Phyre 2 Results for P52095

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Email | l.a.kelley@imperial.ac.uk
Description | P52095
Date | Thu Jan 5 12:05:15 GMT 2012
Unique Job ID | fbc12e807d7c2635

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3n75E_
Top template information
PDB header:lyase Chain: E: PDB Molecule:lysine decarboxylase, inducible; PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
709 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | I | I | A | I | M | G | P | H | G | V | F | Y | K | D | E | P | I | K | E | L | E | S | A | L | V | A | Q | G | F | Q | I | I | W | P | Q | N | S | V | D | L | L | K | F | I | E | H | N | P | R | I | C | G | V | I | F | D | W | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | E | Y | S | L | D | L | C | S | D | I | N | Q | L | N | E | Y | L | P | L | Y | A | F | I | N | T | H | S | T | M | D | V | S | V | Q | D | M | R | M | A | L | W | F | F | E | Y | A | L | G | Q | A | E | D | I | A | I | R | M | R | Q | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | T | D | E | Y | L | D | N | I | T | P | P | F | T | K | A | L | F | T | Y | V | K | E | R | K | Y | T | F | C | T | P | G | H | M | G | G | T | A | Y | Q | K | S | P | V | G | C | L | F | Y | D | F | F | G | G | N | T | L | K | A | D | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | S | I | S | V | T | E | L | G | S | L | L | D | H | T | G | P | H | L | E | A | E | E | Y | I | A | R | T | F | G | A | E | Q | S | Y | I | V | T | N | G | T | S | T | S | N | K | I | V | G | M | Y | A | A | P | S | G | S | T | L | L | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | D | R | N | C | H | K | S | L | A | H | L | L | M | M | N | D | V | V | P | V | W | L | K | P | T | R | N | A | L | G | I | L | G | G | I | P | R | R | E | F | T | R | D | S | I | E | E | K | V | A | A | T | T | Q | A | Q | W | P | V | H
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | A | V | I | T | N | S | T | Y | D | G | L | L | Y | N | T | D | W | I | K | Q | T | L | D | V | P | S | I | H | F | D | S | A | W | V | P | Y | T | H | F | H | P | I | Y | Q | G | K | S | G | M | S | G | E | R | V | A | G | K | V | I | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | E | T | Q | S | T | H | K | M | L | A | A | L | S | Q | A | S | L | I | H | I | K | G | E | Y | D | E | E | A | F | N | E | A | F | M | M | H | T | T | T | S | P | S | Y | P | I | V | A | S | V | E | T | A | A | A | M | L | R | G | N | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | G | K | R | L | I | N | R | S | V | E | R | A | L | H | F | R | K | E | V | Q | R | L | R | E | E | S | D | G | W | F | F | D | I | W | Q | P | P | Q | V | D | E | A | E | C | W | P | V | A | P | G | E | Q | W | H | G | F | N | D | A | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  | ? | ? | ? |  | ? | ? |  | ? |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540
Sequence |  | A | D | H | M | F | L | D | P | V | K | V | T | I | L | T | P | G | M | D | E | Q | G | N | M | S | E | E | G | I | P | A | A | L | V | A | K | F | L | D | E | R | G | I | V | V | E | K | T | G | P | Y | N | L | L | F | L | F | S | I | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600
Sequence |  | I | D | K | T | K | A | M | G | L | L | R | G | L | T | E | F | K | R | S | Y | D | L | N | L | R | I | K | N | M | L | P | D | L | Y | A | E | D | P | D | F | Y | R | N | M | R | I | Q | D | L | A | Q | G | I | H | K | L | I | R | K | H
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  | ? |  | ? | ? |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660
Sequence |  | D | L | P | G | L | M | L | R | A | F | D | T | L | P | E | M | I | M | T | P | H | Q | A | W | Q | R | Q | I | K | G | E | V | E | T | I | A | L | E | Q | L | V | G | R | V | S | A | N | M | I | L | P | Y | P | P | G | V | P | L | L | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | .
Sequence |  | P | G | E | M | L | T | K | E | S | R | T | V | L | D | F | L | L | M | L | C | S | V | G | Q | H | Y | P | G | F | E | T | D | I | H | G | A | K | Q | D | E | D | G | V | Y | R | V | R | V | L | K | M | A | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3n75E_ |

### PDB 3n75 chain E

Region: 1 - 710
Aligned: 709
Modelled: 710
Confidence: 100.0%
Identity: 69%
PDB header:lyase
Chain: E: PDB Molecule:lysine decarboxylase, inducible;
PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci

Phyre2
2 |
| c2vycA_ |

### PDB 2vyc chain A

Region: 17 - 710
Aligned: 689
Modelled: 694
Confidence: 100.0%
Identity: 36%
PDB header:lyase
Chain: A: PDB Molecule:biodegradative arginine decarboxylase;
PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli

Phyre2
3 |
| c1c4kA_ |

### PDB 1c4k chain A

Region: 44 - 710
Aligned: 656
Modelled: 662
Confidence: 100.0%
Identity: 30%
PDB header:lyase
Chain: A: PDB Molecule:protein (ornithine decarboxylase);
PDBTitle: ornithine decarboxylase mutant (gly121tyr)

Phyre2
4 |
| d1c4ka2 |

### PDB 1c4k chain A domain 2

Region: 130 - 563
Aligned: 431
Modelled: 434
Confidence: 100.0%
Identity: 34%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: Ornithine decarboxylase major domain

Phyre2
5 |
| c2x3lA_ |

### PDB 2x3l chain A

Region: 131 - 688
Aligned: 406
Modelled: 440
Confidence: 100.0%
Identity: 23%
PDB header:lyase
Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein;
PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus

Phyre2
6 |
| d1rv3a_ |

### PDB 1rv3 chain A

Region: 198 - 657
Aligned: 355
Modelled: 371
Confidence: 100.0%
Identity: 16%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
7 |
| d1bj4a_ |

### PDB 1bj4 chain A

Region: 200 - 656
Aligned: 351
Modelled: 372
Confidence: 100.0%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
8 |
| d1ejia_ |

### PDB 1eji chain A

Region: 198 - 657
Aligned: 355
Modelled: 369
Confidence: 100.0%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
9 |
| d2z67a1 |

### PDB 2z67 chain A domain 1

Region: 201 - 556
Aligned: 309
Modelled: 328
Confidence: 100.0%
Identity: 12%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: SepSecS-like

Phyre2
10 |
| c2a7vA_ |

### PDB 2a7v chain A

Region: 200 - 656
Aligned: 319
Modelled: 334
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: human mitochondrial serine hydroxymethyltransferase 2

Phyre2
11 |
| d2a7va1 |

### PDB 2a7v chain A domain 1

Region: 200 - 656
Aligned: 319
Modelled: 326
Confidence: 100.0%
Identity: 17%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
12 |
| d1c4ka3 |

### PDB 1c4k chain A domain 3

Region: 564 - 710
Aligned: 144
Modelled: 147
Confidence: 100.0%
Identity: 28%
Fold: Ornithine decarboxylase C-terminal domain
Superfamily: Ornithine decarboxylase C-terminal domain
Family: Ornithine decarboxylase C-terminal domain

Phyre2
13 |
| c3h7fB_ |

### PDB 3h7f chain B

Region: 198 - 578
Aligned: 315
Modelled: 339
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase 1;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis

Phyre2
14 |
| c3hl2D_ |

### PDB 3hl2 chain D

Region: 196 - 562
Aligned: 314
Modelled: 329
Confidence: 100.0%
Identity: 13%
PDB header:transferase
Chain: D: PDB Molecule:o-phosphoseryl-trna(sec) selenium transferase;
PDBTitle: the crystal structure of the human sepsecs-trnasec complex

Phyre2
15 |
| d3bc8a1 |

### PDB 3bc8 chain A domain 1

Region: 198 - 565
Aligned: 314
Modelled: 330
Confidence: 100.0%
Identity: 13%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: SepSecS-like

Phyre2
16 |
| c3ecdC_ |

### PDB 3ecd chain C

Region: 196 - 572
Aligned: 291
Modelled: 326
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: C: PDB Molecule:serine hydroxymethyltransferase 2;
PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei

Phyre2
17 |
| c3n0lA_ |

### PDB 3n0l chain A

Region: 198 - 569
Aligned: 292
Modelled: 315
Confidence: 100.0%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni

Phyre2
18 |
| d1dfoa_ |

### PDB 1dfo chain A

Region: 196 - 574
Aligned: 314
Modelled: 335
Confidence: 99.9%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
19 |
| d1kl1a_ |

### PDB 1kl1 chain A

Region: 123 - 575
Aligned: 374
Modelled: 402
Confidence: 99.9%
Identity: 15%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
20 |
| d2e7ja1 |

### PDB 2e7j chain A domain 1

Region: 190 - 560
Aligned: 309
Modelled: 341
Confidence: 99.9%
Identity: 20%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: SepSecS-like

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3n75E_ |
|  | 100.0 | 69 | PDB header:lyase Chain: E: PDB Molecule:lysine decarboxylase, inducible; PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci
2 | c2vycA_ |
|  | 100.0 | 36 | PDB header:lyase Chain: A: PDB Molecule:biodegradative arginine decarboxylase; PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli
3 | c1c4kA_ |
|  | 100.0 | 30 | PDB header:lyase Chain: A: PDB Molecule:protein (ornithine decarboxylase); PDBTitle: ornithine decarboxylase mutant (gly121tyr)
4 | d1c4ka2 |
|  | 100.0 | 34 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Ornithine decarboxylase major domain
5 | c2x3lA_ |
|  | 100.0 | 23 | PDB header:lyase Chain: A: PDB Molecule:orn/lys/arg decarboxylase family protein; PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus
6 | d1rv3a_ |
|  | 100.0 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
7 | d1bj4a_ |
|  | 100.0 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
8 | d1ejia_ |
|  | 100.0 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
9 | d2z67a1 |
|  | 100.0 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SepSecS-like
10 | c2a7vA_ |
|  | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: human mitochondrial serine hydroxymethyltransferase 2
11 | d2a7va1 |
|  | 100.0 | 17 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
12 | d1c4ka3 |
|  | 100.0 | 28 | Fold:Ornithine decarboxylase C-terminal domain Superfamily:Ornithine decarboxylase C-terminal domain Family:Ornithine decarboxylase C-terminal domain
13 | c3h7fB_ |
|  | 100.0 | 14 | PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis
14 | c3hl2D_ |
|  | 100.0 | 13 | PDB header:transferase Chain: D: PDB Molecule:o-phosphoseryl-trna(sec) selenium transferase; PDBTitle: the crystal structure of the human sepsecs-trnasec complex
15 | d3bc8a1 |
|  | 100.0 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SepSecS-like
16 | c3ecdC_ |
|  | 100.0 | 18 | PDB header:transferase Chain: C: PDB Molecule:serine hydroxymethyltransferase 2; PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei
17 | c3n0lA_ |
|  | 100.0 | 14 | PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni
18 | d1dfoa_ |
|  | 99.9 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
19 | d1kl1a_ |
|  | 99.9 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
20 | d2e7ja1 |
|  | 99.9 | 20 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SepSecS-like
21 | c2dkjB_ |
| not modelled | 99.9 | 14 | PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
22 | c3mc6C_ |
| not modelled | 99.9 | 14 | PDB header:lyase Chain: C: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of scdpl1
23 | c3mafB_ |
| not modelled | 99.9 | 14 | PDB header:lyase Chain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form)
24 | d1o69a_ |
| not modelled | 99.9 | 11 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
25 | d1wyub1 |
| not modelled | 99.9 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Glycine dehydrogenase subunits (GDC-P)
26 | c3f9tB_ |
| not modelled | 99.9 | 16 | PDB header:lyase Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna; PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
27 | d1vjoa_ |
| not modelled | 99.9 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
28 | d1wyua1 |
| not modelled | 99.9 | 18 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Glycine dehydrogenase subunits (GDC-P)
29 | c3bcxA_ |
| not modelled | 99.9 | 13 | PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase
30 | c3e9kA_ |
| not modelled | 99.9 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:kynureninase; PDBTitle: crystal structure of homo sapiens kynureninase-3-hydroxyhippuric acid2 inhibitor complex
31 | c2w8wA_ |
| not modelled | 99.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser
32 | c2jisA_ |
| not modelled | 99.9 | 15 | PDB header:lyase Chain: A: PDB Molecule:cysteine sulfinic acid decarboxylase; PDBTitle: human cysteine sulfinic acid decarboxylase (csad) in2 complex with plp.
33 | c2hzpA_ |
| not modelled | 99.9 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:kynureninase; PDBTitle: crystal structure of homo sapiens kynureninase
34 | c3nnkC_ |
| not modelled | 99.9 | 15 | PDB header:transferase Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase; PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
35 | c3hbxB_ |
| not modelled | 99.9 | 16 | PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana
36 | c2po3B_ |
| not modelled | 99.9 | 16 | PDB header:transferase Chain: B: PDB Molecule:4-dehydrase; PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
37 | d1mdoa_ |
| not modelled | 99.9 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
38 | d1h0ca_ |
| not modelled | 99.9 | 17 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
39 | d1m6sa_ |
| not modelled | 99.9 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
40 | c3nysA_ |
| not modelled | 99.9 | 13 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase wbpe; PDBTitle: x-ray structure of the k185a mutant of wbpe (wlbe) from pseudomonas2 aeruginosa in complex with plp at 1.45 angstrom resolution
41 | d1js3a_ |
| not modelled | 99.9 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Pyridoxal-dependent decarboxylase
42 | c2ogeC_ |
| not modelled | 99.8 | 14 | PDB header:transferase Chain: C: PDB Molecule:transaminase; PDBTitle: x-ray structure of s. venezuelae desv in its internal2 aldimine form
43 | c2z9wA_ |
| not modelled | 99.8 | 13 | PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
44 | c2r0tA_ |
| not modelled | 99.8 | 16 | PDB header:transferase Chain: A: PDB Molecule:pyridoxamine 5-phosphate-dependent dehydrase; PDBTitle: crystal sructure of gdp-4-keto-6-deoxymannose-3-dehydratase2 with a trapped plp-glutamate geminal diamine
45 | d1fc4a_ |
| not modelled | 99.8 | 19 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
46 | c3uwcA_ |
| not modelled | 99.8 | 14 | PDB header:transferase Chain: A: PDB Molecule:nucleotide-sugar aminotransferase; PDBTitle: structure of an aminotransferase (degt-dnrj-eryc1-strs family) from2 coxiella burnetii in complex with pmp
47 | c3a2bA_ |
| not modelled | 99.8 | 15 | PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
48 | c3islA_ |
| not modelled | 99.8 | 14 | PDB header:transferase Chain: A: PDB Molecule:purine catabolism protein pucg; PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
49 | d1bs0a_ |
| not modelled | 99.8 | 18 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
50 | c3hqtB_ |
| not modelled | 99.8 | 14 | PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa
51 | d1svva_ |
| not modelled | 99.8 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
52 | c2dr1A_ |
| not modelled | 99.8 | 14 | PDB header:transferase Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
53 | c3k40B_ |
| not modelled | 99.8 | 13 | PDB header:lyase Chain: B: PDB Molecule:aromatic-l-amino-acid decarboxylase; PDBTitle: crystal structure of drosophila 3,4-dihydroxyphenylalanine2 decarboxylase
54 | c3frkB_ |
| not modelled | 99.8 | 14 | PDB header:transferase Chain: B: PDB Molecule:qdtb; PDBTitle: x-ray structure of qdtb from t. thermosaccharolyticum in2 complex with a plp:tdp-3-aminoquinovose aldimine
55 | c2c7tA_ |
| not modelled | 99.8 | 15 | PDB header:transferase Chain: A: PDB Molecule:glutamine-2-deoxy-scyllo-inosose PDBTitle: crystal structure of the plp-bound form of btrr,2 a dual functional aminotransferase involved in butirosin3 biosynthesis.
56 | c3tqxA_ |
| not modelled | 99.8 | 17 | PDB header:transferase Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase; PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
57 | c3ffrA_ |
| not modelled | 99.8 | 10 | PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase serc; PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
58 | c3dr4B_ |
| not modelled | 99.8 | 15 | PDB header:transferase Chain: B: PDB Molecule:putative perosamine synthetase; PDBTitle: gdp-perosamine synthase k186a mutant from caulobacter2 crescentus with bound sugar ligand
59 | c3l8aB_ |
| not modelled | 99.8 | 13 | PDB header:lyase Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase; PDBTitle: crystal structure of metc from streptococcus mutans
60 | d2ch1a1 |
| not modelled | 99.8 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
61 | d1pmma_ |
| not modelled | 99.8 | 17 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Pyridoxal-dependent decarboxylase
62 | d2bwna1 |
| not modelled | 99.8 | 18 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
63 | c3pj0D_ |
| not modelled | 99.8 | 17 | PDB header:lyase Chain: D: PDB Molecule:lmo0305 protein; PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
64 | c3lwsF_ |
| not modelled | 99.8 | 15 | PDB header:lyase Chain: F: PDB Molecule:aromatic amino acid beta-eliminating PDBTitle: crystal structure of putative aromatic amino acid beta-2 eliminating lyase/threonine aldolase. (yp_001813866.1) from3 exiguobacterium sp. 255-15 at 2.00 a resolution
65 | c3ju7B_ |
| not modelled | 99.8 | 13 | PDB header:transferase Chain: B: PDB Molecule:putative plp-dependent aminotransferase; PDBTitle: crystal structure of putative plp-dependent aminotransferase2 (np_978343.1) from bacillus cereus atcc 10987 at 2.19 a resolution
66 | d1v72a1 |
| not modelled | 99.8 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
67 | d2v1pa1 |
| not modelled | 99.8 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases
68 | d2fnua1 |
| not modelled | 99.8 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
69 | d1b9ha_ |
| not modelled | 99.8 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
70 | c2okkA_ |
| not modelled | 99.8 | 14 | PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65)
71 | d1tpla_ |
| not modelled | 99.8 | 9 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases
72 | c2cb1A_ |
| not modelled | 99.8 | 15 | PDB header:lyase Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase; PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
73 | c2huuA_ |
| not modelled | 99.8 | 13 | PDB header:transferase Chain: A: PDB Molecule:alanine glyoxylate aminotransferase; PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
74 | d1m32a_ |
| not modelled | 99.8 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
75 | d1jf9a_ |
| not modelled | 99.8 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
76 | d1qgna_ |
| not modelled | 99.8 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
77 | c3ly1C_ |
| not modelled | 99.8 | 12 | PDB header:transferase Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution
78 | c3kaxB_ |
| not modelled | 99.8 | 11 | PDB header:lyase Chain: B: PDB Molecule:aminotransferase, classes i and ii; PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
79 | d2aeua1 |
| not modelled | 99.7 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:SelA-like
80 | d1cl1a_ |
| not modelled | 99.7 | 11 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
81 | d1qz9a_ |
| not modelled | 99.7 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
82 | c3f0hA_ |
| not modelled | 99.7 | 12 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
83 | d1c7ga_ |
| not modelled | 99.7 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases
84 | d1cs1a_ |
| not modelled | 99.7 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
85 | c3ke3A_ |
| not modelled | 99.7 | 15 | PDB header:transferase Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase; PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution
86 | c3qm2A_ |
| not modelled | 99.7 | 10 | PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium
87 | c3getA_ |
| not modelled | 99.7 | 7 | PDB header:transferase Chain: A: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution
88 | c2qmaB_ |
| not modelled | 99.7 | 12 | PDB header:transferase Chain: B: PDB Molecule:diaminobutyrate-pyruvate transaminase and l-2,4- PDBTitle: crystal structure of glutamate decarboxylase domain of2 diaminobutyrate-pyruvate transaminase and l-2,4-diaminobutyrate3 decarboxylase from vibrio parahaemolyticus
89 | c1i41J_ |
| not modelled | 99.7 | 13 | PDB header:lyase Chain: J: PDB Molecule:cystathionine gamma-synthase; PDBTitle: cystathionine gamma-synthase in complex with the inhibitor2 appa
90 | d1c7na_ |
| not modelled | 99.7 | 10 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
91 | d1elua_ |
| not modelled | 99.7 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
92 | c2fyfB_ |
| not modelled | 99.7 | 16 | PDB header:transferase Chain: B: PDB Molecule:phosphoserine aminotransferase; PDBTitle: structure of a putative phosphoserine aminotransferase from2 mycobacterium tuberculosis
93 | c1d2fB_ |
| not modelled | 99.7 | 12 | PDB header:transferase Chain: B: PDB Molecule:maly protein; PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
94 | d1x0ma1 |
| not modelled | 99.7 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
95 | c3ri6A_ |
| not modelled | 99.7 | 12 | PDB header:transferase Chain: A: PDB Molecule:o-acetylhomoserine sulfhydrylase; PDBTitle: a novel mechanism of sulfur transfer catalyzed by o-acetylhomoserine2 sulfhydrylase in methionine biosynthetic pathway of wolinella3 succinogenes
96 | d1lc5a_ |
| not modelled | 99.7 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
97 | d1bw0a_ |
| not modelled | 99.7 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
98 | c3caiA_ |
| not modelled | 99.7 | 13 | PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
99 | d1gc0a_ |
| not modelled | 99.7 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
100 | c3aemD_ |
| not modelled | 99.7 | 10 | PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate
101 | c3op7A_ |
| not modelled | 99.7 | 12 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
102 | d2c0ra1 |
| not modelled | 99.7 | 16 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
103 | d1d2fa_ |
| not modelled | 99.7 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
104 | c3eucB_ |
| not modelled | 99.7 | 10 | PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2; PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
105 | c2yrrA_ |
| not modelled | 99.7 | 16 | PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class v; PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8
106 | c2gqnB_ |
| not modelled | 99.7 | 12 | PDB header:lyase Chain: B: PDB Molecule:cystathionine beta-lyase; PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
107 | c3hdoB_ |
| not modelled | 99.7 | 14 | PDB header:transferase Chain: B: PDB Molecule:histidinol-phosphate aminotransferase; PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
108 | d1t3ia_ |
| not modelled | 99.7 | 15 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
109 | d1v2da_ |
| not modelled | 99.7 | 14 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like
110 | c3qi6B_ |
| not modelled | 99.7 | 12 | PDB header:lyase Chain: B: PDB Molecule:cystathionine gamma-synthase metb (cgs); PDBTitle: crystal structure of cystathionine gamma-synthase metb (cgs) from2 mycobacterium ulcerans agy99
111 | d1ibja_ |
| not modelled | 99.7 | 13 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
112 | c3b46B_ |
| not modelled | 99.7 | 12 | PDB header:transferase Chain: B: PDB Molecule:aminotransferase bna3; PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
113 | d1iaya_ |
| not modelled | 99.7 | 12 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
114 | c1ibjC_ |
| not modelled | 99.7 | 13 | PDB header:lyase Chain: C: PDB Molecule:cystathionine beta-lyase; PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana
115 | c3fkdC_ |
| not modelled | 99.7 | 12 | PDB header:lyase Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase; PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis
116 | c1ynuA_ |
| not modelled | 99.7 | 13 | PDB header:lyase Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase; PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine
117 | c2nmpC_ |
| not modelled | 99.7 | 10 | PDB header:lyase Chain: C: PDB Molecule:cystathionine gamma-lyase; PDBTitle: crystal structure of human cystathionine gamma lyase
118 | c2hdyA_ |
| not modelled | 99.7 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:selenocysteine lyase; PDBTitle: structure of human selenocysteine lyase
119 | c3ndnC_ |
| not modelled | 99.7 | 15 | PDB header:lyase Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase; PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate
120 | c3dzzB_ |
| not modelled | 99.7 | 10 | PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0