Phyre 2 alignment of P0A8W2 with c2ebyA_

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Job Description | P0A8W2
Confidence | 78.65% | Date | Thu Jan 5 11:08:50 GMT 2012
Rank | 358 | Aligned Residues | 35
% Identity | 17% | Template | c2ebyA_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq; | PDBTitle: crystal structure of a hypothetical protein from e. coli
Resolution | 2.25 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 34 | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | W | V | T | L | H | N | I | H | Q | L | P | P | D | Q | S | Q | I | Q | L | A | K | A | I | G | I | E | Q | P | S | L | V | R | T | L | D
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | D | I | L | L | Y | E | Y | L | E | P | L | D | L | K | I | N | E | L | A | E | L | L | H | V | H | R | N | S | V | S | A | L | I | N
Template Known Secondary structure |  |  |  |  |  |  |  |  | T | T | T | T | T | T |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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