Phyre 2 alignment of P52095 with d2a5yb1

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Job Description | P52095
Confidence | 22.20% | Date | Thu Jan 5 12:05:15 GMT 2012
Rank | 459 | Aligned Residues | 43
% Identity | 37% | Template | d2a5yb1
SCOP info | DNA/RNA-binding 3-helical bundle | "Winged helix" DNA-binding domain | CED-4 C-terminal domain-like
Resolution | 2.60

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 643 | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | V | S | A | N | M | I | L | P | Y | P | P | G | V | P | L | . | . | . | . | . | . | . | L | M | P | G | E | M | L | T | K | E | S | R | T | V | L | D | F | L | L | M | L | C | S | V | G | Q | H | Y | P | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | S | A | L | A | F | A | V | V | M | P | P | G | V | D | I | P | V | K | L | W | S | C | V | I | P | V | E | Q | L | D | D | E | . | . | . | V | A | D | R | L | K | R | L | S | K | R | G | A | L | L | S | G
Template Known Secondary structure |  |  |  |  | T | T | G | G | G | S | S |  | T | T |  |  |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  | T |  |  | . | . | . |  |  |  |  |  |  |  | T | T | T | S | S | S |  | S |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . |  |  |  | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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