Content-Type: text/html
Reference sequence (query): batch____ Identities normalised by aligned length. Colored by: property
HSP processing: ranked Search cycle: 2
1 [ . . . . : . . . . 1 . . . . : . . . . 2 . . . . : . . . . 3 . . . . : . . . . 4 . . . . : . . ] 477
batch____ bits E-value N 100.0% 1:477 MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVPLEDILESIGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
1 UniRef50_P06223 RNA polymerase sigma-54 fac... 583 1e-165 1 88.9% 1:477 1:477 MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVETKEAEDRESLDTVDALEQKEMPEELPLDASWDEIYTAGTPSGNGVDYQDDELPVYQGETTQSLQDYLMWQVELTPFTDTDRAIATSIVDAVDDTGYLTISVEDIVESIGDDEIGLEEVEAVLKRIQRFDPVGVAAKDLRDCLLVQLSQFAKETPWIEEARLIISDHLDLLANHDFRSLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKVNDRWVVELNSDSLPRLKINQQYAAMGNSTRNDADGQFIRSNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV
2 UniRef50_C9XTZ3 RNA polymerase sigma-54 fac... 581 1e-164 1 88.9% 1:477 1:479 MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDIHDEIATQETQDSEGLDTAEALEQKEMPDELPLDASWDEIYTAGTPSGTGTDYIDDELPVYQGETTQSLQDYLMWQVQLTPFTDTDRAIATAIVDAVDDTGYLTVTVQDILDGMGDNdiGPEEIEAVLKRVQRFDPVGVAARDLRDCLLIQLSQFSAETPFLAQARQIVSDHLDLLANHDFRSLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNADSIPRLKINQQYAAMSGSARNESDSQFIRSNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFDQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
3 UniRef50_P0A171 RNA polymerase sigma-54 fac... 568 1e-160 1 54.5% 1:477 1:497 MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEdaEVQDNSFQESTVSADNLEDGEWSeeLPVDTAWEDIYQTSASSLPSNDDDEWD-FTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEEICAGfpELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTEAKRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVVPDVIVRKDSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKYRESLGIAPSSERKRLM
4 UniRef50_P08623 RNA polymerase sigma-54 fac... 544 1e-153 1 56.8% 1:477 1:502 MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLERQEDAEDYDSPdaASEDGGTLEEGDWHERIPSELPVDTAWEDIYQTSASNLPSTDEDEWD-FTTRTSTGESLQSHLLWQLNLTPMSDTDRLIAVTLIDSINSDGYLEAALEEILASlpELGVELDEVEMVLRRIQQFEPAGIAARDLSESLLLQLRQLPPDTPWLEEAKRLAKDYLDLLGNRDFTQLMRRMKLKEEELRPVIELIQSLNPRPGAQIESSEPEYVVPDVIVRKHNDRWLVELNQEAVPRLRINPHYAGFIRRADASADNTFMRNQLQEARWFIKSLQSRNETLMKVSTQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYELKYFFSSHVSTAEGGECSSTAIRAIIKKLIAAENPKKPLSDSKIAGLLEEQGIQVARRTVAKYRESLSIAPSSERKRLM
5 UniRef50_A0Z7G1 DNA-directed RNA polymerase... 539 1e-151 1 51.2% 1:477 1:475 MKQSLQLKMGQSLALTPQLQQAIKLLQLSTLDLQQAIEETLESNPLLEREEDGDSHEETQSSQSD-VDFTTPVAEPNSADELPVDTRWEDLMPSSAPPPSSPDGEMGQFAD-RDAEPETLHDQLHWQLNLTRFSVTDHMIATAFIDAVDANGRLTQTPEEILDALRDPEIELDEVLAVLHRLQHFEPTGIFASDLRECLLLQLRQMDEEVPHRNTAGAIANRHLESIATADPRQLSRRLRTTPEDVIGALNLIRSLDPTPGTSVGESTTEYIIPDVFVLRKNGHWRVELNPDIAPKLRINALYSELVGQTGSASDKSYVRENLQEAKFFMTSLHNRNETLLKVASKIVEHQREFLELGEEAMKPLILADIAQQIGMHESTVSRATTRKYMHTPRGIYELKFFFSSHVATIEGGERSSTAIKALIKKLVQGENTKKPLSDNKLGVLLEEQGIIVARRTVAKYREQLNIPPSNERRRLL
6 UniRef50_Q1YU16 DNA-directed RNA polymerase... 536 1e-151 1 48.9% 1:476 1:490 MRQGLQLKISQQLTMTPQLQQAIRLLQLSTLDLRQEMIEQLYSNPLLEMDEDIPESPGQDAdeRNSEQNPEYEWNDEIPKDVPVDANWDDVYSPPTTAASSSGGE--VNLEQVFQVTESFQGHLEWQLNLTPFSDRDREIASAFIDSIDSSGFIAAELSDITAHIHYDDIeeDELVAVLHRLQQFDPPGVFARSISECLTIQLNQLSPETQYLQSAKHLVDGFLQDIASVDSARLAKKTGLEINELQGALQLVRGLNPRPGESLSSNDVEYIVPDAYVEKIKGRWRVKLNDSNMPRLRINDSYSSLIKRSDSSDQNQFLKDNLAEARWFLRSIESRNETLMRVAMTIVELQRGFLDHGPVAMKPMVLSDIASKLELHESTISRVTTSKYLATPQGIFELKYFFSSHVSTAGGGECSSTAVCAILKELIGAEQPEKPLSDSKLTSMLEQQGIQVARRTVAKYRESLGIPSSSQRKRF-
7 UniRef50_P24695 RNA polymerase sigma-54 fac... 532 1e-149 1 48.3% 1:476 1:475 MKQGLELKLGQHLAMTPQLQQAIRLLQLSTVDLQQEVQGMLESNPLLDEETGDEGGGGPIPETVELPSEedLAAENILPDELPVDSQWDDIFDMGTSGSGNGSDEDLPDFESRNSRTQSLQDYLRWQADMTHFTADERNMAELIIDAIDERGYLADSLEDLAATMN---VQEDALLAVLLRVQDFDPPGVGARNLSECLLLQLKQmeKDDAHVLLAQRIVKDHLQALGRHDYPRLCTVLGVDEAALRAAMALISALNPKPGEDVGTESTEYVIPDVIVRWAGSRLRTDLNPEAMPKLRINRHYADM--AGGKDAAHKYIQDQLNEARWFIKSLQSRQDTILKVARAIVERQKDFFANGPESMRPMVLRHIADAVEMHESTVSRVTNQKYMITPRGLYEFKYFFSSHVGTDSGGSASATAIRALLIKMTQAEDAQHPLSDAEIARVLADQGIQIARRTVAKYREAANVPPASQRRRL-
8 UniRef50_Q2LSN3 RNA polymerase sigma-54 fac... 529 1e-148 1 38.0% 2:477 4:487 -ELKQNLKLSQQLIMTPQLQQAIKLLQLSRMEMIDVINQEMEENPLLEDAPADEYDETErtPEREELRGIERTEEITGEGDGKEEFDWNSYLEDYGTFGTTYddGEAPNWDNVLTEKSTLTDHLMWQLKLSRLTEQEMRVGEQIIGNLDANGYLAASIEEIA---GLENVSEKDVETVLKKIQEFDPPGIAARNLQECLLIQVKMLGIQN---QLVEAIIQDHMKDLEIKNYNHISRKNKVPVDDVFQAVMIISNMDPRPGSVYNEEKIQAIIPDVYVFKSGDDYKIVLNDDGLPRLRISNFYKEIMgdSNSESGRKYIRERVQSATWLIKSIQQRQRTIYKVAESIVRHQREFFDRGINYLKPLVLRDIAYDVEMHESTISRVVTNKYMYTPRGIFELKYFFSSSIQRKSGEAIASKSVKEEIRRVIGAEDPLHPYSDQEIVSILESKGIKIARRTVAKYREMMNILPSSRRRRYF
9 UniRef50_P28615 RNA polymerase sigma-54 fac... 528 1e-148 1 46.4% 1:476 1:493 MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTENPLLERENDWIESPLRVAADGseARADGAADDDSYGDSGNGDDYGSSDWSLDDFARRPQGDEDEKTPMQLREAEPTLREYLMEQLTPLKISARDKGLAIFLIESLDDDGYLSASLEEIceLPEELEFEIEEVHAILTLLQSFDPPGVGARNAAECLALQLRRLTH--PQRELALNIVTNHLELLAVRDYTRLKKALQVDEAALKSAHELIRSLAPYPGHAYSRPEADFVVPDVFVRKGGGGWIAQLNPDVMPRLRINDMYAQILRGAKGESGTAGLQQKLQEARWLIKNIQQRFDKILRVSQAIVERQKNFFSHGEIAMRPLVLREIADTLGLHESTISRVTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEDPRNPLSDSRIAELLGEQGFVVARRTVAKYREALKIPAVNLRKSL-
10 UniRef50_D0LNA6 RNA polymerase, sigma 54 su... 527 1e-148 1 36.9% 1:477 3:494 MEMRQELKLSQQLVMTPQLQQAIKLLQLSRMELVDLVREEMLENPVLEEDSedAEQVTRQVEEAGHTELPVAESNKDTASEVKADddWESYLDDYSSGPsrPDNDDLPSHEATLTRSESLSEHLLWQLKMSAMDETHMAVGEVIIGNIDASGYFKEplEDLASEC---EVSVDEAEEVLMKIQTFDPVGVGARSLAECLLIQAMHDGQDD---ELVVKIIKSHLPNLERKNYQAIARDLKQPLEEVYEAAKVIMEFDPRPGRQYSSEDPHYITPDVYIHKVGDRYFVVPNDDGLPKLKISSFYRSAL--SKNGNAKDYIQDKLRSAQWLIRSIQQRQRTIIKVSESILKFQREFFDRGIAHLRPLILRDVAEDIGMHESTISRVTTSKYVHTPQGIFELKFFFNSGISRTDGDDLASQAVKSKIKKIIGDEDPKKPLSDQKIAAQLKSGGIAIARRTVAKYREQMGILSSSKRKQVF
11 UniRef50_A0LCX7 RNA polymerase, sigma 54 su... 526 1e-148 1 44.1% 1:476 3:507 LGMELKLRMGMQLVMTPQLQMAIRLLQMSSMDLQEYLQEELEKNPLLEREDENGNAVDGDTadGFQIDEPQTPEVTHLSEDLPLDAEWSDVYSDAGSNFESHNNseAPPLENTLVRNDTLSDHLIWQLGLSARDEHERALGMALVDAIDENGYLTAPLESFQETTG---ASLDDLEDALLLIQSFEPSGVGARNLAECLLLQLKA----DRMAVAPYTSLLAHLDDLARRDFRKLSRVLKLSEEDLASAVAVIHGLDPKPGLAYGSDQTSYVVPDVYVRKQNGKWVVEINPETQPRLRINRHYQDQISRYASADDKRFMTESARNAQWLIKSLEQRSSTIYRVAESIVRFQEDFLDKGPEYLKPLILKDVADDIGVHESTTSRVTSNKYMHTPRGIFELKYFFSSSLTSQSGESHSSEAVKFKIRKLVESEPLRRPFSDEKLAKMLKEQGINVARRTVAKYREALNIPSSSRRKQL-
12 UniRef50_B3E461 RNA polymerase, sigma 54 su... 525 1e-147 1 34.2% 1:477 3:482 MEMRQQLKMTQQLVMTPQLQQAIKLLQMTRIELQDVVRQELEENPILEESSELEEVREGEtaELPDEALANTDSFQEVEAGEETLRDWDSYLDGYNYTSgsGDDDDKLSFENLLTRKGTLFDHLHWQLQMGKYSDEEQRVGEEVIGNIDDDGYFCSTIADVAVVC---DVPEPVVETMLERIQEFDPSGVGARSLQECLLIQARSLGME---GSVVEAILLRYLPEVESRNYKQIARSLKVELEHVLAAIRVIAGFDPRPGRLYSSDEVHYISPDIFVHKVGDDYVVLLNEEGLPNLRLSPFYLEaaGGSMDAKAEEYVGDKMRAAQWLIKSIQQRQRTIFRVAKSIVKFQREFLERGVEGLRPLVLRDVAEDIGMHESTISRVTTNKYMQTPQGLFELKYFFNSGLSTSDGESVSSESVKNRIKDIIDKEDPSKPLSDQKIAEMLSDATVNIARRTVTKYREMMRIGSSSERRRHF
13 UniRef50_C8VY02 RNA polymerase, sigma 54 su... 520 1e-146 1 34.9% 1:476 3:472 MGYGLHVEQTQKLIMTPELRQAITVLQLSSLELSMYIDQQLQENPMLerEDDLDRIEENEGAEGDASGGEEELSRQE------CDVDWEEYFHDSDLDLGRREKLAEQsyENFLTQAPNLTEYLMMQLNLSRCGDYLKAIGEYIIGNVDHNGYLHVSVKEIAEQL---EVSQSKVEQALSVIQSFDPLGVGASSLQECLLIQVRYLNIKN---KLVAELIEKYLPDIAKGRLNQIAQQLGVAVTEVQEAADIIKTLDPKPGRNFSATnvRYIVPDVIVERVEGEYIILVNDSSVPRLTINTAYRSVLTQDkdLQTRRFVESKLNSAAWLLKSIEQRRLTLYKVASCLVDLQKDFMEYGVKHLKPLNLKTVAEIVGLHESTVSRATSNKYIQTPQGVFEMKFFFSTGLTSAGGGMTSAESIKKTLRELIASEDARKPLNDQKISDIFAERGIKISRRTVAKYRDELNIPPLKQRKRY-
14 UniRef50_A5CYP0 DNA-directed RNA polymerase... 520 1e-146 1 33.0% 1:476 3:471 MGYGLNMEQTQKLIMTPELRQAITVLQLSSLELSMYIEQQLQENPMLELTDDDYGREE---------EFEPTVEPEPDGGGPEYDLDWEEYLQESSDDPgrWQDQQEYSYENFLYQMPTLTEHLTTQLNLSPCRGKDKLIGEYLIGNIDENGYLRVPLKEVAACLN---VSTSRVFKVLKVIQGFDPPGVGARSLEECLLIQVGQLGIKNEILN---KLIKEHLSDLAKGKLNRIAQSLGVTVQEVQKAADVLRTLDPKPGRNFSnnDTRYIVPDIVLEKVEGEYVILINDVAIPRLTINSTYRSVLSSncDSGTRRFVESKLNAAAWLIRSIEQRRLTLYKVAKCLVDLQRDFLDYGVKYLKPLNLKKVAEMVGLHESTVSRATSNKYIQTPQGVFEMKYFFCTGLNNTAGNMVSAECIKKMLQEIVAGEDARSPLNDQKISELFRQRGIKISRRTVAKYRDELGIAAIRKRKRY-
15 UniRef50_C8R228 RNA polymerase, sigma 54 su... 520 1e-146 1 37.9% 1:475 3:497 LELRQSLKLSQQLVMTPQLQQAIKLLQLSRLELMETVQQELEVNPVLEEGLDLYEDGGNPADdnNGPEEELGRSEPEQTAEISMDsdWGNYLNEyySGAAGRDDDAPPSRLEIMSVRPSLQSHLQWQLNLSHISDREKEIGEFIIGNLDENGFLLVSPEEI---CSQTDCTPAEADHLLSRVQEMDPAGVGAQDLRHCLLLQLARLEAADS---LAARIVRDHLSLLETRNYPGLAKATGASTAEVSAAVEVITGLNPRPGRLYSDADPVYIVPDVYVYKLGEEYVIMLNDEGLPRLRISNYYRDILDktAPGATKDYVQDKLRSAMWLIKSIQQRQRTIYRVVESLLKFQRDFFEHGVNKLKPMVLRDVAEDIGMHESTISRVTTNKYVHTPQGTFELKYFFNSTISTEAGDGMASESIKQRLKSIVQHEDRKKPLSDSAIAAVFSRDGIRLARRTVAKYREQLGILPSKLRRR--
16 UniRef50_Q6MPK9 RNA polymerase sigma-54 fac... 517 1e-145 1 37.9% 1:477 1:478 MALRQTMNLSQSLVITPQLQQAIKLLQMSRMELESAVRSELEENPILEEAESaeEDLQRTKEAANEVEHSETPDQQNIQDPQKQDeeWESYIEANQKPPQSggSEEIMNYENVITASQTLHDHLYWQVKMNGFSEEEERAADALIGAIDDDGYIKVPLEQIAEE---EKVDLALLEDTLTLIHEFDPPGVGARDLQECLLIQAKHMEEDT---HDLVTLIKNHVKDLEKKNYEAIAKALNRDVEDIVEICKIIYAMDPKPGRAFVSSDTHYVTPDVYVYKVGDDYVVSLNEDGLPRLKISNFYKNMLkkTTGDKTQDYIQEKLRSAVWLIKSIHQRQRTIYKVTESIVKHQREFFEKGSEHLKPMVLRDIANDIGMHESTVSRVTTAKYVHTPQGIYELKYFFNSGISSSDGDSLASESVKIKIKDLVAKEDPKNPLSDQKIVDLLKVEGIQIARRTVAKYRDVLKILPSSQRKKYF
17 UniRef50_D2UEM7 Probable rna polymerase sig... 515 1e-144 1 41.0% 1:476 1:484 MKARLQTSLGQHLVMTPQLRQAIKLLQMSSAELEVELAAAVESNPLLEWSEDaeHTDSQEASGAAADGDTLTPVADDHAEASPADSGEDWTTTDPAWSGGSgdDDDTSSLAERVAEPETLIGHLLWQLHLSPLSARDRSIGVALIDALDGDGYLREPLTAIAETlpNIAAGEDEILTVLHQIQRFDPTGIAARSLEECLTLQLGMLPESTPGLELAHTIVNGSLEKLPRSGIAGLAHALKRPVADVDTAVALLRSLDPRPGKQIGegSDTYVVPDCVVWRQRGVWHAALSAHAQPKVTIHRGYERLIRQCGESDAG-YLRGQLQEARWLLKSVEARGETLLKVTRCLLRQQAGFLEFGEQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPLRAFFASGIDTDSGGEASSTAIQAMIRRLIETENPRKPLSDAKLADLLKNTGVPVARRTVAKYREAMNIPASHERVRI-
18 UniRef50_Q5WZ64 RNA polymerase sigma-54 fac... 515 1e-144 1 48.5% 1:474 1:460 MKPTLQIGIGQHLTLTPQLQQAIRLLQLSTFDLQQEIQLVVESNPLLEATPVEEKEDAQINTNQNHDEYS--------------DFQWSQLYNN--LNKRNNFEENDYNFDNLHCTTTNLQDHLNWQLDLTPMSDIDRVIATTIIDAINDDGFLTIPVAEIHASLNSDDfdIEEIEAVRHRLQLFDPVGCASVNLAETLVLQLEQLPLEPKLLATAKKVILEDIELLGQHNYRQLMKNHQISEKTIHEILQVIHKLNPKPGSLIHQDNIEYVIPDLTVKKIDNQWKVFLNQDILPRLSINSQYAALIQRANNSLDNQFLKHNLQEARWFLKSIQSRQETLLKVATCIMEYQHGFLEFGEEAMKPLILNDVASALDMHESTVSRVTTQKFINTPRGVFELKYFFSSHVNTDNGGECSSTAIRAVIKKLISAENRKKPLSDSKIAQLIGEQGIKVARRTVAKYREAMGIPPSNERK---
19 UniRef50_P77998 RNA polymerase sigma-54 fac... 514 1e-144 1 42.2% 1:476 1:478 MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASDIAVDSSPSASTEQPQREeaPAERDEDWSQDELQWTGSGSGGSFDDDESGDAAERVAESETLADHLLWQLHLSPLSPRDRQIGAMLIDALDEDGYLREPLSAILETLAlaAVDEADVLTVLHQIQRFDPVGVGARTLGECLALQLGVLDADTPGRELALQIVAGPLERLPRSGVAGLAHELKRSTADVEQAVQLVRSLDPRPGKQIGdsQDTYVVPDCVIWRQRGVWRAALAGRAQPKVTIHRGYENLIRSCGESDAG-YLRGQLQEARWLLKSLEARGETLLRVVRCLLEHQAGFLEFGAQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIALRAFFASGIDTDSGGEASSTAIQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRI-
20 UniRef50_P30333 RNA polymerase sigma-54 fac... 513 1e-144 1 38.1% 1:475 3:513 LTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLTTFVEEELERNPLLERANDEASGGEAPAEAGQFSDSDGGHNDEpaEIEQTLDTGLDNVFSeyTEWGGGASGDEDYNLEAFVAAEVTLGDHLAEQLSVAFTAPAQRMIGQYLIDLVDEAGYLPPDLGQAAERLG---ASQQEVEDVLAVLQKFDPPGVCARNLSECLAIQLRELDRYDP----AMQALVEHLDLLAKRDIAGLRKVCGVDDEDIADMIGEIRRLNPKPGMKFGAARLQTMVPDVYVRPgdGGWHVELNSDTLPRVLVNqyYSELSKKIGKDGDKSYFTDALQNATWLVRALDQRARTILKVATEIVRQQDGFFTHGVAHLRPLNLKAVADAIQMHESTVSRVTANKYMATNRGTFELKYFFTASIAsdGGEAHSAEAVRHHIKQLIDSEAPAAILSDDTIVERLRASGIDIARRTVAKYREAMRIPSSVQRRR--
21 UniRef50_Q1DDF1 RNA polymerase sigma-54 fac... 513 1e-144 1 36.3% 1:477 3:505 MELKQSLKLAQQLVMTPQLQQAIKLLQLSRMELLEQVREEMEQNPLLEQPDEQAPGDVGDKEPGEASLEADNMeeFKADGEGPPEIDWEQYLNSyaSNKGNVATDDMPSFEANLVKKADLVDHIQEQLGTLRLNDAERRIAMLILGNLDDDGYLKLPEVdlIRLANEADVPMHVAERTLRRIQMLDPRGCGARDLQECLLIQLQ--GIREPHAPLLGLIIKRHMKYLESKNLPAIAKDLKVTLEEVVGAVRLLPKLDPKPGRNFSGDDAQYISPDVFVYKMGDDYTVVLNDDGLSKLRISGTYRNALKTggPGQTKDFIQDKLRSAMWLIRSIHQRQRTIYKVTESIVKFQRDFLDKGIAYLKPLILRDVAEDIGMHESTVSRVTTSKYVHTPQGIFELKYFFNSSIARVSGEDTASEAVKHHIKQLVAQEDARNPYSDQKIVELLRSQGTEIARRTVAKYREVLGILPSSKRKRYY
22 UniRef50_B5EEZ6 RNA polymerase, sigma 54 su... 512 1e-143 1 37.1% 1:477 3:515 IEMRQQMKMSQQLVMTPQLQQAIKLLQLSRLELQDVVRQELEENPILDEVIEQEEIREPEQIELREKEAEPEAAASDFQeeETREADWDSYIDGYNYSSGEqdDEDRPSFENLLTKKSTLFDHLMWQLSLTRLTEREIVVGAEIIGNIDEEGYLRASLEDVASalGSDACEEelVDSVLKRIHEFDPVGVGARDLRECLLIQVGSLGM---GGSLVESLLRDHLKDLESHKYKQAAKVLGVEVNDILAATRIIAELDPKPGRVFGSDDVQYISADIFVHKVGEEYVVMLNDEGMPNLRINPIYAPDAKSSrdKVAEDYIGEKMRSALWLIKSIQQRQRTIFKVAKSIVKFQREFLDRGIEHLRPLVLRDIAEDIGMHESTISRVTTNKYMQTPQGLFELKYFFNSGISTGEGDFIASESVKSKIKELVDNEDSKRPYSDQRLAELLSDHNIVIARRTVTKYREMLRIGSSSERKKHF
23 UniRef50_B8DJR2 RNA polymerase, sigma 54 su... 512 1e-143 1 38.6% 1:477 3:477 LELRQQLKLTQQLVMTPQLQQAIRLLQLSRLELVETVQQEMLENPFLEEAQDEGPQVETPDPREAATAAADVAYDREIAR----DADWEDYLGDFASTSRQSTVRETEMPEEMTSFepSLEGHLMWQLRLSSLTERQKDIGEVIIGNIASSGYLHATVDDIAEMAG---VTPGEVESVLHAVQRFDPVGVSARTAQECLLVQIEMLGYTRD--KVLVELVRDHLEDLEKRRYKPLLRKFRLTMEDLKEYLDLIQTLDPMPGASYGGGDPQFVSPDVYVYKYDDDFIIMLNEDGLPHLQLSTMYERSAAAAASAGEREYFQEKMRSASWLIKSLYQRQRTLYKVVESIVKYQRGFFEDGVSRLKPLILKDIADDIGMHESTVSRITTSKYVATPHGIMELKFFFNSALELDDGSQVGSESVKALIKKLIADEDPREPLSDERIGEILKDqkVNIARRTVAKYRTAMDIPSSSKRKELF
24 UniRef50_B0K876 RNA polymerase, sigma 54 su... 510 1e-143 1 35.7% 1:476 3:454 MEFDLKLQQTQKLIMTPELKQAIEILQLNSLELNALIEQELETNPLLEKEEVIEEDIYESNDFTELAKYIRETEERMYYDDSDDEEIEEVNY------------------ENFVSTKPSLTDHLLFQLHITPVSPKIQKICEYIIFSLSPSGYLREDIKDIAEIL---ECTEEEVLEGLSIVQSFDPPGIAARNLQECLKLQLLA---QDSYKGIVKELVDYHLEEIAEGKYSYLAKLYNISLKEVQQAVDFIKKLNPKPGSSFSStdVRYIVPDVEVIKREGEYFVIVNDSVTPKLKINNYYHSILNSH-DEEAKKYINSKLQSAMWLIKSLESRKETLYKVVKAIVELQRDFLDKGINYLKPMTQKQIADIVGIHESTVSRAINGKYVATPRGLFELKFFFQSGISNKNGNEFSAETIKNLIKKLIEEEDPTNPLSDQKIADILKEKNINISRRTVAKYREECNIPSTIKRRRY-
25 UniRef50_D1RJS1 RNA polymerase sigma-54 fac... 507 1e-142 1 49.4% 1:474 1:461 MKPSLQLSISQHLTLTPQLQQAIRILQLSTIDLQQEIQLVLESNPLLEATPNEDKEE-------------IAIDETRQQENDQSDFQWSELYQSSDKRTSFDDVD--YNFDNLHCTTTNLKDHLKWQLNLSPMSDIDRAIATAIIDAMNSDGFLSMGITELHASLTSEelDLDEIEAVRHRLQLFDPVGCACINLAETLLIQLEQLPQDTEHLALAKKIITKDIELLGQHNYRQLMKNHQITEKTIDSVLKIIQKLNPKPGNLIHEDITEYIIPDLTVKKINNQWQVHLNQSVLPHLSINNQYASLIQRADNSADNLFLKNNLQEARWFLKSIQSRQETLLKVATCIMQYQQGFLEYGEEAMKPLILNDIAIALEMHESTISRVTTQKFIHTPRGVFELKYFFSSHISTNVGEECSSTAIRAVIKKLIAAENRKKPLSDSKITQLLEKQGIQVARRTVAKYREAMGIAPSNERK---
26 UniRef50_Q0ATI6 RNA polymerase, sigma 54 su... 505 1e-141 1 37.7% 1:477 4:500 LMQKLDMRQGQSLVMTPQLQQAIKLLQLSNIELAEFVEGELERNPLLERDDSGESAESqeEGQGEPRELELAAPSADANDSIDADVdgDDSKSdhTSGGSRGPASEDYDAIANSSRDISLADHLHEQLSMATGDPVDRLIGAHLIDLADDDGYMRSDLDEISAQLG---VERARVEAVLDLTQTFDPAGVMARDLPECLALQLKDKDRLDP----AMATLLDNLERLAKHDYVALKSLCGVDSEDLDEMISEIRALTPKPGHAFGSDSTRAVEPDVFIRQsdGSWQVELNSETLPRVLVNNSYFNEISaaKSETDKTFITECSQNASWLVKSLDQRARTILKVASEIVRQQDMFLAHGVAYLRPLNLKTVADAIGMHESTVSRVTSNKYVATARGMFELKYFFTSAisAGGGEAHSAEAVRHRIKLMIGQESADGVLSDDSLVEQLRDEGIEIARRTVAKYREALNIPSSVQRRRML
27 UniRef50_C6WT04 RNA polymerase, sigma 54 su... 505 1e-141 1 45.0% 1:476 1:525 MKQGLQLKFSQNLSLTPQLQQAIRLLQLSTLELNQEIDVLMQTNPLLERGDDTEDepEFENFDAEYAESASEFNGAESAnsAEFNDEFDEFSNGSRWDENTMPADDDSDFKPQETLQTSLREHLLSQLKLMPLSERDQSLALMLVDSINDDGYLEQSLEEIAELMPEeeIDAIELQTALRHVQHLDPPGVGARSLSECLLLQLAVLPKSTPHLAMADLVAKHHLQVLASRDFVKLRKELGCDEATLKQVQQLITSLNPRPGSAFShgSEHYIQHEVIVKKVKGIWIASLNDSVIPKLKINQLYAGILKRNRDS-SSQYLQSQMQEAKWMIKNIQQRFSTILRVSQAIVDRQRNFLEYGEVAMRPLVLREIADELDLHESTISRVTTNKYMLTPRGIFELKYFFGSSVATDAGGTCSATAIRALIKQLVDQENPRKPYSDNQITDLLAKQGIVVARRTIAKYRESMNIAPASLRKSL-
28 UniRef50_A6TU36 RNA polymerase, sigma 54 su... 504 1e-141 1 34.7% 1:476 3:462 MGYNLQLEQSQKLIMTPQLKQAIQILQFPTIELDQYIQDQIEKNPVLELSNEKEPGRELDKG----------------IEDKKKEVDWKEYIKDMQNHGYshSDENEFNYENIISSDVNLQEHLLFQFHVTLLDREYNEIGEYIICNLDENGYLTLSIEEIAKDL---RVGINLVEDVLHIIQTFEPPGVAARNLTECLTLQLNSLAIED---QRVYDIVEKYLELMASNKYPVIAKKMKISVNKVQEICDFIRTLEPKPGREFATNESSYVIPDVVVKKIDDEYVIIVNDYSAPRLTIRQDYQKLmnECENSETVKFLNDKFNAAAWLIKSIEQRRNTIYRVVESIMSKQRSFFEHGKKHLRPMTLKEIAEEIDVHESTVSRATNGKYVETPIGIFELKYFFTsvGGDVGVEGTSSKTIKAFISEIIQKENPKKPLSDDKIVKELATRAMHLSRRTVAKYRDDLRIPSSSKRKRY-
29 UniRef50_A3VRA5 DNA-directed RNA polymerase... 499 1e-140 1 37.7% 2:476 4:475 -SPKLEIRQGQQLIMTPQLQQAIKLLQLTNLELAEFVEEQLEENPFLERDERAddREPSASRDEEMARATDHFEAPTQADDTPGEAGAGDW---SGVSGRSGIADGEFDAVQNAEVQIGLHDHLTHQLHLSTTDEVTLLVGAHLIDLIDDGGYLREETEVIALRLG---IDRPFVEKTLSLIQTFDPSGVGARSLQECLRLQLRDLGELDERISLFI----DNLDLLAAHKLPALRRAVRINEEELKALIATIRKLDPKPGLAFGGEAVQLVIPDVHVTesDGGWKVELNAETLPKVIANERYFSRLSSADnaETRSFLNEHMATANWLVKSLDQRARTILRVATEIVKYQDEFLVRGIRYLRPLNLKTIAEKIEMHESTVSRVTSNKYISTPRGTFEMKYFFTPSISSKDGdaYSAESVRHRIRELIEAEDPTNPLSDDRLVTLLAGEDFDIARRTVAKYREALGLPSSVKRRRL-
30 UniRef50_C0G3T2 RNA polymerase sigma-54 fac... 499 1e-139 1 36.4% 1:475 24:512 LSPKLDIRQSQSLVMTPQLMQSIKLLQMTHIELDQFLDMEIEKNPLLDRIEAdgEPASGADDPTESADNDDWFQTEGAGAAENLSATFDNSLENIFPDDLGSSQEQwyDIDQVTAGRLSLSDYVAEQIVLGFSKAADRFIATALADALDESGYLRIDIVGLAHNLG---IETAEIGRILGVLQGFDPPGLFARDLRECLAIQLRLKDRFDP----AMEALIANLDLLARRDFATLQKICGVDQADLIDMLAEIRALDPKPGARFEVSVADTIVPDVLvsARDGGWAIELNPATMPRLIVNNEYYAEVSGSVKTEEKAFLTDCMQTAGWLVRSLDQRARTILKVAQEIVRQQDGFLRHGVAHLKPLNLRMVADAVGMHESTISRVTANKFMATPRGVFELRYFFTASlsSEGGEAHSSESVRHRIRQMIEAEKPDEVLSDDAIVDALKKDGVDIARRTVAKYREAMNIASSVQRRR--
31 UniRef50_C0GFB1 RNA polymerase, sigma 54 su... 498 1e-139 1 37.8% 1:476 3:464 MSYHLKLEQTQKLVMTPELQQAITLLQYSALELQTYVQNQLLENPVLEIDESEDTEKKTDESVEEPVQEKDS-------------IDWEEYLKDEGMEPMtrQNEDAPGFDYYLSNEPTLQEHLLFQLGLCSLTPTEKHIGEFIIGNLDQHGYLKGDFKELAMLIG---AEPREILGVLEVIQKFDPVGVGARDLQECLLLQIQEHNSPHP---LAKPIVRTHLADVADNKIKKIASELRAGATDVQAAVDFIRTLDPKPGRLAGdgDVRYVVPDVVVEKVDGEYVVIVNEQNIPRLAVNPYYRSLLGKDSESVTSTFIKTRLDSALWLLKSIEQRRITVYRVTECITRIQRDFFDQGIKHLRPMTLRQIADEIGVHESTVSRATSNKFVQTPRGLFPLKFFFASGVDDYHGTAVSSESIKCHLKELIEAENVQRPLSDQKLMELLSKRGIVVSRRTVAKYREEMSIPSSNKRKRL-
32 UniRef50_Q0ADR2 RNA polymerase, sigma 54 su... 498 1e-139 1 40.7% 1:474 1:485 MKPTLQLKLSTGLTLTPQLKQSIQLLQLSALELNQEISRIVQENPLLELDEdeTEGQDSSLVSSDLSTTAEANESHDIRENTEISNDwdSLYSDQgdTRRQDDEEYDQDYSRLVSKPASLREHLLMQISLRQRCERKKKITALLVDSLDDNGYFTQDLEELAKLLPVeeIDITDLKSALAYIQQLDPPGVGARNLRECLSIQLSALPDATPLRTEALKLVNEHLESVAAKNFPLLRKVLGCDETCLQSVYQLITQLNPKPGDDFNATTARYVIPDVIVTKSAKGWVAQLNSDSVPRVRVNHLYADILKQNRNEAIRP-LMEQLKEARWLIRNIDQRMVTILRASQAIIDCQQAFLEHGETAVRPLVMREIAEVLGLHESTISRITTQKYMRTPHGIFELKYFFGSHIPAETGEAHSAIAIRGLIKQLIQNEDRKKPLNDSQVSQILAQQGIVVARRTVAKYREFMHIPPTNLRK---
33 UniRef50_B2UH35 RNA polymerase, sigma 54 su... 498 1e-139 1 36.8% 2:476 3:500 -KAALEMRAKQHLALTPRLQQSVKLLQLSATEFAQEMQEALASNPFLEEVEQEAGAQPDATRANDLPGPAdtSAIETDPALATADEFPADFGTYYSHGGAHHGDGEDSDIGEWVHATPSLREHLHQELRSYRLSQRDCLLGQTVIEALDDDGYLRQLLSELIPLApePPPTEKEMQIALALVQSLDPPGVAARDLSECLRLQIEARPADTeiQEVAHDIVRSHLPRLAKREFTQMRRALGCTEDELRDACALIRMLDPRPGLRFSQAHAGYIVPDVIVAKIRGKWIAVTNPAVAPCARINKVYAELFAQTRGYH-RTPLAHQLQEARWLIRNAQQRFATIQRVAEAIVAHQKHFLEYGEVAMKPLVLRDVAEELGLHESTISRATGNKYMATPRGIFEFKYFFSRQLATDTGGACSAASVRALLKEMIEAEDADAPLSDVSLAKMLAEQGVIVARRTVAKYRGLMRIAPAEMRRQV-
34 UniRef50_Q03408 RNA polymerase sigma-54 fac... 496 1e-139 1 38.4% 1:477 3:493 LSHRLELRQGQGLVITPQLQQAIKLLQLSNIELDAFVEAELERNPLLQRDedHEPAVEVEAERDASLTQVDAVADTTAGRELDtdAEHAGGQIDWSRAGGGGSFESDEGYERALTDSPTLAAHLRTQLVQAALSPAHNAIAEILIDAVDEGGYLRLDIVELADRLG---CALALVEETLSVLQGFEPVGVFARDVRECLALQLKDLNRYDP----AMAAMLDHLELLAKRDMAGLRRICGVDDEDLREMIGEIRSLNPRPGAAYHSEPAETLVPDVMVREggGMWHVELNTDTLPRVLVDQRyaRVSKGARSDQEKTFVADCMASANWLVKSLDQRAKTILKVASEIVRQQDGFLAFGVEHLRPLNLKTVADAIGMHESTVSRVTSNKYIATPRGVFELKFFFTSAisSEGGEAHSAASVRHKIKGLVDAEkeADVHSDDRIVEILKAAGVDIARRTVAKYREAMRIPSSVERRRLM
35 UniRef50_A0LK00 RNA polymerase, sigma 54 su... 495 1e-138 1 38.1% 1:475 4:483 LELKQQLKLSQQLIMTPQLQQAIKLLQLSRLELLETIHQELETNPVLEESQEESGEAEEPGAAEAAAEVAAEvqEVEILEKVREDFDWEGYLDEYNTGTptDPNKEWQSYDQRLTVPTSLQDHLVWQIRLSDMSDEEREVAGLIIGNLNRDGYLDASLDEIAAM---GKVSTDMVERVLAVVQLLDPVGVAARDPRECLLIQARSLELEDD---LVVRIVEHYLHFLENRNYPALIRALKRPAPEVKAAVDVILSLDPRPGSRFAEESTEYISPDIYVMKVDGEFVVLLNEDGMPKLKVSSYYRHALTEDAesEAKEYIQGKLRSAAWLIKSIHQRQRTLFKVAHSIVKLQADFFEKGVSHLRPMVLRDVAEDVGMHESTISRVTASKYMHTPHGIFELKYFFNSSINSVLGEAVASESVKERIRQIIREEDLARPFSDQEIVEKLEGENISIARRTVAKYREMLGVLPSNKRKR--
36 UniRef50_P22881 RNA polymerase sigma-54 fac... 495 1e-138 1 37.3% 1:475 3:508 LSASLHLRQSQSLVMTPQLMQSIQLLQMTHLELGQFIAQEVEKNPLLEFQSADegFGSDRPERDETGLTAEAGGAEESVDhtELDADFANVFQdsMPGAGGSNDGEGYDLDDFVAGRKTLRETLIEQVAFAFAAPADRLIAQHLIDQLDEAGYLHAEIAETAARLG---ASAADVTRVLLVLQQFDPPGVFARTLSECLAIQLRLRNRLDP----AMEALVANLELLARRDFASLKKICGVDEEDLIEMLAEIRKLDPKPGTSFETSVTEAIIPDVVVRSadGGWLVELNPDALPRVLVNHDYFAEISRhkNSAEQAFLSECMQNANWLTRSLDQRARTILKVASEIVRQQDAFLVHGVDHLRPLNLRIVADAIKMHESTVSRVTSNKYILTPRGLFELKYFFTVSisAENGDAHSAESVRHRIRTMISQESADAVLSDDDIVDILKRAGVDIARRTVAKYREAMNIPSSVQRRR--
37 UniRef50_B3Q2R5 RNA polymerase sigma factor... 494 1e-138 1 38.3% 3:475 5:472 --TSLHQRQQQSLVITPQLIASIRLLQLAHTELNQFVEQEIEKNPFLDLASNDGGAspTAADDPNISAREDHVDGPARTDMPELSSPWKSIRDTGNLSPG-----ERPSLDEFAASTETLHEHVAHQIALTAFTPQERLIAGALADHLDDTGYLQVNLLELAERLNSPEAG---VKRVLEALQLFDPPGIFARSLGECLEIQLRQRDRFDP----AMAALVANLELLARRDFRALKRRCRVDEDDLLDMLNEIRALDPKPGNQFQSARSESIIPDVFVLPsgGGWHVELNREILPKVLINQTYFAQVTraQSSKDQSFLNECFQSASWLVRSLDQRATTILKVATEIVRHQDVFLEDGIAHLRPLNLKTIADAIDMHESTVSRVTSNKYILTPRGVFELKYFFTVAisSQGGDAHSAEAVRHQIRALIAAETLHDVLSDDGIVAKLKETGVDIARRTVAKYREAMNIPSSAQRRR--
38 UniRef50_C5V3W1 RNA polymerase, sigma 54 su... 492 1e-137 1 41.2% 1:476 1:465 MKASLQLRMSQQLTLTPQLQQSIRLLQLSTLDMQQEIDRMLDENPMLELGDESVYHALSGEPVREDHAQVDNAESERGEAEPFE-----------WNAETRGADDESDAYPEQAALQASMREYLHSQLSVSQLDSRDRLVIGMLIDALDENGYMLQDLAELAGLLPAeeLTLDDLETALVQLQYLDRPGLGARTLSECLALQLKALPEQTPGRDLAMSLVNGNLDLLAAHDFSKIKKLLRCSDASLRVAQELIVSLNPKPGCEFDRSVADYVVPDVIVEQHKGKWRARLNADAMPRLRVNQMYANILQQ-RDDKSGAPLVSQLQEASWLIKSLRQRFDTILRVAQAIVDRQGAFLEHGDIAMRPLVLREIADVLEMHESTVSRGTTQKFMRTPRGIYEFKYFFGSGLVTESGGVCSSAAIRELIKQLVGGEDTSKPLTDGRMSEILAQQGIVVARRTIAKYREALHILPVNLRKSL-
39 UniRef50_Q2W084 DNA-directed RNA polymerase... 490 1e-137 1 38.7% 1:475 3:497 IGPRLDIRQTQSLVMTPQLQQAIKLLQLSNFELTAFIDQELERNPLLEREEGERGPEPTEPKVDSTDLAVLDSAPAEApaEDGMDVDYDNTFNNDSASDAVQDEsgESNLEQMVAGEISLRDHLAAQVSMDIPDAGDRLIALHLIEMLDEAGYLIGDLDELAERLG---CPTERVLVVLKRVQGFDPVGVFARSLKECLGLQLAEKNRLDP----AMQALLDNLELLARRDLPGLMKACGVDAEDMAEMIGEIKALDPKPALAFDHIVAQPVTPDVLMRrqDGAWVVELNSDTLPRVLVnrYYSKIAGAARSKDDKTYISERFQSANWLVKSLHQRATTILKVATEIVRQQDAFFRLGVQHLRPLVLRDIATAISMHESTVSRVTSNKYMATPRGIYELKYFFTQAIGSADGGdhSAESVRHRIKALIDAEGKS-VLSDDSIVDALKAEGIDIARRTVAKYREAMNIGSSVQRRR--
40 UniRef50_A9IMC8 RNA polymerase sigma-54 fac... 488 1e-136 1 36.9% 6:476 20:489 -----ELRLHQQTALTPRLQQSVKLLQMSALEFNQEVRQALVENPFLEEDEEAAASAPQAPDGAGADAPVAQAAAATSSGAL-GDEHGPAAYSGDYPSARRANDGAPMDMGLWVGASVSLQERLDQELRTYRLSPRDRLLAQYIVQALDEDGYLRQPLLELAegVFGTPPDESEWRAALRLVQQLDAPGLAARDLQECLALQLQALDGQRPEVALARRIVDQHLDILARHDYEALQNALGCDESSLRQACDTVRSLDPRPGRRYDEAPPAYIVPDVIVRKESGQWRVYCNRGAVPQPRLHRVYADLFRTTRYR-DRGPMAQELQEARWLVRNVEQRYSTIQRVAEAIVRLQHMFFEYGPVALRPLMLREVSAELDIHESTVSRATANKYMATPMGILEFKYFFSRELATDTGGSCSAGAVRALIAELIDNEDPRMPLSDVALASKLAADGIVVARRTVSKYRAQIKRPPADLRRQY-
41 UniRef50_A9HW09 RNA polymerase sigma-54 fac... 488 1e-136 1 42.1% 2:474 9:474 -RPALELRTGQHLTLTPQLQQSIRLLQLSTLDLQAEISQALADNPMLERNDERSEAEVDAPTERedIDAEPAREAETRIDEMP---------------GAGGVYPDDRPDGPDTARSDTLREHLLAQLGLTRAGRRDAALVSLLIDELDENGYLASPLEEILEWLPPeeADLDELRAALCLLQSFDPPGIGARDMAECLVLQLRNPDpdPTVLACARRLCADHLPLLAGGNAARLRDALQCDDATARAAHALIRRLDPRPGRAWTVPAADYAVPDVIVRKTRQGWQAVLNSAAVPRLQVNTLYAQLLGNQR-EASHAGLHAQLQQARWMIRNVEQRFDTILRVAQAIVAHQSAFFSEGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLELKHFFGSGVATDAGDVASATAVQAVIRQMVAGEDRAKPLSDNQITQRLADQGIVIARRTVAKYREALRIAPASLRK---
42 UniRef50_Q0BUA8 RNA polymerase sigma-54 fac... 487 1e-136 1 37.7% 1:475 23:531 IGPRLDLRQSQSLVMTPQLRQAIKLLQFNNMEVAAFIEEELERNPLLERDESTELIQERPAPDQTGPeaDAASSDHMISEAGPLDVDPGSLYDEPGETAssFDNSPFDVISQRLEYRPSLREQLAEQLRLCFASPQDRLIGAHLIAQLDAAGRLTMPPAAIAKALN---CPLPHLENIRTAMRYFDPPGLFCLDLKECLTTQLQAFNRYDP----AMAILLEHLDLLAQRNHRRLMSLCGVDAEDLAGMIDDIKRCNPKPGAGFDSDLPQTIIPDVLMSRRpgEWLIELNPETMPRVLVNMglTRFARRSMSRDDRSFIKEKLNTAHWLVKSLQQRSQTILRVSAEIVRQQQAFFRHGVSHLKPLILRDIAEAVDMHESTISRVTANKYIATPRGTLELKYFFTTAISGADGENFSAEAIRHRIRTLIDQEPASDVLSDDALVTHLKQEGIDIARRTVAKYREALRIPSSVQRKR--
43 UniRef50_C9R8T3 RNA polymerase, sigma 54 su... 487 1e-136 1 35.9% 2:474 4:451 -KADIRLETAQKLAFRPELQQAVAVLQFSTQELWQYVQQQLTEN--------------------PLLELKEEGEGGEPPEEEASEDSWVDYLCDASDLGLSQQEPASSPEPVPVAPGPSLYEHLLQQLAFLPLNSTERAVAEFLAGNLDQDGYLRLPLAEAASLLG---ISEEAVARGLKVLQSLEPPGVGARDLRECLLLQLERSHPED---HLARKLVGEHLEELAEGEWAKLVRKLGVSQEELDRAVERIRQLNPRPGSNFGSNWVEYVVPDIVVQEVEGDYEVLLNESVYPRLVINSTYRDLLRHPqgPEAKTFLQQRLKQALWLIKNLEQRRLTLYRVAVALVEKQRSFFDQGLSGLKPLTLREIAEEIGVHESTVSRAIANKYLQCSRGIFPLRFFFASGVSSSRGQEVAAQAVKWLIKQLIDKEDPAAPLSDQAIARELKRQGIELSRRTVAKYRMEMGIPNAAKRK---
44 UniRef50_A3EWH7 RNA polymerase, sigma 54 su... 486 1e-136 1 34.1% 1:475 2:482 IRQRLEIKLGQKMVMTPQLQQAIHLLMLAKLDLREEILQETQTNPLLELEEEGDWEDSVPESSIDHLPADSENRETVPEEETNPdeDMDDSGLYQEERSIREDPESDFSYEKVLAAPTTLEDHLIWQISFREMSPVEKELAHFLIGNINEDGYLAVSEEEIPESL---RTDPEMFPRVLSWIQECDPPGVGARNLRECLMIQARMLHLEKT---VVWSVLESQLDEFMEMKYKGIARALSVSVEDIQEAGKIIRKLEPKPGRPYFRDMAMPISPDVRFYDAggEIRVGLNEEGVPRLRIQSAYKSLLKteKKDKTREYIEEKLRSAMWFMKSIEQRKKTILRVAEAILRHQEDFFRRGPLGLKPLVLKTIAQDLGLHESTISRVTNQKYAETPFGIVELKFFFSGGLPSQSGSEHSSVSVREKIRDMVHGESKSAPLTDQEIMNRLGKEGIVIARRTVAKYRMELDIPPVNKRKQ--
45 UniRef50_Q6FED3 RNA polymerase sigma-54 fac... 486 1e-136 1 47.2% 1:477 1:482 MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKIEDEGTAEstHLENKESRDLTQDLNADHLPNDLPVDTDWDDVYTHQSTALASPEYEERED---NRQAEHTLKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEelSEAGLEEEIEADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVLDVFTPLRNEALSLL-KYYELLVSNDLNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDYQVPDVVVTKKDQSWQVQLNPDIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIKSIDERHKTLLKVATCIVEHQRNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRGLFELKYFFSSHVGTTSGGECSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGIDVARRTVAKYRESLHIPSSSERKVLI
46 UniRef50_UPI0001C42E0E RNA polymerase sigma factor... 486 1e-136 1 32.8% 1:476 1:445 MQFGLFQQQTTTLIMTQQLRQAINLLQYSTTDLSAFIHEQALENPLIDLQDQASMQAGSESSYIGA--------------------------PAPRSGSTRKSEDEASPIDYALVDHKSLSEHLVSQAGEIALSEELERQLHYFIFSLREDGYFCRPFEEVCSDLA---ISTEEGEDVLRILQSFEPAGVGARSLSECLLLQLKHLSNKAP---LAEIIVSRHMEDLASKKWKTLATELDVTMSDIQDVYDLIQTLDPRPGTQYSGEPTNYLIPDLSITWKNGELVVQLIDDSLPPIRLNRDYEQLLHRSNHAEATEYAKQKYQQIQWLLKSIEQRQQTIKKVAEAIVRHQRDFFESKSGVLKPLTLKDIAEEIDMHESTVSRATTHKYAQTPRGLYELKAFFTSSVKNGFGESTSSQSIKELIKELIAGESKQKPLSDQKIVTWLeeKGITVSRRAIAKYRDELGIPSSSKRKRY-
47 UniRef50_B9XGP4 RNA polymerase, sigma 54 su... 486 1e-135 1 34.5% 1:476 1:498 MAQGLQlrLTQSLVLSPQMQQSLALLQAPTLELKALVETELQQNPVLEEvdQSERAKTDDGEQVEAVDPTEPPADveFEKLSQLDQEWRDHysTNAPTRQSADEEEKRQffDSLVAGTSLQEVLLEQVRESGLPEDLRPIGEMLIGNIDDYGYLKANIDELSFSTNIPAV---KIEEVLKVIQTFDPPGVGARDLRECLLLQLERAGDQESIE---YKIIRDYMDALGKRRIPEIARGLGLEVDEVQEAIASIGRLEPRPGRAFLADNHQYILPEVFVNKVGDDFVVTTNNEQIPHLRISNTYKDLMAQSGNseVINYIREKIRAGKFLIKSLHQRQQTILNIAIEIVKRQREFMEKGVSLLKPMTMVQVAEAVGVHETTVSRAVSSKYMQTPQGIFEMKYFFTAGIQTASGEGLSNTSVKDMIAEMFKKEDTTKPLSDQEIVKMLQEKGIVIARRTVAKYRSELNILPSNLRKVY-
48 UniRef50_P33984 RNA polymerase sigma-54 fac... 484 1e-135 1 37.9% 1:475 3:501 MSPKMEFRQSQSLVMTPQLMQAIKLLQLSNLELVAYVEAELERNPLLERASEPESPEHDPPNPQEEAPTPPDSGAPVSGdeTRLDTDLGNVFPDDAPAErgGDRGEDYNPEAFLAAETTLADHLEAQLSVAEPDPARRLIGLNLIGLIDETGYFSGDLDAVAEQLG---ATHDQVADVLRVIQSFEPSGVGARSLSECLALQLRDKDRCDP----AMQALLDNLELLARHDRNALKRICGVDAEDLADMIGEIRRLDPKPGLAYGGGVVHPLVPDVFVResDGSWIVELNSETLPRVLVNQTyaTVAKAARSAEEKTFLADCLQSASWLTRSLDQRARTILKVASEIVRQQDAFLVHGVRHLRPLNLRTVADAIGMHESTVSRVTSNKYISTPRGVLEMkfFSSSIASSGGGEAHAAEAVRHRIKSLIEAESADDVLSDDTLVQKLKDDGIDIARRTVAKYRESMNIPSSVQRRR--
49 UniRef50_Q31GC3 Sigma-54 (RpoN) n=2 Tax=Bac... 484 1e-135 1 42.4% 1:476 3:496 LMPGLQINIGQQLKLTPQLQQSIKILQYSALEVQQTISTTLETNFMLELDEdsEYEEEPLNESSETETELDIEASDTLSDDLQADYEWEEVYIDssNSIKSNNNDDYTAPENYTSAEVTLSEKLYWQADIYSWPDSQDVIASYIIDDIDDEGYLKTPLEDIMASLQKNevSLADIEQVLSVIQQFEPTGVGARDLSEGLILQLKALP-QNPYVVTAIKIIEENFDLLSVRDYKRIKKIYLLNDEELMEVIHVIQALSPRPGREYSSTQGEIVIPDLKLYRSKDGFIVELNQDAFPRLTINSAYIDMAGSLgdSSDSKQIKEQLIEAKGLIKSIQSRGETLLRVGKYIIEKQARFFEEGEQAMQPMVLRDVAEALELHESTISRATNQKYMQTPRGTFELKYFFSTGVSQYGSDDQSAIAIKSHIKQLIEGEDPNKPLSDNKLMALLEEKEINVARRTIAKYREALHIPSSSERKKL-
50 UniRef50_B2A6Z6 RNA polymerase, sigma 54 su... 484 1e-135 1 30.5% 1:476 3:479 LGFDLNLEQKQQLVITPELRKAIKLLQLSSIELDNYIEKELVENPMLEISSTEESESGDDNGKEDSVEKLENSQESAQSED-RFDIDWQKYFEDSsnLPKENYDEGKDGFETFTPSTISLTEHLYFQLSlsDQEEHIKPLAEFLIGNLDANGYLNGTLQEIAEFL---DVEEKELEKALELVQSLDPPGVGARSLKECLLLQVET---DSHSPDSAYELIENFLSEIAENRLDKIAKELKLPIKEVQEIVDYIRSLTPKPASPFSEEgpSYITPDIVIKRVEDEYEIILNDSMSPRLKINSKYRQLLKTEKGSGVAKFLNSRLDSAMWLIKSIEQRRITLYNIMQKLVEMQRPFLDNGVRYLKPLTLKEVADEIDVHESTVSRATANKYVQTPQGVYPLRFFFSSKLDNNQDDYNSSTSIKQKIKELVEEEDKKKPLSDQKIAEILQESSINISRRTVAKYRKELNLPSSSKRKRY-
51 UniRef50_UPI00016A2E41 RNA polymerase factor sigma... 483 1e-135 1 36.8% 1:475 1:476 MSVTLALQMRQHLALTPRLQQSLRLLQMSSLEFQQELRLALDRNPFLEDVRTDDDDGAAEPSSAAEAADASTPETGALDGAHPPANEIAYTAEPAARGPGRADDDASDAagEWSAAEPSLHAYLHDALRLYPLNRRDRAAARLIIDALDDDGYLRQALPELVLAapALLLNERDLAVALRLVQALDRPGIAARTLAECLLLQLDALPAGTPALAQAKAIARDHLERLAHRETAELQRRLGCDAPTLHAACALVRGLDPRPGDHYGSTRGDYVVPDVIVREVRGEWIVTINPAVLPRARLHQRYAELFARASGERDSP-LGQQLQEARWLIRNAQKRFDTIQRVGACIVARQRDFFRYGEIALKPLVLRDIADELDLHESTVSRATGNKYMATPYGTFEFKHFFPRRLEAAGNGACSAAAAKVLIRDMIAAEQHAEPLSDVALAQRLAGRGILLARRTVTKYRQAMKIPPAGLRRR--
52 UniRef50_D0STY4 RNA polymerase sigma-54 fac... 483 1e-135 1 47.0% 1:477 1:483 MRLSVGIKIANSLSLTPQLQQAIRLLQLSSLELEQEVQLQLDSNPLLEKVEEQieSLSTIESNNENHDLTNELNADHLPDDLPVDTDWDDVYTHQPTSLGAAEFEERED---NRQGHQSLQEYMLEQINLLNFSQVDKLIAYCIVDSLDDKGFLDAELSEITASvsEEEIEDDEVAVVLKHIQRLDPVGVGSRSLAECLLVQLDNLPTSTSCRNDAIKLLQ-HYELLITNELPKLIKQTGLNPEQLRCAVDLLKTLKPHPGLEFENKESDYQVPDVVVMKKNNCWQVNLNSDVLPKLRVNSFYAKMIRRADQSDDNQYLRNQMLEAKNFIKSIDERHKTLLKVATCIVEHQKMFLEIGAEGMKPLVLRDIAEEVELHESTVSRVTTNKYMLTPRGLFELKYFFSSHVGTTSGGEASSTAIRAKIKKLISEENARKPLSDNAIANMLKDEGIDVARRTVAKYRESLHIPSSSERKVLI
53 UniRef50_C1A8U9 RNA polymerase sigma factor... 480 1e-134 1 32.6% 1:476 1:497 MRTGLQQtlRQELKVNPRLYQAMDLLYMPLLDLQQHLKQELLTNPFLELVEPEDEEEDSSdpEPQDMAEPEAPAEPEPEKSGDDEVDWEAVLLDGFETGGQREEHEQQEWHEPVtaGRDLADHLTEQLSLLALSPRQAFMAEEFVGNINDDGYLACTLEEIRDGANqpEFSEEEIEALLLIIQELDPPGVGARNLRECLLLQLRADGQADS---LAGRLVAEAFEELIARRWGEVAKRFGISPQAVQAAADEIAKLDPKPGLRFSAGSDNYIIPDLVVEKIDGYYHIFLNDGNLPRLKISRIYTDIARDKkdTESKDFIATKLNSANWMIQAIEQRRQTMLKVMHYIVDRQREFFERGVQGLRPLTLREVAEAVGMHESTVSRVTNEKFVQTPRGVLPLKFFFSSGLSTSDGDDVSARGIKDQIEKLVSGEDPRNPLTDQAIVEILQETGVQIARRTVAKYRDQLGVLPARMRKRV-
54 UniRef50_Q1Q3A8 Strongly similar to RNA pol... 480 1e-134 1 29.4% 1:476 3:485 MQSSLLPQLQQKMKLSPQIIQSIEILQLPLLALAERIQQELLDNPVLEEVVEQPKEDSPVSEDSSIAGEndDAKKAEVDRHNEMAEDWNEYYSKTTIRKSALSDERDQKQenTATKPMSLHDYLLGQLSLMEVPEHLYEACENIIYSVDTSGYLSGSLEEIVSSF-EKPVSLADAEKALEIVQTLEPPGIGARNLQECLLLQL---DNRDPNYHITKDLLQNYLLEIESRKYPAIAKKTGYSLETIKKQVEFIRTLNPKPGSVFNDETIPYVVPEVKVEQIDGEYEVFLIdaNIPHLHISSFYRKSLSESndSSTRQYIQKKIESAKWLVDAIEQRRSTLYKVACKIVSMQKGFLDEGVHRLRTLKMQDVADIVGVHVSTVSRAIAHKYIQTPQGVFEMKFFFTGGFQNADGNMESWESIRQKLIEIVAKEDKSNPLSDEEVADKLGASGVDIARRTVTKYRRILKIPSSRQRKAY-
55 UniRef50_A1K6F2 RNA polymerase sigma-54 fac... 477 1e-133 1 40.1% 1:474 1:475 MSLGMELRLRQHLAITPQIQQALRLLQLSSQEFTQEVEQAVTSNPFLEEDPDAPPPGPAAAMPLAPAASSSEpeTVDGGDGEGSDAPVSPALHEIGRSGGGGGGDEEHDWTEWTEAPISLRDNLRNQLLLSPMSDRDRTLAHMVIDELTDAGYLETPLEELADLipEEEVDVHELSAALKLVQQLDPPGIAARSLQECLLLQLQALPASTPNLSLALELVGQHFELLARREFTRLQQLLSCNENALHGARALIRTLDPRPGRCFAPDNTRYVVPDIIVTNQRGRWVATLNPAVQPQVRINRAYAEIAASRSGCGAS--FSRLLQEARWLLRNVEQRFNTIQRVADAIVARQRVFFSYGEAAMKPMALKDIATELGLHESTVCRVTNGKYMATPRGLFEFKYFFSRQLATDDGGSCSATAIRALLKELIAAEDPQTPLSDAQLARMLAEQGLRLARRTVTKYRTLMRVPSVELRR---
56 UniRef50_D0MG37 RNA polymerase, sigma 54 su... 475 1e-132 1 35.2% 3:477 2:509 --LKLKQEQKLQQKLSPQQIQYIKLLQLPTLALEQRIKAELESNpaLDETPETAEAEATSETTETEAETVEEEASTEIEEEIDWEELFNNVDDLYGYKArdRTDEDEERRELPLPARPSMIEHLREQLVLLDLNETERLIAEQIIGSIDEDGYLRRPLESIVDDLMFThvTEEDVERVLKQIQRLDPVGIAARDLRECLIVQLEAMPEDTPGREVALRMLREAFKDFAMKHFEALQRKLGVSEAELKEAYDLIQHLNPKPGEGGDVAPQqyIVPDFTVTYQDGEFIITLNSRNAPQLRISRRYRQMLEQMadEQTRAFLKNKLESARWFINSINQRRQTMLKVMKAIVELQEDFFKYGEGHLKPMILKDVADRIGMDISTVSRVVNGKYVQTDFGVYPLKYFFSEGLATESGEEVSNREVKALIQRMIEQEDKRNPLSDQKIAELLAKQGFKIARRTVTKYREQLGIPVARLRREIV
57 UniRef50_A6CFS8 RNA polymerase subunit sigm... 475 1e-132 1 31.3% 1:476 3:496 LNISQQMKLGQQMKLAPRMIQSMEILQLPLQALEERIDQELAENVCLERISDNENTPETESeeKEMVAGSEQNNESDFERLLEMAEQWPEDNVTSATKPSSNRVSEddAVANITERQQTINEYLIEQFHYFSCSPEVKEFGEYLIQNLDHNGRLQSSLPEIVQVYGQ-KITQEEAETALSLIQKCDPPGVGARDLQECLLLQLK---PDAPYRDVLVTLITAHLDDLGQNRLPVIQRKTGYSIDMIKNAMSYLRYLDPFPGRGFESEPVLKVTPDVFVKLddGKYVVELENEYTPPLRISRGYAQMLRNKADDQTKEYIKKKIDAAKWLIEAIEQRHSTLKRVAQAIVDFQTEFLDNGPEFIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKLKEIIDGEDKNKPLSDDALVDALSKEGYNLARRTVTKYRKAMNIPSSRQRREY-
58 UniRef50_D2L2L2 RNA polymerase, sigma 54 su... 475 1e-132 1 37.7% 1:477 3:478 LELRQQLKLSQQLVMTPQLQQAIKLLQLSRLELLESVQQELLE-NPLLEESIEEDRQPERTMAEDNLGPTGNSSDAAMEKELLKNAEWDDYLGDFASTGRQSQSRESEMPEerLASKPSLEGHLGWQMRLSNFTAKELEIGESIVGSLNSSGYLRASLEELAQMAG---ASVPEVETVLHRLQRFDPVGVAARTPSECLLTQIEVYGYEDTIL---IELVRDHLEDLEKKRYKPLAKKFHITMEKLKEYLELIQTLNPMPGASYGSGDPIFVSPDAFVYKYGGEFVIILNEEGMPRLNVNTTYMAEI-NPKNDKDKDYLQDKMRSAMWLMKSLYQRQRTLYKVLESIVKFQREFFEEGVTRLRPLILKDVADDISMHESTVSRITSNKYVATPHGIFELKFFFNSSLDLDDGGTVGSESVKAMIKRIISGENAKKPISDEAIADMLKDeqINIARRTVAKYRTAMGIESSSKRKEIF
59 UniRef50_C0Z6M1 RNA polymerase sigma-54 fac... 473 1e-132 1 35.9% 1:476 1:455 MGLGLFQEQTLKLVMTPELRQAITILQYSAIDLISYLQDQANENPVFDLEVAGEVASAKAEKPAPEIDWKEIVGNRATGE-----------------YGSSKNESTYNPLDYVQQGAETLYEHLERQLGYVkfSSLQKQIALFLIGNLDEKGYLEITLEEASERLGAEML---EIEDVLSVLQHFDPVGVASRSLEECLLLQLEHLALDD---EKIVQVVRNHLQDLADNRYQRIADKIGCTPQEVQTIADLIRTLNPRPGAAFSSVETRYVIPDVTVEKVGNDYVVLVNDVAAPRLKINSFYEKMLSQQKsdEAKQFIHDKLNAAMWLAKSLEQRRLTLMRVTQAILDMQREFFDRGIHYLKPMTQKEIAERVGLHESTISRATSNKYVQTPRGIFELKYFFTSALSTSSGEATSSESVKRRIKALIEQEDRKAPLSDQKLGEMLLTEGIEISRRTVAKYREEMLIPSSAKRKRF-
60 UniRef50_B6FY84 Putative uncharacterized pr... 471 1e-131 1 32.2% 2:476 4:451 -KNTLELNQSQKLILTTQLKQSLAILNMSRLEVEEEIRKESESNPLLEAEKNEEGIDW-----EKYIKHMESINIRQDKNDAP------------------YSSENAVDFENMIRSTSNLYDYLIDELKYFKLTFEEKRICKYIIDSLDEDGYLRINDKEIYDAL---RVDASLFRRCLDIVQQLDPPGIGARNISECLILQLERMGISN---NIVENIIMNDLELIGRNKLKDIAKKYKISIEKCKEAIEIIRHLDPKPGRACSNDKCVYVQPDVIVDKIDGKYIVHTNEKDVYNIKINDFYRNMMTDKddKEAKEFIKDRLNSAATLIKNIESRKSTILRIAEAIIDEQQEFIQKGEKYIKPMKMKDIADKLEIHESTVSRGVNGKYMLTPFGLYEFKFFFNAALETdsSDGASSAGIKRDIKDIIDGENKKKPLSDDAISKMLKEKGVSVARRTVAKYREELGIPSSSRRKEF-
61 UniRef50_A9GI22 RNA polymerase sigma-54 fac... 471 1e-131 1 36.1% 1:477 3:506 MEMKLQFKLSQQLVMTPQLVQAIRLLQLSRLELVDEIRKELDGNPVLADDMTDPKARDGDKGDQRGRNADLPTEQreNGERFDRDTdwEQFLENraMPAHRGGFEELPPIDQNLTKPSNLRDHLLWQLQMSDFVENERQFALLVIGNLDEKGYLDlpDLSLVDLAREAELHPEDAEEVLSMIQRFDPVGVAARDLSECLRVQAEVLGFDD----IEMAIIKDHLHNVERRNFPAIAKALKIPLEDVYDAVQEIQKLESVPARNFAeeKTIAITPDVYVIKDGTQFVVTDNDKGLQRLYINENLAQRM--LRDPKAKEFISEKLRSAQWLIRAIEQRRRTIIKVTECIVEKQREFLERGVGYLKPMILRDVAESVGMHESTISRVTSNKYVHTPQGLFELKYFFNSSIHRVADEDIASESVKQAIKKIIVAEDKSNPYSDQAIVKILEedGIKIARRTVAKYREMLGILSSSKRKKMF
62 UniRef50_Q3SF03 RNA polymease sigma-54 fact... 470 1e-131 1 34.2% 2:474 3:473 -RPALALEPRQTQTLTPRLQQAVRLLQLSTFDFALELQELVSSNPFLELEDGEFADEDAAAPDTATTAADTPPAADGAQAEDYAETAYEERLGDGGEAPGRYSEANADAID-FACAPVTLRQHVHSQLNMLDLPPREHFLAWIIAEALDDDGYLRVELDALRAMAGLEpvDAREMLAALTRVQSLDPAGLAARDVPECLTLQLRRRPP-SPQRELALRIVRDELKLLQQRDLQRIAQRVGSTPAEVEAVCAYIRRLEPRPGACFGHHVAAAIRPDVIVRKIRGQWTALLNSSAVPRVSLNRTYAELFQRHREPHHGD-LAGHLREARWAVQNMEQRFSTILRVAQALVDRQQHFFEHGTLAMQPLGLKDIADELGLHESTVSRATCNKFMVTPLGVFELKYFFSRALNTEQGSQCSTTAIREAIRKMILSEDARSPHSDADIARILMQQGLRVARRTVTKYRQMMAIPNVDMRR---
63 UniRef50_C4XU56 RNA polymerase sigma factor... 469 1e-131 1 37.7% 1:477 3:476 LELRQQLKLSQQLVMTPQLQQAIKLLQLSRLELLESVQQELLE---NPLLEESVEEDRQPERVMVEDNNGPTGADAAMEKELLKNAEWDDYLGDFASTSKQSLSRDLEVPEerLASKPSLDGHLGWQMHLSNFTAKEVEIGETIVGSLNSSGYLRATVEEIA---GMANADPAHVEKVLHRLQRFDPVGVAARTPSECLLIQIEVYGYDDPIL---IELVREHLEDLEKKRYKPLAKKFHLTMEKLKEYLELIQTLDPMPGASYGSGDPIYVSPDAFVYKYGEDFVILLNEEGMPRLGLNMSYTD-GSLPRNDKDKDYLQDKMRSAMWLMKSLYQRQRTLYKVLESIVKFQRGFFEDGVTKLRPLILKDVADDISMHESTVSRITSNKYVATPHGIFELKFFFNSALELDDGGTVGSESVKAMIKRIISGENDKKPISDEAIADMLKDeqINIARRTVAKYRTAMGIESSSKRKAVF
64 UniRef50_A6G445 Sigma-54 (RpoN) n=1 Tax=Ple... 469 1e-130 1 35.4% 1:477 3:518 LHMRQELRMSQQLVMTPQLQQAIKLLQLSRVELQDLVRNELleEPVSAVEMQDGVDLQGDIGEARAADAPQQEVKADAPN--TDNFDWESYLQHHTLSggVRGDDDLPGLEQTMADEETLVEHLMWQIRLSNWSPLEEDIAEYIVRSITASGHLGLSVPQIAQRL---EVSTLRVEQMLRKVQQLDPLALASRNLAEVLWIQARH-PEHPIGDPLVLTIIAKHLPNLEKRAYQAVARDTGEPLEEVYEATKVIMGLEPRPARQFVSESAQYVTPDVYVHKIGEEYVVTLNDDGLPKLKISNYYRSAmaKGDQAGAKDYITERLRSAQWLIRSIQQRQRTILKVTKSILGFQREFFEKGPQHLRPLILKDVAEDIEMHESTVSRVTTNKYVHTPQGIYELKYFFNAGISRRGGGELASEAVKEKIKKLIEGEDSRKPYSDQKLVELLREEGIDIARRTVAKYREQLNLLSSSKRRKLF
65 UniRef50_C1P7Z1 RNA polymerase, sigma 54 su... 469 1e-130 1 30.3% 1:476 3:443 LQVGLWQKQSMKLAMTQELKQAIEVLQFSSQELASFLEEKAAENPLIELSSANIKLV-------------------------------DSRFSGLSRVKGQKKSQDKNWIEQIPAQTETLPDFLISQLDMKALSNKILKAVQLYARHLDANGYLAISVQEAAKMAA---ISEEDAEKALGILQSLDPAGIGARSLQECLLIQIKR---DPDAPGHAEELISRHFLDFAEKKWRGIAKKLDISLQEIQRVSDYVQTLNPRPGSGFMADRPQYIVPDLLVKNHAGKLELYLVENQVPKLRLNESYASM-NPAGDAGVTRYLKEKTQEYYWIRKSIESRKKTLLKVGAALLEKQRDFFLYGKGHLKPLTMKEISDDIGMHESTVSRAVREKYMETPFGTFPLKTFFTTAlsAGGEEAASSAEVKNEISALISGEDKRKPLSDQAIVTVLNEKGFEISRRTVAKYREQLGIPSSSKRKRY-
66 UniRef50_D2LIV1 RNA polymerase, sigma 54 su... 467 1e-130 1 38.0% 1:476 2:497 LQLRLEQRQTQKIVITPQLRQAIKLLQFSAIELQSYIENEIRDNPLLEAEERADGDApgADADVPAFDARDASPAVETVTDWEPATPGDRAYEGasTNGKAGSPSDDYDPFATLSMAESLTDHLNEQAQLAFPDAQDRFIARYLIDLVDADGYIRSPLEDAAALLSSP---LEDIERVLGVMQTFDPVGVCARDLAECLAIQLREKDRCDPYMER----LLANLDLIAACDMQKLRRVCGVDADDLREMMQELRALNPKPGAAFEHGEVETLVPDVIVRRgdGEWRAELNPSAAPSLAVDryYASLKNRCRSDSERTYLADRQSSANWLVKSLEQRLSTILKVATAMVEEQSAFFDHGVRHLKPLNLRQIAAKIGMHESTVSRVTSNKAIQTPRGIFEMKYFFtiPSASASSEAHSSEAVRDRIKEFILNESPEEVLSDDRIVTMLKADGIDIARRTVAKYRDALRIPSSAARRRL-
67 UniRef50_A5G033 RNA polymerase, sigma 54 su... 466 1e-130 1 35.4% 1:475 3:482 IGPRLDLRHTQSLVMTPQLRQAIQLLQFTNAEVSQFIEDELLKNPLLERVEPEADAALPVPRNDadIGAEHVVDPDPSGASTPLDVDFSNVYDAGGVGDGTgsPERDDWIGQIADRPPGLRESLDQQARLAFADPVRRRIAFALIMALDPAGRLADPPEQIAERLA---VAPDMLEAVRQTMMRFDPTGMFARDLAECLAVQLDERNRLDP----AMRALLANLELLARRDLRSLMEICGVDAEDLRDMIAEIRRLNPKPGAIFDVTPMTPLIPDVLMRPgdGDYFLELNPETMPRVLIRRGFHAQIVARASRETRQFLSERVQSANWLVRALESRAETILRVAGEIVRHQDAFFRHGIGFLRPLTLREIAAALEIHESTVSRVTSNKVIATPRGIFEMKFFFTTALAGANGESHSAEAVRHRISTLIEGEAANRILSDDALARLLQKEGIDIARRTVAKYREALRIPGSAQRKR--
68 UniRef50_A6NQ00 Putative uncharacterized pr... 466 1e-129 1 29.3% 3:476 1:455 --MELSMNLRQTQTLSPQMVQSMEILQMGSQELLEFIEETTQANPVLEVDEKYDRQDEFDLMRR----------KLEWLESTDVQNSW------YHRQDAEEDADPMANYGGVENGEEDLYRYVLSQLGMLSLERDVMAAAVFVVESLNQNGWLDDDVPALAAAFG---CGQSVMERALEAVQSLEPAGVAARNLSECLRLQLLRRGEGN---ALALEIVEHHLDALARSRFGLIAKELGASAEEVREACALIKTLNPKPGTGFarEHLTYINPDIIVVSFPDHFEVLANDYFFPSLHMSGYYQQLMKDTDDQEVKDYLTDKVRQAKWVVRSIEQRRSTLLSCAQCILALQEPFFRQGPGHLSPMSLADVAQRLEVHESTVSRAIRDKYLQCSMGVYPLSYFFSRGlsGDGEEGASPEAAKILLRKLIEEEDKAHPHSDQKLRELMGEQGCTISRRTVAKYRDELGIPSTTGRRQY-
69 UniRef50_A8W0U1 SUF system FeS assembly pro... 465 1e-129 1 31.9% 1:477 1:444 MDYGMYQQQSMKLVMTTELRQAITILQFSAQDLTDYLHEQQLENPLIEISDPPMTEEARRRTAEVDMPEP------------------------GRMPSGKSGDSDVTALDFLREPEEGLRDHLLHQIRMSEAPEAIRHIMNYLALSLDENGYLEHEIDVYAGELGEEPGD---VAKALGELQQLDPPGVGARNLTECLLIQLNGHEARDP---LAEAIVRDHLDQLANKQFQKIAKALDVGVEDVEVVSDFLKTLNPKPGAVFHSTPAEYITPDVHVIKTGNELVVKLADGHLPRMTMNREYEQLL-QSGGSEVASYMKQKQEQFHWIKRSIQQRQETILNVTKAIVRHQEDFFLRGADYLKPLNLKTIAEEIEVHESTVSRATVKKYAQTPKGLFELKYFFRSGFTGEGDD--SADKVKLYLKRLIDEEEKKKPYSDQKIADLLEVKGIQVSRRTVAKYREELSIPSSSKRKRYT
70 UniRef50_C1SGY5 RNA polymerase, sigma 54 su... 464 1e-129 1 30.9% 1:475 6:473 LNLEISGKLSQKLHITPQMKQSLAILQMPLTELLQELNTCLAENPVLEEIEQEPDEEKTEKKEEKEEKDAKDDVQNEDLEKI----DWEELYRDSGEVSYTPSDDEGYDLEKFVSGQENLYGHLMYQLKVTGSSQDILTAGQYIIGSLTDEGYFDLEFSEVAEETG---VDEDTVAKALELIQTFDPAGIGARNLRECIAIQLCQFEVEQVYIDFIAELLENHEKDLIAYRYDEIKNSLSIEDDTFDHMLFLIRKTDPKPGMNYAKDSNHSVTPDVYIVKKDDGYDIILNEDGMPALRMNSYYLSLLRNKedGDTKEYIEEKIKNAIWLIKSLNKRQKAIYKVVKVLTEVQADFLEMGVDFLKPLKLKDIADETGLHESTVSRVTSGKYAMTEQGLFELKSFFVKGLDTDDG-DMSTQKVKSMIRSIVDSEDADKPYSDQKIVELLNGDGIKIARRTVAKYRDELNIPTKSQRKR--
71 UniRef50_A9BWZ4 RNA polymerase, sigma 54 su... 464 1e-129 1 33.5% 2:475 3:518 -SMHLRADIRQSQTLSPRLQLAVRMLQMSSLDFAAVVRSKLEDNPFLEDPQDAQYGeaPEAGLAPDTGMDdpDPADHLPGPATEPADDRDLWLADMHTGARQGVDGEGTAMDLAACETTLAMHLHGQLNVMAMTPRDLCMARAIVESLDDDGYLRTDLQELAGLLALSPadAQEMLIALRLVQSLDPAGVAARSVGECLLLQCPQIG-DARLRQLAQAMVQDHMDALAARDVPRLARALQVPPAQITQALDCIRRLNPRPGWNFGSSHVDYIVPDVIVRRGQNGWNVHLNPAVVPRVRLNRVYEQLFQRHRRSGQNQ-LADHLQDARWTVRNVEQRFSTILDVAQAIVRKQQLFLEFGAMAMKPLVLREIAEEVGVHESTVSRVTNNKYMATPTGVFELKHFFSRPMLSASGNACSATAIRELIGDIIAAESDARPLSDVEIARQLSAQGLVVARRTVTKYRQLLRIEPADRRRR--
72 UniRef50_C6HU23 RNA polymerase, sigma 54 su... 461 1e-128 1 34.3% 1:475 1:485 MKPQLDLRLTQKMVMTPQLQQAINLLMLNRLDLAQEMQEAVLENPVLEIVEGEDEGDWTPGDEGEAPAQteDPEAGEDDRMVDPLSNWDYSVDESLDNEAFQREEreFSYEKVLSQPTTLADHLEWQLSFTDLSPEEREAASYLVGNIDEDGYLALEGEGLPSDL-FPGCDMDRI---LRTIQTLDPPGVGARTLKECLQIQARLLGQEEALPG---RILDRAFDEFLAMDVKAMARKTRATPEEVGTALGFLRALEPKPGRPYYRESPSIVVPDLRFYEDdgEMRVAISEQGLPRLRIQPSYRAMLREakKDELRDYLEEKMRAAQWFLKSIEQRKKTILRVGESLLVHQADFFREGPRGLRPLVLRTIAQELGLHESTISRVTNQKYAETPFGIVELKSFFSGGVPSVGGGSHSATSVRERIRLMVRSESPESPLTDQEIMKKLEEAGIVIARRTIAKYRAELDIPPVSQRKR--
73 UniRef50_B0TGK6 RNA polymerase sigma-54 fac... 459 1e-128 1 34.4% 3:476 5:432 --LGQQIEQSQRLVMTPELRQALAILQMNTLELSLFIGRELVQNPLLESPDPPREREMAERRESPFGREIQ-------------------------------------------AEGPTLQEHLELQLGLALSDGLRRSVGRYIIGNIDDKGYLRSDPAEIAAATG---VGEEIVGEVLATIQSFDPPGVGARDLAECLRIQLCRQGKLTPHLE---RILEDHLPDVAAGRLHRIAQRLKVTVGEVQAMVDRLKELAPKPGTPFgeGDNRPILPDVIIEQIDGEYLVLVNDGLLPRLTINRTYRHILNEEgpGEAKAYVEERLHSALSLIRAIEQRRLTLHKVVSAIVERQRPFLEQGLAGLKPMTLRDVALKTGVHESTVSRSVAGKYAQTPRGIFELKFFFGSGVRTATGEeaTAGAIKPLIRQLIDGEDKHHPLSDQQIAESLHEQGIPLSRRTVAKYREELGIPPTAQRRRY-
74 UniRef50_B1ZUW1 RNA polymerase, sigma 54 su... 458 1e-127 1 32.2% 2:476 7:497 -SHDLRQRQTQSLVLAPQLRQSLKILQVAALDLRSVIQEELQANPTLEELPMEGESVEKPAETdeHEDVAPPGDDSPTRDELdiDEDWRDHFAngAQPFTAEDAEKRQHFFDSLVSETSLQEHLMQQVVLNDLAPPVHEALHQLIGNLDDRGYLAQSPSDIALQANLPYATVTE---ALKLLQSFDPPGIGSQTLADCLLAQLHAKGRGDT---LAARMLRDHFELLSRRRIPELSRKLGVAADDVQAAIEEIGKLDPAPGRRFAEDSNRVVVPDVVVEKEGDEWKIHLNSDYIPRLRLSSTYRELIAKGtsKEERDYLRERMRSGKFLIDSIEQRQRTIERITREIINAQLPFFEHGVSQLRPLTMTQIADVVGVHETTVSRAIANKYMKTPHGVFEFKYFFTTGYQAESGDSVSNTSVKEMLADLIALEDKSAPLSDQEIVAKLQEKGITLARRTVAKYREELGILPSNLRRDY-
75 UniRef50_Q4JMT6 Predicted DNA-directed RNA ... 457 1e-127 1 33.3% 1:465 3:481 MMPSLQVKQKQALVMTPQLQQAIKLLQMTNLDICNYLQDQALENPFLEVENGPSHETASDLGNGRQDEApdMAGGAALADDPTANADLENRFggHSQRGRPSDLDWDALANLAEQGPESLVECVLRQIDLTIFDPHQRVIAYALSEALEPTGWLGRELSDIAEACG---ADERDVEEVLALVQRLEPEGVFARNLAECLRIQAREKGVLD----AVMTVVLDNLQMLANGDIAQLARRADASTEDVSRCLKLIREFNPKPGEAYESAPLRVHAPDVIVTRGPDGWVVDLNRSTLPALVINEAYAAEIGKAARGKAAefASEALGSARWLRRALEQRNSTTLKIAGEIVRQQAAFLTDGLSALKPLALKDVAEAVGMHESTVSRVTSGLLMATPKGCFPLKSLFSVSLATDEGDARAAAAVRNMIEAIVKSEPAGKPLSDDAIAKLVSGQGVKLARRTVAKYREML------------
76 UniRef50_A9BRF9 RNA polymerase, sigma 54 su... 457 1e-127 1 41.2% 1:476 1:538 MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELANEEGDHDAAAGTREPAAPGAEATeqESRADQPSAAVEWEPSSDASssRTRGQGEEDEADATELARSAESLTDHLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPLDELAQGLAGDDLEehRFTVALRLLQSLEPVGVGARDLAECLTLQLRDQLADAevLRTALDICAQPMDLLARRDLRKLASLCGAREERLREALVLITRLEPRPGRRFADVQRQIVVPDVIVRPVRSgfSVQLNPDVMPKLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFDTILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASSTAVRALIKQFVAAEDPKKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL-
77 UniRef50_A4ISQ1 RNA polymerase sigma-54 fac... 456 1e-127 1 31.4% 1:477 1:432 MRAELWQEQRLQLSLTKELVQAIELLQYSALDLEAFLYEQSLENPFLEIRRGRMRRRTSRT-----------------------------------------DKDRKQWLENISGRTETLAGHLLAQLPGLMLPAKEERMVRHLIAALDEDGYLRVPLAELAARFS---VSEQEVERALRFVQSLDPPGVGARDLAECLLLQLERRPERD---ELAETIVRHHFVAFAEKAWKTLAKQLGVSLGELQRVFELIRTLEPRPGIHYANETPHFIVPDLIVTRqdGGWIVTYNDDIHPELGWNKEYERHIVAVGDRHAERFMKEKYRQFTWLAKSLEQRKQTLVHLMGIIIDRQRSCFESGLSALKPMTMREVAEELGVHESTVSRAVRHKYVQTPFGMIELRRFFSSAATAGAGETASSVQVKAIIQTLISAEDRRAPLSDQQLADLLRDqgIAISRRTVAKYREQLRIPSSAKRKQYT
78 UniRef50_C5D7M8 RNA polymerase, sigma 54 su... 456 1e-126 1 31.9% 1:477 1:435 MRAELLQEQRLKLSLTKELTQAIELLQYSAVELQSFLYEQSLENPFLEIRD----------------------------------------YRLKRNFRNLSDKEKQQWIENMSTYSETLSSYLTAQLPALSLSEHEERIVHYMIACLDEDGYLRVNIEEIAERFA---ISKQEAEKALQIIQSLEPAGVGARNLQECLYLQLKRLPYRD---EFAEQIIQHHFSLFVEKAWKTLAKQLGVDIASLQRVWDLIRTLEPRPGIHYTKERPHFIVPDIIVQreEGDWRIFYNEDVHPELIWNRGYEQKISSCQDGQVHAFVKDKYRQFLWLAKSLEQRKQTLLNIMHVIVDKQKQCFETGFAALKPLTMREVAEELGIHESTVSRAVKNKYVQAPFGTVELRRFFSSAVSSvdEDAASSVKVKMFIRQLIEQENKQEPLSDQKLADLLHEqgVVISRRTVAKYREQLHIPSSAKRKQYV
79 UniRef50_B3E042 DNA-directed RNA polymerase... 455 1e-126 1 32.1% 2:474 4:456 -SLGLYQSIKLHQALSPQMQHSLAILQAPAVELSTIIQQELLSNPLLEISEDKP------------------LEGQSLEGLFHEKEKWYDYLGPNFEGAQRSIEDERKRQFFFDSqpPSMASELSRQLSLVCSDNTLLQAAQYIIGNLDERGYLNTELENIAHELGLAY---DLVEKALELVQSLDPPGIAARNLSECLLLQLKALGKENSLE---FRIISEYLTLLERKKLTEIAKQLKVSLKQVQEAVESIRSLNPFPGSKYRSEEKEKIivDLMVVKEAQDWKVYFNDEFMPRLRINHHYESLlkNDKDPSLKNYLKEKKRSGLFLIKCLRMRENTLLKVAEAIVHCQKDFFDSGPHALKPLTMSEIAQKIDVHETTVSRAIANKYVKTPHGIFELKYFFNSGFQKQTGEFVANQTIKEAIERLIRNEDPRSPLSDQQIVELLAKEGIKMARRTVAKYRAHLKILPSHLRR---
80 UniRef50_Q7UQ69 RNA polymerase subunit sigm... 455 1e-126 1 32.1% 1:474 31:519 MSVGLQARQSQVQKLAPRMIQSMEILQMPTLALQERIEQEMNENPLLEqdDEIPDKDTRSESEKELVVDNDHDNKDDFERLLNMDSdfDDSFRQSANRMSEDADRRHDMMANAQSRPESLNDYLLHQLAEMDIDDEVEQIAERIISTLndGGYLRMPLADLLPS-GHSKEDFEKAEEALAVVQSLEPSGIAARDLSECLISQL---DPSVAHFDELSTLIRSHLNDLAENRLPQISKKTGFSIELIQELREELHLLNPKPGAAFLETYVPNVTPDIILEQDegEYRVRLDDDRVPTLFISEYYRRRLQASdsDAEREFIKQKINGAQWLIDSIEQRRSTLTRVSEAIVEHQKRFLDEGPEAIEPLKMQQIADKVGVHVTTVSRAVDDKWIQTPRGILPLRRFFVGGTQTEDGDDVAWDTIRLKLQELIDKEDKSKPYSDENLVDELKKAGMTVARRTVTKYRKKMGIPSSRQRR---
81 UniRef50_C7ILW5 RNA polymerase, sigma 54 su... 454 1e-126 1 28.9% 3:476 1:452 --MNIEINLNQKMAISPQMQQSMEILQMSTQELMDYVKQLAVDNPVVEFDDQPYDNDRSEILRKKLE---------------WLDSVNKEYRVYNHDL--EEDEENKDVAHYMRGDEEDLYQHLQSQLNLMKAPKELCKTIQYMIGCIDKNGYLQEKTDDMAKAL---RIDEKKAEMALHQLQLMEPAGVGARNLKECLLLQLERLNQNNP---LVITLVNCYLELLGKNQLNLIAKTLGVSIDKVNDAFKIIKKLNPRPGMGFGAkdIHYQTPDLVIVKFCDYYEVLLNNFSDPHISISSYYRNVLSQNPSDNVKNYISDKLKEADWAIKCITQRNNTLLNVTKMLVNQQIGFFDKGPSYLIPMNQKCIADKLQIHESTVSRAIRGKYLQCSWGIFGLDYFFTNGLSIGYDSQIVPDAIKSDIKKIITEEDRKKPYSDQKIAEILNKKGISIARRTITKYREDMEIPKAGMRKEY-
82 UniRef50_Q01PW4 RNA polymerase, sigma 54 su... 453 1e-126 1 32.1% 1:474 4:532 LSPRLQLKVAQKQILTPGLVQMVTVLQLNRLELKEMidRQLLEAAVLTDANSVDGSNGSAINGNLFPDaaEAPAATDPFDEIDFGSFFDEYLDPGYKSPASESV-EKPSFETFLTAPITLGDHLRSQLSVSLASDEVRDAAESIIGNLDEDGYLSASLDEIAAMGSH---TAAEVEQALIVVQSLDPAGVGARNLRECLLLQIESINGR---GGVAWQIVSNCLRLLETKQYKEIAKVLSRPLEHIETAVHMIQHLNPRPGLRYSGAGARVVEPDVFFTKDGDDYIIQMNDEDVPQLRLNAQYRRMLDRENgkEVRDYVRERYTSAIQLMKNIEQRKQTILKVCQAIVRRQTEFLSHGLDYLKPMMIKEVAEEVGVHPSTVSRAVASKYVHTPQGVFELRYFFSEAVQGPSGGGTPLLLLKRKVKKMIDDEDRSKPLTDEQITLLLQGEGINVTRRTVAKYREDMKIPSTHQRR---
83 UniRef50_C7IQW3 RNA polymerase, sigma 54 su... 453 1e-126 1 35.0% 1:449 3:427 MEFELKLQQAQKLIMTPELKQAIEILQLNSLELNALIEQELETNPVLEKEETSEEENAYEYDLYELSKYIRETEERMYYDDSDDEEIEEVNY------------------ENFVSPKSSLSDHLLFQLHITPVPPKIQKICEYIIFSLSPSGYLREDIKDIAEIL---ECSEEEVLDGLSVVQSFDPPGIAARNLQECLKLQLLA---QDSYKGIVKKLVDYHLEEIAEGKYSYLAKLYNISLKEVQQAVDFIKKLNPKPGSSFSStdVGYIIPDVEVIKREGEYFVIVNDSVTPKLKINNYYHSILNSH-DEEAKKYINSKLQSAMWLIKSLESRKETLYKVVKAIVELQRDFLDKGINYLKPMTQKQIADIVGIHESTVSRAINGKYVATPRGLFEIKFFFQSGISNRNGNEISAESIKNLIKKLIEEEDPANPLSDQKIADILKEK----------------------------
84 UniRef50_D1N390 RNA polymerase, sigma 54 su... 453 1e-126 1 29.6% 2:477 5:472 -QQTLSTTLRQEQQLSARQLQSLELLNLPALELEERLTQELAANPLLEAEVQSEPVELPAQPEAPEKEDESTLDERAVENEEWAD----ELPMPPGTGEAGFTNEENDFMLNSLSDAPTLQEQLFSELATCDATPEVRRLAEEIIGSIDDTGYFRSTPADLAMSENAELADAEAALK---LVQSFDPPGVGCRDLAECLKLQLERTGELTPLY---REILDHHLEEIARNHLPQLARTLRISLEELNRCLARLRRLNPYPGSALAPEHADFVMPEviVRGADGEYEVAPRRNGMPRLFLAERYLKLLETPdpTADKAYLRDKLQQARELMRALDLRQSTIVRIAGVIVATQRDFLDNGVAALKPLTMKQAGEMLELHETTVSRAVANKYVETPQGIFPFKFFFTAGFTGEDGTSVSNRAVMEKIKELIDKENPAKPLSDEQLAQMLKAGGLAVARRTVAKYREGMNIPSSSLRRKHM
85 UniRef50_A4GID2 DNA-directed RNA polymerase... 453 1e-126 1 35.0% 1:474 3:495 LSQSIKLRQKQSLVMTPQLQQAIKLLQMTNLELSQHLQEQMYDNPFLEVNGATETetEGQNDVSALRESAALADDPTQNQEIENRFDTALVDMPSNPGVRNKFADGDFDPIDSLTSEDGFYPMLFKQMNLTFSDPADRIIATHFINALEPSGWIGNSVEAIAEESG---CSVEQAETVLAALQGFEPAGLFARDLAECLKIQLIENNQFSHLFGQ----LLDNLEQLGRGEIKQLARKFKCAPEDIVEMLSIIRTLNPKPGEHLGIEFREMPSPDVIVTRKKQGWSVELNRSTLPSVLVNEHYAELMAKQkdQAVQDYSAETLTNARWLKRAVEQRNQTTLKISAEIIRHQTDFLEKGLDYLKPLSLRDVALAVGMHESTVSRVTTGLLISTPRGGMPLKSFFSVNIASRDSdnASAASVRNMVKKIISQEVPGKPLSDEAISKVISEQGIDLARRTVAKYREMLNIPSSSQRR---
86 UniRef50_C1F1M0 RNA polymerase sigma-54 fac... 453 1e-126 1 30.2% 1:474 4:554 LQPKLNLKVAQRQILTPGLMQMVSVLALNKLELKEMIQAEIAENPVLEEMEESVPLLDDVARREEDHdsSEESEKKDPFDEIDFGSYFQDYLDPGFRTPNSFELTEKPSIENFLSAPSTLSDHLLWQLGALTLTPAIRDAAEYLIGNLNEDGYLPADEEDLLEGYLREQLAPEGAESvlEVVRQLDPIGIATRDLRECLMVQVAAQRREFDLieTAAAILDRHMLLLQKRDPRELSKAVARSVEETQRAIDFIRTLDPRPGQRYNRSEARLIEPDVAFVKRDDEYVVVMNDEDLPSLRLNHGYRRLlkDGAEKDVKDYVKERYRSALQLMRNIEQRKNTILKTCESIIRRQTDFLENGIEAMKPMMIKEVAEEIGVHPSTVSRAVSNKYVHTPQGVYELRFFFSEGVNGPEGSGTPLMLLKRKVKKLIEDEDPSKPLTDDQIAQMLQSQGIEVTRRTVAKYREDMKIPSTHQRR---
87 UniRef50_C6W3I8 RNA polymerase, sigma 54 su... 452 1e-125 1 32.1% 13:473 12:477 ------------LKYSPLQIQMLNLLHLTTMELEQRIKEELEENPILEEG-KEDSTSEEAPEEFDDADISSGGDDNTVQDYYDWDEFRDDDIPDYKTYANNQSADNELYTRPMVEA-ISFRDDLKQQVHFLQLDERQQLIADFILDSLDEDGFLRRESDVIADDISFAniDTDEVNTMLKVIQQLDPPGIAASDLRECLLIQLNRMDNQNDTWKWAYKIVCDAFDELGSRNYDKIMRITGLDEESLKKAIQLITTLNPKPASGLRNDanESIKPDFMLWyeDGEIEVQLTWGNSPALKLNKVFTQMAEEKRDKATNQFLKNKMNSAKWFIDAIKQRENTMLNTLKAIVKLQYDYFQTGdkKLRPMILKDVAEIIDMDISTVSRVTTNKYVQTPFGIVLLKDLFTEGVTNEDGTEVSNREIQEAIREIVSEEDKRHPYNDQQITDMLAVKGYSVARRTVAKYREQLNIPTARLR----
88 UniRef50_A6CNF4 DNA-directed RNA polymerase... 451 1e-125 1 28.6% 1:476 3:429 LNTGLWQRQSLKLNMTQQLTQAIELLQYSSQELNAYLESKALENPLLQLEPVSYEERTR-------------------------------------KRNQEYNGMSIDWIEEIAVQQHSLWEHLNAQLNLKTLNHEDRNTLSLLFDSLDENGYLPSNIESLFR--------VSDLSTYIEMLQSLEPAGIGARNLKECLLLQIQR---DTEAPEHAHSIIEHHFAAFCEKTWKTITKELGITLSDIQLTADYVKTLNPRPGARFTSEAPQYIRPEMNVTRSKDGLEVQLVDGSVMKIKYNSEYDELIASSKDKEGLKFMRDKKQEFQWLLKMLDQRKTTLMKVGKCLVERQEAFFRYGPKELKPLTLKEVAETIGVHESTISRAVRGKYIGTPCGTYEMKALFVSGVGKDE-DAVSSEGIKAEIMQMVTTEDKKKPLSDQAIAVMLQEKGLHVSRRTVAKYRDQLNIPSSTRRKRY-
89 UniRef50_D2R5L0 RNA polymerase, sigma 54 su... 451 1e-125 1 31.0% 1:474 3:489 LSFGLEARQVQVQKLAPRMIQSMEILQLPLQELQERIEQELAENPLLEMLDRddEQVERELPNEKDVDdeAHNNADDFERLLNLDREVPDYFDESRRSSNRMEEDSddVISNVADRPESLQDHLLHQLGEMDLSLELMQMAERIISTLddGGYFRSSLRDLLPIDATKE-QIALAERALALIQQLDPPGIGARDLRECLLLQLT---PTMFMYEELKTLITSHLEDLRDNRLPLIQKSTGYSIDRIQKAWSELRKLNPKPASGFSEAFVPNVTPDvvVRGEDGQYLVQVDESRTPTLHISKYYRERLAstATPEEREYIKRKINAAQWLIESIEQRRSTLTKVSQAIVDHQTKFLDEGPEHIEPLKMQQIADKVGVHVTTVSRAVDDKFIQTPRGIFPLKRFFVGGTQTAEGDDVAWDIIRIRLQEIVDKENKQAPLSDDDLVEELKKQGLNVARRTVTKYRQKMGIPSSRQRR---
90 UniRef50_B5ZLK5 RNA polymerase, sigma 54 su... 450 1e-125 1 34.3% 1:475 3:447 IGPRLALRQAQTLVMTPQLRQAIHLLQLSNLDACSFIEQELERNPLLERANLAGLEELRPKVVAHGARHDPRLERVP-------------------------DQDWAATTGTLPGPAPSLHERLAQQVRLSWRDAGDRLVGAYLITLLDADGRLVPPTAVIAQSLGT---TFDHVERVRQTMMQFEPTGLFAHDLGECLAAQLRERDRLDP----AMAVLLRHLDLLARRDLRRLQGLCGVDAEDLADMIAEVRTLSPRPARDFGDPAACSVIPDVLLQPadGDWMLELNPETMPSVVVNSALSTRVALRARREDRPFLNERLASANWLVRALQQRADTIIRVATAIMRRQRGFLDHGIGHLRPLVLRDIAETVGLHESTVSRVTANKYIATPRGLFELKYFFTTAIPGRAGgdHSAEAIRHRIKTLISQESDGKILSDDAIVTRLRKEGIDISRRTVAKYRDALRIPNSAQRKR--
91 UniRef50_UPI0001C34EB5 RNA polymerase factor sigma... 448 1e-124 1 29.2% 2:477 16:469 -RTELFIKAEQTQALSQKMILSNEILQMGVQELCEKLGEIFLENPVVDLSQPSPED--------------------ERMAKYQWLESLNDRNRDTYMHESRDDEEGNDDWKFRQEDGESLQDYLWSQISLKELSGKDEEIITYLMESLDDRGYLDEPLDSVAERFHEPK---ERVEEILSQLQTLEPAGVFAKDLSECLLLQLKRNRMDSPA---AEEIVREHLELLAANKIPVIAKKVHLSVEETAEICQAIRNLNPRPGSHFAseQLSYLIPDVTVVKFADRFEILLNESTYPTIEINDYYRKMAVQSDSSQVHDYLREKLRQAEWIRTCMEQRGRTIMNVTKTILMLQSEFFEKGPSHLKPLKQSEVAEMIGIHESTVSRAVRQKYLQCSWGIYPMNYFFSRGISEegGRAVSVQEVKNALTEIIREENKKKPFSDRILAEKLEERGFTISRRTVAKYREELGIPDAGGRKVFL
92 UniRef50_A0RKT0 RNA polymerase sigma-54 fac... 448 1e-124 1 30.4% 1:474 24:455 LKASLLQEQSLRLAMTQELRQAITMLQYNVQELSEFLYEQSLENPLIELGGFEREKKKSSNNSKSTSKQVEN------------------------------------QMEIYSVDSTTIQQHLLNQIQYYKIEEEERKVASFIIMNMDGNGYLQETNEELANLLSAP---LHVVDRSVELVQSLEPAGVGARNIQECLTLQLKRLQRRN---GLAEEVVEDHFAYFVKKDWRKLVQVLKCSNEELQDAVNCITSLQPKPGLAFSSDKPLYIVPDMAVKKDGDRLVLQMNERNMPRIEIHSEYSALLNNSE-SEVASYVSEKYQHVQWIMRSLKQRKQTLLQVMTIIMEKQRDFFWKGPEYLKPLALKEVAEELSVHESTISRATRNKYVQTPHGLFEMKSFFSNAVSTTEDEAVSTKRVKQFIQTLVEAENKKKPLSDQKISKLLEEeeIVISRRTVAKYREQMHIPASSLRK---
93 UniRef50_C5ELZ1 RNA polymerase n=3 Tax=Clos... 448 1e-124 1 29.1% 3:477 1:461 --MDLKLQVKQTQTLSQRMIQSAEILQMTSQELNTYINELALENPVIDIVEPPAGNQQKES----------------IEEQQWLNSFNEENYYLYQRQNNDDDYDFKNSWNINTDDGETLQDYLWSQLVTEEFSSLETDMIKFMLESLDNKGYLGEGVEDIASYF---QTDLSVVERLLYTLQQLDPAGVCARNLEECLSLQLERRQMLTPVLS---SIINGCLEMVARNQIPAIARKLHLSQAEAAGYCQIIKSLNPKPGVSFSseKLRYIIPDVTIVKFKEHFDILLNESMYPNIEINSYYSQMNRNPDSAELKEYLSNKIRQAEWVRQCVTQRGKTLMQVSKSILEHQEGFFTYGPSHLAPLKLADIAQELDIHESTVSRAVSKKYLQCSWGVYPMNFFFSRKVspDNASAVTAADIKRALREIIDAEDKKKPYSDRLLGEKLAERGISISRRTVAKYREEEGIADASGRKEYV
94 UniRef50_B6YQD2 RNA polymerase sigma-54 fac... 447 1e-124 1 29.3% 4:474 3:468 ---KQQLSYKQQQKFSPQQIQQTKLLELTTLEVENRINEELEENPVLEEIPEPDEYGLQIERLNKSDT-----------------FLGGSLREDNVHSYKFQQNGSLNRWEMVYAEPESFHEYLLNQLKLKELSEEEIKIGQYIIGNMDDNGYIRQSFQTLSDDISFqdVSISEIKKVLESIQGLDPPGIGAGDLQECLLLQLRRKKI-TPIRCLVIDILEKHFAIFAKKHYDSLCKIYNISKENLKDVIREVALLNPKPGNICeeSKLAHIIPDFIVEIIDGKLIFTMAKRNMPTLKVNEGYSEIlkSLKKREVVAFVKKKINSAQWFIDAIKQRNTTLYNTMLAIIELQQDFFLTGEeaLKPMKLKDVSQLCGYDISTVSRATINKYIQSDWGIYPLRFFFSEAMINEEGEEISTREIKAILKFFIKTEDKKNPFTDDVLANLLKKKGYNIARRTVAKYREQLNIPVSRLRK---
95 UniRef50_C9XR96 RNA polymerase sigma-54 fac... 447 1e-124 1 34.0% 1:476 1:448 MNFNNSLeqSQKLIMTTQLKQSLSILNMSKLELEEEIKREAENNPLVE-VEKSGEINWEEY--IKDMDRSRRLDRTEI----------------------SYNPDNEVNLENLVKYSSNLYEDLKFQISLYKLTDKELEVCEYIIDSLDEDGYLRTEEKVIVDTL---KIDEELFEKCLISVQQLEPSGVGARSLSECLMIQMASLGIYNEILE---EIVTKDLNLIANNKYKEISKKYNMSLQKCVELINIIKTLDPKPGRTCSVEKSVYIQPDVTVEKIDDEFIVYLNEKDSYQIRINSYYKDILKNSQSDeaKEFIKERLNSATGLMKNIESRKTTVLKIAEEIVKAQDEFLRKGTKYIKPLKMKDIAEKLEFHESTISRGVNGKYMLTPFGVYEFRYFFSSAIETENNEMASSTSIKKIIKETIKDENKKKPLSDDHISKLLKEKGINVARRTVAKYREELGIPSSSKRKEY-
96 UniRef50_D1R8J1 Putative uncharacterized pr... 446 1e-124 1 30.9% 2:474 12:494 -KMQQSLKQTQRMIMSPQMQQAIHLLQMPLMELVDRIETELEQNPILESIQDYPEEDQDLTRLEEDNSEADLDEEQPPEKElqIDEDFRDHFAESGNYYTKRTEEEEKQKNFQLnaHVSLFEHLMTIAQETFANPKDIQIAESIIGNFDERGFLQTSLTEIAVL---NDFSVKELQRVLKTIQTFDPFGVGASDLQESFLIQLRCQKKE---HSLAYKIIEDCYEDLLHNRLPIIKKHLNCSIEDIQKAIDkiSKLDLHPGASFSGEIAQTIVPDAMIKEEDGKLDIVVTSDFLPPIRLNKRYMKMLEDEssDATRDFIRQRVISAKWLLRNIHHRNTTIDRIAQFLAQQQHAFFQNPDGQLVPLTMKTVADNLGLHESTVARAVAGKYVETPRGLLPFRFFFTNAYMTDEGSDISAETVREAIKDIIDKEDKSKPLSDHKISDLLEIKGIHCARRTVSKYRAELNLGNTQQRR---
97 UniRef50_P38944 Putative RNA polymerase sig... 444 1e-123 1 30.5% 1:476 1:453 MDFALNLTQEQRLAMTQEMQLSIKLLQMSSFELQEYVEKELQENPVLDIKESNVDKVEK-----------DKLEYKEIIKNLDFDN--------YSHHSYDRNPDEEVSPFNFISEEKSLKEYLKDQIRDLDENQCIKTICLYIIENIDDRGYLILENE---EIEEELKISKELAAYCVDLIHSLEPHGIGARNLAECLKIQIKQKDMDE---ENIFIMIDKYLEFIAENKYNVIAKELNIDVKQAQEYGDLIKTLSPKPSRGFYteSVRYISPDAYIKKIDSEYFIIMNDDLTPRLTINAIYKDIINNDTDKDAVSYVKEKLNSALFLIKSIQHRKSTIYRVLEKIVEIQKDYFDYGESYLKPMTLKEIASSMDMHESTVSRAIRDKYIHINRGIVKIKDLFTTGMAAssEENVSSLIIKNSIKKMIDNEDRKKPLSDQKICDLINEEGMNISRRTVAKYREEMGIKSSKGRKRF-
98 UniRef50_C7PK09 RNA polymerase, sigma 54 su... 439 1e-121 1 31.2% 16:476 15:497 ---------------SPQQIQLMKLLQVPTAVLEERIKEELEENPALEYGEDAHEDEYKDPQEenNEEGDDDEFEPDGSENEYDNIDISEYVSEGDDDIADYKLRDDNYPDqpVRVETSFHEHLLEQLGMLELDERQNAIAEQIIGSIDDDGYLRREVSAIVDDLSFSqtDEEEIRELIRMIQEFDPPGICATDLKECLLLQLRRKPQDDFGVVGAYLILENYFDEFTKKHYEKIQKGLNMSDDALKEAIGQIIKLTPKPGGNFAtkAESYVVPDFFILNNNGKLELTLNSKNAPDLRISEGYRDMLKEYDRGDKKdfIKQKIDAAKWFIDAIKQRQHTLLSTMESIMGYQREFFLTgeTTMRPMILKDIADITQLDISTVSRVANSKYVQTEFGTFKLKFFFSESLSTDSGEEVSTREVKKILSDLIEGENKRKPLSDENLTKMLQDKGYNIARRTVAKYREQLNIPVARLRKEL-
99 UniRef50_UPI00016C46F0 RNA polymerase subunit sigm... 438 1e-121 1 33.1% 19:474 1:480 ------------------MIQSMEILQLSITDLQAKIDDALQENPFLELKEKLGETDEPPTDFNPDApkHDETGDLEFNRLEELNRDWDDHFNEEHRGSRASLEEEGDrmANMPDRPPSLQDYLADQIGELDIEEDDRRLARHICSFVDRTGYltVTLEEIAA-LYDRLVTPEDVEDVlhVVQRLEPAGVAARDLKECLLLQV---PHDAPHADALRTLIRDHLEDVAYNRIPVIQKATRLEIAAIQEAIEEIHHLDPKPGLKFSDSGTQYVMPDVVVErdDNDYTVRLTDEWVPRIRVSKRVVDMCKRQddDKVKDKLRQKLQQADWLVKAVEQRRNTLMKVTKAIIDHQRAFLDFGPEHIQPLKMQQIADQVKVHVTTVSRAVDDKWVQTPRGVFPLKRFFGGGKAKDENDVNSeeVMKQKLLELVSNEDKANPLSDEELVARLKAGGCPVARRTVTKYRKMLKIPSSRQRK---
100 UniRef50_B3QT08 RNA polymerase, sigma 54 su... 437 1e-121 1 31.9% 3:476 4:513 --QSLSQRQVQTMRLSPQQLLYTKLLQLPLIQLEQRVKQELEENPMLEEFSESDEEAGQPEesQNNDDENKLNEKSEQNEekEFDQEIEEYFPDGDEEgpSFREEPSDESYFQPVFHESFTERVLNDLRYQDVTEKELAIAEEIVGNIDEDGYLRCPIEVIADGLMTteVTEAEILKVLEKIWYIDPVGIGARNLQECLLIQLEAkdIDDTLYEQAKLILNKYYHEFTMKHFEKLMTLLSISPEELTQALLLIQSFNPKPGGDVSASS-NYIIPDFIVTFDGKNLVAFSNERNSFQIRISEQYKPLLEdsQPKGAKEFVRNKYEAAKNFMTAIEMRRQTLQRVMNALLNLQYEFFTIGPNRLKPMILKDVAEVAGVDISTVSRVVNGKYVQAHKGILELKYFFSTGLETESGDEISNKLIKEKIKSFIEKEDTRKPLSDDKISEMLQQNGFKVARRTVAKYREQMNIPVARLRKQI-
101 UniRef50_Q0G1W5 DNA-directed RNA polymerase... 437 1e-121 1 35.2% 1:475 3:461 LAAKLQFRQSQSLVMTPQLLQSIRLLQYGHGELKTFLEAEIERNPLL--------SMAPAKPLSKSIQAVDGPQ----PGEGSAMPSRSERYGGTSGSGQRFDGLDTG-FANVADTNISLLGHALAEARDIAGSNDTRTIAEAFADELDENGYCRCDPAEFAIANG---FDPDRTTEVLLKLqeAAPAGLFARNLKDCMAIQLKRRNRYDPIIAK----VIDNLELLANRDFAALRRLTGEDDHGLLDILAEIKSLDPKPGHAFDGRGGEGIEPDVLISADggGWVVELNPATLPRVLTDRTYLKRVRkaATEEERSFLSECLQSASWLERALESRAQTIMKVAEEIVKRQGGFLVEGISGMKPMTLAAVADAIGMHESTVSRVTNMKFVATPRGVFEMRFFFTRAIAAANGGdhSAESVKLRIKRLIDAEVPGKVLSDDEIAAILKKEGIDLARRTVAKYREAQSIPSSIQRRR--
102 UniRef50_C9KMQ5 RNA polymerase sigma-54 fac... 436 1e-120 1 32.6% 1:476 4:455 IEQSLGMNLSQHLAMTMQLQQAIQILQLSSQDLCAVIEKEYLENPVLEMEYPTGRRELYEQDGSMNVRA------------------LADYLDGGSKQPAYFTDEDDRQFDAAAPLHMTLEEELLEQVNFTFKENeeRAVATFLVGSLDSRGYLTLPTAEAARAMG---CSEAEILRILAVIQSFEPAGVGARDLAECLRLQAERQGI---YEGLIAAVIDRHLDEVAAHRIKEIAAAEHVEPAAVQMAVDIVRRLNPKPGAAYGTGAPAYITPDVIIRRGEQGYEVEVEESDVPQLHISALYRQ--SDTFDKATQKYIASRLHAASWLINSIEQRRATIRRVVEEIVRRQPAYFEKGPAFLQPMTMKDVADTIGVHESTVSRAVANKYAELPTGIVALRSFFtrSTRSETGEDVAAAQAKSAIEALIKGENPKKPLSDQKLCTLLKSKGIALSRRTVMKYREQLGYDSSVKRKRY-
103 UniRef50_B0RT01 RNA polymerase sigma-54 fac... 435 1e-120 1 38.3% 1:475 21:477 MKTTISAQLGQQLHLTPQLLQSIRLLQLDGMQLELEIRRALETNPLLELEELADSSD-------EAPSAEDGATDMAAFDELPESTMWEV------QSSSWNGEDDDRMQRVAAGESTDPHVRILRELAL-DLDETDLGTAAFWLEQTDDAGYLTEALPTLQQLAATrgISVDAAEAIRQRLLHGDPAGLAACDLRECLQAQLAALPGRVPARHLAGRILAGDLDLLAGHDYALLARAHDADVDDVREAVRLILSLQPRPGDDLLQETNASVIPDVLAWHADGSWRVALNPATTHRVSINPVHERALAEAGDAA--QPLRDMLQEARWLTRGLSMRYETLLRATRAIVERQAAFLARGEEAMAPLTLKEIADEIGMHESTISRITTGKYIQTPRGTFELKHFFAVRL---EGASVSGQAVKAMVRRLIESEPAGRPLADEAIAGLLSRQGVNIARRTVAKYREQLDIAPARERRR--
104 UniRef50_B8CYG5 RNA polymerase, sigma 54 su... 435 1e-120 1 32.6% 1:475 3:436 LRFDLDLNQKQELVMTPKLKLAIKLLQYSYQELENYLEEELKRNPLLEKESSNG--------------------------------DYFQNHKNYSDYDYSNDRNSDNNYENFVTYKINLTEYLESQL-YQVCEDHELKIARYIIGNLDDRGYLRTTVSEIGHHF---KVEESEVEKVLKKVQQLDPVGVGARNIREALLVKLGNLG-DDENTEIAKNIVTNFLDELASGKIKEIIKKIKKDKEQVLKAINLIKELEPYPAAGFakENTGFIVPDVIVRKVEGKFVVEMNSSLTPSLKINPYYYKMLQDVGG-ESREYLEKNYKSALWLIRSIEQRRITIYRIAMAITNRQQEFLEKGIKYLKPLTMEELADTLGIHESTVSRATTSKYIQTPQGIYELKFFFSGGVN-----GVSTTSIKAYLKEYIDKEGAKNPLSDKKLARILKDegVNISRRTVAKYRKQMGIPSSRKRKK--
105 UniRef50_B5YI16 RNA polymerase sigma-54 fac... 435 1e-120 1 32.3% 36:474 38:467 -----------------------------------YIQLELMENPILELDEETENIQENEVSSEEY----EEPVAVDKLEKIMIDEYFAERADDGRDLGynPGVEEKPSFELFYSTTTDLWEHLLWQLRLSKAPDKIRAVAEVVIGNIDEDGYLKATEEEIAKM---SDTDNETVKQAIALVQEFDPAGVAARDIKECLILQIKALGLGDT---LVQSFIEEHLEDIKKKKYENIAKRFGISIDEVIKSVKIIEKLEPRPGRNFSKTQVNIPVPDVYVTKVEGEYQIILNDEGIPKLRLSKIYRELFTEKnpVQEKKYLREKFKNAVELLRSIEQRNKTIYRVTESLVKFQKEFFDKGVSYVKPLNLKDIAQDLGLHESTISRVTSNKYLACEHGLFNFRFFFSNALSSNHGG-ISTTLVKDLIQKIINEENHTNPLSDKEISDMLKKQGIDIARRTVAKYREELKIPPKPLRK---
106 UniRef50_D2UDB4 Probable rna polymerase sig... 433 1e-120 1 38.3% 1:475 1:456 MKPTVSAQLGQQLHLTPQLLQSIRLLQLDGLQLEMEIRRALENNPLL--------ELEEPEAATEAETAVEAVLQTAAFDELPEPSMWDV------PATGWNDGEDDRLQHIAAGESTDPHLRVLQRLAL-ELPPREIEAAAFWLEHCDDAGYLDDALDTllLACTRLDLSAAQVETARQRLLHGDPAGLAACDLRECLHVQLHDLPGPVPGRHLAARILDGDLHLLASHDYALLARKLDAEAEDVREAVRLILSLQPRPGDSLQPQDLGHVIPDVVAWQADGSWRVALNPATTHRVNINPMHERALAEAG--EAAQPLREMLQEARWLTRGLSMRYETLLRTTRSIVEHQAAFLNKGEEAMAPLTLKEVADAIGMHESTVSRITTGKYLQTPRGTFELKHFFAVRL---EGAAVSGQAVRAMVRRLIEAEPSSRPLADEAIAALLSRQGVNVARRTVAKYREQLDIAPARERRR--
107 UniRef50_C9BP10 RNA polymerase sigma-54 sub... 433 1e-120 1 28.6% 2:476 6:442 -NFSQKQQQTQKLAMTQQLQQSIQVLQYNSEELLAFVENQAMENPLVEVVEPE----------------------------------WQPDYIKA--SSSSYEGEETNYLNQIPDTKGSLFDSLIEQVHLNYRDTFLRKIVLYLVEYIDLNGFLTISLEEAGKEIGATPI---QMLDALTLIQQLEPAGVGARSLQECLMLQTER---DDYAPELAYIVLEECFEELVERKWKEIAQRFSVDLHAVQQIFDYLQTLSPSPGRIFDRSSELYIIPDVRVLVDDDkvQVISNRKNQPNIRFQESYFKQMSQQADKETENYLKERKQEFEWLKKTILQRGDTILRVAQVIVSRQKAFFIDKERPIKPLTLKEVATEIDVHESTVSRAVNGKYLETDFGVFELKKFFTTRisTEQTEDLSADTAKKKLQELVDQEDKNKPLSDQKLVELLKKDEIAISRRTVAKYRDLLGIPSSSKRKRY-
108 UniRef50_A5EVL1 RNA polymerase sigma-54 fac... 433 1e-120 1 33.8% 3:475 6:467 --QNLNINLKQQLSLTPQLQQAIKILNMNQQDLQVEIAQMLTQNFMLELDD-----HLQMQRVDSEEEPPKEGLLDELNAELEYDCDWEEVYDSDWHDHAPY-REQEIDFDAIIEARPALLPYLREQLQQMPLSPEVLGAAEAFISHLDEDGYLREKCADLAQQ---YRIKMPVAEAAIQAIKNCQPSGVGAFDLEDCLNLQIALLPENTPYLSVLKRIMTRHF-LFIGKNPQLICNRLDLNESDYEQAVLLLKTLNPRPAQEFAHEHGQYIRPEVIVREKGGISFIETDEHIQPLLRINAEYAKLTQSAVD-QDKVLLQAQLNEARWFINAIDKRADTIQRVASVIVALQQDFFQEGEKAMQPLTRQKVAELLNVHESTVSRAVNGKYLMCKRGIFELRYFFSSQLETTDGEEQSSTAVKAVISEIVRQEDPKKPLSDQKIADILLKKGYKIARRTAAKYREELGIATSTMRRE--
109 UniRef50_C8N804 RNA polymerase sigma-54 fac... 433 1e-120 1 33.8% 2:475 4:473 -NQSLDLSLKQGLTLTPQLQQAIKLLNMNSLDLQVEISAMLMQNIMLERKNDsqERGSGSDENENSEHDPDNGLIQTLSGELEYDSTWDEHYDHDWKDHQPYHEEES-NLELYLSGRPDLGAWLEEQINQMplSEARRRAALIVAFELDDDGYYRADNHKLAEQ---YQLSAADIADGLRIVQQCQPTGIAARDLEECLNLQIAALPADTPWREELQKIMQRYF-GFISKNPAMIRQRLGMNEATYNHAIALLRSLDPRPGQSYTEQAPQYIEPEIIVREKNGISYIETGENIRPELTINQDYAK-IAEIAKGADKTLLQAQLQEARWFLTAIDKRADTIRRVAHIIVALQQDFFQEGEAAMRPLSRQKVAEMLEIHESTVSRAVNGKYLMCKRGIYELRYFFSAQLENSEGDDQSIIAIKALIAEIINGEKPEKPLSDQKITDLLNEQGHKIARRTVTKYRESMDIPTTTLRRK--
110 UniRef50_P24219 RNA polymerase sigma-54 fac... 433 1e-120 1 28.4% 1:476 1:435 MDMKLQQVQVLKPQLTQELRQAITLLGYHSAELAEYIDELSLENPLIERKETDTPPLSYHKTNKNRMNAQEAG-------------------------------------LQLSNPQKTLQDALKQQSLDMNLTNTEKKIFNYLIHSLDSNGYLEEDIEEAARRLS---VSAKEAEAVLAKLQSLEPAGIGARSLQECILLQLQRLPNRN---EQAEMLVSAHFDAFAQKKWKTLSVETGIPLHTIQDISDDIAALHPRPGLLFapEQDVYIEPDIFITVKNGHIAAELNTRSFPEIDLHPQYRTLLSSGSCQDTVSYLSAKYQEWRWLSRALRQRKQTITRIINELITRQKDFFLKGRSAMKPLTLREVADCLSLHESTVSRAIKGKTIQTPYGLFEMKLFFSAKAEASGDGDASNYAVKTHLENLINQEDKTKPLSDQKLVDLLYEqgIQISRRTVAKYRDQMNIPSSAARKRY-
111 UniRef50_A9H5R6 RNA polymerase sigma-54 fac... 432 1e-119 1 30.9% 2:473 7:455 -QPRQEFKQNQGLFMSARMRQSIQILQLSNAELHEFLDAEVEKNPLLERDPTTSAPLAERPGLAAPPPMMRAPGATGDAGRWTSDSGLDD-----------------DGTGRLAESAPALRDVMFEQLVLSGCTTTEREIGAHLIAALDPAGRlgGATDDIAATL---QVTLRDVEAIRQRMMRFDPAGLFATSLRECLAAQLQERNRFGP----AMARLLDNLDLLARHDLKRLRQACDVSATDLEDMIAELRTLDPKPGAEHGSTLT-VIVPDILMEQteGGWTLELNPESTPRVVLNSALSTRMSLRAHGAERTYLNDTLTSANWLIRALQQRSMTILRVSTEILRRQEDFLQHGPQALQPLNLRTVAEALNIHESTVSRVTANKYVATPRGVLPLKFFFVAAMTGNDGEIRSNIAIQSVIRRMIQGERPDAVLSDEAISLTLRRQGIDIARRTVAKYREAMGFPNSLQR----
112 UniRef50_Q2B706 DNA-directed RNA polymerase... 431 1e-119 1 30.7% 1:476 3:442 MNAGLFQQQSLKLAMTQELSQAIALLQYSALELTAFLESRALENPLMQI----------ETENVRAMDPRRDRVRGASSKLKKDDRSWIEQIRAKDNL---------------------LEDYLISQLEIKYISPLMDKIIRRIIKSIDENGYLRESVTEIADELCVSEGDAAE---ALAELQLLEPAGIGARTLQECLLLQVQRLLSPDD---LAEVIMEEHFEWFADKKWKQLASLLGVELKDIQRVSDLVRTLNPRPAAAFSKESAGYIVPDVAVSWDGSSFLITVQDELLPKVSFNSQYYESFKSTGDKEVRKYLQDRSQDYNWIVRSLEQRKDTIKKVTMKLVEKQQDFFIEGPAKLRPMTMKEIADELEIHESTVSRTVREKYVQTPFGTFELKTFFTSAVKTTGADGASSASVKKKIAAMVEAEDKLKPLSDSEIMSILEkdAIVISRRTVAKYRDQLGIPSSAKRKRY-
113 UniRef50_B0PGS4 Putative uncharacterized pr... 431 1e-119 1 27.7% 3:475 1:446 --MELGVRLEQNQILAPRMEQSVRILQMDSVQLGEYLKELALENPVAE-VEPPPQREQKEKLAQRKLEWLENQTRREQENMGYYDD----------------DGDLTPEQNTPAPQDESLTDHLLAQVESAAVPRALAAAARYVIGCLDDNGYLKADPEQMRAKAGACDA---LLERAIALVQSFDPPGVGARDLAECLCLQIPASD------ALARRLARDFLPEIAKKRVGVLAAKTGASAGEVEAAVARIRRLNPKPGALYghVVAHYITPDIVVTSFGDHYNVMLCEFAYPQVRLSDSYLQIARETADPEVIKYIGEKIDQVNWVIKCIENRNRTLVEVARAIVRQQERFFRYGPQHLGVLRMREIAGLVGLHESTVSRAVRGKYLQCAHGVYPLRYFFVKG--PEHGGAVSSETVKYKLRALIDTEDHTHPFSDRALCELLAADGISISRRTVAKYRGEMGVPGASGRVR--
114 UniRef50_C8PV20 RNA polymerase sigma-54 fac... 430 1e-119 1 38.9% 51:474 161:596 --------------------------------------------------DADSDYRYDEEYGLDGIDSSEHLSSQQV--DMPVDAQWDDIYSYESSAATGIDSEDSQD-DYKLATQGNIQDYVRWQLNLRRLSTIDMLMAEYLIDSMDERGFITLSNDELFQSFDTmdLALEDIELVVKQIQNCEPLGVGARNLAECLLIQLNKLPSDTPSWQAAKQILM-HSEFFANNNINALLKSSNLDVSEIQPALALLRTLNPNPALSYEKSQRqyDIPDVIVVQRGQHWEVSLNPETLPKLRINQVYAKLVSRNDNSEQGVYLKEQLYDARLFIRSIEERNQNLLKVATCIVKRQQAFFEQGVMAMQPMVLKDVADEVGLHESTVSRITTSKTIVTPKGLFSLKYFFSSQVSSDEGEGVSSTAISAMIKQMIEAEDPKKPLSDSSIMKNLQDKGIDIARRTVTKYREGMNIGSSTQRK---
115 UniRef50_B4SIK0 RNA polymerase, sigma 54 su... 430 1e-119 1 38.7% 1:476 1:458 MKAALSTQLGQQLHLTPQLLQSIRLLQLDGLHLEQEIQRLLDSNPLL-------EIEEAEAPAAESTDADATTLETAAFDELPESSMWDVA------GSSWQDGDDDRMARIAAGESSDPQLRVLQRLSL-DMDDRELAVAAFWLDHCDEAGYLQAPLAQLQLLASAqdIAADGVEAIRQQLLHGEPAGMAAQDLREGLQAQLRSLHGVVPARHLAARILDGALDALAAHDYPALARQHDAEIDDVREAVRLILSLQPRPGDSLLPERNAVVVPDVVAWHADNQWKVALNPATSRRVSINSQYEQALAET--SEAAPALREMLQEARWFSRGLSMRYDTLLRTARVIVERQAAFLVRGEEAMAPLTLKEVAEEIGMHESTVSRITTGKFLQTPRGTFELKHFFAVRL---EGASVSGQAVKAMVRRLIDAEPAGRPLADEAIAGLLSRQGVNIARRTVAKYREQLDIAPARERRRL-
116 UniRef50_C7R9H7 RNA polymerase, sigma 54 su... 428 1e-118 1 38.4% 1:474 1:490 MNPNLQLSLSQQLKLNPQLQQSIKLLQLSQLALQQEIQYQLDNNPLLTLLDDsePEAASSVSNSELDVSPLPTVFPNNRDTNNIGSLANLRHIDSGQHHSTYSIHNDGESNLENQFQEslREHLEWQIQMSSLSRADMEIAYYVIENIDDAGFLTVSHQEIIEQIKQdrFDPDEVEAVIHQVQQLEPLGCASSNLQQFLLLQlpQQSALESALELAQRLVHHHFDYLCKHHYSKLIKRLSLTQQEMDDALSVIQCLRSKPNHQYIGEVTEYIRPDILVYNLQGSWLAQLASNNAPQLDINHQYAQALRQSNKTCDKHYLQQNLQRARWFMQSIEARNDTLKRVADWIVQHQQNFFDCGESALRPMRLKDLAEDLKLHESTISRACSDKFLQSPNGIYELKYFFSNAVPSTQGGEWSSKAIKNKIKQYVKAEPSRKPLSDIELAKMLQEEGIAIARRTVAKYREALNILPSGQRK---
117 UniRef50_B8DD95 RNA polymerase sigma-54 fac... 428 1e-118 1 28.2% 13:476 19:447 ------------LNMTQQLSQSIAMLQFATADLVAFLEDKALENPLIEVIP---------------------------------GSDFATDFSYSSR-KSTGSSDDTDWLEQIADNKLTLADALKEQLHLMDVTQTQKIIVLYLIESLNDNGYLQIDLKDVSAALLMDDSS---VLEGLEILQSMEPAGVGARDARECILLQIERSP---DAPYIAYDVIQKFFTEFAEKKWKKIAAEMDVSLQDIQEVSDWIQTLNPKPGSEFESERVQYVVPDLILLQHEDEFAVSLAKQFLPQVRFQEAYYETMRATEEKDVAQFLREKAGEFDWIKKGIEQRENTLQRVGEAIVSHQKAYFLDNSAHLQPLTLKEVAEELGVHESTVSRAVNGKYMETTNGVYELKRFFASGLqnENTGDISSTTIKKLVQEFVAAEDKLKPLSDQKIVDMLAEKEIQVSRRAIAKYRLELNIPSSSKRKRF-
118 UniRef50_Q9K710 RNA polymerase sigma factor... 427 1e-118 1 29.8% 1:476 1:444 MEFGLFQQQTTSLVMTNELRQAISLLQYSTVDLAAFIEEQALENPLIELKDRSDRVLSEHIRMMREERPE---------------------------GEGTLDWSQSSPFDYLHVERLNLSDYLIQQARDLPLNKNEFEWLCYFIYSLRDDGYLSRSLHSLQADLGLTD---QEAEKTLYHLQHLEPAGIGARSLQECLLLQLQRKKQRDP---LAETIVEHYMELLAEKRWKMIADDLQISLADVQRVYDCIQQLDPRPGSQIGGEPTNYLVPDVTIDWVEGELTILLQDDYLPKITLNRQYQTLLTD-GEGEAAQYAKEKYHQMQWLVKSIQQRQQTLLKVTEAILRKQRAFFEEKEGALQPLTLREVAEEIGVHESTVSRATTNKYAQTPRGLLELKSFFVSSISSRFGegPSSDSVKKLVRKLVEEENKAKPLSDQKIAHLLKDqnVEASRRVIAKYRDELGIPSSTKRKRY-
119 UniRef50_B9JZG8 RNA polymerase sigma-54 fac... 427 1e-118 1 33.9% 48:475 15:472 -----------------------------------------------EPGTDSEAPPAPAPSDTLQSDWYEHGGDGDLNERLDAntDAPEMLGQWKSMPGAQGDGEGYDLDDFVAGKVSLRDHLGQQLPFVLSSASDRMIALALIDQLDEAGYLRADLDEVATQMG---ASRDDMERILAALQTMEPAGLFARSLGECLAIQLRQRDRLDP----AMAALIGNLDYLAKRDFASLKRLCGVDEEDLLDMLAEIRKLNPKPGAGFETDALETVVPDILVAPseGGWLVELNAETLPRVLVNNAYFTEIRRskAEGEQAFLTDCLQTANWLTRSLDQRAKTIMKVATEIIRQQDAFLRHGVDHLRPLNLKTVADAIKMHESTVSRVTSNKYMLTPRGLFELKYFFSVSIGSAEGGdhSAEAVRHRIRMLIAQESPENILSDDDIVESLKNGGVELARRTVAKYREAMNIASSVQRRR--
120 UniRef50_B2RK26 RNA polymerase sigma-54 fac... 426 1e-118 1 30.9% 3:477 2:485 --LKQTLAQRQQQNLSVQQIQQIKLLELPAIELEERIQKELEANPALEEGAYDEEVAGSA------DGTEDNLMGDDTSDLSLGDYRTEEDIPEYKLREIQDRNSRREEI-PFSAAVPSLNDRLVEQLKFLPLTDRQQQLAPYIIGNIEEDGYLHRDLEEILDDLAFreADKKEVEEVIGLVQSLDPPGICARDLKECLLLQLKRLP-DTTARQTALHILTNHYDDFVSKRFEQLQEGASLSDSEMKEAFELIMQLNPKPANGWGDDAEAtvHPDFIVERMGDDLVVSLTrrDIQPLRVSPVYQEMMQDYQSSAKNrfVKQKVDQAQWFIEALRQRRETLQRTMEAIVRLQDAYFRSGELalKPMILKDVADPTGYDVSTISRVSNSKYVQTDFGIFSLKHFFSDGTVNDKGEEVSTREVKRVLAEAIDSEDKRSPLNDTELAEVLAENGYRLARRTVAKYREQLGYPTARMRKEVV
121 UniRef50_Q2S3F8 RNA polymerase sigma-54 fac... 425 1e-117 1 33.2% 5:477 6:495 ----LELKQEqqQKLSPQQIQYIKLLQLDTFDLERRIEEELEENPLLEEGLGEEEQREEDEIDATAEEMENELETEDDEEDFDVEDLLNNTDDMYGYNASPGYQGDDEDRDRPMPADQSLPEQLQGQISFLNLDETDEIIADQIIGSIDEDGYLKREIDSILDDILFneIEEEDVQKVLRQVQSLEPAGIAARDLQECLLLQLRRMPEDVDGRDTAIAMLEDEYEAFTKKHFDKLQKRLDVDERELKTAFDLIrrLDPKPGEGEFSEETNYITPDFSVRYVDGEFVITLNGRNAPDLHVSRHYRKMLEKLKAQktEEFLKDKFSSAQWFIDSINQRRHTMYLVMDAIVQLQEDFFRYGEGHLKPMILKDIAEIIDMDISTVSRVVNGKYVQTEWGVYELKYFFSEGLETVDGEEVSNKEVKAELQRIVDAEDKTDPMSDQDLADALEEKGFKIARRTVSKYRKQLSIPVARLRREIV
122 UniRef50_Q6M9X4 Putative RNA polymerase sig... 425 1e-117 1 29.4% 1:476 13:489 MQQKQGMNLTQRLMMSTHMQQAIHLLQLPILELEPFIEEQVVSNPLLDIieKEGAFIEERTSASEKMEKEITIDDRDLAILNRLDEDYREHFAGSETTPMKRSSEEEkyLENSICADPSLLEKLHQQAIDTFNNQQELAIADILIGYIDANGFLKTPLQEICLL---HNLEESAVKDILREMQEFEPYGIAAASIQESLLIQLRCLHKE---GKLAYRLIKDYYNELLHNHIPLIQKQLKCSFSEIQEAIEkiAKLDLHPGTHFSAQTSQVLIPDVTLRQEGEKLIVDVDRDRAPTLKINRKYLRLLNDSssNETKQFIKRHLFSARWLVRNLQQRYSTIERIAEFLAVNQYEFFTQPDGQLKPLTMKTIADALELHESTIARTVSNKYINSPKGIFSLRSFFTTKYTSEEGEDLSAKTVKEAILEIISGENKLRPFSDEKISEFLKSKGITCARRTVAKYRQALDLGNTQQRKKF-
123 UniRef50_C3J8N1 RNA polymerase sigma-54 fac... 423 1e-117 1 32.7% 3:476 2:488 --LKQQQEQRQKLAIDVQQIQQIKLLEVSGEELADRIREELATNPALEVVEESEETTPEDNFLDEEPLSNTENEQEGLQDDfpEDYTADDEREDALREPPRPSAGDDDGPSYVQPNepSLSDELHEQLISLTLSDRELTIAEYIIGNLSDDGYLSASLHEISDALLFNeaSDAEIEEMIHRIQQLDPPGIAARDLRESLLLQLRRLPK-DEVHSLALSIIEGYFEDLAAHRYDRIIRGLAITPDRFSEAQRIIRQLNPRPASGYgeAAVARIVPDFTVHLHNGELQLWINDanLPQLGISPAYLAiiRSEAEKTSRAFASSRIAEARQFIDALKRRRKTLLHVVGAIVQAQEDFFRTGdqQLRPLVLRQIAETVALDISSISRITQRKYIQSDYGIYPLKFFFSEGTTGSDGEAVSSRSTKDLLRQLIEKEDKRTPLSDTELGALLSQEGIPIARRTVAKYREQLGIPIARLRREL-
124 UniRef50_A1TNE5 RNA polymerase, sigma 54 su... 421 1e-116 1 31.0% 3:473 4:463 --LALGARQTQTPHLSPRLQKAVQLLQMPTAEFIQSVMAAVDENPFL----------------------EEDEAAAPAAPGPEEGPAWTAAPGSRSPQAGSGDGLSMLDREPATA---TLQEHLHSQLRLLRLPDRAFLLASLVVEELSDDGYLLASLDSLCRDYgePEATAEELDAALRTVQSLEPAGVGARDLQECLRLQLPAV-ACPLQRALCDAVLARAAEGSGPQAMRQLAARLDVPAHAVREAMERLRHLDPHPGWRHGSQPVQYIMPDVIAHKARGQWTVSLNEAVMPRVRVHRQYQQLLQSPADAPDGPalAAQLAEARWTVRHVQQRFSTVLDVARAILRRQPHFLEYGPIGMRPLALKDIAEELGVHVSTVSRVTNNKYLQTPFGLFELKYFFSRAMTTPAGRDSSPTAIRGLVQEILAADDGQRPLSDVDIARQLERQGIRIARRTVTKYRQQLRIPPAEQR----
125 UniRef50_C5TQ27 RNA polymerase sigma-54 fac... 420 1e-116 1 33.3% 4:474 3:448 ---SLVLKLKQTQQLNQRLQQSLRILQMSGLELEREVEDWLLDNPLLERPETDEFADSGLNRTVTMP-----------------------------RAGQQLSGDDAEDIWSNIAEEEDFKHYLHAQVCEHPLSQVEAAYVHVLIDFLGEQGYLTDSLEEIIDHTPLemLDEEALQNAQDILQTFDPPGVAAADLTESLMLQLMRLPA-SPARQMAAHLVQSSLQDLGKNRKQNVLRFRKldSETIEAALDMIAELNPYPAYGFAstPTPYIQPDVWVKEGKDGWEVISNEAAWPKLQLNQEYCDLMKSAEEGALG--WKEKINEAKQRIDSLELRKSTVLRLAEYIVKNQEDFFIFGEIGLSPMLMKDAAAELGLAESTISRAANQKYLSCPRGLFALRYFFTQAVNadDGEGFSQGAIKAVLSQLIESEDSSKPYSDETLVKLLKQRGIEIARRTVAKYRESLDIPPAHKRK---
126 UniRef50_D2LXG7 RNA polymerase, sigma 54 su... 420 1e-116 1 28.3% 14:476 16:432 -------------VMTNELRQGIAMLQCSAMELQDYIHELLLENPLIEIE---------SFENNNWTAITHADESTSAIEHISKDF-------------------------------VDLKQFLQNQITFLDLDKSIKNIALYAAQCVDENGYLLHPPSEIAIELN---VSLTEVTKAIDIIQTLEPAGVGASSLQQCLLIQMRQQKERD---EQAEFILENYFEELANKQLKTIANKENISVLKLQKITDKIQQLNPKPGAIFSNEPCTYVVPDVSVKSTIEGFKLYIHDELLPKLTLNKNYQELMKNS-DTTINKYIQKKYEQYVWIKKCIEQRQKTLFDVASTIIEKQLDFLKGGAVNLRPLTLKTVADHLGIHESTVSRATMNKYIETPMGLYPFKYFFTASVGSNKGQTNSSESVKTHLKQMIDNEDKTKPFSDDKLATMIHeyAIAVSRRTVAKYRDEMNIPGSRKRRRF-
127 UniRef50_B0S8M7 DNA-directed RNA polymerase... 419 1e-115 1 31.7% 1:476 3:468 LGASLSHRQTQKLVMTQDLRQSIELLSLSTLELSDKIQNELLENPLLDELGVDEKTKMPELFSIDEVKRLEKLNH-----EKSTDVNWQDSYseGPRTYDSEASDRNQKYIESSTRGETLEEHLLNQLRLIKLTKLEFEIGEVLISMIDDKGFITDDLTLVAKEMGYPE---PKLRRVLQVINELDPIGIGAKDMQETLLIQGRILFPENTLLH---QLIGEFLSDLEKVDYKKIAKNLKITEEEILSLARLIKKLEPYPATTYQGRKIDYVVADVVVKEVGNEFNIFINDEWLPKLTIQEEYKELLGQKLPPKEKEYFQTKYSSAQWLIRSIQQRRQTLQRVVSCIIDFQVDFFRGGIGFIKPLTLKEVAEKLGLHESTISRITTNKYIQTTWGIFELKWFFSSGVKSAEGGKESSKKIHEIIRNLVKEEDEQNPLSDQDIVELMEKKGIEIARRTVAKYRKVLRILPSNERKRI-
128 UniRef50_A6DS74 Putative uncharacterized pr... 419 1e-115 1 28.1% 5:477 7:470 ----QSQTMRQEQTLAPHQLLSLEILSLPVMELQQKINEELALNPTLELDKALGENLAGDPLSESTEMTSEAMNAVDKDESLIGMVQLESYYGDSAFNPDQDKKR--QHYFDSLSCEQDLSSFLLSQIHQGEISDEDIEIANVIIALLNDRGYLNASIEEVA---FNAMCPLKDASRVLELLQTFDPPGIAARDLRECLLIQLK-----NEKGSLIYRLVDKHLEKLEKNKIKEIARSLKISPIEVQDLIEYLQRLNPAPGLAYSNKRPDFISPDIIFELKDDEIEVTSSKDFVPRLRLSENFMNMLEDPkeAETKTYLREKLAESRSLLASLDLRESTLLRISRLVARDQKSFFTGKSSSLQPVTMREISGELELHETTISRAVAGKYLDSPKGIFPLRDFFNHAVKVNEGEEMTAEGIQEIIREIINDEDPEKPISDGKILTQLEEMGINIARRTVAKYREAAGFSAASKRKMIF
129 UniRef50_Q0EWW0 DNA-directed RNA polymerase... 416 1e-115 1 31.8% 1:475 1:458 MQTKLAHKLGQRLALTPQLTQSLKVLAMNSMELDAYLEESIESNPMLDID-----FNATPTTDAAGEERALEISEQDQWRE-QGDNRWETMY-------ASASRDDYNEREPLWQQEQSLSESLHEQVDRQPMSEAEHRIAHMLIDSLDDDGYFRLGTDAFVREVADetTDAEAVDNVLhvIQQLDPSGLGARDLTECLLLQLDGSQEIDIW---VKRLLLHYSDKLLLPD-DELAAAADCDVETVQLARSRMRRLDPFPGHGLRGEENYYIRPEIVFRRnnNDIEVDIPGTGWRGIRLNEQWKEHEWKGKDKE---FMSQAMKEAKWLLHALDQRSETLMKVALCLAERQRAFLEYGILGLKPLTLQDVAEDVGLHESTISRVTNSKYAETPIGLIELRRFFSAGLPTRGGGTISVYRVQQRVKALIDSEPAGRPISDQAIADRLQAEGIEIARRTVAKYREQLGLPPSSQRRR--
130 UniRef50_C6VM89 RNA polymerase factor sigma... 414 1e-114 1 26.6% 1:477 3:441 LGPGFRQQQRqkLAMTQRLQQSIQMLQFNVEELRDFLTQKALENPLIDV-----------------------------------DTNWNNNH-ASLNAAKNVTTKADFIERVSTSNQHSLFEYLLDQIHLTMRDTHLRQIVLYLIEYVDVNGYLRIDERQVRQE---TKATPIELLDAITLLQQLDPPGVGARSLQEALMLQTE---NDDHAPNLAYIVLEESFDELVNRQWDLLAKKYQVTLADISSIYDYVRTLTPVPGAAIGQETTGYIFPDLVVTNQGGQLALRTASMAQPVVKFRSRYYQQMGQHDDQEVTEYLKEKKSEYDWIANSLQQREATIFRVGTAIIERQADFFLEKTTDLRPLLLRDVAQQLKVHESTISRSINGKYIQTDFGMFELKRFFTKAVspTGGKIVSADSVQHRIVTLIEQENKEKPLSDQKIVQILNAENVELSRRTVAKYRENLNIPSSSRRKQYL
131 UniRef50_Q5WDK1 DNA-directed RNA polymerase... 413 1e-114 1 29.2% 1:476 1:440 MEIGLLQRQTTSLVMTQELRQALHLLQYSSVDVIAYLREQALENPLLELHEQSTLSRERELVGTRPIRQPM------------------------------SSDDKQAALQNVAQRGRTLADELYEQLIESplSENDKCELTYLIGNLREDGYLGEALPQL---CADRNITESEGERLLAILQSFEPAGVGARSLGECLALQLKRMPDCHP---LAIDIVLNHLEALAARKWKQLAKQYGVAVQDIQHLYDQLKELDPKPGLRYSKETAIYVQPDVLMAKDegKLLVFMNDDILPAIRVHEEYDHLLKQQV--ETSAYAKQKRQHVEWLKRSLEQRQQTVRRVAEVLASMQADYLLQPSGVLKPLTLNDVAQVLGIHESTVSRATANKYAQTPRGLVELKTLFSGHVSKSDA-QLTNHHVKVWLKEMISVEDKSKPLSDQKLAEQLrdKGVALSRRVVAKYRDELGILPSSKRKRY-
132 UniRef50_A5WCB6 RNA polymerase, sigma 54 su... 412 1e-113 1 38.2% 41:474 123:578 ----------------------------------------LNENALDDTNKTEGDIEQNqtTTADNDLKAEASNLDTSLGELPIDTEWDDIYTHSPTGLAAPDTQ--GMSDYQGATSVSLQDHIRWQLTFSKLSSVQSLIADYLIDALDDHGFIQIDMAELKDSFDeqKIELEHIQQVIELIQSCEPLGVGARNLAESLQIQLRALDENTPYMRQALRLLDEH-QLLVSNNIKELMSRTGLKNNEISPALELIRTLNAAPGLAFSKAQPDydIPDVIVQLVHNqwKVELNPETLPKLRINQQYASLVKRGDDSPDNVYLRDNLMDARLFIRSIEERNHNLLKVATCIIKMQQDFLLQGATAMKPLILKEVAEEVGLHESTVSRLTTSKSILTPQGLFSLKHFFSSHVSSDQG-DVSSTAISAMIEALIDAEDPKKPMSDSAIKQHLQQQGIDIARRTVAKYREAMNIGSSTQRK---
133 UniRef50_A6L093 RNA polymerase sigma-54 n=3... 412 1e-113 1 26.9% 14:474 18:489 -------------TLSPQQILVVKLLELPTVELEERIHSEILDNPALEEGKEMPENEDDNTEYVENEDGNTDSNEDFSLGDYSNEDDIPDYKLQEHNRSKEGVAEEIPFSDAV-----SFYEILKDQLQMQELTPEQRDIAEYLIGSLDDDGLLRKNMESIMDELAIYrtTEEELNKILEIIQDFDPAGIGARSLQECLLLQIQRK-ADSPLKQIELDIIGKCCDEFTRKNKERIIQKLGITEEQYNEAVSDLTKLNPRPGSSLGekNMQQIIPDFIVeyEDDTITLSLNNRNVPELRLSRQFTELlqSKASKDALMFLKQKVDAAQGFINAVKQRQHTLLTTMQAIIDIQRPFFLEGDESlkPMILKDVAERSGLDISTISRVSNSKYVQTNYGIYSLKFFFSDGYTTEDGEELSVREIKRILKECVDTEDKEKPYTDDELAETLKTKGYPIARRTVAKYRQQLNIPVARLRR---
134 UniRef50_D1PTK8 DNA-directed RNA polymerase... 409 1e-112 1 27.2% 19:474 35:515 ------------------MLQ-VKLLEMPLAELEENVLSELDDNPALEERRDDPDDSGRepEDEPYEQKTEREEREEALNNALENLGSDDELPAPAGYTGSQGGSDADYEEIVWGDTRSFYDKLKEQMGVLVLTEEQRSVMEYLIGSLDDDGLLRKSLDTISDELAIydVSEEFIEDVLHRLQAFDPPGIGARSLQECLLLQIERR-QDSKLTRLMREVVEQYYDEFTKKHWGRIAQALQLTHEQADVVHEELRKLNPKPGASLGEtnTQQITPDFLitDEEGHVSFTINRGRIPELKVSPSFSDMVKTYRSSKHQmyAKQKVEKAQGFIEAVRQRRHTLYVTMKAIINWQKKFFQDGDEalKPMILKDIAEKTGLDISTISRVSNIKYAQTPWGTFPLRFFFTDGYVTEDGEELSTRKIKMVLKELVRKENKKMPFSDEALARELKKKGYPIARRTVAKYREQLGLPVARLRK---
135 UniRef50_A8UBI0 RNA polymerase sigma-54 fac... 409 1e-112 1 27.6% 2:476 4:448 -EQNYTQLQKQQLAMTPQLQQSIQMLQYNRKDLVEFLKQKSLENPFI-------SISVKSTPRNQGTSTQKYNSNQSRTDQTSNGSVWDTV---------------------ATTPAASLYATVIDQIHLSFRETALRDLIIWLAQYLDNNGYLTVSLED---ACTLTQADPLQLLDALTLLQQLEPAGVGARNLQECLMLQTERKE---EAPNLAYLILEEEFEAFANRKWECIAKRYAISLSEVQEVSDFIKTLTPHPGAIFSSTPTQYIRPDLSVKVTDeeIVVSSVKSGLPVIIFQKEYYEELKVLKDKEVSTFLTEKQSEYEWLKRTLIQREDTILKIGIAIVNAQKAFFLSEDHPIQSLTLKTIAEELSIHESTVSRAINGKYLTTEFGLFELKHFFTNAlsEDHDGAISSNQIKKEIQSLIQNEDTKKPLSDQKIVDILQKDGIKISRRTVTKYREALFIASSPKRKRF-
136 UniRef50_Q3J1U1 Sigma-54 factor (RpoN2) n=4... 409 1e-112 1 28.0% 1:475 3:436 MTPGMQlaQRQSLVVTAQLQQAICLLQMPNAELSSFIESQSEENPFIELRLPPAPV-------------------------------------PSAPLGKTAPEDWDRVAGLAADPGPSLYVHVAAEIARLGFDAPQAAAAQVFLDALEPWGWLGRPMEELAFRAG---LSLEAAEALLARLQKIEPAGLFARTLAECLQLQAEEQGLLTPLFAAVLAHLPLLAAADLKG----LCRACGCGMEDLKAVLRSLRGLNPKPGALFDAAPPPQRPPDLVVSRGAEGWRVDLNRSTLPSVVVRSDAAEGFART----AAPYVGERLSVAKWLARAVEHRNQTTLKIGAEVVRRQRGFLEEGLARMAPMTLREVADAVGVHESTVSRVSSGLMIATPQGTFPLKSFFTAALAAREGDTasAAAVRHRVRQLVQAESPDDPLSDDAIAKIISDEGVTLARRTVAKYREQLNIPSSVQRRR--
137 UniRef50_B0VJD8 RNA polymerase sigma-54 fac... 408 1e-112 1 28.0% 1:475 4:485 MEQYLSLKQKQELALKPKMLQSLKMLALPILELESYIKQELVNNPLLEldIDESNFEQSTPESSTPIEESDMSENheAEELTEILDTWNEYHSSY---EGWSSDSETDHTEALIRYEENGKEKFLEQLFPLELPENEIDFITDIVDSCDSYGFLPKGF-NIVNLAKKYLITAERAEGLHNIILSLSPKGISARNITECLMAQLTEEQKQN---RILVGLVSEHFENLIHRRYQKIASAYGVSEETILLAKEQISKLDPKPGLRILSTSAVYVFPDVTMKLIDGKYEIIINDHITPNIIISPRYRKMINRGydKETMQYVRERINSAKFLIKSIYMRMRTLERVSLSIINHQYDFFYLGTGQMKPLTYAVIARDLGVNESTISRVVKHKYAETPYGIYAFKDFFTSTAGFDDdqSVSRQKVKTHLIRLIETEDKKKPYSDQELVELLKAEGLNISRRIITKYRDELGILNSHLRRQ--
138 UniRef50_C9LBN7 RNA polymerase sigma-54 fac... 408 1e-112 1 25.9% 3:476 1:438 --MELKQELEIQARVSQEMVQAVSILQMTAWDLKEYVQEAMLENPVIELEETTRKQDNEevRKLEWMENGDYQNKVYYQQELEESNEF------------------------WEENEPDLREYLLEQMAFMDLDKKAASIIRYMIQSLDERGYLLENEEEIADILGR---SLEEIQRARQILCTMEPLGVGALNLQECLLIQLRKKGCTS----LACEIVENYIEEFGKNQLSKIVKKTGRDLKEIAQACEQIKEQNPKPAGYfaRPYKNYIIPDVIVVKLKDYFEILVNDYDSPEIFISPFYRQMMRE-QGEETGKYIKEKIRQAEWLKSCIEQRNRTLLQLTEEILRSQTEFFQRGKNYLKPMTQKEAAEKLQVHPSTISRAVQGKYLQCTWGMFPLSFFFSSGTDKG------AEYIKECLKRIIENEDKKNPYSDRVLAEKLQEMDIDISRRTIAKYRNSMHISEALGRKEY-
139 UniRef50_Q11E47 RNA polymerase, sigma 54 su... 407 1e-112 1 29.2% 4:476 6:450 ---NLGVGVRQSLTISREMVQAVEILQYDREELAAFLREQVEKNPLLRMKDRAEAAPGQGLGERWRRDSGD-------------------------RAFATGAAGDAPDIASSIGEEVTLSAHLHLQLALVKCTPEVRVRAGQVIDSLEEDGYLRQDPVKLAELLG---CSQDEMDAAIALVQTFDPAGVCARNLAECLQLQLREQGELRP----AMAALLTHTDLIVKGEVKRLAAICGVSESEVRVMLRKLRSLDPAPGRALDCTPVCPALPDVLVDLTpgALKVELNPDLIPKLLLDRSyaEVSSQIREKDEKSYLDECMRSGALLMRNLDRRFTTMLRICREIVRRQEAYFRHGLSHLRPLTQGEIAQELGIHESTVSRATANKYILCSRGLLPVKFFFSEagTGTDGLGHASETIRRRIREVVDGETPEKILSDDVIAALLHGEGIDIARRTVAKYRSQLKIPSSADRRRL-
140 UniRef50_B0P364 Putative uncharacterized pr... 407 1e-112 1 27.9% 1:476 1:432 MNFSPKTTLVQTQTLSQTQLQSLKILSLDNFELNNFLQNEYIENPLLDYNENSNLPS------------------------------WNQYVSYS-----SAKEDEDIYKEIPDFSENGIKEFLLDQLNQRNFSDLQWTAMQTMIDCLDDCGYFKLSLKDFSQWFG---IDISTVKYCLDILSSLEPLGIFSKDLPHCLLRQLEARQELTPELN---QIIRYHLDDIAAGKINTITQKLSMSTQDVRKCIAKIRELNPRPISGFLTNSTDYIVPDILIDYQDSSWIIRLNDQWIGNYSLCDYYLNMMHTSQSPELKEYFRKKYNRVQLIMHSIEQRRETILKITSAVLERQKDYF-TGNSTLKPMTLADIASDISMHTSTISRGIKNKYLQYPFGVVYLKDLFTSSAGKKDNN--SPITVKKQLKAIIASENPNKPYSDSTLSNLLKQKGIKISRRTVAKYREEIGIKSTYNRKIY-
141 UniRef50_B1HSZ7 RNA polymerase sigma-54 fac... 407 1e-112 1 28.1% 1:474 1:423 MQLSIKQTQELQIVMSAQLRQAIELLQYSTQELEQYIREQELVNPLIELSEP------------------------TFKEHLQISKTCGRHYNNWHLSTK---------------CEKNIRDELFQQVRLTFDNEKDIQLLKHIIYHLDDNGYYEQSIQSSYNDL--------EIEKGIHLLQTIGPLGIGARNLKECLLLQTIYGPNS---PAHADTIISNYLEELAHNNWKKISKELDISLNDLQIIYLFIQSLQPKLSSLFYQELVHTTIPDIIVDIVDGGITFSLNDYYLPKVSIHADYFPYIK--AHSSEKSYFKKHLADYHWLVNSIEQRRNTMINIMKALIEKQRKFFLDGLDAIQPLTLREIADQIDVHESTVSRITTNKYVQTAFGTFELKELFSSKLSTANGHSVSQIKVKSLLSDYIKSENKAKPFSDQKIAEYFNSagIEISRRTIAKYREDMSIPSSARRK---
142 UniRef50_D1W3B9 RNA polymerase sigma-54 fac... 406 1e-111 1 26.7% 19:475 83:556 ------------------MLQ-VKLLEMPLTELEESVNAELDDNPALEKAEGDeeTDGRDEREEDFAERTEREEREEALDKALENIGRDDEMPDAYGAYHPQDNAD--YEEIVYGDTKSFYDKLKEQMMMENLTDTQKDVMEYLIGSLDDDGYLRKDVESISDELAIydVTPTQIEEVLYILQWFDPAGIGARSLQECLLLQVERRP-ESKLKDILQQVVTRQFDAFTKKHWDKIQANLKLSDLQLRAVQEEIRKLNPKPGASMGEtnVQQITPDFIivDDNNNISFTLNQGKIPQLTISPSFSDMVDTYKnkEALLYAKQKVDKAQGFIDAIKQRRHTLYITMKAIIDWQRKFFIDgeSDLKPMILKDIADKTELDISTISRVSNIKYAQTKWGTFPLRFFFTDSYTTEDGEELSTRKIKLALKEIIDHEDKRKPFSDEALAKELKKMGYPVARRTVAKYREQLGLSVARLRKE--
143 UniRef50_A7B1W8 Putative uncharacterized pr... 405 1e-111 1 26.5% 3:474 1:439 --MGLELKVEQKQRVYQKQIEQARILQMNAQEIAVYIQEVALENPLIEVEELAEAPLEELVRE-------DMRKSDETGVTASEDTDW------------SYAGGHQLLEDWWTLQEESLVDIIHQQLLTMPIGEKEKKIVEKLAGSLDSRGYLEISVKKLAEYI---PCSVRELRSALEILKSLEPAGIGAADLKECLILQLKRQKDS----RLAITLVKNYLEDLSKHKISAIAKELGEEEAAVRDAFSRIRTLNPKPGRIYGRNTGGYVIPDIIVSKEHGKYIAELNEAVYRELRLNEFYVKL-RDSKEAEVREYIMQKQAQAEWLRACIEQRSHTLQRIADILVDFQRMFLDSGKD-MKPIRQKDVAQIMEVNESTISRAVKGKYLQCGWGVYALSDFMPKGT-----EEVSSDSVKLMLRNFIQSEDKKKPLSDQKLAQKLGEEGIQISRRTVAKYRMQMNILDAAGRR---
144 UniRef50_B3ESG5 Putative uncharacterized pr... 404 1e-111 1 29.5% 3:476 2:479 --QKLRLTQKLTQKLTPQQIQLVKLLQIPSIDINARIQQELAENPVLEPANDNVEY-LQEAEDNSAIDTMTVGYIDELPQKNYL--TYRDYEAEERWLRKEASVPNRYSLQEQLLEQL----------EMLRLDEGQHKIGEYLIGSLETDGYIRRDLAALANDLLLTqtNETEVETILKKIQTFDPPGIGARSLQECLLIQLNRQP-SKPVRNMAIQILNQTFELFTKKHYSQIIKKLAIEDQElkEALELIAKLNPKPGGTLGSdqNQILYPDFLVTKHNQQLEVRLNAYNTPELRLSRSYIHILETSQkqAASSFVKQKAESAKWFIEALNQRKKTLLRTMQAIVQLQYDFfeEDESKLKPMILKDVAKIIEMDISTVSRIVNNKSVQTQFGIYPLKFFFTEAISTTMGEDVSSKAVKQALLELIQQESKQQPYADEQLTAMLVDKGYHIARRTVAKYREQLNMPVARLRKEL-
145 UniRef50_A3V230 Sigma-54 factor (RpoN2) n=1... 401 1e-110 1 29.9% 1:475 1:437 MTPNAHLAQKQSLVFTPQLQQAIKLLLFNNLELSNYVEKIAEENPFVEVELPEMRVPAPRV-----------------------------------MASSQRDPSFDPISLLADRSTQGFAAQLFAQVDDILTEQSERAIGYAIASHVDPSGWLSIPTPLLADNLG---VDDACVCTVLRKLQSAEPAGLFARNLAECLVLQIVADDPDRS----ALLIIMQNLVLVERGAIPELRRKTGCSAEEVKRLLRRLREFNPKPGLALSDDVMMSArpDILAArqDGEWYVELNGATLPILKVDEVEGRRVRkvKHDSDQAYVRDTLGNARWLKRAIAQRNETSIKVAAEIVRFQKAFLEHGMQHMRPLKLKTVADAVGLHESTISRVTSSLMMQTPQGSFPLKTFFSTAIDLDgdEGVSARMVREKIRNLIGAENPSGPLSDEFIAQSLQCEGLSIARRTIAKYRKLDKIPSSSQRRR--
146 UniRef50_C4GJ01 Putative uncharacterized pr... 401 1e-110 1 32.5% 2:475 3:453 -STNIQLKLRQTQQLSQNMQQSLRVLQMSGIEIEREVEDWLADNPLLDRVEQPEKTYEPPQTTADIAKRGVSL------------------------------DDDDSSAWENLAQEETLNAYLHKQVAEHPLTPSEAARVHILIDFLDDKGYLTESIEEIIEHTPLemLEEDDMEIALEHLRAFDPAGIATPDLTQSLLYQLDRLPL-SEARRCAAQIITRHLDQITQNTPKNLNRFSKlsETVLRDALEIITNLRPYPSYGFASEEpqYVRPDVFVQKNdgEWYAISNEESLPQIKINTEIIEALQEESN--LDPIWREKINGAKQKIDMLQQRKSTILRVAEYILAHQQDFFYFGEIGLVPMLLKDCAKHLELAESTISRAVSNKYLACPQGLFALRYFFSQNAasETGNAISANAIKSVIAQIVEHEDKTKPHSDCSLHRLLQQQGINIARRTVAKYREQLGIPTVQQRRE--
147 UniRef50_A4SER6 RNA polymerase, sigma 54 su... 399 1e-109 1 32.2% 6:477 5:447 -----RLQQKQKAQLSTQQIISSQLLQLPLANLEQRIYEELQENPLLEAVEAEKENSLDERERSSASSGGQSSGEH----------------------------------FFQAVQFDSFHEILLKQLALqnIERGEVEVAIEILGNLDSDGYFVEDPEVIVDSlaGLEVDGDEVEAIRLKILHLDPPGVAALDLRERLLVQLhrGKASVRVRGVAEAILIHHFDDFIHRRFERLVKKLPHQPEEIDAAINAIVALDPHPGI-FQDEGGHYISPDFLVSFDNGELTASLNDRSALSVKVSDRYRDIlkRQGSKEDLQFIRRNMQRANDFASALESRRQTLLKVIESLMKHQYAFFADGPAFLAPLGMKTIAADTGLDISTISRAANSKYVQTRFGVFELKYFFTGAIQTDDGEDVSSKVIKQHLADMIEAEEPSKPLSDDRLTAMLSEQGFQIARRTVAKYREQMQIPVARLRKKIF
148 UniRef50_C2ME31 RNA polymerase sigma-54 fac... 399 1e-109 1 30.0% 14:477 15:491 -------------TLTARQIQQIQLLELPVTELEQRISAEIERNPALEEAYTARDDSNESNATNEQVDSSLSQSDQDRLEARNEFGNDDEIPAYRLRMIAEREQQREEIP--FAAHGLSLTDYLDNQLSTLELTERQQLLVPYIVGNLREDGYLDRSLPLIAQDLLLKeaSEQELAELLQIIQSLDPPGVGARTLQECLLLQLHRMEQSETVVN-AEKIVSSYFDDFAYKRFERLTKR-GFDQKQLEAVSSLIHQLSPKPGNGFDSSAETlvTPDFIITEHEGELTLTLTdrEIPALTVSPSYKQMIADYRdkETIQYTRDRVKDAEWFISALQQRYDTLRTTMTIIMTLQRDFFLSGDidLRPMILKDVAELARLDISTISRVSNSKYVQCQWGIYPVKFFFSESMQAKDGSDVSTKVIKDCLKQIIDGEDPRQPLTDDQLTEELSRQGYDIARRTTAKYRQQLGLPTARLRRKLT
149 UniRef50_Q01194 RNA polymerase sigma-54 fac... 398 1e-109 1 28.4% 1:475 1:429 MDMMQFQRQTTQLAMTQRMQESLRILQMSNADLADYLTAQALENPCLEVRVPEGASVAPAL-----------------------------------PSRGIQAGLDRDAFATVEGQPPSLLAHVEAQIDLAFFDPGDRRTALAFAEALEPSGWLGQPV---SEVAAAAEVEEEEALVILERLQALEPAGLFARSLAECLALQLEDLGLLTWELRT----MLDHLPLLAEGRIADLARRCDCEPEHIRENLALIRSLSPKPGEAFAADRTPIQPPDVRVLRGPEGWEVELTRAQLPRIRVSE-----AGDTGDRQADAWLARARSQARWLERAVERRQATLLRTAVCLVRHQADFLDQGPRALRPLSMEEVALELDLHPSTISRATATRLIETPRGLIPLRAFFSRSVSSDGPEaqSQDALMALVREIIAREDRTKPFSDDAIVKQAKLAGAVLARRTVTKYRETLGIPSSYDRKR--
150 UniRef50_B2UL79 RNA polymerase, sigma 54 su... 396 1e-109 1 30.2% 2:474 3:463 -EVSLQHGMTRQMAVSQSMQTGMQILQASALELRQIIRQALETNPMLEELPDASPEALEDGPDGDA--------------WNEREDGWNEFTAEGRLSGDAAARRDFMYES--VVAPESLKTHLMDQAQHSALTGRARDALFLLIDALDERGFLTESPQELEEQ---GCFSMRDMEEALAALREMDPPGVGAANLRDSLLIQLEQRGLK---RSLAFRLVKRCWRELAAHKYEEAARLLDVEPGAVAAALEVIRSLTPDPGGAYAPGGNPHLLPDVIVEEGpgVLEVILTSEYLPRLSMNERYMELMAesGSRELRQYLRRAFREGQELLRALDMRQETVLRLARVIVRRQEDFFRSGPSRLKAMGMEEVAEEMGVHVSTVSRACRDKYLLCRWGMKELRSFFSAGVPSEGggAVAAGAVQELMRRLIAEEDSSKPLSDAGLAAALREKGVNIARRTVAKYREQMKILPASLRR---
151 UniRef50_C8WN98 RNA polymerase, sigma 54 su... 396 1e-108 1 29.7% 1:475 11:474 MEARSNVSVRTKQHFAPTAIQGLEVLSLPVARLDAYVRDLVERNPLLDFDYDHGSLSFEELPDEEDGDAAADAETAAEG------------FDARPPSAIAWDARGFDLARLRdsQTETLHSHVRMQLTGVRVGEEDRALLDALIENIDDDGYFSGSMHALCAEAGR---SIEDGQRLLELVQQLSPRGVGARDLAECLALQI---DDGLPYADVIRDMLRTGLDDLAENRTTKLMRVYHLTIDDLAAIREVICTLDPRPGSSFSQRktVYVIPDITIRRDGTAFSVQVTGELSETLVLNGSYDRMEQRGgdDEAREWLHEKRAEADAALANIDQRRQTLHRFGVYLAEVQYDFFMGGEARMRPLTMQQAADALGVHVSTISRTVQDKYALTPWGVFPLKHFFSSSvaEERRHALSSLAIKDRIKDLVAQEDRRTPLSDATITAILNGEGVDIKRRTVAKYREALGIGRQSQRRR--
152 UniRef50_D1CE57 RNA polymerase, sigma 54 su... 394 1e-108 1 28.1% 1:473 3:478 MQMSQEQNQAQEMTisPSLIEANYILSLSLPELRQTILNELSQNPALELVDHegEVMVGGKCENCSREDSKTDHTDTVNEDL--DSLYYESYSATSRSLVS-DDEDDFDPMSIVASEQDFHESLRSDLH-SILPEEDYEIADYLIESLDENGYLRQPLDAIARELGR---DVQRVEWVLQRLQEIAPAGVGARNLQECLLLQLRYLEQEGEipEYVRAILENYIEELGSHKYGYIARKLKTSPEKVAEARQFIksLDPAVGRTwsPSRSTYISPDVIIFEREGKLEVEVVEGRQFELRLSPAYQQIAKDLesENERTHIKEYISRTKMFISNVNQRRKTIYKIASALVELQEDFIRYGVRHLKPLTRAMLADYIGVHESTVSRATAGKYVMLprKVIPFSDFFTASLS-----------IKDVIKEIIMSEDKA--LTDRQICDKLRERGIRVARRTVAKYRAELGILPSTLR----
153 UniRef50_C9LEP5 RNA polymerase sigma-54 fac... 394 1e-108 1 29.5% 15:475 17:491 --------------LSAVQVAMARLLELPVMDLEQRVRNELEDNAALEEvdKNEEDMAAETTEADDNESETAEDEPHADDETADYLTEDDIPDYLLRQRNEAEEREVQLAATNNA-----YDELYRQIGEHDLDEQQRRIMEYLIGSLDNDGYLRKDLRTIGDELAIydVSEEELERLLHLLQRFEPRGIGARDLQECLRVQLESPEFKSSFKALAIAIVDRCFKDFTYHHWNTIKVRLKTDDESLQQAAQLIRRLNPKPGSALNETtaPTAIPDFYVheDDGSISVRLNNGDVPELRVSKAFKDTVREFGGHKDLnyARKKVGDAQLFLELINRRRKTLMGVMRGIVERQRDFFLNDDDelVPMTLRDVAEKAGVDISTVSRVTGSKYVQTQRGLYPLKFFFSSQFTSGEGEELSSRQAKAALREAIAAEDKRHPLADEALTIVMKEKGFPISRRTVAKYREQLGIPKSGLRKQ--
154 UniRef50_C0QWG2 RNA polymerase, sigma 54 su... 393 1e-108 1 27.3% 2:473 9:434 -NTSIRTAIKNDLRLNYQTRVWLDVIALPAIELKEKIEKAMEENPFLEY----------------------------------------DFNDNYSKPSSAGSDINSIIENTVENNKESLFSHLKSQIDITFNDKKEIELAEQICSFINEDGYLTIESDEISNILN---ADIKQIEKIISIIKTFDPYGVGAKNINECLSIQLKMKKKekEIYDTAINIVENYLDELSKKNYDKIALNLNIEVNTVLKALKLIQTLEPYPAREYDTSSVKYIVPELFIFKENDNWFVKTDETFIPHLKISKKYIKLLDREESKDSINFLKEKKKEAESLINASNDRKKTLLKIGEALLKFQINFFEYGKEFMKPLTLKDMSLEVNLSESTISRIANGKYLNTVWGTFSIKYFFSRAVN----GGLGSRGVKEIIKRII--ENSPAKLSDEKIRLILKSEGIDISRRTVAKYRKSMNIFSSRNR----
155 UniRef50_B0NX39 Putative uncharacterized pr... 385 1e-105 1 25.7% 1:474 1:428 MSYEMKLEQGLSQQLNQFQVQSLKILSFDNYELEKFLQDEYAENPLMEHKESG-----------------------------------KEFFTLHGNAGGYQDIEQSDIEDKKIEDPEAFF---MEQLNAKDYTKKEWNVMKYMAQCLEESGLLLVSTKEISHKLG---IEEKDCERLLDHLKQLEPAGVFAESVSECLLLQLEREGILNDDL---RYIVENHLEDIAMGHLSTVSRALDIKTSQVRKYIFKIQELNPRPLSGYTGGTDQYIVPDILMEKDGEELKIRLNDDWIGDYSINDYYVKMMEQAEDSELKEYFRKKYERCRFIITSIEQRRETMLKISKAILDRQREYFMK-HKQLKPMTMQNIADDIEMHVSTVSRAVKGKYIQYPGGTIGMRDIFNN-TQTFGDQDSTTEEIKEEIRRLVKEEDKKKPLSDSKIVSLLEQNNMKISRRTVAKYRAQLGIAGTTQRK---
156 UniRef50_C2ECN0 RNA polymerase factor sigma... 384 1e-105 1 27.9% 13:475 29:448 ------------LAMTQQMQQSIRILKYGSEDLHNFLSNVELENPFMIVNVSHSYVTGGLDHQNEHDIAEFAVEKKA----------------------------------------QSLYDYLMDQVKLTMRKTPIRDMVVYFISQLDQNGYLKADLEKLSKEKGIDKV---LMLDALTLLQQLDPPGTGARNLQECLILQVQ---YDSSAPLNAEKILKEDFEDFTNRKWSKIAKKHCISIGDVQKILDYVQTLSPAPGAIYDQSEVGYIEPDLVIEKkdGSLEVKLTKESNPEIRFKKEYYESLKNSSDKHVLDYLKEKRNEFEKIQEDVLMRGNTLLRLGRLIVERQHDFFTESNRPLKPFLLRDAAQKLQLHESTISRAVSGKYLLYEGKVMELKEFFSRAVsgENGENVSADEIQQKIRLIVEKEDKKNPLSDQKIVDKMKEEGLKVSRRTLAKYRERLGIPASSFRKR--
157 UniRef50_C9RQK6 RNA polymerase, sigma 54 su... 384 1e-105 1 29.7% 1:475 1:543 MNLGMQAnqTQEQTLSPALLQSVKMLQKTSQELETAIKEEVEVNPLLEvvDKDPEELDPRADSDDLPDDIEDMARGSLDDTADVDsnWDSYLGDGTSYdsGGKDPDEDWDRPIKDVGKSLQEQLEDQLRLWNGTRElrKLVQYLINSINDDGFLcrDNESEAMIVQSDDKYIDEIERVlhVLQSFKPSGIGARDQRECFLIQAYAIPNF---PSLAIRILEEEYENLLQLRYAKIAKALNVSADEVKTAVASLSRLRPHPGFQLSHSYSHIINADLKVVEKKGNYEVVCFKTKMQklRINQTYKAILTdsASKQDKEYVKAQLAKATDLIKAVDNRFSTIELVMRAIVKRQRGFFENGPAFLKPMILQDVADDVHLAVSTVQRATDQKYVETPYGMYELKQFFTSGvsAPDAEEVGSAQIIDAIKTLIDEEDKSSPLSDQDISDELLKQGIKVARRTVAKYReeLKILPKNQRKR--
158 UniRef50_UPI000169A703 RNA polymerase sigma-54 fac... 382 1e-104 1 79.8% 1:351 1:351 MKQGLQLKFSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDLHEEIDAKETVDSESLDTREALEQKDMPEELPLDATWDEIYTAGTPSGMGNDYSDDELPVYQGETTQTLQDYLMWQVDLTPFTETDAAIATSIVDAVDDTGYLTVPLEDILESMGDENVALDEVEAVLKRIQHFDPIGVAARNLRECLLVQLSQYAKDTPYLAEARLIVSEYLDLLGNHDFRMMIRLSRLKEDTLKEAIALIQSLDPRPGQSINTGESEYVIPDVLVRKEKGIWTVELNADSIPRLKVNQQYAAMGNSVRNDSDGQFIRSNLQEAKWLIKSLESRNETLLKVARCIVEQQ------------------------------------------------------------------------------------------------------------------------------
159 UniRef50_B2V793 RNA polymerase, sigma 54 su... 382 1e-104 1 29.9% 1:475 1:437 MKQNLGLKLQHKLNLTLSLKHQLNIMVMPKQELLQEIIHELEENPFLE-------------------------------EEIHINNDYQEKLTDLSVSYSE--DEEELNPLNRLTYKPSLLKTLEIQIDL-EFDGKEKEIALDIIDNLDEKGY--ASQESLNEIASKYNVDIEAVEKIRKKLMKLEPTGLGAKSLTEFLITEYREKFGRDSI---AEQIIQEDLNKIKDKEY--LLKKYQIDEEALEEIISNIKALRPYPLYGYEDFEAHYVEPDIFIYETNDkfEIVINEQDLPKLNLTNQYKKILNRKdnEETKKFLYEKLQKAIGLIRGIEQRRENLKNLVESLVNQQKDFLLYGKEHLKPLTLKDVSQKIGLHESTISRIVSNKFAQTPIGVLPLKAFFSNKVSKESGN-ISSDRVKYLIQNLIENEDPKKPLSDNDIVNLLKKEGIHIARRTVTKYREELNIPDSRKRKK--
160 UniRef50_C6JNV9 RNA polymerase sigma-54 fac... 381 1e-104 1 26.1% 1:475 16:426 LDFTLKLKQEMKLSLTQEMKISMNILQMSSSNLKDFIEKEALKNPMLEV-------------------------------------------TYSTPSSKYNSDEETTSPFDFIIEEKTLIDFLEEQLGYLKISPKIKSICEYVINNLDDRGYLSISKLEIKKAL---KISTAQLKEAMDIIYTLEPAGIGAENLKESLKIQLITKDIID---EKLFTLIDDYLEELGDRKYSLISEKLHVSVEQIEDYLDIIKSLEPIPARGYFVGntNYVVPEAKIEIVDDELTVTLNEEAIPKIKINSSYKSTNSLSD--------KNNMYTAINLIKSIEKRYITLERVLNQLIVKQKNFFFRGKDFLQTLTLKDIAKELNLHESTISRAIRDKFIETPQGIIAIKSLFI--LNSECLE------IKKTIEELIKSENKSSPLSDEKISLYFKNKGCSIARRTIAKYREELGIPSTRERKR--
161 UniRef50_B5J6Z7 RNA polymerase sigma-54 fac... 378 1e-103 1 29.7% 1:475 4:440 ISISTNISQNQSLVFTPQLQQAIKLLLLNNIELSSYAESIAEENPFLEIDLPEVRMPASQGANV-----------------------------------AQKNSEFDPISLLPDKAGESFGARLFAQVDDTLKDQAERAIGYALASHLDPTGWLTTPLSLLAQNLN---VEEKYVAAVLSKLQRAEPTGLFARDLSECLSLQI----PTTDLDHTSMGIIIANLALLERGLLNEMRRKVGCSADELRYFLRRLRGLNPKPGLALSEGDQAPIrpDLLTAKgnGEWFVKLNGSTLPIIKVDEAAGQRVRklKLEIDQIYVRENLGNARWLKRAIAQRNETSIKVAAEIVRIQLPFLEHGIKHMRPLKLKTIAEAVGLHESTISRVTSALMIQTPQGTLPLKTFFSNAIenGSDEGASARMVREKVRTLIGQEVPIKPLSDEFIMQKLNSEGLSIARRTIAKYRKLDKIPSSCQRRR--
162 UniRef50_C1QAL1 RNA polymerase, sigma 54 su... 378 1e-103 1 27.1% 2:473 10:436 -NTSIRTAIKNDLRLNYQTRLWLDTISSSAVELKEKIEKAMEDNPFLEYD-----------------------------------------IKDKYTSKSSSSDIDSIIENTAANGKESLFSHLKSQIEISFKSKKEMELAEQICSFINHDGYLKITSGEMSNILN---ASVSEIEKIVSVIKTFDPYGVAAKDINECLSIQLKMKKKEdfLYDTAIDIVENYLDKLSKKDYDYIASSIGVEKDTVIKALKLIQTLEPYPAREYDTSAVKYIVPELFILKENGIWIVKTDETFIPPLKISKKYIKLLDREKSKDSINFLKEKKKEAESLINAANERKKSLLKIGEALLKFQLDFFEYGKEFIKPLTLKDMSLEVNLSESTVSRIANGKYLNTVWGTFSIKYFFSRAIN----GGLGSRGVKEIIKRII--ENSQAKLSDEKIRLILKSEGIDISRRTIAKYRKSMNIFSSRNR----
163 UniRef50_Q5FPW5 RNA polymerase sigma-54 fac... 378 1e-103 1 32.3% 3:476 4:434 --PGLIQRQSQSLVMTPQLRQAIALLQYTQTDLAQHLRQVCETNPLLILEPGD-----------------------TVPEAVPASEDFHDDDPDRFTTASDRPE--------AAAPPPSDRDELILQIR-HSIPPEEQHAAFHLLDSLDETGRLPVSVTDLAAELGM---DAPKLEAIRQTLMHLEPAGLFARSLEECLAAQLRVRNRLDP----AMQTLLDNLDLLARRDWRRLREKCALDQDDLLDMLAEIQALDPRPGLSLPPPAPPIEP-DLIVRPNGTGFRLTLNTRLLPAVRLDDTLRAQI--DGHTEAGRMLLAYAGEATALIRALHSRKQSLLNVGRAIVQHQAAFLRDGPTALRPLTMREIAERTELHESTISRIVSSKYIDTPRGTVPLKLFFSTALASEDGTTQSAHAIQHRLQALVAAE-GDSVLSDDALTGLLQKEGFSIQRRTVAKYREGLGIAKSSQRKRL-
164 UniRef50_B4S818 RNA polymerase, sigma 54 su... 377 1e-103 1 29.5% 3:477 2:489 --PDFKLQQSQRAQLSAQQILSSQLLQLPLLNLEQRIYDELQENPLLELIEEKNESVDETGEQSGDDGDddSVDRFEARDEKRPEKNEQPKESQEGVLHFTVDTTPKENF-IQAIQQDSFEERMLRDLSLReiGSTELLIASEILGNLDDDGYLQDGLDIVADGLLTndVEPRDIQRVLHIIQRMDPPGIAVASLRERLLVQLELNQAASGSGgiAKKLLDSYFDDFLNNRYEKIIKRMQIRPEQLEAAIKEIAALDPHPFVVY-QDTGDYIMPDFIVTYENGRLTAALNDRSNLSVQVSDAYRDVLKNRkpRGDKQFVRQKLNRAKEFASAIEQRRHTLLSVIDALMQFQYEFFVSGPSMLVPLGMKDVAEKSGFDLSTISRAVNGKYVQTRFGTFELKYFFSGGTTTDEGEELSTKIVKQYLQEMVSAEDSKKPLSDDRLAQMLEEKGIRIARRTVAKYREQMQIPVARLRKKIF
165 UniRef50_C8PMB8 RNA polymerase sigma-54 fac... 374 1e-102 1 27.3% 1:473 4:498 MGQTLGQRLEQR--MSQSQIQSLDVLAMPTLELRERIAEELVENPALELIRSSGKPAVPEAERTPQKERNVP--------------YYRDDRTPSAVSLEASDAFQTFLENIPAPQRQSLQSHLLEQLFVHKLDPLTTSFAERIIGNLTTDGFYVVPLNELFkeLSAKSADKdkISHALSIVRRLDPIGCATQDFKQSLLVQAKILFHddPVYAYTIDILTNHFAYLEKARPYSLVRayKLTQENAEDILSLIASLNPFPGRALAADVteYIIPTAFIERNGQEFTVRINNLEIPLLTVSPEFQSLISHTKDAAAKTYIKEQMQKAKAFIGSLNQREKTIVAVLGKIVAVQEAFFLTGDkrLVPLTQQQIAKELDIHESTVSRTVAGKYVQCQWGTFEIQYFFTNSVAVQPPPGSSseGVKDCIKELleHAAKDAKLSDQKISDLLQArgISVARRTVAKYRKELDIGSSYSR----
166 UniRef50_C3WCT3 RNA polymerase sigma-54 fac... 374 1e-102 1 26.5% 1:475 1:413 MDFSLKLKQETKLILTQEMKTSMNILQMSSSQLKEYLEKEAVTNPAIEIT----------------------------------------YNNYTYKSYNPSSSEDNFSPLDLVSEEETLFDYLEEQLGYLKISSKIKNICLFIVNNLDARGYLATPKLEIKKLLN---INNQQLKEAFEIIYTLDPIGVGAENLKDCLKIQLRSKNIID---ETLFSLIDNYLEEIASQNFSLIEEELNITKEDILDYLDLIRTLSPIPARGYvsTSNNYIVPEAKIEIKDNKLTFKINEELIPKININSSYSDNPSANKNS---------IANAINIMKCLEKRYQTLNGILELLIIKQKDFFFKGENFLHSLILKDIANELNLHESTISRAIKDKYLDTPQGIISMKSLFVI--------DSSTIIIKKLIEEFITEENKKNPFSDEKLSLLLKEKGYSVARRTVAKYREELGFGSTRERKK--
167 UniRef50_D2RMY8 RNA polymerase, sigma 54 su... 373 1e-101 1 28.2% 1:475 1:444 MGmkLILAPQQKQQLNLHLVQQMKLLQLGALELEQYVREAVEANPLLEFPGEAEGPAWQETAQEV------------------------------YRRKRTRDQEDEPLPDPVAnqEKTLQQVVEEQLGCLRLSGVDRSLACYMAGTLDSRGWWTESVEETARAFG---VTEDRVLQVLQQIQQLEPAGIGARDLSQCLLLQLENQGKE---ADLTRRIIREGLDLLARNQIPALARKFGCTQKEILAAKARICVLDPKPGARFAggPVVYQREDARVEDTGEGLKVTVYDTWGRKFVLNQEYLDWAGEQGNGQVKAYLKEQLGKARQLQQLLKERQQTLLVVFQALVSHQEPFFRLGPGHRQPLKLADLAEETGLAVSTVSRALQHKVIGCRWGSFTAGSFLQGQASSHEQGAVTEERLQQLIRELIEGEDKHHPLSDQAICRALEQQGVQVARRTVNKYRVKMGIGDKSARKE--
168 UniRef50_A9B5F2 RNA polymerase, sigma 54 su... 369 1e-100 1 28.3% 1:473 7:461 MSPEALAQQAMSTKASPALIALNNMLVLSTHELQQLIQQELEENPALENVDLEPD----ETCSRCGRPLIEMLCLYCVHEDQRLAEAERGDYTAAG-------EDDEFDPLMMVATPAQLSEVLLRDLRAS-LPEQDYFIAEYLVGCLDDQGFLDANTGDIAATLT---IDEERVIAVLLKLQDIAPVGVGARDVQECLLLQLRRLDEEDVRHPYVERVITEFWNDLAEHRYGAIAQALNAEYDAVVEVREFIrhLRPYPlsGEGSARTNYIMPDVIIRENEGKLEAEVLMSDRSFLRINPLYQSLVKRGrsSEDRDHLSQYVARAQMFLTNIRQRRETIRRISEFLIETQEDFLRQGVRFLRPMTRAEVADGIGVHESTVSRATANKYVQLprSVIPFSHFFTASLN-----------VKDVLLELVQNE--VRPLTDQELVELLAERGFEVARRTIAKYRNQLNILPSTLR----
169 UniRef50_B3W836 Sigma 54 transcription fact... 368 1e-100 1 26.2% 1:474 11:439 MDQSIRLNQRqkLVLTQGMRQSIQMLQLDAVDLDAYLKDVAESNPFIEVR-----------------------SHFERAEDSLSGATFEEMSAGSS--------------------TENLFDHLLMQVQLSLAGNPLRQIVVYLINQLNNNGYLILEDRQIVDEIG---ISPEKLTEAMRLLQGLDPPGVGARNLQECLSLQAHR---DTGIPKGVIAILDQDFELLVSHDMTRICEKNNLSTTELHNALDFIKSLSAAPGKVFEQPQpsYIIPDARlvTNDGQLKLWLTKWGRPELVFAEKTYQDLKKSADSATQQYLKEKHEEYLSLQHGLQRREETLLATVNQIVVNQHAFLLH-QAALAPLLLRDVAKALQVNESTVSRTIKGKHLQTDLGIFAFKDFFSKRTQAVSSSahSVDQLKFTMMQLIQSENKMCPASDNLLVKWLYEKGFKVARRTVTKYRNELGLPAASARK---
170 UniRef50_Q3MKN6 RpoN (Fragment) n=2 Tax=Gam... 365 2e-99 1 46.4% 1:351 1:368 MKQSIQLRLGQHLTMTPQLQQAIRLLQLSTLELQKEIQEALDTNLMLEEGDesEDIETPRLAVEQTVDREIHAESNEMPDELPVDTLWTDVFDSYLPSTSHGSDdsDYDPFAQQSRPQTLLDHLAWQLNLCRLSERDNMIAQAVIDSIDADGYLRIDIDELLLTVDHPEISAEEVEAVVHRIQSFDPPGVGARNLPECLLIQLSQLPAQTPWRNAAMAICRDGFEYLAKRDVASLVRQLKESEEAVAGALALIRRLNPRPGSLIAGAPAQYVVPDIFVRKREGRWSVELNPESMPKLRVNAEYARLIRRADQSADGVTLKSHLQEARWFIKSLASRNDTVLRVGAKIVEMQ------------------------------------------------------------------------------------------------------------------------------
171 UniRef50_C8WRI0 RNA polymerase, sigma 54 su... 361 3e-98 1 28.3% 2:475 3:421 -SLGLELSMRQELRLTAEMRLSLRVLALSSADLA---------------------------------------------DELERFAEEEPWFRYERPRPAIVSRAEDVDPLARVASREPLEERLKHELRLMDLPAPVLRVALYLADDLDERGYLAEPIDVIAERLG---ASPAEAREALAALQSCDPPGIGAEDLTSCLLLQLR--NEREPLKSLMASIIRFHLSDVAEGRLDDIASSLSVSLAQVEEAVRRIRRLTPAPAIAASNDPVAPLMPDVLVRKVAGEWTVEVTEWAAPRLELRAEYRRLM-QSGEEEARRFVSARLKRAAWLTRAIERRRMTLQSVAEALVRWQEGYLERGAVAIRPLRLADIAEEIGVHESTVSRAVKDKILGSPQGLIPMERLFSVEVAP----GWSQEAAKARLAEIVRAEDKASPLSDQAIANLLASEGCRLSRRAIAKYREALRIPNSFQRRR--
172 UniRef50_Q8ENP0 RNA polymerase sigma-54 fac... 358 2e-97 1 27.4% 1:474 1:423 MKQKLVINQSLQWKMNQSLYQSIEILQLTGMELYDYMKQVAEENPLIEEVQPIDKEL------------------------------------------ISQFRTTDYSIDEMNTAEQSLYDQLKSNLYVLELEDKSLlvIVFGIDSLNEDGYLEITMEDWAYYC---EVELTTVERALSYIQSLEPAGIGARNLTECIQLQLNQMNIDAPYIS---SLMNEGITLLAEENSHQIALNYGITEEAAQKLIESIKLCHPKPGKLLSPTKTEFIIPEASIYKDDTEWKISFFNWSSPAIQINSDYS---KHDLDREAASFVKKKQKEVDMLQQAIDYRSSTLEKIIRIIVEKQLPFFERGPKMLKPLTLSELSAQLDLHISTISRAIRQKYVQTAHGVLPLKYFLQREVQ--KGAGVASIVIKQLLKELVDLEDKSKPLSDQKIKQLMEErqIKIARRTIVKYREELQIASSVKRK---
173 UniRef50_C0CQW9 Putative uncharacterized pr... 354 5e-96 1 24.6% 1:476 1:449 MNFHTFLSTEQRQTLSANQLHSLEILACTNQELDSFLTKEYLENPMLE--------------------SSVNKENKLLADVESIYEKNKSYRDYYLEEDSSVEKRRSDIPAKPDLQFKNL---LLYQLHQNDYSNRQWACMEYLIDCLDSDGYFTMELSElaSAVSGLHFKTEELQTALSCLKTLEPAGIFSQSLSECLIAQLKKKEIKDDTLFLLIE---EHLEELMKGHLSTISRKLKLPTVQIKSYLYEISLLNPRPVMSAEDDEINYILPDIIVTKSNQLWDISINDSWMGKYSLNNYYIEMMQKTEDACLHQYFKEKLERARFILNSIEQRKATLIQIVSFLLDYQNAYLEGG-GSLKPLKQEQLADALGISVSTVSRAVRGKYLQYKK-TILIKSLFSAPVSSCKKeqISSSAVKEKLFQLIQQE--EQVLSDQKLAELLADSGIQISRRAVAKYRTELGIPDSRERRQL-
174 UniRef50_Q1IR37 Sigma-54, RpoN n=1 Tax=Cand... 353 7e-96 1 36.8% 173:474 263:574 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------DALREAIHIIQNLDPVGVATQDLRECLLIQLRylPHKNGNGHIAQAivSDHMHELQNKQYKEISKALGRPIESITAALDFIRTLDPKPGLRYNKQETRLIEPDVAFVKQGDEYIVVMNDEEIPQLRVNPGYKRLlrDAAEKDVRNYVKERYKSAIQLIKNIEQRKQTILKVCYSIINRQRDFLDHGIDQLKPMMIKEVAEEIGVHPSTVSRAVANKYVHTSQGVYELRYFFSESVNGPEGGATSLLILKRRVKKLIEEEDPARPLTDEQITRILQSQGIQVTRRTVAKYREDMRIPSTHQRR---
175 UniRef50_C5EQJ4 RNA polymerase n=1 Tax=Clos... 345 2e-93 1 21.5% 1:474 1:457 MENGlsQELKQKQTLSAYQYQSLHILHLGNAQVGELLKKEYLENPFIEQRE---GFSGEEYQWLEYYKANVKESRPIPGNGSGPEAGDADGDNGKEYGTSGCDWRMD----------------IKEQLYDGRTPENRRRLLEQMILLLDDHGFLAFSEREGSRLL---KIPVRQYRVLRKQLMELEPEGIGCVSMGEYFLFQLMKKGIHVP--DAFRDLCMNHLEDITEMTFVQIAHMIHASFQEVKRWVRVLGTLKPYPIRDSGEgaVETVIPDILIVPRGGGLEVRVNDYYMRQYCVSDFYRRTMKDEDNEELQEYMDRKLLRARQIYLAVSRRNRTICRMGEYLLRVQGSFFRGG--FLTGMTYKMFADELEVHESTVCRIVSNKYVSCPQGILPLKYFFSKGVDVVDggTMGKSSVRELIAFLIEKEPGDRPYSDGKLADMLKKegLRISRRTVSNYREEAGIRSVYERK---
176 UniRef50_UPI000196CE77 hypothetical protein CATMIT... 342 1e-92 1 24.3% 3:476 1:412 --MKLELKQGQKHQIYQKQIEKNQILQMDVQQLLAHIEKISFENPLIDTDDMIE--------------------------------------------STSDIGKEFDIDSLSRKTEPTLKEVIHWQLINKDIDNKE--LVESLVELLDDNGYLRLSINDICTYL---KCDEKEYLEAKDTLSKLDPPGLGADTLKECLLLQLERL-KETKDIHLTKILVDECLEDLSKSHYHAVSKKLGISQNKVRELLQIILTLDPRPASNYSSseVNYPVPDIIIKDG----IVQLNPMIYKDININTNYLSL---DENKETKKYIESKLRQVSWLQQCLSQRKNLIYDIAVFLFDYQQDFFmqGSCH--PLLQKDLAMLLGVHESTISRAIKDKYIYCDKGFILLSDLIPKGT-----EDNSVDSIKEKIKEVIDNEDKKKPLSDQKITNLLKDKGIEISRRTVAKYRSELNIPDASGRKHV-
177 UniRef50_A8LQ77 RNA polymerase sigma-54 fac... 342 2e-92 1 25.4% 4:476 6:424 ---GLTLRQQQRLTLTPEMRTTLSVLRMSAAALEELLVRQAEENPILSLRRPGPPPAAQATAYEVALDT--------------------------------------------TVAEVSLGDHLRAQLGLMSLAPPVHQAALALSWSLTETGYLDSTPAEIAQECALDEAT---VLLGLAALQGCEPVGVGARSLAECLRLQLVDKGIAPAVAARATEV----LDLLVGSDVARAARRTGIPAEDLGAVIRLLPELSPYPGQRFSPT-PQVSAPDVAVHFPDggPEIRVLRGRQSDLALDP---ELMAAARREAADTALARYGAEAEALHRALGYRANALERIVAFLVDYQSGFFREGGAAMRPLTREVLAARLGLHAATVGRAVADKTLAHAGGVIPLSAFFSARLGPETGAATSAYGVQSRIAALVAAESEDAVLTDGEIAQRLKKEGVDIARRTVAKYRGCLNIPSSYDRKRL-
178 UniRef50_C8S196 RNA polymerase, sigma 54 su... 342 2e-92 1 28.5% 2:475 4:423 -RPRIVLAQTQRLQLNLGLSASIQLLQADASGLTRYLQEQAADNPHLSLQRPAPG-------------------------------DWLPRWTTAFAQTAQ--------PPEAASAAPSLMAHVMDRIEALTRPGRERQIAHLLAEALEPSGWVGRSLEAIADSAG---ASLPEAEAVLAKLQkiEPVGLFARNLAECLRLQAQDADCLDP----VMQAVLGHLDLLADGQFSRLARLCGVTEAEITARLRLIRGFDPKPGAQFDHGAAPLREPDLLATRGPTGWQVALNRSALPMLELH--------APDHRPVPEAAKAQWAAAQALNRMLQNRNATLLRVAAEVLRRQEAALERGLSALVPLTMAQVAEALGLHESTISRIVAGTAVDTPLGCWWLRQMFSTRLGNETDG-VSAAALRAALARLVAGEDPGKPLGDQALVEALAQDGMVVARRTVAKYREMLHIPPAHRRRR--
179 UniRef50_Q3IW74 Sigma54-2 (RNA polymerase s... 341 4e-92 1 26.7% 2:469 4:420 -RQRISIAQTQRLQLNLGLTASIRVLNSDAEGLTRYLQEQAAENPHIQLEPATS---------------------------TDWLPRWTSVLSRLAQGEGSAGGE------TVAAAGPSLMAHVMARIDTLYPRGPERRIAILLAEALEPTGWLGTGPDEIARQA---RVPSAEVEAVLAGLQKIEPAGLFARTLAECLRLQAIEAERLDSTLSC----LLDHLDLVAEGALGRLARLCNTDEAGVTARLRLLRTFDPKPGAQFDPGAAPVREPDLIATKGEAGWEVSLNRSAMPTVQI--------RKPDKRPTTPAARAAWTQAQAVGRMIENRNATLLRVAREILARQEAALDEGPSALVALTMTEVAEALGIHESTVSRVVAGTCVDTPRGTWWLRRMFSGRLAE---GGPSAAAIRAAIARLVAQEDPAAPLSDGALVEALAAEDMQLARRTVAKYREMLNIPP--------
180 UniRef50_B6BVF1 RNA polymerase sigma-54 fac... 339 1e-91 1 25.9% 1:475 1:420 MALSAHLALKNSLKLSPNIEQSVNLLKSNEIEIELLINDFLSKNPYLQLDD---------------SEKINLNYSANVIENNEENISEDNIYGL------------------------SLKDYLLNNLFDLGLDYEDELLARLIIDYIDDNGYLKEGYDFFITELadSDTANKKIKNLILKLNTISSPGIGARNLQECLDFQLDQF-IQNQIVLDSKKIIENHLVDLANKNFKKIATNLNLQTDHIIKCNEFIVTLNPKPGLAysSDTSQFITPDIIVKNNGDKFNVSL-KNNYDSLKLFNLKKDEIND----------KDAYNQAKWFIKNLNYRKINIIRVVNAIFSHHKEFL--NENILkpLNIKTIANQLEIHESTVSRIVNNKFIETPHGIFELKYFFINEVNNT-----SNKTILDKIKAIIRDENKVKPLSDSEILLTLGQENITISRRTVAKYREQLGILSASKRKK--
181 UniRef50_B9KSN5 RNA polymerase, sigma 54 su... 332 1e-89 1 26.7% 4:475 3:402 ---SMQLRLGQRLAQRAVLVQRAEILEATGADWAERIAAEAQRNPFLRVRQPATAAPIPES----------------------------------------------------AALPPDLHAWLGSQIRMAMADPEDRALAFRLLEALEPSGWLGQPLSRLA------PGTEEQAARVLHRLQQMEPAGIFARDLRECLMLQARDRGQLDP----AMAAVLDRLDCLASDGPAAVARAAGLEEQTVLRCLELIRRMDPKPGAAFAPGDAPLREPDLIARRTASGWSVELNRSMLPEVRVTPL---------PDGSPADVRQMHQEALSLAKATGLRGRTLLAVGALVVERQRAFLDEGPAALVALGIGEAADALALHPSTISRTVTGLLMATPRGLVAVRDLFSARLA-EGTGALSAPALQALIRETIAAESAQAPLEDGEIVEVLARRGIHVARRTVAKHRTLAGLPPAAVRRR--
182 UniRef50_Q73JL4 RNA polymerase sigma-54 fac... 331 4e-89 1 25.4% 1:473 3:462 LKQRQQQILSQKMVMNQQMLNAVAMLNLSSEELQEEVIKEVKRNPAL---------------------------------------VFKTSSRVSAASAEEGDKHQSFLESIEDDSRKTLQAHLIEQAGESITDEYVLDAAMLIIQNLDQNGFYWVPLEElaGLLAEKKINHAEIKKALNIVRRFEPIGCACSGFKESLIVQaeILDIYKTIYSLCVKIIKEHYEVLvkLFIKKLakKIDIDLETAEELAGLIDALNPKPGLAYAsdGEKFITPIAEIKREGNEIKIIINDEEVPALEISPEYEK-IKNSGSKEEKKEASEFLNKAALFMNVLAYRNQTILKVLTALVNFQEAFFLGRPcyLKPLKQIDIAEIVGLSPSTVSRVSNQKYIRCEWGLFEIKDLFSPEVS----GGLSKDFVEKAIQEIIESDTEKK--TDTRISQILKERGIDIAVRTVNKYRKEMGLPSSYHR----
183 UniRef50_C3XKI9 RNA polymerase sigma-54 fac... 330 6e-89 1 26.8% 1:477 1:436 MKLRAQTSTTLKAKLSSTLKSWLPILQSGMGDLEETLNGFGLENPYFEVKSGIVDTLSTQS------------------------IAYKKQHKEKMRGAKGGKSLEGDGIEQFCIQEESLEVLLLRQIEplFPTRNSQEIAKKIIENLDNEGYFDGDCVVIAQECSKdeIYASEVEKIRLRFAYLEPPGIGALDVMESFRFQLDHLDVPSDVYGLCLEILEN------------LQEHTRFKNNPLyqAMRAIQSFKNPPALDFFQKEVA-VIPDILVLEDKDNIQVQINDKYYPSILI----QKQEKTDKNSIQDAFIKAKIKEARDLVDALEMRKATLYKIGLMIVEYQYEFFKGGE--IKPMTLKDLAEEFGHAPSTISRAISNKYLECSRGIFPLKNFFATAI----DEETSNTTIKDFVADLIRNENKQKPLSDSKILKLATErkVTMVRRTIAKYRAQLNIASSSERKKLY
184 UniRef50_D1B1S7 RNA polymerase sigma-54 fac... 330 1e-88 1 26.2% 1:477 1:419 MKLRVSQTQTTKQKFSSTLRGWLPILQANLDTLVETLEPFVEENPFI-SVKAGSEIPEKPFEKKNIFRESAKTSVSDTIEALTLD-------------------------------KKSLFQTLYEQVNplFPTEKSQRIAYEIIENINAEGYFEAdlVEIAHTLNVKET---EVEKIRQRFAYLEPLGVGAQDVKEAFLFQLQDLTLENTLYEMAEKLILN-FDVIESFGKEPLFH----------EALNIIKRFHNPPAIDFLEEEKE-VVPDIFIYTIEGAIEVRLNDTYYPEVIIDTE--------GVDESNSFVSQKLKDAKDLIDALEMRKATLYKIGLMIIEYQYDFFFG--KAIKPMKLKDLADDLGRNPSTISRAIAGKYLSCARGVIPLKQFFATAVE----EDISNSAIKEYMIELVKHENKQKPLSDIKLLSLIEKqnVKMVRRTITKYRQQFNIASSSERKKLY
185 UniRef50_B9Y8Z2 Putative uncharacterized pr... 327 6e-88 1 25.9% 1:475 1:410 MKSTLALtiQPQHRLKPAMLESLNILHMSSDALAAYLNEQMLSNPLLEWSDQ----------------------------------------------RTVRSDDLYEQAGQFVAAEVSLKQQLRQQAAVL-LDPADQVIAETLIGLLDDDGYLREELDAL---CGLMHINKARLNRILSLLKTLKPAGIFAHDLRECLLLQLMEQHPENELARR----LTEHLEALARGGTTSLCRTLHCTADQLNEAIALLRRCDPKPGRS-QGAAAAPLVCEVQVEIEDGQFKITL-AHSFSELIFNP------MPINDPTVQDYLKQKTAEAKNLLLAIQKRNQTLASITRAICLNQSAFFLRG-QPLIPLTRHQIADQLGLHPSTISRSLAGKGLEFNGQLYPFSVFFSAQVRN----DLSQDQVLRQLKRLIHEEDAEAPLSDQQLSDRLKALGCPISRRTVVKYREKLRIPDSRVRRQ--
186 UniRef50_Q256I9 DNA-directed RNA polymerase... 324 5e-87 1 25.1% 8:474 3:417 -------QQHQKLSlsLRMQQGLQMLQSPITELSSYVLQQIIHNPFFDLSSLEEE-EWSACSPLSSVDAS-------------------------------------------YSRPESLFSHLLTQVQQTFDHAEDLLIAQHIIGNLSDQGLLLSPPEDLSLQL---EVPLDSIHVVWQTIQHFHPLGIASPSLQDYWLLHLEGSSH-----QLAYKIIKEHYALLINCNFLRIAKKCRCTPADLKQALkaLATIPWCPAEGYAssSTQPALPDVYVTKKQQGWEIQISSRGLPPIKLNSEVFHIYEQLPREEKKN-LTQQILSAKWLIKNLRKREQTLFSIIEKILPHQEGFLLGKTSSPKPLSVKQLSEDLSYHESTIFRAIENKKLAAPIGIIPMKLLFPRAASDDS---HSKETILQWIHQWITSE--TTPLSDSDISERISKHGIQCARRTVAKYRAQLKILPAHKRK---
187 UniRef50_B9L984 RNA polymerase sigma-54 fac... 322 3e-86 1 24.4% 3:477 1:402 --MKLKTKITNKL--STKLLGFLPILKAGVDELFEEIKEISKENPYIEVRNK------------------------------------------RFVTVSNLKNANADEIEALTLSEETLYESLLKQIEDSNltKRSKDIALEIIEDINNEGFFEGDEKEIAKRLG---VDEEKVKRVRERFMYLNPAGVGAKDLKECMIFQLQNIDMPEDVYKLASEMIT-YLENIDK----------FVNEPKYKEAMKIIKQLNVVPAMEYIKDEE--IIPEIIVLNIDGQLEIRINDEHYPEINV----------KDPENKNSFSKEKFKEARNIVDALEMRKATLKKIALMIVELQYEFFQGGV--IKPMKIKDLADELEYAPSTISRAISNKYLLCDRGIIPLKNFFSIAL----DEDTSSNQIKEEIKNLIKNEDKNKPLSDDKLTEIINQknLNLVRRTISKYRDQLKIPTSRERKRIY
188 UniRef50_Q30RF5 Sigma-54 (RpoN) n=2 Tax=Cam... 321 5e-86 1 23.9% 2:477 3:419 -QLRQTQSVENRHKLSNTLRNWLPILHSSLSDLGEAMSPFIDANPIIEISSGFEDSFEK--------------------------------LIPKKIGNSSVANTRTEQIEALTFVKKSLYDVLDEQIepLFPTPISQKIASFVVCNLDENGYYEGDSEEFCK---NNAITIEEFEKVRLRFAHVEPVGVCAKNLLESFLFQLDSSDISDKVYPLAIKVIKD------------LENIYDYSNEafSEVMRVLTTFKNPPAIEYLEESAQ-VIPDLMIfnDNDSIEVKLNDAFYPIINIDTSY---------SIEHDYVSQKIKEAKSLVDALDMRKATLYKVGLMIVEYQYEFFTGG--AIMPLTLKTLADEFGHNPSTISRAIANKYIACDRGVYAMKEFFTTAI----DEDVSNAAIKEFVIGVIKSENRKKPLSDMKLLELIQDkkVQMVRRTIAKYRKQLNIAGSSERKKLY
189 UniRef50_Q7P6F0 RNA polymerase sigma-54 fac... 319 1e-85 1 21.7% 6:476 46:443 -----RQKLTQSLKLSQMMKLSINILKMSVMDLNKFIEKEFSE-------------DSGISVELNYSKKENFNGGKEAEMNYPTD-------------------------------EKNFFQILEEQLSYFKINKKIKEICIFIINNLDKKGYLELSKIEIKDIL---EVSNKELEEAFDIIHNLEPYGIGAYSLEECLKIQLKAKKIIEEKLSLF---IDNYLYLLADKKYDLIKEKLNINDNILFSYIDIIKSLNPIPSRGYSVGKVRKIIPDVLVEIKKNEIFYEINRASIPQINV-----------KDKIEDKYYK-KINE---IISCIEKRFETIDKIMKIIIREQKIFFTSQGKKINTLKISDIADKLNLSPSTVSRAVKEKYIKTNFGIISLRKLFNL--------DSAVFLYQQKILEYIENENKENPISDQDIVNLLEKDGIKIARRTVTKYREKLGYKSSHKRKKY-
190 UniRef50_D0GPK2 RNA polymerase sigma-54 fac... 318 2e-85 1 25.5% 1:474 24:450 MEIKQQlkLVNKQAISQKQLYSLEILKMSEQELFEFLKKEKEENPLLEIENE------------------------------------ESFFSSFWKSEKNDKAFEVKDE---TVASKNLIENIKLQINNQNFSYIENEVLIYILNSIDESGFLDLGIKEIRKKF---DIDNKKFKYILELIKEAEPNGIGTKNTKDFFKYQLLKKRIKD---KKLIILIDNYLEKLTNQ--KELCKELDIFEGKLSEYIGIIKGLKLKPIENIN-EKIEYIFPDIIVKKINNEWKVMLNEGFYKNIKINREYSNLLEKSEDQEMINYINKKIKRIDFIIKCIEQRRQTLYKIGNVILEKQKKYFEKNEDII-PMKQKDIALELNVHESTISRAIKNKYLESLRGIVKIKSFFSIGYDKKNIS-ISSLTIKKYISEIISNEKNGVIYSDEKIRKFINEkeINISRRTVAKYRKELKIYNKNVRK---
191 UniRef50_C4PNB9 RNA polymerase sigma-54 fac... 315 3e-84 1 23.0% 5:477 2:421 ----LHQHQTASVALCphLQQGLDMLQMPVAELATFVSQQITINPCFDLDSLDSPPES----------------------------------------------FSFFPISEQHPFTETLSAYLLRQIDTNFASSQERTIAQYIVGNLSPEGLFLENPSLVAADLN---VSEHLFHKVWQRIQQLHPLGVGAPSLQSYWVSLLQTSPH-----KEALAIIRNHFPRLARCDFTTIARKMHATTTEILTFLraFASIPWCPAAGFSEtpPAPALPDAYLSfrNSSWDVSINKDCLPSIRLNNTVLDIY-PSLPREEKDHLSQQIRAAKQLLRNVKKREETLLAILRVLIPYQEEFLLKKRTSPKAFSVKQIARELSLHEATVCRAIDNKTLATPVGLLPMRSLFPQAVGS--CPDQSKATILHWIHQWISTE--KHPLSDAAISQKIIEKGIPCARRTVAKYRSQLNILPAHQRKHLC
192 UniRef50_C8PAD9 DNA-directed RNA polymerase... 314 6e-84 1 23.0% 1:474 7:420 LSLRLKESLITRLFLSPKLKQDLDILSYNTEDLLKVLHDIAETNPFIDLKYTNANT--------------------------------------------------TTLDWVQDPSQDSLVEYLIKQIQLSAWSNNDKKLVTFLIYKLDNNGYLRFTCKQLANEI---EYSEADIQNAKNLLHELSPLGVGAYDLNECLLIQAKKLLHFNPI---ALAILEKHL--LERLADTSSWNSLPWKKEKILEALKELRKLEPTPGAKFDntNIQYLIPDLIFEIDNGHVLVKDSKFNLPEVVFNEVEYTNLKGSCATNEVEYFNAQKKQFMDLQLSLERRQKTLIRLGEYLAKYQLAYLKtdKKQLKALNMNNVAQSLGLSVSTISRAVKDKYFECNNRIISLKIMFMKSFKN----NITAMKVTDTIERLINEEDKSHPLSDQDICDQLLLQGINISRRAVTKYRTKMNIQNSYWRK---
193 UniRef50_Q7WTR8 RpoN (Fragment) n=2 Tax=Pse... 313 8e-84 1 48.5% 1:305 1:325 MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDdpDVQEPTYQESAPTVDNLEDGEWSeeLPVDTAWEDVYQTSASSLPSNDDDEWD-FTTRTSAGESLQSHLLWQLNVAPMSDKDRLVAVTLIDCINNQGYLDETLEEILESfpELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLTEAQRLVTDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVIPDVIVRKDNERWLVELNQESVPRLRVNPQYAE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
194 UniRef50_A6DC70 RNA polymerase sigma-54 fac... 312 2e-83 1 24.4% 3:477 1:401 --MKLKAKVTNKL--STKLISFLPILKAGLDELYEHIKEVSFENPFIEVRNK------------------------------------------KFITVSNLKNAITDKIEALSTSESSFYEDLVSQIENSHftEKSRFIALLIAEDITPDGFFDGNEEEIALSVG---VDVEKVKKIRERFKYLTPTGVGAKDIKECFLFQLDNLDIDEELYLLVKNMI---------NDLENLDKFYK--HKRYNDAIKIIKDFKTTPALEYSISEEIIPE--IIVINNNGNLEIRLNEEFYPEIFINEYV-----------DDKYSKEKLKEARSLVDALEMRKSTLKKIALMIVELQYDFFKGGV--IKPMKIQDLADELEFAPSTISRAIANKYLLCDRGIIPLKNFFSTAIN----EEVSANQIKEEIKNIIKNEDKNKPLSDDKICEFINEknIKLVRRTITKYREAINIPSSRERKRLY
195 UniRef50_UPI0000D54D13 DNA-directed RNA polymerase... 310 7e-83 1 25.3% 3:464 5:412 --LSQKFKQRQKLTLTPSLKKSIDLLQLSRYELINKIQQEIEENPFLEKIEDFENNTAP-----------------------------------------------DKDFSFEIESKVDLKGSLLDQINDLNLDIKSLQISKLIINNIDEAGKLVEQLEDL-EELSSYEYSIREIETVLqvIHKLHPHGIGYRDHKECIRIQIEYGKLKNELKEICLSIinDSLDDL--NKIKNNFISNGGEESAFENALNEIKKCDLSPGLNFQES--QYIYPDLKITKENNQTKISFIEKDFPKIKIDEALAKNVKKNLKIEKNNELSEKISEAKWLLSSINKRNDTVLKVGELILSKQIHFFENNPIKIEALSNKEISEKLNIHQSTVSRILRNKYIESPKGIIPLKSLMVSSVS--KSRNVTSIQLMKLIENITKKEKKPKSD--KQIAIELNKRGFNLARRTITKYRKM-------------
196 UniRef50_UPI000196AFF4 hypothetical protein CATMIT... 307 5e-82 1 23.5% 1:477 1:407 MKQKMqqTLKQTLKLNQKLLKSLDFLTDNIDDINKVVQQVLETNPFLEL--------------------------------------------------KSPKNYDTQQFIESISNKRSLKDDLYLQLSACTRPYNE-DLMDYLIESLDDSGFLSYPIDQ---YLTDLDIDREMLDAHLDILRSFEPNGVGAADAIDSIMIQLKNNNKIKS-----YTLFRDYQDVILTQNYSLIKQKTGLKKEEIDHLFYEIRSCNPFPCNMYSSSQDDYISPDVLIEVEDSNIIIT--PINQPELIVNDLLYEKVKNDEN------MKSYFNEAHFLIENLTKRNQTVLFVANALVDIQSGYFLY-DDELYPCTLSQLANETGFHESTISRTLNNKYYSFNGEVYPLKQLLVSQTASGD----SSDSIKKAIVELVDSEDKEHPLSDNQILKKLEELELHCSRRVIVKYRQQLNIPSSTKRKILL
197 UniRef50_UPI0001906882 RNA polymerase factor sigma... 306 9e-82 1 34.5% 3:344 5:340 --TSLHQRQQQSLVITPQLIASIRLLQLAHTELNQFVEQEIEKNPFLDLASNDGGasPTAADDPNISAREDHVDGPARTDMPELSSPWKSIRDTGNLSPG-----ERPSLDEFAASTETLHEHVAHQIALTAFTPQERLIAGALADHLDDTGYLQVNLQELAERLNSPEAG---VKRVLEALQLFDPPGIFARSLGECLEIQLRQRDRFDP----AMAALVANLELLARRDFRALKRRCRVDEDDLLDMLNEIRALDPKPGNQFQSARSESIIPDVFVLPsgGGWHVELNREILPKVLINQTYFAQVTraQSSKDQSFLNECFQSASWLVRSLDQRATTILKVA-------------------------------------------------------------------------------------------------------------------------------------
198 UniRef50_A8RDS7 Putative uncharacterized pr... 297 4e-79 1 22.3% 1:475 1:402 MEQKLLLkiKQKSNFHSAREQALQILQMNQQDLQMYIREQADHNPFL------------------------------VMNTIGEDSDIFDVY----------------------SPKQSLSDTLYDQLCYIEKPYKE-EIVDYLLSRLNSNGYFKISLEQLIL---GSCFSQKEIIETIAVLQRLEPIGCFCFNLKESLQIQCEM---HEEACSETGYILCDYLEDLAFHRFAQVEVKTGLSLEEIEEGFAFIQGLNPKPASNYA-TQSAVILPEIRVKLVQGHLVLETVQEI----------FRLQLEEDMGTHHEYLKRQRKEATLIMNSIQKRKMTIMQIMEFLVDKQKAFFLEK----KPltLQDVSKACGLHVSTISRAIQNKSFEFQNNYYPIKYLLVHG----GDKAHHSQEIKSRIKALIDNEDKQRPYSDERLRKLLEKEGIRISRRTVSKYREACLLFNASQRKQ--
199 UniRef50_Q9ZLC8 RNA polymerase sigma-54 fac... 295 2e-78 1 24.9% 5:477 4:410 ----LRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKN-----------------------------------FSDRFNTKKSSD-----HLENCATASKSLFETLESQipPLFPTETSQKIAMDIISGLNNEGYFEENIEERAKVLG---VESEVYEKVRKRFSYLNPAGIGAKDVKEGFLFQLDGRELDneLYEETRKII---LNLEKHHEFSKDFY--------YEKALKILKSFKNPPAIEFLEKEIE-VIPELFILEVDNEMIVRLNDESYPTISLEENRFK---------DSDYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGKE--LRPLKLLDLANEFNHSVSTISRAISNKYLACERGVFPIKHFFSIAL---DNSETSNAVIKDYLLELIKNEDKKEPLSDAKILELIEEkhLKMVRRTITKYRQLLNIASSSERKRLY
200 UniRef50_Q5LLX0 RNA polymerase sigma-54 fac... 292 2e-77 1 21.1% 3:475 5:425 --QRQIQTQAQKLALTQAMRASLSLLSMDADEAAEAIRREQSRNSFLRTVPPPLPGGGGAADQPEIAHMESGTED------------------------------------------------LLRQVALIRMTTRQNQLAQDLVHSLDERGFLPDSPEETASYL---QCSPAELSALVPILqaVEPAGVFAWSLADSFRLQLQAKNRFDPLIER----LLCRLDLIARQDIDGICKACDVDREDAIEMLEDIRSLNPSPLFRQSHPIQASGEPELIitAPDGTCTASLNEAALPRLLTDDafSSTMAAETDAHAQSYYRDCYRGAANMVRAMQKRANTLLSAGQTIADRQHKFIRSGRLRDkpLTMTLIAQEAGLNKSTISRALSNCRIRLDSGIFPAEHFLARPLS-DDTPDRTRDQVLQRLRLLIETENPRSPMSDQVLARQLGKARLSISRRTVAKYRQFLQIPGAYERKR--
201 UniRef50_O83149 RNA polymerase sigma-54 fac... 291 3e-77 1 23.7% 16:471 13:475 ---------------NQRLVHGLCLLQLSRGDLKTEVLRAVQRNPLLEIRPSSARRTGKACYLS---------------------------LGDRRERMRARDRFQQLLENQPDKQVDNIRAVLREQVFYQKHEAIVLDLACAFIQMLDDHGFFSISPAIFQNMCGSMPTALQeiPQAIALIQRLEPQGCAVFNFKESLAVqlRFERFSDPLYRCVINLLTHHSELLFCSDNMCDGRVskVSSNDVKDILLLIKELHPFPGKCVSndTNMLLEPDVLITKTAHGFVTQINCTGIPTVVFRNDY---CMHSKAAEKNHALKACMHDALSLVSMLSYRERTLLDIAKTIVHYQCGFFDHGPAKLTPLRMTDVAHRTGLSVSTVSRIVRDKWLQYGSQHFSLRYFFSPRvsTEEYRDRSSlsVKYRISRLIQEVRTQRilSDRRIAQLLGEQGIKCARRTVNKYRSELRTCSSS------
202 UniRef50_D0D5Z1 RNA polymerase, sigma 54 su... 289 2e-76 1 23.6% 1:474 1:416 MSPSTRLQVSQNQVF--RMGHVISVLQLSGEELDEHLLQTAQSNPLL-------------------------------------------VVRRRRQTAIRAGSAHDLIDSTFADRPTSLYDHVLRELalAGRGAAMERLILALVEELEPSGWLGRPVPQIAETLG---LSVQLVETALDLVQrvSPAGIFARDLRDCLRLQLEDQGLWDD----AAGRVLAHLEVLGTGGAEALERATGLDAATIATRLHRLRRLDPKPGSQFATDLTLMREADVRIEARGDGWV--------PIFRTSFETVVAVPPGASGDSSPEMRRALGEARALKQALDLRQGALKQIVQVMIEVQGAFFRDGPEALQPLTQAMIAAKTGFHLSTVSRVLNGLLIEGPNGIIPARTLCARRSALCSTDGPSKPKVLARLRALLLAECASHPLSDVQLSDALRAEGLAVSRRVVARYRHELGFAPAAQRR---
203 UniRef50_B7C885 Putative uncharacterized pr... 288 4e-76 1 21.9% 1:475 1:402 MKQDltHTYKQTLHMTTGLKSHLEILSKDRQTLSDLLYNVSQNNPFLE---------------------------------------------------YTPSQDIQQYLETGISNKPSLKDELYLQLHTSTKKYNE-PIANYIIESLDSHGFFD---QDIHTVLSDLKCTKAQFEETLSFIQTFEPIGVAAKNSIDSLMIQLKTKG-----YTVAYTILKNYSKELEEKDFYTISESLDIPYETVFDELAHMQECNPFPCSEYDTEStnLALPEFTIEIDEDQLKII--PKEMGNLSLHCEEVKLSKEA---------KKYLNEAKFYIDSINRRNKTILLLANILITHQKNYFLFQDD-LKECTLKEIAEESGYSISTVSRTLSDKYYEFNDHMYPVKDLFISKTHK----GSSKDSIQKAIQLLIEVENPENPLQDEEIVEELKNMELYASRRTISKYRKELNIPNSKQRKK--
204 UniRef50_C0XEY8 RNA polymerase factor sigma... 287 9e-76 1 23.8% 1:475 2:408 INQFQKTTQSQKQIFKQYQLTSLSMLSDSYTDLAHYLKTQEEKNPYLTV--------------------------------------------TSNRTKQNLDWITEDESGLTKTK-------LLHDFNLEVKSNKLKYFGAIVIDNLDGHGFLS-DYHHLIEQFPQQQ---KLINKAINIVQNIGPTGIAARSVSECLLLQLKHKSN---YPKNTDTIIKYYLEDLANHNFRKIYTNLSISKNDLFKVICFIKSL--RPGVEINTdnNKIIIPELFICYDHKKIFTHLIEDN----QFNLEFKTPSYSTNDTETLKFIKKQKKQAQNLQKNYQRRQDTLLLIGQTIAEQQEIFFATGGKKFTPLNESQIALETHLNVSTISRTVRSKYFQCDFGIFPLNILFSSKINN-----FSQKNILNMLKKIILNENQKNPLTDDEIKNKLLKNNIAVSRRTISKYRKKLGIGNYYQRQK--
205 UniRef50_B1CB68 Putative uncharacterized pr... 268 3e-70 1 29.6% 233:475 2:243 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKISKELNISRLEVRKYIYSIKCLNPKPLINIKMSEPVYINPDILLTYENNKWNIELNDNWINNYYISDYYLKMIDTSEDENLKMYFKEKLSKCRFILNSLEQRRNTILNITKVIIRRQEKYFR-GNGKIVSMTLSEVADEIDMNVSTVSRAIKNKYMSSPIGIINMRDLFSSYVSYGEDIRLTPEDVKQKIKVIIEEENKKKPYSDDEIVNKLNDENINISRRTVSKYRKELNIPTSYNRKE--
206 UniRef50_O66858 RNA polymerase sigma factor... 268 4e-70 1 25.9% 112:474 65:397 ---------------------------------------------------------------------------------------------------------------YQIPYTPSELEELQQNIKL-ELEGKEQELALELLNYLNEKGFLSKSVEEISDVL---RCSVEELEKVRQKVLRLEPLGVCSKDVWEFLELQ------IEEIYPEEEEILKKALRDLKRGKKLKPEIKGKLS------------RLRLFPLSSSAEKVYTFAKVDAIIEEENGEFFIYLYEDFI-DIDLNEEYWELYKKSRN--LQKELKEAFERYESIRKVLDIRRRNLRKVLEKIVERQKDFL-TGKGSLKPLTLREVSSEIGIHESTLSRIVNSKYVKTPVGTYSLRTFFVR----ESAEGLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLGIPSSRERR---
207 UniRef50_UPI0001BC42F5 RNA polymerase factor sigma... 267 5e-70 1 21.7% 107:474 49:382 ----------------------------------------------------------------------------------------------------------EKSFFENLTEEKDFYTFLEEQLLYINPPKNIRENLIFCIYNLNSSGFLEFSDIELCKHLG---ISMKELKETYEYLYTLHPIGVGAHNFRECIRLQLQKKKEWNQKMEG----ILLHLQYIADGNSEKLRKKLGITKEEFQSFLNKIKNCNPIPARGYFIRKNLTIVPDFVLVLENEVWIAKENTELRDSL-----YSTQIIETP-------------SIKLLRLCIEKRMDTLKKIVDYVVEYQKEYF-KGENFLHTLHEKQVAHDLNLHLSTVSRAIQNKYLKTEKGIYSIKSLFCY--------EEKREKIKMEIERLIKYENYQKPYTDTQIQEELKSKFGKIPRRTIAKYRQELGYVSSFYRK---
208 UniRef50_Q7M8V1 RNA POLYMERASE SIGMA-54 FAC... 266 1e-69 1 25.0% 5:476 2:393 ----QSLRISQKQALRLSVRQWCAVLEASGSELEKKLSEAALENPFL------------------------------------------KFRRKSLPTFSSGDFIENSPKERF------LQESLLDQIDSSFFPTesQKIAAKIIEELNVEGYFEGDESAIAEEFGT---SEAEVEKIRKRFRKLDPCGVGAKDSLEAFEFRLLESDYDEDLSSLAYEIL---------RSPGQIHHLQG--QARLLEAIDLAKRFSAPPALEFMQGEA-FRRPDILVAEDEGVFRIEVWGDE----------FELGVEACGVKEKNSLK---KEARLLCDYFNMRHSTLRKIATLIVDLQRDFFQGGE--LRPFSVSQAALEIGISQPTFSRAIAQKSLCCSRGTFPLRKFFPY----EAKNGVSGEEIRAFIKALIAQEQGGRIYSDEQLSELVKRkgVHIVRRTIGKYREQLGIPSPNFRKKL-
209 UniRef50_B7J217 RNA polymerase sigma-54 fac... 265 4e-69 1 22.1% 9:466 2:409 --------IKQKLKISQNliQTIKILGLNQKELTKLILEESENNECLEID-----------------------SNKIFFETLKTYRFKKVFYKEDDMIKNQHD-----IALEKTQTNTSLKEHLLLQLRIQRINEDEIKIGEILINNLNSKGFHIINPYDLFKKEEKEKV-----KKTIELIQKFDPIGICVPNIIESLILQAKHHKLETNIIKILEK------AELLEKTQKKLKEELKIRSKEFNTALEIIrkLNPNPTLEFKDPNDtyVDPDILIINHNNKFKIKIKE-------VNIFKKELKRTSENP-------QKQKKAKWLIESLRYRDEILAKIGIAIYTLQKEFLRRGFKSLRPMNLSILSEKISVSKSTISRAIKNKYLKCEWGTILIKELFSS-VGGAKTNEFSKLSIKITVKKLLEA---NKKMSDKEISVILKSKGISISRRTVNKYRNELK-----------
210 UniRef50_C5CDZ9 Sigma-54 DNA-binding domain... 260 1e-67 1 22.2% 1:465 3:381 LEHKLSQKLEQKLHLSLKVQHVLKLLQLNSLELMTELREIVDGNPLLELEGEDYKLIDE--------------NDIETPEEENYESKSDSPYFPKHYNPDFDGWDFERLEGPQPSFEEMLRNF-----AFYILEDDEFKIFEILMDNMNEFGLLKRSIEEISREVAVNERDI----------------------------------------RKVIKKLRDSGFDGLFAEKLEEL--------KELGEGIVL-------PSSGYNDGNpmYIEPELYIDFVDNRFIVTAKDYGL-AIRVDEVYRELLKNEKD-EAGKFLKEKFQEAEFYVNALEKRRSTLITIGEELVRTNPDFLLGYCKTLRPLKMTDIAEKLDVVVSTISRAVKGKFVQTPIGTFPLRYFF--------GSEQTREQAMEIIAKLLK-ENPK--LSDSAIAKKLNEIGIKIARRTVNKYRNVL------------
211 UniRef50_C4FUT1 Putative uncharacterized pr... 259 1e-67 1 19.1% 21:466 35:433 --------------------QLWQMLGLSAAQLTYFLEDEILENPFIELDYPKTKPQQASVTLQEHSAII-------------------------------------GVDPQMPEAPRNLPMFLFEQIMMYRHT-IIRDAMVRLIDLLNPQGYLPYSYQEVAKQLGIEPI---IALDAITLFQQLEPAGIGAYDMRECLMLQTEQ---DAHAPNVAYYLLEEYFDQLKAEDYQAIVAATGLALADVLACVSYYQTLRTSPADLFQVEEEDHLLDDVTVLQDQEGMKVRYNAHYYPKLIFNEPYYQEMLATQEPEVVAFSKPQKLMYDRLARNLRVREQLILKVAQAIAAVQHDYFSQISDAKVPLLLKQVAEITGLPEPVVNLLVSNKNIGFGQYVLPMTDFITVATR-EGRDGFSAEKIKQVIHEILH--DAPADLSDEELVERLEERKIMISPFMVRNYRQALG-----------
212 UniRef50_A8UUG6 RNA polymerase sigma factor... 258 4e-67 1 22.8% 23:474 22:396 ----------------------VEILLHPVQELEQLLKEEKESNPFIEEVYV------------------------------------------SGRVHTFYEEKRLPEPTLKIHPLEALQRNVKAELEGLDLD-----IAQELISQTDEKGFFRGDQTAIALKYG---VSKEYVEDIREFVMRLDPLGVCSKDLKEFVRLQIEELYPEEPELVEEFE---------KALRGENISEDSRLKLSHVR--------LSP---LEEEISVPRVAKVDAVIELDDGELVGYVYEELI-EVRPSRSYMEMMSKVKG-EAREFLKEYLERYENFKKILAIRRDNLKKILNEIIEVQADFL-KGEGNLKSLLVKDVAYKLGVSESTVSRLISSKYVKTPQGTYPFRFFFVR----ETAGGISQEELMKEIKEVVAREDKGKPLSDDEIAKILQSKGYNVARRTVAKYRELLGIPSSRRRR---
213 UniRef50_A1BC03 RNA polymerase, sigma 54 su... 245 3e-63 1 21.9% 113:472 67:394 ----------------------------------------------------------------------------------------------------------------LLPQPDDPRAELIAQIGLLPLPADQMRIAQELVHCLDDRGLLADPLAEIAGWLGT---TPAVLEGLLPHLHRLEPHGVFARDMSECFRLQLRAKNLLDPWMDR----LLDRLDLVAEGNLSAIAAFLGTDHEDAGDMIADIRALTPAPLGIPAAGGPPP--------------ELELTAQGV--LKPGPSLALALGDEGDGEARAM-------AQGLVAAVENRMQTLLRIGTALIEIQSSWLL-GHGARRPLTMTALGTSLGLSKSTISRAVAGVVIRTPAGPVHLRDLLKPPISSHNP-DLDREGVLQTLSQIIGDWPEGYRCTDARLAEKLAARGIRLSRRTVAKYRLGLGVPRHRQ-----
214 UniRef50_Q2EU28 RpoN (Fragment) n=40 Tax=Ga... 239 1e-61 1 100.0% 310:470 1:161 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPS-------
215 UniRef50_B9Y4S8 Putative uncharacterized pr... 239 2e-61 1 22.6% 107:474 76:411 ----------------------------------------------------------------------------------------------------------DEVLFAQAQPEFDLRADLLNQLHTGRWRFR-LDVAEYIIEALDDHGFYD-------PAQPAPGFQPEEIAAALSGVQQLEPFGIGCRNSLDYIRRQLRFRNE-----RMALRILDEGAEELSRGQISTLCRKLRLTATELQDQLNVIRSCQLYPC-QLGPVENTYVQADVRLTLEDGEFSI---------IPLSP---QVLLDIPAGPLSPQLKQYLKEAQLTLDLIDQRNLTMQLVFQCLVRRQRDHLLQ-DAPLAVCRLKEVAEETGLHLSTVSRACAHKYYEFNGRIRPFSDLLCKAL-----HQISRDRIETQLKRWIAEEDPAIPLDDEQLALRFQNEGVVLSRRRIADVRKRLNIPNSYQRR---
216 UniRef50_A7TBU8 Predicted protein n=1 Tax=N... 234 5e-60 1 30.9% 221:443 175:408 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ENSFDHFVKKHYKKLMEKFAISEEELKEVIQEISKLNPKPGSSYAGNnaEQIVPDFNIKIIDGNLDLTLNARNAPELHISKEYNNMLKGYQESKEKsfIKQKLDAAKWFIDAIRQRQQTLLITMNAIMHYQYDYFLTgeRKLKPMILKDIADQIGMDISTVSRVANSKYVATPYGTKLIKDFFSESMKNDQGEDVSTKEIKKILETVISEEDKRKPLTDDKLS----------------------------------
217 UniRef50_B4U9T0 Sigma-54 DNA-binding domain... 227 1e-57 1 21.6% 75:473 35:395 --------------------------------------------------------------------------ATDLEQELKVEEELNPFLKLKVLKPPKKFFINKEDYTQNIAYSYSYKEHLIKAINE-ELEGIEKEIAKEIVYSLDSSGFIseTLEDIKNHFG---VDWDIVDDARAFVMEIEPIGHGALNPFEYMELQIRTYYKDKKEY-------IKYLKDLEERK------------KIPKEAMEFFSSLKKTP-IQIDKTNLLPSKVDIVIEIDQGEILYDIFDNY---VEISQE--NIEESLEDKELERYLK---QRARRFVEAINLRRKFMKELTKIVVERQQDFFLK-DKPLKSLMLKDVAGEFGISISTVSRLVNSKYVKTPKGVFKLRSFFVR----ESVSSKSQEEILNMIKKLIQNE--ETVYTDKDIEEILRNYGINISRRTVAKYRAKLGIGSSRKR----
218 UniRef50_C4L5I1 Sigma-54 DNA-binding domain... 222 2e-56 1 22.5% 111:475 54:376 --------------------------------------------------------------------------------------------------------------DWIADAASSFEEKLFTQIHEGSGSESEKALRRQLVLLLDHRGLLPEANEVLAERLG---VDVTQVEQARQTLLFLEPTGIGSRTEREC---QYRhiEHEDPR-------VVDVFEAIESgsPQQMTTALAISNEELARLERIVATLPKRPLLY---EETGHVFPELEVRYEEGTLVTTWLSPELDETRVGND---------------------REAKWWMTSLSMRNETLREIWSVIESRQTEWL-QGELVLHPLTRRTVAQLIGKHESTVGRAIQGKFAKTESGIMEWRHFFVRSTS----RGHSPFMIKRALAELIQRE--KAPQSDQALANELIRYGYQVTRRTVTNYREELGFGNSRERER--
219 UniRef50_C1TNP1 DNA-directed RNA polymerase... 216 2e-54 1 19.8% 2:475 7:391 -SPRLTQQVRTELLHLPVLIQNLRLLTMPVQELVDTAIGELADNPLYEVNPPRSWQESGILDD--------------------------------------------------LSEEPSLEENLIRQmqCRPLREERDSLPYELVRYLDHRGYLTDTQEAIADQL---ELTAERLDLLLERVRDiePPGLFARDLIHCLSLQLIRSGKEESDGA---KILEMAVDLLGKGDPKDAMERLGWSRSRFDRAMEELSHLDPAPGRR---TTAQVVIPELELYPDPDRPAVVL-AENLPRIYMTPL------TWEDDRVTSMKGRGLH----IIQSIARRNASKLSLAIEVAKKQKDYLMSREGAPYPMTMTEMAEKLNRSVSTVQRIASTTWAVTPVGTVPMDRLFSRPLKSR--PDMSVAQLRSRI-----EEASRKGMSDSELS-----RNLGVPRRTITWHR---------QRRR--
220 UniRef50_B1YLE5 Sigma-54 DNA-binding domain... 209 2e-52 1 21.7% 57:475 2:375 --------------------------------------------------------EQRQEQAQRLVMSAAQLYQLTVLEETQAELEERLYRIIRRAGRSEHNGRKmpDLEQVADRIDSFEAELLQQIRLESVRQEIRYMAEQLIMYLDADGLLRTTDERLAVLLDSEE---PMIRQARQLLQQCEPTGIAARSEAECRLLHAIELEDDR---------LMDLLTALSDGQP------LKAVLDDETERRQMKQKMERLPKTPVLPVSTTMTIPEADISWSDDQ--VQIQWSSLP---IDTSWTD-----------------LAEAKPFLSAYERRRNTLRAILDVIVERQIRWF-KGELHLEPLTKKEVAKQTGYHPSTVGRAIVHKTIRTIHGTLELENFFVSKTQS----GTSSFLIKARIAQLIQE--ATSPLSDQQIVNRLDLEGIRVARRTVAKYRAGLYLTRSDMTKR--
221 UniRef50_C6S982 RNA polymerase sigma-54 fac... 178 4e-43 1 28.1% 5:271 4:242 ----LGIKLKQTQQLNQRLQQSLRVLQMSGIELEREVENWLSDNPLLERKDT--------------------------------DEFSDAEFSHYTAPARQIGGDEGEDMLSNIAGEQDFKQYLHAQVCEHPLSDQESACVHILIDFLDEQGYLTDSIEDILDHTPLemLDEAMLKQALTALQKFDPAGVAAADLNESLILQIERLGECA-AKPAALHIVRNALDSIDGNRSQTLARIKktDSGTLEAALDLIASLNPFPAAGFASSTPTP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
222 UniRef50_UPI00006DCE7B hypothetical protein CdifQ_... 171 6e-41 1 25.3% 2:246 4:217 -NNSLELTQSQKLIMTTQLKQSLSILNMSKLELEEEIKREAENNPLVE-VEKSGEINWEEY--IKDMDRSRRLDRTEI----------------------SYNPDNEVNLENLVKYSSNLYEDLKFQISLYKLTDKELEVCEYIIDSLDEDGYLRTEEKVIVDTL---KIDEELFEKCLISVQQLEPSGVGARSLSECLMIQMASLGIYNEILE---EIVTKDLNLIANNKYKEISKKYNMSLQKM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
223 UniRef50_A7HM99 Sigma-54 DNA-binding domain... 158 5e-37 1 20.8% 154:465 2:260 ---------------------------------------------------------------------------------------------------------------------------------------------------------LEAPIYLLFEKYGQREISI-EIEDSYYPIHE---------DLHQRLEMMIPFLGLEDEDEKIAEYVI-YNIDSKGKLRvqEVAQKFGVSVEKAREIIdeINQLS-------SEDEENYILPDVAIM---------------------PDYVEVRKIEVKDPV-------------VMKAIEMREETLRKICEIVRKINEPFLRGYRKYPHVVTMKYVANLVGLHVSTVSRAVNRKYVNTPIGVLPLRIFFGRLLNPK--------LVMNEIKELLKIDSK---LTDKQLVILLKSLGINISRRTVNKYRNLL------------
224 UniRef50_A8F4Z2 Sigma-54 DNA-binding domain... 149 2e-34 1 22.3% 153:462 32:305 --------------------------------------------------------------------------------------------------------------------------------------------------------YLQNSFSGVSLDVQIPEKNESFVETVVDY----------EKSLPEEIMENIIFANLDDETEKVAEYI-AYNLDNKGKmsVQEICEKFGVSEQIVKRAIDAIRelDGKVAG--YGDASIYVEPDIIIT-EDLSVSVRSFEMKIPR--------------------NATKTQLKIISFLNEALNHRKELLLFLGKTLLKENALFILGKSTYPKKTKMTDIANTMNISISTVSKAISGKYVKTPFRIFELKTFFGRHVAGD--------YLTAEIAKIILE--KGKSITDREITIILNSQGIEVSRRTVNNYR---------------
225 UniRef50_B5Y8H8 DNA-directed RNA polymerase... 132 3e-29 1 16.6% 92:464 19:307 -------------------------------------------------------------------------------------------FTEFLVRYGDFGPEELVEENISSRQGETiwDMVEAQVDML-FDDEELNIANELLGSLDHLGYLGIDLSDLAKQLKVNEEYVDQVRK--KLMREVEPFGLGSVSQRE----------------------------------FKQLLKELNLDSRD-------------HP-IDLPEERLRVTTPDFALELVDGKLEV----------NVSEKYEYLIQNTQG----------------IPRMveYRKDLIMRLANFLVQH------CGEKIlkPctLDHAAQELGVSKSTVSRLVRSKAFTFGGRVYPVEHFFGRSVK-----GVPQEELMLEIIDILKSMPTA---TDAQVSQLLrrRGWKFSRRTVNKYRHM-------------
226 UniRef50_D0R1X8 Putative uncharacterized pr... 120 1e-25 1 19.2% 1:229 1:174 MSLKVQEKLVTRLFLSTKLKQNLRILSYNAHDLSIVIQEFAQENPFVELKNP--------------------------------------------------SKELQNLDWIQDNETENLIDHLLSQVRISDWSNKSKRVVIFLIYQLDNDGYLRKSLENLKSKV---IFSLQELNAGKDKLQKLDPAGIGAKDLNECLLLQARDKKDFNSIE---ISLLEKhlEVLAD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
227 UniRef50_D0R1X9 Putative uncharacterized pr... 116 3e-24 1 20.8% 241:394 1:156 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNMKKIITALKAIQTLNPAPASEYegEPTQYLIPGLKFYFEDGKLLISSARSNLPEMIFDDEKFVELQKDSEIKDKDYFIKQKKDFTDLHYAIRQREETLLNLGKFLGRRQEKYLSsnEQDLVSIKLEDAATELNLAISTISRAIKDKYVEVPR-----------------------------------------------------------------------------------
228 UniRef50_B1CB69 Putative uncharacterized pr... 111 5e-23 1 20.0% 1:195 10:171 MDIKQEHNISQVQTLSQAQVMSLNILSMDSLELNEFLYKEYLENPLLE-------------------------NKCENNRDITLDIKNMDI-----PSKRQHSKDDIKYLETPNTDEINIKHYILYQLNYDDYSKNDLVIMEFLIDCLDNNGYFNYELTEISEI---SDYNIGDIEKCINVLKNLQPYGIFSKDL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
229 UniRef50_UPI0001912E87 hypothetical protein Salmon... 100 1e-19 1 86.7% 1:75 1:75 MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQTDLHDEIDTQQPQDDDPLDTADALEQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
230 UniRef50_C5V070 Putative uncharacterized pr... 99 3e-19 1 18.0% 291:473 102:286 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSYVREYRFDEEGVSLMMSRPdaELAGVLRR--------LRLINTRNRLTHALMQAVLVSQAAYLRSGQaaLLPMTQAEISARLRldPGRISRLVRVLSIALPNgtVPMGGLF------PKPRQVHCHFVDHVIKmwMLQEELREPLTDGAIVAILeeYGLRLLRRTVANIRHDLAIPDYRSR----
231 UniRef50_C6I101 Putative uncharacterized pr... 98 8e-19 1 21.9% 291:468 72:263 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEGHPEIFWhrEYRMDDAVIDHMRDHEEIGEDLGRIVRRLRLVNSRNRLTDHIVRFILHVQAGYLETGdlQLRPLSYVRLSEKlgIDSTRISRILRRFPLVFSDGTieLSEL-CPKIRATCCHFV-NDVIKSE-KILIQEGSIQGPLSDSEIARRVEdgTIIISRRTVAHIRRTLGIP---------
232 UniRef50_B5SFM8 Putative rna polymerase sig... 95 5e-18 1 42.3% 1:111 1:111 MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARIGADGSVSALQSNSATPPPTESPPPAANGSDHADTAEASYENGSDFDSDFLE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
233 UniRef50_A8ESG9 Putative uncharacterized pr... 88 1e-15 1 16.3% 317:469 81:229 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EYKKEIKNNYHLKLLNINIKHETLFNLITMLFSSQKLFLDTGhlDRKVFIETYVKEYNslDLSVLSKILNNTHYEQDGYIYKLSHLFPKKT------FIYSLYIKILLSTKIDLKN------DLEIAKQLFeyNVKISRRTVCDIRNKYLIPN--------
234 UniRef50_D0R1Y0 Putative uncharacterized pr... 69 3e-10 1 37.7% 413:473 8:68 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNLTQNQLERMLKDFIKLEDPQKPLSDEKLVNKFKEKEISISRRIISKYRKKLGIKNSYQR----
235 UniRef50_Q18CC4 Putative transcription anti... 64 1e-08 1 33.3% 421:477 2:53 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RQRIKNLIENEDKKNPLTDEAISSRL-----NIRREDVTFLRNELKIEDSRQRRKVV
236 UniRef50_B0K7D9 PTS system transcriptional ... 63 2e-08 1 25.9% 422:475 3:51 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRIFEIIQKEDKKNPLTDDQIASIL-----NIKREDVTQFRLKNNIPDSRERRK--
237 UniRef50_A6LPX9 Sigma-54 factor, interactio... 61 1e-07 1 29.1% 421:475 1:50 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQRLIELINSEDKKNPYTDQELAEFLS-----IPRLKVIQKRNELNIPDSRDRRK--
238 UniRef50_D0GPK3 Transcriptional regulatory ... 61 1e-07 1 26.9% 422:473 5:51 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EMIEEIIKKEDKKSPLTDEEISEKLG-----ISREIVTKIRNEKEIPNSRDR----
239 UniRef50_A6LWC3 Sigma-54 factor, interactio... 59 4e-07 1 28.6% 420:475 2:52 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LENKILDLIENEDKRKPLTDSDIAKL-----VNTTREYITQFRTEKNINNSRQRKE--
240 UniRef50_A6LQU8 Sigma-54 factor, interactio... 59 5e-07 1 29.1% 420:474 3:52 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LENKLINIINTENKKNPLTDVQMAKFLG-----VARESITNLRKELNIANSRQRR---
241 UniRef50_UPI0001854675 RNA polymerase factor sigma... 58 1e-06 1 27.8% 149:220 1:70 ----------------------------------------------------------------------------------------------------------------------------------------------------NNEGYFEENIEERAKILG---VESEVYEKVRKRFSYLNPAGIGARDVKEGFLFQLESRELdnKLYEETRKII-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
242 UniRef50_Q185K2 Putative sigma-54 interacti... 57 2e-06 1 25.5% 421:475 6:55 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDKILREIQREDKKNPYTDQELAEML-----NVARSEVISVRKKNNILDSRERRK--
243 UniRef50_B6FWC4 Putative uncharacterized pr... 56 2e-06 1 21.8% 421:475 1:50 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKKILLEIQNEDKKNPYTDKELSEILG-----ISRGDIVQFRKINNIPNSRDRRK--
244 UniRef50_Q92ZL5 Putative uncharacterized pr... 55 6e-06 1 45.2% 437:467 2:32 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLDDDIVDVLKKTGVDIARRTVAKYRGAMNI----------
245 UniRef50_B8D051 Transcriptional regulator, ... 47 0.002 1 44.0% 364:388 2:26 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLTLKDIAKIAGVAESTVSRAINNK-----------------------------------------------------------------------------------------
246 UniRef50_B3N145 GF15945 n=1 Tax=Drosophila ... 46 0.003 1 15.4% 13:148 10:150 ------------QILSVQVQNAIRmlQMTSHDLRqeLEEQLMDNNFLLDEMRRRGpeTGELEWEDDPDGEEDFERSCRDVALRIETITEELRATDRLLERTRLDLEKNK-EVLIVYEEELQRHL--QL------TRILVVLQYILEFI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
247 UniRef50_B4RR56 Putative RNA polymerase sig... 46 0.003 1 31.4% 5:39 44:78 ----IGIKLKQTQQLDQRLQQSLRVLQMPGIELEREVEN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
248 UniRef50_B8IH39 Transcriptional regulator, ... 44 0.013 1 30.8% 336:387 150:200 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RRSALERVAAFLAEIER---RSGEafDLPMTRRDIADYLGLTIETVSRAVSQ------------------------------------------------------------------------------------------
249 UniRef50_B5H8Z9 Transcriptional regulator n... 44 0.017 1 16.2% 111:283 26:197 --------------------------------------------------------------------------------------------------------------GPPEEQQPAPAERVLALLGGHRLSPGQRRIAQYIIDHLTEAAFL--SITDLAERVGVSQPSVTRFATSLGY--------SGYPALRE--ALQPIALSAVAGSPETRAEIRRNELQAAVDAEIQNL-ENLRRVLADTDRVLGIGRELALspgLRISVSLAEyiHPDVRLVTRGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
250 UniRef50_UPI0001C35EE1 transcriptional regulator, ... 43 0.018 1 31.0% 365:393 6:34 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTIKDVAEACGVSIATVSRVLNDNYYVTP------------------------------------------------------------------------------------
251 UniRef50_B1L9I7 Transcriptional regulator, ... 43 0.019 1 40.7% 362:388 1:27 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKKATLKDIAEYFGVSISTVSRALSGK-----------------------------------------------------------------------------------------
252 UniRef50_Q16925 Transposase n=3 Tax=Anophel... 43 0.020 1 21.8% 366:475 24:121 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SYTEIAMLTNINRNTVARVIQ-------RYKYEGR---VSNLPRKGRPSVCTDRMRRAIKRLVDAEPE---ISAQSVAIVLNErgIAISCETVRRYIHKFGYKAYNRRKK--
253 UniRef50_Q1WRA6 Transposase ISLasa15, IS3 f... 43 0.031 1 30.6% 419:467 29:75 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIKDLIMEI--WEESQHLYGAPKITAKLRKMGIQISERTVGKYMKELKI----------
254 UniRef50_C6Y3T7 Periplasmic binding protein... 42 0.055 1 41.9% 364:394 4:34 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PATLKDIAIALGLSTSTVSRALRDTYEISPK-----------------------------------------------------------------------------------
255 UniRef50_UPI0001854ADA RNA polymerase factor sigma... 41 0.075 1 19.1% 5:72 4:71 ----LRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKNFSDRFSAKKSSDHLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
consensus/100% .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
consensus/90% .......................................................................................................................................................................................................................................................................................................................................................................................................................................h..hh.........tD..l...h......h.pt.l.phR...............
consensus/80% ..............ht......hthLths..ph...l.....tNshh.......................................................................sh.t.l..ph...........hh..hht.ls.tGah......h.............h..hh.hl.thcP.Glhu.sht-sh.hQh...............hh.t.h..h.ttt...l.t.hth..tth.thht.ltthpshPs..h..t....h.P-hhh...ttth.h.h.......h.hp..h...............htt.htth..hhpslp.R.tTl.plht.lht.Q..ah..t...htsh.hpplAt.hthp.STlSRhhttKhh.s..Ghh.hc.hFs..h........s...lpthltthlttEs.ttshoDptlsthltttsh.luRRTlsKYRp.htl.ss..R...
consensus/70% ...t...p.t.p..hs.ph.pslplLphs..-Ltt.lpp.h.pNPhl-......................................................................sl.phLh.Qlt...hs.t.h.hs.hllttlsppGalt.s.tplht.h....hp.tthtthlthlpph-PsGlsApsltEsLhlQltt....t.....h.tll.p.hp.ltptphttlhp.hths.ppltthht.lppLpPtPu.thttt.sthl.PDlhl...tsth.l.hstt.hPpl.lst.a.p.htt.tttt.tthhppphppAthhhpslppRtpTlhplsp.llphQttFh.tG.thhpPhhhpplAptlshc.STlSRshssKahtsshGhh.h+.FFsttht..tttthosttl+thlppllttEs.ppPhSDpplsphLtppGltluRRTVuKYRpthtIssut.R+..
|
MView 1.51.1, Copyright © 1997-2009 Nigel P. Brown