232 d2hoxa1 Probab=98.98   E-value=8.5e-07  Score=66.21  Aligned_columns=294  Identities=13%

Q ss_pred             HHHHHHHHHHHCC-------CCEEEEECCHHHHHHHHHHHHCCCCCE--------EEEECCHHHHHHHHHHHCCCEEEEE
Q ss_conf             9999999998297-------702894166358999999985389989--------9993711489999999879859993
Q batch____       198 LEAEEYIARTFGA-------EQSYIVTNGTSTSNKIVGMYAAPSGST--------LLIDRNCHKSLAHLLMMNDVVPVWL  262 (713)
Q Consensus       198 ~eAq~laA~~yGA-------~~t~FlvNGST~gn~a~i~a~~~~Gd~--------VLv~RNcHKSv~~al~Lsga~PvYl  262 (713)
                      .+-++..+++++.       ++-.-++||+|.++.+++.++++|||.        |++..-+.-.....+.+.|.....+
T Consensus       103 ~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~~  182 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW  182 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCC
T ss_conf             89999999998850886788776999468899999999986488861235677435730023778999998559974442


Q ss_pred             ECCCCCCCCCCCCCHHHCCHHHHHHHHHHCCCCCCCEEEEEECC-CCCCCHHHHHHHHHHHCCCC--EEEECCCCHHCCC
Q ss_conf             17847323236778555899999999984610027328999889-82302102899999847588--8994475000025
Q batch____       263 KPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTLDVPS--IHFDSAWVPYTHF  339 (713)
Q Consensus       263 ~P~~d~~g~~g~i~~~~it~~~i~~al~~~p~ak~~~~vvLTsP-TY~Gv~~Di~~I~~~~~~~~--LlVDEAHGAH~~F  339 (713)
                      ....+.                    +++.-+.+. ++++++|| |=-|.+.+       +..++  +++||+++- +.|
T Consensus       183 ~~d~~~--------------------~~~~~~~~~-~~~~i~~P~NPtG~v~~-------a~~~~~~~i~De~y~~-~~~  233 (425)
T d2hoxa1         183 AGNAAN--------------------YVNVSNPEQ-YIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYW-PHY  233 (425)
T ss_dssp             EEEGGG--------------------GTTCSCGGG-EEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCS-TTT
T ss_pred             CCCHHH--------------------HHHHCCCCC-EEEEECCCCCCCCEEEE-------EEECCCEEEEECCCCC-CCC
T ss_conf             479889--------------------997248885-79998178888560654-------2323968997143234-332


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEEEECCCCCCC-CCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH----
Q ss_conf             8233345788864101780799833420100-33835543305778989999999986227842899999999999----
Q batch____       340 HPIYQGKSGMSGERVAGKVIFETQSTHKMLA-ALSQASLIHIKGEYDEEAFNEAFMMHTTTSPSYPIVASVETAAA----  414 (713)
Q Consensus       340 hp~~~~~~~m~~~a~~~gad~vvqStHKtLp-ALTQ~S~LHv~~~i~~~~~~~al~~~qSTSPSYlLmASLD~Ar~----  414 (713)
                      .+.          +...+.++++.|.-|+++ +=....|+.+.++.-.+++.+.........++-.-++.+..=..    
T Consensus       234 ~~~----------~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~~~~~  303 (425)
T d2hoxa1         234 TPI----------KYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAM  303 (425)
T ss_dssp             SCC----------CSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCC----------CCCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHH
T ss_conf             333----------3456854999815510123323101899689899999998641057773689999999996020134


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEEE
Q ss_conf             -9841104899999999999999999732222334222356532223311012344433455444457830005706999
Q batch____       415 -MLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPPQVDEAECWPVAPGEQWHGFNDADADHMFLDPVKVTI  493 (713)
Q Consensus       415 -~l~~e~G~~l~~~~i~~a~~~R~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDP~KltI  493 (713)
                       ......+++.++...+....-|+.+...-.......+....+......-.....+                 -+.-+.+
T Consensus       304 ~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~-----------------~~~f~w~  366 (425)
T d2hoxa1         304 VKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPP-----------------SPSYAWV  366 (425)
T ss_dssp             HHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECC-----------------CCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-----------------CCCEEEE
T ss_conf             56555548999999999999999999999863576300345655432210013778-----------------7616998


Q ss_pred             EECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCEE---EEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             8068777642111288999999999982968773589869---9996678899899999999999998
Q batch____       494 LTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNL---LFLFSIGIDKTKAMGLLRGLTEFKR  558 (713)
Q Consensus       494 ~~~g~~~~G~~~~~Gi~g~~l~~~L~~~gI~~E~a~~~~v---L~l~sig~t~~~~~~L~~aL~~i~~  558 (713)
                      .++.-...           .+.++|+++||.+-=.+.+..   .+=+|++.++++++.+++.|.++-+
T Consensus       367 ~~~~~~~~-----------~~~~lL~e~GI~v~pGs~FG~~~~~vRiSl~~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         367 KCEWEEDK-----------DCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             EECSGGGC-----------SHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred             ECCCCCHH-----------HHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf             67898089-----------9999999669499717023898865999913998999999999999872