16/01/2012 17:03:00 : INFO  : Run start: Mon Jan 16 17:02:58 GMT 2012
16/01/2012 17:03:11 : INFO  : Initialised job
16/01/2012 17:03:15 : INFO  : Renaming log file 'phyre2_20120116_170257.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/fbc12e807d7c2635/phyre_20120116_170257.log'
16/01/2012 17:03:18 : INFO  : Initialised job:
Sequence
>batch____
MNIIAIMGPHGVFYKDEPIKELESALVAQGFQIIWPQNSVDLLKFIEHNPRICGVIFDWD
EYSLDLCSDINQLNEYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGQAEDIAIRMRQY
TDEYLDNITPPFTKALFTYVKERKYTFCTPGHMGGTAYQKSPVGCLFYDFFGGNTLKADV
SISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPSGSTLLI
DRNCHKSLAHLLMMNDVVPVWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVH
AVITNSTYDGLLYNTDWIKQTLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVAGKVIF
ETQSTHKMLAALSQASLIHIKGEYDEEAFNEAFMMHTTTSPSYPIVASVETAAAMLRGNP
GKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPPQVDEAECWPVAPGEQWHGFNDAD
ADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIG
IDKTKAMGLLRGLTEFKRSYDLNLRIKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRKH
DLPGLMLRAFDTLPEMIMTPHQAWQRQIKGEVETIALEQLVGRVSANMILPYPPGVPLLM
PGEMLTKESRTVLDFLLMLCSVGQHYPGFETDIHGAKQDEDGVYRVRVLKMAG

16/01/2012 17:03:21 : INFO  : Checked sequence
16/01/2012 17:03:27 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 17:03:29 : INFO  : PSI-BLAST 3 iterations
16/01/2012 17:06:26 : INFO  : PSI-BLAST 5 iterations
16/01/2012 17:10:48 : INFO  : Finished PSI-BLAST
16/01/2012 17:10:53 : INFO  : Running Buildali to generate a3m file
16/01/2012 17:24:44 : INFO  : Converting to HMM
16/01/2012 17:24:52 : INFO  : Calibrating HMM
16/01/2012 17:25:27 : INFO  : Searching HMM database
16/01/2012 17:40:15 : INFO  : Finished buildali
16/01/2012 17:40:20 : INFO  : Predicting secondary structure
16/01/2012 17:40:37 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 17:40:41 : INFO  : Predicting Disordered regions
16/01/2012 17:40:50 : INFO  : Predicted Disorder (Disopred)
16/01/2012 17:40:54 : INFO  : Running memsat_svm check
16/01/2012 17:47:11 : INFO  : Running memsat_svm full
16/01/2012 18:02:27 : INFO  : Predicted Transmembrane (memsat_svm) ID 'fbc12e807d7c2635'
16/01/2012 18:02:30 : INFO  : Initialising fold library search
16/01/2012 18:02:37 : INFO  : Initialised search input
16/01/2012 18:02:42 : INFO  : Building Ensemble models
16/01/2012 18:02:48 : INFO  : Building hh.c3n75E_.model.1.pdb
16/01/2012 18:03:20 : INFO  : Building c3n75E_.1.pdb
16/01/2012 18:03:51 : INFO  : Building c2vycA_.2.pdb
16/01/2012 18:04:22 : INFO  : Building c1c4kA_.3.pdb
16/01/2012 18:04:52 : INFO  : Building d1c4ka2.4.pdb
16/01/2012 18:05:23 : INFO  : Building c2x3lA_.5.pdb
16/01/2012 18:05:54 : INFO  : Building d1rv3a_.6.pdb
16/01/2012 18:06:25 : INFO  : Building d1bj4a_.7.pdb
16/01/2012 18:06:54 : INFO  : Building d1ejia_.8.pdb
16/01/2012 18:07:25 : INFO  : Building d2z67a1.9.pdb
16/01/2012 18:07:56 : INFO  : Building c2a7vA_.10.pdb
16/01/2012 18:08:28 : INFO  : Building d2a7va1.11.pdb
16/01/2012 18:08:58 : INFO  : Building d1c4ka3.12.pdb
16/01/2012 18:09:28 : INFO  : Building c3h7fB_.13.pdb
16/01/2012 18:10:00 : INFO  : Building c3hl2D_.14.pdb
16/01/2012 18:10:30 : INFO  : Building d3bc8a1.15.pdb
16/01/2012 18:10:59 : INFO  : Building c3ecdC_.16.pdb
16/01/2012 18:11:29 : INFO  : Building c3n0lA_.17.pdb
16/01/2012 18:11:58 : INFO  : Building d1dfoa_.18.pdb
16/01/2012 18:12:25 : INFO  : Building d1kl1a_.19.pdb
16/01/2012 18:12:52 : INFO  : Building d2e7ja1.20.pdb
16/01/2012 18:13:58 : INFO  : Finished HH model building
16/01/2012 18:14:01 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 18:15:07 : INFO  : html domain output complete ID 'fbc12e807d7c2635'
16/01/2012 21:48:11 : INFO  : Run end  : Mon Jan 16 21:48:09 GMT 2012
