Phyre 2 Results for P25746

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Email | l.a.kelley@imperial.ac.uk
Description | P25746
Date | Thu Jan 5 11:42:34 GMT 2012
Unique Job ID | fc1afae978af8daf

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1sdia_
Top template information
Fold:YcfC-like Superfamily:YcfC-like Family:YcfC-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 100%
212 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | K | N | Y | Y | D | I | T | L | A | L | A | G | I | C | Q | S | A | R | L | V | Q | Q | L | A | H | Q | G | H | C | D | A | D | A | L | H | V | S | L | N | S | I | I | D | M | N | P | S | S | T | L | A | V | F | G | G | S | E | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | N | L | R | V | G | L | E | T | L | L | G | V | L | N | A | S | S | R | Q | G | L | N | A | E | L | T | R | Y | T | L | S | L | M | V | L | E | R | K | L | S | S | A | K | G | A | L | D | T | L | G | N | R | I | N | G | L | Q | R | Q | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | E | H | F | D | L | Q | S | E | T | L | M | S | A | M | A | A | I | Y | V | D | V | I | S | P | L | G | P | R | I | Q | V | T | G | S | P | A | V | L | Q | S | P | Q | V | Q | A | K | V | R | A | T | L | L | A | G | I | R | A | A | V | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  | ? |  |  |  |  | ? |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | .
Sequence |  | W | H | Q | V | G | G | G | R | L | Q | L | M | F | S | R | N | R | L | T | T | Q | A | K | Q | I | L | A | H | L | T | P | E | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1sdia_ |

### PDB 1sdi chain A

Region: 2 - 213
Aligned: 212
Modelled: 212
Confidence: 100.0%
Identity: 100%
Fold: YcfC-like
Superfamily: YcfC-like
Family: YcfC-like

Phyre2
2 |
| c2xr1A_ |

### PDB 2xr1 chain A

Region: 127 - 167
Aligned: 41
Modelled: 41
Confidence: 39.1%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd
PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei

Phyre2
3 |
| c2gejA_ |

### PDB 2gej chain A

Region: 97 - 152
Aligned: 50
Modelled: 51
Confidence: 33.1%
Identity: 12%
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man

Phyre2
4 |
| c2ycbA_ |

### PDB 2ycb chain A

Region: 127 - 167
Aligned: 41
Modelled: 41
Confidence: 30.0%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor;
PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus

Phyre2
5 |
| c2rdcA_ |

### PDB 2rdc chain A

Region: 86 - 178
Aligned: 87
Modelled: 93
Confidence: 27.0%
Identity: 22%
PDB header:lipid binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative lipid binding protein (gsu0061) from2 geobacter sulfurreducens pca at 1.80 a resolution

Phyre2
6 |
| c3af5A_ |

### PDB 3af5 chain A

Region: 139 - 167
Aligned: 29
Modelled: 29
Confidence: 22.9%
Identity: 34%
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein ph1404;
PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii

Phyre2
7 |
| d2fgea1 |

### PDB 2fge chain A domain 1

Region: 59 - 159
Aligned: 99
Modelled: 101
Confidence: 21.5%
Identity: 17%
Fold: LuxS/MPP-like metallohydrolase
Superfamily: LuxS/MPP-like metallohydrolase
Family: MPP-like

Phyre2
8 |
| c2k1vB_ |

### PDB 2k1v chain B

Region: 175 - 189
Aligned: 13
Modelled: 15
Confidence: 15.7%
Identity: 46%
PDB header:hormone
Chain: B: PDB Molecule:relaxin-3;
PDBTitle: r3/i5 relaxin chimera

Phyre2
9 |
| c2rpaA_ |

### PDB 2rpa chain A

Region: 9 - 33
Aligned: 25
Modelled: 25
Confidence: 15.1%
Identity: 28%
PDB header:hydrolase
Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a1;
PDBTitle: the solution structure of n-terminal domain of microtubule severing2 enzyme

Phyre2
10 |
| c3fxdD_ |

### PDB 3fxd chain D

Region: 134 - 144
Aligned: 11
Modelled: 11
Confidence: 14.0%
Identity: 36%
PDB header:unknown function
Chain: D: PDB Molecule:protein icmr;
PDBTitle: crystal structure of interacting domains of icmr and icmq

Phyre2
11 |
| c3cx3A_ |

### PDB 3cx3 chain A

Region: 104 - 157
Aligned: 54
Modelled: 54
Confidence: 11.7%
Identity: 7%
PDB header:metal binding protein
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: crystal structure analysis of the streptococcus pneumoniae2 adcaii protein

Phyre2
12 |
| c3mzkC_ |

### PDB 3mzk chain C

Region: 160 - 193
Aligned: 34
Modelled: 34
Confidence: 11.7%
Identity: 18%
PDB header:protein transport
Chain: C: PDB Molecule:protein transport protein sec16;
PDBTitle: sec13/sec16 complex, s.cerevisiae

Phyre2
13 |
| c2rmsB_ |

### PDB 2rms chain B

Region: 9 - 17
Aligned: 9
Modelled: 9
Confidence: 11.6%
Identity: 56%
PDB header:transcription
Chain: B: PDB Molecule:msin3a-binding protein;
PDBTitle: solution structure of the msin3a pah1-sap25 sid complex

Phyre2
14 |
| c2xdjF_ |

### PDB 2xdj chain F

Region: 92 - 140
Aligned: 49
Modelled: 48
Confidence: 10.4%
Identity: 22%
PDB header:unknown function
Chain: F: PDB Molecule:uncharacterized protein ybgf;
PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf

Phyre2
15 |
| c2h8bB_ |

### PDB 2h8b chain B

Region: 180 - 189
Aligned: 10
Modelled: 10
Confidence: 9.8%
Identity: 40%
PDB header:hormone/growth factor
Chain: B: PDB Molecule:insulin-like 3;
PDBTitle: solution structure of insl3

Phyre2
16 |
| c2ogwB_ |

### PDB 2ogw chain B

Region: 103 - 157
Aligned: 55
Modelled: 55
Confidence: 9.0%
Identity: 13%
PDB header:transport protein
Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua
PDBTitle: structure of abc type zinc transporter from e. coli

Phyre2
17 |
| c2r5uD_ |

### PDB 2r5u chain D

Region: 80 - 140
Aligned: 50
Modelled: 61
Confidence: 8.9%
Identity: 20%
PDB header:hydrolase
Chain: D: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the n-terminal domain of dnab helicase from2 mycobacterium tuberculosis

Phyre2
18 |
| c2jufA_ |

### PDB 2juf chain A

Region: 179 - 189
Aligned: 11
Modelled: 11
Confidence: 8.5%
Identity: 27%
PDB header:gene regulation
Chain: A: PDB Molecule:p53-associated parkin-like cytoplasmic protein;
PDBTitle: nmr solution structure of parc cph domain. nesg target2 hr3443b/sgc-toronto

Phyre2
19 |
| d1qi9a_ |

### PDB 1qi9 chain A

Region: 27 - 54
Aligned: 28
Modelled: 28
Confidence: 8.3%
Identity: 29%
Fold: Acid phosphatase/Vanadium-dependent haloperoxidase
Superfamily: Acid phosphatase/Vanadium-dependent haloperoxidase
Family: Haloperoxidase (bromoperoxidase)

Phyre2
20 |
| c2fhdA_ |

### PDB 2fhd chain A

Region: 178 - 187
Aligned: 10
Modelled: 10
Confidence: 8.3%
Identity: 20%
PDB header:cell cycle
Chain: A: PDB Molecule:dna repair protein rhp9/crb2;
PDBTitle: crystal structure of crb2 tandem tudor domains

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1sdia_ |
|  | 100.0 | 100 | Fold:YcfC-like Superfamily:YcfC-like Family:YcfC-like
2 | c2xr1A_ |
|  | 39.1 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei
3 | c2gejA_ |
|  | 33.1 | 12 | PDB header:transferase Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima); PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man
4 | c2ycbA_ |
|  | 30.0 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor; PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus
5 | c2rdcA_ |
|  | 27.0 | 22 | PDB header:lipid binding protein Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative lipid binding protein (gsu0061) from2 geobacter sulfurreducens pca at 1.80 a resolution
6 | c3af5A_ |
|  | 22.9 | 34 | PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii
7 | d2fgea1 |
|  | 21.5 | 17 | Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:MPP-like
8 | c2k1vB_ |
|  | 15.7 | 46 | PDB header:hormone Chain: B: PDB Molecule:relaxin-3; PDBTitle: r3/i5 relaxin chimera
9 | c2rpaA_ |
|  | 15.1 | 28 | PDB header:hydrolase Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a1; PDBTitle: the solution structure of n-terminal domain of microtubule severing2 enzyme
10 | c3fxdD_ |
|  | 14.0 | 36 | PDB header:unknown function Chain: D: PDB Molecule:protein icmr; PDBTitle: crystal structure of interacting domains of icmr and icmq
11 | c3cx3A_ |
|  | 11.7 | 7 | PDB header:metal binding protein Chain: A: PDB Molecule:lipoprotein; PDBTitle: crystal structure analysis of the streptococcus pneumoniae2 adcaii protein
12 | c3mzkC_ |
|  | 11.7 | 18 | PDB header:protein transport Chain: C: PDB Molecule:protein transport protein sec16; PDBTitle: sec13/sec16 complex, s.cerevisiae
13 | c2rmsB_ |
|  | 11.6 | 56 | PDB header:transcription Chain: B: PDB Molecule:msin3a-binding protein; PDBTitle: solution structure of the msin3a pah1-sap25 sid complex
14 | c2xdjF_ |
|  | 10.4 | 22 | PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf
15 | c2h8bB_ |
|  | 9.8 | 40 | PDB header:hormone/growth factor Chain: B: PDB Molecule:insulin-like 3; PDBTitle: solution structure of insl3
16 | c2ogwB_ |
|  | 9.0 | 13 | PDB header:transport protein Chain: B: PDB Molecule:high-affinity zinc uptake system protein znua PDBTitle: structure of abc type zinc transporter from e. coli
17 | c2r5uD_ |
|  | 8.9 | 20 | PDB header:hydrolase Chain: D: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the n-terminal domain of dnab helicase from2 mycobacterium tuberculosis
18 | c2jufA_ |
|  | 8.5 | 27 | PDB header:gene regulation Chain: A: PDB Molecule:p53-associated parkin-like cytoplasmic protein; PDBTitle: nmr solution structure of parc cph domain. nesg target2 hr3443b/sgc-toronto
19 | d1qi9a_ |
|  | 8.3 | 29 | Fold:Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase Family:Haloperoxidase (bromoperoxidase)
20 | c2fhdA_ |
|  | 8.3 | 20 | PDB header:cell cycle Chain: A: PDB Molecule:dna repair protein rhp9/crb2; PDBTitle: crystal structure of crb2 tandem tudor domains
21 | c3h25A_ |
| not modelled | 8.2 | 32 | PDB header:replication/dna Chain: A: PDB Molecule:replication protein b; PDBTitle: crystal structure of the catalytic domain of primase repb' in complex2 with initiator dna
22 | c3hgkE_ |
| not modelled | 8.2 | 20 | PDB header:transferase Chain: E: PDB Molecule:effector protein hopab2; PDBTitle: crystal structure of effect protein avrptob complexed with2 kinase pto
23 | d2jnga1 |
| not modelled | 7.9 | 27 | Fold:SH3-like barrel Superfamily:Tudor/PWWP/MBT Family:CPH domain
24 | d1qhba_ |
| not modelled | 7.7 | 18 | Fold:Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase Family:Haloperoxidase (bromoperoxidase)
25 | d1vkea_ |
| not modelled | 7.6 | 13 | Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like
26 | d1up8a_ |
| not modelled | 7.5 | 14 | Fold:Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase Family:Haloperoxidase (bromoperoxidase)
27 | c2o1eB_ |
| not modelled | 7.5 | 11 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ycdh; PDBTitle: crystal structure of the metal-dependent lipoprotein ycdh2 from bacillus subtilis, northeast structural genomics3 target sr583
28 | d1u7ka_ |
| not modelled | 7.2 | 33 | Fold:Retrovirus capsid protein, N-terminal core domain Superfamily:Retrovirus capsid protein, N-terminal core domain Family:Retrovirus capsid protein, N-terminal core domain
29 | d2jeka1 |
| not modelled | 7.1 | 20 | Fold:Rv1873-like Superfamily:Rv1873-like Family:Rv1873-like
30 | c1yv0T_ |
| not modelled | 7.0 | 27 | PDB header:contractile protein Chain: T: PDB Molecule:troponin t, fast skeletal muscle isoforms; PDBTitle: crystal structure of skeletal muscle troponin in the ca2+-2 free state
31 | c1xouA_ |
| not modelled | 7.0 | 24 | PDB header:structural protein/chaperone Chain: A: PDB Molecule:espa; PDBTitle: crystal structure of the cesa-espa complex
32 | d1xoua_ |
| not modelled | 7.0 | 24 | Fold:EspA/CesA-like Superfamily:EspA/CesA-like Family:EspA-like
33 | d2v7qi1 |
| not modelled | 6.7 | 60 | Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Epsilon subunit of mitochondrial F1F0-ATP synthase Family:Epsilon subunit of mitochondrial F1F0-ATP synthase
34 | c2w9zA_ |
| not modelled | 6.5 | 17 | PDB header:transferase Chain: A: PDB Molecule:g1/s-specific cyclin-d1; PDBTitle: crystal structure of cdk4 in complex with a d-type cyclin
35 | c3nrhA_ |
| not modelled | 6.4 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bf1032; PDBTitle: crystal structure of protein bf1032 from bacteroides fragilis,2 northeast structural genomics consortium target bfr309
36 | d1jwea_ |
| not modelled | 6.2 | 18 | Fold:N-terminal domain of DnaB helicase Superfamily:N-terminal domain of DnaB helicase Family:N-terminal domain of DnaB helicase
37 | c1cosA_ |
| not modelled | 6.2 | 29 | PDB header:alpha-helical bundle Chain: A: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle
38 | c1cosB_ |
| not modelled | 6.2 | 29 | PDB header:alpha-helical bundle Chain: B: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle
39 | c1cosC_ |
| not modelled | 6.2 | 29 | PDB header:alpha-helical bundle Chain: C: PDB Molecule:coiled serine; PDBTitle: crystal structure of a synthetic triple-stranded alpha-2 helical bundle
40 | c3imoC_ |
| not modelled | 6.1 | 21 | PDB header:unknown function Chain: C: PDB Molecule:integron cassette protein; PDBTitle: structure from the mobile metagenome of vibrio cholerae.2 integron cassette protein vch_cass14
41 | d1hula_ |
| not modelled | 5.7 | 19 | Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Short-chain cytokines
42 | c2f59B_ |
| not modelled | 5.5 | 20 | PDB header:transferase Chain: B: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh1 from brucella abortus (gene bruab1_0785,2 swiss-prot entry q57dy1) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione
43 | d1b8za_ |
| not modelled | 5.5 | 14 | Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein
44 | d2bs2b2 |
| not modelled | 5.4 | 24 | Fold:beta-Grasp (ubiquitin-like) Superfamily:2Fe-2S ferredoxin-like Family:2Fe-2S ferredoxin domains from multidomain proteins
45 | c3dlaD_ |
| not modelled | 5.3 | 19 | PDB header:ligase Chain: D: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: x-ray crystal structure of glutamine-dependent nad+ synthetase from2 mycobacterium tuberculosis bound to naad+ and don
46 | c3c4vB_ |
| not modelled | 5.2 | 14 | PDB header:transferase Chain: B: PDB Molecule:predicted glycosyltransferases; PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.
47 | c3lk2B_ |
| not modelled | 5.0 | 18 | PDB header:protein binding Chain: B: PDB Molecule:f-actin-capping protein subunit beta isoforms 1 and 2; PDBTitle: crystal structure of capz bound to the uncapping motif from carmil

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0