L+ +P++D +AG A+A EAAMG R L Sbjct: 180 EVMQNSAAEISAVYYGDTGADFQRALVEEALDANPDLDYIAGNAVAIEAAMGVLRQRGLT 239 Query: 248 TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPIL 307 + +V+ Y + +YRG++RG + A +D QG L+V+QA+R L+G+ ++ P I Sbjct: 240 DQVGLVADYFTPAMYRGVRRGIISSAPTDSAALQGTLSVDQAVRHLEGKETPGHIGPVIF 299 Query: 308 VLTPKNADREHIRRSLSPGGFRPVY 332 +T +N+ + +SL+P F P + Sbjct: 300 SVTKENSSTFPVDQSLAPADFNPTF 324 >UniRef50_A3QGS0 TonB box domain protein n=16 Tax=Shewanella RepID=A3QGS0_SHELP Length = 387 Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 180/315 (57%), Gaps = 27/315 (8%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 AKR W+LCAL P LKD+YW+ ++YG+ A+ GV L++ EAG Y A Q Q++ C + Sbjct: 66 AKRPWRLCALVPHLKDAYWIGIDYGLVTRAQTLGVALELFEAGSYYGKAKQLEQLEHCMK 125 Query: 101 WGAEAILLGSSTTSFPDLQKQVA---SLPVIELVNAIDAPQVKSRVGVPWFQMGY----- 152 +AILLG T P+L KQ S P++ LVN +D+P V +R+GV W+QMG+ Sbjct: 126 SDFDAILLG---TVDPELLKQYQGQISKPMLALVNRLDSPLVSTRIGVNWYQMGWHAGDF 182 Query: 153 -------QPGRYLVQWAH------GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRI 199 QPG+ + A+ G+ + + L+ GP+ GGS + +G A+ GS V I Sbjct: 183 IHRTTAKQPGKANTEQANTDQTNTGQAVQLALLLGPEKLGGSTWVEQGIMEALEGSNVSI 242 Query: 200 VDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG--EGRNLKTPLTVVSFYL 257 DN+ ++ R+ L +L+ H D + G+A+A EAA+G ++ + +VS YL Sbjct: 243 SSNRHADNNRDLYRDQLHHLLKDH-RPDYILGSAVAIEAAIGALAQKDTAQDIALVSSYL 301 Query: 258 SHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 S RGL R RV ++ DQ+V QG+LA++ +R+L+G + ++ P I LTP N + Sbjct: 302 SPATLRGLYRHRVAFSSDDQVVLQGKLAIDVVVRELEGAAPFGDIGPRIKGLTPDNIQMK 361 Query: 318 HIRRSLSPGGFRPVY 332 + SL+P F P+Y Sbjct: 362 QLTDSLAPADFYPIY 376 >UniRef50_C4ZP40 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thauera sp. MZ1T RepID=C4ZP40_THASP Length = 357 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/303 (39%), Positives = 176/303 (58%), Gaps = 7/303 (2%) Query: 37 TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 P R W+LCA+YP LKDSYWL++N+GM E AR G+ L V EAGGY QLA Q+ ++ Sbjct: 48 VPPSPTRGWRLCAIYPHLKDSYWLAVNFGMTEEARALGLGLGVREAGGYGQLARQRERVA 107 Query: 97 QC-KQWGAEAILLGS-STTSFPD-LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 +C + +A+L+G+ S D L Q+ V+ +VN ID V++R+ VPW+Q+G+ Sbjct: 108 ECLEDEAVDALLIGTVSRGGLNDLLAPQLDHRLVLGVVNDIDPQVVRARIAVPWYQLGWT 167 Query: 154 PGRYLV--QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEI 211 GR+L A G P + +PGP +A + GFR IAGS V +V GD I Sbjct: 168 IGRWLAARHPAGGPPARIAWIPGPADADWVGFIDRGFRTGIAGSAVNVVAERHGDTGRAI 227 Query: 212 QRNLLQEMLERHPEIDVVAGTAIAAEAAMG--EGRNLKTPLTVVSFYLSHQVYRGLKRGR 269 QR L++ +L+ P++D + G A AEAA+ R + +VS YL+ V+ G+ RGR Sbjct: 228 QRRLVEAVLDEQPQLDYLVGNAPMAEAAIAALRRRGREGATAIVSSYLTPAVHGGILRGR 287 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFR 329 ++ A +D V QG LAV QA+R L+G+ + + P + ++ + R ++ L P GF Sbjct: 288 ILAAVTDFPVLQGRLAVRQALRALEGRPIEPYLGPAVELVDKSSLGRFPVQWMLPPAGFV 347 Query: 330 PVY 332 PVY Sbjct: 348 PVY 350 >UniRef50_A6FN89 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Rhodobacteraceae RepID=A6FN89_9RHOB Length = 359 Score = 189 bits (481), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 120/305 (39%), Positives = 172/305 (56%), Gaps = 7/305 (2%) Query: 37 TPL-KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI 95 TPL A++ W LC YP LKD+YWLS+N+GM E ARR GV K++EAGGY L Q+ QI Sbjct: 53 TPLDTAQQDWSLCVAYPHLKDAYWLSVNHGMVEEARRLGVSFKLVEAGGYPNLDRQRQQI 112 Query: 96 DQCKQWGAEAILLGS-STTSFPDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 C G +A++LG+ + + D Q+A +PVI VN I P + ++VGV W +MG Sbjct: 113 IDCVAEGVDALILGTVAYDALTDTILQIARDIPVIAAVNDIADPGITAKVGVSWVEMGAA 172 Query: 154 PGRYLVQ-WAHGKP-LNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEI 211 GR + Q G P + V PGP AG + + GF AAIA S I GD + Sbjct: 173 AGRVIAQRHPKGSPAVKVAWFPGPKGAGWVQFVERGFHAAIAASSAEIAVTKYGDTGRKD 232 Query: 212 QRNLLQEMLERHPEIDVVAGTAIAAEAAMG--EGRNLKTPLTVVSFYLSHQVYRGLKRGR 269 Q L+++ LE P++D V G+A AEAA+ R L+ + +VS Y++H VYRG+ R + Sbjct: 233 QVLLVEQALEEVPDLDYVVGSAPTAEAAVSLLRTRGLEGRVQIVSDYMTHAVYRGIYRQK 292 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFR 329 ++ A +D V QG LAVE A+R ++G + P I + + +L+P F Sbjct: 293 ILAAPTDFPVLQGRLAVEFAVRAIEGSLIHRQAGPVIFPVVEGQITEAQLSETLAPASFI 352 Query: 330 PVYFY 334 PV+ + Sbjct: 353 PVFEF 357 >UniRef50_A9D600 Periplasmic protein TorT n=1 Tax=Shewanella benthica KT99 RepID=A9D600_9GAMM Length = 435 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 114/354 (32%), Positives = 177/354 (50%), Gaps = 51/354 (14%) Query: 29 QHFTVQASTPLK-AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQ 87 Q +A PLK AK+AWK+CAL P LKD+YW+ ++YG+ + AR + L++ EAG Y + Sbjct: 77 QQAKTRAYYPLKRAKQAWKICALVPHLKDAYWIGIDYGLVQHARALNITLELFEAGSYYK 136 Query: 88 LATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPW 147 Q +Q+ C +AILLG+ Q + PVI LVN ID+ +V +R+GV W Sbjct: 137 KVKQLSQLSHCMDGDYDAILLGTVDPKLLASFHQPITKPVIALVNRIDSHKVTTRIGVNW 196 Query: 148 FQMGYQPGRYL---VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIAL 204 +QMG+ G ++ V+ + + +NV L+ GP+ GGS + EG AA+ + + Sbjct: 197 YQMGWFAGNFIKQDVEQGNAQQVNVALLTGPEKQGGSDWVEEGIVAALQPASKTSSSDSA 256 Query: 205 ----------------GDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGE------ 242 DN+ + R+ L +L+ D + G+A+A EAA+GE Sbjct: 257 KNSSKSSKITISSIRHADNNRNLYRDQLYHLLKDQTP-DYILGSAVAIEAAVGELAIKQA 315 Query: 243 -----------------------GRNLKTP-LTVVSFYLSHQVYRGLKRGRVIMAASDQM 278 G + P + +VS YLS V RGL R RV ++ D + Sbjct: 316 RHGSTLISRPEQEPQLSEVAQLRGNSQPAPQIKLVSSYLSPAVLRGLFRNRVAFSSDDSV 375 Query: 279 VWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVY 332 V QG+LA++ +R+L+G ++ PPI L + + SL+P F P+Y Sbjct: 376 VLQGKLAIDVVVRELEGAKPFGDIGPPIQGLQGDVLKKHKLENSLAPADFYPIY 429 >UniRef50_A9AX43 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX43_HERA2 Length = 379 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 104/299 (34%), Positives = 165/299 (55%), Gaps = 13/299 (4%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 A +A +C P +KDSYWL++NYG+ A R G++++++EAGGY L TQ QI QC Sbjct: 77 ADKAETICVSIPHIKDSYWLAVNYGVVSEAERLGINVEIVEAGGYGNLPTQITQIRQCVA 136 Query: 101 WGAEAILLGS-STTSFPDL--QKQVASLPVIELVNAIDAPQVKSR-VGVPWFQMGYQPGR 156 GA+A+++G+ S DL + Q +PVI +N I + + ++ + VP + G + + Sbjct: 137 NGAKAVVIGAISLDGLNDLIVELQSQKIPVIAFMNDISSKAITAKSLSVPG-EGGQEIAK 195 Query: 157 YLVQWAHGK---PLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQR 213 YLVQ H K ++V PGP+ AG SK E F+A I G + IV+ GD E Q Sbjct: 196 YLVQ-KHAKGSDAVDVAWFPGPEKAGWSKAADEKFKATITGGAINIVETKYGDTGKEEQA 254 Query: 214 NLLQEMLERHPEIDVVAG---TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRV 270 L++E+L HPEID + G TA+ A + E R L+ + ++++Y+S +VY L+ G + Sbjct: 255 KLIEEVLIAHPEIDYIVGTGQTAVTAAEILRE-RKLQDKIKIMAYYISPEVYAELQSGGI 313 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFR 329 AA V +A++Q +R L+G+ +V P V+ + S+ P F+ Sbjct: 314 QAAAVAPPVTIARIAIDQTVRILEGKEFMAHVGPKSFVIDTASLTSFDPTTSIPPETFK 372 >UniRef50_A1FB23 Tmao reductase system periplasmic protein tort (Fragment) n=1 Tax=Vibrio cholerae 2740-80 RepID=A1FB23_VIBCH Length = 232 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 138/226 (61%), Gaps = 12/226 (5%) Query: 117 DLQKQVASLPVIELVNAI-----DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK---PLN 168 DL S+PV VN + +K VGV W+ MG+ G YL + H K + Sbjct: 3 DLAHYTRSVPVFATVNQLRLNEQQQEHLKGEVGVDWYWMGFYAGEYLAR-KHPKGSGEIK 61 Query: 169 VLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDV 228 ++++PGP ++GG+K +++G AI S VRI +I DND E+QRNL+Q+ LE+ P++ Sbjct: 62 IVVLPGPASSGGTKPVLQGLEEAIRHSDVRITEILWADNDKELQRNLIQQALEQ-PDVRY 120 Query: 229 VAGTAIAAEAAMGEGRNLKTP--LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 + G+A+A EAA+ E R+L + +++ YLSH VYRGL RGRV A +DQMV QG L+V Sbjct: 121 LVGSAVAIEAAISELRSLNKSDQIGLIATYLSHGVYRGLLRGRVEFAPTDQMVEQGRLSV 180 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVY 332 QA L+ + + +P I LTPK+ +++ I SLSP +RPV+ Sbjct: 181 RQAAAFLRNKPYATQQAPKIEALTPKHLEKKIIADSLSPSEYRPVF 226 >UniRef50_B9L4R0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L4R0_THERP Length = 427 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 165/307 (53%), Gaps = 16/307 (5%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQ-C 98 KA + + + +P LKD YWL+++YG+ + A+ GV ++++ A GY+ L Q Q++ Sbjct: 117 KANKPYMIGVSFPHLKDPYWLAVDYGIVDEAQILGVGIELVAAQGYNDLTGQINQVENLA 176 Query: 99 KQWGAEAILLGSSTTSFPDLQKQVASL------PVIELVNAIDAPQVKSRVGVPWFQMGY 152 + E I+L + S+ + V + PVIE++N I AP + ++ V ++ MGY Sbjct: 177 NRADIEGIIL--AAISYASQDQLVTDIVKNKKKPVIEVINDIQAPDIMAKALVSFYDMGY 234 Query: 153 QPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI---AGSPVRIVDIALGDNDI 209 G+++ + + G+ + V+ +PGP +G + + V+GF+AA+ V+I+D+ GD Sbjct: 235 AAGQFVAEDSGGQEVTVVFLPGPAGSGWAPDTVDGFKAAVEEKVPGKVKILDVKWGDTGK 294 Query: 210 EIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGR 269 ++Q +L+++ L +P++ + G A+AA+AA N VVS Y+ +Y + G+ Sbjct: 295 DVQVSLIEDALNAYPDVTYLVGNAVAADAAPDILANRAKKPKVVSTYIIPPLYDKIAEGK 354 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDN----VSPPILVLTPKNADREHIRRSLSP 325 V A +D QG +AV+ +R L G+ + P I V+TPKN P Sbjct: 355 VAAAPTDFTALQGRMAVDMMVRILNGEKPGVDFPFRAGPIIKVVTPKNYKEFKYEDMFGP 414 Query: 326 GGFRPVY 332 FRPV+ Sbjct: 415 RDFRPVF 421 >UniRef50_Q162F2 Periplasmic protein TorT n=3 Tax=Rhodobacteraceae RepID=Q162F2_ROSDO Length = 336 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 159/309 (51%), Gaps = 13/309 (4%) Query: 31 FTVQASTPLKAKRAWKL-CALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLA 89 +V A P A +A K+ CAL P KD YWLS+ +G+++ A+R D+ EAGGY A Sbjct: 29 LSVTALPPSAAAQAHKVFCALVPHFKDEYWLSVGFGLEQEAQRNNTDILFFEAGGYGDPA 88 Query: 90 TQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVA----SLPVIELVNAIDAPQVKSRVGV 145 Q Q++ C G +AIL+G+ + L + + +PV LVNA+ + + RVGV Sbjct: 89 VQIDQLETCVTRGVDAILIGAVASDHNGLTEAIERAARDVPVFGLVNAVHSDALAGRVGV 148 Query: 146 PWFQMGYQPGRYLVQW-AHGKPL-NVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIA 203 W MGY G++L G P +L+ GP +G + + G R +A S V I+D+ Sbjct: 149 DWRDMGYLLGQHLSTLHPAGSPAQTAVLVTGPAGSGWTGPLEAGLREGLARSSVTILDVL 208 Query: 204 LGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG--EGRNLKTPLTVVSFYLSHQV 261 D + Q L ++ LERHP + + G+A A EAA+G R + +V+ Y++H V Sbjct: 209 GADTGLRHQLALSEQALERHPGANYLIGSAPAIEAALGLLATRPHRDKPVLVATYVNHTV 268 Query: 262 YRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 RGL V+ A+ D + Q +A++ A + + P ++VLT N+D Sbjct: 269 KRGLMNASVLAASFDDPMVQARMAIKMAAS--APARSAQTLGPKVVVLT--NSDDNLTEV 324 Query: 322 SLSPGGFRP 330 +SP + P Sbjct: 325 RMSPADYFP 333 >UniRef50_A1S2M5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Shewanella RepID=A1S2M5_SHEAM Length = 361 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/326 (30%), Positives = 166/326 (50%), Gaps = 9/326 (2%) Query: 4 LLFLLLSLFMLPAFSADNLLRWH-DAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 ++ LL++ L AF+ L H D QA P KA R W++CAL P KD YW + Sbjct: 10 IVTLLIAFIALTAFAEGPGLEMHIDGNAGIYQA--PEKATRPWRICALLPHGKDHYWWGV 67 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQV 122 +G+ + A+R G+++ + +AGGY +LA Q+ Q+ QC + A ++ + T + ++ Sbjct: 68 AWGLSQEAQRLGIEIGIYDAGGYDKLAEQKRQLKQCHRLKANGYIIAAITADGLSAEVEL 127 Query: 123 ---ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAG 179 +PVI+LVN +++ +V SR V + M +Y++ +PLNV PGPD A Sbjct: 128 LMADGIPVIDLVNGMNS-EVSSRSLVSFVDMATAAAKYMLATEPNRPLNVAWFPGPDGAA 186 Query: 180 GSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAA 239 K+ G AI G +R+V G + +Q +L++ ++ R ++A A AA Sbjct: 187 WVKDAETGLAEAIVGEDIRLVHGGYGMTETFVQADLVRGLVSRIQAEYIIANAVAATVAA 246 Query: 240 MGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVS 299 G KT V++FY + Q ++ G + +D V Q ++V+ A++ L+ S Sbjct: 247 KYFGNRGKT--KVIAFYSNPQTIELVRDGTLQATVTDSPVLQARVSVDLAVQWLEQGSAP 304 Query: 300 DNVSPPILVLTPKNADREHIRRSLSP 325 VSP I VLT +N + +L P Sbjct: 305 RLVSPVIQVLTSENLAAADLSLTLPP 330 >UniRef50_A6M1W5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M1W5_CLOB8 Length = 425 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 148/270 (54%), Gaps = 12/270 (4%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI-DQ 97 +K K+ + + L P +D YW+S NYG+ A+ GV +K+ GGY + Q+ ++ D Sbjct: 111 IKPKKEYTIGVLLPHFEDQYWVSANYGIINYAKELGVKVKLYAVGGYIEFGNQKEELMDL 170 Query: 98 CKQWGAEAILLGS-STTSF-PDLQKQVAS-LPVIELVNAIDAPQVKSRVGVPWFQMGYQP 154 + + I+ + T F D++ V + P++ LVN I++P + ++ V ++ MGY+ Sbjct: 171 AEDDKIDGIVFATLDNTKFNSDVENIVHNDKPIVALVNDINSPDISAKAIVSYYDMGYKA 230 Query: 155 GRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIA--GSPVRIVDIA---LGDNDI 209 G Y+V+ + GK + + PGP +G + + + GF+ A++ + + +DI+ GD Sbjct: 231 GEYVVEDSAGKDIKIAFFPGPKESGWASDTLNGFKDAVSRLKTNDQKIDISNPFYGDTRP 290 Query: 210 EIQRNLLQEMLERHPEIDVVAGTA---IAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLK 266 ++QR + +LE + + D + G A I AE + + + + +VS Y++ V+ +K Sbjct: 291 DVQRLHITSVLENNDDYDYLVGCAPAVIEAEKFISKRKEKFKNIRIVSTYMTSDVFNLIK 350 Query: 267 RGRVIMAASDQMVWQGELAVEQAIRQLQGQ 296 +G V+ + SDQ + Q +A++ +R L G+ Sbjct: 351 KGAVLASPSDQTIQQCRIALDMIVRILNGE 380 >UniRef50_C5V4K8 Periplasmic binding protein/LacI transcriptional regulator (Fragment) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4K8_9PROT Length = 381 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 95/336 (28%), Positives = 161/336 (47%), Gaps = 21/336 (6%) Query: 18 SADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDL 77 SAD+ L T + P A R W++ L+P +KD YW+ YG+ A+R GV + Sbjct: 51 SADDALSTGRVVDSTYVMAEP--ASRPWRIAFLFPHVKDPYWVDCTYGLISEAKRLGVAI 108 Query: 78 KVLEAGGYSQLATQQAQIDQCKQWGAEAILLG--SSTTSFPDLQK-QVASLPVIELVNAI 134 + A GY L Q ++D+ +AI++ S T + P + K + +PV +L N Sbjct: 109 DIFPADGYDDLIGQLRKMDEVIAEKYDAIVISPISQTANNPSIAKARSRGIPVFQLANDS 168 Query: 135 DAPQVKSRVGVPWFQMGYQPGRYLVQWAHG---KPLNVLLMPGPDNAGGSKEMVEGFRAA 191 + + ++ MG ++++ A K +NV L+PGP +AG V G RAA Sbjct: 169 TSDDLTIKITSSLKGMGVDTMGWVIRDAQRRGLKAINVALLPGPADAGWVMGEVAGARAA 228 Query: 192 IAGSPVR--IVDIALGDNDIEIQRNLLQEMLERH-PEIDVVAGTAIAAEAAM--GEGRNL 246 SP++ I DI GD+D+ Q L +++L H ++D + G A AA+ L Sbjct: 229 AKKSPIKVNIADIRYGDSDLVGQSQLAEQLLAAHGSKLDYILGCTACAPAAILPVHDAGL 288 Query: 247 KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPI 306 K + +V+F L+ ++ ++RG + A + V Q +A+ + L+G+ S P Sbjct: 289 KEKIRIVAFGLTREMIGHIRRGEIYAATDVKGVSQARVAINATVNYLEGRIES---RPHT 345 Query: 307 LVLTPKNADREHIRR-----SLSPGGFRPVYFYQHT 337 +++ DR++ + S SP +R V Y T Sbjct: 346 MLIKLGMVDRDNYAQYNYDVSTSPPAYRTVLSYDPT 381 >UniRef50_A4F0B1 Periplasmic sensory protein associated with the TorRS two-component regulatory system n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4F0B1_9RHOB Length = 272 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 81/265 (30%), Positives = 127/265 (47%), Gaps = 12/265 (4%) Query: 68 EAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDL----QKQVA 123 E A+ ++ + +GGY Q + +C+ A AILLG+ + + P L Q Sbjct: 2 EQAKLSQAEVILFASGGYYGPEKQIELLMRCRARQATAILLGAVSANDPALLDAVQATAT 61 Query: 124 SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGS 181 +PV+ LVN +++P + VGV W QMG G +L Q A G P+ L+ GP +G S Sbjct: 62 QVPVVALVNELNSPFLSGAVGVDWRQMGNVIGHFLRQKFPAEGPPVKAALITGPAKSGWS 121 Query: 182 KEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG 241 + G + + S +I + D + Q ++ L+ I ++ G+A A E AMG Sbjct: 122 PLLEIGLQQGLDDSAAKITFVGRSDTGLRQQLAAVEAALKVDKGIQILIGSAPAIEGAMG 181 Query: 242 EGRNLKTPL-TVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD 300 N +VS Y+SH V RG++ G V A D V QG+L ++ A+ G+ Sbjct: 182 LAANSDGVFPELVSTYISHSVRRGVQSGTVTAVAFDDPVEQGKLGIKLALASRLGEFSPI 241 Query: 301 NVSPPILVLTPKNADREHIRRSLSP 325 V P I ++ +RE R +L P Sbjct: 242 LVGPEIQLI-----ERETDRANLIP 261 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 73/312 (23%), Positives = 147/312 (47%), Gaps = 13/312 (4%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQA-STPLKAKRAWKLCALYPSLKDSYWL 60 R+L LLL++FM+ S + +++ V+ ++ K K+ +L + +++ Sbjct: 6 RLLSVLLLAIFMITGCSIEGQNNKEESKESGVEEKASETKTDGDMKIGVSLSTLNNPFFV 65 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG--SSTTSFPDL 118 S+ G++EAA + V+ + +A S +TQ Q++ G + I++ ST + Sbjct: 66 SIREGVEEAAGKENVETVITDAQNDS--STQNNQVEDLITQGVDLIVINPVDSTAIATSV 123 Query: 119 QK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 +K A++PVI + D ++ S + + G G Y+++ G+ V+ + G Sbjct: 124 EKANEANIPVICVDRGSDQGELVSFIASNNVEGGKLAGEYILEKV-GENAEVIQLEGIPG 182 Query: 178 AGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 A ++E EGF A G + ++ + D +++ +L+ HP DV A E Sbjct: 183 ASSTRERGEGFEEATNG-KINLLASQTANFDRAEGMTVMENLLQAHP--DVKAVFCQNDE 239 Query: 238 AAMGEGRNLKTP---LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 A+G +K +T+V F + + ++ G + + + G+LA+E AI+ L+ Sbjct: 240 MALGASEAIKASGKDVTIVGFDGNEDAIKAVEEGNLSATVAQKPKEMGKLAIETAIKYLK 299 Query: 295 GQSVSDNVSPPI 306 G+ V + V P+ Sbjct: 300 GEEVEETVDSPL 311 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/300 (22%), Positives = 139/300 (46%), Gaps = 43/300 (14%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 K+ + +L+ +++ ++ G++E A+ GV KV+ +A Q + I+ Q Sbjct: 39 KKDLTIGVSTITLQHQFFIDIDEGIKEKAKELGV--KVIVNDPDQDVAKQTSAIEDFIQQ 96 Query: 102 GAEA-ILLGSSTTSF-PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 + I+LG+ ++ P ++ +PV+ + ++ + S VG + G + G Y Sbjct: 97 NVDGMIVLGTDNSAIVPAVEGAFEKMPVVTVDAVLNTENITSYVGTVSYDAGKKLGEYTK 156 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEM--------------VEGFRAAIAGSP-VRIVDIAL 204 ++ K GG E+ ++GF+ A+ GS V+I++ Sbjct: 157 KYIDEK------------LGGKSEIAIVTDLKSQIQMQRIDGFKDALKGSANVKILNSQP 204 Query: 205 GDNDIEIQRNLLQEMLERHPEIDVVAGTA----IAAEAAMGEGRNLKTPLTVVSFYLSHQ 260 G D E N ++ +++ +P++D++ TA + A+AA+ +N + +V F L+ + Sbjct: 205 G-YDREESLNTVENLIQSNPDVDIIYATAENSVLGAKAALESAKN--KDVKIVGFDLTEE 261 Query: 261 VYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 G+ G ++ Q G LAVE ++ ++G+ V N+ P L+ D+E+I+ Sbjct: 262 ASSGITDGTILAMIQQQPKEMGRLAVEAVVKAIKGEKVEKNIPVPALLY-----DKENIK 316 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 136/290 (46%), Gaps = 25/290 (8%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQ 97 P RA L + K+ ++L + YG Q A G+DL VL+AG +++ Q AQ+D Sbjct: 27 PAAGSRAVTLA--LSTEKNPFFLQVRYGAQAKANELGIDLTVLDAGDDAEV--QAAQLDD 82 Query: 98 CKQWGAEAILLGSSTTSFPDL-QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 G + S P + Q +P I + I V + + + G Sbjct: 83 VSS-GVAVVNPADSEALAPAVSQLNEKGIPAITVDRTITGADVAALIDSNNTEGGAAAAS 141 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 L + + V+++ G + + S E EGF A+A P VRIV D D + R+L Sbjct: 142 VLAKAIRAQG-EVIVLRGIEGSSSSAERYEGFTQAMAEHPRVRIVAAEAADFDRDTARDL 200 Query: 216 LQEMLERHPEIDVVAGT-------AIAAEAAMGE--GRNLKTPLTVVSFYLSHQVYRGLK 266 + ++L HP+ VAG A+ A A+GE G+++K VV F + + R +K Sbjct: 201 VTDLLADHPD---VAGIFAENDEMALGAVDALGERAGKDVK----VVGFDGTEEGVRAVK 253 Query: 267 RGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 +++ + Q G A+EQA + L G++ +++V P++V+T N ++ Sbjct: 254 NRKLVATIAQQSSELGATAIEQAGKLLDGEA-AESVHTPVMVVTRDNIEK 302 >UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Ruminococcus RepID=C6JCU3_9FIRM Length = 325 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 70/298 (23%), Positives = 128/298 (42%), Gaps = 26/298 (8%) Query: 46 KLCALY--PSLKDS---YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 K C+L P ++D+ +W S+ G + AA Y DL++L + Q + + + Sbjct: 34 KKCSLIYIPKIRDNTNDFWTSVISGCKMAAEEYESDLEILAPDKEENIEEQNKLLKKAIE 93 Query: 101 WGAEAILLG-SSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 +AIL SS S +L K+ + + ID+ + + GR L Sbjct: 94 QKPDAILFSPSSMDSSDELLKEAKEKGI--RITYIDSYTKEKLQDLTVATDNVNAGRMLG 151 Query: 160 QWAH---GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLL 216 ++A K + ++ + E +GFR + IVDI ++ E L Sbjct: 152 EYARKLIDKDSKIAIVSHVKGVSTAVEREQGFREGLGDYADNIVDIVYCNSLYEKSYELA 211 Query: 217 QEMLERHPEIDVVAGTAIAAEAAMGEGRNL-----KTPLTVVSFYLSHQVYR----GLKR 267 QE++ ++P+++++AG + +A+G GR + K + VV S + G+ + Sbjct: 212 QELMRKYPDLELIAG--MNEYSAVGVGRAVSDAGAKDKIAVVGVDCSQEAINLMEMGVYK 269 Query: 268 GRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 G ++ A G + VE+ I L G +V N+ ++TP+N I R + P Sbjct: 270 GIIVQKA----FRMGYIGVEETIHMLNGDAVEKNIDSGCELVTPENMYNSDIERLIFP 323 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 71/287 (24%), Positives = 129/287 (44%), Gaps = 14/287 (4%) Query: 35 ASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQ 94 ++T + + KL +L + ++++++ G+QE A++ GV + +L G + ATQ Q Sbjct: 35 SNTGTASTKPIKLGFAVSTLNNPFFVAMSNGVQEEAKKLGVQVTILN--GNNDPATQLNQ 92 Query: 95 IDQCKQWGAEAILLG---SSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMG 151 ++ Q AI+L S + S Q A +PVI L ++ V + + G Sbjct: 93 VEDLIQQHVNAIILNPTDSQSLSTAVEQANRAHIPVITLDRSVTKGNVACFIASNSVEAG 152 Query: 152 YQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIE 210 L++ GK V+ + G + +GF I +P +R+V + D Sbjct: 153 KMAADELIKALGGKG-QVVELQGVIGTSAEADREKGFDEEIGKAPGIRVVARQTANFDRS 211 Query: 211 IQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL----KTPLTVVSFYLSHQVYRGLK 266 N++Q +L+ HP I V A E A+G + + K + +V + + Sbjct: 212 QALNVMQNILQAHPNIQGV--FAQNDEMALGALKAIQEAGKHNIKIVGIDGEKEAVNDVH 269 Query: 267 RGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 +G + + Q V +G L VE A++ ++G+ V V+ P L L KN Sbjct: 270 KGLLYADIAQQPVQEGILGVEYAVKLVEGEKVPKQVNSP-LHLVEKN 315 >UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0I6_RUMGN Length = 337 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 17/294 (5%) Query: 42 KRAWKLCALYPSLKDS--YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 KR +K+ + ++ +S +W L G + A +G +++V+ + Q I++ Sbjct: 42 KRTYKIIMVPKTIDESNDFWTGLIEGAKLGAEEFGCEIEVVGSDSEDDYEGQNRLIEESI 101 Query: 100 QWGAEAILLG--SSTTSFPDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 + +A L+ S T + +Q+ + A + VI + + ID V F+ G + G Sbjct: 102 KKNPDAFLIAPCSYTHTTEAVQEAINAGIKVILVDSVIDKEIANGVVATDNFKAGKELGT 161 Query: 157 Y--LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRN 214 + + K V + G A E +G R + RI DI ++ ++ + Sbjct: 162 FAKTILKPDSKIGVVAHVKGSSTA---TEREDGIREGLGEDQNRIQDIVYCNSSYDLASD 218 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGR 269 L ++ML+ PEIDVV GT +A+G R +K + VV F S + + L+ G Sbjct: 219 LTEKMLKERPEIDVVIGT--NEYSAVGAARGVKKMGMEDQVKVVGFDNSVEQIQLLEAGV 276 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSL 323 + G L VEQA++ ++G + N+ ++T +N E +R L Sbjct: 277 FQGIVIQKPFNIGYLGVEQAVKAIEGYPMEYNLDSGCKLITKENMYEEENQRLL 330 >UniRef50_C6CXU6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXU6_PAESJ Length = 330 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 117/268 (43%), Gaps = 16/268 (5%) Query: 1 MRVLLFLLLSLFML-PAFSADNLLRWHDAQHFTVQAST-PLKAKRAWKLCALYPSLKDSY 58 +R FL + LF+L AFS+ + H++ S+ + K L + + Y Sbjct: 2 LRTNKFLYIILFVLFIAFSSCAVYYAGKGMHYSNNISSGNVIDKPQLHLVLISQEYDNPY 61 Query: 59 WLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL-GSSTTSFPD 117 W + G +EAA++ G++L+ L + + ++ + I+ G F Sbjct: 62 WRLVQQGAREAAQQKGIELEYL-GPARADVKEHIKILEMAIASKVDGIITQGLEENEFTP 120 Query: 118 LQKQVASLPVIELVNAIDAPQVK--SRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 + + A + + + DAP K + VG + GY GR L+ + G+ V L+ G Sbjct: 121 IINEAARMGIPIITVDSDAPHSKRVAYVGTDNYAAGYMAGRELIAKSAGRA-EVALITGS 179 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEML-ERHPEIDVVAGTA 233 A K+ V GF+ A+ P + I+DIA N IQ L +++PEID GT+ Sbjct: 180 FTASNQKDRVRGFKDAVKTYPGIHIIDIA-ESNISRIQSAASAYTLAQKYPEIDTFVGTS 238 Query: 234 ------IAAEAAMGEGRNLKTPLTVVSF 255 IA LKTP+ +++F Sbjct: 239 ALDGLGIAQMLKEMGSETLKTPIRIIAF 266 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/281 (20%), Positives = 128/281 (45%), Gaps = 18/281 (6%) Query: 53 SLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS-- 110 SL +++++ + G+++ G K++E +A Q + I+ + +++ + Sbjct: 50 SLSNAFFIGMEKGVKDKTSEIGC--KLIETNANGDIAKQLSDIEDLITKKVDILIVNALD 107 Query: 111 STTSFPDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLN- 168 + P ++K + A++P+I L ++ + + + +MG Q +++ K LN Sbjct: 108 ADAIVPAVKKAKEANIPIIFLDRGANSEDMTTFLETDNVKMGEQAAELILKALKDKGLNG 167 Query: 169 --VLLMPGPDNAGGSKEMVEGFRAAIAG-SPVRIVDIALGDNDIEIQRNLLQEMLERHPE 225 V+ + G +++ +GF + V+IV GD + E N++Q +L+ +P+ Sbjct: 168 GNVVEIEGLQGTSAARDRGKGFHNVMDKHKEVKIVAKQAGDFNQEKSMNVMQNILQANPK 227 Query: 226 IDVVAG----TAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASD 276 ID V G + AE A+ +K + VV +Q +K+G + ++ S Sbjct: 228 IDAVFGHNDDCTVGAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIESVKKGNIDVSISQ 287 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 + G AVE ++ ++G+ V ++ +T NA E Sbjct: 288 DPIGMGVQAVEVGLKAIKGEQVEKHIYTKFFPITKDNATDE 328 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 77/336 (22%), Positives = 142/336 (42%), Gaps = 24/336 (7%) Query: 1 MRVLLFLLLSLFMLPA------FSADNLLRWHDAQHFTVQAST-PLKAK----RAWKLCA 49 M+ +L LLS +L + A N + QAS P +A + + Sbjct: 1 MKKMLACLLSFTILASTLTGCTVGASNATAAENQAPAETQASNEPAQAADPSVKTYNFVF 60 Query: 50 LYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL 108 + S++ S+ LS+ G + AA +++K + + Q ++Q GA+AIL+ Sbjct: 61 IVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQLVEQAITDGADAILI 120 Query: 109 --GSSTTSFPDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK 165 ST P ++K A +P+ V + +GV + +GY+ G L + G Sbjct: 121 TPADSTGIVPAIEKANAAGIPIATPNTKAYGGDVLTWIGVDNYTVGYELGTALCEALEGT 180 Query: 166 PLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHP 224 V+L+ G S E V+G+ A P + ++D D + E +++ L+R+P Sbjct: 181 G-KVVLIEGTAGNSTSTERVDGYLDAFKNYPGIELLDSQPADFNREKGMTVMENFLQRYP 239 Query: 225 EIDVVAG-----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMV 279 EID V T A EA GR+ + + V+F + + + G +++ + + Sbjct: 240 EIDGVGSINKDMTMGAIEACKAVGRDKE--MVQVTFDVDNDCLDAIDAGDILITGAQEEK 297 Query: 280 WQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 Q A+ + G V+ P+ ++T N + Sbjct: 298 SQIANAIYACLLACNGYKVAPEQYIPMTLVTKDNTN 333 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 74/289 (25%), Positives = 133/289 (46%), Gaps = 21/289 (7%) Query: 52 PSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS 111 P ++++ GM++AA G +L VL A G S Q Q +Q GA + + Sbjct: 35 PEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNSSQQVNQVQNLVTQQVGAVIFAMQDA 94 Query: 112 TTSFPDL-QKQVASLPVIELVNAIDA-PQ--VKSRVGVPWFQMGYQPGRYLVQWAHGKPL 167 T + + + A++PVI AID PQ V + +G + + YL + GK Sbjct: 95 TAGAAGVAEAKGANIPVI----AIDQRPQGDVTTFIGSDSVKASTELCDYLAKQMGGKG- 149 Query: 168 NVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEI 226 N+ ++ G + E +G + + +P +++V D D N+ Q++L +PE+ Sbjct: 150 NLAIIKGVLGSSTEIERSKGCGSILEKNPDIKVVSTTNADWDENKAYNVAQDVLTANPEL 209 Query: 227 DVV--AGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGEL 284 + +A AA + ++ L +VS QVY ++ G+V+ S + GEL Sbjct: 210 QAIFAQNDGMALGAAKAAAQAGRSNLKIVSVDGFPQVYDAIESGQVLATMSQEPYQMGEL 269 Query: 285 AVEQAIRQLQGQSVS---DNVSPPILVLTPKNADREHIRRSLSPGGFRP 330 AV AI+ + G++ S + + P +LV +E++ + S G + P Sbjct: 270 AVRTAIKAMSGEAGSIQKEQLQPTVLVT------KENLEEARSAGYYGP 312 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/282 (21%), Positives = 128/282 (45%), Gaps = 11/282 (3%) Query: 35 ASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQ 94 ++ L A+ + + +L + +++++ G + A+ G +L VL++ + + + + Sbjct: 15 STVSLGAQAQDTMAIVVSTLNNPFFVTMKDGAETRAKELGYNLIVLDS--QNDPSKELSN 72 Query: 95 IDQCKQWGAEAILLGSSTTSFPDLQKQVAS---LPVIELVNAIDAPQVKSRVGVPWFQMG 151 ++ G +AIL+ + + ++A+ +PV+ L V S + G Sbjct: 73 VEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGDVVSHIASDNVVGG 132 Query: 152 YQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEI 211 G ++V+ G+ V+ + G ++E EGF A+ GS + ++ D D Sbjct: 133 EMAGNFIVEKV-GEKAKVIQLEGIAGTSAARERGEGFMNAVKGSHMELLASQPADFDRTK 191 Query: 212 QRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTP---LTVVSFYLSHQVYRGLKRG 268 N+++ +L +P DV A A E A+G R ++ + +V F + + RG Sbjct: 192 GLNVMENLLAANP--DVQAVFAQNDEMALGALRAIQASGKEVMIVGFDGTDDGIAAVNRG 249 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLT 310 ++ + Q G L +E A + L+G+ V D + P+ V+T Sbjct: 250 KLAATIAQQPDLIGALGIETADKVLKGEQVEDYIPVPLKVVT 291 >UniRef50_A9L4Q6 Putative uncharacterized protein n=1 Tax=Shewanella baltica OS195 RepID=A9L4Q6_SHEB9 Length = 109 Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 9/92 (9%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFT---VQASTPL-KAKRAWKLCALYPSLKD 56 +R+ L L LS F+ +A W+ A TPL KA +AW++CAL P KD Sbjct: 23 LRICLLLTLSSFVFAVQAA-----WYPADVIADGQKTLYTPLTKANKAWRICALLPHGKD 77 Query: 57 SYWLSLNYGMQEAARRYGVDLKVLEAGGYSQL 88 YW + +G+ + A R GV L + +AGGY ++ Sbjct: 78 QYWWGVAFGLSQEAERQGVTLGIYDAGGYDKI 109 >UniRef50_B7DPH3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DPH3_9BACL Length = 329 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 69/267 (25%), Positives = 119/267 (44%), Gaps = 11/267 (4%) Query: 56 DSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS--TT 113 D +++S+ YG Q+ A++ GV L A YS A Q ++ A+++ + T Sbjct: 53 DPFFISMAYGAQQEAKKLGVKLIYEGASTYSPSA-QTPYVNAMVSRHVNALIVCPTDLTA 111 Query: 114 SFPDLQKQV-ASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLL 171 P +++ V A + V+ + I DA + SR+ Q G +L AHG+ + +L Sbjct: 112 MIPPIKQAVNAGIKVLTADSTISDASLLTSRITSDNEQGGAAAADFLGSMAHGQGVVGVL 171 Query: 172 MPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG 231 P P K V+GF A + +I + DN+ Q L + L H +V Sbjct: 172 DPSP-GISTDKARVDGFIAEMKKKYPKIKVVIEYDNEQTTQAEQLAQDLMLHYGKSLVGI 230 Query: 232 TAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 +A G + ++ T + +V + + LK G + + + + +GELAV Sbjct: 231 FGTDDTSASGAAQGVRSSGSATHVNIVGYDAEPAEVQDLKEGMISALIAQKPMIEGELAV 290 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPKN 313 E A+ L+ +SV V P +V+T N Sbjct: 291 EYAVEALEHKSVPKFVQLPNVVITKAN 317 >UniRef50_A9KK42 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KK42_CLOPH Length = 320 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 73/315 (23%), Positives = 135/315 (42%), Gaps = 48/315 (15%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 ++++++LL + ++ S N K + + + S K ++W S Sbjct: 6 KIVVWILLGVMLITLVSCSN------------------KDNKKHYVAMITKSTKSAFWQS 47 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL-----GSSTTSFP 116 + G AA Y + + Q I Q + GAEA++ ++ + Sbjct: 48 VFAGASAAATEYNLSISYAGPELEEDYEYQNDLIYQAIEDGAEAVIFSAVDYNANAKAIE 107 Query: 117 DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 D K+ L VI + + +++ QV R+G + G G + + K +++ ++ Sbjct: 108 DAAKK--GLKVIIIDSDVNSNQVTCRIGTDNYAAGCMAGEAALASSEEK-IHIGIVNYDI 164 Query: 177 NAGGSKEMVEGFRAAIAGSPVRIVDIALGD--NDIEIQRNLLQEMLERHPEIDVVAGTAI 234 N+ ++ +GFR I R++DI + + E R +++LE HPEI+V+A Sbjct: 165 NSANGQQREDGFRE-IVSKDSRVIDIVTINVVSTTEDARKGTKQLLEEHPEINVIA--TF 221 Query: 235 AAEAAMGEG-----RNLKTPLTVVSFYLSHQVYRG-LKRGRVIMAASDQMVWQ-----GE 283 ++G G NL TVV+F S+ V G L+ G V D ++ Q G Sbjct: 222 NEWTSLGVGWAIRDLNLADETTVVAFD-SNVVSVGMLETGEV-----DALIVQNPYAMGY 275 Query: 284 LAVEQAIRQLQGQSV 298 L VE+ ++GQS+ Sbjct: 276 LGVEKVAELIRGQSI 290 >UniRef50_A6M1U2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M1U2_CLOB8 Length = 315 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 91/178 (51%), Gaps = 14/178 (7%) Query: 60 LSLNYGMQEAARRYGVDLKVL--EAGGYSQLATQQAQIDQCKQWGAEAIL--LGSSTTSF 115 +S+N +QE +++ ++K++ +AGG + Q+ I+ +GA+ ++ + +S Sbjct: 53 ISMNKEIQEEVKKHS-NIKIIFKDAGG--DVEKQREDIEDLMNFGADLLIVSINNSKELT 109 Query: 116 PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 P ++K SLPVI L A+D +G +G Q G + A NV+ + G Sbjct: 110 PTVRKAYESLPVILLDRAVDGYDYTLYIGADTRSIGVQAGELIANLAGNNKANVIEVQGI 169 Query: 176 DNAGGSKEMVEGFRAAIAGSPVRIVD-IALGD---NDIEIQRNLLQEMLERHPEIDVV 229 ++ KE+ +GF+ AI+ +D +G+ N+ E + L+E+L+ +++++ Sbjct: 170 LDSSTDKEITDGFKEAISNYKNIAIDRTIVGNWQKNETE---DKLEEILKDDKDVNII 224 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 99/213 (46%), Gaps = 10/213 (4%) Query: 21 NLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVL 80 NL R+ AS L AK +CA + ++++L G++E A+ ++LKV Sbjct: 3 NLKRFTAIAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLKVS 62 Query: 81 EAGGYSQLATQQAQIDQCKQWGAEAILLG---SSTTSFPDLQKQVASLPVIELVNAIDAP 137 A LA Q I+ C +AI++ S P + + A++PVI + + Sbjct: 63 VAN--QDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAENS 120 Query: 138 QVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLL-MPGPDNAGGSKEMVEGFRAAIAGSP 196 ++ S + + G G+ V+ GK V+L PG + + ++GFR A+A + Sbjct: 121 KIVSHIATDNYGGGVVAGKLAVKQLGGKGQVVMLSYPGISSV---EARLQGFRDAVADTD 177 Query: 197 VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVV 229 ++IV + G E + + ML+ +P+ D++ Sbjct: 178 IKIVAVQPGKTREESMTSTIN-MLQANPDTDLI 209 >UniRef50_Q7WIY8 Putative sugar ABC transport system, substrate-binding protein n=2 Tax=Bordetella RepID=Q7WIY8_BORBR Length = 361 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 9/265 (3%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDL-KVLEAGGYSQLATQQAQID 96 P+ A++ KL L D+++ + YG+ + ARR V++ +V AG Y + Q AQ+ Sbjct: 48 PIVARQPLKLGVTVVHLLDNFYKGIAYGIVDEARRSNVEVVQVAVAGAYGNVQQQFAQLQ 107 Query: 97 QCKQWGAE-AILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQ--MGYQ 153 K G + A+L ++ + + + +A + + I K GV +G Sbjct: 108 SFKTLGVDYAVLSPAAYSGYDPVVADLARSGIKTISAGIPVNSDKIAFGVLQDDTLIGKV 167 Query: 154 PGRYLVQ-WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIAL-GDNDIEI 211 G+ L A GK V+++PG S+ EGF+ + ++ A G+ + Sbjct: 168 LGKALCDDGAQGK--QVIVVPGAAGLEWSRLRYEGFKEVASACGAKLTPAAFRGEMSLAD 225 Query: 212 QRNLLQEMLERHPEID-VVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRV 270 Q++L R P+ + V A+ R P+ V++ + + ++ GR+ Sbjct: 226 GMAQTQDLLMRTPDAEYVFTPVTFLGMGAVRAARQANRPVKVLTSAMVKENEAMIREGRL 285 Query: 271 IMAASDQMVWQGELAVEQAIRQLQG 295 + AS+ V G L V+ AIR+ +G Sbjct: 286 LAVASEPGVIMGRLIVQYAIREHEG 310 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/283 (19%), Positives = 125/283 (44%), Gaps = 14/283 (4%) Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 + + +L YW ++ G +AA+ GV ++VL + + Q + I+ G +A+ Sbjct: 41 VAVVLKALNSDYWKTVQAGANDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDAL 100 Query: 107 LL-----GSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW 161 ++ ++ T+F +K+ +PV+ + + + KS VG G G Y+ + Sbjct: 101 VVAPLQPNAAITTFDKAEKE--KIPVVLIDTDANWDKKKSFVGTGNIAAGKLGGEYISKK 158 Query: 162 AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLE 221 K +++ G E +G + A+ + +++V+I +++ E ++++ +L+ Sbjct: 159 LK-KGDEAIIIRGVPGDRTQDERTQGAQKALEAAGIKVVEIQPANSEREKAISVMENLLQ 217 Query: 222 RHPEIDVVAGTAIAAEAAMGEGRNL----KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQ 277 HP I V T E A+G + L K + + S + +K G + + Sbjct: 218 THPNIKGVFCTN--DEMALGAVKALQQAGKKNIISIGVDGSPDALKSIKEGGLTGTVAQN 275 Query: 278 MVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 G+ VE A++ L+G+ V + ++ +N + + + Sbjct: 276 SYDIGKKGVETAVKVLRGEKVETRIDTGTTLVDKQNVNEQEAK 318 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/325 (20%), Positives = 134/325 (41%), Gaps = 29/325 (8%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 R+L+ + F+L A + Q + + + +++ P+ D + Sbjct: 6 RILIIFAATCFLLTACA---------------QKKSIVYKSKKYRIGLSIPASDDVFRNK 50 Query: 62 LNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK 120 + M+ A+ DL V+ A G A Q++QI AIL+ T Sbjct: 51 IINAMENEAKNLPDTDLVVVNAKG--DPARQKSQISNLVAQKCNAILVLPVDTLLSSDYT 108 Query: 121 QVAS---LPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 Q+A+ +P+I + N + + + VG G Y V+ +GK NV+++ G Sbjct: 109 QIANDSGIPIISVNNFLKNQDDAAAYVGSDSITSGIMEAEYAVKQLNGKG-NVVILKGEP 167 Query: 177 NAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT--- 232 N + + EGF+ + P ++I+D GD + + + ++ + D + Sbjct: 168 NHETAIKRTEGFKQVLQNYPEIKIIDEQYGDWKRTLGMQITENWIKNGTKFDAILANNDE 227 Query: 233 -AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 AI A A+ E NL + V + + LK G + + QG A++ A + Sbjct: 228 MAIGAIMALKE-NNLINNVFVGGIDATPDALKLLKEGSLKVTVFQNAAGQGSEAIKAAYK 286 Query: 292 QLQGQSVSDNVSPPILVLTPKNADR 316 ++G+ ++ + P ++ P +AD+ Sbjct: 287 LVKGEKINKKIFVPYELVVPNDADK 311 >UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF94_9GAMM Length = 319 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/295 (22%), Positives = 131/295 (44%), Gaps = 20/295 (6%) Query: 33 VQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQ 92 ++ +TP+ K+ + SL + +++ + G ++AA GV+L ++ +G L QQ Sbjct: 27 IEQATPVDKP---KVLLVMKSLVNPFYIQMEQGARQAANELGVEL-IVRSGTNETLVEQQ 82 Query: 93 -AQIDQCKQWGAEAILL--GSSTTSFPDL-QKQVASLPVIELVNAIDAPQVKSRVGVPWF 148 + ID+ G +A+++ S P L + + ++ + N ID ++ R G+P Sbjct: 83 ISLIDEQLAAGIDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQ-RAGLPAI 141 Query: 149 QM--------GYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIV 200 GY+ G+ L + A G L++ GP +A ++E +G R A+ + + +V Sbjct: 142 PFVSVDNEFGGYEAGKILAELA-GPDAKALIIEGPRSAINARERRDGARRALQENNIEVV 200 Query: 201 DIALGDNDIEIQRNLLQEMLERHPEIDVV--AGTAIAAEAAMGEGRNLKTPLTVVSFYLS 258 + +E L Q + R+PE++V+ A +A A + + + F Sbjct: 201 ASEVASWKLESAYALTQNVHARNPELNVIFAANDMMALGALLYAQEHGLNDWLIAGFDNI 260 Query: 259 HQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 ++ GR+ + Q QG V A+ L ++V D V V+T + Sbjct: 261 PDARAAVREGRLAVTIDQQADRQGYQGVATAVDLLNDKAVDDVVLVKTRVITADD 315 >UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQW7_9CLOT Length = 354 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 79/305 (25%), Positives = 128/305 (41%), Gaps = 18/305 (5%) Query: 34 QASTPLKAKR-AWKLCALYP-SLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 + + P +AK A K+ A+ P SL YW + G Q A G + + L Q Sbjct: 50 ENAAPTEAKEDAEKVIAVIPKSLLFDYWQYVRIGAQSAGLDEGYAIDFQGTRTDTDLEGQ 109 Query: 92 QAQIDQCKQWGAEAILLG--SSTTSFPDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWF 148 ++ Q G AI++ + P LQ+ + A +PVI + ++A +S V Sbjct: 110 VKLVEDFIQRGVSAIVISPVNPDGMVPVLQQAEDAGIPVIIMDGKLNADFPRSTVSTNDE 169 Query: 149 QMGYQPGRYLVQWAH---GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIAL 204 G L + A G V +PG GG ++ GF + P +I+ Sbjct: 170 AAGKFAAEKLKELAGDAGGTFAIVSAVPGAVQEGGREK---GFSDELGTYPNYKIIGTYY 226 Query: 205 GDNDIEIQRNLLQEMLERHPEID----VVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQ 260 G D N+ Q++L +P+I V G++ + EG +LK + V+F S + Sbjct: 227 GKGDRNQTYNITQDILTSNPDITGFYTVNEGSSAGVTLGVREG-DLKEKI-FVAFDPSTE 284 Query: 261 VYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 V ++ G V A + G AV AI+ L G++V + P+ +T N D I+ Sbjct: 285 VLDAIRDGYVDGAVAQNPYLIGRTAVLNAIKVLNGETVEKKIDVPVTWVTIDNLDDPEIQ 344 Query: 321 RSLSP 325 L P Sbjct: 345 NVLKP 349 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 15/182 (8%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAE-----AILLGSST 112 YW + G++ A + GVD K Q AQ+ + + AE AI T Sbjct: 32 YWSQVEQGVKAAGKALGVDTKFF----VPQKEDINAQLQMLESFIAEGVDGIAIAPSDPT 87 Query: 113 TSFPDLQKQVA-SLPVIELVNAIDAPQVKSRV--GVPWFQMGYQPGRYLVQWAHGKPLNV 169 P ++K + +PVI L D+P V G +Q GY G + + GK V Sbjct: 88 AVIPTIKKALEMGIPVITL--DTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLGGKG-KV 144 Query: 170 LLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVV 229 ++ G A S + ++GF+ AIA S + IVDI + D +L + L HP++D Sbjct: 145 VIGTGSLTAMNSLQRIQGFKDAIADSEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAF 204 Query: 230 AG 231 G Sbjct: 205 FG 206 >UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic component n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK7_ANOFW Length = 332 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 65/273 (23%), Positives = 126/273 (46%), Gaps = 22/273 (8%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI-DQCKQWGAEAILLGS--STTS 114 YW + G +EA + Y V+++ + G +Q ++ ++ + I++ + Sbjct: 66 YWRKIEQGAKEAGKNYDVNIEYI--GPLRTSVDEQVKLLEKAIASRVDGIIVQNLKDEAF 123 Query: 115 FPDLQKQVA-SLPVIELVNAIDAPQVKSR----VGVPWFQMGYQPGRYLVQWAHG-KPLN 168 P + K ++ ++PVI IDA KSR VG F+ G G+ +V G + L Sbjct: 124 IPLIDKAISRNIPVI----TIDADAPKSRRIAYVGTNNFEAGQLLGKAVVSRVEGERELG 179 Query: 169 VLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL-LQEMLERHPEI 226 V++ G D + + ++GF + IA P +++V +A N IQ ++ ++ML +HP I Sbjct: 180 VMI--GTDTSENQRLRLQGFLSVIAEHPRLKVVSVA-SSNISRIQASIQAEQMLRKHPHI 236 Query: 227 DVVAGT-AIAAEAAMGEGRNL-KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGEL 284 V+ GT A+ A +NL + + + F + +++G ++ + G Sbjct: 237 SVMVGTSALDAIGIRMATKNLHRQDIQIFGFDDVEETIEAIQQGDIVATVVQKPYDMGYS 296 Query: 285 AVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 AV+ + L G+ + I V+ +N +E Sbjct: 297 AVKLMVEHLSGKQIQKEHFTAIEVIDRQNVQQE 329 >UniRef50_Q89SY1 ABC transporter sugar-binding protein n=4 Tax=Rhizobiales RepID=Q89SY1_BRAJA Length = 329 Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 16/260 (6%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARR---YGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 K AL ++ +W G+++A + Y ++L V G A Q+ ++D G Sbjct: 40 KTIALVTNVAADFWTIAGRGLEKAQKEHPDYNIELIVTNEG---TAAGQRRELDDLLVRG 96 Query: 103 AEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVK--SRVGVPWFQMGYQPGRYLVQ 160 I + Q + + + DAPQ + +G G Q G ++ Sbjct: 97 VAGISISVDDAPHATEQLNKVAAKTVLITTDSDAPQSNRLAYIGTDNVAAGRQAGEE-IK 155 Query: 161 WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEML 220 A + L G +A ++E V+G + AIAG+ V +VD+ D + ++ +L Sbjct: 156 KALPNGGKIALFVGTMDADNARERVQGIKEAIAGTKVELVDVFTDQVDFAKAKANMENVL 215 Query: 221 ERHPEIDVVAG-----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAAS 275 ++P+I +++G T + +A G+ K + +V F + RG+ G + Sbjct: 216 VKYPDIALLSGLWSYETPLIYDAVKAAGKAGK--VKIVGFDEDQRTLRGVSDGTIESTVV 273 Query: 276 DQMVWQGELAVEQAIRQLQG 295 Q G L+ I+ L G Sbjct: 274 QQPYEFGYLSATNIIKTLNG 293 >UniRef50_C5RJT9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJT9_CLOCL Length = 330 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 64/311 (20%), Positives = 132/311 (42%), Gaps = 38/311 (12%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 + + LL+S+ + P F Q + ++ + + + D YW ++ Sbjct: 13 IFIALLISIIVFP---------------FYYQKRISTQNEKIKNISLILLNQSDDYWKNV 57 Query: 63 NYGMQEAARRYGVDLKVL--EAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK 120 G + AA+ + + L ++ E GG + QQ I++ +A+LL S SF +L + Sbjct: 58 KLGAETAAKEFDIKLNIVAPEDGG--DITIQQNLINEAVAMKVDALLLVPS--SFQELVE 113 Query: 121 QVAS-----LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 V + + V+ + + ++ ++ + G G LV A + ++ G Sbjct: 114 PVEAAVNKGIIVMTVDSKVNTAKIACCIATDNLSAGKSAGEKLVSLARMNSVAAIV--GF 171 Query: 176 DNAGGSKEM--VEGFRAAIAG-SPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT 232 D GS E +G + ++++D D + +E++ + +I V+ Sbjct: 172 DKKTGSNEFDRYKGIKEVTKDYKEIQVIDRWCDIKDSNGAERIAKELISNNEDISVI--I 229 Query: 233 AIAAEAAMGEGR-----NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVE 287 A+ +A++G R LK + VV+F +Q + ++ G + G LAV+ Sbjct: 230 ALNYKASIGVARAIEKLGLKGKIKVVAFDGDYQEVKYMEDGTIQSVVIQSPFSMGYLAVK 289 Query: 288 QAIRQLQGQSV 298 A+ +LQG+S+ Sbjct: 290 NAVLKLQGKSI 300 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/273 (21%), Positives = 122/273 (44%), Gaps = 25/273 (9%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG--SSTTSF 115 +++ + Q+ A G+ + +A S ATQ Q+ G +++ S Sbjct: 61 FFVQMRESAQKKADELGLAINFQDAADDS--ATQSNQLANAAASGTGVVIINPTDSDAMA 118 Query: 116 PDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 P +Q+ V +PV+ + A++ V S + G Q + L +G+ +L++ G Sbjct: 119 PAVQQLVDEKIPVVAVDRAVNNANVASYIASDNETGGKQAAKVLSDAINGEG-EILVLQG 177 Query: 175 PDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQR----NLLQEMLERHPEIDVV 229 + S+E +GF + +P +++V E +R ++ +L+ HP + + Sbjct: 178 KTGSSASRERGKGFDEGLKDNPNIKVV----AKQTAEFERAKGLDVTTNLLQAHPNVKAI 233 Query: 230 AGT----AIAAEAAMGE--GRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGE 283 A+ A A+G G+++K V+ F + + +K GR+ + + Q V E Sbjct: 234 FAENDEMALGAIEALGSKAGKDVK----VIGFDGAEDALKAIKDGRMYASIAQQPVKMAE 289 Query: 284 LAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 AV +A + L+G++ + + ++ T +N D+ Sbjct: 290 QAVIEASKLLKGETATKKMQVEVVAATKENVDK 322 >UniRef50_UPI0001C3100C periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3100C Length = 322 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 75/298 (25%), Positives = 122/298 (40%), Gaps = 38/298 (12%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAE 104 ++ L PSL+ ++ + G +EAA++ G ++KV + A+ID G + Sbjct: 42 RVYVLLPSLESDSYVQESRGAEEAAKQIDGAEVKVDAGASRGEATNLIAKIDSAVTKGYD 101 Query: 105 AILLGSSTTSF---PDLQKQVAS-LPVIELV-NAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 I + P L + +A+ + V+ N D + + VG +Q G GRYL Sbjct: 102 VIAVNPGAVGAELAPALSRAIAADVDVVAFDQNVPDLDDLSAYVGYDGYQAGLLRGRYLT 161 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFR-------------AAIAGSPVRIVDIALGD 206 + PD GG+ M++ F+ A + GS +R+V Sbjct: 162 KAL------------PD--GGAVGMIDCFKENPLTAAINRGQLAGMEGSRLRVVSELEAQ 207 Query: 207 NDIEIQRNLLQEMLERHPEI-DVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGL 265 D R + ML HPE+ ++AGT IAA AA+ + PL VV R + Sbjct: 208 CDPAKARTAAENMLTAHPEMRGLLAGTDIAAMAALPVVESFGKPLVVVGGDGQQDALRVI 267 Query: 266 KRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSL 323 G I A + + EL E A+R + V ++V P DR ++ + L Sbjct: 268 AEGGGIQATT--LFPFAELGAE-AVRTAVAVGRGEQVDAEVMV-EPTLIDRANVEKFL 321 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/274 (20%), Positives = 122/274 (44%), Gaps = 13/274 (4%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 K+ + +L + +++++ G ++ A + G DL VL++ + A ++A ++ Q G A Sbjct: 31 KIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVVLDS--QNDPAKERANVEDLIQLGVIA 88 Query: 106 ILLGSSTTSFPDLQKQVAS---LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 +L+ + + +VA+ +PVI L + ++ S + + G Y++ Sbjct: 89 LLINPTDSDAVVKTVEVANKSNIPVITLDRQANGGKITSHIASDNIKGGEMAAEYVLDKF 148 Query: 163 HGK--PLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEM 219 + P+NV+ + G A +++ EGF + + I D D + +++ + Sbjct: 149 KDEKGPINVVEIQGIPGASATRDRGEGFHNIMDKNDKFNFISIQAADFDRQKGLQVMENI 208 Query: 220 LERHPEIDVVAGTAIAAEAAMGEGRNLKTP---LTVVSFYLSHQVYRGLKRGRVIMAASD 276 ++ +P I VV A E A+G + +K V+ F + + + + Sbjct: 209 IQANPNIQVV--FAHNDEMALGAVKAIKASGINALVIGFDGNDDAKDSIDANEMTAIIAQ 266 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLT 310 Q G L VE A + +G+S+ + ++ + V T Sbjct: 267 QPDLIGALGVELANKIYKGESIKNKIAADLKVYT 300 >UniRef50_A6BDJ9 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDJ9_9FIRM Length = 339 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/242 (21%), Positives = 107/242 (44%), Gaps = 11/242 (4%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 KAK + + + S YW+S+N GM+ AA +Y +D+ L Q+ Q+++ Sbjct: 50 KAKDRYVVGVVTKSNTSEYWMSVNSGMEAAAAKYDMDVITLAPDSELDREVQEKQVEKLI 109 Query: 100 QWGAEAILLGS-STTSFPDLQKQVASLPVIELVNAIDAPQVKSR---VGVPWFQMGYQPG 155 +A+ + + PD ++ + + D V +G+ + GYQ Sbjct: 110 DQNVDALAVAPIDSYHVPDYLDEIEKKKITAV--CFDNGMVGGELPYIGIDNHKTGYQLA 167 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVD-IALGDNDIEIQRN 214 + L + K V ++ G G +E VEGF + P V + G ++++ Sbjct: 168 QELAEQLDHKG-QVGIVAGDLKQKGHRERVEGFEEYMKSEPEMTVKFVESGYANLQMSEQ 226 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-TPLTVVSFYLSHQVYRGLKRGRVIMA 273 +++++ ++P+I + T +A AMG LK T + +V+ + ++ G+++ Sbjct: 227 KVRDLMGQYPQIRGIMAT--SAVTAMGLVDELKDTDIKIVAVDEQEDSLKAVENGQILAL 284 Query: 274 AS 275 A+ Sbjct: 285 AA 286 >UniRef50_Q6W1J5 Putative RbsB, ABC-type sugar transport system, periplasmic component n=1 Tax=Rhizobium sp. NGR234 RepID=Q6W1J5_RHISN Length = 297 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 48/287 (16%) Query: 54 LKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT 113 L D +W G+ +AA R+ VD++ L G +S Q ID + + I+ + Sbjct: 15 LGDVFWEVFRRGLLDAAARFDVDVEHLRPGKFSP-EIQAGLIDGARHARPDGII-----S 68 Query: 114 SFPD-------LQKQVAS-LPVIELVNAIDAPQVKSR------VGVPWFQMGYQPGRYLV 159 + PD L+ +A +PVI VNA D+ R +G F G GRYL+ Sbjct: 69 TVPDVAAVEGALKAAIADGIPVI-CVNAKDSRPEGERIPYLFYIGGDDFNAGELAGRYLL 127 Query: 160 QWAHGKPLNVLLMPGPDN----AGGSKEMVEGFRAAI--AGSPVRIVDIALGDNDIEIQR 213 + H KP + + D+ + GF++A AG P + + G E Sbjct: 128 E--HVKPRAAMCV---DHYLYQHICHSDRWHGFKSAFDKAGVPAERLRVPGGQP--EECA 180 Query: 214 NLLQEMLERHPEIDVV-------AGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLK 266 + + +E +P +D V A + AEA +G GR K ++F ++ G++ Sbjct: 181 EAVAKYMESNPNVDAVLTLGPPGAQAVLDAEAIVGAGRTWKH----LTFDVAQLQLDGIR 236 Query: 267 RGRVIMAASDQMVWQGELAVEQA-IRQLQGQSVSDNV--SPPILVLT 310 GR++ Q QG LAV+ + + QG +++ ++ P I+ L+ Sbjct: 237 SGRIMATIDSQQYLQGFLAVQHMWMHKTQGFTLAADIYTGPAIVDLS 283 >UniRef50_C6J068 ABC-type sugar transport system n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J068_9BACL Length = 330 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/266 (22%), Positives = 114/266 (42%), Gaps = 14/266 (5%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL-GSSTTSF- 115 YW + G EAA +YG+D++ + + Q +++ +AI++ G + F Sbjct: 66 YWEMVEKGAAEAAEKYGIDIE-FTGPVRNNMEEQLNLLEKAIAARVDAIIVQGLNEERFT 124 Query: 116 PDLQKQVA-SLPVIELVNAIDAP--QVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLM 172 P + K V +PV+ + DAP Q + VG G + GR +V+ G +++ Sbjct: 125 PVIDKAVRRGIPVVTI--DTDAPNSQRLTYVGTDNLAAGERLGRLVVETTGGIGKIGVII 182 Query: 173 PGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQ--EMLERHPEIDVV 229 D A + ++G + +A + IVD+ ++I + Q ML HPEI ++ Sbjct: 183 G-SDQAANQLQRLDGLKKIVAEHEGLEIVDVR--SSNISHMEAIQQAANMLRNHPEITIM 239 Query: 230 AGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 GT+ + + + LT++ F + +++G + + Q GE AV Sbjct: 240 VGTSATDALGVLQAAKNRDDLTIIGFDNQKETLEAIRKGEIEATVAQQPFLMGETAVRLL 299 Query: 290 IRQLQGQSVSDNVSPPILVLTPKNAD 315 GQ++ + VL N + Sbjct: 300 YEHFGGQALKKAYFTEVKVLNAHNVE 325 >UniRef50_B5WB27 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Burkholderia sp. H160 RepID=B5WB27_9BURK Length = 301 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 9/196 (4%) Query: 123 ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSK 182 A +P++ V+ + V S VG + +YL Q G VL++ GP ++ S Sbjct: 90 AGIPIVSFVSPVATAPVVSHVGADDAALAKAVAQYLFQHLDGH-ARVLVVTGPVDSSTSI 148 Query: 183 EMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEID--VVAGT--AIAAE 237 E + GF AA A P + +V G+ E L HP D +VA AI Sbjct: 149 ERLAGFHAAAADFPGIELVGTIAGNYARTTAHTRTAEWLAGHPCPDACLVANDFMAIGVL 208 Query: 238 AAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQS 297 A+ E + VV + + +GR++ +A + LA + AIR LQG S Sbjct: 209 EALAEKQCTSN---VVGVNAIPEAITAISQGRMLASADFSAMQMAFLATQCAIRYLQGLS 265 Query: 298 VSDNVSPPILVLTPKN 313 V V P+ ++ N Sbjct: 266 VPAEVQLPVRIVDHSN 281 >UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J484_9BACL Length = 329 Score = 51.2 bits (121), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 47/201 (23%), Positives = 93/201 (46%), Gaps = 21/201 (10%) Query: 55 KDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST-- 112 + YW + G + AA+ + V L + + + Q +++ + +AI+L +S Sbjct: 50 RGDYWKTTKLGAEVAAKEFNVRLNFVAPENENDVEGQIRLMEEAIERRPDAIILAASDYE 109 Query: 113 --------TSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHG 164 TS+ D+ PVI + + + + +VK+ VG ++ G + LV G Sbjct: 110 ALGQVTDRTSYYDI-------PVISMDSEVASTKVKTFVGTNNYEAGQKAAERLVDLT-G 161 Query: 165 KPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERH 223 + ++ A + + EGF +A P V +VDI +D + L +ML+R Sbjct: 162 PVSEIGIINFVKGARNANQREEGFLDYVARFPDVHVVDIQYCGSDEYLAYKLTADMLKRF 221 Query: 224 PEIDVVAGTAIAAEAAMGEGR 244 P ++ + +++AE+++G GR Sbjct: 222 PNLNGI--VSLSAESSIGAGR 240 >UniRef50_Q5IH17 PydC n=1 Tax=Rhizobium sp. TAL1145 RepID=Q5IH17_9RHIZ Length = 306 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 93/197 (47%), Gaps = 8/197 (4%) Query: 54 LKDSYWLSLNYGMQEAARRYGVDLKVLE-AGGYSQLATQQAQIDQCKQWGAEAILLGSST 112 L D++W + YG+ + A+R V + + AG Y + Q +QI+ + G + ++LG++ Sbjct: 60 LNDNFWKGIAYGIADEAKRSNVTVAQISIAGAYGNVTQQFSQIETLQSLGVDYVVLGAAA 119 Query: 113 TSF--PDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNV 169 P L++ + A + VI +D+ V V +G + + + A V Sbjct: 120 YKGYDPQLKRLKDAGIGVIAAGIPVDSKNVDFGVTQDDGAIGVGLAKEICEAAGSDKAGV 179 Query: 170 LLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQ--EMLERHPEI 226 + +PGP A ++ ++G A+ P V +V A+ +E+++ L Q +ML+++ + Sbjct: 180 IALPGPAGAEWARLRLDGLEQALKACPNVTLVKGAV-TGGLELEQGLTQASDMLQKNSDT 238 Query: 227 DVVAGTAIAAEAAMGEG 243 + I A G G Sbjct: 239 KFIFTPVITAWTWCGPG 255 >UniRef50_B9TFQ8 Putative uncharacterized protein (Fragment) n=1 Tax=Ricinus communis RepID=B9TFQ8_RICCO Length = 153 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 A + W++ L+P +KD YW + YG+ A+R GV +L A GY L Q ++D+ Sbjct: 65 ASKRWRIAFLFPHMKDPYWSGVAYGVISEAKRLGVAADILPAAGYDDLHGQLRKMDEAIA 124 Query: 101 WGAEAILL 108 +AI++ Sbjct: 125 ARYDAIVV 132 >UniRef50_C8STD2 Monosaccharide-transporting ATPase n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8STD2_9RHIZ Length = 329 Score = 50.8 bits (120), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 68/312 (21%), Positives = 129/312 (41%), Gaps = 26/312 (8%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 A+ A K+ A+ L + ++ ++ G++E A+ GV++ V A Q ++ Sbjct: 24 AEDAAKVAAIVKGLDNPFFQTMQKGIEEQAKASGVNVSVQAAANMGDATGQADRLTAMAM 83 Query: 101 WGAEAILLGSSTTS------FPDLQKQVASLPVIELVNAIDAPQVKSR-------VGVPW 147 + L+ + S P QK+ P++ + + IDA Q K+ +G Sbjct: 84 QDFDCYLVNPISVSNLVQALVPVAQKK---KPIVNIDSTIDAEQAKAAGFAVSTYIGTDN 140 Query: 148 FQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDN 207 G G +++ K V L+ G GS ++GF+ A+ G + +V + D Sbjct: 141 VAAGALAGEEMLKLVP-KGSKVALIAGIVGDVGSNARIKGFKQAVEGK-LEVVVMVSADW 198 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGTAIAAE-AAMGEGRNLKTP---LTVVSFYLSHQVYR 263 D E ++L HP++ AG A + A+G R ++T + V+ + Sbjct: 199 DREKALTAATDILAAHPDL---AGFFAANDIMALGVERAVQTSGKDVKVIGLDGIVDALK 255 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSL 323 + G + + G + +E +G+ + NV P+L++ NA+ I+ Sbjct: 256 SIAAGELSATVAQYPYVVGAMGLEACAVAAKGKELPANVPAPVLLINKDNAE-ASIKNFP 314 Query: 324 SPGGFRPVYFYQ 335 PGG P F + Sbjct: 315 RPGGDYPDPFRE 326 >UniRef50_A7VYE8 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYE8_9CLOT Length = 341 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 25/264 (9%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARR---YGVDLKVLEAGGYSQLATQQAQIDQC 98 K+ + L PS K +++ + G A R +GV L++ E GY + + Sbjct: 59 KKPVTIGCLLPSDKITFFHDVIRGFFRAERELSDFGVSLRLKEVRGYDP----EIHLAAL 114 Query: 99 KQWGAEAI-LLGSSTTSFPDL-----QKQVASLPVIELVNAIDAPQVKS--RVGVPWFQM 150 ++ AE + L +T P++ Q +PV + ID P V +G + Sbjct: 115 RELLAENVSALCVATIETPEITALLNQTAAEGVPVAAI--NIDLPHVNRLFYIGSNYLAG 172 Query: 151 GYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG--SPVRIVDIALGDND 208 G G L A G P+++ ++ G N +EGF + + +VD+ + +D Sbjct: 173 GRTAGGLLSLMAKG-PVSLFVVAGSSNIHSHHLRIEGFAQVMKEKETAYTLVDVQVTQDD 231 Query: 209 IEIQRNLLQEMLERHPEIDVV----AGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRG 264 E+ + +L+ HPEI+ + +G+A A+ E K +TV++F + + R Sbjct: 232 SEVAYEATKRVLQEHPEINYIYITTSGSAPGVCRALEELER-KKRVTVIAFDDNKENKRL 290 Query: 265 LKRGRVIMAASDQMVWQGELAVEQ 288 +K G + + + QG A+ Sbjct: 291 MKEGSIDVLLCQESFRQGYDAINH 314 >UniRef50_C3JFS7 ABC transporter, nucleotide binding/ATPase protein n=2 Tax=Rhodococcus erythropolis RepID=C3JFS7_RHOER Length = 334 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 62/274 (22%), Positives = 113/274 (41%), Gaps = 10/274 (3%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 K+ + +L+ Y+ +N + A + GVDL+++ G Q D G +A Sbjct: 55 KVGLVTINLQALYFNQINNAAKNVADKAGVDLQIIS--GNDDSVAQANAFDNLIAAGVDA 112 Query: 106 ILLGSSTTSF--PDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 I++ + T P + K + A +PV+ + ID P + ++VG + G + G L A Sbjct: 113 IIVDAIDTDGIKPSVVKAKNAGIPVVAVDATIDDPALSTQVGTANAEGGAKIGNTLADVA 172 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLER 222 + + + G N+ E +GF + G + + + G N E + + +L Sbjct: 173 NNT--GTVGIVGALNSTVQLERQKGFTETVTGRGMTVGTVVDGRNIQENAQTAAENLLTG 230 Query: 223 HPEIDVVAGT---AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMV 279 ++ V T A+ A + + + V + LS Q GLK G + Sbjct: 231 GGDMKYVYATGEPALIGLVAAVNSQKAQDRIEAVGWDLSDQAVGGLKAGWLKGVVQQNTF 290 Query: 280 WQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 G A+ AI G+ N+ P ++TP+N Sbjct: 291 EFGHEAMNSAIDLACGRGAPANIPVPTQIVTPEN 324 >UniRef50_A4IT20 ABC transporter sugar-binding protein n=9 Tax=Bacillaceae RepID=A4IT20_GEOTN Length = 337 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/241 (25%), Positives = 101/241 (41%), Gaps = 30/241 (12%) Query: 9 LSLFMLPAFSADNLLRWHDAQHFTV-QASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQ 67 +SLF+ A S W+ + V + T KAK + + L + YW + G + Sbjct: 14 ISLFIGSA-SLTTYCAWNVYMYSGVGEEKTLAKAKDTYHFVLVPEELDNDYWRLVEKGAK 72 Query: 68 EAARRYGVDLKVLEAGGYSQLATQQAQIDQ----CKQWGAEA----ILLGSSTTSFPDLQ 119 AAR VDL+ + +QA ID+ K+ A I G + F + Sbjct: 73 AAARELDVDLEY--------IGPRQANIDEHLRILKKAAAAKVDGIITQGLTEAEFVPVI 124 Query: 120 KQVASLPVIELVNAIDAPQV--KSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 ++ + L DAP +G + G+ GR LV+ G +NV ++ G Sbjct: 125 NEIVDKNIPVLTIDTDAPTSWRVGYIGTDNYYAGFIAGRALVEDTQGM-VNVAIITGSLT 183 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQE----MLERHPEIDVVAGT 232 A ++ V GFR A+ +RIV + + I R E +L++HPE++ GT Sbjct: 184 AVHQQQRVRGFRDAVKNEKRIRIVAV----EESHITRVQAAEKTYTILKKHPEVNAFYGT 239 Query: 233 A 233 + Sbjct: 240 S 240 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 14/205 (6%) Query: 125 LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEM 184 +PV+ L ++ + +G Q+G Q G Y + ++ + G + + E Sbjct: 131 IPVVVLDRKVEGEAFTTYIGADNVQIGRQAGEYFKNTLLPQGGKIVQLKGLSGSTPAAER 190 Query: 185 VEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVV--------AGTAIAA 236 +GF IAGS + +VD A G+ + + + + +L+ HP+I V G +AA Sbjct: 191 EKGFMEGIAGSKIEVVDTADGEWERSVGQQKMDALLKAHPDIQAVYAQNDPMAEGAWLAA 250 Query: 237 EAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL-QG 295 +AA GR + + + + +++GR ++A++ GE AVE A + L Sbjct: 251 QAA---GRKDLKFVGIDGLPIESGGIKAVEQGR--LSATNLYPTGGEEAVEAARKLLIDC 305 Query: 296 QSVSDNVSPPILVLTPKNADREHIR 320 Q V + P ++T +NA + + R Sbjct: 306 QPVPKEQTLPTELVTRENAAQVYTR 330 >UniRef50_B0NFD0 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NFD0_EUBSP Length = 367 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/288 (20%), Positives = 122/288 (42%), Gaps = 21/288 (7%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 KL A+ +L +S+W+++ G ++ A YGV + V + Q ++ EA Sbjct: 79 KLAAIESTLTNSFWVTMQEGYEDTAEEYGVSIDVQATDSDTDTTGQLDILNNMLVKDYEA 138 Query: 106 ILLGSSTTSFPDLQKQVAS----LPVIELVNAIDAPQVK-------SRVGVPWFQMGYQP 154 I + S T + VA+ + +I N ++ +K +++ V ++ G Sbjct: 139 IAV-SPLTEDCLISGIVAANQNDVKIITTGNEVNEDSLKEAGGKIDAKITVDFYNQGVLG 197 Query: 155 GRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRN 214 +Y++ GK V ++ G + A S +G + + + +V + D D + + Sbjct: 198 AQYIIDKTDGKG-KVAVIAGNEGATQSDARRDGAKETFEDAGMEVVAVEQCDFDAQKAYD 256 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMG-----EGRNLKTPLTVVSFYLSHQVYRGLKRGR 269 ++E +P D+V + A+G E +++K + VV + + ++ G Sbjct: 257 AAAAIIESNP--DIVGIACGNDDMALGVVRALEEKDVKDQVAVVGVDFTEEAKAAIEEGT 314 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSD-NVSPPILVLTPKNADR 316 + G+ AV ++ L+GQ VS S P+ V+ N D+ Sbjct: 315 YDATVAMSPYLMGKEAVIIMLKALEGQDVSKVGDSTPMAVVDSTNVDQ 362 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/279 (22%), Positives = 121/279 (43%), Gaps = 20/279 (7%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI-DQCKQW-GA 103 ++ + +L YW + G + A + GVD+ V+ S++ Q I DQ Q GA Sbjct: 38 RVAVVLKTLSSPYWKYVEAGAKAAGKELGVDVTVVGPNAESEVMQQINMIEDQLNQSPGA 97 Query: 104 EAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAH 163 + T P L + A++PV+ + S +G ++ GY+ G+ L Sbjct: 98 LVVSPSQPDTVVPVL--ETATVPVLLIDTDAKLKNKTSFIGTENYEAGYEGGKLLSSLLQ 155 Query: 164 GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERH 223 K V ++ G + E V+G +AA+ + + IV D+D ++++ +L+++ Sbjct: 156 -KGDKVAIISGALGNTATDERVKGAKAALEEAGMVIVAEQPADSDKTKAMSVMENILQKN 214 Query: 224 PEI--------DVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAAS 275 ++ D+ G A EA +G ++K T + + G K I Sbjct: 215 NDVKGVFAANDDMALGVLRAVEA---KGLDVKVIGTDGTLEAVESILDG-KLAGTIAQNP 270 Query: 276 DQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 +M ++G V+ A+ + G+ V ++ + V+T NA Sbjct: 271 YKMGYEG---VKNALAAINGEKVDKRINSGVEVITKDNA 306 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/258 (20%), Positives = 117/258 (45%), Gaps = 11/258 (4%) Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 + + +L + +++++ G + A+ G +L VL++ + + + + ++ G +AI Sbjct: 29 VAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLDS--QNDPSKELSNVEDLTVRGVKAI 86 Query: 107 LLGSSTTSFPDLQKQVAS---LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAH 163 L+ + + ++A+ +PV+ L +V S + G G + ++ Sbjct: 87 LINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEVVSHIASDNVVGGEMAGHF-IEAKI 145 Query: 164 GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERH 223 G V+ + G ++E EGF A+ GS ++++ D D N+++ +L + Sbjct: 146 GSDAKVIQLEGIAGTSAARERGEGFMNAVKGSKMQLLASQPADFDRTKGLNVMENLLAAN 205 Query: 224 PEIDVVAGTAIAAEAAMGEGRNLKT---PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVW 280 P DV A A E A+G R ++ + +V F + ++RG++ + Q Sbjct: 206 P--DVQAVFAQNDEMALGALRAIQASGKSVMIVGFDGTDDGIAAVERGQLAATVAQQPDM 263 Query: 281 QGELAVEQAIRQLQGQSV 298 G + +E A + L+G+ V Sbjct: 264 IGAIGIETADKMLKGEKV 281 >UniRef50_C0RMD7 Rhizopine-binding protein n=23 Tax=Brucella RepID=C0RMD7_BRUMB Length = 389 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/253 (22%), Positives = 113/253 (44%), Gaps = 24/253 (9%) Query: 76 DLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD------LQKQVASLPVIE 129 DL + +A G +Q TQ QI +AI++ + ++S D +K +A VI Sbjct: 84 DLMITDAQGNAQ--TQIQQIQSMIDANMDAIVIDAGSSSALDRVIADACEKGIA---VIN 138 Query: 130 LVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFR 189 + +D + +++ + G + +++V GK +++M GP S + +G + Sbjct: 139 FDSLVDTENLTAKINTDSAEWGERAAQWMVDQLGGKG-KIIIMNGPAGVSVSDDRRKGAQ 197 Query: 190 AAI-AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT--AIAAEAAMGEGRNL 246 + A + I+ + ++ + + +L +PEID V AIAA A + R Sbjct: 198 PVLDANKGIEIITETNTEYNVAPAQEAMTSLLFANPEIDGVLSLSGAIAAGAVLAFDRQG 257 Query: 247 KTPLTVVSF----YLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNV 302 + P+ + +L +GLK A+ Q W G +V A++ L+G+ + ++ Sbjct: 258 RDPVPITGENARQFLELWKEKGLK-----AWATMQPNWLGAFSVYAAVQALEGKDIPKSI 312 Query: 303 SPPILVLTPKNAD 315 P+ V+ N D Sbjct: 313 KVPLPVIDASNVD 325 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/266 (21%), Positives = 110/266 (41%), Gaps = 29/266 (10%) Query: 27 DAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVD--LKVLEAGG 84 D H + Q + A + W++ L+ + D +W + G+Q A+ G+ +K E Sbjct: 64 DVDHLSHQGT----ATQPWQIAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKP 119 Query: 85 YS------QLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVAS-LPVIELVNAIDAP 137 + Q++T ID G I S P ++K + VI + ID Sbjct: 120 NTLGDVKKQISTILELIDNNDLDGL-VIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTD 178 Query: 138 QVKSRVGVPWFQMGYQPGRYLVQWA-----HGKPLNVLLMPGPDNAGGSKE----MVEGF 188 Q+ + V F+ G G +++Q +N+L++ G + + E +EG Sbjct: 179 QILTFVTFDNFEGGQILGEWVIQKLTQSSRRNNKINILILEGSLHEENTIERRQGFLEGL 238 Query: 189 RAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT----AIAAEAAMGEGR 244 + A + I+D+ D + + + + Q LE+ P IDV+ A+ A A+ E Sbjct: 239 KRANKNYSLEILDLKSADWETKKAKMITQAWLEKFPTIDVIMAADDQMAVGASEAVQEAN 298 Query: 245 NLKTPLTVVSFYLSHQVYRGLKRGRV 270 K+ + + F + +K G++ Sbjct: 299 --KSGIIITGFDGTPYGLNAIKTGQI 322 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 32/223 (14%) Query: 7 LLLSLFMLPAFSADNL-LRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYG 65 L L PAFSAD + + + A + +T K +A+ Sbjct: 15 LATVLTAAPAFSADKIVIGFSQASSNSAHRNTMTKRNQAY-------------------- 54 Query: 66 MQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS-STTSFPDLQKQV- 122 AA + VDL V A G S A Q + ++ G + +++ + + + KQV Sbjct: 55 ---AAEHFKDVDLIVTNAEGKS--AKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVL 109 Query: 123 -ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGS 181 A +PVI L ++D P V VG +G G+Y+ + GK NV+ + G + Sbjct: 110 AAGIPVITLERSLDIP-VTLHVGPHNKPIGTLAGKYIAEALKGKG-NVVEIKGDPAVAPA 167 Query: 182 KEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHP 224 E EGF AIAG+ ++++ D D E +++ L+R P Sbjct: 168 VERHEGFAEAIAGTEIKVIAETHADWDQEKALKFMEDTLQRFP 210 >UniRef50_C8QCH7 Transcriptional regulator, LacI family n=1 Tax=Pantoea sp. At-9b RepID=C8QCH7_9ENTR Length = 339 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 13/190 (6%) Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 L L PS K+ + L G+++A R + L A +++ Q+ W + I Sbjct: 63 LGVLIPSFKNQIFADLLSGIEQATR--ASHYQTLIANYNYDPRSEEEQVRNLLAWNIDGI 120 Query: 107 LLGSSTTSFPDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK 165 +L + ++ + A +P++E+++ + P + +VG F GY R L++ G+ Sbjct: 121 ILCDKQHTHRTVKYLRAARIPIVEVMDT-EGPCLDMQVGYNNFNAGYDMTRMLLE--QGR 177 Query: 166 PLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQR---NLLQEMLER 222 V L D + +GFR A+ +R L ++ QR LL++ L Sbjct: 178 RCIVYLGSLDDRRDACR--FQGFRKAMQEQKLRAA--RLNPREMSSQRLGATLLEQALRL 233 Query: 223 HPEIDVVAGT 232 HPE+D + T Sbjct: 234 HPELDAIFCT 243 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 61/268 (22%), Positives = 110/268 (41%), Gaps = 17/268 (6%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG--SSTTSF 115 Y++S+N ++ A+ L V +A S ATQ + +AIL+ S Sbjct: 62 YFVSMNNAIKSMAKEKNTKLTVSDAQNDS--ATQLNNVQNFISQNVDAILINPVDSDAIV 119 Query: 116 PDLQK-QVASLPVIELVNAIDAPQVKSRV---GVPWFQMGYQPGRYLVQWAHGKPLNVLL 171 P ++ A +PVI + + V + V V +M Q LV GK + VL Sbjct: 120 PAIKAANNAHIPVIAMDRGSNGGTVLTTVASDNVAAGKMAAQAVEKLV----GKNVKVLE 175 Query: 172 MPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG 231 + G A + + +GF + + I+ + D N Q ML+ H DV A Sbjct: 176 LSGTPGASATIDRGKGFNSEAKTLGLNILSSQSANFDRTTGLNTTQNMLQSHK--DVQAI 233 Query: 232 TAIAAEAAMGEGRNLKTP---LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 A E A+G + ++ + + + + +K G + + Q GE+A++ Sbjct: 234 FAQNDEMALGAAKAVQATGQKIAIFGIDGESETHDAIKAGTMTATIAQQPAKIGEMALQA 293 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNADR 316 QG+ ++ ++ PI ++ N D+ Sbjct: 294 TYDYYQGKKIAHMINSPIYLVDKDNVDQ 321 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 63/259 (24%), Positives = 119/259 (45%), Gaps = 17/259 (6%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG---SSTTS 114 +++ L M++AA GV+L V A L Q + ++ G +AI+L S Sbjct: 42 FYVQLKQAMEKAADDNGVELIVSIAN--QDLNKQISDVEDFIVRGVDAIVLSPVDSKGVV 99 Query: 115 FPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 ++ + A +PVI + + + +V + V + G G + + +GK V ++ Sbjct: 100 GAIIKAKRAGIPVITVDISAEGVEVDAHVATDNYYGGRIAGETMAKVLNGKG-QVAIIDY 158 Query: 175 PDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG-- 231 P ++ V GF+ A++ P + IV I G E N Q +L+ HPE+D + G Sbjct: 159 P-VVQSVRDRVAGFKEAVSKYPGIEIVAIQPGITRPE-ALNTAQNILQAHPEVDGIFGFG 216 Query: 232 --TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQ-GELAVEQ 288 A+A+ A+ + ++ + V+ F + +K+ +A Q + G L +E Sbjct: 217 DDAALASVVAV-KSAGMEDDVKVIGFDGMEEARNAVKKEESFVAVVCQYPGEMGRLGLET 275 Query: 289 AIRQLQGQSVSDNVSPPIL 307 A+R ++G+ V + P+L Sbjct: 276 ALRVIKGEKVEKEI--PVL 292 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 64/287 (22%), Positives = 123/287 (42%), Gaps = 21/287 (7%) Query: 53 SLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG--S 110 +L +++++ L G+++ A+ G DL A G +Q A I+ Q G A++L Sbjct: 76 TLNNAFFVGLKAGVEKGAKEQGFDLVQTNANGDAQQQVNDA-INLLSQ-GVTALVLNPID 133 Query: 111 STTSFPDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV-----QWAHG 164 S P ++K A ++PV L D +V S V +G +++ ++ Sbjct: 134 SKAIIPAVEKANAMNIPVFTLDRGSDGGKVTSFVASDNVALGQTAAKWIADQLTKRYGSA 193 Query: 165 KPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERH 223 K NV+ + G + + +GF IA P +++V G D E N + +L+++ Sbjct: 194 KG-NVVDLIGLVGTTAATDREKGFSDEIAKYPDIKVVARQEGAFDQEKSLNAMTNILQKY 252 Query: 224 PEIDVVAG----TAIAAEAAMGE-GR----NLKTPLTVVSFYLSHQVYRGLKRGRVIMAA 274 P+ID V G + AE A+ GR + K + V+ + Q ++ G+ Sbjct: 253 PQIDAVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGADGTAQALSAIRAGKQDATI 312 Query: 275 SDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 S + +++ + V N + P L++ N D + ++ Sbjct: 313 SQNPIQMAAKSLQFVADYTAKKDVPANYAWPTLLIDKSNIDSDATKK 359 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 19/190 (10%) Query: 123 ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSK 182 A +PV+ + + + + VG + +G + GRYL++ GK NV+++ G + + Sbjct: 106 AKIPVVNVTDRSAGGKFLAFVGADDYSLGLETGRYLLKEMGGKG-NVVILEGVKGSLTNV 164 Query: 183 EMVEGFRAAIAGSPVRIVDIA-LGDNDIEIQR----NLLQEMLERHPEIDVV--AGTAI- 234 + V GF A+ D+ L QR +++ +++ HP+ID V A A+ Sbjct: 165 DRVRGFNDALK----EFKDVKLLASQPANYQRLQGLQVMENLMQSHPQIDGVLAANDAMA 220 Query: 235 --AAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 A EA G R K VV + + +K G+++ + QG + AIR Sbjct: 221 IGAIEALDGANRKAK----VVGINGTKEAVDAIKSGKLLASGDYNGFLQGCIGTMVAIRA 276 Query: 293 LQGQSVSDNV 302 L+ +++ + V Sbjct: 277 LRKETIVNEV 286 >UniRef50_UPI0001973330 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973330 Length = 325 Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 69/291 (23%), Positives = 127/291 (43%), Gaps = 37/291 (12%) Query: 45 WKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAE 104 +++ + S + +++ S+ G AA Y V L ATQ I + + GA+ Sbjct: 36 YQVAMIVKSTESAFFQSVFAGAGAAATEYNVSLITEGPESEEDYATQNEMIYKAVENGAD 95 Query: 105 AILLGSSTTSFPDLQKQVAS--------LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 A+++ S D K + +PV+ + + +++ VK R+G + G R Sbjct: 96 ALVI-----SAVDFNKNAEAVDWAAAKGIPVVVIDSDVNSSAVKFRIGTDNEEAGRMAAR 150 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGD--NDIEIQRN 214 + G+ L + ++ +N ++ +GFR A R+ +I + + I+ R Sbjct: 151 AALDGTDGE-LFIGIVNFDENTANGQQREQGFREE-AKKDSRVKEIVTINVPSAIDDTRA 208 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMGEG-----RNLKTPLTVVSFYLSHQVYRG-LKRG 268 + +L HPEI+V+ T ++G G N K ++VV+F S+ V G L+ G Sbjct: 209 ATKGLLSTHPEINVI--TTFNEWTSLGVGWAIRDLNKKDDISVVAFD-SNAVSVGMLETG 265 Query: 269 RVIMAASDQMVWQ-----GELAVEQAIRQLQGQSVS-DNVSPPILVLTPKN 313 V D ++ Q G L VE+A L + V D + ++T +N Sbjct: 266 EV-----DALIVQNPYAMGYLGVEKAWEILSRRGVEGDKLDTETTLVTREN 311 >UniRef50_D1CAQ1 ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CAQ1_SPHTD Length = 357 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 21/198 (10%) Query: 137 PQVKSRV---GVPWFQMGYQPGRYLVQWAHGK-PLNVLLMPGPDNAGGSKEMVEGFRAAI 192 PQV+ +V G+P+F+ G Q +VQ GK P V MPG ++GF + I Sbjct: 156 PQVEGQVVFAGIPFFENGAQIAELVVQACEGKDPCKVAYMPGAPELPLETARLQGFNSVI 215 Query: 193 AGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI----AAEAAMGEGRNLK 247 P ++++ + G E + Q++L +P+I V A + E A+ + L+ Sbjct: 216 EQHPHIQVILTSAGGYLAESALPVAQDVLRANPDIAVFASSGDQMINGVEQAVKDA-GLE 274 Query: 248 TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPIL 307 + +V + + ++ GR + +G+LA E IR ++G+ V Sbjct: 275 GKVALVGNGGTKSAVQAVREGRWFGTVAGYPRSEGKLATEYVIRAVRGEDV--------- 325 Query: 308 VLTPKNADREHIRRSLSP 325 TP+ E + + P Sbjct: 326 --TPRGFGSEDLGAGIGP 341 >UniRef50_Q0SEC5 Transcriptional regulator, LacI family protein n=4 Tax=Rhodococcus RepID=Q0SEC5_RHOSR Length = 344 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 21/163 (12%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 L+ ++ L + P L D ++ G++E A + G VL + L Q+ I+ Sbjct: 69 LRTRKTTTLGVVMPRLTDGVVATMFQGIEETATQAG--YSVLLSSPPDDLDAQRRAIEFL 126 Query: 99 KQWGAEAILLGSSTT---SFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWF-----QM 150 + +LL S + F D V +LP+++L D VG+P+ + Sbjct: 127 VSRQVDGLLLSSLHSPGREFVD-SLSVGALPMLQLNRHAD-------VGLPFVSGDDHRG 178 Query: 151 GYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIA 193 GY GR+L+ + + ++ GPD+A S++ + GFRAA+A Sbjct: 179 GYLAGRHLLDRGFTE---LAVITGPDHASTSRDRLAGFRAALA 218 >UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PA90_9FIRM Length = 338 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 64/290 (22%), Positives = 115/290 (39%), Gaps = 25/290 (8%) Query: 53 SLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL---G 109 S YWL+L G QEA G +L + + Q + ++ +AILL Sbjct: 59 STNSDYWLTLKDGAQEAVDAIGGELVFTGPADNNDIQGQVSLMENLINSKVDAILLTPLD 118 Query: 110 SSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNV 169 S + P + A +PVI + +A++ + S + G L++ G V Sbjct: 119 SDALAAPVEKAMDAGIPVIVIDSAVNTDKYTSFIATDNVAGGRMAMERLIESIGGSGEVV 178 Query: 170 LL-----MPGPDNAGGSKEMVEGFRAAIAGSPV----RIVDIA---LGDNDIEIQRNLLQ 217 ++ +P D G + E + A + G V +D A ++ I L+ Sbjct: 179 VVNALAGIPSNDARG---QGAEEYAATVDGITVLPQQHCLDQAEAMTATENVIIGNPNLK 235 Query: 218 EMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQ 277 + + A AI ++ GE + +V+F + L+ G + Q Sbjct: 236 GIFATFNRGALGAAQAIVSKGKAGE-------IKMVAFDADADEIKLLEDGTIDALVVQQ 288 Query: 278 MVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGG 327 G++ +E A++ L G+ V V+P +++ T N + E I + L P G Sbjct: 289 PYEMGKIGIEYAVKALNGEEVPKTVAPEVVIATKDNMNDEAIHKVLYPKG 338 >UniRef50_A9CGI7 Transcriptional repressor, LacI family n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=A9CGI7_AGRT5 Length = 340 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 33/223 (14%) Query: 50 LYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG 109 L + + ++L + G++EAA G KVL + ID +Q A+ ++L Sbjct: 70 LVRDIGNPFYLEIYKGVEEAAGEAG--FKVLMGDARNDEHRVATHIDMVRQKHADGLIL- 126 Query: 110 SSTTSFP-DLQKQVASLPVI----ELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHG 164 T FP +L Q +LP I E V + P VK V R+L+ H Sbjct: 127 -MTGQFPSELLDQADALPPIVIASETVPGLALPTVK----VDNRAASMNAMRHLIAAGHQ 181 Query: 165 KPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVD--IALGDNDIEIQRNLLQEMLER 222 + ++ + GP ++E +G+RAA+A + + D + GD IE R + +LE Sbjct: 182 R---IVHLAGPVPESLAQERFDGYRAALAEAGIAYADELVVTGDYSIEAGRQAIAGLLEG 238 Query: 223 HPEIDVVAGTAIAAEA---AMG-----EGRNLKTP--LTVVSF 255 +A TAI A + A+G GR L P ++V+ F Sbjct: 239 G-----IAFTAIFASSDQMAIGAISELRGRGLSVPADVSVIGF 276 >UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGQ4_PETMO Length = 342 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 69/335 (20%), Positives = 136/335 (40%), Gaps = 30/335 (8%) Query: 21 NLLRWHDAQHFTVQASTPLKAKRAWKLCALY--PSLKDSYWLSLNYGMQEAARRYGVDLK 78 +L+ + F + + P KA ++ + + + ++ +W + G Q+AA +GV+ Sbjct: 18 SLIGFGQTSFFDISKANPPKAIQSSDMTIFFIVKASENEFWQIVLDGAQKAANHFGVEFI 77 Query: 79 VLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDLQKQVAS-LPVIELVNAID 135 EA S+++ Q + ++ +AI+L + P +++ + S +PVI + + + Sbjct: 78 HQEATSESEVSRQVSILETAISTNPDAIVLAPTVADALVPGIERAMDSGIPVIIIDSMAN 137 Query: 136 APQVKSRVGVPWFQMGYQPGRYLVQWAH-------GKPLNVLLMPGPDNAGGSKEMVEGF 188 S +G + +G + L + GK + M G G + + GF Sbjct: 138 TDNYVSFLGSDNYTIGQRSADELAKALEEKNGSPSGKVAAITYMSG---VGSLEARISGF 194 Query: 189 --RAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEID-VVAGTAIAAE----AAMG 241 R A + +V + + N+ ++L +P++D + A + + A Sbjct: 195 LDRIEEAYPDIEVVSVRDAMGQVGNTINITLDLLTAYPDLDGLYANNQMTGDDMVRALDM 254 Query: 242 EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDN 301 +GRN L V+ S Q GL+ G + Q G V A+ G ++ N Sbjct: 255 QGRN---DLAAVAVDASAQEIWGLENGYLDSVLVQQPWVMGYAGVAYAVMARNGVPLAKN 311 Query: 302 VSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQH 336 V ILV+TP E + + P +Y+ Sbjct: 312 VDTGILVITP-----ESLASGEADAAINPFEYYKD 341 >UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ Length = 339 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 67/300 (22%), Positives = 115/300 (38%), Gaps = 42/300 (14%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQ 97 P K + + + S YWL++ G AA+++GV + + LA Q ++ Sbjct: 37 PAKPAKHYHFTLITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAGQIGMVNN 96 Query: 98 CKQWGAEAILLGSSTTSFPDLQKQVAS-----LPVIEL-----VNAIDAPQVKSRVGVPW 147 G + I+L + L K V S +PV+ + N D S VG Sbjct: 97 AVTGGTDGIILAAQNPQ--ALLKPVKSALAHHIPVVTVDSGLSPNISDCFLATSNVGAAA 154 Query: 148 FQMGYQP-------GRY-LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP--V 197 Y G+Y +V + H A +GF + P Sbjct: 155 ALAKYTADHLMGGKGQYAIVDFNH-------------TASTGIARPKGFMLGMKSYPHIK 201 Query: 198 RIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK---TPLTVVS 254 ++ I +ND+ + ML ++P + V+ G AA+G ++ + VV Sbjct: 202 KMGPIQYSNNDVSAGLRIATTMLTQYPHLKVIFGA--NDRAALGPAEAVQRAHAKVKVVG 259 Query: 255 FYLSHQVYRGLKRGRVIMAASDQMVWQ-GELAVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 F +K G +I A+ Q + G AV + +L G+++ ++ P +LTPKN Sbjct: 260 FDADLGEIALVKAG-IIQASILQSPYDMGYYAVVALLDKLDGKTLPKRINTPYFLLTPKN 318 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 63/295 (21%), Positives = 123/295 (41%), Gaps = 23/295 (7%) Query: 49 ALYPSLK-DSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL 107 AL P L D ++++++ G +EAA+R GV+L + + G TQ ++ +AIL Sbjct: 35 ALIPGLTTDGFYITMHKGAEEAAKRLGVEL-IFQGGPEFSPTTQIPVLNAIIARKPDAIL 93 Query: 108 LGSSTTS---FPDLQKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGY------QPGRY 157 + + + P + A + +I + I + Q ++ G F + Y + GR Sbjct: 94 IAPTDRNQLIAPLKRAHEAGIKIITVDTFIGENGQYQTGKGNADFPLAYVASDNVEGGRI 153 Query: 158 LVQW---AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQR 213 + A G+ V + + + +GF+ + P + ++ DND Sbjct: 154 AARALAKAIGEKGKVYVSNVKPGISTTDQREQGFKEEMKKYPGITVLATQYNDNDANKAA 213 Query: 214 NLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTP-----LTVVSFYLSHQVYRGLKRG 268 + L L R+P++ V G + + A+G +K + V +F + +K G Sbjct: 214 SQLAAALARNPDLAGVFGANLFS--AIGAANGVKNAGKRGAVKVAAFDCPESIINDIKGG 271 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSL 323 + MA G +AVE A++ L G+ + + V+ N D + ++ Sbjct: 272 TIDMAVCQHPAEMGRIAVEWAVKALNGEKIPNRYGTGYTVIDRANVDSAEAKAAI 326 >UniRef50_B0K232 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Thermoanaerobacterales RepID=B0K232_THEPX Length = 324 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 67/147 (45%), Gaps = 8/147 (5%) Query: 56 DSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG-SSTTS 114 D +W + G +AA+RY V ++ A ++ + + +D + I+ S++ Sbjct: 47 DPFWKEVKMGAMDAAKRYNVAIE-FNAPKFNNIQEELQYLDIAILSKVDGIITHVSNSKE 105 Query: 115 FPDLQKQV--ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLM 172 F DL ++ +PVI + N + ++ +G FQ+G + G+ ++Q GK N+ ++ Sbjct: 106 FVDLIEEAYKEGIPVITIENDAKDSKRQAFIGTNSFQLGEEAGKLMIQATKGKA-NIAII 164 Query: 173 PGPD---NAGGSKEMVEGFRAAIAGSP 196 D + + GF AI P Sbjct: 165 VSNDYQLDTVNQNLKINGFLDAIKDYP 191 >UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces RepID=B4UZK6_9ACTO Length = 322 Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust. Identities = 62/288 (21%), Positives = 112/288 (38%), Gaps = 23/288 (7%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 K+ + + + YW +L G ++ GV ++V + + A+I G Sbjct: 21 KIAIVTRNFTNPYWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGYNC 80 Query: 106 ---ILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVK-------SRVGVPWFQMGYQPG 155 + + ++ P + +P++ L IDA K S +G G Q G Sbjct: 81 FGVVPVNATNVITPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQAG 140 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNL 215 L++ GK V ++ G +GF +AG + IV D D + + Sbjct: 141 EGLLKLMGGKG-EVAILQGIAGEQNGINRQKGFTEKVAGK-LDIVATQPADYDQAKGQTV 198 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEG-----RN--LKTPLTVVSFYLSHQVYRGLKRG 268 + +L+ HP+I + AA MG G RN L ++++S +K G Sbjct: 199 TEAILKAHPKITGI----FAANDTMGLGAAQAVRNAGLTGKVSIISVDGISAALEAVKAG 254 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 + S +G+LAV+ I + + V + PI ++ N D+ Sbjct: 255 TLSGTISQYPYAEGQLAVQACIDLVAKKKVPSRIVAPIALIDSTNVDK 302 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%) Query: 125 LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEM 184 +PVI + I + + + +G +++G G Y+ GK NV+ + G + + E Sbjct: 111 IPVILVDRKILSDKYTAYIGADNYEIGRAVGNYIASSLKGKG-NVVELTGLGGSTPAMER 169 Query: 185 VEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVV 229 +GF AAI+ P ++++D A + E + ML RHP+ID V Sbjct: 170 HQGFMAAISNYPDIKLIDKADAAWEREPAEVEMDSMLRRHPKIDAV 215 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 69/306 (22%), Positives = 128/306 (41%), Gaps = 39/306 (12%) Query: 35 ASTPLKAKRAW---------KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGY 85 AST + A AW + AL + + +W ++ G+++AA++ V+L + Sbjct: 6 ASTAVLAALAWGTLGFAQQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQAVASE 65 Query: 86 SQLATQQAQIDQCKQWGAEAILLGS--STTSFPDL-QKQVASLPVIELVNAIDAPQVKSR 142 + + Q Q +A+++ + S P L Q ++P+++L +D P V R Sbjct: 66 TDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLD-PAVLQR 124 Query: 143 VGVPWF--------QMGYQPGRYLV-QWAHGKPLNVLLMPG-PDNAGGSKEMVEGF--RA 190 GV + G Y+V + G VL++ G N G+ +GF R Sbjct: 125 EGVKIAFSISSDNRRAGASAAEYVVSKLGQGFSGKVLVIEGLAGNVTGAARR-DGFTERL 183 Query: 191 AIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEI-------DVVAGTAIAAEAAMGEG 243 +IV GD D N+ + L+RHP++ D +A A+ A A G+ Sbjct: 184 KQIAPNAQIVATLPGDWDRLKAANITNDTLQRHPDLAAIYCANDTMALGAVEAVFAAGK- 242 Query: 244 RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVS 303 + VV + + ++ GR+ + + G A+E ++ ++G+ V + Sbjct: 243 -----KVLVVGTDGNSDAVKSIRAGRLNASVAQLPFLVGSRAIENVLKVIKGEQVDPKII 297 Query: 304 PPILVL 309 P LV+ Sbjct: 298 VPTLVI 303 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 64/297 (21%), Positives = 121/297 (40%), Gaps = 14/297 (4%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 ++A +++ L SYWL++ G + AA+ G ++ + +A Q I+ Sbjct: 25 VQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNVINDF 84 Query: 99 KQWGAEAILLGSSTTS--FPDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPG 155 +AI++ ++ + P L++ A +PVI + + I+A S + + + Sbjct: 85 VNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINADFPISHIATNNKEAAKKAA 144 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG-SPVRIVDIALGDNDIEIQRN 214 L GK V +P A S GF+ I+ + +V + +D Sbjct: 145 EVLANII-GKKGEVACIPFVAGAATSIARENGFKEGISNYKNIDLVAVQYSQSDYATAMK 203 Query: 215 LLQEMLERHPEIDVVAGTAIAAEA-AMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRG 268 + + +L HP + G A EA A+G R LK + +V F + +K G Sbjct: 204 VTENILTAHPNLK---GIFAANEAGAVGAARALKARGKTADVILVGFDAAQTEIDAMKEG 260 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 + + G V+ A+ L+G+ V + ++V TP N + + + L P Sbjct: 261 IIDALIVQRPYMMGYEGVKNAVAALEGEEVEKLIDTGVVVATPDNMNDPEVYKVLFP 317 >UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QS72_MYCS2 Length = 348 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 61/289 (21%), Positives = 113/289 (39%), Gaps = 8/289 (2%) Query: 36 STPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI 95 + P KA + + + L + D +++++ G QE A GV + + Q+ + Sbjct: 51 TAPPKASKNYNIAFLQGVVGDQFYITMQCGAQEEAANLGVTVNTQGPQKFDPT-LQKPIL 109 Query: 96 DQCKQWGAEAILLGSSTTS---FPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGY 152 D +A+L+ + P Q A + V+ + + P + G Sbjct: 110 DSIVASKPDALLVAPTDVQAMQMPLEQAAAAGIKVVLVDTTTNDPSYAVSAIASDNEGGG 169 Query: 153 QPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEI 211 + ++ H + V++M + +GF A+A P V + ND Sbjct: 170 RAAFEAIKQLHPEGGKVMVMGLDPGISTTDARTKGFEEAVAEDPGFTYVGVQYSHNDPAT 229 Query: 212 QRNLLQEMLERHPE-IDVVAGTAIAAE-AAMGEGRNLKTP-LTVVSFYLSHQVYRGLKRG 268 L+ L+R P+ + V A AE +A G + K+ + VV F + L+ G Sbjct: 230 AAQLIGAQLQRDPDLVGVFAANLFTAEGSATGIKQAGKSEQVAVVGFDAGPNQIQALREG 289 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 V + G+ V++A+ L+G S NV ++T +N D E Sbjct: 290 TVQALVAQDPGTIGKFGVDEAVTALEGGENSPNVQTGFTIITRENLDGE 338 >UniRef50_A9KMR5 Putative solute-binding component of ABC transporter n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMR5_CLOPH Length = 334 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 65/346 (18%), Positives = 141/346 (40%), Gaps = 33/346 (9%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ LL ++L+L M+ + +A + + + +S K + + L + YW Sbjct: 1 MKKLLSMMLALVMVFSLTA------CGSTNKSKDSSEGEKT-----IYVIVKVLGNQYWS 49 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL---LGSSTTSFPD 117 + G ++A + G + ++ S + Q I A+AI+ L + P Sbjct: 50 VVQAGAEKAGKDLGCKVVIVGTAAESDIEGQVRYIQDAISAKADAIVVAPLDRTALKNPI 109 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQ------WAHGKPLNVLL 171 ++ + P++ + ++++ + + + G + ++ A K + + Sbjct: 110 SEQFKSGTPIVLIDSSVEGEDYSTALMTDNVEAGRMAAKEMIARLKAKGVAEDKEGTIAI 169 Query: 172 MPGPDNAGGSKEMVEGFRA-----AIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEI 226 G + + ++GF A A V DI + D DI Q+ L + + Sbjct: 170 QAGSTGSMAINDRLKGFNEYWGENAPASWKVLNDDIKINDGDISKAVAFCQDFLTTYTNL 229 Query: 227 DVV----AGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQ- 281 V G+ + + E + +T LT++ F S+++ + ++ G +A+ Q + Sbjct: 230 IGVFGPNNGSTVGFVTGLTEAK--RTDLTMIGFDFSNEIEQMIRGGEYDVASMVQRQYMM 287 Query: 282 GELAVEQAIRQLQGQSVSDN-VSPPILVLTPKNADREHIRRSLSPG 326 G V+ A+ G V + V +LV+ KN D E ++ ++PG Sbjct: 288 GYDGVKTALELANGGKVENKIVDTGVLVVDNKNVDSEDVQGIINPG 333 >UniRef50_B5WJX6 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=B5WJX6_9BURK Length = 338 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 96/209 (45%), Gaps = 17/209 (8%) Query: 50 LYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG 109 + PSL SYW + YG++E A+ G++ +E + A Q + G AI++G Sbjct: 46 IAPSLDISYWQWVAYGVRERAKELGMNY--VEFTSENSPAKQMDNVKTALTRGVSAIVMG 103 Query: 110 --SSTTSFPDLQ-KQVASLPVIELVNAIDAPQV--KSRVGVPWFQMGYQPGRYLVQWAHG 164 SST++ P L+ + S+P+ A Q S V + G G Y+ + A Sbjct: 104 PVSSTSTPPVLRLLKEKSVPIAFAGIGPQAGQTDYTSAVTANNYDTGKAQGSYVCKLAKE 163 Query: 165 KPLN-VLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDI----ALGDNDIEIQRNLLQEM 219 + N + ++ P + +++ ++G + + A +V + L N+ Q N ++ Sbjct: 164 RGGNKIAMLSLPQDRVNAQKYMKGAKESFAADGCDLVQVLETHGLTVNEAVSQAN---DI 220 Query: 220 LERHPEIDVVAGTAIAAEAAMGEGRNLKT 248 L HP++ + G + EAA G + L+T Sbjct: 221 LTAHPDVKAIYG--MYDEAATGSAKALQT 247 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 65/296 (21%), Positives = 122/296 (41%), Gaps = 23/296 (7%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 K+ + K+ L S + +W ++ +EAA G++++V EA Q ++ Sbjct: 85 KSGQGEKIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTMV 144 Query: 100 QWGAEAILLG--SSTTSFPDL-QKQVASLPVIELVNAIDAP-------QVKSRVGVPWFQ 149 G +AI+L T P + A +PVI L +DA + ++ V + + Sbjct: 145 TMGFDAIILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKITVNFEE 204 Query: 150 MGYQPGRYLVQWAH--GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGD 206 G ++ GK V ++ G + AG S G + + V +V D Sbjct: 205 QGSTVANDMISRMEDGGK---VAILAGLEGAGQSVGRTNGAKTVFENTEGVELVAAQACD 261 Query: 207 NDIEIQRNLLQEMLERHPEIDVVAGT----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVY 262 D E +++L HP++ + A+AA A+ E N + V + + Sbjct: 262 WDTEKAYEATKDILTAHPDLKGIFACNDNMALAAVQALQEMGNKDVMVYGVDYTTDAKA- 320 Query: 263 RGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKN-ADRE 317 ++ G ++ + + + A E A+ +QG++ D V P+ ++T N AD E Sbjct: 321 -AIEDGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKDPVYLPLTLVTQDNVADFE 375 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 54/283 (19%), Positives = 113/283 (39%), Gaps = 20/283 (7%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD 117 +W S+ G ++A GV++ + +++ Q ++ A+ + + PD Sbjct: 51 FWRSVEAGAKKAGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALD---PD 107 Query: 118 LQKQV------ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLL 171 V A +PV+ + + S + G G L + +GK ++ Sbjct: 108 ALAVVAKKAMDAKIPVVTFDSNVKGDITSSFIATDNKVAGAMAGEQLAKLINGKGKVAIV 167 Query: 172 MPGPDNAGGSKEMVE---GFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEID 227 P G+ +E GFR A+A P ++I++ D D + +++ +P+I Sbjct: 168 SHNP----GTTTAIEREAGFREALAKYPDIKILNTQFSDGDKSKALAITLDIINANPDIA 223 Query: 228 VVAGT---AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGEL 284 + GT +I A E + L + +V S + + L++G + G Sbjct: 224 GIYGTNEPSIFGIAKGVEEKGLTGKVVLVGIDSSEDLAKFLEKGVISGLVIQDPYNMGYQ 283 Query: 285 AVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGG 327 V+Q + +G+ V + +++T +N + I + + P G Sbjct: 284 TVQQLYKLSKGEKVEKRIDTGAILVTKENINNPDITKKMFPFG 326 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 58/257 (22%), Positives = 112/257 (43%), Gaps = 13/257 (5%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG---SSTTS 114 ++++L G +E A++ G+ L ++A A Q A I+ Q + IL+ S Sbjct: 53 FFVTLKKGAEEEAQKQGLTLITVDA--QDDPAKQIASIEDLIQKKVKVILVNPTDSDAVV 110 Query: 115 FPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 A +PV+ L +++ +V S V G YL++ G +V+ + G Sbjct: 111 GAVKAANAAGIPVVTLDRSVNGGEVASHVASDNVAGGKMAAEYLLEKI-GNQGDVVELEG 169 Query: 175 PDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA 233 A ++E +GF I V++V D D ++++ +L+ + + V A Sbjct: 170 IPGASAARERGQGFHDVIDQAKDVKVVGRQPADFDRAKGLSVMENILQANKNVKGV--FA 227 Query: 234 IAAEAAMGEGRNLKTP----LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 E A+G + L+ +TVV F + +K G++ + + G+ AV+ A Sbjct: 228 HNDEMALGAVQALEAAGMKDVTVVGFDATDDAVNAVKAGKMSATVAQKPKLIGKTAVDAA 287 Query: 290 IRQLQGQSVSDNVSPPI 306 + + GQ V ++ P+ Sbjct: 288 KKIIDGQPVDKSLPVPL 304 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust. Identities = 60/274 (21%), Positives = 115/274 (41%), Gaps = 30/274 (10%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL-----GSST 112 +++ L GMQE A GV L + G LA Q Q++ G + I+L ++ Sbjct: 73 FYVDLEKGMQEVADAQGVKLITQDPNG--DLAAQTKQVEDFITQGVDGIVLCPIDSNAAV 130 Query: 113 TSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLM 172 T + + A +P++ A+ V S + +G Q + G V L+ Sbjct: 131 TEAETINQ--AGIPLVTTDIAVAGGDVASHIASDN-TLGGQLAAQFIGEQLGGTGKVALI 187 Query: 173 PGPDNAGGSKEMVE---GFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEID 227 P ++E GF +A + IV + G++ E ++++ +L+ +P++ Sbjct: 188 NNPT----ITSLIERETGFTDTMAQKYPDIEIVAVQSGESKREKGLSVMENILQSNPDVQ 243 Query: 228 VVAGTAIAAEAAMGEG------RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQM-VW 280 V A MG G + + +V F + + + +K G + A+ Q V Sbjct: 244 GV----FAVNDMMGLGALQAVQAAQRDDIVIVGFDATEEAVKYIKEGSALKASVAQNPVE 299 Query: 281 QGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 G+ +E ++ + G+ V N+ P+ ++T NA Sbjct: 300 LGKTTMETMLKVIAGEQVEKNIPVPVELVTAGNA 333 >UniRef50_C2BT70 Ribose ABC superfamily ATP binding cassette transporter, ribose-binding protein n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BT70_9ACTO Length = 333 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 71/302 (23%), Positives = 108/302 (35%), Gaps = 70/302 (23%) Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 L L P+ + Y++++ G ++ + G ++V Q A D Q Sbjct: 53 LAVLLPNQTNPYYVAMKEGFEDEGSKNGFKVEV-----------QIANDDDANQLAQAQA 101 Query: 107 LLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWF--QMGYQPGRYLVQWAHG 164 +LG + + V S P +V A + GVP F + P Q A Sbjct: 102 MLGKNPCAL--ALNPVKSEPAAAIVKAAN------DKGVPVFTVNISADPDALKAQGA-- 151 Query: 165 KPLNVLLMPGPDNAGGSKEMVE------------------------------GFRAAIAG 194 +V+ G DNA G +M E GF+ AIA Sbjct: 152 ---SVVQYLGADNAAGGAQMAEQIMKDLGADTAMEIGFVTEPDEVVVVERDEGFKKAIAK 208 Query: 195 SP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVV-AGTAIAA----EAAMGEGRNLKT 248 +P ++V G+ + N+ EML+ HP I V+ A T AA EA G+++K Sbjct: 209 NPNAKVVAEVDGNVKLTDALNVTSEMLQGHPGISVIFASTGPAAQGAVEAVKASGKDIK- 267 Query: 249 PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILV 308 V F S V D G V+Q + G V DN+ P+ + Sbjct: 268 ---VYGFCASEMQTNDAYPACVAQEPED----YGRRTVQQIKTYIGGDKVEDNILRPLKL 320 Query: 309 LT 310 T Sbjct: 321 FT 322 >UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1R8_ROSS1 Length = 334 Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 125 LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK---PLNVLLMPGPDNAGGS 181 +PVI L + Q +G +G + G Y +W + P V+ + G + + + Sbjct: 124 IPVIVLDRKVKGEQYTMWIGADNRLIGRKAGEYTARWCREQQRSPCTVIELRGLEGSTPT 183 Query: 182 KEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVV 229 +E +GFR IA +P VRI+ D E L + + E +P++DVV Sbjct: 184 QERGDGFREGIAANPDVRIIASQNADWLAERADALARVLFEANPDVDVV 232 >UniRef50_B5K960 ABC transporter, periplasmic sugar binding protein n=1 Tax=Octadecabacter antarcticus 238 RepID=B5K960_9RHOB Length = 254 Score = 42.4 bits (98), Expect = 0.027, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 149 QMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDND 208 Q GY G YL + G+ + ++ G A E +EGF+ A++ P + DND Sbjct: 83 QDGYDLGEYLAEELGGEG-TIAILSGSLTASDHVERIEGFKDALSQHPEMEIVFEQPDND 141 Query: 209 IEIQR-NLLQEMLERHPEIDVVAGT 232 I Q L + ML+ HP+ID + G+ Sbjct: 142 ILDQAITLTENMLQAHPDIDGIFGS 166 >UniRef50_P55568 Probable ABC transporter periplasmic-binding protein y4mI n=5 Tax=Rhizobiales RepID=Y4MI_RHISN Length = 324 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 19/210 (9%) Query: 50 LYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG 109 L PSL SYW + +G+++ A+ G+D +E + A Q G +AI++G Sbjct: 35 LAPSLDISYWQWVGFGVKQKAQELGMDY--VEFTSENSPAKQMDNARTAVTKGVDAIVIG 92 Query: 110 S-STTSFPDLQKQVASLPVIELVNAIDAPQ-----VKSRVGVPWFQMGYQPGRYLVQWAH 163 S+TS P L + S I + A PQ S V ++ G G ++ A Sbjct: 93 PVSSTSTPPLLAYLKSQN-IPIAFAGIGPQPGQTDYTSSVTANNYETGKAQGSFVCALAK 151 Query: 164 GKPLN-VLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDI----ALGDNDIEIQRNLLQE 218 + N V ++ P + +++ ++G + A A +V + L N+ Q N + Sbjct: 152 ERGGNKVGMLSLPQDRENAQKYLKGAQEAFAADGCELVQMLETRGLTVNEAVTQAN---D 208 Query: 219 MLERHPEIDVVAGTAIAAEAAMGEGRNLKT 248 ML HP+I + G + EA G + L+T Sbjct: 209 MLTAHPDIKAIYG--MYDEAGTGAAKVLET 236 >UniRef50_A6DTR7 Sugar (D-ribose) ABC transporter, periplasmic sugar-binding protein (Fragment) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTR7_9BACT Length = 236 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 13/176 (7%) Query: 57 SYWLSLNYGMQEAARRYGVD--LKVLEAGGYSQLATQQAQIDQCKQWGAEAILL--GSST 112 +WL G+++AA+ G++ KV G A Q+ +D G +A+ + ++ Sbjct: 49 DFWLYSQAGVKKAAKELGIEAEFKV----GDQTTAKQKQIVDDLIVSGVKAVAISPANAK 104 Query: 113 TSFPDLQKQVASLPVIELVNAIDAPQVK--SRVGVPWFQMGYQPGRYLVQWAHGKPLNVL 170 + + A +PVI DAP+ K + +G G Q G L Q A V+ Sbjct: 105 NQVQMINEWSAYIPVI--CADSDAPKSKRIAYLGTDNVAAGRQCGELLKQ-ALPDGGKVM 161 Query: 171 LMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEI 226 + G +A + E +G + AI G+ + I+D+ + D R ++ L HP+I Sbjct: 162 VFVGLRDAQNAIERFQGLKEAIEGTKIEILDLRTDNGDRVKARKNAEDALIAHPDI 217 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 10/116 (8%) Query: 118 LQKQVASLPVI----ELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP 173 LQ + A +P++ EL N VK + G G Y ++ G V+ + Sbjct: 106 LQVEEAGIPLVIVDRELTNDAATVVVKGD----NYGAGVNAGEYFMEQLGGNG-KVVEIA 160 Query: 174 GPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVV 229 GP N+ +++ +GFR AI GS + IV G+ E +++ +L PEID V Sbjct: 161 GPSNSV-TQQRSDGFREAIEGSDIEIVASQSGEFSTETSLQVMENILTSQPEIDAV 215 >UniRef50_Q89GL8 ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89GL8_BRAJA Length = 337 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 13/208 (6%) Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMG-YQPGRYLVQWAHGK--PLNVLLMPGP 175 Q Q A +PV++ VN A Q S VG W +MG + G A GK V+ + G Sbjct: 119 QAQEAGIPVLQ-VNMQSATQTDSYVGNDWIEMGRLEMGELAKACAKGKGPSTKVVWLAGV 177 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT-- 232 + + M +G +A +P +++V + D + R + +L++HP++ V G Sbjct: 178 ETGAANIYMRQGINEVLAANPDLQLVSDQAANYDSDKARQINATVLQQHPDLCGVMGIWD 237 Query: 233 AIAAEAAMGEGRNLKT-PLTVVSFYLSHQV-YRGLKRGRVIMAASDQMVWQGELAVEQAI 290 A KT +T+V+ Q +K+G + + + QGE+A Q Sbjct: 238 NAEVGAGAAVAAAGKTGQVTIVTNGAGSQTGCDSIKKGLLTVVYNFHADIQGEIAAGQIS 297 Query: 291 RQLQGQ----SVSDNVSPPILVLTPKNA 314 LQG +V D P+ + NA Sbjct: 298 ELLQGNRKAAAVKDVFFGPVTRVDKNNA 325 >UniRef50_D1PLY2 Putative periplasmic sugar-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLY2_9FIRM Length = 324 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 58/285 (20%), Positives = 114/285 (40%), Gaps = 24/285 (8%) Query: 45 WKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAE 104 +K+ + S +W ++ G + AA Y +DL + TQ I + + GA+ Sbjct: 34 YKVALVAKSTNTDFWKAVFVGAEAAATEYNMDLTIDGPETEEDYETQNRMIAEAVENGAQ 93 Query: 105 AILLGS--STTSFPDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW 161 A++ + + P +++ + ++ + +A++ V + +G + G +Q Sbjct: 94 ALVFSAIDFDANAPAIEEAADKGVKIVVIDSAVNTEDVATYIGTDNYSAGQMAAEAALQG 153 Query: 162 AHGK------PLNVLLMPGPDNAGGSKE-MVEGFRAAIAGSPVRIVDIALGDNDIEIQRN 214 G +V G D G+ + E RA I + + + + D Sbjct: 154 TEGTLKVGIVNYDVNSANGQDRERGAVDTFAESGRAEIVATIHTLAEASSAQEDT----- 208 Query: 215 LLQEMLERHPEIDVVAG----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRV 270 ++ML+ HPEI+ + T++ A A+ E +L+ L +V+F + L+ G V Sbjct: 209 --RKMLQDHPEINALLAFNEPTSVGAAQAV-EELHLQNALWMVAFDSNLVTIDALQTGVV 265 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQ--SVSDNVSPPILVLTPKN 313 G V+ A + L GQ V +V V+ +N Sbjct: 266 DALVIQNTYEMGYFGVQSAYKLLSGQRSEVEKHVDTATRVINREN 310 >UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L479_THERP Length = 357 Score = 41.6 bits (96), Expect = 0.041, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 13/139 (9%) Query: 185 VEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR 244 +EGF+ + G +++VD+ D+D++ ++ + ML HP+++ +A ++A + Sbjct: 216 IEGFKEGV-GPNIQVVDVQATDDDLQKGLSVSEAMLRAHPDLNGIA--CVSATGGPTLAQ 272 Query: 245 NLKTP--------LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQ 296 LK+P L +V+F + R ++ G + + V G L V+ A L G+ Sbjct: 273 VLKSPEFQDRIGKLVIVAFDDLEETKRAIQEGIIAATMVQRPVQMGVLTVQWAYDILTGK 332 Query: 297 SVS--DNVSPPILVLTPKN 313 + N+ + V+T +N Sbjct: 333 AKPPFKNIDTGVTVVTKEN 351 >UniRef50_C3JGG7 DNA-binding protein n=4 Tax=Actinomycetales RepID=C3JGG7_RHOER Length = 360 Score = 41.6 bits (96), Expect = 0.043, Method: Compositional matrix adjust. Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 9/144 (6%) Query: 93 AQIDQCKQWGAEAILLGSSTTSFPDLQKQV-----ASLPVIELVNAIDAPQVKSRVGVPW 147 + +D+ ++ G+ +++ + T P++ + A +PV+ LV + + + +G+ Sbjct: 129 STLDKIRRRGSHGVIVKAPDT--PEVVAAIDRLVAARIPVVTLVTDVAGSRRAAYIGIDN 186 Query: 148 FQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAA--IAGSPVRIVDIALG 205 G + QW + NVL+ G +E GFR+A ++ R++DI Sbjct: 187 RAAGATAAYLIDQWLGDREGNVLVSMSSGFFRGEEEREMGFRSAMRVSAPHRRLIDIPNS 246 Query: 206 DNDIEIQRNLLQEMLERHPEIDVV 229 D + R L++ LE P+I V Sbjct: 247 DGLDQTSRKLVRAALESDPQIRAV 270 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 41.6 bits (96), Expect = 0.043, Method: Compositional matrix adjust. Identities = 70/307 (22%), Positives = 126/307 (41%), Gaps = 46/307 (14%) Query: 37 TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 T +AK K+ L++ YW S G++ A G+++ + + Q ++QQ Q+ Sbjct: 32 TTFEAKDPLKIGYSVYDLQNPYWQSYAAGVRAGAEEAGIEVVIAD-----QKSSQQEQVS 86 Query: 97 QCKQWGAEAILLGSSTTSFPDLQKQVASLP-VIELVNAIDAPQVKSRVGVPWFQMG---- 151 L+ ++ Q ++LP I+ + P V + +G G Sbjct: 87 GSLD------LINQGISALIITPVQPSALPSTIDAAHGEKIPVVVADIGTEGDYDGYILS 140 Query: 152 --YQPGRYLVQWAHGKPLNVLLMPGPDNAG------GS---KEMVEGFRAAIAGSP-VRI 199 Y+ GR + K + PGP G GS +E V GF + I Sbjct: 141 NNYEGGRLAAEHVVEK---LGGTPGPHQVGVIELHAGSVVGEERVSGFVDRLGEEENFEI 197 Query: 200 VDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTP-------LTV 252 V G++ ++ Q+ML +PE+DV+ A ++A+G R ++T T+ Sbjct: 198 VSSLDGNDTVDGGFTAAQDMLSANPELDVI--YAANDDSAVGASRAMETAGVSVANGFTL 255 Query: 253 VSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQS--VSDNVSP----PI 306 + F S +++G + + QG+ AVE A+ L G+ SD + P+ Sbjct: 256 IGFDGSDPALDLIEQGVMSGTVAQDPFGQGQKAVETALALLNGEDPGYSDEATKTIYFPV 315 Query: 307 LVLTPKN 313 ++T +N Sbjct: 316 EMVTAEN 322 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 41.6 bits (96), Expect = 0.046, Method: Compositional matrix adjust. Identities = 59/272 (21%), Positives = 113/272 (41%), Gaps = 21/272 (7%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--F 115 ++ +N G Q+AA+ G DL + + Q I+ Q G + IL+ + + Sbjct: 46 FFNLMNKGAQDAAKASGKDLVIFNSN--DNPVAQNDAIENYIQQGVKGILVAAIDVNGIM 103 Query: 116 PDLQKQVAS-LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLN---VLL 171 P +++ A+ +PVI + + A ++VGV + G G+Y V + K + L Sbjct: 104 PAVKEAAAANIPVIAIDAVLPAGPQAAQVGVDNIEGGRIIGQYFVDYVQ-KEMGGQARLG 162 Query: 172 MPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA 230 + G N+ + +GF + +P + I ++ G N + + ++ +P++ + Sbjct: 163 IVGALNSAIQNQRQKGFEETLKSNPKITIANVVDGQNVQDKAMTAAENLITGNPDLTAIY 222 Query: 231 GT-------AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGE 283 T AIAA G +++K V + L+ + G+ G V G Sbjct: 223 ATGEPALLGAIAAVENQGRQKDIK----VFGWDLTAKAISGMDGGYVTAVLQQDPEKMGA 278 Query: 284 LAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 A+ G++V + P V+T N D Sbjct: 279 EALNALNSITSGKTVPKTILVPATVVTKANVD 310 >UniRef50_B8CZL4 ABC-type sugar transport system, periplasmic component n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZL4_HALOH Length = 318 Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 6/93 (6%) Query: 143 VGVPWFQMGYQPGRYLVQWAHGKPLN-----VLLMPGPDNAGGSKEMVEGFRAAIAGS-P 196 VG ++ GY+ G+ L+Q K + V+++ G A K+ V+GF A+ Sbjct: 122 VGTDNWRAGYELGKALLQVLKRKGIKTEKYKVMVLSGGKEALNLKKRVKGFAKAVEEEID 181 Query: 197 VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVV 229 + I DI ++D ++ L++ ++ HP+ID++ Sbjct: 182 IEIKDILYCNDDFQLANELVENYIKSHPDIDII 214 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust. Identities = 60/273 (21%), Positives = 116/273 (42%), Gaps = 14/273 (5%) Query: 53 SLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL---LG 109 +L+ ++ + + A++ G+ + V +A G + ATQ QI AI+ G Sbjct: 49 NLQADFFNQIKQSVTAEAKKKGIKVIVSDARGDA--ATQVNQIQDFISRQVSAIIYIPAG 106 Query: 110 SSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNV 169 ++ P A +PV+ + KS + G Y+V+ + GK + Sbjct: 107 ATAAGVPVKAANRAKIPVVTVDRNPPGEPGKSFIASDSVAAARTLGNYVVKESGGKG-QL 165 Query: 170 LLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDV 228 ++ G + +GF A+ +P +++V D + ++ Q+ML+ HP ID+ Sbjct: 166 AILQGQIGTTPQVDRQKGFGQALKNAPGIKVVSQQPADWAQDKAYSVSQDMLQAHPGIDI 225 Query: 229 VAGTAIAAEAAMGEGRNLKTPLT-----VVSFYLSHQVYRGLKRGRVIMAASDQMVWQGE 283 + G A A A+G + +K + +V F + ++RG V Q G Sbjct: 226 LWGQADA--MALGAAQAVKASGSKKKHLIVGFDGDIAGLKAVRRGTVDATMVQQTRKMGR 283 Query: 284 LAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 ++V A+ ++G+ V P +LT K+ + Sbjct: 284 MSVNTAVDIIKGKKVPAQQLQPAFLLTSKDKKK 316 >UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUV0_PEDHD Length = 343 Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust. Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 32/294 (10%) Query: 52 PSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG-- 109 PS+ Y+++L ++ + +RYG ++ A G +A Q A I+ G + ++L Sbjct: 59 PSMVAPYYVALEDVVKRSVQRYG--MQYYTADGQEDVAKQVAAIEDLLSKGIQVLVLNPL 116 Query: 110 SSTTSFPDLQKQVASLPVIELVNA-IDAPQVKSRVGVPWFQMGYQPGRYLVQW---AHGK 165 P + + +A V+ +V++ ID + V + G L W + Sbjct: 117 DPKAVVPVVNRAIAEGVVVFIVDSMIDEKAAYTSSVVANNTLN---GELLGLWLAETKNE 173 Query: 166 PLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQR----------NL 215 L + ++ G +E GF +A +R A + DI Q Sbjct: 174 ALKIAIISGNQGNPVGREKRLGFVRGLADGQLR--QNAKTNFDIVAQGWGGWNNNGGLKA 231 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRV 270 ++++L HP ++V+ A A+G + +K +T++ F + + LK G+ Sbjct: 232 MEDILAAHPYVNVLLAENDA--MALGAYKIIKQMGKENQITILGFDGQKEAFDMLKTGKF 289 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSD-NVSPPILVLTPKNADREHIRRSL 323 A + GE +E R L G+ V+ N +P +L+ + KN D + ++L Sbjct: 290 EATAQNSPKILGETIIELVARHLNGEKVNKLNYTPSVLI-SKKNVDEYYDAKAL 342 >UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Firmicutes RepID=C8WV69_ALIAD Length = 349 Score = 41.2 bits (95), Expect = 0.056, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 95/240 (39%), Gaps = 28/240 (11%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGY--SQLATQQAQIDQCKQWGAEAILLGSSTTSF 115 YW GMQ AA+ GV A Y +Q T Q+ G + + + Sbjct: 69 YWKGCFAGMQAAAKDLGVKAVFTGAPQYDINQEVTTMQQVIAKHPAGILVTSINAQAMTP 128 Query: 116 PDLQKQVASLPVIELVNAIDAPQVK--SRVGVPWFQMGYQPGRYLVQ--WAHGKPLNVLL 171 Q A +PVI + DAPQ K + +G + G + YL Q HG+ + V+ Sbjct: 129 VINQAIAAGIPVISFDS--DAPQSKRYAYLGTSNIEAGQKAADYLGQALGGHGE-VAVIT 185 Query: 172 MPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHP----- 224 PG N + V+GF+ +A V++V + G++D + +L+ +P Sbjct: 186 TPGELNL---DQRVQGFKDEMAAKYPGVKVVAVQNGNSDQIKTAQVTSALLQTYPNLAGI 242 Query: 225 ---EIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQ 281 E D G A A + A G + +VSF +K G+ I A Q W Sbjct: 243 FCTEADEGTGAATAVQEAGKTGT-----VKIVSFDTDKATLNAIKSGQ-ITATVAQGTWN 296 >UniRef50_Q7NV24 Probable ribose ABC transporter, substrate binding protein n=1 Tax=Chromobacterium violaceum RepID=Q7NV24_CHRVO Length = 330 Score = 41.2 bits (95), Expect = 0.056, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 61/144 (42%), Gaps = 13/144 (9%) Query: 182 KEMVEGFRAAI--AGSPVRIVDIALGDNDIEIQRNLLQEMLERHP-------EIDVVAGT 232 ++ GFR A+ AG P IV + D E ++EML HP E D Sbjct: 176 QDRTNGFRDAMKDAGFPREIVLRQMKDYSAEETYRYVKEMLAAHPGLRGFFIETDQPVAG 235 Query: 233 AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 A+ A G+ + L +VSF V R LK G ++ Q G A + + Sbjct: 236 ALRAIREAGKEKQL----LLVSFDAMPDVVRLLKSGALVAVGMQQPYLMGSSAAGALVSR 291 Query: 293 LQGQSVSDNVSPPILVLTPKNADR 316 L+G + + P+LV T +N D+ Sbjct: 292 LRGHPPAKEILVPVLVATGRNVDQ 315 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 41.2 bits (95), Expect = 0.059, Method: Compositional matrix adjust. Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 14/269 (5%) Query: 56 DSYWLSLNYGMQEAARRY--GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT 113 D+Y L MQE AR+ GV L+V ++G S + Q Q++ +AI++ + T Sbjct: 43 DNYIAYLVRAMQERARQVPGGVTLQVEDSG--SDVVRQLGQVESFIAQQVDAIIVNPADT 100 Query: 114 SFPDLQKQVASLPVIELVNAIDAPQVKSR------VGVPWFQMGYQPGRYLVQWAHGKPL 167 + + A+ I LV P+V+ VG ++G YL + GK Sbjct: 101 AATGGITERATRAGIPLVYLNSRPEVREFPAGVVFVGTDERRLGQMQMEYLAEKMGGKG- 159 Query: 168 NVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEI 226 ++ ++ G +++ G + +A P +R+V+ GD + +L L E Sbjct: 160 DLAILLGRLAHDDTRKRTAGVKDVLARYPQIRVVEEQSGDWQRDKGLDLTNNWLSSGREF 219 Query: 227 DVVAGT--AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGEL 284 D V + AAM + + ++V + + RG++ + V GE Sbjct: 220 DAVVANNDEMGIGAAMALRQAGRREVSVGGIDGTPDGLAAIARGQLAVTLLRDPVAMGEE 279 Query: 285 AVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 AV+ A+R ++ V +V P+ ++TP N Sbjct: 280 AVDVALRLVRKDVVQGDVWIPVHLITPDN 308 >UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z738_9FIRM Length = 369 Score = 40.8 bits (94), Expect = 0.073, Method: Compositional matrix adjust. Identities = 63/303 (20%), Positives = 117/303 (38%), Gaps = 39/303 (12%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAAR---RYGVD--LKVLEAGGYSQLATQQA 93 +K K K+ A+ S + +W + G +++ + GVD +K+ S QQ Sbjct: 67 VKVKGGLKMGAIAKSFSNEFWRNFKNGYEQSEKVLKDAGVDVSIKIDGTTDESDEIGQQT 126 Query: 94 QIDQCKQWGAEAILLG----SSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQ 149 D G A++L S+ T+ D K +P I + + + A +F Sbjct: 127 MTDNLVNQGYNALMLSPISDSNLTASVDNAKG-KKIPTINVNDGLIAS-------ADYFV 178 Query: 150 --MGYQPGRYLVQWAH---GKPLNVLLMPGPDNAGGSKEMVEGFRAAIA--GSPVRIVDI 202 YQ G +W G +V ++ G A ++E GF+ I S + +V Sbjct: 179 GPDAYQNGELAAEWVSKQLGDKGDVAIVIGMAKAFAARERTAGFKGWIKDNNSGLNVVAE 238 Query: 203 ALGDNDIEIQRNLLQEMLERHPEI--------DVVAGTAIAAEAAMGEGRNLKTPLTVVS 254 D D + + L ++++P++ D+ G A E A K + VV Sbjct: 239 QNADWDRQKAKELASTWIQQNPDLKAIFCNNDDMALGVVEAVEEA-------KKDILVVG 291 Query: 255 FYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 + Y ++ G++ + ++A E +R L GQ + P ++ N Sbjct: 292 VDGIGEAYDSIRAGKLDATVDSFGYYMSQVATEVTLRVLAGQDIPRVTHTPQALIDKTNV 351 Query: 315 DRE 317 D++ Sbjct: 352 DKD 354 >UniRef50_C3KLX6 Putative transcriptional regulatory protein, LacI family n=2 Tax=Rhizobium sp. NGR234 RepID=C3KLX6_RHISN Length = 346 Score = 40.8 bits (94), Expect = 0.074, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 9/156 (5%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI-DQ 97 L+ R+ + L P + + + +++A + YG+ + + A S+ A QQ ++ Sbjct: 76 LRLARSRVVVMLVPDATNPFTADVAASVEQALKEYGLSMVLANA---SENAEQQDRLLAD 132 Query: 98 CKQWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQ-VKSRVGVPWFQMGYQPGR 156 + A AI+L + + P L+ + + VN AP V VG+ F G+ G+ Sbjct: 133 AQGLRARAIVLQGAIDT-PRLRDMASRQDNLIFVNRRPAPGIVAPYVGIDNFAAGFAVGK 191 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI 192 Y V + N + + GP + GS E ++GF A + Sbjct: 192 YFVDRGYE---NYVAIHGPRHYSGSTERLDGFLAGL 224 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 40.4 bits (93), Expect = 0.085, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 23/182 (12%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEA--------GGYSQLATQQAQ---IDQCKQWGAEAI 106 +++ + G+Q+AA +G++L + +A L T++ ID C ++AI Sbjct: 79 FFVDVKDGVQKAADEHGIELYITDAQDDPTIQMKDVENLITKKPDAIIIDTCD---SDAI 135 Query: 107 LLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKP 166 + SS + + A +PV + + +V S +G + G G+YLV GK Sbjct: 136 V--SSIEACNE-----AGIPVFTMDREANGGEVISHIGYDAIKSGRMAGQYLVDTLGGKG 188 Query: 167 LNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPE 225 ++ + G ++ +GF + +P + IV + D D ++++ +L+ +PE Sbjct: 189 -KIVEIQGIMGTNVAQNRSQGFNEVMKDNPDMEIVACQVADFDRAKGMSVMENILQANPE 247 Query: 226 ID 227 ID Sbjct: 248 ID 249 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust. Identities = 70/316 (22%), Positives = 133/316 (42%), Gaps = 26/316 (8%) Query: 1 MRVLLFLLLSLFMLPAFSA---------DNLLRWHDAQHFTVQASTPLKAKRAWKLCALY 51 M+ L+ +L++ ML F+A + D T + S P K + LY Sbjct: 4 MKRLVAMLVAAIMLITFAACSSDTSKNSSEESKSSDTTKVT-ETSKPADKKIVVGMT-LY 61 Query: 52 PSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG-- 109 SLK+ + + L+ ++ A GV+LK+ + G Y TQ Q++ G +AI+L Sbjct: 62 -SLKNEFTVRLSNAAKKKAAELGVELKIYD-GNYDP-NTQINQVETMISDGVDAIILNPQ 118 Query: 110 -SSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLN 168 + + + A++PVI + +D+ ++ S VG G + + GK N Sbjct: 119 DAKACAVAVDKAAAANIPVIGVNTRVDSEKLTSYVGSKDVYAGELEMQAIADKIGGKG-N 177 Query: 169 VLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEID 227 ++++ GP E EG + + P ++++ + +++ L+ +ID Sbjct: 178 IVILDGPLGQSAQLERSEGIQNVLKKYPDIKVLAEKTANWSRSEAMTVMENWLQAFDKID 237 Query: 228 VVAGT----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGE 283 V A+ A A+ E + L P V +++G +I QG Sbjct: 238 AVVAENDEMALGARKAI-EAKKLDIPTIGVDGI--TDALDAVEKGTLIATIFQDGAGQGS 294 Query: 284 LAVEQAIRQLQGQSVS 299 A+E A+ + +G++V Sbjct: 295 KALEIAVAKAKGENVD 310 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P38683 Periplasmic protein torT n=101 Tax=Bacteria RepI... 459 e-128 UniRef50_UPI000197BE16 TMAO reductase system periplasmic protein... 390 e-107 UniRef50_B6QZG8 TMAO reductase system periplasmic protein TorT n... 296 7e-79 UniRef50_A3JZ93 Periplasmic sensory protein associated with the ... 293 7e-78 UniRef50_Q7MEN8 ABC-type sugar transport system, periplasmic com... 289 1e-76 UniRef50_Q1GM88 Periplasmic binding protein/LacI transcriptional... 286 7e-76 UniRef50_C3M5M3 Periplasmic protein TorT n=33 Tax=Vibrio RepID=C... 286 1e-75 UniRef50_Q484F8 Periplasmic protein TorT n=2 Tax=Alteromonadales... 282 9e-75 UniRef50_B8IKX9 Periplasmic binding protein/LacI transcriptional... 279 9e-74 UniRef50_A6FN89 Periplasmic binding protein/LacI transcriptional... 275 2e-72 UniRef50_A3QGS0 TonB box domain protein n=16 Tax=Shewanella RepI... 269 1e-70 UniRef50_C4ZP40 Periplasmic binding protein/LacI transcriptional... 266 8e-70 UniRef50_B9L4R0 Periplasmic binding protein/LacI transcriptional... 258 2e-67 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 255 2e-66 UniRef50_A9D600 Periplasmic protein TorT n=1 Tax=Shewanella bent... 246 9e-64 UniRef50_Q162F2 Periplasmic protein TorT n=3 Tax=Rhodobacteracea... 241 3e-62 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 237 4e-61 UniRef50_A9AX43 Periplasmic binding protein/LacI transcriptional... 237 4e-61 UniRef50_C5V4K8 Periplasmic binding protein/LacI transcriptional... 237 5e-61 UniRef50_A6M1W5 Periplasmic binding protein/LacI transcriptional... 229 1e-58 UniRef50_A1S2M5 Periplasmic binding protein/LacI transcriptional... 229 1e-58 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 224 5e-57 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 223 1e-56 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 221 2e-56 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 221 2e-56 UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminoc... 221 4e-56 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 216 7e-55 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 215 2e-54 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 214 3e-54 UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional... 214 5e-54 UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerot... 210 7e-53 UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostri... 209 1e-52 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 209 2e-52 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 208 2e-52 UniRef50_C6CXU6 Periplasmic binding protein/LacI transcriptional... 208 2e-52 UniRef50_A9KK42 Periplasmic binding protein/LacI transcriptional... 203 9e-51 UniRef50_A4IT20 ABC transporter sugar-binding protein n=9 Tax=Ba... 201 2e-50 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 201 4e-50 UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional... 200 6e-50 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 199 1e-49 UniRef50_C8STD2 Monosaccharide-transporting ATPase n=1 Tax=Mesor... 198 3e-49 UniRef50_A1FB23 Tmao reductase system periplasmic protein tort (... 197 3e-49 UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic com... 196 1e-48 UniRef50_C6J068 ABC-type sugar transport system n=1 Tax=Paenibac... 196 1e-48 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 196 1e-48 UniRef50_C5RJT9 Periplasmic binding protein/LacI transcriptional... 196 1e-48 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 192 1e-47 UniRef50_UPI0001973330 periplasmic binding protein/LacI transcri... 189 1e-46 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 189 2e-46 UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei... 188 2e-46 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 188 3e-46 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 188 3e-46 UniRef50_A6BDJ9 Putative uncharacterized protein n=1 Tax=Dorea l... 188 3e-46 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 187 6e-46 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 186 1e-45 UniRef50_B7DPH3 Periplasmic binding protein/LacI transcriptional... 185 2e-45 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 183 6e-45 UniRef50_B0NFD0 Putative uncharacterized protein n=1 Tax=Clostri... 180 8e-44 UniRef50_A4F0B1 Periplasmic sensory protein associated with the ... 174 5e-42 UniRef50_Q7WIY8 Putative sugar ABC transport system, substrate-b... 173 6e-42 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 173 9e-42 UniRef50_C3JFS7 ABC transporter, nucleotide binding/ATPase prote... 171 3e-41 UniRef50_Q89SY1 ABC transporter sugar-binding protein n=4 Tax=Rh... 169 2e-40 UniRef50_B5WB27 Periplasmic binding protein/LacI transcriptional... 168 3e-40 UniRef50_C0RMD7 Rhizopine-binding protein n=23 Tax=Brucella RepI... 162 2e-38 UniRef50_A6M1U2 Periplasmic binding protein/LacI transcriptional... 160 6e-38 UniRef50_A7VYE8 Putative uncharacterized protein n=1 Tax=Clostri... 154 4e-36 UniRef50_UPI0001C3100C periplasmic binding protein/LacI transcri... 147 5e-34 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 146 1e-33 UniRef50_Q6W1J5 Putative RbsB, ABC-type sugar transport system, ... 146 1e-33 Sequences not found previously or not previously below threshold: UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 221 3e-56 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 220 6e-56 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 213 6e-54 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 209 9e-53 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 207 4e-52 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 199 8e-50 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 199 1e-49 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 198 2e-49 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 198 3e-49 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 197 3e-49 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 197 5e-49 UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional... 194 3e-48 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 194 4e-48 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 194 5e-48 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 188 2e-46 UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional... 187 5e-46 UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T... 185 2e-45 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 184 3e-45 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 184 5e-45 UniRef50_A9KIC5 Periplasmic binding protein/LacI transcriptional... 184 5e-45 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 183 7e-45 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 182 2e-44 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 182 2e-44 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 182 2e-44 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 180 7e-44 UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional... 178 2e-43 UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional... 178 3e-43 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 177 4e-43 UniRef50_D1PLY2 Putative periplasmic sugar-binding protein n=1 T... 177 4e-43 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 177 4e-43 UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Ga... 177 6e-43 UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional... 176 1e-42 UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional... 175 2e-42 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 175 3e-42 UniRef50_C6CWF6 Periplasmic binding protein/LacI transcriptional... 175 3e-42 UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str... 173 6e-42 UniRef50_C0Z4C9 Putative ABC transporter substrate binding prote... 173 7e-42 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 173 7e-42 UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional... 172 1e-41 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 172 1e-41 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 172 2e-41 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 170 6e-41 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 170 6e-41 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 169 9e-41 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 169 9e-41 UniRef50_Q9K692 Sugar ABC transporter (Sugar-binding protein) n=... 169 1e-40 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 169 1e-40 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 169 1e-40 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 169 1e-40 UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Ta... 169 2e-40 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 168 2e-40 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 168 3e-40 UniRef50_C2KRR4 Ribose ABC superfamily ATP binding cassette tran... 168 3e-40 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 168 3e-40 UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia... 167 4e-40 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 167 5e-40 UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact... 167 6e-40 UniRef50_C0BEZ3 Putative uncharacterized protein n=1 Tax=Coproco... 167 7e-40 UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot... 167 7e-40 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 167 7e-40 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 166 2e-39 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 165 2e-39 UniRef50_Q221W3 Periplasmic binding protein/LacI transcriptional... 165 2e-39 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 165 3e-39 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 165 3e-39 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 164 5e-39 UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional... 164 6e-39 UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HL... 163 9e-39 UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional... 163 9e-39 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 163 1e-38 UniRef50_D2BFJ9 Sugar ABC transporter n=1 Tax=Streptosporangium ... 162 2e-38 UniRef50_A1STY3 Transcriptional regulator, periplasmic binding p... 162 2e-38 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 161 4e-38 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 161 4e-38 UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding prot... 161 5e-38 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 160 6e-38 UniRef50_A9KMR5 Putative solute-binding component of ABC transpo... 160 6e-38 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 160 6e-38 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 160 6e-38 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 159 1e-37 UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri... 159 2e-37 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 159 2e-37 UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding... 158 3e-37 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 158 3e-37 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 158 3e-37 UniRef50_C5EI71 Predicted protein n=1 Tax=Clostridiales bacteriu... 158 3e-37 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 158 3e-37 UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia... 157 4e-37 UniRef50_C6BZX1 Putative D-ribose-binding periplasmic protein n=... 157 4e-37 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 157 4e-37 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 157 4e-37 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 157 6e-37 UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu... 157 7e-37 UniRef50_B8CZL4 ABC-type sugar transport system, periplasmic com... 156 1e-36 UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein ... 156 1e-36 UniRef50_B5ZRZ8 Periplasmic binding protein/LacI transcriptional... 156 1e-36 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 156 1e-36 UniRef50_C8XH32 Periplasmic binding protein/LacI transcriptional... 155 1e-36 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 155 2e-36 UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 155 2e-36 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 155 2e-36 UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph... 154 4e-36 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 154 4e-36 UniRef50_C3RC01 ABC-type sugar transport system n=5 Tax=Bacteroi... 154 4e-36 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 154 4e-36 UniRef50_Q1AUT8 Periplasmic binding protein/LacI transcriptional... 154 4e-36 UniRef50_A9GIG1 ABC-type sugar transport system, periplasmic com... 154 4e-36 UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi... 154 5e-36 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 154 6e-36 UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clo... 154 6e-36 UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional... 154 6e-36 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 154 6e-36 UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curviba... 153 7e-36 UniRef50_C9NQR7 Periplasmic binding protein/LacI transcriptional... 153 8e-36 UniRef50_UPI0001B55A58 periplasmic binding protein/LacI transcri... 153 1e-35 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 152 1e-35 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 152 1e-35 UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional... 152 2e-35 UniRef50_A4XG54 Periplasmic binding protein/LacI transcriptional... 152 2e-35 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 152 2e-35 UniRef50_A8F3L8 Periplasmic binding protein/LacI transcriptional... 152 2e-35 UniRef50_B9K0T2 ABC transporter substrate binding protein (Ribos... 152 2e-35 UniRef50_B0MFL8 Putative uncharacterized protein n=1 Tax=Anaeros... 152 2e-35 UniRef50_C6D7S4 Periplasmic binding protein/LacI transcriptional... 151 3e-35 UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional... 151 3e-35 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 151 4e-35 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 150 5e-35 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 150 5e-35 UniRef50_A8RPD9 Putative uncharacterized protein n=1 Tax=Clostri... 150 6e-35 UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding ... 150 6e-35 UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding... 150 7e-35 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 150 7e-35 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 150 8e-35 UniRef50_A7NNR8 Anti-sigma-factor antagonist n=2 Tax=Roseiflexus... 149 1e-34 UniRef50_C6PMK8 Periplasmic binding protein/LacI transcriptional... 149 1e-34 UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Di... 149 2e-34 UniRef50_A1TUU8 Periplasmic binding protein/LacI transcriptional... 149 2e-34 UniRef50_A5FY95 Periplasmic binding protein/LacI transcriptional... 149 2e-34 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 148 2e-34 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 148 3e-34 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 148 3e-34 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 148 3e-34 UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional... 148 3e-34 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 148 3e-34 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 148 3e-34 UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminoc... 147 4e-34 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 147 4e-34 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 147 4e-34 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 147 4e-34 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 147 4e-34 UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional... 147 5e-34 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 147 5e-34 UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional... 147 6e-34 UniRef50_A6LW07 Periplasmic binding protein/LacI transcriptional... 147 8e-34 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 147 8e-34 UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribo... 146 1e-33 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 146 1e-33 UniRef50_A4FMX8 Ribose ABC transporter binding protein n=2 Tax=P... 145 2e-33 UniRef50_A8FI27 Sugar ABC superfamily ATP binding cassette trans... 145 2e-33 UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotro... 145 2e-33 UniRef50_A6TS00 Periplasmic sugar-binding protein n=1 Tax=Alkali... 145 2e-33 UniRef50_B0K232 Periplasmic binding protein/LacI transcriptional... 145 2e-33 UniRef50_C1D5Z3 RbsB protein n=1 Tax=Laribacter hongkongensis HL... 145 2e-33 UniRef50_Q2S7D2 ABC-type sugar transport system, periplasmic com... 145 3e-33 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 145 3e-33 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 145 3e-33 UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales b... 144 3e-33 UniRef50_A3DCF2 Sugar ABC transporter (Sugar-binding protein) n=... 144 3e-33 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 144 4e-33 UniRef50_Q7MCP2 ABC-type sugar transport system, periplasmic com... 144 4e-33 UniRef50_C6CRC9 Sugar ABC transporter (Sugar-binding protein) n=... 144 4e-33 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 144 6e-33 UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional... 144 6e-33 UniRef50_C2L154 Ribose ABC superfamily ATP binding cassette tran... 144 6e-33 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 143 7e-33 UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 143 7e-33 UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional... 143 7e-33 UniRef50_Q2YI92 Putative two-component system sensor histidine k... 143 8e-33 UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostri... 143 9e-33 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 143 9e-33 >UniRef50_P38683 Periplasmic protein torT n=101 Tax=Bacteria RepID=TORT_ECOLI Length = 342 Score = 459 bits (1180), Expect = e-128, Method: Composition-based stats. Identities = 342/342 (100%), Positives = 342/342 (100%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL Sbjct: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK 120 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK Sbjct: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK 120 Query: 121 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG 180 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG Sbjct: 121 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG 180 Query: 181 SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM Sbjct: 181 SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 Query: 241 GEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD 300 GEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD Sbjct: 241 GEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD 300 Query: 301 NVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK 342 NVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK Sbjct: 301 NVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK 342 >UniRef50_UPI000197BE16 TMAO reductase system periplasmic protein TorT n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BE16 Length = 343 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 247/345 (71%), Positives = 285/345 (82%), Gaps = 5/345 (1%) Query: 1 MRVLLFLLL---SLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDS 57 MRVL+ LL SL L +L++W D HF Q P+ A +AWKLCALYPSLKDS Sbjct: 1 MRVLILLLFTFHSLLSLATAHNSSLIQWSDTLHFDRQPHDPVTATKAWKLCALYPSLKDS 60 Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD 117 YWLS+NYGMQ+AA+ YGV+L VLEAGGY+QLATQQ QI QC+QWGA+AILLGSSTT+FP+ Sbjct: 61 YWLSINYGMQKAAKHYGVNLNVLEAGGYNQLATQQKQITQCQQWGADAILLGSSTTTFPN 120 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 L + V + PVIE++NA +K+RVGVPWFQMGYQPGRYLVQW+ GKPL VLLMPGP N Sbjct: 121 LSQLVENTPVIEVINATHDKTIKTRVGVPWFQMGYQPGRYLVQWSQGKPLKVLLMPGPLN 180 Query: 178 AGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 AGGS EM +GFR AIAGS V+IVD+A GDND+E+QRNLL EMLER+P+ DVV GTAIAAE Sbjct: 181 AGGSHEMEQGFREAIAGSQVQIVDVAQGDNDLEVQRNLLHEMLERNPDTDVVVGTAIAAE 240 Query: 238 AAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQS 297 AAMGEGRNL PL +VSFYLSHQVYRGLKRGR+IMAASDQMVWQGEL +EQAI+ LQ Q Sbjct: 241 AAMGEGRNLTKPLNIVSFYLSHQVYRGLKRGRIIMAASDQMVWQGELVIEQAIKVLQKQP 300 Query: 298 VSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK 342 V +N+SPPILVLT +NAD EH+R SLSPGGFRPVY Q+TSAAKK Sbjct: 301 VPNNISPPILVLTQQNADSEHLRNSLSPGGFRPVY--QYTSAAKK 343 >UniRef50_B6QZG8 TMAO reductase system periplasmic protein TorT n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QZG8_9RHOB Length = 368 Score = 296 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 123/353 (34%), Positives = 195/353 (55%), Gaps = 13/353 (3%) Query: 2 RVLLFLLLSLFMLPAFSADN--LLRWHDAQHFTVQAST----PLK-AKRAWKLCALYPSL 54 ++L+ L+ +F+ A+ + W FT + PLK A++AW +CALYP L Sbjct: 12 KILMAALVGVFLTGYAHAETWSAVTWEKLLDFTSPRKSISYEPLKQAEKAWSICALYPHL 71 Query: 55 KDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST-- 112 KDSYWLS+NYGM + A++ ++L+V EAGGY QL Q+ Q+ C +AILLG+ + Sbjct: 72 KDSYWLSVNYGMVKQAKKLNINLRVYEAGGYYQLEQQRKQLQACADSKPDAILLGTVSFE 131 Query: 113 TSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW--AHGKPLNVL 170 L++ V PVI LVN I + + + V W +MG + + + + A +NV Sbjct: 132 GHHDLLEEIVKDTPVIALVNNIRSDFIAAATSVDWDEMGRRTAQVITKRHPAGTASVNVS 191 Query: 171 LMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA 230 PG G S + F++ + S +++ GD IQ +L++E LE D + Sbjct: 192 WFPGAGKPGISSTKLSAFKSELTKSSANLLNTRYGDTGKLIQLSLIEEELEGGTAPDYLI 251 Query: 231 GTAIAAEAAMGE--GRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 GT ++AEAA+G R L + VVS YL+H V+RG+KRG++I + +DQ V QG +A++Q Sbjct: 252 GTGVSAEAAIGALKVRGLSEDIEVVSGYLTHGVFRGIKRGKIIASPTDQPVMQGMMAIDQ 311 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAK 341 +IR L+G+ + +P IL++T + + +LSP F P Y + A+ Sbjct: 312 SIRLLEGKPYLKHYAPEILMVTKDSIAEIDLECALSPASFSPTYTVEAQRNAE 364 >UniRef50_A3JZ93 Periplasmic sensory protein associated with the TorRS two-component regulatory system n=1 Tax=Sagittula stellata E-37 RepID=A3JZ93_9RHOB Length = 327 Score = 293 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 113/326 (34%), Positives = 170/326 (52%), Gaps = 11/326 (3%) Query: 21 NLLRWHDAQHFTVQAS----TPL-KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGV 75 L W + +F Q + TPL KA++ WKLC ++P LKD YW++ NYG+ AR GV Sbjct: 2 TLTSWGEHFNFDSQTTALDYTPLSKAEKKWKLCVVFPHLKDPYWVATNYGVVSHARSLGV 61 Query: 76 DLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS--TTSFPDLQKQVASLPVIELVNA 133 + + EAGGY L Q+ + C +AILLG+ + + S+PV VNA Sbjct: 62 AVDLFEAGGYDHLEEQKKLVKDCAAADYDAILLGTVSYDQMTETVTEAAQSVPVFATVNA 121 Query: 134 IDAPQVKSRVGVPWFQMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVEGFRAA 191 I + V V W MG G+Y V G V +PGP+ AG GFR Sbjct: 122 IQGDGITGMVAVDWHDMGRAAGQYFVDNYPQGGDAPTVAWLPGPEAAGWVTFTDAGFREV 181 Query: 192 IAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGE--GRNLKTP 249 + S I + GD + QR L++E L+ +P++D +AG A+A EAAMG R L Sbjct: 182 MQNSAAEISAVYYGDTGADFQRALVEEALDANPDLDYIAGNAVAIEAAMGVLRQRGLTDQ 241 Query: 250 LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVL 309 + +V+ Y + +YRG++RG + A +D QG L+V+QA+R L+G+ ++ P I + Sbjct: 242 VGLVADYFTPAMYRGVRRGIISSAPTDSAALQGTLSVDQAVRHLEGKETPGHIGPVIFSV 301 Query: 310 TPKNADREHIRRSLSPGGFRPVYFYQ 335 T +N+ + +SL+P F P + Sbjct: 302 TKENSSTFPVDQSLAPADFNPTFKVD 327 >UniRef50_Q7MEN8 ABC-type sugar transport system, periplasmic component n=29 Tax=Vibrionales RepID=Q7MEN8_VIBVY Length = 337 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 136/315 (43%), Positives = 195/315 (61%), Gaps = 14/315 (4%) Query: 36 STPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI 95 STP+ A A KLCA+YP LKDSYWLS+NYGM A + V+L+VLEAGGY A QQ Q+ Sbjct: 25 STPVYA--AEKLCAIYPHLKDSYWLSVNYGMVSEAEKQKVNLRVLEAGGYPNTAKQQQQL 82 Query: 96 DQCKQWGAEAILLGSSTTSF--PDLQKQVASLPVIELVNAI-----DAPQVKSRVGVPWF 148 C +WGA+AILLG+ +LQ+ S+P+ VN + + +K VGV W+ Sbjct: 83 MLCSKWGADAILLGTVDPMAFNENLQQWTGSIPIFATVNQLVLNETQSKNLKGTVGVDWY 142 Query: 149 QMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGD 206 MG+Q G YL Q A NV+L+ GP ++GG+K + +GFR AI GS + I++ D Sbjct: 143 WMGHQAGHYLAQKHPAGSGTKNVVLLLGPKSSGGTKPVDKGFRDAIKGSDIHIMESFWAD 202 Query: 207 NDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR--NLKTPLTVVSFYLSHQVYRG 264 ND E+QRNL+Q+ ++ P++D + G+A+A EAA+ E R N + ++S YLSH +YRG Sbjct: 203 NDKELQRNLVQQAIDT-PDVDYLVGSAVAMEAAISELRSANKTGQIGLISTYLSHGIYRG 261 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 L R ++ A +DQMV QG L+V+QA+ L+ + + SP I LTP + I SLS Sbjct: 262 LLRNKIEFAPTDQMVLQGRLSVDQAVNYLRHKPYQIHSSPTIEPLTPNTLNFSTIEDSLS 321 Query: 325 PGGFRPVYFYQHTSA 339 P +RP++ + + Sbjct: 322 PSEYRPIFDVKAVES 336 >UniRef50_Q1GM88 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Proteobacteria RepID=Q1GM88_SILST Length = 356 Score = 286 bits (732), Expect = 7e-76, Method: Composition-based stats. Identities = 118/328 (35%), Positives = 192/328 (58%), Gaps = 14/328 (4%) Query: 13 MLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARR 72 + PAFSAD + + A++ W +C +P +KD+YWL ++YG+ A R Sbjct: 33 VTPAFSADGSVAEITYEPLAA-------AEKPWNICVSFPHMKDAYWLGVDYGVVAEAER 85 Query: 73 YGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS-STTSFPDLQKQVAS--LPVIE 129 GV+L V+EAGGY++L TQ +QI+ C GA+A+++G+ S ++ +VA +PVI+ Sbjct: 86 LGVNLNVVEAGGYTELNTQISQIEDCVASGADAVIVGAISYDGLNNVISEVAGKGIPVID 145 Query: 130 LVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVEG 187 ++N + + ++ ++ V + MG++ G+YL + A P+ V PGP AG + G Sbjct: 146 VINGVSSTEIAAKSLVSFRTMGFETGKYLAEKHPAGADPVTVGWFPGPAGAGWVEAANTG 205 Query: 188 FRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGE--GRN 245 F AA+ GS V++++ GD E Q L++++L+ +PEI +AGTA+ AEAA G R Sbjct: 206 FMAAVEGSAVKVLEPRYGDTGKEAQLKLVEDVLQANPEISYIAGTAVTAEAAQGVIRERG 265 Query: 246 LKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPP 305 LK + +++FY++ VY G++RG + A +D MV QG +AV+QA+R L+G+ +V P Sbjct: 266 LKGEVDILAFYMTPGVYSGIQRGFITGAPADSMVIQGRVAVDQAVRVLEGKDYLKHVGPK 325 Query: 306 ILVLTPKNADREHIRRSLSPGGFRPVYF 333 I V+ N L P GF PV+ Sbjct: 326 IFVVDQDNVKDVARENILPPDGFSPVFS 353 >UniRef50_C3M5M3 Periplasmic protein TorT n=33 Tax=Vibrio RepID=C3M5M3_VIBC3 Length = 349 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 135/304 (44%), Positives = 191/304 (62%), Gaps = 12/304 (3%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGA 103 A KLCALYP LKDSYWLS+NYGM E AR+ ++L+V+EAGGY QQ QI C +WGA Sbjct: 45 AEKLCALYPHLKDSYWLSVNYGMVEEARKLNLNLRVMEAGGYPNHHKQQQQIALCVRWGA 104 Query: 104 EAILLGSSTTSF--PDLQKQVASLPVIELVNAI-----DAPQVKSRVGVPWFQMGYQPGR 156 +AILLG+ + DL S+PV VN + +K VGV W+ MG+ G Sbjct: 105 DAILLGTVSPELYQDDLAHYTRSVPVFATVNQLRLNEQQQEHLKGEVGVDWYWMGFYAGE 164 Query: 157 YLV-QWAHGKP-LNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRN 214 YL + G + ++++PGP ++GG+K +++G AI S VRI +I DND E+QRN Sbjct: 165 YLARKHPKGSGEIKIVVLPGPASSGGTKPVLQGLEEAIRHSDVRITEILWADNDKELQRN 224 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK--TPLTVVSFYLSHQVYRGLKRGRVIM 272 L+Q+ LE+ P++ + G+A+A EAA+ E R+L + +++ YLSH VYRGL RGRV Sbjct: 225 LIQQALEQ-PDVRYLVGSAVAIEAAISELRSLNKSDQIGLIATYLSHGVYRGLLRGRVEF 283 Query: 273 AASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVY 332 A +DQMV QG L+V QA L+ + + +P I LTPK+ +++ I SLSP +RPV+ Sbjct: 284 APTDQMVEQGRLSVRQAAAFLRNKPYATQQAPKIEALTPKHLEKKIIADSLSPSEYRPVF 343 Query: 333 FYQH 336 + Sbjct: 344 QVKA 347 >UniRef50_Q484F8 Periplasmic protein TorT n=2 Tax=Alteromonadales RepID=Q484F8_COLP3 Length = 356 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 133/345 (38%), Positives = 196/345 (56%), Gaps = 16/345 (4%) Query: 7 LLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKR----AWKLCALYPSLKDSYWLSL 62 ++ LF L A N + ++ + + A + L + KLCA+YP LKDSYWLS+ Sbjct: 11 IVYCLFFLSTAVAANQDQLNNNRATSTIAVSELSTSKVSTGKIKLCAVYPHLKDSYWLSI 70 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQV 122 N+GM E A++ ++LKVL+AGGY Q QI+QC W A AIL+GS +F L +++ Sbjct: 71 NFGMTEQAKQRSIELKVLDAGGYQNKDEQLRQIEQCIHWQASAILVGS--VNFEALNQKL 128 Query: 123 ASL----PVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK----PLNVLLMPG 174 A + PV LVN I + R GV W+QMGYQ G YLV+ P + PG Sbjct: 129 AQVNKHTPVFALVNEIATNNISGRTGVSWYQMGYQLGEYLVKHHQNNFNTTPATLAWFPG 188 Query: 175 PDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 P GGS + +G +AA+ SP+ I+ I G N+ Q +LL++ L+++ ID +AG A+ Sbjct: 189 PKRGGGSLQSTKGLQAALVNSPIEIIAIEHGLNEKITQFSLLKDTLKKYNNIDYLAGNAV 248 Query: 235 AAEAAMGEGRNL--KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 AE A+ E L + ++S YLSH VYRG+KR +++MA SDQMV QG++A+ QA+ Sbjct: 249 MAEMAINEVGRLPKEQQPEILSHYLSHGVYRGIKRHKILMANSDQMVLQGKMAINQAVDY 308 Query: 293 LQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHT 337 L+ V +P I+ + + SLSP F+P+Y + T Sbjct: 309 LKIGKVKTLQAPTIITIDQATIKKLKTELSLSPSNFKPIYSIKAT 353 >UniRef50_B8IKX9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKX9_METNO Length = 356 Score = 279 bits (714), Expect = 9e-74, Method: Composition-based stats. Identities = 116/314 (36%), Positives = 175/314 (55%), Gaps = 7/314 (2%) Query: 26 HDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGY 85 + T+ KA+R W++CA YP LKD+YW+S+NYGM A GV L V++AGGY Sbjct: 42 YSGTPATISFKPIAKAERQWRICASYPHLKDAYWISVNYGMVAQATAAGVRLTVVDAGGY 101 Query: 86 SQLATQQAQIDQCKQWGAEAILLGSSTTSF--PDLQKQVASLPVIELVNAIDAPQVKSRV 143 + Q+ QI+ C A+A+++G+ + ++ A +PVI VN ++ + ++V Sbjct: 102 PNVKRQREQIETCSH-NADALIVGAVSYDGLSEVVRAIAARIPVIAAVNDMEDAGLAAKV 160 Query: 144 GVPWFQMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVD 201 G+ W +MG G YL G V PGP AG K + GFRA +AGS I Sbjct: 161 GISWTEMGRIVGAYLASRHPTGGAAAKVAWFPGPSAAGWVKFIDAGFRAGLAGSAATISI 220 Query: 202 IALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK--TPLTVVSFYLSH 259 + GD +IQ L++E LE P +D + G+A+ A+AA+ R + T + + + Y +H Sbjct: 221 VKWGDTGFDIQSRLVEETLESGPPVDYIVGSAVTADAAVSVLRERRPDTSIKIFADYFTH 280 Query: 260 QVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHI 319 YR +KRGR+I A +D V QG LA++QAIR L+ + +V P IL++ N DR + Sbjct: 281 GTYRAIKRGRLIAAPTDSPVLQGRLAIDQAIRALEQKLEHRHVGPSILLVYKSNVDRLDL 340 Query: 320 RRSLSPGGFRPVYF 333 SL+PG F P + Sbjct: 341 DDSLAPGWFEPRFE 354 >UniRef50_A6FN89 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Rhodobacteraceae RepID=A6FN89_9RHOB Length = 359 Score = 275 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 124/348 (35%), Positives = 179/348 (51%), Gaps = 12/348 (3%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDA-----QHFTVQASTPLK-AKRAWKLCALYPSL 54 MR L L + L A S+ L+ A + TPL A++ W LC YP L Sbjct: 12 MRWFCVLFLVVAPLAAASSPWQLQVPQAPFDYEGPSDIVTYTPLDTAQQDWSLCVAYPHL 71 Query: 55 KDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS--T 112 KD+YWLS+N+GM E ARR GV K++EAGGY L Q+ QI C G +A++LG+ Sbjct: 72 KDAYWLSVNHGMVEEARRLGVSFKLVEAGGYPNLDRQRQQIIDCVAEGVDALILGTVAYD 131 Query: 113 TSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW--AHGKPLNVL 170 + + +PVI VN I P + ++VGV W +MG GR + Q + V Sbjct: 132 ALTDTILQIARDIPVIAAVNDIADPGITAKVGVSWVEMGAAAGRVIAQRHPKGSPAVKVA 191 Query: 171 LMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA 230 PGP AG + + GF AAIA S I GD + Q L+++ LE P++D V Sbjct: 192 WFPGPKGAGWVQFVERGFHAAIAASSAEIAVTKYGDTGRKDQVLLVEQALEEVPDLDYVV 251 Query: 231 GTAIAAEAAMG--EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 G+A AEAA+ R L+ + +VS Y++H VYRG+ R +++ A +D V QG LAVE Sbjct: 252 GSAPTAEAAVSLLRTRGLEGRVQIVSDYMTHAVYRGIYRQKILAAPTDFPVLQGRLAVEF 311 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQH 336 A+R ++G + P I + + +L+P F PV+ + Sbjct: 312 AVRAIEGSLIHRQAGPVIFPVVEGQITEAQLSETLAPASFIPVFEFSP 359 >UniRef50_A3QGS0 TonB box domain protein n=16 Tax=Shewanella RepID=A3QGS0_SHELP Length = 387 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 118/375 (31%), Positives = 193/375 (51%), Gaps = 39/375 (10%) Query: 4 LLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTP----------------LKAKRAWKL 47 L L L + FS + + + ++++ TP AKR W+L Sbjct: 15 LCACLHGLAIAAGFSIS--VTANAVETWSLEQRTPYNAKLQQVKTLSYRPLSTAKRPWRL 72 Query: 48 CALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL 107 CAL P LKD+YW+ ++YG+ A+ GV L++ EAG Y A Q Q++ C + +AIL Sbjct: 73 CALVPHLKDAYWIGIDYGLVTRAQTLGVALELFEAGSYYGKAKQLEQLEHCMKSDFDAIL 132 Query: 108 LGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL--------- 158 LG+ + S P++ LVN +D+P V +R+GV W+QMG+ G ++ Sbjct: 133 LGTVDPELLKQYQGQISKPMLALVNRLDSPLVSTRIGVNWYQMGWHAGDFIHRTTAKQPG 192 Query: 159 ---VQWAH------GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDI 209 + A+ G+ + + L+ GP+ GGS + +G A+ GS V I DN+ Sbjct: 193 KANTEQANTDQTNTGQAVQLALLLGPEKLGGSTWVEQGIMEALEGSNVSISSNRHADNNR 252 Query: 210 EIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG--EGRNLKTPLTVVSFYLSHQVYRGLKR 267 ++ R+ L +L+ H D + G+A+A EAA+G ++ + +VS YLS RGL R Sbjct: 253 DLYRDQLHHLLKDH-RPDYILGSAVAIEAAIGALAQKDTAQDIALVSSYLSPATLRGLYR 311 Query: 268 GRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGG 327 RV ++ DQ+V QG+LA++ +R+L+G + ++ P I LTP N + + SL+P Sbjct: 312 HRVAFSSDDQVVLQGKLAIDVVVRELEGAAPFGDIGPRIKGLTPDNIQMKQLTDSLAPAD 371 Query: 328 FRPVYFYQHTSAAKK 342 F P+Y + A + Sbjct: 372 FYPIYRVEAPKATPQ 386 >UniRef50_C4ZP40 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thauera sp. MZ1T RepID=C4ZP40_THASP Length = 357 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 178/320 (55%), Gaps = 7/320 (2%) Query: 24 RWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAG 83 R + T P R W+LCA+YP LKDSYWL++N+GM E AR G+ L V EAG Sbjct: 35 RAANGAAETGPDIVPPSPTRGWRLCAIYPHLKDSYWLAVNFGMTEEARALGLGLGVREAG 94 Query: 84 GYSQLATQQAQIDQCKQW-GAEAILLGSSTTSF--PDLQKQVASLPVIELVNAIDAPQVK 140 GY QLA Q+ ++ +C + +A+L+G+ + L Q+ V+ +VN ID V+ Sbjct: 95 GYGQLARQRERVAECLEDEAVDALLIGTVSRGGLNDLLAPQLDHRLVLGVVNDIDPQVVR 154 Query: 141 SRVGVPWFQMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVR 198 +R+ VPW+Q+G+ GR+L A G P + +PGP +A + GFR IAGS V Sbjct: 155 ARIAVPWYQLGWTIGRWLAARHPAGGPPARIAWIPGPADADWVGFIDRGFRTGIAGSAVN 214 Query: 199 IVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG--EGRNLKTPLTVVSFY 256 +V GD IQR L++ +L+ P++D + G A AEAA+ R + +VS Y Sbjct: 215 VVAERHGDTGRAIQRRLVEAVLDEQPQLDYLVGNAPMAEAAIAALRRRGREGATAIVSSY 274 Query: 257 LSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 L+ V+ G+ RGR++ A +D V QG LAV QA+R L+G+ + + P + ++ + R Sbjct: 275 LTPAVHGGILRGRILAAVTDFPVLQGRLAVRQALRALEGRPIEPYLGPAVELVDKSSLGR 334 Query: 317 EHIRRSLSPGGFRPVYFYQH 336 ++ L P GF PVY Sbjct: 335 FPVQWMLPPAGFVPVYQIAP 354 >UniRef50_B9L4R0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L4R0_THERP Length = 427 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 93/318 (29%), Positives = 164/318 (51%), Gaps = 12/318 (3%) Query: 33 VQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQ 92 + T KA + + + +P LKD YWL+++YG+ + A+ GV ++++ A GY+ L Q Sbjct: 110 YEKWTRPKANKPYMIGVSFPHLKDPYWLAVDYGIVDEAQILGVGIELVAAQGYNDLTGQI 169 Query: 93 AQIDQCKQW-GAEAILLGS----STTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPW 147 Q++ E I+L + S + PVIE++N I AP + ++ V + Sbjct: 170 NQVENLANRADIEGIILAAISYASQDQLVTDIVKNKKKPVIEVINDIQAPDIMAKALVSF 229 Query: 148 FQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS---PVRIVDIAL 204 + MGY G+++ + + G+ + V+ +PGP +G + + V+GF+AA+ V+I+D+ Sbjct: 230 YDMGYAAGQFVAEDSGGQEVTVVFLPGPAGSGWAPDTVDGFKAAVEEKVPGKVKILDVKW 289 Query: 205 GDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRG 264 GD ++Q +L+++ L +P++ + G A+AA+AA N VVS Y+ +Y Sbjct: 290 GDTGKDVQVSLIEDALNAYPDVTYLVGNAVAADAAPDILANRAKKPKVVSTYIIPPLYDK 349 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSV----SDNVSPPILVLTPKNADREHIR 320 + G+V A +D QG +AV+ +R L G+ P I V+TPKN Sbjct: 350 IAEGKVAAAPTDFTALQGRMAVDMMVRILNGEKPGVDFPFRAGPIIKVVTPKNYKEFKYE 409 Query: 321 RSLSPGGFRPVYFYQHTS 338 P FRPV+ + + Sbjct: 410 DMFGPRDFRPVFSVKPKA 427 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 67/317 (21%), Positives = 147/317 (46%), Gaps = 13/317 (4%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQ-ASTPLKAKRAWKLCALYPSLKDSYWL 60 R+L LLL++FM+ S + +++ V+ ++ K K+ +L + +++ Sbjct: 6 RLLSVLLLAIFMITGCSIEGQNNKEESKESGVEEKASETKTDGDMKIGVSLSTLNNPFFV 65 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 S+ G++EAA + V+ + +A + +TQ Q++ G + I++ ++ Sbjct: 66 SIREGVEEAAGKENVETVITDAQ--NDSSTQNNQVEDLITQGVDLIVINPVDSTAIATSV 123 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + A++PVI + D ++ S + + G G Y+++ G+ V+ + G Sbjct: 124 EKANEANIPVICVDRGSDQGELVSFIASNNVEGGKLAGEYILEKV-GENAEVIQLEGIPG 182 Query: 178 AGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 A ++E EGF A G + ++ + D +++ +L+ HP++ V E Sbjct: 183 ASSTRERGEGFEEATNG-KINLLASQTANFDRAEGMTVMENLLQAHPDVKAVFC--QNDE 239 Query: 238 AAMGEGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 A+G +K +T+V F + + ++ G + + + G+LA+E AI+ L+ Sbjct: 240 MALGASEAIKASGKDVTIVGFDGNEDAIKAVEEGNLSATVAQKPKEMGKLAIETAIKYLK 299 Query: 295 GQSVSDNVSPPILVLTP 311 G+ V + V P+ ++ Sbjct: 300 GEEVEETVDSPLELIKK 316 >UniRef50_A9D600 Periplasmic protein TorT n=1 Tax=Shewanella benthica KT99 RepID=A9D600_9GAMM Length = 435 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 119/393 (30%), Positives = 184/393 (46%), Gaps = 60/393 (15%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWH---------DAQHFTVQASTPLK-AKRAWKLCALYP 52 V LL S+ A ++ N W Q +A PLK AK+AWK+CAL P Sbjct: 42 VFSILLFSMSGNFAHASTNSSAWALEQRSPFNVKVQQAKTRAYYPLKRAKQAWKICALVP 101 Query: 53 SLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST 112 LKD+YW+ ++YG+ + AR + L++ EAG Y + Q +Q+ C +AILLG+ Sbjct: 102 HLKDAYWIGIDYGLVQHARALNITLELFEAGSYYKKVKQLSQLSHCMDGDYDAILLGTVD 161 Query: 113 TSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL---VQWAHGKPLNV 169 Q + PVI LVN ID+ +V +R+GV W+QMG+ G ++ V+ + + +NV Sbjct: 162 PKLLASFHQPITKPVIALVNRIDSHKVTTRIGVNWYQMGWFAGNFIKQDVEQGNAQQVNV 221 Query: 170 LLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDI----------------ALGDNDIEIQR 213 L+ GP+ GGS + EG AA+ + DN+ + R Sbjct: 222 ALLTGPEKQGGSDWVEEGIVAALQPASKTSSSDSAKNSSKSSKITISSIRHADNNRNLYR 281 Query: 214 NLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT------------------------- 248 + L +L+ D + G+A+A EAA+GE + Sbjct: 282 DQLYHLLKDQT-PDYILGSAVAIEAAVGELAIKQARHGSTLISRPEQEPQLSEVAQLRGN 340 Query: 249 -----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVS 303 + +VS YLS V RGL R RV ++ D +V QG+LA++ +R+L+G ++ Sbjct: 341 SQPAPQIKLVSSYLSPAVLRGLFRNRVAFSSDDSVVLQGKLAIDVVVRELEGAKPFGDIG 400 Query: 304 PPILVLTPKNADREHIRRSLSPGGFRPVYFYQH 336 PPI L + + SL+P F P+Y Sbjct: 401 PPIQGLQGDVLKKHKLENSLAPADFYPIYRVNP 433 >UniRef50_Q162F2 Periplasmic protein TorT n=3 Tax=Rhodobacteraceae RepID=Q162F2_ROSDO Length = 336 Score = 241 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 102/324 (31%), Positives = 163/324 (50%), Gaps = 13/324 (4%) Query: 16 AFSADNLLRWHDAQHFTVQASTPLKAKRAWKL-CALYPSLKDSYWLSLNYGMQEAARRYG 74 A + + A +V A P A +A K+ CAL P KD YWLS+ +G+++ A+R Sbjct: 14 ATGIGTIATFCLALTLSVTALPPSAAAQAHKVFCALVPHFKDEYWLSVGFGLEQEAQRNN 73 Query: 75 VDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF----PDLQKQVASLPVIEL 130 D+ EAGGY A Q Q++ C G +AIL+G+ + +++ +PV L Sbjct: 74 TDILFFEAGGYGDPAVQIDQLETCVTRGVDAILIGAVASDHNGLTEAIERAARDVPVFGL 133 Query: 131 VNAIDAPQVKSRVGVPWFQMGYQPGRYL--VQWAHGKPLNVLLMPGPDNAGGSKEMVEGF 188 VNA+ + + RVGV W MGY G++L + A +L+ GP +G + + G Sbjct: 134 VNAVHSDALAGRVGVDWRDMGYLLGQHLSTLHPAGSPAQTAVLVTGPAGSGWTGPLEAGL 193 Query: 189 RAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG--EGRNL 246 R +A S V I+D+ D + Q L ++ LERHP + + G+A A EAA+G R Sbjct: 194 REGLARSSVTILDVLGADTGLRHQLALSEQALERHPGANYLIGSAPAIEAALGLLATRPH 253 Query: 247 KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPI 306 + +V+ Y++H V RGL V+ A+ D + Q +A++ A + + P + Sbjct: 254 RDKPVLVATYVNHTVKRGLMNASVLAASFDDPMVQARMAIKMAASA--PARSAQTLGPKV 311 Query: 307 LVLTPKNADREHIRRSLSPGGFRP 330 +VLT N+D +SP + P Sbjct: 312 VVLT--NSDDNLTEVRMSPADYFP 333 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 135/320 (42%), Gaps = 13/320 (4%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ +L + A T ++T + + KL +L + +++ Sbjct: 1 MKRWTAMLAVGVVAAGVLAGCGTSVSTGSQKTNLSNTGTASTKPIKLGFAVSTLNNPFFV 60 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT---SFPD 117 +++ G+QE A++ GV + +L G + ATQ Q++ Q AI+L + + S Sbjct: 61 AMSNGVQEEAKKLGVQVTIL--NGNNDPATQLNQVEDLIQQHVNAIILNPTDSQSLSTAV 118 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 Q A +PVI L ++ V + + G L++ GK V+ + G Sbjct: 119 EQANRAHIPVITLDRSVTKGNVACFIASNSVEAGKMAADELIKALGGKG-QVVELQGVIG 177 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 + +GF I +P +R+V + D N++Q +L+ HP I V A Sbjct: 178 TSAEADREKGFDEEIGKAPGIRVVARQTANFDRSQALNVMQNILQAHPNIQGVF--AQND 235 Query: 237 EAAMGEGRNL----KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 E A+G + + K + +V + + +G + + Q V +G L VE A++ Sbjct: 236 EMALGALKAIQEAGKHNIKIVGIDGEKEAVNDVHKGLLYADIAQQPVQEGILGVEYAVKL 295 Query: 293 LQGQSVSDNVSPPILVLTPK 312 ++G+ V V+ P+ ++ Sbjct: 296 VEGEKVPKQVNSPLHLVEKN 315 >UniRef50_A9AX43 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX43_HERA2 Length = 379 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 96/298 (32%), Positives = 159/298 (53%), Gaps = 7/298 (2%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 + A +A +C P +KDSYWL++NYG+ A R G++++++EAGGY L TQ QI QC Sbjct: 75 VVADKAETICVSIPHIKDSYWLAVNYGVVSEAERLGINVEIVEAGGYGNLPTQITQIRQC 134 Query: 99 KQWGAEAILLGSSTTSFPD---LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPG 155 GA+A+++G+ + + ++ Q +PVI +N I + + ++ + G + Sbjct: 135 VANGAKAVVIGAISLDGLNDLIVELQSQKIPVIAFMNDISSKAITAKSLSVPGEGGQEIA 194 Query: 156 RYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQR 213 +YLVQ ++V PGP+ AG SK E F+A I G + IV+ GD E Q Sbjct: 195 KYLVQKHAKGSDAVDVAWFPGPEKAGWSKAADEKFKATITGGAINIVETKYGDTGKEEQA 254 Query: 214 NLLQEMLERHPEIDVVAGTAIAAEAA--MGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVI 271 L++E+L HPEID + GT A A + R L+ + ++++Y+S +VY L+ G + Sbjct: 255 KLIEEVLIAHPEIDYIVGTGQTAVTAAEILRERKLQDKIKIMAYYISPEVYAELQSGGIQ 314 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFR 329 AA V +A++Q +R L+G+ +V P V+ + S+ P F+ Sbjct: 315 AAAVAPPVTIARIAIDQTVRILEGKEFMAHVGPKSFVIDTASLTSFDPTTSIPPETFK 372 >UniRef50_C5V4K8 Periplasmic binding protein/LacI transcriptional regulator (Fragment) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4K8_9PROT Length = 381 Score = 237 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 92/333 (27%), Positives = 157/333 (47%), Gaps = 15/333 (4%) Query: 18 SADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDL 77 SAD+ L T + P A R W++ L+P +KD YW+ YG+ A+R GV + Sbjct: 51 SADDALSTGRVVDSTYVMAEP--ASRPWRIAFLFPHVKDPYWVDCTYGLISEAKRLGVAI 108 Query: 78 KVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS--STTSFPDLQKQ-VASLPVIELVNAI 134 + A GY L Q ++D+ +AI++ T + P + K +PV +L N Sbjct: 109 DIFPADGYDDLIGQLRKMDEVIAEKYDAIVISPISQTANNPSIAKARSRGIPVFQLANDS 168 Query: 135 DAPQVKSRVGVPWFQMGYQPGRYLVQWAHG---KPLNVLLMPGPDNAGGSKEMVEGFRAA 191 + + ++ MG ++++ A K +NV L+PGP +AG V G RAA Sbjct: 169 TSDDLTIKITSSLKGMGVDTMGWVIRDAQRRGLKAINVALLPGPADAGWVMGEVAGARAA 228 Query: 192 IAGSPVR--IVDIALGDNDIEIQRNLLQEMLERH-PEIDVVAGTAIAAEAAM--GEGRNL 246 SP++ I DI GD+D+ Q L +++L H ++D + G A AA+ L Sbjct: 229 AKKSPIKVNIADIRYGDSDLVGQSQLAEQLLAAHGSKLDYILGCTACAPAAILPVHDAGL 288 Query: 247 KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQG--QSVSDNVSP 304 K + +V+F L+ ++ ++RG + A + V Q +A+ + L+G +S + Sbjct: 289 KEKIRIVAFGLTREMIGHIRRGEIYAATDVKGVSQARVAINATVNYLEGRIESRPHTMLI 348 Query: 305 PILVLTPKNADREHIRRSLSPGGFRPVYFYQHT 337 + ++ N + + S SP +R V Y T Sbjct: 349 KLGMVDRDNYAQYNYDVSTSPPAYRTVLSYDPT 381 >UniRef50_A6M1W5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M1W5_CLOB8 Length = 425 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 78/310 (25%), Positives = 151/310 (48%), Gaps = 16/310 (5%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ-QAQIDQ 97 +K K+ + + L P +D YW+S NYG+ A+ GV +K+ GGY + Q + +D Sbjct: 111 IKPKKEYTIGVLLPHFEDQYWVSANYGIINYAKELGVKVKLYAVGGYIEFGNQKEELMDL 170 Query: 98 CKQWGAEAILLGS-STTSFPDLQKQVAS--LPVIELVNAIDAPQVKSRVGVPWFQMGYQP 154 + + I+ + T F + + P++ LVN I++P + ++ V ++ MGY+ Sbjct: 171 AEDDKIDGIVFATLDNTKFNSDVENIVHNDKPIVALVNDINSPDISAKAIVSYYDMGYKA 230 Query: 155 GRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIA-----GSPVRIVDIALGDNDI 209 G Y+V+ + GK + + PGP +G + + + GF+ A++ + I + GD Sbjct: 231 GEYVVEDSAGKDIKIAFFPGPKESGWASDTLNGFKDAVSRLKTNDQKIDISNPFYGDTRP 290 Query: 210 EIQRNLLQEMLERHPEIDVVAGTAIA---AEAAMGEGRNLKTPLTVVSFYLSHQVYRGLK 266 ++QR + +LE + + D + G A A AE + + + + +VS Y++ V+ +K Sbjct: 291 DVQRLHITSVLENNDDYDYLVGCAPAVIEAEKFISKRKEKFKNIRIVSTYMTSDVFNLIK 350 Query: 267 RGRVIMAASDQMVWQGELAVEQAIRQLQGQSV----SDNVSPPILVLTPKNADREHIRRS 322 +G V+ + SDQ + Q +A++ +R L G+ P + +++ N R Sbjct: 351 KGAVLASPSDQTIQQCRIALDMIVRILNGEKAGVDFPFQSGPCVPIISRDNISRFKYEDL 410 Query: 323 LSPGGFRPVY 332 + PV Sbjct: 411 FGSKEYIPVL 420 >UniRef50_A1S2M5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Shewanella RepID=A1S2M5_SHEAM Length = 361 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 97/327 (29%), Positives = 164/327 (50%), Gaps = 7/327 (2%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 ++ LL++ L AF+ L H + + + P KA R W++CAL P KD YW + Sbjct: 9 KIVTLLIAFIALTAFAEGPGLEMHIDGNAGIYQA-PEKATRPWRICALLPHGKDHYWWGV 67 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQ- 121 +G+ + A+R G+++ + +AGGY +LA Q+ Q+ QC + A ++ + T + + Sbjct: 68 AWGLSQEAQRLGIEIGIYDAGGYDKLAEQKRQLKQCHRLKANGYIIAAITADGLSAEVEL 127 Query: 122 --VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAG 179 +PVI+LVN +++ V SR V + M +Y++ +PLNV PGPD A Sbjct: 128 LMADGIPVIDLVNGMNSE-VSSRSLVSFVDMATAAAKYMLATEPNRPLNVAWFPGPDGAA 186 Query: 180 GSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAA 239 K+ G AI G +R+V G + +Q +L++ ++ R ++A A AA Sbjct: 187 WVKDAETGLAEAIVGEDIRLVHGGYGMTETFVQADLVRGLVSRIQAEYIIANAVAATVAA 246 Query: 240 MGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVS 299 G KT V++FY + Q ++ G + +D V Q ++V+ A++ L+ S Sbjct: 247 KYFGNRGKT--KVIAFYSNPQTIELVRDGTLQATVTDSPVLQARVSVDLAVQWLEQGSAP 304 Query: 300 DNVSPPILVLTPKNADREHIRRSLSPG 326 VSP I VLT +N + +L P Sbjct: 305 RLVSPVIQVLTSENLAAADLSLTLPPE 331 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 224 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 120/282 (42%), Gaps = 10/282 (3%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 + + +L YW ++ G +AA+ GV ++VL + + Q + I+ G +A Sbjct: 40 NVAVVLKALNSDYWKTVQAGANDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDA 99 Query: 106 ILLGSSTTSFPDL---QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 +++ + + + +PV+ + + + KS VG G G Y+ + Sbjct: 100 LVVAPLQPNAAITTFDKAEKEKIPVVLIDTDANWDKKKSFVGTGNIAAGKLGGEYISKKL 159 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLER 222 K +++ G E +G + A+ + +++V+I +++ E ++++ +L+ Sbjct: 160 K-KGDEAIIIRGVPGDRTQDERTQGAQKALEAAGIKVVEIQPANSEREKAISVMENLLQT 218 Query: 223 HPEIDVVAGTAIAAEAAMGEGRNL----KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQM 278 HP I V T E A+G + L K + + S + +K G + + Sbjct: 219 HPNIKGVFCT--NDEMALGAVKALQQAGKKNIISIGVDGSPDALKSIKEGGLTGTVAQNS 276 Query: 279 VWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 G+ VE A++ L+G+ V + ++ +N + + + Sbjct: 277 YDIGKKGVETAVKVLRGEKVETRIDTGTTLVDKQNVNEQEAK 318 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 223 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 128/290 (44%), Gaps = 11/290 (3%) Query: 28 AQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQ 87 + ++ L A+ + + +L + +++++ G + A+ G +L VL++ + Sbjct: 8 ISAALLTSTVSLGAQAQDTMAIVVSTLNNPFFVTMKDGAETRAKELGYNLIVLDSQ--ND 65 Query: 88 LATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVAS---LPVIELVNAIDAPQVKSRVG 144 + + + ++ G +AIL+ + + ++A+ +PV+ L V S + Sbjct: 66 PSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGDVVSHIA 125 Query: 145 VPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIAL 204 G G ++V+ K V+ + G ++E EGF A+ GS + ++ Sbjct: 126 SDNVVGGEMAGNFIVEKVGEK-AKVIQLEGIAGTSAARERGEGFMNAVKGSHMELLASQP 184 Query: 205 GDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK---TPLTVVSFYLSHQV 261 D D N+++ +L +P++ V A E A+G R ++ + +V F + Sbjct: 185 ADFDRTKGLNVMENLLAANPDVQAVF--AQNDEMALGALRAIQASGKEVMIVGFDGTDDG 242 Query: 262 YRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTP 311 + RG++ + Q G L +E A + L+G+ V D + P+ V+T Sbjct: 243 IAAVNRGKLAATIAQQPDLIGALGIETADKVLKGEQVEDYIPVPLKVVTK 292 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 139/332 (41%), Gaps = 24/332 (7%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + +L +LLS ++ + + K + + SL +++++ Sbjct: 5 KKILAVLLSTLLIGSAILTGCGSKESSVDKKD------KDPKEVTVGLSLSSLSNAFFIG 58 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG--SSTTSFPDLQ 119 + G+++ G L +E +A Q + I+ + +++ + P ++ Sbjct: 59 MEKGVKDKTSEIGCKL--IETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVK 116 Query: 120 KQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLN---VLLMPGP 175 K A++P+I L ++ + + + +MG Q +++ K LN V+ + G Sbjct: 117 KAKEANIPIIFLDRGANSEDMTTFLETDNVKMGEQAAELILKALKDKGLNGGNVVEIEGL 176 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG--- 231 +++ +GF + V+IV GD + E N++Q +L+ +P+ID V G Sbjct: 177 QGTSAARDRGKGFHNVMDKHKEVKIVAKQAGDFNQEKSMNVMQNILQANPKIDAVFGHND 236 Query: 232 -TAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELA 285 + AE A+ +K + VV +Q +K+G + ++ S + G A Sbjct: 237 DCTVGAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIESVKKGNIDVSISQDPIGMGVQA 296 Query: 286 VEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 VE ++ ++G+ V ++ +T NA E Sbjct: 297 VEVGLKAIKGEQVEKHIYTKFFPITKDNATDE 328 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 59/328 (17%), Positives = 124/328 (37%), Gaps = 15/328 (4%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHF--TVQASTPLKAKRA--WKLCALYPSLKD 56 M+++ L + A S + + + K+ + + + Sbjct: 1 MKLVKKLTFAFVATLAVSTLTACSLYTGIPGRDGKEKVEEVTHKKPNELNIGVSISTTNN 60 Query: 57 SYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG--SSTTS 114 Y++S+N ++ A+ L V +A + ATQ + +AIL+ S Sbjct: 61 PYFVSMNNAIKSMAKEKNTKLTVSDAQ--NDSATQLNNVQNFISQNVDAILINPVDSDAI 118 Query: 115 FPDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP 173 P ++ A +PVI + + V + V G + V+ GK + VL + Sbjct: 119 VPAIKAANNAHIPVIAMDRGSNGGTVLTTVASDNVAAGKMAAQA-VEKLVGKNVKVLELS 177 Query: 174 GPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA 233 G A + + +GF + + I+ + D N Q ML+ H ++ + A Sbjct: 178 GTPGASATIDRGKGFNSEAKTLGLNILSSQSANFDRTTGLNTTQNMLQSHKDVQAIF--A 235 Query: 234 IAAEAAMGEGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 E A+G + ++ + + + + +K G + + Q GE+A++ Sbjct: 236 QNDEMALGAAKAVQATGQKIAIFGIDGESETHDAIKAGTMTATIAQQPAKIGEMALQATY 295 Query: 291 RQLQGQSVSDNVSPPILVLTPKNADREH 318 QG+ ++ ++ PI ++ N D+ Sbjct: 296 DYYQGKKIAHMINSPIYLVDKDNVDQHQ 323 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 137/316 (43%), Gaps = 21/316 (6%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 V + L LSLF+L A S + +W + K+ + + +L + +++SL Sbjct: 5 VSVILTLSLFLLTACSLEPP-QWAKPSNSGN--------KKEFTIGLSVSTLNNPFFVSL 55 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQ 119 G+++ A++ G+ + +++A + + Q + ++ Q G +A+L+ + +S Sbjct: 56 KKGIEKEAKKRGMKVIIVDAQ--NDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVES 113 Query: 120 KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAG 179 +PV+ + + + +V++ V + G ++ GK V + G A Sbjct: 114 ANAVGVPVVTIDRSAEQGKVETLVASDNVKGGEMAAAFIADKL-GKGAKVAELEGVPGAS 172 Query: 180 GSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAA 239 ++E GF IA +++V D D +++ +L+ HP+I V A E A Sbjct: 173 ATRERGSGFHN-IADQKLQVVTKQSADFDRTKGLTVMENLLQGHPDIQAVF--AHNDEMA 229 Query: 240 MGEGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQ 296 +G + + V+ F + +K ++ + Q G+LA E A L G+ Sbjct: 230 LGALEAINSSGKDILVIGFDGNKDALASIKDRKLSATVAQQPELIGKLATEAADDILHGK 289 Query: 297 SVSDNVSPPILVLTPK 312 V +S P+ + T K Sbjct: 290 KVQKTISAPLKLETQK 305 >UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0I6_RUMGN Length = 337 Score = 221 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 66/295 (22%), Positives = 129/295 (43%), Gaps = 13/295 (4%) Query: 40 KAKRAWKLCALYPSLK--DSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQ 97 + KR +K+ + ++ + +W L G + A +G +++V+ + Q I++ Sbjct: 40 QNKRTYKIIMVPKTIDESNDFWTGLIEGAKLGAEEFGCEIEVVGSDSEDDYEGQNRLIEE 99 Query: 98 CKQWGAEA--ILLGSSTTSFPDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQP 154 + +A I S T + +Q+ + A + VI + + ID V F+ G + Sbjct: 100 SIKKNPDAFLIAPCSYTHTTEAVQEAINAGIKVILVDSVIDKEIANGVVATDNFKAGKEL 159 Query: 155 GRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRN 214 G + + + ++ + + E +G R + RI DI ++ ++ + Sbjct: 160 GTF-AKTILKPDSKIGVVAHVKGSSTATEREDGIREGLGEDQNRIQDIVYCNSSYDLASD 218 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGR 269 L ++ML+ PEIDVV GT +A+G R +K + VV F S + + L+ G Sbjct: 219 LTEKMLKERPEIDVVIGT--NEYSAVGAARGVKKMGMEDQVKVVGFDNSVEQIQLLEAGV 276 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 + G L VEQA++ ++G + N+ ++T +N E +R L Sbjct: 277 FQGIVIQKPFNIGYLGVEQAVKAIEGYPMEYNLDSGCKLITKENMYEEENQRLLY 331 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 220 bits (560), Expect = 6e-56, Method: Composition-based stats. Identities = 68/316 (21%), Positives = 135/316 (42%), Gaps = 22/316 (6%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 + +F L+L L A S + + K+ +LK+ +++SL Sbjct: 5 LTVFTALALLFLSACSLEPPEWAKPNKEKGT----------DIKIGLSVSTLKNPFFVSL 54 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQV 122 G+ + A++ G+++ V++A A Q ++ Q G +A+L+ + +S Q Sbjct: 55 KNGVVKEAKKQGIEVIVVDAQ--DDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQS 112 Query: 123 A---SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAG 179 A +PV+ L + + +V++ V + G ++V+ GK V + G A Sbjct: 113 ANSLGIPVVTLDRSAENGKVETLVASDNVKGGQMAADFIVEQL-GKGAKVAELEGVPGAS 171 Query: 180 GSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAA 239 ++E GF A + ++ D D N+++ +L+ +P+I V A E A Sbjct: 172 ATRERGSGFHKT-ADDKLNVIAKQTADFDRTKGLNVMENLLQGNPDIQAVF--AHNDEMA 228 Query: 240 MGEGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQ 296 +G ++ + VV F + + ++ G + + Q G+LAV+ A L G+ Sbjct: 229 LGAIEAIRSSGKEILVVGFDGNEDAVKAVQAGDMSATIAQQPELIGKLAVQAARDILNGK 288 Query: 297 SVSDNVSPPILVLTPK 312 V + P+ + T K Sbjct: 289 KVEKTIPAPLKLETKK 304 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 216 bits (551), Expect = 7e-55, Method: Composition-based stats. Identities = 64/328 (19%), Positives = 144/328 (43%), Gaps = 19/328 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 MRV L L + + A + + K+ + +L+ +++ Sbjct: 1 MRVRKILSLGIAGILAIGMLTGCSMEGPSKSDNKGGS---DKKDLTIGVSTITLQHQFFI 57 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL--GSSTTSFPDL 118 ++ G++E A+ GV + V + +A Q + I+ Q + +++ ++ P + Sbjct: 58 DIDEGIKEKAKELGVKVIVNDP--DQDVAKQTSAIEDFIQQNVDGMIVLGTDNSAIVPAV 115 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK---PLNVLLMPGP 175 + +PV+ + ++ + S VG + G + G Y ++ K + ++ Sbjct: 116 EGAFEKMPVVTVDAVLNTENITSYVGTVSYDAGKKLGEYTKKYIDEKLGGKSEIAIVT-D 174 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA- 233 + + ++GF+ A+ GS V+I++ G D E N ++ +++ +P++D++ TA Sbjct: 175 LKSQIQMQRIDGFKDALKGSANVKILNSQPG-YDREESLNTVENLIQSNPDVDIIYATAE 233 Query: 234 ---IAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 + A+AA+ +N + +V F L+ + G+ G ++ Q G LAVE + Sbjct: 234 NSVLGAKAALESAKN--KDVKIVGFDLTEEASSGITDGTILAMIQQQPKEMGRLAVEAVV 291 Query: 291 RQLQGQSVSDNVSPPILVLTPKNADREH 318 + ++G+ V N+ P L+ +N Sbjct: 292 KAIKGEKVEKNIPVPALLYDKENIKDFK 319 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 54/290 (18%), Positives = 125/290 (43%), Gaps = 11/290 (3%) Query: 28 AQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQ 87 + S A+ + + +L + +++++ G + A+ G +L VL++ + Sbjct: 10 ISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLDSQ--ND 67 Query: 88 LATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVAS---LPVIELVNAIDAPQVKSRVG 144 + + + ++ G +AIL+ + + ++A+ +PV+ L +V S + Sbjct: 68 PSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEVVSHIA 127 Query: 145 VPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIAL 204 G G ++ + G V+ + G ++E EGF A+ GS ++++ Sbjct: 128 SDNVVGGEMAGHFI-EAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSKMQLLASQP 186 Query: 205 GDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK---TPLTVVSFYLSHQV 261 D D N+++ +L +P++ V A E A+G R ++ + +V F + Sbjct: 187 ADFDRTKGLNVMENLLAANPDVQAVF--AQNDEMALGALRAIQASGKSVMIVGFDGTDDG 244 Query: 262 YRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTP 311 ++RG++ + Q G + +E A + L+G+ V + + V+ Sbjct: 245 IAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVIAK 294 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 117/277 (42%), Gaps = 6/277 (2%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGA 103 ++ + +L YW + G + A + GVD+ V+ S++ Q I+ Sbjct: 36 EERVAVVLKTLSSPYWKYVEAGAKAAGKELGVDVTVVGPNAESEVMQQINMIEDQLNQSP 95 Query: 104 EAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAH 163 A+++ S + A++PV+ + S +G ++ GY+ G+ L Sbjct: 96 GALVVSPSQPDTVVPVLETATVPVLLIDTDAKLKNKTSFIGTENYEAGYEGGKLLSSLLQ 155 Query: 164 GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERH 223 K V ++ G + E V+G +AA+ + + IV D+D ++++ +L+++ Sbjct: 156 -KGDKVAIISGALGNTATDERVKGAKAALEEAGMVIVAEQPADSDKTKAMSVMENILQKN 214 Query: 224 PEIDVVAGTAIAAEAAMGEGRNLKT---PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVW 280 ++ V A + A+G R ++ + V+ + + + G++ + Sbjct: 215 NDVKGVF--AANDDMALGVLRAVEAKGLDVKVIGTDGTLEAVESILDGKLAGTIAQNPYK 272 Query: 281 QGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 G V+ A+ + G+ V ++ + V+T NA + Sbjct: 273 MGYEGVKNALAAINGEKVDKRINSGVEVITKDNAQEK 309 >UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Ruminococcus RepID=C6JCU3_9FIRM Length = 325 Score = 214 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 111/279 (39%), Gaps = 11/279 (3%) Query: 55 KDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS 114 + +W S+ G + AA Y DL++L + Q + + + +AIL S+ Sbjct: 48 TNDFWTSVISGCKMAAEEYESDLEILAPDKEENIEEQNKLLKKAIEQKPDAILFSPSSMD 107 Query: 115 FPDL---QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLL 171 D + + + + + + V G G Y + K + + Sbjct: 108 SSDELLKEAKEKGIRITYIDSYTKEKLQDLTVATDNVNAGRMLGEY-ARKLIDKDSKIAI 166 Query: 172 MPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG 231 + + E +GFR + IVDI ++ E L QE++ ++P+++++AG Sbjct: 167 VSHVKGVSTAVEREQGFREGLGDYADNIVDIVYCNSLYEKSYELAQELMRKYPDLELIAG 226 Query: 232 TAIAAEAAMGEGRNL-----KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 + +A+G GR + K + VV S + ++ G + G + V Sbjct: 227 --MNEYSAVGVGRAVSDAGAKDKIAVVGVDCSQEAINLMEMGVYKGIIVQKAFRMGYIGV 284 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 E+ I L G +V N+ ++TP+N I R + P Sbjct: 285 EETIHMLNGDAVEKNIDSGCELVTPENMYNSDIERLIFP 323 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 66/322 (20%), Positives = 140/322 (43%), Gaps = 17/322 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 + V + +LF L A L D+ KA + K+ +L + +++ Sbjct: 9 LMVAVVATAALFTLTACGGTGLSSKSDS-----NTKVTKKAPKDLKVGVSLSTLSNPFFV 63 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--PDL 118 S+ G+Q+ A++ +++V +A + A Q + I+ Q + +++ +S P + Sbjct: 64 SVRNGIQDLAKKNKTNVQVSDAQ--NDTAKQNSNIEDLIQKKVDVLIINPVDSSAITPAV 121 Query: 119 Q-KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + A +PVI + + D +V + V + G +Y+++ GK + + G Sbjct: 122 KDANDAGIPVITVDRSSDGGKVLTLVASNSTKGGQMAAKYMIEKL-GKDAKIAELQGIPG 180 Query: 178 AGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 A ++E +GF A + IV D + + +L+ + +I V + E Sbjct: 181 ASATRERGKGF-DGAAKGKLDIVSKQTAGFDRAKGLTVTENILQGNGDI--VGIFSQNDE 237 Query: 238 AAMGEGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 A+G + +K +T+V F + +K G + + + G LA++ A Sbjct: 238 MALGAVQAVKAAGKKITIVGFDGEADGIKAVKAGDMAATVAQKPEEMGRLALQAAYDHFN 297 Query: 295 GQSVSDNVSPPILVLTPKNADR 316 G++V NV P+ ++T ++A++ Sbjct: 298 GKTVKKNVESPLSLVTTEDANK 319 >UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PA90_9FIRM Length = 338 Score = 210 bits (534), Expect = 7e-53, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 123/339 (36%), Gaps = 16/339 (4%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLK-----AKRAWKLCALYPSLKD 56 R+L +L + + + A T S P + + S Sbjct: 3 RILSAILSAAMAASLVACGSSQSHSSAPADTPAPSVPAESAADAPDDKLTFGLVVMSTNS 62 Query: 57 SYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF- 115 YWL+L G QEA G +L + + Q + ++ +AILL + Sbjct: 63 DYWLTLKDGAQEAVDAIGGELVFTGPADNNDIQGQVSLMENLINSKVDAILLTPLDSDAL 122 Query: 116 --PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP 173 P + A +PVI + +A++ + S + G L++ G V+++ Sbjct: 123 AAPVEKAMDAGIPVIVIDSAVNTDKYTSFIATDNVAGGRMAMERLIESIGGSG-EVVVVN 181 Query: 174 GPDNAGGSKEMVEGFRAAIAG-SPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT 232 + +G A + ++ D + ++ +P + + T Sbjct: 182 ALAGIPSNDARGQGAEEYAATVDGITVLPQQHC-LDQAEAMTATENVIIGNPNLKGIFAT 240 Query: 233 ----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 A+ A A+ + + +V+F + L+ G + Q G++ +E Sbjct: 241 FNRGALGAAQAI-VSKGKAGEIKMVAFDADADEIKLLEDGTIDALVVQQPYEMGKIGIEY 299 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGG 327 A++ L G+ V V+P +++ T N + E I + L P G Sbjct: 300 AVKALNGEEVPKTVAPEVVIATKDNMNDEAIHKVLYPKG 338 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 209 bits (533), Expect = 9e-53, Method: Composition-based stats. Identities = 64/323 (19%), Positives = 125/323 (38%), Gaps = 12/323 (3%) Query: 4 LLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLN 63 L L+L L + FS + + + T ++S +++ + + + D +WL++ Sbjct: 8 LTILVLVLAISLVFSGCSSKQQTPSSSSTQESSQTASSEKKYNIVLITMDSMDEHWLAVK 67 Query: 64 YGMQEAARRYG-VDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST--TSFPDLQK 120 G + A+ G V L + Q ++ A+AIL+ + P ++K Sbjct: 68 AGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMEDAINQKADAILIAPTDQTALTPVVEK 127 Query: 121 Q-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAG 179 A +PVI + + + + S V + L + GK + ++ +G Sbjct: 128 AFDAGIPVILIDSPVKTDKYVSFVATDNIKAAEMAADKLGELLGGKG-KIAIISAQPGSG 186 Query: 180 GSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT----A 233 + GF+ + ++I+ D N ++L HP++ GT Sbjct: 187 TTIMRENGFKDRLKEKYPDIQIITTQYSMGDKNRALNQALDILTAHPDLAGFYGTNEGST 246 Query: 234 IAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL 293 I A+ + ++L + VV F +S +K + + G VE A+ +L Sbjct: 247 IGIAMAI-KQKDLAGKVKVVGFDISQATINAIKENYIQASMVQNPYMMGYKGVEIAVDKL 305 Query: 294 QGQSVSDNVSPPILVLTPKNADR 316 QG+ V V + V+T N D Sbjct: 306 QGKEVPKRVDTGVTVMTKDNVDE 328 >UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQW7_9CLOT Length = 354 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 71/318 (22%), Positives = 118/318 (37%), Gaps = 8/318 (2%) Query: 18 SADNLLRWHDAQHFTVQASTPLKAK-RAWKLCALYP-SLKDSYWLSLNYGMQEAARRYGV 75 +A + + + P +AK A K+ A+ P SL YW + G Q A G Sbjct: 34 AAQTQAQTEKESTAQKENAAPTEAKEDAEKVIAVIPKSLLFDYWQYVRIGAQSAGLDEGY 93 Query: 76 DLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS--STTSFPDLQK-QVASLPVIELVN 132 + + L Q ++ Q G AI++ P LQ+ + A +PVI + Sbjct: 94 AIDFQGTRTDTDLEGQVKLVEDFIQRGVSAIVISPVNPDGMVPVLQQAEDAGIPVIIMDG 153 Query: 133 AIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI 192 ++A +S V G L + A ++ A +GF + Sbjct: 154 KLNADFPRSTVSTNDEAAGKFAAEKLKELAGDAGGTFAIVSAVPGAVQEGGREKGFSDEL 213 Query: 193 AGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEID--VVAGTAIAAEAAMGEGRNLKTP 249 P +I+ G D N+ Q++L +P+I +A +G Sbjct: 214 GTYPNYKIIGTYYGKGDRNQTYNITQDILTSNPDITGFYTVNEGSSAGVTLGVREGDLKE 273 Query: 250 LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVL 309 V+F S +V ++ G V A + G AV AI+ L G++V + P+ + Sbjct: 274 KIFVAFDPSTEVLDAIRDGYVDGAVAQNPYLIGRTAVLNAIKVLNGETVEKKIDVPVTWV 333 Query: 310 TPKNADREHIRRSLSPGG 327 T N D I+ L P Sbjct: 334 TIDNLDDPEIQNVLKPEE 351 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 56/275 (20%), Positives = 122/275 (44%), Gaps = 13/275 (4%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 K+ + +L + +++++ G ++ A + G DL VL++ + A ++A ++ Q G A Sbjct: 31 KIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVVLDSQ--NDPAKERANVEDLIQLGVIA 88 Query: 106 ILLGSSTTSFPDLQKQVAS---LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 +L+ + + +VA+ +PVI L + ++ S + + G Y++ Sbjct: 89 LLINPTDSDAVVKTVEVANKSNIPVITLDRQANGGKITSHIASDNIKGGEMAAEYVLDKF 148 Query: 163 HGK--PLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEM 219 + P+NV+ + G A +++ EGF + + I D D + +++ + Sbjct: 149 KDEKGPINVVEIQGIPGASATRDRGEGFHNIMDKNDKFNFISIQAADFDRQKGLQVMENI 208 Query: 220 LERHPEIDVVAGTAIAAEAAMGEGRNLKT---PLTVVSFYLSHQVYRGLKRGRVIMAASD 276 ++ +P I VV A E A+G + +K V+ F + + + + Sbjct: 209 IQANPNIQVVF--AHNDEMALGAVKAIKASGINALVIGFDGNDDAKDSIDANEMTAIIAQ 266 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTP 311 Q G L VE A + +G+S+ + ++ + V T Sbjct: 267 QPDLIGALGVELANKIYKGESIKNKIAADLKVYTK 301 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 140/336 (41%), Gaps = 24/336 (7%) Query: 1 MRVLLFLLLSLFMLP------AFSADNLLRWHDAQHFTVQAST-PLKAK----RAWKLCA 49 M+ +L LLS +L A N + QAS P +A + + Sbjct: 1 MKKMLACLLSFTILASTLTGCTVGASNATAAENQAPAETQASNEPAQAADPSVKTYNFVF 60 Query: 50 LYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL 108 + S++ S+ LS+ G + AA +++K + + Q ++Q GA+AIL+ Sbjct: 61 IVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQLVEQAITDGADAILI 120 Query: 109 --GSSTTSFPDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK 165 ST P ++K A +P+ V + +GV + +GY+ G L + G Sbjct: 121 TPADSTGIVPAIEKANAAGIPIATPNTKAYGGDVLTWIGVDNYTVGYELGTALCEALEGT 180 Query: 166 PLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHP 224 V+L+ G S E V+G+ A P + ++D D + E +++ L+R+P Sbjct: 181 G-KVVLIEGTAGNSTSTERVDGYLDAFKNYPGIELLDSQPADFNREKGMTVMENFLQRYP 239 Query: 225 EIDVVAG-----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMV 279 EID V T A EA GR+ + V+F + + + G +++ + + Sbjct: 240 EIDGVGSINKDMTMGAIEACKAVGRD--KEMVQVTFDVDNDCLDAIDAGDILITGAQEEK 297 Query: 280 WQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 Q A+ + G V+ P+ ++T N + Sbjct: 298 SQIANAIYACLLACNGYKVAPEQYIPMTLVTKDNTN 333 >UniRef50_C6CXU6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXU6_PAESJ Length = 330 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 68/327 (20%), Positives = 136/327 (41%), Gaps = 14/327 (4%) Query: 1 MRVLLFLLLSLFML-PAFSADNLLRWHDAQHFTVQAST-PLKAKRAWKLCALYPSLKDSY 58 +R FL + LF+L AFS+ + H++ S+ + K L + + Y Sbjct: 2 LRTNKFLYIILFVLFIAFSSCAVYYAGKGMHYSNNISSGNVIDKPQLHLVLISQEYDNPY 61 Query: 59 WLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL-GSSTTSFPD 117 W + G +EAA++ G++L+ L + + ++ + I+ G F Sbjct: 62 WRLVQQGAREAAQQKGIELEYLGP-ARADVKEHIKILEMAIASKVDGIITQGLEENEFTP 120 Query: 118 LQKQVA--SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 + + A +P+I + + + + VG + GY GR L+ + G+ V L+ G Sbjct: 121 IINEAARMGIPIITVDSDAPHSKRVAYVGTDNYAAGYMAGRELIAKSAGR-AEVALITGS 179 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 A K+ V GF+ A+ P + I+DIA + + +++PEID GT+ Sbjct: 180 FTASNQKDRVRGFKDAVKTYPGIHIIDIAESNISRIQSAASAYTLAQKYPEIDTFVGTSA 239 Query: 235 AAEAAMGE------GRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 + + LKTP+ +++F + + +G + Q G +V Sbjct: 240 LDGLGIAQMLKEMGSETLKTPIRIIAFDDLPETLTLINQGVIESTIVQQPFIMGRESVNL 299 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNAD 315 + L+G+ + + + V+ ++ Sbjct: 300 LMDYLKGEKIVTVYNTDVKVIHREDLT 326 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 207 bits (527), Expect = 4e-52, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 125/279 (44%), Gaps = 12/279 (4%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 R K+ + +L + +++SL G ++ ++ G +L VL++ + A +++ I+ Q G Sbjct: 32 REKKIGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVLDSQ--NDPAKERSNIEDLIQGG 89 Query: 103 AEAILLGSSTTSFPDLQKQVAS---LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 +++ + + QVA+ +PVI + + +V S + + G +++ Sbjct: 90 ISVLIVNPTDSDAVINSVQVANKANIPVITVDRQANGGEVVSHIASDNIKGGELASSFII 149 Query: 160 QWAHGK-PLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQ 217 K + V+ + G A ++E +GF I S ++++ + D ++++ Sbjct: 150 DELKNKKDIKVVELQGIPGASATRERGKGFHNIIDKKSNLKLISSQAANFDRAQGLSVME 209 Query: 218 EMLERHPEIDVVAGTAIAAEAAMGEGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMAA 274 +++ + D V A E A+G + LK + VV F +++ + Sbjct: 210 NIIQAQSDFDAVF--AHNDEMALGAAKALKTANKKIIVVGFDGDEDAKTAIEKSEISATV 267 Query: 275 SDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 + Q G ++E A++ GQ++S N+ + ++T + Sbjct: 268 AQQPALMGSTSIETAVKISNGQNISKNIPVKLRLITKNS 306 >UniRef50_A9KK42 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KK42_CLOPH Length = 320 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 69/334 (20%), Positives = 135/334 (40%), Gaps = 33/334 (9%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 ++++++LL + ++ S N K + + + S K ++W S Sbjct: 6 KIVVWILLGVMLITLVSCSN------------------KDNKKHYVAMITKSTKSAFWQS 47 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQ 121 + G AA Y + + Q I Q + GAEA++ + + + Sbjct: 48 VFAGASAAATEYNLSISYAGPELEEDYEYQNDLIYQAIEDGAEAVIFSAVDYNANAKAIE 107 Query: 122 VA---SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 A L VI + + +++ QV R+G + G G + + K +++ ++ N+ Sbjct: 108 DAAKKGLKVIIIDSDVNSNQVTCRIGTDNYAAGCMAGEAALASSEEK-IHIGIVNYDINS 166 Query: 179 GGSKEMVEGFRAAIAGSPVRIVDIALGD--NDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 ++ +GFR ++ R++DI + + E R +++LE HPEI+V+A Sbjct: 167 ANGQQREDGFREIVSK-DSRVIDIVTINVVSTTEDARKGTKQLLEEHPEINVIA--TFNE 223 Query: 237 EAAMGEG-----RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 ++G G NL TVV+F + L+ G V G L VE+ Sbjct: 224 WTSLGVGWAIRDLNLADETTVVAFDSNVVSVGMLETGEVDALIVQNPYAMGYLGVEKVAE 283 Query: 292 QLQGQSVSD-NVSPPILVLTPKNADREHIRRSLS 324 ++GQS+ + ++T N ++ L Sbjct: 284 LIRGQSIEKGTIDTSTTLITRDNMYDAEYQKILF 317 >UniRef50_A4IT20 ABC transporter sugar-binding protein n=9 Tax=Bacillaceae RepID=A4IT20_GEOTN Length = 337 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 64/323 (19%), Positives = 125/323 (38%), Gaps = 15/323 (4%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTV-QASTPLKAKRAWKLCALYPSLKDSYWL 60 R+ +SLF+ A S W+ + V + T KAK + + L + YW Sbjct: 7 RLFYAGGISLFIGSA-SLTTYCAWNVYMYSGVGEEKTLAKAKDTYHFVLVPEELDNDYWR 65 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL-GSSTTSFPDLQ 119 + G + AAR VDL+ + + + + + + I+ G + F + Sbjct: 66 LVEKGAKAAARELDVDLEYIGPR-QANIDEHLRILKKAAAAKVDGIITQGLTEAEFVPVI 124 Query: 120 KQV--ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 ++ ++PV+ + +G + G+ GR LV+ G +NV ++ G Sbjct: 125 NEIVDKNIPVLTIDTDAPTSWRVGYIGTDNYYAGFIAGRALVEDTQGM-VNVAIITGSLT 183 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 A ++ V GFR A+ +RIV + +L++HPE++ GT+ Sbjct: 184 AVHQQQRVRGFRDAVKNEKRIRIVAVEESHITRVQAAEKTYTILKKHPEVNAFYGTSALD 243 Query: 237 EAAMGEGR-----NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 A+G R + + ++ F + L++G + + G AV+ Sbjct: 244 --AIGIARVVEQFHREQETYIIGFDTLPETIEYLQKGTIEATVVQEPYEMGYRAVKMMAD 301 Query: 292 QLQGQSVSDNVSPPILVLTPKNA 314 + G V + V+ ++ Sbjct: 302 IVAGHDVPAITNTETKVIRKEDL 324 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 201 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 131/324 (40%), Gaps = 16/324 (4%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + L + + + +A N + + AK + + + +++ Sbjct: 8 KTLAVVASATLLCAGLAACNRDSGGNNATGDHTTTGSASAK---TITFALSTQANPFFVQ 64 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG--SSTTSFPDLQ 119 + Q+ A G+ + +A ATQ Q+ G +++ S P +Q Sbjct: 65 MRESAQKKADELGLAINFQDAA--DDSATQSNQLANAAASGTGVVIINPTDSDAMAPAVQ 122 Query: 120 KQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 + V +PV+ + A++ V S + G Q + L +G+ +L++ G + Sbjct: 123 QLVDEKIPVVAVDRAVNNANVASYIASDNETGGKQAAKVLSDAINGEG-EILVLQGKTGS 181 Query: 179 GGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 S+E +GF + +P +++V + + ++ +L+ HP + + A E Sbjct: 182 SASRERGKGFDEGLKDNPNIKVVAKQTAEFERAKGLDVTTNLLQAHPNVKAIF--AENDE 239 Query: 238 AAMGE----GRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL 293 A+G G + V+ F + + +K GR+ + + Q V E AV +A + L Sbjct: 240 MALGAIEALGSKAGKDVKVIGFDGAEDALKAIKDGRMYASIAQQPVKMAEQAVIEASKLL 299 Query: 294 QGQSVSDNVSPPILVLTPKNADRE 317 +G++ + + ++ T +N D+ Sbjct: 300 KGETATKKMQVEVVAATKENVDKF 323 >UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J484_9BACL Length = 329 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 56/293 (19%), Positives = 126/293 (43%), Gaps = 12/293 (4%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 ++ + + + + YW + G + AA+ + V L + + + Q +++ + Sbjct: 37 QQIYDVDMIVKMDRGDYWKTTKLGAEVAAKEFNVRLNFVAPENENDVEGQIRLMEEAIER 96 Query: 102 GAEAILLGSSTTSFPDLQKQVA---SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 +AI+L +S +PVI + + + + +VK+ VG ++ G + L Sbjct: 97 RPDAIILAASDYEALGQVTDRTSYYDIPVISMDSEVASTKVKTFVGTNNYEAGQKAAERL 156 Query: 159 VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQ 217 V G + ++ A + + EGF +A P V +VDI +D + L Sbjct: 157 VDLT-GPVSEIGIINFVKGARNANQREEGFLDYVARFPDVHVVDIQYCGSDEYLAYKLTA 215 Query: 218 EMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIM 272 +ML+R P ++ + +++AE+++G GR + + +++F ++ L+ +V Sbjct: 216 DMLKRFPNLNGIV--SLSAESSIGAGRAVDELGYGGKVKMIAFDNPPEMLELLQEEKVQA 273 Query: 273 AASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 G +AV A++ +G+ + D + ++ N ++ L P Sbjct: 274 MVVQNPFNNGYMAVAAAVQAARGEKLEDRIPTDTKLIDLNNMLWPENQKLLFP 326 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 199 bits (507), Expect = 8e-50, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 123/329 (37%), Gaps = 12/329 (3%) Query: 4 LLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLN 63 + LLL L + A + A++ K+ + + +W S+ Sbjct: 1 MKKLLLFLVVFAAVLSCGKSEDKKDAGAGKSANSG----DKIKIELVSKGYQHEFWRSVE 56 Query: 64 YGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI---LLGSSTTSFPDLQK 120 G ++A GV++ + +++ Q ++ A+ L + + Sbjct: 57 AGAKKAGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALAVVAKKA 116 Query: 121 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG 180 A +PV+ + + S + G G L + +GK V ++ Sbjct: 117 MDAKIPVVTFDSNVKGDITSSFIATDNKVAGAMAGEQLAKLINGKG-KVAIVSHNPGTTT 175 Query: 181 SKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT---AIAA 236 + E GFR A+A P ++I++ D D + +++ +P+I + GT +I Sbjct: 176 AIEREAGFREALAKYPDIKILNTQFSDGDKSKALAITLDIINANPDIAGIYGTNEPSIFG 235 Query: 237 EAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQ 296 A E + L + +V S + + L++G + G V+Q + +G+ Sbjct: 236 IAKGVEEKGLTGKVVLVGIDSSEDLAKFLEKGVISGLVIQDPYNMGYQTVQQLYKLSKGE 295 Query: 297 SVSDNVSPPILVLTPKNADREHIRRSLSP 325 V + +++T +N + I + + P Sbjct: 296 KVEKRIDTGAILVTKENINNPDITKKMFP 324 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 131/326 (40%), Gaps = 31/326 (9%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 R+L+ + F+L A + Q + + + +++ P+ D + Sbjct: 6 RILIIFAATCFLLTACA---------------QKKSIVYKSKKYRIGLSIPASDDVFRNK 50 Query: 62 LNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK 120 + M+ A+ DL V+ A G A Q++QI AIL+ T Sbjct: 51 IINAMENEAKNLPDTDLVVVNAKG--DPARQKSQISNLVAQKCNAILVLPVDTLLSSDYT 108 Query: 121 QVA---SLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 Q+A +P+I + N + + + VG G Y V+ +GK NV+++ G Sbjct: 109 QIANDSGIPIISVNNFLKNQDDAAAYVGSDSITSGIMEAEYAVKQLNGKG-NVVILKGEP 167 Query: 177 NAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 N + + EGF+ + P ++I+D GD + + + ++ + D + Sbjct: 168 NHETAIKRTEGFKQVLQNYPEIKIIDEQYGDWKRTLGMQITENWIKNGTKFDAILAN--N 225 Query: 236 AEAAMGEGRNLKTP-----LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 E A+G LK + V + + LK G + + QG A++ A Sbjct: 226 DEMAIGAIMALKENNLINNVFVGGIDATPDALKLLKEGSLKVTVFQNAAGQGSEAIKAAY 285 Query: 291 RQLQGQSVSDNVSPPILVLTPKNADR 316 + ++G+ ++ + P ++ P +AD+ Sbjct: 286 KLVKGEKINKKIFVPYELVVPNDADK 311 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 117/290 (40%), Gaps = 12/290 (4%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 + + S YWLS+ G ++AA+ G ++ + + ++ + Sbjct: 35 NIALIVKSTDSEYWLSVKAGAEKAAKEAGANIIFKGPATEQDIQGEVNIVEDAINQKVDG 94 Query: 106 ILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 I+L +S T P A +P++ + + +D+ +V S + + Q + Sbjct: 95 IVLAASDTKALIQPVENAINAKIPLVTVDSGVDSDKVASFIATDNEKAASQAADVCAELI 154 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEMLE 221 GK V ++ + + +GFR + S + ++ +D + +++L Sbjct: 155 -GKSGKVGVVNFVPGVSTAVQREKGFRDGMSKHSGIELLKTQYSQSDKSKAMAITEDILT 213 Query: 222 RHPEIDVVAGTAIAAEAAMGEGRNLKTP-----LTVVSFYLSHQVYRGLKRGRVIMAASD 276 +P++ + A +A+G + LK + VV+F +G++ G + Sbjct: 214 ANPDVKAIF--AANNRSALGVAQALKGKGVAGKVKVVAFDADPDEIKGIEDGSITALIVQ 271 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPG 326 GE V+ + ++G++V + + ++T +N + +++ L P Sbjct: 272 NPYKMGEEGVKNVLALMKGETVEKRIDTGVTIVTKENINDPEVQKVLYPE 321 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 115/283 (40%), Gaps = 11/283 (3%) Query: 36 STPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI 95 ST A + + ++ + +++++ G + A G L L++ + + + A + Sbjct: 21 STSFSASAQDAIAIVLSTMNNPFFVTMKDGAEAKAAELGYKLIALDSQ--NDPSKELANV 78 Query: 96 DQCKQWGAEAILLGSSTTSFPDLQ---KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGY 152 + G +AIL+ + A++PV+ L + S + G Sbjct: 79 EDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDRTAAHGDIVSHIASDNIAGGE 138 Query: 153 QPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQ 212 G ++ Q GK V+ + G ++E EGF A+ + ++ D D Sbjct: 139 LAGEFIAQQL-GKNAKVIQLEGIAGTSAARERGEGFSNAVTANNFELLSSQPADFDRSKG 197 Query: 213 RNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK---TPLTVVSFYLSHQVYRGLKRGR 269 N+++ ML + ++ V A E A+G R ++ + V+ F + + ++R + Sbjct: 198 LNVMENMLAANGDVQAVF--AQNDEMALGALRAIEAAGKDILVIGFDGTDEGIAAVRRQQ 255 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPK 312 + + Q G A+ A R L+GQ V ++ + ++T Sbjct: 256 LSATVAQQPELLGATAIMTADRILKGQVVEKSIPVALKIITQT 298 >UniRef50_C8STD2 Monosaccharide-transporting ATPase n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8STD2_9RHIZ Length = 329 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 122/318 (38%), Gaps = 18/318 (5%) Query: 31 FTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLAT 90 A A+ A K+ A+ L + ++ ++ G++E A+ GV++ V A Sbjct: 14 LATIAPVSAHAEDAAKVAAIVKGLDNPFFQTMQKGIEEQAKASGVNVSVQAAANMGDATG 73 Query: 91 QQAQIDQCKQWGAEAILLGSSTTSFPD---LQKQVASLPVIELVNAIDAPQ-------VK 140 Q ++ + L+ + S + P++ + + IDA Q V Sbjct: 74 QADRLTAMAMQDFDCYLVNPISVSNLVQALVPVAQKKKPIVNIDSTIDAEQAKAAGFAVS 133 Query: 141 SRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIV 200 + +G G G +++ K V L+ G GS ++GF+ A+ G + +V Sbjct: 134 TYIGTDNVAAGALAGEEMLKLV-PKGSKVALIAGIVGDVGSNARIKGFKQAVEG-KLEVV 191 Query: 201 DIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK---TPLTVVSFYL 257 + D D E ++L HP++ A A+G R ++ + V+ Sbjct: 192 VMVSADWDREKALTAATDILAAHPDLAGFF--AANDIMALGVERAVQTSGKDVKVIGLDG 249 Query: 258 SHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 + + G + + G + +E +G+ + NV P+L++ NA Sbjct: 250 IVDALKSIAAGELSATVAQYPYVVGAMGLEACAVAAKGKELPANVPAPVLLINKDNA-EA 308 Query: 318 HIRRSLSPGGFRPVYFYQ 335 I+ PGG P F + Sbjct: 309 SIKNFPRPGGDYPDPFRE 326 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 120/304 (39%), Gaps = 14/304 (4%) Query: 27 DAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYS 86 D A + + + + + + + +++ + G+Q+AA +G++L + +A Sbjct: 48 DTSAEAENAGSEEGSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYITDAQ--D 105 Query: 87 QLATQQAQIDQCKQWGAEAILL--GSSTTSFPDLQK-QVASLPVIELVNAIDAPQVKSRV 143 Q ++ +AI++ S ++ A +PV + + +V S + Sbjct: 106 DPTIQMKDVENLITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDREANGGEVISHI 165 Query: 144 GVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDI 202 G + G G+YLV GK ++ + G ++ +GF + +P + IV Sbjct: 166 GYDAIKSGRMAGQYLVDTLGGKG-KIVEIQGIMGTNVAQNRSQGFNEVMKDNPDMEIVAC 224 Query: 203 ALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYL 257 + D D ++++ +L+ +PEID + A E +G ++ + + Sbjct: 225 QVADFDRAKGMSVMENILQANPEIDGLY--AANDEMLLGALEAMEAAGRTDEIVKIGCDA 282 Query: 258 SHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 +K G+V ++ + G+ + A L+G+ V V ++T D Sbjct: 283 IDDTLDAMKAGKVDATIAEPPFFLGKAILNTAYDYLEGKQVEPYVILDNQLVTQDTVDSL 342 Query: 318 HIRR 321 + Sbjct: 343 VTKE 346 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 128/316 (40%), Gaps = 19/316 (6%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 +++ L+ + + T QA + + + ++++ Sbjct: 3 KLMKSLMAGALVFAVAACSKQ------GPETAQAPDAGTDGGKPAIGLAVSTQSNPFFVT 56 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDL 118 L G +E A++ G+ L ++A A Q A I+ Q + IL+ + + Sbjct: 57 LKKGAEEEAQKQGLTLITVDAQ--DDPAKQIASIEDLIQKKVKVILVNPTDSDAVVGAVK 114 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 A +PV+ L +++ +V S V G YL++ + +V+ + G A Sbjct: 115 AANAAGIPVVTLDRSVNGGEVASHVASDNVAGGKMAAEYLLEKIGNQG-DVVELEGIPGA 173 Query: 179 GGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 ++E +GF I V++V D D ++++ +L+ + + V A E Sbjct: 174 SAARERGQGFHDVIDQAKDVKVVGRQPADFDRAKGLSVMENILQANKNVKGVF--AHNDE 231 Query: 238 AAMGEGRNLK----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL 293 A+G + L+ +TVV F + +K G++ + + G+ AV+ A + + Sbjct: 232 MALGAVQALEAAGMKDVTVVGFDATDDAVNAVKAGKMSATVAQKPKLIGKTAVDAAKKII 291 Query: 294 QGQSVSDNVSPPILVL 309 GQ V ++ P+ ++ Sbjct: 292 DGQPVDKSLPVPLDLV 307 >UniRef50_A1FB23 Tmao reductase system periplasmic protein tort (Fragment) n=1 Tax=Vibrio cholerae 2740-80 RepID=A1FB23_VIBCH Length = 232 Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 92/230 (40%), Positives = 138/230 (60%), Gaps = 10/230 (4%) Query: 116 PDLQKQVASLPVIELVNAI-----DAPQVKSRVGVPWFQMGYQPGRYLV-QWAHGKP-LN 168 DL S+PV VN + +K VGV W+ MG+ G YL + G + Sbjct: 2 DDLAHYTRSVPVFATVNQLRLNEQQQEHLKGEVGVDWYWMGFYAGEYLARKHPKGSGEIK 61 Query: 169 VLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDV 228 ++++PGP ++GG+K +++G AI S VRI +I DND E+QRNL+Q+ LE+ P++ Sbjct: 62 IVVLPGPASSGGTKPVLQGLEEAIRHSDVRITEILWADNDKELQRNLIQQALEQ-PDVRY 120 Query: 229 VAGTAIAAEAAMGEGRNLK--TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 + G+A+A EAA+ E R+L + +++ YLSH VYRGL RGRV A +DQMV QG L+V Sbjct: 121 LVGSAVAIEAAISELRSLNKSDQIGLIATYLSHGVYRGLLRGRVEFAPTDQMVEQGRLSV 180 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQH 336 QA L+ + + +P I LTPK+ +++ I SLSP +RPV+ + Sbjct: 181 RQAAAFLRNKPYATQQAPKIEALTPKHLEKKIIADSLSPSEYRPVFQVKA 230 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 12/296 (4%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 ++A +++ L SYWL++ G + AA+ G ++ + +A Q I+ Sbjct: 25 VQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNVINDF 84 Query: 99 KQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPG 155 +AI++ ++ + P + A +PVI + + I+A S + + + Sbjct: 85 VNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINADFPISHIATNNKEAAKKAA 144 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRN 214 L GK V +P A S GF+ I+ + +V + +D Sbjct: 145 EVLANII-GKKGEVACIPFVAGAATSIARENGFKEGISNYKNIDLVAVQYSQSDYATAMK 203 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGR 269 + + +L HP + + A A+G R LK + +V F + +K G Sbjct: 204 VTENILTAHPNLKGIF--AANEAGAVGAARALKARGKTADVILVGFDAAQTEIDAMKEGI 261 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 + + G V+ A+ L+G+ V + ++V TP N + + + L P Sbjct: 262 IDALIVQRPYMMGYEGVKNAVAALEGEEVEKLIDTGVVVATPDNMNDPEVYKVLFP 317 >UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic component n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK7_ANOFW Length = 332 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 119/278 (42%), Gaps = 8/278 (2%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 + + + YW + G +EA + Y V+++ + + + Q +++ + Sbjct: 54 HVILISQEFDNPYWRKIEQGAKEAGKNYDVNIEYIGP-LRTSVDEQVKLLEKAIASRVDG 112 Query: 106 ILLGS--STTSFPDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 I++ + P + K + ++PVI + + + VG F+ G G+ +V Sbjct: 113 IIVQNLKDEAFIPLIDKAISRNIPVITIDADAPKSRRIAYVGTNNFEAGQLLGKAVVSRV 172 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLE 221 G+ + +M G D + + ++GF + IA P +++V +A + ++ML Sbjct: 173 EGE-RELGVMIGTDTSENQRLRLQGFLSVIAEHPRLKVVSVASSNISRIQASIQAEQMLR 231 Query: 222 RHPEIDVVAGT-AIAAEAAMGEGRNL-KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMV 279 +HP I V+ GT A+ A +NL + + + F + +++G ++ + Sbjct: 232 KHPHISVMVGTSALDAIGIRMATKNLHRQDIQIFGFDDVEETIEAIQQGDIVATVVQKPY 291 Query: 280 WQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 G AV+ + L G+ + I V+ +N +E Sbjct: 292 DMGYSAVKLMVEHLSGKQIQKEHFTAIEVIDRQNVQQE 329 >UniRef50_C6J068 ABC-type sugar transport system n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J068_9BACL Length = 330 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 57/318 (17%), Positives = 124/318 (38%), Gaps = 9/318 (2%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 +++ +++ +++ F+ + + Q P + + + + YW + Sbjct: 14 IMICIVVLVYLFIGFARYSGKIGSIVKELQGQ---PASGEPRYHIVLIEQERYHPYWEMV 70 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG--SSTTSFPDLQK 120 G EAA +YG+D++ + + Q +++ +AI++ + P + K Sbjct: 71 EKGAAEAAEKYGIDIEFTGP-VRNNMEEQLNLLEKAIAARVDAIIVQGLNEERFTPVIDK 129 Query: 121 QVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAG 179 V +PV+ + Q + VG G + GR +V+ G +++ D A Sbjct: 130 AVRRGIPVVTIDTDAPNSQRLTYVGTDNLAAGERLGRLVVETTGGIGKIGVIIG-SDQAA 188 Query: 180 GSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEA 238 + ++G + +A + IVD+ + ML HPEI ++ GT+ Sbjct: 189 NQLQRLDGLKKIVAEHEGLEIVDVRSSNISHMEAIQQAANMLRNHPEITIMVGTSATDAL 248 Query: 239 AMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSV 298 + + + LT++ F + +++G + + Q GE AV GQ++ Sbjct: 249 GVLQAAKNRDDLTIIGFDNQKETLEAIRKGEIEATVAQQPFLMGETAVRLLYEHFGGQAL 308 Query: 299 SDNVSPPILVLTPKNADR 316 + VL N + Sbjct: 309 KKAYFTEVKVLNAHNVEE 326 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 196 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 59/329 (17%), Positives = 127/329 (38%), Gaps = 35/329 (10%) Query: 18 SADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVD- 76 S + D H + Q + A + W++ L+ + D +W + G+Q A+ G+ Sbjct: 55 STYQQCQPFDVDHLSHQGT----ATQPWQIAYLFKTRSDPFWQQMEQGVQTVAQELGIKT 110 Query: 77 -LKVLE--AGGYSQLATQQAQIDQCKQWG-AEAILLGSSTTS--FPDLQKQVA-SLPVIE 129 +K E + Q + I + + +++ + P ++K + VI Sbjct: 111 LVKFTEEKPNTLGDVKKQISTILELIDNNDLDGLVIAPEDSIQLVPIIEKATQQGIKVIV 170 Query: 130 LVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA-----HGKPLNVLLMPGPDNAGGSKEM 184 + ID Q+ + V F+ G G +++Q +N+L++ G + + E Sbjct: 171 IDTPIDTDQILTFVTFDNFEGGQILGEWVIQKLTQSSRRNNKINILILEGSLHEENTIER 230 Query: 185 VEGFRAAIA----GSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 +GF + + I+D+ D + + + + Q LE+ P IDV+ A + A+ Sbjct: 231 RQGFLEGLKRANKNYSLEILDLKSADWETKKAKMITQAWLEKFPTIDVIM--AADDQMAV 288 Query: 241 GEGRNL----KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQ 296 G + K+ + + F + +K G++ + Q L + I L+ + Sbjct: 289 GASEAVQEANKSGIIITGFDGTPYGLNAIKTGQIDATINQLPRTQISLITQLMINSLEKE 348 Query: 297 S--------VSDNVSPPILVLTPKNADRE 317 + + L++T N + Sbjct: 349 QTTLPLCQLIGQEQTENSLLITQDNINEA 377 >UniRef50_C5RJT9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJT9_CLOCL Length = 330 Score = 196 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 130/334 (38%), Gaps = 30/334 (8%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 + + LL+S+ + P F Q + ++ + + + D YW ++ Sbjct: 13 IFIALLISIIVFP---------------FYYQKRISTQNEKIKNISLILLNQSDDYWKNV 57 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST---TSFPDLQ 119 G + AA+ + + L ++ + QQ I++ +A+LL S+ P Sbjct: 58 KLGAETAAKEFDIKLNIVAPEDGGDITIQQNLINEAVAMKVDALLLVPSSFQELVEPVEA 117 Query: 120 KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAG 179 + V+ + + ++ ++ + G G LV A V + G D Sbjct: 118 AVNKGIIVMTVDSKVNTAKIACCIATDNLSAGKSAGEKLVSLARMNS--VAAIVGFDKKT 175 Query: 180 GSKE--MVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 GS E +G + ++++D D + +E++ + +I V+ A+ Sbjct: 176 GSNEFDRYKGIKEVTKDYKEIQVIDRWCDIKDSNGAERIAKELISNNEDISVII--ALNY 233 Query: 237 EAAMGEGR-----NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 +A++G R LK + VV+F +Q + ++ G + G LAV+ A+ Sbjct: 234 KASIGVARAIEKLGLKGKIKVVAFDGDYQEVKYMEDGTIQSVVIQSPFSMGYLAVKNAVL 293 Query: 292 QLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 +LQG+S+ + V+ ++ L P Sbjct: 294 KLQGKSIPRYIESGFTVIDNDAIYLPENQKILFP 327 >UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacillales RepID=C6D2L3_PAESJ Length = 332 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 122/302 (40%), Gaps = 14/302 (4%) Query: 36 STPLKAKRAWKLCALYPSLKD--SYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQA 93 + + ++ + + +W L G+++AA +G ++ V+ +++ TQ Sbjct: 29 AASQRTEKTVDIIVTVKAKSSAIDFWKVLITGVEDAANEFGANVTVIGPPSETEIDTQTE 88 Query: 94 QIDQCKQWGAEAILLGSSTTS--FPDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQM 150 Q+ Q + +AI++ ++ + P Q+ V A + +I + + I++ S + Sbjct: 89 QLKQAIRQKPDAIVMAATDYNRLVPVAQQIVKAGIKLITVDSRINSDDALSFIATDNIAA 148 Query: 151 GYQPGRYLVQWA-HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDND 208 G + G + + V +M E +G R + G + + + Sbjct: 149 GEKAGEEMAKLLPESSSSKVAIMSYVYGTSSQLEREKGVRQWLEGHSHIEVASTLYSEGR 208 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYR 263 +E L +E+L P I + G + + +G GR ++ + +V F S + Sbjct: 209 LEKAYELTKELLSEDPGIKGIVG--LNEPSTVGAGRAIRDLGLSGKVKLVGFDSSVDEVK 266 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSL 323 ++ G + + G L+V+ AI ++G+ V + +++ N E ++ L Sbjct: 267 LIEGGVLQATIVQKPYNMGYLSVKTAIEAVRGKKVPKLIDTESVIINKDNMYTEQNQKLL 326 Query: 324 SP 325 P Sbjct: 327 FP 328 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 104/296 (35%), Gaps = 11/296 (3%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 ++ + +W S+ +G ++A G + + Q + Sbjct: 139 EKELHFAVIPKGTTHIFWQSVKHGAEQAGEEIGAKITFRGPSKENDRDEQINVVQGFLNA 198 Query: 102 GAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAP--QVKSRVGVPWFQMGYQPGR 156 + ILL P + A +PV+ + ++ S V F+ G G Sbjct: 199 RVDGILLAPLDADALVRPVKEASRAGVPVVIFDSGLNTDPGDFVSYVATDNFEGGKLAGE 258 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDI-ALGDNDIEIQRN 214 + K +V+L+ + + + EGF +IA +R++ E + Sbjct: 259 AMANALGEKGGDVILLRYEQGSESTHQREEGFLYSIAEYSNIRVLSSDQYAGTTTESAID 318 Query: 215 LLQEMLERHPEIDVVAGTA--IAAEAAMGEGRNLK--TPLTVVSFYLSHQVYRGLKRGRV 270 Q +L R + T AE A+ R K + +V+F S + L G V Sbjct: 319 KAQALLNRFGDEADGICTVCEPTAEGALRALRERKLAGKVKLVTFDSSDSLRESLSAGEV 378 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPG 326 V G AV+ L+G++ + + V T KN D E+I R L P Sbjct: 379 NAIVLQDPVAMGYQAVKTMAAHLRGETPEQFIDTGVFVATAKNQDDENIARLLRPA 434 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 194 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 65/331 (19%), Positives = 132/331 (39%), Gaps = 18/331 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQ------HFTVQASTPLKAKRAWKLCALYPSL 54 M+ L+ +L++ ML F+A + ++ T T A + + SL Sbjct: 4 MKRLVAMLVAAIMLITFAACSSDTSKNSSEESKSSDTTKVTETSKPADKKIVVGMTLYSL 63 Query: 55 KDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT- 113 K+ + + L+ ++ A GV+LK+ + G TQ Q++ G +AI+L Sbjct: 64 KNEFTVRLSNAAKKKAAELGVELKIYD--GNYDPNTQINQVETMISDGVDAIILNPQDAK 121 Query: 114 --SFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLL 171 + + A++PVI + +D+ ++ S VG G + + GK N+++ Sbjct: 122 ACAVAVDKAAAANIPVIGVNTRVDSEKLTSYVGSKDVYAGELEMQAIADKIGGKG-NIVI 180 Query: 172 MPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA 230 + GP E EG + + P ++++ + +++ L+ +ID V Sbjct: 181 LDGPLGQSAQLERSEGIQNVLKKYPDIKVLAEKTANWSRSEAMTVMENWLQAFDKIDAVV 240 Query: 231 GTAIAAEAAMGEGRNL---KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVE 287 A E A+G + + K + + +++G +I QG A+E Sbjct: 241 --AENDEMALGARKAIEAKKLDIPTIGVDGITDALDAVEKGTLIATIFQDGAGQGSKALE 298 Query: 288 QAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 A+ + +G++V +T N Sbjct: 299 IAVAKAKGENVDKEYWIDFEPVTKDNVAEFK 329 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 59/299 (19%), Positives = 115/299 (38%), Gaps = 19/299 (6%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 A K+ +L +++++ L G+++ A+ G DL A G Q Sbjct: 63 AAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANG--DAQQQVNDAINLL 120 Query: 100 QWGAEAILLGSST--TSFPDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 G A++L P ++K A ++PV L D +V S V +G + Sbjct: 121 SQGVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGKVTSFVASDNVALGQTAAK 180 Query: 157 YLVQWA----HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEI 211 ++ NV+ + G + + +GF IA P +++V G D E Sbjct: 181 WIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEIAKYPDIKVVARQEGAFDQEK 240 Query: 212 QRNLLQEMLERHPEIDVVAG----TAIAAEAAMGEG-----RNLKTPLTVVSFYLSHQVY 262 N + +L+++P+ID V G + AE A+ + K + V+ + Q Sbjct: 241 SLNAMTNILQKYPQIDAVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGADGTAQAL 300 Query: 263 RGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 ++ G+ S + +++ + V N + P L++ N D + ++ Sbjct: 301 SAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAWPTLLIDKSNIDSDATKK 359 >UniRef50_UPI0001973330 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973330 Length = 325 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 124/301 (41%), Gaps = 13/301 (4%) Query: 34 QASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQA 93 A+ + + +++ + S + +++ S+ G AA Y V L ATQ Sbjct: 25 TAAHMSRRQERYQVAMIVKSTESAFFQSVFAGAGAAATEYNVSLITEGPESEEDYATQNE 84 Query: 94 QIDQCKQWGAEAILLGSSTTSFPDLQ---KQVASLPVIELVNAIDAPQVKSRVGVPWFQM 150 I + + GA+A+++ + + +PV+ + + +++ VK R+G + Sbjct: 85 MIYKAVENGADALVISAVDFNKNAEAVDWAAAKGIPVVVIDSDVNSSAVKFRIGTDNEEA 144 Query: 151 GYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDI 209 G R + G+ L + ++ +N ++ +GFR S V+ + + I Sbjct: 145 GRMAARAALDGTDGE-LFIGIVNFDENTANGQQREQGFREEAKKDSRVKEIVTINVPSAI 203 Query: 210 EIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEG-----RNLKTPLTVVSFYLSHQVYRG 264 + R + +L HPEI+V+ T ++G G N K ++VV+F + Sbjct: 204 DDTRAATKGLLSTHPEINVI--TTFNEWTSLGVGWAIRDLNKKDDISVVAFDSNAVSVGM 261 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVS-DNVSPPILVLTPKNADREHIRRSL 323 L+ G V G L VE+A L + V D + ++T +N + ++ L Sbjct: 262 LETGEVDALIVQNPYAMGYLGVEKAWEILSRRGVEGDKLDTETTLVTRENMFLDEYQKIL 321 Query: 324 S 324 Sbjct: 322 F 322 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 63/294 (21%), Positives = 110/294 (37%), Gaps = 24/294 (8%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGA 103 A + + S+ YW + G++ A + GVD K + Q ++ G Sbjct: 19 ALTIGVIGKSV-HPYWSQVEQGVKAAGKALGVDTKFFVPQKE-DINAQLQMLESFIAEGV 76 Query: 104 EAILLGSST--TSFPDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQ 160 + I + S P ++K + +PVI L +G +Q GY G + + Sbjct: 77 DGIAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKE 136 Query: 161 WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEML 220 GK V++ G A S + ++GF+ AIA S + IVDI + D +L + L Sbjct: 137 LLGGKG-KVVIGTGSLTAMNSLQRIQGFKDAIADSEIEIVDILNDEEDGARAVSLAEAAL 195 Query: 221 ERHPEIDVVAGTAI--AAEAAMGEGRNLK-TPLTVVSFYLSHQVYRGLKRGRVIMAASDQ 277 HP++D G A+ K + +V F + + + +K G + + Sbjct: 196 NAHPDLDAFFGVYAYNGPSQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQR 255 Query: 278 MVWQGELAVEQAI---------------RQLQGQSVSDNVSPPILVLTPKNADR 316 G L+V + V + + V+TP+N D Sbjct: 256 PYMMGYLSVTVLYLMNKIGVQNTLMMLPKVTVDGKVDYVIDTGVDVVTPENLDE 309 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 60/318 (18%), Positives = 125/318 (39%), Gaps = 16/318 (5%) Query: 7 LLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGM 66 + SLF + A A + + + S +++ L GM Sbjct: 22 MTASLFGCSSGQAQGGDTQPQASAAPAADAASAPQREQIVVGFSNWSRSFEFYVDLEKGM 81 Query: 67 QEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQV---A 123 QE A GV L + G LA Q Q++ G + I+L ++ + + A Sbjct: 82 QEVADAQGVKLITQDPNG--DLAAQTKQVEDFITQGVDGIVLCPIDSNAAVTEAETINQA 139 Query: 124 SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKE 183 +P++ A+ V S + G +++ + G V L+ P E Sbjct: 140 GIPLVTTDIAVAGGDVASHIASDNTLGGQLAAQFIGEQLGGTG-KVALINNP-TITSLIE 197 Query: 184 MVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG 241 GF +A + IV + G++ E ++++ +L+ +P++ V A+ +G Sbjct: 198 RETGFTDTMAQKYPDIEIVAVQSGESKREKGLSVMENILQSNPDVQGVF--AVNDMMGLG 255 Query: 242 EGRNL----KTPLTVVSFYLSHQVYRGLKRGR-VIMAASDQMVWQGELAVEQAIRQLQGQ 296 + + + + +V F + + + +K G + + + V G+ +E ++ + G+ Sbjct: 256 ALQAVQAAQRDDIVIVGFDATEEAVKYIKEGSALKASVAQNPVELGKTTMETMLKVIAGE 315 Query: 297 SVSDNVSPPILVLTPKNA 314 V N+ P+ ++T NA Sbjct: 316 QVEKNIPVPVELVTAGNA 333 >UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF94_9GAMM Length = 319 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 125/295 (42%), Gaps = 20/295 (6%) Query: 33 VQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQ 92 ++ +TP+ K+ + SL + +++ + G ++AA GV+L V + + Q Sbjct: 27 IEQATPV---DKPKVLLVMKSLVNPFYIQMEQGARQAANELGVELIVRSGTNETLVEQQI 83 Query: 93 AQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKS-------R 142 + ID+ G +A+++ + + ++ + ++ + N ID ++ Sbjct: 84 SLIDEQLAAGIDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQRAGLPAIPF 143 Query: 143 VGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDI 202 V V GY+ G+ L + A G L++ GP +A ++E +G R A+ + + +V Sbjct: 144 VSVDNEFGGYEAGKILAELA-GPDAKALIIEGPRSAINARERRDGARRALQENNIEVVAS 202 Query: 203 ALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG----EGRNLKTPLTVVSFYLS 258 + +E L Q + R+PE++V+ A A+G + + F Sbjct: 203 EVASWKLESAYALTQNVHARNPELNVIF--AANDMMALGALLYAQEHGLNDWLIAGFDNI 260 Query: 259 HQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 ++ GR+ + Q QG V A+ L ++V D V V+T + Sbjct: 261 PDARAAVREGRLAVTIDQQADRQGYQGVATAVDLLNDKAVDDVVLVKTRVITADD 315 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 122/297 (41%), Gaps = 14/297 (4%) Query: 21 NLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVL 80 NL R+ AS L AK +CA + ++++L G++E A+ ++LKV Sbjct: 3 NLKRFTAIAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLKVS 62 Query: 81 EAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAP 137 A LA Q I+ C +AI++ + P + + A++PVI + + Sbjct: 63 VA--NQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAENS 120 Query: 138 QVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPV 197 ++ S + + G G+ V+ GK V+L + ++GFR A+A + + Sbjct: 121 KIVSHIATDNYGGGVVAGKLAVKQLGGKGQVVML--SYPGISSVEARLQGFRDAVADTDI 178 Query: 198 RIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL---KTPLTVVS 254 +IV + G E ML+ +P+ D++ A + +G G + K+ V+ Sbjct: 179 KIVAVQPGKT-REESMTSTINMLQANPDTDLIF--AFGDDMMIGAGLAVTKQKSKAVVIG 235 Query: 255 FYLSHQVYRGLKRGR-VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLT 310 F + + + +I G+ A++ L G+ V ++ T Sbjct: 236 FDGMPEGIKAVDENDHIIGVVKQDADAMGKTAMKVVADYLNGKEVKSEYPIVPVLYT 292 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 59/278 (21%), Positives = 115/278 (41%), Gaps = 13/278 (4%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 + A + + +++ L M++AA GV+L V A L Q + ++ G Sbjct: 27 DDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIA--NQDLNKQISDVEDFIVRG 84 Query: 103 AEAILLGSSTTSFPD---LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 +AI+L + ++ + A +PVI + + + +V + V + G G + Sbjct: 85 VDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVEVDAHVATDNYYGGRIAGETMA 144 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQE 218 + +GK V ++ P ++ V GF+ A++ P + IV I G E N Q Sbjct: 145 KVLNGKG-QVAIIDYPVVQS-VRDRVAGFKEAVSKYPGIEIVAIQPGITRPE-ALNTAQN 201 Query: 219 MLERHPEIDVVAGTAIAAEAAMGEG---RNLKTPLTVVSFYLSHQVYRGLKRGR-VIMAA 274 +L+ HPE+D + G A A ++ + V+ F + +K+ + Sbjct: 202 ILQAHPEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIGFDGMEEARNAVKKEESFVAVV 261 Query: 275 SDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPK 312 G L +E A+R ++G+ V + + T + Sbjct: 262 CQYPGEMGRLGLETALRVIKGEKVEKEIPVLPGLFTKE 299 >UniRef50_A6BDJ9 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDJ9_9FIRM Length = 339 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 58/317 (18%), Positives = 126/317 (39%), Gaps = 22/317 (6%) Query: 5 LFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNY 64 + LL + ++ N W KAK + + + S YW+S+N Sbjct: 28 ISALLLMTVILCCGCSNHSSWQ-------------KAKDRYVVGVVTKSNTSEYWMSVNS 74 Query: 65 GMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT-SFPDLQKQVA 123 GM+ AA +Y +D+ L Q+ Q+++ +A+ + + PD ++ Sbjct: 75 GMEAAAAKYDMDVITLAPDSELDREVQEKQVEKLIDQNVDALAVAPIDSYHVPDYLDEIE 134 Query: 124 SLPVIEL--VNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGS 181 + + N + ++ +G+ + GYQ + L + K V ++ G G Sbjct: 135 KKKITAVCFDNGMVGGELP-YIGIDNHKTGYQLAQELAEQLDHKG-QVGIVAGDLKQKGH 192 Query: 182 KEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 +E VEGF + P + + + G ++++ +++++ ++P+I + T+ A AM Sbjct: 193 RERVEGFEEYMKSEPEMTVKFVESGYANLQMSEQKVRDLMGQYPQIRGIMATS--AVTAM 250 Query: 241 GEGRNLKT-PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVS 299 G LK + +V+ + ++ G+++ A+ G + G+ + Sbjct: 251 GLVDELKDTDIKIVAVDEQEDSLKAVENGQILALAAQSGYEIGYETIHYIQNLRNGKHLK 310 Query: 300 DNVSPPILVLTPKNADR 316 +LT N Sbjct: 311 KKYYLNAEILTQDNVKE 327 >UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=bacterium Ellin514 RepID=B9XK02_9BACT Length = 330 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 54/303 (17%), Positives = 106/303 (34%), Gaps = 17/303 (5%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYG-----VDLKVLEAGGYSQLATQQAQ 94 A +++ + + YW ++ G +A R VDL Q Sbjct: 23 AADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIKVDLIWKGPLREDDRDQQIQV 82 Query: 95 IDQCKQWGAEAILLGSST---TSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMG 151 ++ ++L P A +PV+ +A+ + S V ++ G Sbjct: 83 VENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFDSALKTDKYVSFVATDNYKGG 142 Query: 152 YQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDI-ALGDND 208 + Q GK NV+L+ + ++E GF + ++++ Sbjct: 143 QLAAERMGQLLEGKG-NVILLRYAVGSASTEEREAGFMDTLKSKFPNIKVISSDQHAGAT 201 Query: 209 IEIQRNLLQEMLERHP-EIDVVAGT----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYR 263 E Q +L R E++ + +A A+ + + +V F Q Sbjct: 202 RETAYQASQNLLNRFGHEVNGIFCPCEPPTVAMAKALRDIGKAGGKVKMVGFDAGSQSVI 261 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSL 323 LK G V + G L V ++ LQG+ V + + ++TP+N ++ I+ + Sbjct: 262 DLKNGDVQGLVVQNPLRMGYLGVITMVQHLQGEKVEKRIDTGVQIVTPENMEQAGIKELI 321 Query: 324 SPG 326 P Sbjct: 322 HPP 324 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 78/321 (24%), Positives = 132/321 (41%), Gaps = 28/321 (8%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + L+ L + L S P RA L + K+ ++L Sbjct: 4 KSLVLLTAGILTLSGCS-------------GTPRDVPAAGSRAVTLA--LSTEKNPFFLQ 48 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK- 120 + YG Q A G+DL VL+AG Q AQ+D G + S P + + Sbjct: 49 VRYGAQAKANELGIDLTVLDAG--DDAEVQAAQLDD-VSSGVAVVNPADSEALAPAVSQL 105 Query: 121 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG 180 +P I + I V + + + G L + + V+++ G + + Sbjct: 106 NEKGIPAITVDRTITGADVAALIDSNNTEGGAAAASVLAKAIRAQG-EVIVLRGIEGSSS 164 Query: 181 SKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAA 239 S E EGF A+A P VRIV D D + R+L+ ++L HP++ + A E A Sbjct: 165 SAERYEGFTQAMAEHPRVRIVAAEAADFDRDTARDLVTDLLADHPDVAGIF--AENDEMA 222 Query: 240 MGE----GRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQG 295 +G G + VV F + + R +K +++ + Q G A+EQA + L G Sbjct: 223 LGAVDALGERAGKDVKVVGFDGTEEGVRAVKNRKLVATIAQQSSELGATAIEQAGKLLDG 282 Query: 296 QSVSDNVSPPILVLTPKNADR 316 ++ +V P++V+T N ++ Sbjct: 283 EAAE-SVHTPVMVVTRDNIEK 302 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 63/303 (20%), Positives = 124/303 (40%), Gaps = 12/303 (3%) Query: 32 TVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 + + + P ++++ GM++AA G +L VL A G S + Q Sbjct: 15 SADNAANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNS--SQQ 72 Query: 92 QAQIDQCKQWGAEAILLGSSTTSFPDL---QKQVASLPVIELVNAIDAPQVKSRVGVPWF 148 Q+ A++ + + + A++PVI + V + +G Sbjct: 73 VNQVQNLVTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQRPQGD-VTTFIGSDSV 131 Query: 149 QMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDN 207 + + YL + GK N+ ++ G + E +G + + +P +++V D Sbjct: 132 KASTELCDYLAKQMGGKG-NLAIIKGVLGSSTEIERSKGCGSILEKNPDIKVVSTTNADW 190 Query: 208 DIEIQRNLLQEMLERHPEIDVVA--GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGL 265 D N+ Q++L +PE+ + +A AA + ++ L +VS QVY + Sbjct: 191 DENKAYNVAQDVLTANPELQAIFAQNDGMALGAAKAAAQAGRSNLKIVSVDGFPQVYDAI 250 Query: 266 KRGRVIMAASDQMVWQGELAVEQAIRQLQGQ--SVSDNVSPPILVLTPKNADREHIRRSL 323 + G+V+ S + GELAV AI+ + G+ S+ P +++T +N + Sbjct: 251 ESGQVLATMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQPTVLVTKENLEEARSAGYY 310 Query: 324 SPG 326 P Sbjct: 311 GPA 313 >UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD Length = 338 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 12/290 (4%) Query: 45 WKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAE 104 ++L + D ++ ++ G + AAR+ G L V +S A Q ++ Q + Sbjct: 47 YRLALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPEEFS-PAAQTPILNAVVQSNPD 105 Query: 105 AILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVK-SRVGVPWFQMGYQPGRYLVQ 160 AIL+ + + P +PV+ + I+ ++ +R+ + G G L + Sbjct: 106 AILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEEIALARISSDNVEGGRMAGEALAE 165 Query: 161 WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEM 219 GK VLL+ + + +GF AI P + + ++D ++ Sbjct: 166 QIGGKG-KVLLISVKPGISTTDQRKQGFEEAIKQYPDIEYLGTEYCNDDPTQAASITTST 224 Query: 220 LERHPEIDVVAGTAIAAEAAMGEG---RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASD 276 L+ HP++ + G + + G G + ++VV+F S L+RG + + + Sbjct: 225 LQAHPDLAGIFGANVFSGQGAGTGVRQAGKRDQVSVVAFDASPTQVEDLRRGNLDVLIAQ 284 Query: 277 QMVWQGELAVEQAIRQLQ-GQSVS-DNVSPPILVLTPKNADREHIRRSLS 324 G V+ A+R L+ G+ ++ +T N D + R L Sbjct: 285 HPNDIGRRGVQIAVRYLESGEEPENKQITTGFTTVTRDNLDAPEVERYLY 334 >UniRef50_B7DPH3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DPH3_9BACL Length = 329 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 11/281 (3%) Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 + + D +++S+ YG Q+ A++ GV L A YS A Q ++ A+ Sbjct: 44 IGFVPGETTDPFFISMAYGAQQEAKKLGVKLIYEGASTYSPSA-QTPYVNAMVSRHVNAL 102 Query: 107 LLGSST--TSFPDLQKQV-ASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 ++ + P +++ V A + V+ + I DA + SR+ Q G +L A Sbjct: 103 IVCPTDLTAMIPPIKQAVNAGIKVLTADSTISDASLLTSRITSDNEQGGAAAADFLGSMA 162 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLER 222 HG+ + +L P P K V+GF A + +I + DN+ Q L + L Sbjct: 163 HGQGVVGVLDPSP-GISTDKARVDGFIAEMKKKYPKIKVVIEYDNEQTTQAEQLAQDLML 221 Query: 223 HPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQ 277 H +V +A G + ++ T + +V + + LK G + + + Sbjct: 222 HYGKSLVGIFGTDDTSASGAAQGVRSSGSATHVNIVGYDAEPAEVQDLKEGMISALIAQK 281 Query: 278 MVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 + +GELAVE A+ L+ +SV V P +V+T N + Sbjct: 282 PMIEGELAVEYAVEALEHKSVPKFVQLPNVVITKANLAQNQ 322 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 56/336 (16%), Positives = 118/336 (35%), Gaps = 19/336 (5%) Query: 1 MRVLLFLLLSLFM-----LPAFSADNLLRWHDAQHFTVQASTPLKAK----RAWKLCALY 51 M+ LL + L A + N + ++ A + + L Sbjct: 1 MKKNKVLLWGIVFAIAVQLAACGSGNKDSASQEKTSKNASAEKSGASSGNYKGKSIAYLT 60 Query: 52 PSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS 111 PSL +W + +G+++ A+ +KV TQ A + + I++ + Sbjct: 61 PSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLANVQDAITNKVDGIVISPT 120 Query: 112 TTS---FPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLN 168 ++ + A +PV+ D+ + S + + G Y+ + K Sbjct: 121 DSASCIAVLSAAEEAGIPVVICDIGTDSGEYVSFISTDNSGGAKKLGEYVADKLN-KGDE 179 Query: 169 VLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDV 228 + + EGF I + + + + Q+++ +P + Sbjct: 180 IAQIALNQARKNGVLRKEGFEEGIKEKLKEVDFRQMEKVNRDEGVRYTQDLITSYPNLKC 239 Query: 229 VAG----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGEL 284 + ++ A A+ E N +V F S +V +K G ++ A+ Q V+ G Sbjct: 240 IFCHSEDPSMGAVTALKEINN--DKCKIVGFDCSPEVVEAIKSGDILATAAQQPVFMGRT 297 Query: 285 AVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 AV+ L G + +S L++T N + + + Sbjct: 298 AVDCLKTHLDGGTPEKEISVDTLLVTQDNINDVYDK 333 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 103/275 (37%), Gaps = 12/275 (4%) Query: 52 PSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS 111 P + +W S+ G +E A GV + VL S + +Q Q++ G AI + + Sbjct: 32 PGAGNPFWASVERGAREKAAELGVKIVVLSPPQESDVQSQINQVEDQITKGVTAIAIAVT 91 Query: 112 TTSFPD---LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLN 168 + + A +PV+ + V +G ++ + + Sbjct: 92 DPNALAKVIESARSAGIPVVFIDTKGINKGVT-FIGTDNKAGAKMAADFICDRV-SRGSD 149 Query: 169 VLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDV 228 V ++ G K +G A + G + IV + D R +++ +L R+ ++ Sbjct: 150 VAILQGIITQSTGKARADGAHAGLKGCGLNIVAEQPANWDRAQGRTVMENILTRNQKLKA 209 Query: 229 VAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGE 283 V + A+G LK + VV F + + + G + + G Sbjct: 210 VFAS--NDNMALGAVEALKDADMLNDVIVVGFDANPDAAKSILAGEMTATIAQFSYNMGA 267 Query: 284 LAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 VE+A+ +G+S+ V L++T KNA Sbjct: 268 YGVEKALELAKGRSLPPVVDTGTLLVTKKNAADFK 302 >UniRef50_A9KIC5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Clostridium phytofermentans ISDg RepID=A9KIC5_CLOPH Length = 325 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 118/297 (39%), Gaps = 13/297 (4%) Query: 39 LKAKRAWKLCALYPSLKD--SYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 L+ + + + + L D +W L G Q AA+ Y + L+ + Q I+ Sbjct: 28 LEKPKQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIE 87 Query: 97 QCKQWGAEAILLGSSTTS---FPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 + + + ILL ++ + + A + +I + + + V Q G + Sbjct: 88 EAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSGMKQDIADITVATDNIQAGIR 147 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQR 213 G + + K + ++ N+ + + EG + ++ +I I D++ + Sbjct: 148 IG-AVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAY 206 Query: 214 NLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRG 268 + E+L ++P+I V+ G + +A G R +K + +V S + + L+ G Sbjct: 207 DGTVELLTKYPDISVMVG--LNQYSATGAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEG 264 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 + G L VE+A++ L+ + V + ++T N ++ + P Sbjct: 265 IFEAMVVQKPFNIGYLGVEKALKLLKKEYVPKQLDSGCALITKDNMFIGMNQKLIFP 321 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 126/333 (37%), Gaps = 16/333 (4%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKR----AWKLCALYPSLKD 56 MR L ++ A VQ P KA + + + +L + Sbjct: 1 MRKTTRSLFAMTCAAVAIAAAGCGTTSENTGQVQQQDPTKACKGPDSKYTIGMSQANLAE 60 Query: 57 SYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT--- 113 Y + ++ +++AA + V A + Q + ++ + +++ + Sbjct: 61 PYRVRMDEDIRKAAEKV-PQFDVQFADAAKDNSKQVSDVENFMTKKVDLLMISPNEAAPL 119 Query: 114 SFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP 173 + + +PV+ L ++ + +G Q+G Q G Y + ++ + Sbjct: 120 TDVVKKAYNEGIPVVVLDRKVEGEAFTTYIGADNVQIGRQAGEYFKNTLLPQGGKIVQLK 179 Query: 174 GPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA--G 231 G + + E +GF IAGS + +VD A G+ + + + + +L+ HP+I V Sbjct: 180 GLSGSTPAAEREKGFMEGIAGSKIEVVDTADGEWERSVGQQKMDALLKAHPDIQAVYAQN 239 Query: 232 TAIAAEAAMGEGRNLKTPLTVVSFYLSH---QVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 +A A + + L V + +++GR+ GE AVE Sbjct: 240 DPMAEGAWLAAQAAGRKDLKFVGIDGLPIESGGIKAVEQGRLSATNLYPTG--GEEAVEA 297 Query: 289 AIRQL-QGQSVSDNVSPPILVLTPKNADREHIR 320 A + L Q V + P ++T +NA + + R Sbjct: 298 ARKLLIDCQPVPKEQTLPTELVTRENAAQVYTR 330 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 137/328 (41%), Gaps = 18/328 (5%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 + + S FM + S + A + P A A K+ + +L + +++ + Sbjct: 7 LCVLAWASAFMACSDSPRPTVPDVVASVSSRTQREPDAAPNARKIALVMKTLTNPFFIEM 66 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT--SFPDLQ- 119 G + A + G+DL V A + + Q I+ + +AI++ + P L+ Sbjct: 67 EKGARRAQKELGIDLLVKTAAQETSIEQQIQIIEDLIRMKFDAIVIAPGDSLRLVPVLKA 126 Query: 120 KQVASLPVIELVNAIDAPQVKS-------RVGVPWFQMGYQPGRYLVQWAHGKPLNVLLM 172 Q A + +I + N +DA +K + V + Y+ ++ + H KP ++ Sbjct: 127 AQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDNEKAAYESAGFIAREIH-KPAQAAIL 185 Query: 173 PGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG 231 G +A S++ G A +P +R+V + I+ R++ + + HP+I ++ Sbjct: 186 EGIRSADNSRQRRVGAERAFRENPLIRLVARESANWKIDEGRDVTRRLFSDHPDITLLFC 245 Query: 232 TAIAAEAAMGEGRNLKTP----LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVE 287 A+G + L+ + V ++ + R + GR+ + + Q QG + Sbjct: 246 A--NDMMALGAIQFLQESGRYGVKVAAYDALEEAKRAILSGRMEVTVNQQAAEQGYQGII 303 Query: 288 QAIRQLQGQSVSDNVSPPILVLTPKNAD 315 A R L G++V + V ++T ++ Sbjct: 304 LASRVLNGEAVPEVVLVETSLVTLESLK 331 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 63/317 (19%), Positives = 124/317 (39%), Gaps = 16/317 (5%) Query: 11 LFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAA 70 + + +A ++ A T + + +L+ ++ + + A Sbjct: 9 IVIATGVAATMVVGATACGRGGNGAKT--ADGKQITIGLAVANLQADFFNQIKQSVTAEA 66 Query: 71 RRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL---GSSTTSFPDLQKQVASLPV 127 ++ G+ + V +A G ATQ QI AI+ G++ P A +PV Sbjct: 67 KKKGIKVIVSDARG--DAATQVNQIQDFISRQVSAIIYIPAGATAAGVPVKAANRAKIPV 124 Query: 128 IELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEG 187 + + KS + G Y+V+ + GK + ++ G + +G Sbjct: 125 VTVDRNPPGEPGKSFIASDSVAAARTLGNYVVKESGGKG-QLAILQGQIGTTPQVDRQKG 183 Query: 188 FRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL 246 F A+ +P +++V D + ++ Q+ML+ HP ID++ G A A A+G + + Sbjct: 184 FGQALKNAPGIKVVSQQPADWAQDKAYSVSQDMLQAHPGIDILWGQADA--MALGAAQAV 241 Query: 247 K-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDN 301 K +V F + ++RG V Q G ++V A+ ++G+ V Sbjct: 242 KASGSKKKHLIVGFDGDIAGLKAVRRGTVDATMVQQTRKMGRMSVNTAVDIIKGKKVPAQ 301 Query: 302 VSPPILVLTPKNADREH 318 P +LT K+ + Sbjct: 302 QLQPAFLLTSKDKKKAT 318 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 57/306 (18%), Positives = 118/306 (38%), Gaps = 24/306 (7%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 + ++ + + + D ++++++ G +EAA+R GV+L + + G TQ ++ Sbjct: 26 AQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRLGVEL-IFQGGPEFSPTTQIPVLNAI 84 Query: 99 KQWGAEAILLGSST---TSFPDLQKQVASLPVIELVNAI-----------DAPQVKSRVG 144 +AIL+ + P + A + +I + I +A + V Sbjct: 85 IARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITVDTFIGENGQYQTGKGNADFPLAYVA 144 Query: 145 VPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIA 203 + G R L + K V + + + +GF+ + P + ++ Sbjct: 145 SDNVEGGRIAARALAKAIGEKG-KVYVSNVKPGISTTDQREQGFKEEMKKYPGITVLATQ 203 Query: 204 LGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLS 258 DND + L L R+P++ V G +A+G +K + V +F Sbjct: 204 YNDNDANKAASQLAAALARNPDLAGVFGA--NLFSAIGAANGVKNAGKRGAVKVAAFDCP 261 Query: 259 HQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 + +K G + MA G +AVE A++ L G+ + + V+ N D Sbjct: 262 ESIINDIKGGTIDMAVCQHPAEMGRIAVEWAVKALNGEKIPNRYGTGYTVIDRANVDSAE 321 Query: 319 IRRSLS 324 + ++ Sbjct: 322 AKAAIY 327 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 121/319 (37%), Gaps = 20/319 (6%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 ++LL L+ LF+ S D + + ++ + + + + ++LS Sbjct: 3 KILLVLVTMLFIFSCGSKDQAAGKTEDKPTET-------GEKTYTIGVSLLTQQHPFYLS 55 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS---FPDL 118 L +++ A V L V A L Q + I+ +AI++ + Sbjct: 56 LKDAIEKEAAAQNVKLNVSIA--NQDLNKQISDIEDFITKKVDAIIISPVDSKGVLAAVK 113 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 + + A++PVI + V + V + G G + + +GK V ++ P Sbjct: 114 KAEAANIPVITVDVPAIGVDVAAHVATDNYTGGKIAGEEMARLLNGKG-EVAVIEYP-TV 171 Query: 179 GGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA---I 234 + +EGF+ IA P ++IV I G E Q M++ + + + G Sbjct: 172 DSVVQRIEGFKEVIAKYPDIKIVAIQAGITRPE-ALTAAQNMIQANKNLGGIFGFGDDAA 230 Query: 235 AAEAAMGEGRNLKTPLTVVSFYLSHQVYRGL-KRGRVIMAASDQMVWQGELAVEQAIRQL 293 A A + + + V+ F + + K + G++AV+ ++ L Sbjct: 231 LAAVAAVKSAGKEDQIKVIGFDGMQEARDAVTKEKSFAAVITQYPEDMGKIAVDTTLKIL 290 Query: 294 QGQSVSDNVSPPILVLTPK 312 +G+ V N+ + T + Sbjct: 291 KGEQVEKNIPVTPGIFTKE 309 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 47/317 (14%), Positives = 114/317 (35%), Gaps = 20/317 (6%) Query: 16 AFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGV 75 A +AD + + +A++ + + + +L + Y ++L G + A GV Sbjct: 45 AQTADATGESGKDEESSAEAASGNYGDK--TIGFVGMTLNNEYHITLANGAKVEAEAKGV 102 Query: 76 DLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD---LQKQVASLPVIELVN 132 ++V ++ Q I+ + ILL S++ + + + A +P+I L Sbjct: 103 KIEVQAGDQHASADAQLGIIENMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDT 162 Query: 133 AIDAPQVKS------RVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVE 186 + + + G ++ G Y+ + K ++ G + + + Sbjct: 163 KLTDESLANVGLDIPFYGTNNYEGAKLAGEYVAKNFE-KGTKTAILKGIEGQTNAADRYN 221 Query: 187 GFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL 246 GF AG V +V + +++ Q ++ +P++++ +G R + Sbjct: 222 GFIEG-AGDTVTVVAEQTANWEVDQGYTAAQNIISANPDVELFFCC--NDNMGIGALRAI 278 Query: 247 KT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDN 301 K + ++ F + ++ G + + G+L V+ ++ G Sbjct: 279 KEANMQEQIQIIGFDAVSEALNLVENGEFLATVAQYPAEMGKLGVDNMLKIFDGGEAESY 338 Query: 302 VSPPILVLTPKNADREH 318 + V+T N Sbjct: 339 IDTGTEVITKDNVGEFK 355 >UniRef50_B0NFD0 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NFD0_EUBSP Length = 367 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 123/314 (39%), Gaps = 20/314 (6%) Query: 20 DNLLRWHDAQHFTVQASTPLKAKRA-WKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLK 78 + A + PL K KL A+ +L +S+W+++ G ++ A YGV + Sbjct: 52 STDTVFGKALAQVNEDLAPLPEKDTGKKLAAIESTLTNSFWVTMQEGYEDTAEEYGVSID 111 Query: 79 VLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD---LQKQVASLPVIELVNAID 135 V + Q ++ EAI + T + + +I N ++ Sbjct: 112 VQATDSDTDTTGQLDILNNMLVKDYEAIAVSPLTEDCLISGIVAANQNDVKIITTGNEVN 171 Query: 136 -------APQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGF 188 ++ +++ V ++ G +Y++ GK V ++ G + A S +G Sbjct: 172 EDSLKEAGGKIDAKITVDFYNQGVLGAQYIIDKTDGKG-KVAVIAGNEGATQSDARRDGA 230 Query: 189 RAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL-- 246 + + + +V + D D + + ++E +P+I +A + A+G R L Sbjct: 231 KETFEDAGMEVVAVEQCDFDAQKAYDAAAAIIESNPDIVGIAC--GNDDMALGVVRALEE 288 Query: 247 ---KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD-NV 302 K + VV + + ++ G + G+ AV ++ L+GQ VS Sbjct: 289 KDVKDQVAVVGVDFTEEAKAAIEEGTYDATVAMSPYLMGKEAVIIMLKALEGQDVSKVGD 348 Query: 303 SPPILVLTPKNADR 316 S P+ V+ N D+ Sbjct: 349 STPMAVVDSTNVDQ 362 >UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD Length = 343 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 46/300 (15%), Positives = 109/300 (36%), Gaps = 16/300 (5%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYG--VDLKVLEAGGYSQLATQQAQIDQCKQW 101 +L + ++ +W ++ G AA+R VD++ + + Q + Sbjct: 42 PIELAVVPKAVGFDFWETVRQGAVCAAKRAEGEVDVQWDGVAQETDVTGQVNLLQNFITQ 101 Query: 102 GAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRV-GVPWFQMGYQPGRY 157 G + ++ ++ Q + V+ + + D V + Y Sbjct: 102 GVDGLVYAATDAKVLHDVTQQALDQGITVVNIDSGTDPQPENVPVFATDNVAAAERATEY 161 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLL 216 LV+ V +P + EGF+ + +P V++V +++ + Sbjct: 162 LVEQLGEDGGKVAFIPFQPGTATNDTRTEGFKNVLKENPQVKLVAEQSSESNYNRALQVT 221 Query: 217 QEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVI 271 +++L HP++D + A +G ++ + +V + + + ++ G V Sbjct: 222 EDILTAHPDLDAIY--AANEPGVLGAAEAVRSAGKAGEIIIVGWDTAPDELKAVREGVVS 279 Query: 272 MAASDQMVWQGELAVEQAIRQLQ-GQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRP 330 + G V A++ ++ G+ V +++T +N D ++R L P P Sbjct: 280 ALIAQNPFRMGYDGVNAAVKMIRTGEQVEGG-DTGAILVTRENIDDPEVQRVLDPSCENP 338 >UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L479_THERP Length = 357 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 54/291 (18%), Positives = 115/291 (39%), Gaps = 14/291 (4%) Query: 37 TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 P A A+ P L ++ G ++ A+ GV + + + A Q I+ Sbjct: 67 VPTVAPGTKITIAMVPKLVHPFFEDCRKGGEQKAKELGVTFEYVAPQ-QADPALQVKIIE 125 Query: 97 QCKQWGAEAILLGSSTTSFPD---LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 + AI + + + + + ++ Q +G G Sbjct: 126 DLIRKKVHAISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQRVMYIGTDNKAAGKT 185 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQR 213 G + + +G+ V ++ G A + +EGF+ + G +++VD+ D+D++ Sbjct: 186 MGETMAKLLNGRG-KVGIITGGLGALNLNQRIEGFKEGV-GPNIQVVDVQATDDDLQKGL 243 Query: 214 NLLQEMLERHPEIDVVA------GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKR 267 ++ + ML HP+++ +A G +A E ++ L +V+F + R ++ Sbjct: 244 SVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIVAFDDLEETKRAIQE 303 Query: 268 GRVIMAASDQMVWQGELAVEQAIRQLQGQSVS--DNVSPPILVLTPKNADR 316 G + + V G L V+ A L G++ N+ + V+T +N + Sbjct: 304 GIIAATMVQRPVQMGVLTVQWAYDILTGKAKPPFKNIDTGVTVVTKENLNS 354 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 121/289 (41%), Gaps = 16/289 (5%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 K K+ + +L + +++ L ++ A + G + + ++ + A + A D Sbjct: 31 KPKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQ--NDTAKESAHFDAIIAA 88 Query: 102 GAEAILLGSSTTS---FPDLQKQVASLPVIELVNAIDAPQVK-SRVGVPWFQMGYQPGRY 157 G +AI+ + + + A +PV + I+A + +++ + G G Y Sbjct: 89 GYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARGLAVAQIYSDNYYGGVLMGEY 148 Query: 158 LVQWAHGKPLNVLLMP-----GPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEI 211 V++ K + +P G +A + + GF + + P ++V + D + Sbjct: 149 FVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVAQQSAEFDRDT 208 Query: 212 QRNLLQEMLERHPEIDVV--AGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGR 269 + +++L+ HPEI + A+A A +T + + F + V +K G+ Sbjct: 209 AYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDGAEDVINAIKEGK 268 Query: 270 -VIMAASDQMVWQGELAVEQAIRQLQGQ-SVSDNVSPPILVLTPKNADR 316 ++ LAVE A + L+G+ S + V + ++T +N D+ Sbjct: 269 QIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVTVELVTRENIDK 317 >UniRef50_D1PLY2 Putative periplasmic sugar-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLY2_9FIRM Length = 324 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 59/294 (20%), Positives = 118/294 (40%), Gaps = 12/294 (4%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + +K+ + S +W ++ G + AA Y +DL + TQ I + + Sbjct: 31 ENRYKVALVAKSTNTDFWKAVFVGAEAAATEYNMDLTIDGPETEEDYETQNRMIAEAVEN 90 Query: 102 GAEAILLGSS--TTSFPDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 GA+A++ + + P +++ + ++ + +A++ V + +G + G Sbjct: 91 GAQALVFSAIDFDANAPAIEEAADKGVKIVVIDSAVNTEDVATYIGTDNYSAGQMAAEAA 150 Query: 159 VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQ 217 +Q G L V ++ N+ ++ G A S IV + + + Sbjct: 151 LQGTEGT-LKVGIVNYDVNSANGQDRERGAVDTFAESGRAEIVATIHTLAEASSAQEDTR 209 Query: 218 EMLERHPEIDVVAG----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMA 273 +ML+ HPEI+ + T++ A A+ E +L+ L +V+F + L+ G V Sbjct: 210 KMLQDHPEINALLAFNEPTSVGAAQAVEEL-HLQNALWMVAFDSNLVTIDALQTGVVDAL 268 Query: 274 ASDQMVWQGELAVEQAIRQLQGQ--SVSDNVSPPILVLTPKNADREHIRRSLSP 325 G V+ A + L GQ V +V V+ +N ++ L P Sbjct: 269 VIQNTYEMGYFGVQSAYKLLSGQRSEVEKHVDTATRVINRENLFDLDSQKVLFP 322 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 120/284 (42%), Gaps = 14/284 (4%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYG--VDLKVLEAGGYSQLATQQAQIDQCKQ 100 + +K+ + SL+ ++++++ ++ + Y + ++++ + Q ++QC Sbjct: 52 QKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQIQLVEQCIT 111 Query: 101 WGAEAILL--GSSTTSFPDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRY 157 +AI++ S P ++K A + V+ + + S VG F +GY Sbjct: 112 NKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANTKANGGDIVSYVGAQNFDVGYSLATA 171 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLL 216 L + G+ V+L+ G S+E EGF+ A+ P + ++ D D ++ Sbjct: 172 LFEKLGGQG-KVILIEGKAGNSTSEERAEGFKEALKEYPGIELLASQPADWDRASAMTVM 230 Query: 217 QEMLERHPEIDVVAGTA-----IAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVI 271 + L+ + +ID V EA GR+ + ++F + V LK G + Sbjct: 231 ENCLQTYDQIDGVLTLTKDMGLGTIEAIKSAGRD--KEIVSMTFDVDDDVISALKAGDLY 288 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 + + Q +A+ A+ L G V + PI V+T ++ Sbjct: 289 ASGNQNEQSQAYIAIMTAVFALDGYKVDSSQIMPITVVTAEDFQ 332 >UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Gammaproteobacteria RepID=C6V848_ECOBD Length = 357 Score = 177 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 108/291 (37%), Gaps = 9/291 (3%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 + L + + +W ++ G + AA+ G + +Q+A Q ++ Sbjct: 64 KDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGDKTSYVGPADETQIAEQIQLVENAMAQK 123 Query: 103 AEAILLGSSTTSFPDLQKQVA---SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 +LL + + + A + V+ + I++ S V + G Q L Sbjct: 124 PNGLLLAALDANALAPLVETANSRGIKVVTFDSGINSDIPVSFVATNNRKAGAQAADALA 183 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQ 217 + K V ++ + E EGF + ++++ + D D + + Sbjct: 184 SQVNNKG-KVGIIAHVAGTSSAIERSEGFMERMKEKYPDIKVLPVQYSDGDPQKAMDKTI 242 Query: 218 EMLERHPEIDVVAGTAIAAEAAMGEG---RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAA 274 +M++ +P++ + GT + + +NLK + V+ F + + LK G + Sbjct: 243 DMIQANPDLAGIYGTNEGSTLGVANAIDSQNLKGKVKVIGFDSTEAIINFLKNGVIQGFV 302 Query: 275 SDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 G ++ L GQ+V + P+ + +N + I + L P Sbjct: 303 VQDAYQIGYQGIKTLNAALSGQAVEKEIDIPVKFVNAENINTPEIDKLLHP 353 >UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Bacteria RepID=C6D2L0_PAESJ Length = 333 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 125/332 (37%), Gaps = 16/332 (4%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAK-RAWKLCALYPSLKDSYWLS 61 +L+ L+++ ML A ++N D + + KA + + + +W + Sbjct: 7 LLVVALMTVVMLSACGSNN----SDGSSKSGTDNGGTKASGDKIYIPIISKGFQHQFWQA 62 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG--SSTTSFPDLQ 119 + G ++AA + V++ +Q+ Q + AI S S P LQ Sbjct: 63 VKAGAEKAATEFNVEITFEGPETEAQVDKQIEMLQAALDKKPSAIGFAALDSQASVPLLQ 122 Query: 120 KQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 K A +PVI + +D+ + + + G+ + ++ + Sbjct: 123 KAKAAGIPVIAFDSGVDSDIPITTASTNNVAAAALAADKMAELIGGEG-EIGVIVHDQTS 181 Query: 179 GGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA----GT 232 + +GF I ++IVDI G D +L + M++ HP I G+ Sbjct: 182 VTGVDRRDGFVNRIKEKYPNIKIVDIQYGGGDHLKSTDLAKAMIQAHPNIKGFFGSNEGS 241 Query: 233 AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 A+ A+ E + + +TV+ F +K G + A + V G V+ A+ Sbjct: 242 AVGVINAVTELKK-EGQITVIGFDSGKAQIDAIKSGVMAGAITQNPVGIGYETVKAAVEA 300 Query: 293 LQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 ++G+ V + N D + I+ L Sbjct: 301 IRGEKVESTIDTGFYYYDKSNIDSDEIKAVLY 332 >UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ Length = 339 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 108/304 (35%), Gaps = 12/304 (3%) Query: 37 TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 P K + + + S YWL++ G AA+++GV + + LA Q ++ Sbjct: 36 VPAKPAKHYHFTLITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAGQIGMVN 95 Query: 97 QCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 G + I+L + P +PV+ + + + + Sbjct: 96 NAVTGGTDGIILAAQNPQALLKPVKSALAHHIPVVTVDSGLSPNISDCFLATSNVGAAAA 155 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP--VRIVDIALGDNDIEI 211 +Y G ++ A +GF + P ++ I +ND+ Sbjct: 156 LAKYTADHLMGGKGQYAIVDFNHTASTGIARPKGFMLGMKSYPHIKKMGPIQYSNNDVSA 215 Query: 212 QRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK---TPLTVVSFYLSHQVYRGLKRG 268 + ML ++P + V+ G AA+G ++ + VV F +K G Sbjct: 216 GLRIATTMLTQYPHLKVIFGA--NDRAALGPAEAVQRAHAKVKVVGFDADLGEIALVKAG 273 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGF 328 + + G AV + +L G+++ ++ P +LTPKN ++ + Sbjct: 274 IIQASILQSPYDMGYYAVVALLDKLDGKTLPKRINTPYFLLTPKNLGSSQATAAIR--QY 331 Query: 329 RPVY 332 P Y Sbjct: 332 APKY 335 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 53/333 (15%), Positives = 120/333 (36%), Gaps = 27/333 (8%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 R+ + L L + + + P + + +L + ++ Sbjct: 4 RLFIALACLLTVFAGC------NKSENASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKV 57 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL--GSSTTSFPDLQ 119 + + ++ G D V+ G +A Q QI AI+L S + P +Q Sbjct: 58 IGDNIVSEGKKRGYDAVVV--SGDKDVAKQSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQ 115 Query: 120 -KQVASLPVIELVNAIDAP--QVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 A +PV + P ++ +++ + G + + +++ + ++ Sbjct: 116 EANAAGIPVFTVDIPCHEPGVKIATQIATDNYGGGKEAAKAMIEALGEAGGKIAIL-HFK 174 Query: 177 NAGGSKEMVEGFRAAI------AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA 230 A + V+GFR I S V IV + ++ L+ +P++ + Sbjct: 175 QAESCQLRVKGFREIIDAHNAEGKSKVDIVAELESGGAKDQGYKAAEDTLQANPDLHGIF 234 Query: 231 GTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELA 285 AI AA+G L+ + +V F + + +K G++ G Sbjct: 235 --AINDPAALGARAALEKAGKTDQVVIVGFDGQPEGKQAIKEGKIYADPIQFPDKMGAQI 292 Query: 286 VEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 V+ I+Q +G+++ + P + +A+++ Sbjct: 293 VDAIIQQSKGETLPPQMLIPTSLYKKADAEKDP 325 >UniRef50_C6CWF6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWF6_PAESJ Length = 327 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 56/316 (17%), Positives = 116/316 (36%), Gaps = 8/316 (2%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 R + +LL L + L + K ++ + L + +W S Sbjct: 6 RWNIGVLLLLIIFAYVLVQFYLSTERIRDLVTPLEASDKDHTRRQIALISQELDNPFWRS 65 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL---LGSSTTSFPDL 118 + G +AA +Y ++L+ + Q +++ + I+ +GS Sbjct: 66 VEEGAMKAAGQYRMELQYMGP-FRINAEEQMKLLEKAIASKMDGIIMQGIGSERDKALIE 124 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVL-LMPGPDN 177 + +PVI + + + VG G + G + + +P V+ ++ G Sbjct: 125 KANKLGIPVITVDTDEPGSKRLAYVGTNNSFAGQEMGHLIAEDGQKEPSGVIGVLVGSKE 184 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI-- 234 A + +EGF++ I + I ++ + ++ML+ HPEI + G + Sbjct: 185 AANQRLRLEGFQSVINTYKGLSIAEVRASNISRLQAAQQAEQMLKEHPEITYMVGFSSLD 244 Query: 235 AAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 A R +T+ +F +++ ++ + Q G A+ + Q Sbjct: 245 GIGMAEAVARVKPGGVTIFAFDDLEDTLAAIRKKQIEASIVQQPTQMGYEAISLLNQYSQ 304 Query: 295 GQSVSDNVSPPILVLT 310 GQ V+ PI V+T Sbjct: 305 GQDVTSKQYTPISVIT 320 >UniRef50_A4F0B1 Periplasmic sensory protein associated with the TorRS two-component regulatory system n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4F0B1_9RHOB Length = 272 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 121/252 (48%), Gaps = 7/252 (2%) Query: 68 EAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDL----QKQVA 123 E A+ ++ + +GGY Q + +C+ A AILLG+ + + P L Q Sbjct: 2 EQAKLSQAEVILFASGGYYGPEKQIELLMRCRARQATAILLGAVSANDPALLDAVQATAT 61 Query: 124 SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGS 181 +PV+ LVN +++P + VGV W QMG G +L Q A G P+ L+ GP +G S Sbjct: 62 QVPVVALVNELNSPFLSGAVGVDWRQMGNVIGHFLRQKFPAEGPPVKAALITGPAKSGWS 121 Query: 182 KEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG 241 + G + + S +I + D + Q ++ L+ I ++ G+A A E AMG Sbjct: 122 PLLEIGLQQGLDDSAAKITFVGRSDTGLRQQLAAVEAALKVDKGIQILIGSAPAIEGAMG 181 Query: 242 EGRNLKTPL-TVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD 300 N +VS Y+SH V RG++ G V A D V QG+L ++ A+ G+ Sbjct: 182 LAANSDGVFPELVSTYISHSVRRGVQSGTVTAVAFDDPVEQGKLGIKLALASRLGEFSPI 241 Query: 301 NVSPPILVLTPK 312 V P I ++ + Sbjct: 242 LVGPEIQLIERE 253 >UniRef50_Q7WIY8 Putative sugar ABC transport system, substrate-binding protein n=2 Tax=Bordetella RepID=Q7WIY8_BORBR Length = 361 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 127/306 (41%), Gaps = 18/306 (5%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDL-KVLEAGGYSQLATQQAQID 96 P+ A++ KL L D+++ + YG+ + ARR V++ +V AG Y + Q AQ+ Sbjct: 48 PIVARQPLKLGVTVVHLLDNFYKGIAYGIVDEARRSNVEVVQVAVAGAYGNVQQQFAQLQ 107 Query: 97 QCKQWGAE-AILLGSSTTSFPDLQKQVA--SLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 K G + A+L ++ + + + +A + I +++ ++ V +G Sbjct: 108 SFKTLGVDYAVLSPAAYSGYDPVVADLARSGIKTISAGIPVNSDKIAFGVLQDDTLIGKV 167 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIV-DIALGDNDIEIQ 212 G+ L + V+++PG S+ EGF+ + ++ G+ + Sbjct: 168 LGKALCDD-GAQGKQVIVVPGAAGLEWSRLRYEGFKEVASACGAKLTPAAFRGEMSLADG 226 Query: 213 RNLLQEMLERHPEIDVVA-GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVI 271 Q++L R P+ + V A+ R P+ V++ + + ++ GR++ Sbjct: 227 MAQTQDLLMRTPDAEYVFTPVTFLGMGAVRAARQANRPVKVLTSAMVKENEAMIREGRLL 286 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVS-----------DNVSPPILVLTPKNADREHIR 320 AS+ V G L V+ AIR+ +G + + + PI V+ N D Sbjct: 287 AVASEPGVIMGRLIVQYAIREHEGLPMPPLDKPTRSVPYPHFNVPITVVDKSNVDTHPYA 346 Query: 321 RSLSPG 326 P Sbjct: 347 FYDYPP 352 >UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces RepID=B4UZK6_9ACTO Length = 322 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 117/311 (37%), Gaps = 24/311 (7%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAE- 104 K+ + + + YW +L G ++ GV ++V + + A+I G Sbjct: 21 KIAIVTRNFTNPYWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGYNC 80 Query: 105 --AILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQ-------VKSRVGVPWFQMGYQPG 155 + + ++ P + +P++ L IDA S +G G Q G Sbjct: 81 FGVVPVNATNVITPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQAG 140 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNL 215 L++ GK V ++ G +GF +AG + IV D D + + Sbjct: 141 EGLLKLMGGKG-EVAILQGIAGEQNGINRQKGFTEKVAG-KLDIVATQPADYDQAKGQTV 198 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRV 270 + +L+ HP+I + A +G + ++ ++++S +K G + Sbjct: 199 TEAILKAHPKITGIF--AANDTMGLGAAQAVRNAGLTGKVSIISVDGISAALEAVKAGTL 256 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRP 330 S +G+LAV+ I + + V + PI ++ N D+ S P F P Sbjct: 257 SGTISQYPYAEGQLAVQACIDLVAKKKVPSRIVAPIALIDSTNVDKAI---SSVPQPFVP 313 Query: 331 VYFYQHTSAAK 341 F SA K Sbjct: 314 --FENPLSAGK 322 >UniRef50_C0Z4C9 Putative ABC transporter substrate binding protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z4C9_BREBN Length = 328 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 120/330 (36%), Gaps = 27/330 (8%) Query: 5 LFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNY 64 L L+++ + + SA T + + + + YW ++ Sbjct: 14 LVFLVAVTLFYSCSAS---------------LTDVVVDKKKTVALIVRMKHGDYWRTVKL 58 Query: 65 GMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQ 121 G + AA+ Y +L Q + Q G+E I++ S + Sbjct: 59 GAEMAAKEYERNLNFYAPDYEEDAQRQMELVQQAIADGSETIVVAPSDERVLREAIKLTR 118 Query: 122 VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGS 181 ++P++ L + VKS +G + MG + +V K VLL A + Sbjct: 119 ERAIPILVLDTVGNDSAVKSYIGTDNYDMGRKAFEKMVYLIEKKGQIVLLGTDRIKA-NA 177 Query: 182 KEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 K +G + V +V +D + +E++ +HP++ V A+ + A+ Sbjct: 178 KRREQGVLDLLPREMQVELVANENAPSDKKQIGEWTRELIRKHPQLKGVI--ALDSSTAI 235 Query: 241 GEGR-----NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQG 295 G L+ + +V+ +V L+ G + + + G L V+ A+ G Sbjct: 236 GVAEELESSGLRDKVKIVAIDSPPEVLEYLQEGIISATIIQKPLSMGYLGVKYAVEASNG 295 Query: 296 QSVSDNVSPPILVLTPKNADREHIRRSLSP 325 ++V V V+ +N ++ L P Sbjct: 296 EAVPSLVDTGTKVIDRENMFWSENQKLLFP 325 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 54/290 (18%), Positives = 109/290 (37%), Gaps = 18/290 (6%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYG-VDLKVLEAGGYSQLATQQAQID 96 A+ + + SL + ++ ++ G + A G +L + + +Q ++ Sbjct: 57 MAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYELLAVGMQNETDFESQINAVE 116 Query: 97 QCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVK------SRVGVPW 147 G +AI++ + + P + A + VI A+D ++ + VG Sbjct: 117 NFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELAFVGPDN 176 Query: 148 FQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDN 207 G L + G+ V+++ G A + + GF AIA + +++ Sbjct: 177 RMGAEMAGNALGEAL-GEGGRVVIIEGNPGADNATQRRLGFEDAIATHGLELLESRTAHW 235 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL----KTPLTVVSFYLSHQVYR 263 + E + ML HP++ V A A+G L + + VV F V Sbjct: 236 ETEEANQVFAAMLTAHPDLQGVM--AANDSMAIGVIEALDAAGRDDILVVGFDAVPAVLP 293 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQ-GQSVSDNVSPPILVLTPK 312 ++ GR++ A++ A+ L+ G + V PI ++T Sbjct: 294 MIEDGRMLATVDQFGQAMAANAIDLALEVLETGVDLEGWVRTPIELVTAN 343 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 114/281 (40%), Gaps = 6/281 (2%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGA 103 + + + Y+ ++ G + AA+ G + + Q +QI+ Sbjct: 24 DETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVHYIPTKPDSIPEQLSQIEDVIVKKP 83 Query: 104 EAILLGSST--TSFPDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQ 160 AI+ P +++ A +PV+ + + + + VG + +G + GRYL++ Sbjct: 84 SAIVFVPVDYKAMVPGVEQINDAKIPVVNVTDRSAGGKFLAFVGADDYSLGLETGRYLLK 143 Query: 161 WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG-SPVRIVDIALGDNDIEIQRNLLQEM 219 GK NV+++ G + + + V GF A+ V+++ + +++ + Sbjct: 144 EMGGKG-NVVILEGVKGSLTNVDRVRGFNDALKEFKDVKLLASQPANYQRLQGLQVMENL 202 Query: 220 LERHPEID-VVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQM 278 ++ HP+ID V+A A A+ VV + + +K G+++ + Sbjct: 203 MQSHPQIDGVLAANDAMAIGAIEALDGANRKAKVVGINGTKEAVDAIKSGKLLASGDYNG 262 Query: 279 VWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHI 319 QG + AIR L+ +++ + V V+ N + Sbjct: 263 FLQGCIGTMVAIRALRKETIVNEVVLKPTVVNASNYKPYDV 303 >UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGQ4_PETMO Length = 342 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 58/322 (18%), Positives = 125/322 (38%), Gaps = 13/322 (4%) Query: 21 NLLRWHDAQHFTVQASTPLKA--KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLK 78 +L+ + F + + P KA + + + ++ +W + G Q+AA +GV+ Sbjct: 18 SLIGFGQTSFFDISKANPPKAIQSSDMTIFFIVKASENEFWQIVLDGAQKAANHFGVEFI 77 Query: 79 VLEAGGYSQLATQQAQIDQCKQWGAEAILLGS--STTSFPDLQKQ-VASLPVIELVNAID 135 EA S+++ Q + ++ +AI+L + P +++ + +PVI + + + Sbjct: 78 HQEATSESEVSRQVSILETAISTNPDAIVLAPTVADALVPGIERAMDSGIPVIIIDSMAN 137 Query: 136 APQVKSRVGVPWFQMGYQPGRYLVQWAHGK----PLNVLLMPGPDNAGGSKEMVEGFRAA 191 S +G + +G + L + K V + G + + GF Sbjct: 138 TDNYVSFLGSDNYTIGQRSADELAKALEEKNGSPSGKVAAITYMSGVGSLEARISGFLDR 197 Query: 192 IAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT--AIAAEAAMGEGRNLK 247 I + + +V + + N+ ++L +P++D + + + Sbjct: 198 IEEAYPDIEVVSVRDAMGQVGNTINITLDLLTAYPDLDGLYANNQMTGDDMVRALDMQGR 257 Query: 248 TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPIL 307 L V+ S Q GL+ G + Q G V A+ G ++ NV IL Sbjct: 258 NDLAAVAVDASAQEIWGLENGYLDSVLVQQPWVMGYAGVAYAVMARNGVPLAKNVDTGIL 317 Query: 308 VLTPKNADREHIRRSLSPGGFR 329 V+TP++ +++P + Sbjct: 318 VITPESLASGEADAAINPFEYY 339 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 57/293 (19%), Positives = 111/293 (37%), Gaps = 14/293 (4%) Query: 34 QASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQA 93 A T + A P D + L GM+E + D++V+ + + Q + Sbjct: 46 TAQTSGDKSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQK-DVEVIYVDAMNDASKQLS 104 Query: 94 QIDQCKQWGAEAILLGSSTTSFPDL---QKQVASLPVIELVNAIDA-PQVKSRVGVPWFQ 149 Q++ Q +AI+L T + A++P++ + D + + VG + Sbjct: 105 QVENFIQQKVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVDKATAYVGSESIK 164 Query: 150 MGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDND 208 G + + +GK + +M G + EG + I P +++V + D Sbjct: 165 AGIMQMEEVAKLLNGKG-KIAIMNGQMGHEAQIKRTEGNKQVIKKYPDMKVVLEGTAEWD 223 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG-----EGRNLKTPLTVVSFYLSHQVYR 263 +L++ L+ +ID V E A+G E + V + Sbjct: 224 RAKGMSLMENWLQSGKKIDAVVCN--NDEMAIGAIMALEDEGKLDDVIVAGVDATPDALE 281 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 +K G++ + QG+L +E AI+ +G+ V P ++T N + Sbjct: 282 YVKEGKLKVTVFQNAKGQGQLGLEVAIKAAKGEKVEKFNWIPYELVTKDNVEE 334 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 98/280 (35%), Gaps = 19/280 (6%) Query: 48 CALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL 107 + +L + +W+++ G++ A+ GVD+ + + +Q + + I Sbjct: 28 AVILKTLSNPFWVAMKEGIENEAKALGVDVDIFASPSEGDYQSQLQLFEDLINKNYKGIA 87 Query: 108 ---LGSSTTSFPDLQKQVASLPVIELVNAID-------APQVKSRVGVPWFQMGYQPGRY 157 L + P + + ++ L ID V++ + +G + ++ Sbjct: 88 FAPLSPANLVMPAAKAYRKGIYLVNLDEKIDIKNLQKAKGNVEAFITTDNVAVGGKAAQF 147 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAA-IAGSPVRIVDIALGDNDIEIQRNLL 216 +V + V ++ G + G R + S +++V D D ++ Sbjct: 148 IVDKLGSEGGEVAIIEGKAGNASGEARRRGAREVFVKSSSIKLVASQPADWDRIKALDVA 207 Query: 217 QEMLERHPEIDVVAGTAIAAEAAMGEGRNL-----KTPLTVVSFYLSHQVYRGLKRGRVI 271 +L R+P + AMG + + + + VV + + + ++ Sbjct: 208 TNVLSRNPNLKAFY--VANDTMAMGVAQAVINAGKQGKILVVGTDGVPEARKMVSERKLT 265 Query: 272 MAASDQMVWQGELAVEQAIRQLQ-GQSVSDNVSPPILVLT 310 + G ++ + + G+ + +V P I + Sbjct: 266 ATIAQDPAMIGAKGLKLLVDAARAGKQIPVDVEPKIETVD 305 >UniRef50_C3JFS7 ABC transporter, nucleotide binding/ATPase protein n=2 Tax=Rhodococcus erythropolis RepID=C3JFS7_RHOER Length = 334 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 112/282 (39%), Gaps = 10/282 (3%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 K+ + +L+ Y+ +N + A + GVDL+++ G Q D Sbjct: 50 TNGKLKVGLVTINLQALYFNQINNAAKNVADKAGVDLQII--SGNDDSVAQANAFDNLIA 107 Query: 101 WGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRY 157 G +AI++ + T ++ + A +PV+ + ID P + ++VG + G + G Sbjct: 108 AGVDAIIVDAIDTDGIKPSVVKAKNAGIPVVAVDATIDDPALSTQVGTANAEGGAKIGNT 167 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQ 217 L A+ + + G N+ E +GF + G + + + G N E + + Sbjct: 168 LADVANNTGT--VGIVGALNSTVQLERQKGFTETVTGRGMTVGTVVDGRNIQENAQTAAE 225 Query: 218 EMLERHPEIDVVAGT---AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAA 274 +L ++ V T A+ A + + + V + LS Q GLK G + Sbjct: 226 NLLTGGGDMKYVYATGEPALIGLVAAVNSQKAQDRIEAVGWDLSDQAVGGLKAGWLKGVV 285 Query: 275 SDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 G A+ AI G+ N+ P ++TP+N Sbjct: 286 QQNTFEFGHEAMNSAIDLACGRGAPANIPVPTQIVTPENVAD 327 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 46/323 (14%), Positives = 116/323 (35%), Gaps = 22/323 (6%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ ++ + L L M S + A T KA+ ++ + +L + +W+ Sbjct: 1 MKNIMKIFLLLTMFLLVSCGGAKEEAKTEDGNEPAKTEQKAEGQAEIAIVLKTLSNPFWV 60 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL---GSSTTSFPD 117 + G+++ A G+ + ++ A + Q I+ G +AI + T Sbjct: 61 EMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAIGIAPLSPVNTIPAI 120 Query: 118 LQKQVASLPVIELVNAID-------APQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVL 170 ++ + V+ + +D V + V ++G + Y++ + V Sbjct: 121 VEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAEYIIGKL-PEGGEVA 179 Query: 171 LMPGPDNAGGSKEMVEGFRAAIA-GSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVV 229 ++ G + +G A S ++V D D ++ +++++P + + Sbjct: 180 IIEGKSGNASGEFRRQGATEAFKADSKFKLVASQPADWDRSKALDVAANLIQKYPNLKAI 239 Query: 230 AGTAIAAEAAMGEGRNL-----KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGEL 284 A+G + + + VV + + + G++ + G Sbjct: 240 YAC--NDTMALGAVQAVANAGKTGQILVVGTDGAPEARTSIDEGKLNATVAQDPAMIGAT 297 Query: 285 AVEQAIRQLQGQSVSDNVSPPIL 307 +++ I ++ + +SP I Sbjct: 298 SLKILIEAIKDKP---QISPDIE 317 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 58/313 (18%), Positives = 110/313 (35%), Gaps = 17/313 (5%) Query: 17 FSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVD 76 F A + T K+ + SL + ++ + G +E AR+ Sbjct: 25 FGAFTTVGLLAGCGTTSATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATR 84 Query: 77 LKVLEAGGYS--QLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELV 131 G ATQ A ++ + I+L + + P + A + VI + Sbjct: 85 FDFTATGINDERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINID 144 Query: 132 NAIDAPQVKS------RVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMV 185 A+D K+ G G L + G V ++ G A + + Sbjct: 145 VALDEATKKAAGIDLAFFGPDNRAGAKMSGEVLAKAL-GAGGKVAVLEGNPEADNAVQRR 203 Query: 186 EGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT----AIAAEAAMG 241 GF AIA + +V G + +++ L+++P++ + A A A+ Sbjct: 204 LGFDDAIADGSLNLVVAESGHWETSEGQSITAAWLKKYPDLQGIMCANDSMAFGAVQAL- 262 Query: 242 EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDN 301 E NL + VV F V +K G+++ + ++ R L+G+ S Sbjct: 263 EAANLLDKIKVVGFDNIPAVQPLIKDGKMLATVEQYGAQMAAIGMDYGYRTLKGEKFSGW 322 Query: 302 VSPPILVLTPKNA 314 + + ++T N Sbjct: 323 IRTELKLITKDNL 335 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats. Identities = 61/335 (18%), Positives = 130/335 (38%), Gaps = 23/335 (6%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ ++FL L ++ + + A T + +AK+ K+ L P Y++ Sbjct: 1 MKKIIFLFTILLLIMSCGNKQETKAEGAAGNTAETK---EAKK--KIGVLIPGPV-GYFV 54 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQ- 119 ++ G+ +AA V++ +AG + Q +Q++ + I + + ++ Sbjct: 55 AVREGIDKAAAENNVEITYSDAG--WDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAV 112 Query: 120 --KQVASLPVIELVNAI------DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLL 171 A++P++ NAI + + + VG + G G K V+L Sbjct: 113 RMANEANIPILAFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEKGGKVVL 172 Query: 172 MPGPDNAGGSKEMVEGFRAAIA-GSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA 230 + G +G A+ +V + + E +++++++++ IDV+ Sbjct: 173 IEGRPGTSPQINRRKGVMEALDTNKNFEVVYTQTSNWEKEQALKIVEDLIQKNQTIDVII 232 Query: 231 ----GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 +AI A A+ E NLK + V+ S + +K G + V +G A+ Sbjct: 233 AQDDNSAIGAGMALKEA-NLKDKILVIGLGGSTEGLNAVKSGLIDGTTYMSAVEEGYTAI 291 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 A++ L G+ V + + N + Sbjct: 292 TAAVKYLNGEKVEPVTQMKQVEVNKSNVESFKGEW 326 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats. Identities = 57/293 (19%), Positives = 111/293 (37%), Gaps = 12/293 (4%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 A + +L + + L M+ + Y ++K++ SQ Q +Q+D Sbjct: 41 AAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYD-NVKLIINDAESQSDKQASQLDSFV 99 Query: 100 QWGAEAILLGSSTTSFPDLQKQV---ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 G +A+++ + A +PVI + Q + VG G + Sbjct: 100 AQGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQVWVGSSNENGGEIEMK 159 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 Y+ + GK + ++ GP A + G+ + P + IV G+ E L Sbjct: 160 YVAEKLGGKG-KIAVLRGPLGAFAEQGRFAGYETVLKDYPDIEIVFDQTGNWQREEAMAL 218 Query: 216 LQEMLERHPEIDVVA----GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVI 271 ++ +L E+D + G A+ A A+ K +T+ +K G + Sbjct: 219 IENLLTAGTELDAIVCQNDGMALGALEAVKAA-GKKDQITITGIDAIVDALDSIKAGELD 277 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 + QG A++ A++ +G++V + P ++T N D + R L Sbjct: 278 ATCFQDAIGQGTNALDMAVKAARGETVER-MDIPFELVTKDNVDGYYDRIKLP 329 >UniRef50_Q9K692 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K692_BACHD Length = 332 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 123/331 (37%), Gaps = 9/331 (2%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQ-ASTPLKAKRAWKLCALYPSLKDSYW 59 M+ LF ++ + + A ++ + S+ + + + +SYW Sbjct: 1 MKRHLFFVVGFMICISALATSIYSFVQVTRVETNVPSSTSISLPSSHFVLIAEEENNSYW 60 Query: 60 LSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPD 117 + G +EA ++ V ++ +A S Q ID + I++ + P Sbjct: 61 RLVEKGAREAENQFDVLVEY-KAPKRSNPEEQLKLIDMAISAKVDGIIVQAVNEEMFTPL 119 Query: 118 LQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 + K V A +PVI + + +G + G G+ ++ G ++V ++ G Sbjct: 120 INKAVDAGIPVITIDTDAPRSNRVAYIGTDNYYSGTIAGKAMLDDMEG-DIHVAVITGSL 178 Query: 177 NAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT-AI 234 + K V+GF I+ P V +V++ + +++E HP I+ GT A+ Sbjct: 179 ESSHQKLRVQGFIDMISNEPRVTLVEVEASNISRLEAELKAHQLMEEHPHINAFYGTSAL 238 Query: 235 AAEAAMGEGRNLK-TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL 293 + L L V++F + L++ ++ + G +VE + Sbjct: 239 DGIGIVAAAEKLGLDDLYVIAFDTLPENLSLLEQEKIDAIVVQEPFEMGLKSVELLLDIR 298 Query: 294 QGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 +GQ S ++ + + L Sbjct: 299 EGQPYSMTNHTHTSIIRKPDLSLLQEHQRLG 329 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 113/285 (39%), Gaps = 18/285 (6%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 + + AL + + +W ++ G+++AA++ V+L + + + Q Q Sbjct: 23 QQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQAVASETDVEPQLNACLNLLQRK 82 Query: 103 AEAILLGSSTTS--FPDLQKQVA-SLPVIELVNAID-------APQVKSRVGVPWFQMGY 152 +A+++ + + P L++ ++P+++L +D ++ + + G Sbjct: 83 PQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPAVLQREGVKIAFSISSDNRRAGA 142 Query: 153 QPGRYLVQWAH-GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP--VRIVDIALGDNDI 209 Y+V G VL++ G +GF + +IV GD D Sbjct: 143 SAAEYVVSKLGQGFSGKVLVIEGLAGNVTGAARRDGFTERLKQIAPNAQIVATLPGDWDR 202 Query: 210 EIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL---KTPLTVVSFYLSHQVYRGLK 266 N+ + L+RHP++ + A+G + + VV + + ++ Sbjct: 203 LKAANITNDTLQRHPDLAAIYCA--NDTMALGAVEAVFAAGKKVLVVGTDGNSDAVKSIR 260 Query: 267 RGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTP 311 GR+ + + G A+E ++ ++G+ V + P LV+ Sbjct: 261 AGRLNASVAQLPFLVGSRAIENVLKVIKGEQVDPKIIVPTLVIDK 305 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 110/285 (38%), Gaps = 14/285 (4%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 A ++++ + D++ + G++EAAR+ V L+ +A G + Q Q+ Sbjct: 19 AAASYRIGVTIARVDDNFMTYVRSGLEEAARKENVQLQFEDAQG--DVVRQINQVQGFLS 76 Query: 101 WGAEAILLGSSTTSFPDL---QKQVASLPVIELVNAIDA---PQVKSRVGVPWFQMGYQP 154 +A+++ TS A +P++ + D P+ + V + G Sbjct: 77 QKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVLPKGVTTVASNDIEAGQLQ 136 Query: 155 GRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQR 213 RYL + GK + L+ G + + EG + + P + IV+ + Sbjct: 137 MRYLAEKMGGKG-TIALIMGDLAQNSTHDRSEGVKQVLKDYPGITIVEQQTAEWQRNKGM 195 Query: 214 NLLQEMLERHPEIDVVAGT----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGR 269 +L L D + AI A A+ + K + +V +KRG Sbjct: 196 DLTSNWLLAGRTFDAIVANNDEMAIGAAMALQQAGKAKGEVAIVGIDGLPDGLAAIKRGM 255 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 + + Q A++ AI+ ++G+ V V P ++TP+ Sbjct: 256 LAASVFQDPKAQATTALQSAIKMIKGEPVDAEVWVPFQLITPEQV 300 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 98/280 (35%), Gaps = 19/280 (6%) Query: 48 CALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL 107 + +L + +W+ + G+++ A+ GV + + + +Q + + I Sbjct: 28 AVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIA 87 Query: 108 ---LGSSTTSFPDLQKQVASLPVIELVNAID-------APQVKSRVGVPWFQMGYQPGRY 157 L S P + + ++ L ID V++ V +G + + Sbjct: 88 FAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASF 147 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG-SPVRIVDIALGDNDIEIQRNLL 216 ++ + V ++ G + G A S +++V D D ++ Sbjct: 148 IIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVA 207 Query: 217 QEMLERHPEIDVVAGTAIAAEAAMGEGRNL-----KTPLTVVSFYLSHQVYRGLKRGRVI 271 +L+R+P I + AMG + + + VV + + ++ G++ Sbjct: 208 TNVLQRNPNIKAIYCA--NDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMT 265 Query: 272 MAASDQMVWQGELAVEQAIRQLQ-GQSVSDNVSPPILVLT 310 + G ++ + + G+ + + +P ++ Sbjct: 266 ATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPEFKLVD 305 >UniRef50_Q89SY1 ABC transporter sugar-binding protein n=4 Tax=Rhizobiales RepID=Q89SY1_BRAJA Length = 329 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 60/290 (20%), Positives = 113/290 (38%), Gaps = 20/290 (6%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARR---YGVDLKVLEAGGYSQLATQQAQIDQCK 99 + K AL ++ +W G+++A + Y ++L V G A Q+ ++D Sbjct: 37 QQKKTIALVTNVAADFWTIAGRGLEKAQKEHPDYNIELIVTNEGT---AAGQRRELDDLL 93 Query: 100 QWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVK--SRVGVPWFQMGYQPGRY 157 G I + Q + + + DAPQ + +G G Q G Sbjct: 94 VRGVAGISISVDDAPHATEQLNKVAAKTVLITTDSDAPQSNRLAYIGTDNVAAGRQAGEE 153 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQ 217 + + + L G +A ++E V+G + AIAG+ V +VD+ D + ++ Sbjct: 154 IKKAL-PNGGKIALFVGTMDADNARERVQGIKEAIAGTKVELVDVFTDQVDFAKAKANME 212 Query: 218 EMLERHPEIDVVAG-----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIM 272 +L ++P+I +++G T + +A G+ K + +V F + RG+ G + Sbjct: 213 NVLVKYPDIALLSGLWSYETPLIYDAVKAAGKAGK--VKIVGFDEDQRTLRGVSDGTIES 270 Query: 273 AASDQMVWQGELAVEQAIRQLQGQ----SVSDNVSPPILVLTPKNADREH 318 Q G L+ I+ L G + P V++ N Sbjct: 271 TVVQQPYEFGYLSATNIIKTLNGDKSWIPAGGKLIVPTKVISKSNVAEFT 320 >UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Tax=Bacteria RepID=A9GMT2_SORC5 Length = 340 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 54/331 (16%), Positives = 116/331 (35%), Gaps = 15/331 (4%) Query: 7 LLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGM 66 +++ F++ +A + A A+ ++ + +W S++ G Sbjct: 5 VVVCAFVIALLAACSKTSSSATTSTDAGAGATGGAR--LRIAVVPKGTTHEFWKSVHAGA 62 Query: 67 QEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVA 123 +A+R VD+ L Q + G I+L + P + A Sbjct: 63 VKASRELDVDVVWKGPLREDDLKAQVDVVSSFVAQGVSGIVLAPLDATALRAPVRAARQA 122 Query: 124 SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKE 183 +PV+ + + + S V G G +L + G+ V+++ + + ++ Sbjct: 123 KIPVVVFDSDLASDDHVSFVATDNEAAGRLAGEHLGKAI-GEDGKVVVLRYQEGSASTQH 181 Query: 184 MVEGFRAAIAGSPVRIVDI--ALGDNDIEIQRNLLQEML--ERHPEIDVVAGTAIAAEAA 239 +GF A+ P V G E + + +L +R E + Sbjct: 182 REKGFLDAVRAMPGVTVASENQYGGATTESAFHKSESLLLAQRAAEGAIAGVFTPNESTT 241 Query: 240 MGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 G + L+ + V F S ++ L+ G + G +AV+ + L Sbjct: 242 FGMLQALRKTNVARKVKFVGFDASEKLLGALREGDIEALVVQNPFNMGYVAVKTMVAHLH 301 Query: 295 GQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 G+ V+ + V+T ++ D ++ + P Sbjct: 302 GEKVAARIDTGSRVVTRQDLDDPAVQEIVRP 332 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 126/314 (40%), Gaps = 17/314 (5%) Query: 16 AFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARR--- 72 AF+ D+ + + K + KL ++ + ++ YW +L G + ++ Sbjct: 42 AFNPDSDPNGVEFSEIREKLGAMPKVEGEIKLGSVAKAFENEYWRTLKEGEELGTQKFKE 101 Query: 73 --YGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDLQKQVAS-LPV 127 Y + L + A G Q + ++ A+LL + P ++K + +PV Sbjct: 102 NGYNITLDMKSAQGEGDEQGQLSIVEDMINKKYTALLLSPISDGNLVPGVEKAKKNNIPV 161 Query: 128 IELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEG 187 I + + I VG G ++ + G+ V ++ G A +++ G Sbjct: 162 INVNDGI-IKNADIFVGPKAIMNGELAAEWISKKIGGEG-EVAIVIGMPKAFAARQRTLG 219 Query: 188 FRAAIAGSP--VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRN 245 F + + V+IV+ D D ++L + ++++P + + A+G Sbjct: 220 FENWMKSNAAGVKIVEKQNADWDRAKAKDLAEIWIKKYPNLKAIFCN--NDVMALGVQEA 277 Query: 246 L---KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNV 302 + K + VV + Y +++G + +++G++AVE A+R L GQ + + Sbjct: 278 VNASKRDILVVGVDGIKEAYESIRKGEMDATVDSFPLYKGQIAVEMALRSLGGQQLPRVI 337 Query: 303 SPPILVLTPKNADR 316 P ++ N + Sbjct: 338 WTPQALIDSTNVNE 351 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 54/292 (18%), Positives = 121/292 (41%), Gaps = 14/292 (4%) Query: 33 VQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQ 92 Q+S + A S+++ + ++++ M+ A+ GV+L ++A Q Sbjct: 20 NQSSDNESGGDNLVIGATMLSMQNEFIVNVSDAMEAKAKEMGVELITVDA--ERSALKQV 77 Query: 93 AQIDQCKQWGAEAILLGSST--TSFPDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQ 149 Q++ G +AI++ + S P ++ A +P+I + + + + + VG + Sbjct: 78 EQVESFIGQGVDAIIMNPAEVEASSPAIKLAMDAKIPIINVNSET-SAKPTAFVGSDDTE 136 Query: 150 MGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDND 208 +Y+ + GK N+L+M G + G + + +P ++++ G+ D Sbjct: 137 SARIAMKYIAEKLGGKG-NILMMHGFMGQAAQIKRDNGAKDILKANPGLKLLAEQSGEWD 195 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR-----NLKTPLTVVSFYLSHQVYR 263 +L + ++ + + + A A E MG + LK + VVS + Sbjct: 196 RAKGMSLTENWIQSYGD-KINAIFAQNDEMGMGAVKALEAAGLKGKVLVVSVDAIPDALQ 254 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 +K+G + QG A+E A++ + ++ V P ++ N + Sbjct: 255 AVKKGTLDATVFQNAKEQGGKAIETAVKAAKKEAFEKEVLIPFQLVDKGNVE 306 >UniRef50_B5WB27 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Burkholderia sp. H160 RepID=B5WB27_9BURK Length = 301 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 101/281 (35%), Gaps = 10/281 (3%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 ++ +L + + + + G + AA G + Q ID Sbjct: 4 RSSPDMRLAVFTKNSTNPAYDAARIGAERAATGTGAVVTHYVPQTPDDPQEQSDLIDSAL 63 Query: 100 QWGAEAILLGSST---TSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 +A +L + A +P++ V+ + V S VG + + Sbjct: 64 AARPDAFVLSPVHPVRVDAAIQRIAAAGIPIVSFVSPVATAPVVSHVGADDAALAKAVAQ 123 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 YL Q G VL++ GP ++ S E + GF AA A P + +V G+ Sbjct: 124 YLFQHLDGH-ARVLVVTGPVDSSTSIERLAGFHAAAADFPGIELVGTIAGNYARTTAHTR 182 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPL---TVVSFYLSHQVYRGLKRGRVIM 272 E L HP D A A+G L VV + + +GR++ Sbjct: 183 TAEWLAGHPCPD--ACLVANDFMAIGVLEALAEKQCTSNVVGVNAIPEAITAISQGRMLA 240 Query: 273 AASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 +A + LA + AIR LQG SV V P+ ++ N Sbjct: 241 SADFSAMQMAFLATQCAIRYLQGLSVPAEVQLPVRIVDHSN 281 >UniRef50_C2KRR4 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Actinomycetaceae RepID=C2KRR4_9ACTO Length = 326 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 116/333 (34%), Gaps = 23/333 (6%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 +VL ++ L A + + + K+ + + ++W S Sbjct: 6 KVLALGAIACLSLTACGSSPASSDGKSADAKSNSK---------KIILVSKGFQHTFWQS 56 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--PDLQ 119 + G E + G +++ + + + Q Q+ AI L + + P LQ Sbjct: 57 VKKGALEKGKELGYEVEFIGPKNETAVTEQLDQLKNALNAKPAAIGLAALDSKAAEPILQ 116 Query: 120 K-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 + + A +PVI + +D+ + V G + L Q K V ++ Sbjct: 117 QIKNAGIPVIAFDSGVDSDIPLTTVQTDNRTAGAKAAEKLAQLMGNKG-TVGIVCHGQAT 175 Query: 179 GGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 K GF+ + ++++ D + + + +++ + ++ + G+ Sbjct: 176 TTGKGRCFGFQDWMKEHAPDIKLLQEQWAD-ERGKAADAAKAIVKSNTDVTAMYGS--NE 232 Query: 237 EAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 A G + +K +T+V F +K G A + V G V A + Sbjct: 233 VTAAGVLQGVKEAGKMGQITIVGFDSGKAQIDAIKSGDEAGAITQAPVKMGAETVAAADK 292 Query: 292 QLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 ++G+S+ + N D I+ ++ Sbjct: 293 AIKGESLEKIIDSGFAWYDKSNIDTPEIQSNIY 325 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 119/323 (36%), Gaps = 14/323 (4%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M + + L + + + + + + + + ++ Sbjct: 10 MLIFTAITLIGVSVLLGGCGSKQGNTQTGTSSGTTTQNTEKSGEKVIGVSLLTREHVFYN 69 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDL 118 + +QE A+ Y +++A Q AQ+ +AI+L + ++ P + Sbjct: 70 LIEKAIQEKAQGYKFKPIIMDAS--QDSNKQLAQVQDFITQKVDAIVLAPTASAGIAPAV 127 Query: 119 Q-KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + A +PV + + VKS V + G +Y + V ++ + Sbjct: 128 DLAKKAGIPVFTIDIKAEGD-VKSHVATDNYAGGKLAAKYAAEKVLNGKGKVAIITYSEV 186 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 + +GF+ A+A P +++VD+ E NL Q++L + P++D++ A+ Sbjct: 187 QSCV-DREKGFKDALAEYPNIKVVDVENCSGSAEKAANLTQDILLKFPDLDLIF--AVGD 243 Query: 237 EAAMGEGRNLKT---PLTVVSFYLSHQVYRGLKR-GRVIMAASDQMVWQGELAVEQAIRQ 292 A+G +K + V+ F + + + +K G + G ++ Sbjct: 244 PFAVGAVSTIKAAGRNVKVIGFDGNPEAIQEIKNHGLWVADVVQHPDQIGGKVIDLIADY 303 Query: 293 LQGQSVSDNVSPPILVLTPKNAD 315 G+SV V P ++ NA Sbjct: 304 FNGKSVPPQVLIPPTIVDASNAK 326 >UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSL0_9FIRM Length = 389 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 56/312 (17%), Positives = 110/312 (35%), Gaps = 25/312 (8%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQ---EAARRYGVDLKV--LEAGGYSQLATQQA 93 K+ + + ++ W + G + E A G L V G S Q + Sbjct: 86 TKSSDEYSFAGNVKAFENVVWQEIANGYEGFAEDATAAGCKLSVDTTSPMGESDEEGQLS 145 Query: 94 QIDQCKQWGAEAILLGSSTTS--FPDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQM 150 + + G A+LL + + P ++ A +PV + N + + VG + Sbjct: 146 ILKDQVRKGVNAVLLSPISDANCLPGIEAAHEADIPVYAVNNEFNGADM--FVGPNSLEQ 203 Query: 151 GYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG--SPVRIVDIALGDND 208 G ++ + G +V ++ G ++ +GF A S +++V D D Sbjct: 204 GQLAAEWVNEKLGGSG-DVAIVMGMAKTAVTRNRTQGFEEWFADNDSDIQVVAKQNADWD 262 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-------TPLTVVSFYLSHQV 261 +++ L+ +P++ + A+G +K + V+ + Sbjct: 263 RSQAKDVAATFLKTYPDLKAIFCN--NDVMALGVIEAVKEADLTLNKDIYVIGCDGQSEA 320 Query: 262 YRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 Y ++ + ++G +A E R L GQ+V V P +L N D Sbjct: 321 YDSIRANEMAATIDTFPYYEGYMAAEVCYRSLIGQTVPRVVFTPSKMLDSTNVDNTPEEN 380 Query: 322 SLSPGGFRPVYF 333 G PV+ Sbjct: 381 I---GWTDPVFE 389 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 120/285 (42%), Gaps = 13/285 (4%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 A+ K+ ++ + +++ G ++ A + D+ ++ G + + Q A ++ Sbjct: 29 AQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLIVTDGNNDASKQVADVESLIA 88 Query: 101 WGAEAILLGSST--TSFPDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRY 157 G + +++ T P +++ A + V+ L ++ P V VG +G G + Sbjct: 89 QGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTP-VTVHVGGENLPLGVGAGEF 147 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLL 216 L + +GK N++ + G A + + +GF AIA P +++V D + + Sbjct: 148 LAKKLNGKG-NIIELQGTAGASATIDRNKGFAEAIAKHPDMKVVASQNCDYTRDKAVKFM 206 Query: 217 QEMLERHPEIDVVAGTAIAAEAAMG-----EGRNLKTPLTVVSFYLSHQVYRGLKRGRVI 271 ++M++R + A A E A+G E + VV + +K+G++ Sbjct: 207 EDMVQRFGPGQIQAVYAHNDEMALGAIQVLEAAGRLNEVAVVGIDGQETAFEAVKQGKLA 266 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 V +E A + +G+ V + ++ P + +TP N Sbjct: 267 ATFVYPFV--APEGIETAYKVAKGEEVPETITLPTVSVTPDNIAD 309 >UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium RepID=D2Q6W7_9BIFI Length = 327 Score = 167 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 50/329 (15%), Positives = 121/329 (36%), Gaps = 20/329 (6%) Query: 8 LLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQ 67 ++L + AF+ L Q + + +++ + S+W+S++ G Sbjct: 6 YIALAAVAAFTVAPLSACGAGQSNGSE-------SKNYEIAMVAKGFSQSFWVSVHQGAD 58 Query: 68 EAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST--TSFPDLQ-KQVAS 124 +AA +YG + SQ+ Q + +A+ + P +Q + AS Sbjct: 59 DAAAKYGATVTFNGPDNDSQVDKQADMVQNAINKSPDAVAIAPLDEAALTPAVQSAKSAS 118 Query: 125 LPVIELVNA--IDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSK 182 +P+ A +A + S V ++G L+ +GK ++ S Sbjct: 119 IPLFAFDTAFETNADAITSTVKTSNREVGKVAAENLIALLNGKG-KYAVIAHSQTDATST 177 Query: 183 EMVEGFRAAIAGSPV---RIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT----AIA 235 E +GF + + + ++ + D +++ +L+ +P++D + T + Sbjct: 178 ERRDGFLDYMKKNAPDMEMVGEVQYSNADQAKAQDIASAILQANPDLDAIFATNEATVVG 237 Query: 236 AEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQG 295 A + + +V + ++ G + + S G +E A++ L G Sbjct: 238 AATPVESALKSGHKVLLVGVDSGKAQQQYIRDGVISGSVSQNPYQIGYKTIENAVKSLNG 297 Query: 296 QSVSDNVSPPILVLTPKNADREHIRRSLS 324 + + + N D + +++++ Sbjct: 298 EKIDKVIDSGCFWYNADNIDDDDVQQAMY 326 >UniRef50_C0BEZ3 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BEZ3_9FIRM Length = 339 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 60/333 (18%), Positives = 123/333 (36%), Gaps = 26/333 (7%) Query: 4 LLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLN 63 ++ L + F+L D + ST ++ K+ L S+ S+W S Sbjct: 16 VILLAILFFVLT----------GDGLGEGKEGSTNSVIEKK-KVVFLTKSMDSSFWQSAY 64 Query: 64 YGMQEAARRYGVDLKVLEAGGYS--QLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQ-- 119 G A+ Y +DL G Q ID+ + +A+L + Sbjct: 65 AGAGAASAEYNLDLVCEGPDGDGEEDYEAQNEMIDRAIREQVDALLFSAIDFEKNAEAID 124 Query: 120 -KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 A + ++ + + +++ V+ +G ++ G G ++ + LN+ ++ + Sbjct: 125 RAAKAGIRIVVVDSPVNSEAVECYIGTDNYEAGCMAGEEVL-GNPAENLNIGIVNFDKST 183 Query: 179 GGSKEMVEGFRA-AIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 + +GFR + V I + I R + ML +P+I+V+ Sbjct: 184 ENGQLREKGFRDTVLKDDRVNITASINVKSTITDAREGTERMLLDNPQINVIV--TFNEW 241 Query: 238 AAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 +G G ++ VV+F + + L++G V G L +EQ Sbjct: 242 TTLGVGDAVEALGAGERTQVVAFDSNVKSIGMLEKGNVDALIVQNPYAMGYLGIEQINTL 301 Query: 293 LQGQSVS-DNVSPPILVLTPKNADREHIRRSLS 324 L GQ + +++T +N + +++L Sbjct: 302 LNGQKPEKKETATSSILVTRENMYDDKSQKALF 334 >UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria RepID=A6WVL9_OCHA4 Length = 300 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 60/297 (20%), Positives = 117/297 (39%), Gaps = 13/297 (4%) Query: 24 RWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAG 83 V + A A + A + + ++++L M++ A+ V L+V A Sbjct: 5 SLSRILFSGVALAMMAGAASAEGIGASLLTQQHPFYIALADAMKKEAQAENVPLEVSIA- 63 Query: 84 GYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVK 140 L+ Q A ++ G + I++ + + + A + VI + + V Sbjct: 64 -NQDLSKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVDVPANNVDVT 122 Query: 141 SRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRI 199 S VG F G + + + K NV ++ P + +EGF+ IA P ++I Sbjct: 123 SFVGTDNFAGGEKAAELMAKTIGEKG-NVAVIDYP-TVQSVVDRIEGFKKGIAKYPDIKI 180 Query: 200 VDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA---IAAEAAMGEGRNLKTPLTVVSFY 256 V I G E + Q +L+ +P+I + G A A+ + L+ + V+ F Sbjct: 181 VAIQPGITRPE-ALSAAQNILQANPDIVGIFGFGDDAALAAASAVKSAKLENQVKVIGFD 239 Query: 257 LSHQVYRGLK-RGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPK 312 + +K ++ + G++AVE A + ++G+ V V+T Sbjct: 240 GMEEARNAVKNDPVMVGVIAQYPDQMGKVAVETAAKVIKGEEVPAKQPIVPGVVTKD 296 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 167 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 60/302 (19%), Positives = 114/302 (37%), Gaps = 18/302 (5%) Query: 28 AQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQ 87 + + K + + +L + + +++N + AA ++ + +V+ A Sbjct: 18 VLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAAEKH-PEFEVIFADAAQD 76 Query: 88 LATQQAQIDQCKQWGAEAILLGSSTTS---FPDLQKQVASLPVIELVNAIDAPQVKSRVG 144 + Q A I+ Q G + I+ + + A +PVI L ID + +G Sbjct: 77 NSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVILLDRKIDGDKYTQFIG 136 Query: 145 VPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS-PVRIVDIA 203 MG G Y+ V + G + G + GFR I + + IV + Sbjct: 137 ADNVDMGRIAGEYIADTLLPDGGKVCEIKGLEGTSGGIDRDNGFREGIKKNDKIEIVAVN 196 Query: 204 LGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGE-----GRNLKTPLTVVSFYLS 258 D E + +EML+ + EID+ A+ A G + + V F Sbjct: 197 NADWLREKAITVAEEMLQTNDEIDLFL--ALNDPMAEGAYIAAKNAGREGDILFVGFDGL 254 Query: 259 H---QVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL-QGQSVSDNVSPPILVLTPKNA 314 R + GR+ + + G A+E A + L +G+ + ++ ++TP NA Sbjct: 255 PTPDGGIRSVMDGRL--SMTQVYPTGGTEAIESAYQLLVEGKELDKTLTLTSEIVTPDNA 312 Query: 315 DR 316 + Sbjct: 313 EE 314 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 123/329 (37%), Gaps = 18/329 (5%) Query: 2 RVLLFLL--LSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYW 59 RV+ LL L++ L A +++ L +A + K + + +L + +W Sbjct: 4 RVVSILLTGLAVLSLAACTSNGLEAASATNDNAKEAEAGTEKKEGISVYWVGKTLNNPWW 63 Query: 60 LSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS--STTSFPD 117 +S++ Q+ A GVDL + L Q + I+ + A+AI++ + S P Sbjct: 64 ISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKADAIVVSAASSDGVIPA 123 Query: 118 LQKQ-VASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 ++K A + ++ I D + + VG Y+ G+Y+ + G+ V ++ G Sbjct: 124 IKKAREAGIKIVNFDTRISDTSVIDAFVGGDDVAGAYKAGKYICEQLGGEG-EVAIITGL 182 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 + GF A A P +++V + + ++ +L +P + + Sbjct: 183 MEQSTGVDRHAGFMQACAEYPGIKVVAEQGAEWSSDKAADVTTNILTANPNVKAIFAC-- 240 Query: 235 AAEAAMGEGR------NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 + A+G L +V + G + S + +G + V+ Sbjct: 241 NDQMAVGMVNAAKAAGKKADDLILVGYDGILDAVNMTMDGDLDAFVSLPNLDEGAMGVKL 300 Query: 289 AIRQL--QGQSVSDNVSPPILVLTPKNAD 315 A + + ++T + D Sbjct: 301 ATALVMNSDYHYDREILYDCTLVTGEFVD 329 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 118/298 (39%), Gaps = 14/298 (4%) Query: 29 QHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQL 88 ++ + + A S+++ + ++++ M + A++ G++L ++A Sbjct: 23 NQSGTSETSQDGEGKKLVVGATMLSMQNEFIVNVHDEMDKEAQKAGIELITVDA--ERSA 80 Query: 89 ATQQAQIDQCKQWGAEAILLGS--STTSFPDLQKQ-VASLPVIELVNAIDAPQVKSRVGV 145 Q Q++ +AI++ S P + K A +P+I + + + + + VG Sbjct: 81 LKQVEQVESFIAQKVDAIIMNPCEVEASSPAVAKALAAKIPIINVNSETSS-KPSAFVGS 139 Query: 146 PWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIAL 204 + +++ GK NV++M G + +G R + P ++++ Sbjct: 140 DDVESARIAMKFIADKLGGKG-NVVMMHGYMGQAAQIKREQGAREILKQYPNLKLLAHQT 198 Query: 205 GDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR-----NLKTPLTVVSFYLSH 259 G+ D +L++ ++ + + A A E +G + LK + VVS Sbjct: 199 GEWDRAKAMSLMENWIQSY-GSQINAVFAHNDEMGLGAVKALTDAGLKDKVIVVSIDAIP 257 Query: 260 QVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 + +K+G + QG A+ AI+ +GQ P ++T N + Sbjct: 258 DALQAVKKGSLDATVFQNAEQQGAKAIATAIKAAKGQPFDKETLVPFQLVTKDNLSKF 315 >UniRef50_Q221W3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderiales RepID=Q221W3_RHOFD Length = 331 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 114/297 (38%), Gaps = 14/297 (4%) Query: 31 FTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLAT 90 VQ + K + ++ + P + ++ N G + AA + GV + + +Q +T Sbjct: 35 LAVQMNATAKDVKDLRIAVI-PKVAVPFFDDCNNGAKAAADKLGVQYQWVVPQ-NTQGST 92 Query: 91 QQAQIDQCKQWGAEAILLG---SSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPW 147 Q ++ + I + + + + + V+ + +G Sbjct: 93 QVRILEDLISKKVDGIAISVNEPKSVEAAIKKAVASGIKVVTFDSDSANSGRSMYIGTIN 152 Query: 148 FQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGD 206 G G + + G+ V ++ G A E + G + +++ P +++V + Sbjct: 153 SAAGETMGESMAKAIDGEG-EVAILTGQLGAANLNERITGIKKSLSKYPKIKVVATEGTE 211 Query: 207 NDIEIQRNLLQEMLERHPEIDVVAGT------AIAAEAAMGEGRNLKTPLTVVSFYLSHQ 260 +D+ + + + HP + + G A++ A E + K + V +F Sbjct: 212 DDLAKAVSTTESLFRGHPALKGIFGVSQVGGPAVSKVMATKEFGSKKGAVKVFAFDDLPD 271 Query: 261 VYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQG-QSVSDNVSPPILVLTPKNADR 316 +G+K G + + V G+LAVE + Q+ G + +V + V+T +N Sbjct: 272 TVKGVKEGYIQGIMVQRPVTMGKLAVEHLVDQITGKEPAPKDVDTGVNVVTSQNLGS 328 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 61/272 (22%), Positives = 110/272 (40%), Gaps = 16/272 (5%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 A ++ L +L + Y++S+ G +E A+ +DL V A ++ Sbjct: 25 AADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIVQVAEKEDSTEQLVGLVENMIA 84 Query: 101 WGAEAILL--GSSTTSFPDLQKQV-ASLPVIELVNAIDAPQVKS------RVGVPWFQMG 151 +AI++ S P QK A +P+I+L +DA ++ VGV F G Sbjct: 85 KKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDAKAAEAAGLKFNYVGVDNFNGG 144 Query: 152 YQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIE 210 Y + L + GK NV ++ G ++ G A A P ++IV + + E Sbjct: 145 YLEAKNLAEAI-GKKGNVAILEGIPGVDNGEQRKGGALKAFAEYPDIKIVASQSANWETE 203 Query: 211 IQRNLLQEMLERHPEIDVVAGT----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLK 266 + +L +P I+ + AI A A+ E L + V + +K Sbjct: 204 QALTVTTNILTANPNINGIFAANDNMAIGAVTAV-ENAGLAGKVLVSGYDGIPLAIEYVK 262 Query: 267 RGRVIMAASDQMVWQGELAVEQAIRQLQGQSV 298 +G++ Q +A+E A++Q+ Q + Sbjct: 263 QGKMQNTIDQLPKKQVAIAIEHALKQINKQEI 294 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 54/325 (16%), Positives = 119/325 (36%), Gaps = 16/325 (4%) Query: 19 ADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLK 78 AD DA +++ P + + +L + Y + + +Q+A G+ + Sbjct: 55 ADATTEVSDALVEEMKSMVPDGDYSKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCE 114 Query: 79 VLEAGGYSQLATQQAQIDQCKQWGAEAILL--GSSTTSFPDLQK-QVASLPVIELVNAID 135 + ++ + Q I+ G + I+L +S LQ+ + A++PVI L +D Sbjct: 115 IQAGSQHASVEEQLTIIENYVSQGVDGIILVPAASEGLISALQECESANIPVINLDTKLD 174 Query: 136 APQVKS------RVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFR 189 +K+ G + G G + Q + ++ G + GF Sbjct: 175 DSTLKTLGKDIPFYGTDNYVGGQLVGEEVAQ-MYPDGCKTAILRGVQGQTNDDDRYNGFL 233 Query: 190 AAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT----AIAAEAAMGEGRN 245 AG V +V + + + +Q +++ + ++ V+ I A A+ E Sbjct: 234 DK-AGDVVDLVAEQHANWETDQGYTAIQNIIQANKDLQVIYCENDLMGIGAYQAVDEA-G 291 Query: 246 LKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPP 305 L + + S+ + + + G+ + + Q + G+L V + G+ + Sbjct: 292 LTDQIKIFSYDGVTEGLQYVVDGKFVSTCAQQPIKMGKLGVANMAKIFAGKDAESYIDTG 351 Query: 306 ILVLTPKNADREHIRRSLSPGGFRP 330 ++T +NA + P Sbjct: 352 CELITSENAKQTLEETKKYTAEISP 376 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 112/319 (35%), Gaps = 25/319 (7%) Query: 4 LLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLN 63 L +L+LS L S + +++ +K + + + ++ + Sbjct: 15 LAWLVLSCVAL---SCGGPSSPTPVSSDSGESTKGSVSKG--TVGVSLLTTTNPFFNVIA 69 Query: 64 YGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT--SFPDLQKQ 121 ++ + G D++V+ G +A Q+ Q+ G AI+L + P +Q+ Sbjct: 70 DNIKSELVKEGYDVEVV--SGEFDVARQKNQVKDFIVAGHAAIVLCPCDSRGIGPAIQEA 127 Query: 122 -VASLPVIELVNA--IDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 A +PV A +V S + G Q +++ V+++ A Sbjct: 128 TAAGIPVFTADIACLAPGAEVVSHIATDNLGGGKQAAEAMIEAVGSAGGKVVILDF-KAA 186 Query: 179 GGSKEMVEGFRAAIAG-------SPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG 231 V+GF+ I S + IV GD + ++ L+ HP++ + Sbjct: 187 ESCILRVQGFKEVIDKHNSENPSSAITIVSELPGDGQKDKSYKAAEDALQAHPDLAGIFA 246 Query: 232 ----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVE 287 +A+ A AA+ + + +V F + + G++ G+ Sbjct: 247 INDPSALGARAALEKANKA-DQVKIVGFDGQPDGMQAIDEGKIFADPIQHPDQIGKRVAA 305 Query: 288 QAIRQLQGQSVSDNVSPPI 306 + +G+ V P Sbjct: 306 SIVSYFRGEEVPKEQLIPT 324 >UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional regulator n=24 Tax=Bacteria RepID=C5CZB4_VARPS Length = 315 Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 105/296 (35%), Gaps = 13/296 (4%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 +A++ + + + +W ++ G ++AA+ V + + + Q + Sbjct: 22 AQAQQEIYIPLVSKGFQHQFWQAVKSGAEQAAKDLKVKVTFEGPETEAMVDKQIDMLAAA 81 Query: 99 KQWGAEAILLG--SSTTSFPDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPG 155 +AI S + P L+K Q A +PV+ + +D+ + Sbjct: 82 LAKKPQAIGFAALDSQAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTTTTDNKAAAALAA 141 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQR 213 + + GK V L+ + + +GF I + ++IV + G D Sbjct: 142 DKMAEMI-GKSGEVALVVHDQTSRTGVDRRDGFVNRIKSAYPNIKIVSVQYGGGDQLKST 200 Query: 214 NLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRG 268 + + +L+ P + + G +A+G +K + ++ + Q + G Sbjct: 201 EITKSILQASPNLKGIFGA--NEGSAIGVVNGVKEMKRSGKVVIIGYDSGKQQKNAIMDG 258 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 + A + V G VE A++ ++G+ + V N I L Sbjct: 259 SMAGAITQNPVGMGYKTVEMAVKAIKGEKLPKVVDTGFFWYDKTNIADPKIASVLY 314 >UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9L7_LARHH Length = 330 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 54/322 (16%), Positives = 120/322 (37%), Gaps = 19/322 (5%) Query: 6 FLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYG 65 +L++ + ++++ R + H S + ++ + S + Y+ L G Sbjct: 8 WLVIGVLCGLVACSESIPRVDNRSHSAFSQSAG-QNTSPARIVLVMKSPTNPYFSELANG 66 Query: 66 MQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG-AEAILLGSSTTS--FPDLQKQV 122 A G+DL + A L Q ID+ A+AI++ + + P L + Sbjct: 67 ASRAQLETGIDLSIKVAHEDDALEQQIRLIDEVIAKHQADAIVIAPTDSIRLVPVLARAR 126 Query: 123 -ASLPVIELVNAIDAPQVKSR-------VGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 A + VI + N ++ V + + YQ L + + V ++ G Sbjct: 127 KAGIHVINIGNRLEPRIVALYGMPVVPLISIDNASAAYQVAGKLAEGL-PRGSKVAIIEG 185 Query: 175 PDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 +++ EG A + + +R+V + + ++L +P++ + + Sbjct: 186 LLGTNNTRQRTEGALQAFSEAGLRVVAKQSARWKGDEAYQVTAQLLRDYPDLRAIFCS-- 243 Query: 235 AAEAAMGEGRNLKTP----LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 A+G R L+ + + F + L + +++ QG LAV A+ Sbjct: 244 NDMMALGAARYLREKGITGVRLAGFDGITEARSALHQRQLVATIDQHASEQGYLAVRLAV 303 Query: 291 RQLQGQSVSDNVSPPILVLTPK 312 + G+ +++ +LT Sbjct: 304 DAIAGRPLAEETLVDTELLTAT 325 >UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Rhizobiales RepID=B5ZNU3_RHILW Length = 329 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 47/294 (15%), Positives = 107/294 (36%), Gaps = 11/294 (3%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGA 103 + + YW + G ++A + GV++ L A S + Q + ++ Sbjct: 34 DVTIPIIVKDTTSFYWQIVLAGARKAGKDLGVNVPELGAQAESDINGQISILENAVAGKP 93 Query: 104 EAILLGSST--TSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR----Y 157 A+++ + + + S+P+I + + D+ KS + Q G Sbjct: 94 AAVVISPTEFKALGKPIDEAAKSVPIIGIDSGADSKAFKSFLTTDNVQGGRIAADGLAAA 153 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNL 215 + + + ++++ G ++ EGF I ++++ GD N+ Sbjct: 154 IKEMTGKEEGEIVILTNLPGVGSLEQRREGFLDQIKTKHPGLKVIADKYGDGQATTGLNM 213 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMG---EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIM 272 + +++ +P++ V + + +G L + V+ F + LK G + Sbjct: 214 MTDLITANPKLVGVFASNLILAQGVGQAIAENKLGDKIKVIGFDSDDKTVGFLKDGAIAG 273 Query: 273 AASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPG 326 G ++ A+ +G+ V NV ++T N I L+P Sbjct: 274 LVVQDPYRMGYDGIKTALAVSKGEKVEANVDTGANLVTKANMADPKIDALLNPK 327 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 55/330 (16%), Positives = 120/330 (36%), Gaps = 23/330 (6%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRA---WKLCALYPSLKDS 57 +R+L +LL A + + + +T K K WK+ +++ Sbjct: 16 LRILSLILLCALTFTAC--KKNVGTPEDNAASKDENTEEKDKDEQESWKIGFSGIDMENP 73 Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST--TSF 115 Y+L+L ++E +L V + + Q +QI + G AI+L Sbjct: 74 YFLTLESAIKEEVDGKNCELIVKDPKTDPDM--QASQIQEMIDEGINAIILSPVDWEKIT 131 Query: 116 PDLQK-QVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP 173 P L+ + A + ++ + + + V + +G + G G L++ V ++ Sbjct: 132 PSLEALKEADVKIVNVDTQVKEMDYVDAYIGSDNYNAGVLCGEDLIKRC-PDGGKVAILE 190 Query: 174 GPDNAGGSKEMVEGFRAAIAG--SPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG 231 P E + GF +A + IV + + Q++L + +I + Sbjct: 191 CPTQNS-VNERITGFEETLAKAENGFEIVAREDTSGEFQKSLEAAQKILSENSDIVAIMC 249 Query: 232 ----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLK--RGRVIMAASDQMVWQGELA 285 A+ A+ AM + + + S + + LK ++ + + G+ A Sbjct: 250 GNDQMAVGAKTAMNVAE--QGQILIYGVDGSPDIKKELKKTENQIAGTVAQSPISMGKDA 307 Query: 286 VEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 + L G+ + + ++ +N D Sbjct: 308 ANTVLNILNGKDYEKEIKENVFMINQENVD 337 >UniRef50_D2BFJ9 Sugar ABC transporter n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BFJ9_STRRD Length = 345 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 50/337 (14%), Positives = 120/337 (35%), Gaps = 16/337 (4%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 V L++ L A + + A K+ + + S+W ++ Sbjct: 7 VFSLSLVAAIALVALVLGVVGGRATSSASQSAGGGMAGAASGKKIDVIIKASDSSFWQTM 66 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQ 119 G +++ +G+ + + + Q ++ G + +++ +++S + Sbjct: 67 IAGAKQSGGDFGLKVSTFGPTSETNIDQQVQLVENSISRGVDGLVIAPNSSSALNSAIER 126 Query: 120 KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLN---VLLMPGPD 176 + A L VI + + + + +G + G Q G+ + + + V++ Sbjct: 127 ARKAGLKVITVDSRVTTAS-EGFIGTDNLKAGMQAGKRMCELLKAQNKTSGSVMIESSVA 185 Query: 177 NAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 + GF+ +A + V++ +NDI + + + L + E+ V A Sbjct: 186 GIQSLVDRDSGFKQGLANNCPQVKVTLQRYNNNDINTAASQVNDALTANRELAGVF--AD 243 Query: 235 AAEAAMGEGRNLKTP-----LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 + +G R ++ + VV+F Q L G + + G V A Sbjct: 244 NNTSGVGAARAIQDNNVTDTVPVVAFDSDPQENAALAAGTIDALVVQNPYFFGYQGVLAA 303 Query: 290 IRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPG 326 G+ ++ P +V +N + ++ L+P Sbjct: 304 GMAAAGRIPPRDIDPGAVVADKRNMNDPDVKLLLNPP 340 >UniRef50_A1STY3 Transcriptional regulator, periplasmic binding protein of LacI family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STY3_PSYIN Length = 334 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 54/321 (16%), Positives = 116/321 (36%), Gaps = 22/321 (6%) Query: 6 FLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYG 65 +LL+LFM+ D ++ V + P + + + +L + ++ + G Sbjct: 19 IILLTLFMV-GCGEDAAPKFSVELKSKVIQNEP---QDKHTIALVMKTLTNPFFKEMERG 74 Query: 66 MQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDLQ-KQV 122 + A + G++L V A + + Q + + +A+++ + P L+ Q Sbjct: 75 ARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIELKVDALVIAPGDSVELIPILKHAQD 134 Query: 123 ASLPVIELVNAIDAPQVKS-------RVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 + VI + N +D K + V Y+ + L + +P V ++ G Sbjct: 135 KGIIVINIDNLLDQEYSKKVGLLNVPFISVDNELAAYKSTKVLTEKL-TQPTEVAIIEGI 193 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 A ++ G A + S +V + I+ L ++ ++P I + Sbjct: 194 RGALNAELRKNGAIRAFSESKFATLVATESANWKIDEAFELAAKLYNKNPNIGAIFCA-- 251 Query: 235 AAEAAMGEGR----NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 A+G K + VV+F Q ++ G ++ QG + A Sbjct: 252 NDMMALGVIEYLQSTGKDNVQVVAFDAIPQALNAVQSGVLLATVDQDAAEQGYQGILSAN 311 Query: 291 RQLQGQSVSDNVSPPILVLTP 311 L G+ ++ ++T Sbjct: 312 NILSGKKTPLKITIEAKIITK 332 >UniRef50_C0RMD7 Rhizopine-binding protein n=23 Tax=Brucella RepID=C0RMD7_BRUMB Length = 389 Score = 162 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 109/263 (41%), Gaps = 8/263 (3%) Query: 71 RRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVA---SLPV 127 ++ G+ ++ TQ QI +AI++ + ++S D A + V Sbjct: 77 KKEGLVKDLMITDAQGNAQTQIQQIQSMIDANMDAIVIDAGSSSALDRVIADACEKGIAV 136 Query: 128 IELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEG 187 I + +D + +++ + G + +++V GK +++M GP S + +G Sbjct: 137 INFDSLVDTENLTAKINTDSAEWGERAAQWMVDQLGGKG-KIIIMNGPAGVSVSDDRRKG 195 Query: 188 FRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT--AIAAEAAMGEGR 244 + + A + I+ + ++ + + +L +PEID V AIAA A + R Sbjct: 196 AQPVLDANKGIEIITETNTEYNVAPAQEAMTSLLFANPEIDGVLSLSGAIAAGAVLAFDR 255 Query: 245 NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSP 304 + P+ + + Q K + A+ Q W G +V A++ L+G+ + ++ Sbjct: 256 QGRDPVPITG-ENARQFLELWKEKGLKAWATMQPNWLGAFSVYAAVQALEGKDIPKSIKV 314 Query: 305 PILVLTPKNADREHIRRSLSPGG 327 P+ V+ N D R P Sbjct: 315 PLPVIDASNVDTYLARADKFPAD 337 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 124/333 (37%), Gaps = 26/333 (7%) Query: 4 LLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLN 63 + L + + A A + D + + +AK K+ L++ YW S Sbjct: 1 MFSLSAACVLALAGCASGAEQAGDVAADGGETTF--EAKDPLKIGYSVYDLQNPYWQSYA 58 Query: 64 YGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVA 123 G++ A G+++ + A S Q + G A+++ S A Sbjct: 59 AGVRAGAEEAGIEVVI--ADQKSSQQEQVSGSLDLINQGISALIITPVQPSALPSTIDAA 116 Query: 124 S---LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPL--NVLLMPGPDNA 178 +PV+ + + ++ G ++V+ G P V ++ + Sbjct: 117 HGEKIPVVVADIGTEGD-YDGYILSNNYEGGRLAAEHVVEKLGGTPGPHQVGVIELHAGS 175 Query: 179 GGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 +E V GF + IV G++ ++ Q+ML +PE+DV+ A + Sbjct: 176 VVGEERVSGFVDRLGEEENFEIVSSLDGNDTVDGGFTAAQDMLSANPELDVIY--AANDD 233 Query: 238 AAMGEGRNLKTP-------LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 +A+G R ++T T++ F S +++G + + QG+ AVE A+ Sbjct: 234 SAVGASRAMETAGVSVANGFTLIGFDGSDPALDLIEQGVMSGTVAQDPFGQGQKAVETAL 293 Query: 291 RQLQGQSVS------DNVSPPILVLTPKNADRE 317 L G+ + P+ ++T +N Sbjct: 294 ALLNGEDPGYSDEATKTIYFPVEMVTAENVAEF 326 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 161 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 109/286 (38%), Gaps = 14/286 (4%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 + K+ + D++ + GM++AA + G D+++ +A Q Q++ G Sbjct: 37 KKIKVGVSIANFDDTFLTYMMDGMKKAAEKEG-DIELEFVDAKEDIAKQMNQVENFVTQG 95 Query: 103 AEAILLGSSTTSFPDLQKQVA---SLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYL 158 + I++ TS D A ++ + + P VG + G YL Sbjct: 96 KDVIIVVPVDTSAADPMTNAAVTNGTKIVYVNRNPGNLPDGAYYVGSEEKKAGIMQMEYL 155 Query: 159 VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQ 217 + GK N++++ G + G+ + EG P ++I+D G + Sbjct: 156 AEKMGGKG-NIVILMGKLDNEGTIKRTEGVEEIAKKYPDIKILDKQTGLWQRTDGMAKTE 214 Query: 218 EMLERH-PEIDVVAGTAIAAEAAMGEGRNLKTP----LTVVSFYLSHQVYRGLKRGRVIM 272 L ++ EI+ + + A+G + LK + V+ + L G + Sbjct: 215 NWLNKYGNEINAIVSN--NDDMALGAVQALKDSGKTGIFVIGVDATPDGLAALAAGDISA 272 Query: 273 AASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 QG AVE A + G++V P ++TP+N + Sbjct: 273 TVFQDADGQGGGAVEVAKKAANGETVVKETWVPFKLVTPENINEFK 318 >UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QS72_MYCS2 Length = 348 Score = 161 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 112/308 (36%), Gaps = 10/308 (3%) Query: 18 SADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDL 77 S + P KA + + + L + D +++++ G QE A GV + Sbjct: 33 SETPAAAGEAPAAAVTTVTAPPKASKNYNIAFLQGVVGDQFYITMQCGAQEEAANLGVTV 92 Query: 78 KVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAI 134 + Q+ +D +A+L+ + P Q A + V+ + Sbjct: 93 NTQGPQKF-DPTLQKPILDSIVASKPDALLVAPTDVQAMQMPLEQAAAAGIKVVLVDTTT 151 Query: 135 DAPQVK-SRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIA 193 + P S + G + + H + V++M + +GF A+A Sbjct: 152 NDPSYAVSAIASDNEGGGRAAFEAI-KQLHPEGGKVMVMGLDPGISTTDARTKGFEEAVA 210 Query: 194 GSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI--AAEAAMGEGRNLK-TP 249 P V + ND L+ L+R P++ V + A +A G + K Sbjct: 211 EDPGFTYVGVQYSHNDPATAAQLIGAQLQRDPDLVGVFAANLFTAEGSATGIKQAGKSEQ 270 Query: 250 LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVL 309 + VV F + L+ G V + G+ V++A+ L+G S NV ++ Sbjct: 271 VAVVGFDAGPNQIQALREGTVQALVAQDPGTIGKFGVDEAVTALEGGENSPNVQTGFTII 330 Query: 310 TPKNADRE 317 T +N D E Sbjct: 331 TRENLDGE 338 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 110/281 (39%), Gaps = 14/281 (4%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 + + +L+ ++ + ++ + GV + ++A G S +TQ +QI+ Sbjct: 27 KELTIGLAVANLQADFFNQIKQSVEAEGKARGVKIITVDAQGNS--STQVSQIEDLITRQ 84 Query: 103 AEAILL---GSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 +A++ G++ P + A +PVI + + + Y+ Sbjct: 85 IDALIYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPGDTFIASDSVAGAKALAEYVG 144 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQE 218 + GK + ++ G + +GF+ + G P +++V + + + Q+ Sbjct: 145 KVTDGKG-RIAILQGQLGTTPENDRAKGFQEGLKGFPGLKVVAEQPAEWAQDKGFAVAQD 203 Query: 219 MLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMA 273 +L+R P I V G A A A+G + +K P+ VV F + + G + Sbjct: 204 LLQRDPNITVFFGRADA--MALGAAQAVKVANLSQPVVVVGFDGDVAGLKAVASGVLQAT 261 Query: 274 ASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 + Q G +AV A+ G++V ++ T N Sbjct: 262 MTQQTQKMGRMAVASALDLKAGKAVPKEQLLETVLTTKDNV 302 >UniRef50_A9KMR5 Putative solute-binding component of ABC transporter n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMR5_CLOPH Length = 334 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 55/344 (15%), Positives = 130/344 (37%), Gaps = 29/344 (8%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ LL ++L+L M+ + +A + + + L + YW Sbjct: 1 MKKLLSMMLALVMVFSLTACGSTNKSKDSS-----------EGEKTIYVIVKVLGNQYWS 49 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 + G ++A + G + ++ S + Q I A+AI++ + P Sbjct: 50 VVQAGAEKAGKDLGCKVVIVGTAAESDIEGQVRYIQDAISAKADAIVVAPLDRTALKNPI 109 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPL------NVLL 171 ++ + P++ + ++++ + + + G + ++ K + + + Sbjct: 110 SEQFKSGTPIVLIDSSVEGEDYSTALMTDNVEAGRMAAKEMIARLKAKGVAEDKEGTIAI 169 Query: 172 MPGPDNAGGSKEMVEGFRAAIAGSPV---RIV--DIALGDNDIEIQRNLLQEMLERHPEI 226 G + + ++GF + +++ DI + D DI Q+ L + + Sbjct: 170 QAGSTGSMAINDRLKGFNEYWGENAPASWKVLNDDIKINDGDISKAVAFCQDFLTTYTNL 229 Query: 227 DVVAG--TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVI-MAASDQMVWQGE 283 V G G +T LT++ F S+++ + ++ G + + G Sbjct: 230 IGVFGPNNGSTVGFVTGLTEAKRTDLTMIGFDFSNEIEQMIRGGEYDVASMVQRQYMMGY 289 Query: 284 LAVEQAIRQLQGQSVSDNV-SPPILVLTPKNADREHIRRSLSPG 326 V+ A+ G V + + +LV+ KN D E ++ ++PG Sbjct: 290 DGVKTALELANGGKVENKIVDTGVLVVDNKNVDSEDVQGIINPG 333 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 58/345 (16%), Positives = 123/345 (35%), Gaps = 37/345 (10%) Query: 2 RVLLFLLLSLFM----LPAFSADNLLRWHDAQHFTVQASTPLKA---------------- 41 R +L LL+L + L S A + KA Sbjct: 3 RKVLAALLTLTIAGASLAGCSGGKTGETTTAAQTQAETKAETKAEAKETAKESIAEVKEN 62 Query: 42 --KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 K +K ++ + ++ ++ ++E G +L V++A + Q + ++ Sbjct: 63 GGKEHYKFGFAATTMNNPFFHAIQEAIEEVVDENGDELIVIDAQ--NDAQKQISMVEDLL 120 Query: 100 QWGAEAILLGSSTTSFPDLQKQ---VASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPG 155 G + + L ++ + A +PV+ + D V + + + G Sbjct: 121 TQGIDLLFLCPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDLVNTIIVSDNYYAGELVA 180 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNL 215 +++ + V ++ P A + GF+ G +IV G D + Sbjct: 181 EDMMKKL-PEGSKVCILTSPS-AEACIKRQNGFKDKADGY-FKIVSEIDGKGDTATSLGI 237 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEGRNL----KTPLTVVSFYLSHQVYRGLKRGRVI 271 +++L+ +P++ AI +A+G + L KT + V + + G + Sbjct: 238 AEDVLQGNPDLGAFY--AINDPSAIGCVQALESQKKTDVLVYGVDGQPMGKQAISEGTME 295 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 A+ + G+ +V A + L G+SV N+ P ++ N Sbjct: 296 ATAAQSPINIGKESVAAAYKILSGESVEKNILVPTFLIDKNNVTE 340 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 130/327 (39%), Gaps = 22/327 (6%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M L L+ L +L S + + S A + ++ + +++ Sbjct: 1 MNSALRFLIPLTLLAIGS----IGCSNGSDSHSPQSDSTADSGRL-FGASFQTMNNPFFV 55 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST---TSFPD 117 L G+++ G L +L+A S Q+ + I + Sbjct: 56 DLGEGLKKELEANGDRLVILDAQFNS--LKQKNDLSDLILQNVAGIFVNPVNWEGLKGSL 113 Query: 118 LQKQVASLPVIELVNAI---DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 L+ +P+I + + D + V + G + L + + K V+L Sbjct: 114 LEANRKKVPIIIVDAPVKKADEELIVCTVASDNVRAGELAAQALAK-VNPKARLVVLHLS 172 Query: 175 PDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG-- 231 + A + V GF+ + P ++I+D+ E R ++++++ R+P++D V Sbjct: 173 VNKA--CIDRVAGFKTELEKHPEMKILDVQEAQGTTEGARPVMRDLIGRYPDLDAVFAIN 230 Query: 232 --TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 A+ +A+ L +T+V+ S + ++ G++ ++ G++A E+ Sbjct: 231 DPNALGVISALDSANKL-DQVTIVTVDGSQAGIKAIQAGKLHSTSAQFPREIGKIAAEKM 289 Query: 290 IRQLQGQSVSDNVSPPILVLTPKNADR 316 + L+G+ V +V + ++T +NA++ Sbjct: 290 LAHLKGEPVEKDVKVRVELITAENAEQ 316 >UniRef50_A6M1U2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M1U2_CLOB8 Length = 315 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 122/289 (42%), Gaps = 18/289 (6%) Query: 36 STPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQ 94 T + K + + +L + + +S+N +QE +++ + + +AGG + Q+ Sbjct: 29 RTNSQKKDTFIIGMSQANLYEPWRISMNKEIQEEVKKHSNIKIIFKDAGG--DVEKQRED 86 Query: 95 IDQCKQWGAEAIL--LGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGY 152 I+ +GA+ ++ + +S P ++K SLPVI L A+D +G +G Sbjct: 87 IEDLMNFGADLLIVSINNSKELTPTVRKAYESLPVILLDRAVDGYDYTLYIGADTRSIGV 146 Query: 153 QPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVD-IALGDNDIEI 211 Q G + A NV+ + G ++ KE+ +GF+ AI+ +D +G+ Sbjct: 147 QAGELIANLAGNNKANVIEVQGILDSSTDKEITDGFKEAISNYKNIAIDRTIVGNWQKNE 206 Query: 212 QRNLLQEMLERHPEIDVVAGTAIAAEAAMGE----GRNLKTPLTVVSFYLSH---QVYRG 264 + L+E+L+ +++++ A + A+G + ++ Sbjct: 207 TEDKLEEILKDDKDVNIIF--AHSDYMALGAYYATVSTNSKNIKIIGVDGLEGPQGGIDL 264 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQ-SVSDNVSPPILVLTPK 312 ++ G + + + G+ AV+ AI+ L + + V +T Sbjct: 265 VRNGILQGTFTCKTG--GKEAVDYAIKILNKKDDIPKKVLLKCNKITKD 311 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 99/292 (33%), Gaps = 19/292 (6%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + K+ L S + ++L G+++ A+ GV++ VL+A G +TQ +QI Sbjct: 35 TKTKKIAVLLYSQSFEFMVALGQGVKDKAKELGVEVTVLDAKG--DSSTQISQIQDQLAQ 92 Query: 102 GAEAILLGSSTTS--FPDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 G + I+L + ++ P +Q A V + + I + V + G L Sbjct: 93 GVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDSVIPGDIADAAVAFDNEKAGKLGAEAL 152 Query: 159 VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQE 218 + K VL G A + +GF I P V + +L + Sbjct: 153 AKLMGEKG-TVLEYQGAKGAYHAILRGKGFNDGIKQFPGIKVIGRDAQWTADNALSLTVD 211 Query: 219 MLERHPEIDVVAGTAIAAEAAMGEGRNLK-----------TPLTVVSFYLSHQVYRGLKR 267 I+ + + E G L + +V + ++ Sbjct: 212 NFTADSSINGLF--SHNDEMVRGIVSGLSQINKDAPVGAANHIPLVGVDGTPLALDRIRN 269 Query: 268 GRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHI 319 G G LA++ + L G+ V ++T +N D + Sbjct: 270 GVQDATMDQNPFEMGALALQAQVDLLDGKQVPKMQLTDTKLITKENVDDPTL 321 >UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z738_9FIRM Length = 369 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 117/315 (37%), Gaps = 17/315 (5%) Query: 17 FSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY--- 73 F+ D + + +K K K+ A+ S + +W + G +++ + Sbjct: 45 FNPDTVKDSKTIEDIRKDNGDEVKVKGGLKMGAIAKSFSNEFWRNFKNGYEQSEKVLKDA 104 Query: 74 --GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL---LGSSTTSFPDLQKQVASLPVI 128 V +K+ S QQ D G A++ + S + + +P I Sbjct: 105 GVDVSIKIDGTTDESDEIGQQTMTDNLVNQGYNALMLSPISDSNLTASVDNAKGKKIPTI 164 Query: 129 ELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGF 188 + + + VG +Q G ++ + K +V ++ G A ++E GF Sbjct: 165 NVNDGL-IASADYFVGPDAYQNGELAAEWVSKQLGDKG-DVAIVIGMAKAFAARERTAGF 222 Query: 189 RAAIA--GSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL 246 + I S + +V D D + + L ++++P++ + + A+G + Sbjct: 223 KGWIKDNNSGLNVVAEQNADWDRQKAKELASTWIQQNPDLKAIFCN--NDDMALGVVEAV 280 Query: 247 ---KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVS 303 K + VV + Y ++ G++ + ++A E +R L GQ + Sbjct: 281 EEAKKDILVVGVDGIGEAYDSIRAGKLDATVDSFGYYMSQVATEVTLRVLAGQDIPRVTH 340 Query: 304 PPILVLTPKNADREH 318 P ++ N D++ Sbjct: 341 TPQALIDKTNVDKDA 355 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 112/308 (36%), Gaps = 17/308 (5%) Query: 37 TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 TP+ K+ +L+ +++ L G + AA+ G +L L+A G + Q I Sbjct: 26 TPVAHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFLDANG--DVNKQNNDIQ 83 Query: 97 QCKQWGAEAILLGS--STTSFPDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 + +++ P + +PVI + +I+ V + +G +MG Sbjct: 84 DLLTRKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSINGGGVTAHLGRDNVKMGKA 143 Query: 154 PGRYLVQWAHGKP---LNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIE 210 G ++ K V+ + G +GF A+ GS +IV + Sbjct: 144 VGDAVLAELKKKGTTRGKVIEIQGDAGGTVMAARRDGFHDALKGSGFKIVAGPYAEYTRA 203 Query: 211 IQRNLLQEMLERHPEIDVVAGTAIAAEAAMGE----GRNLKTPLTVVSFYLSHQVYRGLK 266 +Q++L+ HP++ VV A + AMG K + V + + Sbjct: 204 NAVTAMQDLLQAHPDVKVVY--AHNDDMAMGALKVLAEAGKKDVFVAGVDGLSEALASMA 261 Query: 267 RG-RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 G + + A + + G++ V+ A G+ V V +T N Sbjct: 262 GGDQYVATALNDPRYLGDMTVQTARAIKAGKKVPAFVDAGTKAVTKANVGEFKRTGLF-- 319 Query: 326 GGFRPVYF 333 +RP F Sbjct: 320 AEYRPAVF 327 >UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YA80_DICT6 Length = 338 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 11/262 (4%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + + + S+ YW + G+++AA+ GV + Q +Q++ Sbjct: 22 SKEIHVAVIGKSV-HPYWAEVELGVKQAAKDLGVKATFFVPQKE-DIPAQISQMESFIAM 79 Query: 102 GAEAILLGSST--TSFPDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 G + I + S P ++K +A +PVI L + +G + G G + Sbjct: 80 GVDGIAIAPSDPTAIAPTIEKAMAKGIPVITLDTDAPQSKRLVYIGTDNYSAGKIAGMVM 139 Query: 159 VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEI---QRNL 215 K V + G A S E + GF IA + +V D E L Sbjct: 140 NDLLGIKGGKVAIGTGSLTAMNSLERIRGFMDGIASNKRIVVVTKPALCDFEDTGRAVTL 199 Query: 216 LQEMLERHPEIDVVAGT-AIA--AEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIM 272 ++ L +P++ G A A A + + +V F + + + +K G + Sbjct: 200 AEQALLTYPDLRGFFGVYAFNGPAAAKAVKAAGKVGQVLIVCFDTTAEHMQLIKEGVISA 259 Query: 273 AASDQMVWQGELAVEQAIRQLQ 294 + G +VE + Q Sbjct: 260 TVGQRPYMMGYKSVEVLTKMAQ 281 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 116/312 (37%), Gaps = 23/312 (7%) Query: 22 LLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLE 81 + + A A L +K K+ + + L+ ++ A + G L + + Sbjct: 28 AIGFGVATAHADDALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKCGWQLVMTD 87 Query: 82 AGGYSQLATQQAQIDQCKQWGAEAILLGSSTT---SFPDLQKQVASLPVIELVNAID--- 135 A + + Q + I + ++ + LQ + A +PVI + +D Sbjct: 88 ANSSN--SKQVSDIQNMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDVDQSV 145 Query: 136 ---APQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI 192 + +G + G++ +LV+ GK ++ + G A + + +GF I Sbjct: 146 AKAGRDYITFIGSDFIDQGHRAADWLVKATGGK-AKIIELEGTTGASAANDRKKGFDEII 204 Query: 193 AGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK---- 247 A +P + I+ GD + R +++ +L+ HP++ V A E A+G +K Sbjct: 205 AKNPGMTIIASQSGDFARDKGRQVMETLLQAHPDVTAVY--AHNDEMALGAIAAIKAAGK 262 Query: 248 ---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSP 304 + +V+ + + G + + G LA + A R +G+ + V Sbjct: 263 QPGKDIQIVTIDGTKGGMDAIAAGELGASVQSSPF-FGPLACDVAQRYAKGEKIPTWVKV 321 Query: 305 PILVLTPKNADR 316 N + Sbjct: 322 SDKFYDKSNVQQ 333 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 116/284 (40%), Gaps = 16/284 (5%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 + A Y ++ + ++ +N +++A G L L+ + Q QI +A Sbjct: 42 RFGATYMTMNNPFFEVINNEIKKAVEANGDVLITLDP--ILDVDKQNEQILDLIDQRVDA 99 Query: 106 ILLGSSTTSFPDL---QKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQW 161 I + ++ + A +PVI + I D V + + G + ++ Sbjct: 100 IFVNPIDAKKIEIGLKAAKKAKIPVIVVDAPIYDESLVNCSIASNNYDAGVLCAKDMMSK 159 Query: 162 AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIA-GSPVRIVDIALGDNDIEIQRNLLQEML 220 ++L+ A + E ++GF IA + ++++ A D IEI +++ML Sbjct: 160 RDH--AKIILLEH-ATAKSAVERIQGFLDTIASNANYQVINRADCDGQIEIAMPTMKQML 216 Query: 221 ERHPEIDVVAGTAIAAEAAMGEGRNLK----TPLTVVSFYLSHQVYRGLKRGRVIMAASD 276 + P++DVV A+ +A+G ++ + V S V + G + A+ Sbjct: 217 KETPDVDVVM--ALNDRSALGALAAIESMEIDNVLVYGVDGSPDVKELINTGLIQATAAQ 274 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 V G+LA ++A L+ + + + P+ +++ N + Sbjct: 275 SPVKMGQLAYQKAKALLENKKIEKKIEVPVELISRDNISNFELT 318 >UniRef50_C5EI71 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EI71_9FIRM Length = 357 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 53/317 (16%), Positives = 109/317 (34%), Gaps = 6/317 (1%) Query: 16 AFSADNLLRWHDAQHFTVQASTPLKAKRAWK-LCALYPSLKDSYWLSLNYGMQEAARRYG 74 A + + T + A A K + + S ++ + G ++AA +G Sbjct: 37 AQTEAAKTEAEKTEAGTEEKKEEQPASEATKVIGVIPKSTLFDFYKMVRQGAEDAAAEHG 96 Query: 75 VDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAI 134 + + ATQQ ++ G +A+++ S + +PVI + + Sbjct: 97 YTINYQGTNSSTDTATQQNIVEDMMMSGIDALVISSIDAKAINDTMASLDIPVITFDDEM 156 Query: 135 DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG 194 + + V V Y+ + V ++ ++ GF + Sbjct: 157 NPSVCLTTVSVNHEAAAAAGAAYIAEKL-PDGGKVAVVSAEAGTDVIQQRDRGFENELKK 215 Query: 195 SP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGE--GRNLKTPLT 251 +V + + D E N +Q++L HP++ V A A + + +T + Sbjct: 216 HDGFELVGVYHTEGDREKAANTMQDLLSEHPDLVAVFCCNEGASAGVSKILKDEGRTDIL 275 Query: 252 VVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQS-VSDNVSPPILVLT 310 V + S ++ + G + S G +V AI + G+S D ++ Sbjct: 276 AVGYDSSEELINNIYDGSLDALISQNPYGLGYNSVTAAIEAIDGKSDFPDVTESAYWLVD 335 Query: 311 PKNADREHIRRSLSPGG 327 N + + L P G Sbjct: 336 ADNIHDPEVIKILDPLG 352 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 54/285 (18%), Positives = 106/285 (37%), Gaps = 15/285 (5%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 K+ K ++ + ++ L ++ + G L ++ ++ Q QI+ Sbjct: 37 TKKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGDQLITMDPA--MDVSKQIDQINDMIT 94 Query: 101 WGAEAILLGSSTTSF--PDLQK-QVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGR 156 G EA+ L P L+ + A++P+I + D V + VG G G Sbjct: 95 QGVEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEVKDMNYVTAYVGSDNKNAGKVCGD 154 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLL 216 LV+ + ++ P + + GF++AI G IV G D++ L Sbjct: 155 DLVKRY-PNGGKIAILNCPTMNSI-NDRIAGFKSAIEGKNFTIVAEQDGKGDLQTSMKLA 212 Query: 217 QEMLERHPEIDVVAG----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKR-GRVI 271 ++L+ H +I + G TA+ A AA + K + + S + + G+ + Sbjct: 213 DDILQSHSDIVAIMGGNDPTALGALAACKSAKQSK--ILIYGVDGSPDAKKEIASGGQFV 270 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 + G + E + L Q+V ++ N + Sbjct: 271 GTGAQSPKQIGVKSAELGYKVLNKQNVEKKTPVQTFLINKDNVSK 315 >UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG6_9FIRM Length = 331 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 122/325 (37%), Gaps = 14/325 (4%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 + ++ +LF+ D+ DA+ + + K + S + ++ ++ Sbjct: 10 LCTAMVSTLFVGCGGGNDSADTSADAETTEKTEESADAGSGSHKCGFVVGSFEHVFYQTI 69 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--PDLQK 120 G++ A+ G++ V +A +AT ++ G EAI L + + P ++ Sbjct: 70 RDGIESKAKELGMEAIVTDAELDPNIAT--NKVQDLTAQGCEAIALSCNDAAGVKPAIEN 127 Query: 121 QVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAG 179 A + + + D+ + VG ++ G G+ L++++ V ++ P A Sbjct: 128 ADAEGVAMFTFDCSTDSEAINCFVGTDNYKGGQLGGQELLKYSED-GDTVGIICYP-TAS 185 Query: 180 GSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA-IAAEA 238 + G + +V D + +++ ML +P++ V AA Sbjct: 186 SCLDRQNGALDVLKDEDRTVVYDNDYQGDANKAQEIMENMLTANPDMAAVFCVGDPAATG 245 Query: 239 AMGEGRNLKTPLTVVSFYLSHQVYRGLKR----GRVIMA-ASDQMVWQGELAVEQAIRQL 293 A+ + + ++ F + + + G+ ++ + GE VEQ + L Sbjct: 246 ALAAIKAAGSDCKIIGFDGNPEAKEAISDTEGNGKWWVSEIAQNPTLIGETIVEQMQKYL 305 Query: 294 -QGQSVSDNVSPPILVLTPKNADRE 317 +G+ + + V+ N E Sbjct: 306 DEGKVDAAEIPIDPYVIDASNVADE 330 >UniRef50_C6BZX1 Putative D-ribose-binding periplasmic protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZX1_DESAD Length = 312 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 104/288 (36%), Gaps = 8/288 (2%) Query: 37 TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 P + + + + ++W + G A + L ++ + Q+ ++ Sbjct: 4 FPCASYAQKTIVTIPKATIFNFWRIVCMGAHAAVEDSDITLIWRGPRVENKPSAQRHLLE 63 Query: 97 QCKQWGAEAILLGSST--TSFPDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 +AI+L T P ++K A + ++ + + + + + ++ G Sbjct: 64 YYIDQKVDAIVLAPMDRKTLNPYIEKASKAGIKIVIIDSPVTTDSIDGFIATDNYKAGAM 123 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPV--RIVDIALGDNDIEI 211 + G VL++ + G +GF + I+ I + D Sbjct: 124 GAELMASKLKGTGP-VLVVGHSPDNGSCALREKGFIDKMQALSPGRTIITIHMLDGSERE 182 Query: 212 QRNLLQEMLERHPEIDVVAGT--AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGR 269 R +E+L P I V T A + +T + ++F + ++ G++ + Sbjct: 183 TRLSTKEILTNTPSIAGVFTTNEATSDGVLHVMQDRNETHIPFIAFDYNQKLLEGVRNKQ 242 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 + + + G V AI L G+ +S ++ P+ ++T N D Sbjct: 243 IEALITQRPYALGFFGVRSAIELLNGKKISKHMESPVTIITNDNIDEA 290 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 111/294 (37%), Gaps = 18/294 (6%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 K+ + K+ L S + +W ++ +EAA G++++V EA Q ++ Sbjct: 85 KSGQGEKIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTMV 144 Query: 100 QWGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAID-------APQVKSRVGVPWFQ 149 G +AI+L + + A +PVI L +D + ++ V + + Sbjct: 145 TMGFDAIILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKITVNFEE 204 Query: 150 MGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS-PVRIVDIALGDND 208 G ++ V ++ G + AG S G + + V +V D D Sbjct: 205 QGSTVANDMISRMED-GGKVAILAGLEGAGQSVGRTNGAKTVFENTEGVELVAAQACDWD 263 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK----TPLTVVSFYLSHQVYRG 264 E +++L HP++ + A+ + L+ + V + Sbjct: 264 TEKAYEATKDILTAHPDLKGIFAC--NDNMALAAVQALQEMGNKDVMVYGVDYTTDAKAA 321 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 ++ G ++ + + + A E A+ +QG++ D V P+ ++T N Sbjct: 322 IEDGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKDPVYLPLTLVTQDNVADFE 375 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 105/303 (34%), Gaps = 18/303 (5%) Query: 26 HDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGY 85 + K + + + + + GM++ A G DL +L+A Sbjct: 26 TEGSDSKGDDKKASKKDGGYTIGCTVYYMT-EFVTLMTEGMEKKAEELGCDLVMLDAQ-- 82 Query: 86 SQLATQQAQIDQCKQWGAEAILLG--SSTTSFPDLQK-QVASLPVIELVNAIDAPQVKSR 142 Q QI+ + I++ S P ++ A +P++ + + + Sbjct: 83 QDAQNQITQIENLIAQKVDVIIVAAVDSDAILPAIEMCDDAGIPLVGVNMLFNTEEPYHY 142 Query: 143 VGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIV 200 VG G + + G+ NV+++ GP + +EG + + + ++ Sbjct: 143 VGPDDVLAGELEMQNAIDEIGGEG-NVVILEGPIGQSAQIQRLEGNQNILDKYEGKINVL 201 Query: 201 DIALGDNDIEIQRNLLQEMLERHP-EIDVVAGTAIAAEAAMG-----EGRNLKTPLTVVS 254 + E L++ LE +ID + A E A+G E L + V Sbjct: 202 ADQTANWSREEALTLVENWLETFSGKIDAIV--AHNDEMALGAIQALEAAGLTDKIVVTG 259 Query: 255 FYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVS-PPILVLTPKN 313 +K G ++ +G AV++A L+G+ +S + +T N Sbjct: 260 VDAILDGCNAVKDGTLLGTVYQDAGLEGSEAVQKAYDVLEGKVTEKELSYIDMKWITKDN 319 Query: 314 ADR 316 D Sbjct: 320 VDE 322 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 127/329 (38%), Gaps = 23/329 (6%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + L L L M + +A + + K + + K+ P + ++W + Sbjct: 3 KRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGD-----KKEESVKVAFSIPEMFSTFWEA 57 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS--STTSFPDLQ 119 YG ++ A+ YG + +L+ G L Q +Q+ G +AI + + P L Sbjct: 58 CWYGFEKQAKEYGWEATLLDPQG--DLELQISQLQSQVTKGVDAIGVAPIENEAIGPALT 115 Query: 120 K-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 A +PV + + V S + + G LV+ G+ ++VL++ G + Sbjct: 116 TVNEAGVPVFCVDRRGEGE-VVSTLETDNVKAGEAMAEQLVKDY-GEDVDVLIIQGVLSD 173 Query: 179 GGSKEMVEGFRAAIAGSP-VRIVDI-ALGDNDIEIQRNLLQEMLERHPEIDVVAGTA--- 233 + + +G + + + IV + G+ E + LE +P++DV+ Sbjct: 174 TPTLDRTQGVKNVLEKYENITIVGEPSAGEYSNEAALATTKNFLETNPDLDVIFTCTDAL 233 Query: 234 -IAAEAAMGEGRNL-----KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVE 287 AA+ E + + + S + +V + ++ G V S + G V+ Sbjct: 234 VPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFSQYPIQFGIDTVK 293 Query: 288 QAIRQLQGQSVSDNVSPPILVLTPKNADR 316 L G V + V V+T +N D+ Sbjct: 294 SMKTYLDGGKVEEKVYYNGDVVTDENIDK 322 >UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HPK6_GLUDA Length = 336 Score = 157 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 59/291 (20%), Positives = 109/291 (37%), Gaps = 16/291 (5%) Query: 47 LCALYPSLKDSYWLSLNYGMQEA-ARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 + + + +YW ++ G +A A+ + S +A Q + A Sbjct: 49 IAVIVKTANSNYWQNVRKGAADAVAKVENYTMTFQGPTSESAVADQVNMVADAVTQKVAA 108 Query: 106 ILLGSST--TSFPDLQKQ-VASLPVIELVNAIDAPQVK---SRVGVPWFQMGYQPGRYLV 159 I+L S P ++K A +PV+ + + I K S + G G+ +V Sbjct: 109 IVLAPSDPDALVPSIRKAWEAHIPVVLIDSMISDSGAKYYQSFLATDNEAAGEALGKEMV 168 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQE 218 G+ V +M G V GFR IA ++IV + + + N + Sbjct: 169 DHV-GQTGKVAIMSYVPGVGSEIGRVGGFRKYIAEHSHIQIVGPFYSQSQMALAMNQTTD 227 Query: 219 MLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMA 273 +L +P++ + A A+G GR ++ L ++F + ++ G + Sbjct: 228 VLASNPDLKGIF--AANEMTAVGVGRAIQQAGKSGKLYAIAFDGNEDEQGFVRSGTFQLL 285 Query: 274 ASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 A G VE AI L G + V+ ++ +T N D ++ L Sbjct: 286 AVQGSYAMGAKGVETAIGVLTGAKPTKYVNTGVVFVTSANLDSPEAKQVLY 336 >UniRef50_B8CZL4 ABC-type sugar transport system, periplasmic component n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZL4_HALOH Length = 318 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 111/291 (38%), Gaps = 16/291 (5%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 + + + SL + +L Q+ ARR GV L+ + + Q + Q Sbjct: 18 PPKPLTIAFVPKSLDNPIFLDTLEAAQKEARRLGVRLEWVAPFT-TSTEGQIKVVKNLIQ 76 Query: 101 WGAEAILLGSSTTSFPDLQKQVA---SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRY 157 + I++ ++ ++ A + V + + VG ++ GY+ G+ Sbjct: 77 RRVDGIIISANDSNALKEIINKAVKSGIAVATFDSDVPGSDRLFYVGTDNWRAGYELGKA 136 Query: 158 LVQWAHGKPL-----NVLLMPGPDNAGGSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEI 211 L+Q K + V+++ G A K+ V+GF A+ + I DI ++D ++ Sbjct: 137 LLQVLKRKGIKTEKYKVMVLSGGKEALNLKKRVKGFAKAVEEEIDIEIKDILYCNDDFQL 196 Query: 212 QRNLLQEMLERHPEIDVVA-----GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLK 266 L++ ++ HP+ID++ + +A + + + + + K Sbjct: 197 ANELVENYIKSHPDIDIILFVGGWPFYVPPDAMPRFQKWARQGGIAIGIDIFYSALVLQK 256 Query: 267 RGRVIMAASDQMVWQGELAVEQAIRQLQ-GQSVSDNVSPPILVLTPKNADR 316 G + G+L++ +R L+ GQ + I N DR Sbjct: 257 EGMIQYLVGQDFSGMGQLSLRYLVRFLRSGQKPPVIIKTGIEHANTSNIDR 307 >UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein n=1 Tax=uncultured bacterium RepID=C6L1I6_9BACT Length = 324 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 63/299 (21%), Positives = 112/299 (37%), Gaps = 22/299 (7%) Query: 35 ASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQ 94 A TP A + L +L + +W ++ G++ A+ GV + Q Sbjct: 19 AVTPAMADGEY--GVLMKTLANPFWGAMGQGVEAGAQEAGVAYYMQAVESDQAAEPQLNV 76 Query: 95 IDQCKQWGAEAILLGS--STTSFPDLQ-KQVASLPVIELVNAIDAP-------QVKSRVG 144 + + A++ + ST P L+ Q A + V++L +D ++ R+G Sbjct: 77 CNTMLERNPVAMITAAINSTNLLPCLKSAQDAGIKVVDLDGNLDQAILDAEGIEITFRIG 136 Query: 145 VPWFQMGYQPGRYLVQWAHGKPLN-VLLMPGPDNAGGSKEMVEGFRAAIAGSP--VRIVD 201 G Q Y+V VL++ G ++ GF +A + IV Sbjct: 137 SDNVLAGAQGAEYVVSQLGADATGPVLVIEGLSGNITGQKRASGFADKLAELAPGLEIVA 196 Query: 202 IALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGE-----GRNLKTPLTVVSFY 256 GD D N+ ++L R+P + VA A A+G + +V Sbjct: 197 SLPGDWDRGKAANITNDILTRNPGL--VAIFAANDGMALGAVESVFAAGKGGEVIIVGVD 254 Query: 257 LSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 + + + GR+ + + G+ AVE ++G V+ + P LVLT D Sbjct: 255 GNSDAVKSINEGRLTASVAQLPYLVGKQAVENVKIAVEGGEVAKEIIVPTLVLTKDVMD 313 >UniRef50_B5ZRZ8 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Rhizobium RepID=B5ZRZ8_RHILW Length = 305 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 108/289 (37%), Gaps = 10/289 (3%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQID 96 P A+ KL + ++ ++ ++ A+R GV++ + + + Q AQI+ Sbjct: 19 PSLAQEPIKLGFITK-FPVPFFATMENAAKDYAKRNPGVEIIYGQGTSATDIEGQIAQIE 77 Query: 97 QCKQWGAEAILLGSSTTSF-PDLQKQVA-SLPVIELVNAI-DAPQVKSRVGVPWFQMGYQ 153 G + I L + L K VA + V+ + N I D + F G Sbjct: 78 SMVTRGVQGIALTPVDPTVSTALDKAVASGVKVVLMDNNIPDWKGRTALATTNNFAAGKI 137 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQR 213 G YL + ++ G + V+G + G V+IV + E+ Sbjct: 138 AGEYLKTVLKA-GDTLGILEGVPGVPALDDRVKGMLEGLQGLDVKIVGKGATNCTEELGI 196 Query: 214 NLLQEMLERHPEIDVVAGTAIAAEAA----MGEGRNLKTPLTVVSFYLSHQVYRGLKRGR 269 ++ +++L ++P++ + A + + +V F LK G Sbjct: 197 SVAEDLLTKNPDLKAIYAACGPPAAGAARAIKNSGTANDKIVLVGFDFCCGEEEALKSGV 256 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 + + EL V+ ++ ++G+ V + ++TP+N + Sbjct: 257 EDASVAQFPTKMAELGVDALVKSIRGEKVESLIDSGAALVTPENMAQFK 305 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 107/282 (37%), Gaps = 12/282 (4%) Query: 32 TVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 Q +T +KA +K+ + + + Y ++ + G++ A + G + Q Sbjct: 67 GAQIATSVKAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTADSVEEQ 126 Query: 92 QAQIDQCKQWGAEAILL---GSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWF 148 ++ +AI++ S+ + Q A + V+ + R GV ++ Sbjct: 127 VQLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAEDTFL-RTGVDYY 185 Query: 149 QMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS-PVRIVDIALGDN 207 + GY + + GK +++ GP A + E + G ++ + IV + Sbjct: 186 ESGYTMAKAVADKLGGKG-KFIILEGPAGASNAIERLNGINTGLSEYEGIEIVASQTANF 244 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT----PLTVVSFYLSHQVYR 263 ++ + +++++ +ID V E+A+G + L + V F S Sbjct: 245 KRTEGMSVTENLIQQYTDIDAVIAC--NDESALGAVQALTAANMSDVLVCGFDGSVDATN 302 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPP 305 +K G + + G +A A++ L ++ + P Sbjct: 303 AVKEGTMFATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIP 344 >UniRef50_C8XH32 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XH32_NAKMY Length = 350 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 55/291 (18%), Positives = 109/291 (37%), Gaps = 10/291 (3%) Query: 36 STPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI 95 + P KA + + + + D +++++ G++ A + GV + + Q + Sbjct: 55 AAPTKAGKDYNVAFIQGVAGDEFYITMQCGIEAEAAKLGVTVNTQGGQKF-DPTLQTPIL 113 Query: 96 DQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVK-SRVGVPWFQMG 151 D +AIL+ + + P A + V+ + + P S+V G Sbjct: 114 DSVVASKPDAILIAPTDVTAMQRPLENAAAAGIKVVLVDTTTEDPSFAVSQVSSDNEGGG 173 Query: 152 YQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIE 210 + + + VL++ V+GF A+ S + + ND Sbjct: 174 AAAFKAIKDK-NPNGGKVLVISTDPGISTVDARVKGFEDAVGKDSTFDYLGVQYSHNDPA 232 Query: 211 IQRNLLQEMLERHPEIDVVAGTAI--AAEAAMGEGRNLK-TPLTVVSFYLSHQVYRGLKR 267 L+ L++ P+I + T I A ++ G + K +T+V F + LK Sbjct: 233 TAAQLVTAALQKDPDIVGIFATNIFSAEGSSTGVKQAGKSDQMTIVGFDAGPNQVKALKD 292 Query: 268 GRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 G V + Q G ++QAI L G +++ + ++T N D Sbjct: 293 GTVQALVAQQPATIGTDGLDQAIASLDGGTITPKIQTGFTIITADNVDSSD 343 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 15/269 (5%) Query: 62 LNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDL 118 +N M++A +Y VDL A + Q QID + I++ + P + Sbjct: 43 VNNEMRQAQYQYKNVDLLFTTA--ENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAI 100 Query: 119 QKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 ++ A +PVI + P + +G + G + R+L GK V+ + G + Sbjct: 101 ERAYRAHIPVILFDRKVKTPHYTASIGGDNVEAGREVARFLASKLDGKG-TVVEITGLKD 159 Query: 178 AGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG-TAIAA 236 A E GF + P V + +E + L+++ L++ D V G + + A Sbjct: 160 ASPVIERHRGFHEVMKNYPGIKVVTLESNWKLERAQELMKQYLDKGGHADGVFGHSDLGA 219 Query: 237 EAAM--GEGRNLKTPLTVVSFYLSH---QVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 A E R + + +V + +KRG+ + QGE +E A+ Sbjct: 220 IGAFLEAERRGIDKQMLIVGIDGLPGEWEGVDRVKRGQFAASYVYPT--QGEKIMELAMN 277 Query: 292 QLQGQSVSDNVSPPILVLTPKNADREHIR 320 LQG+ + + TP+N D ++ Sbjct: 278 ILQGKPYKKDNVMKSFLATPENCDAIALQ 306 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 59/329 (17%), Positives = 125/329 (37%), Gaps = 20/329 (6%) Query: 1 MRVLLFLLLSLFMLPAFSADNL--LRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSY 58 +RV LLS+ S N+ A T + + + L + + Sbjct: 14 LRVYAATLLSIVSGTLVSCTNISPNGPTAADTDTNTQTNNGSPHKLRSVGVTLGDLSNPF 73 Query: 59 WLSLNYGMQEAARRYGV-DLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF-- 115 ++ + G ++ A++ G D++V L Q QI+ + I++ ++ + Sbjct: 74 FVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTDLIIINAADSKGIR 133 Query: 116 -PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 Q + A VI + AI+A + + V Q G +Y+ GK NV+++ G Sbjct: 134 PAVDQARQAGKVVIAVDTAIEAD-IDATVTTNNVQAGEISCQYIADRLKGKG-NVVIVNG 191 Query: 175 PDNAGGSKEMVEGFRAAIAGSP-VRIVD-IALGDNDIEIQRNLLQEMLERHPEIDVVAGT 232 P + V+G +A P ++++ + + ++ ++L P+ID V Sbjct: 192 PP-VTSVIQRVDGCLKVLAKYPDIKLLSKDQNAEGSRDGGLRVMSDLLVTFPKIDAVF-- 248 Query: 233 AIAAEAAMG----EGRNLKTPLTVVSFYLSHQVYRGLKRGRVI--MAASDQMVWQGELAV 286 AI + +G + + +V + + + G + A+ + A+ Sbjct: 249 AINDPSGVGVDLAANQAKRQDFFIVGVDGAPEAIEAIASGDSLYAATATQNPRGMTQTAI 308 Query: 287 EQAIRQLQGQSVS-DNVSPPILVLTPKNA 314 + L G+ N+ P ++T +N Sbjct: 309 QVGNDILHGKKPESPNILIPAKLITKENV 337 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 111/281 (39%), Gaps = 13/281 (4%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 + + + ++ +N G Q+AA+ G DL + Q I+ Q G + Sbjct: 34 TYALVQINQQALFFNLMNKGAQDAAKASGKDLVIF--NSNDNPVAQNDAIENYIQQGVKG 91 Query: 106 ILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 IL+ + + + A++PVI + + A ++VGV + G G+Y V + Sbjct: 92 ILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGPQAAQVGVDNIEGGRIIGQYFVDYV 151 Query: 163 HGK--PLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEM 219 + L + G N+ + +GF + +P + I ++ G N + + + Sbjct: 152 QKEMGGQARLGIVGALNSAIQNQRQKGFEETLKSNPKITIANVVDGQNVQDKAMTAAENL 211 Query: 220 LERHPEIDVVAGTA----IAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAAS 275 + +P++ + T + A AA+ E + + + V + L+ + G+ G V Sbjct: 212 ITGNPDLTAIYATGEPALLGAIAAV-ENQGRQKDIKVFGWDLTAKAISGMDGGYVTAVLQ 270 Query: 276 DQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 G A+ G++V + P V+T N D Sbjct: 271 QDPEKMGAEALNALNSITSGKTVPKTILVPATVVTKANVDS 311 >UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria RepID=A6UE72_SINMW Length = 310 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 59/292 (20%), Positives = 120/292 (41%), Gaps = 17/292 (5%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQ 97 P A K+ P+L+ ++ + G+++ AR G+++ V++A + TQ +Q+ Sbjct: 19 PASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVVVDAK--NDTNTQVSQVQD 76 Query: 98 CKQWGAEAIL---LGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQP 154 +A + G++ + P + A +PVI + + + + + Y Sbjct: 77 LMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAPGDTFIAGESVESAYAV 136 Query: 155 GRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGD-NDIEIQ 212 +++++ A G + ++ G + G + AI V ++D + + Sbjct: 137 CKFIIEKAGGSG-KMAIIHGQKGTTPEVDRFTGCKRAIDENKGVELIDQQWSNMWSADEG 195 Query: 213 RNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR-----NLKTPLTVVSFYLSHQVYRGLKR 267 ++ Q ML+ +P+I ++ G A AMG + NL + + + L R Sbjct: 196 FSIAQNMLQANPDITIIFGQA--DGLAMGAAKAVDVANLSDKVIIGGYDGDVSALEYLAR 253 Query: 268 --GRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 G I A+ G LAVE A+ G+ V + +P ++ T NA Sbjct: 254 CKGPFIATATQSTQKMGVLAVESALAVAAGEKVEERQTPNAVLTTCDNAPEF 305 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 120/330 (36%), Gaps = 18/330 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ +L++ +L + + ST ++ + +L D + Sbjct: 1 MKKNKTILIAFSILMSLLLAACGSGGETSGDGNGESTGDSGQK--VIGVSISNL-DEFLT 57 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS-STTSFPDLQ 119 + M+E A Y D + + + + Q AQ++ +AI++ TTS D+ Sbjct: 58 YMQDAMKEEAANY-PDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIV 116 Query: 120 KQV--ASLPVIELVNAIDA-PQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 V A +P+I D Q + VG Q G + + + + N+ +M G Sbjct: 117 NMVNDAGIPIIIANRTFDGVDQATAFVGSESIQSGLLQMEEVAKLLNNEG-NIAIMDGEL 175 Query: 177 NAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 EG + I + +V D L++ L EID V Sbjct: 176 GHEAQIMRTEGNKQIIEEHDGLEVVLQGTAKFDRSEGMRLMENWLNSGTEIDAVVAN--N 233 Query: 236 AEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 E A+G L+ + V + +K G++ + QG +V+ A+ Sbjct: 234 DEMALGAILALEAVGKLDDVIVAGIDATPAALEAMKEGKLDVTVFQDAKGQGATSVKVAV 293 Query: 291 RQLQGQSVSDNVSPPILVLTPKNADREHIR 320 + G+ V D + P ++TP+N + + Sbjct: 294 QAANGEDVEDAM-IPYELVTPENVEEYEAK 322 >UniRef50_C3RC01 ABC-type sugar transport system n=5 Tax=Bacteroides RepID=C3RC01_9BACE Length = 282 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 108/268 (40%), Gaps = 16/268 (5%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYG-VDLKVLEAGGYSQLATQQAQIDQCKQ 100 KR +K+ + SL+ ++ + G + A +DL + +++ Q + Sbjct: 2 KRNYKIGLVMKSLQADFFKVMKEGAIQYAAPLPFLDLVCVGTATQTEVKEQIDLMYSLIH 61 Query: 101 WGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVK------SRVGVPWFQMG 151 +AI+L + P ++ +PVI + +DA ++ + VG F Sbjct: 62 QQVDAIVLVPIDSKALVQPAVEAVRKGIPVINIDIQLDAQLLEQAGVEVAFVGPDNFAAA 121 Query: 152 YQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEI 211 Y+ G+ L + + V ++ G A +++ GF AI +R+V D + E Sbjct: 122 YEVGKLLGKKLRNED-KVAIIEGLAAADNAQQRKRGFIKAIEEKGLRLVASEPADWETEK 180 Query: 212 QRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTP---LTVVSFYLSHQVYRGLKRG 268 + Q M R+P++ V + A+G + ++ L VV F + L G Sbjct: 181 AAEVFQAMWMRYPDLKAVYCS--NDAMALGVLQQMQEKKCYLPVVGFDNDAVMKEFLSTG 238 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQ 296 +++ A +E A+ L+G+ Sbjct: 239 KLVATADIFSSQMAVRGIEFALDVLEGR 266 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 114/289 (39%), Gaps = 14/289 (4%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 + K+ D++ L MQ ++ G ++ +A Q QI+ G Sbjct: 23 KDIKIGVSMAYFDDNFLTILRQSMQSKMKQDG-NVSGQFEDAKGDIAQQIQQIENFVSQG 81 Query: 103 AEAILLGSSTTSF--PDLQ-KQVASLPVIELVN--AIDAPQVKSRVGVPWFQMGYQPGRY 157 +AI+L T P ++ + A +P++ + + P + VG G Sbjct: 82 VDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPEVTLPAGMAYVGSDSKLAGKLQMEE 141 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLL 216 L + +GK NV+++ G + +++ G A P ++I+D + ++ Sbjct: 142 LAKLMNGKG-NVMILMGELSNEATRDRTRGVEEVAAKYPGIKILDKQTAKWGRKEAVDIT 200 Query: 217 QEMLERHPEIDVVAGTAIAAEAAMGE----GRNLKTPLTVVSFYLSHQVYRGLKRGRVIM 272 + +ID +A E A+G + K+ + V + +K+G + + Sbjct: 201 TDWALTGQQIDAIASN--NDEMAIGAILALKQAKKSGVLVAGVDGTPDALEYIKKGDLAL 258 Query: 273 AASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 + QGE AV+ AI+ ++G+ V NV P ++T N + Sbjct: 259 SVFQDAKGQGEGAVQTAIQLVKGEKVESNVLIPYQLITKANYQEFADKN 307 >UniRef50_A7VYE8 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYE8_9CLOT Length = 341 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 58/289 (20%), Positives = 110/289 (38%), Gaps = 16/289 (5%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY---GVDLKVLEAGGYSQLATQQAQI 95 K+ + L PS K +++ + G A R GV L++ E GY A + Sbjct: 56 AARKKPVTIGCLLPSDKITFFHDVIRGFFRAERELSDFGVSLRLKEVRGY-DPEIHLAAL 114 Query: 96 DQCKQWGAEAILLGSSTT---SFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGY 152 + A+ + + T + Q +PV + + +G + G Sbjct: 115 RELLAENVSALCVATIETPEITALLNQTAAEGVPVAAINIDLPHVNRLFYIGSNYLAGGR 174 Query: 153 QPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIE 210 G L A G P+++ ++ G N +EGF + +VD+ + +D E Sbjct: 175 TAGGLLSLMAKG-PVSLFVVAGSSNIHSHHLRIEGFAQVMKEKETAYTLVDVQVTQDDSE 233 Query: 211 IQRNLLQEMLERHPEIDVVA----GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLK 266 + + +L+ HPEI+ + G+A A+ E K +TV++F + + R +K Sbjct: 234 VAYEATKRVLQEHPEINYIYITTSGSAPGVCRALEELER-KKRVTVIAFDDNKENKRLMK 292 Query: 267 RGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD-NVSPPILVLTPKNA 314 G + + + QG A+ L +V ++ +N Sbjct: 293 EGSIDVLLCQESFRQGYDAINHLFYYLVDGTVPKAEYFTHTVIKIGENL 341 >UniRef50_Q1AUT8 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinobacteria (class) RepID=Q1AUT8_RUBXD Length = 351 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 104/286 (36%), Gaps = 9/286 (3%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK-QW 101 + Y + + + G+++A R GVD +++ Q +++ Q Sbjct: 66 DKLVIRVSYHNTSLGFANPIREGVEKAKRELGVDAELIGP-ANGSAQEQVSELQTLISQQ 124 Query: 102 GAEAILLGSSTTSF--PDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 + + + S++ P + + A +P+I + + VG Q G L Sbjct: 125 KVDGLAVSSASNDALKPVIAQAYNAGIPIISFNTNNPGSKQMAFVGQDLVQSGRFEAEQL 184 Query: 159 VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG-SPVRIVDIALGDNDIEIQRNLLQ 217 + + V++ AG S + GF A + G ++I N+ N +Q Sbjct: 185 RKELGDRKGKVVVFSVDTGAGWSNDRFSGFEAGMEGAEGIQIEGPINSGNEPRQAFNAVQ 244 Query: 218 EMLERHPEIDVVA---GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAA 274 + +P+ +A ++ A A + K + VV F + Q ++ G + Sbjct: 245 NTMTANPDAIAIASLDCCSVDAAAKWVQQNGKKGEIIVVGFDVLPQTADFIRNGVIQFTI 304 Query: 275 SDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 S V QG +V+ L+ +V+ ++ N D + Sbjct: 305 SQNPVEQGYQSVKILNDFLKKNKPLRDVNTGTKLVDKSNIDEVPLE 350 >UniRef50_A9GIG1 ABC-type sugar transport system, periplasmic component n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GIG1_SORC5 Length = 339 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 54/326 (16%), Positives = 113/326 (34%), Gaps = 18/326 (5%) Query: 6 FLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYG 65 + +++ F+L + + K + KL + + +W G Sbjct: 11 WAVVAPFVLALLAMTGCNEKSEGTGAAPAEGGGAKP-KIVKLAFVT-NNASEFWKIAQAG 68 Query: 66 MQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS--STTSFPDLQKQVA 123 +++ + V + V Q ++ G +AI + + P L K Sbjct: 69 VRKYEQESKVQVDVKMP-SNGTTEEQNQILENLSSQGYDAIAVSAIAPADQVPVLNKVAE 127 Query: 124 SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKE 183 +I + A +G + G G ++V+ + + G +A +K+ Sbjct: 128 KSKLITFDSDAPASSRLLYIGTNNHEAGKALGAHIVKLL-PDGGKMAVFVGTLSADNAKQ 186 Query: 184 MVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG----TAIAAEAA 239 ++G + AIAG + IVD + D R+ +++++ HP++ +VAG A AA Sbjct: 187 RLQGIQDAIAGKNIEIVDKREDNTDRAKARSNVEDIINAHPDLKLVAGLWSYNGPAIAAA 246 Query: 240 MGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR-------Q 292 + E K + F + ++ G + + G LA + A Sbjct: 247 I-EALGKKGKVLAAVFDEEEETLTAIENGTISATVVQKPFQFGYLASKWAHELSVKPDTA 305 Query: 293 LQGQSVSDNVSPPILVLTPKNADREH 318 + ++ I V+ N Sbjct: 306 KAQIPANKSIDTGIDVIEKTNVATFK 331 >UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82 Tax=Proteobacteria RepID=A3N967_BURP6 Length = 320 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 56/292 (19%), Positives = 121/292 (41%), Gaps = 21/292 (7%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAG--GYSQLATQQAQID 96 + K+ + SL + ++L++ G +E + ++ G + A+Q ++ Sbjct: 30 AETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRIVE 89 Query: 97 QCKQWGAEAILLGSST--TSFPDLQKQV-ASLPVIELVNAIDAPQVKS------RVGVPW 147 Q +AI+L + P ++K V A + V+ + N +D +KS VG Sbjct: 90 QMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGPDN 149 Query: 148 FQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDN 207 + G YL + V ++ G +++ GF+ A+ + ++V + G+ Sbjct: 150 RKGARMVGDYLAKRLKA-GDAVGIVEGVPTTTNAQQRTAGFQDAMKAAGAKVVSVQSGEW 208 Query: 208 DIEIQRNLLQEMLERHPEIDVVA----GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYR 263 +I+ + ML +P + + AI A +A+ + + VV + + + Sbjct: 209 EIDKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAA-GRQGKVYVVGYDNINAIKP 267 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQL----QGQSVSDNVSPPILVLTP 311 LK GRV+ A Q ++ A++ L + ++ V+ P+ ++T Sbjct: 268 MLKDGRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPVDLVTK 319 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 128/314 (40%), Gaps = 15/314 (4%) Query: 16 AFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY-- 73 A S+ L R TV A +L D+Y L MQE AR+ Sbjct: 4 ASSSRPLSRTRAVLFATVLCLAGSTALADLRLGVSVGQF-DNYIAYLVRAMQERARQVPG 62 Query: 74 GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP---DLQKQVASLPVIEL 130 GV L+V ++G S + Q Q++ +AI++ + T+ + A +P++ L Sbjct: 63 GVTLQVEDSG--SDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYL 120 Query: 131 VNAIDAPQVKS---RVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEG 187 + + + + VG ++G YL + GK ++ ++ G +++ G Sbjct: 121 NSRPEVREFPAGVVFVGTDERRLGQMQMEYLAEKMGGKG-DLAILLGRLAHDDTRKRTAG 179 Query: 188 FRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA--IAAEAAMGEGR 244 + +A P +R+V+ GD + +L L E D V + AAM + Sbjct: 180 VKDVLARYPQIRVVEEQSGDWQRDKGLDLTNNWLSSGREFDAVVANNDEMGIGAAMALRQ 239 Query: 245 NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSP 304 + ++V + + RG++ + V GE AV+ A+R ++ V +V Sbjct: 240 AGRREVSVGGIDGTPDGLAAIARGQLAVTLLRDPVAMGEEAVDVALRLVRKDVVQGDVWI 299 Query: 305 PILVLTPKNADREH 318 P+ ++TP N + Sbjct: 300 PVHLITPDNHTQFQ 313 >UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQH1_9FIRM Length = 356 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 107/294 (36%), Gaps = 24/294 (8%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 K + + +W+ + G++ GV + + A L Q ++ C Q G + Sbjct: 66 KYAVILKTQATDFWVKMWKGVEAETAVKGVKVDLYSAQSEDDLEGQLTILESCIQQGYDG 125 Query: 106 ILLGSSTTS--FPDLQKQVA-SLPVIELVNAIDAPQVK-------SRVGVPWFQMGYQPG 155 I + + P + + A + ++++ D ++ + V +G + Sbjct: 126 IAIAPLSGVNVLPGIGEATAKGITIVDVDEKFDETELANQGGACVAFVATDNVAVGAKGA 185 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNL 215 +Y+V A G+ V ++ G S++ +G + A + I+ D D + ++ Sbjct: 186 QYIVDTA-GEGAKVAIIEGKSGNQSSEDRTQGAKQAFTDGKMDIISSQAADWDRQKAMDI 244 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEGRNL-----KTPLTVVSFYLSHQVYRGLKRGRV 270 +++++P++ + A+G + + + +V + + + Sbjct: 245 ASTLIQQNPDLKGIYCC--NDGMALGAVQAVINANKLGEIMIVGTDGDAEAVSSIANNEL 302 Query: 271 IMAASDQMVWQGELAVEQAIRQLQ-GQS-----VSDNVSPPILVLTPKNADREH 318 + G +++ I ++ G+ + +++T +NA Sbjct: 303 SATVAQDPAQIGATSLDLLIEAVESGKKGEVGTFPEKTPVESVLVTAENAADFQ 356 >UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Thermotoga RepID=B1LAH5_THESQ Length = 343 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 56/316 (17%), Positives = 116/316 (36%), Gaps = 41/316 (12%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + SL + YW ++ GM++AA + G+ + +A + A Q +I Sbjct: 20 SEDMTILLAPKSLNNPYWFAVENGMKDAAEKLGIK-AIFDAPVEADAAKQAEKILSYIVK 78 Query: 102 GAEAILLGSSTTSFPDLQKQVA---SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 G + I + + + + A +PVI + + +G + GY+ G+ + Sbjct: 79 GVDGIGISPNDPEGIKVVVKRALDKGIPVIMFDSDSPDSGRYAYIGTNNYNAGYEAGKLM 138 Query: 159 VQ-----WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVR-------IVDIALGD 206 Q A K + + ++ G A E + GF+ A+ R + D D Sbjct: 139 AQLIEKYRAEKKTIRLAILTGGLAALNLNERIRGFKDALEDYSKRSGKEIVYVADPFPCD 198 Query: 207 NDIEIQRNLLQEMLERHPEIDV--------VAGTAIAAEAAMGEGRNLKTPLTVVSFYLS 258 +D +++++ ++ ++D + +A+G +K L VV F Sbjct: 199 DDSAKAIQIIRDVTRKYTDLDGWFMSGGWPLFAPKETVISALGGPERMKD-LLVVGFDTL 257 Query: 259 HQVYRGLKRGRVIMAASDQMVWQGEL-----------AVEQAIRQL-----QGQSVSDNV 302 +K G V + G L VE ++ L + +V + Sbjct: 258 LPELELVKAGAVKGLVGQRPYDMGYLSVLVLYNMAKIGVENTLKMLPKVVKEDGTVDYII 317 Query: 303 SPPILVLTPKNADREH 318 + ++T +N D+ + Sbjct: 318 DTGVDIVTEENVDQFY 333 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 54/302 (17%), Positives = 111/302 (36%), Gaps = 12/302 (3%) Query: 22 LLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLE 81 + +A A + + ++ S+ M+E A+ YG L V + Sbjct: 36 QTEKQTEKAGETEAKKEETKGEAKTIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQD 95 Query: 82 AGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQ 138 A G + Q Q+ +AI++ + ++ + A +PV + A D Sbjct: 96 AAGDAN--KQLGQVQDFITKKVDAIVIAPTNSAGSKSMIELAEKAGIPVFTMDIASDGKP 153 Query: 139 VKSRVGVPWFQMGYQPGRYLVQW-AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS-- 195 V V + G Y+V K NV ++ + + GF + + Sbjct: 154 VT-HVATDNKKGGQLAAEYVVNNILTEKKGNVAVITYSE-IESCVDRETGFTDYLKENAP 211 Query: 196 PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA-IAAEAAMGEGRNLKTPLTVVS 254 +++VD+ D + +++Q ML ++ IDVV AA A+ ++ Sbjct: 212 DIKVVDVQNYSGDQQKAADVMQNMLLKNDNIDVVFCVGDPAAIGALSSITAANAATKIIG 271 Query: 255 FYLSHQVYRGLKRGR-VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 + + + +K+G + + G+ +E + L+G+ V + ++ KN Sbjct: 272 YDGNPEGVAEIKKGGNWVADVAQDPAGIGKTTLEAIKKHLEGEKVDSEILIAPYIIDAKN 331 Query: 314 AD 315 A Sbjct: 332 AK 333 >UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9X5_9BURK Length = 318 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 113/302 (37%), Gaps = 12/302 (3%) Query: 26 HDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGY 85 A A + + + W +N G ++A ++ GV L A Sbjct: 8 GRLTIAMATAGLMSAAMAETTIAYITNGNTNEGWTLINGGAKKAGQKAGVKFIELAAEK- 66 Query: 86 SQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDLQKQ-VASLPVIELVNAIDAPQVKSR 142 +L+ Q A ++ AI + ++ P + K A + V+ + I ++ S Sbjct: 67 GELSKQLAIVEDMITRKVNAIAIAPVDSAGIAPAINKALAAGIKVVAVDTGISGAKITSY 126 Query: 143 VGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI--AGSPVRIV 200 V + G + + V+ + G +E +GF + V++V Sbjct: 127 VATDNIKAAMVQGDWTAEQIKD-GDTVIYVTGDQGQSTGQERKKGFLDGLNAKRKNVKVV 185 Query: 201 DIALGDNDIEIQRNLLQEMLERHPEIDVVA----GTAIAAEAAMGEGRNLKTPLTVVSFY 256 ++A D + +N ++ L +P V+A G A+ A+AA+ + + F Sbjct: 186 EVAT-TWDQTMAQNGVETALRANPTAKVIACAWDGGALGAKAALMAAGKKAGDVKIAGFD 244 Query: 257 LSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 S +K+G A+ + G++ VE AI +G+ V + ++ P N D+ Sbjct: 245 GSPGGLDMMKQGWQSANAAQMLAKIGQVGVETAIAAAEGKKVEARIDTGSFLVLPSNVDQ 304 Query: 317 EH 318 Sbjct: 305 FA 306 >UniRef50_C9NQR7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NQR7_9VIBR Length = 285 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 97/266 (36%), Gaps = 9/266 (3%) Query: 56 DSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS--TT 113 +W S+ G ++A + G+ + S ++ Q+ IDQ + ++L + Sbjct: 8 HDFWKSVKAGSEKAGQELGIKIYFRGPHDESDVSAQRFIIDQVMENACIGLVLAPNTRDR 67 Query: 114 SFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP 173 ++ + + A +P + +P V S + +Q G G+ + + K V L+ Sbjct: 68 AYDVARLKEAGVPTVYFDRDTGSPDVVSVIATNNYQAGVLAGKEMAKKLGNKG-RVALLR 126 Query: 174 GPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERH-PEIDVVA-- 230 + +GF S + + D I R + +L+ E+D + Sbjct: 127 MKKGVISTDAREKGFVDGATSSGLVVAVDGYLDTKIGEARKNAERILQSQIAELDGIFTP 186 Query: 231 --GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 T + A+ + + + F + + L+ G + Q G +V Sbjct: 187 NESTTLGVLMALDTVSAPEGLIHI-GFDSNDSLVNALEDGSIYGLIIQQPFEMGYKSVYT 245 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNA 314 + GQ S N++ + +T +N Sbjct: 246 VYQAFLGQEYSKNIATETIFVTKENM 271 >UniRef50_UPI0001B55A58 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B55A58 Length = 331 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 118/323 (36%), Gaps = 11/323 (3%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ +L + + A ++ + KL + + +++ Sbjct: 1 MKFSTTVLAAGTLASAVMLVTACGTGQIGQSGSGSAANSANSK--KLALVPGVQAEPFYI 58 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT---SFPD 117 S+ G QE A++ G +L V + Q + ++ A+L+ + P Sbjct: 59 SMQCGAQEEAKKLGYELTVQAPQKF-DATMQTSIVNSLGSNPPAALLVAPTDDQAMLAPI 117 Query: 118 LQKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 Q + ++E+ ++ D S V + G + + + KP +VL++ Sbjct: 118 QQVKNRGAKIVEVDTSLKDKSVAVSSVSSDNAEGGKLAAQTMAKLVGDKPGSVLILDTIA 177 Query: 177 NAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 + +GF + P ++ V I N+ E + + L P++ + T + Sbjct: 178 GTSTTAARAKGFEDELKNHPNLKSVGIQFTQNEPEQAASKVTAALVSTPDLVGIFATNLN 237 Query: 236 --AEAAMGEGRNLK-TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 AA G K + +V F S GLK+G + G V+QA+ Sbjct: 238 TGEGAATGLRNAGKIGKVNLVGFDASPSEVDGLKKGEYQALIAQDPAQIGTKGVDQAVAA 297 Query: 293 LQGQSVSDNVSPPILVLTPKNAD 315 L+G+ +++ + +T + D Sbjct: 298 LEGKPTERDLTAQLHSITKDDLD 320 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 60/292 (20%), Positives = 112/292 (38%), Gaps = 21/292 (7%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 A K+ D++ +L G++ AA+ VD+++ + G +++ TQ QI Sbjct: 19 AAADLKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQIED--GKNEVGTQLNQIQNFIA 76 Query: 101 WGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAI----DAPQVKSRVGVPWFQMGYQ 153 G +AI++ T + A +P+I + P ++ V G Sbjct: 77 SGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVNQLPDNQAFVASNEEVSGTL 136 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG---SPVRIVDIALGDNDIE 210 + + GK NV++M G + + + + I S +++V + Sbjct: 137 QTEEVCRLLGGKG-NVVVMMGELSNQAAIQRTKDIHDVIKRKECSGMKVVAEQTAEWSRL 195 Query: 211 IQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK------TPLTVVSFYLSHQVYRG 264 +L+ L E D V E A+G + LK + V + Sbjct: 196 KGNDLMTNWLSAGLEFDAVISN--NDEMAIGAIQALKASGRKMDSVVVAGIDATPDALAA 253 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 +K G + + QG AV+ A+R +G++V V P ++TP N D+ Sbjct: 254 MKSGDLDVTVFQSAKGQGAGAVDAAVRLAKGENVDQKVWVPFELVTPANLDK 305 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 60/318 (18%), Positives = 112/318 (35%), Gaps = 16/318 (5%) Query: 14 LPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY 73 L + S + + W + Q P + + + +L + YW SL G A + Sbjct: 29 LNSDSEPDRMDWSELDAKFGQMPVPAAGTK---VGGVSKTLTNEYWRSLGEGYANVATKL 85 Query: 74 GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDLQKQ-VASLPVIEL 130 G++ A Q A + G A+L T + P ++ A +PV+ + Sbjct: 86 GIEFVYQAAQSEGDQLGQLAIAENLISQGFNALLFSPQTDANLIPAVEAATAAGVPVLNV 145 Query: 131 VNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRA 190 +A+ P + VG G + + V ++ G + + GF Sbjct: 146 NDAV-IPSAANYVGNVQKGNGVNVANWFI-ANRPDGGKVAVIEGQPGVYAAGQRTAGFTE 203 Query: 191 AI-AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-- 247 I AG +V + E N +L+++P++ A+G +K Sbjct: 204 TITAGGKFEVVASVPANWSREEAFNAASTILQQYPDLIGFYAN--NDGMALGVVEAVKAA 261 Query: 248 ---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSP 304 + V Y ++ G + V GE+A+E A+R + GQ + V+ Sbjct: 262 GKAEQVAVFGTDGISDAYAAVRAGDLTGTVDSFPVLTGEIAMEVALRLMAGQDLPRVVAT 321 Query: 305 PILVLTPKNADREHIRRS 322 P ++T N + Sbjct: 322 PQALITKDNVETYATSDM 339 >UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN50_9CLOT Length = 333 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 55/300 (18%), Positives = 124/300 (41%), Gaps = 27/300 (9%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 ++++FL L++ L FS + +V+ + + +L + + +S Sbjct: 8 KIVIFLSLAIVFLILFSLIIIENIRMKNSDSVE----------YVIGMSQANLYEPWRIS 57 Query: 62 LNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL--LGSSTTSFPDL 118 +N + A++Y + + +AGG + Q+ ID+ G + ++ + S P + Sbjct: 58 MNEEISNEAKKYKNIKIVYKDAGGDTN--KQKKDIDELLNSGIDLLIVSINDSEKLTPVV 115 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 K S+PV+ L A++ +G ++G + G+ +V V+ + G N+ Sbjct: 116 SKAYKSVPVVVLDRAVEGYNYSVYIGPDNEKIGREAGKMVVDLLGNSEGRVIEIQGLLNS 175 Query: 179 GGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 + +GFR AI ++IV +G+ + + ++E+L+ ID++ A Sbjct: 176 HPDIDRSKGFREAIKQCDNIKIVRTVIGEWQKDEAEDKIEELLKEDRNIDIIF--AHNDY 233 Query: 238 AAMGEGRNLKT----PLTVVSFY---LSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 A+G + + ++ + + RG + + G+ AV+ A+ Sbjct: 234 MALGAYKAAYKLGINNIKIIGVDGLTGENGGLDLVSRGILQGTFTCSTG--GKEAVDSAL 291 >UniRef50_A4XG54 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Clostridia RepID=A4XG54_CALS8 Length = 345 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 60/343 (17%), Positives = 108/343 (31%), Gaps = 29/343 (8%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTP---LKAKRAWKLCALYPSLKDS 57 M+ + LS+F+ A QAS+ LK + + + Sbjct: 1 MKKNFYKYLSIFLAIALIVSLAYALVPNSKDVTQASSGNPKLKGSPKEEYYMVTFASGIE 60 Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL---GSSTTS 114 YW GM+ AA YGV A + Q + Q IL+ Sbjct: 61 YWKGCFKGMKAAADLYGVKAIYTGA-PQFDVNQQVTVLRQVIAKKPAGILVTCANPDALK 119 Query: 115 FPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 P + +PVI S + + G RYL + GK + + Sbjct: 120 APIDEAIKKGIPVITFDADSPKSLRYSVLETGNYNAGAMAARYLGKLLGGKGE--VGIST 177 Query: 175 PDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT 232 ++ +GF + +++V I +ND + ML+ HP I + T Sbjct: 178 VAAQLNHEQRKQGFIDTLKKEFPGIKVVSIVNDENDSTKAARGVAAMLQAHPNIKGIFCT 237 Query: 233 ----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 + A+ E + + +VSF +K+G + + + G + Sbjct: 238 DAPGGVGVATAIKEANKV-GKIKIVSFDTDKGTLDLIKQGVIDASIAQGTWNMGFWGMTF 296 Query: 289 A-------------IRQLQGQSVSDNVSPPILVLTPKNADREH 318 ++ + V +V+T +N D + Sbjct: 297 LFYLKHGIVNPVDNWKKFGINPLPPYVDTGTMVVTKQNVDAFY 339 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 56/293 (19%), Positives = 105/293 (35%), Gaps = 11/293 (3%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 K ++ + +L + YW SL G + GV L A Q + + Sbjct: 51 KPTEGTQIGGVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMI 110 Query: 100 QWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDA--PQVKSRVGVPWFQMGYQPGRY 157 G + +L+ T + + A+ I +VN DA P VG G + ++ Sbjct: 111 LQGYQGLLVSPQTDNNLQPAMETAASRGIAVVNVNDAVIPSATQYVGNVQRDNGVRVAQW 170 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPV-RIVDIALGDNDIEIQRNLL 216 + G V + G + + +GF I + ++V + E + Sbjct: 171 FIDNRPG-GGKVAAIEGQPGVFAAGQRTDGFTTTITEAGNFQVVASVPANWSREQAYDAA 229 Query: 217 QEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVI 271 +L++HP++ A+G +K ++V Y ++ G + Sbjct: 230 STILQQHPDLIGFYAN--NDGMALGVVEAVKAANLQEQVSVFGTDGIPDAYASIRAGDLT 287 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 V GE+A+E +R L GQ + V+ P ++T N + S + Sbjct: 288 GTVDSFPVLTGEVAMEVVLRLLAGQGIPRVVATPQALITADNVADYSVEDSTA 340 >UniRef50_A8F3L8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F3L8_THELT Length = 321 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 104/298 (34%), Gaps = 19/298 (6%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYG--VDLKVLEAGGYSQLATQQAQIDQCKQW 101 A+++ + + +W G + A V + V + + Q A ++ + Sbjct: 21 AYEIAFVVKATDSDFWQYTIVGAKNAEHDLQGLVKVTVYGPPSEADIDKQVAILEDVIRT 80 Query: 102 GAEAILLGS--STTSFPDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 +AI++ S S + P L K + +I + N + S + G + Sbjct: 81 KPDAIVISSTSSHATAPALNKAYQQGIKIILIDNFVYDTGYHSFLATNNKVGGGLAAEKV 140 Query: 159 VQWAHGKP----LNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQ 212 V+ V L+ + +GF A + + I+ DNDI Sbjct: 141 VELLKKSGRPLKGKVGLISSMAGVQVLIDRDDGFTARLKELAPDLEILPTRYVDNDIAKA 200 Query: 213 RNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR-----NLKTPLTVVSFYLSHQVYRGLKR 267 ++++ + + +VA A G R NL+ + V++ Q L+ Sbjct: 201 AAAAEDLITAYGD-QLVAIFADNNHTGDGVARVIEEQNLQDKVIAVAYDSDPQEVEALRN 259 Query: 268 GRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 G + G V A + G+++ + V+T +N D +++ L P Sbjct: 260 GSLKALIVQDPHGMGYKGVMFAFMAINGETLPSYFDTGVYVVTKENMD--NLQWVLDP 315 >UniRef50_B9K0T2 ABC transporter substrate binding protein (Ribose) n=2 Tax=Agrobacterium RepID=B9K0T2_AGRVS Length = 329 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 111/300 (37%), Gaps = 19/300 (6%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + +++ + D+++++++ G + AA G + A TQ +D Sbjct: 30 NKKFRIALIPGLTTDAFYITMHKGAEAAAAAIGAQIIFQGA-PDFNPVTQVPVLDAVIAK 88 Query: 102 GAEAILLGSSTTSF---PDLQKQVASLPVIELVNAI----------DAPQVKSRVGVPWF 148 +AIL+ + T+ P + A +P+I + I D S + Sbjct: 89 KPDAILIAPTDTTQLVQPLKKAADAGIPMITVDTFIGTGDYQTGAGDGDFPLSYIASDNV 148 Query: 149 QMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDN 207 G R L K V + + + +GF++ +A P + +++ DN Sbjct: 149 LGGEIAARSLALAIGDKG-KVYVSNVKPGVSTTDQREQGFKSEMAKHPGITVLETQFNDN 207 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGTAI--AAEAAMGEGRNLK-TPLTVVSFYLSHQVYRG 264 D + LQ + R+P++ V G + +A G + + + VV+F V Sbjct: 208 DANKAASQLQAVYARNPDLAGVFGANLFSGLGSANGVQQAGQSGTIKVVAFDAPGSVVDN 267 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 LK G + A + G V A L GQS+ + V+ N + R + Sbjct: 268 LKSGLIDFAIAQHPAEIGYYGVISAYAHLTGQSIPTKIGTGFTVINKSNVTDPAVARFIY 327 >UniRef50_B0MFL8 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MFL8_9FIRM Length = 312 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 104/265 (39%), Gaps = 9/265 (3%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + + + S YW+S+ GM++AA GV + ++ + TQQ I + Sbjct: 39 NPKYVIGVVTKSRSSEYWMSVCSGMEKAASDLGVKVIIMSPDTETDEKTQQQMIGSLLKK 98 Query: 102 GAEAILLGSSTTSFPD---LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 +A+ + + + + + V+ I V +G+ ++G + +Y+ Sbjct: 99 DIDALAVSPINSHNAKGYLKKAEEKGIQVVSYDTKILEKGVP-YIGIDNEKVGRELAQYM 157 Query: 159 VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQ 217 K L V ++ G ++GFR I + ++I G +++ + + Sbjct: 158 AAQMKKKGL-VGIISGNLKQSSHASRLKGFRDYIDKNTDIKIAFTESGYSNLRMPEKEIS 216 Query: 218 EMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-PLTVVSFYLSHQVYRGLKRGRVIMAASD 276 ++ HP+++ + T+ A A+G L P+ + + +K+G++ A Sbjct: 217 RLMREHPDLNGIFATS--AVTALGIMEYLGDRPVLIATVDAQEDALDAVKKGKIGALAYQ 274 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDN 301 G V + Q +G+ + Sbjct: 275 PGYEIGYETVRYIVNQKEGKKQPEQ 299 >UniRef50_C6D7S4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D7S4_PAESJ Length = 327 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 53/295 (17%), Positives = 116/295 (39%), Gaps = 13/295 (4%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 + + + S + YW ++ G Q A + +G+ + + + Q Q Sbjct: 34 QKPSDITIQVILRSSEGDYWQNVMLGAQAAVKEFGITMYTTASYDETDADGQMQAARQAL 93 Query: 100 QWGAEAILLGSSTTSF--PDLQKQVAS-LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 +AI+L +S P L++ +PVI + + + + + +S +G+ ++ G Q R Sbjct: 94 ATKPDAIVLAASDDEIFAPFLKEAAERQIPVIAIDSVLTSGKTRSYIGMDNYEAGGQALR 153 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 L + + ++ + +G A + P +RIVD + +I Sbjct: 154 ELADQLGRQG-QIAIIAHAAGGINGRLRAQGILDAASRYPNIRIVDQVTCSGEQDICSQT 212 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTP-----LTVVSFYLSHQVYRGLKRGRV 270 + E L + ++D + A+ EA++G L+ + ++ F S ++ L+ ++ Sbjct: 213 VAEELHKR-QLDGII--ALNTEASIGAAMELRNEQAGNLVKLIGFDSSPELLELLQENQL 269 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 G L ++ A+ G V V ++ KN + ++ L P Sbjct: 270 QKLIVQNPFSMGYLGMKYAMEAALGHKVPSRVEIQNKLIDKKNMFWKDNQKLLFP 324 >UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y299_LEPCP Length = 318 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 107/295 (36%), Gaps = 15/295 (5%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYG-VDLKVLEAGGYSQLATQQAQIDQCK 99 A + + S +W + G++ A + G +DL +Q + Sbjct: 23 ADNKLNIVFIPKSSDQMFWDLMRNGVERAMQEEGQIDLTWRGPAYNDDTDSQIRILQYYT 82 Query: 100 QWGAEAILLGSSTTS---FPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 + G +AI++ + S P Q + V+ + +A+D V G R Sbjct: 83 RAGVDAIVITPTDRSRLVGPVEQAVRMGIKVVVVDSALDGSGHLQFVTTDNHASGQLAAR 142 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP--VRIVDIALGDNDIEIQRN 214 L + G+ V+L+ + + + GF ++ + + IV G R+ Sbjct: 143 QLAELM-GQRGRVVLLRTVAGSASTDDRARGFIDYLSANAPAISIVADVYGGGSAGKARH 201 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGR 269 +L + + D + A+ A G R L+ + F + + GL++ Sbjct: 202 SASALLAKSADFDAIF--AVNESATDGMLRALREAGLAGRKRFIGFDSTPFLLEGLEKKE 259 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDN-VSPPILVLTPKNADREHIRRSL 323 + G LA++ + L+ + + ++ + ++T N R I++ + Sbjct: 260 IDGLIVQDPDRMGYLAIKAVVAALRNRPIKESVIHTGTTLVTRANFRRPEIKKLM 314 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 107/284 (37%), Gaps = 15/284 (5%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 + + + S +D + ++N ++ Y + ++L Q A I+ Sbjct: 33 ERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQANTELLIRSVKDDTPKQIADIEWFI 91 Query: 100 QWGAEAILLGSSTTSF--PDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 + + +++ + + P ++K +PVI + I + VG +Q+G + G Sbjct: 92 EQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATESYTAYVGANNYQIGKEAGH 151 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 Y + GK N+ + G + E +GF A+ +P VRIV G+ + Sbjct: 152 YAIGILKGKG-NIAEVRGTKGSTSDAERHKGFVDALNNAPEVRIVAETWGNFLKADAKVQ 210 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMG---EGRNLKTPLT-VVSFY-LSHQVYRGLKRGRV 270 +Q++ ++HP ID+V A+ A G + ++ L + ++ Sbjct: 211 MQQLFQQHPNIDLVF--AMNDPMAAGTHEAAMQFNGKIPFIIGVDALQQEGISNIENNVQ 268 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 + GE ++ A++ L Q V+ N Sbjct: 269 DASFIYPTG--GEKVIDLAMKILHKQPFERENILNTAVVDKSNV 310 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 109/286 (38%), Gaps = 19/286 (6%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 + + + S +D + ++N ++ Y D +VL Q A I+ Sbjct: 24 ERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQADAEVLIRSVKDDTPKQIADIEWFI 82 Query: 100 QWGAEAILLGSSTTSF--PDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 + + +++ + + P ++K +PVI + I + VG +Q+G + G Sbjct: 83 EQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATESYTAYVGANNYQIGKEAGL 142 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 Y + GK N+ + G + E +GF A+ +P V+IV G+ + Sbjct: 143 YAIGVLKGKG-NIAEVRGTKGSTSDAERHKGFVDALKNAPEVQIVAETWGNFLQADAKTQ 201 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMG---EGRNLKTPLT-VVSFYLSHQVYRGLKRGRVI 271 +Q++ + HP ID+V A+ A G + ++ QV G++ + Sbjct: 202 MQQIFQEHPHIDLVF--AMNDPMAAGTHEAAMQFNGKIPFIIGVDALQQV--GIQN--IE 255 Query: 272 MAASDQMVW---QGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 + D GE +E A++ L Q V+ N Sbjct: 256 NSVQDASFIYPTGGEKVIELAMKILHKQPFQRENILNTTVVDKSNV 301 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 108/296 (36%), Gaps = 17/296 (5%) Query: 35 ASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQ 94 A+ + A+ + P+L +++ + ++ A+ GV+L E+ G + Q A Sbjct: 39 AAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVNL--TESDGQNSATKQTAD 96 Query: 95 IDQCKQWGAEAILLGSST--TSFPDLQKQV-ASLPVIELVNAIDAPQ-VKSRVGVPWFQM 150 I+ AI++ P +++ V A +PV+ + +D Q + + VG + Sbjct: 97 IEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRVDGVQGILAHVGADNVKG 156 Query: 151 GYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIA--GSPVRIVDIALGDND 208 G +V A + + G AG + + +G + +I+ + Sbjct: 157 GEAEASAMV-AAFPNGAKLFHLQGQPGAGPAIDRNKGVHNVLDPLKDKYQIIFEQTANFA 215 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGE----GRNLKTPLTVVSFYLSHQVYRG 264 ++ + L + + D + + A+G T + + F + Sbjct: 216 RAEALSVTEAGLAANGKPDAIICA--NDDMALGALEACAARNFTDVKIYGFDALPEALVA 273 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDN--VSPPILVLTPKNADREH 318 ++ G++ Q AV+ A+ + ++ V +V+ N D+ Sbjct: 274 VRDGKLAGTVEQFPGQQSRTAVQIAVAYAKNKTEPKEKLVLLTPIVIGKDNLDKAE 329 >UniRef50_A8RPD9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPD9_9CLOT Length = 369 Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 120/294 (40%), Gaps = 20/294 (6%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVL---EAGGYSQLATQQAQIDQ 97 R K+ + ++ +Y +++N G ++ G+D+++L A S + Q ++ Sbjct: 75 KDRTLKVGLIPVTMNTAYTMTIN-GAKKQIEDKGLDIELLVQAPASNTSTITEQGNIMES 133 Query: 98 CKQWGAEAILLG--SSTTSFPDLQKQV-ASLPVIEL-VNAIDAPQV--KSRVGVPWFQMG 151 Q G +AI L S + P L+ A +PV + +D + S +G + G Sbjct: 134 MIQQGVDAIALATESDNSMLPYLRAAAEADIPVFLFNMTELDKDNIYYVSSIGYDQYNAG 193 Query: 152 YQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIE 210 + G+Y+ + K + + ++ G + ++GF+A I G ++IV D E Sbjct: 194 LEIGKYVAEHYGDKEVKLAILEGYAGIVNTM-RIDGFKAGIQGKDNIQIVASQTADWTRE 252 Query: 211 IQRNLLQEMLERHPEIDVVAGTAIAAEAAMG-----EGRNLKTPLTVVSFYLSHQVYRGL 265 +++ + +L +P+I+++ G E +G + R L + + + + + Sbjct: 253 KGQSVTESILTSNPDINLIFGDY--DEMVLGGLVSIKERGLLDQIDTIGYGCTKDGVAAI 310 Query: 266 KRGRVIMAASDQMVWQGELAVEQAIRQ-LQGQSVSDNVSPPILVLTPKNADREH 318 + + G ++ ++G+SV ++ P V N Sbjct: 311 ENNEMTATIDVGEYGTGIDIIDAVNDFCIEGKSVEKVINRPSKVYDKNNIGELD 364 >UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI72_RHISN Length = 367 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 118/337 (35%), Gaps = 27/337 (8%) Query: 5 LFLLLSLFMLPAFSADNLLRW--------HDAQHFTVQASTPLKAKRAWKLCALYPSLKD 56 + S+ PAF+A+ D + + K R KL L P+ D Sbjct: 23 VAFAASVGFQPAFAAEPDYNAVFPGILMDKDIKPTGQEMKPVKKDNRPLKLGFL-PTAMD 81 Query: 57 SYWLSLNYGMQEAARRYG----VDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG--S 110 +Y+ + G++E + G ++L V S Q ++ G +AI + + Sbjct: 82 TYYQRVLAGVKEEIDKRGGAEAIELLVQAPSSQSATDDQIRAMEAWINDGIDAIAVALYN 141 Query: 111 STTSFPDLQKQV-ASLPVIELVNA-IDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLN 168 P +++ A +PV + D P S VG G +++V K + Sbjct: 142 EGALLPSIRRATEAGIPVFLFNSPFADNPYYVSDVGYDQSDGGRAQAQWIVDTYGDKEVK 201 Query: 169 VLLMPGPDNAGGSKEMVEGFRAAIAGSPV-RIVDIALGDNDIEIQRNLLQEMLERHPEID 227 + ++ G S + ++GF I+ P +IV ++ + M +P+I+ Sbjct: 202 IGILEGLPGPHTS-QRMKGFNEIISKHPNFKIVAQQPAGWVRAQGLSVTENMFTANPDIE 260 Query: 228 VVAGTAIAAEAAMG-----EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQG 282 V+ A+ E A+G + + L + +V + + + G +G Sbjct: 261 VLV--ALYDEMALGGLQALKAKGLNGKVAIVGYENMKEANAAILTGDFSATVDTGAKEEG 318 Query: 283 ELAVEQAIRQL-QGQSVSDNVSPPILVLTPKNADREH 318 V L +G + + V N Sbjct: 319 RNIVRAVDEFLMKGNPLPKKIFVSPKVYDATNIKTFD 355 >UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Synergistaceae RepID=C1TNC1_9BACT Length = 338 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 106/290 (36%), Gaps = 18/290 (6%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGA 103 ++ L +L + YW+++ E A+ G+ ++V+ A L +Q ++ Sbjct: 49 QERIGVLVITLSNPYWVTMKERYGEWAKEMGISVEVMAAPTEKDLKSQLNTLEAMVAKKY 108 Query: 104 EAILLGSSTT--SFPDLQKQVA-SLPVIELVNAIDAPQVK-------SRVGVPWFQMGYQ 153 + I++ P + K +PV+ + +K + + G Sbjct: 109 DGIIVTPMDPFNLIPGIVKADEKGIPVVCSGPEVSRDGLKQAGAVMDGWITATFKDQGRL 168 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQR 213 + + V ++ G AG SK EG + +++V + G+ D Sbjct: 169 CAEDMAEKL-PSGSEVAIIEGIPGAGQSKARREGASEGFEKAGLKLVAVEAGNWDRNRAY 227 Query: 214 NLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK----TPLTVVSFYLSHQVYRGLKRGR 269 ++ +++ HP++ + A+ L+ +TV + +K GR Sbjct: 228 DITTNLVKAHPQLKGIYCA--NDVMALAAVDALEVAGIEGVTVYGTDFIPEAAEAIKSGR 285 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQG-QSVSDNVSPPILVLTPKNADREH 318 + + + + ++ ++ + + + +S PI ++ +N + Sbjct: 286 LAGSTTFSQAAWTRGTLVYTLKLIKKDEDLPEKLSVPITLVNGENIGQFQ 335 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 106/281 (37%), Gaps = 15/281 (5%) Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLK-VLEAGGYSQLATQQAQIDQCKQWGAEA 105 + + + + +L+ +Q+ A G G + +ATQ +QI+Q G + Sbjct: 1 MALFMSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDG 60 Query: 106 ILLGSSTTSF---PDLQKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQW 161 I++ +T + + V+ L I D + VG G + +++ Sbjct: 61 IIIEPVSTDGIVKAVKDAEKVGVKVVILNQRISDQNAADTFVGADNESTGAALMKKVMED 120 Query: 162 AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEML 220 GK N++ + GP + G +GF + +A P V+++ D D L + L Sbjct: 121 LDGKG-NIVELLGPMGSDGQVGRSKGFDSVLAEYPDVKVIASDSADWDTAKALTLTENWL 179 Query: 221 ERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAAS 275 D+ A A A+G + +K + V + + G + S Sbjct: 180 TS---SDIQAVVAQNDGMAVGAAQAIKEAGLTDKIKVYGVDATSDGLNAIVNGGMTGTVS 236 Query: 276 DQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 QG+++ + + GQSV V +V T +N + Sbjct: 237 QGTENQGKISADLCSNLIYGQSVPKEVIATNVVYTKENVNE 277 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 96/283 (33%), Gaps = 17/283 (6%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 + + + A S D W + D+++ A S Q + Sbjct: 23 KNYVIGAPMNSFADK-WQTYLQDAVRDFDEKHDDVQIKLADSNSDPNIQVNLVQNFIDQN 81 Query: 103 AEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQ---VKSRVGVPWFQMGYQPGR 156 +A+L+ + + + + A +P+I + + V S VG + G G Sbjct: 82 VDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDEHMQYVTSFVGSDEIEGGRIQGN 141 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 ++V GK L++ GP + +G A +++V G + + + Sbjct: 142 FIVNTLAGKNAESLILLGPLGQDAVTKRTQGNEEIFAQHKNIKVVSKQEGRWERDRGLAI 201 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT------PLTVVSFYLSHQVYRGLKRGR 269 + +L + I+V+ E A+G + +T+V + L +G Sbjct: 202 AENVLAGNKGINVIVSN--NDEMAIGAILATRKLGIKDEDITIVGLDATPDALEYLGKG- 258 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPK 312 + QG E A +G+ V P ++TP Sbjct: 259 LDATVFQSAQGQGYTGAEMAYLAAKGEKVPSVKWVPFELVTPD 301 >UniRef50_A7NNR8 Anti-sigma-factor antagonist n=2 Tax=Roseiflexus RepID=A7NNR8_ROSCS Length = 445 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 117/294 (39%), Gaps = 22/294 (7%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGA 103 A L + + ++W L +G++ A +GV + +A + Q + + Sbjct: 4 AITLGCVLNDARFTFWSILRHGVRARAADHGVTVIDQDART---VEAQVEMVADLLRRRV 60 Query: 104 EAILLGSSTTSFPDLQ----KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 A++LG + + Q ++A +PVIE+ I V + V Q + L Sbjct: 61 HALILGPARETRAFAQHLELARLARVPVIEVDGGILEGYVSATVRSDERQGLMRIAELLT 120 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQE 218 + + L+ GP N + A+ P +RI+ A+GD E RNL +E Sbjct: 121 ARLGEQLC-IALIAGPHNH-----RADILADALRQWPRIRIMAQAVGDWTRESGRNLTEE 174 Query: 219 MLERHPEIDVVAGTAIAAEAAMGE-----GRNLKTPLTVVSFYLSHQVYRGLKRGRVIMA 273 L ID + A A+G +NL + VV F + R + G ++ Sbjct: 175 WLRAGQPIDAIF--AANDPMALGAVDALKAQNLAGKVVVVGFDGLPEALRAIHSGHMLAT 232 Query: 274 ASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRS-LSPG 326 + + + G AV+ A++ L+G V + P ++T N + L PG Sbjct: 233 VNQEPLRIGRQAVDVALQALRGVPVERQIFTPGELITCDNVTESALSALDLLPG 286 >UniRef50_C6PMK8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PMK8_9CLOT Length = 329 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 99/289 (34%), Gaps = 9/289 (3%) Query: 37 TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 T + K K+ + + YW + G ++AA++ + S I+ Sbjct: 32 TIIDEKIKPKITLISHVYSNPYWKYIKLGAEKAAKQRNAVIDFQGPDTASAGEG-IKFIN 90 Query: 97 QCKQWGAEAIL--LGSSTTSFPDLQKQVAS-LPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 I+ + P + K +A +P++ + + + + + VG G Sbjct: 91 MAYAAKVSGIITYVQDEAMYKPVIDKVLAGGIPIVTVDSDAENSKRLAYVGTDNVTAGRV 150 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIA-GSPVRIVDIALGDNDIEIQ 212 + ++ G NV ++ G N E V GF I S + I +I D+ + Sbjct: 151 GAKEMIHHV-GIYGNVGIIMGGKNVKNQIERVNGFTEYIKSNSKLNISEIESSDSYLLEA 209 Query: 213 RNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR---NLKTPLTVVSFYLSHQVYRGLKRGR 269 +++L + +I V T+ + + ++ F + +K G Sbjct: 210 ELATKKILINNKDIKAVFCTSALDGQGAAKALISMGAAEKVKIICFDDLPETLDYIKNGT 269 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 + G AV + ++G+ ++V++ N D Sbjct: 270 ITSTIVQDPYGMGYKAVNIIMDIMEGKDTKGVFLTDVIVVSKDNIDEFK 318 >UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YAA5_DICT6 Length = 331 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 111/315 (35%), Gaps = 24/315 (7%) Query: 35 ASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYG----VDLKVL-EAGGYSQLA 89 +T + + + +L + + G + A ++VL A S Sbjct: 17 MATTAQTPKKLVFAWIPKALNNPVFELGRDGAFKRAEELSKKGPYKVEVLYVASVASDAT 76 Query: 90 TQQAQIDQCKQWGAEAILL--GSSTTSFPDLQKQV-ASLPVIELVNAIDAPQVKSRVGVP 146 Q ++ + I + T + K V A +PV+ + + +GV Sbjct: 77 EQARVVEDVVARKVDGIAISCNDPTALIDVINKAVEAGIPVMTFDADSPKSKRFTYLGVN 136 Query: 147 WFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALG 205 ++ G + LV+ +V L+ G A +E + GF+ I P ++IV Sbjct: 137 NYEGGKWAAKLLVRAMGTSG-DVALLTGVPGALNLEERMRGFKDEIKKYPKIKIVTTVAC 195 Query: 206 DNDIEIQRNLLQEMLERHPEIDV--VAG----TAIAAEAAMGEGRNLKTPLTVVSFYLSH 259 +DI +++E ++++P++ G A + E + V+F Sbjct: 196 YDDINRGVQVVEETMQKYPKLRGWFFVGLWPLLAERGSMPLWEKAAKAKKVFTVAFDTLP 255 Query: 260 QVYRGLKRGRVIMAASDQMVWQGELAVEQAIR-QLQGQSVSDNVSPPILVLTPKNADR-- 316 + LK G + + G A++ R + + D + + ++T KN D Sbjct: 256 VELQLLKEGYLCGLVGQKYWGWGYDAIDILYRKVVNNEKFPDWIDSGMDIVTQKNVDAMI 315 Query: 317 -----EHIRRSLSPG 326 + + L P Sbjct: 316 RAWLLKDFKTPLPPA 330 >UniRef50_A1TUU8 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TUU8_ACIAC Length = 318 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 112/294 (38%), Gaps = 19/294 (6%) Query: 36 STPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAG--GYSQLATQQA 93 + P A+ K+ + SL + ++ ++ G + + + + ++ G + A Q Sbjct: 22 AQPAFAQDKPKVALVMKSLANEFFRTMEDGAKAHQKAHASEYTLVANGIKNETDTAAQIK 81 Query: 94 QIDQCKQWGAEAILLGSST--TSFPDLQKQV-ASLPVIELVNAIDAPQVKS------RVG 144 I+Q AI+L + P ++ V + V+ + N +DA +K VG Sbjct: 82 MIEQAVAQKVNAIVLAPADSKALVPAVKAAVDKGILVVNIDNRLDANALKEKSLNVPFVG 141 Query: 145 VPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIAL 204 G YL + V ++ G +++ GF+ A+ + + +V + Sbjct: 142 PDNRAGAKLVGDYLAKQLKA-GDKVGIIEGVSTTFNAQQRTLGFQDAMKAANINVVGVQS 200 Query: 205 GDNDIEIQRNLLQEMLERHPEIDVVAG---TAIAAEAAMGEGRNLKTPLTVVSFYLSHQV 261 G +IE + ML HP++ + + A + VV + + + Sbjct: 201 GQWEIEKGNTVAAGMLREHPDLVALLAGNDSMALGAVAAVRAAGKAGKVQVVGYDNINAI 260 Query: 262 YRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQS----VSDNVSPPILVLTP 311 L GRV+ A Q +E A++ L ++ + V ++++T Sbjct: 261 KPMLADGRVLATADQYAAKQAVFGIEMALKALAAKTPQAQLPAEVKTEVVLVTK 314 >UniRef50_A5FY95 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FY95_ACICJ Length = 329 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 11/261 (4%) Query: 46 KLCALYPSL-KDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAE 104 K AL P + D +++++ +G A++ G+ L +S TQ + Sbjct: 36 KTIALVPGIATDPFYITMQHGAAAEAKKLGLHLIWQGGSSFS-PETQIPALQALLAKHPA 94 Query: 105 AILLGSSTTSF---PDLQKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQ 160 A+L+ + P Q A +PVI + I D +KSR+ Q G R + Sbjct: 95 ALLVAPTNEKALINPIRQFIAAGIPVISVDTTISDTAILKSRITSNNVQGGASAARAIAG 154 Query: 161 WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEM 219 +AHGK +V ++ + +GF A + +++V I D+ Q + Sbjct: 155 FAHGKG-DVAVINVKPGISTTDARQKGFLAQMKHYKGMKVVAIEYDDDSPTKAFTEAQLL 213 Query: 220 LERHPEIDVVAGTAIAAEAAMG---EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASD 276 L ++P + + T + + +G K + VV + + LK+G + Sbjct: 214 LLKYPHLKGIFATNVFSGEGVGKAVVAAGKKGKVDVVGYDAEPGEVKLLKQGVISTLIVQ 273 Query: 277 QMVWQGELAVEQAIRQLQGQS 297 + +G L V+ A L G+S Sbjct: 274 RPAEEGRLGVKYAYDILTGKS 294 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 90/268 (33%), Gaps = 12/268 (4%) Query: 57 SYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT--S 114 ++ A + ++V + + ++ Q QID AI++ Sbjct: 40 DVFVMARKNAFIEASKSDPAVEVNFSDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGI 99 Query: 115 FPDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP 173 P ++K A +PVI L + VG G G Y+ + K +L + Sbjct: 100 VPGVEKANQAGIPVIALGIQSAGGKYT-FVGSKNIDAGRLQGEYMKEHL-PKGAKILYLE 157 Query: 174 GPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA 233 G ++E +GF A+ S V + + D + ++ ++ P+ D + A Sbjct: 158 GTPGLSHTQERKKGFEDALGRSDVTTLASLSANYDRAEGMKVTEDWIQSFPKFDAIV--A 215 Query: 234 IAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 + A+G L+ + + + +K G + Q + A E Sbjct: 216 ANDQMALGALEALQGADRLKGVMISGVDGTADALNAIKAGTMSQTIFQDAAGQAKAAFEV 275 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNADR 316 +G+ P +T N + Sbjct: 276 VEGLKKGEDAPAEKLVPFASITKDNVGQ 303 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 112/282 (39%), Gaps = 12/282 (4%) Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 + + P+ + ++ + G + A+ G + ++ Q ID GA+AI Sbjct: 30 IAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMT--HDDDANKQSEMIDTAIGRGAKAI 87 Query: 107 LL---GSSTTSFPDLQKQVASLPVIELVNAIDAPQVK-SRVGVPWFQMGYQPGRYLVQWA 162 +L G+ + + + A +P + I+A V +++ +Q + V+ Sbjct: 88 ILDNAGADASVAAVKKAKDAGIPSFLIDREINATGVAVAQIVSNNYQGAQLGAQEFVKLM 147 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLE 221 K N + + G ++ + +G+ I P ++ V + + ++ +L+ Sbjct: 148 GEKG-NYVELVGKESDTNAGIRSQGYHDVIDDYPDLKSVAKQSANWSQTEAYSKMETILQ 206 Query: 222 RHPEID-VVAGTAIAAEAAMGEGRN-LKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMV 279 +P+I V++G A A+ + + + VV F S+ V +K G + Sbjct: 207 ANPDIKGVISGNDTMAMGAIAALQAAGRKDVIVVGFDGSNDVRDSIKSGGIKATVLQPAY 266 Query: 280 WQGELAVEQAIRQLQGQSVSDN--VSPPILVLTPKNADREHI 319 Q +LAVEQA ++ ++ +++ NA + Sbjct: 267 AQAQLAVEQADAYIKNKTTPKEEKQLMDCVLINADNAGKLET 308 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 104/298 (34%), Gaps = 16/298 (5%) Query: 32 TVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 + A++ +A + + + + L+D + M++ A GV L + ++ + ++ Sbjct: 27 SSNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNITDSKK--DVGSE 84 Query: 92 QAQIDQCKQWGAEAILLGSSTTSFPDLQKQ---VASLPVIELVNAIDAPQ---VKSRVGV 145 Q++ +A+++ + A++P+ L KS +GV Sbjct: 85 LNQVEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEFAEGSDVGYKSYIGV 144 Query: 146 PWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALG 205 G YL + N++ G A + GF I +IV Sbjct: 145 DDTVAGQMQAEYLNKLM-PNGGNLVFAAGVYGASWTDRRKNGFDKTI-NENFKIVAEFQA 202 Query: 206 DNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLT------VVSFYLSH 259 + + +++ L+R P + A A E A+G + VV + Sbjct: 203 KGSRDDAKRNMEDTLQRFPSGQIDAVVANNDEMAIGAASAIADAGRTAEFKAVVGVDGTE 262 Query: 260 QVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 + ++ G + QG AVE L G +V + + P ++T N Sbjct: 263 PALQDIEGGTMSATVRQDSAGQGVKAVEVVTDFLNGGNVDNRYTLPFTLITKDNLSEF 320 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 59/329 (17%), Positives = 131/329 (39%), Gaps = 23/329 (6%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 ++++F+LL ++ +L + ++ Q + K A Y + + ++ Sbjct: 7 KIVIFILLIFTVVFILINLKVLEGNGGENSARQIGS------RKKFGATYMTTNNRFYEI 60 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST---TSFPDL 118 +N ++ G L +A Q QI + + +AI + + Sbjct: 61 INDEIRSVVESNGDILVTRDAAL--DKNKQMQQIYEFIKLKVKAIFINPVDWKQIKPALI 118 Query: 119 QKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + A +PVI + + D V V + G Q +YL++ N++L+ Sbjct: 119 AAKNAGIPVIVVDTPVYDDKLVACTVISDNYDAGVQCAKYLMKSK--SKANIMLIEHSKA 176 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 G + ++GF I S +IV + ++ +L+ +++++H +D + A+ Sbjct: 177 KSG-IDRIKGFVDTIGASKQYKIVAAGDSEGQLDKTMSLVDDLIKKHTNVDAIM--ALND 233 Query: 237 EAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 +A+G LK + V S + + G + ++ G +A E+A Sbjct: 234 PSALGALAALKENGLLGKVMVFGVDGSPEAKTMIHDGFMTATSAQFPNKIGHIAAEKAYD 293 Query: 292 QLQGQSVSDNVSPPILVLTPKNADREHIR 320 L+G+ + +V PI +++ +N + I Sbjct: 294 ILKGKRLKRDVIVPISLISKENLLKYEIS 322 >UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional regulator n=83 Tax=Proteobacteria RepID=B2JDH5_BURP8 Length = 321 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 113/276 (40%), Gaps = 10/276 (3%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 K+ + L + Y++++ + +AA G + V +A + ++ Q + ++ Q + Sbjct: 46 KIGMTFQELNNPYFVTMQKALNDAAASIGATVVVTDA--HHDVSKQVSDVEDMLQKKIDI 103 Query: 106 ILLGSSTTSF--PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAH 163 +L+ + ++ + + V+ V+A V S VG F G YL + Sbjct: 104 LLVNPTDSTGIQSAVTSAKKAGAVVVAVDANANGPVDSFVGSKNFDAGQMSCEYLAKAIG 163 Query: 164 GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLER 222 G V ++ G E V G +AA+A P V++VD G + ++ + M++ Sbjct: 164 GSG-EVAILDGIP-VVPILERVRGCKAALAKFPNVKVVDTQNGKQERATALSVTENMIQA 221 Query: 223 HPEIDVVAG-TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKR--GRVIMAASDQMV 279 HP + + + A+ + + + S + + +++ + I ++ Sbjct: 222 HPNLKGIFSVNDGGSMGALSAIESSGKDIKLTSVDGAPEAITAIQKPNSKFIETSAQFPR 281 Query: 280 WQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 Q LA+ A+ + G +V + + ++ NA Sbjct: 282 DQIRLAIGVALAKKWGANVPKTIPVDVKLVDKDNAK 317 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 105/282 (37%), Gaps = 18/282 (6%) Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 + +L + +++ LN G+++ +G L L+A Q+ + + AI Sbjct: 51 FAVSFQTLNNPFFVDLNDGLKQVIDEHGDRLVTLDAQ--FSSLKQKNDLSDVIEQKPAAI 108 Query: 107 LLGSS---TTSFPDLQKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 L + + + A +PVI + + DA V ++V G + L Sbjct: 109 FLNPVNWESVRATLIAARNAKIPVIVVDAPVPDADLVLAQVASDNVAAGRLAAQALGDA- 167 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEML 220 V ++ N + V GF +A S I+ E R +++++L Sbjct: 168 -RPQAKVAILQYSVNK-ACVDRVAGFTDVLAKSFPGATIIARQDVKGTSEATRPVMRDLL 225 Query: 221 ERHPEIDVVAGTAIAAEAAMG-----EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAAS 275 R P++D V I A+G + + VV+ S + + + G + ++ Sbjct: 226 GRFPDLDAVFP--INDPGAIGCVSAIDAAGRSGKVLVVTVDGSREAAQFILNGGIHSTSA 283 Query: 276 DQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 G LA A L G+ V + P+ ++T NA Sbjct: 284 QFPKKIGSLAAGAAYDHLAGKPVDKEIKVPVTLVTKANAAEF 325 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 54/300 (18%), Positives = 124/300 (41%), Gaps = 18/300 (6%) Query: 31 FTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLAT 90 F+ + K+KR + ALY ++ + Y+ +N ++ G L+ ++G Sbjct: 35 FSRNKNESEKSKR--TIGALYMTMNNPYFEVINEEIKAVVESKGDVLETRDSG--MDAKV 90 Query: 91 QQAQIDQCKQWGAEAILLGSST---TSFPDLQKQVASLPVIELVNAI-DAPQVKSRVGVP 146 Q Q+++ + + IL+ + + + A +PVI + I + V V Sbjct: 91 QAKQVEKFIEEKVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALIYNRSFVDGTVVSN 150 Query: 147 WFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIAL 204 +Q G Q + L++ K +L + +N + + ++GF+ + + V Sbjct: 151 NYQAGEQCAKDLMK--RRKKGKILFLVQSENKS-AIDRIKGFKETLEKAGWKYENVGELE 207 Query: 205 GDNDIEIQRNLLQEMLERHPEIDVVAG----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQ 260 +E+ + L++++L + +IDVV +A+ A AA+ ++ + + V S + Sbjct: 208 CQGQLELSQPLVEKVLNKTKDIDVVMALNDPSAMGAMAALDA-EHMLSDVLVYGADGSPE 266 Query: 261 VYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 + ++ ++ G+ VE + L G+ P+ ++T N + + Sbjct: 267 AKTMIYENKMAATSAQSPRTTGKKTVEMLYKILDGKKTEKQCIVPVSLITKDNINDYSLS 326 >UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR03_9FIRM Length = 332 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 119/325 (36%), Gaps = 15/325 (4%) Query: 2 RVLLFLLLS---LFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSY 58 ++++++L++ LF+L + +A + + + + Sbjct: 4 KIMIYILMAVGTLFLLTGCKKNVGTPEDNAVTDESDDKKEDTDQEKKVFGFCGIDMSNPF 63 Query: 59 WLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST--TSFP 116 + +L +Q A G L + + G Q QI + + +A+ L P Sbjct: 64 YATLKDSVQSALEEQGDKLLIKDPAG--DAERQNTQIQELIEEDVDAVFLCPVDWKKIEP 121 Query: 117 DLQK-QVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 L + A +PVI L + ++ +V + VG GY G LV+ V+++ Sbjct: 122 ALDALEEADIPVINLDTKVYESGKVAAFVGSDNRNAGYVCGEDLVER-KPDGGQVVIVE- 179 Query: 175 PDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA-GTA 233 N E + GF A++ +V ND+ + + ++L ++P++D + G Sbjct: 180 NLNVNSVCERITGFEEAVSKGAFEVVKRIQTGNDVSGLKQQVAQVLAQNPDLDAIMCGDD 239 Query: 234 IAAEAAMGE-GRNLKTPLTVVSFYLSHQVYRGL--KRGRVIMAASDQMVWQGELAVEQAI 290 AE + + V S S + L G ++ + + G+ AV+ A Sbjct: 240 QMAEQVREAITEAGQEKVYVYSVDGSPASKKALVEHTGGMMGIGAQSPINLGKKAVKIAN 299 Query: 291 RQLQGQSVSDNVSPPILVLTPKNAD 315 L G+ + N + Sbjct: 300 AVLNGEDYEKETYEETFFINRDNVE 324 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 52/339 (15%), Positives = 112/339 (33%), Gaps = 29/339 (8%) Query: 2 RVLLFLLLSLFM----LPAFSADNLLRWHDAQHFTVQASTPLKAK----------RAWKL 47 +++ LL + M L + A A+ P ++ Sbjct: 10 KIVSILLAATMMAGCILTGCGSAESGSLEAADKVAETANAPAAGNGEEGPGGTSGEPAEV 69 Query: 48 CALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL 107 + + +++ + M++ + + + TQ +Q++ G +AI+ Sbjct: 70 SVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVENQILNGTQAII 129 Query: 108 LGSSTT--SFPDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHG 164 + S P ++ + A +P+I S VG G R+ + G Sbjct: 130 CLAVDAKQSEPIVRACKEAGVPLIAFNRIF--ENCDSFVGADGAVAGSLLARFTGEKTGG 187 Query: 165 KPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLER 222 K NV ++ G + + +++V GD + L++ L+ Sbjct: 188 KG-NVAIVNGIMGQENQFIRRDAIVETLGEMYPDMQVVIEGAGDWKRDKALQLVETWLQS 246 Query: 223 HPEIDVVAGTAIAAEAAMG-----EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQ 277 +ID + + + AMG E + V ++ G++ Sbjct: 247 GTDIDAILC--LNDDMAMGTQLAVEQAGKSDDIIVCGVNGDPDGINAVRDGKIAATVFQN 304 Query: 278 MVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 Q E A+E A++ + G+ + P ++T N D Sbjct: 305 PDRQAEEALEAALQYIHGEKPESKIMIPFELVTADNVDD 343 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 57/318 (17%), Positives = 114/318 (35%), Gaps = 21/318 (6%) Query: 28 AQHFTVQASTPLKAKRA-----WKLCALYPSLKDSYWLSLNYGMQEAARRY---GVDLKV 79 + T +A +A + + + S+ +S+ + A + GV + Sbjct: 27 GKEETTKAQVSSEAAKPSNDGGYVVALCNYSIGNSWRAQMEQEFVAEAEKLKAEGVVSEY 86 Query: 80 LEAGGYSQLATQQAQIDQCKQWGAEAILL--GSSTTSFPDLQKQV-ASLPVIELVNAIDA 136 + Q + + + I++ S T P +++ A + V+ N +D Sbjct: 87 YITNSNDDINKQISDMQDLITKKVDGIVITAASPTALAPAVEEATEAGIKVVSFDNVVDT 146 Query: 137 PQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP 196 + + VG+ + G +LV+ GK ++++ G G P Sbjct: 147 DEQVATVGIDQTEFGRVCADWLVKKLDGKG-KIVVLNGIAGTANDTMRWNGAEEVFKQYP 205 Query: 197 -VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVV--AGTAIAAEAAMGEGRNLKTPLTVV 253 + I+ A D + ++ ML +PEID V G A+ A + + + Sbjct: 206 DIEILGSANASWDYAQGKAAMESMLSAYPEIDGVWSQGGAMTQGAIDAFIAAGRKLVPMT 265 Query: 254 SFYLSHQVYRGL---KRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLT 310 S ++ R + + A + G A+ I+ L G+ V V+ I V+T Sbjct: 266 S-EGNNGALRAWIENRDNGLSCIAPSDPTYSGAEALRTVIKSLDGEEVPKRVTLDIPVVT 324 Query: 311 PKNADREHIRRSLSPGGF 328 N D+ + + P F Sbjct: 325 EDNVDKYYRQDM--PDSF 340 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 59/284 (20%), Positives = 117/284 (41%), Gaps = 15/284 (5%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 ++ K A Y ++ + Y+++++ ++E+ + G L + Q QI Sbjct: 24 TRKQLKFGATYMTMNNPYFVNMDENIEESVQAKGDILITRDP--LQDQKKQNEQIKDMIN 81 Query: 101 WGAEAILLGSST--TSFPDLQK-QVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGR 156 G + + L P L+ + +PV + + + D V S + + G Q + Sbjct: 82 EGIDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDTEAVVSTIVSDNYDAGVQCAK 141 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 +++ N++++ E V+GFR I G P +IV+ + EI + Sbjct: 142 DMMKKK--TSANIIIVN-QKALNSINERVKGFRDTIKGHPQYKIVEEKESAAEFEIAMKV 198 Query: 216 LQEMLERHPEIDVVAG----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVI 271 +++++ DVV G A+ AAM + + V S +K G + Sbjct: 199 MEKIIYEKKNYDVVMGGNDPIALGCIAAMQMT-DKTDQVMVYGVDGSPDGKAMIKAGFLE 257 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 A+ + GE AV+ A L G++V +V+ P+ ++T N Sbjct: 258 GTAAQSPIKIGEKAVQTAYSYLAGETVKKHVTIPVELITADNLK 301 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 113/292 (38%), Gaps = 14/292 (4%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 A + + ++ + Y ++ ++ AA +V A A Q A ++ Sbjct: 43 ADGKYVIGMSQANVAEPYRQRMDDDIKAAAAEV-PQFEVKFADAAQDNAKQVADVENYIT 101 Query: 101 WGAEAILLGSSTT---SFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRY 157 + +++ + + + +PV+ L ++ +G Q+G + G+Y Sbjct: 102 QQIDLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGDAYTGFIGGDNVQIGTEAGKY 161 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLL 216 + + NV+ + G A E +GF I +P V++V A GD E + + Sbjct: 162 VAEKVLPNGGNVVEIKGLAGATPQAERNQGFATGIKANPKVKVVATASGDWLREKGQAQM 221 Query: 217 QEMLERHPEIDVVAG-TAIAAEAAMGEGRNL--KTPLTVVSFYLSH---QVYRGLKRGRV 270 +L+ +P+IDVV AE A + + + + + + +++GR+ Sbjct: 222 DALLKANPKIDVVYAHNDPMAEGAYLAAKAVGREKEMKFIGIDALPIPSGGIKAVEQGRL 281 Query: 271 IMAASDQMVWQGELAVEQAIRQL-QGQSVSDNVSPPILVLTPKNADREHIRR 321 + G+ A+ A + L ++ + P ++ NA + + + Sbjct: 282 TATFTYPTN--GKEAIAAAKKLLVDCGTIEKTQTLPTRLIDKTNAAQIYAQE 331 >UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Firmicutes RepID=C8WV69_ALIAD Length = 349 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 95/280 (33%), Gaps = 26/280 (9%) Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS--STTSF 115 YW GMQ AA+ GV A Y + + + Q IL+ S + Sbjct: 69 YWKGCFAGMQAAAKDLGVKAVFTGAPQY-DINQEVTTMQQVIAKHPAGILVTSINAQAMT 127 Query: 116 PDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 P + + +A +PVI + + + +G + G + YL Q G ++ Sbjct: 128 PVINQAIAAGIPVISFDSDAPQSKRYAYLGTSNIEAGQKAADYLGQALGGHGEVAVITT- 186 Query: 175 PDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT 232 + V+GF+ +A V++V + G++D + +L+ +P + + T Sbjct: 187 -PGELNLDQRVQGFKDEMAAKYPGVKVVAVQNGNSDQIKTAQVTSALLQTYPNLAGIFCT 245 Query: 233 ----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 A A+ E + +VSF +K G++ + G + Sbjct: 246 EADEGTGAATAVQEA-GKTGTVKIVSFDTDKATLNAIKSGQITATVAQGTWNMGFWGLMD 304 Query: 289 AIRQLQG-------------QSVSDNVSPPILVLTPKNAD 315 V V + ++T N + Sbjct: 305 LFAIHHNLVHPVANWQQSGVDPVPPEVDTGVTIVTKSNVN 344 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 116/289 (40%), Gaps = 15/289 (5%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 R A Y ++ + ++ +N ++ + G + L+ Q QI Q + Sbjct: 42 TRKKLFGATYMTMNNEFYKIVNNQIRMQVEKNGDQMITLDPAL--DQKKQNEQIKQLVKR 99 Query: 102 GAEAILLGSSTTSFPD---LQKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRY 157 +AI L + + + A +PVI + + + + V + ++ G + Sbjct: 100 KVDAIFLNPVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSDLVAMTIVSDNYKAGVLCAKE 159 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLL 216 +++ N++L+ + + + GF I + +I+ A IE + Sbjct: 160 MMKQKD--QANIVLLTHNAARS-AVDRINGFLDTIKNNKNYKILASADTQGQIERALPKV 216 Query: 217 QEMLERHPEIDVVAG----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIM 272 +++E + IDVV G A+ A AA+ + + + + V S + + +K G + Sbjct: 217 DKIIEEYQNIDVVMGLNDPAAMGALAAL-DSKGAREGVLVYGIDGSPEGKKLIKEGMMTG 275 Query: 273 AASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 A+ + AV A + LQG+ V + ++T KN ++ I R Sbjct: 276 TAAQSPKQMADTAVNAAYQILQGEKVEKKKVISVQMITKKNVEQTDISR 324 >UniRef50_UPI0001C3100C periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3100C Length = 322 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 68/280 (24%), Positives = 113/280 (40%), Gaps = 9/280 (3%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAE 104 ++ L PSL+ ++ + G +EAA++ G ++KV + A+ID G + Sbjct: 42 RVYVLLPSLESDSYVQESRGAEEAAKQIDGAEVKVDAGASRGEATNLIAKIDSAVTKGYD 101 Query: 105 AILLGSSTTSF---PDLQKQVA-SLPVIELV-NAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 I + P L + +A + V+ N D + + VG +Q G GRYL Sbjct: 102 VIAVNPGAVGAELAPALSRAIAADVDVVAFDQNVPDLDDLSAYVGYDGYQAGLLRGRYLT 161 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEM 219 + V ++ + + G A + GS +R+V D R + M Sbjct: 162 KAL-PDGGAVGMIDCFKENPLTAAINRGQLAGMEGSRLRVVSELEAQCDPAKARTAAENM 220 Query: 220 LERHPEID-VVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQM 278 L HPE+ ++AGT IAA AA+ + PL VV R + G I A + Sbjct: 221 LTAHPEMRGLLAGTDIAAMAALPVVESFGKPLVVVGGDGQQDALRVIAEGGGIQATTLFP 280 Query: 279 V-WQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 G AV A+ +G+ V V ++ N ++ Sbjct: 281 FAELGAEAVRTAVAVGRGEQVDAEVMVEPTLIDRANVEKF 320 >UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUV0_PEDHD Length = 343 Score = 147 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 136/342 (39%), Gaps = 24/342 (7%) Query: 2 RVLLFLLLSLFMLPAF--SADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYW 59 +V L LSLF++ D L V+ T K A K+ PS+ Y+ Sbjct: 7 KVWSTLGLSLFLVVGCLPKEDRLNNKKKEGKEVVKGYTSKKDLSAVKVGYSGPSMVAPYY 66 Query: 60 LSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST--TSFPD 117 ++L ++ + +RYG+ + A G +A Q A I+ G + ++L P Sbjct: 67 VALEDVVKRSVQRYGM--QYYTADGQEDVAKQVAAIEDLLSKGIQVLVLNPLDPKAVVPV 124 Query: 118 LQKQVA-SLPVIELVNAIDAPQ-VKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 + + +A + V + + ID S V G G +L + + L + ++ G Sbjct: 125 VNRAIAEGVVVFIVDSMIDEKAAYTSSVVANNTLNGELLGLWLAE-TKNEALKIAIISGN 183 Query: 176 DNAGGSKEMVEGFRAAIAGSPVR--------IVDIALGDNDIEIQRNLLQEMLERHPEID 227 +E GF +A +R IV G + ++++L HP ++ Sbjct: 184 QGNPVGREKRLGFVRGLADGQLRQNAKTNFDIVAQGWGGWNNNGGLKAMEDILAAHPYVN 243 Query: 228 VVAGTAIAAEAAMGEGR-----NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQG 282 V+ A A+G + + +T++ F + + LK G+ A + G Sbjct: 244 VLL--AENDAMALGAYKIIKQMGKENQITILGFDGQKEAFDMLKTGKFEATAQNSPKILG 301 Query: 283 ELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 E +E R L G+ V+ P ++++ KN D + ++L Sbjct: 302 ETIIELVARHLNGEKVNKLNYTPSVLISKKNVDEYYDAKALF 343 >UniRef50_A6LW07 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LW07_CLOB8 Length = 326 Score = 147 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 114/303 (37%), Gaps = 21/303 (6%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLK-DSYWLS 61 VL+ +L++LF+ L + + P+K K L +K + YWL Sbjct: 7 VLVIILIALFLGS------NLYFINLLRDKKVEKEPIKPK-----IVLISHIKTNPYWLD 55 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQ 121 + G + AA+ G ++ L S D I+ + Sbjct: 56 IKAGAERAAKERGAVVEFLGPTTASTEDG-LKLFDMATSAKVSGIITYVQEEGQYKKKIN 114 Query: 122 VA---SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 A +PV+ + + + + VG G G+ +V+ NV ++ G N Sbjct: 115 SAMEKGIPVVTIDSDEEDSNRIAYVGTDNVLAGQVAGKEMVKQIGTSG-NVAIVMGGKNV 173 Query: 179 GGSKEMVEGFRAAIA-GSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT-AIAA 236 KE VEGF I S ++IVD D + + +++L R+ I+ + T A+ Sbjct: 174 KNQKERVEGFTQYIKSNSNLKIVDTDSSDAMLLEAEIITRKILNRNDNINALFCTSALDG 233 Query: 237 EAAMGEGRNL--KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 A ++L K + ++ F ++ G V + G AV + +++ Sbjct: 234 IGAARAVKDLNYKDRVKIICFDDLDDTLSNIRNGLVSATIVQKSNEMGYRAVNIIMDKIE 293 Query: 295 GQS 297 G+S Sbjct: 294 GKS 296 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 147 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 107/284 (37%), Gaps = 16/284 (5%) Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 + + +D+++ L G++E A + L V G LA QQ Q++ AI Sbjct: 37 VGVSLLTRQDAFYRELERGLKEEAAKQ--KLTVRLDAGEFDLARQQGQLENYTVQKVAAI 94 Query: 107 LLGSSTT--SFPDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAH 163 ++ + + P + + A +PV V S + G G Y + + Sbjct: 95 VVCPTDSQGIGPAIARANQADIPVFTADIRAKEGAVVSHIASDNVAGGRLAGEYAAKRLN 154 Query: 164 GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLER 222 G+ V ++ P E V GF A+ P +R+V GD + +++L+ Sbjct: 155 GRG-QVAIIDQPY-IQSVIERVRGFEEALKPYPNIRVVARLTGDGVRDRSLKAAEDLLQS 212 Query: 223 HPEIDVVAGTAIAAEAAMGEG----RNLKTPLTVVSFYLSHQVYRGLKRGR--VIMAASD 276 ++D V A+ E+A G + + V+ + S + + + G+ + + Sbjct: 213 QRKLDAVF--AVNDESAFGVVSAIEAAGRKGIFVMGYDASEEARKLIAGGKSPLQADIAQ 270 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 G+ + L GQ V + P+ ++ E + Sbjct: 271 DPYRIGQETIRAVATHLAGQPVEPVIPVPVRLVDKAALGNETLT 314 >UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribose) n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CTE3_AGRT5 Length = 309 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 61/291 (20%), Positives = 109/291 (37%), Gaps = 20/291 (6%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 A +C + + +Y N + A+ GV+ VL + T QI+ C Sbjct: 21 EAKTVCYVTAADSHAYVTPANKAIDARAKELGVE--VLSLSQNFDVQTGVQQINTCIARK 78 Query: 103 AEAILL--GSSTTSFPDLQKQ-VASLPVIEL---VNAIDAPQVKSRVGVPWFQMGYQPGR 156 A I+L P L K A +PV + +N P V S G + G Sbjct: 79 AAGIILWPLDPQAYIPGLAKAKAAGIPVNLINSPMNDAAKPFVTSFTGPDVYSEGEMAAE 138 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIA--GSPVRIVDIALGDNDIEIQRN 214 L + GK ++++ G G + V+GF A + GS + ++D D D + Sbjct: 139 ALQKALDGKGS-IVIIAGQAGNGTTIGRVDGFNAKLKALGSKIEVLDTVNADFDQQKALV 197 Query: 215 LLQEMLERHPEIDVVAGTAIAAEA-------AMGEGRNLKTPLTVVSFYLSHQVYRGLKR 267 ++++ R D +AG + A E ++ K +V + ++ Sbjct: 198 ASRDLITRF--GDKIAGVYANDDTMARGFIDAWKEAKSGKATPPIVGINGQKDAFESIRN 255 Query: 268 GRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 G + + G LA+ L G+ + + P+ V+T N ++E Sbjct: 256 GEMYATIVQSPIEDGLLAINAMADVLNGKKIDARLPIPLTVVTKANVEKEK 306 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 131/334 (39%), Gaps = 50/334 (14%) Query: 7 LLLSLFMLPAFSADNL-LRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYG 65 L L PAFSAD + + + A + +T K +A+ Sbjct: 15 LATVLTAAPAFSADKIVIGFSQASSNSAHRNTMTKRNQAY-------------------- 54 Query: 66 MQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG--SSTTSFPDLQKQ- 121 AA + VDL V A G S A Q + ++ G + +++ S P +++ Sbjct: 55 ---AAEHFKDVDLIVTNAEGKS--AKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVL 109 Query: 122 VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGS 181 A +PVI L ++D P V VG +G G+Y+ + GK NV+ + G + Sbjct: 110 AAGIPVITLERSLDIP-VTLHVGPHNKPIGTLAGKYIAEALKGKG-NVVEIKGDPAVAPA 167 Query: 182 KEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG 241 E EGF AIAG+ ++++ D D E +++ L+R P + A A A G Sbjct: 168 VERHEGFAEAIAGTEIKVIAETHADWDQEKALKFMEDTLQRFPAGQIQAVYAHNDNMAFG 227 Query: 242 EGRNL------KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMV-WQGELAV-------E 287 R + K + ++ + R + +G + + V +G +A Sbjct: 228 ALRAIQAAGRDKEGILIIGIDGENAAIRAVAKGDLTATFTYSTVAPEGVIAAHALATNDT 287 Query: 288 QAIRQL----QGQSVSDNVSPPILVLTPKNADRE 317 A+ +L + S + ++T +NA Sbjct: 288 AALEKLGTLTKKDDGSMEIEIASKMITKENAAEF 321 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 57/284 (20%), Positives = 110/284 (38%), Gaps = 9/284 (3%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 AK + SL + Y+++L+ + A+ D+KV+ L Q QID Sbjct: 43 AKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKVITVDSNYDLNKQFNQIDNFIA 102 Query: 101 WGAEAILLGSSTT-SFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 G + ILL ++ + K+ + ++ + + A + V Q G +Y+V Sbjct: 103 SGVDLILLAAADPKAIAPAIKRAQNAGIVVMATDVAAVGADATVQTNNVQAGEIACQYIV 162 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIV-DIALGDNDIEIQRNLLQ 217 +++ GP + V G R ++A +P + I+ D G + ++Q Sbjct: 163 DKLGAAGGQIIIQNGP-QISSIIDRVSGCRKSLANNPKITILSDDQNGKCSRDEGMKIMQ 221 Query: 218 EMLERHPEIDVVA--GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRG--RVIMA 273 L RH +ID V A + + + + + S + + + K G R+ + Sbjct: 222 GHLTRHRKIDAVFTVCDPQATGSDLAAQQFGRNEFFIASVDGAPDIEKAFKGGNTRIQAS 281 Query: 274 ASDQMVWQGELAVEQAIRQLQGQSVSD-NVSPPILVLTPKNADR 316 AS + AV+ + G+ + + P +LT N Sbjct: 282 ASQDPYGMAQQAVQIGYEIMNGKKPDNPMILMPSTLLTKDNVAD 325 >UniRef50_Q6W1J5 Putative RbsB, ABC-type sugar transport system, periplasmic component n=1 Tax=Rhizobium sp. NGR234 RepID=Q6W1J5_RHISN Length = 297 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 64/284 (22%), Positives = 118/284 (41%), Gaps = 28/284 (9%) Query: 54 LKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT 113 L D +W G+ +AA R+ VD++ L G +S Q ID + + I+ Sbjct: 15 LGDVFWEVFRRGLLDAAARFDVDVEHLRPGKFS-PEIQAGLIDGARHARPDGIISTVPDV 73 Query: 114 SFP--DLQKQVA-SLPVIEL---VNAIDAPQV--KSRVGVPWFQMGYQPGRYLVQWAHGK 165 + L+ +A +PVI + + + ++ +G F G GRYL++ K Sbjct: 74 AAVEGALKAAIADGIPVICVNAKDSRPEGERIPYLFYIGGDDFNAGELAGRYLLEHV--K 131 Query: 166 PLNVLLMPGPD-NAGGSKEMVEGFRAAI--AGSPVRIVDIALGDNDIEIQRNLLQEMLER 222 P + + + GF++A AG P + + G E + + +E Sbjct: 132 PRAAMCVDHYLYQHICHSDRWHGFKSAFDKAGVPAERLRVPGGQ--PEECAEAVAKYMES 189 Query: 223 HPEIDVV-------AGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAAS 275 +P +D V A + AEA +G GR K ++F ++ G++ GR++ Sbjct: 190 NPNVDAVLTLGPPGAQAVLDAEAIVGAGRTWKH----LTFDVAQLQLDGIRSGRIMATID 245 Query: 276 DQMVWQGELAVEQA-IRQLQGQSVSDNVSPPILVLTPKNADREH 318 Q QG LAV+ + + QG +++ ++ ++ N D Sbjct: 246 SQQYLQGFLAVQHMWMHKTQGFTLAADIYTGPAIVDLSNIDEAE 289 >UniRef50_A4FMX8 Ribose ABC transporter binding protein n=2 Tax=Pseudonocardineae RepID=A4FMX8_SACEN Length = 323 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 116/323 (35%), Gaps = 19/323 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 MR + + S+ +L + + Q + L L + +++ Sbjct: 1 MRRHILAVASVLLLAGCGSGQIGDTGGGQTDPNNRN----------LALLTGMRGEPFYV 50 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT---SFPD 117 S+ ++ A G ++ + Q A Q + A+++ + + P Sbjct: 51 SMECAAKQQAAAAGYNINAQAPEKFEQ-AEQSQMLTGIIGTRPGAVIIAPTDDKALAAPL 109 Query: 118 LQKQVASLPVIELVNAIDAPQVK-SRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 Q + + V+E+ A++ + + + + G + L Q GKP VL + Sbjct: 110 QQAKNNGVQVVEVDTALEDRSIAVASLSSDNYAGGKLAAQTLAQLTGGKPGAVLALNTKA 169 Query: 177 NAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 + E +GF IA P +R++ +N+ ++ L +P++ V T + Sbjct: 170 GTSTTDERAKGFEEEIAKHPNLRLLPTQYTENEPATAAQIVSATLAANPDLVGVFATNLN 229 Query: 236 AEAAMG---EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 G + +V F S + L+ GRV + G V++AI Sbjct: 230 TGEGAGTALANAGRSGQVQLVGFDASPKQVEDLRNGRVQALIAQDPAAIGREGVDRAIAA 289 Query: 293 LQGQSVSDNVSPPILVLTPKNAD 315 ++GQ V ++ +T N Sbjct: 290 IKGQPVERETRTNMIAITKDNMQ 312 >UniRef50_A8FI27 Sugar ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Bacillus pumilus RepID=A8FI27_BACP2 Length = 334 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 114/333 (34%), Gaps = 23/333 (6%) Query: 4 LLFLLLSLFMLPAFSAD--NLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 L F ++S+ L D + + Q + + L + YW Sbjct: 14 LTFCIVSVMFLTLLGQDLFKIESASEKASSAYQ----------YHFVLVPEELDNEYWQL 63 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL---LGSSTTSFPDL 118 + G +AA + V L+ L + + ID + I+ L + Sbjct: 64 VQKGAADAAAAHRVYLEYLGPK-QADIDDHLKTIDMAIAGHVDGIMTQGLDAKKYKPLFQ 122 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 + + + V+ + + + + VG + G+ G+ L+ G+ V ++ G +A Sbjct: 123 KAREKGIDVVTVDTDAEGSKRQVYVGTDNYYSGFIAGQALIADTKGEQY-VGIVTGRLDA 181 Query: 179 GGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT-AIAA 236 K+ V+GFR A+ A + I I ++L H + GT A+ Sbjct: 182 VHQKQRVKGFRDAVAAEKRIHIAGIEESAITKSGASGAAYKLLNDHANLTAFYGTSALDG 241 Query: 237 EAAMGEGRNLK--TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 + + T + V++F + L G + G AVE +R + Sbjct: 242 VGIIQATSQYQSTTDIYVLAFDTLPDTIQALDDGEIDAVVVQHPYEMGYQAVESLVRLQK 301 Query: 295 GQSVSDNVSPPILVLTPKN--ADREHIRRSLSP 325 G+ V+ ++ + R+ + P Sbjct: 302 GEKEEPLQYTGTSVIRREDLPLQQTDRRQGMQP 334 >UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G7J1_ABIDE Length = 360 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 47/324 (14%), Positives = 108/324 (33%), Gaps = 23/324 (7%) Query: 13 MLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARR 72 M A S+ + + + K + + +W + G++E A + Sbjct: 37 MSSAKSSSGAVTSETSSASKSGTGSTASVAGEEKYAIVLKTQSSQFWQDMKAGIEEEAAK 96 Query: 73 YGVDLKVLEAGGYSQLATQQAQIDQCKQWG-AEAILLGS-STTSFPDLQKQVASLPVIEL 130 GV + V + Q ++ G +AI + S + + + S ++ + Sbjct: 97 LGVKVDVQSGNTEDDVEGQVQVLENFVSTGEYKAIGVAPISDVNLNNAIAEGCSKGIVFI 156 Query: 131 VNA--IDAPQVK-------SRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGS 181 IDA + + V ++G L++ G V ++ G A Sbjct: 157 DIDEKIDAKALGELGGGLYAYVATDNKEVGETGAGELLKQV-GNNAEVAIIEGKAGALSG 215 Query: 182 KEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG 241 ++ +G +AA + ++VD D D ++ M+ +P + + AMG Sbjct: 216 EQRRDGAKAAFEAAGAKLVDSQPADWDRTKAMDVATNMISANPNLKAIYCC--NDTMAMG 273 Query: 242 EGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSV 298 +K + V + + + G + + G A+ ++ ++ + Sbjct: 274 AVEAVKKSGKDIKVCGTDGNDDAIKAVADGELAATVAQNPKLVGATALNLMVKAVKENAK 333 Query: 299 SD------NVSPPILVLTPKNADR 316 + +++T NA Sbjct: 334 PEAGAEVTQTGIAAVLITKDNAKE 357 >UniRef50_A6TS00 Periplasmic sugar-binding protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TS00_ALKMQ Length = 337 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 52/320 (16%), Positives = 113/320 (35%), Gaps = 15/320 (4%) Query: 8 LLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQ 67 L+ + + LL W + T+ P + + + D YW + G + Sbjct: 17 LIFILVFLICVTGILLLWLRSSKVTIFTENP-----RYHFYFVGQNAVDPYWKEIRQGAE 71 Query: 68 EAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL--LGSSTTSFPDLQKQV-AS 124 +AAR + V ++ A + + +D + I+ + S + K Sbjct: 72 QAARDHNVVVE-FNAPRFYSPEEELKYLDIAILSEVDGIITHVSSGEDFTTMINKAYYGG 130 Query: 125 LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP--GPDNAGGSK 182 +PV+ + N + VG F +G + G+ +V+ GK +++ +A Sbjct: 131 IPVVTVENDDKISNRAAFVGTNGFLLGTEAGKLMVEATGGKANIAIIVSNNFEPDAASQN 190 Query: 183 EMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAA-- 239 + GF + + P + +V I + Q +L +ID + Sbjct: 191 IRINGFLSELKEYPDMEVVQTYTSRMGILSAEEITQSILNGGKDIDAIFTMTSVDTLGSV 250 Query: 240 -MGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSV 298 + +N +T++ F + R +++G + G +V+ I + +V Sbjct: 251 QLIIDQNKVGEITMIGFGDAESTLRYIEKGIIYGTVMSDPYRMGYESVQALIDIKEKNNV 310 Query: 299 SDNVSPPILVLTPKNADREH 318 S + + V+ +N Sbjct: 311 SSFIDTGVKVIKRENLHEYE 330 >UniRef50_B0K232 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Thermoanaerobacterales RepID=B0K232_THEPX Length = 324 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 109/286 (38%), Gaps = 10/286 (3%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 + + + D +W + G +AA+RY V ++ A ++ + + +D Sbjct: 31 AKTPQYHFYMVAQNSVDPFWKEVKMGAMDAAKRYNVAIE-FNAPKFNNIQEELQYLDIAI 89 Query: 100 QWGAEAIL--LGSSTTSFPDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 + I+ + +S +++ +PVI + N + ++ +G FQ+G + G+ Sbjct: 90 LSKVDGIITHVSNSKEFVDLIEEAYKEGIPVITIENDAKDSKRQAFIGTNSFQLGEEAGK 149 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVE--GFRAAIAGSP-VRIVDIALGDNDIEIQR 213 ++Q GK +++ + ++ GF AI P +++V + Sbjct: 150 LMIQATKGKANIAIIVSNDYQLDTVNQNLKINGFLDAIKDYPQMKVVKVYTSKLGTLSAE 209 Query: 214 NLLQEMLERHPEIDVVAGTAIAAE---AAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRV 270 + Q ++ I+ + T A + N + +V + + + R + +G + Sbjct: 210 EITQSIISSKQNINAIYTTDSVDTIGTAQVIVDFNKVGDIAIVGYGDTADILRYIDKGII 269 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 G +V+ + + +VS V + V+T N Sbjct: 270 YGTVMSDPYRIGYESVKSMVEIKEKNNVSTFVDIGVNVITKDNVKE 315 >UniRef50_C1D5Z3 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D5Z3_LARHH Length = 332 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 63/306 (20%), Positives = 123/306 (40%), Gaps = 22/306 (7%) Query: 29 QHFTVQASTPLKAKRA---WKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGY 85 T A++P K ++ + SL + Y++ + G ++A +L V G Sbjct: 30 AVTTASAASPESGKATGNLPRIALVMKSLSNPYFIEMEKGARQAQTENRAELFVKAVGLE 89 Query: 86 SQLATQQAQIDQCKQWG-AEAILLGSSTTS--FPDLQKQ-VASLPVIELVNAIDAPQVKS 141 + + Q ID A+AI++ + +S P + + A + +I L +DA + Sbjct: 90 TSIDQQIQFIDDIINNKLADAIIIVPADSSRLAPVIARAHKAGIHIINLDTRLDADALAQ 149 Query: 142 -------RVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG 194 +GV + Y+ +L K V ++ G NA + EG R A+ Sbjct: 150 EGIGPLPFIGVDNHRAAYKAAAHLAASLPPK-SEVAIIEGNSNAINALRRSEGARQALEA 208 Query: 195 SPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTP----L 250 + +R+V IE + +L+++PE+ + I+ A+G R L + Sbjct: 209 AGMRLVPSQS-SWTIEQAYEITGNLLKQNPELRGIYC--ISDLIALGVIRYLADHGIRQV 265 Query: 251 TVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLT 310 V F Q L +++ + QG L+V+ A+ + G+ V+ + +LT Sbjct: 266 KVAGFDGIAQARAALASNQMVATVDQRPAEQGYLSVKAALDAIAGKPVTGQIKVETELLT 325 Query: 311 PKNADR 316 + + Sbjct: 326 RTSVRQ 331 >UniRef50_Q2S7D2 ABC-type sugar transport system, periplasmic component n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7D2_HAHCH Length = 318 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 107/278 (38%), Gaps = 11/278 (3%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI-DQCKQWG 102 KL + ++YW + G Q+AA GV L +A Q + Q Sbjct: 38 QPKLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAP 97 Query: 103 AEAILLGSSTTS--FPDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 +A++L ++ P + + A ++PV+ + + + + V + G R L+ Sbjct: 98 PDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLAGDAHQGLVATDNYAAGQLAARALL 157 Query: 160 QWAH-GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEIQRNLLQ 217 K N+ L+ + + +GF + +RI+ +D R+ + Sbjct: 158 ATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEML 217 Query: 218 EMLERHPEIDVVA----GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMA 273 +L+ P ID + T I A A+ + + + F + ++ + G + Sbjct: 218 RLLKETPTIDGLFTPNESTTIGALVAIRQS-GMSKQFGFIGFDQTEELEAAMYAGEISNL 276 Query: 274 ASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTP 311 + G LAV++A+ ++G+ + + +L P Sbjct: 277 VVQNPEYMGYLAVQRALDLVRGKPIPAFTDTGVRLLQP 314 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 61/324 (18%), Positives = 117/324 (36%), Gaps = 22/324 (6%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 V L + F+L ++D+ + ++ + +P D + L Sbjct: 10 VALIIYCLSFLLVGCASDSDEQMG------TESVNKAGDDGKMVIGFAHPDFNDMFLGFL 63 Query: 63 NYGMQE-AARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL---LGSSTTSFPDL 118 G+Q A + V++ ++A S Q AQ++ G +AI+ + T F Sbjct: 64 LAGVQAYEAEQTNVEVVYVDAENDSD--GQIAQVEDLIAQGVDAIMAIPVDLIATEFIVD 121 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 + Q A +PV+ + + + VG Q G + GK + +M G Sbjct: 122 RAQQAGVPVVLINRDS-VEREDAYVGSDSLQAGTIQMEEVAAVLKGKG-KIAIMNGQMGH 179 Query: 179 GGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 G + + P + +V G E + L++ +E D V E Sbjct: 180 TAQINRTLGNKQVVDQYPGMEVVIEGTGGWSREKGKELMESWIESGQTFDAVVAN--NDE 237 Query: 238 AAMG-----EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 A+G E + L + + +G++ ++ QG+ +EQAI+ Sbjct: 238 MAIGAIMAAEEAGIVDELVFAGIDGTPDALDYMSKGKLTISVFQDAKGQGQTGLEQAIKL 297 Query: 293 LQGQSVSDNVSPPILVLTPKNADR 316 +G+S + P +T +N D Sbjct: 298 AKGESAEKMTNIPYETITKRNVDE 321 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 100/291 (34%), Gaps = 11/291 (3%) Query: 32 TVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 + + + + + D++ ++ ++AA+ GVDL + +A G + Q Sbjct: 24 GNKKESKSGGEDKITIGFSSKTNSDTFVKAIADAAEDAAKEQGVDLIMADAEG--DVNKQ 81 Query: 92 QAQIDQCKQWGAEAILL--GSSTTSFPDLQ-KQVASLPVIELVNAIDAPQVKSRVGVPWF 148 + +A+++ S P + A +P+I I + VG Sbjct: 82 INDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIPIIICNGDIADKNYTAFVGCTDQ 141 Query: 149 QMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDND 208 + G G + + ++ GP G GF ++ + Sbjct: 142 ESGEILGTWFNDNVE-HGSQICIIEGPMGQSGQVGRYAGFEEVGMLDNFEVLSCQTANWK 200 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEG----RNLKTPLTVVSFYLSHQVYRG 264 + L ++ L + + + A + AMG +T + + + Sbjct: 201 RDEAMALAEDWLTTYGD-KLKAIVCENDDMAMGALSACKAAGRTDVVIGGVDGLEDAIQA 259 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 +K G + ++ QGE AVE A++ + G+ + P +T N D Sbjct: 260 VKDGELGVSVLQDSAGQGEGAVEVALQIINGEDYQKDTRIPFHAITSDNVD 310 >UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET05_9FIRM Length = 336 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 54/300 (18%), Positives = 118/300 (39%), Gaps = 15/300 (5%) Query: 32 TVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 A+ + K + + L S + + + + G ++ A G ++ V++ + + Sbjct: 41 DTAAAAQGEGKDGYTIAVLAWSQAEEFGVDIISGAEKKAAELG-NVTVVKPDPAGDMQKE 99 Query: 92 QAQIDQCKQWGAEAILLGSSTT-SFPDLQKQVASLPVIELVNAIDAP-QVKSRVGVPWFQ 149 A ++ Q G +AI + + +V ++ + ID Q ++V Sbjct: 100 IAILEDLIQQGVDAICVAPVDANAIVPYIDKVREAGIVLVDYDIDTEAQCDAKVLSDNAA 159 Query: 150 MGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRI-VDIALGDND 208 G YLVQ + VL++ ++E + GF+ +A + + L + Sbjct: 160 GGAMAADYLVQEMGTEG-KVLILTEVPGVTTAEERIAGFKDRMAEIAPNVEMVEQLSNGT 218 Query: 209 IEIQRNLLQEMLERHPEIDVVAGT----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRG 264 + R + ML+ HP+I + ++ A A N + + + + + + Sbjct: 219 RDTHRATTENMLQAHPDITGIFCFMGDNSLGAYTACKT--NNRQDVLIAGYDATPEQLDI 276 Query: 265 LKRGR----VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 +K +I + + G +A+E A L+G+ ++D V + +LT K+AD Sbjct: 277 MKNDGPDCNLICSVALYPKKIGYVALETAYNILEGEEINDVVWTELGLLTAKDADSFEAE 336 >UniRef50_A3DCF2 Sugar ABC transporter (Sugar-binding protein) n=4 Tax=Clostridiales RepID=A3DCF2_CLOTH Length = 321 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 121/329 (36%), Gaps = 16/329 (4%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ L LLL++ ++ F+A N P + + + YW Sbjct: 1 MKRFLVLLLAISLIFTFTACNSGSGSGNGQAKGYVGDP---SDEYYMVTFLSGI--DYWK 55 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS--STTSFPDL 118 G ++AA+ GV K + ++ Q A ++Q + I + + ST + Sbjct: 56 YCFEGFEDAAKAIGVTAKYTG-QTDTDVSGQVAVLEQVIAQKPKGIAVTAVNSTALADTI 114 Query: 119 QKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + + V+ + + +G + G + +LV + K +L Sbjct: 115 NSAIEQGISVVCFDSDSPTSNRSAYLGTGNYAAGQKAAEFLVPLVNYKGKIAVLYT--VG 172 Query: 178 AGGSKEMVEGFRAAIAGSPVRIVDIALGD-NDIEIQRNLLQEMLERHPEIDVVAG-TAIA 235 A S+ V+GF + + + + D D + + L L+ + +I V +A Sbjct: 173 AENSESRVQGFEDWCKQNAPEVSLVKVNDAGDTTVAADNLAAALQANDDIVGVFCVDGVA 232 Query: 236 AEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQG 295 A K L V++F + V +K G + + M G ++ + G Sbjct: 233 GTAGPTAVAESKKDLRVLAFDVDVTVLDKVKSGEIDGTVAQGMYNMGYWSLMMLYTEANG 292 Query: 296 ---QSVSDNVSPPILVLTPKNADREHIRR 321 +++ N+ ++++T N D + ++ Sbjct: 293 LSSKALPGNLDTGVVIVTKDNVDEYYPKK 321 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 58/298 (19%), Positives = 115/298 (38%), Gaps = 22/298 (7%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCK 99 A A + A D + L GM++ A+ GVDL++ +A + +A QQ+QI Sbjct: 17 AAHAETIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQIEDA--LNDVAKQQSQIQNFI 74 Query: 100 QWGAEAILLGSSTTSFPDL---QKQVASLPVIELVNA---IDA-PQVKSRVGVPWFQMGY 152 G +AI++ T + A +P++ + ID P+ ++ V G Sbjct: 75 AAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNIDTLPEKQAFVASNEVDSGT 134 Query: 153 QPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG---SPVRIVDIALGDNDI 209 R + + GK V++M G + ++ + +A + IV + Sbjct: 135 LQTREICKLLDGKGKAVVIM-GELSNQAARMRTKDIHDVLATDQCKGIEIVQEQTANWQR 193 Query: 210 EIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK------TPLTVVSFYLSHQVYR 263 +L+ L E D V E A+G + LK + + + Sbjct: 194 TQGADLMTNWLSAGIEFDAVIAN--NDEMAIGAIQALKAAGRSMDSVVIGGIDATDDALA 251 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 + G + ++ V QG+ +++ A++ +G++V + P ++T N + Sbjct: 252 AMAAGELDVSVFQDAVGQGKGSIDAALKLSKGEAVERKIYIPFELVTKANLAEFQGKN 309 >UniRef50_Q7MCP2 ABC-type sugar transport system, periplasmic component n=4 Tax=Proteobacteria RepID=Q7MCP2_VIBVY Length = 318 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 106/285 (37%), Gaps = 20/285 (7%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 ++ + L+ +W + G++ A++ G + VL A + T+ I + + Sbjct: 23 QIVYMVSDLRIPFWQIMWGGIENEAKQLGYEAVVLSA--ENDAKTELENIIKAIALKPDG 80 Query: 106 ILLGSSTTSFPDLQ---KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 I+L + +S + A++PV+ + S + F +Q + L Sbjct: 81 IILSPTNSSAAVTILKMAEQANIPVVISDIGTEGGTFVSYIESDNFSGAFQLAQILAAAM 140 Query: 163 HGKP---LNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDI-ALGDNDIEIQRNLLQE 218 K V ++ P E EGF A +RI I D + Q Sbjct: 141 KAKGWQNGEVGVVAIPQKRKNGIERTEGFVEAAKQQGMRIAAIKQQKDFSYQETFIFTQT 200 Query: 219 MLERHPEIDVV-------AGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVI 271 ML H +I + A+ A ++G+ + + ++ F + ++ +++ Sbjct: 201 MLREHRKIRAIWLQGSDRYQAALDAIDSLGQ----RDKVLLICFDAEPEFIDMIRSQQLV 256 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 + Q GE A+ + L G +V+ +L ++ +N D Sbjct: 257 GSGMQQPFLMGERAMNSLHQYLLGHTVAKEQQLEVLAVSSQNLDS 301 >UniRef50_C6CRC9 Sugar ABC transporter (Sugar-binding protein) n=9 Tax=Bacillales RepID=C6CRC9_PAESJ Length = 337 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 99/285 (34%), Gaps = 24/285 (8%) Query: 57 SYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF- 115 YW + G ++AA GV ++ + + + ++Q I + + + Sbjct: 56 DYWKNGLKGFEDAAEALGVSVEYRGS-TQYDVQEEMMVLEQVIARSPAGIAVSAIDSEAL 114 Query: 116 -PDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP 173 P + K V A +PV+ + S +G + G R + + G V ++ Sbjct: 115 NPAINKAVEAGIPVVMFDADAPRSKAYSYIGTNNYNAGVTAARKMAELTGGTG-KVGVIT 173 Query: 174 GPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG 231 P N +E GF + +++V IA G D I ++++L + ++ + Sbjct: 174 LP-NQLNHQERTRGFEETLEKEFPDLQLVGIADGKGDQMISEQKVRDLLSKFTDLSGIFV 232 Query: 232 TAIAAEAAMGEG---RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 T G N + ++SF +K G + + G ++ Q Sbjct: 233 TEANGGVGAGNAILRLNKLDQVKIISFDTDKGTLDMVKSGTISATLAQGTWNMGYWSLMQ 292 Query: 289 AIRQLQG-------------QSVSDNVSPPILVLTPKNADREHIR 320 + N+ I V+TP + D+ + + Sbjct: 293 LFHLRNHIVNPMSDNGDSSIPPLPTNIDTGITVVTPGDVDQFYAK 337 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 110/282 (39%), Gaps = 16/282 (5%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 K+ + D++ + L E A+ G+D++ L+A G S L Q Q+++ A A Sbjct: 70 KVIYANHNDDDAFAMQLKNTFAEKAKSAGLDVEFLDAKGDSNL--QIDQLNEAISNKAAA 127 Query: 106 ILLG--SSTTSFPDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 I+L T+ P ++K A +PV+ + ++ P+V + + G G ++ Sbjct: 128 IVLLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPKVIGSL-SDDREAGRMQGEFMASHL 186 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAI--AGSPVRIVDIALGDNDIEIQRNLLQEML 220 V+ + G + + + EGF+ A V+++ G + L Sbjct: 187 -PPNAKVVYLMGESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSWSKAEGMKAMTLWL 245 Query: 221 ERHPEIDVVAGTAIAAEAAMGEGRNLKTPLT-----VVSFYLSHQVYRGLKRGRVIMAAS 275 PEI+ V A E A+G + LK V + ++ G + Sbjct: 246 SFFPEINGVV--AANDEMALGAIQALKAANRLNGCLVTGVDATPAGLAAVEAGELSQTVK 303 Query: 276 DQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 Q AV L G++ ++++ P +T +N + Sbjct: 304 QDAEGQAAGAVTLVQGFLSGKAPTESLDIPFTSITRENVAQF 345 >UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3A4_9PROT Length = 303 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 112/286 (39%), Gaps = 11/286 (3%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQ 97 P A + ++ + + + Y +++ RY L + + Q + QI+Q Sbjct: 17 PAVAAENKVIAFAQDTMANDFRRAQVYEVRDEVARY-PQLSFVYSDAQGQTSLLIRQIEQ 75 Query: 98 CKQWGAEAILLGSST--TSFPDLQKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQP 154 + + ++LG++ P + K A +PVI L I+ Q S + ++G Sbjct: 76 FIEQKVDLLVLGTNDEQAVVPVVTKAYQAGIPVIVLDRGINGKQFTSFINSDNIRIGEIG 135 Query: 155 GRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRN 214 Y+ +GK L VLL G A ++ +GF I V G+ + Sbjct: 136 AEYIASRLNGKGL-VLLFEGLQKADVTQLRSKGFLTEIGKHSGIRVIRRTGNYLRKDAVV 194 Query: 215 LLQEMLERHPEIDVVAGTA----IAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRV 270 +++++ +D + + + + + +V + + + ++ G Sbjct: 195 EMEKLVSDGIRVDAIFSESDSMLSGVRMVLSKSNIDPRSVVMVGCDYTSEARQAIRDGTQ 254 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 + G+ AVE A++ G+SV ++ P+ ++T N ++ Sbjct: 255 SGSVLFP--LGGKKAVEIALKIFAGESVPKHIYNPVKLVTKDNVEQ 298 >UniRef50_C2L154 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=1 Tax=Oribacterium sinus F0268 RepID=C2L154_9FIRM Length = 373 Score = 144 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 102/286 (35%), Gaps = 11/286 (3%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQID-QCK 99 + +K+ + + YW + G + + + V ++V A + QQ I+ Sbjct: 77 EGDYKIDVILKTTSSEYWSYVVAGAKAFEKDHPNVKVEVKGASSETAYDEQQNMIETDLN 136 Query: 100 QWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 + ++ + P++ + IDA +V S VG + G+ V Sbjct: 137 SGSYDGYVIAPLQADLVKTLIAGQTKPIVAVDTNIDAKEVLSFVGTSNDTAAKEGGKAAV 196 Query: 160 QWAHGKP---LNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVD--IALGDNDIEIQRN 214 + A + + + + G G + ++G++ I + ++ I D + Sbjct: 197 EEAKKRGWTEIKAISISGVQGDGTATARLKGYQEGINEAGGEFLEKEIQYADAVADKAVT 256 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMG----EGRNLKTPLTVVSFYLSHQVYRGLKRGRV 270 ++ +++ HPE + A +G + F + G Sbjct: 257 SMEAIMQNHPEGIAIIACNNDDMAIAAARAAKGNEAYKNTIFMGFDGIKSACEAILDGTE 316 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 M+ + + G +V + +L G + + ++ + ++T NA + Sbjct: 317 SMSVAQEAYDMGYKSVAATVAKLNGTELPEFINSGVSIITKDNAQK 362 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 98/254 (38%), Gaps = 19/254 (7%) Query: 74 GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS---TTSFPDLQKQVASLPVIEL 130 V LK A +L Q QI+Q + G +++ + T S + A +PVI Sbjct: 56 NVTLKFASANDNDRLQKQ--QIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILF 113 Query: 131 VNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRA 190 D+ + + +G ++ GY+ G ++ Q GK N+ + G + + E GF Sbjct: 114 DRKTDSKKYTAFIGADNYEAGYEIGNFIGQQLDGKG-NIAEICGLQASSPAIERNRGFMD 172 Query: 191 AIAGS-PVRIVDIALGDNDIEIQRNLLQEML-ERHPEIDVVAGTAIAAEAAMGEGRNLKT 248 A+ ++++ GD E + +L + I V A A+G +++K Sbjct: 173 ALKDYSGIKVIARKHGDWVKESGVMAMDSVLSQAKEPIQYVF--AQNDRMALGALQSIKK 230 Query: 249 P----LTVVSFYLSH---QVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDN 301 + +V ++ G + + G+ ++ A+ L+ + + Sbjct: 231 HKVKGIRIVGIDALPVPGGGMENVRDGNLEASYIYPTR--GDSVMQLALNILEKKPYKRD 288 Query: 302 VSPPILVLTPKNAD 315 ++T NA+ Sbjct: 289 NYLKGALVTKANAN 302 >UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSM5_DYAFD Length = 904 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 57/288 (19%), Positives = 106/288 (36%), Gaps = 20/288 (6%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEA-ARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 K + A+ + + D + ++ GMQ A L +A S A Q QI++ Sbjct: 20 KQEDAYVIGFSQCTGDDEWRRAMLDGMQRELAFHNNTKLIFRDAHANS--AVQVKQIEEL 77 Query: 99 KQWGAEAILLGS--STTSFPDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPG 155 + G +++ S P ++K +PV+ + +P + VG +Q+G G Sbjct: 78 LRNGIHLLIVSPNESDPLTPVIEKAYKQGVPVVVVDRRTSSPYYTAYVGGDNYQVGKTVG 137 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRN 214 Y G ++ + G + + + G A+A P +R V G +I ++ Sbjct: 138 EYAAALLGGNG-KMIEITGLPRSSPASDRHRGLVDALATRPSIRRVATLNGQWQKDIAKS 196 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQV---YRGLK 266 L+++L R P++D++ A AMG + V+ + + Sbjct: 197 ELRKVLPRFPDLDLIF--AQNEVMAMGAREVCNDIFPDRKIRVIGVDGLPGQFGDIQMVY 254 Query: 267 RGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 G + A GE A A+ LQ Q ++ N Sbjct: 255 DGHITATALYPTG--GEEAARVAMNILQKQPYQKENLLQTAIIDSSNV 300 >UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional regulator n=7 Tax=Burkholderia RepID=B2SY92_BURPP Length = 317 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 114/276 (41%), Gaps = 10/276 (3%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 K+ + L + Y++++ + +AA G + V +A + ++ Q + ++ Q + Sbjct: 42 KIGMTFQELNNPYFVTMQKALNDAAASIGATVVVTDA--HHDVSKQVSDVEDMLQKKIDI 99 Query: 106 ILLGSSTTSF--PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAH 163 +L+ + ++ + + V+ V+A V S VG + G YL + Sbjct: 100 LLVNPTDSTGIQSAVTSAKKAGVVVVAVDANANGPVDSFVGSKNYDAGEMACEYLAKSIG 159 Query: 164 GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLER 222 G V ++ G E V G +AA+A +P V++VD G + ++ + M++ Sbjct: 160 GSG-EVAILDGIP-VVPILERVRGCKAALAKAPGVKLVDTQNGKQERATALSVTENMIQA 217 Query: 223 HPEIDVVAG-TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKR--GRVIMAASDQMV 279 HP + V + A+ + + + S + + +++ + + ++ Sbjct: 218 HPNLKGVFSVNDGGSMGALSAIESSGKDIKLTSVDGAPEAIAAIQKPNSKFVETSAQFPA 277 Query: 280 WQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 Q +A+ A+ + G +V + + ++ NA Sbjct: 278 DQVRIALGIALAKKWGANVPKTIPVDVKMIDKSNAK 313 >UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1 Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ Length = 511 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 12/280 (4%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 + + + S + W + ++++ A Y Q QID G Sbjct: 23 KRYTIGVSQCS--EDIWREKQNAELRMGAYFHDNVELKFAAAYDSDERQVQQIDSLMNEG 80 Query: 103 AEAILLGSSTTSF--PDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 + +++ + + P + + +PVI + + + + ++MG+ G Y+V Sbjct: 81 IDLLIVAPNQVNTISPAIDRAYDKGIPVIVFERKTGSQKYTAFISADNYEMGHVMGEYIV 140 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQE 218 HGK NVL + G + + E GF AI P +++V GD +E Sbjct: 141 SRLHGKG-NVLEIKGLAGSSPAIERHNGFMDAIKDEPGIKVVGSLQGDWTEATACQKSKE 199 Query: 219 MLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSH---QVYRGLKRGRVIMAAS 275 L + + V AMG L + ++ + + Sbjct: 200 WLAANEGVPVDLVFGANDRTAMGAREALGEKPLYCGIDGLPGKNGGIQLVRDSLLDASFI 259 Query: 276 DQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 G+ ++ AIR L+GQ ++T NA Sbjct: 260 YPTH--GDQLMDLAIRILEGQPYEKETMLMSALVTHDNAK 297 >UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2G7_9CLOT Length = 356 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 122/336 (36%), Gaps = 23/336 (6%) Query: 5 LFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNY 64 + L++ ++ A S+ + + S K + A S+ ++ Sbjct: 25 ILLVIVSMLVCACSSGGGKADTEKTEKKTEDSGN---KDKITVGATLSDFTISFQAAMYN 81 Query: 65 GMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS-STTSFPDLQKQ-V 122 + +A + Y +++ + G S A Q QI+ G +AIL+ + S P L+K Sbjct: 82 ELLDAQKEYD-NIEFILQDGASDSALQVNQIETFITQGVDAILINAVSDAVEPSLKKAME 140 Query: 123 ASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYL---VQWAHGKPLNVLLMPGPDNA 178 A +PV + +I D +G G Q L ++ N+L + G A Sbjct: 141 AGIPVFAVNRSITDENAYSYFIGANDTLSGEQMANCLLDMIEKDQMDSCNILYIQGVIGA 200 Query: 179 GGSKEMVEGFRAAIAGSP----VRIVDIALGDNDIEIQRNLLQEMLERHP--EIDVVAG- 231 GF + + V I++ +D E + +Q ML ++P EID + Sbjct: 201 TYQTLRQGGFDSIMDEKGYDMGVNILERIPCKHDKETVISSIQNMLNKYPAGEIDAIVCE 260 Query: 232 ---TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 A+ A A+ + +V + +V+ +K G++ Q E+ ++ Sbjct: 261 GPDDAVGALQAVQSAGRTELVGKIVGMDMPTEVWDAIKAGKIYGTVLQDPAEQCEVGIKT 320 Query: 289 AIRQLQGQS---VSDNVSPPILVLTPKNADREHIRR 321 G + + ++T +N + Sbjct: 321 IETYFFGDKDSLKEKFIETDLPMVTSENVNDVTPSW 356 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 54/330 (16%), Positives = 120/330 (36%), Gaps = 17/330 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M +F L A + + + T Q++ + K+ A Y + ++++ Sbjct: 1 MEKPKSFAYIIFCLTICLAF-AIGSNYLINTTTQSNMIYNSTEPRKIGATYMTYNNTFYS 59 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK 120 +N + + +G L L++ L Q+ QI + +AI++ + Sbjct: 60 VINEEISRILKEHGDQLIALDSA--MSLKKQKEQIHYLIEQQVDAIVIAPVDYEGLEDSL 117 Query: 121 QVA---SLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 + A +PVI + + + + + G Q + +++ N++L+ Sbjct: 118 KEAYRNRIPVIVVDTEVKHNKNITYSIVSDNYDAGVQCAKDMMRKLDH--ANIVLLQHST 175 Query: 177 NAGGSKEMVEGFRAAIA-GSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG---- 231 G ++GF I ++V D +E+ ++ +E E DVV Sbjct: 176 TRSG-YLRIKGFEDTIQSNENYKVVKRMECDGQLEVAMPKMESFIEEGIEFDVVMCLNDP 234 Query: 232 TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 +A+ A AA+ LK V + + + G++ + G+ A E + Sbjct: 235 SAMGAMAALSSNNILKDK-YVYGIDGTPEAKEMVVEGKMAATVAQSPKTFGKKAGEVIYK 293 Query: 292 QLQGQSVS-DNVSPPILVLTPKNADREHIR 320 +++ N P+ ++T +N Sbjct: 294 LFSQETIKNKNEMSPVQIITKENVQDYSTE 323 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P38683 Periplasmic protein torT n=101 Tax=Bacteria RepI... 327 3e-88 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 303 5e-81 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 287 3e-76 UniRef50_UPI000197BE16 TMAO reductase system periplasmic protein... 278 2e-73 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 275 2e-72 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 272 2e-71 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 270 4e-71 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 270 7e-71 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 269 1e-70 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 268 2e-70 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 268 3e-70 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 265 2e-69 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 260 5e-68 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 258 2e-67 UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerot... 257 4e-67 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 257 5e-67 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 257 5e-67 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 255 1e-66 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 253 5e-66 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 253 9e-66 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 252 2e-65 UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional... 251 2e-65 UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostri... 251 3e-65 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 250 5e-65 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 250 6e-65 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 248 2e-64 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 248 2e-64 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 246 6e-64 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 245 1e-63 UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional... 245 1e-63 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 244 3e-63 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 244 3e-63 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 243 7e-63 UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional... 241 2e-62 UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminoc... 241 3e-62 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 240 4e-62 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 240 4e-62 UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Ta... 240 6e-62 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 240 7e-62 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 239 1e-61 UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T... 239 1e-61 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 238 2e-61 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 238 2e-61 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 237 4e-61 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 236 6e-61 UniRef50_Q1GM88 Periplasmic binding protein/LacI transcriptional... 236 8e-61 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 235 2e-60 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 235 2e-60 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 235 2e-60 UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional... 235 2e-60 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 234 3e-60 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 234 4e-60 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 233 5e-60 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 233 6e-60 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 233 1e-59 UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional... 231 3e-59 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 231 3e-59 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 231 3e-59 UniRef50_A4IT20 ABC transporter sugar-binding protein n=9 Tax=Ba... 230 5e-59 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 230 6e-59 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 230 7e-59 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 230 7e-59 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 230 8e-59 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 229 1e-58 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 229 1e-58 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 229 1e-58 UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 228 2e-58 UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Ga... 228 2e-58 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 228 2e-58 UniRef50_C2KRR4 Ribose ABC superfamily ATP binding cassette tran... 228 2e-58 UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact... 228 3e-58 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 228 3e-58 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 227 5e-58 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 227 5e-58 UniRef50_C6CXU6 Periplasmic binding protein/LacI transcriptional... 226 6e-58 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 226 8e-58 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 226 8e-58 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 226 9e-58 UniRef50_A3JZ93 Periplasmic sensory protein associated with the ... 226 1e-57 UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional... 225 1e-57 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 225 2e-57 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 225 2e-57 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 225 2e-57 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 225 2e-57 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 225 2e-57 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 224 4e-57 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 223 5e-57 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 223 5e-57 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 223 6e-57 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 223 1e-56 UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 222 1e-56 UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic com... 222 2e-56 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 221 2e-56 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 221 3e-56 UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding prot... 221 3e-56 UniRef50_C6J068 ABC-type sugar transport system n=1 Tax=Paenibac... 221 4e-56 UniRef50_A9KMR5 Putative solute-binding component of ABC transpo... 220 4e-56 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 220 4e-56 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 220 6e-56 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 220 6e-56 UniRef50_C8STD2 Monosaccharide-transporting ATPase n=1 Tax=Mesor... 220 9e-56 UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HL... 219 1e-55 UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional... 219 1e-55 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 219 1e-55 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 219 1e-55 UniRef50_C0Z4C9 Putative ABC transporter substrate binding prote... 218 2e-55 UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei... 218 2e-55 UniRef50_Q9K692 Sugar ABC transporter (Sugar-binding protein) n=... 218 2e-55 UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 218 2e-55 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 218 3e-55 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 218 3e-55 UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional... 218 3e-55 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 218 3e-55 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 218 4e-55 UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str... 218 4e-55 UniRef50_D1PLY2 Putative periplasmic sugar-binding protein n=1 T... 217 4e-55 UniRef50_B8IKX9 Periplasmic binding protein/LacI transcriptional... 217 4e-55 UniRef50_A1STY3 Transcriptional regulator, periplasmic binding p... 217 5e-55 UniRef50_A9KIC5 Periplasmic binding protein/LacI transcriptional... 217 5e-55 UniRef50_Q221W3 Periplasmic binding protein/LacI transcriptional... 217 5e-55 UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia... 216 6e-55 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 216 7e-55 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 216 7e-55 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 216 7e-55 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 216 8e-55 UniRef50_B6QZG8 TMAO reductase system periplasmic protein TorT n... 216 9e-55 UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional... 216 9e-55 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 216 9e-55 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 216 1e-54 UniRef50_C5EI71 Predicted protein n=1 Tax=Clostridiales bacteriu... 216 1e-54 UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional... 215 1e-54 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 215 1e-54 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 215 1e-54 UniRef50_A6BDJ9 Putative uncharacterized protein n=1 Tax=Dorea l... 215 2e-54 UniRef50_B9L4R0 Periplasmic binding protein/LacI transcriptional... 215 2e-54 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 215 2e-54 UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding... 214 2e-54 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 214 3e-54 UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_... 214 3e-54 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 214 3e-54 UniRef50_A4XG54 Periplasmic binding protein/LacI transcriptional... 214 3e-54 UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC2... 214 4e-54 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 214 5e-54 UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional... 213 5e-54 UniRef50_C6CWF6 Periplasmic binding protein/LacI transcriptional... 213 6e-54 UniRef50_A9KK42 Periplasmic binding protein/LacI transcriptional... 213 7e-54 UniRef50_D2BFJ9 Sugar ABC transporter n=1 Tax=Streptosporangium ... 213 7e-54 UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot... 213 9e-54 UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Di... 213 9e-54 UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB... 213 1e-53 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 213 1e-53 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 212 1e-53 UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminoc... 212 1e-53 UniRef50_Q2YI92 Putative two-component system sensor histidine k... 212 2e-53 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 211 2e-53 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 211 3e-53 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 211 3e-53 UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu... 211 4e-53 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 211 4e-53 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 211 4e-53 UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clo... 210 5e-53 UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 ... 210 7e-53 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 209 9e-53 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 209 1e-52 UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri... 209 1e-52 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 209 1e-52 UniRef50_UPI0001973330 periplasmic binding protein/LacI transcri... 209 1e-52 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 209 2e-52 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 208 2e-52 UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 208 2e-52 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 208 3e-52 UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia... 208 3e-52 UniRef50_Q1AUT8 Periplasmic binding protein/LacI transcriptional... 208 3e-52 UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional... 208 3e-52 UniRef50_B7DPH3 Periplasmic binding protein/LacI transcriptional... 208 3e-52 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 208 3e-52 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 207 4e-52 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 207 4e-52 UniRef50_Q484F8 Periplasmic protein TorT n=2 Tax=Alteromonadales... 207 4e-52 UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepI... 207 6e-52 UniRef50_Q7MEN8 ABC-type sugar transport system, periplasmic com... 207 6e-52 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 207 6e-52 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 206 7e-52 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 206 7e-52 UniRef50_A3DCF2 Sugar ABC transporter (Sugar-binding protein) n=... 206 8e-52 UniRef50_C6PMK8 Periplasmic binding protein/LacI transcriptional... 206 1e-51 UniRef50_C8XH32 Periplasmic binding protein/LacI transcriptional... 206 1e-51 UniRef50_A8F3L8 Periplasmic binding protein/LacI transcriptional... 206 1e-51 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 206 1e-51 UniRef50_A6FN89 Periplasmic binding protein/LacI transcriptional... 205 2e-51 UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional... 205 2e-51 UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional... 204 3e-51 UniRef50_B5ZRZ8 Periplasmic binding protein/LacI transcriptional... 204 3e-51 UniRef50_Q89VC4 ABC transporter sugar-binding protein n=3 Tax=Br... 204 4e-51 UniRef50_C0BEZ3 Putative uncharacterized protein n=1 Tax=Coproco... 204 5e-51 UniRef50_B0NFD0 Putative uncharacterized protein n=1 Tax=Clostri... 204 5e-51 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 203 5e-51 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 203 7e-51 UniRef50_C6BZX1 Putative D-ribose-binding periplasmic protein n=... 203 7e-51 UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr... 203 7e-51 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 203 7e-51 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 203 7e-51 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 203 8e-51 UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional... 203 9e-51 UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h... 203 9e-51 UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional... 203 1e-50 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 202 1e-50 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 202 2e-50 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 202 2e-50 UniRef50_A7NNR8 Anti-sigma-factor antagonist n=2 Tax=Roseiflexus... 202 2e-50 UniRef50_C4ZP40 Periplasmic binding protein/LacI transcriptional... 201 2e-50 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 201 2e-50 UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales b... 201 3e-50 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 201 3e-50 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 201 3e-50 UniRef50_Q5L7F9 Sensor protein n=5 Tax=Bacteroides RepID=Q5L7F9_... 201 3e-50 UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi... 201 3e-50 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 201 3e-50 UniRef50_C3M5M3 Periplasmic protein TorT n=33 Tax=Vibrio RepID=C... 201 3e-50 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 201 4e-50 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 201 4e-50 UniRef50_C5RJT9 Periplasmic binding protein/LacI transcriptional... 201 4e-50 UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curviba... 201 4e-50 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 200 5e-50 UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding... 200 5e-50 UniRef50_UPI0001B55A58 periplasmic binding protein/LacI transcri... 200 5e-50 UniRef50_C6CRC9 Sugar ABC transporter (Sugar-binding protein) n=... 200 6e-50 UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ... 200 6e-50 UniRef50_D2C7R7 Periplasmic binding protein/LacI transcriptional... 200 7e-50 UniRef50_B0MFL8 Putative uncharacterized protein n=1 Tax=Anaeros... 200 7e-50 UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional... 199 1e-49 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 199 1e-49 UniRef50_C9NQR7 Periplasmic binding protein/LacI transcriptional... 199 1e-49 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 199 1e-49 UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional... 199 1e-49 UniRef50_C5V4K8 Periplasmic binding protein/LacI transcriptional... 199 1e-49 UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostri... 199 1e-49 UniRef50_A8RG89 Putative uncharacterized protein n=1 Tax=Clostri... 198 2e-49 UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerot... 198 2e-49 UniRef50_B8I3I9 Periplasmic binding protein/LacI transcriptional... 198 3e-49 UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotro... 198 3e-49 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 198 3e-49 UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel... 197 4e-49 UniRef50_A9D050 RbsB protein n=2 Tax=Alphaproteobacteria RepID=A... 197 5e-49 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 197 5e-49 UniRef50_B9K0T2 ABC transporter substrate binding protein (Ribos... 197 5e-49 UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostrid... 197 5e-49 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 197 5e-49 Sequences not found previously or not previously below threshold: >UniRef50_P38683 Periplasmic protein torT n=101 Tax=Bacteria RepID=TORT_ECOLI Length = 342 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 342/342 (100%), Positives = 342/342 (100%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL Sbjct: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK 120 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK Sbjct: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK 120 Query: 121 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG 180 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG Sbjct: 121 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG 180 Query: 181 SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM Sbjct: 181 SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 Query: 241 GEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD 300 GEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD Sbjct: 241 GEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD 300 Query: 301 NVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK 342 NVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK Sbjct: 301 NVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK 342 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 65/317 (20%), Positives = 144/317 (45%), Gaps = 13/317 (4%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQA-STPLKAKRAWKLCALYPSLKDSYWL 60 R+L LLL++FM+ S + +++ V+ ++ K K+ +L + +++ Sbjct: 6 RLLSVLLLAIFMITGCSIEGQNNKEESKESGVEEKASETKTDGDMKIGVSLSTLNNPFFV 65 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 S+ G++EAA + V+ + +A + +TQ Q++ G + I++ ++ Sbjct: 66 SIREGVEEAAGKENVETVITDAQ--NDSSTQNNQVEDLITQGVDLIVINPVDSTAIATSV 123 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + A++PVI + D ++ S + + G G Y+++ V+ + G Sbjct: 124 EKANEANIPVICVDRGSDQGELVSFIASNNVEGGKLAGEYILEKVGEN-AEVIQLEGIPG 182 Query: 178 AGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 A ++E EGF A + ++ + D +++ +L+ HP++ V E Sbjct: 183 ASSTRERGEGFEEA-TNGKINLLASQTANFDRAEGMTVMENLLQAHPDVKAVFC--QNDE 239 Query: 238 AAMGEGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 A+G +K +T+V F + + ++ G + + + G+LA+E AI+ L+ Sbjct: 240 MALGASEAIKASGKDVTIVGFDGNEDAIKAVEEGNLSATVAQKPKEMGKLAIETAIKYLK 299 Query: 295 GQSVSDNVSPPILVLTP 311 G+ V + V P+ ++ Sbjct: 300 GEEVEETVDSPLELIKK 316 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 70/319 (21%), Positives = 134/319 (42%), Gaps = 13/319 (4%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ +L + A T ++T + + KL +L + +++ Sbjct: 1 MKRWTAMLAVGVVAAGVLAGCGTSVSTGSQKTNLSNTGTASTKPIKLGFAVSTLNNPFFV 60 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT---SFPD 117 +++ G+QE A++ GV + +L G + ATQ Q++ Q AI+L + + S Sbjct: 61 AMSNGVQEEAKKLGVQVTIL--NGNNDPATQLNQVEDLIQQHVNAIILNPTDSQSLSTAV 118 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 Q A +PVI L ++ V + + G L++ GK V+ + G Sbjct: 119 EQANRAHIPVITLDRSVTKGNVACFIASNSVEAGKMAADELIKALGGKG-QVVELQGVIG 177 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 + +GF I +P +R+V + D N++Q +L+ HP I V A Sbjct: 178 TSAEADREKGFDEEIGKAPGIRVVARQTANFDRSQALNVMQNILQAHPNIQGVF--AQND 235 Query: 237 EAAMGEGRN----LKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 E A+G + K + +V + + +G + + Q V +G L VE A++ Sbjct: 236 EMALGALKAIQEAGKHNIKIVGIDGEKEAVNDVHKGLLYADIAQQPVQEGILGVEYAVKL 295 Query: 293 LQGQSVSDNVSPPILVLTP 311 ++G+ V V+ P+ ++ Sbjct: 296 VEGEKVPKQVNSPLHLVEK 314 >UniRef50_UPI000197BE16 TMAO reductase system periplasmic protein TorT n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BE16 Length = 343 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 247/345 (71%), Positives = 285/345 (82%), Gaps = 5/345 (1%) Query: 1 MRVLLFLLL---SLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDS 57 MRVL+ LL SL L +L++W D HF Q P+ A +AWKLCALYPSLKDS Sbjct: 1 MRVLILLLFTFHSLLSLATAHNSSLIQWSDTLHFDRQPHDPVTATKAWKLCALYPSLKDS 60 Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD 117 YWLS+NYGMQ+AA+ YGV+L VLEAGGY+QLATQQ QI QC+QWGA+AILLGSSTT+FP+ Sbjct: 61 YWLSINYGMQKAAKHYGVNLNVLEAGGYNQLATQQKQITQCQQWGADAILLGSSTTTFPN 120 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 L + V + PVIE++NA +K+RVGVPWFQMGYQPGRYLVQW+ GKPL VLLMPGP N Sbjct: 121 LSQLVENTPVIEVINATHDKTIKTRVGVPWFQMGYQPGRYLVQWSQGKPLKVLLMPGPLN 180 Query: 178 AGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 AGGS EM +GFR AIAGS V+IVD+A GDND+E+QRNLL EMLER+P+ DVV GTAIAAE Sbjct: 181 AGGSHEMEQGFREAIAGSQVQIVDVAQGDNDLEVQRNLLHEMLERNPDTDVVVGTAIAAE 240 Query: 238 AAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQS 297 AAMGEGRNL PL +VSFYLSHQVYRGLKRGR+IMAASDQMVWQGEL +EQAI+ LQ Q Sbjct: 241 AAMGEGRNLTKPLNIVSFYLSHQVYRGLKRGRIIMAASDQMVWQGELVIEQAIKVLQKQP 300 Query: 298 VSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK 342 V +N+SPPILVLT +NAD EH+R SLSPGGFRPVY Q+TSAAKK Sbjct: 301 VPNNISPPILVLTQQNADSEHLRNSLSPGGFRPVY--QYTSAAKK 343 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 136/320 (42%), Gaps = 23/320 (7%) Query: 1 MRVLL--FLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSY 58 M+ + L LSLF+L A S + + K+ + + +L + + Sbjct: 1 MKKAVSVILTLSLFLLTACSL---------EPPQWAKPSNSGNKKEFTIGLSVSTLNNPF 51 Query: 59 WLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--- 115 ++SL G+++ A++ G+ + +++A + + Q + ++ Q G +A+L+ + +S Sbjct: 52 FVSLKKGIEKEAKKRGMKVIIVDAQ--NDSSKQTSDVEDLIQQGVDALLINPTDSSAIST 109 Query: 116 PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 +PV+ + + + +V++ V + G ++ GK V + G Sbjct: 110 AVESANAVGVPVVTIDRSAEQGKVETLVASDNVKGGEMAAAFIADKL-GKGAKVAELEGV 168 Query: 176 DNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 A ++E GF IA +++V D D +++ +L+ HP+I V A Sbjct: 169 PGASATRERGSGFHN-IADQKLQVVTKQSADFDRTKGLTVMENLLQGHPDIQAVF--AHN 225 Query: 236 AEAAMGEGRNL---KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 E A+G + + V+ F + +K ++ + Q G+LA E A Sbjct: 226 DEMALGALEAINSSGKDILVIGFDGNKDALASIKDRKLSATVAQQPELIGKLATEAADDI 285 Query: 293 LQGQSVSDNVSPPILVLTPK 312 L G+ V +S P+ + T K Sbjct: 286 LHGKKVQKTISAPLKLETQK 305 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 54/334 (16%), Positives = 123/334 (36%), Gaps = 15/334 (4%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ LL L+ + + + A K+ + + +W Sbjct: 1 MKKLLLFLVVFAAVLSCGKSEDKKDAGAGKSANSG-------DKIKIELVSKGYQHEFWR 53 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDL-- 118 S+ G ++A GV++ + +++ Q ++ A+ + + + Sbjct: 54 SVEAGAKKAGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALAVVA 113 Query: 119 -QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + A +PV+ + + S + G G L + +GK V ++ Sbjct: 114 KKAMDAKIPVVTFDSNVKGDITSSFIATDNKVAGAMAGEQLAKLINGKG-KVAIVSHNPG 172 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 + E GFR A+A P ++I++ D D + +++ +P+I + GT + Sbjct: 173 TTTAIEREAGFREALAKYPDIKILNTQFSDGDKSKALAITLDIINANPDIAGIYGTNEPS 232 Query: 237 EAAMG---EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL 293 + E + L + +V S + + L++G + G V+Q + Sbjct: 233 IFGIAKGVEEKGLTGKVVLVGIDSSEDLAKFLEKGVISGLVIQDPYNMGYQTVQQLYKLS 292 Query: 294 QGQSVSDNVSPPILVLTPKNADREHIRRSLSPGG 327 +G+ V + +++T +N + I + + P G Sbjct: 293 KGEKVEKRIDTGAILVTKENINNPDITKKMFPFG 326 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 126/320 (39%), Gaps = 14/320 (4%) Query: 8 LLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQ 67 LL + + + ++ + + +L YW ++ G Sbjct: 6 LLGIILTLGMLSCVFGGCGNSADQGKGGEKGKGGN----VAVVLKALNSDYWKTVQAGAN 61 Query: 68 EAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDL---QKQVAS 124 +AA+ GV ++VL + + Q + I+ G +A+++ + + + Sbjct: 62 DAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVAPLQPNAAITTFDKAEKEK 121 Query: 125 LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEM 184 +PV+ + + + KS VG G G Y+ + K +++ G E Sbjct: 122 IPVVLIDTDANWDKKKSFVGTGNIAAGKLGGEYISKKLK-KGDEAIIIRGVPGDRTQDER 180 Query: 185 VEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEG- 243 +G + A+ + +++V+I +++ E ++++ +L+ HP I V T E A+G Sbjct: 181 TQGAQKALEAAGIKVVEIQPANSEREKAISVMENLLQTHPNIKGVFCT--NDEMALGAVK 238 Query: 244 ---RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD 300 + K + + S + +K G + + G+ VE A++ L+G+ V Sbjct: 239 ALQQAGKKNIISIGVDGSPDALKSIKEGGLTGTVAQNSYDIGKKGVETAVKVLRGEKVET 298 Query: 301 NVSPPILVLTPKNADREHIR 320 + ++ +N + + + Sbjct: 299 RIDTGTTLVDKQNVNEQEAK 318 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 270 bits (690), Expect = 7e-71, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 136/320 (42%), Gaps = 24/320 (7%) Query: 1 MRVLLFL--LLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSY 58 M+ L + L+L L A S + + K+ +LK+ + Sbjct: 1 MKKTLTVFTALALLFLSACSLEPPEWAKPNKEKGT----------DIKIGLSVSTLKNPF 50 Query: 59 WLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDL 118 ++SL G+ + A++ G+++ V++A A Q ++ Q G +A+L+ + +S Sbjct: 51 FVSLKNGVVKEAKKQGIEVIVVDAQ--DDSAKQTNDVEDLLQQGVDALLINPADSSAIST 108 Query: 119 QKQVA---SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 Q A +PV+ L + + +V++ V + G ++V+ GK V + G Sbjct: 109 AVQSANSLGIPVVTLDRSAENGKVETLVASDNVKGGQMAADFIVEQL-GKGAKVAELEGV 167 Query: 176 DNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 A ++E GF A + ++ D D N+++ +L+ +P+I V A Sbjct: 168 PGASATRERGSGFHKT-ADDKLNVIAKQTADFDRTKGLNVMENLLQGNPDIQAVF--AHN 224 Query: 236 AEAAMGEGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 E A+G ++ + VV F + + ++ G + + Q G+LAV+ A Sbjct: 225 DEMALGAIEAIRSSGKEILVVGFDGNEDAVKAVQAGDMSATIAQQPELIGKLAVQAARDI 284 Query: 293 LQGQSVSDNVSPPILVLTPK 312 L G+ V + P+ + T K Sbjct: 285 LNGKKVEKTIPAPLKLETKK 304 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 137/322 (42%), Gaps = 17/322 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 + V + +LF L A L D+ KA + K+ +L + +++ Sbjct: 9 LMVAVVATAALFTLTACGGTGLSSKSDS-----NTKVTKKAPKDLKVGVSLSTLSNPFFV 63 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 S+ G+Q+ A++ +++V +A + A Q + I+ Q + +++ +S Sbjct: 64 SVRNGIQDLAKKNKTNVQVSDAQ--NDTAKQNSNIEDLIQKKVDVLIINPVDSSAITPAV 121 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 A +PVI + + D +V + V + G +Y+++ GK + + G Sbjct: 122 KDANDAGIPVITVDRSSDGGKVLTLVASNSTKGGQMAAKYMIEKL-GKDAKIAELQGIPG 180 Query: 178 AGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 A ++E +GF A + IV D + + +L+ + +I + + E Sbjct: 181 ASATRERGKGF-DGAAKGKLDIVSKQTAGFDRAKGLTVTENILQGNGDIVGIF--SQNDE 237 Query: 238 AAMGEGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 A+G + +K +T+V F + +K G + + + G LA++ A Sbjct: 238 MALGAVQAVKAAGKKITIVGFDGEADGIKAVKAGDMAATVAQKPEEMGRLALQAAYDHFN 297 Query: 295 GQSVSDNVSPPILVLTPKNADR 316 G++V NV P+ ++T ++A++ Sbjct: 298 GKTVKKNVESPLSLVTTEDANK 319 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 64/330 (19%), Positives = 125/330 (37%), Gaps = 16/330 (4%) Query: 1 MRVLLFLLLSLFMLPA----FSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKD 56 M+ L L ++ A FS + + + T ++S +++ + + + D Sbjct: 1 MKRSSIFLTILVLVLAISLVFSGCSSKQQTPSSSSTQESSQTASSEKKYNIVLITMDSMD 60 Query: 57 SYWLSLNYGMQEAARRYG-VDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST--T 113 +WL++ G + A+ G V L + Q ++ A+AIL+ + Sbjct: 61 EHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMEDAINQKADAILIAPTDQTA 120 Query: 114 SFPDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLM 172 P ++K A +PVI + + + + S V + L + GK + ++ Sbjct: 121 LTPVVEKAFDAGIPVILIDSPVKTDKYVSFVATDNIKAAEMAADKLGELLGGKG-KIAII 179 Query: 173 PGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA 230 +G + GF+ + ++I+ D N ++L HP++ Sbjct: 180 SAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYSMGDKNRALNQALDILTAHPDLAGFY 239 Query: 231 GT----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 GT I A+ ++L + VV F +S +K + + G V Sbjct: 240 GTNEGSTIGIAMAIK-QKDLAGKVKVVGFDISQATINAIKENYIQASMVQNPYMMGYKGV 298 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 E A+ +LQG+ V V + V+T N D Sbjct: 299 EIAVDKLQGKEVPKRVDTGVTVMTKDNVDE 328 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 64/337 (18%), Positives = 114/337 (33%), Gaps = 21/337 (6%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 + F L+S+ L + A ++ + +W Sbjct: 108 LSRRSFCLVSVATLLVCAGCQPPADTSANT----------GEKELHFAVIPKGTTHIFWQ 157 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 S+ +G ++A G + + Q + + ILL P Sbjct: 158 SVKHGAEQAGEEIGAKITFRGPSKENDRDEQINVVQGFLNARVDGILLAPLDADALVRPV 217 Query: 118 LQKQVASLPVIELVNAIDAP--QVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 + A +PV+ + ++ S V F+ G G + K +V+L+ Sbjct: 218 KEASRAGVPVVIFDSGLNTDPGDFVSYVATDNFEGGKLAGEAMANALGEKGGDVILLRYE 277 Query: 176 DNAGGSKEMVEGFRAAIAGS-PVRIVDI-ALGDNDIEIQRNLLQEMLERHPE-IDVVAGT 232 + + + EGF +IA +R++ E + Q +L R + D + Sbjct: 278 QGSESTHQREEGFLYSIAEYSNIRVLSSDQYAGTTTESAIDKAQALLNRFGDEADGICTV 337 Query: 233 A-IAAEAAMGEGRNLK--TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 AE A+ R K + +V+F S + L G V V G AV+ Sbjct: 338 CEPTAEGALRALRERKLAGKVKLVTFDSSDSLRESLSAGEVNAIVLQDPVAMGYQAVKTM 397 Query: 290 IRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPG 326 L+G++ + + V T KN D E+I R L P Sbjct: 398 AAHLRGETPEQFIDTGVFVATAKNQDDENIARLLRPA 434 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 124/324 (38%), Gaps = 12/324 (3%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQ-ASTPLKAKRAWKLCALYPSLKDSYWL 60 + L F ++ + +A +L + + K + + + Y++ Sbjct: 5 KKLTFAFVATLAVSTLTACSLYTGIPGRDGKEKVEEVTHKKPNELNIGVSISTTNNPYFV 64 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--PDL 118 S+N ++ A+ L V +A + ATQ + +AIL+ + P + Sbjct: 65 SMNNAIKSMAKEKNTKLTVSDAQ--NDSATQLNNVQNFISQNVDAILINPVDSDAIVPAI 122 Query: 119 QKQV-ASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + A +PVI + + V + V G + V+ GK + VL + G Sbjct: 123 KAANNAHIPVIAMDRGSNGGTVLTTVASDNVAAGKMAAQA-VEKLVGKNVKVLELSGTPG 181 Query: 178 AGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 A + + +GF + + I+ + D N Q ML+ H ++ + A E Sbjct: 182 ASATIDRGKGFNSEAKTLGLNILSSQSANFDRTTGLNTTQNMLQSHKDVQAIF--AQNDE 239 Query: 238 AAMGEGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 A+G + ++ + + + + +K G + + Q GE+A++ Q Sbjct: 240 MALGAAKAVQATGQKIAIFGIDGESETHDAIKAGTMTATIAQQPAKIGEMALQATYDYYQ 299 Query: 295 GQSVSDNVSPPILVLTPKNADREH 318 G+ ++ ++ PI ++ N D+ Sbjct: 300 GKKIAHMINSPIYLVDKDNVDQHQ 323 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 260 bits (666), Expect = 5e-68, Method: Composition-based stats. Identities = 62/335 (18%), Positives = 136/335 (40%), Gaps = 24/335 (7%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + +L +LLS ++ + + K + + SL +++++ Sbjct: 5 KKILAVLLSTLLIGSAILTGCGSKESSVDKK------DKDPKEVTVGLSLSSLSNAFFIG 58 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDL 118 + G+++ G L A G +A Q + I+ + +++ + Sbjct: 59 MEKGVKDKTSEIGCKLIETNANG--DIAKQLSDIEDLITKKVDILIVNALDADAIVPAVK 116 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKP---LNVLLMPGP 175 + + A++P+I L ++ + + + +MG Q +++ K NV+ + G Sbjct: 117 KAKEANIPIIFLDRGANSEDMTTFLETDNVKMGEQAAELILKALKDKGLNGGNVVEIEGL 176 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG--- 231 +++ +GF + V+IV GD + E N++Q +L+ +P+ID V G Sbjct: 177 QGTSAARDRGKGFHNVMDKHKEVKIVAKQAGDFNQEKSMNVMQNILQANPKIDAVFGHND 236 Query: 232 -TAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELA 285 + AE A+ +K + VV +Q +K+G + ++ S + G A Sbjct: 237 DCTVGAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIESVKKGNIDVSISQDPIGMGVQA 296 Query: 286 VEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 VE ++ ++G+ V ++ +T NA E Sbjct: 297 VEVGLKAIKGEQVEKHIYTKFFPITKDNATDESNW 331 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 65/331 (19%), Positives = 129/331 (38%), Gaps = 18/331 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQ------HFTVQASTPLKAKRAWKLCALYPSL 54 M+ L+ +L++ ML F+A + ++ T T A + + SL Sbjct: 4 MKRLVAMLVAAIMLITFAACSSDTSKNSSEESKSSDTTKVTETSKPADKKIVVGMTLYSL 63 Query: 55 KDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS 114 K+ + + L+ ++ A GV+LK+ + G TQ Q++ G +AI+L Sbjct: 64 KNEFTVRLSNAAKKKAAELGVELKIYD--GNYDPNTQINQVETMISDGVDAIILNPQDAK 121 Query: 115 FPDLQKQVA---SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLL 171 + A ++PVI + +D+ ++ S VG G + + GK N+++ Sbjct: 122 ACAVAVDKAAAANIPVIGVNTRVDSEKLTSYVGSKDVYAGELEMQAIADKIGGKG-NIVI 180 Query: 172 MPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA 230 + GP E EG + + P ++++ + +++ L+ +ID V Sbjct: 181 LDGPLGQSAQLERSEGIQNVLKKYPDIKVLAEKTANWSRSEAMTVMENWLQAFDKIDAVV 240 Query: 231 GTAIAAEAAMGE---GRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVE 287 A E A+G K + + +++G +I QG A+E Sbjct: 241 --AENDEMALGARKAIEAKKLDIPTIGVDGITDALDAVEKGTLIATIFQDGAGQGSKALE 298 Query: 288 QAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 A+ + +G++V +T N Sbjct: 299 IAVAKAKGENVDKEYWIDFEPVTKDNVAEFK 329 >UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PA90_9FIRM Length = 338 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 122/339 (35%), Gaps = 16/339 (4%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPL-----KAKRAWKLCALYPSLKD 56 R+L +L + + + A T S P + S Sbjct: 3 RILSAILSAAMAASLVACGSSQSHSSAPADTPAPSVPAESAADAPDDKLTFGLVVMSTNS 62 Query: 57 SYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF- 115 YWL+L G QEA G +L + + Q + ++ +AILL + Sbjct: 63 DYWLTLKDGAQEAVDAIGGELVFTGPADNNDIQGQVSLMENLINSKVDAILLTPLDSDAL 122 Query: 116 --PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP 173 P + A +PVI + +A++ + S + G L++ G V+++ Sbjct: 123 AAPVEKAMDAGIPVIVIDSAVNTDKYTSFIATDNVAGGRMAMERLIESIGGSG-EVVVVN 181 Query: 174 GPDNAGGSKEMVEGFRAAIAG-SPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT 232 + +G A + ++ D + ++ +P + + T Sbjct: 182 ALAGIPSNDARGQGAEEYAATVDGITVLPQQHCL-DQAEAMTATENVIIGNPNLKGIFAT 240 Query: 233 ----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 A+ A A+ + + +V+F + L+ G + Q G++ +E Sbjct: 241 FNRGALGAAQAI-VSKGKAGEIKMVAFDADADEIKLLEDGTIDALVVQQPYEMGKIGIEY 299 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGG 327 A++ L G+ V V+P +++ T N + E I + L P G Sbjct: 300 AVKALNGEEVPKTVAPEVVIATKDNMNDEAIHKVLYPKG 338 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 56/338 (16%), Positives = 129/338 (38%), Gaps = 30/338 (8%) Query: 4 LLFLLLSLFMLPAFSADNLLRWH----------------DAQHFTVQASTPLKAKRAWKL 47 +L L ++ ++ S+ + D A + + + + + Sbjct: 9 VLALAMACSLMAGCSSGSGETTAAATTEAAKEESKEEAKDTSAEAENAGSEEGSGKKYVI 68 Query: 48 CALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL 107 + + +++ + G+Q+AA +G++L + +A Q ++ +AI+ Sbjct: 69 GLAMNTQTNPFFVDVKDGVQKAADEHGIELYITDAQ--DDPTIQMKDVENLITKKPDAII 126 Query: 108 L--GSSTTSFPDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHG 164 + S ++ A +PV + + +V S +G + G G+YLV G Sbjct: 127 IDTCDSDAIVSSIEACNEAGIPVFTMDREANGGEVISHIGYDAIKSGRMAGQYLVDTLGG 186 Query: 165 KPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERH 223 K ++ + G ++ +GF + +P + IV + D D ++++ +L+ + Sbjct: 187 KG-KIVEIQGIMGTNVAQNRSQGFNEVMKDNPDMEIVACQVADFDRAKGMSVMENILQAN 245 Query: 224 PEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQM 278 PEID + A E +G ++ + + +K G+V ++ Sbjct: 246 PEIDGLY--AANDEMLLGALEAMEAAGRTDEIVKIGCDAIDDTLDAMKAGKVDATIAEPP 303 Query: 279 VWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 + G+ + A L+G+ V V ++T D Sbjct: 304 FFLGKAILNTAYDYLEGKQVEPYVILDNQLVTQDTVDS 341 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 127/293 (43%), Gaps = 11/293 (3%) Query: 25 WHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGG 84 + ++ L A+ + + +L + +++++ G + A+ G +L VL+ Sbjct: 5 ATLISAALLTSTVSLGAQAQDTMAIVVSTLNNPFFVTMKDGAETRAKELGYNLIVLD--S 62 Query: 85 YSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVAS---LPVIELVNAIDAPQVKS 141 + + + + ++ G +AIL+ + + ++A+ +PV+ L V S Sbjct: 63 QNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGDVVS 122 Query: 142 RVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVD 201 + G G ++V+ K V+ + G ++E EGF A+ GS + ++ Sbjct: 123 HIASDNVVGGEMAGNFIVEKVGEK-AKVIQLEGIAGTSAARERGEGFMNAVKGSHMELLA 181 Query: 202 IALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK---TPLTVVSFYLS 258 D D N+++ +L +P++ V A E A+G R ++ + +V F + Sbjct: 182 SQPADFDRTKGLNVMENLLAANPDVQAVF--AQNDEMALGALRAIQASGKEVMIVGFDGT 239 Query: 259 HQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTP 311 + RG++ + Q G L +E A + L+G+ V D + P+ V+T Sbjct: 240 DDGIAAVNRGKLAATIAQQPDLIGALGIETADKVLKGEQVEDYIPVPLKVVTK 292 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 132/317 (41%), Gaps = 18/317 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M L+ L++ ++ A +A T QA + + + +++ Sbjct: 1 MSKLMKSLMAGALVFAVAAC-----SKQGPETAQAPDAGTDGGKPAIGLAVSTQSNPFFV 55 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 +L G +E A++ G+ L ++A A Q A I+ Q + IL+ + + Sbjct: 56 TLKKGAEEEAQKQGLTLITVDAQ--DDPAKQIASIEDLIQKKVKVILVNPTDSDAVVGAV 113 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 A +PV+ L +++ +V S V G YL++ + +V+ + G Sbjct: 114 KAANAAGIPVVTLDRSVNGGEVASHVASDNVAGGKMAAEYLLEKIGNQG-DVVELEGIPG 172 Query: 178 AGGSKEMVEGFRAAIAG-SPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 A ++E +GF I V++V D D ++++ +L+ + + V A Sbjct: 173 ASAARERGQGFHDVIDQAKDVKVVGRQPADFDRAKGLSVMENILQANKNVKGVF--AHND 230 Query: 237 EAAMGEGRNLK----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 E A+G + L+ +TVV F + +K G++ + + G+ AV+ A + Sbjct: 231 EMALGAVQALEAAGMKDVTVVGFDATDDAVNAVKAGKMSATVAQKPKLIGKTAVDAAKKI 290 Query: 293 LQGQSVSDNVSPPILVL 309 + GQ V ++ P+ ++ Sbjct: 291 IDGQPVDKSLPVPLDLV 307 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 253 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 121/278 (43%), Gaps = 12/278 (4%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 R K+ + +L + +++SL G ++ ++ G +L VL+ + A +++ I+ Q Sbjct: 31 AREKKIGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVLD--SQNDPAKERSNIEDLIQG 88 Query: 102 GAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 G +++ + + A++PVI + + +V S + + G ++ Sbjct: 89 GISVLIVNPTDSDAVINSVQVANKANIPVITVDRQANGGEVVSHIASDNIKGGELASSFI 148 Query: 159 VQWAHGK-PLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLL 216 + K + V+ + G A ++E +GF I S ++++ + D +++ Sbjct: 149 IDELKNKKDIKVVELQGIPGASATRERGKGFHNIIDKKSNLKLISSQAANFDRAQGLSVM 208 Query: 217 QEMLERHPEIDVVAGTAIAAEAAMGEGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMA 273 + +++ + D V A E A+G + LK + VV F +++ + Sbjct: 209 ENIIQAQSDFDAVF--AHNDEMALGAAKALKTANKKIIVVGFDGDEDAKTAIEKSEISAT 266 Query: 274 ASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTP 311 + Q G ++E A++ GQ++S N+ + ++T Sbjct: 267 VAQQPALMGSTSIETAVKISNGQNISKNIPVKLRLITK 304 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 253 bits (646), Expect = 9e-66, Method: Composition-based stats. Identities = 51/334 (15%), Positives = 126/334 (37%), Gaps = 25/334 (7%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + L + +S+ + A + + + S YWLS Sbjct: 4 KRLALITMSVMLSAGVLAGCGQK-------------SASDSTKKNIALIVKSTDSEYWLS 50 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDL 118 + G ++AA+ G ++ + + ++ + I+L +S T P Sbjct: 51 VKAGAEKAAKEAGANIIFKGPATEQDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVE 110 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 A +P++ + + +D+ +V S + + Q + GK V ++ Sbjct: 111 NAINAKIPLVTVDSGVDSDKVASFIATDNEKAASQAADVCAELI-GKSGKVGVVNFVPGV 169 Query: 179 GGSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 + + +GFR ++ + ++ +D + +++L +P++ + A Sbjct: 170 STAVQREKGFRDGMSKHSGIELLKTQYSQSDKSKAMAITEDILTANPDVKAIF--AANNR 227 Query: 238 AAMGEGRNLKTP-----LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 +A+G + LK + VV+F +G++ G + GE V+ + Sbjct: 228 SALGVAQALKGKGVAGKVKVVAFDADPDEIKGIEDGSITALIVQNPYKMGEEGVKNVLAL 287 Query: 293 LQGQSVSDNVSPPILVLTPKNADREHIRRSLSPG 326 ++G++V + + ++T +N + +++ L P Sbjct: 288 MKGETVEKRIDTGVTIVTKENINDPEVQKVLYPE 321 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 122/304 (40%), Gaps = 6/304 (1%) Query: 17 FSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVD 76 FS +L + ++ + +L YW + G + A + GVD Sbjct: 9 FSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKAAGKELGVD 68 Query: 77 LKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDA 136 + V+ S++ Q I+ A+++ S + A++PV+ + Sbjct: 69 VTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETATVPVLLIDTDAKL 128 Query: 137 PQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP 196 S +G ++ GY+ G+ L K V ++ G + E V+G +AA+ + Sbjct: 129 KNKTSFIGTENYEAGYEGGKLLSSLLQ-KGDKVAIISGALGNTATDERVKGAKAALEEAG 187 Query: 197 VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT---PLTVV 253 + IV D+D ++++ +L+++ ++ V A + A+G R ++ + V+ Sbjct: 188 MVIVAEQPADSDKTKAMSVMENILQKNNDVKGVF--AANDDMALGVLRAVEAKGLDVKVI 245 Query: 254 SFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 + + + G++ + G V+ A+ + G+ V ++ + V+T N Sbjct: 246 GTDGTLEAVESILDGKLAGTIAQNPYKMGYEGVKNALAAINGEKVDKRINSGVEVITKDN 305 Query: 314 ADRE 317 A + Sbjct: 306 AQEK 309 >UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=bacterium Ellin514 RepID=B9XK02_9BACT Length = 330 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 54/305 (17%), Positives = 106/305 (34%), Gaps = 17/305 (5%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYG-----VDLKVLEAGGYSQLATQQ 92 A +++ + + YW ++ G +A R VDL Q Sbjct: 21 SCAADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIKVDLIWKGPLREDDRDQQI 80 Query: 93 AQIDQCKQWGAEAILLGSST---TSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQ 149 ++ ++L P A +PV+ +A+ + S V ++ Sbjct: 81 QVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFDSALKTDKYVSFVATDNYK 140 Query: 150 MGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDI-ALGD 206 G + Q GK NV+L+ + ++E GF + ++++ Sbjct: 141 GGQLAAERMGQLLEGKG-NVILLRYAVGSASTEEREAGFMDTLKSKFPNIKVISSDQHAG 199 Query: 207 NDIEIQRNLLQEMLERHP-EIDVVAGT----AIAAEAAMGEGRNLKTPLTVVSFYLSHQV 261 E Q +L R E++ + +A A+ + + +V F Q Sbjct: 200 ATRETAYQASQNLLNRFGHEVNGIFCPCEPPTVAMAKALRDIGKAGGKVKMVGFDAGSQS 259 Query: 262 YRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 LK G V + G L V ++ LQG+ V + + ++TP+N ++ I+ Sbjct: 260 VIDLKNGDVQGLVVQNPLRMGYLGVITMVQHLQGEKVEKRIDTGVQIVTPENMEQAGIKE 319 Query: 322 SLSPG 326 + P Sbjct: 320 LIHPP 324 >UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQW7_9CLOT Length = 354 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 70/351 (19%), Positives = 118/351 (33%), Gaps = 24/351 (6%) Query: 1 MRVL----LFLLLSLFMLPAF------------SADNLLRWHDAQHFTVQASTPLKAKRA 44 M+ + L L + ML +A + + + P +AK Sbjct: 1 MKKVWGFTLAAALVISMLAGCGAQKQAEEKKDTAAQTQAQTEKESTAQKENAAPTEAKED 60 Query: 45 --WKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 + + SL YW + G Q A G + + L Q ++ Q G Sbjct: 61 AEKVIAVIPKSLLFDYWQYVRIGAQSAGLDEGYAIDFQGTRTDTDLEGQVKLVEDFIQRG 120 Query: 103 AEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 AI++ Q + A +PVI + ++A +S V G L Sbjct: 121 VSAIVISPVNPDGMVPVLQQAEDAGIPVIIMDGKLNADFPRSTVSTNDEAAGKFAAEKLK 180 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQE 218 + A ++ A +GF + P +I+ G D N+ Q+ Sbjct: 181 ELAGDAGGTFAIVSAVPGAVQEGGREKGFSDELGTYPNYKIIGTYYGKGDRNQTYNITQD 240 Query: 219 MLERHPEIDVVAGTAIA--AEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASD 276 +L +P+I A +G V+F S +V ++ G V A + Sbjct: 241 ILTSNPDITGFYTVNEGSSAGVTLGVREGDLKEKIFVAFDPSTEVLDAIRDGYVDGAVAQ 300 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGG 327 G AV AI+ L G++V + P+ +T N D I+ L P Sbjct: 301 NPYLIGRTAVLNAIKVLNGETVEKKIDVPVTWVTIDNLDDPEIQNVLKPEE 351 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 56/336 (16%), Positives = 117/336 (34%), Gaps = 19/336 (5%) Query: 1 MRVLLFLLLSLFM-----LPAFSADNLLRWHDAQHFTVQASTPLKAK----RAWKLCALY 51 M+ LL + L A + N + ++ A + + L Sbjct: 1 MKKNKVLLWGIVFAIAVQLAACGSGNKDSASQEKTSKNASAEKSGASSGNYKGKSIAYLT 60 Query: 52 PSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS 111 PSL +W + +G+++ A+ +KV TQ A + + I++ + Sbjct: 61 PSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLANVQDAITNKVDGIVISPT 120 Query: 112 TT---SFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLN 168 + + A +PV+ D+ + S + + G Y+ + K Sbjct: 121 DSASCIAVLSAAEEAGIPVVICDIGTDSGEYVSFISTDNSGGAKKLGEYVADKLN-KGDE 179 Query: 169 VLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDV 228 + + EGF I + + + + Q+++ +P + Sbjct: 180 IAQIALNQARKNGVLRKEGFEEGIKEKLKEVDFRQMEKVNRDEGVRYTQDLITSYPNLKC 239 Query: 229 VAG----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGEL 284 + ++ A A+ E N +V F S +V +K G ++ A+ Q V+ G Sbjct: 240 IFCHSEDPSMGAVTALKEINN--DKCKIVGFDCSPEVVEAIKSGDILATAAQQPVFMGRT 297 Query: 285 AVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 AV+ L G + +S L++T N + + + Sbjct: 298 AVDCLKTHLDGGTPEKEISVDTLLVTQDNINDVYDK 333 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 250 bits (639), Expect = 6e-65, Method: Composition-based stats. Identities = 57/304 (18%), Positives = 115/304 (37%), Gaps = 16/304 (5%) Query: 29 QHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAAR-RYGVDLKVLEAGGYSQ 87 A T + A P D + L GM+E + + V++ ++A + Sbjct: 41 SGKQETAQTSGDKSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDA--MND 98 Query: 88 LATQQAQIDQCKQWGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDA-PQVKSRV 143 + Q +Q++ Q +AI+L T + A++P++ + D + + V Sbjct: 99 ASKQLSQVENFIQQKVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVDKATAYV 158 Query: 144 GVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDI 202 G + G + + +GK + +M G + EG + I P +++V Sbjct: 159 GSESIKAGIMQMEEVAKLLNGKG-KIAIMNGQMGHEAQIKRTEGNKQVIKKYPDMKVVLE 217 Query: 203 ALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYL 257 + D +L++ L+ +ID V E A+G L+ + V Sbjct: 218 GTAEWDRAKGMSLMENWLQSGKKIDAVVCN--NDEMAIGAIMALEDEGKLDDVIVAGVDA 275 Query: 258 SHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 + +K G++ + QG+L +E AI+ +G+ V P ++T N + Sbjct: 276 TPDALEYVKEGKLKVTVFQNAKGQGQLGLEVAIKAAKGEKVEKFNWIPYELVTKDNVEEY 335 Query: 318 HIRR 321 + Sbjct: 336 IKKW 339 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 62/335 (18%), Positives = 125/335 (37%), Gaps = 20/335 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKR----AWKLCALYPSLKD 56 MR L ++ A VQ P KA + + + +L + Sbjct: 1 MRKTTRSLFAMTCAAVAIAAAGCGTTSENTGQVQQQDPTKACKGPDSKYTIGMSQANLAE 60 Query: 57 SYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT--- 113 Y + ++ +++AA + V A + Q + ++ + +++ + Sbjct: 61 PYRVRMDEDIRKAAEKV-PQFDVQFADAAKDNSKQVSDVENFMTKKVDLLMISPNEAAPL 119 Query: 114 SFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP 173 + + +PV+ L ++ + +G Q+G Q G Y + ++ + Sbjct: 120 TDVVKKAYNEGIPVVVLDRKVEGEAFTTYIGADNVQIGRQAGEYFKNTLLPQGGKIVQLK 179 Query: 174 GPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA 233 G + + E +GF IAGS + +VD A G+ + + + + +L+ HP+I V A Sbjct: 180 GLSGSTPAAEREKGFMEGIAGSKIEVVDTADGEWERSVGQQKMDALLKAHPDIQAVY--A 237 Query: 234 IAAEAA----MGEGRNLKTPLTVVSFYLSH---QVYRGLKRGRVIMAASDQMVWQGELAV 286 A + + L V + +++GR+ GE AV Sbjct: 238 QNDPMAEGAWLAAQAAGRKDLKFVGIDGLPIESGGIKAVEQGRLSATNLYPTG--GEEAV 295 Query: 287 EQAIRQL-QGQSVSDNVSPPILVLTPKNADREHIR 320 E A + L Q V + P ++T +NA + + R Sbjct: 296 EAARKLLIDCQPVPKEQTLPTELVTRENAAQVYTR 330 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 126/333 (37%), Gaps = 25/333 (7%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAK---------RAWKLCALY 51 M+ LL +L + ++ AQ Q + Sbjct: 7 MKKANMLLAALCAVGMTASLFGCSSGQAQGGDTQPQASAAPAADAASAPQREQIVVGFSN 66 Query: 52 PSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS 111 S +++ L GMQE A GV L + G LA Q Q++ G + I+L Sbjct: 67 WSRSFEFYVDLEKGMQEVADAQGVKLITQDPNG--DLAAQTKQVEDFITQGVDGIVLCPI 124 Query: 112 TTSFPDLQK---QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLN 168 ++ + A +P++ A+ V S + G +++ + G Sbjct: 125 DSNAAVTEAETINQAGIPLVTTDIAVAGGDVASHIASDNTLGGQLAAQFIGEQLGGTG-K 183 Query: 169 VLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEI 226 V L+ E GF +A + IV + G++ E ++++ +L+ +P++ Sbjct: 184 VALIN-NPTITSLIERETGFTDTMAQKYPDIEIVAVQSGESKREKGLSVMENILQSNPDV 242 Query: 227 DVVAGTAIAAEAAMGEGRNL----KTPLTVVSFYLSHQVYRGLKRGR-VIMAASDQMVWQ 281 V A+ +G + + + + +V F + + + +K G + + + V Sbjct: 243 QGVF--AVNDMMGLGALQAVQAAQRDDIVIVGFDATEEAVKYIKEGSALKASVAQNPVEL 300 Query: 282 GELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 G+ +E ++ + G+ V N+ P+ ++T NA Sbjct: 301 GKTTMETMLKVIAGEQVEKNIPVPVELVTAGNA 333 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 59/296 (19%), Positives = 116/296 (39%), Gaps = 12/296 (4%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 ++A +++ L SYWL++ G + AA+ G ++ + +A Q I+ Sbjct: 25 VQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNVINDF 84 Query: 99 KQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPG 155 +AI++ ++ + P + A +PVI + + I+A S + + + Sbjct: 85 VNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINADFPISHIATNNKEAAKKAA 144 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRN 214 L K V +P A S GF+ I+ + +V + +D Sbjct: 145 EVLANIIGKKG-EVACIPFVAGAATSIARENGFKEGISNYKNIDLVAVQYSQSDYATAMK 203 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGR 269 + + +L HP + + A A+G R LK + +V F + +K G Sbjct: 204 VTENILTAHPNLKGIF--AANEAGAVGAARALKARGKTADVILVGFDAAQTEIDAMKEGI 261 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 + + G V+ A+ L+G+ V + ++V TP N + + + L P Sbjct: 262 IDALIVQRPYMMGYEGVKNAVAALEGEEVEKLIDTGVVVATPDNMNDPEVYKVLFP 317 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 60/327 (18%), Positives = 137/327 (41%), Gaps = 15/327 (4%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 MRV L L + + A + + K+ + +L+ +++ Sbjct: 1 MRVRKILSLGIAGILAIGMLTGCSMEGPSKSDNKGGS---DKKDLTIGVSTITLQHQFFI 57 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL--GSSTTSFPDL 118 ++ G++E A+ GV + V + +A Q + I+ Q + +++ ++ P + Sbjct: 58 DIDEGIKEKAKELGVKVIVNDPD--QDVAKQTSAIEDFIQQNVDGMIVLGTDNSAIVPAV 115 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK---PLNVLLMPGP 175 + +PV+ + ++ + S VG + G + G Y ++ K + ++ Sbjct: 116 EGAFEKMPVVTVDAVLNTENITSYVGTVSYDAGKKLGEYTKKYIDEKLGGKSEIAIVT-D 174 Query: 176 DNAGGSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 + + ++GF+ A+ GS V+I++ G D E N ++ +++ +P++D++ TA Sbjct: 175 LKSQIQMQRIDGFKDALKGSANVKILNSQPG-YDREESLNTVENLIQSNPDVDIIYATAE 233 Query: 235 AAEAAMGEG--RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 + + +V F L+ + G+ G ++ Q G LAVE ++ Sbjct: 234 NSVLGAKAALESAKNKDVKIVGFDLTEEASSGITDGTILAMIQQQPKEMGRLAVEAVVKA 293 Query: 293 LQGQSVSDNVSPPILVLTPKNADREHI 319 ++G+ V N+ P L+ +N Sbjct: 294 IKGEKVEKNIPVPALLYDKENIKDFKN 320 >UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Bacteria RepID=C6D2L0_PAESJ Length = 333 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 54/335 (16%), Positives = 115/335 (34%), Gaps = 14/335 (4%) Query: 1 MRVLLFLLL-SLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYW 59 M+ LL+ +L + SA + + + + + +W Sbjct: 1 MKKFTALLVVALMTVVMLSACGSNNSDGSSKSGTDNGGTKASGDKIYIPIISKGFQHQFW 60 Query: 60 LSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD-- 117 ++ G ++AA + V++ +Q+ Q + AI + + Sbjct: 61 QAVKAGAEKAATEFNVEITFEGPETEAQVDKQIEMLQAALDKKPSAIGFAALDSQASVPL 120 Query: 118 -LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 + + A +PVI + +D+ + + + G+ + ++ Sbjct: 121 LQKAKAAGIPVIAFDSGVDSDIPITTASTNNVAAAALAADKMAELIGGEG-EIGVIVHDQ 179 Query: 177 NAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 + + +GF I ++IVDI G D +L + M++ HP I G+ Sbjct: 180 TSVTGVDRRDGFVNRIKEKYPNIKIVDIQYGGGDHLKSTDLAKAMIQAHPNIKGFFGS-- 237 Query: 235 AAEAAMGEGRN-----LKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 +A+G + +TV+ F +K G + A + V G V+ A Sbjct: 238 NEGSAVGVINAVTELKKEGQITVIGFDSGKAQIDAIKSGVMAGAITQNPVGIGYETVKAA 297 Query: 290 IRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 + ++G+ V + N D + I+ L Sbjct: 298 VEAIRGEKVESTIDTGFYYYDKSNIDSDEIKAVLY 332 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 122/290 (42%), Gaps = 11/290 (3%) Query: 28 AQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQ 87 + S A+ + + +L + +++++ G + A+ G +L VL+ + Sbjct: 10 ISAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIVLD--SQND 67 Query: 88 LATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVAS---LPVIELVNAIDAPQVKSRVG 144 + + + ++ G +AIL+ + + ++A+ +PV+ L +V S + Sbjct: 68 PSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRGEVVSHIA 127 Query: 145 VPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIAL 204 G G ++ V+ + G ++E EGF A+ GS ++++ Sbjct: 128 SDNVVGGEMAGHFIEAKIGSD-AKVIQLEGIAGTSAARERGEGFMNAVKGSKMQLLASQP 186 Query: 205 GDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK---TPLTVVSFYLSHQV 261 D D N+++ +L +P++ V A E A+G R ++ + +V F + Sbjct: 187 ADFDRTKGLNVMENLLAANPDVQAVF--AQNDEMALGALRAIQASGKSVMIVGFDGTDDG 244 Query: 262 YRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTP 311 ++RG++ + Q G + +E A + L+G+ V + + V+ Sbjct: 245 IAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEAYIPVALKVIAK 294 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 107/295 (36%), Gaps = 24/295 (8%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGA 103 A + + S+ YW + G++ A + GVD K + Q ++ G Sbjct: 19 ALTIGVIGKSV-HPYWSQVEQGVKAAGKALGVDTKFFVPQKE-DINAQLQMLESFIAEGV 76 Query: 104 EAILLGSSTTSFPD---LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQ 160 + I + S + + +PVI L +G +Q GY G + + Sbjct: 77 DGIAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKE 136 Query: 161 WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEML 220 GK V++ G A S + ++GF+ AIA S + IVDI + D +L + L Sbjct: 137 LLGGKG-KVVIGTGSLTAMNSLQRIQGFKDAIADSEIEIVDILNDEEDGARAVSLAEAAL 195 Query: 221 ERHPEIDVVAGTAI--AAEAAMGEGRNLK-TPLTVVSFYLSHQVYRGLKRGRVIMAASDQ 277 HP++D G A+ K + +V F + + + +K G + + Sbjct: 196 NAHPDLDAFFGVYAYNGPSQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQR 255 Query: 278 MVWQGELAVEQAI---------------RQLQGQSVSDNVSPPILVLTPKNADRE 317 G L+V + V + + V+TP+N D Sbjct: 256 PYMMGYLSVTVLYLMNKIGVQNTLMMLPKVTVDGKVDYVIDTGVDVVTPENLDEY 310 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 128/324 (39%), Gaps = 16/324 (4%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + L + + + +A N + + AK + + + +++ Sbjct: 8 KTLAVVASATLLCAGLAACNRDSGGNNATGDHTTTGSASAK---TITFALSTQANPFFVQ 64 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDL 118 + Q+ A G+ + +A ATQ Q+ G +++ + + Sbjct: 65 MRESAQKKADELGLAINFQDAA--DDSATQSNQLANAAASGTGVVIINPTDSDAMAPAVQ 122 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 Q +PV+ + A++ V S + G Q + L +G+ +L++ G + Sbjct: 123 QLVDEKIPVVAVDRAVNNANVASYIASDNETGGKQAAKVLSDAINGEG-EILVLQGKTGS 181 Query: 179 GGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 S+E +GF + +P +++V + + ++ +L+ HP + + A E Sbjct: 182 SASRERGKGFDEGLKDNPNIKVVAKQTAEFERAKGLDVTTNLLQAHPNVKAIF--AENDE 239 Query: 238 AAMGEGRNLK----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL 293 A+G L + V+ F + + +K GR+ + + Q V E AV +A + L Sbjct: 240 MALGAIEALGSKAGKDVKVIGFDGAEDALKAIKDGRMYASIAQQPVKMAEQAVIEASKLL 299 Query: 294 QGQSVSDNVSPPILVLTPKNADRE 317 +G++ + + ++ T +N D+ Sbjct: 300 KGETATKKMQVEVVAATKENVDKF 323 >UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacillales RepID=C6D2L3_PAESJ Length = 332 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 52/302 (17%), Positives = 119/302 (39%), Gaps = 14/302 (4%) Query: 36 STPLKAKRAWKLCALYP--SLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQA 93 + + ++ + S +W L G+++AA +G ++ V+ +++ TQ Sbjct: 29 AASQRTEKTVDIIVTVKAKSSAIDFWKVLITGVEDAANEFGANVTVIGPPSETEIDTQTE 88 Query: 94 QIDQCKQWGAEAILLGSSTTS---FPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQM 150 Q+ Q + +AI++ ++ + Q A + +I + + I++ S + Sbjct: 89 QLKQAIRQKPDAIVMAATDYNRLVPVAQQIVKAGIKLITVDSRINSDDALSFIATDNIAA 148 Query: 151 GYQPGRYLVQWAHG-KPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDND 208 G + G + + V +M E +G R + G + + + Sbjct: 149 GEKAGEEMAKLLPESSSSKVAIMSYVYGTSSQLEREKGVRQWLEGHSHIEVASTLYSEGR 208 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYR 263 +E L +E+L P I + G + + +G GR ++ + +V F S + Sbjct: 209 LEKAYELTKELLSEDPGIKGIVG--LNEPSTVGAGRAIRDLGLSGKVKLVGFDSSVDEVK 266 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSL 323 ++ G + + G L+V+ AI ++G+ V + +++ N E ++ L Sbjct: 267 LIEGGVLQATIVQKPYNMGYLSVKTAIEAVRGKKVPKLIDTESVIINKDNMYTEQNQKLL 326 Query: 324 SP 325 P Sbjct: 327 FP 328 >UniRef50_A7B0I6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0I6_RUMGN Length = 337 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 128/321 (39%), Gaps = 13/321 (4%) Query: 14 LPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLK--DSYWLSLNYGMQEAAR 71 L + + KR +K+ + ++ + +W L G + A Sbjct: 14 LIGVMTAGFVLLILILITIGVLQDSSQNKRTYKIIMVPKTIDESNDFWTGLIEGAKLGAE 73 Query: 72 RYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVI 128 +G +++V+ + Q I++ + +A L+ + + + A + VI Sbjct: 74 EFGCEIEVVGSDSEDDYEGQNRLIEESIKKNPDAFLIAPCSYTHTTEAVQEAINAGIKVI 133 Query: 129 ELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGF 188 + + ID V F+ G + G + + + ++ + + E +G Sbjct: 134 LVDSVIDKEIANGVVATDNFKAGKELGTF-AKTILKPDSKIGVVAHVKGSSTATEREDGI 192 Query: 189 RAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT 248 R + RI DI ++ ++ +L ++ML+ PEIDVV GT +A+G R +K Sbjct: 193 REGLGEDQNRIQDIVYCNSSYDLASDLTEKMLKERPEIDVVIGT--NEYSAVGAARGVKK 250 Query: 249 -----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVS 303 + VV F S + + L+ G + G L VEQA++ ++G + N+ Sbjct: 251 MGMEDQVKVVGFDNSVEQIQLLEAGVFQGIVIQKPFNIGYLGVEQAVKAIEGYPMEYNLD 310 Query: 304 PPILVLTPKNADREHIRRSLS 324 ++T +N E +R L Sbjct: 311 SGCKLITKENMYEEENQRLLY 331 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 57/319 (17%), Positives = 128/319 (40%), Gaps = 32/319 (10%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 ++ L+ + ++ +F K+ + +L + ++++ Sbjct: 6 KIFSVGLMLMMLMTSFIGCG-------------------RDNKPKIGMVLSTLNNPFFVN 46 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQ 121 + G ++ A + G DL VL+ + A ++A ++ Q G A+L+ + + + Sbjct: 47 MKDGAEKEAEKLGYDLVVLD--SQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVE 104 Query: 122 VAS---LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPL--NVLLMPGPD 176 VA+ +PVI L + ++ S + + G Y++ + NV+ + G Sbjct: 105 VANKSNIPVITLDRQANGGKITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEIQGIP 164 Query: 177 NAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 A +++ EGF + + I D D + +++ +++ +P I VV A Sbjct: 165 GASATRDRGEGFHNIMDKNDKFNFISIQAADFDRQKGLQVMENIIQANPNIQVVF--AHN 222 Query: 236 AEAAMGEGRNLKT---PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 E A+G + +K V+ F + + + + Q G L VE A + Sbjct: 223 DEMALGAVKAIKASGINALVIGFDGNDDAKDSIDANEMTAIIAQQPDLIGALGVELANKI 282 Query: 293 LQGQSVSDNVSPPILVLTP 311 +G+S+ + ++ + V T Sbjct: 283 YKGESIKNKIAADLKVYTK 301 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 126/329 (38%), Gaps = 26/329 (7%) Query: 1 MRVLLF--LLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSY 58 MR L + +L + ++ N + + + A S+++ + Sbjct: 1 MRHLSLTPITTTLSIFLLLASCNQSGTSETSQDGE--------GKKLVVGATMLSMQNEF 52 Query: 59 WLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--- 115 ++++ M + A++ G++L ++A Q Q++ +AI++ Sbjct: 53 IVNVHDEMDKEAQKAGIELITVDA--ERSALKQVEQVESFIAQKVDAIIMNPCEVEASSP 110 Query: 116 PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 + A +P+I + + + + + VG + +++ GK NV++M G Sbjct: 111 AVAKALAAKIPIINVNSET-SSKPSAFVGSDDVESARIAMKFIADKLGGKG-NVVMMHGY 168 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHP-EIDVVAGTA 233 + +G R + P ++++ G+ D +L++ ++ + +I+ V A Sbjct: 169 MGQAAQIKREQGAREILKQYPNLKLLAHQTGEWDRAKAMSLMENWIQSYGSQINAVF--A 226 Query: 234 IAAEAAMGEGRNL-----KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 E +G + L K + VVS + +K+G + QG A+ Sbjct: 227 HNDEMGLGAVKALTDAGLKDKVIVVSIDAIPDALQAVKKGSLDATVFQNAEQQGAKAIAT 286 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNADRE 317 AI+ +GQ P ++T N + Sbjct: 287 AIKAAKGQPFDKETLVPFQLVTKDNLSKF 315 >UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Tax=Bacteria RepID=A9GMT2_SORC5 Length = 340 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 53/334 (15%), Positives = 111/334 (33%), Gaps = 19/334 (5%) Query: 7 LLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGM 66 +++ F++ +A + A A ++ + +W S++ G Sbjct: 5 VVVCAFVIALLAACSKTSSSATTSTDAGAGATGGA--RLRIAVVPKGTTHEFWKSVHAGA 62 Query: 67 QEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVA 123 +A+R VD+ L Q + G I+L + P + A Sbjct: 63 VKASRELDVDVVWKGPLREDDLKAQVDVVSSFVAQGVSGIVLAPLDATALRAPVRAARQA 122 Query: 124 SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKE 183 +PV+ + + + S V G G +L + V+++ + + ++ Sbjct: 123 KIPVVVFDSDLASDDHVSFVATDNEAAGRLAGEHLGKAIGEDG-KVVVLRYQEGSASTQH 181 Query: 184 MVEGFRAAIAGSPVRIVDI--ALGDNDIEIQRNLLQEML----ERHPEIDVVAGTAIAAE 237 +GF A+ P V G E + + +L I V Sbjct: 182 REKGFLDAVRAMPGVTVASENQYGGATTESAFHKSESLLLAQRAAEGAIAGVF--TPNES 239 Query: 238 AAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 G + L+ + V F S ++ L+ G + G +AV+ + Sbjct: 240 TTFGMLQALRKTNVARKVKFVGFDASEKLLGALREGDIEALVVQNPFNMGYVAVKTMVAH 299 Query: 293 LQGQSVSDNVSPPILVLTPKNADREHIRRSLSPG 326 L G+ V+ + V+T ++ D ++ + P Sbjct: 300 LHGEKVAARIDTGSRVVTRQDLDDPAVQEIVRPD 333 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 103/275 (37%), Gaps = 12/275 (4%) Query: 52 PSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS 111 P + +W S+ G +E A GV + VL S + +Q Q++ G AI + + Sbjct: 32 PGAGNPFWASVERGAREKAAELGVKIVVLSPPQESDVQSQINQVEDQITKGVTAIAIAVT 91 Query: 112 TTSFPDL---QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLN 168 + + A +PV+ + V +G ++ + + Sbjct: 92 DPNALAKVIESARSAGIPVVFIDTKGINKGVT-FIGTDNKAGAKMAADFICDRV-SRGSD 149 Query: 169 VLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDV 228 V ++ G K +G A + G + IV + D R +++ +L R+ ++ Sbjct: 150 VAILQGIITQSTGKARADGAHAGLKGCGLNIVAEQPANWDRAQGRTVMENILTRNQKLKA 209 Query: 229 VAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGE 283 V A A+G LK + VV F + + + G + + G Sbjct: 210 VF--ASNDNMALGAVEALKDADMLNDVIVVGFDANPDAAKSILAGEMTATIAQFSYNMGA 267 Query: 284 LAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 VE+A+ +G+S+ V L++T KNA Sbjct: 268 YGVEKALELAKGRSLPPVVDTGTLLVTKKNAADFK 302 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 47/350 (13%), Positives = 113/350 (32%), Gaps = 36/350 (10%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKR----------------- 43 M + + ++S L + + + A Sbjct: 10 MALAMSTVMSAAALSGCGSTPKETVPETAKEQQTDAQTADATGESGKDEESSAEAASGNY 69 Query: 44 -AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 + + +L + Y ++L G + A GV ++V ++ Q I+ Sbjct: 70 GDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQLGIIENMIANK 129 Query: 103 AEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKS------RVGVPWFQMGYQ 153 + ILL S++ + + A +P+I L + + + G ++ Sbjct: 130 VDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFYGTNNYEGAKL 189 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQR 213 G Y+ + K ++ G + + + GF AG V +V + +++ Sbjct: 190 AGEYVAKNF-EKGTKTAILKGIEGQTNAADRYNGFIEG-AGDTVTVVAEQTANWEVDQGY 247 Query: 214 NLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRG 268 Q ++ +P++++ +G R +K + ++ F + ++ G Sbjct: 248 TAAQNIISANPDVELFFCC--NDNMGIGALRAIKEANMQEQIQIIGFDAVSEALNLVENG 305 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 + + G+L V+ ++ G + V+T N Sbjct: 306 EFLATVAQYPAEMGKLGVDNMLKIFDGGEAESYIDTGTEVITKDNVGEFK 355 >UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD Length = 338 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 57/290 (19%), Positives = 114/290 (39%), Gaps = 12/290 (4%) Query: 45 WKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAE 104 ++L + D ++ ++ G + AAR+ G L V A Q ++ Q + Sbjct: 47 YRLALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPE-EFSPAAQTPILNAVVQSNPD 105 Query: 105 AILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVK-SRVGVPWFQMGYQPGRYLVQ 160 AIL+ + + P +PV+ + I+ ++ +R+ + G G L + Sbjct: 106 AILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEEIALARISSDNVEGGRMAGEALAE 165 Query: 161 WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEM 219 GK VLL+ + + +GF AI P + + ++D ++ Sbjct: 166 QIGGKG-KVLLISVKPGISTTDQRKQGFEEAIKQYPDIEYLGTEYCNDDPTQAASITTST 224 Query: 220 LERHPEIDVVAGTAIAAEAAMG---EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASD 276 L+ HP++ + G + + G + ++VV+F S L+RG + + + Sbjct: 225 LQAHPDLAGIFGANVFSGQGAGTGVRQAGKRDQVSVVAFDASPTQVEDLRRGNLDVLIAQ 284 Query: 277 QMVWQGELAVEQAIRQLQ-GQSVS-DNVSPPILVLTPKNADREHIRRSLS 324 G V+ A+R L+ G+ ++ +T N D + R L Sbjct: 285 HPNDIGRRGVQIAVRYLESGEEPENKQITTGFTTVTRDNLDAPEVERYLY 334 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 120/304 (39%), Gaps = 20/304 (6%) Query: 32 TVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 + + K K+ + +L + +++ L ++ A + G + + + + A + Sbjct: 21 SFTGLAQEQQKPKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFD--SQNDTAKE 78 Query: 92 QAQIDQCKQWGAEAILLGSSTTS---FPDLQKQVASLPVIELVNAIDA-PQVKSRVGVPW 147 A D G +AI+ + + + A +PV + I+A +++ Sbjct: 79 SAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGINARGLAVAQIYSDN 138 Query: 148 FQMGYQPGRYLVQWAHGKPLN-----VLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVD 201 + G G Y V++ K + + G +A + + GF + + P ++V Sbjct: 139 YYGGVLMGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFKMVA 198 Query: 202 IALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR----NLKTPLTVVSFYL 257 + D + + +++L+ HPEI + A+G + +T + + F Sbjct: 199 QQSAEFDRDTAYKVTEQILQAHPEIKAIWC--GNDAMALGAMKACEAAGRTDIYIFGFDG 256 Query: 258 SHQVYRGLKRGR-VIMAASDQMVWQGELAVEQAIRQLQGQ-SVSDNVSPPILVLTPKNAD 315 + V +K G+ ++ LAVE A + L+G+ S + V + ++T +N D Sbjct: 257 AEDVINAIKEGKQIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVTVELVTRENID 316 Query: 316 REHI 319 + Sbjct: 317 KYTA 320 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 114/282 (40%), Gaps = 11/282 (3%) Query: 36 STPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI 95 ST A + + ++ + +++++ G + A G L L+ + + + A + Sbjct: 21 STSFSASAQDAIAIVLSTMNNPFFVTMKDGAEAKAAELGYKLIALD--SQNDPSKELANV 78 Query: 96 DQCKQWGAEAILLGSSTTSFPDLQ---KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGY 152 + G +AIL+ + A++PV+ L + S + G Sbjct: 79 EDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDRTAAHGDIVSHIASDNIAGGE 138 Query: 153 QPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQ 212 G ++ Q GK V+ + G ++E EGF A+ + ++ D D Sbjct: 139 LAGEFIAQQL-GKNAKVIQLEGIAGTSAARERGEGFSNAVTANNFELLSSQPADFDRSKG 197 Query: 213 RNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK---TPLTVVSFYLSHQVYRGLKRGR 269 N+++ ML + ++ V A E A+G R ++ + V+ F + + ++R + Sbjct: 198 LNVMENMLAANGDVQAVF--AQNDEMALGALRAIEAAGKDILVIGFDGTDEGIAAVRRQQ 255 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTP 311 + + Q G A+ A R L+GQ V ++ + ++T Sbjct: 256 LSATVAQQPELLGATAIMTADRILKGQVVEKSIPVALKIITQ 297 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 67/331 (20%), Positives = 138/331 (41%), Gaps = 19/331 (5%) Query: 1 MRVLLFLL-LSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYW 59 +R L L S FM + S + A + P A A K+ + +L + ++ Sbjct: 4 LRWLCVLAWASAFMACSDSPRPTVPDVVASVSSRTQREPDAAPNARKIALVMKTLTNPFF 63 Query: 60 LSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT--SFPD 117 + + G + A + G+DL V A + + Q I+ + +AI++ + P Sbjct: 64 IEMEKGARRAQKELGIDLLVKTAAQETSIEQQIQIIEDLIRMKFDAIVIAPGDSLRLVPV 123 Query: 118 LQKQ-VASLPVIELVNAIDAPQVKS-------RVGVPWFQMGYQPGRYLVQWAHGKPLNV 169 L+ A + +I + N +DA +K + V + Y+ ++ + H KP Sbjct: 124 LKAAQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDNEKAAYESAGFIAREIH-KPAQA 182 Query: 170 LLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDV 228 ++ G +A S++ G A +P +R+V + I+ R++ + + HP+I + Sbjct: 183 AILEGIRSADNSRQRRVGAERAFRENPLIRLVARESANWKIDEGRDVTRRLFSDHPDITL 242 Query: 229 VAGTAIAAEAAMGEGRNLKTP----LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGEL 284 + A+G + L+ + V ++ + R + GR+ + + Q QG Sbjct: 243 LFC--ANDMMALGAIQFLQESGRYGVKVAAYDALEEAKRAILSGRMEVTVNQQAAEQGYQ 300 Query: 285 AVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 + A R L G++V + V ++T ++ Sbjct: 301 GIILASRVLNGEAVPEVVLVETSLVTLESLK 331 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 108/289 (37%), Gaps = 18/289 (6%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYG-VDLKVLEAGGYSQLATQQAQID 96 A+ + + SL + ++ ++ G + A G +L + + +Q ++ Sbjct: 57 MAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYELLAVGMQNETDFESQINAVE 116 Query: 97 QCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQV------KSRVGVPW 147 G +AI++ + + P + A + VI A+D + + VG Sbjct: 117 NFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELAFVGPDN 176 Query: 148 FQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDN 207 G L + G+ V+++ G A + + GF AIA + +++ Sbjct: 177 RMGAEMAGNALGEAL-GEGGRVVIIEGNPGADNATQRRLGFEDAIATHGLELLESRTAHW 235 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL----KTPLTVVSFYLSHQVYR 263 + E + ML HP++ V A A+G L + + VV F V Sbjct: 236 ETEEANQVFAAMLTAHPDLQGVM--AANDSMAIGVIEALDAAGRDDILVVGFDAVPAVLP 293 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQ-GQSVSDNVSPPILVLTP 311 ++ GR++ A++ A+ L+ G + V PI ++T Sbjct: 294 MIEDGRMLATVDQFGQAMAANAIDLALEVLETGVDLEGWVRTPIELVTA 342 >UniRef50_Q1GM88 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Proteobacteria RepID=Q1GM88_SILST Length = 356 Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats. Identities = 116/354 (32%), Positives = 191/354 (53%), Gaps = 20/354 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRW-------------HDAQHFTVQASTPLKAKRAWKL 47 M++ L +L + A A W D + A++ W + Sbjct: 1 MKLFLNTASALLLSVALPATAQEAWFPYPAEEVTPAFSADGSVAEITYEPLAAAEKPWNI 60 Query: 48 CALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL 107 C +P +KD+YWL ++YG+ A R GV+L V+EAGGY++L TQ +QI+ C GA+A++ Sbjct: 61 CVSFPHMKDAYWLGVDYGVVAEAERLGVNLNVVEAGGYTELNTQISQIEDCVASGADAVI 120 Query: 108 LGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW--A 162 +G+ + + +PVI+++N + + ++ ++ V + MG++ G+YL + A Sbjct: 121 VGAISYDGLNNVISEVAGKGIPVIDVINGVSSTEIAAKSLVSFRTMGFETGKYLAEKHPA 180 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLER 222 P+ V PGP AG + GF AA+ GS V++++ GD E Q L++++L+ Sbjct: 181 GADPVTVGWFPGPAGAGWVEAANTGFMAAVEGSAVKVLEPRYGDTGKEAQLKLVEDVLQA 240 Query: 223 HPEIDVVAGTAIAAEAAMGEG--RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVW 280 +PEI +AGTA+ AEAA G R LK + +++FY++ VY G++RG + A +D MV Sbjct: 241 NPEISYIAGTAVTAEAAQGVIRERGLKGEVDILAFYMTPGVYSGIQRGFITGAPADSMVI 300 Query: 281 QGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFY 334 QG +AV+QA+R L+G+ +V P I V+ N L P GF PV+ Sbjct: 301 QGRVAVDQAVRVLEGKDYLKHVGPKIFVVDQDNVKDVARENILPPDGFSPVFSV 354 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 119/320 (37%), Gaps = 19/320 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ +L +L+++ + + + D + ++ + + + + ++L Sbjct: 1 MKKILLVLVTMLFIFSCGS------KDQAAGKTEDKPTETGEKTYTIGVSLLTQQHPFYL 54 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS---FPD 117 SL +++ A V L V A L Q + I+ +AI++ + Sbjct: 55 SLKDAIEKEAAAQNVKLNVSIA--NQDLNKQISDIEDFITKKVDAIIISPVDSKGVLAAV 112 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + + A++PVI + V + V + G G + + +GK V ++ Sbjct: 113 KKAEAANIPVITVDVPAIGVDVAAHVATDNYTGGKIAGEEMARLLNGKG-EVAVIEY-PT 170 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 + +EGF+ IA P ++IV I G Q M++ + + + G A Sbjct: 171 VDSVVQRIEGFKEVIAKYPDIKIVAIQAG-ITRPEALTAAQNMIQANKNLGGIFGFGDDA 229 Query: 237 EAAMGEG---RNLKTPLTVVSFYLSHQVYRGL-KRGRVIMAASDQMVWQGELAVEQAIRQ 292 A + + V+ F + + K + G++AV+ ++ Sbjct: 230 ALAAVAAVKSAGKEDQIKVIGFDGMQEARDAVTKEKSFAAVITQYPEDMGKIAVDTTLKI 289 Query: 293 LQGQSVSDNVSPPILVLTPK 312 L+G+ V N+ + T + Sbjct: 290 LKGEQVEKNIPVTPGIFTKE 309 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 44/333 (13%), Positives = 116/333 (34%), Gaps = 25/333 (7%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ ++ + L L M S + A T KA+ ++ + +L + +W+ Sbjct: 1 MKNIMKIFLLLTMFLLVSCGGAKEEAKTEDGNEPAKTEQKAEGQAEIAIVLKTLSNPFWV 60 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL---GSSTTSFPD 117 + G+++ A G+ + ++ A + Q I+ G +AI + T Sbjct: 61 EMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAIGIAPLSPVNTIPAI 120 Query: 118 LQKQVASLPVIELVNAID-------APQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVL 170 ++ + V+ + +D V + V ++G + Y++ + V Sbjct: 121 VEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAEYIIGKL-PEGGEVA 179 Query: 171 LMPGPDNAGGSKEMVEGFRAAIA-GSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVV 229 ++ G + +G A S ++V D D ++ +++++P + + Sbjct: 180 IIEGKSGNASGEFRRQGATEAFKADSKFKLVASQPADWDRSKALDVAANLIQKYPNLKAI 239 Query: 230 AGTAIAAEAAMGEGRN-----LKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGEL 284 A+G + + VV + + + G++ + G Sbjct: 240 YAC--NDTMALGAVQAVANAGKTGQILVVGTDGAPEARTSIDEGKLNATVAQDPAMIGAT 297 Query: 285 AVEQAIRQLQGQSV------SDNVSPPILVLTP 311 +++ I ++ + + V +++ Sbjct: 298 SLKILIEAIKDKPQISPDIEAKEVPVESNLISK 330 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 58/346 (16%), Positives = 122/346 (35%), Gaps = 37/346 (10%) Query: 2 RVLLFLLLSLFM----LPAFSADNLLRWHDAQHFTVQASTPLKA---------------- 41 R +L LL+L + L S A + KA Sbjct: 3 RKVLAALLTLTIAGASLAGCSGGKTGETTTAAQTQAETKAETKAEAKETAKESIAEVKEN 62 Query: 42 --KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 K +K ++ + ++ ++ ++E G +L V++A + Q + ++ Sbjct: 63 GGKEHYKFGFAATTMNNPFFHAIQEAIEEVVDENGDELIVIDAQ--NDAQKQISMVEDLL 120 Query: 100 QWGAEAILLGSSTT---SFPDLQKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPG 155 G + + L + Q A +PV+ + D V + + + G Sbjct: 121 TQGIDLLFLCPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDLVNTIIVSDNYYAGELVA 180 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNL 215 +++ + V ++ +A + GF+ G +IV G D + Sbjct: 181 EDMMKKL-PEGSKVCILT-SPSAEACIKRQNGFKDKADGY-FKIVSEIDGKGDTATSLGI 237 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEGRNL----KTPLTVVSFYLSHQVYRGLKRGRVI 271 +++L+ +P++ AI +A+G + L KT + V + + G + Sbjct: 238 AEDVLQGNPDLGAFY--AINDPSAIGCVQALESQKKTDVLVYGVDGQPMGKQAISEGTME 295 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 A+ + G+ +V A + L G+SV N+ P ++ N Sbjct: 296 ATAAQSPINIGKESVAAAYKILSGESVEKNILVPTFLIDKNNVTEY 341 >UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD Length = 343 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 46/300 (15%), Positives = 110/300 (36%), Gaps = 16/300 (5%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYG--VDLKVLEAGGYSQLATQQAQIDQCKQW 101 +L + ++ +W ++ G AA+R VD++ + + Q + Sbjct: 42 PIELAVVPKAVGFDFWETVRQGAVCAAKRAEGEVDVQWDGVAQETDVTGQVNLLQNFITQ 101 Query: 102 GAEAILLGSSTTSF---PDLQKQVASLPVIELVNAID-APQVKSRVGVPWFQMGYQPGRY 157 G + ++ ++ Q + V+ + + D P+ + Y Sbjct: 102 GVDGLVYAATDAKVLHDVTQQALDQGITVVNIDSGTDPQPENVPVFATDNVAAAERATEY 161 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLL 216 LV+ V +P + EGF+ + +P V++V +++ + Sbjct: 162 LVEQLGEDGGKVAFIPFQPGTATNDTRTEGFKNVLKENPQVKLVAEQSSESNYNRALQVT 221 Query: 217 QEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVI 271 +++L HP++D + A +G ++ + +V + + + ++ G V Sbjct: 222 EDILTAHPDLDAIY--AANEPGVLGAAEAVRSAGKAGEIIIVGWDTAPDELKAVREGVVS 279 Query: 272 MAASDQMVWQGELAVEQAIRQLQ-GQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRP 330 + G V A++ ++ G+ V +++T +N D ++R L P P Sbjct: 280 ALIAQNPFRMGYDGVNAAVKMIRTGEQVEGG-DTGAILVTRENIDDPEVQRVLDPSCENP 338 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 61/331 (18%), Positives = 129/331 (38%), Gaps = 29/331 (8%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 R+L+ + F+L A + Q + + + +++ P+ D + Sbjct: 6 RILIIFAATCFLLTACA---------------QKKSIVYKSKKYRIGLSIPASDDVFRNK 50 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP---DL 118 + M+ A+ D ++ A Q++QI AIL+ T Sbjct: 51 IINAMENEAKNL-PDTDLVVVNAKGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQ 109 Query: 119 QKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + +P+I + N + + + VG G Y V+ +GK NV+++ G N Sbjct: 110 IANDSGIPIISVNNFLKNQDDAAAYVGSDSITSGIMEAEYAVKQLNGKG-NVVILKGEPN 168 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 + + EGF+ + P ++I+D GD + + + ++ + D + Sbjct: 169 HETAIKRTEGFKQVLQNYPEIKIIDEQYGDWKRTLGMQITENWIKNGTKFDAILAN--ND 226 Query: 237 EAAMGEGRNLKTP-----LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 E A+G LK + V + + LK G + + QG A++ A + Sbjct: 227 EMAIGAIMALKENNLINNVFVGGIDATPDALKLLKEGSLKVTVFQNAAGQGSEAIKAAYK 286 Query: 292 QLQGQSVSDNVSPPILVLTPKNADREHIRRS 322 ++G+ ++ + P ++ P +AD+ ++S Sbjct: 287 LVKGEKINKKIFVPYELVVPNDADKYLGKQS 317 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 49/331 (14%), Positives = 115/331 (34%), Gaps = 27/331 (8%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 R+ + L L + + + P + + +L + ++ Sbjct: 4 RLFIALACLLTVFAGC------NKSENASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKV 57 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDL 118 + + ++ G D V+ G +A Q QI AI+L + Sbjct: 58 IGDNIVSEGKKRGYDAVVV--SGDKDVAKQSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQ 115 Query: 119 QKQVASLPVIELVNAI--DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 + A +PV + ++ +++ + G + + +++ + ++ Sbjct: 116 EANAAGIPVFTVDIPCHEPGVKIATQIATDNYGGGKEAAKAMIEALGEAGGKIAIL-HFK 174 Query: 177 NAGGSKEMVEGFRAAI------AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA 230 A + V+GFR I S V IV + ++ L+ +P++ + Sbjct: 175 QAESCQLRVKGFREIIDAHNAEGKSKVDIVAELESGGAKDQGYKAAEDTLQANPDLHGIF 234 Query: 231 GTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELA 285 AI AA+G L+ + +V F + + +K G++ G Sbjct: 235 --AINDPAALGARAALEKAGKTDQVVIVGFDGQPEGKQAIKEGKIYADPIQFPDKMGAQI 292 Query: 286 VEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 V+ I+Q +G+++ + P + +A++ Sbjct: 293 VDAIIQQSKGETLPPQMLIPTSLYKKADAEK 323 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 117/356 (32%), Gaps = 32/356 (8%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAK--------------RAWKLC 48 ++L + + M + A+T + + + Sbjct: 25 MILCVAMVATMAVGCGSGAKNSGSSNNDKVADATTEVSDALVEEMKSMVPDGDYSKYTIG 84 Query: 49 ALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL 108 +L + Y + + +Q+A G+ ++ ++ + Q I+ G + I+L Sbjct: 85 FCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTIIENYVSQGVDGIIL 144 Query: 109 GSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKS------RVGVPWFQMGYQPGRYLV 159 + + + + A++PVI L +D +K+ G + G G + Sbjct: 145 VPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTDNYVGGQLVGEEVA 204 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEM 219 + ++ G + GF AG V +V + + + +Q + Sbjct: 205 -QMYPDGCKTAILRGVQGQTNDDDRYNGFLDK-AGDVVDLVAEQHANWETDQGYTAIQNI 262 Query: 220 LERHPEIDVVAGTAIAAEAAMGEGRN-----LKTPLTVVSFYLSHQVYRGLKRGRVIMAA 274 ++ + ++ V+ +G + L + + S+ + + + G+ + Sbjct: 263 IQANKDLQVIYC--ENDLMGIGAYQAVDEAGLTDQIKIFSYDGVTEGLQYVVDGKFVSTC 320 Query: 275 SDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRP 330 + Q + G+L V + G+ + ++T +NA + P Sbjct: 321 AQQPIKMGKLGVANMAKIFAGKDAESYIDTGCELITSENAKQTLEETKKYTAEISP 376 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 233 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 114/279 (40%), Gaps = 13/279 (4%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + A + + +++ L M++AA GV+L V A L Q + ++ Sbjct: 26 ADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIA--NQDLNKQISDVEDFIVR 83 Query: 102 GAEAILLGSSTTSFPD---LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 G +AI+L + ++ + A +PVI + + + +V + V + G G + Sbjct: 84 GVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVEVDAHVATDNYYGGRIAGETM 143 Query: 159 VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQ 217 + +GK V ++ P ++ V GF+ A++ P + IV I G N Q Sbjct: 144 AKVLNGKG-QVAIIDYPV-VQSVRDRVAGFKEAVSKYPGIEIVAIQPG-ITRPEALNTAQ 200 Query: 218 EMLERHPEIDVVAGTAIAAEAAMGEG---RNLKTPLTVVSFYLSHQVYRGLKRGR-VIMA 273 +L+ HPE+D + G A A ++ + V+ F + +K+ + Sbjct: 201 NILQAHPEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIGFDGMEEARNAVKKEESFVAV 260 Query: 274 ASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPK 312 G L +E A+R ++G+ V + + T + Sbjct: 261 VCQYPGEMGRLGLETALRVIKGEKVEKEIPVLPGLFTKE 299 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 52/142 (36%), Gaps = 10/142 (7%) Query: 186 EGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEG-R 244 + A + V ++ + D+ Q + +++ + R +D + + + ++ +G + Sbjct: 48 QAMEKAADDNGVELIVSI-ANQDLNKQISDVEDFIVRG--VDAIVLSPVDSKGVVGAIIK 104 Query: 245 NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSP 304 + + V++ +S + V + + G +A E + L G+ + Sbjct: 105 AKRAGIPVITVDISAEGVE------VDAHVATDNYYGGRIAGETMAKVLNGKGQVAIIDY 158 Query: 305 PILVLTPKNADREHIRRSLSPG 326 P++ S PG Sbjct: 159 PVVQSVRDRVAGFKEAVSKYPG 180 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 54/295 (18%), Positives = 121/295 (41%), Gaps = 16/295 (5%) Query: 33 VQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQ 92 Q+S + A S+++ + ++++ M+ A+ GV+L ++A Q Sbjct: 20 NQSSDNESGGDNLVIGATMLSMQNEFIVNVSDAMEAKAKEMGVELITVDA--ERSALKQV 77 Query: 93 AQIDQCKQWGAEAILLGS--STTSFPDLQ-KQVASLPVIELVNAIDAPQVKSRVGVPWFQ 149 Q++ G +AI++ S P ++ A +P+I + + + + + VG + Sbjct: 78 EQVESFIGQGVDAIIMNPAEVEASSPAIKLAMDAKIPIINVNSET-SAKPTAFVGSDDTE 136 Query: 150 MGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDND 208 +Y+ + GK N+L+M G + G + + +P ++++ G+ D Sbjct: 137 SARIAMKYIAEKLGGKG-NILMMHGFMGQAAQIKRDNGAKDILKANPGLKLLAEQSGEWD 195 Query: 209 IEIQRNLLQEMLERHPE-IDVVAGTAIAAEAAMGEGRNL-----KTPLTVVSFYLSHQVY 262 +L + ++ + + I+ + A E MG + L K + VVS Sbjct: 196 RAKGMSLTENWIQSYGDKINAIF--AQNDEMGMGAVKALEAAGLKGKVLVVSVDAIPDAL 253 Query: 263 RGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 + +K+G + QG A+E A++ + ++ V P ++ N + Sbjct: 254 QAVKKGTLDATVFQNAKEQGGKAIETAVKAAKKEAFEKEVLIPFQLVDKGNVEGF 308 >UniRef50_C6JCU3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Ruminococcus RepID=C6JCU3_9FIRM Length = 325 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 123/330 (37%), Gaps = 24/330 (7%) Query: 6 FLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYP--SLKDSYWLSLN 63 + +++ M A + +A + L + + +W S+ Sbjct: 8 IITVAILMAAAVVIFAGILKPEATQT-----------KKCSLIYIPKIRDNTNDFWTSVI 56 Query: 64 YGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST---TSFPDLQK 120 G + AA Y DL++L + Q + + + +AIL S+ + + Sbjct: 57 SGCKMAAEEYESDLEILAPDKEENIEEQNKLLKKAIEQKPDAILFSPSSMDSSDELLKEA 116 Query: 121 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG 180 + + + + + V G G Y + K + ++ Sbjct: 117 KEKGIRITYIDSYTKEKLQDLTVATDNVNAGRMLGEY-ARKLIDKDSKIAIVSHVKGVST 175 Query: 181 SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 + E +GFR + IVDI ++ E L QE++ ++P+++++AG + +A+ Sbjct: 176 AVEREQGFREGLGDYADNIVDIVYCNSLYEKSYELAQELMRKYPDLELIAG--MNEYSAV 233 Query: 241 GEGRNL-----KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQG 295 G GR + K + VV S + ++ G + G + VE+ I L G Sbjct: 234 GVGRAVSDAGAKDKIAVVGVDCSQEAINLMEMGVYKGIIVQKAFRMGYIGVEETIHMLNG 293 Query: 296 QSVSDNVSPPILVLTPKNADREHIRRSLSP 325 +V N+ ++TP+N I R + P Sbjct: 294 DAVEKNIDSGCELVTPENMYNSDIERLIFP 323 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 68/334 (20%), Positives = 135/334 (40%), Gaps = 24/334 (7%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAK-----------RAWKLCA 49 M+ +L LLS +L + + +A QA +A + + Sbjct: 1 MKKMLACLLSFTILASTLTGCTVGASNATAAENQAPAETQASNEPAQAADPSVKTYNFVF 60 Query: 50 LYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL 108 + S++ S+ LS+ G + AA +++K + + Q ++Q GA+AIL+ Sbjct: 61 IVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQLVEQAITDGADAILI 120 Query: 109 GSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK 165 + ++ + A +P+ V + +GV + +GY+ G L + G Sbjct: 121 TPADSTGIVPAIEKANAAGIPIATPNTKAYGGDVLTWIGVDNYTVGYELGTALCEALEGT 180 Query: 166 PLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHP 224 V+L+ G S E V+G+ A P + ++D D + E +++ L+R+P Sbjct: 181 G-KVVLIEGTAGNSTSTERVDGYLDAFKNYPGIELLDSQPADFNREKGMTVMENFLQRYP 239 Query: 225 EIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMV 279 EID V +I + MG K + V+F + + + G +++ + + Sbjct: 240 EIDGV--GSINKDMTMGAIEACKAVGRDKEMVQVTFDVDNDCLDAIDAGDILITGAQEEK 297 Query: 280 WQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 Q A+ + G V+ P+ ++T N Sbjct: 298 SQIANAIYACLLACNGYKVAPEQYIPMTLVTKDN 331 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 114/328 (34%), Gaps = 18/328 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ + +L + + A + K + + + + Sbjct: 1 MKKRMLSILLVAAMAAALLLGCSSGTEGSDSKGDDKKASKKDGGYTIGCTVYYMT-EFVT 59 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--PDL 118 + GM++ A G DL +L+A Q QI+ + I++ + + P + Sbjct: 60 LMTEGMEKKAEELGCDLVMLDAQ--QDAQNQITQIENLIAQKVDVIIVAAVDSDAILPAI 117 Query: 119 QK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + A +P++ + + + VG G + + G+ NV+++ GP Sbjct: 118 EMCDDAGIPLVGVNMLFNTEEPYHYVGPDDVLAGELEMQNAIDEIGGEG-NVVILEGPIG 176 Query: 178 AGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERH-PEIDVVAGTAI 234 + +EG + + + ++ + E L++ LE +ID + A Sbjct: 177 QSAQIQRLEGNQNILDKYEGKINVLADQTANWSREEALTLVENWLETFSGKIDAIV--AH 234 Query: 235 AAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 E A+G + L+ + V +K G ++ +G AV++A Sbjct: 235 NDEMALGAIQALEAAGLTDKIVVTGVDAILDGCNAVKDGTLLGTVYQDAGLEGSEAVQKA 294 Query: 290 IRQLQGQSVSDNV-SPPILVLTPKNADR 316 L+G+ + + +T N D Sbjct: 295 YDVLEGKVTEKELSYIDMKWITKDNVDE 322 >UniRef50_A4IT20 ABC transporter sugar-binding protein n=9 Tax=Bacillaceae RepID=A4IT20_GEOTN Length = 337 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 121/323 (37%), Gaps = 15/323 (4%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFT-VQASTPLKAKRAWKLCALYPSLKDSYWL 60 R+ +SLF+ A S W+ + + T KAK + + L + YW Sbjct: 7 RLFYAGGISLFIGSA-SLTTYCAWNVYMYSGVGEEKTLAKAKDTYHFVLVPEELDNDYWR 65 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL---LGSSTTSFPD 117 + G + AAR VDL+ + + + + + + I+ L + Sbjct: 66 LVEKGAKAAARELDVDLEYIGPR-QANIDEHLRILKKAAAAKVDGIITQGLTEAEFVPVI 124 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + ++PV+ + +G + G+ GR LV+ G +NV ++ G Sbjct: 125 NEIVDKNIPVLTIDTDAPTSWRVGYIGTDNYYAGFIAGRALVEDTQGM-VNVAIITGSLT 183 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 A ++ V GFR A+ +RIV + +L++HPE++ GT+ Sbjct: 184 AVHQQQRVRGFRDAVKNEKRIRIVAVEESHITRVQAAEKTYTILKKHPEVNAFYGTSALD 243 Query: 237 EAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 A+G R ++ ++ F + L++G + + G AV+ Sbjct: 244 --AIGIARVVEQFHREQETYIIGFDTLPETIEYLQKGTIEATVVQEPYEMGYRAVKMMAD 301 Query: 292 QLQGQSVSDNVSPPILVLTPKNA 314 + G V + V+ ++ Sbjct: 302 IVAGHDVPAITNTETKVIRKEDL 324 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 61/338 (18%), Positives = 121/338 (35%), Gaps = 27/338 (7%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 + + L ++ A T +AK K+ L++ YW S Sbjct: 1 MFSLSAACVLALAGCASGAEQAGDVAADGGE---TTFEAKDPLKIGYSVYDLQNPYWQSY 57 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQV 122 G++ A G+++ + A S Q + G A+++ S Sbjct: 58 AAGVRAGAEEAGIEVVI--ADQKSSQQEQVSGSLDLINQGISALIITPVQPSALPSTIDA 115 Query: 123 A---SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPL--NVLLMPGPDN 177 A +PV+ + + ++ G ++V+ G P V ++ Sbjct: 116 AHGEKIPVVVADIGTEGD-YDGYILSNNYEGGRLAAEHVVEKLGGTPGPHQVGVIELHAG 174 Query: 178 AGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 + +E V GF + IV G++ ++ Q+ML +PE+DV+ A Sbjct: 175 SVVGEERVSGFVDRLGEEENFEIVSSLDGNDTVDGGFTAAQDMLSANPELDVIY--AAND 232 Query: 237 EAAMGEGRNLK-------TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 ++A+G R ++ T++ F S +++G + + QG+ AVE A Sbjct: 233 DSAVGASRAMETAGVSVANGFTLIGFDGSDPALDLIEQGVMSGTVAQDPFGQGQKAVETA 292 Query: 290 IRQLQGQSVS------DNVSPPILVLTPKNADREHIRR 321 + L G+ + P+ ++T +N R Sbjct: 293 LALLNGEDPGYSDEATKTIYFPVEMVTAENVAEFRASR 330 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 109/291 (37%), Gaps = 18/291 (6%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 A ++++ + D++ + G++EAAR+ V L+ +A G + Q Q+ Sbjct: 19 AAASYRIGVTIARVDDNFMTYVRSGLEEAARKENVQLQFEDAQG--DVVRQINQVQGFLS 76 Query: 101 WGAEAILLGSSTTSFPD---LQKQVASLPVIELVNAIDA---PQVKSRVGVPWFQMGYQP 154 +A+++ TS A +P++ + D P+ + V + G Sbjct: 77 QKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVLPKGVTTVASNDIEAGQLQ 136 Query: 155 GRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQR 213 RYL + GK + L+ G + + EG + + P + IV+ + Sbjct: 137 MRYLAEKMGGKG-TIALIMGDLAQNSTHDRSEGVKQVLKDYPGITIVEQQTAEWQRNKGM 195 Query: 214 NLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL------KTPLTVVSFYLSHQVYRGLKR 267 +L L D + E A+G L K + +V +KR Sbjct: 196 DLTSNWLLAGRTFDAIVAN--NDEMAIGAAMALQQAGKAKGEVAIVGIDGLPDGLAAIKR 253 Query: 268 GRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 G + + Q A++ AI+ ++G+ V V P ++TP+ Sbjct: 254 GMLAASVFQDPKAQATTALQSAIKMIKGEPVDAEVWVPFQLITPEQVAVFE 304 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 230 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 58/330 (17%), Positives = 115/330 (34%), Gaps = 18/330 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ +L++ +L + + ST ++ + +L D + Sbjct: 1 MKKNKTILIAFSILMSLLLAACGSGGETSGDGNGESTGDSGQK--VIGVSISNL-DEFLT 57 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK 120 + M+E A Y D + + + + Q AQ++ +AI++ T+ Sbjct: 58 YMQDAMKEEAANY-PDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIV 116 Query: 121 Q---VASLPVIELVNAIDA-PQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 A +P+I D Q + VG Q G + + + + N+ +M G Sbjct: 117 NMVNDAGIPIIIANRTFDGVDQATAFVGSESIQSGLLQMEEVAKLLNNEG-NIAIMDGEL 175 Query: 177 NAGGSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 EG + I + +V D L++ L EID V Sbjct: 176 GHEAQIMRTEGNKQIIEEHDGLEVVLQGTAKFDRSEGMRLMENWLNSGTEIDAVVAN--N 233 Query: 236 AEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 E A+G L+ + V + +K G++ + QG +V+ A+ Sbjct: 234 DEMALGAILALEAVGKLDDVIVAGIDATPAALEAMKEGKLDVTVFQDAKGQGATSVKVAV 293 Query: 291 RQLQGQSVSDNVSPPILVLTPKNADREHIR 320 + G+ V + P ++TP+N + + Sbjct: 294 QAANGEDVE-DAMIPYELVTPENVEEYEAK 322 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 230 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 125/335 (37%), Gaps = 23/335 (6%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ ++FL L ++ + + + +T + K+ L P Y++ Sbjct: 1 MKKIIFLFTILLLIMSCG-----NKQETKAEGAAGNTAETKEAKKKIGVLIPGPVG-YFV 54 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP---D 117 ++ G+ +AA V++ +AG + Q +Q++ + I + + ++ Sbjct: 55 AVREGIDKAAAENNVEITYSDAG--WDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAV 112 Query: 118 LQKQVASLPVIELVNAIDA------PQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLL 171 A++P++ NAI + + VG + G G K V+L Sbjct: 113 RMANEANIPILAFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEKGGKVVL 172 Query: 172 MPGPDNAGGSKEMVEGFRAAIA-GSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA 230 + G +G A+ +V + + E +++++++++ IDV+ Sbjct: 173 IEGRPGTSPQINRRKGVMEALDTNKNFEVVYTQTSNWEKEQALKIVEDLIQKNQTIDVII 232 Query: 231 G----TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 +AI A A+ E LK + V+ S + +K G + V +G A+ Sbjct: 233 AQDDNSAIGAGMALKEAN-LKDKILVIGLGGSTEGLNAVKSGLIDGTTYMSAVEEGYTAI 291 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 A++ L G+ V + + N + Sbjct: 292 TAAVKYLNGEKVEPVTQMKQVEVNKSNVESFKGEW 326 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 106/284 (37%), Gaps = 15/284 (5%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 + + + S +D + ++N ++ Y D +VL Q A I+ Sbjct: 24 ERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQADAEVLIRSVKDDTPKQIADIEWFI 82 Query: 100 QWGAEAILLGSSTTSF--PDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 + + +++ + + P ++K +PVI + I + VG +Q+G + G Sbjct: 83 EQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATESYTAYVGANNYQIGKEAGL 142 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 Y + GK N+ + G + E +GF A+ +P V+IV G+ + Sbjct: 143 YAIGVLKGKG-NIAEVRGTKGSTSDAERHKGFVDALKNAPEVQIVAETWGNFLQADAKTQ 201 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMG---EGRNLKTPLT-VVSFYLSHQ-VYRGLKRGRV 270 +Q++ + HP ID+V A+ A G + ++ Q + ++ Sbjct: 202 MQQIFQEHPHIDLVF--AMNDPMAAGTHEAAMQFNGKIPFIIGVDALQQVGIQNIENSVQ 259 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 + GE +E A++ L Q V+ N Sbjct: 260 DASFIYPTG--GEKVIELAMKILHKQPFQRENILNTTVVDKSNV 301 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 52/323 (16%), Positives = 116/323 (35%), Gaps = 14/323 (4%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M + + L + + + + + + + + ++ Sbjct: 10 MLIFTAITLIGVSVLLGGCGSKQGNTQTGTSSGTTTQNTEKSGEKVIGVSLLTREHVFYN 69 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 + +QE A+ Y +++A Q AQ+ +AI+L + ++ Sbjct: 70 LIEKAIQEKAQGYKFKPIIMDAS--QDSNKQLAQVQDFITQKVDAIVLAPTASAGIAPAV 127 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + A +PV + + VKS V + G +Y + V ++ + Sbjct: 128 DLAKKAGIPVFTIDIKAEGD-VKSHVATDNYAGGKLAAKYAAEKVLNGKGKVAIITYSE- 185 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 + +GF+ A+A P +++VD+ E NL Q++L + P++D++ A+ Sbjct: 186 VQSCVDREKGFKDALAEYPNIKVVDVENCSGSAEKAANLTQDILLKFPDLDLIF--AVGD 243 Query: 237 EAAMGE---GRNLKTPLTVVSFYLSHQVYRGLKR-GRVIMAASDQMVWQGELAVEQAIRQ 292 A+G + + V+ F + + + +K G + G ++ Sbjct: 244 PFAVGAVSTIKAAGRNVKVIGFDGNPEAIQEIKNHGLWVADVVQHPDQIGGKVIDLIADY 303 Query: 293 LQGQSVSDNVSPPILVLTPKNAD 315 G+SV V P ++ NA Sbjct: 304 FNGKSVPPQVLIPPTIVDASNAK 326 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 122/328 (37%), Gaps = 30/328 (9%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + + LL + + +A + + + K + + +L + + ++ Sbjct: 4 KAISILLTAAMGVSVLAAGTVT------------VSAAEKKDKYVIGMSQCNLGEPWRVA 51 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS---FPDL 118 +N + AA ++ + +V+ A + Q A I+ Q G + I+ + + Sbjct: 52 MNDQIAMAAEKH-PEFEVIFADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVS 110 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 A +PVI L ID + +G MG G Y+ V + G + Sbjct: 111 AAYDAGIPVILLDRKIDGDKYTQFIGADNVDMGRIAGEYIADTLLPDGGKVCEIKGLEGT 170 Query: 179 GGSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 G + GFR I + + IV + D E + +EML+ + EID+ A+ Sbjct: 171 SGGIDRDNGFREGIKKNDKIEIVAVNNADWLREKAITVAEEMLQTNDEIDLFL--ALNDP 228 Query: 238 AAMGEGRNLK-----TPLTVVSFYLSH---QVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 A G K + V F R + GR+ M G A+E A Sbjct: 229 MAEGAYIAAKNAGREGDILFVGFDGLPTPDGGIRSVMDGRLSMT--QVYPTGGTEAIESA 286 Query: 290 IRQL-QGQSVSDNVSPPILVLTPKNADR 316 + L +G+ + ++ ++TP NA+ Sbjct: 287 YQLLVEGKELDKTLTLTSEIVTPDNAEE 314 >UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ Length = 339 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 54/304 (17%), Positives = 107/304 (35%), Gaps = 12/304 (3%) Query: 37 TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 P K + + + S YWL++ G AA+++GV + + LA Q ++ Sbjct: 36 VPAKPAKHYHFTLITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAGQIGMVN 95 Query: 97 QCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 G + I+L + P +PV+ + + + + Sbjct: 96 NAVTGGTDGIILAAQNPQALLKPVKSALAHHIPVVTVDSGLSPNISDCFLATSNVGAAAA 155 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP--VRIVDIALGDNDIEI 211 +Y G ++ A +GF + P ++ I +ND+ Sbjct: 156 LAKYTADHLMGGKGQYAIVDFNHTASTGIARPKGFMLGMKSYPHIKKMGPIQYSNNDVSA 215 Query: 212 QRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT---PLTVVSFYLSHQVYRGLKRG 268 + ML ++P + V+ G AA+G ++ + VV F +K G Sbjct: 216 GLRIATTMLTQYPHLKVIFG--ANDRAALGPAEAVQRAHAKVKVVGFDADLGEIALVKAG 273 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSL--SPG 326 + + G AV + +L G+++ ++ P +LTPKN ++ Sbjct: 274 IIQASILQSPYDMGYYAVVALLDKLDGKTLPKRINTPYFLLTPKNLGSSQATAAIRQYAP 333 Query: 327 GFRP 330 + P Sbjct: 334 KYNP 337 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 116/328 (35%), Gaps = 19/328 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAK-RAWKLCALYPSLKDSYW 59 +R+L +LL A + +A K + +WK+ +++ Y+ Sbjct: 16 LRILSLILLCALTFTACKKNVGTPEDNAASKDENTEEKDKDEQESWKIGFSGIDMENPYF 75 Query: 60 LSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPD 117 L+L ++E +L V + + Q +QI + G AI+L P Sbjct: 76 LTLESAIKEEVDGKNCELIVKDPKTDPDM--QASQIQEMIDEGINAIILSPVDWEKITPS 133 Query: 118 LQK-QVASLPVIELVNAIDA-PQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 L+ + A + ++ + + V + +G + G G L++ V ++ Sbjct: 134 LEALKEADVKIVNVDTQVKEMDYVDAYIGSDNYNAGVLCGEDLIKRC-PDGGKVAILEC- 191 Query: 176 DNAGGSKEMVEGFRAAIAG--SPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA 233 E + GF +A + IV + + Q++L + +I + Sbjct: 192 PTQNSVNERITGFEETLAKAENGFEIVAREDTSGEFQKSLEAAQKILSENSDIVAIMC-- 249 Query: 234 IAAEAAMGEGRNL----KTPLTVVSFYLSHQVYRGLK--RGRVIMAASDQMVWQGELAVE 287 + A+G + + + + S + + LK ++ + + G+ A Sbjct: 250 GNDQMAVGAKTAMNVAEQGQILIYGVDGSPDIKKELKKTENQIAGTVAQSPISMGKDAAN 309 Query: 288 QAIRQLQGQSVSDNVSPPILVLTPKNAD 315 + L G+ + + ++ +N D Sbjct: 310 TVLNILNGKDYEKEIKENVFMINQENVD 337 >UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Gammaproteobacteria RepID=C6V848_ECOBD Length = 357 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 49/299 (16%), Positives = 108/299 (36%), Gaps = 9/299 (3%) Query: 37 TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 + + L + + +W ++ G + AA+ G + +Q+A Q ++ Sbjct: 58 SSSALAKDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGDKTSYVGPADETQIAEQIQLVE 117 Query: 97 QCKQWGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 +LL + + + V+ + I++ S V + G Q Sbjct: 118 NAMAQKPNGLLLAALDANALAPLVETANSRGIKVVTFDSGINSDIPVSFVATNNRKAGAQ 177 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEI 211 L + K V ++ + E EGF + ++++ + D D + Sbjct: 178 AADALASQVNNKG-KVGIIAHVAGTSSAIERSEGFMERMKEKYPDIKVLPVQYSDGDPQK 236 Query: 212 QRNLLQEMLERHPEIDVVAGTAIAAEAAMGEG---RNLKTPLTVVSFYLSHQVYRGLKRG 268 + +M++ +P++ + GT + + +NLK + V+ F + + LK G Sbjct: 237 AMDKTIDMIQANPDLAGIYGTNEGSTLGVANAIDSQNLKGKVKVIGFDSTEAIINFLKNG 296 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGG 327 + G ++ L GQ+V + P+ + +N + I + L P G Sbjct: 297 VIQGFVVQDAYQIGYQGIKTLNAALSGQAVEKEIDIPVKFVNAENINTPEIDKLLHPFG 355 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 61/320 (19%), Positives = 122/320 (38%), Gaps = 24/320 (7%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 R+++ ++ M+ +A + + +L+ ++ Sbjct: 8 RIVIATGVAATMVVGATACGRGGNG----------AKTADGKQITIGLAVANLQADFFNQ 57 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDL 118 + + A++ G+ + V +A G ATQ QI AI+ + + P Sbjct: 58 IKQSVTAEAKKKGIKVIVSDARG--DAATQVNQIQDFISRQVSAIIYIPAGATAAGVPVK 115 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 A +PV+ + KS + G Y+V+ + GK + ++ G Sbjct: 116 AANRAKIPVVTVDRNPPGEPGKSFIASDSVAAARTLGNYVVKESGGKG-QLAILQGQIGT 174 Query: 179 GGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 + +GF A+ +P +++V D + ++ Q+ML+ HP ID++ G A Sbjct: 175 TPQVDRQKGFGQALKNAPGIKVVSQQPADWAQDKAYSVSQDMLQAHPGIDILWGQA--DA 232 Query: 238 AAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 A+G + +K +V F + ++RG V Q G ++V A+ Sbjct: 233 MALGAAQAVKASGSKKKHLIVGFDGDIAGLKAVRRGTVDATMVQQTRKMGRMSVNTAVDI 292 Query: 293 LQGQSVSDNVSPPILVLTPK 312 ++G+ V P +LT K Sbjct: 293 IKGKKVPAQQLQPAFLLTSK 312 >UniRef50_C2KRR4 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Actinomycetaceae RepID=C2KRR4_9ACTO Length = 326 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 50/333 (15%), Positives = 113/333 (33%), Gaps = 23/333 (6%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 +VL ++ L A + + + K+ + + ++W S Sbjct: 6 KVLALGAIACLSLTACGSSPASSDGKSADAKSNS---------KKIILVSKGFQHTFWQS 56 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP---DL 118 + G E + G +++ + + + Q Q+ AI L + + Sbjct: 57 VKKGALEKGKELGYEVEFIGPKNETAVTEQLDQLKNALNAKPAAIGLAALDSKAAEPILQ 116 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 Q + A +PVI + +D+ + V G + L Q K V ++ Sbjct: 117 QIKNAGIPVIAFDSGVDSDIPLTTVQTDNRTAGAKAAEKLAQLMGNKG-TVGIVCHGQAT 175 Query: 179 GGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 K GF+ + ++++ D + + + +++ + ++ + G+ Sbjct: 176 TTGKGRCFGFQDWMKEHAPDIKLLQEQWAD-ERGKAADAAKAIVKSNTDVTAMYGS--NE 232 Query: 237 EAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 A G + +K +T+V F +K G A + V G V A + Sbjct: 233 VTAAGVLQGVKEAGKMGQITIVGFDSGKAQIDAIKSGDEAGAITQAPVKMGAETVAAADK 292 Query: 292 QLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 ++G+S+ + N D I+ ++ Sbjct: 293 AIKGESLEKIIDSGFAWYDKSNIDTPEIQSNIY 325 >UniRef50_C6J484 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J484_9BACL Length = 329 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 134/329 (40%), Gaps = 24/329 (7%) Query: 6 FLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYG 65 LL++ ++ S+ + ++ + + + + YW + G Sbjct: 13 ILLMAGALITLLSSCGGPG------------SGADHQQIYDVDMIVKMDRGDYWKTTKLG 60 Query: 66 MQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVA-- 123 + AA+ + V L + + + Q +++ + +AI+L +S Sbjct: 61 AEVAAKEFNVRLNFVAPENENDVEGQIRLMEEAIERRPDAIILAASDYEALGQVTDRTSY 120 Query: 124 -SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSK 182 +PVI + + + + +VK+ VG ++ G + LV + ++ A + Sbjct: 121 YDIPVISMDSEVASTKVKTFVGTNNYEAGQKAAERLVDLTGP-VSEIGIINFVKGARNAN 179 Query: 183 EMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG 241 + EGF +A P V +VDI +D + L +ML+R P ++ + +++AE+++G Sbjct: 180 QREEGFLDYVARFPDVHVVDIQYCGSDEYLAYKLTADMLKRFPNLNGIV--SLSAESSIG 237 Query: 242 EGRNL-----KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQ 296 GR + + +++F ++ L+ +V G +AV A++ +G+ Sbjct: 238 AGRAVDELGYGGKVKMIAFDNPPEMLELLQEEKVQAMVVQNPFNNGYMAVAAAVQAARGE 297 Query: 297 SVSDNVSPPILVLTPKNADREHIRRSLSP 325 + D + ++ N ++ L P Sbjct: 298 KLEDRIPTDTKLIDLNNMLWPENQKLLFP 326 >UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium RepID=D2Q6W7_9BIFI Length = 327 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 45/336 (13%), Positives = 119/336 (35%), Gaps = 22/336 (6%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ ++ L+ + + + + +++ + S+W+ Sbjct: 1 MKKSKYIALAAVAAFTVAPLSACGAGQSNGSE---------SKNYEIAMVAKGFSQSFWV 51 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 S++ G +AA +YG + SQ+ Q + +A+ + + Sbjct: 52 SVHQGADDAAAKYGATVTFNGPDNDSQVDKQADMVQNAINKSPDAVAIAPLDEAALTPAV 111 Query: 118 LQKQVASLPVIELVN--AIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 + AS+P+ +A + S V ++G L+ +GK ++ Sbjct: 112 QSAKSASIPLFAFDTAFETNADAITSTVKTSNREVGKVAAENLIALLNGKG-KYAVIAHS 170 Query: 176 DNAGGSKEMVEGFRAAIAGS--PVRIV-DIALGDNDIEIQRNLLQEMLERHPEIDVVAGT 232 S E +GF + + + +V ++ + D +++ +L+ +P++D + T Sbjct: 171 QTDATSTERRDGFLDYMKKNAPDMEMVGEVQYSNADQAKAQDIASAILQANPDLDAIFAT 230 Query: 233 A----IAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 + A + + +V + ++ G + + S G +E Sbjct: 231 NEATVVGAATPVESALKSGHKVLLVGVDSGKAQQQYIRDGVISGSVSQNPYQIGYKTIEN 290 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 A++ L G+ + + N D + +++++ Sbjct: 291 AVKSLNGEKIDKVIDSGCFWYNADNIDDDDVQQAMY 326 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 54/285 (18%), Positives = 119/285 (41%), Gaps = 13/285 (4%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 A+ K+ ++ + +++ G ++ A + D+ ++ G + + Q A ++ Sbjct: 29 AQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLIVTDGNNDASKQVADVESLIA 88 Query: 101 WGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRY 157 G + +++ T + A + V+ L ++ P V VG +G G + Sbjct: 89 QGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTP-VTVHVGGENLPLGVGAGEF 147 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLL 216 L + +GK N++ + G A + + +GF AIA P +++V D + + Sbjct: 148 LAKKLNGKG-NIIELQGTAGASATIDRNKGFAEAIAKHPDMKVVASQNCDYTRDKAVKFM 206 Query: 217 QEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVI 271 ++M++R + A A E A+G + L+ + VV + +K+G++ Sbjct: 207 EDMVQRFGPGQIQAVYAHNDEMALGAIQVLEAAGRLNEVAVVGIDGQETAFEAVKQGKLA 266 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 V +E A + +G+ V + ++ P + +TP N Sbjct: 267 ATFVYPFV--APEGIETAYKVAKGEEVPETITLPTVSVTPDNIAD 309 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 64/359 (17%), Positives = 134/359 (37%), Gaps = 43/359 (11%) Query: 1 MRVLLFLLLSLFM----LPAFSADNLLRWHDAQHFTVQAS-------------------- 36 M+ L+ LL +F+ A S N + Q + Sbjct: 1 MKKLVKLLTLVFVTSVLFTACSDKNKETGEGNKENKPQQTEAFNPDSDPNGVEFSEIREK 60 Query: 37 --TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQ---EAARRYGVD--LKVLEAGGYSQLA 89 K + KL ++ + ++ YW +L G + + + G + L + A G Sbjct: 61 LGAMPKVEGEIKLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQ 120 Query: 90 TQQAQIDQCKQWGAEAILLGSSTT--SFPDLQKQVAS-LPVIELVNAIDAPQVKSRVGVP 146 Q + ++ A+LL + P ++K + +PVI + + I VG Sbjct: 121 GQLSIVEDMINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVNDGI-IKNADIFVGPK 179 Query: 147 WFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIAL 204 G ++ + G+ V ++ G A +++ GF + + V+IV+ Sbjct: 180 AIMNGELAAEWISKKIGGEG-EVAIVIGMPKAFAARQRTLGFENWMKSNAAGVKIVEKQN 238 Query: 205 GDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG---EGRNLKTPLTVVSFYLSHQV 261 D D ++L + ++++P + + A+G K + VV + Sbjct: 239 ADWDRAKAKDLAEIWIKKYPNLKAIFCN--NDVMALGVQEAVNASKRDILVVGVDGIKEA 296 Query: 262 YRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 Y +++G + +++G++AVE A+R L GQ + + P ++ N + + Sbjct: 297 YESIRKGEMDATVDSFPLYKGQIAVEMALRSLGGQQLPRVIWTPQALIDSTNVNEPSEK 355 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 106/284 (37%), Gaps = 15/284 (5%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 + + + S +D + ++N ++ Y + ++L Q A I+ Sbjct: 33 ERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQANTELLIRSVKDDTPKQIADIEWFI 91 Query: 100 QWGAEAILLGSSTTSF--PDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 + + +++ + + P ++K +PVI + I + VG +Q+G + G Sbjct: 92 EQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATESYTAYVGANNYQIGKEAGH 151 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 Y + GK N+ + G + E +GF A+ +P VRIV G+ + Sbjct: 152 YAIGILKGKG-NIAEVRGTKGSTSDAERHKGFVDALNNAPEVRIVAETWGNFLKADAKVQ 210 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMG---EGRNLKTPLT-VVSFYL-SHQVYRGLKRGRV 270 +Q++ ++HP ID+V A+ A G + ++ + ++ Sbjct: 211 MQQLFQQHPNIDLVF--AMNDPMAAGTHEAAMQFNGKIPFIIGVDALQQEGISNIENNVQ 268 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 + GE ++ A++ L Q V+ N Sbjct: 269 DASFIYPTG--GEKVIDLAMKILHKQPFERENILNTAVVDKSNV 310 >UniRef50_C6CXU6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXU6_PAESJ Length = 330 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 135/326 (41%), Gaps = 14/326 (4%) Query: 1 MRVLLFLLLSLFML-PAFSADNLLRWHDAQHFTVQ-ASTPLKAKRAWKLCALYPSLKDSY 58 +R FL + LF+L AFS+ + H++ +S + K L + + Y Sbjct: 2 LRTNKFLYIILFVLFIAFSSCAVYYAGKGMHYSNNISSGNVIDKPQLHLVLISQEYDNPY 61 Query: 59 WLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FP 116 W + G +EAA++ G++L+ L + + ++ + I+ + P Sbjct: 62 WRLVQQGAREAAQQKGIELEYLGP-ARADVKEHIKILEMAIASKVDGIITQGLEENEFTP 120 Query: 117 DL-QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 + + +P+I + + + + VG + GY GR L+ + G+ V L+ G Sbjct: 121 IINEAARMGIPIITVDSDAPHSKRVAYVGTDNYAAGYMAGRELIAKSAGR-AEVALITGS 179 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 A K+ V GF+ A+ P + I+DIA + + +++PEID GT+ Sbjct: 180 FTASNQKDRVRGFKDAVKTYPGIHIIDIAESNISRIQSAASAYTLAQKYPEIDTFVGTSA 239 Query: 235 AAEAAMGE------GRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 + + LKTP+ +++F + + +G + Q G +V Sbjct: 240 LDGLGIAQMLKEMGSETLKTPIRIIAFDDLPETLTLINQGVIESTIVQQPFIMGRESVNL 299 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNA 314 + L+G+ + + + V+ ++ Sbjct: 300 LMDYLKGEKIVTVYNTDVKVIHREDL 325 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 108/300 (36%), Gaps = 16/300 (5%) Query: 35 ASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQA 93 + A + +L + + L M+ + Y V L + +A S Q + Sbjct: 36 PADTEAAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSD--KQAS 93 Query: 94 QIDQCKQWGAEAILLGSSTTSFPDLQKQ---VASLPVIELVNAIDAPQVKSRVGVPWFQM 150 Q+D G +A+++ + A +PVI + Q + VG Sbjct: 94 QLDSFVAQGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQVWVGSSNENG 153 Query: 151 GYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDI 209 G +Y+ + GK + ++ GP A + G+ + P + IV G+ Sbjct: 154 GEIEMKYVAEKLGGKG-KIAVLRGPLGAFAEQGRFAGYETVLKDYPDIEIVFDQTGNWQR 212 Query: 210 EIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRN-----LKTPLTVVSFYLSHQVYRG 264 E L++ +L E+D + A+G K +T+ Sbjct: 213 EEAMALIENLLTAGTELDAIVC--QNDGMALGALEAVKAAGKKDQITITGIDAIVDALDS 270 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 +K G + + QG A++ A++ +G++V + P ++T N D + R L Sbjct: 271 IKAGELDATCFQDAIGQGTNALDMAVKAARGETVER-MDIPFELVTKDNVDGYYDRIKLP 329 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 123/329 (37%), Gaps = 18/329 (5%) Query: 2 RVLLFLL--LSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYW 59 RV+ LL L++ L A +++ L +A + K + + +L + +W Sbjct: 4 RVVSILLTGLAVLSLAACTSNGLEAASATNDNAKEAEAGTEKKEGISVYWVGKTLNNPWW 63 Query: 60 LSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---P 116 +S++ Q+ A GVDL + L Q + I+ + A+AI++ ++++ Sbjct: 64 ISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKADAIVVSAASSDGVIPA 123 Query: 117 DLQKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 + + A + ++ I D + + VG Y+ G+Y+ + G+ V ++ G Sbjct: 124 IKKAREAGIKIVNFDTRISDTSVIDAFVGGDDVAGAYKAGKYICEQLGGEG-EVAIITGL 182 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 + GF A A P +++V + + ++ +L +P + + Sbjct: 183 MEQSTGVDRHAGFMQACAEYPGIKVVAEQGAEWSSDKAADVTTNILTANPNVKAIFAC-- 240 Query: 235 AAEAAMGEGR------NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 + A+G L +V + G + S + +G + V+ Sbjct: 241 NDQMAVGMVNAAKAAGKKADDLILVGYDGILDAVNMTMDGDLDAFVSLPNLDEGAMGVKL 300 Query: 289 AIRQLQGQS--VSDNVSPPILVLTPKNAD 315 A + + ++T + D Sbjct: 301 ATALVMNSDYHYDREILYDCTLVTGEFVD 329 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 57/302 (18%), Positives = 115/302 (38%), Gaps = 23/302 (7%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 A K+ +L +++++ L G+++ A+ G DL A G Q Sbjct: 63 AAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANG--DAQQQVNDAINLL 120 Query: 100 QWGAEAILLGSSTTSF--PDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 G A++L + P ++K A ++PV L D +V S V +G + Sbjct: 121 SQGVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGKVTSFVASDNVALGQTAAK 180 Query: 157 YLVQWA----HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEI 211 ++ NV+ + G + + +GF IA P +++V G D E Sbjct: 181 WIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEIAKYPDIKVVARQEGAFDQEK 240 Query: 212 QRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL-----------KTPLTVVSFYLSHQ 260 N + +L+++P+ID V G + +G + + K + V+ + Q Sbjct: 241 SLNAMTNILQKYPQIDAVFG--ANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGADGTAQ 298 Query: 261 VYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 ++ G+ S + +++ + V N + P L++ N D + + Sbjct: 299 ALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAWPTLLIDKSNIDSDATK 358 Query: 321 RS 322 + Sbjct: 359 KY 360 >UniRef50_A3JZ93 Periplasmic sensory protein associated with the TorRS two-component regulatory system n=1 Tax=Sagittula stellata E-37 RepID=A3JZ93_9RHOB Length = 327 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 108/315 (34%), Positives = 165/315 (52%), Gaps = 6/315 (1%) Query: 27 DAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYS 86 D+Q + + KA++ WKLC ++P LKD YW++ NYG+ AR GV + + EAGGY Sbjct: 13 DSQTTALDYTPLSKAEKKWKLCVVFPHLKDPYWVATNYGVVSHARSLGVAVDLFEAGGYD 72 Query: 87 QLATQQAQIDQCKQWGAEAILLGSS--TTSFPDLQKQVASLPVIELVNAIDAPQVKSRVG 144 L Q+ + C +AILLG+ + + S+PV VNAI + V Sbjct: 73 HLEEQKKLVKDCAAADYDAILLGTVSYDQMTETVTEAAQSVPVFATVNAIQGDGITGMVA 132 Query: 145 VPWFQMGYQPGRYLVQWA--HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDI 202 V W MG G+Y V G V +PGP+ AG GFR + S I + Sbjct: 133 VDWHDMGRAAGQYFVDNYPQGGDAPTVAWLPGPEAAGWVTFTDAGFREVMQNSAAEISAV 192 Query: 203 ALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR--NLKTPLTVVSFYLSHQ 260 GD + QR L++E L+ +P++D +AG A+A EAAMG R L + +V+ Y + Sbjct: 193 YYGDTGADFQRALVEEALDANPDLDYIAGNAVAIEAAMGVLRQRGLTDQVGLVADYFTPA 252 Query: 261 VYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 +YRG++RG + A +D QG L+V+QA+R L+G+ ++ P I +T +N+ + Sbjct: 253 MYRGVRRGIISSAPTDSAALQGTLSVDQAVRHLEGKETPGHIGPVIFSVTKENSSTFPVD 312 Query: 321 RSLSPGGFRPVYFYQ 335 +SL+P F P + Sbjct: 313 QSLAPADFNPTFKVD 327 >UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L479_THERP Length = 357 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 109/291 (37%), Gaps = 15/291 (5%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQ 97 + + + L ++ G ++ A+ GV + + + A Q I+ Sbjct: 69 TVAPGTKITIAMVPK-LVHPFFEDCRKGGEQKAKELGVTFEYVAPQ-QADPALQVKIIED 126 Query: 98 CKQWGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQP 154 + AI + + + + ++ Q +G G Sbjct: 127 LIRKKVHAISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQRVMYIGTDNKAAGKTM 186 Query: 155 GRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRN 214 G + + +G+ V ++ G A + +EGF+ + G +++VD+ D+D++ + Sbjct: 187 GETMAKLLNGRG-KVGIITGGLGALNLNQRIEGFKEGV-GPNIQVVDVQATDDDLQKGLS 244 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK------TPLTVVSFYLSHQVYRGLKRG 268 + + ML HP+++ +A + + + L +V+F + R ++ G Sbjct: 245 VSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIVAFDDLEETKRAIQEG 304 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVS--DNVSPPILVLTPKNADRE 317 + + V G L V+ A L G++ N+ + V+T +N + Sbjct: 305 IIAATMVQRPVQMGVLTVQWAYDILTGKAKPPFKNIDTGVTVVTKENLNSY 355 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 108/314 (34%), Gaps = 19/314 (6%) Query: 17 FSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVD 76 F A + T K+ + SL + ++ + G +E AR+ Sbjct: 25 FGAFTTVGLLAGCGTTSATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATR 84 Query: 77 LKVLEAGGYS--QLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELV 131 G ATQ A ++ + I+L + + P + A + VI + Sbjct: 85 FDFTATGINDERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINID 144 Query: 132 NAIDAPQVKS------RVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMV 185 A+D K+ G G L + G V ++ G A + + Sbjct: 145 VALDEATKKAAGIDLAFFGPDNRAGAKMSGEVLAKAL-GAGGKVAVLEGNPEADNAVQRR 203 Query: 186 EGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRN 245 GF AIA + +V G + +++ L+++P++ + A G + Sbjct: 204 LGFDDAIADGSLNLVVAESGHWETSEGQSITAAWLKKYPDLQGIMC--ANDSMAFGAVQA 261 Query: 246 LK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSD 300 L+ + VV F V +K G+++ + ++ R L+G+ S Sbjct: 262 LEAANLLDKIKVVGFDNIPAVQPLIKDGKMLATVEQYGAQMAAIGMDYGYRTLKGEKFSG 321 Query: 301 NVSPPILVLTPKNA 314 + + ++T N Sbjct: 322 WIRTELKLITKDNL 335 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 57/306 (18%), Positives = 116/306 (37%), Gaps = 24/306 (7%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 + ++ + + + D ++++++ G +EAA+R GV+L G TQ ++ Sbjct: 26 AQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRLGVELIFQG-GPEFSPTTQIPVLNAI 84 Query: 99 KQWGAEAILLGSST---TSFPDLQKQVASLPVIELVNAI-----------DAPQVKSRVG 144 +AIL+ + P + A + +I + I +A + V Sbjct: 85 IARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITVDTFIGENGQYQTGKGNADFPLAYVA 144 Query: 145 VPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIA 203 + G R L + K V + + + +GF+ + P + ++ Sbjct: 145 SDNVEGGRIAARALAKAIGEKG-KVYVSNVKPGISTTDQREQGFKEEMKKYPGITVLATQ 203 Query: 204 LGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLS 258 DND + L L R+P++ V G +A+G +K + V +F Sbjct: 204 YNDNDANKAASQLAAALARNPDLAGVFG--ANLFSAIGAANGVKNAGKRGAVKVAAFDCP 261 Query: 259 HQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 + +K G + MA G +AVE A++ L G+ + + V+ N D Sbjct: 262 ESIINDIKGGTIDMAVCQHPAEMGRIAVEWAVKALNGEKIPNRYGTGYTVIDRANVDSAE 321 Query: 319 IRRSLS 324 + ++ Sbjct: 322 AKAAIY 327 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 102/286 (35%), Gaps = 15/286 (5%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 K+ K ++ + ++ L ++ + G L ++ ++ Q QI+ Sbjct: 37 TKKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGDQLITMDPAM--DVSKQIDQINDMIT 94 Query: 101 WGAEAILLGSSTTSF--PDLQK-QVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGR 156 G EA+ L P L+ + A++P+I + D V + VG G G Sbjct: 95 QGVEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEVKDMNYVTAYVGSDNKNAGKVCGD 154 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLL 216 LV+ + ++ + + GF++AI G IV G D++ L Sbjct: 155 DLVKRY-PNGGKIAILNC-PTMNSINDRIAGFKSAIEGKNFTIVAEQDGKGDLQTSMKLA 212 Query: 217 QEMLERHPEIDVVAGTAIAAEAAMGEGRNLK----TPLTVVSFYLSHQVYRGLKR-GRVI 271 ++L+ H +I + G A+G K + + + S + + G+ + Sbjct: 213 DDILQSHSDIVAIMG--GNDPTALGALAACKSAKQSKILIYGVDGSPDAKKEIASGGQFV 270 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 + G + E + L Q+V ++ N + Sbjct: 271 GTGAQSPKQIGVKSAELGYKVLNKQNVEKKTPVQTFLINKDNVSKY 316 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 54/307 (17%), Positives = 118/307 (38%), Gaps = 31/307 (10%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLE----AGGYSQLATQQAQI 95 A + W++ L+ + D +W + G+Q A+ G+ V + Q + I Sbjct: 73 TATQPWQIAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKKQISTI 132 Query: 96 DQCKQWG-AEAILLGSSTTS--FPDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMG 151 + + +++ + P ++K + VI + ID Q+ + V F+ G Sbjct: 133 LELIDNNDLDGLVIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQILTFVTFDNFEGG 192 Query: 152 YQPGRYLVQWA-----HGKPLNVLLMPGPDNAGGSKEMVEGFRAAI----AGSPVRIVDI 202 G +++Q +N+L++ G + + E +GF + + I+D+ Sbjct: 193 QILGEWVIQKLTQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSLEILDL 252 Query: 203 ALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL----KTPLTVVSFYLS 258 D + + + + Q LE+ P IDV+ A + A+G + K+ + + F + Sbjct: 253 KSADWETKKAKMITQAWLEKFPTIDVIM--AADDQMAVGASEAVQEANKSGIIITGFDGT 310 Query: 259 HQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQS--------VSDNVSPPILVLT 310 +K G++ + Q L + I L+ + + + L++T Sbjct: 311 PYGLNAIKTGQIDATINQLPRTQISLITQLMINSLEKEQTTLPLCQLIGQEQTENSLLIT 370 Query: 311 PKNADRE 317 N + Sbjct: 371 QDNINEA 377 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 115/320 (35%), Gaps = 23/320 (7%) Query: 14 LPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY 73 L + + A A L +K K+ + + L+ ++ A + Sbjct: 20 LAGSLLALAIGFGVATAHADDALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKC 79 Query: 74 GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST--TSFPDL-QKQVASLPVIEL 130 G L + +A + Q + I + ++ P + Q + A +PVI + Sbjct: 80 GWQLVMTDANSSNS--KQVSDIQNMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILV 137 Query: 131 VNAIDAP------QVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEM 184 +D + +G + G++ +LV+ GK ++ + G A + + Sbjct: 138 DRDVDQSVAKAGRDYITFIGSDFIDQGHRAADWLVKATGGK-AKIIELEGTTGASAANDR 196 Query: 185 VEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEG 243 +GF IA +P + I+ GD + R +++ +L+ HP++ V A E A+G Sbjct: 197 KKGFDEIIAKNPGMTIIASQSGDFARDKGRQVMETLLQAHPDVTAVY--AHNDEMALGAI 254 Query: 244 RNL-------KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQ 296 + + +V+ + + G + + G LA + A R +G+ Sbjct: 255 AAIKAAGKQPGKDIQIVTIDGTKGGMDAIAAGELGASVQSSPF-FGPLACDVAQRYAKGE 313 Query: 297 SVSDNVSPPILVLTPKNADR 316 + V N + Sbjct: 314 KIPTWVKVSDKFYDKSNVQQ 333 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 60/332 (18%), Positives = 118/332 (35%), Gaps = 28/332 (8%) Query: 1 MRVL----LFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKD 56 M+ + L+S+ + S D + K+ + D Sbjct: 1 MKKFRNYVIMGLVSMLSIFLISCSQKGDTADGGQGG----------KKIKVGVSIANFDD 50 Query: 57 SYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP 116 ++ + GM++AA + G D+++ +A Q Q++ G + I++ TS Sbjct: 51 TFLTYMMDGMKKAAEKEG-DIELEFVDAKEDIAKQMNQVENFVTQGKDVIIVVPVDTSAA 109 Query: 117 DLQKQVA---SLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLM 172 D A ++ + + P VG + G YL + GK N++++ Sbjct: 110 DPMTNAAVTNGTKIVYVNRNPGNLPDGAYYVGSEEKKAGIMQMEYLAEKMGGKG-NIVIL 168 Query: 173 PGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPE-IDVVA 230 G + G+ + EG P ++I+D G + L ++ I+ + Sbjct: 169 MGKLDNEGTIKRTEGVEEIAKKYPDIKILDKQTGLWQRTDGMAKTENWLNKYGNEINAIV 228 Query: 231 GTAIAAEAAMGEGRNLKTP----LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 + A+G + LK + V+ + L G + QG AV Sbjct: 229 SN--NDDMALGAVQALKDSGKTGIFVIGVDATPDGLAALAAGDISATVFQDADGQGGGAV 286 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 E A + G++V P ++TP+N + Sbjct: 287 EVAKKAANGETVVKETWVPFKLVTPENINEFK 318 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 60/305 (19%), Positives = 112/305 (36%), Gaps = 21/305 (6%) Query: 29 QHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQL 88 A K+ D++ +L G++ AA+ VD+++ + G +++ Sbjct: 7 SVLASAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQIED--GKNEV 64 Query: 89 ATQQAQIDQCKQWGAEAILLGSSTTSFPDLQ---KQVASLPVIELVNAI----DAPQVKS 141 TQ QI G +AI++ T + A +P+I + P ++ Sbjct: 65 GTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVNQLPDNQA 124 Query: 142 RVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG---SPVR 198 V G + + GK NV++M G + + + + I S ++ Sbjct: 125 FVASNEEVSGTLQTEEVCRLLGGKG-NVVVMMGELSNQAAIQRTKDIHDVIKRKECSGMK 183 Query: 199 IVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK------TPLTV 252 +V + +L+ L E D V E A+G + LK + V Sbjct: 184 VVAEQTAEWSRLKGNDLMTNWLSAGLEFDAVISN--NDEMAIGAIQALKASGRKMDSVVV 241 Query: 253 VSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPK 312 + +K G + + QG AV+ A+R +G++V V P ++TP Sbjct: 242 AGIDATPDALAAMKSGDLDVTVFQSAKGQGAGAVDAAVRLAKGENVDQKVWVPFELVTPA 301 Query: 313 NADRE 317 N D+ Sbjct: 302 NLDKY 306 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 46/322 (14%), Positives = 103/322 (31%), Gaps = 22/322 (6%) Query: 5 LFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNY 64 L+ +L + + + + + + + ++ + Sbjct: 11 SVAYLAWLVLSCVALSCGGPSSPTPVSSDSGESTKGSVSKGTVGVSLLTTTNPFFNVIAD 70 Query: 65 GMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQ 121 ++ + G D++V+ G +A Q+ Q+ G AI+L + + Sbjct: 71 NIKSELVKEGYDVEVV--SGEFDVARQKNQVKDFIVAGHAAIVLCPCDSRGIGPAIQEAT 128 Query: 122 VASLPVIELVNA--IDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAG 179 A +PV A +V S + G Q +++ V+++ A Sbjct: 129 AAGIPVFTADIACLAPGAEVVSHIATDNLGGGKQAAEAMIEAVGSAGGKVVILDF-KAAE 187 Query: 180 GSKEMVEGFRAAIAGSP-------VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT 232 V+GF+ I + IV GD + ++ L+ HP++ + Sbjct: 188 SCILRVQGFKEVIDKHNSENPSSAITIVSELPGDGQKDKSYKAAEDALQAHPDLAGIF-- 245 Query: 233 AIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVE 287 AI +A+G L+ + +V F + + G++ G+ Sbjct: 246 AINDPSALGARAALEKANKADQVKIVGFDGQPDGMQAIDEGKIFADPIQHPDQIGKRVAA 305 Query: 288 QAIRQLQGQSVSDNVSPPILVL 309 + +G+ V P + Sbjct: 306 SIVSYFRGEEVPKEQLIPTGLY 327 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 110/308 (35%), Gaps = 17/308 (5%) Query: 37 TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 TP+ K+ +L+ +++ L G + AA+ G +L L+A G + Q I Sbjct: 26 TPVAHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFLDANG--DVNKQNNDIQ 83 Query: 97 QCKQWGAEAILLGSSTTSF--PDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 + +++ P + +PVI + +I+ V + +G +MG Sbjct: 84 DLLTRKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSINGGGVTAHLGRDNVKMGKA 143 Query: 154 PGRYLVQWAHGKP---LNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIE 210 G ++ K V+ + G +GF A+ GS +IV + Sbjct: 144 VGDAVLAELKKKGTTRGKVIEIQGDAGGTVMAARRDGFHDALKGSGFKIVAGPYAEYTRA 203 Query: 211 IQRNLLQEMLERHPEIDVVAGTAIAAEAAMGE----GRNLKTPLTVVSFYLSHQVYRGLK 266 +Q++L+ HP++ VV A + AMG K + V + + Sbjct: 204 NAVTAMQDLLQAHPDVKVVY--AHNDDMAMGALKVLAEAGKKDVFVAGVDGLSEALASMA 261 Query: 267 RGRVI-MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 G A + + G++ V+ A G+ V V +T N Sbjct: 262 GGDQYVATALNDPRYLGDMTVQTARAIKAGKKVPAFVDAGTKAVTKANVGEFKRTGLF-- 319 Query: 326 GGFRPVYF 333 +RP F Sbjct: 320 AEYRPAVF 327 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 59/327 (18%), Positives = 118/327 (36%), Gaps = 40/327 (12%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ + ++ + LF L +A + +++ S DS+ Sbjct: 5 MKYMKWITV-LFCLLGLAACR------------------QDAPRFRIGVAQCS-DDSWRH 44 Query: 61 SLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT---SFP 116 +N + A Y GV +++ A Q + G + +++ ++ + Sbjct: 45 KMNDEILREAMFYDGVSVEIRSAA--DDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPI 102 Query: 117 DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 + +PVI + I + + + +G +++G G Y+ GK NV+ + G Sbjct: 103 VEEAYQKGIPVILVDRKILSDKYTAYIGADNYEIGRAVGNYIASSLKGKG-NVVELTGLG 161 Query: 177 NAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 + + E +GF AAI+ P ++++D A + E + ML RHP+ID V A Sbjct: 162 GSTPAMERHQGFMAAISNYPDIKLIDKADAAWEREPAEVEMDSMLRRHPKIDAVY--AHN 219 Query: 236 AEAAMGEGRNLK-----TPLTVVSFYLSHQ---VYRGLKRGRVIMAASDQMVWQGELAVE 287 A G + K + V + + G+ ++ Sbjct: 220 DRIAPGAYQAAKKAGREKEMIFVGIDALPGKGNGLELVLDNVLDATFIYPTN--GDKVMQ 277 Query: 288 QAIRQLQGQSVSDNVSPPILVLTPKNA 314 A+ L+ +S V+ NA Sbjct: 278 LAMNILEKKSYPRETVMNTAVVDRTNA 304 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 124/329 (37%), Gaps = 20/329 (6%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWH--DAQHFTVQASTPLKAKRAWKLCALYPSLKDSY 58 +RV LLS+ S N+ A T + + + L + + Sbjct: 14 LRVYAATLLSIVSGTLVSCTNISPNGPTAADTDTNTQTNNGSPHKLRSVGVTLGDLSNPF 73 Query: 59 WLSLNYGMQEAARRYGVD-LKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF-- 115 ++ + G ++ A++ G + ++V L Q QI+ + I++ ++ + Sbjct: 74 FVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTDLIIINAADSKGIR 133 Query: 116 -PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 Q + A VI + AI+A + + V Q G +Y+ GK NV+++ G Sbjct: 134 PAVDQARQAGKVVIAVDTAIEAD-IDATVTTNNVQAGEISCQYIADRLKGKG-NVVIVNG 191 Query: 175 PDNAGGSKEMVEGFRAAIAGSP-VRIVD-IALGDNDIEIQRNLLQEMLERHPEIDVVAGT 232 P + V+G +A P ++++ + + ++ ++L P+ID V Sbjct: 192 PP-VTSVIQRVDGCLKVLAKYPDIKLLSKDQNAEGSRDGGLRVMSDLLVTFPKIDAVF-- 248 Query: 233 AIAAEAAMG----EGRNLKTPLTVVSFYLSHQVYRGLKRGR--VIMAASDQMVWQGELAV 286 AI + +G + + +V + + + G A+ + A+ Sbjct: 249 AINDPSGVGVDLAANQAKRQDFFIVGVDGAPEAIEAIASGDSLYAATATQNPRGMTQTAI 308 Query: 287 EQAIRQLQGQSVS-DNVSPPILVLTPKNA 314 + L G+ N+ P ++T +N Sbjct: 309 QVGNDILHGKKPESPNILIPAKLITKENV 337 >UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic component n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK7_ANOFW Length = 332 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 115/284 (40%), Gaps = 12/284 (4%) Query: 45 WKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAE 104 + + + YW + G +EA + Y V+++ + + + Q +++ + Sbjct: 53 PHVILISQEFDNPYWRKIEQGAKEAGKNYDVNIEYIGP-LRTSVDEQVKLLEKAIASRVD 111 Query: 105 AILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW 161 I++ + + ++PVI + + + VG F+ G G+ +V Sbjct: 112 GIIVQNLKDEAFIPLIDKAISRNIPVITIDADAPKSRRIAYVGTNNFEAGQLLGKAVVSR 171 Query: 162 AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEML 220 G+ + +M G D + + ++GF + IA P +++V +A + ++ML Sbjct: 172 VEGE-RELGVMIGTDTSENQRLRLQGFLSVIAEHPRLKVVSVASSNISRIQASIQAEQML 230 Query: 221 ERHPEIDVVAGTAIAAEAAMGEGRNLKT----PLTVVSFYLSHQVYRGLKRGRVIMAASD 276 +HP I V+ GT+ A+G K + + F + +++G ++ Sbjct: 231 RKHPHISVMVGTSALD--AIGIRMATKNLHRQDIQIFGFDDVEETIEAIQQGDIVATVVQ 288 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 + G AV+ + L G+ + I V+ +N +E + Sbjct: 289 KPYDMGYSAVKLMVEHLSGKQIQKEHFTAIEVIDRQNVQQERNK 332 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 63/314 (20%), Positives = 119/314 (37%), Gaps = 15/314 (4%) Query: 16 AFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGV 75 A S+ L R TV A +L + Y L MQE AR+ Sbjct: 4 ASSSRPLSRTRAVLFATVLCLAGSTALADLRLGVSVGQFDN-YIAYLVRAMQERARQVPG 62 Query: 76 DLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP---DLQKQVASLPVIELVN 132 + + S + Q Q++ +AI++ + T+ + A +P++ L + Sbjct: 63 GVTLQVEDSGSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNS 122 Query: 133 AIDA---PQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFR 189 + P VG ++G YL + GK ++ ++ G +++ G + Sbjct: 123 RPEVREFPAGVVFVGTDERRLGQMQMEYLAEKMGGKG-DLAILLGRLAHDDTRKRTAGVK 181 Query: 190 AAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEG----R 244 +A P +R+V+ GD + +L L E D V E +G + Sbjct: 182 DVLARYPQIRVVEEQSGDWQRDKGLDLTNNWLSSGREFDAVVAN--NDEMGIGAAMALRQ 239 Query: 245 NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSP 304 + ++V + + RG++ + V GE AV+ A+R ++ V +V Sbjct: 240 AGRREVSVGGIDGTPDGLAAIARGQLAVTLLRDPVAMGEEAVDVALRLVRKDVVQGDVWI 299 Query: 305 PILVLTPKNADREH 318 P+ ++TP N + Sbjct: 300 PVHLITPDNHTQFQ 313 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 102/308 (33%), Gaps = 19/308 (6%) Query: 31 FTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLAT 90 A + K+ L S + ++L G+++ A+ GV++ VL+A G +T Sbjct: 24 APSAAQEANDGTKTKKIAVLLYSQSFEFMVALGQGVKDKAKELGVEVTVLDAKG--DSST 81 Query: 91 QQAQIDQCKQWGAEAILLGSSTTS--FPDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPW 147 Q +QI G + I+L + ++ P +Q A V + + I + V Sbjct: 82 QISQIQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDSVIPGDIADAAVAFDN 141 Query: 148 FQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDN 207 + G L + K VL G A + +GF I P V Sbjct: 142 EKAGKLGAEALAKLMGEKG-TVLEYQGAKGAYHAILRGKGFNDGIKQFPGIKVIGRDAQW 200 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL-----------KTPLTVVSFY 256 + +L + I+ + + E G L + +V Sbjct: 201 TADNALSLTVDNFTADSSINGLF--SHNDEMVRGIVSGLSQINKDAPVGAANHIPLVGVD 258 Query: 257 LSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 + ++ G G LA++ + L G+ V ++T +N D Sbjct: 259 GTPLALDRIRNGVQDATMDQNPFEMGALALQAQVDLLDGKQVPKMQLTDTKLITKENVDD 318 Query: 317 EHIRRSLS 324 + ++ Sbjct: 319 PTLWGNIF 326 >UniRef50_A0QS72 Ribose ABC transporter, periplasmic binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QS72_MYCS2 Length = 348 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 120/334 (35%), Gaps = 22/334 (6%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFT------------VQASTPLKAKRAWKLCA 49 R++L + LP + + D T + P KA + + + Sbjct: 5 RLMLAAGVVALALPMAACTSSKPQADESSETPAAAGEAPAAAVTTVTAPPKASKNYNIAF 64 Query: 50 LYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLG 109 L + D +++++ G QE A GV + Q+ +D +A+L+ Sbjct: 65 LQGVVGDQFYITMQCGAQEEAANLGVTVNTQGPQ-KFDPTLQKPILDSIVASKPDALLVA 123 Query: 110 SSTTSF---PDLQKQVASLPVIELVNAIDAPQV-KSRVGVPWFQMGYQPGRYLVQWAHGK 165 + P Q A + V+ + + P S + G + + H + Sbjct: 124 PTDVQAMQMPLEQAAAAGIKVVLVDTTTNDPSYAVSAIASDNEGGGRAAFEAI-KQLHPE 182 Query: 166 PLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHP 224 V++M + +GF A+A P V + ND L+ L+R P Sbjct: 183 GGKVMVMGLDPGISTTDARTKGFEEAVAEDPGFTYVGVQYSHNDPATAAQLIGAQLQRDP 242 Query: 225 EIDVVAGTAI--AAEAAMGEGRNLK-TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQ 281 ++ V + A +A G + K + VV F + L+ G V + Sbjct: 243 DLVGVFAANLFTAEGSATGIKQAGKSEQVAVVGFDAGPNQIQALREGTVQALVAQDPGTI 302 Query: 282 GELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 G+ V++A+ L+G S NV ++T +N D Sbjct: 303 GKFGVDEAVTALEGGENSPNVQTGFTIITRENLD 336 >UniRef50_C6J068 ABC-type sugar transport system n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J068_9BACL Length = 330 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 116/320 (36%), Gaps = 7/320 (2%) Query: 2 RVLLFLLLSLFMLP-AFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 + L +++ + +L F P + + + + YW Sbjct: 9 KWLAGIMICIVVLVYLFIGFARYSGKIGSIVKELQGQPASGEPRYHIVLIEQERYHPYWE 68 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDL 118 + G EAA +YG+D++ + + Q +++ +AI++ P + Sbjct: 69 MVEKGAAEAAEKYGIDIEFTGP-VRNNMEEQLNLLEKAIAARVDAIIVQGLNEERFTPVI 127 Query: 119 -QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + +PV+ + Q + VG G + GR +V+ G +++ Sbjct: 128 DKAVRRGIPVVTIDTDAPNSQRLTYVGTDNLAAGERLGRLVVETTGGIGKIGVIIGSDQ- 186 Query: 178 AGGSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 A + ++G + +A + IVD+ + ML HPEI ++ GT+ Sbjct: 187 AANQLQRLDGLKKIVAEHEGLEIVDVRSSNISHMEAIQQAANMLRNHPEITIMVGTSATD 246 Query: 237 EAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQ 296 + + + LT++ F + +++G + + Q GE AV GQ Sbjct: 247 ALGVLQAAKNRDDLTIIGFDNQKETLEAIRKGEIEATVAQQPFLMGETAVRLLYEHFGGQ 306 Query: 297 SVSDNVSPPILVLTPKNADR 316 ++ + VL N + Sbjct: 307 ALKKAYFTEVKVLNAHNVEE 326 >UniRef50_A9KMR5 Putative solute-binding component of ABC transporter n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMR5_CLOPH Length = 334 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 56/344 (16%), Positives = 128/344 (37%), Gaps = 29/344 (8%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ LL ++L+L M+ + +A + + + L + YW Sbjct: 1 MKKLLSMMLALVMVFSLTACGSTNKSKDSS-----------EGEKTIYVIVKVLGNQYWS 49 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 + G ++A + G + ++ S + Q I A+AI++ + P Sbjct: 50 VVQAGAEKAGKDLGCKVVIVGTAAESDIEGQVRYIQDAISAKADAIVVAPLDRTALKNPI 109 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKP------LNVLL 171 ++ + P++ + ++++ + + + G + ++ K + + Sbjct: 110 SEQFKSGTPIVLIDSSVEGEDYSTALMTDNVEAGRMAAKEMIARLKAKGVAEDKEGTIAI 169 Query: 172 MPGPDNAGGSKEMVEGFRAAIAGSP---VRIV--DIALGDNDIEIQRNLLQEMLERHPEI 226 G + + ++GF + +++ DI + D DI Q+ L + + Sbjct: 170 QAGSTGSMAINDRLKGFNEYWGENAPASWKVLNDDIKINDGDISKAVAFCQDFLTTYTNL 229 Query: 227 DVVAG--TAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVI-MAASDQMVWQGE 283 V G G +T LT++ F S+++ + ++ G + + G Sbjct: 230 IGVFGPNNGSTVGFVTGLTEAKRTDLTMIGFDFSNEIEQMIRGGEYDVASMVQRQYMMGY 289 Query: 284 LAVEQAIRQLQGQSVS-DNVSPPILVLTPKNADREHIRRSLSPG 326 V+ A+ G V V +LV+ KN D E ++ ++PG Sbjct: 290 DGVKTALELANGGKVENKIVDTGVLVVDNKNVDSEDVQGIINPG 333 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 51/327 (15%), Positives = 111/327 (33%), Gaps = 40/327 (12%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ L L+ M S + + + S D + Sbjct: 1 MKKHLLFLILCLMGILTSCS-------------------QKHTRYYIGVSQCS-DDEWRH 40 Query: 61 SLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--PD 117 +N+ + A Y GV++++ A Q I+ + +++ + + P Sbjct: 41 KMNHEIVREALFYDGVEVEIRTA--KDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPV 98 Query: 118 LQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 ++K +PV+ + I + + + VG ++G G+Y+V GK +L + G + Sbjct: 99 VEKAYGLGIPVVVIDRKILSDRYTAFVGADNCEIGKDVGQYIVNRLGGKG-KILEITGLE 157 Query: 177 NAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 + + E G A+ P + I G + + +L+ + I++V A Sbjct: 158 GSTPAMERHRGLADALKAEPGIEITASVDGAWLQSVAGEKMDSILQDNKGINLVF--AQN 215 Query: 236 AEAAMGE-----GRNLKTPLTVVSFYLSHQ---VYRGLKRGRVIMAASDQMVWQGELAVE 287 A+G R L+ + V + G + G+ ++ Sbjct: 216 DRMAVGAYLSARQRQLEKEMLFVGIDALPGKGYGVEQVLEGVLDATFIYPTG--GDKVMQ 273 Query: 288 QAIRQLQGQSVSDNVSPPILVLTPKNA 314 A+ L+ + + ++ NA Sbjct: 274 VAMDILEKRPYERDTKLSTALVDKTNA 300 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 56/290 (19%), Positives = 111/290 (38%), Gaps = 14/290 (4%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + K+ D++ L MQ ++ G ++ +A Q QI+ Sbjct: 22 AKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDG-NVSGQFEDAKGDIAQQIQQIENFVSQ 80 Query: 102 GAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDA--PQVKSRVGVPWFQMGYQPGR 156 G +AI+L T + A +P++ + + P + VG G Sbjct: 81 GVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPEVTLPAGMAYVGSDSKLAGKLQME 140 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 L + +GK NV+++ G + +++ G A P ++I+D + ++ Sbjct: 141 ELAKLMNGKG-NVMILMGELSNEATRDRTRGVEEVAAKYPGIKILDKQTAKWGRKEAVDI 199 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEG----RNLKTPLTVVSFYLSHQVYRGLKRGRVI 271 + +ID +A E A+G + K+ + V + +K+G + Sbjct: 200 TTDWALTGQQIDAIASN--NDEMAIGAILALKQAKKSGVLVAGVDGTPDALEYIKKGDLA 257 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 ++ QGE AV+ AI+ ++G+ V NV P ++T N + Sbjct: 258 LSVFQDAKGQGEGAVQTAIQLVKGEKVESNVLIPYQLITKANYQEFADKN 307 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 63/297 (21%), Positives = 123/297 (41%), Gaps = 14/297 (4%) Query: 21 NLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVL 80 NL R+ AS L AK +CA + ++++L G++E A+ ++LKV Sbjct: 3 NLKRFTAIAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLKVS 62 Query: 81 EAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAP 137 A LA Q I+ C +AI++ + P + + A++PVI + + Sbjct: 63 VA--NQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAENS 120 Query: 138 QVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPV 197 ++ S + + G G+ V+ GK V+++ + ++GFR A+A + + Sbjct: 121 KIVSHIATDNYGGGVVAGKLAVKQLGGKG-QVVMLSY-PGISSVEARLQGFRDAVADTDI 178 Query: 198 RIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL---KTPLTVVS 254 +IV + G E ML+ +P+ D++ A + +G G + K+ V+ Sbjct: 179 KIVAVQPGK-TREESMTSTINMLQANPDTDLIF--AFGDDMMIGAGLAVTKQKSKAVVIG 235 Query: 255 FYLSHQVYRGLKRGR-VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLT 310 F + + + +I G+ A++ L G+ V ++ T Sbjct: 236 FDGMPEGIKAVDENDHIIGVVKQDADAMGKTAMKVVADYLNGKEVKSEYPIVPVLYT 292 >UniRef50_C8STD2 Monosaccharide-transporting ATPase n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8STD2_9RHIZ Length = 329 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 122/322 (37%), Gaps = 18/322 (5%) Query: 27 DAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYS 86 A A A+ A K+ A+ L + ++ ++ G++E A+ GV++ V A Sbjct: 10 SAGLLATIAPVSAHAEDAAKVAAIVKGLDNPFFQTMQKGIEEQAKASGVNVSVQAAANMG 69 Query: 87 QLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQ---KQVASLPVIELVNAIDAPQ----- 138 Q ++ + L+ + S P++ + + IDA Q Sbjct: 70 DATGQADRLTAMAMQDFDCYLVNPISVSNLVQALVPVAQKKKPIVNIDSTIDAEQAKAAG 129 Query: 139 --VKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP 196 V + +G G G +++ K V L+ G GS ++GF+ A+ G Sbjct: 130 FAVSTYIGTDNVAAGALAGEEMLKLV-PKGSKVALIAGIVGDVGSNARIKGFKQAVEG-K 187 Query: 197 VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK---TPLTVV 253 + +V + D D E ++L HP++ A A+G R ++ + V+ Sbjct: 188 LEVVVMVSADWDREKALTAATDILAAHPDLAGFF--AANDIMALGVERAVQTSGKDVKVI 245 Query: 254 SFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 + + G + + G + +E +G+ + NV P+L++ N Sbjct: 246 GLDGIVDALKSIAAGELSATVAQYPYVVGAMGLEACAVAAKGKELPANVPAPVLLINKDN 305 Query: 314 ADREHIRRSLSPGGFRPVYFYQ 335 A I+ PGG P F + Sbjct: 306 A-EASIKNFPRPGGDYPDPFRE 326 >UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9L7_LARHH Length = 330 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 120/325 (36%), Gaps = 19/325 (5%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + +L++ + ++++ R + H S + ++ + S + Y+ Sbjct: 4 KKRGWLVIGVLCGLVACSESIPRVDNRSHSAFSQSAG-QNTSPARIVLVMKSPTNPYFSE 62 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW-GAEAILLGSSTTSFPD--- 117 L G A G+DL + A L Q ID+ A+AI++ + + Sbjct: 63 LANGASRAQLETGIDLSIKVAHEDDALEQQIRLIDEVIAKHQADAIVIAPTDSIRLVPVL 122 Query: 118 LQKQVASLPVIELVNAIDAPQVKSR-------VGVPWFQMGYQPGRYLVQWAHGKPLNVL 170 + + A + VI + N ++ V + + YQ L + + V Sbjct: 123 ARARKAGIHVINIGNRLEPRIVALYGMPVVPLISIDNASAAYQVAGKLAEGL-PRGSKVA 181 Query: 171 LMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA 230 ++ G +++ EG A + + +R+V + + ++L +P++ + Sbjct: 182 IIEGLLGTNNTRQRTEGALQAFSEAGLRVVAKQSARWKGDEAYQVTAQLLRDYPDLRAIF 241 Query: 231 GTAIAAEAAMGEGRNLKTP----LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 + A+G R L+ + + F + L + +++ QG LAV Sbjct: 242 CS--NDMMALGAARYLREKGITGVRLAGFDGITEARSALHQRQLVATIDQHASEQGYLAV 299 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTP 311 A+ + G+ +++ +LT Sbjct: 300 RLAVDAIAGRPLAEETLVDTELLTA 324 >UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional regulator n=24 Tax=Bacteria RepID=C5CZB4_VARPS Length = 315 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 102/296 (34%), Gaps = 13/296 (4%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 +A++ + + + +W ++ G ++AA+ V + + + Q + Sbjct: 22 AQAQQEIYIPLVSKGFQHQFWQAVKSGAEQAAKDLKVKVTFEGPETEAMVDKQIDMLAAA 81 Query: 99 KQWGAEAILLGSSTTSFPD---LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPG 155 +AI + + + Q A +PV+ + +D+ + Sbjct: 82 LAKKPQAIGFAALDSQAAIPLLKKAQAAKIPVVAFDSGVDSDIPVTTTTTDNKAAAALAA 141 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQR 213 + + GK V L+ + + +GF I + ++IV + G D Sbjct: 142 DKMAEMI-GKSGEVALVVHDQTSRTGVDRRDGFVNRIKSAYPNIKIVSVQYGGGDQLKST 200 Query: 214 NLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRG 268 + + +L+ P + + G +A+G +K + ++ + Q + G Sbjct: 201 EITKSILQASPNLKGIFG--ANEGSAIGVVNGVKEMKRSGKVVIIGYDSGKQQKNAIMDG 258 Query: 269 RVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 + A + V G VE A++ ++G+ + V N I L Sbjct: 259 SMAGAITQNPVGMGYKTVEMAVKAIKGEKLPKVVDTGFFWYDKTNIADPKIASVLY 314 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 96/281 (34%), Gaps = 19/281 (6%) Query: 48 CALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL 107 + +L + +W+++ G++ A+ GVD+ + + +Q + + I Sbjct: 28 AVILKTLSNPFWVAMKEGIENEAKALGVDVDIFASPSEGDYQSQLQLFEDLINKNYKGIA 87 Query: 108 ---LGSSTTSFPDLQKQVASLPVIELVNAID-------APQVKSRVGVPWFQMGYQPGRY 157 L + P + + ++ L ID V++ + +G + ++ Sbjct: 88 FAPLSPANLVMPAAKAYRKGIYLVNLDEKIDIKNLQKAKGNVEAFITTDNVAVGGKAAQF 147 Query: 158 LVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLL 216 +V + V ++ G + G R S +++V D D ++ Sbjct: 148 IVDKLGSEGGEVAIIEGKAGNASGEARRRGAREVFVKSSSIKLVASQPADWDRIKALDVA 207 Query: 217 QEMLERHPEIDVVAGTAIAAEAAMGEGRN-----LKTPLTVVSFYLSHQVYRGLKRGRVI 271 +L R+P + AMG + + + VV + + + ++ Sbjct: 208 TNVLSRNPNLKAFYV--ANDTMAMGVAQAVINAGKQGKILVVGTDGVPEARKMVSERKLT 265 Query: 272 MAASDQMVWQGELAVEQAIRQLQ-GQSVSDNVSPPILVLTP 311 + G ++ + + G+ + +V P I + Sbjct: 266 ATIAQDPAMIGAKGLKLLVDAARAGKQIPVDVEPKIETVDS 306 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 51/317 (16%), Positives = 113/317 (35%), Gaps = 18/317 (5%) Query: 18 SADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDL 77 + + A + + ++ + Y ++ ++ AA Sbjct: 20 GCGTTSERTSDEPQAQNSKQCKGADGKYVIGMSQANVAEPYRQRMDDDIKAAAAEV-PQF 78 Query: 78 KVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT---SFPDLQKQVASLPVIELVNAI 134 +V A A Q A ++ + +++ + + + +PV+ L + Sbjct: 79 EVKFADAAQDNAKQVADVENYITQQIDLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKV 138 Query: 135 DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG 194 + +G Q+G + G+Y+ + NV+ + G A E +GF I Sbjct: 139 EGDAYTGFIGGDNVQIGTEAGKYVAEKVLPNGGNVVEIKGLAGATPQAERNQGFATGIKA 198 Query: 195 SP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----T 248 +P V++V A GD E + + +L+ +P+IDVV A A G K Sbjct: 199 NPKVKVVATASGDWLREKGQAQMDALLKANPKIDVVY--AHNDPMAEGAYLAAKAVGREK 256 Query: 249 PLTVVSFYLSH---QVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL-QGQSVSDNVSP 304 + + + +++GR+ + G+ A+ A + L ++ + Sbjct: 257 EMKFIGIDALPIPSGGIKAVEQGRLTATFTYPTN--GKEAIAAAKKLLVDCGTIEKTQTL 314 Query: 305 PILVLTPKNADREHIRR 321 P ++ NA + + + Sbjct: 315 PTRLIDKTNAAQIYAQE 331 >UniRef50_C0Z4C9 Putative ABC transporter substrate binding protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z4C9_BREBN Length = 328 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 57/330 (17%), Positives = 120/330 (36%), Gaps = 27/330 (8%) Query: 5 LFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNY 64 L L+++ + + SA T + + + + YW ++ Sbjct: 14 LVFLVAVTLFYSCSAS---------------LTDVVVDKKKTVALIVRMKHGDYWRTVKL 58 Query: 65 GMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQ--- 121 G + AA+ Y +L Q + Q G+E I++ S + Sbjct: 59 GAEMAAKEYERNLNFYAPDYEEDAQRQMELVQQAIADGSETIVVAPSDERVLREAIKLTR 118 Query: 122 VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGS 181 ++P++ L + VKS +G + MG + +V K ++L+ + Sbjct: 119 ERAIPILVLDTVGNDSAVKSYIGTDNYDMGRKAFEKMVYLIEKKG-QIVLLGTDRIKANA 177 Query: 182 KEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 K +G + V +V +D + +E++ +HP++ V A+ + A+ Sbjct: 178 KRREQGVLDLLPREMQVELVANENAPSDKKQIGEWTRELIRKHPQLKGVI--ALDSSTAI 235 Query: 241 GEGR-----NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQG 295 G L+ + +V+ +V L+ G + + + G L V+ A+ G Sbjct: 236 GVAEELESSGLRDKVKIVAIDSPPEVLEYLQEGIISATIIQKPLSMGYLGVKYAVEASNG 295 Query: 296 QSVSDNVSPPILVLTPKNADREHIRRSLSP 325 ++V V V+ +N ++ L P Sbjct: 296 EAVPSLVDTGTKVIDRENMFWSENQKLLFP 325 >UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF94_9GAMM Length = 319 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 58/297 (19%), Positives = 117/297 (39%), Gaps = 17/297 (5%) Query: 30 HFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLA 89 + K+ + SL + +++ + G ++AA GV+L V + + Sbjct: 21 ESGNEPIEQATPVDKPKVLLVMKSLVNPFYIQMEQGARQAANELGVELIVRSGTNETLVE 80 Query: 90 TQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQV------- 139 Q + ID+ G +A+++ + + ++ + ++ + N ID + Sbjct: 81 QQISLIDEQLAAGIDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQRAGLPA 140 Query: 140 KSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRI 199 V V GY+ G+ L + A L++ GP +A ++E +G R A+ + + + Sbjct: 141 IPFVSVDNEFGGYEAGKILAELAGPD-AKALIIEGPRSAINARERRDGARRALQENNIEV 199 Query: 200 VDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEG----RNLKTPLTVVSF 255 V + +E L Q + R+PE++V+ A A+G + + F Sbjct: 200 VASEVASWKLESAYALTQNVHARNPELNVIF--AANDMMALGALLYAQEHGLNDWLIAGF 257 Query: 256 YLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPK 312 ++ GR+ + Q QG V A+ L ++V D V V+T Sbjct: 258 DNIPDARAAVREGRLAVTIDQQADRQGYQGVATAVDLLNDKAVDDVVLVKTRVITAD 314 >UniRef50_Q9K692 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K692_BACHD Length = 332 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 117/318 (36%), Gaps = 9/318 (2%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQ-ASTPLKAKRAWKLCALYPSLKDSYW 59 M+ LF ++ + + A ++ + S+ + + + +SYW Sbjct: 1 MKRHLFFVVGFMICISALATSIYSFVQVTRVETNVPSSTSISLPSSHFVLIAEEENNSYW 60 Query: 60 LSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPD 117 + G +EA ++ V ++ S Q ID + I++ + P Sbjct: 61 RLVEKGAREAENQFDVLVEYKAPK-RSNPEEQLKLIDMAISAKVDGIIVQAVNEEMFTPL 119 Query: 118 L-QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 + + A +PVI + + +G + G G+ ++ G ++V ++ G Sbjct: 120 INKAVDAGIPVITIDTDAPRSNRVAYIGTDNYYSGTIAGKAMLDDMEGD-IHVAVITGSL 178 Query: 177 NAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT-AI 234 + K V+GF I+ P V +V++ + +++E HP I+ GT A+ Sbjct: 179 ESSHQKLRVQGFIDMISNEPRVTLVEVEASNISRLEAELKAHQLMEEHPHINAFYGTSAL 238 Query: 235 AAEAAMGEGRNLK-TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL 293 + L L V++F + L++ ++ + G +VE + Sbjct: 239 DGIGIVAAAEKLGLDDLYVIAFDTLPENLSLLEQEKIDAIVVQEPFEMGLKSVELLLDIR 298 Query: 294 QGQSVSDNVSPPILVLTP 311 +GQ S ++ Sbjct: 299 EGQPYSMTNHTHTSIIRK 316 >UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSM5_DYAFD Length = 904 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 57/288 (19%), Positives = 106/288 (36%), Gaps = 20/288 (6%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEA-ARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 K + A+ + + D + ++ GMQ A L +A S A Q QI++ Sbjct: 20 KQEDAYVIGFSQCTGDDEWRRAMLDGMQRELAFHNNTKLIFRDAHANS--AVQVKQIEEL 77 Query: 99 KQWGAEAILLGS--STTSFPDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPG 155 + G +++ S P ++K +PV+ + +P + VG +Q+G G Sbjct: 78 LRNGIHLLIVSPNESDPLTPVIEKAYKQGVPVVVVDRRTSSPYYTAYVGGDNYQVGKTVG 137 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRN 214 Y G ++ + G + + + G A+A P +R V G +I ++ Sbjct: 138 EYAAALLGGNG-KMIEITGLPRSSPASDRHRGLVDALATRPSIRRVATLNGQWQKDIAKS 196 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQV---YRGLK 266 L+++L R P++D++ A AMG + V+ + + Sbjct: 197 ELRKVLPRFPDLDLIF--AQNEVMAMGAREVCNDIFPDRKIRVIGVDGLPGQFGDIQMVY 254 Query: 267 RGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 G + A GE A A+ LQ Q ++ N Sbjct: 255 DGHITATALYPTG--GEEAARVAMNILQKQPYQKENLLQTAIIDSSNV 300 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 63/303 (20%), Positives = 123/303 (40%), Gaps = 12/303 (3%) Query: 32 TVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 + + + P ++++ GM++AA G +L VL A G S Q Sbjct: 15 SADNAANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNSS--QQ 72 Query: 92 QAQIDQCKQWGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQVKSRVGVPWF 148 Q+ A++ + + + A++PVI + V + +G Sbjct: 73 VNQVQNLVTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQR-PQGDVTTFIGSDSV 131 Query: 149 QMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDN 207 + + YL + GK N+ ++ G + E +G + + +P +++V D Sbjct: 132 KASTELCDYLAKQMGGKG-NLAIIKGVLGSSTEIERSKGCGSILEKNPDIKVVSTTNADW 190 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGTA--IAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGL 265 D N+ Q++L +PE+ + +A AA + ++ L +VS QVY + Sbjct: 191 DENKAYNVAQDVLTANPELQAIFAQNDGMALGAAKAAAQAGRSNLKIVSVDGFPQVYDAI 250 Query: 266 KRGRVIMAASDQMVWQGELAVEQAIRQLQGQ--SVSDNVSPPILVLTPKNADREHIRRSL 323 + G+V+ S + GELAV AI+ + G+ S+ P +++T +N + Sbjct: 251 ESGQVLATMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQPTVLVTKENLEEARSAGYY 310 Query: 324 SPG 326 P Sbjct: 311 GPA 313 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats. Identities = 50/331 (15%), Positives = 107/331 (32%), Gaps = 22/331 (6%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + + + ++ A + ++S + + + + ++ Sbjct: 7 KCFFAAIAATTLVVGMVAGCGNTVKADEVSKEESSGSKEIGPDLTVGFAQSGNPNPWMVA 66 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT---SFPDL 118 L MQ++A YGV+ +A +AT A I+ + +++ Sbjct: 67 LTESMQQSADEYGVNYIYTDA--NDDMATHVANIEDMLAKDLDILVIAPMEDTGLEAVLD 124 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 + +PVI + V G + + + V+ + G + Sbjct: 125 EAAEKGVPVILSARTTQGE-YVTTVYSDQAWEGERCAELIGEKIPD--AKVVELRGIEGT 181 Query: 179 GGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLER-HPE-IDVVAGTAI 234 +GFR +A + IV + + + + +L+ P+ ID V Sbjct: 182 SSVAGREKGFRDVMAEQYPDMEIVVEQTANFSRQEAMDAMANILQAKGPDAIDAVYC--H 239 Query: 235 AAEAAMGEGRNLKT-------PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVE 287 E A+G + +K + VV + + +K G ++ G E Sbjct: 240 NDEMALGAVQAIKDAGLTPGEDIQVVGIDGQKEAWELVKSGEMLGTVQCSPKH-GPTVFE 298 Query: 288 QAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 + L G++V P V+T +N D Sbjct: 299 VIQKILDGETVQKETIVPDQVITKENVDESE 329 >UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGQ4_PETMO Length = 342 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 125/324 (38%), Gaps = 13/324 (4%) Query: 19 ADNLLRWHDAQHFTVQASTPLKA--KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVD 76 + +L+ + F + + P KA + + + ++ +W + G Q+AA +GV+ Sbjct: 16 SFSLIGFGQTSFFDISKANPPKAIQSSDMTIFFIVKASENEFWQIVLDGAQKAANHFGVE 75 Query: 77 LKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS--TTSFPDLQ-KQVASLPVIELVNA 133 EA S+++ Q + ++ +AI+L + P ++ + +PVI + + Sbjct: 76 FIHQEATSESEVSRQVSILETAISTNPDAIVLAPTVADALVPGIERAMDSGIPVIIIDSM 135 Query: 134 IDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK----PLNVLLMPGPDNAGGSKEMVEGFR 189 + S +G + +G + L + K V + G + + GF Sbjct: 136 ANTDNYVSFLGSDNYTIGQRSADELAKALEEKNGSPSGKVAAITYMSGVGSLEARISGFL 195 Query: 190 AAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI--AAEAAMGEGRN 245 I + + +V + + N+ ++L +P++D + + Sbjct: 196 DRIEEAYPDIEVVSVRDAMGQVGNTINITLDLLTAYPDLDGLYANNQMTGDDMVRALDMQ 255 Query: 246 LKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPP 305 + L V+ S Q GL+ G + Q G V A+ G ++ NV Sbjct: 256 GRNDLAAVAVDASAQEIWGLENGYLDSVLVQQPWVMGYAGVAYAVMARNGVPLAKNVDTG 315 Query: 306 ILVLTPKNADREHIRRSLSPGGFR 329 ILV+TP++ +++P + Sbjct: 316 ILVITPESLASGEADAAINPFEYY 339 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 48/324 (14%), Positives = 103/324 (31%), Gaps = 23/324 (7%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 R L LL+ ++ + + + + D++ + Sbjct: 4 RFLGVLLVGAMVMSTVLTGCGNKKESKS----------GGEDKITIGFSSKTNSDTFVKA 53 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDLQ 119 + ++AA+ GVDL + A + Q + +A+++ P + Sbjct: 54 IADAAEDAAKEQGVDLIM--ADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVS 111 Query: 120 -KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 A +P+I I + VG + G G + + ++ GP Sbjct: 112 MANEADIPIIICNGDIADKNYTAFVGCTDQESGEILGTWFNDNV-EHGSQICIIEGPMGQ 170 Query: 179 GGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPE-IDVVAGTAIAAE 237 G GF ++ + + L ++ L + + + + + Sbjct: 171 SGQVGRYAGFEEVGMLDNFEVLSCQTANWKRDEAMALAEDWLTTYGDKLKAIVC--ENDD 228 Query: 238 AAMGEG----RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL 293 AMG +T + + + +K G + ++ QGE AVE A++ + Sbjct: 229 MAMGALSACKAAGRTDVVIGGVDGLEDAIQAVKDGELGVSVLQDSAGQGEGAVEVALQII 288 Query: 294 QGQSVSDNVSPPILVLTPKNADRE 317 G+ + P +T N D Sbjct: 289 NGEDYQKDTRIPFHAITSDNVDAY 312 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 62/329 (18%), Positives = 122/329 (37%), Gaps = 23/329 (6%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + L L L M + +A + + K + + K+ P + ++W + Sbjct: 3 KRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGD-----KKEESVKVAFSIPEMFSTFWEA 57 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDL 118 YG ++ A+ YG + +L+ G L Q +Q+ G +AI + Sbjct: 58 CWYGFEKQAKEYGWEATLLDPQG--DLELQISQLQSQVTKGVDAIGVAPIENEAIGPALT 115 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 A +PV + + V S + + G LV+ G+ ++VL++ G + Sbjct: 116 TVNEAGVPVFCVDRRGEGE-VVSTLETDNVKAGEAMAEQLVKDY-GEDVDVLIIQGVLSD 173 Query: 179 GGSKEMVEGFRAAIAGS-PVRIVDIAL-GDNDIEIQRNLLQEMLERHPEIDVVAGTA--- 233 + + +G + + + IV G+ E + LE +P++DV+ Sbjct: 174 TPTLDRTQGVKNVLEKYENITIVGEPSAGEYSNEAALATTKNFLETNPDLDVIFTCTDAL 233 Query: 234 -IAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVE 287 AA+ E + + S + +V + ++ G V S + G V+ Sbjct: 234 VPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFSQYPIQFGIDTVK 293 Query: 288 QAIRQLQGQSVSDNVSPPILVLTPKNADR 316 L G V + V V+T +N D+ Sbjct: 294 SMKTYLDGGKVEEKVYYNGDVVTDENIDK 322 >UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces RepID=B4UZK6_9ACTO Length = 322 Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 114/311 (36%), Gaps = 24/311 (7%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 K+ + + + YW +L G ++ GV ++V + + A+I G Sbjct: 21 KIAIVTRNFTNPYWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGYNC 80 Query: 106 ILLGSSTTS---FPDLQKQVASLPVIELVNAIDAPQ-------VKSRVGVPWFQMGYQPG 155 + + P + +P++ L IDA S +G G Q G Sbjct: 81 FGVVPVNATNVITPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQAG 140 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNL 215 L++ GK V ++ G +GF +AG + IV D D + + Sbjct: 141 EGLLKLMGGKG-EVAILQGIAGEQNGINRQKGFTEKVAG-KLDIVATQPADYDQAKGQTV 198 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRV 270 + +L+ HP+I + A +G + ++ ++++S +K G + Sbjct: 199 TEAILKAHPKITGIF--AANDTMGLGAAQAVRNAGLTGKVSIISVDGISAALEAVKAGTL 256 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRP 330 S +G+LAV+ I + + V + PI ++ N D+ P F P Sbjct: 257 SGTISQYPYAEGQLAVQACIDLVAKKKVPSRIVAPIALIDSTNVDKAISSV---PQPFVP 313 Query: 331 VYFYQHTSAAK 341 F SA K Sbjct: 314 --FENPLSAGK 322 >UniRef50_D1PLY2 Putative periplasmic sugar-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLY2_9FIRM Length = 324 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 117/303 (38%), Gaps = 14/303 (4%) Query: 34 QASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQA 93 ++ + + +K+ + S +W ++ G + AA Y +DL + TQ Sbjct: 23 SSAAQVPEENRYKVALVAKSTNTDFWKAVFVGAEAAATEYNMDLTIDGPETEEDYETQNR 82 Query: 94 QIDQCKQWGAEAILLGSS--TTSFPDL-QKQVASLPVIELVNAIDAPQVKSRVGVPWFQM 150 I + + GA+A++ + + P + + + ++ + +A++ V + +G + Sbjct: 83 MIAEAVENGAQALVFSAIDFDANAPAIEEAADKGVKIVVIDSAVNTEDVATYIGTDNYSA 142 Query: 151 GYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDI 209 G +Q G L V ++ N+ ++ G A S IV + Sbjct: 143 GQMAAEAALQGTEGT-LKVGIVNYDVNSANGQDRERGAVDTFAESGRAEIVATIHTLAEA 201 Query: 210 EIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRN-----LKTPLTVVSFYLSHQVYRG 264 + ++ML+ HPEI+ + A ++G + L+ L +V+F + Sbjct: 202 SSAQEDTRKMLQDHPEINALL--AFNEPTSVGAAQAVEELHLQNALWMVAFDSNLVTIDA 259 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQ--SVSDNVSPPILVLTPKNADREHIRRS 322 L+ G V G V+ A + L GQ V +V V+ +N ++ Sbjct: 260 LQTGVVDALVIQNTYEMGYFGVQSAYKLLSGQRSEVEKHVDTATRVINRENLFDLDSQKV 319 Query: 323 LSP 325 L P Sbjct: 320 LFP 322 >UniRef50_B8IKX9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKX9_METNO Length = 356 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 115/314 (36%), Positives = 172/314 (54%), Gaps = 7/314 (2%) Query: 27 DAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYS 86 T+ KA+R W++CA YP LKD+YW+S+NYGM A GV L V++AGGY Sbjct: 43 SGTPATISFKPIAKAERQWRICASYPHLKDAYWISVNYGMVAQATAAGVRLTVVDAGGYP 102 Query: 87 QLATQQAQIDQCKQWGAEAILLGSS--TTSFPDLQKQVASLPVIELVNAIDAPQVKSRVG 144 + Q+ QI+ C A+A+++G+ ++ A +PVI VN ++ + ++VG Sbjct: 103 NVKRQREQIETC-SHNADALIVGAVSYDGLSEVVRAIAARIPVIAAVNDMEDAGLAAKVG 161 Query: 145 VPWFQMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDI 202 + W +MG G YL G V PGP AG K + GFRA +AGS I + Sbjct: 162 ISWTEMGRIVGAYLASRHPTGGAAAKVAWFPGPSAAGWVKFIDAGFRAGLAGSAATISIV 221 Query: 203 ALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTP--LTVVSFYLSHQ 260 GD +IQ L++E LE P +D + G+A+ A+AA+ R + + + + Y +H Sbjct: 222 KWGDTGFDIQSRLVEETLESGPPVDYIVGSAVTADAAVSVLRERRPDTSIKIFADYFTHG 281 Query: 261 VYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 YR +KRGR+I A +D V QG LA++QAIR L+ + +V P IL++ N DR + Sbjct: 282 TYRAIKRGRLIAAPTDSPVLQGRLAIDQAIRALEQKLEHRHVGPSILLVYKSNVDRLDLD 341 Query: 321 RSLSPGGFRPVYFY 334 SL+PG F P + Sbjct: 342 DSLAPGWFEPRFEV 355 >UniRef50_A1STY3 Transcriptional regulator, periplasmic binding protein of LacI family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STY3_PSYIN Length = 334 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 54/321 (16%), Positives = 116/321 (36%), Gaps = 22/321 (6%) Query: 6 FLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYG 65 +LL+LFM+ D ++ V + P + + + +L + ++ + G Sbjct: 19 IILLTLFMV-GCGEDAAPKFSVELKSKVIQNEP---QDKHTIALVMKTLTNPFFKEMERG 74 Query: 66 MQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT--SFPDLQ-KQV 122 + A + G++L V A + + Q + + +A+++ + P L+ Q Sbjct: 75 ARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIELKVDALVIAPGDSVELIPILKHAQD 134 Query: 123 ASLPVIELVNAIDAPQ-------VKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 + VI + N +D + V Y+ + L + +P V ++ G Sbjct: 135 KGIIVINIDNLLDQEYSKKVGLLNVPFISVDNELAAYKSTKVLTEKL-TQPTEVAIIEGI 193 Query: 176 DNAGGSKEMVEGFRAAIAGSPV-RIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 A ++ G A + S +V + I+ L ++ ++P I + Sbjct: 194 RGALNAELRKNGAIRAFSESKFATLVATESANWKIDEAFELAAKLYNKNPNIGAIFC--A 251 Query: 235 AAEAAMGEGRNL----KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 A+G L K + VV+F Q ++ G ++ QG + A Sbjct: 252 NDMMALGVIEYLQSTGKDNVQVVAFDAIPQALNAVQSGVLLATVDQDAAEQGYQGILSAN 311 Query: 291 RQLQGQSVSDNVSPPILVLTP 311 L G+ ++ ++T Sbjct: 312 NILSGKKTPLKITIEAKIITK 332 >UniRef50_A9KIC5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Clostridium phytofermentans ISDg RepID=A9KIC5_CLOPH Length = 325 Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats. Identities = 59/335 (17%), Positives = 127/335 (37%), Gaps = 24/335 (7%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKD--SY 58 M+ L+S ML S + L+ + + + + L D + Sbjct: 1 MKHKKIFLISASMLLTLSLAFFIYIRT-----------LEKPKQYYMICIPKVLDDSSDF 49 Query: 59 WLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--- 115 W L G Q AA+ Y + L+ + Q I++ + + ILL ++ Sbjct: 50 WSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYD 109 Query: 116 PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 + + A + +I + + + V Q G + G + + K + ++ Sbjct: 110 AAKEIKDAGIKLIVIDSGMKQDIADITVATDNIQAGIRIG-AVTKNLVRKSGKIGVISFV 168 Query: 176 DNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 N+ + + EG + ++ +I I D++ + + E+L ++P+I V+ G + Sbjct: 169 KNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKAYDGTVELLTKYPDISVMVG--LN 226 Query: 236 AEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 +A G R +K + +V S + + L+ G + G L VE+A+ Sbjct: 227 QYSATGAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKAL 286 Query: 291 RQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 + L+ + V + ++T N ++ + P Sbjct: 287 KLLKKEYVPKQLDSGCALITKDNMFIGMNQKLIFP 321 >UniRef50_Q221W3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderiales RepID=Q221W3_RHOFD Length = 331 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 50/297 (16%), Positives = 113/297 (38%), Gaps = 14/297 (4%) Query: 32 TVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 VQ + K + ++ + + ++ N G + AA + GV + + +Q +TQ Sbjct: 36 AVQMNATAKDVKDLRIAVIPK-VAVPFFDDCNNGAKAAADKLGVQYQWVVPQ-NTQGSTQ 93 Query: 92 QAQIDQCKQWGAEAILLG---SSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWF 148 ++ + I + + + + + V+ + +G Sbjct: 94 VRILEDLISKKVDGIAISVNEPKSVEAAIKKAVASGIKVVTFDSDSANSGRSMYIGTINS 153 Query: 149 QMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDN 207 G G + + G+ V ++ G A E + G + +++ P +++V ++ Sbjct: 154 AAGETMGESMAKAIDGEG-EVAILTGQLGAANLNERITGIKKSLSKYPKIKVVATEGTED 212 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGT------AIAAEAAMGEGRNLKTPLTVVSFYLSHQV 261 D+ + + + HP + + G A++ A E + K + V +F Sbjct: 213 DLAKAVSTTESLFRGHPALKGIFGVSQVGGPAVSKVMATKEFGSKKGAVKVFAFDDLPDT 272 Query: 262 YRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSV-SDNVSPPILVLTPKNADRE 317 +G+K G + + V G+LAVE + Q+ G+ +V + V+T +N Sbjct: 273 VKGVKEGYIQGIMVQRPVTMGKLAVEHLVDQITGKEPAPKDVDTGVNVVTSQNLGSY 329 >UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSL0_9FIRM Length = 389 Score = 216 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 56/318 (17%), Positives = 110/318 (34%), Gaps = 25/318 (7%) Query: 33 VQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQ---EAARRYGVDLKV--LEAGGYSQ 87 K+ + + ++ W + G + E A G L V G S Sbjct: 80 ESNGAITKSSDEYSFAGNVKAFENVVWQEIANGYEGFAEDATAAGCKLSVDTTSPMGESD 139 Query: 88 LATQQAQIDQCKQWGAEAILLGSSTTS--FPDLQKQ-VASLPVIELVNAIDAPQVKSRVG 144 Q + + + G A+LL + + P ++ A +PV + N + + VG Sbjct: 140 EEGQLSILKDQVRKGVNAVLLSPISDANCLPGIEAAHEADIPVYAVNNEFNGADM--FVG 197 Query: 145 VPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG--SPVRIVDI 202 + G ++ + G +V ++ G ++ +GF A S +++V Sbjct: 198 PNSLEQGQLAAEWVNEKLGGSG-DVAIVMGMAKTAVTRNRTQGFEEWFADNDSDIQVVAK 256 Query: 203 ALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-------TPLTVVSF 255 D D +++ L+ +P++ + A+G +K + V+ Sbjct: 257 QNADWDRSQAKDVAATFLKTYPDLKAIFCN--NDVMALGVIEAVKEADLTLNKDIYVIGC 314 Query: 256 YLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 + Y ++ + ++G +A E R L GQ+V V P +L N D Sbjct: 315 DGQSEAYDSIRANEMAATIDTFPYYEGYMAAEVCYRSLIGQTVPRVVFTPSKMLDSTNVD 374 Query: 316 REHIRRSLSPGGFRPVYF 333 G PV+ Sbjct: 375 NTPEENI---GWTDPVFE 389 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 114/329 (34%), Gaps = 22/329 (6%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 V L + F+L ++D+ + ++ + +P D + L Sbjct: 10 VALIIYCLSFLLVGCASDSDEQMG------TESVNKAGDDGKMVIGFAHPDFNDMFLGFL 63 Query: 63 NYGMQE-AARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP---DL 118 G+Q A + V++ ++A + Q AQ++ G +AI+ Sbjct: 64 LAGVQAYEAEQTNVEVVYVDA--ENDSDGQIAQVEDLIAQGVDAIMAIPVDLIATEFIVD 121 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 + Q A +PV+ + + + VG Q G + GK + +M G Sbjct: 122 RAQQAGVPVVLINRD-SVEREDAYVGSDSLQAGTIQMEEVAAVLKGKG-KIAIMNGQMGH 179 Query: 179 GGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 G + + P + +V G E + L++ +E D V E Sbjct: 180 TAQINRTLGNKQVVDQYPGMEVVIEGTGGWSREKGKELMESWIESGQTFDAVVAN--NDE 237 Query: 238 AAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 A+G + L + + +G++ ++ QG+ +EQAI+ Sbjct: 238 MAIGAIMAAEEAGIVDELVFAGIDGTPDALDYMSKGKLTISVFQDAKGQGQTGLEQAIKL 297 Query: 293 LQGQSVSDNVSPPILVLTPKNADREHIRR 321 +G+S + P +T +N D + Sbjct: 298 AKGESAEKMTNIPYETITKRNVDEYKKKW 326 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 116/289 (40%), Gaps = 14/289 (4%) Query: 35 ASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY--GVDLKVLEAGGYSQLATQQ 92 + +K+ + SL+ ++++++ ++ + Y + ++++ + Q Sbjct: 44 GGQTASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQI 103 Query: 93 AQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQ 149 ++QC +AI++ + + A + V+ + + S VG F Sbjct: 104 QLVEQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANTKANGGDIVSYVGAQNFD 163 Query: 150 MGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDND 208 +GY L + G+ V+L+ G S+E EGF+ A+ P + ++ D D Sbjct: 164 VGYSLATALFEKLGGQG-KVILIEGKAGNSTSEERAEGFKEALKEYPGIELLASQPADWD 222 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYR 263 +++ L+ + +ID V + +G +K + ++F + V Sbjct: 223 RASAMTVMENCLQTYDQIDGVLTLTK--DMGLGTIEAIKSAGRDKEIVSMTFDVDDDVIS 280 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPK 312 LK G + + + Q +A+ A+ L G V + PI V+T + Sbjct: 281 ALKAGDLYASGNQNEQSQAYIAIMTAVFALDGYKVDSSQIMPITVVTAE 329 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 56/329 (17%), Positives = 126/329 (38%), Gaps = 24/329 (7%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M L L+ L +L + + S A + ++ + +++ Sbjct: 1 MNSALRFLIPLTLLAI----GSIGCSNGSDSHSPQSDSTADSGRL-FGASFQTMNNPFFV 55 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP---D 117 L G+++ G L +L+A Q+ + I + Sbjct: 56 DLGEGLKKELEANGDRLVILDAQ--FNSLKQKNDLSDLILQNVAGIFVNPVNWEGLKGSL 113 Query: 118 LQKQVASLPVIELVNAI---DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 L+ +P+I + + D + V + G + L + + K V+L Sbjct: 114 LEANRKKVPIIIVDAPVKKADEELIVCTVASDNVRAGELAAQALAK-VNPKARLVVL--H 170 Query: 175 PDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA 233 + V GF+ + P ++I+D+ E R ++++++ R+P++D V A Sbjct: 171 LSVNKACIDRVAGFKTELEKHPEMKILDVQEAQGTTEGARPVMRDLIGRYPDLDAVF--A 228 Query: 234 IAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 I A+G L +T+V+ S + ++ G++ ++ G++A E+ Sbjct: 229 INDPNALGVISALDSANKLDQVTIVTVDGSQAGIKAIQAGKLHSTSAQFPREIGKIAAEK 288 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNADRE 317 + L+G+ V +V + ++T +NA++ Sbjct: 289 MLAHLKGEPVEKDVKVRVELITAENAEQY 317 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 216 bits (552), Expect = 8e-55, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 110/287 (38%), Gaps = 18/287 (6%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + + AL + + +W ++ G+++AA++ V+L + + + Q Q Sbjct: 22 AQQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQAVASETDVEPQLNACLNLLQR 81 Query: 102 GAEAILLGSSTTSF---PDLQKQVASLPVIELVNAID-------APQVKSRVGVPWFQMG 151 +A+++ + + Q ++P+++L +D ++ + + G Sbjct: 82 KPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPAVLQREGVKIAFSISSDNRRAG 141 Query: 152 YQPGRYLVQWAH-GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG--SPVRIVDIALGDND 208 Y+V G VL++ G +GF + +IV GD D Sbjct: 142 ASAAEYVVSKLGQGFSGKVLVIEGLAGNVTGAARRDGFTERLKQIAPNAQIVATLPGDWD 201 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL---KTPLTVVSFYLSHQVYRGL 265 N+ + L+RHP++ + A+G + + VV + + + Sbjct: 202 RLKAANITNDTLQRHPDLAAIYC--ANDTMALGAVEAVFAAGKKVLVVGTDGNSDAVKSI 259 Query: 266 KRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPK 312 + GR+ + + G A+E ++ ++G+ V + P LV+ Sbjct: 260 RAGRLNASVAQLPFLVGSRAIENVLKVIKGEQVDPKIIVPTLVIDKA 306 >UniRef50_B6QZG8 TMAO reductase system periplasmic protein TorT n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QZG8_9RHOB Length = 368 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 120/353 (33%), Positives = 193/353 (54%), Gaps = 13/353 (3%) Query: 2 RVLLFLLLSLFMLPAFSADN--LLRWHDAQHFTVQASTPL-----KAKRAWKLCALYPSL 54 ++L+ L+ +F+ A+ + W FT + +A++AW +CALYP L Sbjct: 12 KILMAALVGVFLTGYAHAETWSAVTWEKLLDFTSPRKSISYEPLKQAEKAWSICALYPHL 71 Query: 55 KDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS 114 KDSYWLS+NYGM + A++ ++L+V EAGGY QL Q+ Q+ C +AILLG+ + Sbjct: 72 KDSYWLSVNYGMVKQAKKLNINLRVYEAGGYYQLEQQRKQLQACADSKPDAILLGTVSFE 131 Query: 115 F--PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW--AHGKPLNVL 170 L++ V PVI LVN I + + + V W +MG + + + + A +NV Sbjct: 132 GHHDLLEEIVKDTPVIALVNNIRSDFIAAATSVDWDEMGRRTAQVITKRHPAGTASVNVS 191 Query: 171 LMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVA 230 PG G S + F++ + S +++ GD IQ +L++E LE D + Sbjct: 192 WFPGAGKPGISSTKLSAFKSELTKSSANLLNTRYGDTGKLIQLSLIEEELEGGTAPDYLI 251 Query: 231 GTAIAAEAAMGE--GRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 GT ++AEAA+G R L + VVS YL+H V+RG+KRG++I + +DQ V QG +A++Q Sbjct: 252 GTGVSAEAAIGALKVRGLSEDIEVVSGYLTHGVFRGIKRGKIIASPTDQPVMQGMMAIDQ 311 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAK 341 +IR L+G+ + +P IL++T + + +LSP F P Y + A+ Sbjct: 312 SIRLLEGKPYLKHYAPEILMVTKDSIAEIDLECALSPASFSPTYTVEAQRNAE 364 >UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Rhizobiales RepID=B5ZNU3_RHILW Length = 329 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 113/327 (34%), Gaps = 13/327 (3%) Query: 11 LFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAA 70 + ++ + + A + + YW + G ++A Sbjct: 1 MTIVKSLLSRRAFTALAGAAVIATAMPVTSFAADVTIPIIVKDTTSFYWQIVLAGARKAG 60 Query: 71 RRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST--TSFPDLQKQVASLPVI 128 + GV++ L A S + Q + ++ A+++ + + + S+P+I Sbjct: 61 KDLGVNVPELGAQAESDINGQISILENAVAGKPAAVVISPTEFKALGKPIDEAAKSVPII 120 Query: 129 ELVNAIDAPQVKSRVGVPWFQMGYQPGR----YLVQWAHGKPLNVLLMPGPDNAGGSKEM 184 + + D+ KS + Q G + + + ++++ G ++ Sbjct: 121 GIDSGADSKAFKSFLTTDNVQGGRIAADGLAAAIKEMTGKEEGEIVILTNLPGVGSLEQR 180 Query: 185 VEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT----AIAAEA 238 EGF I ++++ GD N++ +++ +P++ V + A Sbjct: 181 REGFLDQIKTKHPGLKVIADKYGDGQATTGLNMMTDLITANPKLVGVFASNLILAQGVGQ 240 Query: 239 AMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSV 298 A+ L + V+ F + LK G + G ++ A+ +G+ V Sbjct: 241 AI-AENKLGDKIKVIGFDSDDKTVGFLKDGAIAGLVVQDPYRMGYDGIKTALAVSKGEKV 299 Query: 299 SDNVSPPILVLTPKNADREHIRRSLSP 325 NV ++T N I L+P Sbjct: 300 EANVDTGANLVTKANMADPKIDALLNP 326 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 99/293 (33%), Gaps = 21/293 (7%) Query: 36 STPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI 95 ST A + + +L + +W+ + G+++ A+ GV + + + +Q Sbjct: 18 STSAFAAAEY--AVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLF 75 Query: 96 DQCKQWGAEAILLGS---STTSFPDLQKQVASLPVIELVNAID-------APQVKSRVGV 145 + + I P + + ++ L ID V++ V Sbjct: 76 EDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTT 135 Query: 146 PWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG-SPVRIVDIAL 204 +G + +++ + V ++ G + G A S +++V Sbjct: 136 DNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQP 195 Query: 205 GDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRN-----LKTPLTVVSFYLSH 259 D D ++ +L+R+P I + AMG + + VV Sbjct: 196 ADWDRIKALDVATNVLQRNPNIKAIYC--ANDTMAMGVAQAVANAGKTGKVLVVGTDGIP 253 Query: 260 QVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ-GQSVSDNVSPPILVLTP 311 + + ++ G++ + G ++ + + G+ + + +P ++ Sbjct: 254 EARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPEFKLVDS 306 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 45/291 (15%), Positives = 103/291 (35%), Gaps = 22/291 (7%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQID 96 + +++ + D + ++ + M+ + L +A + Q +QI Sbjct: 43 SATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDA--ENSTTRQISQIQ 100 Query: 97 QCKQWGAEAILLGSSTTSFPDLQKQV----ASLPVIELVNAIDAPQVKSRVGVPWFQMGY 152 G + +++ + P + +PVI L I+ + +G ++G Sbjct: 101 ALIDQGIDLLIVSPNE-VAPFAKVIEDVFKRGIPVILLDRKIETESYNAYIGGDNVEIGR 159 Query: 153 QPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEI 211 G ++ GK ++ + G ++ ++E G + P +++V G + + Sbjct: 160 LAGVFIGNHLKGKG-RIVEIWGLPSSSPAQERHRGLLEELRKYPGIQVVKELNGQWERDT 218 Query: 212 QRNLLQEMLERHPEIDVVAGTAIAAEAAMGE-----GRNLKTPLTVVSFYLSH---QVYR 263 ++ L ++D+V A A+G + ++ L V + Sbjct: 219 VGRVVAAELNTLKDVDLVF--AHNDVMALGAYAVCKQKGIEKKLDFVGIDALPGPNAGMQ 276 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 + G + + GE A+E A R L G+SV + + N Sbjct: 277 AITDGILKASFLYPTG--GEEAIETATRILAGKSVKREQVLNSIQIDGSNV 325 >UniRef50_C5EI71 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EI71_9FIRM Length = 357 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 55/353 (15%), Positives = 114/353 (32%), Gaps = 27/353 (7%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRA---------------- 44 M+ L + L+ ML A +A +A + Sbjct: 1 MKKRLAVTLAAVMLAGSLAGCAGGGETTAAPETKAEAQTEAAKTEAEKTEAGTEEKKEEQ 60 Query: 45 ------WKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 + + S ++ + G ++AA +G + + ATQQ ++ Sbjct: 61 PASEATKVIGVIPKSTLFDFYKMVRQGAEDAAAEHGYTINYQGTNSSTDTATQQNIVEDM 120 Query: 99 KQWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 G +A+++ S + +PVI + ++ + V V Y+ Sbjct: 121 MMSGIDALVISSIDAKAINDTMASLDIPVITFDDEMNPSVCLTTVSVNHEAAAAAGAAYI 180 Query: 159 VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEIQRNLLQ 217 + V ++ ++ GF + +V + + D E N +Q Sbjct: 181 AEKL-PDGGKVAVVSAEAGTDVIQQRDRGFENELKKHDGFELVGVYHTEGDREKAANTMQ 239 Query: 218 EMLERHPEIDVVAGTAIAAEAAMGEGRN--LKTPLTVVSFYLSHQVYRGLKRGRVIMAAS 275 ++L HP++ V A A + + +T + V + S ++ + G + S Sbjct: 240 DLLSEHPDLVAVFCCNEGASAGVSKILKDEGRTDILAVGYDSSEELINNIYDGSLDALIS 299 Query: 276 DQMVWQGELAVEQAIRQLQGQ-SVSDNVSPPILVLTPKNADREHIRRSLSPGG 327 G +V AI + G+ D ++ N + + L P G Sbjct: 300 QNPYGLGYNSVTAAIEAIDGKSDFPDVTESAYWLVDADNIHDPEVIKILDPLG 352 >UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y299_LEPCP Length = 318 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 53/335 (15%), Positives = 115/335 (34%), Gaps = 33/335 (9%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ L L + ++L + + A + + S +W Sbjct: 1 MKKYLTFLFACWVLLSSGSAW------------------PADNKLNIVFIPKSSDQMFWD 42 Query: 61 SLNYGMQEAARRYG-VDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS---FP 116 + G++ A + G +DL +Q + + G +AI++ + S P Sbjct: 43 LMRNGVERAMQEEGQIDLTWRGPAYNDDTDSQIRILQYYTRAGVDAIVITPTDRSRLVGP 102 Query: 117 DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 Q + V+ + +A+D V G R L + G+ V+L+ Sbjct: 103 VEQAVRMGIKVVVVDSALDGSGHLQFVTTDNHASGQLAARQLAELM-GQRGRVVLLRTVA 161 Query: 177 NAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 + + + GF ++ + + IV G R+ +L + + D + A+ Sbjct: 162 GSASTDDRARGFIDYLSANAPAISIVADVYGGGSAGKARHSASALLAKSADFDAIF--AV 219 Query: 235 AAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 A G R L+ + F + + GL++ + G LA++ Sbjct: 220 NESATDGMLRALREAGLAGRKRFIGFDSTPFLLEGLEKKEIDGLIVQDPDRMGYLAIKAV 279 Query: 290 IRQLQGQSV-SDNVSPPILVLTPKNADREHIRRSL 323 + L+ + + + ++T N R I++ + Sbjct: 280 VAALRNRPIKESVIHTGTTLVTRANFRRPEIKKLM 314 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 51/340 (15%), Positives = 111/340 (32%), Gaps = 29/340 (8%) Query: 2 RVLLFLLLSLFM----LPAFSADNLLRWHDAQHFTVQASTPLKAK----------RAWKL 47 +++ LL + M L + A A+ P ++ Sbjct: 10 KIVSILLAATMMAGCILTGCGSAESGSLEAADKVAETANAPAAGNGEEGPGGTSGEPAEV 69 Query: 48 CALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL 107 + + +++ + M++ + + + TQ +Q++ G +AI+ Sbjct: 70 SVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVENQILNGTQAII 129 Query: 108 LGSSTTSF--PDLQK-QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHG 164 + P ++ + A +P+I S VG G R+ + G Sbjct: 130 CLAVDAKQSEPIVRACKEAGVPLIAFNRIF--ENCDSFVGADGAVAGSLLARFTGEKTGG 187 Query: 165 KPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLER 222 K NV ++ G + + +++V GD + L++ L+ Sbjct: 188 KG-NVAIVNGIMGQENQFIRRDAIVETLGEMYPDMQVVIEGAGDWKRDKALQLVETWLQS 246 Query: 223 HPEIDVVAGTAIAAEAAMG-----EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQ 277 +ID + + + AMG E + V ++ G++ Sbjct: 247 GTDIDAILC--LNDDMAMGTQLAVEQAGKSDDIIVCGVNGDPDGINAVRDGKIAATVFQN 304 Query: 278 MVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 Q E A+E A++ + G+ + P ++T N D Sbjct: 305 PDRQAEEALEAALQYIHGEKPESKIMIPFELVTADNVDDY 344 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 107/275 (38%), Gaps = 18/275 (6%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 A ++ L +L + Y++S+ G +E A+ +DL V A ++ Sbjct: 23 AFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIVQVAEKEDSTEQLVGLVENM 82 Query: 99 KQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKS------RVGVPWFQ 149 +AI++ + + + + A +P+I+L +DA ++ VGV F Sbjct: 83 IAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDAKAAEAAGLKFNYVGVDNFN 142 Query: 150 MGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDND 208 GY + L + K NV ++ G ++ G A A P ++IV + + Sbjct: 143 GGYLEAKNLAEAIGKKG-NVAILEGIPGVDNGEQRKGGALKAFAEYPDIKIVASQSANWE 201 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEG-----RNLKTPLTVVSFYLSHQVYR 263 E + +L +P I+ + A A+G L + V + Sbjct: 202 TEQALTVTTNILTANPNINGIF--AANDNMAIGAVTAVENAGLAGKVLVSGYDGIPLAIE 259 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSV 298 +K+G++ Q +A+E A++Q+ Q + Sbjct: 260 YVKQGKMQNTIDQLPKKQVAIAIEHALKQINKQEI 294 >UniRef50_A6BDJ9 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDJ9_9FIRM Length = 339 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 125/322 (38%), Gaps = 22/322 (6%) Query: 5 LFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNY 64 + LL + ++ N W KAK + + + S YW+S+N Sbjct: 28 ISALLLMTVILCCGCSNHSSWQ-------------KAKDRYVVGVVTKSNTSEYWMSVNS 74 Query: 65 GMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP---DLQKQ 121 GM+ AA +Y +D+ L Q+ Q+++ +A+ + + + + Sbjct: 75 GMEAAAAKYDMDVITLAPDSELDREVQEKQVEKLIDQNVDALAVAPIDSYHVPDYLDEIE 134 Query: 122 VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGS 181 + + N + ++ +G+ + GYQ + L + K V ++ G G Sbjct: 135 KKKITAVCFDNGMVGGELP-YIGIDNHKTGYQLAQELAEQLDHKG-QVGIVAGDLKQKGH 192 Query: 182 KEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 +E VEGF + P + + + G ++++ +++++ ++P+I + T+ A AM Sbjct: 193 RERVEGFEEYMKSEPEMTVKFVESGYANLQMSEQKVRDLMGQYPQIRGIMATS--AVTAM 250 Query: 241 GEGRNLKT-PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVS 299 G LK + +V+ + ++ G+++ A+ G + G+ + Sbjct: 251 GLVDELKDTDIKIVAVDEQEDSLKAVENGQILALAAQSGYEIGYETIHYIQNLRNGKHLK 310 Query: 300 DNVSPPILVLTPKNADREHIRR 321 +LT N + Sbjct: 311 KKYYLNAEILTQDNVKEYRKKD 332 >UniRef50_B9L4R0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L4R0_THERP Length = 427 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 166/330 (50%), Gaps = 12/330 (3%) Query: 21 NLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVL 80 Q + T KA + + + +P LKD YWL+++YG+ + A+ GV ++++ Sbjct: 98 PGRPAGSLQGPKYEKWTRPKANKPYMIGVSFPHLKDPYWLAVDYGIVDEAQILGVGIELV 157 Query: 81 EAGGYSQLATQQAQIDQCKQW-GAEAILLGSSTTSF----PDLQKQVASLPVIELVNAID 135 A GY+ L Q Q++ E I+L + + + + PVIE++N I Sbjct: 158 AAQGYNDLTGQINQVENLANRADIEGIILAAISYASQDQLVTDIVKNKKKPVIEVINDIQ 217 Query: 136 APQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS 195 AP + ++ V ++ MGY G+++ + + G+ + V+ +PGP +G + + V+GF+AA+ Sbjct: 218 APDIMAKALVSFYDMGYAAGQFVAEDSGGQEVTVVFLPGPAGSGWAPDTVDGFKAAVEEK 277 Query: 196 ---PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTV 252 V+I+D+ GD ++Q +L+++ L +P++ + G A+AA+AA N V Sbjct: 278 VPGKVKILDVKWGDTGKDVQVSLIEDALNAYPDVTYLVGNAVAADAAPDILANRAKKPKV 337 Query: 253 VSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSV----SDNVSPPILV 308 VS Y+ +Y + G+V A +D QG +AV+ +R L G+ P I V Sbjct: 338 VSTYIIPPLYDKIAEGKVAAAPTDFTALQGRMAVDMMVRILNGEKPGVDFPFRAGPIIKV 397 Query: 309 LTPKNADREHIRRSLSPGGFRPVYFYQHTS 338 +TPKN P FRPV+ + + Sbjct: 398 VTPKNYKEFKYEDMFGPRDFRPVFSVKPKA 427 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 54/327 (16%), Positives = 123/327 (37%), Gaps = 39/327 (11%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ L++L+ + A S +N+ + + + S +D + Sbjct: 3 MKQWLYILIFTLLFSACSDNNV--------------------KKYVIGVSQCS-EDIWRD 41 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS---TTSFPD 117 LN + + ++ ++ + A Q+ QI+Q + G +++ + T S Sbjct: 42 KLNNELVMSTYQHD-NVTLKFASANDNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVI 100 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + A +PVI D+ + + +G ++ GY+ G ++ Q GK N+ + G Sbjct: 101 DKAYDAGIPVILFDRKTDSKKYTAFIGADNYEAGYEIGNFIGQQLDGKG-NIAEICGLQA 159 Query: 178 AGGSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEIQRNLLQEML-ERHPEIDVVAGTAIA 235 + + E GF A+ ++++ GD E + +L + I V A Sbjct: 160 SSPAIERNRGFMDALKDYSGIKVIARKHGDWVKESGVMAMDSVLSQAKEPIQYVF--AQN 217 Query: 236 AEAAMGEGRNLKTP----LTVVSFYLSH---QVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 A+G +++K + +V ++ G + + G+ ++ Sbjct: 218 DRMALGALQSIKKHKVKGIRIVGIDALPVPGGGMENVRDGNLEASYIYPTR--GDSVMQL 275 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNAD 315 A+ L+ + + ++T NA+ Sbjct: 276 ALNILEKKPYKRDNYLKGALVTKANAN 302 >UniRef50_B5YA80 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YA80_DICT6 Length = 338 Score = 214 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 100/285 (35%), Gaps = 19/285 (6%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + + + S+ YW + G+++AA+ GV + Q +Q++ Sbjct: 22 SKEIHVAVIGKSV-HPYWAEVELGVKQAAKDLGVKATFFVPQKE-DIPAQISQMESFIAM 79 Query: 102 GAEAILLGSST--TSFPDLQKQVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 G + I + S P ++K +A +PVI L + +G + G G + Sbjct: 80 GVDGIAIAPSDPTAIAPTIEKAMAKGIPVITLDTDAPQSKRLVYIGTDNYSAGKIAGMVM 139 Query: 159 VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEI---QRNL 215 K V + G A S E + GF IA + +V D E L Sbjct: 140 NDLLGIKGGKVAIGTGSLTAMNSLERIRGFMDGIASNKRIVVVTKPALCDFEDTGRAVTL 199 Query: 216 LQEMLERHPEID---VVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIM 272 ++ L +P++ V A A + + +V F + + + +K G + Sbjct: 200 AEQALLTYPDLRGFFGVYAFNGPAAAKAVKAAGKVGQVLIVCFDTTAEHMQLIKEGVISA 259 Query: 273 AASDQMVWQGELAVEQAIRQLQG------QSVSDN--VSPPILVL 309 + G +VE + Q + + N + + V+ Sbjct: 260 TVGQRPYMMGYKSVEVLTKMAQKGVDATLKELPANRIIDTGVDVV 304 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 59/339 (17%), Positives = 121/339 (35%), Gaps = 30/339 (8%) Query: 1 MRVLLFLLLSLFMLPAFSADNL--------------LRWHDAQHFTVQASTPLKAKRAWK 46 M+ + L+L+ M + A + +A A Sbjct: 1 MKKGISLVLAALMAVSLVACGGGSAAKSTSAAASEQTEKQTEKAGETEAKKEETKGEAKT 60 Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 + + ++ S+ M+E A+ YG L V +A G Q Q+ +AI Sbjct: 61 IGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQDAAG--DANKQLGQVQDFITKKVDAI 118 Query: 107 LLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW-A 162 ++ + ++ + A +PV + A D V V + G Y+V Sbjct: 119 VIAPTNSAGSKSMIELAEKAGIPVFTMDIASDGKPVT-HVATDNKKGGQLAAEYVVNNIL 177 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEML 220 K NV ++ + + GF + + +++VD+ D + +++Q ML Sbjct: 178 TEKKGNVAVITYSE-IESCVDRETGFTDYLKENAPDIKVVDVQNYSGDQQKAADVMQNML 236 Query: 221 ERHPEIDVVAGTAIAAEAAMGEGR---NLKTPLTVVSFYLSHQVYRGLKR-GRVIMAASD 276 ++ IDVV + AA+G ++ + + + +K+ G + + Sbjct: 237 LKNDNIDVVFC--VGDPAAIGALSSITAANAATKIIGYDGNPEGVAEIKKGGNWVADVAQ 294 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 G+ +E + L+G+ V + ++ KNA Sbjct: 295 DPAGIGKTTLEAIKKHLEGEKVDSEILIAPYIIDAKNAK 333 >UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN Length = 919 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 53/327 (16%), Positives = 114/327 (34%), Gaps = 42/327 (12%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 +R+L FLL+ + A S + + +++ S +D + Sbjct: 6 LRILFFLLVLWGVAVACS---------------------RREARFRIGVSQCS-EDEWRR 43 Query: 61 SLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---P 116 +N + A Y V++ + A + Q I + G + +++ + + Sbjct: 44 QMNSEILREAHFYEDVEVDIRTAVDDND--RQAKDIRELIAEGVDLLIVAPNEATPITPV 101 Query: 117 DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 + +PVI + I + + + VG +++G G Y+ HG+ +V+ + G Sbjct: 102 VEEAYNRGIPVIVVDRKILSDKYTAYVGADNYEIGKAVGEYVANVLHGQG-DVVEISGLV 160 Query: 177 NAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 + + + +GF AI+ P +R++ + G + +L R P ID+V A Sbjct: 161 GSTPAVDRHQGFVKAISAYPGIRLLAVEDGAWLQLKAGEKMDTLLSRFPHIDLVY--AQN 218 Query: 236 AEAAMGEG-----RNLKTPLTVVSFYLSHQ---VYRGLKRGRVIMAASDQMVWQGELAVE 287 A G + + + + G + G+ ++ Sbjct: 219 DRMAAGAYAAAAREGREKDMRFIGIDALSGKDYGVEKVLAGELDATFIYPTG--GDRVMQ 276 Query: 288 QAIRQLQGQSVSDNVSPPILVLTPKNA 314 A+ L + V+ NA Sbjct: 277 IAMDILNKRDFPRETILGTSVVDRDNA 303 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 214 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 63/334 (18%), Positives = 119/334 (35%), Gaps = 42/334 (12%) Query: 1 MRVL--LFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSY 58 M+ + + ++LS ML A ++ + + Sbjct: 1 MKRINIILIVLSFSMLLLLGACT--------------------QKNVVIGVSQC-CGGVW 39 Query: 59 WLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS---STTS 114 +N M++A +Y VDL A + Q QID + I++ + + Sbjct: 40 REKVNNEMRQAQYQYKNVDLLFTTA--ENDGQCQARQIDSMIARKVDLIVVAPDNVNDVT 97 Query: 115 FPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 + A +PVI + P + +G + G + R+L GK V+ + G Sbjct: 98 PAIERAYRAHIPVILFDRKVKTPHYTASIGGDNVEAGREVARFLASKLDGKG-TVVEITG 156 Query: 175 PDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 +A E GF + P V + +E + L+++ L++ D V G Sbjct: 157 LKDASPVIERHRGFHEVMKNYPGIKVVTLESNWKLERAQELMKQYLDKGGHADGVFG--H 214 Query: 235 AAEAAMGE-----GRNLKTPLTVVSFYLSH---QVYRGLKRGRVIMAASDQMVWQGELAV 286 + A+G R + + +V + +KRG+ + QGE + Sbjct: 215 SDLGAIGAFLEAERRGIDKQMLIVGIDGLPGEWEGVDRVKRGQFAASYVYPT--QGEKIM 272 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 E A+ LQG+ + + TP+N D ++ Sbjct: 273 ELAMNILQGKPYKKDNVMKSFLATPENCDAIALQ 306 >UniRef50_A4XG54 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Clostridia RepID=A4XG54_CALS8 Length = 345 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 60/343 (17%), Positives = 107/343 (31%), Gaps = 29/343 (8%) Query: 1 MRVLLFLLLSLFMLPAFS---ADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDS 57 M+ + LS+F+ A A L+ + LK + + + Sbjct: 1 MKKNFYKYLSIFLAIALIVSLAYALVPNSKDVTQASSGNPKLKGSPKEEYYMVTFASGIE 60 Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL---GSSTTS 114 YW GM+ AA YGV A + Q + Q IL+ Sbjct: 61 YWKGCFKGMKAAADLYGVKAIYTGAP-QFDVNQQVTVLRQVIAKKPAGILVTCANPDALK 119 Query: 115 FPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 P + +PVI S + + G RYL + GK + + Sbjct: 120 APIDEAIKKGIPVITFDADSPKSLRYSVLETGNYNAGAMAARYLGKLLGGKGE--VGIST 177 Query: 175 PDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT 232 ++ +GF + +++V I +ND + ML+ HP I + T Sbjct: 178 VAAQLNHEQRKQGFIDTLKKEFPGIKVVSIVNDENDSTKAARGVAAMLQAHPNIKGIFCT 237 Query: 233 ----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 + A+ E + + +VSF +K+G + + + G + Sbjct: 238 DAPGGVGVATAIKEANKV-GKIKIVSFDTDKGTLDLIKQGVIDASIAQGTWNMGFWGMTF 296 Query: 289 AIRQLQG-------------QSVSDNVSPPILVLTPKNADREH 318 G + V +V+T +N D + Sbjct: 297 LFYLKHGIVNPVDNWKKFGINPLPPYVDTGTMVVTKQNVDAFY 339 >UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC26_PARD8 Length = 911 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 56/330 (16%), Positives = 132/330 (40%), Gaps = 39/330 (11%) Query: 5 LFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNY 64 L++LL LF++ F+ +P K ++ + + S+ D + S+ Sbjct: 6 LYILLWLFLILCFAC-----------------SPGKKEKKYVIGVSQCSMTDIWRQSMIR 48 Query: 65 GMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP---DLQK 120 M+ A + ++L V++A + TQ +QI + + +++ S+ T ++ Sbjct: 49 DMEVEALNHPEIELVVMDASQDND--TQISQIKGFIKKKVDLLIISSNETEPVTPVAVEA 106 Query: 121 QVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGG 180 A +P I L I++ + + +G +++G G Y+ G+ +L + G + Sbjct: 107 YRAGIPTIILDRKINSDEYTTYIGADNYEIGRSIGMYISSLIKGE-TTILEIWGRRGSSS 165 Query: 181 SKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 + E +GF A++ P + G E + + L+ ++D+V A A+ Sbjct: 166 ATERHQGFVDAMSIDPNVKIRELDGYWYKENAYEEVLK-LDSIEDVDIVF--AHNDMMAL 222 Query: 241 GEGRNLK-------TPLTVVSFY---LSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 G ++ + + + +G++ + G +A++ A Sbjct: 223 GAREAIEERDSSLVGHVEFIGVDGLLGGGLGVEAVAQGKLDASFYYPTG--GGVAIKVAW 280 Query: 291 RQLQGQSVSDNVSPPILVLTPKNADREHIR 320 + L GQ+ + + ++ NA +++ Sbjct: 281 QILSGQAYTKKYALSTAMIDKTNAGTLYLQ 310 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 110/304 (36%), Gaps = 19/304 (6%) Query: 34 QASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQA 93 A + + +++ + + + N + A ++ D++++ G + Q A Sbjct: 24 PAGDAVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKH-PDVELIITDGEDRTEKQVA 82 Query: 94 QIDQCKQWGAEAILLGSSTT---SFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQM 150 ++ + +A+L+ + + Q A +PV L ++ Q VG + Sbjct: 83 DVENLIRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVETDQYTQFVGGDNKLI 142 Query: 151 GYQPGRYLVQWAHGKP---LNVLLMPGPDNAGGSKEMVEGFRAAIAGSP--VRIVDIALG 205 G G Y V+ GK N++ + G + + +GF P ++D G Sbjct: 143 GRAAGEYAVELLGGKGKAQGNIVEIWGGMGTQPAHDRHDGFHEFTDKEPGIKNLLDKQSG 202 Query: 206 DNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSH- 259 D + N++ L + +ID+V G A G K + + Sbjct: 203 DWKQDQAYNIMATALRNNEKIDLVYG--HNDPMAYGAYLAAKDAGREKEIKFIGIDALPN 260 Query: 260 QVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHI 319 + + G + G + QA++ L+G+ V V+ L +T +NA + Sbjct: 261 EGVTWVSNGELTATFLYATP--GAEGLRQAVKFLKGEKVEKTVTLDTLKVTEENAAQIMK 318 Query: 320 RRSL 323 L Sbjct: 319 DNGL 322 >UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Thermotoga RepID=B1LAH5_THESQ Length = 343 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 53/316 (16%), Positives = 109/316 (34%), Gaps = 41/316 (12%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + SL + YW ++ GM++AA + G+ +A + A Q +I Sbjct: 20 SEDMTILLAPKSLNNPYWFAVENGMKDAAEKLGIKAIF-DAPVEADAAKQAEKILSYIVK 78 Query: 102 GAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 G + I + + + +PVI + + +G + GY+ G+ + Sbjct: 79 GVDGIGISPNDPEGIKVVVKRALDKGIPVIMFDSDSPDSGRYAYIGTNNYNAGYEAGKLM 138 Query: 159 VQWA-----HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS----PVRIV---DIALGD 206 Q K + + ++ G A E + GF+ A+ IV D D Sbjct: 139 AQLIEKYRAEKKTIRLAILTGGLAALNLNERIRGFKDALEDYSKRSGKEIVYVADPFPCD 198 Query: 207 NDIEIQRNLLQEMLERHPEIDV--------VAGTAIAAEAAMGEGRNLKTPLTVVSFYLS 258 +D +++++ ++ ++D + +A+G +K L VV F Sbjct: 199 DDSAKAIQIIRDVTRKYTDLDGWFMSGGWPLFAPKETVISALGGPERMK-DLLVVGFDTL 257 Query: 259 HQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ----------------GQSVSDNV 302 +K G V + G L+V + +V + Sbjct: 258 LPELELVKAGAVKGLVGQRPYDMGYLSVLVLYNMAKIGVENTLKMLPKVVKEDGTVDYII 317 Query: 303 SPPILVLTPKNADREH 318 + ++T +N D+ + Sbjct: 318 DTGVDIVTEENVDQFY 333 >UniRef50_C6CWF6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWF6_PAESJ Length = 327 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 115/316 (36%), Gaps = 8/316 (2%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 R + +LL L + L + K ++ + L + +W S Sbjct: 6 RWNIGVLLLLIIFAYVLVQFYLSTERIRDLVTPLEASDKDHTRRQIALISQELDNPFWRS 65 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAIL---LGSSTTSFPDL 118 + G +AA +Y ++L+ + Q +++ + I+ +GS Sbjct: 66 VEEGAMKAAGQYRMELQYMGP-FRINAEEQMKLLEKAIASKMDGIIMQGIGSERDKALIE 124 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKP-LNVLLMPGPDN 177 + +PVI + + + VG G + G + + +P + ++ G Sbjct: 125 KANKLGIPVITVDTDEPGSKRLAYVGTNNSFAGQEMGHLIAEDGQKEPSGVIGVLVGSKE 184 Query: 178 AGGSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI-- 234 A + +EGF++ I + I ++ + ++ML+ HPEI + G + Sbjct: 185 AANQRLRLEGFQSVINTYKGLSIAEVRASNISRLQAAQQAEQMLKEHPEITYMVGFSSLD 244 Query: 235 AAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 A R +T+ +F +++ ++ + Q G A+ + Q Sbjct: 245 GIGMAEAVARVKPGGVTIFAFDDLEDTLAAIRKKQIEASIVQQPTQMGYEAISLLNQYSQ 304 Query: 295 GQSVSDNVSPPILVLT 310 GQ V+ PI V+T Sbjct: 305 GQDVTSKQYTPISVIT 320 >UniRef50_A9KK42 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KK42_CLOPH Length = 320 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 66/334 (19%), Positives = 133/334 (39%), Gaps = 33/334 (9%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 ++++++LL + ++ S N K + + + S K ++W S Sbjct: 6 KIVVWILLGVMLITLVSCSN------------------KDNKKHYVAMITKSTKSAFWQS 47 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQ-- 119 + G AA Y + + Q I Q + GAEA++ + + Sbjct: 48 VFAGASAAATEYNLSISYAGPELEEDYEYQNDLIYQAIEDGAEAVIFSAVDYNANAKAIE 107 Query: 120 -KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 L VI + + +++ QV R+G + G G + + K +++ ++ N+ Sbjct: 108 DAAKKGLKVIIIDSDVNSNQVTCRIGTDNYAAGCMAGEAALASSEEK-IHIGIVNYDINS 166 Query: 179 GGSKEMVEGFRAAIAGSPVRIVDIALGD--NDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 ++ +GFR ++ R++DI + + E R +++LE HPEI+V+A Sbjct: 167 ANGQQREDGFREIVSKDS-RVIDIVTINVVSTTEDARKGTKQLLEEHPEINVIATF--NE 223 Query: 237 EAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 ++G G ++ TVV+F + L+ G V G L VE+ Sbjct: 224 WTSLGVGWAIRDLNLADETTVVAFDSNVVSVGMLETGEVDALIVQNPYAMGYLGVEKVAE 283 Query: 292 QLQGQSVSD-NVSPPILVLTPKNADREHIRRSLS 324 ++GQS+ + ++T N ++ L Sbjct: 284 LIRGQSIEKGTIDTSTTLITRDNMYDAEYQKILF 317 >UniRef50_D2BFJ9 Sugar ABC transporter n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BFJ9_STRRD Length = 345 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 50/337 (14%), Positives = 121/337 (35%), Gaps = 16/337 (4%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 V L++ L A + + A K+ + + S+W ++ Sbjct: 7 VFSLSLVAAIALVALVLGVVGGRATSSASQSAGGGMAGAASGKKIDVIIKASDSSFWQTM 66 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQ 119 G +++ +G+ + + + Q ++ G + +++ +++S + Sbjct: 67 IAGAKQSGGDFGLKVSTFGPTSETNIDQQVQLVENSISRGVDGLVIAPNSSSALNSAIER 126 Query: 120 KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK---PLNVLLMPGPD 176 + A L VI + + + + +G + G Q G+ + + + +V++ Sbjct: 127 ARKAGLKVITVDSRVTTAS-EGFIGTDNLKAGMQAGKRMCELLKAQNKTSGSVMIESSVA 185 Query: 177 NAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 + GF+ +A + V++ +NDI + + + L + E+ V A Sbjct: 186 GIQSLVDRDSGFKQGLANNCPQVKVTLQRYNNNDINTAASQVNDALTANRELAGVF--AD 243 Query: 235 AAEAAMGEGRNLKTP-----LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 + +G R ++ + VV+F Q L G + + G V A Sbjct: 244 NNTSGVGAARAIQDNNVTDTVPVVAFDSDPQENAALAAGTIDALVVQNPYFFGYQGVLAA 303 Query: 290 IRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPG 326 G+ ++ P +V +N + ++ L+P Sbjct: 304 GMAAAGRIPPRDIDPGAVVADKRNMNDPDVKLLLNPP 340 >UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria RepID=A6WVL9_OCHA4 Length = 300 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 58/298 (19%), Positives = 115/298 (38%), Gaps = 13/298 (4%) Query: 23 LRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEA 82 V + A A + A + + ++++L M++ A+ V L+V A Sbjct: 4 KSLSRILFSGVALAMMAGAASAEGIGASLLTQQHPFYIALADAMKKEAQAENVPLEVSIA 63 Query: 83 GGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQV 139 L+ Q A ++ G + I++ + + + A + VI + + V Sbjct: 64 --NQDLSKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVDVPANNVDV 121 Query: 140 KSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VR 198 S VG F G + + + K NV ++ + +EGF+ IA P ++ Sbjct: 122 TSFVGTDNFAGGEKAAELMAKTIGEKG-NVAVIDY-PTVQSVVDRIEGFKKGIAKYPDIK 179 Query: 199 IVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA---AEAAMGEGRNLKTPLTVVSF 255 IV I G + Q +L+ +P+I + G A A+ + L+ + V+ F Sbjct: 180 IVAIQPG-ITRPEALSAAQNILQANPDIVGIFGFGDDAALAAASAVKSAKLENQVKVIGF 238 Query: 256 YLSHQVYRGLK-RGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPK 312 + +K ++ + G++AVE A + ++G+ V V+T Sbjct: 239 DGMEEARNAVKNDPVMVGVIAQYPDQMGKVAVETAAKVIKGEEVPAKQPIVPGVVTKD 296 >UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YAA5_DICT6 Length = 331 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 49/339 (14%), Positives = 112/339 (33%), Gaps = 35/339 (10%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ L + + + + T + + + +L + + Sbjct: 1 MKKFLMIFFIVVIFLLMA------------------TTAQTPKKLVFAWIPKALNNPVFE 42 Query: 61 SLNYGMQEAARRYG----VDLKV-LEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF 115 G + A ++V A S Q ++ + I + + + Sbjct: 43 LGRDGAFKRAEELSKKGPYKVEVLYVASVASDATEQARVVEDVVARKVDGIAISCNDPTA 102 Query: 116 ---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLM 172 + A +PV+ + + +GV ++ G + LV+ +V L+ Sbjct: 103 LIDVINKAVEAGIPVMTFDADSPKSKRFTYLGVNNYEGGKWAAKLLVRAMGTSG-DVALL 161 Query: 173 PGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAG 231 G A +E + GF+ I P ++IV +DI +++E ++++P++ Sbjct: 162 TGVPGALNLEERMRGFKDEIKKYPKIKIVTTVACYDDINRGVQVVEETMQKYPKLRGWFF 221 Query: 232 TAIAAEAA------MGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELA 285 + A + E + V+F + LK G + + G A Sbjct: 222 VGLWPLLAERGSMPLWEKAAKAKKVFTVAFDTLPVELQLLKEGYLCGLVGQKYWGWGYDA 281 Query: 286 VEQAI-RQLQGQSVSDNVSPPILVLTPKNADREHIRRSL 323 ++ + + + D + + ++T KN D L Sbjct: 282 IDILYRKVVNNEKFPDWIDSGMDIVTQKNVDAMIRAWLL 320 >UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB1_PARD8 Length = 887 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 52/323 (16%), Positives = 109/323 (33%), Gaps = 40/323 (12%) Query: 1 MRV-LLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYW 59 M+ L + L+L +L ++ ++ + L D++ Sbjct: 1 MKHPFLLVWLTLIVLCGCTSSG-------------------KQKKHVIGLSQCMLDDAWR 41 Query: 60 LSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS---FP 116 ++ M+ A Y D++++ + TQ QI + + +++ + Sbjct: 42 QAMINDMRIEASNYD-DVEIIIKDAQNNNETQIQQIRDLIRQKVDVLIISPYQSEPITAV 100 Query: 117 DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 + A +P I ++ Q S VG +++G G Y + +L + G Sbjct: 101 AEEAYRAGIPTIITDRKVNTDQYTSFVGANNYEIGLAAGNYAANYLPPN-AIILEIWGLT 159 Query: 177 NAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPE-IDVVAGTAIA 235 ++E +GF A+ G ++ R L+++ HPE ID V A Sbjct: 160 QTSPAQERHKGFVDALREREDLSFRKIEGQWLVDTARMELRKL--EHPEQIDFVY--AHN 215 Query: 236 AEAAMGEGRN-------LKTPLTVVSFYLSHQV-YRGLKRGRVIMAASDQMVWQGELAVE 287 A+ L ++ ++ GR+ + GE + Sbjct: 216 DMMAIAAREYFMAWDSIRGRELRIIGVDAVAGAGLEAVEDGRINASFLYPTG--GEQVIR 273 Query: 288 QAIRQLQGQSVSDNVSPPILVLT 310 A+R +QG+ V + + Sbjct: 274 TAMRIIQGEPVDKFIPLRTAPVD 296 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 45/306 (14%), Positives = 105/306 (34%), Gaps = 17/306 (5%) Query: 25 WHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGG 84 A V A+ + A+ + P+L +++ + ++ A+ GV+L E+ G Sbjct: 29 TSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVNLT--ESDG 86 Query: 85 YSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDA-PQVK 140 + Q A I+ AI++ + + A +PV+ + +D + Sbjct: 87 QNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRVDGVQGIL 146 Query: 141 SRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIA--GSPVR 198 + VG + G +V + + G AG + + +G + + Sbjct: 147 AHVGADNVKGGEAEASAMVAAF-PNGAKLFHLQGQPGAGPAIDRNKGVHNVLDPLKDKYQ 205 Query: 199 IVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK----TPLTVVS 254 I+ + ++ + L + + D + + A+G T + + Sbjct: 206 IIFEQTANFARAEALSVTEAGLAANGKPDAIIC--ANDDMALGALEACAARNFTDVKIYG 263 Query: 255 FYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDN--VSPPILVLTPK 312 F + ++ G++ Q AV+ A+ + ++ V +V+ Sbjct: 264 FDALPEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAKNKTEPKEKLVLLTPIVIGKD 323 Query: 313 NADREH 318 N D+ Sbjct: 324 NLDKAE 329 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 107/318 (33%), Gaps = 14/318 (4%) Query: 22 LLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY---GVDLK 78 + + + + + S+ +S+ + A + GV + Sbjct: 26 SGKEETTKAQVSSEAAKPSNDGGYVVALCNYSIGNSWRAQMEQEFVAEAEKLKAEGVVSE 85 Query: 79 VLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAID 135 + Q + + + I++ +++ + + A + V+ N +D Sbjct: 86 YYITNSNDDINKQISDMQDLITKKVDGIVITAASPTALAPAVEEATEAGIKVVSFDNVVD 145 Query: 136 APQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS 195 + + VG+ + G +LV+ GK ++++ G G Sbjct: 146 TDEQVATVGIDQTEFGRVCADWLVKKLDGKG-KIVVLNGIAGTANDTMRWNGAEEVFKQY 204 Query: 196 P-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE-AAMGEGRNLKTPLTVV 253 P + I+ A D + ++ ML +PEID V A A+ L + Sbjct: 205 PDIEILGSANASWDYAQGKAAMESMLSAYPEIDGVWSQGGAMTQGAIDAFIAAGRKLVPM 264 Query: 254 SFYLSHQVYRGL---KRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLT 310 + ++ R + + A + G A+ I+ L G+ V V+ I V+T Sbjct: 265 TSEGNNGALRAWIENRDNGLSCIAPSDPTYSGAEALRTVIKSLDGEEVPKRVTLDIPVVT 324 Query: 311 PKNADREHIRRSLSPGGF 328 N D+ + + P F Sbjct: 325 EDNVDKYYRQDM--PDSF 340 >UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR03_9FIRM Length = 332 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 118/327 (36%), Gaps = 19/327 (5%) Query: 2 RVLLFLLLS---LFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSY 58 ++++++L++ LF+L + +A + + + + Sbjct: 4 KIMIYILMAVGTLFLLTGCKKNVGTPEDNAVTDESDDKKEDTDQEKKVFGFCGIDMSNPF 63 Query: 59 WLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--P 116 + +L +Q A G L + + G Q QI + + +A+ L P Sbjct: 64 YATLKDSVQSALEEQGDKLLIKDPAG--DAERQNTQIQELIEEDVDAVFLCPVDWKKIEP 121 Query: 117 DLQK-QVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 L + A +PVI L + ++ +V + VG GY G LV+ V+++ Sbjct: 122 ALDALEEADIPVINLDTKVYESGKVAAFVGSDNRNAGYVCGEDLVER-KPDGGQVVIVE- 179 Query: 175 PDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 N E + GF A++ +V ND+ + + ++L ++P++D + Sbjct: 180 NLNVNSVCERITGFEEAVSKGAFEVVKRIQTGNDVSGLKQQVAQVLAQNPDLDAIMC--G 237 Query: 235 AAEAAMGEG----RNLKTPLTVVSFYLSHQVYRGLKR--GRVIMAASDQMVWQGELAVEQ 288 + A + + V S S + L G ++ + + G+ AV+ Sbjct: 238 DDQMAEQVREAITEAGQEKVYVYSVDGSPASKKALVEHTGGMMGIGAQSPINLGKKAVKI 297 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNAD 315 A L G+ + N + Sbjct: 298 ANAVLNGEDYEKETYEETFFINRDNVE 324 >UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1 Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ Length = 511 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 96/284 (33%), Gaps = 12/284 (4%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 + + + + S W + ++++ A Y Q QID Sbjct: 19 SQGGKRYTIGVSQCSEDI--WREKQNAELRMGAYFHDNVELKFAAAYDSDERQVQQIDSL 76 Query: 99 KQWGAEAILLGS--STTSFPDL-QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPG 155 G + +++ T P + + +PVI + + + + ++MG+ G Sbjct: 77 MNEGIDLLIVAPNQVNTISPAIDRAYDKGIPVIVFERKTGSQKYTAFISADNYEMGHVMG 136 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRN 214 Y+V HGK NVL + G + + E GF AI P +++V GD Sbjct: 137 EYIVSRLHGKG-NVLEIKGLAGSSPAIERHNGFMDAIKDEPGIKVVGSLQGDWTEATACQ 195 Query: 215 LLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSH---QVYRGLKRGRVI 271 +E L + + V AMG L + ++ + Sbjct: 196 KSKEWLAANEGVPVDLVFGANDRTAMGAREALGEKPLYCGIDGLPGKNGGIQLVRDSLLD 255 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 + G+ ++ AIR L+GQ ++T NA Sbjct: 256 ASFIYPTH--GDQLMDLAIRILEGQPYEKETMLMSALVTHDNAK 297 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 116/284 (40%), Gaps = 16/284 (5%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 + A Y ++ + ++ +N +++A G L L+ + Q QI +A Sbjct: 42 RFGATYMTMNNPFFEVINNEIKKAVEANGDVLITLDP--ILDVDKQNEQILDLIDQRVDA 99 Query: 106 ILLGSSTTSFPDL---QKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQW 161 I + ++ + A +PVI + I D V + + G + ++ Sbjct: 100 IFVNPIDAKKIEIGLKAAKKAKIPVIVVDAPIYDESLVNCSIASNNYDAGVLCAKDMMSK 159 Query: 162 AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIA-GSPVRIVDIALGDNDIEIQRNLLQEML 220 ++L+ A + E ++GF IA + ++++ A D IEI +++ML Sbjct: 160 RDH--AKIILLEH-ATAKSAVERIQGFLDTIASNANYQVINRADCDGQIEIAMPTMKQML 216 Query: 221 ERHPEIDVVAGTAIAAEAAMGEGRNLK----TPLTVVSFYLSHQVYRGLKRGRVIMAASD 276 + P++DVV A+ +A+G ++ + V S V + G + A+ Sbjct: 217 KETPDVDVVM--ALNDRSALGALAAIESMEIDNVLVYGVDGSPDVKELINTGLIQATAAQ 274 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 V G+LA ++A L+ + + + P+ +++ N + Sbjct: 275 SPVKMGQLAYQKAKALLENKKIEKKIEVPVELISRDNISNFELT 318 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 103/298 (34%), Gaps = 17/298 (5%) Query: 36 STPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI 95 ++ + + + A S D + L +++ D+++ A S Q + Sbjct: 16 TSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDF-DEKHDDVQIKLADSNSDPNIQVNLV 74 Query: 96 DQCKQWGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQ---VKSRVGVPWFQ 149 +A+L+ + + + + A +P+I + + V S VG + Sbjct: 75 QNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDEHMQYVTSFVGSDEIE 134 Query: 150 MGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDND 208 G G ++V GK L++ GP + +G A +++V G + Sbjct: 135 GGRIQGNFIVNTLAGKNAESLILLGPLGQDAVTKRTQGNEEIFAQHKNIKVVSKQEGRWE 194 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT------PLTVVSFYLSHQVY 262 + + + +L + I+V+ E A+G + +T+V + Sbjct: 195 RDRGLAIAENVLAGNKGINVIVSN--NDEMAIGAILATRKLGIKDEDITIVGLDATPDAL 252 Query: 263 RGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 L +G + QG E A +G+ V P ++TP + R Sbjct: 253 EYLGKG-LDATVFQSAQGQGYTGAEMAYLAAKGEKVPSVKWVPFELVTPDKKEEYQAR 309 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 95/299 (31%), Gaps = 13/299 (4%) Query: 30 HFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLA 89 ++ A + + + D + + A + ++V + + ++ Sbjct: 14 SLATISTGSAFAADKFVVGYANMADTDVF-VMARKNAFIEASKSDPAVEVNFSDANNDVS 72 Query: 90 TQQAQIDQCKQWGAEAILLGSSTTSFPD---LQKQVASLPVIELVNAIDAPQVKSRVGVP 146 Q QID AI++ + A +PVI L + VG Sbjct: 73 KQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGIQSAGGKYT-FVGSK 131 Query: 147 WFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGD 206 G G Y+ + K +L + G ++E +GF A+ S V + + Sbjct: 132 NIDAGRLQGEYMKEHL-PKGAKILYLEGTPGLSHTQERKKGFEDALGRSDVTTLASLSAN 190 Query: 207 NDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQV 261 D + ++ ++ P+ D + A + A+G L+ + + + Sbjct: 191 YDRAEGMKVTEDWIQSFPKFDAIV--AANDQMALGALEALQGADRLKGVMISGVDGTADA 248 Query: 262 YRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 +K G + Q + A E +G+ P +T N + + Sbjct: 249 LNAIKAGTMSQTIFQDAAGQAKAAFEVVEGLKKGEDAPAEKLVPFASITKDNVGQYAKK 307 >UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HPK6_GLUDA Length = 336 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 65/337 (19%), Positives = 116/337 (34%), Gaps = 36/337 (10%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 MR LL + ML A A D + + + +YW Sbjct: 23 MRR---LLCAATMLCAAVAVGQAHAADRG-----------------IAVIVKTANSNYWQ 62 Query: 61 SLNYGMQEA-ARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD-- 117 ++ G +A A+ + S +A Q + AI+L S Sbjct: 63 NVRKGAADAVAKVENYTMTFQGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPS 122 Query: 118 -LQKQVASLPVIELVNAIDAPQ---VKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMP 173 + A +PV+ + + I +S + G G+ +V G+ V +M Sbjct: 123 IRKAWEAHIPVVLIDSMISDSGAKYYQSFLATDNEAAGEALGKEMVDHV-GQTGKVAIMS 181 Query: 174 GPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGT 232 G V GFR IA ++IV + + + N ++L +P++ + Sbjct: 182 YVPGVGSEIGRVGGFRKYIAEHSHIQIVGPFYSQSQMALAMNQTTDVLASNPDLKGIF-- 239 Query: 233 AIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVE 287 A A+G GR ++ L ++F + ++ G + A G VE Sbjct: 240 AANEMTAVGVGRAIQQAGKSGKLYAIAFDGNEDEQGFVRSGTFQLLAVQGSYAMGAKGVE 299 Query: 288 QAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 AI L G + V+ ++ +T N D ++ L Sbjct: 300 TAIGVLTGAKPTKYVNTGVVFVTSANLDSPEAKQVLY 336 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 52/330 (15%), Positives = 123/330 (37%), Gaps = 25/330 (7%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + + + + + L + + K + ALY ++ + Y+ Sbjct: 11 KKAILCIGYIIVATICIVSIALLFFSRNKNESE-------KSKRTIGALYMTMNNPYFEV 63 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS---FPDL 118 +N ++ G L+ ++G Q Q+++ + + IL+ + Sbjct: 64 INEEIKAVVESKGDVLETRDSGM--DAKVQAKQVEKFIEEKVDCILINAVDWKKIGSSLE 121 Query: 119 QKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + + A +PVI + I + V V +Q G Q + L++ K +L + Sbjct: 122 KAKKAGIPVIAVDALIYNRSFVDGTVVSNNYQAGEQCAKDLMKR--RKKGKILFLV-QSE 178 Query: 178 AGGSKEMVEGFRAAIAGSPVRI--VDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 + + ++GF+ + + + V +E+ + L++++L + +IDVV A+ Sbjct: 179 NKSAIDRIKGFKETLEKAGWKYENVGELECQGQLELSQPLVEKVLNKTKDIDVVM--ALN 236 Query: 236 AEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 +AMG L + + V S + + ++ ++ G+ VE Sbjct: 237 DPSAMGAMAALDAEHMLSDVLVYGADGSPEAKTMIYENKMAATSAQSPRTTGKKTVEMLY 296 Query: 291 RQLQGQSVSDNVSPPILVLTPKNADREHIR 320 + L G+ P+ ++T N + + Sbjct: 297 KILDGKKTEKQCIVPVSLITKDNINDYSLS 326 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 77/324 (23%), Positives = 131/324 (40%), Gaps = 32/324 (9%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 + L+ L + L S P RA L + K+ ++L Sbjct: 4 KSLVLLTAGILTLSGCS-------------GTPRDVPAAGSRAVTLALS--TEKNPFFLQ 48 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDL 118 + YG Q A G+DL VL+AG Q AQ+D G ++ + + Sbjct: 49 VRYGAQAKANELGIDLTVLDAG--DDAEVQAAQLDD-VSSGVA--VVNPADSEALAPAVS 103 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 Q +P I + I V + + + G L + + V+++ G + + Sbjct: 104 QLNEKGIPAITVDRTITGADVAALIDSNNTEGGAAAASVLAKAIRAQG-EVIVLRGIEGS 162 Query: 179 GGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 S E EGF A+A P VRIV D D + R+L+ ++L HP++ + A E Sbjct: 163 SSSAERYEGFTQAMAEHPRVRIVAAEAADFDRDTARDLVTDLLADHPDVAGIF--AENDE 220 Query: 238 AAMGEGRNLK----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL 293 A+G L + VV F + + R +K +++ + Q G A+EQA + L Sbjct: 221 MALGAVDALGERAGKDVKVVGFDGTEEGVRAVKNRKLVATIAQQSSELGATAIEQAGKLL 280 Query: 294 QGQSVSDNVSPPILVLTPKNADRE 317 G++ V P++V+T N ++ Sbjct: 281 DGEAAES-VHTPVMVVTRDNIEKY 303 >UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQH1_9FIRM Length = 356 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 43/357 (12%), Positives = 113/357 (31%), Gaps = 43/357 (12%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAK------------------- 42 + +L + LS+ M SA + + Sbjct: 3 KRMLAVALSVVMAVGLSACTSGGNATTAAPEAKTEAAKTEEAKTEEAKTEAEAKEAAAGV 62 Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 K + + +W+ + G++ GV + + A L Q ++ C Q G Sbjct: 63 SDKKYAVILKTQATDFWVKMWKGVEAETAVKGVKVDLYSAQSEDDLEGQLTILESCIQQG 122 Query: 103 AEAILLGSSTTSFPDL---QKQVASLPVIELVNAID-------APQVKSRVGVPWFQMGY 152 + I + + + + ++++ D + V +G Sbjct: 123 YDGIAIAPLSGVNVLPGIGEATAKGITIVDVDEKFDETELANQGGACVAFVATDNVAVGA 182 Query: 153 QPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQ 212 + +Y+V A G+ V ++ G S++ +G + A + I+ D D + Sbjct: 183 KGAQYIVDTA-GEGAKVAIIEGKSGNQSSEDRTQGAKQAFTDGKMDIISSQAADWDRQKA 241 Query: 213 RNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRN-----LKTPLTVVSFYLSHQVYRGLKR 267 ++ +++++P++ + A+G + + +V + + Sbjct: 242 MDIASTLIQQNPDLKGIYCC--NDGMALGAVQAVINANKLGEIMIVGTDGDAEAVSSIAN 299 Query: 268 GRVIMAASDQMVWQGELAVEQAIRQLQ-GQS-----VSDNVSPPILVLTPKNADREH 318 + + G +++ I ++ G+ + +++T +NA Sbjct: 300 NELSATVAQDPAQIGATSLDLLIEAVESGKKGEVGTFPEKTPVESVLVTAENAADFQ 356 >UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 RepID=A0LXA2_GRAFK Length = 907 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 121/327 (37%), Gaps = 35/327 (10%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ L LL + S + +K+ D++ Sbjct: 1 MKYLKLLLFVFLSILTDSCQVKSE-----------------EEKFKVGFSQAMTTDNWRR 43 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDL 118 +N M+ A D+ + + + Q A I++ + G + +++ + P + Sbjct: 44 EMNKSMKLEAS-MHPDIILEIKDAENHITNQVAHIEEFIKDGVDVLIVSPIQSIPITPAI 102 Query: 119 QKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 +K A +P I + I+ + VG ++G +Y++ + GK +++ + G + Sbjct: 103 EKAMAAGIPTIIIDRKIEGQNFTAYVGANNIEIGRNAAKYILSHSSGK-ADIIEITGQEG 161 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 + + E GF+ + P +++ + GD + ++ L ++L+ D + A Sbjct: 162 SSPAYERSMGFKKTLDSVPELKVRHVIKGDWEKTSIQSKLSDLLDSVKAPDYIF--AHND 219 Query: 237 EAAMGE-----GRNLKTPLTVVSFYLS---HQVYRGLKRGRVIMAASDQMVWQGELAVEQ 288 A+G ++L+ + ++ + + +K + ++ Sbjct: 220 RMALGAWEVARSKSLEEEINIIGVDGVFGPNGGIQLVKDNILNATILYPTGGM--ETIKL 277 Query: 289 AIRQLQGQSVSDNVSPPILVLTPKNAD 315 A L G++V+ N +++ N D Sbjct: 278 AEDILNGENVNKNNILRTVIIDSVNVD 304 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 209 bits (534), Expect = 9e-53, Method: Composition-based stats. Identities = 58/300 (19%), Positives = 115/300 (38%), Gaps = 22/300 (7%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQ 97 A A + A D + L GM++ A+ GVDL++ +A + +A QQ+QI Sbjct: 15 STAAHAETIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQIEDA--LNDVAKQQSQIQN 72 Query: 98 CKQWGAEAILLGSSTTSFPDL---QKQVASLPVIELVNA---IDA-PQVKSRVGVPWFQM 150 G +AI++ T + A +P++ + ID P+ ++ V Sbjct: 73 FIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNIDTLPEKQAFVASNEVDS 132 Query: 151 GYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG---SPVRIVDIALGDN 207 G R + + GK V++M G + ++ + +A + IV + Sbjct: 133 GTLQTREICKLLDGKGKAVVIM-GELSNQAARMRTKDIHDVLATDQCKGIEIVQEQTANW 191 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK------TPLTVVSFYLSHQV 261 +L+ L E D V E A+G + LK + + + Sbjct: 192 QRTQGADLMTNWLSAGIEFDAVIAN--NDEMAIGAIQALKAAGRSMDSVVIGGIDATDDA 249 Query: 262 YRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 + G + ++ V QG+ +++ A++ +G++V + P ++T N + Sbjct: 250 LAAMAAGELDVSVFQDAVGQGKGSIDAALKLSKGEAVERKIYIPFELVTKANLAEFQGKN 309 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 110/283 (38%), Gaps = 16/283 (5%) Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 + + P+ + ++ + G + A+ G + ++ Q ID GA+AI Sbjct: 30 IAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMT--HDDDANKQSEMIDTAIGRGAKAI 87 Query: 107 LL---GSSTTSFPDLQKQVASLPVIELVNAIDAPQV-KSRVGVPWFQMGYQPGRYLVQWA 162 +L G+ + + + A +P + I+A V +++ +Q + V+ Sbjct: 88 ILDNAGADASVAAVKKAKDAGIPSFLIDREINATGVAVAQIVSNNYQGAQLGAQEFVKLM 147 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLE 221 K N + + G ++ + +G+ I P ++ V + + ++ +L+ Sbjct: 148 GEKG-NYVELVGKESDTNAGIRSQGYHDVIDDYPDLKSVAKQSANWSQTEAYSKMETILQ 206 Query: 222 RHPEIDVVAGTAIAAEAAMGEGRNL----KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQ 277 +P+I V + AMG L + + VV F S+ V +K G + Sbjct: 207 ANPDIKGVI--SGNDTMAMGAIAALQAAGRKDVIVVGFDGSNDVRDSIKSGGIKATVLQP 264 Query: 278 MVWQGELAVEQAIRQLQGQSVSDN--VSPPILVLTPKNADREH 318 Q +LAVEQA ++ ++ +++ NA + Sbjct: 265 AYAQAQLAVEQADAYIKNKTTPKEEKQLMDCVLINADNAGKLE 307 >UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z738_9FIRM Length = 369 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 58/326 (17%), Positives = 120/326 (36%), Gaps = 20/326 (6%) Query: 20 DNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQ---EAARRYGVD 76 D + + +K K K+ A+ S + +W + G + + + GVD Sbjct: 48 DTVKDSKTIEDIRKDNGDEVKVKGGLKMGAIAKSFSNEFWRNFKNGYEQSEKVLKDAGVD 107 Query: 77 LKVL--EAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT---SFPDLQKQVASLPVIELV 131 + + S QQ D G A++L + + + +P I + Sbjct: 108 VSIKIDGTTDESDEIGQQTMTDNLVNQGYNALMLSPISDSNLTASVDNAKGKKIPTINVN 167 Query: 132 NAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAA 191 + + A VG +Q G ++ + K +V ++ G A ++E GF+ Sbjct: 168 DGLIASA-DYFVGPDAYQNGELAAEWVSKQLGDKG-DVAIVIGMAKAFAARERTAGFKGW 225 Query: 192 IAG--SPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL--- 246 I S + +V D D + + L ++++P++ + + A+G + Sbjct: 226 IKDNNSGLNVVAEQNADWDRQKAKELASTWIQQNPDLKAIFCN--NDDMALGVVEAVEEA 283 Query: 247 KTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPI 306 K + VV + Y ++ G++ + ++A E +R L GQ + P Sbjct: 284 KKDILVVGVDGIGEAYDSIRAGKLDATVDSFGYYMSQVATEVTLRVLAGQDIPRVTHTPQ 343 Query: 307 LVLTPKNADREHIRRSLSPGGFRPVY 332 ++ N D+ + + G P Y Sbjct: 344 ALIDKTNVDK-DAKDII--GWTDPKY 366 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 114/291 (39%), Gaps = 17/291 (5%) Query: 41 AKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQ 100 R A Y ++ + ++ +N ++ + G + L+ Q QI Q + Sbjct: 41 NTRKKLFGATYMTMNNEFYKIVNNQIRMQVEKNGDQMITLDPA--LDQKKQNEQIKQLVK 98 Query: 101 WGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQVKS-RVGVPWFQMGYQPGR 156 +AI L + + A +PVI + + + + + + ++ G + Sbjct: 99 RKVDAIFLNPVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSDLVAMTIVSDNYKAGVLCAK 158 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 +++ N++L+ A + + + GF I + +I+ A IE Sbjct: 159 EMMKQ--KDQANIVLLTHNA-ARSAVDRINGFLDTIKNNKNYKILASADTQGQIERALPK 215 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEGRNL-----KTPLTVVSFYLSHQVYRGLKRGRV 270 + +++E + IDVV G + AAMG L + + V S + + +K G + Sbjct: 216 VDKIIEEYQNIDVVMG--LNDPAAMGALAALDSKGAREGVLVYGIDGSPEGKKLIKEGMM 273 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 A+ + AV A + LQG+ V + ++T KN ++ I R Sbjct: 274 TGTAAQSPKQMADTAVNAAYQILQGEKVEKKKVISVQMITKKNVEQTDISR 324 >UniRef50_UPI0001973330 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973330 Length = 325 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 60/303 (19%), Positives = 123/303 (40%), Gaps = 13/303 (4%) Query: 32 TVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 A+ + + +++ + S + +++ S+ G AA Y V L ATQ Sbjct: 23 GGTAAHMSRRQERYQVAMIVKSTESAFFQSVFAGAGAAATEYNVSLITEGPESEEDYATQ 82 Query: 92 QAQIDQCKQWGAEAILLGSSTTSFPDLQ---KQVASLPVIELVNAIDAPQVKSRVGVPWF 148 I + + GA+A+++ + + +PV+ + + +++ VK R+G Sbjct: 83 NEMIYKAVENGADALVISAVDFNKNAEAVDWAAAKGIPVVVIDSDVNSSAVKFRIGTDNE 142 Query: 149 QMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDN 207 + G R + G+ L + ++ +N ++ +GFR V+ + + Sbjct: 143 EAGRMAARAALDGTDGE-LFIGIVNFDENTANGQQREQGFREEAKKDSRVKEIVTINVPS 201 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEG-----RNLKTPLTVVSFYLSHQVY 262 I+ R + +L HPEI+V+ T ++G G N K ++VV+F + Sbjct: 202 AIDDTRAATKGLLSTHPEINVI--TTFNEWTSLGVGWAIRDLNKKDDISVVAFDSNAVSV 259 Query: 263 RGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDN-VSPPILVLTPKNADREHIRR 321 L+ G V G L VE+A L + V + + ++T +N + ++ Sbjct: 260 GMLETGEVDALIVQNPYAMGYLGVEKAWEILSRRGVEGDKLDTETTLVTRENMFLDEYQK 319 Query: 322 SLS 324 L Sbjct: 320 ILF 322 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 110/290 (37%), Gaps = 14/290 (4%) Query: 32 TVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 Q +T +KA +K+ + + + Y ++ + G++ A + G + Q Sbjct: 67 GAQIATSVKAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTADSVEEQ 126 Query: 92 QAQIDQCKQWGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQVKSRVGVPWF 148 ++ +AI++ + ++ + Q A + V+ + GV ++ Sbjct: 127 VQLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAEDTFLRT-GVDYY 185 Query: 149 QMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS-PVRIVDIALGDN 207 + GY + + GK +++ GP A + E + G ++ + IV + Sbjct: 186 ESGYTMAKAVADKLGGKG-KFIILEGPAGASNAIERLNGINTGLSEYEGIEIVASQTANF 244 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK----TPLTVVSFYLSHQVYR 263 ++ + +++++ +ID V E+A+G + L + + V F S Sbjct: 245 KRTEGMSVTENLIQQYTDIDAVIAC--NDESALGAVQALTAANMSDVLVCGFDGSVDATN 302 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKN 313 +K G + + G +A A++ L ++ + P T N Sbjct: 303 AVKEGTMFATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIPFP--TAAN 350 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 111/290 (38%), Gaps = 10/290 (3%) Query: 37 TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 + + + Y+ ++ G + AA+ G + + Q +QI+ Sbjct: 17 ATSAFAADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVHYIPTKPDSIPEQLSQIE 76 Query: 97 QCKQWGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 AI+ Q A +PV+ + + + + VG + +G + Sbjct: 77 DVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVNVTDRSAGGKFLAFVGADDYSLGLE 136 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG-SPVRIVDIALGDNDIEIQ 212 GRYL++ GK NV+++ G + + + V GF A+ V+++ + Sbjct: 137 TGRYLLKEMGGKG-NVVILEGVKGSLTNVDRVRGFNDALKEFKDVKLLASQPANYQRLQG 195 Query: 213 RNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKT---PLTVVSFYLSHQVYRGLKRGR 269 +++ +++ HP+ID V A A+G L VV + + +K G+ Sbjct: 196 LQVMENLMQSHPQIDGVL--AANDAMAIGAIEALDGANRKAKVVGINGTKEAVDAIKSGK 253 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHI 319 ++ + QG + AIR L+ +++ + V V+ N + Sbjct: 254 LLASGDYNGFLQGCIGTMVAIRALRKETIVNEVVLKPTVVNASNYKPYDV 303 >UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW4_9BACT Length = 935 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 50/330 (15%), Positives = 109/330 (33%), Gaps = 43/330 (13%) Query: 1 MRV---LLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDS 57 M+ L+ + + +L + + R + + S +D Sbjct: 1 MKRKLHLIIYVAIIVLLTGCA---------------------QKPRKFVIGVSQCS-EDI 38 Query: 58 YWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF-- 115 + LN ++ L V A Q Q++Q G + +++ + S Sbjct: 39 WRDKLNDELKM-GEYLNDSLIVKLASSNDDNVLQNKQVNQFIDEGVDLLIVSPNQLSAIS 97 Query: 116 -PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 + +PVI ++ + + +G + +G G ++ Q GK ++ + G Sbjct: 98 KSVERAYDKGIPVILYDRKTNSDKYTAFIGCDNYTIGKSMGTFIAQQLQGKG-RIVEISG 156 Query: 175 PDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA 233 + + + E GF AI P +++V G+ E ++ +L++ + D V A Sbjct: 157 LEGSSPALERHRGFMDAIKPYPGLQVVASEEGNWKEEGGIQAMKRILKQTQDFDYVF--A 214 Query: 234 IAAEAAMGE-----GRNLKTPLTVVSFYLSH---QVYRGLKRGRVIMAASDQMVWQGELA 285 A G +K ++ G + G+ Sbjct: 215 HNDCLAWGAYVAARQMRVKRNYKYTGVDGMATEGGGLELVRDGIFEASYLYPTK--GDEV 272 Query: 286 VEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 + A++ L+ Q + ++T NA Sbjct: 273 IALAMKILKHQPYERDNYLSTSIITQANAA 302 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 111/297 (37%), Gaps = 18/297 (6%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 K+ + K+ L S + +W ++ +EAA G++++V EA Q ++ Sbjct: 85 KSGQGEKIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTMV 144 Query: 100 QWGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAID-------APQVKSRVGVPWFQ 149 G +AI+L + + A +PVI L +D + ++ V + + Sbjct: 145 TMGFDAIILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKITVNFEE 204 Query: 150 MGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG-SPVRIVDIALGDND 208 G ++ V ++ G + AG S G + V +V D D Sbjct: 205 QGSTVANDMISRM-EDGGKVAILAGLEGAGQSVGRTNGAKTVFENTEGVELVAAQACDWD 263 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK----TPLTVVSFYLSHQVYRG 264 E +++L HP++ + A+ + L+ + V + Sbjct: 264 TEKAYEATKDILTAHPDLKGIFAC--NDNMALAAVQALQEMGNKDVMVYGVDYTTDAKAA 321 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 ++ G ++ + + + A E A+ +QG++ D V P+ ++T N + Sbjct: 322 IEDGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKDPVYLPLTLVTQDNVADFEGWK 378 >UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG6_9FIRM Length = 331 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 51/325 (15%), Positives = 117/325 (36%), Gaps = 14/325 (4%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 + ++ +LF+ D+ DA+ + + K + S + ++ ++ Sbjct: 10 LCTAMVSTLFVGCGGGNDSADTSADAETTEKTEESADAGSGSHKCGFVVGSFEHVFYQTI 69 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--PDLQK 120 G++ A+ G++ V +A +AT ++ G EAI L + + P ++ Sbjct: 70 RDGIESKAKELGMEAIVTDAELDPNIAT--NKVQDLTAQGCEAIALSCNDAAGVKPAIEN 127 Query: 121 QVA-SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAG 179 A + + + D+ + VG ++ G G+ L+++ V ++ A Sbjct: 128 ADAEGVAMFTFDCSTDSEAINCFVGTDNYKGGQLGGQELLKY-SEDGDTVGIICY-PTAS 185 Query: 180 GSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTA-IAAEA 238 + G + +V D + +++ ML +P++ V AA Sbjct: 186 SCLDRQNGALDVLKDEDRTVVYDNDYQGDANKAQEIMENMLTANPDMAAVFCVGDPAATG 245 Query: 239 AMGEGRNLKTPLTVVSFYLSHQVYRGLKR----GRVIMA-ASDQMVWQGELAVEQAIRQL 293 A+ + + ++ F + + + G+ ++ + GE VEQ + L Sbjct: 246 ALAAIKAAGSDCKIIGFDGNPEAKEAISDTEGNGKWWVSEIAQNPTLIGETIVEQMQKYL 305 Query: 294 QGQSVS-DNVSPPILVLTPKNADRE 317 V + V+ N E Sbjct: 306 DEGKVDAAEIPIDPYVIDASNVADE 330 >UniRef50_Q1AUT8 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinobacteria (class) RepID=Q1AUT8_RUBXD Length = 351 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 106/290 (36%), Gaps = 9/290 (3%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 ++ + Y + + + G+++A R GVD +++ Q +++ Sbjct: 62 VENGDKLVIRVSYHNTSLGFANPIREGVEKAKRELGVDAELIGP-ANGSAQEQVSELQTL 120 Query: 99 K-QWGAEAILLGS--STTSFPDL-QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQP 154 Q + + + S + P + Q A +P+I + + VG Q G Sbjct: 121 ISQQKVDGLAVSSASNDALKPVIAQAYNAGIPIISFNTNNPGSKQMAFVGQDLVQSGRFE 180 Query: 155 GRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEIQR 213 L + + V++ AG S + GF A + G+ ++I N+ Sbjct: 181 AEQLRKELGDRKGKVVVFSVDTGAGWSNDRFSGFEAGMEGAEGIQIEGPINSGNEPRQAF 240 Query: 214 NLLQEMLERHPEIDVVA---GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRV 270 N +Q + +P+ +A ++ A A + K + VV F + Q ++ G + Sbjct: 241 NAVQNTMTANPDAIAIASLDCCSVDAAAKWVQQNGKKGEIIVVGFDVLPQTADFIRNGVI 300 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 S V QG +V+ L+ +V+ ++ N D + Sbjct: 301 QFTISQNPVEQGYQSVKILNDFLKKNKPLRDVNTGTKLVDKSNIDEVPLE 350 >UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Firmicutes RepID=C8WV69_ALIAD Length = 349 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 92/296 (31%), Gaps = 24/296 (8%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 + YW GMQ AA+ GV A + + + Q Sbjct: 57 TYYMVTFLSGIEYWKGCFAGMQAAAKDLGVKAVFTGAP-QYDINQEVTTMQQVIAKHPAG 115 Query: 106 ILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 IL+ S Q A +PVI + + + +G + G + YL Q Sbjct: 116 ILVTSINAQAMTPVINQAIAAGIPVISFDSDAPQSKRYAYLGTSNIEAGQKAADYLGQAL 175 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEML 220 G V ++ + V+GF+ +A V++V + G++D + +L Sbjct: 176 GGHG-EVAVIT-TPGELNLDQRVQGFKDEMAAKYPGVKVVAVQNGNSDQIKTAQVTSALL 233 Query: 221 ERHPEIDVVAGT--AIAAEAAMGEGRNLK-TPLTVVSFYLSHQVYRGLKRGRVIMAASDQ 277 + +P + + T AA K + +VSF +K G++ + Sbjct: 234 QTYPNLAGIFCTEADEGTGAATAVQEAGKTGTVKIVSFDTDKATLNAIKSGQITATVAQG 293 Query: 278 MVWQGELAVEQAIRQLQG-------------QSVSDNVSPPILVLTPKNADREHIR 320 G + V V + ++T N + + Sbjct: 294 TWNMGFWGLMDLFAIHHNLVHPVANWQQSGVDPVPPEVDTGVTIVTKSNVNAYLQQ 349 >UniRef50_B7DPH3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DPH3_9BACL Length = 329 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 63/321 (19%), Positives = 130/321 (40%), Gaps = 16/321 (4%) Query: 7 LLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGM 66 ++++ ++ + + + + + + D +++S+ YG Sbjct: 5 AVVAMGVVAGCG-TTANTAGSNSASLSSSQQSAASSKQFVIGFVPGETTDPFFISMAYGA 63 Query: 67 QEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVA 123 Q+ A++ GV L A YS + Q ++ A+++ + + P Q A Sbjct: 64 QQEAKKLGVKLIYEGASTYS-PSAQTPYVNAMVSRHVNALIVCPTDLTAMIPPIKQAVNA 122 Query: 124 SLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSK 182 + V+ + I DA + SR+ Q G +L AHG+ + V ++ K Sbjct: 123 GIKVLTADSTISDASLLTSRITSDNEQGGAAAADFLGSMAHGQGV-VGVLDPSPGISTDK 181 Query: 183 EMVEGFRAAIAGSPVRI-VDIALGDNDIEIQRNLLQEMLERH-PEIDVVAGTAIAAEAAM 240 V+GF A + +I V I + L Q+++ + + + GT +A Sbjct: 182 ARVDGFIAEMKKKYPKIKVVIEYDNEQTTQAEQLAQDLMLHYGKSLVGIFGT--DDTSAS 239 Query: 241 GEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQG 295 G + +++ + +V + + LK G + + + + +GELAVE A+ L+ Sbjct: 240 GAAQGVRSSGSATHVNIVGYDAEPAEVQDLKEGMISALIAQKPMIEGELAVEYAVEALEH 299 Query: 296 QSVSDNVSPPILVLTPKNADR 316 +SV V P +V+T N + Sbjct: 300 KSVPKFVQLPNVVITKANLAQ 320 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 108/288 (37%), Gaps = 14/288 (4%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + + +L+ ++ + ++ + GV + ++A G S TQ +QI+ Sbjct: 26 AKELTIGLAVANLQADFFNQIKQSVEAEGKARGVKIITVDAQGNSS--TQVSQIEDLITR 83 Query: 102 GAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 +A++ + + P + A +PVI + + + Y+ Sbjct: 84 QIDALIYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPGDTFIASDSVAGAKALAEYV 143 Query: 159 VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQ 217 + GK + ++ G + +GF+ + G P +++V + + + Q Sbjct: 144 GKVTDGKG-RIAILQGQLGTTPENDRAKGFQEGLKGFPGLKVVAEQPAEWAQDKGFAVAQ 202 Query: 218 EMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIM 272 ++L+R P I V G A A+G + +K P+ VV F + + G + Sbjct: 203 DLLQRDPNITVFFGRA--DAMALGAAQAVKVANLSQPVVVVGFDGDVAGLKAVASGVLQA 260 Query: 273 AASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 + Q G +AV A+ G++V ++ T N + Sbjct: 261 TMTQQTQKMGRMAVASALDLKAGKAVPKEQLLETVLTTKDNVAPFLQQ 308 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 59/329 (17%), Positives = 131/329 (39%), Gaps = 23/329 (6%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 ++++F+LL ++ +L + ++ Q + K A Y + + ++ Sbjct: 7 KIVIFILLIFTVVFILINLKVLEGNGGENSARQIGS------RKKFGATYMTTNNRFYEI 60 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST---TSFPDL 118 +N ++ G L +A Q QI + + +AI + + Sbjct: 61 INDEIRSVVESNGDILVTRDAA--LDKNKQMQQIYEFIKLKVKAIFINPVDWKQIKPALI 118 Query: 119 QKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + A +PVI + + D V V + G Q +YL++ N++L+ Sbjct: 119 AAKNAGIPVIVVDTPVYDDKLVACTVISDNYDAGVQCAKYLMKS--KSKANIMLIEHSK- 175 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 A + ++GF I S +IV + ++ +L+ +++++H +D + A+ Sbjct: 176 AKSGIDRIKGFVDTIGASKQYKIVAAGDSEGQLDKTMSLVDDLIKKHTNVDAIM--ALND 233 Query: 237 EAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIR 291 +A+G LK + V S + + G + ++ G +A E+A Sbjct: 234 PSALGALAALKENGLLGKVMVFGVDGSPEAKTMIHDGFMTATSAQFPNKIGHIAAEKAYD 293 Query: 292 QLQGQSVSDNVSPPILVLTPKNADREHIR 320 L+G+ + +V PI +++ +N + I Sbjct: 294 ILKGKRLKRDVIVPISLISKENLLKYEIS 322 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 108/299 (36%), Gaps = 22/299 (7%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQC 98 A A + D++ L GM + ++ GV L+V +A + +A QQ+QI Sbjct: 16 TAAHAETVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQVEDAQ--NDVAKQQSQIQNF 73 Query: 99 KQWGAEAILLGSSTTSFPD---LQKQVASLPVIELVNAI----DAPQVKSRVGVPWFQMG 151 +AI++ T A +P++ + P ++ V G Sbjct: 74 IASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVDSLPDGQAFVASDETVAG 133 Query: 152 YQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG---SPVRIVDIALGDND 208 + + + GK N ++M G + ++ + + + + +V+ + Sbjct: 134 TLEAKEVCRLLGGKG-NAVIMMGELSNQAARMRTQSAKDVLKTDECKGISVVEEQTANWQ 192 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK------TPLTVVSFYLSHQVY 262 +L+ L E + V E A+G + LK V + Sbjct: 193 RTQGSDLVTNWLSSGIEFNAVIAN--NDEMAIGAIQALKAAGKDMKSYVVAGVDATQDAL 250 Query: 263 RGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 ++ G + + QG+ A++ A++ ++G + V P ++TP+N + Sbjct: 251 AAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGDKIEKKVYIPFQLVTPENVKDYVAKN 309 >UniRef50_Q484F8 Periplasmic protein TorT n=2 Tax=Alteromonadales RepID=Q484F8_COLP3 Length = 356 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 133/354 (37%), Positives = 195/354 (55%), Gaps = 16/354 (4%) Query: 1 MRVLLF----LLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKR----AWKLCALYP 52 M++LL ++ LF L A N + ++ + + A + L + KLCA+YP Sbjct: 1 MKILLVLLLNIVYCLFFLSTAVAANQDQLNNNRATSTIAVSELSTSKVSTGKIKLCAVYP 60 Query: 53 SLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST 112 LKDSYWLS+N+GM E A++ ++LKVL+AGGY Q QI+QC W A AIL+GS Sbjct: 61 HLKDSYWLSINFGMTEQAKQRSIELKVLDAGGYQNKDEQLRQIEQCIHWQASAILVGSVN 120 Query: 113 TSFPDLQKQ--VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQW----AHGKP 166 + + PV LVN I + R GV W+QMGYQ G YLV+ + P Sbjct: 121 FEALNQKLAQVNKHTPVFALVNEIATNNISGRTGVSWYQMGYQLGEYLVKHHQNNFNTTP 180 Query: 167 LNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEI 226 + PGP GGS + +G +AA+ SP+ I+ I G N+ Q +LL++ L+++ I Sbjct: 181 ATLAWFPGPKRGGGSLQSTKGLQAALVNSPIEIIAIEHGLNEKITQFSLLKDTLKKYNNI 240 Query: 227 DVVAGTAIAAEAAMGEGRNLKT--PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGEL 284 D +AG A+ AE A+ E L ++S YLSH VYRG+KR +++MA SDQMV QG++ Sbjct: 241 DYLAGNAVMAEMAINEVGRLPKEQQPEILSHYLSHGVYRGIKRHKILMANSDQMVLQGKM 300 Query: 285 AVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTS 338 A+ QA+ L+ V +P I+ + + SLSP F+P+Y + T Sbjct: 301 AINQAVDYLKIGKVKTLQAPTIITIDQATIKKLKTELSLSPSNFKPIYSIKATE 354 >UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6Q9_9SPHI Length = 918 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 111/329 (33%), Gaps = 39/329 (11%) Query: 7 LLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGM 66 LLL + L +FS + K A+ + D + ++ M Sbjct: 8 LLLFITALLSFSCNQKQE-----------------KHAYLIGFSQCVGSDLWRKTMLDEM 50 Query: 67 QEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVA-- 123 + + G L A + TQ Q+ + G + +++ + P + Sbjct: 51 KMELSLHPGAKLVY--ADADNNSNTQIKQVKEMLDQGIDLLIISPNEAK-PLTEIVEQTY 107 Query: 124 --SLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGS 181 +PVI + + VG +Q+GY +YL G P N+L + G + + Sbjct: 108 SDGIPVIVIDRKTTSNLYTCYVGADNYQIGYMASQYLGNTISG-PANILEVMGLPGSSPT 166 Query: 182 KEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAM 240 E +GF + P ++I GD L ++ ++ +IDVV A A Sbjct: 167 IERNKGFNDGLKKFPNLKIKSQVYGDWMKPNAERQLSKISDQLNDIDVVF--AHNDNMAF 224 Query: 241 GEGRNLKT-----PLTVVSFYLSHQV---YRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 K + + + + G + + G+ A+ AI+ Sbjct: 225 AAQSVFKKLGIASQAKFIGIDATPGAGGGLQMISNGLIDASMLYPTG--GKEAITTAIKI 282 Query: 293 LQGQSVSDNVSPPILVLTPKNADREHIRR 321 + S + P LV+ N +++ Sbjct: 283 MDKIPFSKELILPSLVIDSSNVRLMNMQW 311 >UniRef50_Q7MEN8 ABC-type sugar transport system, periplasmic component n=29 Tax=Vibrionales RepID=Q7MEN8_VIBVY Length = 337 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 135/315 (42%), Positives = 194/315 (61%), Gaps = 14/315 (4%) Query: 36 STPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQI 95 STP+ A KLCA+YP LKDSYWLS+NYGM A + V+L+VLEAGGY A QQ Q+ Sbjct: 25 STPVYAAE--KLCAIYPHLKDSYWLSVNYGMVSEAEKQKVNLRVLEAGGYPNTAKQQQQL 82 Query: 96 DQCKQWGAEAILLGSSTTSF--PDLQKQVASLPVIELVNAI-----DAPQVKSRVGVPWF 148 C +WGA+AILLG+ +LQ+ S+P+ VN + + +K VGV W+ Sbjct: 83 MLCSKWGADAILLGTVDPMAFNENLQQWTGSIPIFATVNQLVLNETQSKNLKGTVGVDWY 142 Query: 149 QMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGD 206 MG+Q G YL Q A NV+L+ GP ++GG+K + +GFR AI GS + I++ D Sbjct: 143 WMGHQAGHYLAQKHPAGSGTKNVVLLLGPKSSGGTKPVDKGFRDAIKGSDIHIMESFWAD 202 Query: 207 NDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR--NLKTPLTVVSFYLSHQVYRG 264 ND E+QRNL+Q+ ++ P++D + G+A+A EAA+ E R N + ++S YLSH +YRG Sbjct: 203 NDKELQRNLVQQAIDT-PDVDYLVGSAVAMEAAISELRSANKTGQIGLISTYLSHGIYRG 261 Query: 265 LKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 L R ++ A +DQMV QG L+V+QA+ L+ + + SP I LTP + I SLS Sbjct: 262 LLRNKIEFAPTDQMVLQGRLSVDQAVNYLRHKPYQIHSSPTIEPLTPNTLNFSTIEDSLS 321 Query: 325 PGGFRPVYFYQHTSA 339 P +RP++ + + Sbjct: 322 PSEYRPIFDVKAVES 336 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 50/360 (13%), Positives = 115/360 (31%), Gaps = 50/360 (13%) Query: 1 MRVLLFLLLSLFMLPA--FSADNLLRWHDAQHFTVQASTPLKAKRAWK------------ 46 MR + + + A S + Q S+ + K Sbjct: 16 MRKKGLCMAATLLAAAIFCSGCSTDTSPSGNTTVGQQSSAAQTGETVKKETDTSSEKEAP 75 Query: 47 ---------------LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 + + +Y ++ M++ A + G L V +A A Q Sbjct: 76 AQDGGNKIVNVSDYLIGYSQLANTGTYRIAETNSMKDEAEKRGFKLIVTDAQ--DNTAKQ 133 Query: 92 QAQIDQCKQWGAEAILLGSSTTSFPDLQKQVAS---LPVIELVNAIDAP---QVKSRVGV 145 + ++ + ++L + Q A +PVI + + + Sbjct: 134 VSDVEDLIAQNIDLLILSPREFEGLETALQTAKENSVPVILVDRLAKGEAGVDYVTYIAT 193 Query: 146 PWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS-PVRIVDIAL 204 + G G +L G N++ + G + +++ GF + + ++I+ Sbjct: 194 DFVWEGQAAGEWLKDKTGGT-CNIIELTGTVGSSSAQDRATGFAGVVDQNEGMKIIASQT 252 Query: 205 GDNDIEIQRNLLQEMLERH-PEIDVVAGTAIAAEAAMGEGRNLK-------TPLTVVSFY 256 G+ + + +++ +L+ H E+D V + A+G + +K + V+ Sbjct: 253 GNFERSEGQKVMENLLQAHGGEVDAVFC--HNDQMALGAVQAIKAAGYKPNEDILVIGID 310 Query: 257 LSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 ++ + G + G + + + L GQ V + +V+ NA Sbjct: 311 GEMDSFKSVIAGEMSATVVSSP-MYGPITFDTVEKILAGQEVPEQTIMEGVVVDAGNAQE 369 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 206 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 112/323 (34%), Gaps = 31/323 (9%) Query: 6 FLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYG 65 LL SL +L A A + + +L + +++ LN G Sbjct: 23 LLLCSLIVLVGC-------------EKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDG 69 Query: 66 MQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS---FPDLQKQV 122 +++ +G L L+A Q+ + + AI L + + Sbjct: 70 LKQVIDEHGDRLVTLDAQ--FSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARN 127 Query: 123 ASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGS 181 A +PVI + + DA V ++V G + L V ++ N Sbjct: 128 AKIPVIVVDAPVPDADLVLAQVASDNVAAGRLAAQALGDA--RPQAKVAILQYSVN-KAC 184 Query: 182 KEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAA 239 + V GF +A S I+ E R +++++L R P++D V I A Sbjct: 185 VDRVAGFTDVLAKSFPGATIIARQDVKGTSEATRPVMRDLLGRFPDLDAVF--PINDPGA 242 Query: 240 MGE-----GRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 +G + VV+ S + + + G + ++ G LA A L Sbjct: 243 IGCVSAIDAAGRSGKVLVVTVDGSREAAQFILNGGIHSTSAQFPKKIGSLAAGAAYDHLA 302 Query: 295 GQSVSDNVSPPILVLTPKNADRE 317 G+ V + P+ ++T NA Sbjct: 303 GKPVDKEIKVPVTLVTKANAAEF 325 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 206 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 113/288 (39%), Gaps = 18/288 (6%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 + ++ + + + + A+ G+ ++ +A G + Q Q+ G +A Sbjct: 23 TIGVSMAYFDQNFLTIIRHSIDKEAKARGISVQFEDARG--DVGRQADQVQNFISAGVDA 80 Query: 106 ILLGSSTTSF-PDLQKQ--VASLPVIELVNAIDAPQVKS---RVGVPWFQMGYQPGRYLV 159 I++ ++ P + K A +P++ + ++ + VG Q G L Sbjct: 81 IIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDSKLPAGVVFVGSDEKQSGTLQMEELA 140 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQE 218 + A+ + NV +M G G+ + + +A P +++V + +L+ Sbjct: 141 RLANYQG-NVAVMIGNLTDAGALQRTKDVEQVVAKYPKMKVVQKQSANYSRSEGMDLMLN 199 Query: 219 MLERHPEIDVVAGTAIAAEAAMGEGRNLK------TPLTVVSFYLSHQVYRGLKRGRVIM 272 + ID+VA E A+G L+ + + V + + L G++ + Sbjct: 200 WITNGESIDIVAAN--NDEMAIGAIMALQQAGKQGSKVLVGGIDATPDGLKALSSGKMQV 257 Query: 273 AASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 V QG+ +V+ A R ++G+ + P ++TP N + + Sbjct: 258 TVFQDAVGQGKASVDVAQRMIKGEKLDPYYWIPFELVTPANMQKYAAK 305 >UniRef50_A3DCF2 Sugar ABC transporter (Sugar-binding protein) n=4 Tax=Clostridiales RepID=A3DCF2_CLOTH Length = 321 Score = 206 bits (525), Expect = 8e-52, Method: Composition-based stats. Identities = 53/329 (16%), Positives = 115/329 (34%), Gaps = 16/329 (4%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ L LLL++ ++ F+A N P + YW Sbjct: 1 MKRFLVLLLAISLIFTFTACNSGSGSGNGQAKGYVGDPSDEY-----YMVTFLSGIDYWK 55 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD--- 117 G ++AA+ GV K + ++ Q A ++Q + I + + ++ Sbjct: 56 YCFEGFEDAAKAIGVTAKYTG-QTDTDVSGQVAVLEQVIAQKPKGIAVTAVNSTALADTI 114 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + V+ + + +G + G + +LV + K + ++ Sbjct: 115 NSAIEQGISVVCFDSDSPTSNRSAYLGTGNYAAGQKAAEFLVPLVNYKG-KIAVL-YTVG 172 Query: 178 AGGSKEMVEGFRAAIAGSPVRI-VDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 A S+ V+GF + + + D + + L L+ + +I V A Sbjct: 173 AENSESRVQGFEDWCKQNAPEVSLVKVNDAGDTTVAADNLAAALQANDDIVGVFCVDGVA 232 Query: 237 EAA-MGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQG 295 A K L V++F + V +K G + + M G ++ + G Sbjct: 233 GTAGPTAVAESKKDLRVLAFDVDVTVLDKVKSGEIDGTVAQGMYNMGYWSLMMLYTEANG 292 Query: 296 ---QSVSDNVSPPILVLTPKNADREHIRR 321 +++ N+ ++++T N D + ++ Sbjct: 293 LSSKALPGNLDTGVVIVTKDNVDEYYPKK 321 >UniRef50_C6PMK8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PMK8_9CLOT Length = 329 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 97/288 (33%), Gaps = 9/288 (3%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGA 103 K+ + + YW + G ++AA++ + S I+ Sbjct: 39 KPKITLISHVYSNPYWKYIKLGAEKAAKQRNAVIDFQGPDTASAGEG-IKFINMAYAAKV 97 Query: 104 EAIL--LGSSTTSFPDLQKQVAS-LPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQ 160 I+ + P + K +A +P++ + + + + + VG G + ++ Sbjct: 98 SGIITYVQDEAMYKPVIDKVLAGGIPIVTVDSDAENSKRLAYVGTDNVTAGRVGAKEMIH 157 Query: 161 WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIA-GSPVRIVDIALGDNDIEIQRNLLQEM 219 G NV ++ G N E V GF I S + I +I D+ + +++ Sbjct: 158 HV-GIYGNVGIIMGGKNVKNQIERVNGFTEYIKSNSKLNISEIESSDSYLLEAELATKKI 216 Query: 220 LERHPEIDVVAGTAIAAEAAMGEG---RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASD 276 L + +I V T+ + + ++ F + +K G + Sbjct: 217 LINNKDIKAVFCTSALDGQGAAKALISMGAAEKVKIICFDDLPETLDYIKNGTITSTIVQ 276 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 G AV + ++G+ ++V++ N D R Sbjct: 277 DPYGMGYKAVNIIMDIMEGKDTKGVFLTDVIVVSKDNIDEFKKTRGEY 324 >UniRef50_C8XH32 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XH32_NAKMY Length = 350 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 60/342 (17%), Positives = 118/342 (34%), Gaps = 26/342 (7%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQA----------------STPLKAKRAW 45 +VL + F + A ++ T + P KA + + Sbjct: 5 KVLTATAVGAFAVMLTVAGCSSSKPESSAGTSAGSGSAAAATASAATGSVAAPTKAGKDY 64 Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 + + D +++++ G++ A + GV + Q +D +A Sbjct: 65 NVAFIQGVAGDEFYITMQCGIEAEAAKLGVTVNTQGGQ-KFDPTLQTPILDSVVASKPDA 123 Query: 106 ILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQ-VKSRVGVPWFQMGYQPGRYLVQW 161 IL+ + + P A + V+ + + P S+V G + + Sbjct: 124 ILIAPTDVTAMQRPLENAAAAGIKVVLVDTTTEDPSFAVSQVSSDNEGGGAAAFKAIKDK 183 Query: 162 AHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQRNLLQEML 220 + VL++ V+GF A+ S + + ND L+ L Sbjct: 184 -NPNGGKVLVISTDPGISTVDARVKGFEDAVGKDSTFDYLGVQYSHNDPATAAQLVTAAL 242 Query: 221 ERHPEIDVVAGTAI--AAEAAMGEGRNLK-TPLTVVSFYLSHQVYRGLKRGRVIMAASDQ 277 ++ P+I + T I A ++ G + K +T+V F + LK G V + Q Sbjct: 243 QKDPDIVGIFATNIFSAEGSSTGVKQAGKSDQMTIVGFDAGPNQVKALKDGTVQALVAQQ 302 Query: 278 MVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHI 319 G ++QAI L G +++ + ++T N D Sbjct: 303 PATIGTDGLDQAIASLDGGTITPKIQTGFTIITADNVDSSDA 344 >UniRef50_A8F3L8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F3L8_THELT Length = 321 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 53/340 (15%), Positives = 114/340 (33%), Gaps = 40/340 (11%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 MR L +L +F L A A+++ + + +W Sbjct: 1 MRKFLLVLAMVFTLSALVFG-----------------------AYEIAFVVKATDSDFWQ 37 Query: 61 SLNYGMQEAARRYG--VDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST--TSFP 116 G + A V + V + + Q A ++ + +AI++ S++ + P Sbjct: 38 YTIVGAKNAEHDLQGLVKVTVYGPPSEADIDKQVAILEDVIRTKPDAIVISSTSSHATAP 97 Query: 117 DL-QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKP----LNVLL 171 L + + +I + N + S + G +V+ V L Sbjct: 98 ALNKAYQQGIKIILIDNFVYDTGYHSFLATNNKVGGGLAAEKVVELLKKSGRPLKGKVGL 157 Query: 172 MPGPDNAGGSKEMVEGFRAAIAG--SPVRIVDIALGDNDIEIQRNLLQEMLERHPE-IDV 228 + + +GF A + + I+ DNDI ++++ + + + Sbjct: 158 ISSMAGVQVLIDRDDGFTARLKELAPDLEILPTRYVDNDIAKAAAAAEDLITAYGDQLVA 217 Query: 229 VAGTA--IAAEAA-MGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELA 285 + A + E +NL+ + V++ Q L+ G + G Sbjct: 218 IFADNNHTGDGVARVIEEQNLQDKVIAVAYDSDPQEVEALRNGSLKALIVQDPHGMGYKG 277 Query: 286 VEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 V A + G+++ + V+T +N D +++ L P Sbjct: 278 VMFAFMAINGETLPSYFDTGVYVVTKENMD--NLQWVLDP 315 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 50/327 (15%), Positives = 108/327 (33%), Gaps = 15/327 (4%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ + + + + T K + + K+ + ++ + + Sbjct: 2 MKKKMLAVAVCVSMCMMAFAGCTSESGGGSDKKAEQTEGKKEESGKVFMTVSNQQNEFMV 61 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD--- 117 + +E G ++++++A Q +QI+ AEAIL+ + Sbjct: 62 GMAENFKEVGEAAGYEVQLMDAD--LDATKQVSQIETAISENAEAILVEPCSVDGLTTGL 119 Query: 118 LQKQVASLPVIEL-VNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 + A +PV + N V S + V Q G +++ G+ + +M G Sbjct: 120 KEAHDAGIPVFVIHNNVSATDLVTSLIHVDVRQGGELKMEQVIKDC-GEDAKIAIMTGTL 178 Query: 177 NAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 + ++ G+ A + P V +V G+ L + L EID + Sbjct: 179 GQDTTNQICGGYDAVLEKYPNVEVVFEGAGNWGATDAAPLAENWLASGKEIDAIVCN--N 236 Query: 236 AEAAMGEG-----RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 A+G + V +++ + + G + + E A E Sbjct: 237 DGMALGVVSVLKSAGKSEQIKVYGLDATNEGLKAVDSGEMAATIYVDSKAEIEKAFEMLE 296 Query: 291 RQLQGQSVSDNVSPPILVLTPKNADRE 317 G+ V P +++T +N Sbjct: 297 DLKAGKKVDAEYKVPSVLVTKENVKEY 323 >UniRef50_A6FN89 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Rhodobacteraceae RepID=A6FN89_9RHOB Length = 359 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 124/349 (35%), Positives = 179/349 (51%), Gaps = 14/349 (4%) Query: 1 MRVLLFLLLSLFMLPAFSAD-----NLLRWHDAQHFTVQASTPL-KAKRAWKLCALYPSL 54 MR L L + L A S+ + + TPL A++ W LC YP L Sbjct: 12 MRWFCVLFLVVAPLAAASSPWQLQVPQAPFDYEGPSDIVTYTPLDTAQQDWSLCVAYPHL 71 Query: 55 KDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS--T 112 KD+YWLS+N+GM E ARR GV K++EAGGY L Q+ QI C G +A++LG+ Sbjct: 72 KDAYWLSVNHGMVEEARRLGVSFKLVEAGGYPNLDRQRQQIIDCVAEGVDALILGTVAYD 131 Query: 113 TSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKP---LNV 169 + + +PVI VN I P + ++VGV W +MG GR + Q H K + V Sbjct: 132 ALTDTILQIARDIPVIAAVNDIADPGITAKVGVSWVEMGAAAGRVIAQR-HPKGSPAVKV 190 Query: 170 LLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVV 229 PGP AG + + GF AAIA S I GD + Q L+++ LE P++D V Sbjct: 191 AWFPGPKGAGWVQFVERGFHAAIAASSAEIAVTKYGDTGRKDQVLLVEQALEEVPDLDYV 250 Query: 230 AGTAIAAEAAMGEG--RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVE 287 G+A AEAA+ R L+ + +VS Y++H VYRG+ R +++ A +D V QG LAVE Sbjct: 251 VGSAPTAEAAVSLLRTRGLEGRVQIVSDYMTHAVYRGIYRQKILAAPTDFPVLQGRLAVE 310 Query: 288 QAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQH 336 A+R ++G + P I + + +L+P F PV+ + Sbjct: 311 FAVRAIEGSLIHRQAGPVIFPVVEGQITEAQLSETLAPASFIPVFEFSP 359 >UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM Length = 355 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 41/301 (13%), Positives = 102/301 (33%), Gaps = 19/301 (6%) Query: 32 TVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQ 91 T ++ ++ K+ + ++ ++ + + A G +L + A + Q Sbjct: 55 TGAKASEDGGEKKLKIGFSESTYSGAWRVAEVEDVTKYAEMNGYELIMTNADS--NIEKQ 112 Query: 92 QAQIDQCKQWGAEAILLGSSTTSF--PDLQK-QVASLPVIELVNA-IDA---PQVKSRVG 144 ++ + I++ + P + + A +PVI++ +D + + Sbjct: 113 IGDVEDLIAQKCDLIVIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGKWKEDFITTIR 172 Query: 145 VPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIAL 204 +Q G + V K VL + G ++ GF +A V Sbjct: 173 SDQYQQGQGCAEWTVGHVGDKDTTVLEITGNPGQSDAQNRSRGFNEYVADHSNIKVIQQN 232 Query: 205 GDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-------TPLTVVSFYL 257 G+ + ++Q + + + DV+ + E A+G LK + +V+ Sbjct: 233 GEWSRATAQEVVQNVAQSGQKFDVIYC--HSDEMALGALLGLKQAGLKPNEDVWIVAVDG 290 Query: 258 SHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 + +K + + G++ + + G + + +T +N D Sbjct: 291 QKEALDAIKADEIGAIITCTPKG-GDVLFDCINKYFAGDELEEEYFVHQSTITTENVDEL 349 Query: 318 H 318 + Sbjct: 350 Y 350 >UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A9AWB1_HERA2 Length = 333 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 109/332 (32%), Gaps = 20/332 (6%) Query: 4 LLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLN 63 L ++L + +A K + + + + Sbjct: 6 LCRCAIALAIAWTLAACGGSSSGVGAVAPSSLDLKTKTYPELVVGFAQIGAESEWRTANT 65 Query: 64 YGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDL---QK 120 +Q+ A + GV+L + +A Q I G + I + + D + Sbjct: 66 RSIQDTANQLGVELALSDAQQQQ--ENQIKAIRSFIAQGVDVIGVSPVVETGWDEVFAEV 123 Query: 121 QVASLPVIELVN--AIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 + A +P+I L + R+G + + G + + + G+ ++++ G + Sbjct: 124 KQAGIPLILLDRNANVPDDLYSVRIGSDFVEEGRRACGEMARLLDGQGA-IVVLEGTQGS 182 Query: 179 GGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPE-IDVVAGTAIAA 236 GF+ + P + I+D GD + + +L++H ID V A Sbjct: 183 APMIGRGTGFQECLQSYPALHIIDSQSGDFIRARGKEEMAALLQKHGNSIDGVF--AQND 240 Query: 237 EAAMGEGRNLKT-------PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 + A+G ++ + +VS + + G++ G L A Sbjct: 241 DMALGAIEAIEEYGLRPGVDIKIVSIDAVRAAFEAMIDGKLNATIECNP-LLGPLFFATA 299 Query: 290 IRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 + G V + P + A +E +R Sbjct: 300 LNLANGIPVEKWIKPDEGIYRQDTAAQELSKR 331 >UniRef50_B5ZRZ8 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Rhizobium RepID=B5ZRZ8_RHILW Length = 305 Score = 204 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 108/303 (35%), Gaps = 10/303 (3%) Query: 24 RWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY-GVDLKVLEA 82 A A P A+ KL + ++ ++ ++ A+R GV++ + Sbjct: 5 SLLGALALLAVAVVPSLAQEPIKLGFITK-FPVPFFATMENAAKDYAKRNPGVEIIYGQG 63 Query: 83 GGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDLQKQVASLPVIELVNAIDAPQ-V 139 + + Q AQI+ G + I L + + + + V+ + N I + Sbjct: 64 TSATDIEGQIAQIESMVTRGVQGIALTPVDPTVSTALDKAVASGVKVVLMDNNIPDWKGR 123 Query: 140 KSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRI 199 + F G G YL + ++ G + V+G + G V+I Sbjct: 124 TALATTNNFAAGKIAGEYLKTVLKA-GDTLGILEGVPGVPALDDRVKGMLEGLQGLDVKI 182 Query: 200 VDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAA----MGEGRNLKTPLTVVSF 255 V + E+ ++ +++L ++P++ + A + + +V F Sbjct: 183 VGKGATNCTEELGISVAEDLLTKNPDLKAIYAACGPPAAGAARAIKNSGTANDKIVLVGF 242 Query: 256 YLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 LK G + + EL V+ ++ ++G+ V + ++TP+N Sbjct: 243 DFCCGEEEALKSGVEDASVAQFPTKMAELGVDALVKSIRGEKVESLIDSGAALVTPENMA 302 Query: 316 REH 318 + Sbjct: 303 QFK 305 >UniRef50_Q89VC4 ABC transporter sugar-binding protein n=3 Tax=Bradyrhizobium RepID=Q89VC4_BRAJA Length = 314 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 96/287 (33%), Gaps = 17/287 (5%) Query: 45 WKLCALYPSLKDSYWLSLNYGMQEAARRYG-VDLKVLEAGGYSQLATQQAQIDQCKQWGA 103 ++ + ++ + ++ G + A+ G ++ + ATQ I Sbjct: 27 YRFVIVPKAMNNPFFDFARDGCLKRAKELGNIECVYKGP-VEHEPATQAQIIQDFVTQKV 85 Query: 104 EAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQ 160 + + + + + A +PVI + + +G + G G+ LV+ Sbjct: 86 DGLAISVADVAAMTKSIEAATAAGIPVITFDADAPGSKRIAYIGTNNKEFGVALGKQLVK 145 Query: 161 WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIAL--GDNDIEIQRNLLQE 218 ++ G A E V+G R A+ GS V + ++D + + + Sbjct: 146 -MRPDGGKYAMVSGGPGAKNLAERVDGVREALKGSKWTEVAGSPTFCNDDPALAVQQMTD 204 Query: 219 MLERHPEIDVVAGTAIAAEAAMG-----EGRNLKT----PLTVVSFYLSHQVYRGLKRGR 269 M P++ + A RN K T+V L+ G Sbjct: 205 MRTATPDLAAIVPIGGWPMFAPEGFKAFASRNKKDIDSGKFTLVVADTLKMQLELLRDGY 264 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 + GE A++ + +G+ V + V + ++T N + Sbjct: 265 ANALVGQRPFEMGEKAMDTLLAIKKGEKVPEIVYTGLDLVTKDNVAQ 311 >UniRef50_C0BEZ3 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BEZ3_9FIRM Length = 339 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 116/331 (35%), Gaps = 22/331 (6%) Query: 4 LLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLN 63 ++ L + F+L K+ L S+ S+W S Sbjct: 16 VILLAILFFVLTGDGLGEGKEGSTNSVI-----------EKKKVVFLTKSMDSSFWQSAY 64 Query: 64 YGMQEAARRYGVDLKVLEAGGYS--QLATQQAQIDQCKQWGAEAILLGSSTTSFPDL--- 118 G A+ Y +DL G Q ID+ + +A+L + Sbjct: 65 AGAGAASAEYNLDLVCEGPDGDGEEDYEAQNEMIDRAIREQVDALLFSAIDFEKNAEAID 124 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 + A + ++ + + +++ V+ +G ++ G G ++ + LN+ ++ + Sbjct: 125 RAAKAGIRIVVVDSPVNSEAVECYIGTDNYEAGCMAGEEVLGN-PAENLNIGIVNFDKST 183 Query: 179 GGSKEMVEGFRA-AIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 + +GFR + V I + I R + ML +P+I+V+ Sbjct: 184 ENGQLREKGFRDTVLKDDRVNITASINVKSTITDAREGTERMLLDNPQINVIVTFNEWTT 243 Query: 238 AAMG---EGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQ 294 +G E VV+F + + L++G V G L +EQ L Sbjct: 244 LGVGDAVEALGAGERTQVVAFDSNVKSIGMLEKGNVDALIVQNPYAMGYLGIEQINTLLN 303 Query: 295 GQSVS-DNVSPPILVLTPKNADREHIRRSLS 324 GQ + +++T +N + +++L Sbjct: 304 GQKPEKKETATSSILVTRENMYDDKSQKALF 334 >UniRef50_B0NFD0 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NFD0_EUBSP Length = 367 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 66/363 (18%), Positives = 136/363 (37%), Gaps = 51/363 (14%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRA----------------- 44 R L+ LLL + M+ +A D++ + + S + K+ Sbjct: 3 RKLVSLLLCVAMVATLAAGCGSGSGDSKDSSKEDSKKTEEKKDEGTKEVSTDTVFGKALA 62 Query: 45 ---------------WKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLA 89 KL A+ +L +S+W+++ G ++ A YGV + V + Sbjct: 63 QVNEDLAPLPEKDTGKKLAAIESTLTNSFWVTMQEGYEDTAEEYGVSIDVQATDSDTDTT 122 Query: 90 TQQAQIDQCKQWGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAID-------APQV 139 Q ++ EAI + T + + +I N ++ ++ Sbjct: 123 GQLDILNNMLVKDYEAIAVSPLTEDCLISGIVAANQNDVKIITTGNEVNEDSLKEAGGKI 182 Query: 140 KSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRI 199 +++ V ++ G +Y++ GK V ++ G + A S +G + + + + Sbjct: 183 DAKITVDFYNQGVLGAQYIIDKTDGKG-KVAVIAGNEGATQSDARRDGAKETFEDAGMEV 241 Query: 200 VDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL-----KTPLTVVS 254 V + D D + + ++E +P+I +A + A+G R L K + VV Sbjct: 242 VAVEQCDFDAQKAYDAAAAIIESNPDIVGIAC--GNDDMALGVVRALEEKDVKDQVAVVG 299 Query: 255 FYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVS-PPILVLTPKN 313 + + ++ G + G+ AV ++ L+GQ VS P+ V+ N Sbjct: 300 VDFTEEAKAAIEEGTYDATVAMSPYLMGKEAVIIMLKALEGQDVSKVGDSTPMAVVDSTN 359 Query: 314 ADR 316 D+ Sbjct: 360 VDQ 362 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 203 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 56/280 (20%), Positives = 106/280 (37%), Gaps = 15/280 (5%) Query: 48 CALYPSLKDSYWLSLNYGMQEAARRYGVDLK-VLEAGGYSQLATQQAQIDQCKQWGAEAI 106 + + + +L+ +Q+ A G G + +ATQ +QI+Q G + I Sbjct: 2 ALFMSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDGI 61 Query: 107 LLGSSTTSFPDLQKQVA---SLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 ++ +T + A + V+ L I D + VG G + +++ Sbjct: 62 IIEPVSTDGIVKAVKDAEKVGVKVVILNQRISDQNAADTFVGADNESTGAALMKKVMEDL 121 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLE 221 GK N++ + GP + G +GF + +A P V+++ D D L + L Sbjct: 122 DGKG-NIVELLGPMGSDGQVGRSKGFDSVLAEYPDVKVIASDSADWDTAKALTLTENWLT 180 Query: 222 RHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASD 276 +I V A A+G + +K + V + + G + S Sbjct: 181 S-SDIQAVV--AQNDGMAVGAAQAIKEAGLTDKIKVYGVDATSDGLNAIVNGGMTGTVSQ 237 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 QG+++ + + GQSV V +V T +N + Sbjct: 238 GTENQGKISADLCSNLIYGQSVPKEVIATNVVYTKENVNE 277 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 203 bits (518), Expect = 7e-51, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 123/327 (37%), Gaps = 23/327 (7%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWK---LCALYPSLKDSYW 59 + L +L S + S + DAQ A + +A + + S+ Sbjct: 1 MFLAILGSASVAAGCSREESEAARDAQKPASSAEAAGRKPKALTEIVVGFSQTGAESSWR 60 Query: 60 LSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP--- 116 ++ + +Q A + V L A G + Q ++ G + I++ + Sbjct: 61 IAHSKSIQAEAEKRHVQLLF--ADGQNVHNNQVNAVNGFITKGVDVIVIAPQESVGWKPT 118 Query: 117 DLQKQVASLPVIELVNAIDAPQ--VKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 + + A +PV+ +DA + ++ + + G + G +L + +GK ++ + G Sbjct: 119 LKEAKRAGIPVVLTSRGVDAEEDLYETVMVADFVWEGRRAGEWLAKQTNGK-ARIIELVG 177 Query: 175 PDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHP-EIDVVAGT 232 A + GF AIA P ++I+ GD + +++ +L H EI+ V Sbjct: 178 TPAADVAVMRKTGFAEAIAKHPDMKIIASQSGDFTRTKGKTVMETLLSAHKGEINAVY-- 235 Query: 233 AIAAEAAMGEGRNLK-------TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELA 285 A + A+G + ++ + V+S + + G++ + G L Sbjct: 236 AHNDDMALGAIQAIQAAGLKPGQDILVISIDAVKPAFEAMMEGKLNATVECNPMH-GPLL 294 Query: 286 VEQAIRQLQGQSVSDNVSPPILVLTPK 312 + + ++G+ V P + + Sbjct: 295 FDTIDKIVRGEKVPKRTIVPGQIFERE 321 >UniRef50_C6BZX1 Putative D-ribose-binding periplasmic protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZX1_DESAD Length = 312 Score = 203 bits (518), Expect = 7e-51, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 100/287 (34%), Gaps = 8/287 (2%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQ 97 P + + + + ++W + G A + L ++ + Q+ ++ Sbjct: 5 PCASYAQKTIVTIPKATIFNFWRIVCMGAHAAVEDSDITLIWRGPRVENKPSAQRHLLEY 64 Query: 98 CKQWGAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQP 154 +AI+L + A + ++ + + + + + ++ G Sbjct: 65 YIDQKVDAIVLAPMDRKTLNPYIEKASKAGIKIVIIDSPVTTDSIDGFIATDNYKAGAMG 124 Query: 155 GRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG--SPVRIVDIALGDNDIEIQ 212 + G VL++ + G +GF + I+ I + D Sbjct: 125 AELMASKLKGTGP-VLVVGHSPDNGSCALREKGFIDKMQALSPGRTIITIHMLDGSERET 183 Query: 213 RNLLQEMLERHPEIDVVAGT--AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRV 270 R +E+L P I V T A + +T + ++F + ++ G++ ++ Sbjct: 184 RLSTKEILTNTPSIAGVFTTNEATSDGVLHVMQDRNETHIPFIAFDYNQKLLEGVRNKQI 243 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 + + G V AI L G+ +S ++ P+ ++T N D Sbjct: 244 EALITQRPYALGFFGVRSAIELLNGKKISKHMESPVTIITNDNIDEA 290 >UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB16_CLOBU Length = 324 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 119/325 (36%), Gaps = 22/325 (6%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 +V + ++LSL + + + + + K+ A Y ++ +SY+ Sbjct: 7 KVFVAIILSLVFCTSIIGICIYISSNGVYSEN------GVESKRKIGATYMTMNNSYFKI 60 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDL 118 +N ++ G L + Q +I +AI + + Sbjct: 61 INEEIRYVVEENGDTLITRDPALSLD--KQIEEIYDFIDLKVDAIFINPVDWVGIRNALI 118 Query: 119 QKQVASLPVIELVNAIDAPQVKS-RVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 Q A + +I + I + + V ++ G L+ N++L+ + Sbjct: 119 DAQKAGIIIIAIDTDIYDDDLTACTVVSDNYKAGVLCAEDLMNK--RNSANIILLEH-KS 175 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 A + + + GF AI + ++V + D +E +++ +L + ++D + A+ Sbjct: 176 AKSAIDRINGFEDAIRNNKNFKVVARSDCDGQLETAMPVVENILLKQKDVDTIM--ALND 233 Query: 237 EAAMGEGRNLKTP----LTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 +A+G L+ + V S + +K ++ S G ++ E Sbjct: 234 PSALGGIMALEEKNIKGINVYGIDGSPDGKKMVKEDKMSATVSQSPRKIGRISGESLYNI 293 Query: 293 LQGQSVSDNVSPPILVLTPKNADRE 317 QG+ V + P+ ++T +N D Sbjct: 294 FQGKEVDKKIVVPVELITKENIDEF 318 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 98/281 (34%), Gaps = 17/281 (6%) Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 + + PS + ++ + G A+ G D V A + Q I+ A+A+ Sbjct: 30 IAIITPSHDNPFFKAGAEGADAKAKELGYDTLV--ASHDGDVNKQNQLIETAIARQAKAV 87 Query: 107 LLGSSTTSFPD---LQKQVASLPVIELVNAIDAPQV-KSRVGVPWFQMGYQPGRYLVQWA 162 +L ++ + + A +P I+ + +++ FQ G + Sbjct: 88 ILDNADADASIGSLERLKKAGIPAFLYDREINKTGIAVTQIVSNNFQGAQLAGEKFAELM 147 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLE 221 G + + GP++ ++ EGF + P ++V + + ++ +L+ Sbjct: 148 -GDGGEYVELLGPESDTNAQVRSEGFHDILDNFPEFKMVARQSANWSQTEAFSRMESILQ 206 Query: 222 RHPEIDVVAGTAIAAEAAMGE----GRNLKTPLTVVSFYLSHQVYRGLKRG-RVIMAASD 276 +P I V A+G + + +V F V + +G + Sbjct: 207 ANPNIKGVI--TGNDSMALGAEAALQAAGRKDVFIVGFDGLDYVRDSIIKGSNIKATIMQ 264 Query: 277 QMVWQGELAVEQAIRQLQGQS--VSDNVSPPILVLTPKNAD 315 Q + EQA ++ S + + +++ NA Sbjct: 265 PAYAQAQRVAEQADLYIRTGSTGLPEKQLMDCVLIDSSNAK 305 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 117/331 (35%), Gaps = 19/331 (5%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M +F L A + + + T Q++ + K+ A Y + ++++ Sbjct: 1 MEKPKSFAYIIFCLTICLAF-AIGSNYLINTTTQSNMIYNSTEPRKIGATYMTYNNTFYS 59 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK 120 +N + + +G L L++ L Q+ QI + +AI++ + Sbjct: 60 VINEEISRILKEHGDQLIALDSAM--SLKKQKEQIHYLIEQQVDAIVIAPVDYEGLEDSL 117 Query: 121 QVA---SLPVIELVNAIDAPQVKSR-VGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 + A +PVI + + + + + + G Q + +++ N++L+ Sbjct: 118 KEAYRNRIPVIVVDTEVKHNKNITYSIVSDNYDAGVQCAKDMMRKLDH--ANIVLLQHS- 174 Query: 177 NAGGSKEMVEGFRAAIA-GSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 ++GF I ++V D +E+ ++ +E E DVV + Sbjct: 175 TTRSGYLRIKGFEDTIQSNENYKVVKRMECDGQLEVAMPKMESFIEEGIEFDVVMC--LN 232 Query: 236 AEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 +AMG L V + + + G++ + G+ A E Sbjct: 233 DPSAMGAMAALSSNNILKDKYVYGIDGTPEAKEMVVEGKMAATVAQSPKTFGKKAGEVIY 292 Query: 291 RQLQGQSVS-DNVSPPILVLTPKNADREHIR 320 + +++ N P+ ++T +N Sbjct: 293 KLFSQETIKNKNEMSPVQIITKENVQDYSTE 323 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 105/292 (35%), Gaps = 13/292 (4%) Query: 40 KAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCK 99 K ++ + +L + YW SL G + GV L A Q + + Sbjct: 51 KPTEGTQIGGVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMI 110 Query: 100 QWGAEAILLGSSTTSF--PDLQ-KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGR 156 G + +L+ T + P ++ + V+ + +A+ P VG G + + Sbjct: 111 LQGYQGLLVSPQTDNNLQPAMETAASRGIAVVNVNDAV-IPSATQYVGNVQRDNGVRVAQ 169 Query: 157 YLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNL 215 + + G V + G + + +GF I + ++V + E + Sbjct: 170 WFIDNRPG-GGKVAAIEGQPGVFAAGQRTDGFTTTITEAGNFQVVASVPANWSREQAYDA 228 Query: 216 LQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRV 270 +L++HP++ A+G +K ++V Y ++ G + Sbjct: 229 ASTILQQHPDLIGFYAN--NDGMALGVVEAVKAANLQEQVSVFGTDGIPDAYASIRAGDL 286 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRS 322 V GE+A+E +R L GQ + V+ P ++T N + S Sbjct: 287 TGTVDSFPVLTGEVAMEVVLRLLAGQGIPRVVATPQALITADNVADYSVEDS 338 >UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJR9_9BACT Length = 326 Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats. Identities = 60/332 (18%), Positives = 113/332 (34%), Gaps = 32/332 (9%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ LL L+ L L FS+ + + ++ PL+ + L +L + +++ Sbjct: 1 MKKLLNALMLLACLGLFSSCG-------ESDSASSNEPLQKNKKL-LGITVMTLANPFFV 52 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 L + A ++G ++ +L Q Q+ +AI++ T P Sbjct: 53 ELAEAAKAEAEKHGYEVIILSGD---DAEKQAKQMKDFISQKVDAIIVAPKNTLAIGEPI 109 Query: 118 LQKQVASLPVIELVNAI--DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 A +PV +V V F G + ++ VL++ Sbjct: 110 KAANAAEIPVFTADTGCTDPGAKVVCNVMTDNFGGGKLAAQAMIDVL-PNGGKVLILDF- 167 Query: 176 DNAGGSKEMVEGFRAAIAGS-------PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDV 228 A V+GF+ IA + IV G E + ++ L P++ Sbjct: 168 KKAQSCLLRVDGFKEVIAEHNEAHPDKKIVIVAELDGAAAEEPSKKATEDQLNATPDLKG 227 Query: 229 VAGTAIAAEAAMGEGRNLKT-----PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGE 283 V AI +A+G LK + ++ F + RG + G+ Sbjct: 228 VF--AINDLSALGAVVALKKANKLQDVKIIGFDGLRIGKEAILRGEIHADPIQFPSEIGK 285 Query: 284 LAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 L V+Q + G V + + ++A Sbjct: 286 LTVQQILAYKNGDEVKPEILIATKLYYQEDAK 317 >UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT Length = 522 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 55/326 (16%), Positives = 106/326 (32%), Gaps = 42/326 (12%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 ++ F+L + L S + + + + S +D + Sbjct: 3 KISSFILTFMGCLMICSC------------------NSRNSKQYVIGVSQCS-EDIWRDK 43 Query: 62 LNYGMQEAA-RRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 LN +Q A GV ++ A Q QI+Q + G + +++ + Sbjct: 44 LNQELQTATYMEDGVTMRF--ASADDNDKRQIQQIEQFIKDGVDLLIISPNQAHAITPVV 101 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + +PVI D + + +G ++G Q G Y+ + NV+ + G Sbjct: 102 DKAVEKGIPVILFDRKADG-KYTAFIGADNVEVGRQMGDYVARQLDYHG-NVIELMGLKG 159 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHP-----EIDVVAG 231 + + E GF I+ P +++V+ GD R +Q +RH I V Sbjct: 160 SSPAIERHRGFIERISRYPGIKLVESLQGDWTKASGRRAIQAFSQRHGTASCATIACVF- 218 Query: 232 TAIAAEAAMGEGRN--LKTPLTVVSFYLSH---QVYRGLKRGRVIMAASDQMVWQGELAV 286 A AMG L + + + + G+L + Sbjct: 219 -AQNDRMAMGAREAGLLPKSTLFCGVDALPGEQGGMKLVADSVLSASYIYPTR--GDLVM 275 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPK 312 + A+ L + ++TP Sbjct: 276 KLAMNILNHRPYQKENLLQSALVTPD 301 >UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN50_9CLOT Length = 333 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 133/335 (39%), Gaps = 28/335 (8%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 ++++FL L++ L FS + +V+ + + +L + + +S Sbjct: 8 KIVIFLSLAIVFLILFSLIIIENIRMKNSDSVE----------YVIGMSQANLYEPWRIS 57 Query: 62 LNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDL 118 +N + A++Y + + +AGG Q+ ID+ G + +++ + + P + Sbjct: 58 MNEEISNEAKKYKNIKIVYKDAGG--DTNKQKKDIDELLNSGIDLLIVSINDSEKLTPVV 115 Query: 119 QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 K S+PV+ L A++ +G ++G + G+ +V V+ + G N+ Sbjct: 116 SKAYKSVPVVVLDRAVEGYNYSVYIGPDNEKIGREAGKMVVDLLGNSEGRVIEIQGLLNS 175 Query: 179 GGSKEMVEGFRAAIAG-SPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 + +GFR AI ++IV +G+ + + ++E+L+ ID++ A Sbjct: 176 HPDIDRSKGFREAIKQCDNIKIVRTVIGEWQKDEAEDKIEELLKEDRNIDIIF--AHNDY 233 Query: 238 AAMGEGRNLKT----PLTVVSFYLS---HQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 A+G + + ++ + + RG + + G+ AV+ A+ Sbjct: 234 MALGAYKAAYKLGINNIKIIGVDGLTGENGGLDLVSRGILQGTFTCSTG--GKEAVDSAL 291 Query: 291 R-QLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 + + + + +T N + + Sbjct: 292 NILNKKKKIPKKIVLKSDKITKSNVNEYLNDKFKY 326 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 52/305 (17%), Positives = 105/305 (34%), Gaps = 20/305 (6%) Query: 27 DAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYS 86 + A++ +A + + + + L+D + M++ A GV L + ++ Sbjct: 22 TGCAGSSNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNITDSKK-- 79 Query: 87 QLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQ---VASLPVIELVNAIDAP---QVK 140 + ++ Q++ +A+++ + A++P+ L K Sbjct: 80 DVGSELNQVEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEFAEGSDVGYK 139 Query: 141 SRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIV 200 S +GV G YL + N++ G A + GF I +IV Sbjct: 140 SYIGVDDTVAGQMQAEYLNKLM-PNGGNLVFAAGVYGASWTDRRKNGFDKTI-NENFKIV 197 Query: 201 DIALGDNDIEIQRNLLQEMLERHP--EIDVVAGTAIAAEAAMGEGRNLKTPLT------V 252 + + +++ L+R P +ID V E A+G + V Sbjct: 198 AEFQAKGSRDDAKRNMEDTLQRFPSGQIDAVVAN--NDEMAIGAASAIADAGRTAEFKAV 255 Query: 253 VSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPK 312 V + + ++ G + QG AVE L G +V + + P ++T Sbjct: 256 VGVDGTEPALQDIEGGTMSATVRQDSAGQGVKAVEVVTDFLNGGNVDNRYTLPFTLITKD 315 Query: 313 NADRE 317 N Sbjct: 316 NLSEF 320 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 117/341 (34%), Gaps = 29/341 (8%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQAST-----PLKAKRAWKLCALYPSLK 55 M+ L LL F L + + + + +++ + + + + Sbjct: 1 MKKKLIALLMCFSLVIAAGCGASDTNSSDSESSESAQSTSANDSGSNKLITIGFSQVGAE 60 Query: 56 DSYWLSLNYGMQEAA-RRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS 114 + ++ M+ A + G L A + Q + + I + T + Sbjct: 61 SDWRVANTASMKSALSEKNGFKLIF--ADAQQKQENQIKAVRDFISQDVDVIAIAPVTET 118 Query: 115 FPDL---QKQVASLPVIELVNAI---DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPL- 167 + + + A +PVI + I D VG + + G +LV + K Sbjct: 119 GWETVLGEAKDADIPVIIVDRMIKVSDDSLFSCWVGSDFQKEGVNAAEWLVNYMKEKGKT 178 Query: 168 ---NVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERH 223 NV+++ G + +GF I I+ G+ + +++ L+++ Sbjct: 179 DKQNVVVLQGTIGSSAEIGRTKGFGDTIKKYDNFNILAQQTGEFTQAKGQEVMESFLKQY 238 Query: 224 PEIDVVAGTAIAAEAAMGEGRNLK-------TPLTVVSFYLSHQVYRGLKRGRVIMAASD 276 +IDVV A A G LK +T+VSF ++ + G + ++ Sbjct: 239 NDIDVVI--AQNDNMAFGAIDALKAAGKAPGKDVTIVSFDAVKAAFKSMIAGDMNVSVEC 296 Query: 277 QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 + G E A + + + V V + A++E Sbjct: 297 NPLH-GPRVAELAKKLMNDEKVEKIQYVDEKVYPAEIAEKE 336 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 61/295 (20%), Positives = 112/295 (37%), Gaps = 13/295 (4%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQC 98 AK + SL + Y+++L+ + A+ D+KV+ L Q QID Sbjct: 41 AGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKVITVDSNYDLNKQFNQIDNF 100 Query: 99 KQWGAEAILLGSST--TSFPDLQ-KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPG 155 G + ILL ++ P ++ Q A + + + + A + V Q G Sbjct: 101 IASGVDLILLAAADPKAIAPAIKRAQNAGI--VVMATDVAAVGADATVQTNNVQAGEIAC 158 Query: 156 RYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIV-DIALGDNDIEIQR 213 +Y+V +++ GP + V G R ++A +P + I+ D G + Sbjct: 159 QYIVDKLGAAGGQIIIQNGPQ-ISSIIDRVSGCRKSLANNPKITILSDDQNGKCSRDEGM 217 Query: 214 NLLQEMLERHPEIDVVA--GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRG--R 269 ++Q L RH +ID V A + + + + + S + + + K G R Sbjct: 218 KIMQGHLTRHRKIDAVFTVCDPQATGSDLAAQQFGRNEFFIASVDGAPDIEKAFKGGNTR 277 Query: 270 VIMAASDQMVWQGELAVEQAIRQLQGQSVS-DNVSPPILVLTPKNADREHIRRSL 323 + +AS + AV+ + G+ + P +LT N SL Sbjct: 278 IQASASQDPYGMAQQAVQIGYEIMNGKKPDNPMILMPSTLLTKDNVADYKGWSSL 332 >UniRef50_A7NNR8 Anti-sigma-factor antagonist n=2 Tax=Roseiflexus RepID=A7NNR8_ROSCS Length = 445 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 67/294 (22%), Positives = 117/294 (39%), Gaps = 22/294 (7%) Query: 44 AWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGA 103 A L + + ++W L +G++ A +GV + +A + Q + + Sbjct: 4 AITLGCVLNDARFTFWSILRHGVRARAADHGVTVIDQDART---VEAQVEMVADLLRRRV 60 Query: 104 EAILLGSSTTSFPDLQ----KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLV 159 A++LG + + Q ++A +PVIE+ I V + V Q + L Sbjct: 61 HALILGPARETRAFAQHLELARLARVPVIEVDGGILEGYVSATVRSDERQGLMRIAELLT 120 Query: 160 QWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQE 218 + L + L+ GP N + A+ P +RI+ A+GD E RNL +E Sbjct: 121 ARLGEQ-LCIALIAGPHNH-----RADILADALRQWPRIRIMAQAVGDWTRESGRNLTEE 174 Query: 219 MLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMA 273 L ID + A A+G LK + VV F + R + G ++ Sbjct: 175 WLRAGQPIDAIF--AANDPMALGAVDALKAQNLAGKVVVVGFDGLPEALRAIHSGHMLAT 232 Query: 274 ASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRS-LSPG 326 + + + G AV+ A++ L+G V + P ++T N + L PG Sbjct: 233 VNQEPLRIGRQAVDVALQALRGVPVERQIFTPGELITCDNVTESALSALDLLPG 286 >UniRef50_C4ZP40 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thauera sp. MZ1T RepID=C4ZP40_THASP Length = 357 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 119/328 (36%), Positives = 178/328 (54%), Gaps = 15/328 (4%) Query: 20 DNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKV 79 R + T P R W+LCA+YP LKDSYWL++N+GM E AR G+ L V Sbjct: 31 AGDHRAANGAAETGPDIVPPSPTRGWRLCAIYPHLKDSYWLAVNFGMTEEARALGLGLGV 90 Query: 80 LEAGGYSQLATQQAQIDQCKQWG-AEAILLGSS------TTSFPDLQKQVASLPVIELVN 132 EAGGY QLA Q+ ++ +C + +A+L+G+ P L ++ V+ +VN Sbjct: 91 REAGGYGQLARQRERVAECLEDEAVDALLIGTVSRGGLNDLLAPQLDHRL----VLGVVN 146 Query: 133 AIDAPQVKSRVGVPWFQMGYQPGRYLVQW--AHGKPLNVLLMPGPDNAGGSKEMVEGFRA 190 ID V++R+ VPW+Q+G+ GR+L A G P + +PGP +A + GFR Sbjct: 147 DIDPQVVRARIAVPWYQLGWTIGRWLAARHPAGGPPARIAWIPGPADADWVGFIDRGFRT 206 Query: 191 AIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGR--NLKT 248 IAGS V +V GD IQR L++ +L+ P++D + G A AEAA+ R + Sbjct: 207 GIAGSAVNVVAERHGDTGRAIQRRLVEAVLDEQPQLDYLVGNAPMAEAAIAALRRRGREG 266 Query: 249 PLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILV 308 +VS YL+ V+ G+ RGR++ A +D V QG LAV QA+R L+G+ + + P + + Sbjct: 267 ATAIVSSYLTPAVHGGILRGRILAAVTDFPVLQGRLAVRQALRALEGRPIEPYLGPAVEL 326 Query: 309 LTPKNADREHIRRSLSPGGFRPVYFYQH 336 + + R ++ L P GF PVY Sbjct: 327 VDKSSLGRFPVQWMLPPAGFVPVYQIAP 354 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 57/286 (19%), Positives = 116/286 (40%), Gaps = 17/286 (5%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 + K A Y ++ + Y+++++ ++E+ + G L + Q QI G Sbjct: 26 KQLKFGATYMTMNNPYFVNMDENIEESVQAKGDILITRDP--LQDQKKQNEQIKDMINEG 83 Query: 103 AEAILLGSSTTSF--PDLQK-QVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYL 158 + + L + P L+ + +PV + + + D V S + + G Q + + Sbjct: 84 IDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDTEAVVSTIVSDNYDAGVQCAKDM 143 Query: 159 VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQ 217 ++ N++++ E V+GFR I G P +IV+ + EI +++ Sbjct: 144 MKK--KTSANIIIVN-QKALNSINERVKGFRDTIKGHPQYKIVEEKESAAEFEIAMKVME 200 Query: 218 EMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIM 272 +++ DVV G A+G ++ + V S +K G + Sbjct: 201 KIIYEKKNYDVVMG--GNDPIALGCIAAMQMTDKTDQVMVYGVDGSPDGKAMIKAGFLEG 258 Query: 273 AASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREH 318 A+ + GE AV+ A L G++V +V+ P+ ++T N Sbjct: 259 TAAQSPIKIGEKAVQTAYSYLAGETVKKHVTIPVELITADNLKFYD 304 >UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET05_9FIRM Length = 336 Score = 201 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 54/337 (16%), Positives = 124/337 (36%), Gaps = 23/337 (6%) Query: 3 VLLFLLLSLFMLPAFSADNLLRW--------HDAQHFTVQASTPLKAKRAWKLCALYPSL 54 ++L ++ +L A+ + K + + L S Sbjct: 4 MILCAAMTASILAGCGTGKESNAPGGTAGGTATGTSQDTAAAAQGEGKDGYTIAVLAWSQ 63 Query: 55 KDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTS 114 + + + + G ++ A G ++ V++ + + A ++ Q G +AI + + Sbjct: 64 AEEFGVDIISGAEKKAAELG-NVTVVKPDPAGDMQKEIAILEDLIQQGVDAICVAPVDAN 122 Query: 115 FPD---LQKQVASLPVIELVNAIDAPQV-KSRVGVPWFQMGYQPGRYLVQWAHGKPLNVL 170 + + A + + + ID ++V G YLVQ + VL Sbjct: 123 AIVPYIDKVREAGI--VLVDYDIDTEAQCDAKVLSDNAAGGAMAADYLVQEMGTEG-KVL 179 Query: 171 LMPGPDNAGGSKEMVEGFRAAIAGSPVRI-VDIALGDNDIEIQRNLLQEMLERHPEIDVV 229 ++ ++E + GF+ +A + + L + + R + ML+ HP+I + Sbjct: 180 ILTEVPGVTTAEERIAGFKDRMAEIAPNVEMVEQLSNGTRDTHRATTENMLQAHPDITGI 239 Query: 230 AGT-AIAAEAAMGEGR-NLKTPLTVVSFYLSHQVYRGLKRG----RVIMAASDQMVWQGE 283 + A + N + + + + + + +K +I + + G Sbjct: 240 FCFMGDNSLGAYTACKTNNRQDVLIAGYDATPEQLDIMKNDGPDCNLICSVALYPKKIGY 299 Query: 284 LAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 +A+E A L+G+ ++D V + +LT K+AD Sbjct: 300 VALETAYNILEGEEINDVVWTELGLLTAKDADSFEAE 336 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 54/336 (16%), Positives = 108/336 (32%), Gaps = 35/336 (10%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 ++L+F + AFS +R K + + ++ Sbjct: 3 KLLVFSAYVAIAISAFSLSGCIRE----------------KTKKIVGFSQTENIGPWRIA 46 Query: 62 LNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--PDLQ 119 ++E A ++ L Q + Q A I+ + I L P L+ Sbjct: 47 ETNSIKEEAAKHKKTYDFLITDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALE 106 Query: 120 KQ-VASLPVIELVNAI---DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 A +P+ + S +G + G + G +L + GK +++ + G Sbjct: 107 AARAAKIPIFLIDREAAGRPGEHFVSFLGSDFIAQGRRVGEWLAKATDGK-ASIVELTGT 165 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLER-HPEIDVVAGTA 233 + + + +GFR AIA P ++I+ D +++ +++ +I V A Sbjct: 166 AGSSVAIDRAKGFRNAIATYPNMKIIATQTADFSRAAAVRVMENIIQAKGSDITAVY--A 223 Query: 234 IAAEAAMGEGRNLK-------TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 E A+G + LK + V S + RG + ++ G L Sbjct: 224 HNDEMALGAIQALKSAGMKPGKDVMVGSIDGQKAALEAIIRGELGVSVESNP-RFGPLVF 282 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRS 322 G+ + + + NA Sbjct: 283 ATMEEYFAGKKIPPRIILKDRLFDVTNAKDFVNEAY 318 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 110/335 (32%), Gaps = 35/335 (10%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLS 61 +VL L+ S+ ++ S D L PS + + Sbjct: 3 KVLFLLVASILLIVGCSEDTS------------------GDGETVLGLAMPSATHGWMGA 44 Query: 62 LNYGMQEAARRY--GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP--- 116 L ++ A+ + + Q ++ G +AI++ + Sbjct: 45 LIQNAEDQAKALVEDGTIDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPI 104 Query: 117 DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 LQ + A +P++ + + V + G G Y ++ G V+ + G Sbjct: 105 ALQVEEAGIPLVIVDRELTNDAATVVVKGDNYGAGVNAGEYFMEQLGGNG-KVVEIAG-P 162 Query: 177 NAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 + +++ +GFR AI GS + IV G+ E +++ +L PEID V Sbjct: 163 SNSVTQQRSDGFREAIEGSDIEIVASQSGEFSTETSLQVMENILTSQPEIDAVY--TQDD 220 Query: 237 EAAMGEGRNL----KTPLT-VVSFYLSHQVYRGLK-RGRVIMAASDQMVWQGELAVEQAI 290 A+G + + +T + + S VY + G + + V Sbjct: 221 GMALGVLQAINEANRTDIQFITGVAGSKDVYEIIMDDGLITATFLYSP-LMVKEGVIIGA 279 Query: 291 RQLQGQSVS-DNVSPPILVLTPKNADREHIRRSLS 324 G+ V P +T N D + + Sbjct: 280 DLANGEDPDSAEVVVPATPVTKDNVDDHYDPEAAF 314 >UniRef50_Q5L7F9 Sensor protein n=5 Tax=Bacteroides RepID=Q5L7F9_BACFN Length = 917 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 44/334 (13%), Positives = 105/334 (31%), Gaps = 34/334 (10%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ L+ + S F + + + + + DS+ Sbjct: 1 MKNTNLFRLAFLLFAGLSI-----------FLSSCQPKEEGDKKYVIGFSQCT-SDSWRE 48 Query: 61 SLNYGMQEAARRY-GVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT---SFP 116 ++ MQ A Y V+L V A + Q +QI + + +++ + + Sbjct: 49 AVLLEMQIEASNYRNVELVVYNA--MDNSSRQVSQIRKLISQNVDVLIISPNEAVPITDV 106 Query: 117 DLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 ++ +P I I + + +G + +G G Y+ +L + G + Sbjct: 107 AVEAYRKGIPTIIHDRKIQSDEYTVSIGANNYNIGSAIGEYINGQLPPN-SKILEIWGLE 165 Query: 177 NAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 + + E +GF + V G + + L +ID+V A Sbjct: 166 GSSPAMERHDGFIDHLRSDKNFQVTQVFGKWHYNSAYDAV-NRLATFADIDLVY--AHND 222 Query: 237 EAAMGEGRNL-------KTPLTVVSFY---LSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 A+ + + + + + ++ + G +++ Sbjct: 223 VMALAARDVIMKRDSVSGKRIRFIGIDGVYGDGAGLQAVADEKLEAS-FQYPTG-GAISI 280 Query: 287 EQAIRQLQGQSVSDNVSPPILVLTPKNADREHIR 320 + A++ + G+ V N ++ NA + Sbjct: 281 QVAMQIINGEKVKKNYVLNTAIINRGNAKTILAQ 314 >UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82 Tax=Proteobacteria RepID=A3N967_BURP6 Length = 320 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 52/293 (17%), Positives = 115/293 (39%), Gaps = 23/293 (7%) Query: 39 LKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRY--GVDLKVLEAGGYSQLATQQAQID 96 + K+ + SL + ++L++ G +E + DL + A+Q ++ Sbjct: 30 AETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRIVE 89 Query: 97 QCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKS------RVGVPW 147 Q +AI+L + + + A + V+ + N +D +KS VG Sbjct: 90 QMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGPDN 149 Query: 148 FQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDN 207 + G YL + V ++ G +++ GF+ A+ + ++V + G+ Sbjct: 150 RKGARMVGDYLAKRLKA-GDAVGIVEGVPTTTNAQQRTAGFQDAMKAAGAKVVSVQSGEW 208 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVY 262 +I+ + ML +P + + A+G ++ + VV + + + Sbjct: 209 EIDKGNAVAAAMLNEYPNLKALLC--GNDNMAIGAVSAVRAAGRQGKVYVVGYDNINAIK 266 Query: 263 RGLKRGRVIMAASDQMVWQGELAVEQAIRQL----QGQSVSDNVSPPILVLTP 311 LK GRV+ A Q ++ A++ L + ++ V+ P+ ++T Sbjct: 267 PMLKDGRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPVDLVTK 319 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 98/291 (33%), Gaps = 23/291 (7%) Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 + + D++ L + + ++ V + +A QQ+Q+ G AI Sbjct: 23 IGVSMSAFDDNFLTVLRNALIAHGQSL-PNVNVQMEDAQNDVARQQSQVQNFIASGVSAI 81 Query: 107 LLGSSTTSFPDLQ---KQVASLPVIELVNAIDAPQVK----SRVGVPWFQMGYQPGRYLV 159 ++ T + A +P++ + + + G + + Sbjct: 82 IVNPVDTDATEAISKLAADAKVPLVYVNRQPANVDRLPETQAFIASDEAVSGTLQAQEVC 141 Query: 160 QWAH----GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP---VRIVDIALGDNDIEIQ 212 + GK NV++M G + S++ + IA +++V+ + Sbjct: 142 RLLKARGKGKSANVVVMMGQLSNQASRQRTKDVHDVIATPECAFMKVVEEQTANWQRTEA 201 Query: 213 RNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK------TPLTVVSFYLSHQVYRGLK 266 NL+ L + D V A E A+G + ++ V ++ Sbjct: 202 MNLMSNWLSAGIQFDAVIANA--DEMAIGAIQAMRSAGLPVKDYIVAGIDGGRDGIELMR 259 Query: 267 RGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 +G + + QG A++ A+ +G+ + P ++TP N Sbjct: 260 QGYLDVTVFQDAAGQGAGALDTALMLARGKKTDRTIWVPFQLITPTNVADF 310 >UniRef50_C3M5M3 Periplasmic protein TorT n=33 Tax=Vibrio RepID=C3M5M3_VIBC3 Length = 349 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 136/308 (44%), Positives = 192/308 (62%), Gaps = 14/308 (4%) Query: 43 RAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG 102 A KLCALYP LKDSYWLS+NYGM E AR+ ++L+V+EAGGY QQ QI C +WG Sbjct: 44 GAEKLCALYPHLKDSYWLSVNYGMVEEARKLNLNLRVMEAGGYPNHHKQQQQIALCVRWG 103 Query: 103 AEAILLGSSTTSF--PDLQKQVASLPVIELVNAI-----DAPQVKSRVGVPWFQMGYQPG 155 A+AILLG+ + DL S+PV VN + +K VGV W+ MG+ G Sbjct: 104 ADAILLGTVSPELYQDDLAHYTRSVPVFATVNQLRLNEQQQEHLKGEVGVDWYWMGFYAG 163 Query: 156 RYLVQWAHGKP---LNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQ 212 YL + H K + ++++PGP ++GG+K +++G AI S VRI +I DND E+Q Sbjct: 164 EYLARK-HPKGSGEIKIVVLPGPASSGGTKPVLQGLEEAIRHSDVRITEILWADNDKELQ 222 Query: 213 RNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK--TPLTVVSFYLSHQVYRGLKRGRV 270 RNL+Q+ LE+ P++ + G+A+A EAA+ E R+L + +++ YLSH VYRGL RGRV Sbjct: 223 RNLIQQALEQ-PDVRYLVGSAVAIEAAISELRSLNKSDQIGLIATYLSHGVYRGLLRGRV 281 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRP 330 A +DQMV QG L+V QA L+ + + +P I LTPK+ +++ I SLSP +RP Sbjct: 282 EFAPTDQMVEQGRLSVRQAAAFLRNKPYATQQAPKIEALTPKHLEKKIIADSLSPSEYRP 341 Query: 331 VYFYQHTS 338 V+ + Sbjct: 342 VFQVKAVE 349 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 107/307 (34%), Gaps = 16/307 (5%) Query: 25 WHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGG 84 W + Q P + + + +L + YW SL G A + G++ A Sbjct: 40 WSELDAKFGQMPVPAAGTK---VGGVSKTLTNEYWRSLGEGYANVATKLGIEFVYQAAQS 96 Query: 85 YSQLATQQAQIDQCKQWGAEAILLGSSTTS--FPDLQKQ-VASLPVIELVNAIDAPQVKS 141 Q A + G A+L T + P ++ A +PV+ + +A+ P + Sbjct: 97 EGDQLGQLAIAENLISQGFNALLFSPQTDANLIPAVEAATAAGVPVLNVNDAV-IPSAAN 155 Query: 142 RVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIV 200 VG G + + V ++ G + + GF I AG +V Sbjct: 156 YVGNVQKGNGVNVANWFIAN-RPDGGKVAVIEGQPGVYAAGQRTAGFTETITAGGKFEVV 214 Query: 201 DIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSF 255 + E N +L+++P++ A+G +K + V Sbjct: 215 ASVPANWSREEAFNAASTILQQYPDLIGFYAN--NDGMALGVVEAVKAAGKAEQVAVFGT 272 Query: 256 YLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 Y ++ G + V GE+A+E A+R + GQ + V+ P ++T N + Sbjct: 273 DGISDAYAAVRAGDLTGTVDSFPVLTGEIAMEVALRLMAGQDLPRVVATPQALITKDNVE 332 Query: 316 REHIRRS 322 Sbjct: 333 TYATSDM 339 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 108/282 (38%), Gaps = 16/282 (5%) Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 K+ + D++ + L E A+ G+D++ L+A G S L Q Q+++ A A Sbjct: 70 KVIYANHNDDDAFAMQLKNTFAEKAKSAGLDVEFLDAKGDSNL--QIDQLNEAISNKAAA 127 Query: 106 ILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 I+L + + + + A +PV+ + ++ P+V + + G G ++ Sbjct: 128 IVLLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPKVIGSL-SDDREAGRMQGEFMASHL 186 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAI--AGSPVRIVDIALGDNDIEIQRNLLQEML 220 V+ + G + + + EGF+ A V+++ G + L Sbjct: 187 PPN-AKVVYLMGESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSWSKAEGMKAMTLWL 245 Query: 221 ERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAAS 275 PEI+ V A E A+G + LK V + ++ G + Sbjct: 246 SFFPEINGVV--AANDEMALGAIQALKAANRLNGCLVTGVDATPAGLAAVEAGELSQTVK 303 Query: 276 DQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 Q AV L G++ ++++ P +T +N + Sbjct: 304 QDAEGQAAGAVTLVQGFLSGKAPTESLDIPFTSITRENVAQF 345 >UniRef50_C5RJT9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJT9_CLOCL Length = 330 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 55/332 (16%), Positives = 125/332 (37%), Gaps = 26/332 (7%) Query: 3 VLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSL 62 + + LL+S+ + F Q + ++ + + + D YW ++ Sbjct: 13 IFIALLISIIVF---------------PFYYQKRISTQNEKIKNISLILLNQSDDYWKNV 57 Query: 63 NYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS---TTSFPDLQ 119 G + AA+ + + L ++ + QQ I++ +A+LL S P Sbjct: 58 KLGAETAAKEFDIKLNIVAPEDGGDITIQQNLINEAVAMKVDALLLVPSSFQELVEPVEA 117 Query: 120 KQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAG 179 + V+ + + ++ ++ + G G LV A + ++ Sbjct: 118 AVNKGIIVMTVDSKVNTAKIACCIATDNLSAGKSAGEKLVSLARMNSVAAIVGFDKKTGS 177 Query: 180 GSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEA 238 + +G + ++++D D + +E++ + +I V+ A+ +A Sbjct: 178 NEFDRYKGIKEVTKDYKEIQVIDRWCDIKDSNGAERIAKELISNNEDISVII--ALNYKA 235 Query: 239 AMGEGRN-----LKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL 293 ++G R LK + VV+F +Q + ++ G + G LAV+ A+ +L Sbjct: 236 SIGVARAIEKLGLKGKIKVVAFDGDYQEVKYMEDGTIQSVVIQSPFSMGYLAVKNAVLKL 295 Query: 294 QGQSVSDNVSPPILVLTPKNADREHIRRSLSP 325 QG+S+ + V+ ++ L P Sbjct: 296 QGKSIPRYIESGFTVIDNDAIYLPENQKILFP 327 >UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9X5_9BURK Length = 318 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 56/294 (19%), Positives = 111/294 (37%), Gaps = 12/294 (4%) Query: 33 VQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQ 92 A A + + + W +N G ++A ++ GV L A +L+ Q Sbjct: 15 ATAGLMSAAMAETTIAYITNGNTNEGWTLINGGAKKAGQKAGVKFIELAAE-KGELSKQL 73 Query: 93 AQIDQCKQWGAEAILLGSSTT--SFPDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQ 149 A ++ AI + + P + K A + V+ + I ++ S V + Sbjct: 74 AIVEDMITRKVNAIAIAPVDSAGIAPAINKALAAGIKVVAVDTGISGAKITSYVATDNIK 133 Query: 150 MGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI--AGSPVRIVDIALGDN 207 G + + V+ + G +E +GF + V++V++A Sbjct: 134 AAMVQGDWTAEQIKD-GDTVIYVTGDQGQSTGQERKKGFLDGLNAKRKNVKVVEVATT-W 191 Query: 208 DIEIQRNLLQEMLERHPEIDVVAGT----AIAAEAAMGEGRNLKTPLTVVSFYLSHQVYR 263 D + +N ++ L +P V+A A+ A+AA+ + + F S Sbjct: 192 DQTMAQNGVETALRANPTAKVIACAWDGGALGAKAALMAAGKKAGDVKIAGFDGSPGGLD 251 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADRE 317 +K+G A+ + G++ VE AI +G+ V + ++ P N D+ Sbjct: 252 MMKQGWQSANAAQMLAKIGQVGVETAIAAAEGKKVEARIDTGSFLVLPSNVDQF 305 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 117/330 (35%), Gaps = 25/330 (7%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ L+ +A +L K K+ K+ + + + ++ Sbjct: 1 MKQLVKKSAVFTAAVTLAALSLAACSSGDTQPA-----AKPKKIEKIGLMVQDMSNPFFS 55 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 +++ G +EAA G +A LA Q QID Q G I++ + + Sbjct: 56 AMDKGAKEAAASIGATANTQDAQ--LDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAI 113 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + + A + VI + A + V Q G + +YL + GK NVLL+ G Sbjct: 114 ERAKQAGIIVIAVDT--PAKSADAVVMTDAVQAGEKSCQYLFEQMGGKG-NVLLVDGTP- 169 Query: 178 AGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAA 236 ++ + G + P +++V ND + +ML P++ + G + Sbjct: 170 LQTIRDRITGCNNVVKKFPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQGIFG--MND 227 Query: 237 EAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGR--VIMAASDQMVWQGELAVEQA 289 +A+G ++ + V S + LK+ + A+ AVE A Sbjct: 228 PSALGAVLAVQQAHKAGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRKAVEVA 287 Query: 290 IRQLQGQSV-SDNVSPPILVLTPKNADREH 318 + + + P ++T + Sbjct: 288 QNIIDNKPPAETTILIPSELVTRDTVSQYK 317 >UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Synergistaceae RepID=C1TNC1_9BACT Length = 338 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 104/296 (35%), Gaps = 20/296 (6%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 ++ L +L + YW+++ E A+ G+ ++V+ A L +Q ++ Sbjct: 47 TGQERIGVLVITLSNPYWVTMKERYGEWAKEMGISVEVMAAPTEKDLKSQLNTLEAMVAK 106 Query: 102 GAEAILLGSSTTSFP---DLQKQVASLPVIELVNAIDAPQV-------KSRVGVPWFQMG 151 + I++ ++ +PV+ + + + + G Sbjct: 107 KYDGIIVTPMDPFNLIPGIVKADEKGIPVVCSGPEVSRDGLKQAGAVMDGWITATFKDQG 166 Query: 152 YQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEI 211 + + V ++ G AG SK EG + +++V + G+ D Sbjct: 167 RLCAEDMAEKL-PSGSEVAIIEGIPGAGQSKARREGASEGFEKAGLKLVAVEAGNWDRNR 225 Query: 212 QRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK----TPLTVVSFYLSHQVYRGLKR 267 ++ +++ HP++ + A+ L+ +TV + +K Sbjct: 226 AYDITTNLVKAHPQLKGIYC--ANDVMALAAVDALEVAGIEGVTVYGTDFIPEAAEAIKS 283 Query: 268 GRVIM--AASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 GR+ S +G L V + + + + +S PI ++ +N + + Sbjct: 284 GRLAGSTTFSQAAWTRGTL-VYTLKLIKKDEDLPEKLSVPITLVNGENIGQFQGWK 338 >UniRef50_UPI0001B55A58 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B55A58 Length = 331 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 117/323 (36%), Gaps = 11/323 (3%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ +L + + A ++ + KL + + +++ Sbjct: 1 MKFSTTVLAAGTLASAVMLVTACGTGQIGQSGSGSAANSANSK--KLALVPGVQAEPFYI 58 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 S+ G QE A++ G +L V Q + ++ A+L+ + P Sbjct: 59 SMQCGAQEEAKKLGYELTVQAPQ-KFDATMQTSIVNSLGSNPPAALLVAPTDDQAMLAPI 117 Query: 118 LQKQVASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 Q + ++E+ ++ D S V + G + + + KP +VL++ Sbjct: 118 QQVKNRGAKIVEVDTSLKDKSVAVSSVSSDNAEGGKLAAQTMAKLVGDKPGSVLILDTIA 177 Query: 177 NAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 + +GF + P ++ V I N+ E + + L P++ + T + Sbjct: 178 GTSTTAARAKGFEDELKNHPNLKSVGIQFTQNEPEQAASKVTAALVSTPDLVGIFATNLN 237 Query: 236 --AEAAMGEGRNLK-TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 AA G K + +V F S GLK+G + G V+QA+ Sbjct: 238 TGEGAATGLRNAGKIGKVNLVGFDASPSEVDGLKKGEYQALIAQDPAQIGTKGVDQAVAA 297 Query: 293 LQGQSVSDNVSPPILVLTPKNAD 315 L+G+ +++ + +T + D Sbjct: 298 LEGKPTERDLTAQLHSITKDDLD 320 >UniRef50_C6CRC9 Sugar ABC transporter (Sugar-binding protein) n=9 Tax=Bacillales RepID=C6CRC9_PAESJ Length = 337 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 49/341 (14%), Positives = 110/341 (32%), Gaps = 25/341 (7%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M+ LL + + + + + ++ + + L K + YW Sbjct: 1 MKKLLLVYI-VLIGTLMAYLYMVFVKEDNSGLLDEPEGLHGTLDEKYVMVNFLAGIDYWK 59 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PD 117 + G ++AA GV ++ + + ++Q I + + + Sbjct: 60 NGLKGFEDAAEALGVSVEYRG-STQYDVQEEMMVLEQVIARSPAGIAVSAIDSEALNPAI 118 Query: 118 LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDN 177 + A +PV+ + S +G + G R + + G V ++ N Sbjct: 119 NKAVEAGIPVVMFDADAPRSKAYSYIGTNNYNAGVTAARKMAELTGGTG-KVGVIT-LPN 176 Query: 178 AGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIA 235 +E GF + +++V IA G D I ++++L + ++ + T Sbjct: 177 QLNHQERTRGFEETLEKEFPDLQLVGIADGKGDQMISEQKVRDLLSKFTDLSGIFVTEAN 236 Query: 236 AEAAMGEG---RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQ 292 G N + ++SF +K G + + G ++ Q Sbjct: 237 GGVGAGNAILRLNKLDQVKIISFDTDKGTLDMVKSGTISATLAQGTWNMGYWSLMQLFHL 296 Query: 293 LQGQ-------------SVSDNVSPPILVLTPKNADREHIR 320 + N+ I V+TP + D+ + + Sbjct: 297 RNHIVNPMSDNGDSSIPPLPTNIDTGITVVTPGDVDQFYAK 337 >UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R773_MYCS2 Length = 332 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 98/288 (34%), Gaps = 14/288 (4%) Query: 35 ASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQ 94 + K+ + + + Y++ L Q A + G L + Q Sbjct: 26 TACGGSGSDGVKVGLITKTDSNPYFVHLREAAQAQADKDGAQLIAVAGAFDGDNEGQVTA 85 Query: 95 IDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQ-VKSRVGVPWFQM 150 I+ G + IL+ ++++ + + A + VI L A D V + Sbjct: 86 IENMVGQGVKGILITPNSSTGVLDAIKKARDAGVVVIALDTATDPEDAVDATFATDNKAA 145 Query: 151 GYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIA--GSPVRIVDIALGDND 208 G G+++ P V+++ G +GF + IV + D Sbjct: 146 GVAQGKWVKAALGNTPPQVVMLDGTPGGTVDTFRHDGFLEGFGLTDNSPEIVGQENTNGD 205 Query: 209 IEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK-----TPLTVVSFYLSHQVYR 263 + ++ +L+R P ++ + I AA G + ++ +T+ S S Sbjct: 206 QTKAQTAMENLLQRAPGVNALY--TINEPAAAGAYQAIQAVGRADQVTIGSIDGSCTGVA 263 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQ-GQSVSDNVSPPILVLT 310 +K G++ EL V+ ++ + G S ++T Sbjct: 264 DVKAGKIGATVMQFPAKMAELGVQAVVKFAEDGTKPSGFNDTGSELIT 311 >UniRef50_D2C7R7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga naphthophila RKU-10 RepID=D2C7R7_THENR Length = 350 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 50/323 (15%), Positives = 107/323 (33%), Gaps = 48/323 (14%) Query: 42 KRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQW 101 + SL + YW ++ GM++AA + G+ +A + A Q +I Sbjct: 20 SEDMTILLAPKSLNNPYWFAVENGMKDAAEKLGIKAIF-DAPVEADAAKQAEKILSYIVK 78 Query: 102 GAEAILLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYL 158 G + I + + + +PVI + + +G + GY+ G+ + Sbjct: 79 GVDGIGISPNDPEGIKVVVKRALDKGIPVIMFDSDSPDSGRYAYIGTNNYNAGYEAGKLM 138 Query: 159 VQ-----WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS----PVRIV---DIALGD 206 Q A K + + ++ G A E + GF+ A+ IV D + Sbjct: 139 AQLIEKYKAEKKTIRLAILTGGLAALNLNERIRGFKDALEDYSKRSGKEIVYVADPFPCN 198 Query: 207 NDIEIQRNLLQEMLERHPEIDVVAGTAIAAEA-------AMGEGRNLKTPLTVVSFYLSH 259 +D +L++ ++ ++D + + A A+G + K L +V+F Sbjct: 199 DDAAKAIQILRDASRKYTDLDGWFASNASLVAPPNTIISALGGPQRAK-ELLIVAFDTLE 257 Query: 260 QVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQG------------------------ 295 +K G + + G + + Sbjct: 258 PELELVKAGVIKGLIGQRPYDMGYFSTVLLYFMAKDGVEKTLGNLEKIVAEYGKPDYKIV 317 Query: 296 QSVSDNVSPPILVLTPKNADREH 318 + + + ++T +N D + Sbjct: 318 KEGDYIIDTGVDIVTSENIDEYY 340 >UniRef50_B0MFL8 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MFL8_9FIRM Length = 312 Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 104/277 (37%), Gaps = 9/277 (3%) Query: 37 TPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQID 96 + + + + S YW+S+ GM++AA GV + ++ + TQQ I Sbjct: 34 SDEAENPKYVIGVVTKSRSSEYWMSVCSGMEKAASDLGVKVIIMSPDTETDEKTQQQMIG 93 Query: 97 QCKQWGAEAILLGSS---TTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQ 153 + +A+ + + + + V+ I V +G+ ++G + Sbjct: 94 SLLKKDIDALAVSPINSHNAKGYLKKAEEKGIQVVSYDTKILEKGVP-YIGIDNEKVGRE 152 Query: 154 PGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAI-AGSPVRIVDIALGDNDIEIQ 212 +Y+ K L V ++ G ++GFR I + ++I G +++ + Sbjct: 153 LAQYMAAQMKKKGL-VGIISGNLKQSSHASRLKGFRDYIDKNTDIKIAFTESGYSNLRMP 211 Query: 213 RNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTP-LTVVSFYLSHQVYRGLKRGRVI 271 + ++ HP+++ + T+ A A+G L + + + +K+G++ Sbjct: 212 EKEISRLMREHPDLNGIFATS--AVTALGIMEYLGDRPVLIATVDAQEDALDAVKKGKIG 269 Query: 272 MAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILV 308 A G V + Q +G+ + + Sbjct: 270 ALAYQPGYEIGYETVRYIVNQKEGKKQPEQKIIQADL 306 >UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUV0_PEDHD Length = 343 Score = 199 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 135/342 (39%), Gaps = 24/342 (7%) Query: 2 RVLLFLLLSLFMLPAFS--ADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYW 59 +V L LSLF++ D L V+ T K A K+ PS+ Y+ Sbjct: 7 KVWSTLGLSLFLVVGCLPKEDRLNNKKKEGKEVVKGYTSKKDLSAVKVGYSGPSMVAPYY 66 Query: 60 LSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--PD 117 ++L ++ + +RYG ++ A G +A Q A I+ G + ++L P Sbjct: 67 VALEDVVKRSVQRYG--MQYYTADGQEDVAKQVAAIEDLLSKGIQVLVLNPLDPKAVVPV 124 Query: 118 LQKQVA-SLPVIELVNAIDAPQ-VKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 + + +A + V + + ID S V G G +L + + L + ++ G Sbjct: 125 VNRAIAEGVVVFIVDSMIDEKAAYTSSVVANNTLNGELLGLWLAE-TKNEALKIAIISGN 183 Query: 176 DNAGGSKEMVEGFRAAIA--------GSPVRIVDIALGDNDIEIQRNLLQEMLERHPEID 227 +E GF +A + IV G + ++++L HP ++ Sbjct: 184 QGNPVGREKRLGFVRGLADGQLRQNAKTNFDIVAQGWGGWNNNGGLKAMEDILAAHPYVN 243 Query: 228 VVAGTAIAAEAAMGEGR-----NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQG 282 V+ A A+G + + +T++ F + + LK G+ A + G Sbjct: 244 VLL--AENDAMALGAYKIIKQMGKENQITILGFDGQKEAFDMLKTGKFEATAQNSPKILG 301 Query: 283 ELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLS 324 E +E R L G+ V+ P ++++ KN D + ++L Sbjct: 302 ETIIELVARHLNGEKVNKLNYTPSVLISKKNVDEYYDAKALF 343 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 60/351 (17%), Positives = 120/351 (34%), Gaps = 33/351 (9%) Query: 1 MRVLLFLLLSLFM----LPAFSADNLLRWHDAQHFTVQASTPLKAK------RAWKLCAL 50 M+ + L+L++ + L + + + + ++ + Sbjct: 1 MKKKISLILAIVLAGSLLAGCGSSRTENEGTQEDTAKETENTDSKENTVSEGDSFLIGVA 60 Query: 51 YPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGS 110 P+ K Y+ L GM + V+L V +A TQ QI G + I++ Sbjct: 61 SPNNKVPYFSKLVEGMTDLQEELNVELDVQDAQ--DDTNTQINQIQTFIAEGCDLIIMMP 118 Query: 111 STTSFP---DLQKQVASLPVIELVNAIDAPQVK-------SRVGVPWFQMGYQPGRYLVQ 160 ++ A +P++ + + A K + VG + G + G + Q Sbjct: 119 VQLESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVEGGRKQGELVHQ 178 Query: 161 WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDIEIQRNLLQE 218 + + L+ G A +G ++ + + IV D D + Q Sbjct: 179 LLGDEGS-IALIQGTLGASSQVLRQQGLEEYLSENAPGIEIVAAQNSDQDQSQAITVTQN 237 Query: 219 MLERH--PEIDVVAGTAI-AAEAAMGEGRNLKTP---LTVVSFYLSHQVYRGLKRGRVIM 272 L R EID + +A A+ ++ TV+ + L +V +K + Sbjct: 238 FLTRFAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYDLPSEVLDSIKAKDMYG 297 Query: 273 AASDQMVWQGELAVEQAIRQL-QG-QSVSDNVSPPILVLTPKNADREHIRR 321 + G L ++ A + L +G + + N I V+ +NA Sbjct: 298 STLQAPYDMGALTLQVAYQCLTEGSEEIEANTYTEIPVVYIENAREYDPAW 348 >UniRef50_C9NQR7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NQR7_9VIBR Length = 285 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 98/273 (35%), Gaps = 9/273 (3%) Query: 49 ALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILL 108 + +W S+ G ++A + G+ + S ++ Q+ IDQ + ++L Sbjct: 1 MVPAGSVHDFWKSVKAGSEKAGQELGIKIYFRGPHDESDVSAQRFIIDQVMENACIGLVL 60 Query: 109 GSS--TTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKP 166 + ++ + + A +P + +P V S + +Q G G+ + + K Sbjct: 61 APNTRDRAYDVARLKEAGVPTVYFDRDTGSPDVVSVIATNNYQAGVLAGKEMAKKLGNKG 120 Query: 167 LNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERH-PE 225 V L+ + +GF S + + D I R + +L+ E Sbjct: 121 -RVALLRMKKGVISTDAREKGFVDGATSSGLVVAVDGYLDTKIGEARKNAERILQSQIAE 179 Query: 226 IDVVA----GTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQ 281 +D + T + A+ + + + F + + L+ G + Q Sbjct: 180 LDGIFTPNESTTLGVLMALDTVSAPEGLIHI-GFDSNDSLVNALEDGSIYGLIIQQPFEM 238 Query: 282 GELAVEQAIRQLQGQSVSDNVSPPILVLTPKNA 314 G +V + GQ S N++ + +T +N Sbjct: 239 GYKSVYTVYQAFLGQEYSKNIATETIFVTKENM 271 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 42/332 (12%), Positives = 98/332 (29%), Gaps = 29/332 (8%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M + + + A A ++ P+ D++ + Sbjct: 41 MNKPKKAVQGVLFITGLMALVACGGEKADSNVT------------RIGVAIPNFDDTFLV 88 Query: 61 SLNYGMQE-AARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFP--- 116 ++ M AA++ ++L ++A Q QI + I+L T Sbjct: 89 NMKDSMSAYAAKQDNLELIFVDA--KEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPM 146 Query: 117 DLQKQVASLPVIELVNAIDA-PQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGP 175 A + ++ L P + VG + G + +Y H N+ ++ G Sbjct: 147 TDDILKAGIELVYLNRRPTYLPDGVAYVGSEELRFGEEQAKYAAS--HSDGGNIGIIMGM 204 Query: 176 DNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 + +G P I+ +++ + ++D++ Sbjct: 205 MTVEAAILRTQGVEDFFKEKPEYNIIRKQTALWQRSQGMVVMENWINSGDKLDIIISN-- 262 Query: 235 AAEAAMGEGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 + A+G + L+ V+ + +K G + Q A++ A Sbjct: 263 NDDMALGAIQALRAAGKLDDTIVIGVDATPDGLMAIKNGALDATVFQDGRSQARGAIDAA 322 Query: 290 IRQLQGQSVSDNVSPPILVLTPKNADREHIRR 321 + + P ++T N ++ Sbjct: 323 LSGINKTPRDKITWIPAELVTKDNLAEFEAKQ 354 >UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3A4_9PROT Length = 303 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 110/286 (38%), Gaps = 11/286 (3%) Query: 38 PLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQ 97 P A + ++ + + + Y +++ RY L + + Q + QI+Q Sbjct: 17 PAVAAENKVIAFAQDTMANDFRRAQVYEVRDEVARY-PQLSFVYSDAQGQTSLLIRQIEQ 75 Query: 98 CKQWGAEAILLGSSTTSFPD---LQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQP 154 + + ++LG++ + A +PVI L I+ Q S + ++G Sbjct: 76 FIEQKVDLLVLGTNDEQAVVPVVTKAYQAGIPVIVLDRGINGKQFTSFINSDNIRIGEIG 135 Query: 155 GRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRN 214 Y+ +GK L VLL G A ++ +GF I V G+ + Sbjct: 136 AEYIASRLNGKGL-VLLFEGLQKADVTQLRSKGFLTEIGKHSGIRVIRRTGNYLRKDAVV 194 Query: 215 LLQEMLERHPEIDVVAGTA----IAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRV 270 +++++ +D + + + + + +V + + + ++ G Sbjct: 195 EMEKLVSDGIRVDAIFSESDSMLSGVRMVLSKSNIDPRSVVMVGCDYTSEARQAIRDGTQ 254 Query: 271 IMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADR 316 + G+ AVE A++ G+SV ++ P+ ++T N ++ Sbjct: 255 SGSVLFP--LGGKKAVEIALKIFAGESVPKHIYNPVKLVTKDNVEQ 298 >UniRef50_C5V4K8 Periplasmic binding protein/LacI transcriptional regulator (Fragment) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4K8_9PROT Length = 381 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 89/335 (26%), Positives = 155/335 (46%), Gaps = 15/335 (4%) Query: 16 AFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGV 75 + SAD+ L T + P A R W++ L+P +KD YW+ YG+ A+R GV Sbjct: 49 SGSADDALSTGRVVDSTYVMAEP--ASRPWRIAFLFPHVKDPYWVDCTYGLISEAKRLGV 106 Query: 76 DLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVN 132 + + A GY L Q ++D+ +AI++ + + + + +PV +L N Sbjct: 107 AIDIFPADGYDDLIGQLRKMDEVIAEKYDAIVISPISQTANNPSIAKARSRGIPVFQLAN 166 Query: 133 AIDAPQVKSRVGVPWFQMGYQPGRYL---VQWAHGKPLNVLLMPGPDNAGGSKEMVEGFR 189 + + ++ MG ++ Q K +NV L+PGP +AG V G R Sbjct: 167 DSTSDDLTIKITSSLKGMGVDTMGWVIRDAQRRGLKAINVALLPGPADAGWVMGEVAGAR 226 Query: 190 AAIAGSPVR--IVDIALGDNDIEIQRNLLQEMLERHP-EIDVVAGTAIAAEAAMGEG--R 244 AA SP++ I DI GD+D+ Q L +++L H ++D + G A AA+ Sbjct: 227 AAAKKSPIKVNIADIRYGDSDLVGQSQLAEQLLAAHGSKLDYILGCTACAPAAILPVHDA 286 Query: 245 NLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQG--QSVSDNV 302 LK + +V+F L+ ++ ++RG + A + V Q +A+ + L+G +S + Sbjct: 287 GLKEKIRIVAFGLTREMIGHIRRGEIYAATDVKGVSQARVAINATVNYLEGRIESRPHTM 346 Query: 303 SPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHT 337 + ++ N + + S SP +R V Y T Sbjct: 347 LIKLGMVDRDNYAQYNYDVSTSPPAYRTVLSYDPT 381 >UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2G7_9CLOT Length = 356 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 59/338 (17%), Positives = 121/338 (35%), Gaps = 27/338 (7%) Query: 5 LFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNY 64 + L++ ++ A S+ + + S K + A S+ ++ Sbjct: 25 ILLVIVSMLVCACSSGGGKADTEKTEKKTEDSGN---KDKITVGATLSDFTISFQAAMYN 81 Query: 65 GMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSS-TTSFPDLQKQ-V 122 + +A + Y +++ + G S A Q QI+ G +AIL+ + P L+K Sbjct: 82 ELLDAQKEYD-NIEFILQDGASDSALQVNQIETFITQGVDAILINAVSDAVEPSLKKAME 140 Query: 123 ASLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGK---PLNVLLMPGPDNA 178 A +PV + +I D +G G Q L+ N+L + G A Sbjct: 141 AGIPVFAVNRSITDENAYSYFIGANDTLSGEQMANCLLDMIEKDQMDSCNILYIQGVIGA 200 Query: 179 GGSKEMVEGFRAAIAGSP----VRIVDIALGDNDIEIQRNLLQEMLERHP--EIDVVAGT 232 GF + + V I++ +D E + +Q ML ++P EID + Sbjct: 201 TYQTLRQGGFDSIMDEKGYDMGVNILERIPCKHDKETVISSIQNMLNKYPAGEIDAIVCE 260 Query: 233 AIAAEAAMGEGRNLKTPL------TVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAV 286 A+G + +++ +V + +V+ +K G++ Q E+ + Sbjct: 261 GPDD--AVGALQAVQSAGRTELVGKIVGMDMPTEVWDAIKAGKIYGTVLQDPAEQCEVGI 318 Query: 287 EQAIRQLQGQS---VSDNVSPPILVLTPKNADREHIRR 321 + G + + ++T +N + Sbjct: 319 KTIETYFFGDKDSLKEKFIETDLPMVTSENVNDVTPSW 356 >UniRef50_A8RG89 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RG89_9CLOT Length = 349 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 52/315 (16%), Positives = 112/315 (35%), Gaps = 19/315 (6%) Query: 19 ADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLK 78 + A + + + K+ +K S S++ + G++E + G ++ Sbjct: 40 STAEKTGEGAGTDETEKAAGTEEKKQYKFGFTEMSAG-SFFDACYSGVEEVVKANGDEIV 98 Query: 79 VLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQK---QVASLPVIELVNAID 135 + G + A Q I+ G + + S + A +P++ +A+ Sbjct: 99 HV--EGKADSAYQLGVIEDFISQGCDLVFYNPSDAAASAAAVKALNDAGIPIVNFDSAVS 156 Query: 136 A-PQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAG 194 +V V + G G L++ H + V ++ P +A + +GF + Sbjct: 157 DLSKVNCFVVSDSYSCGQIAGEELIKN-HPEGGKVAVLDFPASAAAADR-AKGFVDTVTA 214 Query: 195 SP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNL---KTPL 250 +V E ++Q++L+ H ++ V I E A G + + Sbjct: 215 DGLFEVVAQMDAGAKPEKGLTVMQDLLQAHSDLTAVFC--INDECAQGAYSAITTAGDKI 272 Query: 251 TVVSFYLSHQVYRGL----KRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPI 306 + S + + G A+ + G+ + E A + L G+S + P Sbjct: 273 EIYSVNAGPEAKAAMTKDGVDGIWKCTAAQSPIGIGQKSAEVAYKILNGESYESEIKIPS 332 Query: 307 LVLTPKNADREHIRR 321 +TP+N D+ + Sbjct: 333 FAVTPENIDQYNKSD 347 >UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGZ6_9FIRM Length = 374 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 46/340 (13%), Positives = 108/340 (31%), Gaps = 27/340 (7%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQAST---------------PLKAKRAW 45 M+ LL++L M A + + P Sbjct: 1 MKRAFALLMALTMAAGLLAGCGSGSSTPAASSAAPAAPAASEAAPASEPAGQPAGGADKI 60 Query: 46 KLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEA 105 + + + +++ + G +AA YG ++ A G Q + I+ + G + Sbjct: 61 VCGVVLIDMTNQFFVDMIEGGNKAAEDYGCEVIWKSADGNFD--NQISLIENFIEQGVDC 118 Query: 106 ILLGSSTTSF--PDLQKQ-VASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWA 162 IL+ + P ++K A +P I + +D + V + + Sbjct: 119 ILVDPLDSEGLKPVIEKASAAGIPTITMAGQVDVETNYTTV-YNDEENTRIIAEMTAKMI 177 Query: 163 HGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLER 222 + L+ G S +G+ A + P V + D Q+++ Sbjct: 178 GEEG-KTALLYGNKGNLVSDLRQKGYYAGMEKYPNITVVEQPTNWDPPTGMKAAQDLIAA 236 Query: 223 HPEIDVVAGTAIAAEAAMGEG---RNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMV 279 +P++ + + A A + + + V S+ + + ++ G+ Sbjct: 237 NPDLKAIHCISDAVTLAAYQAVKTAGKEGEIIVTSYDGNDDALKAVESGQFTSTVLTGAK 296 Query: 280 WQGELAVEQAIRQLQG-QSVSDNVSPPILVL-TPKNADRE 317 G ++ A++ G + ++ + T +N + Sbjct: 297 KTGYWNIQVALQLASGVRPAEKILNLDTHFVMTDENKAKF 336 >UniRef50_B8I3I9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I3I9_CLOCE Length = 348 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 47/333 (14%), Positives = 112/333 (33%), Gaps = 14/333 (4%) Query: 2 RVLLFLLLSLFMLPAFSADNLLRWHDAQHF-TVQASTPLKAKRAWKLCALYPSLKDSYWL 60 +++ +L +LP + + + Q ++ + + + + SL + +L Sbjct: 11 KLVYLILGLFIVLPGCGGSTAEKSQATEPSISYQENSKVTENKDIIIAMVPKSLDNPVFL 70 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTT--SFPDL 118 + R G+ ++ L S Q A ++ + + I++ P + Sbjct: 71 DALEQGERVGRELGIKVEWLGP-MQSDTNIQIAIVESLIRRKVDGIVISCIDPGKIKPVI 129 Query: 119 -QKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPL-NVLLMPGPD 176 + A + V + G + G G+ L++ A GK + N+L+M Sbjct: 130 DKAVRAGIKVATFDSDSPGSNRLFYCGTDNYAAGIACGKALIKQAKGKQVLNLLIMTADK 189 Query: 177 NAGGSKEMVEGFRAAIAGSPV--RIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI 234 + E + GF + I ++D+ I ++L+ + DV T Sbjct: 190 ESNNLNERLNGFIETARAGGIQLNITGTLYCNDDVNIAGDMLENHIRTGDTPDVFFSTGG 249 Query: 235 A-----AEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQA 289 E+ G K + + V K+G GE+++ Sbjct: 250 WPFVTPPESLPGFHAWCKNGGISILVDTYYPVLEAAKKGLADSLVGQNFNKMGEMSIRNL 309 Query: 290 IRQLQGQSVS-DNVSPPILVLTPKNADREHIRR 321 + ++G+ + + + + + N + + Sbjct: 310 YKAIKGEKIPARFIDTGLELGSKSNFAKLLKEK 342 >UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G7J1_ABIDE Length = 360 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 45/325 (13%), Positives = 105/325 (32%), Gaps = 23/325 (7%) Query: 13 MLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARR 72 M A S+ + + + K + + +W + G++E A + Sbjct: 37 MSSAKSSSGAVTSETSSASKSGTGSTASVAGEEKYAIVLKTQSSQFWQDMKAGIEEEAAK 96 Query: 73 YGVDLKVLEAGGYSQLATQQAQIDQCKQWG-AEAILLGSSTTSFPDLQKQV---ASLPVI 128 GV + V + Q ++ G +AI + + + + I Sbjct: 97 LGVKVDVQSGNTEDDVEGQVQVLENFVSTGEYKAIGVAPISDVNLNNAIAEGCSKGIVFI 156 Query: 129 ELVNAID-------APQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGS 181 ++ ID + + V ++G L++ G V ++ G A Sbjct: 157 DIDEKIDAKALGELGGGLYAYVATDNKEVGETGAGELLKQV-GNNAEVAIIEGKAGALSG 215 Query: 182 KEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG 241 ++ +G +AA + ++VD D D ++ M+ +P + + AMG Sbjct: 216 EQRRDGAKAAFEAAGAKLVDSQPADWDRTKAMDVATNMISANPNLKAIYCC--NDTMAMG 273 Query: 242 EGRNLK---TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSV 298 +K + V + + + G + + G A+ ++ ++ + Sbjct: 274 AVEAVKKSGKDIKVCGTDGNDDAIKAVADGELAATVAQNPKLVGATALNLMVKAVKENAK 333 Query: 299 SD------NVSPPILVLTPKNADRE 317 + +++T NA Sbjct: 334 PEAGAEVTQTGIAAVLITKDNAKEY 358 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 46/330 (13%), Positives = 112/330 (33%), Gaps = 26/330 (7%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 MR + +L+ +L + + + P + S +++ Sbjct: 1 MRKVTYLMTTLAIAL------------STFAFSANAAPKGKDAPVTILVSALSYSFPHFV 48 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD--- 117 L ++ A+ G ++K++ + G Q A I+ G + I++ + + Sbjct: 49 FLQEQLEAEAKTLG-NVKIIRSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVL 107 Query: 118 LQKQVASLPVIELVNAIDA-PQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPD 176 + V+ + ++ P+V + V + G V+ + ++ + G Sbjct: 108 RTAIKEGISVVTIDRPVNGVPEVIANVAADNLIGAQRQGEA-VEKLFPQGATIINLQGIP 166 Query: 177 NAGGSKEMVEGFRAAIAGSP--VRIVDIALGDNDIEIQRNLLQEMLE--RHPEIDVVAGT 232 + + +G + P + V + + ++ + +L +P +VAG Sbjct: 167 GDKTANDRSKGVHDTLDKHPELYKFVAEQTARFNRDQGLSVTENLLTGLANPPTVIVAGN 226 Query: 233 AIAAEAAMGE--GRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAI 290 +A A R LK + + + S + ++ G + QG AV+ Sbjct: 227 DDSALGAAQAVEARGLKGKIAIFGYDGSTDALKAVRDGVLTGTVDQYPGKQGREAVKILT 286 Query: 291 RQLQGQSVSDNVS--PPILVLTPKNADREH 318 ++ + V + +T KN + Sbjct: 287 DYIRTGARPATVDVLVSPVAITSKNLNDAE 316 >UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH93_9FIRM Length = 362 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 46/352 (13%), Positives = 114/352 (32%), Gaps = 36/352 (10%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTV--------------QASTPLKAKRAWK 46 M+ L+ + + +L A+T +K + Sbjct: 1 MKKLMAIAAATLLLTTSMTAMAEGVAFNDPAAERPESIEYPVEGLSWAATTDVKVNGDYT 60 Query: 47 LCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAI 106 + + + + + + G +AA G + +L Q ++ Q G +AI Sbjct: 61 IAMIVKNNTNPFMNGVLNGFSKAAEDIGFEAMLLSPQTADSNEDQVRLVEDMIQSGVDAI 120 Query: 107 LLGSSTTSF---PDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAH 163 + ++ + A +PV+ + ++ G + YL + Sbjct: 121 CIHPVDSNGIVPALEKAWDAGIPVLVQGTQANTDKIYGWYGTKYADEATLIAEYLAEKLD 180 Query: 164 GKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLER 222 K NV+ + GP A + + + A P + +++ G+ + ++++ ++++ Sbjct: 181 YKG-NVVYITGPQQAQNAIDEINATHAVFEKYPDLNLIEEQPGNFNRATSMSVMENLIQK 239 Query: 223 HPEIDVVAGTAIAAEAAMGEGRNLK----------TPLTVVSFYLSHQVYRGLKRGRVIM 272 + E D+ E AMG ++ + V + ++ G + + Sbjct: 240 YSEDDIDWVIGGNDECAMGAIAAMENAGWKLGFEDGGIGVSGIDCNKDASYAMQEGTLTV 299 Query: 273 AASDQMVWQGELAVEQAIRQLQGQSV-------SDNVSPPILVLTPKNADRE 317 + + V G + + L + D + +V+ N D Sbjct: 300 SVNPDPVSLGYIGAAFLVNYLNDGDLFPEYVAWPDFQTADDVVIDASNIDNY 351 >UniRef50_A9D050 RbsB protein n=2 Tax=Alphaproteobacteria RepID=A9D050_9RHIZ Length = 344 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 58/343 (16%), Positives = 119/343 (34%), Gaps = 17/343 (4%) Query: 4 LLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLN 63 +L L S A++ D A +++ + P+ + +Y++++ Sbjct: 9 MLALGFSALATTAWAQDYPKPVPLADGAQAPIEAIKPKNEKFRVAYMPPATEFNYYIAIG 68 Query: 64 YGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPD---LQK 120 G++ A GV++ +L + + Q I +AI+ G+ Q Sbjct: 69 EGIKAVAAEEGVEVFMLAPQSGADINGQMGMIQDVLTQDVDAIIFGTHDEFAAAPLLKQA 128 Query: 121 QVASLPVIELVNAIDA--PQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNA 178 + V+ + + I + VG ++ + ++ KPLNV ++ G Sbjct: 129 VDKGMAVVMINSDIANFPTPIHGVVGYSQRNGTHKLAEWAIETYGSKPLNVGIIEGQPGY 188 Query: 179 GGSKEMVEGFRAAIAGS-PVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAE 237 + E V GF I G+ +V G ++E ++L+ HP++D++ A Sbjct: 189 HST-ERVGGFLDGIKGNENFDVVVSIDGKWNVEGGNTAGMDILQSHPDLDMIF--AANDY 245 Query: 238 AAMGEGRNLK----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQL 293 +G K + + ++ + G V + G+ A+ I L Sbjct: 246 MIIGASFAAKALGRSDIVLLGNDGDTSGLEEIAAGSVTATVNTSPFLMGKAAMHATIDAL 305 Query: 294 QGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQH 336 G + P + A +R P P Q+ Sbjct: 306 NGTYPGGWIETPTSIEDKDGA----VRVLQEPEKLFPQPSKQY 344 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 123/352 (34%), Gaps = 45/352 (12%) Query: 3 VLLFLLLSLFMLPAFSA---------DNLLRWHDAQHFTVQASTPLKAKRA--------- 44 V + L SL + + D +++ A TP + Sbjct: 15 VAVSLTASLALATGCAKSEDDDSGPKDKNATATESKDAGQVAETPAAGGKGCTLDAYGAK 74 Query: 45 ------WKLCALYPS-LKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQ 97 + + + ++ +++ AR+ GV L + A Q + + Sbjct: 75 KTDLASATVGFSQSEKEANPFRIAETASLKDEARKRGVKLLAVNAQSQFS--KQISDVQD 132 Query: 98 CKQWGAEAILLGSSTTSF--PDLQKQVAS-LPVIELVNAIDAP---QVKSRVGVPWFQMG 151 GA+ +++ + P L+ A +P++ + I+A S +G + + G Sbjct: 133 LIAKGADLLVIAPLNSDGWEPVLRAASAKKIPIVTIDRKINAGPCKDYVSFIGSDFVEQG 192 Query: 152 YQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGS--PVRIVDIALGDNDI 209 + +++ GK V ++ G + E +GF+ +A +++V GD Sbjct: 193 RRAADKMIEATGGKG-EVAILLGAAGNNVTTERTKGFKDRVAEKAPGLKVVFEQTGDFAR 251 Query: 210 EIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLK------TPLTVVSFYLSHQVYR 263 E +++ +++++ P I + A E +G LK + +V+ + + Sbjct: 252 EKGQSVTEQLIQSKPGIKGIY--AENDEMGLGAVNALKSAGKKPGAVKIVTVDGTRNAVK 309 Query: 264 GLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNAD 315 + G + G LA + +G+ V ++ NA+ Sbjct: 310 QIVDGWISGVIESNP-RFGPLAFQTLDTFTKGEEVQQDIVIKDSAYDKTNAE 360 >UniRef50_B9K0T2 ABC transporter substrate binding protein (Ribose) n=2 Tax=Agrobacterium RepID=B9K0T2_AGRVS Length = 329 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 58/321 (18%), Positives = 115/321 (35%), Gaps = 19/321 (5%) Query: 21 NLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVL 80 + + + + + +++ + D+++++++ G + AA G + Sbjct: 9 SATALALSAPAVLAVTRAQAENKKFRIALIPGLTTDAFYITMHKGAEAAAAAIGAQIIFQ 68 Query: 81 EAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF---PDLQKQVASLPVIELVNAI--- 134 A TQ +D +AIL+ + T+ P + A +P+I + I Sbjct: 69 GAP-DFNPVTQVPVLDAVIAKKPDAILIAPTDTTQLVQPLKKAADAGIPMITVDTFIGTG 127 Query: 135 -------DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEG 187 D S + G R L K V + + + +G Sbjct: 128 DYQTGAGDGDFPLSYIASDNVLGGEIAARSLALAIGDKG-KVYVSNVKPGVSTTDQREQG 186 Query: 188 FRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAI--AAEAAMGEGR 244 F++ +A P + +++ DND + LQ + R+P++ V G + +A G + Sbjct: 187 FKSEMAKHPGITVLETQFNDNDANKAASQLQAVYARNPDLAGVFGANLFSGLGSANGVQQ 246 Query: 245 NLK-TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVS 303 + + VV+F V LK G + A + G V A L GQS+ + Sbjct: 247 AGQSGTIKVVAFDAPGSVVDNLKSGLIDFAIAQHPAEIGYYGVISAYAHLTGQSIPTKIG 306 Query: 304 PPILVLTPKNADREHIRRSLS 324 V+ N + R + Sbjct: 307 TGFTVINKSNVTDPAVARFIY 327 >UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostridiales RepID=C5EPY5_9FIRM Length = 332 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 59/339 (17%), Positives = 122/339 (35%), Gaps = 24/339 (7%) Query: 1 MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWL 60 M + L+ +F+L L + V S ++ + + Sbjct: 1 MFKKHWCLIVIFILCTLLGITLYNTSNQPVSWVPESI---DTPGLRVGFSQIETDNPWRT 57 Query: 61 SLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSST--TSFPDL 118 + +EA G+D E Y+ + Q I + + + +++ + + P L Sbjct: 58 AQINSFREALIPNGMDFIYHEPERYT-VEWQVEDIHRLIREKVDYLVIVPADLASLAPVL 116 Query: 119 Q-KQVASLPVIELVN---AIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPG 174 Q + A +PVI + ID S + + + G L + P ++ + G Sbjct: 117 QDAKEADIPVILIDQSAETIDQSYYISLISADYLKEGQICADLLAEKFGDTPCRIVEIYG 176 Query: 175 PDNAGGSKEMVEGFRAAIAGSP-VRIVDIALGDNDIEIQRNLLQEML----ERHPEIDVV 229 +++ G++ +GF A+ P + I+DI G+ D + ++ L ID V Sbjct: 177 TESSPGAQARSKGFHQALQQYPNMEIIDIEYGNFDRVTAQKAMENALIKASTSGQPIDAV 236 Query: 230 AGTAIAAEAAMGEGRNLK------TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGE 283 A + E +G + +K +++VS V + + G + W G Sbjct: 237 F--AHSDEDGLGALQAIKVAGLAPGRISIVSINGIQDVCKAIIAGEYLGTVESNPRW-GF 293 Query: 284 LAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRS 322 + ++ +G V P ++T +NA + Sbjct: 294 IVASLIQQKERGYKPFPTVMIPYRIITAENAAEYSLTAY 332 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 110/323 (34%), Gaps = 24/323 (7%) Query: 7 LLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGM 66 + L +L A + L Q L A Y + + Y+ LN G+ Sbjct: 3 IGTGLLILTAGAMLLLGGCGHGDASGRQHEARL-------FGATYMTRNNPYFDVLNEGI 55 Query: 67 QEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSF--PDLQK-QVA 123 +E G L + Q QI + G + + L P L + A Sbjct: 56 EEVVEANGDILLTRDP--LQDQEKQNEQIQEMIDEGIQMLFLNPVDWEKVQPALDACREA 113 Query: 124 SLPVIELVNAI-DAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSK 182 + +I + + D V S + +Q G +++ ++++ P + Sbjct: 114 GVGIINVDTVVKDRDSVISIIETDNYQAGQLCALDMMKR--KDEAKIVILDNPIQTSITN 171 Query: 183 EMVEGFRAAIAG-SPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMG 241 +GF IA ++V +IE+ +++ ++L R DV+ G A+G Sbjct: 172 -REQGFLDTIADNHNYQVVYREAAAGEIEVSSHVMADLLRRDISFDVILG--GNDPTALG 228 Query: 242 EGRNLK-----TPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQ 296 L+ + + S L G V ++ G A E A R L G+ Sbjct: 229 ALAALQQARREEGVLIYGIDGSPDFKAILDVGYVTGTSAQSPRSIGRKAAETAYRYLDGE 288 Query: 297 SVSDNVSPPILVLTPKNADREHI 319 V +S P ++T N I Sbjct: 289 PVEKYISMPSTMITRDNLHEFEI 311 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.167 0.447 Lambda K H 0.267 0.0513 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,881,257,858 Number of Sequences: 3077464 Number of extensions: 81209045 Number of successful extensions: 326129 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1952 Number of HSP's successfully gapped in prelim test: 5769 Number of HSP's that attempted gapping in prelim test: 306834 Number of HSP's gapped (non-prelim): 8514 length of query: 342 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 213 effective length of database: 643,403,500 effective search space: 137044945500 effective search space used: 137044945500 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 94 (40.5 bits)