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Reference sequence (query): batch____
Identities normalised by aligned length.
Colored by: property
HSP processing: ranked
Search cycle: 2
                                                                                                      1 [        .         .         .         .         :         .         .         .         .         1         .         .         .         .         :         .         .         .         .         2         .         .         .         .         :         .         .         .         .         3         .         .         .         .         :         .         .         .         .         4         .         .         .         .         :         .         .      ] 477
    batch____                                              bits   E-value  N 100.0%   1:477             MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVPLEDILESIGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV    
  1 UniRef50_P06223        RNA polymerase sigma-54 fac...   583    1e-165  1  88.9%   1:477   1:477     MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVETKEAEDRESLDTVDALEQKEMPEELPLDASWDEIYTAGTPSGNGVDYQDDELPVYQGETTQSLQDYLMWQVELTPFTDTDRAIATSIVDAVDDTGYLTISVEDIVESIGDDEIGLEEVEAVLKRIQRFDPVGVAAKDLRDCLLVQLSQFAKETPWIEEARLIISDHLDLLANHDFRSLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKVNDRWVVELNSDSLPRLKINQQYAAMGNSTRNDADGQFIRSNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV    
  2 UniRef50_C9XTZ3        RNA polymerase sigma-54 fac...   581    1e-164  1  88.9%   1:477   1:479     MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDIHDEIATQETQDSEGLDTAEALEQKEMPDELPLDASWDEIYTAGTPSGTGTDYIDDELPVYQGETTQSLQDYLMWQVQLTPFTDTDRAIATAIVDAVDDTGYLTVTVQDILDGMGDNdiGPEEIEAVLKRVQRFDPVGVAARDLRDCLLIQLSQFSAETPFLAQARQIVSDHLDLLANHDFRSLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNADSIPRLKINQQYAAMSGSARNESDSQFIRSNLQEAKWLIKSLESRNDTLLRVSRCIVEQQQAFFDQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSMLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV    
  3 UniRef50_P0A171        RNA polymerase sigma-54 fac...   568    1e-160  1  54.5%   1:477   1:497     MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEdaEVQDNSFQESTVSADNLEDGEWSeeLPVDTAWEDIYQTSASSLPSNDDDEWD-FTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEEICAGfpELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTEAKRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVVPDVIVRKDSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYELKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKYRESLGIAPSSERKRLM    
  4 UniRef50_P08623        RNA polymerase sigma-54 fac...   544    1e-153  1  56.8%   1:477   1:502     MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLERQEDAEDYDSPdaASEDGGTLEEGDWHERIPSELPVDTAWEDIYQTSASNLPSTDEDEWD-FTTRTSTGESLQSHLLWQLNLTPMSDTDRLIAVTLIDSINSDGYLEAALEEILASlpELGVELDEVEMVLRRIQQFEPAGIAARDLSESLLLQLRQLPPDTPWLEEAKRLAKDYLDLLGNRDFTQLMRRMKLKEEELRPVIELIQSLNPRPGAQIESSEPEYVVPDVIVRKHNDRWLVELNQEAVPRLRINPHYAGFIRRADASADNTFMRNQLQEARWFIKSLQSRNETLMKVSTQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYELKYFFSSHVSTAEGGECSSTAIRAIIKKLIAAENPKKPLSDSKIAGLLEEQGIQVARRTVAKYRESLSIAPSSERKRLM    
  5 UniRef50_A0Z7G1        DNA-directed RNA polymerase...   539    1e-151  1  51.2%   1:477   1:475     MKQSLQLKMGQSLALTPQLQQAIKLLQLSTLDLQQAIEETLESNPLLEREEDGDSHEETQSSQSD-VDFTTPVAEPNSADELPVDTRWEDLMPSSAPPPSSPDGEMGQFAD-RDAEPETLHDQLHWQLNLTRFSVTDHMIATAFIDAVDANGRLTQTPEEILDALRDPEIELDEVLAVLHRLQHFEPTGIFASDLRECLLLQLRQMDEEVPHRNTAGAIANRHLESIATADPRQLSRRLRTTPEDVIGALNLIRSLDPTPGTSVGESTTEYIIPDVFVLRKNGHWRVELNPDIAPKLRINALYSELVGQTGSASDKSYVRENLQEAKFFMTSLHNRNETLLKVASKIVEHQREFLELGEEAMKPLILADIAQQIGMHESTVSRATTRKYMHTPRGIYELKFFFSSHVATIEGGERSSTAIKALIKKLVQGENTKKPLSDNKLGVLLEEQGIIVARRTVAKYREQLNIPPSNERRRLL    
  6 UniRef50_Q1YU16        DNA-directed RNA polymerase...   536    1e-151  1  48.9%   1:476   1:490     MRQGLQLKISQQLTMTPQLQQAIRLLQLSTLDLRQEMIEQLYSNPLLEMDEDIPESPGQDAdeRNSEQNPEYEWNDEIPKDVPVDANWDDVYSPPTTAASSSGGE--VNLEQVFQVTESFQGHLEWQLNLTPFSDRDREIASAFIDSIDSSGFIAAELSDITAHIHYDDIeeDELVAVLHRLQQFDPPGVFARSISECLTIQLNQLSPETQYLQSAKHLVDGFLQDIASVDSARLAKKTGLEINELQGALQLVRGLNPRPGESLSSNDVEYIVPDAYVEKIKGRWRVKLNDSNMPRLRINDSYSSLIKRSDSSDQNQFLKDNLAEARWFLRSIESRNETLMRVAMTIVELQRGFLDHGPVAMKPMVLSDIASKLELHESTISRVTTSKYLATPQGIFELKYFFSSHVSTAGGGECSSTAVCAILKELIGAEQPEKPLSDSKLTSMLEQQGIQVARRTVAKYRESLGIPSSSQRKRF-    
  7 UniRef50_P24695        RNA polymerase sigma-54 fac...   532    1e-149  1  48.3%   1:476   1:475     MKQGLELKLGQHLAMTPQLQQAIRLLQLSTVDLQQEVQGMLESNPLLDEETGDEGGGGPIPETVELPSEedLAAENILPDELPVDSQWDDIFDMGTSGSGNGSDEDLPDFESRNSRTQSLQDYLRWQADMTHFTADERNMAELIIDAIDERGYLADSLEDLAATMN---VQEDALLAVLLRVQDFDPPGVGARNLSECLLLQLKQmeKDDAHVLLAQRIVKDHLQALGRHDYPRLCTVLGVDEAALRAAMALISALNPKPGEDVGTESTEYVIPDVIVRWAGSRLRTDLNPEAMPKLRINRHYADM--AGGKDAAHKYIQDQLNEARWFIKSLQSRQDTILKVARAIVERQKDFFANGPESMRPMVLRHIADAVEMHESTVSRVTNQKYMITPRGLYEFKYFFSSHVGTDSGGSASATAIRALLIKMTQAEDAQHPLSDAEIARVLADQGIQIARRTVAKYREAANVPPASQRRRL-    
  8 UniRef50_Q2LSN3        RNA polymerase sigma-54 fac...   529    1e-148  1  38.0%   2:477   4:487     -ELKQNLKLSQQLIMTPQLQQAIKLLQLSRMEMIDVINQEMEENPLLEDAPADEYDETErtPEREELRGIERTEEITGEGDGKEEFDWNSYLEDYGTFGTTYddGEAPNWDNVLTEKSTLTDHLMWQLKLSRLTEQEMRVGEQIIGNLDANGYLAASIEEIA---GLENVSEKDVETVLKKIQEFDPPGIAARNLQECLLIQVKMLGIQN---QLVEAIIQDHMKDLEIKNYNHISRKNKVPVDDVFQAVMIISNMDPRPGSVYNEEKIQAIIPDVYVFKSGDDYKIVLNDDGLPRLRISNFYKEIMgdSNSESGRKYIRERVQSATWLIKSIQQRQRTIYKVAESIVRHQREFFDRGINYLKPLVLRDIAYDVEMHESTISRVVTNKYMYTPRGIFELKYFFSSSIQRKSGEAIASKSVKEEIRRVIGAEDPLHPYSDQEIVSILESKGIKIARRTVAKYREMMNILPSSRRRRYF    
  9 UniRef50_P28615        RNA polymerase sigma-54 fac...   528    1e-148  1  46.4%   1:476   1:493     MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTENPLLERENDWIESPLRVAADGseARADGAADDDSYGDSGNGDDYGSSDWSLDDFARRPQGDEDEKTPMQLREAEPTLREYLMEQLTPLKISARDKGLAIFLIESLDDDGYLSASLEEIceLPEELEFEIEEVHAILTLLQSFDPPGVGARNAAECLALQLRRLTH--PQRELALNIVTNHLELLAVRDYTRLKKALQVDEAALKSAHELIRSLAPYPGHAYSRPEADFVVPDVFVRKGGGGWIAQLNPDVMPRLRINDMYAQILRGAKGESGTAGLQQKLQEARWLIKNIQQRFDKILRVSQAIVERQKNFFSHGEIAMRPLVLREIADTLGLHESTISRVTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEDPRNPLSDSRIAELLGEQGFVVARRTVAKYREALKIPAVNLRKSL-    
 10 UniRef50_D0LNA6        RNA polymerase, sigma 54 su...   527    1e-148  1  36.9%   1:477   3:494     MEMRQELKLSQQLVMTPQLQQAIKLLQLSRMELVDLVREEMLENPVLEEDSedAEQVTRQVEEAGHTELPVAESNKDTASEVKADddWESYLDDYSSGPsrPDNDDLPSHEATLTRSESLSEHLLWQLKMSAMDETHMAVGEVIIGNIDASGYFKEplEDLASEC---EVSVDEAEEVLMKIQTFDPVGVGARSLAECLLIQAMHDGQDD---ELVVKIIKSHLPNLERKNYQAIARDLKQPLEEVYEAAKVIMEFDPRPGRQYSSEDPHYITPDVYIHKVGDRYFVVPNDDGLPKLKISSFYRSAL--SKNGNAKDYIQDKLRSAQWLIRSIQQRQRTIIKVSESILKFQREFFDRGIAHLRPLILRDVAEDIGMHESTISRVTTSKYVHTPQGIFELKFFFNSGISRTDGDDLASQAVKSKIKKIIGDEDPKKPLSDQKIAAQLKSGGIAIARRTVAKYREQMGILSSSKRKQVF    
 11 UniRef50_A0LCX7        RNA polymerase, sigma 54 su...   526    1e-148  1  44.1%   1:476   3:507     LGMELKLRMGMQLVMTPQLQMAIRLLQMSSMDLQEYLQEELEKNPLLEREDENGNAVDGDTadGFQIDEPQTPEVTHLSEDLPLDAEWSDVYSDAGSNFESHNNseAPPLENTLVRNDTLSDHLIWQLGLSARDEHERALGMALVDAIDENGYLTAPLESFQETTG---ASLDDLEDALLLIQSFEPSGVGARNLAECLLLQLKA----DRMAVAPYTSLLAHLDDLARRDFRKLSRVLKLSEEDLASAVAVIHGLDPKPGLAYGSDQTSYVVPDVYVRKQNGKWVVEINPETQPRLRINRHYQDQISRYASADDKRFMTESARNAQWLIKSLEQRSSTIYRVAESIVRFQEDFLDKGPEYLKPLILKDVADDIGVHESTTSRVTSNKYMHTPRGIFELKYFFSSSLTSQSGESHSSEAVKFKIRKLVESEPLRRPFSDEKLAKMLKEQGINVARRTVAKYREALNIPSSSRRKQL-    
 12 UniRef50_B3E461        RNA polymerase, sigma 54 su...   525    1e-147  1  34.2%   1:477   3:482     MEMRQQLKMTQQLVMTPQLQQAIKLLQMTRIELQDVVRQELEENPILEESSELEEVREGEtaELPDEALANTDSFQEVEAGEETLRDWDSYLDGYNYTSgsGDDDDKLSFENLLTRKGTLFDHLHWQLQMGKYSDEEQRVGEEVIGNIDDDGYFCSTIADVAVVC---DVPEPVVETMLERIQEFDPSGVGARSLQECLLIQARSLGME---GSVVEAILLRYLPEVESRNYKQIARSLKVELEHVLAAIRVIAGFDPRPGRLYSSDEVHYISPDIFVHKVGDDYVVLLNEEGLPNLRLSPFYLEaaGGSMDAKAEEYVGDKMRAAQWLIKSIQQRQRTIFRVAKSIVKFQREFLERGVEGLRPLVLRDVAEDIGMHESTISRVTTNKYMQTPQGLFELKYFFNSGLSTSDGESVSSESVKNRIKDIIDKEDPSKPLSDQKIAEMLSDATVNIARRTVTKYREMMRIGSSSERRRHF    
 13 UniRef50_C8VY02        RNA polymerase, sigma 54 su...   520    1e-146  1  34.9%   1:476   3:472     MGYGLHVEQTQKLIMTPELRQAITVLQLSSLELSMYIDQQLQENPMLerEDDLDRIEENEGAEGDASGGEEELSRQE------CDVDWEEYFHDSDLDLGRREKLAEQsyENFLTQAPNLTEYLMMQLNLSRCGDYLKAIGEYIIGNVDHNGYLHVSVKEIAEQL---EVSQSKVEQALSVIQSFDPLGVGASSLQECLLIQVRYLNIKN---KLVAELIEKYLPDIAKGRLNQIAQQLGVAVTEVQEAADIIKTLDPKPGRNFSATnvRYIVPDVIVERVEGEYIILVNDSSVPRLTINTAYRSVLTQDkdLQTRRFVESKLNSAAWLLKSIEQRRLTLYKVASCLVDLQKDFMEYGVKHLKPLNLKTVAEIVGLHESTVSRATSNKYIQTPQGVFEMKFFFSTGLTSAGGGMTSAESIKKTLRELIASEDARKPLNDQKISDIFAERGIKISRRTVAKYRDELNIPPLKQRKRY-    
 14 UniRef50_A5CYP0        DNA-directed RNA polymerase...   520    1e-146  1  33.0%   1:476   3:471     MGYGLNMEQTQKLIMTPELRQAITVLQLSSLELSMYIEQQLQENPMLELTDDDYGREE---------EFEPTVEPEPDGGGPEYDLDWEEYLQESSDDPgrWQDQQEYSYENFLYQMPTLTEHLTTQLNLSPCRGKDKLIGEYLIGNIDENGYLRVPLKEVAACLN---VSTSRVFKVLKVIQGFDPPGVGARSLEECLLIQVGQLGIKNEILN---KLIKEHLSDLAKGKLNRIAQSLGVTVQEVQKAADVLRTLDPKPGRNFSnnDTRYIVPDIVLEKVEGEYVILINDVAIPRLTINSTYRSVLSSncDSGTRRFVESKLNAAAWLIRSIEQRRLTLYKVAKCLVDLQRDFLDYGVKYLKPLNLKKVAEMVGLHESTVSRATSNKYIQTPQGVFEMKYFFCTGLNNTAGNMVSAECIKKMLQEIVAGEDARSPLNDQKISELFRQRGIKISRRTVAKYRDELGIAAIRKRKRY-    
 15 UniRef50_C8R228        RNA polymerase, sigma 54 su...   520    1e-146  1  37.9%   1:475   3:497     LELRQSLKLSQQLVMTPQLQQAIKLLQLSRLELMETVQQELEVNPVLEEGLDLYEDGGNPADdnNGPEEELGRSEPEQTAEISMDsdWGNYLNEyySGAAGRDDDAPPSRLEIMSVRPSLQSHLQWQLNLSHISDREKEIGEFIIGNLDENGFLLVSPEEI---CSQTDCTPAEADHLLSRVQEMDPAGVGAQDLRHCLLLQLARLEAADS---LAARIVRDHLSLLETRNYPGLAKATGASTAEVSAAVEVITGLNPRPGRLYSDADPVYIVPDVYVYKLGEEYVIMLNDEGLPRLRISNYYRDILDktAPGATKDYVQDKLRSAMWLIKSIQQRQRTIYRVVESLLKFQRDFFEHGVNKLKPMVLRDVAEDIGMHESTISRVTTNKYVHTPQGTFELKYFFNSTISTEAGDGMASESIKQRLKSIVQHEDRKKPLSDSAIAAVFSRDGIRLARRTVAKYREQLGILPSKLRRR--    
 16 UniRef50_Q6MPK9        RNA polymerase sigma-54 fac...   517    1e-145  1  37.9%   1:477   1:478     MALRQTMNLSQSLVITPQLQQAIKLLQMSRMELESAVRSELEENPILEEAESaeEDLQRTKEAANEVEHSETPDQQNIQDPQKQDeeWESYIEANQKPPQSggSEEIMNYENVITASQTLHDHLYWQVKMNGFSEEEERAADALIGAIDDDGYIKVPLEQIAEE---EKVDLALLEDTLTLIHEFDPPGVGARDLQECLLIQAKHMEEDT---HDLVTLIKNHVKDLEKKNYEAIAKALNRDVEDIVEICKIIYAMDPKPGRAFVSSDTHYVTPDVYVYKVGDDYVVSLNEDGLPRLKISNFYKNMLkkTTGDKTQDYIQEKLRSAVWLIKSIHQRQRTIYKVTESIVKHQREFFEKGSEHLKPMVLRDIANDIGMHESTVSRVTTAKYVHTPQGIYELKYFFNSGISSSDGDSLASESVKIKIKDLVAKEDPKNPLSDQKIVDLLKVEGIQIARRTVAKYRDVLKILPSSQRKKYF    
 17 UniRef50_D2UEM7        Probable rna polymerase sig...   515    1e-144  1  41.0%   1:476   1:484     MKARLQTSLGQHLVMTPQLRQAIKLLQMSSAELEVELAAAVESNPLLEWSEDaeHTDSQEASGAAADGDTLTPVADDHAEASPADSGEDWTTTDPAWSGGSgdDDDTSSLAERVAEPETLIGHLLWQLHLSPLSARDRSIGVALIDALDGDGYLREPLTAIAETlpNIAAGEDEILTVLHQIQRFDPTGIAARSLEECLTLQLGMLPESTPGLELAHTIVNGSLEKLPRSGIAGLAHALKRPVADVDTAVALLRSLDPRPGKQIGegSDTYVVPDCVVWRQRGVWHAALSAHAQPKVTIHRGYERLIRQCGESDAG-YLRGQLQEARWLLKSVEARGETLLKVTRCLLRQQAGFLEFGEQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPLRAFFASGIDTDSGGEASSTAIQAMIRRLIETENPRKPLSDAKLADLLKNTGVPVARRTVAKYREAMNIPASHERVRI-    
 18 UniRef50_Q5WZ64        RNA polymerase sigma-54 fac...   515    1e-144  1  48.5%   1:474   1:460     MKPTLQIGIGQHLTLTPQLQQAIRLLQLSTFDLQQEIQLVVESNPLLEATPVEEKEDAQINTNQNHDEYS--------------DFQWSQLYNN--LNKRNNFEENDYNFDNLHCTTTNLQDHLNWQLDLTPMSDIDRVIATTIIDAINDDGFLTIPVAEIHASLNSDDfdIEEIEAVRHRLQLFDPVGCASVNLAETLVLQLEQLPLEPKLLATAKKVILEDIELLGQHNYRQLMKNHQISEKTIHEILQVIHKLNPKPGSLIHQDNIEYVIPDLTVKKIDNQWKVFLNQDILPRLSINSQYAALIQRANNSLDNQFLKHNLQEARWFLKSIQSRQETLLKVATCIMEYQHGFLEFGEEAMKPLILNDVASALDMHESTVSRVTTQKFINTPRGVFELKYFFSSHVNTDNGGECSSTAIRAVIKKLISAENRKKPLSDSKIAQLIGEQGIKVARRTVAKYREAMGIPPSNERK---    
 19 UniRef50_P77998        RNA polymerase sigma-54 fac...   514    1e-144  1  42.2%   1:476   1:478     MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASDIAVDSSPSASTEQPQREeaPAERDEDWSQDELQWTGSGSGGSFDDDESGDAAERVAESETLADHLLWQLHLSPLSPRDRQIGAMLIDALDEDGYLREPLSAILETLAlaAVDEADVLTVLHQIQRFDPVGVGARTLGECLALQLGVLDADTPGRELALQIVAGPLERLPRSGVAGLAHELKRSTADVEQAVQLVRSLDPRPGKQIGdsQDTYVVPDCVIWRQRGVWRAALAGRAQPKVTIHRGYENLIRSCGESDAG-YLRGQLQEARWLLKSLEARGETLLRVVRCLLEHQAGFLEFGAQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIALRAFFASGIDTDSGGEASSTAIQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRI-    
 20 UniRef50_P30333        RNA polymerase sigma-54 fac...   513    1e-144  1  38.1%   1:475   3:513     LTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLTTFVEEELERNPLLERANDEASGGEAPAEAGQFSDSDGGHNDEpaEIEQTLDTGLDNVFSeyTEWGGGASGDEDYNLEAFVAAEVTLGDHLAEQLSVAFTAPAQRMIGQYLIDLVDEAGYLPPDLGQAAERLG---ASQQEVEDVLAVLQKFDPPGVCARNLSECLAIQLRELDRYDP----AMQALVEHLDLLAKRDIAGLRKVCGVDDEDIADMIGEIRRLNPKPGMKFGAARLQTMVPDVYVRPgdGGWHVELNSDTLPRVLVNqyYSELSKKIGKDGDKSYFTDALQNATWLVRALDQRARTILKVATEIVRQQDGFFTHGVAHLRPLNLKAVADAIQMHESTVSRVTANKYMATNRGTFELKYFFTASIAsdGGEAHSAEAVRHHIKQLIDSEAPAAILSDDTIVERLRASGIDIARRTVAKYREAMRIPSSVQRRR--    
 21 UniRef50_Q1DDF1        RNA polymerase sigma-54 fac...   513    1e-144  1  36.3%   1:477   3:505     MELKQSLKLAQQLVMTPQLQQAIKLLQLSRMELLEQVREEMEQNPLLEQPDEQAPGDVGDKEPGEASLEADNMeeFKADGEGPPEIDWEQYLNSyaSNKGNVATDDMPSFEANLVKKADLVDHIQEQLGTLRLNDAERRIAMLILGNLDDDGYLKLPEVdlIRLANEADVPMHVAERTLRRIQMLDPRGCGARDLQECLLIQLQ--GIREPHAPLLGLIIKRHMKYLESKNLPAIAKDLKVTLEEVVGAVRLLPKLDPKPGRNFSGDDAQYISPDVFVYKMGDDYTVVLNDDGLSKLRISGTYRNALKTggPGQTKDFIQDKLRSAMWLIRSIHQRQRTIYKVTESIVKFQRDFLDKGIAYLKPLILRDVAEDIGMHESTVSRVTTSKYVHTPQGIFELKYFFNSSIARVSGEDTASEAVKHHIKQLVAQEDARNPYSDQKIVELLRSQGTEIARRTVAKYREVLGILPSSKRKRYY    
 22 UniRef50_B5EEZ6        RNA polymerase, sigma 54 su...   512    1e-143  1  37.1%   1:477   3:515     IEMRQQMKMSQQLVMTPQLQQAIKLLQLSRLELQDVVRQELEENPILDEVIEQEEIREPEQIELREKEAEPEAAASDFQeeETREADWDSYIDGYNYSSGEqdDEDRPSFENLLTKKSTLFDHLMWQLSLTRLTEREIVVGAEIIGNIDEEGYLRASLEDVASalGSDACEEelVDSVLKRIHEFDPVGVGARDLRECLLIQVGSLGM---GGSLVESLLRDHLKDLESHKYKQAAKVLGVEVNDILAATRIIAELDPKPGRVFGSDDVQYISADIFVHKVGEEYVVMLNDEGMPNLRINPIYAPDAKSSrdKVAEDYIGEKMRSALWLIKSIQQRQRTIFKVAKSIVKFQREFLDRGIEHLRPLVLRDIAEDIGMHESTISRVTTNKYMQTPQGLFELKYFFNSGISTGEGDFIASESVKSKIKELVDNEDSKRPYSDQRLAELLSDHNIVIARRTVTKYREMLRIGSSSERKKHF    
 23 UniRef50_B8DJR2        RNA polymerase, sigma 54 su...   512    1e-143  1  38.6%   1:477   3:477     LELRQQLKLTQQLVMTPQLQQAIRLLQLSRLELVETVQQEMLENPFLEEAQDEGPQVETPDPREAATAAADVAYDREIAR----DADWEDYLGDFASTSRQSTVRETEMPEEMTSFepSLEGHLMWQLRLSSLTERQKDIGEVIIGNIASSGYLHATVDDIAEMAG---VTPGEVESVLHAVQRFDPVGVSARTAQECLLVQIEMLGYTRD--KVLVELVRDHLEDLEKRRYKPLLRKFRLTMEDLKEYLDLIQTLDPMPGASYGGGDPQFVSPDVYVYKYDDDFIIMLNEDGLPHLQLSTMYERSAAAAASAGEREYFQEKMRSASWLIKSLYQRQRTLYKVVESIVKYQRGFFEDGVSRLKPLILKDIADDIGMHESTVSRITTSKYVATPHGIMELKFFFNSALELDDGSQVGSESVKALIKKLIADEDPREPLSDERIGEILKDqkVNIARRTVAKYRTAMDIPSSSKRKELF    
 24 UniRef50_B0K876        RNA polymerase, sigma 54 su...   510    1e-143  1  35.7%   1:476   3:454     MEFDLKLQQTQKLIMTPELKQAIEILQLNSLELNALIEQELETNPLLEKEEVIEEDIYESNDFTELAKYIRETEERMYYDDSDDEEIEEVNY------------------ENFVSTKPSLTDHLLFQLHITPVSPKIQKICEYIIFSLSPSGYLREDIKDIAEIL---ECTEEEVLEGLSIVQSFDPPGIAARNLQECLKLQLLA---QDSYKGIVKELVDYHLEEIAEGKYSYLAKLYNISLKEVQQAVDFIKKLNPKPGSSFSStdVRYIVPDVEVIKREGEYFVIVNDSVTPKLKINNYYHSILNSH-DEEAKKYINSKLQSAMWLIKSLESRKETLYKVVKAIVELQRDFLDKGINYLKPMTQKQIADIVGIHESTVSRAINGKYVATPRGLFELKFFFQSGISNKNGNEFSAETIKNLIKKLIEEEDPTNPLSDQKIADILKEKNINISRRTVAKYREECNIPSTIKRRRY-    
 25 UniRef50_D1RJS1        RNA polymerase sigma-54 fac...   507    1e-142  1  49.4%   1:474   1:461     MKPSLQLSISQHLTLTPQLQQAIRILQLSTIDLQQEIQLVLESNPLLEATPNEDKEE-------------IAIDETRQQENDQSDFQWSELYQSSDKRTSFDDVD--YNFDNLHCTTTNLKDHLKWQLNLSPMSDIDRAIATAIIDAMNSDGFLSMGITELHASLTSEelDLDEIEAVRHRLQLFDPVGCACINLAETLLIQLEQLPQDTEHLALAKKIITKDIELLGQHNYRQLMKNHQITEKTIDSVLKIIQKLNPKPGNLIHEDITEYIIPDLTVKKINNQWQVHLNQSVLPHLSINNQYASLIQRADNSADNLFLKNNLQEARWFLKSIQSRQETLLKVATCIMQYQQGFLEYGEEAMKPLILNDIAIALEMHESTISRVTTQKFIHTPRGVFELKYFFSSHISTNVGEECSSTAIRAVIKKLIAAENRKKPLSDSKITQLLEKQGIQVARRTVAKYREAMGIAPSNERK---    
 26 UniRef50_Q0ATI6        RNA polymerase, sigma 54 su...   505    1e-141  1  37.7%   1:477   4:500     LMQKLDMRQGQSLVMTPQLQQAIKLLQLSNIELAEFVEGELERNPLLERDDSGESAESqeEGQGEPRELELAAPSADANDSIDADVdgDDSKSdhTSGGSRGPASEDYDAIANSSRDISLADHLHEQLSMATGDPVDRLIGAHLIDLADDDGYMRSDLDEISAQLG---VERARVEAVLDLTQTFDPAGVMARDLPECLALQLKDKDRLDP----AMATLLDNLERLAKHDYVALKSLCGVDSEDLDEMISEIRALTPKPGHAFGSDSTRAVEPDVFIRQsdGSWQVELNSETLPRVLVNNSYFNEISaaKSETDKTFITECSQNASWLVKSLDQRARTILKVASEIVRQQDMFLAHGVAYLRPLNLKTVADAIGMHESTVSRVTSNKYVATARGMFELKYFFTSAisAGGGEAHSAEAVRHRIKLMIGQESADGVLSDDSLVEQLRDEGIEIARRTVAKYREALNIPSSVQRRRML    
 27 UniRef50_C6WT04        RNA polymerase, sigma 54 su...   505    1e-141  1  45.0%   1:476   1:525     MKQGLQLKFSQNLSLTPQLQQAIRLLQLSTLELNQEIDVLMQTNPLLERGDDTEDepEFENFDAEYAESASEFNGAESAnsAEFNDEFDEFSNGSRWDENTMPADDDSDFKPQETLQTSLREHLLSQLKLMPLSERDQSLALMLVDSINDDGYLEQSLEEIAELMPEeeIDAIELQTALRHVQHLDPPGVGARSLSECLLLQLAVLPKSTPHLAMADLVAKHHLQVLASRDFVKLRKELGCDEATLKQVQQLITSLNPRPGSAFShgSEHYIQHEVIVKKVKGIWIASLNDSVIPKLKINQLYAGILKRNRDS-SSQYLQSQMQEAKWMIKNIQQRFSTILRVSQAIVDRQRNFLEYGEVAMRPLVLREIADELDLHESTISRVTTNKYMLTPRGIFELKYFFGSSVATDAGGTCSATAIRALIKQLVDQENPRKPYSDNQITDLLAKQGIVVARRTIAKYRESMNIAPASLRKSL-    
 28 UniRef50_A6TU36        RNA polymerase, sigma 54 su...   504    1e-141  1  34.7%   1:476   3:462     MGYNLQLEQSQKLIMTPQLKQAIQILQFPTIELDQYIQDQIEKNPVLELSNEKEPGRELDKG----------------IEDKKKEVDWKEYIKDMQNHGYshSDENEFNYENIISSDVNLQEHLLFQFHVTLLDREYNEIGEYIICNLDENGYLTLSIEEIAKDL---RVGINLVEDVLHIIQTFEPPGVAARNLTECLTLQLNSLAIED---QRVYDIVEKYLELMASNKYPVIAKKMKISVNKVQEICDFIRTLEPKPGREFATNESSYVIPDVVVKKIDDEYVIIVNDYSAPRLTIRQDYQKLmnECENSETVKFLNDKFNAAAWLIKSIEQRRNTIYRVVESIMSKQRSFFEHGKKHLRPMTLKEIAEEIDVHESTVSRATNGKYVETPIGIFELKYFFTsvGGDVGVEGTSSKTIKAFISEIIQKENPKKPLSDDKIVKELATRAMHLSRRTVAKYRDDLRIPSSSKRKRY-    
 29 UniRef50_A3VRA5        DNA-directed RNA polymerase...   499    1e-140  1  37.7%   2:476   4:475     -SPKLEIRQGQQLIMTPQLQQAIKLLQLTNLELAEFVEEQLEENPFLERDERAddREPSASRDEEMARATDHFEAPTQADDTPGEAGAGDW---SGVSGRSGIADGEFDAVQNAEVQIGLHDHLTHQLHLSTTDEVTLLVGAHLIDLIDDGGYLREETEVIALRLG---IDRPFVEKTLSLIQTFDPSGVGARSLQECLRLQLRDLGELDERISLFI----DNLDLLAAHKLPALRRAVRINEEELKALIATIRKLDPKPGLAFGGEAVQLVIPDVHVTesDGGWKVELNAETLPKVIANERYFSRLSSADnaETRSFLNEHMATANWLVKSLDQRARTILRVATEIVKYQDEFLVRGIRYLRPLNLKTIAEKIEMHESTVSRVTSNKYISTPRGTFEMKYFFTPSISSKDGdaYSAESVRHRIRELIEAEDPTNPLSDDRLVTLLAGEDFDIARRTVAKYREALGLPSSVKRRRL-    
 30 UniRef50_C0G3T2        RNA polymerase sigma-54 fac...   499    1e-139  1  36.4%   1:475  24:512     LSPKLDIRQSQSLVMTPQLMQSIKLLQMTHIELDQFLDMEIEKNPLLDRIEAdgEPASGADDPTESADNDDWFQTEGAGAAENLSATFDNSLENIFPDDLGSSQEQwyDIDQVTAGRLSLSDYVAEQIVLGFSKAADRFIATALADALDESGYLRIDIVGLAHNLG---IETAEIGRILGVLQGFDPPGLFARDLRECLAIQLRLKDRFDP----AMEALIANLDLLARRDFATLQKICGVDQADLIDMLAEIRALDPKPGARFEVSVADTIVPDVLvsARDGGWAIELNPATMPRLIVNNEYYAEVSGSVKTEEKAFLTDCMQTAGWLVRSLDQRARTILKVAQEIVRQQDGFLRHGVAHLKPLNLRMVADAVGMHESTISRVTANKFMATPRGVFELRYFFTASlsSEGGEAHSSESVRHRIRQMIEAEKPDEVLSDDAIVDALKKDGVDIARRTVAKYREAMNIASSVQRRR--    
 31 UniRef50_C0GFB1        RNA polymerase, sigma 54 su...   498    1e-139  1  37.8%   1:476   3:464     MSYHLKLEQTQKLVMTPELQQAITLLQYSALELQTYVQNQLLENPVLEIDESEDTEKKTDESVEEPVQEKDS-------------IDWEEYLKDEGMEPMtrQNEDAPGFDYYLSNEPTLQEHLLFQLGLCSLTPTEKHIGEFIIGNLDQHGYLKGDFKELAMLIG---AEPREILGVLEVIQKFDPVGVGARDLQECLLLQIQEHNSPHP---LAKPIVRTHLADVADNKIKKIASELRAGATDVQAAVDFIRTLDPKPGRLAGdgDVRYVVPDVVVEKVDGEYVVIVNEQNIPRLAVNPYYRSLLGKDSESVTSTFIKTRLDSALWLLKSIEQRRITVYRVTECITRIQRDFFDQGIKHLRPMTLRQIADEIGVHESTVSRATSNKFVQTPRGLFPLKFFFASGVDDYHGTAVSSESIKCHLKELIEAENVQRPLSDQKLMELLSKRGIVVSRRTVAKYREEMSIPSSNKRKRL-    
 32 UniRef50_Q0ADR2        RNA polymerase, sigma 54 su...   498    1e-139  1  40.7%   1:474   1:485     MKPTLQLKLSTGLTLTPQLKQSIQLLQLSALELNQEISRIVQENPLLELDEdeTEGQDSSLVSSDLSTTAEANESHDIRENTEISNDwdSLYSDQgdTRRQDDEEYDQDYSRLVSKPASLREHLLMQISLRQRCERKKKITALLVDSLDDNGYFTQDLEELAKLLPVeeIDITDLKSALAYIQQLDPPGVGARNLRECLSIQLSALPDATPLRTEALKLVNEHLESVAAKNFPLLRKVLGCDETCLQSVYQLITQLNPKPGDDFNATTARYVIPDVIVTKSAKGWVAQLNSDSVPRVRVNHLYADILKQNRNEAIRP-LMEQLKEARWLIRNIDQRMVTILRASQAIIDCQQAFLEHGETAVRPLVMREIAEVLGLHESTISRITTQKYMRTPHGIFELKYFFGSHIPAETGEAHSAIAIRGLIKQLIQNEDRKKPLNDSQVSQILAQQGIVVARRTVAKYREFMHIPPTNLRK---    
 33 UniRef50_B2UH35        RNA polymerase, sigma 54 su...   498    1e-139  1  36.8%   2:476   3:500     -KAALEMRAKQHLALTPRLQQSVKLLQLSATEFAQEMQEALASNPFLEEVEQEAGAQPDATRANDLPGPAdtSAIETDPALATADEFPADFGTYYSHGGAHHGDGEDSDIGEWVHATPSLREHLHQELRSYRLSQRDCLLGQTVIEALDDDGYLRQLLSELIPLApePPPTEKEMQIALALVQSLDPPGVAARDLSECLRLQIEARPADTeiQEVAHDIVRSHLPRLAKREFTQMRRALGCTEDELRDACALIRMLDPRPGLRFSQAHAGYIVPDVIVAKIRGKWIAVTNPAVAPCARINKVYAELFAQTRGYH-RTPLAHQLQEARWLIRNAQQRFATIQRVAEAIVAHQKHFLEYGEVAMKPLVLRDVAEELGLHESTISRATGNKYMATPRGIFEFKYFFSRQLATDTGGACSAASVRALLKEMIEAEDADAPLSDVSLAKMLAEQGVIVARRTVAKYRGLMRIAPAEMRRQV-    
 34 UniRef50_Q03408        RNA polymerase sigma-54 fac...   496    1e-139  1  38.4%   1:477   3:493     LSHRLELRQGQGLVITPQLQQAIKLLQLSNIELDAFVEAELERNPLLQRDedHEPAVEVEAERDASLTQVDAVADTTAGRELDtdAEHAGGQIDWSRAGGGGSFESDEGYERALTDSPTLAAHLRTQLVQAALSPAHNAIAEILIDAVDEGGYLRLDIVELADRLG---CALALVEETLSVLQGFEPVGVFARDVRECLALQLKDLNRYDP----AMAAMLDHLELLAKRDMAGLRRICGVDDEDLREMIGEIRSLNPRPGAAYHSEPAETLVPDVMVREggGMWHVELNTDTLPRVLVDQRyaRVSKGARSDQEKTFVADCMASANWLVKSLDQRAKTILKVASEIVRQQDGFLAFGVEHLRPLNLKTVADAIGMHESTVSRVTSNKYIATPRGVFELKFFFTSAisSEGGEAHSAASVRHKIKGLVDAEkeADVHSDDRIVEILKAAGVDIARRTVAKYREAMRIPSSVERRRLM    
 35 UniRef50_A0LK00        RNA polymerase, sigma 54 su...   495    1e-138  1  38.1%   1:475   4:483     LELKQQLKLSQQLIMTPQLQQAIKLLQLSRLELLETIHQELETNPVLEESQEESGEAEEPGAAEAAAEVAAEvqEVEILEKVREDFDWEGYLDEYNTGTptDPNKEWQSYDQRLTVPTSLQDHLVWQIRLSDMSDEEREVAGLIIGNLNRDGYLDASLDEIAAM---GKVSTDMVERVLAVVQLLDPVGVAARDPRECLLIQARSLELEDD---LVVRIVEHYLHFLENRNYPALIRALKRPAPEVKAAVDVILSLDPRPGSRFAEESTEYISPDIYVMKVDGEFVVLLNEDGMPKLKVSSYYRHALTEDAesEAKEYIQGKLRSAAWLIKSIHQRQRTLFKVAHSIVKLQADFFEKGVSHLRPMVLRDVAEDVGMHESTISRVTASKYMHTPHGIFELKYFFNSSINSVLGEAVASESVKERIRQIIREEDLARPFSDQEIVEKLEGENISIARRTVAKYREMLGVLPSNKRKR--    
 36 UniRef50_P22881        RNA polymerase sigma-54 fac...   495    1e-138  1  37.3%   1:475   3:508     LSASLHLRQSQSLVMTPQLMQSIQLLQMTHLELGQFIAQEVEKNPLLEFQSADegFGSDRPERDETGLTAEAGGAEESVDhtELDADFANVFQdsMPGAGGSNDGEGYDLDDFVAGRKTLRETLIEQVAFAFAAPADRLIAQHLIDQLDEAGYLHAEIAETAARLG---ASAADVTRVLLVLQQFDPPGVFARTLSECLAIQLRLRNRLDP----AMEALVANLELLARRDFASLKKICGVDEEDLIEMLAEIRKLDPKPGTSFETSVTEAIIPDVVVRSadGGWLVELNPDALPRVLVNHDYFAEISRhkNSAEQAFLSECMQNANWLTRSLDQRARTILKVASEIVRQQDAFLVHGVDHLRPLNLRIVADAIKMHESTVSRVTSNKYILTPRGLFELKYFFTVSisAENGDAHSAESVRHRIRTMISQESADAVLSDDDIVDILKRAGVDIARRTVAKYREAMNIPSSVQRRR--    
 37 UniRef50_B3Q2R5        RNA polymerase sigma factor...   494    1e-138  1  38.3%   3:475   5:472     --TSLHQRQQQSLVITPQLIASIRLLQLAHTELNQFVEQEIEKNPFLDLASNDGGAspTAADDPNISAREDHVDGPARTDMPELSSPWKSIRDTGNLSPG-----ERPSLDEFAASTETLHEHVAHQIALTAFTPQERLIAGALADHLDDTGYLQVNLLELAERLNSPEAG---VKRVLEALQLFDPPGIFARSLGECLEIQLRQRDRFDP----AMAALVANLELLARRDFRALKRRCRVDEDDLLDMLNEIRALDPKPGNQFQSARSESIIPDVFVLPsgGGWHVELNREILPKVLINQTYFAQVTraQSSKDQSFLNECFQSASWLVRSLDQRATTILKVATEIVRHQDVFLEDGIAHLRPLNLKTIADAIDMHESTVSRVTSNKYILTPRGVFELKYFFTVAisSQGGDAHSAEAVRHQIRALIAAETLHDVLSDDGIVAKLKETGVDIARRTVAKYREAMNIPSSAQRRR--    
 38 UniRef50_C5V3W1        RNA polymerase, sigma 54 su...   492    1e-137  1  41.2%   1:476   1:465     MKASLQLRMSQQLTLTPQLQQSIRLLQLSTLDMQQEIDRMLDENPMLELGDESVYHALSGEPVREDHAQVDNAESERGEAEPFE-----------WNAETRGADDESDAYPEQAALQASMREYLHSQLSVSQLDSRDRLVIGMLIDALDENGYMLQDLAELAGLLPAeeLTLDDLETALVQLQYLDRPGLGARTLSECLALQLKALPEQTPGRDLAMSLVNGNLDLLAAHDFSKIKKLLRCSDASLRVAQELIVSLNPKPGCEFDRSVADYVVPDVIVEQHKGKWRARLNADAMPRLRVNQMYANILQQ-RDDKSGAPLVSQLQEASWLIKSLRQRFDTILRVAQAIVDRQGAFLEHGDIAMRPLVLREIADVLEMHESTVSRGTTQKFMRTPRGIYEFKYFFGSGLVTESGGVCSSAAIRELIKQLVGGEDTSKPLTDGRMSEILAQQGIVVARRTIAKYREALHILPVNLRKSL-    
 39 UniRef50_Q2W084        DNA-directed RNA polymerase...   490    1e-137  1  38.7%   1:475   3:497     IGPRLDIRQTQSLVMTPQLQQAIKLLQLSNFELTAFIDQELERNPLLEREEGERGPEPTEPKVDSTDLAVLDSAPAEApaEDGMDVDYDNTFNNDSASDAVQDEsgESNLEQMVAGEISLRDHLAAQVSMDIPDAGDRLIALHLIEMLDEAGYLIGDLDELAERLG---CPTERVLVVLKRVQGFDPVGVFARSLKECLGLQLAEKNRLDP----AMQALLDNLELLARRDLPGLMKACGVDAEDMAEMIGEIKALDPKPALAFDHIVAQPVTPDVLMRrqDGAWVVELNSDTLPRVLVnrYYSKIAGAARSKDDKTYISERFQSANWLVKSLHQRATTILKVATEIVRQQDAFFRLGVQHLRPLVLRDIATAISMHESTVSRVTSNKYMATPRGIYELKYFFTQAIGSADGGdhSAESVRHRIKALIDAEGKS-VLSDDSIVDALKAEGIDIARRTVAKYREAMNIGSSVQRRR--    
 40 UniRef50_A9IMC8        RNA polymerase sigma-54 fac...   488    1e-136  1  36.9%   6:476  20:489     -----ELRLHQQTALTPRLQQSVKLLQMSALEFNQEVRQALVENPFLEEDEEAAASAPQAPDGAGADAPVAQAAAATSSGAL-GDEHGPAAYSGDYPSARRANDGAPMDMGLWVGASVSLQERLDQELRTYRLSPRDRLLAQYIVQALDEDGYLRQPLLELAegVFGTPPDESEWRAALRLVQQLDAPGLAARDLQECLALQLQALDGQRPEVALARRIVDQHLDILARHDYEALQNALGCDESSLRQACDTVRSLDPRPGRRYDEAPPAYIVPDVIVRKESGQWRVYCNRGAVPQPRLHRVYADLFRTTRYR-DRGPMAQELQEARWLVRNVEQRYSTIQRVAEAIVRLQHMFFEYGPVALRPLMLREVSAELDIHESTVSRATANKYMATPMGILEFKYFFSRELATDTGGSCSAGAVRALIAELIDNEDPRMPLSDVALASKLAADGIVVARRTVSKYRAQIKRPPADLRRQY-    
 41 UniRef50_A9HW09        RNA polymerase sigma-54 fac...   488    1e-136  1  42.1%   2:474   9:474     -RPALELRTGQHLTLTPQLQQSIRLLQLSTLDLQAEISQALADNPMLERNDERSEAEVDAPTERedIDAEPAREAETRIDEMP---------------GAGGVYPDDRPDGPDTARSDTLREHLLAQLGLTRAGRRDAALVSLLIDELDENGYLASPLEEILEWLPPeeADLDELRAALCLLQSFDPPGIGARDMAECLVLQLRNPDpdPTVLACARRLCADHLPLLAGGNAARLRDALQCDDATARAAHALIRRLDPRPGRAWTVPAADYAVPDVIVRKTRQGWQAVLNSAAVPRLQVNTLYAQLLGNQR-EASHAGLHAQLQQARWMIRNVEQRFDTILRVAQAIVAHQSAFFSEGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLELKHFFGSGVATDAGDVASATAVQAVIRQMVAGEDRAKPLSDNQITQRLADQGIVIARRTVAKYREALRIAPASLRK---    
 42 UniRef50_Q0BUA8        RNA polymerase sigma-54 fac...   487    1e-136  1  37.7%   1:475  23:531     IGPRLDLRQSQSLVMTPQLRQAIKLLQFNNMEVAAFIEEELERNPLLERDESTELIQERPAPDQTGPeaDAASSDHMISEAGPLDVDPGSLYDEPGETAssFDNSPFDVISQRLEYRPSLREQLAEQLRLCFASPQDRLIGAHLIAQLDAAGRLTMPPAAIAKALN---CPLPHLENIRTAMRYFDPPGLFCLDLKECLTTQLQAFNRYDP----AMAILLEHLDLLAQRNHRRLMSLCGVDAEDLAGMIDDIKRCNPKPGAGFDSDLPQTIIPDVLMSRRpgEWLIELNPETMPRVLVNMglTRFARRSMSRDDRSFIKEKLNTAHWLVKSLQQRSQTILRVSAEIVRQQQAFFRHGVSHLKPLILRDIAEAVDMHESTISRVTANKYIATPRGTLELKYFFTTAISGADGENFSAEAIRHRIRTLIDQEPASDVLSDDALVTHLKQEGIDIARRTVAKYREALRIPSSVQRKR--    
 43 UniRef50_C9R8T3        RNA polymerase, sigma 54 su...   487    1e-136  1  35.9%   2:474   4:451     -KADIRLETAQKLAFRPELQQAVAVLQFSTQELWQYVQQQLTEN--------------------PLLELKEEGEGGEPPEEEASEDSWVDYLCDASDLGLSQQEPASSPEPVPVAPGPSLYEHLLQQLAFLPLNSTERAVAEFLAGNLDQDGYLRLPLAEAASLLG---ISEEAVARGLKVLQSLEPPGVGARDLRECLLLQLERSHPED---HLARKLVGEHLEELAEGEWAKLVRKLGVSQEELDRAVERIRQLNPRPGSNFGSNWVEYVVPDIVVQEVEGDYEVLLNESVYPRLVINSTYRDLLRHPqgPEAKTFLQQRLKQALWLIKNLEQRRLTLYRVAVALVEKQRSFFDQGLSGLKPLTLREIAEEIGVHESTVSRAIANKYLQCSRGIFPLRFFFASGVSSSRGQEVAAQAVKWLIKQLIDKEDPAAPLSDQAIARELKRQGIELSRRTVAKYRMEMGIPNAAKRK---    
 44 UniRef50_A3EWH7        RNA polymerase, sigma 54 su...   486    1e-136  1  34.1%   1:475   2:482     IRQRLEIKLGQKMVMTPQLQQAIHLLMLAKLDLREEILQETQTNPLLELEEEGDWEDSVPESSIDHLPADSENRETVPEEETNPdeDMDDSGLYQEERSIREDPESDFSYEKVLAAPTTLEDHLIWQISFREMSPVEKELAHFLIGNINEDGYLAVSEEEIPESL---RTDPEMFPRVLSWIQECDPPGVGARNLRECLMIQARMLHLEKT---VVWSVLESQLDEFMEMKYKGIARALSVSVEDIQEAGKIIRKLEPKPGRPYFRDMAMPISPDVRFYDAggEIRVGLNEEGVPRLRIQSAYKSLLKteKKDKTREYIEEKLRSAMWFMKSIEQRKKTILRVAEAILRHQEDFFRRGPLGLKPLVLKTIAQDLGLHESTISRVTNQKYAETPFGIVELKFFFSGGLPSQSGSEHSSVSVREKIRDMVHGESKSAPLTDQEIMNRLGKEGIVIARRTVAKYRMELDIPPVNKRKQ--    
 45 UniRef50_Q6FED3        RNA polymerase sigma-54 fac...   486    1e-136  1  47.2%   1:477   1:482     MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKIEDEGTAEstHLENKESRDLTQDLNADHLPNDLPVDTDWDDVYTHQSTALASPEYEERED---NRQAEHTLKEHILAQVNLLHFSTVDRLIAYCVVDCLDEKGFLDAEIEelSEAGLEEEIEADEVMVVLKHIQRLDPVGVGSKNLAECLKVQLDVLDVFTPLRNEALSLL-KYYELLVSNDLNKLLKSTNLTMLQVKEAIELLKTLKPYPGLDFEAQDSDYQVPDVVVTKKDQSWQVQLNPDIMPKLRINSFYSNMIRRADQSDGNMYLRNQMLEAKNFIKSIDERHKTLLKVATCIVEHQRNFFEIGPEGMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRGLFELKYFFSSHVGTTSGGECSSTAIRARIKKMISAENPRKPLSDNIIANMLKDEGIDVARRTVAKYRESLHIPSSSERKVLI    
 46 UniRef50_UPI0001C42E0E RNA polymerase sigma factor...   486    1e-136  1  32.8%   1:476   1:445     MQFGLFQQQTTTLIMTQQLRQAINLLQYSTTDLSAFIHEQALENPLIDLQDQASMQAGSESSYIGA--------------------------PAPRSGSTRKSEDEASPIDYALVDHKSLSEHLVSQAGEIALSEELERQLHYFIFSLREDGYFCRPFEEVCSDLA---ISTEEGEDVLRILQSFEPAGVGARSLSECLLLQLKHLSNKAP---LAEIIVSRHMEDLASKKWKTLATELDVTMSDIQDVYDLIQTLDPRPGTQYSGEPTNYLIPDLSITWKNGELVVQLIDDSLPPIRLNRDYEQLLHRSNHAEATEYAKQKYQQIQWLLKSIEQRQQTIKKVAEAIVRHQRDFFESKSGVLKPLTLKDIAEEIDMHESTVSRATTHKYAQTPRGLYELKAFFTSSVKNGFGESTSSQSIKELIKELIAGESKQKPLSDQKIVTWLeeKGITVSRRAIAKYRDELGIPSSSKRKRY-    
 47 UniRef50_B9XGP4        RNA polymerase, sigma 54 su...   486    1e-135  1  34.5%   1:476   1:498     MAQGLQlrLTQSLVLSPQMQQSLALLQAPTLELKALVETELQQNPVLEEvdQSERAKTDDGEQVEAVDPTEPPADveFEKLSQLDQEWRDHysTNAPTRQSADEEEKRQffDSLVAGTSLQEVLLEQVRESGLPEDLRPIGEMLIGNIDDYGYLKANIDELSFSTNIPAV---KIEEVLKVIQTFDPPGVGARDLRECLLLQLERAGDQESIE---YKIIRDYMDALGKRRIPEIARGLGLEVDEVQEAIASIGRLEPRPGRAFLADNHQYILPEVFVNKVGDDFVVTTNNEQIPHLRISNTYKDLMAQSGNseVINYIREKIRAGKFLIKSLHQRQQTILNIAIEIVKRQREFMEKGVSLLKPMTMVQVAEAVGVHETTVSRAVSSKYMQTPQGIFEMKYFFTAGIQTASGEGLSNTSVKDMIAEMFKKEDTTKPLSDQEIVKMLQEKGIVIARRTVAKYRSELNILPSNLRKVY-    
 48 UniRef50_P33984        RNA polymerase sigma-54 fac...   484    1e-135  1  37.9%   1:475   3:501     MSPKMEFRQSQSLVMTPQLMQAIKLLQLSNLELVAYVEAELERNPLLERASEPESPEHDPPNPQEEAPTPPDSGAPVSGdeTRLDTDLGNVFPDDAPAErgGDRGEDYNPEAFLAAETTLADHLEAQLSVAEPDPARRLIGLNLIGLIDETGYFSGDLDAVAEQLG---ATHDQVADVLRVIQSFEPSGVGARSLSECLALQLRDKDRCDP----AMQALLDNLELLARHDRNALKRICGVDAEDLADMIGEIRRLDPKPGLAYGGGVVHPLVPDVFVResDGSWIVELNSETLPRVLVNQTyaTVAKAARSAEEKTFLADCLQSASWLTRSLDQRARTILKVASEIVRQQDAFLVHGVRHLRPLNLRTVADAIGMHESTVSRVTSNKYISTPRGVLEMkfFSSSIASSGGGEAHAAEAVRHRIKSLIEAESADDVLSDDTLVQKLKDDGIDIARRTVAKYRESMNIPSSVQRRR--    
 49 UniRef50_Q31GC3        Sigma-54 (RpoN) n=2 Tax=Bac...   484    1e-135  1  42.4%   1:476   3:496     LMPGLQINIGQQLKLTPQLQQSIKILQYSALEVQQTISTTLETNFMLELDEdsEYEEEPLNESSETETELDIEASDTLSDDLQADYEWEEVYIDssNSIKSNNNDDYTAPENYTSAEVTLSEKLYWQADIYSWPDSQDVIASYIIDDIDDEGYLKTPLEDIMASLQKNevSLADIEQVLSVIQQFEPTGVGARDLSEGLILQLKALP-QNPYVVTAIKIIEENFDLLSVRDYKRIKKIYLLNDEELMEVIHVIQALSPRPGREYSSTQGEIVIPDLKLYRSKDGFIVELNQDAFPRLTINSAYIDMAGSLgdSSDSKQIKEQLIEAKGLIKSIQSRGETLLRVGKYIIEKQARFFEEGEQAMQPMVLRDVAEALELHESTISRATNQKYMQTPRGTFELKYFFSTGVSQYGSDDQSAIAIKSHIKQLIEGEDPNKPLSDNKLMALLEEKEINVARRTIAKYREALHIPSSSERKKL-    
 50 UniRef50_B2A6Z6        RNA polymerase, sigma 54 su...   484    1e-135  1  30.5%   1:476   3:479     LGFDLNLEQKQQLVITPELRKAIKLLQLSSIELDNYIEKELVENPMLEISSTEESESGDDNGKEDSVEKLENSQESAQSED-RFDIDWQKYFEDSsnLPKENYDEGKDGFETFTPSTISLTEHLYFQLSlsDQEEHIKPLAEFLIGNLDANGYLNGTLQEIAEFL---DVEEKELEKALELVQSLDPPGVGARSLKECLLLQVET---DSHSPDSAYELIENFLSEIAENRLDKIAKELKLPIKEVQEIVDYIRSLTPKPASPFSEEgpSYITPDIVIKRVEDEYEIILNDSMSPRLKINSKYRQLLKTEKGSGVAKFLNSRLDSAMWLIKSIEQRRITLYNIMQKLVEMQRPFLDNGVRYLKPLTLKEVADEIDVHESTVSRATANKYVQTPQGVYPLRFFFSSKLDNNQDDYNSSTSIKQKIKELVEEEDKKKPLSDQKIAEILQESSINISRRTVAKYRKELNLPSSSKRKRY-    
 51 UniRef50_UPI00016A2E41 RNA polymerase factor sigma...   483    1e-135  1  36.8%   1:475   1:476     MSVTLALQMRQHLALTPRLQQSLRLLQMSSLEFQQELRLALDRNPFLEDVRTDDDDGAAEPSSAAEAADASTPETGALDGAHPPANEIAYTAEPAARGPGRADDDASDAagEWSAAEPSLHAYLHDALRLYPLNRRDRAAARLIIDALDDDGYLRQALPELVLAapALLLNERDLAVALRLVQALDRPGIAARTLAECLLLQLDALPAGTPALAQAKAIARDHLERLAHRETAELQRRLGCDAPTLHAACALVRGLDPRPGDHYGSTRGDYVVPDVIVREVRGEWIVTINPAVLPRARLHQRYAELFARASGERDSP-LGQQLQEARWLIRNAQKRFDTIQRVGACIVARQRDFFRYGEIALKPLVLRDIADELDLHESTVSRATGNKYMATPYGTFEFKHFFPRRLEAAGNGACSAAAAKVLIRDMIAAEQHAEPLSDVALAQRLAGRGILLARRTVTKYRQAMKIPPAGLRRR--    
 52 UniRef50_D0STY4        RNA polymerase sigma-54 fac...   483    1e-135  1  47.0%   1:477   1:483     MRLSVGIKIANSLSLTPQLQQAIRLLQLSSLELEQEVQLQLDSNPLLEKVEEQieSLSTIESNNENHDLTNELNADHLPDDLPVDTDWDDVYTHQPTSLGAAEFEERED---NRQGHQSLQEYMLEQINLLNFSQVDKLIAYCIVDSLDDKGFLDAELSEITASvsEEEIEDDEVAVVLKHIQRLDPVGVGSRSLAECLLVQLDNLPTSTSCRNDAIKLLQ-HYELLITNELPKLIKQTGLNPEQLRCAVDLLKTLKPHPGLEFENKESDYQVPDVVVMKKNNCWQVNLNSDVLPKLRVNSFYAKMIRRADQSDDNQYLRNQMLEAKNFIKSIDERHKTLLKVATCIVEHQKMFLEIGAEGMKPLVLRDIAEEVELHESTVSRVTTNKYMLTPRGLFELKYFFSSHVGTTSGGEASSTAIRAKIKKLISEENARKPLSDNAIANMLKDEGIDVARRTVAKYRESLHIPSSSERKVLI    
 53 UniRef50_C1A8U9        RNA polymerase sigma factor...   480    1e-134  1  32.6%   1:476   1:497     MRTGLQQtlRQELKVNPRLYQAMDLLYMPLLDLQQHLKQELLTNPFLELVEPEDEEEDSSdpEPQDMAEPEAPAEPEPEKSGDDEVDWEAVLLDGFETGGQREEHEQQEWHEPVtaGRDLADHLTEQLSLLALSPRQAFMAEEFVGNINDDGYLACTLEEIRDGANqpEFSEEEIEALLLIIQELDPPGVGARNLRECLLLQLRADGQADS---LAGRLVAEAFEELIARRWGEVAKRFGISPQAVQAAADEIAKLDPKPGLRFSAGSDNYIIPDLVVEKIDGYYHIFLNDGNLPRLKISRIYTDIARDKkdTESKDFIATKLNSANWMIQAIEQRRQTMLKVMHYIVDRQREFFERGVQGLRPLTLREVAEAVGMHESTVSRVTNEKFVQTPRGVLPLKFFFSSGLSTSDGDDVSARGIKDQIEKLVSGEDPRNPLTDQAIVEILQETGVQIARRTVAKYRDQLGVLPARMRKRV-    
 54 UniRef50_Q1Q3A8        Strongly similar to RNA pol...   480    1e-134  1  29.4%   1:476   3:485     MQSSLLPQLQQKMKLSPQIIQSIEILQLPLLALAERIQQELLDNPVLEEVVEQPKEDSPVSEDSSIAGEndDAKKAEVDRHNEMAEDWNEYYSKTTIRKSALSDERDQKQenTATKPMSLHDYLLGQLSLMEVPEHLYEACENIIYSVDTSGYLSGSLEEIVSSF-EKPVSLADAEKALEIVQTLEPPGIGARNLQECLLLQL---DNRDPNYHITKDLLQNYLLEIESRKYPAIAKKTGYSLETIKKQVEFIRTLNPKPGSVFNDETIPYVVPEVKVEQIDGEYEVFLIdaNIPHLHISSFYRKSLSESndSSTRQYIQKKIESAKWLVDAIEQRRSTLYKVACKIVSMQKGFLDEGVHRLRTLKMQDVADIVGVHVSTVSRAIAHKYIQTPQGVFEMKFFFTGGFQNADGNMESWESIRQKLIEIVAKEDKSNPLSDEEVADKLGASGVDIARRTVTKYRRILKIPSSRQRKAY-    
 55 UniRef50_A1K6F2        RNA polymerase sigma-54 fac...   477    1e-133  1  40.1%   1:474   1:475     MSLGMELRLRQHLAITPQIQQALRLLQLSSQEFTQEVEQAVTSNPFLEEDPDAPPPGPAAAMPLAPAASSSEpeTVDGGDGEGSDAPVSPALHEIGRSGGGGGGDEEHDWTEWTEAPISLRDNLRNQLLLSPMSDRDRTLAHMVIDELTDAGYLETPLEELADLipEEEVDVHELSAALKLVQQLDPPGIAARSLQECLLLQLQALPASTPNLSLALELVGQHFELLARREFTRLQQLLSCNENALHGARALIRTLDPRPGRCFAPDNTRYVVPDIIVTNQRGRWVATLNPAVQPQVRINRAYAEIAASRSGCGAS--FSRLLQEARWLLRNVEQRFNTIQRVADAIVARQRVFFSYGEAAMKPMALKDIATELGLHESTVCRVTNGKYMATPRGLFEFKYFFSRQLATDDGGSCSATAIRALLKELIAAEDPQTPLSDAQLARMLAEQGLRLARRTVTKYRTLMRVPSVELRR---    
 56 UniRef50_D0MG37        RNA polymerase, sigma 54 su...   475    1e-132  1  35.2%   3:477   2:509     --LKLKQEQKLQQKLSPQQIQYIKLLQLPTLALEQRIKAELESNpaLDETPETAEAEATSETTETEAETVEEEASTEIEEEIDWEELFNNVDDLYGYKArdRTDEDEERRELPLPARPSMIEHLREQLVLLDLNETERLIAEQIIGSIDEDGYLRRPLESIVDDLMFThvTEEDVERVLKQIQRLDPVGIAARDLRECLIVQLEAMPEDTPGREVALRMLREAFKDFAMKHFEALQRKLGVSEAELKEAYDLIQHLNPKPGEGGDVAPQqyIVPDFTVTYQDGEFIITLNSRNAPQLRISRRYRQMLEQMadEQTRAFLKNKLESARWFINSINQRRQTMLKVMKAIVELQEDFFKYGEGHLKPMILKDVADRIGMDISTVSRVVNGKYVQTDFGVYPLKYFFSEGLATESGEEVSNREVKALIQRMIEQEDKRNPLSDQKIAELLAKQGFKIARRTVTKYREQLGIPVARLRREIV    
 57 UniRef50_A6CFS8        RNA polymerase subunit sigm...   475    1e-132  1  31.3%   1:476   3:496     LNISQQMKLGQQMKLAPRMIQSMEILQLPLQALEERIDQELAENVCLERISDNENTPETESeeKEMVAGSEQNNESDFERLLEMAEQWPEDNVTSATKPSSNRVSEddAVANITERQQTINEYLIEQFHYFSCSPEVKEFGEYLIQNLDHNGRLQSSLPEIVQVYGQ-KITQEEAETALSLIQKCDPPGVGARDLQECLLLQLK---PDAPYRDVLVTLITAHLDDLGQNRLPVIQRKTGYSIDMIKNAMSYLRYLDPFPGRGFESEPVLKVTPDVFVKLddGKYVVELENEYTPPLRISRGYAQMLRNKADDQTKEYIKKKIDAAKWLIEAIEQRHSTLKRVAQAIVDFQTEFLDNGPEFIVPLKMQQIADVVGVHVTTVSRAVDDKWIQTPRGLYPLKRFFGGGTKTSDGEDVAWGIIRLKLKEIIDGEDKNKPLSDDALVDALSKEGYNLARRTVTKYRKAMNIPSSRQRREY-    
 58 UniRef50_D2L2L2        RNA polymerase, sigma 54 su...   475    1e-132  1  37.7%   1:477   3:478     LELRQQLKLSQQLVMTPQLQQAIKLLQLSRLELLESVQQELLE-NPLLEESIEEDRQPERTMAEDNLGPTGNSSDAAMEKELLKNAEWDDYLGDFASTGRQSQSRESEMPEerLASKPSLEGHLGWQMRLSNFTAKELEIGESIVGSLNSSGYLRASLEELAQMAG---ASVPEVETVLHRLQRFDPVGVAARTPSECLLTQIEVYGYEDTIL---IELVRDHLEDLEKKRYKPLAKKFHITMEKLKEYLELIQTLNPMPGASYGSGDPIFVSPDAFVYKYGGEFVIILNEEGMPRLNVNTTYMAEI-NPKNDKDKDYLQDKMRSAMWLMKSLYQRQRTLYKVLESIVKFQREFFEEGVTRLRPLILKDVADDISMHESTVSRITSNKYVATPHGIFELKFFFNSSLDLDDGGTVGSESVKAMIKRIISGENAKKPISDEAIADMLKDeqINIARRTVAKYRTAMGIESSSKRKEIF    
 59 UniRef50_C0Z6M1        RNA polymerase sigma-54 fac...   473    1e-132  1  35.9%   1:476   1:455     MGLGLFQEQTLKLVMTPELRQAITILQYSAIDLISYLQDQANENPVFDLEVAGEVASAKAEKPAPEIDWKEIVGNRATGE-----------------YGSSKNESTYNPLDYVQQGAETLYEHLERQLGYVkfSSLQKQIALFLIGNLDEKGYLEITLEEASERLGAEML---EIEDVLSVLQHFDPVGVASRSLEECLLLQLEHLALDD---EKIVQVVRNHLQDLADNRYQRIADKIGCTPQEVQTIADLIRTLNPRPGAAFSSVETRYVIPDVTVEKVGNDYVVLVNDVAAPRLKINSFYEKMLSQQKsdEAKQFIHDKLNAAMWLAKSLEQRRLTLMRVTQAILDMQREFFDRGIHYLKPMTQKEIAERVGLHESTISRATSNKYVQTPRGIFELKYFFTSALSTSSGEATSSESVKRRIKALIEQEDRKAPLSDQKLGEMLLTEGIEISRRTVAKYREEMLIPSSAKRKRF-    
 60 UniRef50_B6FY84        Putative uncharacterized pr...   471    1e-131  1  32.2%   2:476   4:451     -KNTLELNQSQKLILTTQLKQSLAILNMSRLEVEEEIRKESESNPLLEAEKNEEGIDW-----EKYIKHMESINIRQDKNDAP------------------YSSENAVDFENMIRSTSNLYDYLIDELKYFKLTFEEKRICKYIIDSLDEDGYLRINDKEIYDAL---RVDASLFRRCLDIVQQLDPPGIGARNISECLILQLERMGISN---NIVENIIMNDLELIGRNKLKDIAKKYKISIEKCKEAIEIIRHLDPKPGRACSNDKCVYVQPDVIVDKIDGKYIVHTNEKDVYNIKINDFYRNMMTDKddKEAKEFIKDRLNSAATLIKNIESRKSTILRIAEAIIDEQQEFIQKGEKYIKPMKMKDIADKLEIHESTVSRGVNGKYMLTPFGLYEFKFFFNAALETdsSDGASSAGIKRDIKDIIDGENKKKPLSDDAISKMLKEKGVSVARRTVAKYREELGIPSSSRRKEF-    
 61 UniRef50_A9GI22        RNA polymerase sigma-54 fac...   471    1e-131  1  36.1%   1:477   3:506     MEMKLQFKLSQQLVMTPQLVQAIRLLQLSRLELVDEIRKELDGNPVLADDMTDPKARDGDKGDQRGRNADLPTEQreNGERFDRDTdwEQFLENraMPAHRGGFEELPPIDQNLTKPSNLRDHLLWQLQMSDFVENERQFALLVIGNLDEKGYLDlpDLSLVDLAREAELHPEDAEEVLSMIQRFDPVGVAARDLSECLRVQAEVLGFDD----IEMAIIKDHLHNVERRNFPAIAKALKIPLEDVYDAVQEIQKLESVPARNFAeeKTIAITPDVYVIKDGTQFVVTDNDKGLQRLYINENLAQRM--LRDPKAKEFISEKLRSAQWLIRAIEQRRRTIIKVTECIVEKQREFLERGVGYLKPMILRDVAESVGMHESTISRVTSNKYVHTPQGLFELKYFFNSSIHRVADEDIASESVKQAIKKIIVAEDKSNPYSDQAIVKILEedGIKIARRTVAKYREMLGILSSSKRKKMF    
 62 UniRef50_Q3SF03        RNA polymease sigma-54 fact...   470    1e-131  1  34.2%   2:474   3:473     -RPALALEPRQTQTLTPRLQQAVRLLQLSTFDFALELQELVSSNPFLELEDGEFADEDAAAPDTATTAADTPPAADGAQAEDYAETAYEERLGDGGEAPGRYSEANADAID-FACAPVTLRQHVHSQLNMLDLPPREHFLAWIIAEALDDDGYLRVELDALRAMAGLEpvDAREMLAALTRVQSLDPAGLAARDVPECLTLQLRRRPP-SPQRELALRIVRDELKLLQQRDLQRIAQRVGSTPAEVEAVCAYIRRLEPRPGACFGHHVAAAIRPDVIVRKIRGQWTALLNSSAVPRVSLNRTYAELFQRHREPHHGD-LAGHLREARWAVQNMEQRFSTILRVAQALVDRQQHFFEHGTLAMQPLGLKDIADELGLHESTVSRATCNKFMVTPLGVFELKYFFSRALNTEQGSQCSTTAIREAIRKMILSEDARSPHSDADIARILMQQGLRVARRTVTKYRQMMAIPNVDMRR---    
 63 UniRef50_C4XU56        RNA polymerase sigma factor...   469    1e-131  1  37.7%   1:477   3:476     LELRQQLKLSQQLVMTPQLQQAIKLLQLSRLELLESVQQELLE---NPLLEESVEEDRQPERVMVEDNNGPTGADAAMEKELLKNAEWDDYLGDFASTSKQSLSRDLEVPEerLASKPSLDGHLGWQMHLSNFTAKEVEIGETIVGSLNSSGYLRATVEEIA---GMANADPAHVEKVLHRLQRFDPVGVAARTPSECLLIQIEVYGYDDPIL---IELVREHLEDLEKKRYKPLAKKFHLTMEKLKEYLELIQTLDPMPGASYGSGDPIYVSPDAFVYKYGEDFVILLNEEGMPRLGLNMSYTD-GSLPRNDKDKDYLQDKMRSAMWLMKSLYQRQRTLYKVLESIVKFQRGFFEDGVTKLRPLILKDVADDISMHESTVSRITSNKYVATPHGIFELKFFFNSALELDDGGTVGSESVKAMIKRIISGENDKKPISDEAIADMLKDeqINIARRTVAKYRTAMGIESSSKRKAVF    
 64 UniRef50_A6G445        Sigma-54 (RpoN) n=1 Tax=Ple...   469    1e-130  1  35.4%   1:477   3:518     LHMRQELRMSQQLVMTPQLQQAIKLLQLSRVELQDLVRNELleEPVSAVEMQDGVDLQGDIGEARAADAPQQEVKADAPN--TDNFDWESYLQHHTLSggVRGDDDLPGLEQTMADEETLVEHLMWQIRLSNWSPLEEDIAEYIVRSITASGHLGLSVPQIAQRL---EVSTLRVEQMLRKVQQLDPLALASRNLAEVLWIQARH-PEHPIGDPLVLTIIAKHLPNLEKRAYQAVARDTGEPLEEVYEATKVIMGLEPRPARQFVSESAQYVTPDVYVHKIGEEYVVTLNDDGLPKLKISNYYRSAmaKGDQAGAKDYITERLRSAQWLIRSIQQRQRTILKVTKSILGFQREFFEKGPQHLRPLILKDVAEDIEMHESTVSRVTTNKYVHTPQGIYELKYFFNAGISRRGGGELASEAVKEKIKKLIEGEDSRKPYSDQKLVELLREEGIDIARRTVAKYREQLNLLSSSKRRKLF    
 65 UniRef50_C1P7Z1        RNA polymerase, sigma 54 su...   469    1e-130  1  30.3%   1:476   3:443     LQVGLWQKQSMKLAMTQELKQAIEVLQFSSQELASFLEEKAAENPLIELSSANIKLV-------------------------------DSRFSGLSRVKGQKKSQDKNWIEQIPAQTETLPDFLISQLDMKALSNKILKAVQLYARHLDANGYLAISVQEAAKMAA---ISEEDAEKALGILQSLDPAGIGARSLQECLLIQIKR---DPDAPGHAEELISRHFLDFAEKKWRGIAKKLDISLQEIQRVSDYVQTLNPRPGSGFMADRPQYIVPDLLVKNHAGKLELYLVENQVPKLRLNESYASM-NPAGDAGVTRYLKEKTQEYYWIRKSIESRKKTLLKVGAALLEKQRDFFLYGKGHLKPLTMKEISDDIGMHESTVSRAVREKYMETPFGTFPLKTFFTTAlsAGGEEAASSAEVKNEISALISGEDKRKPLSDQAIVTVLNEKGFEISRRTVAKYREQLGIPSSSKRKRY-    
 66 UniRef50_D2LIV1        RNA polymerase, sigma 54 su...   467    1e-130  1  38.0%   1:476   2:497     LQLRLEQRQTQKIVITPQLRQAIKLLQFSAIELQSYIENEIRDNPLLEAEERADGDApgADADVPAFDARDASPAVETVTDWEPATPGDRAYEGasTNGKAGSPSDDYDPFATLSMAESLTDHLNEQAQLAFPDAQDRFIARYLIDLVDADGYIRSPLEDAAALLSSP---LEDIERVLGVMQTFDPVGVCARDLAECLAIQLREKDRCDPYMER----LLANLDLIAACDMQKLRRVCGVDADDLREMMQELRALNPKPGAAFEHGEVETLVPDVIVRRgdGEWRAELNPSAAPSLAVDryYASLKNRCRSDSERTYLADRQSSANWLVKSLEQRLSTILKVATAMVEEQSAFFDHGVRHLKPLNLRQIAAKIGMHESTVSRVTSNKAIQTPRGIFEMKYFFtiPSASASSEAHSSEAVRDRIKEFILNESPEEVLSDDRIVTMLKADGIDIARRTVAKYRDALRIPSSAARRRL-    
 67 UniRef50_A5G033        RNA polymerase, sigma 54 su...   466    1e-130  1  35.4%   1:475   3:482     IGPRLDLRHTQSLVMTPQLRQAIQLLQFTNAEVSQFIEDELLKNPLLERVEPEADAALPVPRNDadIGAEHVVDPDPSGASTPLDVDFSNVYDAGGVGDGTgsPERDDWIGQIADRPPGLRESLDQQARLAFADPVRRRIAFALIMALDPAGRLADPPEQIAERLA---VAPDMLEAVRQTMMRFDPTGMFARDLAECLAVQLDERNRLDP----AMRALLANLELLARRDLRSLMEICGVDAEDLRDMIAEIRRLNPKPGAIFDVTPMTPLIPDVLMRPgdGDYFLELNPETMPRVLIRRGFHAQIVARASRETRQFLSERVQSANWLVRALESRAETILRVAGEIVRHQDAFFRHGIGFLRPLTLREIAAALEIHESTVSRVTSNKVIATPRGIFEMKFFFTTALAGANGESHSAEAVRHRISTLIEGEAANRILSDDALARLLQKEGIDIARRTVAKYREALRIPGSAQRKR--    
 68 UniRef50_A6NQ00        Putative uncharacterized pr...   466    1e-129  1  29.3%   3:476   1:455     --MELSMNLRQTQTLSPQMVQSMEILQMGSQELLEFIEETTQANPVLEVDEKYDRQDEFDLMRR----------KLEWLESTDVQNSW------YHRQDAEEDADPMANYGGVENGEEDLYRYVLSQLGMLSLERDVMAAAVFVVESLNQNGWLDDDVPALAAAFG---CGQSVMERALEAVQSLEPAGVAARNLSECLRLQLLRRGEGN---ALALEIVEHHLDALARSRFGLIAKELGASAEEVREACALIKTLNPKPGTGFarEHLTYINPDIIVVSFPDHFEVLANDYFFPSLHMSGYYQQLMKDTDDQEVKDYLTDKVRQAKWVVRSIEQRRSTLLSCAQCILALQEPFFRQGPGHLSPMSLADVAQRLEVHESTVSRAIRDKYLQCSMGVYPLSYFFSRGlsGDGEEGASPEAAKILLRKLIEEEDKAHPHSDQKLRELMGEQGCTISRRTVAKYRDELGIPSTTGRRQY-    
 69 UniRef50_A8W0U1        SUF system FeS assembly pro...   465    1e-129  1  31.9%   1:477   1:444     MDYGMYQQQSMKLVMTTELRQAITILQFSAQDLTDYLHEQQLENPLIEISDPPMTEEARRRTAEVDMPEP------------------------GRMPSGKSGDSDVTALDFLREPEEGLRDHLLHQIRMSEAPEAIRHIMNYLALSLDENGYLEHEIDVYAGELGEEPGD---VAKALGELQQLDPPGVGARNLTECLLIQLNGHEARDP---LAEAIVRDHLDQLANKQFQKIAKALDVGVEDVEVVSDFLKTLNPKPGAVFHSTPAEYITPDVHVIKTGNELVVKLADGHLPRMTMNREYEQLL-QSGGSEVASYMKQKQEQFHWIKRSIQQRQETILNVTKAIVRHQEDFFLRGADYLKPLNLKTIAEEIEVHESTVSRATVKKYAQTPKGLFELKYFFRSGFTGEGDD--SADKVKLYLKRLIDEEEKKKPYSDQKIADLLEVKGIQVSRRTVAKYREELSIPSSSKRKRYT    
 70 UniRef50_C1SGY5        RNA polymerase, sigma 54 su...   464    1e-129  1  30.9%   1:475   6:473     LNLEISGKLSQKLHITPQMKQSLAILQMPLTELLQELNTCLAENPVLEEIEQEPDEEKTEKKEEKEEKDAKDDVQNEDLEKI----DWEELYRDSGEVSYTPSDDEGYDLEKFVSGQENLYGHLMYQLKVTGSSQDILTAGQYIIGSLTDEGYFDLEFSEVAEETG---VDEDTVAKALELIQTFDPAGIGARNLRECIAIQLCQFEVEQVYIDFIAELLENHEKDLIAYRYDEIKNSLSIEDDTFDHMLFLIRKTDPKPGMNYAKDSNHSVTPDVYIVKKDDGYDIILNEDGMPALRMNSYYLSLLRNKedGDTKEYIEEKIKNAIWLIKSLNKRQKAIYKVVKVLTEVQADFLEMGVDFLKPLKLKDIADETGLHESTVSRVTSGKYAMTEQGLFELKSFFVKGLDTDDG-DMSTQKVKSMIRSIVDSEDADKPYSDQKIVELLNGDGIKIARRTVAKYRDELNIPTKSQRKR--    
 71 UniRef50_A9BWZ4        RNA polymerase, sigma 54 su...   464    1e-129  1  33.5%   2:475   3:518     -SMHLRADIRQSQTLSPRLQLAVRMLQMSSLDFAAVVRSKLEDNPFLEDPQDAQYGeaPEAGLAPDTGMDdpDPADHLPGPATEPADDRDLWLADMHTGARQGVDGEGTAMDLAACETTLAMHLHGQLNVMAMTPRDLCMARAIVESLDDDGYLRTDLQELAGLLALSPadAQEMLIALRLVQSLDPAGVAARSVGECLLLQCPQIG-DARLRQLAQAMVQDHMDALAARDVPRLARALQVPPAQITQALDCIRRLNPRPGWNFGSSHVDYIVPDVIVRRGQNGWNVHLNPAVVPRVRLNRVYEQLFQRHRRSGQNQ-LADHLQDARWTVRNVEQRFSTILDVAQAIVRKQQLFLEFGAMAMKPLVLREIAEEVGVHESTVSRVTNNKYMATPTGVFELKHFFSRPMLSASGNACSATAIRELIGDIIAAESDARPLSDVEIARQLSAQGLVVARRTVTKYRQLLRIEPADRRRR--    
 72 UniRef50_C6HU23        RNA polymerase, sigma 54 su...   461    1e-128  1  34.3%   1:475   1:485     MKPQLDLRLTQKMVMTPQLQQAINLLMLNRLDLAQEMQEAVLENPVLEIVEGEDEGDWTPGDEGEAPAQteDPEAGEDDRMVDPLSNWDYSVDESLDNEAFQREEreFSYEKVLSQPTTLADHLEWQLSFTDLSPEEREAASYLVGNIDEDGYLALEGEGLPSDL-FPGCDMDRI---LRTIQTLDPPGVGARTLKECLQIQARLLGQEEALPG---RILDRAFDEFLAMDVKAMARKTRATPEEVGTALGFLRALEPKPGRPYYRESPSIVVPDLRFYEDdgEMRVAISEQGLPRLRIQPSYRAMLREakKDELRDYLEEKMRAAQWFLKSIEQRKKTILRVGESLLVHQADFFREGPRGLRPLVLRTIAQELGLHESTISRVTNQKYAETPFGIVELKSFFSGGVPSVGGGSHSATSVRERIRLMVRSESPESPLTDQEIMKKLEEAGIVIARRTIAKYRAELDIPPVSQRKR--    
 73 UniRef50_B0TGK6        RNA polymerase sigma-54 fac...   459    1e-128  1  34.4%   3:476   5:432     --LGQQIEQSQRLVMTPELRQALAILQMNTLELSLFIGRELVQNPLLESPDPPREREMAERRESPFGREIQ-------------------------------------------AEGPTLQEHLELQLGLALSDGLRRSVGRYIIGNIDDKGYLRSDPAEIAAATG---VGEEIVGEVLATIQSFDPPGVGARDLAECLRIQLCRQGKLTPHLE---RILEDHLPDVAAGRLHRIAQRLKVTVGEVQAMVDRLKELAPKPGTPFgeGDNRPILPDVIIEQIDGEYLVLVNDGLLPRLTINRTYRHILNEEgpGEAKAYVEERLHSALSLIRAIEQRRLTLHKVVSAIVERQRPFLEQGLAGLKPMTLRDVALKTGVHESTVSRSVAGKYAQTPRGIFELKFFFGSGVRTATGEeaTAGAIKPLIRQLIDGEDKHHPLSDQQIAESLHEQGIPLSRRTVAKYREELGIPPTAQRRRY-    
 74 UniRef50_B1ZUW1        RNA polymerase, sigma 54 su...   458    1e-127  1  32.2%   2:476   7:497     -SHDLRQRQTQSLVLAPQLRQSLKILQVAALDLRSVIQEELQANPTLEELPMEGESVEKPAETdeHEDVAPPGDDSPTRDELdiDEDWRDHFAngAQPFTAEDAEKRQHFFDSLVSETSLQEHLMQQVVLNDLAPPVHEALHQLIGNLDDRGYLAQSPSDIALQANLPYATVTE---ALKLLQSFDPPGIGSQTLADCLLAQLHAKGRGDT---LAARMLRDHFELLSRRRIPELSRKLGVAADDVQAAIEEIGKLDPAPGRRFAEDSNRVVVPDVVVEKEGDEWKIHLNSDYIPRLRLSSTYRELIAKGtsKEERDYLRERMRSGKFLIDSIEQRQRTIERITREIINAQLPFFEHGVSQLRPLTMTQIADVVGVHETTVSRAIANKYMKTPHGVFEFKYFFTTGYQAESGDSVSNTSVKEMLADLIALEDKSAPLSDQEIVAKLQEKGITLARRTVAKYREELGILPSNLRRDY-    
 75 UniRef50_Q4JMT6        Predicted DNA-directed RNA ...   457    1e-127  1  33.3%   1:465   3:481     MMPSLQVKQKQALVMTPQLQQAIKLLQMTNLDICNYLQDQALENPFLEVENGPSHETASDLGNGRQDEApdMAGGAALADDPTANADLENRFggHSQRGRPSDLDWDALANLAEQGPESLVECVLRQIDLTIFDPHQRVIAYALSEALEPTGWLGRELSDIAEACG---ADERDVEEVLALVQRLEPEGVFARNLAECLRIQAREKGVLD----AVMTVVLDNLQMLANGDIAQLARRADASTEDVSRCLKLIREFNPKPGEAYESAPLRVHAPDVIVTRGPDGWVVDLNRSTLPALVINEAYAAEIGKAARGKAAefASEALGSARWLRRALEQRNSTTLKIAGEIVRQQAAFLTDGLSALKPLALKDVAEAVGMHESTVSRVTSGLLMATPKGCFPLKSLFSVSLATDEGDARAAAAVRNMIEAIVKSEPAGKPLSDDAIAKLVSGQGVKLARRTVAKYREML------------    
 76 UniRef50_A9BRF9        RNA polymerase, sigma 54 su...   457    1e-127  1  41.2%   1:476   1:538     MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELANEEGDHDAAAGTREPAAPGAEATeqESRADQPSAAVEWEPSSDASssRTRGQGEEDEADATELARSAESLTDHLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPLDELAQGLAGDDLEehRFTVALRLLQSLEPVGVGARDLAECLTLQLRDQLADAevLRTALDICAQPMDLLARRDLRKLASLCGAREERLREALVLITRLEPRPGRRFADVQRQIVVPDVIVRPVRSgfSVQLNPDVMPKLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFDTILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASSTAVRALIKQFVAAEDPKKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL-    
 77 UniRef50_A4ISQ1        RNA polymerase sigma-54 fac...   456    1e-127  1  31.4%   1:477   1:432     MRAELWQEQRLQLSLTKELVQAIELLQYSALDLEAFLYEQSLENPFLEIRRGRMRRRTSRT-----------------------------------------DKDRKQWLENISGRTETLAGHLLAQLPGLMLPAKEERMVRHLIAALDEDGYLRVPLAELAARFS---VSEQEVERALRFVQSLDPPGVGARDLAECLLLQLERRPERD---ELAETIVRHHFVAFAEKAWKTLAKQLGVSLGELQRVFELIRTLEPRPGIHYANETPHFIVPDLIVTRqdGGWIVTYNDDIHPELGWNKEYERHIVAVGDRHAERFMKEKYRQFTWLAKSLEQRKQTLVHLMGIIIDRQRSCFESGLSALKPMTMREVAEELGVHESTVSRAVRHKYVQTPFGMIELRRFFSSAATAGAGETASSVQVKAIIQTLISAEDRRAPLSDQQLADLLRDqgIAISRRTVAKYREQLRIPSSAKRKQYT    
 78 UniRef50_C5D7M8        RNA polymerase, sigma 54 su...   456    1e-126  1  31.9%   1:477   1:435     MRAELLQEQRLKLSLTKELTQAIELLQYSAVELQSFLYEQSLENPFLEIRD----------------------------------------YRLKRNFRNLSDKEKQQWIENMSTYSETLSSYLTAQLPALSLSEHEERIVHYMIACLDEDGYLRVNIEEIAERFA---ISKQEAEKALQIIQSLEPAGVGARNLQECLYLQLKRLPYRD---EFAEQIIQHHFSLFVEKAWKTLAKQLGVDIASLQRVWDLIRTLEPRPGIHYTKERPHFIVPDIIVQreEGDWRIFYNEDVHPELIWNRGYEQKISSCQDGQVHAFVKDKYRQFLWLAKSLEQRKQTLLNIMHVIVDKQKQCFETGFAALKPLTMREVAEELGIHESTVSRAVKNKYVQAPFGTVELRRFFSSAVSSvdEDAASSVKVKMFIRQLIEQENKQEPLSDQKLADLLHEqgVVISRRTVAKYREQLHIPSSAKRKQYV    
 79 UniRef50_B3E042        DNA-directed RNA polymerase...   455    1e-126  1  32.1%   2:474   4:456     -SLGLYQSIKLHQALSPQMQHSLAILQAPAVELSTIIQQELLSNPLLEISEDKP------------------LEGQSLEGLFHEKEKWYDYLGPNFEGAQRSIEDERKRQFFFDSqpPSMASELSRQLSLVCSDNTLLQAAQYIIGNLDERGYLNTELENIAHELGLAY---DLVEKALELVQSLDPPGIAARNLSECLLLQLKALGKENSLE---FRIISEYLTLLERKKLTEIAKQLKVSLKQVQEAVESIRSLNPFPGSKYRSEEKEKIivDLMVVKEAQDWKVYFNDEFMPRLRINHHYESLlkNDKDPSLKNYLKEKKRSGLFLIKCLRMRENTLLKVAEAIVHCQKDFFDSGPHALKPLTMSEIAQKIDVHETTVSRAIANKYVKTPHGIFELKYFFNSGFQKQTGEFVANQTIKEAIERLIRNEDPRSPLSDQQIVELLAKEGIKMARRTVAKYRAHLKILPSHLRR---    
 80 UniRef50_Q7UQ69        RNA polymerase subunit sigm...   455    1e-126  1  32.1%   1:474  31:519     MSVGLQARQSQVQKLAPRMIQSMEILQMPTLALQERIEQEMNENPLLEqdDEIPDKDTRSESEKELVVDNDHDNKDDFERLLNMDSdfDDSFRQSANRMSEDADRRHDMMANAQSRPESLNDYLLHQLAEMDIDDEVEQIAERIISTLndGGYLRMPLADLLPS-GHSKEDFEKAEEALAVVQSLEPSGIAARDLSECLISQL---DPSVAHFDELSTLIRSHLNDLAENRLPQISKKTGFSIELIQELREELHLLNPKPGAAFLETYVPNVTPDIILEQDegEYRVRLDDDRVPTLFISEYYRRRLQASdsDAEREFIKQKINGAQWLIDSIEQRRSTLTRVSEAIVEHQKRFLDEGPEAIEPLKMQQIADKVGVHVTTVSRAVDDKWIQTPRGILPLRRFFVGGTQTEDGDDVAWDTIRLKLQELIDKEDKSKPYSDENLVDELKKAGMTVARRTVTKYRKKMGIPSSRQRR---    
 81 UniRef50_C7ILW5        RNA polymerase, sigma 54 su...   454    1e-126  1  28.9%   3:476   1:452     --MNIEINLNQKMAISPQMQQSMEILQMSTQELMDYVKQLAVDNPVVEFDDQPYDNDRSEILRKKLE---------------WLDSVNKEYRVYNHDL--EEDEENKDVAHYMRGDEEDLYQHLQSQLNLMKAPKELCKTIQYMIGCIDKNGYLQEKTDDMAKAL---RIDEKKAEMALHQLQLMEPAGVGARNLKECLLLQLERLNQNNP---LVITLVNCYLELLGKNQLNLIAKTLGVSIDKVNDAFKIIKKLNPRPGMGFGAkdIHYQTPDLVIVKFCDYYEVLLNNFSDPHISISSYYRNVLSQNPSDNVKNYISDKLKEADWAIKCITQRNNTLLNVTKMLVNQQIGFFDKGPSYLIPMNQKCIADKLQIHESTVSRAIRGKYLQCSWGIFGLDYFFTNGLSIGYDSQIVPDAIKSDIKKIITEEDRKKPYSDQKIAEILNKKGISIARRTITKYREDMEIPKAGMRKEY-    
 82 UniRef50_Q01PW4        RNA polymerase, sigma 54 su...   453    1e-126  1  32.1%   1:474   4:532     LSPRLQLKVAQKQILTPGLVQMVTVLQLNRLELKEMidRQLLEAAVLTDANSVDGSNGSAINGNLFPDaaEAPAATDPFDEIDFGSFFDEYLDPGYKSPASESV-EKPSFETFLTAPITLGDHLRSQLSVSLASDEVRDAAESIIGNLDEDGYLSASLDEIAAMGSH---TAAEVEQALIVVQSLDPAGVGARNLRECLLLQIESINGR---GGVAWQIVSNCLRLLETKQYKEIAKVLSRPLEHIETAVHMIQHLNPRPGLRYSGAGARVVEPDVFFTKDGDDYIIQMNDEDVPQLRLNAQYRRMLDRENgkEVRDYVRERYTSAIQLMKNIEQRKQTILKVCQAIVRRQTEFLSHGLDYLKPMMIKEVAEEVGVHPSTVSRAVASKYVHTPQGVFELRYFFSEAVQGPSGGGTPLLLLKRKVKKMIDDEDRSKPLTDEQITLLLQGEGINVTRRTVAKYREDMKIPSTHQRR---    
 83 UniRef50_C7IQW3        RNA polymerase, sigma 54 su...   453    1e-126  1  35.0%   1:449   3:427     MEFELKLQQAQKLIMTPELKQAIEILQLNSLELNALIEQELETNPVLEKEETSEEENAYEYDLYELSKYIRETEERMYYDDSDDEEIEEVNY------------------ENFVSPKSSLSDHLLFQLHITPVPPKIQKICEYIIFSLSPSGYLREDIKDIAEIL---ECSEEEVLDGLSVVQSFDPPGIAARNLQECLKLQLLA---QDSYKGIVKKLVDYHLEEIAEGKYSYLAKLYNISLKEVQQAVDFIKKLNPKPGSSFSStdVGYIIPDVEVIKREGEYFVIVNDSVTPKLKINNYYHSILNSH-DEEAKKYINSKLQSAMWLIKSLESRKETLYKVVKAIVELQRDFLDKGINYLKPMTQKQIADIVGIHESTVSRAINGKYVATPRGLFEIKFFFQSGISNRNGNEISAESIKNLIKKLIEEEDPANPLSDQKIADILKEK----------------------------    
 84 UniRef50_D1N390        RNA polymerase, sigma 54 su...   453    1e-126  1  29.6%   2:477   5:472     -QQTLSTTLRQEQQLSARQLQSLELLNLPALELEERLTQELAANPLLEAEVQSEPVELPAQPEAPEKEDESTLDERAVENEEWAD----ELPMPPGTGEAGFTNEENDFMLNSLSDAPTLQEQLFSELATCDATPEVRRLAEEIIGSIDDTGYFRSTPADLAMSENAELADAEAALK---LVQSFDPPGVGCRDLAECLKLQLERTGELTPLY---REILDHHLEEIARNHLPQLARTLRISLEELNRCLARLRRLNPYPGSALAPEHADFVMPEviVRGADGEYEVAPRRNGMPRLFLAERYLKLLETPdpTADKAYLRDKLQQARELMRALDLRQSTIVRIAGVIVATQRDFLDNGVAALKPLTMKQAGEMLELHETTVSRAVANKYVETPQGIFPFKFFFTAGFTGEDGTSVSNRAVMEKIKELIDKENPAKPLSDEQLAQMLKAGGLAVARRTVAKYREGMNIPSSSLRRKHM    
 85 UniRef50_A4GID2        DNA-directed RNA polymerase...   453    1e-126  1  35.0%   1:474   3:495     LSQSIKLRQKQSLVMTPQLQQAIKLLQMTNLELSQHLQEQMYDNPFLEVNGATETetEGQNDVSALRESAALADDPTQNQEIENRFDTALVDMPSNPGVRNKFADGDFDPIDSLTSEDGFYPMLFKQMNLTFSDPADRIIATHFINALEPSGWIGNSVEAIAEESG---CSVEQAETVLAALQGFEPAGLFARDLAECLKIQLIENNQFSHLFGQ----LLDNLEQLGRGEIKQLARKFKCAPEDIVEMLSIIRTLNPKPGEHLGIEFREMPSPDVIVTRKKQGWSVELNRSTLPSVLVNEHYAELMAKQkdQAVQDYSAETLTNARWLKRAVEQRNQTTLKISAEIIRHQTDFLEKGLDYLKPLSLRDVALAVGMHESTVSRVTTGLLISTPRGGMPLKSFFSVNIASRDSdnASAASVRNMVKKIISQEVPGKPLSDEAISKVISEQGIDLARRTVAKYREMLNIPSSSQRR---    
 86 UniRef50_C1F1M0        RNA polymerase sigma-54 fac...   453    1e-126  1  30.2%   1:474   4:554     LQPKLNLKVAQRQILTPGLMQMVSVLALNKLELKEMIQAEIAENPVLEEMEESVPLLDDVARREEDHdsSEESEKKDPFDEIDFGSYFQDYLDPGFRTPNSFELTEKPSIENFLSAPSTLSDHLLWQLGALTLTPAIRDAAEYLIGNLNEDGYLPADEEDLLEGYLREQLAPEGAESvlEVVRQLDPIGIATRDLRECLMVQVAAQRREFDLieTAAAILDRHMLLLQKRDPRELSKAVARSVEETQRAIDFIRTLDPRPGQRYNRSEARLIEPDVAFVKRDDEYVVVMNDEDLPSLRLNHGYRRLlkDGAEKDVKDYVKERYRSALQLMRNIEQRKNTILKTCESIIRRQTDFLENGIEAMKPMMIKEVAEEIGVHPSTVSRAVSNKYVHTPQGVYELRFFFSEGVNGPEGSGTPLMLLKRKVKKLIEDEDPSKPLTDDQIAQMLQSQGIEVTRRTVAKYREDMKIPSTHQRR---    
 87 UniRef50_C6W3I8        RNA polymerase, sigma 54 su...   452    1e-125  1  32.1%  13:473  12:477     ------------LKYSPLQIQMLNLLHLTTMELEQRIKEELEENPILEEG-KEDSTSEEAPEEFDDADISSGGDDNTVQDYYDWDEFRDDDIPDYKTYANNQSADNELYTRPMVEA-ISFRDDLKQQVHFLQLDERQQLIADFILDSLDEDGFLRRESDVIADDISFAniDTDEVNTMLKVIQQLDPPGIAASDLRECLLIQLNRMDNQNDTWKWAYKIVCDAFDELGSRNYDKIMRITGLDEESLKKAIQLITTLNPKPASGLRNDanESIKPDFMLWyeDGEIEVQLTWGNSPALKLNKVFTQMAEEKRDKATNQFLKNKMNSAKWFIDAIKQRENTMLNTLKAIVKLQYDYFQTGdkKLRPMILKDVAEIIDMDISTVSRVTTNKYVQTPFGIVLLKDLFTEGVTNEDGTEVSNREIQEAIREIVSEEDKRHPYNDQQITDMLAVKGYSVARRTVAKYREQLNIPTARLR----    
 88 UniRef50_A6CNF4        DNA-directed RNA polymerase...   451    1e-125  1  28.6%   1:476   3:429     LNTGLWQRQSLKLNMTQQLTQAIELLQYSSQELNAYLESKALENPLLQLEPVSYEERTR-------------------------------------KRNQEYNGMSIDWIEEIAVQQHSLWEHLNAQLNLKTLNHEDRNTLSLLFDSLDENGYLPSNIESLFR--------VSDLSTYIEMLQSLEPAGIGARNLKECLLLQIQR---DTEAPEHAHSIIEHHFAAFCEKTWKTITKELGITLSDIQLTADYVKTLNPRPGARFTSEAPQYIRPEMNVTRSKDGLEVQLVDGSVMKIKYNSEYDELIASSKDKEGLKFMRDKKQEFQWLLKMLDQRKTTLMKVGKCLVERQEAFFRYGPKELKPLTLKEVAETIGVHESTISRAVRGKYIGTPCGTYEMKALFVSGVGKDE-DAVSSEGIKAEIMQMVTTEDKKKPLSDQAIAVMLQEKGLHVSRRTVAKYRDQLNIPSSTRRKRY-    
 89 UniRef50_D2R5L0        RNA polymerase, sigma 54 su...   451    1e-125  1  31.0%   1:474   3:489     LSFGLEARQVQVQKLAPRMIQSMEILQLPLQELQERIEQELAENPLLEMLDRddEQVERELPNEKDVDdeAHNNADDFERLLNLDREVPDYFDESRRSSNRMEEDSddVISNVADRPESLQDHLLHQLGEMDLSLELMQMAERIISTLddGGYFRSSLRDLLPIDATKE-QIALAERALALIQQLDPPGIGARDLRECLLLQLT---PTMFMYEELKTLITSHLEDLRDNRLPLIQKSTGYSIDRIQKAWSELRKLNPKPASGFSEAFVPNVTPDvvVRGEDGQYLVQVDESRTPTLHISKYYRERLAstATPEEREYIKRKINAAQWLIESIEQRRSTLTKVSQAIVDHQTKFLDEGPEHIEPLKMQQIADKVGVHVTTVSRAVDDKFIQTPRGIFPLKRFFVGGTQTAEGDDVAWDIIRIRLQEIVDKENKQAPLSDDDLVEELKKQGLNVARRTVTKYRQKMGIPSSRQRR---    
 90 UniRef50_B5ZLK5        RNA polymerase, sigma 54 su...   450    1e-125  1  34.3%   1:475   3:447     IGPRLALRQAQTLVMTPQLRQAIHLLQLSNLDACSFIEQELERNPLLERANLAGLEELRPKVVAHGARHDPRLERVP-------------------------DQDWAATTGTLPGPAPSLHERLAQQVRLSWRDAGDRLVGAYLITLLDADGRLVPPTAVIAQSLGT---TFDHVERVRQTMMQFEPTGLFAHDLGECLAAQLRERDRLDP----AMAVLLRHLDLLARRDLRRLQGLCGVDAEDLADMIAEVRTLSPRPARDFGDPAACSVIPDVLLQPadGDWMLELNPETMPSVVVNSALSTRVALRARREDRPFLNERLASANWLVRALQQRADTIIRVATAIMRRQRGFLDHGIGHLRPLVLRDIAETVGLHESTVSRVTANKYIATPRGLFELKYFFTTAIPGRAGgdHSAEAIRHRIKTLISQESDGKILSDDAIVTRLRKEGIDISRRTVAKYRDALRIPNSAQRKR--    
 91 UniRef50_UPI0001C34EB5 RNA polymerase factor sigma...   448    1e-124  1  29.2%   2:477  16:469     -RTELFIKAEQTQALSQKMILSNEILQMGVQELCEKLGEIFLENPVVDLSQPSPED--------------------ERMAKYQWLESLNDRNRDTYMHESRDDEEGNDDWKFRQEDGESLQDYLWSQISLKELSGKDEEIITYLMESLDDRGYLDEPLDSVAERFHEPK---ERVEEILSQLQTLEPAGVFAKDLSECLLLQLKRNRMDSPA---AEEIVREHLELLAANKIPVIAKKVHLSVEETAEICQAIRNLNPRPGSHFAseQLSYLIPDVTVVKFADRFEILLNESTYPTIEINDYYRKMAVQSDSSQVHDYLREKLRQAEWIRTCMEQRGRTIMNVTKTILMLQSEFFEKGPSHLKPLKQSEVAEMIGIHESTVSRAVRQKYLQCSWGIYPMNYFFSRGISEegGRAVSVQEVKNALTEIIREENKKKPFSDRILAEKLEERGFTISRRTVAKYREELGIPDAGGRKVFL    
 92 UniRef50_A0RKT0        RNA polymerase sigma-54 fac...   448    1e-124  1  30.4%   1:474  24:455     LKASLLQEQSLRLAMTQELRQAITMLQYNVQELSEFLYEQSLENPLIELGGFEREKKKSSNNSKSTSKQVEN------------------------------------QMEIYSVDSTTIQQHLLNQIQYYKIEEEERKVASFIIMNMDGNGYLQETNEELANLLSAP---LHVVDRSVELVQSLEPAGVGARNIQECLTLQLKRLQRRN---GLAEEVVEDHFAYFVKKDWRKLVQVLKCSNEELQDAVNCITSLQPKPGLAFSSDKPLYIVPDMAVKKDGDRLVLQMNERNMPRIEIHSEYSALLNNSE-SEVASYVSEKYQHVQWIMRSLKQRKQTLLQVMTIIMEKQRDFFWKGPEYLKPLALKEVAEELSVHESTISRATRNKYVQTPHGLFEMKSFFSNAVSTTEDEAVSTKRVKQFIQTLVEAENKKKPLSDQKISKLLEEeeIVISRRTVAKYREQMHIPASSLRK---    
 93 UniRef50_C5ELZ1        RNA polymerase n=3 Tax=Clos...   448    1e-124  1  29.1%   3:477   1:461     --MDLKLQVKQTQTLSQRMIQSAEILQMTSQELNTYINELALENPVIDIVEPPAGNQQKES----------------IEEQQWLNSFNEENYYLYQRQNNDDDYDFKNSWNINTDDGETLQDYLWSQLVTEEFSSLETDMIKFMLESLDNKGYLGEGVEDIASYF---QTDLSVVERLLYTLQQLDPAGVCARNLEECLSLQLERRQMLTPVLS---SIINGCLEMVARNQIPAIARKLHLSQAEAAGYCQIIKSLNPKPGVSFSseKLRYIIPDVTIVKFKEHFDILLNESMYPNIEINSYYSQMNRNPDSAELKEYLSNKIRQAEWVRQCVTQRGKTLMQVSKSILEHQEGFFTYGPSHLAPLKLADIAQELDIHESTVSRAVSKKYLQCSWGVYPMNFFFSRKVspDNASAVTAADIKRALREIIDAEDKKKPYSDRLLGEKLAERGISISRRTVAKYREEEGIADASGRKEYV    
 94 UniRef50_B6YQD2        RNA polymerase sigma-54 fac...   447    1e-124  1  29.3%   4:474   3:468     ---KQQLSYKQQQKFSPQQIQQTKLLELTTLEVENRINEELEENPVLEEIPEPDEYGLQIERLNKSDT-----------------FLGGSLREDNVHSYKFQQNGSLNRWEMVYAEPESFHEYLLNQLKLKELSEEEIKIGQYIIGNMDDNGYIRQSFQTLSDDISFqdVSISEIKKVLESIQGLDPPGIGAGDLQECLLLQLRRKKI-TPIRCLVIDILEKHFAIFAKKHYDSLCKIYNISKENLKDVIREVALLNPKPGNICeeSKLAHIIPDFIVEIIDGKLIFTMAKRNMPTLKVNEGYSEIlkSLKKREVVAFVKKKINSAQWFIDAIKQRNTTLYNTMLAIIELQQDFFLTGEeaLKPMKLKDVSQLCGYDISTVSRATINKYIQSDWGIYPLRFFFSEAMINEEGEEISTREIKAILKFFIKTEDKKNPFTDDVLANLLKKKGYNIARRTVAKYREQLNIPVSRLRK---    
 95 UniRef50_C9XR96        RNA polymerase sigma-54 fac...   447    1e-124  1  34.0%   1:476   1:448     MNFNNSLeqSQKLIMTTQLKQSLSILNMSKLELEEEIKREAENNPLVE-VEKSGEINWEEY--IKDMDRSRRLDRTEI----------------------SYNPDNEVNLENLVKYSSNLYEDLKFQISLYKLTDKELEVCEYIIDSLDEDGYLRTEEKVIVDTL---KIDEELFEKCLISVQQLEPSGVGARSLSECLMIQMASLGIYNEILE---EIVTKDLNLIANNKYKEISKKYNMSLQKCVELINIIKTLDPKPGRTCSVEKSVYIQPDVTVEKIDDEFIVYLNEKDSYQIRINSYYKDILKNSQSDeaKEFIKERLNSATGLMKNIESRKTTVLKIAEEIVKAQDEFLRKGTKYIKPLKMKDIAEKLEFHESTISRGVNGKYMLTPFGVYEFRYFFSSAIETENNEMASSTSIKKIIKETIKDENKKKPLSDDHISKLLKEKGINVARRTVAKYREELGIPSSSKRKEY-    
 96 UniRef50_D1R8J1        Putative uncharacterized pr...   446    1e-124  1  30.9%   2:474  12:494     -KMQQSLKQTQRMIMSPQMQQAIHLLQMPLMELVDRIETELEQNPILESIQDYPEEDQDLTRLEEDNSEADLDEEQPPEKElqIDEDFRDHFAESGNYYTKRTEEEEKQKNFQLnaHVSLFEHLMTIAQETFANPKDIQIAESIIGNFDERGFLQTSLTEIAVL---NDFSVKELQRVLKTIQTFDPFGVGASDLQESFLIQLRCQKKE---HSLAYKIIEDCYEDLLHNRLPIIKKHLNCSIEDIQKAIDkiSKLDLHPGASFSGEIAQTIVPDAMIKEEDGKLDIVVTSDFLPPIRLNKRYMKMLEDEssDATRDFIRQRVISAKWLLRNIHHRNTTIDRIAQFLAQQQHAFFQNPDGQLVPLTMKTVADNLGLHESTVARAVAGKYVETPRGLLPFRFFFTNAYMTDEGSDISAETVREAIKDIIDKEDKSKPLSDHKISDLLEIKGIHCARRTVSKYRAELNLGNTQQRR---    
 97 UniRef50_P38944        Putative RNA polymerase sig...   444    1e-123  1  30.5%   1:476   1:453     MDFALNLTQEQRLAMTQEMQLSIKLLQMSSFELQEYVEKELQENPVLDIKESNVDKVEK-----------DKLEYKEIIKNLDFDN--------YSHHSYDRNPDEEVSPFNFISEEKSLKEYLKDQIRDLDENQCIKTICLYIIENIDDRGYLILENE---EIEEELKISKELAAYCVDLIHSLEPHGIGARNLAECLKIQIKQKDMDE---ENIFIMIDKYLEFIAENKYNVIAKELNIDVKQAQEYGDLIKTLSPKPSRGFYteSVRYISPDAYIKKIDSEYFIIMNDDLTPRLTINAIYKDIINNDTDKDAVSYVKEKLNSALFLIKSIQHRKSTIYRVLEKIVEIQKDYFDYGESYLKPMTLKEIASSMDMHESTVSRAIRDKYIHINRGIVKIKDLFTTGMAAssEENVSSLIIKNSIKKMIDNEDRKKPLSDQKICDLINEEGMNISRRTVAKYREEMGIKSSKGRKRF-    
 98 UniRef50_C7PK09        RNA polymerase, sigma 54 su...   439    1e-121  1  31.2%  16:476  15:497     ---------------SPQQIQLMKLLQVPTAVLEERIKEELEENPALEYGEDAHEDEYKDPQEenNEEGDDDEFEPDGSENEYDNIDISEYVSEGDDDIADYKLRDDNYPDqpVRVETSFHEHLLEQLGMLELDERQNAIAEQIIGSIDDDGYLRREVSAIVDDLSFSqtDEEEIRELIRMIQEFDPPGICATDLKECLLLQLRRKPQDDFGVVGAYLILENYFDEFTKKHYEKIQKGLNMSDDALKEAIGQIIKLTPKPGGNFAtkAESYVVPDFFILNNNGKLELTLNSKNAPDLRISEGYRDMLKEYDRGDKKdfIKQKIDAAKWFIDAIKQRQHTLLSTMESIMGYQREFFLTgeTTMRPMILKDIADITQLDISTVSRVANSKYVQTEFGTFKLKFFFSESLSTDSGEEVSTREVKKILSDLIEGENKRKPLSDENLTKMLQDKGYNIARRTVAKYREQLNIPVARLRKEL-    
 99 UniRef50_UPI00016C46F0 RNA polymerase subunit sigm...   438    1e-121  1  33.1%  19:474   1:480     ------------------MIQSMEILQLSITDLQAKIDDALQENPFLELKEKLGETDEPPTDFNPDApkHDETGDLEFNRLEELNRDWDDHFNEEHRGSRASLEEEGDrmANMPDRPPSLQDYLADQIGELDIEEDDRRLARHICSFVDRTGYltVTLEEIAA-LYDRLVTPEDVEDVlhVVQRLEPAGVAARDLKECLLLQV---PHDAPHADALRTLIRDHLEDVAYNRIPVIQKATRLEIAAIQEAIEEIHHLDPKPGLKFSDSGTQYVMPDVVVErdDNDYTVRLTDEWVPRIRVSKRVVDMCKRQddDKVKDKLRQKLQQADWLVKAVEQRRNTLMKVTKAIIDHQRAFLDFGPEHIQPLKMQQIADQVKVHVTTVSRAVDDKWVQTPRGVFPLKRFFGGGKAKDENDVNSeeVMKQKLLELVSNEDKANPLSDEELVARLKAGGCPVARRTVTKYRKMLKIPSSRQRK---    
100 UniRef50_B3QT08        RNA polymerase, sigma 54 su...   437    1e-121  1  31.9%   3:476   4:513     --QSLSQRQVQTMRLSPQQLLYTKLLQLPLIQLEQRVKQELEENPMLEEFSESDEEAGQPEesQNNDDENKLNEKSEQNEekEFDQEIEEYFPDGDEEgpSFREEPSDESYFQPVFHESFTERVLNDLRYQDVTEKELAIAEEIVGNIDEDGYLRCPIEVIADGLMTteVTEAEILKVLEKIWYIDPVGIGARNLQECLLIQLEAkdIDDTLYEQAKLILNKYYHEFTMKHFEKLMTLLSISPEELTQALLLIQSFNPKPGGDVSASS-NYIIPDFIVTFDGKNLVAFSNERNSFQIRISEQYKPLLEdsQPKGAKEFVRNKYEAAKNFMTAIEMRRQTLQRVMNALLNLQYEFFTIGPNRLKPMILKDVAEVAGVDISTVSRVVNGKYVQAHKGILELKYFFSTGLETESGDEISNKLIKEKIKSFIEKEDTRKPLSDDKISEMLQQNGFKVARRTVAKYREQMNIPVARLRKQI-    
101 UniRef50_Q0G1W5        DNA-directed RNA polymerase...   437    1e-121  1  35.2%   1:475   3:461     LAAKLQFRQSQSLVMTPQLLQSIRLLQYGHGELKTFLEAEIERNPLL--------SMAPAKPLSKSIQAVDGPQ----PGEGSAMPSRSERYGGTSGSGQRFDGLDTG-FANVADTNISLLGHALAEARDIAGSNDTRTIAEAFADELDENGYCRCDPAEFAIANG---FDPDRTTEVLLKLqeAAPAGLFARNLKDCMAIQLKRRNRYDPIIAK----VIDNLELLANRDFAALRRLTGEDDHGLLDILAEIKSLDPKPGHAFDGRGGEGIEPDVLISADggGWVVELNPATLPRVLTDRTYLKRVRkaATEEERSFLSECLQSASWLERALESRAQTIMKVAEEIVKRQGGFLVEGISGMKPMTLAAVADAIGMHESTVSRVTNMKFVATPRGVFEMRFFFTRAIAAANGGdhSAESVKLRIKRLIDAEVPGKVLSDDEIAAILKKEGIDLARRTVAKYREAQSIPSSIQRRR--    
102 UniRef50_C9KMQ5        RNA polymerase sigma-54 fac...   436    1e-120  1  32.6%   1:476   4:455     IEQSLGMNLSQHLAMTMQLQQAIQILQLSSQDLCAVIEKEYLENPVLEMEYPTGRRELYEQDGSMNVRA------------------LADYLDGGSKQPAYFTDEDDRQFDAAAPLHMTLEEELLEQVNFTFKENeeRAVATFLVGSLDSRGYLTLPTAEAARAMG---CSEAEILRILAVIQSFEPAGVGARDLAECLRLQAERQGI---YEGLIAAVIDRHLDEVAAHRIKEIAAAEHVEPAAVQMAVDIVRRLNPKPGAAYGTGAPAYITPDVIIRRGEQGYEVEVEESDVPQLHISALYRQ--SDTFDKATQKYIASRLHAASWLINSIEQRRATIRRVVEEIVRRQPAYFEKGPAFLQPMTMKDVADTIGVHESTVSRAVANKYAELPTGIVALRSFFtrSTRSETGEDVAAAQAKSAIEALIKGENPKKPLSDQKLCTLLKSKGIALSRRTVMKYREQLGYDSSVKRKRY-    
103 UniRef50_B0RT01        RNA polymerase sigma-54 fac...   435    1e-120  1  38.3%   1:475  21:477     MKTTISAQLGQQLHLTPQLLQSIRLLQLDGMQLELEIRRALETNPLLELEELADSSD-------EAPSAEDGATDMAAFDELPESTMWEV------QSSSWNGEDDDRMQRVAAGESTDPHVRILRELAL-DLDETDLGTAAFWLEQTDDAGYLTEALPTLQQLAATrgISVDAAEAIRQRLLHGDPAGLAACDLRECLQAQLAALPGRVPARHLAGRILAGDLDLLAGHDYALLARAHDADVDDVREAVRLILSLQPRPGDDLLQETNASVIPDVLAWHADGSWRVALNPATTHRVSINPVHERALAEAGDAA--QPLRDMLQEARWLTRGLSMRYETLLRATRAIVERQAAFLARGEEAMAPLTLKEIADEIGMHESTISRITTGKYIQTPRGTFELKHFFAVRL---EGASVSGQAVKAMVRRLIESEPAGRPLADEAIAGLLSRQGVNIARRTVAKYREQLDIAPARERRR--    
104 UniRef50_B8CYG5        RNA polymerase, sigma 54 su...   435    1e-120  1  32.6%   1:475   3:436     LRFDLDLNQKQELVMTPKLKLAIKLLQYSYQELENYLEEELKRNPLLEKESSNG--------------------------------DYFQNHKNYSDYDYSNDRNSDNNYENFVTYKINLTEYLESQL-YQVCEDHELKIARYIIGNLDDRGYLRTTVSEIGHHF---KVEESEVEKVLKKVQQLDPVGVGARNIREALLVKLGNLG-DDENTEIAKNIVTNFLDELASGKIKEIIKKIKKDKEQVLKAINLIKELEPYPAAGFakENTGFIVPDVIVRKVEGKFVVEMNSSLTPSLKINPYYYKMLQDVGG-ESREYLEKNYKSALWLIRSIEQRRITIYRIAMAITNRQQEFLEKGIKYLKPLTMEELADTLGIHESTVSRATTSKYIQTPQGIYELKFFFSGGVN-----GVSTTSIKAYLKEYIDKEGAKNPLSDKKLARILKDegVNISRRTVAKYRKQMGIPSSRKRKK--    
105 UniRef50_B5YI16        RNA polymerase sigma-54 fac...   435    1e-120  1  32.3%  36:474  38:467     -----------------------------------YIQLELMENPILELDEETENIQENEVSSEEY----EEPVAVDKLEKIMIDEYFAERADDGRDLGynPGVEEKPSFELFYSTTTDLWEHLLWQLRLSKAPDKIRAVAEVVIGNIDEDGYLKATEEEIAKM---SDTDNETVKQAIALVQEFDPAGVAARDIKECLILQIKALGLGDT---LVQSFIEEHLEDIKKKKYENIAKRFGISIDEVIKSVKIIEKLEPRPGRNFSKTQVNIPVPDVYVTKVEGEYQIILNDEGIPKLRLSKIYRELFTEKnpVQEKKYLREKFKNAVELLRSIEQRNKTIYRVTESLVKFQKEFFDKGVSYVKPLNLKDIAQDLGLHESTISRVTSNKYLACEHGLFNFRFFFSNALSSNHGG-ISTTLVKDLIQKIINEENHTNPLSDKEISDMLKKQGIDIARRTVAKYREELKIPPKPLRK---    
106 UniRef50_D2UDB4        Probable rna polymerase sig...   433    1e-120  1  38.3%   1:475   1:456     MKPTVSAQLGQQLHLTPQLLQSIRLLQLDGLQLEMEIRRALENNPLL--------ELEEPEAATEAETAVEAVLQTAAFDELPEPSMWDV------PATGWNDGEDDRLQHIAAGESTDPHLRVLQRLAL-ELPPREIEAAAFWLEHCDDAGYLDDALDTllLACTRLDLSAAQVETARQRLLHGDPAGLAACDLRECLHVQLHDLPGPVPGRHLAARILDGDLHLLASHDYALLARKLDAEAEDVREAVRLILSLQPRPGDSLQPQDLGHVIPDVVAWQADGSWRVALNPATTHRVNINPMHERALAEAG--EAAQPLREMLQEARWLTRGLSMRYETLLRTTRSIVEHQAAFLNKGEEAMAPLTLKEVADAIGMHESTVSRITTGKYLQTPRGTFELKHFFAVRL---EGAAVSGQAVRAMVRRLIEAEPSSRPLADEAIAALLSRQGVNVARRTVAKYREQLDIAPARERRR--    
107 UniRef50_C9BP10        RNA polymerase sigma-54 sub...   433    1e-120  1  28.6%   2:476   6:442     -NFSQKQQQTQKLAMTQQLQQSIQVLQYNSEELLAFVENQAMENPLVEVVEPE----------------------------------WQPDYIKA--SSSSYEGEETNYLNQIPDTKGSLFDSLIEQVHLNYRDTFLRKIVLYLVEYIDLNGFLTISLEEAGKEIGATPI---QMLDALTLIQQLEPAGVGARSLQECLMLQTER---DDYAPELAYIVLEECFEELVERKWKEIAQRFSVDLHAVQQIFDYLQTLSPSPGRIFDRSSELYIIPDVRVLVDDDkvQVISNRKNQPNIRFQESYFKQMSQQADKETENYLKERKQEFEWLKKTILQRGDTILRVAQVIVSRQKAFFIDKERPIKPLTLKEVATEIDVHESTVSRAVNGKYLETDFGVFELKKFFTTRisTEQTEDLSADTAKKKLQELVDQEDKNKPLSDQKLVELLKKDEIAISRRTVAKYRDLLGIPSSSKRKRY-    
108 UniRef50_A5EVL1        RNA polymerase sigma-54 fac...   433    1e-120  1  33.8%   3:475   6:467     --QNLNINLKQQLSLTPQLQQAIKILNMNQQDLQVEIAQMLTQNFMLELDD-----HLQMQRVDSEEEPPKEGLLDELNAELEYDCDWEEVYDSDWHDHAPY-REQEIDFDAIIEARPALLPYLREQLQQMPLSPEVLGAAEAFISHLDEDGYLREKCADLAQQ---YRIKMPVAEAAIQAIKNCQPSGVGAFDLEDCLNLQIALLPENTPYLSVLKRIMTRHF-LFIGKNPQLICNRLDLNESDYEQAVLLLKTLNPRPAQEFAHEHGQYIRPEVIVREKGGISFIETDEHIQPLLRINAEYAKLTQSAVD-QDKVLLQAQLNEARWFINAIDKRADTIQRVASVIVALQQDFFQEGEKAMQPLTRQKVAELLNVHESTVSRAVNGKYLMCKRGIFELRYFFSSQLETTDGEEQSSTAVKAVISEIVRQEDPKKPLSDQKIADILLKKGYKIARRTAAKYREELGIATSTMRRE--    
109 UniRef50_C8N804        RNA polymerase sigma-54 fac...   433    1e-120  1  33.8%   2:475   4:473     -NQSLDLSLKQGLTLTPQLQQAIKLLNMNSLDLQVEISAMLMQNIMLERKNDsqERGSGSDENENSEHDPDNGLIQTLSGELEYDSTWDEHYDHDWKDHQPYHEEES-NLELYLSGRPDLGAWLEEQINQMplSEARRRAALIVAFELDDDGYYRADNHKLAEQ---YQLSAADIADGLRIVQQCQPTGIAARDLEECLNLQIAALPADTPWREELQKIMQRYF-GFISKNPAMIRQRLGMNEATYNHAIALLRSLDPRPGQSYTEQAPQYIEPEIIVREKNGISYIETGENIRPELTINQDYAK-IAEIAKGADKTLLQAQLQEARWFLTAIDKRADTIRRVAHIIVALQQDFFQEGEAAMRPLSRQKVAEMLEIHESTVSRAVNGKYLMCKRGIYELRYFFSAQLENSEGDDQSIIAIKALIAEIINGEKPEKPLSDQKITDLLNEQGHKIARRTVTKYRESMDIPTTTLRRK--    
110 UniRef50_P24219        RNA polymerase sigma-54 fac...   433    1e-120  1  28.4%   1:476   1:435     MDMKLQQVQVLKPQLTQELRQAITLLGYHSAELAEYIDELSLENPLIERKETDTPPLSYHKTNKNRMNAQEAG-------------------------------------LQLSNPQKTLQDALKQQSLDMNLTNTEKKIFNYLIHSLDSNGYLEEDIEEAARRLS---VSAKEAEAVLAKLQSLEPAGIGARSLQECILLQLQRLPNRN---EQAEMLVSAHFDAFAQKKWKTLSVETGIPLHTIQDISDDIAALHPRPGLLFapEQDVYIEPDIFITVKNGHIAAELNTRSFPEIDLHPQYRTLLSSGSCQDTVSYLSAKYQEWRWLSRALRQRKQTITRIINELITRQKDFFLKGRSAMKPLTLREVADCLSLHESTVSRAIKGKTIQTPYGLFEMKLFFSAKAEASGDGDASNYAVKTHLENLINQEDKTKPLSDQKLVDLLYEqgIQISRRTVAKYRDQMNIPSSAARKRY-    
111 UniRef50_A9H5R6        RNA polymerase sigma-54 fac...   432    1e-119  1  30.9%   2:473   7:455     -QPRQEFKQNQGLFMSARMRQSIQILQLSNAELHEFLDAEVEKNPLLERDPTTSAPLAERPGLAAPPPMMRAPGATGDAGRWTSDSGLDD-----------------DGTGRLAESAPALRDVMFEQLVLSGCTTTEREIGAHLIAALDPAGRlgGATDDIAATL---QVTLRDVEAIRQRMMRFDPAGLFATSLRECLAAQLQERNRFGP----AMARLLDNLDLLARHDLKRLRQACDVSATDLEDMIAELRTLDPKPGAEHGSTLT-VIVPDILMEQteGGWTLELNPESTPRVVLNSALSTRMSLRAHGAERTYLNDTLTSANWLIRALQQRSMTILRVSTEILRRQEDFLQHGPQALQPLNLRTVAEALNIHESTVSRVTANKYVATPRGVLPLKFFFVAAMTGNDGEIRSNIAIQSVIRRMIQGERPDAVLSDEAISLTLRRQGIDIARRTVAKYREAMGFPNSLQR----    
112 UniRef50_Q2B706        DNA-directed RNA polymerase...   431    1e-119  1  30.7%   1:476   3:442     MNAGLFQQQSLKLAMTQELSQAIALLQYSALELTAFLESRALENPLMQI----------ETENVRAMDPRRDRVRGASSKLKKDDRSWIEQIRAKDNL---------------------LEDYLISQLEIKYISPLMDKIIRRIIKSIDENGYLRESVTEIADELCVSEGDAAE---ALAELQLLEPAGIGARTLQECLLLQVQRLLSPDD---LAEVIMEEHFEWFADKKWKQLASLLGVELKDIQRVSDLVRTLNPRPAAAFSKESAGYIVPDVAVSWDGSSFLITVQDELLPKVSFNSQYYESFKSTGDKEVRKYLQDRSQDYNWIVRSLEQRKDTIKKVTMKLVEKQQDFFIEGPAKLRPMTMKEIADELEIHESTVSRTVREKYVQTPFGTFELKTFFTSAVKTTGADGASSASVKKKIAAMVEAEDKLKPLSDSEIMSILEkdAIVISRRTVAKYRDQLGIPSSAKRKRY-    
113 UniRef50_B0PGS4        Putative uncharacterized pr...   431    1e-119  1  27.7%   3:475   1:446     --MELGVRLEQNQILAPRMEQSVRILQMDSVQLGEYLKELALENPVAE-VEPPPQREQKEKLAQRKLEWLENQTRREQENMGYYDD----------------DGDLTPEQNTPAPQDESLTDHLLAQVESAAVPRALAAAARYVIGCLDDNGYLKADPEQMRAKAGACDA---LLERAIALVQSFDPPGVGARDLAECLCLQIPASD------ALARRLARDFLPEIAKKRVGVLAAKTGASAGEVEAAVARIRRLNPKPGALYghVVAHYITPDIVVTSFGDHYNVMLCEFAYPQVRLSDSYLQIARETADPEVIKYIGEKIDQVNWVIKCIENRNRTLVEVARAIVRQQERFFRYGPQHLGVLRMREIAGLVGLHESTVSRAVRGKYLQCAHGVYPLRYFFVKG--PEHGGAVSSETVKYKLRALIDTEDHTHPFSDRALCELLAADGISISRRTVAKYRGEMGVPGASGRVR--    
114 UniRef50_C8PV20        RNA polymerase sigma-54 fac...   430    1e-119  1  38.9%  51:474 161:596     --------------------------------------------------DADSDYRYDEEYGLDGIDSSEHLSSQQV--DMPVDAQWDDIYSYESSAATGIDSEDSQD-DYKLATQGNIQDYVRWQLNLRRLSTIDMLMAEYLIDSMDERGFITLSNDELFQSFDTmdLALEDIELVVKQIQNCEPLGVGARNLAECLLIQLNKLPSDTPSWQAAKQILM-HSEFFANNNINALLKSSNLDVSEIQPALALLRTLNPNPALSYEKSQRqyDIPDVIVVQRGQHWEVSLNPETLPKLRINQVYAKLVSRNDNSEQGVYLKEQLYDARLFIRSIEERNQNLLKVATCIVKRQQAFFEQGVMAMQPMVLKDVADEVGLHESTVSRITTSKTIVTPKGLFSLKYFFSSQVSSDEGEGVSSTAISAMIKQMIEAEDPKKPLSDSSIMKNLQDKGIDIARRTVTKYREGMNIGSSTQRK---    
115 UniRef50_B4SIK0        RNA polymerase, sigma 54 su...   430    1e-119  1  38.7%   1:476   1:458     MKAALSTQLGQQLHLTPQLLQSIRLLQLDGLHLEQEIQRLLDSNPLL-------EIEEAEAPAAESTDADATTLETAAFDELPESSMWDVA------GSSWQDGDDDRMARIAAGESSDPQLRVLQRLSL-DMDDRELAVAAFWLDHCDEAGYLQAPLAQLQLLASAqdIAADGVEAIRQQLLHGEPAGMAAQDLREGLQAQLRSLHGVVPARHLAARILDGALDALAAHDYPALARQHDAEIDDVREAVRLILSLQPRPGDSLLPERNAVVVPDVVAWHADNQWKVALNPATSRRVSINSQYEQALAET--SEAAPALREMLQEARWFSRGLSMRYDTLLRTARVIVERQAAFLVRGEEAMAPLTLKEVAEEIGMHESTVSRITTGKFLQTPRGTFELKHFFAVRL---EGASVSGQAVKAMVRRLIDAEPAGRPLADEAIAGLLSRQGVNIARRTVAKYREQLDIAPARERRRL-    
116 UniRef50_C7R9H7        RNA polymerase, sigma 54 su...   428    1e-118  1  38.4%   1:474   1:490     MNPNLQLSLSQQLKLNPQLQQSIKLLQLSQLALQQEIQYQLDNNPLLTLLDDsePEAASSVSNSELDVSPLPTVFPNNRDTNNIGSLANLRHIDSGQHHSTYSIHNDGESNLENQFQEslREHLEWQIQMSSLSRADMEIAYYVIENIDDAGFLTVSHQEIIEQIKQdrFDPDEVEAVIHQVQQLEPLGCASSNLQQFLLLQlpQQSALESALELAQRLVHHHFDYLCKHHYSKLIKRLSLTQQEMDDALSVIQCLRSKPNHQYIGEVTEYIRPDILVYNLQGSWLAQLASNNAPQLDINHQYAQALRQSNKTCDKHYLQQNLQRARWFMQSIEARNDTLKRVADWIVQHQQNFFDCGESALRPMRLKDLAEDLKLHESTISRACSDKFLQSPNGIYELKYFFSNAVPSTQGGEWSSKAIKNKIKQYVKAEPSRKPLSDIELAKMLQEEGIAIARRTVAKYREALNILPSGQRK---    
117 UniRef50_B8DD95        RNA polymerase sigma-54 fac...   428    1e-118  1  28.2%  13:476  19:447     ------------LNMTQQLSQSIAMLQFATADLVAFLEDKALENPLIEVIP---------------------------------GSDFATDFSYSSR-KSTGSSDDTDWLEQIADNKLTLADALKEQLHLMDVTQTQKIIVLYLIESLNDNGYLQIDLKDVSAALLMDDSS---VLEGLEILQSMEPAGVGARDARECILLQIERSP---DAPYIAYDVIQKFFTEFAEKKWKKIAAEMDVSLQDIQEVSDWIQTLNPKPGSEFESERVQYVVPDLILLQHEDEFAVSLAKQFLPQVRFQEAYYETMRATEEKDVAQFLREKAGEFDWIKKGIEQRENTLQRVGEAIVSHQKAYFLDNSAHLQPLTLKEVAEELGVHESTVSRAVNGKYMETTNGVYELKRFFASGLqnENTGDISSTTIKKLVQEFVAAEDKLKPLSDQKIVDMLAEKEIQVSRRAIAKYRLELNIPSSSKRKRF-    
118 UniRef50_Q9K710        RNA polymerase sigma factor...   427    1e-118  1  29.8%   1:476   1:444     MEFGLFQQQTTSLVMTNELRQAISLLQYSTVDLAAFIEEQALENPLIELKDRSDRVLSEHIRMMREERPE---------------------------GEGTLDWSQSSPFDYLHVERLNLSDYLIQQARDLPLNKNEFEWLCYFIYSLRDDGYLSRSLHSLQADLGLTD---QEAEKTLYHLQHLEPAGIGARSLQECLLLQLQRKKQRDP---LAETIVEHYMELLAEKRWKMIADDLQISLADVQRVYDCIQQLDPRPGSQIGGEPTNYLVPDVTIDWVEGELTILLQDDYLPKITLNRQYQTLLTD-GEGEAAQYAKEKYHQMQWLVKSIQQRQQTLLKVTEAILRKQRAFFEEKEGALQPLTLREVAEEIGVHESTVSRATTNKYAQTPRGLLELKSFFVSSISSRFGegPSSDSVKKLVRKLVEEENKAKPLSDQKIAHLLKDqnVEASRRVIAKYRDELGIPSSTKRKRY-    
119 UniRef50_B9JZG8        RNA polymerase sigma-54 fac...   427    1e-118  1  33.9%  48:475  15:472     -----------------------------------------------EPGTDSEAPPAPAPSDTLQSDWYEHGGDGDLNERLDAntDAPEMLGQWKSMPGAQGDGEGYDLDDFVAGKVSLRDHLGQQLPFVLSSASDRMIALALIDQLDEAGYLRADLDEVATQMG---ASRDDMERILAALQTMEPAGLFARSLGECLAIQLRQRDRLDP----AMAALIGNLDYLAKRDFASLKRLCGVDEEDLLDMLAEIRKLNPKPGAGFETDALETVVPDILVAPseGGWLVELNAETLPRVLVNNAYFTEIRRskAEGEQAFLTDCLQTANWLTRSLDQRAKTIMKVATEIIRQQDAFLRHGVDHLRPLNLKTVADAIKMHESTVSRVTSNKYMLTPRGLFELKYFFSVSIGSAEGGdhSAEAVRHRIRMLIAQESPENILSDDDIVESLKNGGVELARRTVAKYREAMNIASSVQRRR--    
120 UniRef50_B2RK26        RNA polymerase sigma-54 fac...   426    1e-118  1  30.9%   3:477   2:485     --LKQTLAQRQQQNLSVQQIQQIKLLELPAIELEERIQKELEANPALEEGAYDEEVAGSA------DGTEDNLMGDDTSDLSLGDYRTEEDIPEYKLREIQDRNSRREEI-PFSAAVPSLNDRLVEQLKFLPLTDRQQQLAPYIIGNIEEDGYLHRDLEEILDDLAFreADKKEVEEVIGLVQSLDPPGICARDLKECLLLQLKRLP-DTTARQTALHILTNHYDDFVSKRFEQLQEGASLSDSEMKEAFELIMQLNPKPANGWGDDAEAtvHPDFIVERMGDDLVVSLTrrDIQPLRVSPVYQEMMQDYQSSAKNrfVKQKVDQAQWFIEALRQRRETLQRTMEAIVRLQDAYFRSGELalKPMILKDVADPTGYDVSTISRVSNSKYVQTDFGIFSLKHFFSDGTVNDKGEEVSTREVKRVLAEAIDSEDKRSPLNDTELAEVLAENGYRLARRTVAKYREQLGYPTARMRKEVV    
121 UniRef50_Q2S3F8        RNA polymerase sigma-54 fac...   425    1e-117  1  33.2%   5:477   6:495     ----LELKQEqqQKLSPQQIQYIKLLQLDTFDLERRIEEELEENPLLEEGLGEEEQREEDEIDATAEEMENELETEDDEEDFDVEDLLNNTDDMYGYNASPGYQGDDEDRDRPMPADQSLPEQLQGQISFLNLDETDEIIADQIIGSIDEDGYLKREIDSILDDILFneIEEEDVQKVLRQVQSLEPAGIAARDLQECLLLQLRRMPEDVDGRDTAIAMLEDEYEAFTKKHFDKLQKRLDVDERELKTAFDLIrrLDPKPGEGEFSEETNYITPDFSVRYVDGEFVITLNGRNAPDLHVSRHYRKMLEKLKAQktEEFLKDKFSSAQWFIDSINQRRHTMYLVMDAIVQLQEDFFRYGEGHLKPMILKDIAEIIDMDISTVSRVVNGKYVQTEWGVYELKYFFSEGLETVDGEEVSNKEVKAELQRIVDAEDKTDPMSDQDLADALEEKGFKIARRTVSKYRKQLSIPVARLRREIV    
122 UniRef50_Q6M9X4        Putative RNA polymerase sig...   425    1e-117  1  29.4%   1:476  13:489     MQQKQGMNLTQRLMMSTHMQQAIHLLQLPILELEPFIEEQVVSNPLLDIieKEGAFIEERTSASEKMEKEITIDDRDLAILNRLDEDYREHFAGSETTPMKRSSEEEkyLENSICADPSLLEKLHQQAIDTFNNQQELAIADILIGYIDANGFLKTPLQEICLL---HNLEESAVKDILREMQEFEPYGIAAASIQESLLIQLRCLHKE---GKLAYRLIKDYYNELLHNHIPLIQKQLKCSFSEIQEAIEkiAKLDLHPGTHFSAQTSQVLIPDVTLRQEGEKLIVDVDRDRAPTLKINRKYLRLLNDSssNETKQFIKRHLFSARWLVRNLQQRYSTIERIAEFLAVNQYEFFTQPDGQLKPLTMKTIADALELHESTIARTVSNKYINSPKGIFSLRSFFTTKYTSEEGEDLSAKTVKEAILEIISGENKLRPFSDEKISEFLKSKGITCARRTVAKYRQALDLGNTQQRKKF-    
123 UniRef50_C3J8N1        RNA polymerase sigma-54 fac...   423    1e-117  1  32.7%   3:476   2:488     --LKQQQEQRQKLAIDVQQIQQIKLLEVSGEELADRIREELATNPALEVVEESEETTPEDNFLDEEPLSNTENEQEGLQDDfpEDYTADDEREDALREPPRPSAGDDDGPSYVQPNepSLSDELHEQLISLTLSDRELTIAEYIIGNLSDDGYLSASLHEISDALLFNeaSDAEIEEMIHRIQQLDPPGIAARDLRESLLLQLRRLPK-DEVHSLALSIIEGYFEDLAAHRYDRIIRGLAITPDRFSEAQRIIRQLNPRPASGYgeAAVARIVPDFTVHLHNGELQLWINDanLPQLGISPAYLAiiRSEAEKTSRAFASSRIAEARQFIDALKRRRKTLLHVVGAIVQAQEDFFRTGdqQLRPLVLRQIAETVALDISSISRITQRKYIQSDYGIYPLKFFFSEGTTGSDGEAVSSRSTKDLLRQLIEKEDKRTPLSDTELGALLSQEGIPIARRTVAKYREQLGIPIARLRREL-    
124 UniRef50_A1TNE5        RNA polymerase, sigma 54 su...   421    1e-116  1  31.0%   3:473   4:463     --LALGARQTQTPHLSPRLQKAVQLLQMPTAEFIQSVMAAVDENPFL----------------------EEDEAAAPAAPGPEEGPAWTAAPGSRSPQAGSGDGLSMLDREPATA---TLQEHLHSQLRLLRLPDRAFLLASLVVEELSDDGYLLASLDSLCRDYgePEATAEELDAALRTVQSLEPAGVGARDLQECLRLQLPAV-ACPLQRALCDAVLARAAEGSGPQAMRQLAARLDVPAHAVREAMERLRHLDPHPGWRHGSQPVQYIMPDVIAHKARGQWTVSLNEAVMPRVRVHRQYQQLLQSPADAPDGPalAAQLAEARWTVRHVQQRFSTVLDVARAILRRQPHFLEYGPIGMRPLALKDIAEELGVHVSTVSRVTNNKYLQTPFGLFELKYFFSRAMTTPAGRDSSPTAIRGLVQEILAADDGQRPLSDVDIARQLERQGIRIARRTVTKYRQQLRIPPAEQR----    
125 UniRef50_C5TQ27        RNA polymerase sigma-54 fac...   420    1e-116  1  33.3%   4:474   3:448     ---SLVLKLKQTQQLNQRLQQSLRILQMSGLELEREVEDWLLDNPLLERPETDEFADSGLNRTVTMP-----------------------------RAGQQLSGDDAEDIWSNIAEEEDFKHYLHAQVCEHPLSQVEAAYVHVLIDFLGEQGYLTDSLEEIIDHTPLemLDEEALQNAQDILQTFDPPGVAAADLTESLMLQLMRLPA-SPARQMAAHLVQSSLQDLGKNRKQNVLRFRKldSETIEAALDMIAELNPYPAYGFAstPTPYIQPDVWVKEGKDGWEVISNEAAWPKLQLNQEYCDLMKSAEEGALG--WKEKINEAKQRIDSLELRKSTVLRLAEYIVKNQEDFFIFGEIGLSPMLMKDAAAELGLAESTISRAANQKYLSCPRGLFALRYFFTQAVNadDGEGFSQGAIKAVLSQLIESEDSSKPYSDETLVKLLKQRGIEIARRTVAKYRESLDIPPAHKRK---    
126 UniRef50_D2LXG7        RNA polymerase, sigma 54 su...   420    1e-116  1  28.3%  14:476  16:432     -------------VMTNELRQGIAMLQCSAMELQDYIHELLLENPLIEIE---------SFENNNWTAITHADESTSAIEHISKDF-------------------------------VDLKQFLQNQITFLDLDKSIKNIALYAAQCVDENGYLLHPPSEIAIELN---VSLTEVTKAIDIIQTLEPAGVGASSLQQCLLIQMRQQKERD---EQAEFILENYFEELANKQLKTIANKENISVLKLQKITDKIQQLNPKPGAIFSNEPCTYVVPDVSVKSTIEGFKLYIHDELLPKLTLNKNYQELMKNS-DTTINKYIQKKYEQYVWIKKCIEQRQKTLFDVASTIIEKQLDFLKGGAVNLRPLTLKTVADHLGIHESTVSRATMNKYIETPMGLYPFKYFFTASVGSNKGQTNSSESVKTHLKQMIDNEDKTKPFSDDKLATMIHeyAIAVSRRTVAKYRDEMNIPGSRKRRRF-    
127 UniRef50_B0S8M7        DNA-directed RNA polymerase...   419    1e-115  1  31.7%   1:476   3:468     LGASLSHRQTQKLVMTQDLRQSIELLSLSTLELSDKIQNELLENPLLDELGVDEKTKMPELFSIDEVKRLEKLNH-----EKSTDVNWQDSYseGPRTYDSEASDRNQKYIESSTRGETLEEHLLNQLRLIKLTKLEFEIGEVLISMIDDKGFITDDLTLVAKEMGYPE---PKLRRVLQVINELDPIGIGAKDMQETLLIQGRILFPENTLLH---QLIGEFLSDLEKVDYKKIAKNLKITEEEILSLARLIKKLEPYPATTYQGRKIDYVVADVVVKEVGNEFNIFINDEWLPKLTIQEEYKELLGQKLPPKEKEYFQTKYSSAQWLIRSIQQRRQTLQRVVSCIIDFQVDFFRGGIGFIKPLTLKEVAEKLGLHESTISRITTNKYIQTTWGIFELKWFFSSGVKSAEGGKESSKKIHEIIRNLVKEEDEQNPLSDQDIVELMEKKGIEIARRTVAKYRKVLRILPSNERKRI-    
128 UniRef50_A6DS74        Putative uncharacterized pr...   419    1e-115  1  28.1%   5:477   7:470     ----QSQTMRQEQTLAPHQLLSLEILSLPVMELQQKINEELALNPTLELDKALGENLAGDPLSESTEMTSEAMNAVDKDESLIGMVQLESYYGDSAFNPDQDKKR--QHYFDSLSCEQDLSSFLLSQIHQGEISDEDIEIANVIIALLNDRGYLNASIEEVA---FNAMCPLKDASRVLELLQTFDPPGIAARDLRECLLIQLK-----NEKGSLIYRLVDKHLEKLEKNKIKEIARSLKISPIEVQDLIEYLQRLNPAPGLAYSNKRPDFISPDIIFELKDDEIEVTSSKDFVPRLRLSENFMNMLEDPkeAETKTYLREKLAESRSLLASLDLRESTLLRISRLVARDQKSFFTGKSSSLQPVTMREISGELELHETTISRAVAGKYLDSPKGIFPLRDFFNHAVKVNEGEEMTAEGIQEIIREIINDEDPEKPISDGKILTQLEEMGINIARRTVAKYREAAGFSAASKRKMIF    
129 UniRef50_Q0EWW0        DNA-directed RNA polymerase...   416    1e-115  1  31.8%   1:475   1:458     MQTKLAHKLGQRLALTPQLTQSLKVLAMNSMELDAYLEESIESNPMLDID-----FNATPTTDAAGEERALEISEQDQWRE-QGDNRWETMY-------ASASRDDYNEREPLWQQEQSLSESLHEQVDRQPMSEAEHRIAHMLIDSLDDDGYFRLGTDAFVREVADetTDAEAVDNVLhvIQQLDPSGLGARDLTECLLLQLDGSQEIDIW---VKRLLLHYSDKLLLPD-DELAAAADCDVETVQLARSRMRRLDPFPGHGLRGEENYYIRPEIVFRRnnNDIEVDIPGTGWRGIRLNEQWKEHEWKGKDKE---FMSQAMKEAKWLLHALDQRSETLMKVALCLAERQRAFLEYGILGLKPLTLQDVAEDVGLHESTISRVTNSKYAETPIGLIELRRFFSAGLPTRGGGTISVYRVQQRVKALIDSEPAGRPISDQAIADRLQAEGIEIARRTVAKYREQLGLPPSSQRRR--    
130 UniRef50_C6VM89        RNA polymerase factor sigma...   414    1e-114  1  26.6%   1:477   3:441     LGPGFRQQQRqkLAMTQRLQQSIQMLQFNVEELRDFLTQKALENPLIDV-----------------------------------DTNWNNNH-ASLNAAKNVTTKADFIERVSTSNQHSLFEYLLDQIHLTMRDTHLRQIVLYLIEYVDVNGYLRIDERQVRQE---TKATPIELLDAITLLQQLDPPGVGARSLQEALMLQTE---NDDHAPNLAYIVLEESFDELVNRQWDLLAKKYQVTLADISSIYDYVRTLTPVPGAAIGQETTGYIFPDLVVTNQGGQLALRTASMAQPVVKFRSRYYQQMGQHDDQEVTEYLKEKKSEYDWIANSLQQREATIFRVGTAIIERQADFFLEKTTDLRPLLLRDVAQQLKVHESTISRSINGKYIQTDFGMFELKRFFTKAVspTGGKIVSADSVQHRIVTLIEQENKEKPLSDQKIVQILNAENVELSRRTVAKYRENLNIPSSSRRKQYL    
131 UniRef50_Q5WDK1        DNA-directed RNA polymerase...   413    1e-114  1  29.2%   1:476   1:440     MEIGLLQRQTTSLVMTQELRQALHLLQYSSVDVIAYLREQALENPLLELHEQSTLSRERELVGTRPIRQPM------------------------------SSDDKQAALQNVAQRGRTLADELYEQLIESplSENDKCELTYLIGNLREDGYLGEALPQL---CADRNITESEGERLLAILQSFEPAGVGARSLGECLALQLKRMPDCHP---LAIDIVLNHLEALAARKWKQLAKQYGVAVQDIQHLYDQLKELDPKPGLRYSKETAIYVQPDVLMAKDegKLLVFMNDDILPAIRVHEEYDHLLKQQV--ETSAYAKQKRQHVEWLKRSLEQRQQTVRRVAEVLASMQADYLLQPSGVLKPLTLNDVAQVLGIHESTVSRATANKYAQTPRGLVELKTLFSGHVSKSDA-QLTNHHVKVWLKEMISVEDKSKPLSDQKLAEQLrdKGVALSRRVVAKYRDELGILPSSKRKRY-    
132 UniRef50_A5WCB6        RNA polymerase, sigma 54 su...   412    1e-113  1  38.2%  41:474 123:578     ----------------------------------------LNENALDDTNKTEGDIEQNqtTTADNDLKAEASNLDTSLGELPIDTEWDDIYTHSPTGLAAPDTQ--GMSDYQGATSVSLQDHIRWQLTFSKLSSVQSLIADYLIDALDDHGFIQIDMAELKDSFDeqKIELEHIQQVIELIQSCEPLGVGARNLAESLQIQLRALDENTPYMRQALRLLDEH-QLLVSNNIKELMSRTGLKNNEISPALELIRTLNAAPGLAFSKAQPDydIPDVIVQLVHNqwKVELNPETLPKLRINQQYASLVKRGDDSPDNVYLRDNLMDARLFIRSIEERNHNLLKVATCIIKMQQDFLLQGATAMKPLILKEVAEEVGLHESTVSRLTTSKSILTPQGLFSLKHFFSSHVSSDQG-DVSSTAISAMIEALIDAEDPKKPMSDSAIKQHLQQQGIDIARRTVAKYREAMNIGSSTQRK---    
133 UniRef50_A6L093        RNA polymerase sigma-54 n=3...   412    1e-113  1  26.9%  14:474  18:489     -------------TLSPQQILVVKLLELPTVELEERIHSEILDNPALEEGKEMPENEDDNTEYVENEDGNTDSNEDFSLGDYSNEDDIPDYKLQEHNRSKEGVAEEIPFSDAV-----SFYEILKDQLQMQELTPEQRDIAEYLIGSLDDDGLLRKNMESIMDELAIYrtTEEELNKILEIIQDFDPAGIGARSLQECLLLQIQRK-ADSPLKQIELDIIGKCCDEFTRKNKERIIQKLGITEEQYNEAVSDLTKLNPRPGSSLGekNMQQIIPDFIVeyEDDTITLSLNNRNVPELRLSRQFTELlqSKASKDALMFLKQKVDAAQGFINAVKQRQHTLLTTMQAIIDIQRPFFLEGDESlkPMILKDVAERSGLDISTISRVSNSKYVQTNYGIYSLKFFFSDGYTTEDGEELSVREIKRILKECVDTEDKEKPYTDDELAETLKTKGYPIARRTVAKYRQQLNIPVARLRR---    
134 UniRef50_D1PTK8        DNA-directed RNA polymerase...   409    1e-112  1  27.2%  19:474  35:515     ------------------MLQ-VKLLEMPLAELEENVLSELDDNPALEERRDDPDDSGRepEDEPYEQKTEREEREEALNNALENLGSDDELPAPAGYTGSQGGSDADYEEIVWGDTRSFYDKLKEQMGVLVLTEEQRSVMEYLIGSLDDDGLLRKSLDTISDELAIydVSEEFIEDVLHRLQAFDPPGIGARSLQECLLLQIERR-QDSKLTRLMREVVEQYYDEFTKKHWGRIAQALQLTHEQADVVHEELRKLNPKPGASLGEtnTQQITPDFLitDEEGHVSFTINRGRIPELKVSPSFSDMVKTYRSSKHQmyAKQKVEKAQGFIEAVRQRRHTLYVTMKAIINWQKKFFQDGDEalKPMILKDIAEKTGLDISTISRVSNIKYAQTPWGTFPLRFFFTDGYVTEDGEELSTRKIKMVLKELVRKENKKMPFSDEALARELKKKGYPIARRTVAKYREQLGLPVARLRK---    
135 UniRef50_A8UBI0        RNA polymerase sigma-54 fac...   409    1e-112  1  27.6%   2:476   4:448     -EQNYTQLQKQQLAMTPQLQQSIQMLQYNRKDLVEFLKQKSLENPFI-------SISVKSTPRNQGTSTQKYNSNQSRTDQTSNGSVWDTV---------------------ATTPAASLYATVIDQIHLSFRETALRDLIIWLAQYLDNNGYLTVSLED---ACTLTQADPLQLLDALTLLQQLEPAGVGARNLQECLMLQTERKE---EAPNLAYLILEEEFEAFANRKWECIAKRYAISLSEVQEVSDFIKTLTPHPGAIFSSTPTQYIRPDLSVKVTDeeIVVSSVKSGLPVIIFQKEYYEELKVLKDKEVSTFLTEKQSEYEWLKRTLIQREDTILKIGIAIVNAQKAFFLSEDHPIQSLTLKTIAEELSIHESTVSRAINGKYLTTEFGLFELKHFFTNAlsEDHDGAISSNQIKKEIQSLIQNEDTKKPLSDQKIVDILQKDGIKISRRTVTKYREALFIASSPKRKRF-    
136 UniRef50_Q3J1U1        Sigma-54 factor (RpoN2) n=4...   409    1e-112  1  28.0%   1:475   3:436     MTPGMQlaQRQSLVVTAQLQQAICLLQMPNAELSSFIESQSEENPFIELRLPPAPV-------------------------------------PSAPLGKTAPEDWDRVAGLAADPGPSLYVHVAAEIARLGFDAPQAAAAQVFLDALEPWGWLGRPMEELAFRAG---LSLEAAEALLARLQKIEPAGLFARTLAECLQLQAEEQGLLTPLFAAVLAHLPLLAAADLKG----LCRACGCGMEDLKAVLRSLRGLNPKPGALFDAAPPPQRPPDLVVSRGAEGWRVDLNRSTLPSVVVRSDAAEGFART----AAPYVGERLSVAKWLARAVEHRNQTTLKIGAEVVRRQRGFLEEGLARMAPMTLREVADAVGVHESTVSRVSSGLMIATPQGTFPLKSFFTAALAAREGDTasAAAVRHRVRQLVQAESPDDPLSDDAIAKIISDEGVTLARRTVAKYREQLNIPSSVQRRR--    
137 UniRef50_B0VJD8        RNA polymerase sigma-54 fac...   408    1e-112  1  28.0%   1:475   4:485     MEQYLSLKQKQELALKPKMLQSLKMLALPILELESYIKQELVNNPLLEldIDESNFEQSTPESSTPIEESDMSENheAEELTEILDTWNEYHSSY---EGWSSDSETDHTEALIRYEENGKEKFLEQLFPLELPENEIDFITDIVDSCDSYGFLPKGF-NIVNLAKKYLITAERAEGLHNIILSLSPKGISARNITECLMAQLTEEQKQN---RILVGLVSEHFENLIHRRYQKIASAYGVSEETILLAKEQISKLDPKPGLRILSTSAVYVFPDVTMKLIDGKYEIIINDHITPNIIISPRYRKMINRGydKETMQYVRERINSAKFLIKSIYMRMRTLERVSLSIINHQYDFFYLGTGQMKPLTYAVIARDLGVNESTISRVVKHKYAETPYGIYAFKDFFTSTAGFDDdqSVSRQKVKTHLIRLIETEDKKKPYSDQELVELLKAEGLNISRRIITKYRDELGILNSHLRRQ--    
138 UniRef50_C9LBN7        RNA polymerase sigma-54 fac...   408    1e-112  1  25.9%   3:476   1:438     --MELKQELEIQARVSQEMVQAVSILQMTAWDLKEYVQEAMLENPVIELEETTRKQDNEevRKLEWMENGDYQNKVYYQQELEESNEF------------------------WEENEPDLREYLLEQMAFMDLDKKAASIIRYMIQSLDERGYLLENEEEIADILGR---SLEEIQRARQILCTMEPLGVGALNLQECLLIQLRKKGCTS----LACEIVENYIEEFGKNQLSKIVKKTGRDLKEIAQACEQIKEQNPKPAGYfaRPYKNYIIPDVIVVKLKDYFEILVNDYDSPEIFISPFYRQMMRE-QGEETGKYIKEKIRQAEWLKSCIEQRNRTLLQLTEEILRSQTEFFQRGKNYLKPMTQKEAAEKLQVHPSTISRAVQGKYLQCTWGMFPLSFFFSSGTDKG------AEYIKECLKRIIENEDKKNPYSDRVLAEKLQEMDIDISRRTIAKYRNSMHISEALGRKEY-    
139 UniRef50_Q11E47        RNA polymerase, sigma 54 su...   407    1e-112  1  29.2%   4:476   6:450     ---NLGVGVRQSLTISREMVQAVEILQYDREELAAFLREQVEKNPLLRMKDRAEAAPGQGLGERWRRDSGD-------------------------RAFATGAAGDAPDIASSIGEEVTLSAHLHLQLALVKCTPEVRVRAGQVIDSLEEDGYLRQDPVKLAELLG---CSQDEMDAAIALVQTFDPAGVCARNLAECLQLQLREQGELRP----AMAALLTHTDLIVKGEVKRLAAICGVSESEVRVMLRKLRSLDPAPGRALDCTPVCPALPDVLVDLTpgALKVELNPDLIPKLLLDRSyaEVSSQIREKDEKSYLDECMRSGALLMRNLDRRFTTMLRICREIVRRQEAYFRHGLSHLRPLTQGEIAQELGIHESTVSRATANKYILCSRGLLPVKFFFSEagTGTDGLGHASETIRRRIREVVDGETPEKILSDDVIAALLHGEGIDIARRTVAKYRSQLKIPSSADRRRL-    
140 UniRef50_B0P364        Putative uncharacterized pr...   407    1e-112  1  27.9%   1:476   1:432     MNFSPKTTLVQTQTLSQTQLQSLKILSLDNFELNNFLQNEYIENPLLDYNENSNLPS------------------------------WNQYVSYS-----SAKEDEDIYKEIPDFSENGIKEFLLDQLNQRNFSDLQWTAMQTMIDCLDDCGYFKLSLKDFSQWFG---IDISTVKYCLDILSSLEPLGIFSKDLPHCLLRQLEARQELTPELN---QIIRYHLDDIAAGKINTITQKLSMSTQDVRKCIAKIRELNPRPISGFLTNSTDYIVPDILIDYQDSSWIIRLNDQWIGNYSLCDYYLNMMHTSQSPELKEYFRKKYNRVQLIMHSIEQRRETILKITSAVLERQKDYF-TGNSTLKPMTLADIASDISMHTSTISRGIKNKYLQYPFGVVYLKDLFTSSAGKKDNN--SPITVKKQLKAIIASENPNKPYSDSTLSNLLKQKGIKISRRTVAKYREEIGIKSTYNRKIY-    
141 UniRef50_B1HSZ7        RNA polymerase sigma-54 fac...   407    1e-112  1  28.1%   1:474   1:423     MQLSIKQTQELQIVMSAQLRQAIELLQYSTQELEQYIREQELVNPLIELSEP------------------------TFKEHLQISKTCGRHYNNWHLSTK---------------CEKNIRDELFQQVRLTFDNEKDIQLLKHIIYHLDDNGYYEQSIQSSYNDL--------EIEKGIHLLQTIGPLGIGARNLKECLLLQTIYGPNS---PAHADTIISNYLEELAHNNWKKISKELDISLNDLQIIYLFIQSLQPKLSSLFYQELVHTTIPDIIVDIVDGGITFSLNDYYLPKVSIHADYFPYIK--AHSSEKSYFKKHLADYHWLVNSIEQRRNTMINIMKALIEKQRKFFLDGLDAIQPLTLREIADQIDVHESTVSRITTNKYVQTAFGTFELKELFSSKLSTANGHSVSQIKVKSLLSDYIKSENKAKPFSDQKIAEYFNSagIEISRRTIAKYREDMSIPSSARRK---    
142 UniRef50_D1W3B9        RNA polymerase sigma-54 fac...   406    1e-111  1  26.7%  19:475  83:556     ------------------MLQ-VKLLEMPLTELEESVNAELDDNPALEKAEGDeeTDGRDEREEDFAERTEREEREEALDKALENIGRDDEMPDAYGAYHPQDNAD--YEEIVYGDTKSFYDKLKEQMMMENLTDTQKDVMEYLIGSLDDDGYLRKDVESISDELAIydVTPTQIEEVLYILQWFDPAGIGARSLQECLLLQVERRP-ESKLKDILQQVVTRQFDAFTKKHWDKIQANLKLSDLQLRAVQEEIRKLNPKPGASMGEtnVQQITPDFIivDDNNNISFTLNQGKIPQLTISPSFSDMVDTYKnkEALLYAKQKVDKAQGFIDAIKQRRHTLYITMKAIIDWQRKFFIDgeSDLKPMILKDIADKTELDISTISRVSNIKYAQTKWGTFPLRFFFTDSYTTEDGEELSTRKIKLALKEIIDHEDKRKPFSDEALAKELKKMGYPVARRTVAKYREQLGLSVARLRKE--    
143 UniRef50_A7B1W8        Putative uncharacterized pr...   405    1e-111  1  26.5%   3:474   1:439     --MGLELKVEQKQRVYQKQIEQARILQMNAQEIAVYIQEVALENPLIEVEELAEAPLEELVRE-------DMRKSDETGVTASEDTDW------------SYAGGHQLLEDWWTLQEESLVDIIHQQLLTMPIGEKEKKIVEKLAGSLDSRGYLEISVKKLAEYI---PCSVRELRSALEILKSLEPAGIGAADLKECLILQLKRQKDS----RLAITLVKNYLEDLSKHKISAIAKELGEEEAAVRDAFSRIRTLNPKPGRIYGRNTGGYVIPDIIVSKEHGKYIAELNEAVYRELRLNEFYVKL-RDSKEAEVREYIMQKQAQAEWLRACIEQRSHTLQRIADILVDFQRMFLDSGKD-MKPIRQKDVAQIMEVNESTISRAVKGKYLQCGWGVYALSDFMPKGT-----EEVSSDSVKLMLRNFIQSEDKKKPLSDQKLAQKLGEEGIQISRRTVAKYRMQMNILDAAGRR---    
144 UniRef50_B3ESG5        Putative uncharacterized pr...   404    1e-111  1  29.5%   3:476   2:479     --QKLRLTQKLTQKLTPQQIQLVKLLQIPSIDINARIQQELAENPVLEPANDNVEY-LQEAEDNSAIDTMTVGYIDELPQKNYL--TYRDYEAEERWLRKEASVPNRYSLQEQLLEQL----------EMLRLDEGQHKIGEYLIGSLETDGYIRRDLAALANDLLLTqtNETEVETILKKIQTFDPPGIGARSLQECLLIQLNRQP-SKPVRNMAIQILNQTFELFTKKHYSQIIKKLAIEDQElkEALELIAKLNPKPGGTLGSdqNQILYPDFLVTKHNQQLEVRLNAYNTPELRLSRSYIHILETSQkqAASSFVKQKAESAKWFIEALNQRKKTLLRTMQAIVQLQYDFfeEDESKLKPMILKDVAKIIEMDISTVSRIVNNKSVQTQFGIYPLKFFFTEAISTTMGEDVSSKAVKQALLELIQQESKQQPYADEQLTAMLVDKGYHIARRTVAKYREQLNMPVARLRKEL-    
145 UniRef50_A3V230        Sigma-54 factor (RpoN2) n=1...   401    1e-110  1  29.9%   1:475   1:437     MTPNAHLAQKQSLVFTPQLQQAIKLLLFNNLELSNYVEKIAEENPFVEVELPEMRVPAPRV-----------------------------------MASSQRDPSFDPISLLADRSTQGFAAQLFAQVDDILTEQSERAIGYAIASHVDPSGWLSIPTPLLADNLG---VDDACVCTVLRKLQSAEPAGLFARNLAECLVLQIVADDPDRS----ALLIIMQNLVLVERGAIPELRRKTGCSAEEVKRLLRRLREFNPKPGLALSDDVMMSArpDILAArqDGEWYVELNGATLPILKVDEVEGRRVRkvKHDSDQAYVRDTLGNARWLKRAIAQRNETSIKVAAEIVRFQKAFLEHGMQHMRPLKLKTVADAVGLHESTISRVTSSLMMQTPQGSFPLKTFFSTAIDLDgdEGVSARMVREKIRNLIGAENPSGPLSDEFIAQSLQCEGLSIARRTIAKYRKLDKIPSSSQRRR--    
146 UniRef50_C4GJ01        Putative uncharacterized pr...   401    1e-110  1  32.5%   2:475   3:453     -STNIQLKLRQTQQLSQNMQQSLRVLQMSGIEIEREVEDWLADNPLLDRVEQPEKTYEPPQTTADIAKRGVSL------------------------------DDDDSSAWENLAQEETLNAYLHKQVAEHPLTPSEAARVHILIDFLDDKGYLTESIEEIIEHTPLemLEEDDMEIALEHLRAFDPAGIATPDLTQSLLYQLDRLPL-SEARRCAAQIITRHLDQITQNTPKNLNRFSKlsETVLRDALEIITNLRPYPSYGFASEEpqYVRPDVFVQKNdgEWYAISNEESLPQIKINTEIIEALQEESN--LDPIWREKINGAKQKIDMLQQRKSTILRVAEYILAHQQDFFYFGEIGLVPMLLKDCAKHLELAESTISRAVSNKYLACPQGLFALRYFFSQNAasETGNAISANAIKSVIAQIVEHEDKTKPHSDCSLHRLLQQQGINIARRTVAKYREQLGIPTVQQRRE--    
147 UniRef50_A4SER6        RNA polymerase, sigma 54 su...   399    1e-109  1  32.2%   6:477   5:447     -----RLQQKQKAQLSTQQIISSQLLQLPLANLEQRIYEELQENPLLEAVEAEKENSLDERERSSASSGGQSSGEH----------------------------------FFQAVQFDSFHEILLKQLALqnIERGEVEVAIEILGNLDSDGYFVEDPEVIVDSlaGLEVDGDEVEAIRLKILHLDPPGVAALDLRERLLVQLhrGKASVRVRGVAEAILIHHFDDFIHRRFERLVKKLPHQPEEIDAAINAIVALDPHPGI-FQDEGGHYISPDFLVSFDNGELTASLNDRSALSVKVSDRYRDIlkRQGSKEDLQFIRRNMQRANDFASALESRRQTLLKVIESLMKHQYAFFADGPAFLAPLGMKTIAADTGLDISTISRAANSKYVQTRFGVFELKYFFTGAIQTDDGEDVSSKVIKQHLADMIEAEEPSKPLSDDRLTAMLSEQGFQIARRTVAKYREQMQIPVARLRKKIF    
148 UniRef50_C2ME31        RNA polymerase sigma-54 fac...   399    1e-109  1  30.0%  14:477  15:491     -------------TLTARQIQQIQLLELPVTELEQRISAEIERNPALEEAYTARDDSNESNATNEQVDSSLSQSDQDRLEARNEFGNDDEIPAYRLRMIAEREQQREEIP--FAAHGLSLTDYLDNQLSTLELTERQQLLVPYIVGNLREDGYLDRSLPLIAQDLLLKeaSEQELAELLQIIQSLDPPGVGARTLQECLLLQLHRMEQSETVVN-AEKIVSSYFDDFAYKRFERLTKR-GFDQKQLEAVSSLIHQLSPKPGNGFDSSAETlvTPDFIITEHEGELTLTLTdrEIPALTVSPSYKQMIADYRdkETIQYTRDRVKDAEWFISALQQRYDTLRTTMTIIMTLQRDFFLSGDidLRPMILKDVAELARLDISTISRVSNSKYVQCQWGIYPVKFFFSESMQAKDGSDVSTKVIKDCLKQIIDGEDPRQPLTDDQLTEELSRQGYDIARRTTAKYRQQLGLPTARLRRKLT    
149 UniRef50_Q01194        RNA polymerase sigma-54 fac...   398    1e-109  1  28.4%   1:475   1:429     MDMMQFQRQTTQLAMTQRMQESLRILQMSNADLADYLTAQALENPCLEVRVPEGASVAPAL-----------------------------------PSRGIQAGLDRDAFATVEGQPPSLLAHVEAQIDLAFFDPGDRRTALAFAEALEPSGWLGQPV---SEVAAAAEVEEEEALVILERLQALEPAGLFARSLAECLALQLEDLGLLTWELRT----MLDHLPLLAEGRIADLARRCDCEPEHIRENLALIRSLSPKPGEAFAADRTPIQPPDVRVLRGPEGWEVELTRAQLPRIRVSE-----AGDTGDRQADAWLARARSQARWLERAVERRQATLLRTAVCLVRHQADFLDQGPRALRPLSMEEVALELDLHPSTISRATATRLIETPRGLIPLRAFFSRSVSSDGPEaqSQDALMALVREIIAREDRTKPFSDDAIVKQAKLAGAVLARRTVTKYRETLGIPSSYDRKR--    
150 UniRef50_B2UL79        RNA polymerase, sigma 54 su...   396    1e-109  1  30.2%   2:474   3:463     -EVSLQHGMTRQMAVSQSMQTGMQILQASALELRQIIRQALETNPMLEELPDASPEALEDGPDGDA--------------WNEREDGWNEFTAEGRLSGDAAARRDFMYES--VVAPESLKTHLMDQAQHSALTGRARDALFLLIDALDERGFLTESPQELEEQ---GCFSMRDMEEALAALREMDPPGVGAANLRDSLLIQLEQRGLK---RSLAFRLVKRCWRELAAHKYEEAARLLDVEPGAVAAALEVIRSLTPDPGGAYAPGGNPHLLPDVIVEEGpgVLEVILTSEYLPRLSMNERYMELMAesGSRELRQYLRRAFREGQELLRALDMRQETVLRLARVIVRRQEDFFRSGPSRLKAMGMEEVAEEMGVHVSTVSRACRDKYLLCRWGMKELRSFFSAGVPSEGggAVAAGAVQELMRRLIAEEDSSKPLSDAGLAAALREKGVNIARRTVAKYREQMKILPASLRR---    
151 UniRef50_C8WN98        RNA polymerase, sigma 54 su...   396    1e-108  1  29.7%   1:475  11:474     MEARSNVSVRTKQHFAPTAIQGLEVLSLPVARLDAYVRDLVERNPLLDFDYDHGSLSFEELPDEEDGDAAADAETAAEG------------FDARPPSAIAWDARGFDLARLRdsQTETLHSHVRMQLTGVRVGEEDRALLDALIENIDDDGYFSGSMHALCAEAGR---SIEDGQRLLELVQQLSPRGVGARDLAECLALQI---DDGLPYADVIRDMLRTGLDDLAENRTTKLMRVYHLTIDDLAAIREVICTLDPRPGSSFSQRktVYVIPDITIRRDGTAFSVQVTGELSETLVLNGSYDRMEQRGgdDEAREWLHEKRAEADAALANIDQRRQTLHRFGVYLAEVQYDFFMGGEARMRPLTMQQAADALGVHVSTISRTVQDKYALTPWGVFPLKHFFSSSvaEERRHALSSLAIKDRIKDLVAQEDRRTPLSDATITAILNGEGVDIKRRTVAKYREALGIGRQSQRRR--    
152 UniRef50_D1CE57        RNA polymerase, sigma 54 su...   394    1e-108  1  28.1%   1:473   3:478     MQMSQEQNQAQEMTisPSLIEANYILSLSLPELRQTILNELSQNPALELVDHegEVMVGGKCENCSREDSKTDHTDTVNEDL--DSLYYESYSATSRSLVS-DDEDDFDPMSIVASEQDFHESLRSDLH-SILPEEDYEIADYLIESLDENGYLRQPLDAIARELGR---DVQRVEWVLQRLQEIAPAGVGARNLQECLLLQLRYLEQEGEipEYVRAILENYIEELGSHKYGYIARKLKTSPEKVAEARQFIksLDPAVGRTwsPSRSTYISPDVIIFEREGKLEVEVVEGRQFELRLSPAYQQIAKDLesENERTHIKEYISRTKMFISNVNQRRKTIYKIASALVELQEDFIRYGVRHLKPLTRAMLADYIGVHESTVSRATAGKYVMLprKVIPFSDFFTASLS-----------IKDVIKEIIMSEDKA--LTDRQICDKLRERGIRVARRTVAKYRAELGILPSTLR----    
153 UniRef50_C9LEP5        RNA polymerase sigma-54 fac...   394    1e-108  1  29.5%  15:475  17:491     --------------LSAVQVAMARLLELPVMDLEQRVRNELEDNAALEEvdKNEEDMAAETTEADDNESETAEDEPHADDETADYLTEDDIPDYLLRQRNEAEEREVQLAATNNA-----YDELYRQIGEHDLDEQQRRIMEYLIGSLDNDGYLRKDLRTIGDELAIydVSEEELERLLHLLQRFEPRGIGARDLQECLRVQLESPEFKSSFKALAIAIVDRCFKDFTYHHWNTIKVRLKTDDESLQQAAQLIRRLNPKPGSALNETtaPTAIPDFYVheDDGSISVRLNNGDVPELRVSKAFKDTVREFGGHKDLnyARKKVGDAQLFLELINRRRKTLMGVMRGIVERQRDFFLNDDDelVPMTLRDVAEKAGVDISTVSRVTGSKYVQTQRGLYPLKFFFSSQFTSGEGEELSSRQAKAALREAIAAEDKRHPLADEALTIVMKEKGFPISRRTVAKYREQLGIPKSGLRKQ--    
154 UniRef50_C0QWG2        RNA polymerase, sigma 54 su...   393    1e-108  1  27.3%   2:473   9:434     -NTSIRTAIKNDLRLNYQTRVWLDVIALPAIELKEKIEKAMEENPFLEY----------------------------------------DFNDNYSKPSSAGSDINSIIENTVENNKESLFSHLKSQIDITFNDKKEIELAEQICSFINEDGYLTIESDEISNILN---ADIKQIEKIISIIKTFDPYGVGAKNINECLSIQLKMKKKekEIYDTAINIVENYLDELSKKNYDKIALNLNIEVNTVLKALKLIQTLEPYPAREYDTSSVKYIVPELFIFKENDNWFVKTDETFIPHLKISKKYIKLLDREESKDSINFLKEKKKEAESLINASNDRKKTLLKIGEALLKFQINFFEYGKEFMKPLTLKDMSLEVNLSESTISRIANGKYLNTVWGTFSIKYFFSRAVN----GGLGSRGVKEIIKRII--ENSPAKLSDEKIRLILKSEGIDISRRTVAKYRKSMNIFSSRNR----    
155 UniRef50_B0NX39        Putative uncharacterized pr...   385    1e-105  1  25.7%   1:474   1:428     MSYEMKLEQGLSQQLNQFQVQSLKILSFDNYELEKFLQDEYAENPLMEHKESG-----------------------------------KEFFTLHGNAGGYQDIEQSDIEDKKIEDPEAFF---MEQLNAKDYTKKEWNVMKYMAQCLEESGLLLVSTKEISHKLG---IEEKDCERLLDHLKQLEPAGVFAESVSECLLLQLEREGILNDDL---RYIVENHLEDIAMGHLSTVSRALDIKTSQVRKYIFKIQELNPRPLSGYTGGTDQYIVPDILMEKDGEELKIRLNDDWIGDYSINDYYVKMMEQAEDSELKEYFRKKYERCRFIITSIEQRRETMLKISKAILDRQREYFMK-HKQLKPMTMQNIADDIEMHVSTVSRAVKGKYIQYPGGTIGMRDIFNN-TQTFGDQDSTTEEIKEEIRRLVKEEDKKKPLSDSKIVSLLEQNNMKISRRTVAKYRAQLGIAGTTQRK---    
156 UniRef50_C2ECN0        RNA polymerase factor sigma...   384    1e-105  1  27.9%  13:475  29:448     ------------LAMTQQMQQSIRILKYGSEDLHNFLSNVELENPFMIVNVSHSYVTGGLDHQNEHDIAEFAVEKKA----------------------------------------QSLYDYLMDQVKLTMRKTPIRDMVVYFISQLDQNGYLKADLEKLSKEKGIDKV---LMLDALTLLQQLDPPGTGARNLQECLILQVQ---YDSSAPLNAEKILKEDFEDFTNRKWSKIAKKHCISIGDVQKILDYVQTLSPAPGAIYDQSEVGYIEPDLVIEKkdGSLEVKLTKESNPEIRFKKEYYESLKNSSDKHVLDYLKEKRNEFEKIQEDVLMRGNTLLRLGRLIVERQHDFFTESNRPLKPFLLRDAAQKLQLHESTISRAVSGKYLLYEGKVMELKEFFSRAVsgENGENVSADEIQQKIRLIVEKEDKKNPLSDQKIVDKMKEEGLKVSRRTLAKYRERLGIPASSFRKR--    
157 UniRef50_C9RQK6        RNA polymerase, sigma 54 su...   384    1e-105  1  29.7%   1:475   1:543     MNLGMQAnqTQEQTLSPALLQSVKMLQKTSQELETAIKEEVEVNPLLEvvDKDPEELDPRADSDDLPDDIEDMARGSLDDTADVDsnWDSYLGDGTSYdsGGKDPDEDWDRPIKDVGKSLQEQLEDQLRLWNGTRElrKLVQYLINSINDDGFLcrDNESEAMIVQSDDKYIDEIERVlhVLQSFKPSGIGARDQRECFLIQAYAIPNF---PSLAIRILEEEYENLLQLRYAKIAKALNVSADEVKTAVASLSRLRPHPGFQLSHSYSHIINADLKVVEKKGNYEVVCFKTKMQklRINQTYKAILTdsASKQDKEYVKAQLAKATDLIKAVDNRFSTIELVMRAIVKRQRGFFENGPAFLKPMILQDVADDVHLAVSTVQRATDQKYVETPYGMYELKQFFTSGvsAPDAEEVGSAQIIDAIKTLIDEEDKSSPLSDQDISDELLKQGIKVARRTVAKYReeLKILPKNQRKR--    
158 UniRef50_UPI000169A703 RNA polymerase sigma-54 fac...   382    1e-104  1  79.8%   1:351   1:351     MKQGLQLKFSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDLHEEIDAKETVDSESLDTREALEQKDMPEELPLDATWDEIYTAGTPSGMGNDYSDDELPVYQGETTQTLQDYLMWQVDLTPFTETDAAIATSIVDAVDDTGYLTVPLEDILESMGDENVALDEVEAVLKRIQHFDPIGVAARNLRECLLVQLSQYAKDTPYLAEARLIVSEYLDLLGNHDFRMMIRLSRLKEDTLKEAIALIQSLDPRPGQSINTGESEYVIPDVLVRKEKGIWTVELNADSIPRLKVNQQYAAMGNSVRNDSDGQFIRSNLQEAKWLIKSLESRNETLLKVARCIVEQQ------------------------------------------------------------------------------------------------------------------------------    
159 UniRef50_B2V793        RNA polymerase, sigma 54 su...   382    1e-104  1  29.9%   1:475   1:437     MKQNLGLKLQHKLNLTLSLKHQLNIMVMPKQELLQEIIHELEENPFLE-------------------------------EEIHINNDYQEKLTDLSVSYSE--DEEELNPLNRLTYKPSLLKTLEIQIDL-EFDGKEKEIALDIIDNLDEKGY--ASQESLNEIASKYNVDIEAVEKIRKKLMKLEPTGLGAKSLTEFLITEYREKFGRDSI---AEQIIQEDLNKIKDKEY--LLKKYQIDEEALEEIISNIKALRPYPLYGYEDFEAHYVEPDIFIYETNDkfEIVINEQDLPKLNLTNQYKKILNRKdnEETKKFLYEKLQKAIGLIRGIEQRRENLKNLVESLVNQQKDFLLYGKEHLKPLTLKDVSQKIGLHESTISRIVSNKFAQTPIGVLPLKAFFSNKVSKESGN-ISSDRVKYLIQNLIENEDPKKPLSDNDIVNLLKKEGIHIARRTVTKYREELNIPDSRKRKK--    
160 UniRef50_C6JNV9        RNA polymerase sigma-54 fac...   381    1e-104  1  26.1%   1:475  16:426     LDFTLKLKQEMKLSLTQEMKISMNILQMSSSNLKDFIEKEALKNPMLEV-------------------------------------------TYSTPSSKYNSDEETTSPFDFIIEEKTLIDFLEEQLGYLKISPKIKSICEYVINNLDDRGYLSISKLEIKKAL---KISTAQLKEAMDIIYTLEPAGIGAENLKESLKIQLITKDIID---EKLFTLIDDYLEELGDRKYSLISEKLHVSVEQIEDYLDIIKSLEPIPARGYFVGntNYVVPEAKIEIVDDELTVTLNEEAIPKIKINSSYKSTNSLSD--------KNNMYTAINLIKSIEKRYITLERVLNQLIVKQKNFFFRGKDFLQTLTLKDIAKELNLHESTISRAIRDKFIETPQGIIAIKSLFI--LNSECLE------IKKTIEELIKSENKSSPLSDEKISLYFKNKGCSIARRTIAKYREELGIPSTRERKR--    
161 UniRef50_B5J6Z7        RNA polymerase sigma-54 fac...   378    1e-103  1  29.7%   1:475   4:440     ISISTNISQNQSLVFTPQLQQAIKLLLLNNIELSSYAESIAEENPFLEIDLPEVRMPASQGANV-----------------------------------AQKNSEFDPISLLPDKAGESFGARLFAQVDDTLKDQAERAIGYALASHLDPTGWLTTPLSLLAQNLN---VEEKYVAAVLSKLQRAEPTGLFARDLSECLSLQI----PTTDLDHTSMGIIIANLALLERGLLNEMRRKVGCSADELRYFLRRLRGLNPKPGLALSEGDQAPIrpDLLTAKgnGEWFVKLNGSTLPIIKVDEAAGQRVRklKLEIDQIYVRENLGNARWLKRAIAQRNETSIKVAAEIVRIQLPFLEHGIKHMRPLKLKTIAEAVGLHESTISRVTSALMIQTPQGTLPLKTFFSNAIenGSDEGASARMVREKVRTLIGQEVPIKPLSDEFIMQKLNSEGLSIARRTIAKYRKLDKIPSSCQRRR--    
162 UniRef50_C1QAL1        RNA polymerase, sigma 54 su...   378    1e-103  1  27.1%   2:473  10:436     -NTSIRTAIKNDLRLNYQTRLWLDTISSSAVELKEKIEKAMEDNPFLEYD-----------------------------------------IKDKYTSKSSSSDIDSIIENTAANGKESLFSHLKSQIEISFKSKKEMELAEQICSFINHDGYLKITSGEMSNILN---ASVSEIEKIVSVIKTFDPYGVAAKDINECLSIQLKMKKKEdfLYDTAIDIVENYLDKLSKKDYDYIASSIGVEKDTVIKALKLIQTLEPYPAREYDTSAVKYIVPELFILKENGIWIVKTDETFIPPLKISKKYIKLLDREKSKDSINFLKEKKKEAESLINAANERKKSLLKIGEALLKFQLDFFEYGKEFIKPLTLKDMSLEVNLSESTVSRIANGKYLNTVWGTFSIKYFFSRAIN----GGLGSRGVKEIIKRII--ENSQAKLSDEKIRLILKSEGIDISRRTIAKYRKSMNIFSSRNR----    
163 UniRef50_Q5FPW5        RNA polymerase sigma-54 fac...   378    1e-103  1  32.3%   3:476   4:434     --PGLIQRQSQSLVMTPQLRQAIALLQYTQTDLAQHLRQVCETNPLLILEPGD-----------------------TVPEAVPASEDFHDDDPDRFTTASDRPE--------AAAPPPSDRDELILQIR-HSIPPEEQHAAFHLLDSLDETGRLPVSVTDLAAELGM---DAPKLEAIRQTLMHLEPAGLFARSLEECLAAQLRVRNRLDP----AMQTLLDNLDLLARRDWRRLREKCALDQDDLLDMLAEIQALDPRPGLSLPPPAPPIEP-DLIVRPNGTGFRLTLNTRLLPAVRLDDTLRAQI--DGHTEAGRMLLAYAGEATALIRALHSRKQSLLNVGRAIVQHQAAFLRDGPTALRPLTMREIAERTELHESTISRIVSSKYIDTPRGTVPLKLFFSTALASEDGTTQSAHAIQHRLQALVAAE-GDSVLSDDALTGLLQKEGFSIQRRTVAKYREGLGIAKSSQRKRL-    
164 UniRef50_B4S818        RNA polymerase, sigma 54 su...   377    1e-103  1  29.5%   3:477   2:489     --PDFKLQQSQRAQLSAQQILSSQLLQLPLLNLEQRIYDELQENPLLELIEEKNESVDETGEQSGDDGDddSVDRFEARDEKRPEKNEQPKESQEGVLHFTVDTTPKENF-IQAIQQDSFEERMLRDLSLReiGSTELLIASEILGNLDDDGYLQDGLDIVADGLLTndVEPRDIQRVLHIIQRMDPPGIAVASLRERLLVQLELNQAASGSGgiAKKLLDSYFDDFLNNRYEKIIKRMQIRPEQLEAAIKEIAALDPHPFVVY-QDTGDYIMPDFIVTYENGRLTAALNDRSNLSVQVSDAYRDVLKNRkpRGDKQFVRQKLNRAKEFASAIEQRRHTLLSVIDALMQFQYEFFVSGPSMLVPLGMKDVAEKSGFDLSTISRAVNGKYVQTRFGTFELKYFFSGGTTTDEGEELSTKIVKQYLQEMVSAEDSKKPLSDDRLAQMLEEKGIRIARRTVAKYREQMQIPVARLRKKIF    
165 UniRef50_C8PMB8        RNA polymerase sigma-54 fac...   374    1e-102  1  27.3%   1:473   4:498     MGQTLGQRLEQR--MSQSQIQSLDVLAMPTLELRERIAEELVENPALELIRSSGKPAVPEAERTPQKERNVP--------------YYRDDRTPSAVSLEASDAFQTFLENIPAPQRQSLQSHLLEQLFVHKLDPLTTSFAERIIGNLTTDGFYVVPLNELFkeLSAKSADKdkISHALSIVRRLDPIGCATQDFKQSLLVQAKILFHddPVYAYTIDILTNHFAYLEKARPYSLVRayKLTQENAEDILSLIASLNPFPGRALAADVteYIIPTAFIERNGQEFTVRINNLEIPLLTVSPEFQSLISHTKDAAAKTYIKEQMQKAKAFIGSLNQREKTIVAVLGKIVAVQEAFFLTGDkrLVPLTQQQIAKELDIHESTVSRTVAGKYVQCQWGTFEIQYFFTNSVAVQPPPGSSseGVKDCIKELleHAAKDAKLSDQKISDLLQArgISVARRTVAKYRKELDIGSSYSR----    
166 UniRef50_C3WCT3        RNA polymerase sigma-54 fac...   374    1e-102  1  26.5%   1:475   1:413     MDFSLKLKQETKLILTQEMKTSMNILQMSSSQLKEYLEKEAVTNPAIEIT----------------------------------------YNNYTYKSYNPSSSEDNFSPLDLVSEEETLFDYLEEQLGYLKISSKIKNICLFIVNNLDARGYLATPKLEIKKLLN---INNQQLKEAFEIIYTLDPIGVGAENLKDCLKIQLRSKNIID---ETLFSLIDNYLEEIASQNFSLIEEELNITKEDILDYLDLIRTLSPIPARGYvsTSNNYIVPEAKIEIKDNKLTFKINEELIPKININSSYSDNPSANKNS---------IANAINIMKCLEKRYQTLNGILELLIIKQKDFFFKGENFLHSLILKDIANELNLHESTISRAIKDKYLDTPQGIISMKSLFVI--------DSSTIIIKKLIEEFITEENKKNPFSDEKLSLLLKEKGYSVARRTVAKYREELGFGSTRERKK--    
167 UniRef50_D2RMY8        RNA polymerase, sigma 54 su...   373    1e-101  1  28.2%   1:475   1:444     MGmkLILAPQQKQQLNLHLVQQMKLLQLGALELEQYVREAVEANPLLEFPGEAEGPAWQETAQEV------------------------------YRRKRTRDQEDEPLPDPVAnqEKTLQQVVEEQLGCLRLSGVDRSLACYMAGTLDSRGWWTESVEETARAFG---VTEDRVLQVLQQIQQLEPAGIGARDLSQCLLLQLENQGKE---ADLTRRIIREGLDLLARNQIPALARKFGCTQKEILAAKARICVLDPKPGARFAggPVVYQREDARVEDTGEGLKVTVYDTWGRKFVLNQEYLDWAGEQGNGQVKAYLKEQLGKARQLQQLLKERQQTLLVVFQALVSHQEPFFRLGPGHRQPLKLADLAEETGLAVSTVSRALQHKVIGCRWGSFTAGSFLQGQASSHEQGAVTEERLQQLIRELIEGEDKHHPLSDQAICRALEQQGVQVARRTVNKYRVKMGIGDKSARKE--    
168 UniRef50_A9B5F2        RNA polymerase, sigma 54 su...   369    1e-100  1  28.3%   1:473   7:461     MSPEALAQQAMSTKASPALIALNNMLVLSTHELQQLIQQELEENPALENVDLEPD----ETCSRCGRPLIEMLCLYCVHEDQRLAEAERGDYTAAG-------EDDEFDPLMMVATPAQLSEVLLRDLRAS-LPEQDYFIAEYLVGCLDDQGFLDANTGDIAATLT---IDEERVIAVLLKLQDIAPVGVGARDVQECLLLQLRRLDEEDVRHPYVERVITEFWNDLAEHRYGAIAQALNAEYDAVVEVREFIrhLRPYPlsGEGSARTNYIMPDVIIRENEGKLEAEVLMSDRSFLRINPLYQSLVKRGrsSEDRDHLSQYVARAQMFLTNIRQRRETIRRISEFLIETQEDFLRQGVRFLRPMTRAEVADGIGVHESTVSRATANKYVQLprSVIPFSHFFTASLN-----------VKDVLLELVQNE--VRPLTDQELVELLAERGFEVARRTIAKYRNQLNILPSTLR----    
169 UniRef50_B3W836        Sigma 54 transcription fact...   368    1e-100  1  26.2%   1:474  11:439     MDQSIRLNQRqkLVLTQGMRQSIQMLQLDAVDLDAYLKDVAESNPFIEVR-----------------------SHFERAEDSLSGATFEEMSAGSS--------------------TENLFDHLLMQVQLSLAGNPLRQIVVYLINQLNNNGYLILEDRQIVDEIG---ISPEKLTEAMRLLQGLDPPGVGARNLQECLSLQAHR---DTGIPKGVIAILDQDFELLVSHDMTRICEKNNLSTTELHNALDFIKSLSAAPGKVFEQPQpsYIIPDARlvTNDGQLKLWLTKWGRPELVFAEKTYQDLKKSADSATQQYLKEKHEEYLSLQHGLQRREETLLATVNQIVVNQHAFLLH-QAALAPLLLRDVAKALQVNESTVSRTIKGKHLQTDLGIFAFKDFFSKRTQAVSSSahSVDQLKFTMMQLIQSENKMCPASDNLLVKWLYEKGFKVARRTVTKYRNELGLPAASARK---    
170 UniRef50_Q3MKN6        RpoN (Fragment) n=2 Tax=Gam...   365     2e-99  1  46.4%   1:351   1:368     MKQSIQLRLGQHLTMTPQLQQAIRLLQLSTLELQKEIQEALDTNLMLEEGDesEDIETPRLAVEQTVDREIHAESNEMPDELPVDTLWTDVFDSYLPSTSHGSDdsDYDPFAQQSRPQTLLDHLAWQLNLCRLSERDNMIAQAVIDSIDADGYLRIDIDELLLTVDHPEISAEEVEAVVHRIQSFDPPGVGARNLPECLLIQLSQLPAQTPWRNAAMAICRDGFEYLAKRDVASLVRQLKESEEAVAGALALIRRLNPRPGSLIAGAPAQYVVPDIFVRKREGRWSVELNPESMPKLRVNAEYARLIRRADQSADGVTLKSHLQEARWFIKSLASRNDTVLRVGAKIVEMQ------------------------------------------------------------------------------------------------------------------------------    
171 UniRef50_C8WRI0        RNA polymerase, sigma 54 su...   361     3e-98  1  28.3%   2:475   3:421     -SLGLELSMRQELRLTAEMRLSLRVLALSSADLA---------------------------------------------DELERFAEEEPWFRYERPRPAIVSRAEDVDPLARVASREPLEERLKHELRLMDLPAPVLRVALYLADDLDERGYLAEPIDVIAERLG---ASPAEAREALAALQSCDPPGIGAEDLTSCLLLQLR--NEREPLKSLMASIIRFHLSDVAEGRLDDIASSLSVSLAQVEEAVRRIRRLTPAPAIAASNDPVAPLMPDVLVRKVAGEWTVEVTEWAAPRLELRAEYRRLM-QSGEEEARRFVSARLKRAAWLTRAIERRRMTLQSVAEALVRWQEGYLERGAVAIRPLRLADIAEEIGVHESTVSRAVKDKILGSPQGLIPMERLFSVEVAP----GWSQEAAKARLAEIVRAEDKASPLSDQAIANLLASEGCRLSRRAIAKYREALRIPNSFQRRR--    
172 UniRef50_Q8ENP0        RNA polymerase sigma-54 fac...   358     2e-97  1  27.4%   1:474   1:423     MKQKLVINQSLQWKMNQSLYQSIEILQLTGMELYDYMKQVAEENPLIEEVQPIDKEL------------------------------------------ISQFRTTDYSIDEMNTAEQSLYDQLKSNLYVLELEDKSLlvIVFGIDSLNEDGYLEITMEDWAYYC---EVELTTVERALSYIQSLEPAGIGARNLTECIQLQLNQMNIDAPYIS---SLMNEGITLLAEENSHQIALNYGITEEAAQKLIESIKLCHPKPGKLLSPTKTEFIIPEASIYKDDTEWKISFFNWSSPAIQINSDYS---KHDLDREAASFVKKKQKEVDMLQQAIDYRSSTLEKIIRIIVEKQLPFFERGPKMLKPLTLSELSAQLDLHISTISRAIRQKYVQTAHGVLPLKYFLQREVQ--KGAGVASIVIKQLLKELVDLEDKSKPLSDQKIKQLMEErqIKIARRTIVKYREELQIASSVKRK---    
173 UniRef50_C0CQW9        Putative uncharacterized pr...   354     5e-96  1  24.6%   1:476   1:449     MNFHTFLSTEQRQTLSANQLHSLEILACTNQELDSFLTKEYLENPMLE--------------------SSVNKENKLLADVESIYEKNKSYRDYYLEEDSSVEKRRSDIPAKPDLQFKNL---LLYQLHQNDYSNRQWACMEYLIDCLDSDGYFTMELSElaSAVSGLHFKTEELQTALSCLKTLEPAGIFSQSLSECLIAQLKKKEIKDDTLFLLIE---EHLEELMKGHLSTISRKLKLPTVQIKSYLYEISLLNPRPVMSAEDDEINYILPDIIVTKSNQLWDISINDSWMGKYSLNNYYIEMMQKTEDACLHQYFKEKLERARFILNSIEQRKATLIQIVSFLLDYQNAYLEGG-GSLKPLKQEQLADALGISVSTVSRAVRGKYLQYKK-TILIKSLFSAPVSSCKKeqISSSAVKEKLFQLIQQE--EQVLSDQKLAELLADSGIQISRRAVAKYRTELGIPDSRERRQL-    
174 UniRef50_Q1IR37        Sigma-54, RpoN n=1 Tax=Cand...   353     7e-96  1  36.8% 173:474 263:574     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------DALREAIHIIQNLDPVGVATQDLRECLLIQLRylPHKNGNGHIAQAivSDHMHELQNKQYKEISKALGRPIESITAALDFIRTLDPKPGLRYNKQETRLIEPDVAFVKQGDEYIVVMNDEEIPQLRVNPGYKRLlrDAAEKDVRNYVKERYKSAIQLIKNIEQRKQTILKVCYSIINRQRDFLDHGIDQLKPMMIKEVAEEIGVHPSTVSRAVANKYVHTSQGVYELRYFFSESVNGPEGGATSLLILKRRVKKLIEEEDPARPLTDEQITRILQSQGIQVTRRTVAKYREDMRIPSTHQRR---    
175 UniRef50_C5EQJ4        RNA polymerase n=1 Tax=Clos...   345     2e-93  1  21.5%   1:474   1:457     MENGlsQELKQKQTLSAYQYQSLHILHLGNAQVGELLKKEYLENPFIEQRE---GFSGEEYQWLEYYKANVKESRPIPGNGSGPEAGDADGDNGKEYGTSGCDWRMD----------------IKEQLYDGRTPENRRRLLEQMILLLDDHGFLAFSEREGSRLL---KIPVRQYRVLRKQLMELEPEGIGCVSMGEYFLFQLMKKGIHVP--DAFRDLCMNHLEDITEMTFVQIAHMIHASFQEVKRWVRVLGTLKPYPIRDSGEgaVETVIPDILIVPRGGGLEVRVNDYYMRQYCVSDFYRRTMKDEDNEELQEYMDRKLLRARQIYLAVSRRNRTICRMGEYLLRVQGSFFRGG--FLTGMTYKMFADELEVHESTVCRIVSNKYVSCPQGILPLKYFFSKGVDVVDggTMGKSSVRELIAFLIEKEPGDRPYSDGKLADMLKKegLRISRRTVSNYREEAGIRSVYERK---    
176 UniRef50_UPI000196CE77 hypothetical protein CATMIT...   342     1e-92  1  24.3%   3:476   1:412     --MKLELKQGQKHQIYQKQIEKNQILQMDVQQLLAHIEKISFENPLIDTDDMIE--------------------------------------------STSDIGKEFDIDSLSRKTEPTLKEVIHWQLINKDIDNKE--LVESLVELLDDNGYLRLSINDICTYL---KCDEKEYLEAKDTLSKLDPPGLGADTLKECLLLQLERL-KETKDIHLTKILVDECLEDLSKSHYHAVSKKLGISQNKVRELLQIILTLDPRPASNYSSseVNYPVPDIIIKDG----IVQLNPMIYKDININTNYLSL---DENKETKKYIESKLRQVSWLQQCLSQRKNLIYDIAVFLFDYQQDFFmqGSCH--PLLQKDLAMLLGVHESTISRAIKDKYIYCDKGFILLSDLIPKGT-----EDNSVDSIKEKIKEVIDNEDKKKPLSDQKITNLLKDKGIEISRRTVAKYRSELNIPDASGRKHV-    
177 UniRef50_A8LQ77        RNA polymerase sigma-54 fac...   342     2e-92  1  25.4%   4:476   6:424     ---GLTLRQQQRLTLTPEMRTTLSVLRMSAAALEELLVRQAEENPILSLRRPGPPPAAQATAYEVALDT--------------------------------------------TVAEVSLGDHLRAQLGLMSLAPPVHQAALALSWSLTETGYLDSTPAEIAQECALDEAT---VLLGLAALQGCEPVGVGARSLAECLRLQLVDKGIAPAVAARATEV----LDLLVGSDVARAARRTGIPAEDLGAVIRLLPELSPYPGQRFSPT-PQVSAPDVAVHFPDggPEIRVLRGRQSDLALDP---ELMAAARREAADTALARYGAEAEALHRALGYRANALERIVAFLVDYQSGFFREGGAAMRPLTREVLAARLGLHAATVGRAVADKTLAHAGGVIPLSAFFSARLGPETGAATSAYGVQSRIAALVAAESEDAVLTDGEIAQRLKKEGVDIARRTVAKYRGCLNIPSSYDRKRL-    
178 UniRef50_C8S196        RNA polymerase, sigma 54 su...   342     2e-92  1  28.5%   2:475   4:423     -RPRIVLAQTQRLQLNLGLSASIQLLQADASGLTRYLQEQAADNPHLSLQRPAPG-------------------------------DWLPRWTTAFAQTAQ--------PPEAASAAPSLMAHVMDRIEALTRPGRERQIAHLLAEALEPSGWVGRSLEAIADSAG---ASLPEAEAVLAKLQkiEPVGLFARNLAECLRLQAQDADCLDP----VMQAVLGHLDLLADGQFSRLARLCGVTEAEITARLRLIRGFDPKPGAQFDHGAAPLREPDLLATRGPTGWQVALNRSALPMLELH--------APDHRPVPEAAKAQWAAAQALNRMLQNRNATLLRVAAEVLRRQEAALERGLSALVPLTMAQVAEALGLHESTISRIVAGTAVDTPLGCWWLRQMFSTRLGNETDG-VSAAALRAALARLVAGEDPGKPLGDQALVEALAQDGMVVARRTVAKYREMLHIPPAHRRRR--    
179 UniRef50_Q3IW74        Sigma54-2 (RNA polymerase s...   341     4e-92  1  26.7%   2:469   4:420     -RQRISIAQTQRLQLNLGLTASIRVLNSDAEGLTRYLQEQAAENPHIQLEPATS---------------------------TDWLPRWTSVLSRLAQGEGSAGGE------TVAAAGPSLMAHVMARIDTLYPRGPERRIAILLAEALEPTGWLGTGPDEIARQA---RVPSAEVEAVLAGLQKIEPAGLFARTLAECLRLQAIEAERLDSTLSC----LLDHLDLVAEGALGRLARLCNTDEAGVTARLRLLRTFDPKPGAQFDPGAAPVREPDLIATKGEAGWEVSLNRSAMPTVQI--------RKPDKRPTTPAARAAWTQAQAVGRMIENRNATLLRVAREILARQEAALDEGPSALVALTMTEVAEALGIHESTVSRVVAGTCVDTPRGTWWLRRMFSGRLAE---GGPSAAAIRAAIARLVAQEDPAAPLSDGALVEALAAEDMQLARRTVAKYREMLNIPP--------    
180 UniRef50_B6BVF1        RNA polymerase sigma-54 fac...   339     1e-91  1  25.9%   1:475   1:420     MALSAHLALKNSLKLSPNIEQSVNLLKSNEIEIELLINDFLSKNPYLQLDD---------------SEKINLNYSANVIENNEENISEDNIYGL------------------------SLKDYLLNNLFDLGLDYEDELLARLIIDYIDDNGYLKEGYDFFITELadSDTANKKIKNLILKLNTISSPGIGARNLQECLDFQLDQF-IQNQIVLDSKKIIENHLVDLANKNFKKIATNLNLQTDHIIKCNEFIVTLNPKPGLAysSDTSQFITPDIIVKNNGDKFNVSL-KNNYDSLKLFNLKKDEIND----------KDAYNQAKWFIKNLNYRKINIIRVVNAIFSHHKEFL--NENILkpLNIKTIANQLEIHESTVSRIVNNKFIETPHGIFELKYFFINEVNNT-----SNKTILDKIKAIIRDENKVKPLSDSEILLTLGQENITISRRTVAKYREQLGILSASKRKK--    
181 UniRef50_B9KSN5        RNA polymerase, sigma 54 su...   332     1e-89  1  26.7%   4:475   3:402     ---SMQLRLGQRLAQRAVLVQRAEILEATGADWAERIAAEAQRNPFLRVRQPATAAPIPES----------------------------------------------------AALPPDLHAWLGSQIRMAMADPEDRALAFRLLEALEPSGWLGQPLSRLA------PGTEEQAARVLHRLQQMEPAGIFARDLRECLMLQARDRGQLDP----AMAAVLDRLDCLASDGPAAVARAAGLEEQTVLRCLELIRRMDPKPGAAFAPGDAPLREPDLIARRTASGWSVELNRSMLPEVRVTPL---------PDGSPADVRQMHQEALSLAKATGLRGRTLLAVGALVVERQRAFLDEGPAALVALGIGEAADALALHPSTISRTVTGLLMATPRGLVAVRDLFSARLA-EGTGALSAPALQALIRETIAAESAQAPLEDGEIVEVLARRGIHVARRTVAKHRTLAGLPPAAVRRR--    
182 UniRef50_Q73JL4        RNA polymerase sigma-54 fac...   331     4e-89  1  25.4%   1:473   3:462     LKQRQQQILSQKMVMNQQMLNAVAMLNLSSEELQEEVIKEVKRNPAL---------------------------------------VFKTSSRVSAASAEEGDKHQSFLESIEDDSRKTLQAHLIEQAGESITDEYVLDAAMLIIQNLDQNGFYWVPLEElaGLLAEKKINHAEIKKALNIVRRFEPIGCACSGFKESLIVQaeILDIYKTIYSLCVKIIKEHYEVLvkLFIKKLakKIDIDLETAEELAGLIDALNPKPGLAYAsdGEKFITPIAEIKREGNEIKIIINDEEVPALEISPEYEK-IKNSGSKEEKKEASEFLNKAALFMNVLAYRNQTILKVLTALVNFQEAFFLGRPcyLKPLKQIDIAEIVGLSPSTVSRVSNQKYIRCEWGLFEIKDLFSPEVS----GGLSKDFVEKAIQEIIESDTEKK--TDTRISQILKERGIDIAVRTVNKYRKEMGLPSSYHR----    
183 UniRef50_C3XKI9        RNA polymerase sigma-54 fac...   330     6e-89  1  26.8%   1:477   1:436     MKLRAQTSTTLKAKLSSTLKSWLPILQSGMGDLEETLNGFGLENPYFEVKSGIVDTLSTQS------------------------IAYKKQHKEKMRGAKGGKSLEGDGIEQFCIQEESLEVLLLRQIEplFPTRNSQEIAKKIIENLDNEGYFDGDCVVIAQECSKdeIYASEVEKIRLRFAYLEPPGIGALDVMESFRFQLDHLDVPSDVYGLCLEILEN------------LQEHTRFKNNPLyqAMRAIQSFKNPPALDFFQKEVA-VIPDILVLEDKDNIQVQINDKYYPSILI----QKQEKTDKNSIQDAFIKAKIKEARDLVDALEMRKATLYKIGLMIVEYQYEFFKGGE--IKPMTLKDLAEEFGHAPSTISRAISNKYLECSRGIFPLKNFFATAI----DEETSNTTIKDFVADLIRNENKQKPLSDSKILKLATErkVTMVRRTIAKYRAQLNIASSSERKKLY    
184 UniRef50_D1B1S7        RNA polymerase sigma-54 fac...   330     1e-88  1  26.2%   1:477   1:419     MKLRVSQTQTTKQKFSSTLRGWLPILQANLDTLVETLEPFVEENPFI-SVKAGSEIPEKPFEKKNIFRESAKTSVSDTIEALTLD-------------------------------KKSLFQTLYEQVNplFPTEKSQRIAYEIIENINAEGYFEAdlVEIAHTLNVKET---EVEKIRQRFAYLEPLGVGAQDVKEAFLFQLQDLTLENTLYEMAEKLILN-FDVIESFGKEPLFH----------EALNIIKRFHNPPAIDFLEEEKE-VVPDIFIYTIEGAIEVRLNDTYYPEVIIDTE--------GVDESNSFVSQKLKDAKDLIDALEMRKATLYKIGLMIIEYQYDFFFG--KAIKPMKLKDLADDLGRNPSTISRAIAGKYLSCARGVIPLKQFFATAVE----EDISNSAIKEYMIELVKHENKQKPLSDIKLLSLIEKqnVKMVRRTITKYRQQFNIASSSERKKLY    
185 UniRef50_B9Y8Z2        Putative uncharacterized pr...   327     6e-88  1  25.9%   1:475   1:410     MKSTLALtiQPQHRLKPAMLESLNILHMSSDALAAYLNEQMLSNPLLEWSDQ----------------------------------------------RTVRSDDLYEQAGQFVAAEVSLKQQLRQQAAVL-LDPADQVIAETLIGLLDDDGYLREELDAL---CGLMHINKARLNRILSLLKTLKPAGIFAHDLRECLLLQLMEQHPENELARR----LTEHLEALARGGTTSLCRTLHCTADQLNEAIALLRRCDPKPGRS-QGAAAAPLVCEVQVEIEDGQFKITL-AHSFSELIFNP------MPINDPTVQDYLKQKTAEAKNLLLAIQKRNQTLASITRAICLNQSAFFLRG-QPLIPLTRHQIADQLGLHPSTISRSLAGKGLEFNGQLYPFSVFFSAQVRN----DLSQDQVLRQLKRLIHEEDAEAPLSDQQLSDRLKALGCPISRRTVVKYREKLRIPDSRVRRQ--    
186 UniRef50_Q256I9        DNA-directed RNA polymerase...   324     5e-87  1  25.1%   8:474   3:417     -------QQHQKLSlsLRMQQGLQMLQSPITELSSYVLQQIIHNPFFDLSSLEEE-EWSACSPLSSVDAS-------------------------------------------YSRPESLFSHLLTQVQQTFDHAEDLLIAQHIIGNLSDQGLLLSPPEDLSLQL---EVPLDSIHVVWQTIQHFHPLGIASPSLQDYWLLHLEGSSH-----QLAYKIIKEHYALLINCNFLRIAKKCRCTPADLKQALkaLATIPWCPAEGYAssSTQPALPDVYVTKKQQGWEIQISSRGLPPIKLNSEVFHIYEQLPREEKKN-LTQQILSAKWLIKNLRKREQTLFSIIEKILPHQEGFLLGKTSSPKPLSVKQLSEDLSYHESTIFRAIENKKLAAPIGIIPMKLLFPRAASDDS---HSKETILQWIHQWITSE--TTPLSDSDISERISKHGIQCARRTVAKYRAQLKILPAHKRK---    
187 UniRef50_B9L984        RNA polymerase sigma-54 fac...   322     3e-86  1  24.4%   3:477   1:402     --MKLKTKITNKL--STKLLGFLPILKAGVDELFEEIKEISKENPYIEVRNK------------------------------------------RFVTVSNLKNANADEIEALTLSEETLYESLLKQIEDSNltKRSKDIALEIIEDINNEGFFEGDEKEIAKRLG---VDEEKVKRVRERFMYLNPAGVGAKDLKECMIFQLQNIDMPEDVYKLASEMIT-YLENIDK----------FVNEPKYKEAMKIIKQLNVVPAMEYIKDEE--IIPEIIVLNIDGQLEIRINDEHYPEINV----------KDPENKNSFSKEKFKEARNIVDALEMRKATLKKIALMIVELQYEFFQGGV--IKPMKIKDLADELEYAPSTISRAISNKYLLCDRGIIPLKNFFSIAL----DEDTSSNQIKEEIKNLIKNEDKNKPLSDDKLTEIINQknLNLVRRTISKYRDQLKIPTSRERKRIY    
188 UniRef50_Q30RF5        Sigma-54 (RpoN) n=2 Tax=Cam...   321     5e-86  1  23.9%   2:477   3:419     -QLRQTQSVENRHKLSNTLRNWLPILHSSLSDLGEAMSPFIDANPIIEISSGFEDSFEK--------------------------------LIPKKIGNSSVANTRTEQIEALTFVKKSLYDVLDEQIepLFPTPISQKIASFVVCNLDENGYYEGDSEEFCK---NNAITIEEFEKVRLRFAHVEPVGVCAKNLLESFLFQLDSSDISDKVYPLAIKVIKD------------LENIYDYSNEafSEVMRVLTTFKNPPAIEYLEESAQ-VIPDLMIfnDNDSIEVKLNDAFYPIINIDTSY---------SIEHDYVSQKIKEAKSLVDALDMRKATLYKVGLMIVEYQYEFFTGG--AIMPLTLKTLADEFGHNPSTISRAIANKYIACDRGVYAMKEFFTTAI----DEDVSNAAIKEFVIGVIKSENRKKPLSDMKLLELIQDkkVQMVRRTIAKYRKQLNIAGSSERKKLY    
189 UniRef50_Q7P6F0        RNA polymerase sigma-54 fac...   319     1e-85  1  21.7%   6:476  46:443     -----RQKLTQSLKLSQMMKLSINILKMSVMDLNKFIEKEFSE-------------DSGISVELNYSKKENFNGGKEAEMNYPTD-------------------------------EKNFFQILEEQLSYFKINKKIKEICIFIINNLDKKGYLELSKIEIKDIL---EVSNKELEEAFDIIHNLEPYGIGAYSLEECLKIQLKAKKIIEEKLSLF---IDNYLYLLADKKYDLIKEKLNINDNILFSYIDIIKSLNPIPSRGYSVGKVRKIIPDVLVEIKKNEIFYEINRASIPQINV-----------KDKIEDKYYK-KINE---IISCIEKRFETIDKIMKIIIREQKIFFTSQGKKINTLKISDIADKLNLSPSTVSRAVKEKYIKTNFGIISLRKLFNL--------DSAVFLYQQKILEYIENENKENPISDQDIVNLLEKDGIKIARRTVTKYREKLGYKSSHKRKKY-    
190 UniRef50_D0GPK2        RNA polymerase sigma-54 fac...   318     2e-85  1  25.5%   1:474  24:450     MEIKQQlkLVNKQAISQKQLYSLEILKMSEQELFEFLKKEKEENPLLEIENE------------------------------------ESFFSSFWKSEKNDKAFEVKDE---TVASKNLIENIKLQINNQNFSYIENEVLIYILNSIDESGFLDLGIKEIRKKF---DIDNKKFKYILELIKEAEPNGIGTKNTKDFFKYQLLKKRIKD---KKLIILIDNYLEKLTNQ--KELCKELDIFEGKLSEYIGIIKGLKLKPIENIN-EKIEYIFPDIIVKKINNEWKVMLNEGFYKNIKINREYSNLLEKSEDQEMINYINKKIKRIDFIIKCIEQRRQTLYKIGNVILEKQKKYFEKNEDII-PMKQKDIALELNVHESTISRAIKNKYLESLRGIVKIKSFFSIGYDKKNIS-ISSLTIKKYISEIISNEKNGVIYSDEKIRKFINEkeINISRRTVAKYRKELKIYNKNVRK---    
191 UniRef50_C4PNB9        RNA polymerase sigma-54 fac...   315     3e-84  1  23.0%   5:477   2:421     ----LHQHQTASVALCphLQQGLDMLQMPVAELATFVSQQITINPCFDLDSLDSPPES----------------------------------------------FSFFPISEQHPFTETLSAYLLRQIDTNFASSQERTIAQYIVGNLSPEGLFLENPSLVAADLN---VSEHLFHKVWQRIQQLHPLGVGAPSLQSYWVSLLQTSPH-----KEALAIIRNHFPRLARCDFTTIARKMHATTTEILTFLraFASIPWCPAAGFSEtpPAPALPDAYLSfrNSSWDVSINKDCLPSIRLNNTVLDIY-PSLPREEKDHLSQQIRAAKQLLRNVKKREETLLAILRVLIPYQEEFLLKKRTSPKAFSVKQIARELSLHEATVCRAIDNKTLATPVGLLPMRSLFPQAVGS--CPDQSKATILHWIHQWISTE--KHPLSDAAISQKIIEKGIPCARRTVAKYRSQLNILPAHQRKHLC    
192 UniRef50_C8PAD9        DNA-directed RNA polymerase...   314     6e-84  1  23.0%   1:474   7:420     LSLRLKESLITRLFLSPKLKQDLDILSYNTEDLLKVLHDIAETNPFIDLKYTNANT--------------------------------------------------TTLDWVQDPSQDSLVEYLIKQIQLSAWSNNDKKLVTFLIYKLDNNGYLRFTCKQLANEI---EYSEADIQNAKNLLHELSPLGVGAYDLNECLLIQAKKLLHFNPI---ALAILEKHL--LERLADTSSWNSLPWKKEKILEALKELRKLEPTPGAKFDntNIQYLIPDLIFEIDNGHVLVKDSKFNLPEVVFNEVEYTNLKGSCATNEVEYFNAQKKQFMDLQLSLERRQKTLIRLGEYLAKYQLAYLKtdKKQLKALNMNNVAQSLGLSVSTISRAVKDKYFECNNRIISLKIMFMKSFKN----NITAMKVTDTIERLINEEDKSHPLSDQDICDQLLLQGINISRRAVTKYRTKMNIQNSYWRK---    
193 UniRef50_Q7WTR8        RpoN (Fragment) n=2 Tax=Pse...   313     8e-84  1  48.5%   1:305   1:325     MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDdpDVQEPTYQESAPTVDNLEDGEWSeeLPVDTAWEDVYQTSASSLPSNDDDEWD-FTTRTSAGESLQSHLLWQLNVAPMSDKDRLVAVTLIDCINNQGYLDETLEEILESfpELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLTEAQRLVTDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVIPDVIVRKDNERWLVELNQESVPRLRVNPQYAE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
194 UniRef50_A6DC70        RNA polymerase sigma-54 fac...   312     2e-83  1  24.4%   3:477   1:401     --MKLKAKVTNKL--STKLISFLPILKAGLDELYEHIKEVSFENPFIEVRNK------------------------------------------KFITVSNLKNAITDKIEALSTSESSFYEDLVSQIENSHftEKSRFIALLIAEDITPDGFFDGNEEEIALSVG---VDVEKVKKIRERFKYLTPTGVGAKDIKECFLFQLDNLDIDEELYLLVKNMI---------NDLENLDKFYK--HKRYNDAIKIIKDFKTTPALEYSISEEIIPE--IIVINNNGNLEIRLNEEFYPEIFINEYV-----------DDKYSKEKLKEARSLVDALEMRKSTLKKIALMIVELQYDFFKGGV--IKPMKIQDLADELEFAPSTISRAIANKYLLCDRGIIPLKNFFSTAIN----EEVSANQIKEEIKNIIKNEDKNKPLSDDKICEFINEknIKLVRRTITKYREAINIPSSRERKRLY    
195 UniRef50_UPI0000D54D13 DNA-directed RNA polymerase...   310     7e-83  1  25.3%   3:464   5:412     --LSQKFKQRQKLTLTPSLKKSIDLLQLSRYELINKIQQEIEENPFLEKIEDFENNTAP-----------------------------------------------DKDFSFEIESKVDLKGSLLDQINDLNLDIKSLQISKLIINNIDEAGKLVEQLEDL-EELSSYEYSIREIETVLqvIHKLHPHGIGYRDHKECIRIQIEYGKLKNELKEICLSIinDSLDDL--NKIKNNFISNGGEESAFENALNEIKKCDLSPGLNFQES--QYIYPDLKITKENNQTKISFIEKDFPKIKIDEALAKNVKKNLKIEKNNELSEKISEAKWLLSSINKRNDTVLKVGELILSKQIHFFENNPIKIEALSNKEISEKLNIHQSTVSRILRNKYIESPKGIIPLKSLMVSSVS--KSRNVTSIQLMKLIENITKKEKKPKSD--KQIAIELNKRGFNLARRTITKYRKM-------------    
196 UniRef50_UPI000196AFF4 hypothetical protein CATMIT...   307     5e-82  1  23.5%   1:477   1:407     MKQKMqqTLKQTLKLNQKLLKSLDFLTDNIDDINKVVQQVLETNPFLEL--------------------------------------------------KSPKNYDTQQFIESISNKRSLKDDLYLQLSACTRPYNE-DLMDYLIESLDDSGFLSYPIDQ---YLTDLDIDREMLDAHLDILRSFEPNGVGAADAIDSIMIQLKNNNKIKS-----YTLFRDYQDVILTQNYSLIKQKTGLKKEEIDHLFYEIRSCNPFPCNMYSSSQDDYISPDVLIEVEDSNIIIT--PINQPELIVNDLLYEKVKNDEN------MKSYFNEAHFLIENLTKRNQTVLFVANALVDIQSGYFLY-DDELYPCTLSQLANETGFHESTISRTLNNKYYSFNGEVYPLKQLLVSQTASGD----SSDSIKKAIVELVDSEDKEHPLSDNQILKKLEELELHCSRRVIVKYRQQLNIPSSTKRKILL    
197 UniRef50_UPI0001906882 RNA polymerase factor sigma...   306     9e-82  1  34.5%   3:344   5:340     --TSLHQRQQQSLVITPQLIASIRLLQLAHTELNQFVEQEIEKNPFLDLASNDGGasPTAADDPNISAREDHVDGPARTDMPELSSPWKSIRDTGNLSPG-----ERPSLDEFAASTETLHEHVAHQIALTAFTPQERLIAGALADHLDDTGYLQVNLQELAERLNSPEAG---VKRVLEALQLFDPPGIFARSLGECLEIQLRQRDRFDP----AMAALVANLELLARRDFRALKRRCRVDEDDLLDMLNEIRALDPKPGNQFQSARSESIIPDVFVLPsgGGWHVELNREILPKVLINQTYFAQVTraQSSKDQSFLNECFQSASWLVRSLDQRATTILKVA-------------------------------------------------------------------------------------------------------------------------------------    
198 UniRef50_A8RDS7        Putative uncharacterized pr...   297     4e-79  1  22.3%   1:475   1:402     MEQKLLLkiKQKSNFHSAREQALQILQMNQQDLQMYIREQADHNPFL------------------------------VMNTIGEDSDIFDVY----------------------SPKQSLSDTLYDQLCYIEKPYKE-EIVDYLLSRLNSNGYFKISLEQLIL---GSCFSQKEIIETIAVLQRLEPIGCFCFNLKESLQIQCEM---HEEACSETGYILCDYLEDLAFHRFAQVEVKTGLSLEEIEEGFAFIQGLNPKPASNYA-TQSAVILPEIRVKLVQGHLVLETVQEI----------FRLQLEEDMGTHHEYLKRQRKEATLIMNSIQKRKMTIMQIMEFLVDKQKAFFLEK----KPltLQDVSKACGLHVSTISRAIQNKSFEFQNNYYPIKYLLVHG----GDKAHHSQEIKSRIKALIDNEDKQRPYSDERLRKLLEKEGIRISRRTVSKYREACLLFNASQRKQ--    
199 UniRef50_Q9ZLC8        RNA polymerase sigma-54 fac...   295     2e-78  1  24.9%   5:477   4:410     ----LRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKN-----------------------------------FSDRFNTKKSSD-----HLENCATASKSLFETLESQipPLFPTETSQKIAMDIISGLNNEGYFEENIEERAKVLG---VESEVYEKVRKRFSYLNPAGIGAKDVKEGFLFQLDGRELDneLYEETRKII---LNLEKHHEFSKDFY--------YEKALKILKSFKNPPAIEFLEKEIE-VIPELFILEVDNEMIVRLNDESYPTISLEENRFK---------DSDYLKEKLKEAKDLIDALNLRKATIYKIGLMLLEYQYDFFKGKE--LRPLKLLDLANEFNHSVSTISRAISNKYLACERGVFPIKHFFSIAL---DNSETSNAVIKDYLLELIKNEDKKEPLSDAKILELIEEkhLKMVRRTITKYRQLLNIASSSERKRLY    
200 UniRef50_Q5LLX0        RNA polymerase sigma-54 fac...   292     2e-77  1  21.1%   3:475   5:425     --QRQIQTQAQKLALTQAMRASLSLLSMDADEAAEAIRREQSRNSFLRTVPPPLPGGGGAADQPEIAHMESGTED------------------------------------------------LLRQVALIRMTTRQNQLAQDLVHSLDERGFLPDSPEETASYL---QCSPAELSALVPILqaVEPAGVFAWSLADSFRLQLQAKNRFDPLIER----LLCRLDLIARQDIDGICKACDVDREDAIEMLEDIRSLNPSPLFRQSHPIQASGEPELIitAPDGTCTASLNEAALPRLLTDDafSSTMAAETDAHAQSYYRDCYRGAANMVRAMQKRANTLLSAGQTIADRQHKFIRSGRLRDkpLTMTLIAQEAGLNKSTISRALSNCRIRLDSGIFPAEHFLARPLS-DDTPDRTRDQVLQRLRLLIETENPRSPMSDQVLARQLGKARLSISRRTVAKYRQFLQIPGAYERKR--    
201 UniRef50_O83149        RNA polymerase sigma-54 fac...   291     3e-77  1  23.7%  16:471  13:475     ---------------NQRLVHGLCLLQLSRGDLKTEVLRAVQRNPLLEIRPSSARRTGKACYLS---------------------------LGDRRERMRARDRFQQLLENQPDKQVDNIRAVLREQVFYQKHEAIVLDLACAFIQMLDDHGFFSISPAIFQNMCGSMPTALQeiPQAIALIQRLEPQGCAVFNFKESLAVqlRFERFSDPLYRCVINLLTHHSELLFCSDNMCDGRVskVSSNDVKDILLLIKELHPFPGKCVSndTNMLLEPDVLITKTAHGFVTQINCTGIPTVVFRNDY---CMHSKAAEKNHALKACMHDALSLVSMLSYRERTLLDIAKTIVHYQCGFFDHGPAKLTPLRMTDVAHRTGLSVSTVSRIVRDKWLQYGSQHFSLRYFFSPRvsTEEYRDRSSlsVKYRISRLIQEVRTQRilSDRRIAQLLGEQGIKCARRTVNKYRSELRTCSSS------    
202 UniRef50_D0D5Z1        RNA polymerase, sigma 54 su...   289     2e-76  1  23.6%   1:474   1:416     MSPSTRLQVSQNQVF--RMGHVISVLQLSGEELDEHLLQTAQSNPLL-------------------------------------------VVRRRRQTAIRAGSAHDLIDSTFADRPTSLYDHVLRELalAGRGAAMERLILALVEELEPSGWLGRPVPQIAETLG---LSVQLVETALDLVQrvSPAGIFARDLRDCLRLQLEDQGLWDD----AAGRVLAHLEVLGTGGAEALERATGLDAATIATRLHRLRRLDPKPGSQFATDLTLMREADVRIEARGDGWV--------PIFRTSFETVVAVPPGASGDSSPEMRRALGEARALKQALDLRQGALKQIVQVMIEVQGAFFRDGPEALQPLTQAMIAAKTGFHLSTVSRVLNGLLIEGPNGIIPARTLCARRSALCSTDGPSKPKVLARLRALLLAECASHPLSDVQLSDALRAEGLAVSRRVVARYRHELGFAPAAQRR---    
203 UniRef50_B7C885        Putative uncharacterized pr...   288     4e-76  1  21.9%   1:475   1:402     MKQDltHTYKQTLHMTTGLKSHLEILSKDRQTLSDLLYNVSQNNPFLE---------------------------------------------------YTPSQDIQQYLETGISNKPSLKDELYLQLHTSTKKYNE-PIANYIIESLDSHGFFD---QDIHTVLSDLKCTKAQFEETLSFIQTFEPIGVAAKNSIDSLMIQLKTKG-----YTVAYTILKNYSKELEEKDFYTISESLDIPYETVFDELAHMQECNPFPCSEYDTEStnLALPEFTIEIDEDQLKII--PKEMGNLSLHCEEVKLSKEA---------KKYLNEAKFYIDSINRRNKTILLLANILITHQKNYFLFQDD-LKECTLKEIAEESGYSISTVSRTLSDKYYEFNDHMYPVKDLFISKTHK----GSSKDSIQKAIQLLIEVENPENPLQDEEIVEELKNMELYASRRTISKYRKELNIPNSKQRKK--    
204 UniRef50_C0XEY8        RNA polymerase factor sigma...   287     9e-76  1  23.8%   1:475   2:408     INQFQKTTQSQKQIFKQYQLTSLSMLSDSYTDLAHYLKTQEEKNPYLTV--------------------------------------------TSNRTKQNLDWITEDESGLTKTK-------LLHDFNLEVKSNKLKYFGAIVIDNLDGHGFLS-DYHHLIEQFPQQQ---KLINKAINIVQNIGPTGIAARSVSECLLLQLKHKSN---YPKNTDTIIKYYLEDLANHNFRKIYTNLSISKNDLFKVICFIKSL--RPGVEINTdnNKIIIPELFICYDHKKIFTHLIEDN----QFNLEFKTPSYSTNDTETLKFIKKQKKQAQNLQKNYQRRQDTLLLIGQTIAEQQEIFFATGGKKFTPLNESQIALETHLNVSTISRTVRSKYFQCDFGIFPLNILFSSKINN-----FSQKNILNMLKKIILNENQKNPLTDDEIKNKLLKNNIAVSRRTISKYRKKLGIGNYYQRQK--    
205 UniRef50_B1CB68        Putative uncharacterized pr...   268     3e-70  1  29.6% 233:475   2:243     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKISKELNISRLEVRKYIYSIKCLNPKPLINIKMSEPVYINPDILLTYENNKWNIELNDNWINNYYISDYYLKMIDTSEDENLKMYFKEKLSKCRFILNSLEQRRNTILNITKVIIRRQEKYFR-GNGKIVSMTLSEVADEIDMNVSTVSRAIKNKYMSSPIGIINMRDLFSSYVSYGEDIRLTPEDVKQKIKVIIEEENKKKPYSDDEIVNKLNDENINISRRTVSKYRKELNIPTSYNRKE--    
206 UniRef50_O66858        RNA polymerase sigma factor...   268     4e-70  1  25.9% 112:474  65:397     ---------------------------------------------------------------------------------------------------------------YQIPYTPSELEELQQNIKL-ELEGKEQELALELLNYLNEKGFLSKSVEEISDVL---RCSVEELEKVRQKVLRLEPLGVCSKDVWEFLELQ------IEEIYPEEEEILKKALRDLKRGKKLKPEIKGKLS------------RLRLFPLSSSAEKVYTFAKVDAIIEEENGEFFIYLYEDFI-DIDLNEEYWELYKKSRN--LQKELKEAFERYESIRKVLDIRRRNLRKVLEKIVERQKDFL-TGKGSLKPLTLREVSSEIGIHESTLSRIVNSKYVKTPVGTYSLRTFFVR----ESAEGLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLGIPSSRERR---    
207 UniRef50_UPI0001BC42F5 RNA polymerase factor sigma...   267     5e-70  1  21.7% 107:474  49:382     ----------------------------------------------------------------------------------------------------------EKSFFENLTEEKDFYTFLEEQLLYINPPKNIRENLIFCIYNLNSSGFLEFSDIELCKHLG---ISMKELKETYEYLYTLHPIGVGAHNFRECIRLQLQKKKEWNQKMEG----ILLHLQYIADGNSEKLRKKLGITKEEFQSFLNKIKNCNPIPARGYFIRKNLTIVPDFVLVLENEVWIAKENTELRDSL-----YSTQIIETP-------------SIKLLRLCIEKRMDTLKKIVDYVVEYQKEYF-KGENFLHTLHEKQVAHDLNLHLSTVSRAIQNKYLKTEKGIYSIKSLFCY--------EEKREKIKMEIERLIKYENYQKPYTDTQIQEELKSKFGKIPRRTIAKYRQELGYVSSFYRK---    
208 UniRef50_Q7M8V1        RNA POLYMERASE SIGMA-54 FAC...   266     1e-69  1  25.0%   5:476   2:393     ----QSLRISQKQALRLSVRQWCAVLEASGSELEKKLSEAALENPFL------------------------------------------KFRRKSLPTFSSGDFIENSPKERF------LQESLLDQIDSSFFPTesQKIAAKIIEELNVEGYFEGDESAIAEEFGT---SEAEVEKIRKRFRKLDPCGVGAKDSLEAFEFRLLESDYDEDLSSLAYEIL---------RSPGQIHHLQG--QARLLEAIDLAKRFSAPPALEFMQGEA-FRRPDILVAEDEGVFRIEVWGDE----------FELGVEACGVKEKNSLK---KEARLLCDYFNMRHSTLRKIATLIVDLQRDFFQGGE--LRPFSVSQAALEIGISQPTFSRAIAQKSLCCSRGTFPLRKFFPY----EAKNGVSGEEIRAFIKALIAQEQGGRIYSDEQLSELVKRkgVHIVRRTIGKYREQLGIPSPNFRKKL-    
209 UniRef50_B7J217        RNA polymerase sigma-54 fac...   265     4e-69  1  22.1%   9:466   2:409     --------IKQKLKISQNliQTIKILGLNQKELTKLILEESENNECLEID-----------------------SNKIFFETLKTYRFKKVFYKEDDMIKNQHD-----IALEKTQTNTSLKEHLLLQLRIQRINEDEIKIGEILINNLNSKGFHIINPYDLFKKEEKEKV-----KKTIELIQKFDPIGICVPNIIESLILQAKHHKLETNIIKILEK------AELLEKTQKKLKEELKIRSKEFNTALEIIrkLNPNPTLEFKDPNDtyVDPDILIINHNNKFKIKIKE-------VNIFKKELKRTSENP-------QKQKKAKWLIESLRYRDEILAKIGIAIYTLQKEFLRRGFKSLRPMNLSILSEKISVSKSTISRAIKNKYLKCEWGTILIKELFSS-VGGAKTNEFSKLSIKITVKKLLEA---NKKMSDKEISVILKSKGISISRRTVNKYRNELK-----------    
210 UniRef50_C5CDZ9        Sigma-54 DNA-binding domain...   260     1e-67  1  22.2%   1:465   3:381     LEHKLSQKLEQKLHLSLKVQHVLKLLQLNSLELMTELREIVDGNPLLELEGEDYKLIDE--------------NDIETPEEENYESKSDSPYFPKHYNPDFDGWDFERLEGPQPSFEEMLRNF-----AFYILEDDEFKIFEILMDNMNEFGLLKRSIEEISREVAVNERDI----------------------------------------RKVIKKLRDSGFDGLFAEKLEEL--------KELGEGIVL-------PSSGYNDGNpmYIEPELYIDFVDNRFIVTAKDYGL-AIRVDEVYRELLKNEKD-EAGKFLKEKFQEAEFYVNALEKRRSTLITIGEELVRTNPDFLLGYCKTLRPLKMTDIAEKLDVVVSTISRAVKGKFVQTPIGTFPLRYFF--------GSEQTREQAMEIIAKLLK-ENPK--LSDSAIAKKLNEIGIKIARRTVNKYRNVL------------    
211 UniRef50_C4FUT1        Putative uncharacterized pr...   259     1e-67  1  19.1%  21:466  35:433     --------------------QLWQMLGLSAAQLTYFLEDEILENPFIELDYPKTKPQQASVTLQEHSAII-------------------------------------GVDPQMPEAPRNLPMFLFEQIMMYRHT-IIRDAMVRLIDLLNPQGYLPYSYQEVAKQLGIEPI---IALDAITLFQQLEPAGIGAYDMRECLMLQTEQ---DAHAPNVAYYLLEEYFDQLKAEDYQAIVAATGLALADVLACVSYYQTLRTSPADLFQVEEEDHLLDDVTVLQDQEGMKVRYNAHYYPKLIFNEPYYQEMLATQEPEVVAFSKPQKLMYDRLARNLRVREQLILKVAQAIAAVQHDYFSQISDAKVPLLLKQVAEITGLPEPVVNLLVSNKNIGFGQYVLPMTDFITVATR-EGRDGFSAEKIKQVIHEILH--DAPADLSDEELVERLEERKIMISPFMVRNYRQALG-----------    
212 UniRef50_A8UUG6        RNA polymerase sigma factor...   258     4e-67  1  22.8%  23:474  22:396     ----------------------VEILLHPVQELEQLLKEEKESNPFIEEVYV------------------------------------------SGRVHTFYEEKRLPEPTLKIHPLEALQRNVKAELEGLDLD-----IAQELISQTDEKGFFRGDQTAIALKYG---VSKEYVEDIREFVMRLDPLGVCSKDLKEFVRLQIEELYPEEPELVEEFE---------KALRGENISEDSRLKLSHVR--------LSP---LEEEISVPRVAKVDAVIELDDGELVGYVYEELI-EVRPSRSYMEMMSKVKG-EAREFLKEYLERYENFKKILAIRRDNLKKILNEIIEVQADFL-KGEGNLKSLLVKDVAYKLGVSESTVSRLISSKYVKTPQGTYPFRFFFVR----ETAGGISQEELMKEIKEVVAREDKGKPLSDDEIAKILQSKGYNVARRTVAKYRELLGIPSSRRRR---    
213 UniRef50_A1BC03        RNA polymerase, sigma 54 su...   245     3e-63  1  21.9% 113:472  67:394     ----------------------------------------------------------------------------------------------------------------LLPQPDDPRAELIAQIGLLPLPADQMRIAQELVHCLDDRGLLADPLAEIAGWLGT---TPAVLEGLLPHLHRLEPHGVFARDMSECFRLQLRAKNLLDPWMDR----LLDRLDLVAEGNLSAIAAFLGTDHEDAGDMIADIRALTPAPLGIPAAGGPPP--------------ELELTAQGV--LKPGPSLALALGDEGDGEARAM-------AQGLVAAVENRMQTLLRIGTALIEIQSSWLL-GHGARRPLTMTALGTSLGLSKSTISRAVAGVVIRTPAGPVHLRDLLKPPISSHNP-DLDREGVLQTLSQIIGDWPEGYRCTDARLAEKLAARGIRLSRRTVAKYRLGLGVPRHRQ-----    
214 UniRef50_Q2EU28        RpoN (Fragment) n=40 Tax=Ga...   239     1e-61  1 100.0% 310:470   1:161     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPS-------    
215 UniRef50_B9Y4S8        Putative uncharacterized pr...   239     2e-61  1  22.6% 107:474  76:411     ----------------------------------------------------------------------------------------------------------DEVLFAQAQPEFDLRADLLNQLHTGRWRFR-LDVAEYIIEALDDHGFYD-------PAQPAPGFQPEEIAAALSGVQQLEPFGIGCRNSLDYIRRQLRFRNE-----RMALRILDEGAEELSRGQISTLCRKLRLTATELQDQLNVIRSCQLYPC-QLGPVENTYVQADVRLTLEDGEFSI---------IPLSP---QVLLDIPAGPLSPQLKQYLKEAQLTLDLIDQRNLTMQLVFQCLVRRQRDHLLQ-DAPLAVCRLKEVAEETGLHLSTVSRACAHKYYEFNGRIRPFSDLLCKAL-----HQISRDRIETQLKRWIAEEDPAIPLDDEQLALRFQNEGVVLSRRRIADVRKRLNIPNSYQRR---    
216 UniRef50_A7TBU8        Predicted protein n=1 Tax=N...   234     5e-60  1  30.9% 221:443 175:408     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ENSFDHFVKKHYKKLMEKFAISEEELKEVIQEISKLNPKPGSSYAGNnaEQIVPDFNIKIIDGNLDLTLNARNAPELHISKEYNNMLKGYQESKEKsfIKQKLDAAKWFIDAIRQRQQTLLITMNAIMHYQYDYFLTgeRKLKPMILKDIADQIGMDISTVSRVANSKYVATPYGTKLIKDFFSESMKNDQGEDVSTKEIKKILETVISEEDKRKPLTDDKLS----------------------------------    
217 UniRef50_B4U9T0        Sigma-54 DNA-binding domain...   227     1e-57  1  21.6%  75:473  35:395     --------------------------------------------------------------------------ATDLEQELKVEEELNPFLKLKVLKPPKKFFINKEDYTQNIAYSYSYKEHLIKAINE-ELEGIEKEIAKEIVYSLDSSGFIseTLEDIKNHFG---VDWDIVDDARAFVMEIEPIGHGALNPFEYMELQIRTYYKDKKEY-------IKYLKDLEERK------------KIPKEAMEFFSSLKKTP-IQIDKTNLLPSKVDIVIEIDQGEILYDIFDNY---VEISQE--NIEESLEDKELERYLK---QRARRFVEAINLRRKFMKELTKIVVERQQDFFLK-DKPLKSLMLKDVAGEFGISISTVSRLVNSKYVKTPKGVFKLRSFFVR----ESVSSKSQEEILNMIKKLIQNE--ETVYTDKDIEEILRNYGINISRRTVAKYRAKLGIGSSRKR----    
218 UniRef50_C4L5I1        Sigma-54 DNA-binding domain...   222     2e-56  1  22.5% 111:475  54:376     --------------------------------------------------------------------------------------------------------------DWIADAASSFEEKLFTQIHEGSGSESEKALRRQLVLLLDHRGLLPEANEVLAERLG---VDVTQVEQARQTLLFLEPTGIGSRTEREC---QYRhiEHEDPR-------VVDVFEAIESgsPQQMTTALAISNEELARLERIVATLPKRPLLY---EETGHVFPELEVRYEEGTLVTTWLSPELDETRVGND---------------------REAKWWMTSLSMRNETLREIWSVIESRQTEWL-QGELVLHPLTRRTVAQLIGKHESTVGRAIQGKFAKTESGIMEWRHFFVRSTS----RGHSPFMIKRALAELIQRE--KAPQSDQALANELIRYGYQVTRRTVTNYREELGFGNSRERER--    
219 UniRef50_C1TNP1        DNA-directed RNA polymerase...   216     2e-54  1  19.8%   2:475   7:391     -SPRLTQQVRTELLHLPVLIQNLRLLTMPVQELVDTAIGELADNPLYEVNPPRSWQESGILDD--------------------------------------------------LSEEPSLEENLIRQmqCRPLREERDSLPYELVRYLDHRGYLTDTQEAIADQL---ELTAERLDLLLERVRDiePPGLFARDLIHCLSLQLIRSGKEESDGA---KILEMAVDLLGKGDPKDAMERLGWSRSRFDRAMEELSHLDPAPGRR---TTAQVVIPELELYPDPDRPAVVL-AENLPRIYMTPL------TWEDDRVTSMKGRGLH----IIQSIARRNASKLSLAIEVAKKQKDYLMSREGAPYPMTMTEMAEKLNRSVSTVQRIASTTWAVTPVGTVPMDRLFSRPLKSR--PDMSVAQLRSRI-----EEASRKGMSDSELS-----RNLGVPRRTITWHR---------QRRR--    
220 UniRef50_B1YLE5        Sigma-54 DNA-binding domain...   209     2e-52  1  21.7%  57:475   2:375     --------------------------------------------------------EQRQEQAQRLVMSAAQLYQLTVLEETQAELEERLYRIIRRAGRSEHNGRKmpDLEQVADRIDSFEAELLQQIRLESVRQEIRYMAEQLIMYLDADGLLRTTDERLAVLLDSEE---PMIRQARQLLQQCEPTGIAARSEAECRLLHAIELEDDR---------LMDLLTALSDGQP------LKAVLDDETERRQMKQKMERLPKTPVLPVSTTMTIPEADISWSDDQ--VQIQWSSLP---IDTSWTD-----------------LAEAKPFLSAYERRRNTLRAILDVIVERQIRWF-KGELHLEPLTKKEVAKQTGYHPSTVGRAIVHKTIRTIHGTLELENFFVSKTQS----GTSSFLIKARIAQLIQE--ATSPLSDQQIVNRLDLEGIRVARRTVAKYRAGLYLTRSDMTKR--    
221 UniRef50_C6S982        RNA polymerase sigma-54 fac...   178     4e-43  1  28.1%   5:271   4:242     ----LGIKLKQTQQLNQRLQQSLRVLQMSGIELEREVENWLSDNPLLERKDT--------------------------------DEFSDAEFSHYTAPARQIGGDEGEDMLSNIAGEQDFKQYLHAQVCEHPLSDQESACVHILIDFLDEQGYLTDSIEDILDHTPLemLDEAMLKQALTALQKFDPAGVAAADLNESLILQIERLGECA-AKPAALHIVRNALDSIDGNRSQTLARIKktDSGTLEAALDLIASLNPFPAAGFASSTPTP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
222 UniRef50_UPI00006DCE7B hypothetical protein CdifQ_...   171     6e-41  1  25.3%   2:246   4:217     -NNSLELTQSQKLIMTTQLKQSLSILNMSKLELEEEIKREAENNPLVE-VEKSGEINWEEY--IKDMDRSRRLDRTEI----------------------SYNPDNEVNLENLVKYSSNLYEDLKFQISLYKLTDKELEVCEYIIDSLDEDGYLRTEEKVIVDTL---KIDEELFEKCLISVQQLEPSGVGARSLSECLMIQMASLGIYNEILE---EIVTKDLNLIANNKYKEISKKYNMSLQKM---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
223 UniRef50_A7HM99        Sigma-54 DNA-binding domain...   158     5e-37  1  20.8% 154:465   2:260     ---------------------------------------------------------------------------------------------------------------------------------------------------------LEAPIYLLFEKYGQREISI-EIEDSYYPIHE---------DLHQRLEMMIPFLGLEDEDEKIAEYVI-YNIDSKGKLRvqEVAQKFGVSVEKAREIIdeINQLS-------SEDEENYILPDVAIM---------------------PDYVEVRKIEVKDPV-------------VMKAIEMREETLRKICEIVRKINEPFLRGYRKYPHVVTMKYVANLVGLHVSTVSRAVNRKYVNTPIGVLPLRIFFGRLLNPK--------LVMNEIKELLKIDSK---LTDKQLVILLKSLGINISRRTVNKYRNLL------------    
224 UniRef50_A8F4Z2        Sigma-54 DNA-binding domain...   149     2e-34  1  22.3% 153:462  32:305     --------------------------------------------------------------------------------------------------------------------------------------------------------YLQNSFSGVSLDVQIPEKNESFVETVVDY----------EKSLPEEIMENIIFANLDDETEKVAEYI-AYNLDNKGKmsVQEICEKFGVSEQIVKRAIDAIRelDGKVAG--YGDASIYVEPDIIIT-EDLSVSVRSFEMKIPR--------------------NATKTQLKIISFLNEALNHRKELLLFLGKTLLKENALFILGKSTYPKKTKMTDIANTMNISISTVSKAISGKYVKTPFRIFELKTFFGRHVAGD--------YLTAEIAKIILE--KGKSITDREITIILNSQGIEVSRRTVNNYR---------------    
225 UniRef50_B5Y8H8        DNA-directed RNA polymerase...   132     3e-29  1  16.6%  92:464  19:307     -------------------------------------------------------------------------------------------FTEFLVRYGDFGPEELVEENISSRQGETiwDMVEAQVDML-FDDEELNIANELLGSLDHLGYLGIDLSDLAKQLKVNEEYVDQVRK--KLMREVEPFGLGSVSQRE----------------------------------FKQLLKELNLDSRD-------------HP-IDLPEERLRVTTPDFALELVDGKLEV----------NVSEKYEYLIQNTQG----------------IPRMveYRKDLIMRLANFLVQH------CGEKIlkPctLDHAAQELGVSKSTVSRLVRSKAFTFGGRVYPVEHFFGRSVK-----GVPQEELMLEIIDILKSMPTA---TDAQVSQLLrrRGWKFSRRTVNKYRHM-------------    
226 UniRef50_D0R1X8        Putative uncharacterized pr...   120     1e-25  1  19.2%   1:229   1:174     MSLKVQEKLVTRLFLSTKLKQNLRILSYNAHDLSIVIQEFAQENPFVELKNP--------------------------------------------------SKELQNLDWIQDNETENLIDHLLSQVRISDWSNKSKRVVIFLIYQLDNDGYLRKSLENLKSKV---IFSLQELNAGKDKLQKLDPAGIGAKDLNECLLLQARDKKDFNSIE---ISLLEKhlEVLAD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
227 UniRef50_D0R1X9        Putative uncharacterized pr...   116     3e-24  1  20.8% 241:394   1:156     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNMKKIITALKAIQTLNPAPASEYegEPTQYLIPGLKFYFEDGKLLISSARSNLPEMIFDDEKFVELQKDSEIKDKDYFIKQKKDFTDLHYAIRQREETLLNLGKFLGRRQEKYLSsnEQDLVSIKLEDAATELNLAISTISRAIKDKYVEVPR-----------------------------------------------------------------------------------    
228 UniRef50_B1CB69        Putative uncharacterized pr...   111     5e-23  1  20.0%   1:195  10:171     MDIKQEHNISQVQTLSQAQVMSLNILSMDSLELNEFLYKEYLENPLLE-------------------------NKCENNRDITLDIKNMDI-----PSKRQHSKDDIKYLETPNTDEINIKHYILYQLNYDDYSKNDLVIMEFLIDCLDNNGYFNYELTEISEI---SDYNIGDIEKCINVLKNLQPYGIFSKDL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
229 UniRef50_UPI0001912E87 hypothetical protein Salmon...   100     1e-19  1  86.7%    1:75    1:75     MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQTDLHDEIDTQQPQDDDPLDTADALEQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
230 UniRef50_C5V070        Putative uncharacterized pr...    99     3e-19  1  18.0% 291:473 102:286     --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSYVREYRFDEEGVSLMMSRPdaELAGVLRR--------LRLINTRNRLTHALMQAVLVSQAAYLRSGQaaLLPMTQAEISARLRldPGRISRLVRVLSIALPNgtVPMGGLF------PKPRQVHCHFVDHVIKmwMLQEELREPLTDGAIVAILeeYGLRLLRRTVANIRHDLAIPDYRSR----    
231 UniRef50_C6I101        Putative uncharacterized pr...    98     8e-19  1  21.9% 291:468  72:263     --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEGHPEIFWhrEYRMDDAVIDHMRDHEEIGEDLGRIVRRLRLVNSRNRLTDHIVRFILHVQAGYLETGdlQLRPLSYVRLSEKlgIDSTRISRILRRFPLVFSDGTieLSEL-CPKIRATCCHFV-NDVIKSE-KILIQEGSIQGPLSDSEIARRVEdgTIIISRRTVAHIRRTLGIP---------    
232 UniRef50_B5SFM8        Putative rna polymerase sig...    95     5e-18  1  42.3%   1:111   1:111     MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARIGADGSVSALQSNSATPPPTESPPPAANGSDHADTAEASYENGSDFDSDFLE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
233 UniRef50_A8ESG9        Putative uncharacterized pr...    88     1e-15  1  16.3% 317:469  81:229     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EYKKEIKNNYHLKLLNINIKHETLFNLITMLFSSQKLFLDTGhlDRKVFIETYVKEYNslDLSVLSKILNNTHYEQDGYIYKLSHLFPKKT------FIYSLYIKILLSTKIDLKN------DLEIAKQLFeyNVKISRRTVCDIRNKYLIPN--------    
234 UniRef50_D0R1Y0        Putative uncharacterized pr...    69     3e-10  1  37.7% 413:473    8:68     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNLTQNQLERMLKDFIKLEDPQKPLSDEKLVNKFKEKEISISRRIISKYRKKLGIKNSYQR----    
235 UniRef50_Q18CC4        Putative transcription anti...    64     1e-08  1  33.3% 421:477    2:53     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RQRIKNLIENEDKKNPLTDEAISSRL-----NIRREDVTFLRNELKIEDSRQRRKVV    
236 UniRef50_B0K7D9        PTS system transcriptional ...    63     2e-08  1  25.9% 422:475    3:51     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRIFEIIQKEDKKNPLTDDQIASIL-----NIKREDVTQFRLKNNIPDSRERRK--    
237 UniRef50_A6LPX9        Sigma-54 factor, interactio...    61     1e-07  1  29.1% 421:475    1:50     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQRLIELINSEDKKNPYTDQELAEFLS-----IPRLKVIQKRNELNIPDSRDRRK--    
238 UniRef50_D0GPK3        Transcriptional regulatory ...    61     1e-07  1  26.9% 422:473    5:51     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EMIEEIIKKEDKKSPLTDEEISEKLG-----ISREIVTKIRNEKEIPNSRDR----    
239 UniRef50_A6LWC3        Sigma-54 factor, interactio...    59     4e-07  1  28.6% 420:475    2:52     -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LENKILDLIENEDKRKPLTDSDIAKL-----VNTTREYITQFRTEKNINNSRQRKE--    
240 UniRef50_A6LQU8        Sigma-54 factor, interactio...    59     5e-07  1  29.1% 420:474    3:52     -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LENKLINIINTENKKNPLTDVQMAKFLG-----VARESITNLRKELNIANSRQRR---    
241 UniRef50_UPI0001854675 RNA polymerase factor sigma...    58     1e-06  1  27.8% 149:220    1:70     ----------------------------------------------------------------------------------------------------------------------------------------------------NNEGYFEENIEERAKILG---VESEVYEKVRKRFSYLNPAGIGARDVKEGFLFQLESRELdnKLYEETRKII-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
242 UniRef50_Q185K2        Putative sigma-54 interacti...    57     2e-06  1  25.5% 421:475    6:55     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MDKILREIQREDKKNPYTDQELAEML-----NVARSEVISVRKKNNILDSRERRK--    
243 UniRef50_B6FWC4        Putative uncharacterized pr...    56     2e-06  1  21.8% 421:475    1:50     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKKILLEIQNEDKKNPYTDKELSEILG-----ISRGDIVQFRKINNIPNSRDRRK--    
244 UniRef50_Q92ZL5        Putative uncharacterized pr...    55     6e-06  1  45.2% 437:467    2:32     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLDDDIVDVLKKTGVDIARRTVAKYRGAMNI----------    
245 UniRef50_B8D051        Transcriptional regulator, ...    47     0.002  1  44.0% 364:388    2:26     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PLTLKDIAKIAGVAESTVSRAINNK-----------------------------------------------------------------------------------------    
246 UniRef50_B3N145        GF15945 n=1 Tax=Drosophila ...    46     0.003  1  15.4%  13:148  10:150     ------------QILSVQVQNAIRmlQMTSHDLRqeLEEQLMDNNFLLDEMRRRGpeTGELEWEDDPDGEEDFERSCRDVALRIETITEELRATDRLLERTRLDLEKNK-EVLIVYEEELQRHL--QL------TRILVVLQYILEFI-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
247 UniRef50_B4RR56        Putative RNA polymerase sig...    46     0.003  1  31.4%    5:39   44:78     ----IGIKLKQTQQLDQRLQQSLRVLQMPGIELEREVEN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
248 UniRef50_B8IH39        Transcriptional regulator, ...    44     0.013  1  30.8% 336:387 150:200     -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RRSALERVAAFLAEIER---RSGEafDLPMTRRDIADYLGLTIETVSRAVSQ------------------------------------------------------------------------------------------    
249 UniRef50_B5H8Z9        Transcriptional regulator n...    44     0.017  1  16.2% 111:283  26:197     --------------------------------------------------------------------------------------------------------------GPPEEQQPAPAERVLALLGGHRLSPGQRRIAQYIIDHLTEAAFL--SITDLAERVGVSQPSVTRFATSLGY--------SGYPALRE--ALQPIALSAVAGSPETRAEIRRNELQAAVDAEIQNL-ENLRRVLADTDRVLGIGRELALspgLRISVSLAEyiHPDVRLVTRGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
250 UniRef50_UPI0001C35EE1 transcriptional regulator, ...    43     0.018  1  31.0% 365:393    6:34     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTIKDVAEACGVSIATVSRVLNDNYYVTP------------------------------------------------------------------------------------    
251 UniRef50_B1L9I7        Transcriptional regulator, ...    43     0.019  1  40.7% 362:388    1:27     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKKATLKDIAEYFGVSISTVSRALSGK-----------------------------------------------------------------------------------------    
252 UniRef50_Q16925        Transposase n=3 Tax=Anophel...    43     0.020  1  21.8% 366:475  24:121     -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SYTEIAMLTNINRNTVARVIQ-------RYKYEGR---VSNLPRKGRPSVCTDRMRRAIKRLVDAEPE---ISAQSVAIVLNErgIAISCETVRRYIHKFGYKAYNRRKK--    
253 UniRef50_Q1WRA6        Transposase ISLasa15, IS3 f...    43     0.031  1  30.6% 419:467   29:75     ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KIKDLIMEI--WEESQHLYGAPKITAKLRKMGIQISERTVGKYMKELKI----------    
254 UniRef50_C6Y3T7        Periplasmic binding protein...    42     0.055  1  41.9% 364:394    4:34     ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PATLKDIAIALGLSTSTVSRALRDTYEISPK-----------------------------------------------------------------------------------    
255 UniRef50_UPI0001854ADA RNA polymerase factor sigma...    41     0.075  1  19.1%    5:72    4:71     ----LRANLSPKNKLNATLKGWLPILQSELEDLEEVLKQNALDNPLIKIENKRIKNFSDRFSAKKSSDHLEN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------    
    consensus/100%                                                                                      .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................    
    consensus/90%                                                                                       .......................................................................................................................................................................................................................................................................................................................................................................................................................................h..hh.........tD..l...h......h.pt.l.phR...............    
    consensus/80%                                                                                       ..............ht......hthLths..ph...l.....tNshh.......................................................................sh.t.l..ph...........hh..hht.ls.tGah......h.............h..hh.hl.thcP.Glhu.sht-sh.hQh...............hh.t.h..h.ttt...l.t.hth..tth.thht.ltthpshPs..h..t....h.P-hhh...ttth.h.h.......h.hp..h...............htt.htth..hhpslp.R.tTl.plht.lht.Q..ah..t...htsh.hpplAt.hthp.STlSRhhttKhh.s..Ghh.hc.hFs..h........s...lpthltthlttEs.ttshoDptlsthltttsh.luRRTlsKYRp.htl.ss..R...     
    consensus/70%                                                                                       ...t...p.t.p..hs.ph.pslplLphs..-Ltt.lpp.h.pNPhl-......................................................................sl.phLh.Qlt...hs.t.h.hs.hllttlsppGalt.s.tplht.h....hp.tthtthlthlpph-PsGlsApsltEsLhlQltt....t.....h.tll.p.hp.ltptphttlhp.hths.ppltthht.lppLpPtPu.thttt.sthl.PDlhl...tsth.l.hstt.hPpl.lst.a.p.htt.tttt.tthhppphppAthhhpslppRtpTlhplsp.llphQttFh.tG.thhpPhhhpplAptlshc.STlSRshssKahtsshGhh.h+.FFsttht..tttthosttl+thlppllttEs.ppPhSDpplsphLtppGltluRRTVuKYRpthtIssut.R+..     

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