BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (253 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 520 e-146 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 169 7e-41 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 147 3e-34 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 147 4e-34 UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 131 3e-29 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 120 3e-26 UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 110 7e-23 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 108 2e-22 UniRef50_C6UPG2 Putative envelope protein encoded within prophag... 105 2e-21 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 99 9e-20 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 96 2e-18 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 95 3e-18 UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 91 4e-17 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 89 1e-16 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 89 2e-16 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 83 1e-14 UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonel... 82 1e-14 UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 ... 81 4e-14 UniRef50_P0A2T2 Virulence regulon transcriptional activator virF... 79 1e-13 UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11... 79 1e-13 UniRef50_P23774 987P fimbrial operon positive regulatory protein... 79 1e-13 UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 T... 77 5e-13 UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=E... 77 5e-13 UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escheric... 77 5e-13 UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=P... 75 2e-12 UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=P... 75 2e-12 UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein ... 74 4e-12 UniRef50_Q04819 ORF11 n=5 Tax=Salmonella enterica subsp. enteric... 74 4e-12 UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Ent... 74 5e-12 UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Esch... 73 9e-12 UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n... 73 1e-11 UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax... 70 4e-11 UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein ... 70 5e-11 UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory ... 69 1e-10 UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC ... 68 3e-10 UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma pro... 68 3e-10 UniRef50_A6B243 Transcriptional activator of virulence loci n=4 ... 67 4e-10 UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepI... 67 6e-10 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 66 9e-10 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 66 1e-09 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 66 1e-09 UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serra... 66 1e-09 UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=... 65 2e-09 UniRef50_A6B6J4 Putative CFA/I fimbrial subunit D n=2 Tax=Vibrio... 65 2e-09 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 65 2e-09 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 65 2e-09 UniRef50_C3K2A2 Putative putative AraC-family regulatory protein... 62 1e-08 UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein ... 62 1e-08 UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=M... 62 2e-08 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 62 2e-08 UniRef50_C2LMQ1 Virulence regulon transcriptional activator VirF... 62 2e-08 UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromob... 61 3e-08 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 61 3e-08 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 61 3e-08 UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n... 61 3e-08 UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=D... 61 4e-08 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 61 4e-08 UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=P... 60 5e-08 UniRef50_Q399T6 Transcriptional regulator, AraC family n=18 Tax=... 60 9e-08 UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=X... 59 1e-07 UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=P... 59 1e-07 UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein ... 58 3e-07 UniRef50_UPI0001C3522D two-component system, response regulator ... 58 4e-07 UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like pr... 58 4e-07 UniRef50_A3M7C3 Putative transcriptional regulator (AraC family)... 58 4e-07 UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n... 58 4e-07 UniRef50_C6CT66 Two component transcriptional regulator, AraC fa... 57 4e-07 UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=A... 57 4e-07 UniRef50_A9FPY9 Transcriptional regulator, AraC family n=1 Tax=S... 57 5e-07 UniRef50_Q7MJE3 AraC-type DNA-binding domain-containing protein ... 57 6e-07 UniRef50_D1Y5U1 Putative two-component response regulator n=1 Ta... 57 8e-07 UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=C... 57 8e-07 UniRef50_UPI0001C37D6C ggdef domain n=1 Tax=Ruminococcus flavefa... 56 9e-07 UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=A... 56 1e-06 UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmone... 56 1e-06 UniRef50_C0Z4C7 Probable two-component response regulator n=1 Ta... 56 1e-06 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 56 1e-06 UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Ac... 56 1e-06 UniRef50_Q3KCK3 Putative transcriptional Regulator, AraC family ... 56 1e-06 UniRef50_A7HAQ8 Helix-turn-helix-domain containing protein AraC ... 55 2e-06 UniRef50_A4APJ2 Probable serine/threonine kinase n=2 Tax=unclass... 55 2e-06 UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=... 55 2e-06 UniRef50_C7PF35 Transcriptional regulator, AraC family n=1 Tax=C... 55 3e-06 UniRef50_UPI0001693CE5 response regulator receiver protein n=1 T... 55 3e-06 UniRef50_Q0BZ29 Transcriptional regulator, AraC family n=1 Tax=H... 55 3e-06 UniRef50_B4X435 Transcriptional regulator, AraC family protein n... 55 3e-06 UniRef50_UPI000178A7F2 two component transcriptional regulator, ... 55 3e-06 UniRef50_UPI0001851370 two component AraC family transcriptional... 55 3e-06 UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH... 54 4e-06 UniRef50_B6R5N0 Probable transcriptional regulatory protein, put... 54 4e-06 UniRef50_Q88GS8 Transcriptional regulator, AraC family n=11 Tax=... 54 4e-06 UniRef50_D2MM17 Response regulator receiver domain protein n=1 T... 54 4e-06 UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V... 54 4e-06 UniRef50_C6S4V7 Transcriptional regulator, AraC family n=23 Tax=... 54 4e-06 UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=G... 54 5e-06 UniRef50_Q9Z3Q6 Transcriptional activator rhrA n=1 Tax=Sinorhizo... 54 6e-06 UniRef50_B4SR55 Transcriptional regulator, AraC family n=4 Tax=P... 54 6e-06 UniRef50_C7RUT1 Transcriptional regulator, AraC family n=1 Tax=C... 54 6e-06 UniRef50_B2JSH9 Transcriptional regulator, AraC family n=1 Tax=B... 54 6e-06 UniRef50_D1X8C9 Transcriptional regulator, AraC family n=2 Tax=S... 54 6e-06 UniRef50_A1TVA8 Transcriptional regulator, AraC family n=17 Tax=... 54 6e-06 UniRef50_Q1ZVK9 Transcriptional regulatory, AraC-like protein n=... 54 7e-06 UniRef50_A4TFK9 Transcriptional regulator, AraC family n=11 Tax=... 54 7e-06 UniRef50_C6B202 Transcriptional regulator, AraC family n=3 Tax=R... 53 8e-06 UniRef50_A0Z5Y2 Transcriptional regulator OruR n=1 Tax=marine ga... 53 8e-06 UniRef50_B8FH05 Transcriptional regulator, AraC family n=1 Tax=D... 53 8e-06 UniRef50_Q7N4L6 Similarities in the C-terminal part with transcr... 53 9e-06 UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=g... 53 1e-05 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 53 1e-05 UniRef50_C6J482 Two component transcriptional regulator n=1 Tax=... 53 1e-05 UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein ... 53 1e-05 UniRef50_A9IHK1 Transcriptional regulator, AraC family n=1 Tax=B... 53 1e-05 UniRef50_Q5DYJ4 Transcriptional regulator, AraC family n=1 Tax=V... 53 1e-05 UniRef50_A0M6C0 Protein containing AraC type HTH domain n=18 Tax... 53 1e-05 UniRef50_Q84HG1 QbsA n=1 Tax=Pseudomonas fluorescens RepID=Q84HG... 53 1e-05 UniRef50_Q48HQ8 Transcriptional regulator, AraC family n=3 Tax=P... 53 1e-05 UniRef50_D0S2A2 Transcriptional regulator n=1 Tax=Acinetobacter ... 53 1e-05 UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecali... 52 1e-05 UniRef50_C0EYR4 Putative uncharacterized protein n=1 Tax=Eubacte... 52 1e-05 UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n... 52 1e-05 UniRef50_C4ZBY2 Two-component response regulator n=4 Tax=Clostri... 52 1e-05 UniRef50_C6W9P9 Transcriptional regulator, AraC family n=1 Tax=A... 52 1e-05 UniRef50_C2FUL2 Sensor protein n=1 Tax=Sphingobacterium spiritiv... 52 1e-05 UniRef50_Q169B6 Transcriptional regulator, AraC family, putative... 52 1e-05 UniRef50_P77634 Uncharacterized HTH-type transcriptional regulat... 52 2e-05 UniRef50_A1HMP5 Two component transcriptional regulator, AraC fa... 52 2e-05 UniRef50_C6J1B0 Transcriptional regulator n=2 Tax=Firmicutes Rep... 52 2e-05 UniRef50_C2BXH0 Response regulator n=1 Tax=Listeria grayi DSM 20... 52 2e-05 UniRef50_Q7MF52 AraC-type DNA-binding domain-containing protein ... 52 2e-05 UniRef50_Q0VQ50 Transcriptional regulator, AraC family n=2 Tax=A... 52 2e-05 UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 T... 52 2e-05 UniRef50_C7PH54 Transcriptional regulator, AraC family n=1 Tax=C... 52 2e-05 UniRef50_A5U9G2 AraC-family transcriptional regulator n=12 Tax=M... 52 2e-05 UniRef50_Q0VPB7 Transcriptional regulator, AraC family n=1 Tax=A... 52 2e-05 UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n... 52 2e-05 UniRef50_C7XTU9 Transcriptional regulator n=1 Tax=Lactobacillus ... 52 2e-05 UniRef50_C0AA65 AraC-type DNA-binding domain-containing protein-... 52 2e-05 UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=m... 52 2e-05 UniRef50_A7B5D7 Putative uncharacterized protein n=1 Tax=Ruminoc... 52 2e-05 UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillu... 52 2e-05 UniRef50_C9L8Z4 Transcriptional regulator, AraC family n=2 Tax=C... 52 2e-05 UniRef50_Q397S2 Transcriptional regulator, AraC family n=4 Tax=B... 52 3e-05 UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=m... 52 3e-05 UniRef50_B9DJR6 Putative uncharacterized protein n=1 Tax=Staphyl... 52 3e-05 UniRef50_C6VTG9 Transcriptional regulator, AraC family n=1 Tax=D... 52 3e-05 UniRef50_B0NBQ5 Putative uncharacterized protein n=2 Tax=Clostri... 52 3e-05 UniRef50_A6FZ93 Transcriptional regulator, AraC family protein n... 52 3e-05 UniRef50_A5VDX1 Transcriptional regulator, AraC family n=1 Tax=S... 51 3e-05 UniRef50_B4WZV2 Transcriptional regulator, AraC family protein n... 51 4e-05 UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n... 51 4e-05 UniRef50_A9U7E9 Predicted protein n=1 Tax=Physcomitrella patens ... 51 4e-05 UniRef50_UPI0001C374E0 transcriptional regulator, AraC family pr... 51 4e-05 UniRef50_B6BG36 Transcriptional Regulator, AraC family, putative... 51 4e-05 UniRef50_B8IW11 Transcriptional regulator, AraC family n=1 Tax=M... 51 4e-05 UniRef50_A6GXX7 Probable transcriptional regulator, AraC family ... 51 4e-05 UniRef50_P45043 Xylose operon regulatory protein n=26 Tax=Gammap... 51 4e-05 UniRef50_UPI0001C365B5 response regulator receiver protein n=1 T... 51 4e-05 UniRef50_Q1ZU86 Putative CFA/I fimbrial subunit D n=1 Tax=Photob... 51 4e-05 UniRef50_Q2BIB0 Putative uncharacterized protein n=1 Tax=Neptuni... 51 4e-05 UniRef50_UPI0001C36B1C two component transcriptional regulator, ... 51 4e-05 UniRef50_A6P0J9 Putative uncharacterized protein n=1 Tax=Bactero... 51 4e-05 UniRef50_Q1GKL0 Transcriptional regulator, AraC family n=2 Tax=R... 51 5e-05 UniRef50_D0LYU6 Transcriptional regulator, AraC family n=1 Tax=H... 51 5e-05 UniRef50_A6F6Z7 Probable transcriptional regulator n=1 Tax=Morit... 50 5e-05 UniRef50_C9Y4B2 Putative uncharacterized protein n=1 Tax=Cronoba... 50 5e-05 UniRef50_C7R5F1 Transcriptional regulator, AraC family n=1 Tax=J... 50 5e-05 UniRef50_C5EPK7 Two-component response regulator n=1 Tax=Clostri... 50 5e-05 UniRef50_C4Z3B2 Two-component system, response regulator YesN n=... 50 5e-05 UniRef50_Q39HU5 Transcriptional regulator, AraC family n=1 Tax=B... 50 5e-05 UniRef50_UPI0001C3708E response regulator n=1 Tax=Ruminococcus f... 50 6e-05 UniRef50_A6GMI7 Putative transcriptional regulator, AraC family ... 50 6e-05 UniRef50_Q5E051 Transcriptional regulator, AraC family n=1 Tax=V... 50 6e-05 UniRef50_C0ACQ1 AraC/XylS family transcriptional regulator n=1 T... 50 6e-05 UniRef50_C7G923 Transcriptional regulator, AraC family n=1 Tax=R... 50 6e-05 UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=P... 50 6e-05 UniRef50_Q1QE65 Transcriptional regulator, AraC family n=1 Tax=P... 50 6e-05 UniRef50_B7V3C5 Probable transcriptional regulator n=7 Tax=Pseud... 50 6e-05 UniRef50_A6V4I7 HTH-type transcriptional regulator VqsM (Virulen... 50 6e-05 UniRef50_C0Z962 Probable two-component response regulator n=1 Ta... 50 6e-05 UniRef50_D1WSG5 Transcriptional regulator, AraC family n=3 Tax=S... 50 7e-05 UniRef50_Q01W15 Transcriptional regulator, AraC family n=1 Tax=C... 50 7e-05 UniRef50_B3H2Y3 Xylose operon regulatory protein n=7 Tax=Gammapr... 50 7e-05 UniRef50_B6VKV5 Transcriptional regulator, arac family n=1 Tax=P... 50 7e-05 UniRef50_C6PV52 Transcriptional regulator, AraC family n=1 Tax=C... 50 7e-05 UniRef50_B4UGM6 Transcriptional regulator, AraC family n=4 Tax=C... 50 7e-05 UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC ... 50 8e-05 UniRef50_C6CBK7 Transcriptional regulator, AraC family n=1 Tax=D... 50 8e-05 UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein ... 50 8e-05 UniRef50_A7B0I4 Putative uncharacterized protein n=1 Tax=Ruminoc... 50 8e-05 UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulat... 50 9e-05 UniRef50_A8SS64 Putative uncharacterized protein n=1 Tax=Coproco... 50 9e-05 UniRef50_Q2RW15 Transcriptional regulator, AraC family n=1 Tax=R... 50 9e-05 UniRef50_B6EKX1 HTH-type transcriptional regulator, AraC family ... 50 9e-05 UniRef50_Q7NUP3 Probable transcriptional regulator n=1 Tax=Chrom... 50 9e-05 UniRef50_A5KJJ5 Putative uncharacterized protein n=1 Tax=Ruminoc... 50 9e-05 UniRef50_C4GDG8 Putative uncharacterized protein n=1 Tax=Shuttle... 50 9e-05 UniRef50_Q8XYE5 Probable transcription regulator protein n=1 Tax... 50 9e-05 UniRef50_Q11NM6 Transcriptional regulator, AraC family n=1 Tax=C... 50 1e-04 UniRef50_B9R5F4 Transcriptional regulator, AraC family protein n... 50 1e-04 UniRef50_C1PB78 Two component transcriptional regulator, AraC fa... 50 1e-04 UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 ... 50 1e-04 UniRef50_Q7UL84 Probable araC family transcription regulator n=1... 50 1e-04 UniRef50_C5RJU1 Two component transcriptional regulator, AraC fa... 50 1e-04 UniRef50_A6Y0W0 AraC-type DNA-binding domain-containing protein ... 49 1e-04 UniRef50_Q1N423 Transcriptional regulator, AraC family protein n... 49 1e-04 UniRef50_D1TH46 Transcriptional regulator, AraC family n=2 Tax=c... 49 1e-04 UniRef50_A8I129 Transcriptional regulatory protein n=1 Tax=Azorh... 49 1e-04 UniRef50_D1N3X5 Transcriptional regulator, AraC family n=1 Tax=V... 49 1e-04 UniRef50_Q1N3Z6 Transcriptional regulator, AraC family protein n... 49 1e-04 UniRef50_UPI0001787D0E two component transcriptional regulator, ... 49 1e-04 UniRef50_D1UDP7 Transcriptional regulator, AraC family n=1 Tax=B... 49 1e-04 UniRef50_B1SDU2 Putative uncharacterized protein n=1 Tax=Strepto... 49 1e-04 UniRef50_D2Q8B5 Putative uncharacterized protein n=2 Tax=Bifidob... 49 1e-04 UniRef50_C1DA10 Helix-turn-helix-domain containing protein, AraC... 49 1e-04 UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein ... 49 1e-04 UniRef50_A8L2S5 Transcriptional regulator, AraC family n=3 Tax=A... 49 1e-04 UniRef50_C7G6J0 Putative response regulator receiver domain prot... 49 1e-04 UniRef50_UPI0001973505 two-component response regulator n=1 Tax=... 49 2e-04 UniRef50_Q2IYF7 Transcriptional regulator, AraC family n=1 Tax=R... 49 2e-04 UniRef50_A6CZ56 Putative uncharacterized protein n=1 Tax=Vibrio ... 49 2e-04 UniRef50_C4GGT9 Putative uncharacterized protein n=1 Tax=Kingell... 49 2e-04 UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 ... 49 2e-04 UniRef50_C7PTR1 Transcriptional regulator, AraC family n=1 Tax=C... 49 2e-04 UniRef50_A5F384 TCP pilus virulence regulatory protein n=21 Tax=... 49 2e-04 UniRef50_A6DM00 Transcriptional regulator, AraC/XylS family prot... 49 2e-04 UniRef50_A9ACW6 AraC family transcriptional regulator n=3 Tax=Bu... 49 2e-04 UniRef50_P0ACI5 Xylose operon regulatory protein n=151 Tax=Gamma... 49 2e-04 UniRef50_C6C3E5 Transcriptional regulator, AraC family n=1 Tax=D... 49 2e-04 UniRef50_Q3JJW1 AndR n=53 Tax=Burkholderia RepID=Q3JJW1_BURP1 49 2e-04 UniRef50_C5C0Z0 Transcriptional regulator, AraC family n=1 Tax=B... 49 2e-04 UniRef50_B4WXJ1 Transcriptional regulator, AraC family protein n... 49 2e-04 UniRef50_P68913 Uncharacterized HTH-type transcriptional regulat... 49 2e-04 UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein ... 49 2e-04 UniRef50_C6CT15 Two component transcriptional regulator, AraC fa... 49 2e-04 UniRef50_C0A2A3 AraC-type DNA-binding domain-containing protein-... 49 2e-04 UniRef50_D2YK24 Type 4 prepilin-like protein leader peptide-proc... 49 2e-04 UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein ... 49 2e-04 UniRef50_A5W7M3 Transcriptional regulator, AraC family n=3 Tax=P... 49 2e-04 UniRef50_Q7MR75 Putative uncharacterized protein n=1 Tax=Wolinel... 49 2e-04 UniRef50_C6IWB5 Predicted protein n=1 Tax=Paenibacillus sp. oral... 49 2e-04 UniRef50_A9CU20 Transcriptional regulator, AraC family protein n... 49 2e-04 UniRef50_B7S369 Transcriptional regulator, AraC family n=1 Tax=m... 49 2e-04 UniRef50_C9PF84 Transcriptional regulator AraC family n=1 Tax=Vi... 49 2e-04 UniRef50_C9NYS3 Transcriptional regulator AraC family n=9 Tax=Vi... 49 2e-04 UniRef50_Q15PL3 Transcriptional regulator, AraC family n=3 Tax=A... 49 2e-04 UniRef50_UPI0001C37E0B transcriptional regulator, LacI family pr... 49 2e-04 UniRef50_C9Y8T8 Putative uncharacterized protein n=1 Tax=Curviba... 48 2e-04 UniRef50_C0D4G6 Putative uncharacterized protein n=2 Tax=Clostri... 48 2e-04 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 48 2e-04 UniRef50_A9WH32 Sensor protein n=2 Tax=Chloroflexus RepID=A9WH32... 48 2e-04 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 520 bits (1338), Expect = e-146, Method: Compositional matrix adjust. Identities = 249/253 (98%), Positives = 250/253 (98%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGF ENTIKK Sbjct: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFNENTIKK 60 Query: 61 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA Sbjct: 61 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 Query: 121 CKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ 180 CKGFITLLTNGVLSVSGKVRNIVNMK AHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ Sbjct: 121 CKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ 180 Query: 181 ILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 ILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ HT Sbjct: 181 ILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQRHT 240 Query: 241 GMNTGNTMNALAI 253 GMNTGNTM+ALAI Sbjct: 241 GMNTGNTMSALAI 253 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 169 bits (428), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 142/229 (62%), Gaps = 1/229 (0%) Query: 3 LVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYL 62 +VC VI ++ F I K F ++L+ DN ++ F + + E+ E ++KY+ Sbjct: 2 IVCYVILVNRPFETEIAGKKLFFQKNDVLLTDNISQSFFLRHPGNVTELRIDECIVRKYM 61 Query: 63 QCTN-IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC 121 + + IQ V F++ + LL+ ++ L+ ++ FSE + F+CLSIF+ Sbjct: 62 ESADRIQHSDSAVSVPFIKTTFSHIALLHNVMQNLSLQKTLPQQFSEQMFFACLSIFSTH 121 Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQI 181 +GF+ LL + SV+ KVR I+ P+ W++KDI + LY+SESLLK+KL++E+ +FSQI Sbjct: 122 RGFMFLLFRCINSVALKVRYIICSSPSRAWRVKDISNSLYMSESLLKRKLQEEKVSFSQI 181 Query: 182 LLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 LLD RM +A+ LI + SVN+IA +CGYAST YFI FR++FG +P ++ Sbjct: 182 LLDIRMHNARQLISSKLSVNQIAIRCGYASTPYFISVFREYFGITPHQM 230 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 1/233 (0%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M VC I I N L + G++L++ ++ R + Y + EI E+T++ Sbjct: 7 MPGVCYFILIKKPINFQFLKDFLILNYGDVLLLKHSERDFLQSYSDKYLEIELNEDTVRN 66 Query: 61 YLQCTN-IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 YL N + + P LR S LL MI +NS+ H +F + + FS LS+F+ Sbjct: 67 YLSYYNHCEKQFLETPPCILRKSFAYPDLLISMIDNINSQNHIHPDFKDAIFFSLLSVFS 126 Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 LT+G+ + SGKVR+I + WKL+D+ D LY+SESL+KKKL E T+FS Sbjct: 127 DVANLRAFLTSGMPTFSGKVRSIFLSDVSKHWKLRDLADYLYMSESLIKKKLLLENTSFS 186 Query: 180 QILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +ILLD RM A L++ + ++E CG++STSYF+ FR+++ +P++ K Sbjct: 187 KILLDTRMSLAIKLLKQNHPIKYVSEMCGFSSTSYFVCLFRQYYECTPRKYLK 239 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/248 (34%), Positives = 137/248 (55%), Gaps = 7/248 (2%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M+ CSVI I +F+ + G ++VD++ R F Y F I + Sbjct: 4 MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISR 63 Query: 61 YLQCTNIQTVT--VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 YL+ N++ ++ P+ +L+ + L+ +I++ N F E + F+CLS F Sbjct: 64 YLKANNLRDISDCREYPS-YLKINFADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAF 122 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 ++ K F L + S KV+ I++ + PW+LKDI LY+SESLLK+KLK+E +F Sbjct: 123 SSEKQFGVFLFECLKSTEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKEEGVSF 182 Query: 179 SQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK---EY 234 S+I+LD RMQ A+ L+ ++K+A+ CGYAS SYF Y FR++FG SP + S+ E Sbjct: 183 SKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSES 242 Query: 235 RCQSHTGM 242 + +H G+ Sbjct: 243 KILTHQGI 250 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 130/237 (54%), Gaps = 7/237 (2%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M+ VCSVI I +F+ + + + IL+++ + F + + E T+ Sbjct: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 Query: 61 YLQCTNIQTVT----VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLS 116 YLQ NI+ + + + L + P L+ + N N S +L SCLS Sbjct: 61 YLQ--NIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLS 118 Query: 117 IFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT 176 +F+ K I LL N + +VSGKV +++ A W L+DI + +Y SESL+KKKL+ E T Sbjct: 119 MFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENT 178 Query: 177 TFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 FS+ILL +RM A+ L+ + ++ IAE+CGY+STSYFI FR+++G +P + ++ Sbjct: 179 CFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 3/234 (1%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M+ VCSV+ + + + K ++++D + + + E + Sbjct: 1 MAHVCSVVLVCRSLDIYYEKKHLNIIKDSLILMDEKLAFRIPHNCSWVRSLEIDECIVSN 60 Query: 61 YLQCTN--IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 YLQ Q + L P L+ + ++ E S +L FSCLS+F Sbjct: 61 YLQHIRHPAQYSGKHTRHRLLINHQPPLPLVRAIFDSFDAAETLTPTLSNMLYFSCLSLF 120 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 + + LL N + ++SGKV I+++ + W L+D+ + LY SESL+KKKL+ E T+F Sbjct: 121 SMHDELVPLLFNSINTLSGKVERIISVDTSRRWYLRDVAEKLYTSESLIKKKLQDENTSF 180 Query: 179 SQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 S+ILL +RM AK L+ + + + IAE+CGY+STSYFI FR+++G +P + S Sbjct: 181 SKILLASRMARAKTLLELNQMPLTVIAEKCGYSSTSYFINTFRQYYGVTPHQYS 234 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 13/235 (5%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M VCSV+FI +F+ I + +F + +V + +R + + + T Sbjct: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 Query: 61 YLQCTNIQTVTVPVPAKFLRASN-------VPTGLLNEMIAYLNSEERNHHNFSELLLFS 113 + N + +P KF N P L+ + + + + E L S Sbjct: 61 FFIDVNNE-----LPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCIS 115 Query: 114 CLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 L++F + + + + + + K+ I++ W LKDI + +Y SESL+KK+L+ Sbjct: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 Query: 174 EQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 E T+F++IL D RM++AK LI S+N +A++CGY STSYFI AF+ ++G +P Sbjct: 176 EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTP 230 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 2/229 (0%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M +CS+I + ++F I +D F G ++++ ++ F H + E T+ Sbjct: 1 MPYICSIILVLNSFGVRIGKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVND 60 Query: 61 YLQCTNIQTVTVP-VPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 + + + +V +L LL ++A LN + + + +CL++ + Sbjct: 61 FFKNYTLSPFSVRRFYPSYLIVECEDFSLLKNLVACLNCDSKTVDVVRNQISLACLAVLS 120 Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 + K + L + S+ KV+ I++ + W+L DI LY+SESLLK+KLK E +FS Sbjct: 121 SEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEGLSFS 180 Query: 180 QILLDARMQHAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 +++L+ RM A+ LI +V K+A CGY + SYF+ FR +FG P Sbjct: 181 KLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPP 229 >UniRef50_C6UPG2 Putative envelope protein encoded within prophage CP-933N n=34 Tax=Escherichia coli RepID=C6UPG2_ECO5T Length = 237 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 8/237 (3%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M +VCSVI + N + + G +++ +R F + K + + + Sbjct: 1 MVVVCSVIMVCSPINIFLEKDTLSLKPGSVVLATKCIRALFLMHYGKVKIFDINHSIVSQ 60 Query: 61 YLQCTNIQTVT--VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 YL+ + T T VP N P L E A + S+ + L+ +CLS+F Sbjct: 61 YLEIQHKLTRTHLTDVPLYLSLEPNNPA--LAE--ALITSQRFSGDTTDMFLMMACLSLF 116 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 + + + L+ + S+S KVR I+ + W L I L++SESLLK KLK E F Sbjct: 117 ESDERILLFLSGCLSSISAKVRAIIQTDISASWTLGAIALRLHMSESLLKIKLKNEGHMF 176 Query: 179 SQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR-VSKE 233 S++LL+ RM+ A N++ G +AE+CGY+S SYFI F +++G P R VS++ Sbjct: 177 SRLLLEERMRVAVNMLCSRHGYGQAVAEKCGYSSWSYFISVFHRYYGFPPDRYVSRQ 233 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 99.4 bits (246), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 4/121 (3%) Query: 110 LLFSCLSIFAACKGFITLLTNGVLSVSGKVR--NIVNMKPAHPWKLKDICDCLYISESLL 167 L+F+ LS+F FI LL N VL + + R ++N AH W L I L +S SLL Sbjct: 117 LIFALLSVFLEDTQFIPLLLN-VLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLL 175 Query: 168 KKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNS 226 KKKL++E T++SQ+L + RMQ A LI + G S+ ++A CGY S SYFIY FR ++G + Sbjct: 176 KKKLREEGTSYSQLLTECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMT 235 Query: 227 P 227 P Sbjct: 236 P 236 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 69/102 (67%), Gaps = 1/102 (0%) Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDAR 186 +L++ +++ +V NI++ P+ WKL D+ D +++S S LK+KL +E T+FS I L AR Sbjct: 199 ILSSAQITLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSAR 258 Query: 187 MQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 M A L+R+ +VN +A +CGY STSYFI F+K+F +P Sbjct: 259 MNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTP 300 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 2/120 (1%) Query: 110 LLFSCLSIFAACKGFITLLTNGV-LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLK 168 L+ + +S+F + FI LL + ++ +V ++N A+ W L I L +S SLLK Sbjct: 133 LMLALMSLFLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLMSPSLLK 192 Query: 169 KKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 KKL+ EQTT+SQ+L + RMQ A L+R + +V K A CGY S SYFI FRKHFG +P Sbjct: 193 KKLQAEQTTYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRKHFGITP 252 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 84/144 (58%), Gaps = 2/144 (1%) Query: 94 AYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLS-VSGKVRNIVNMKPAHPWK 152 + + +E + + LLF+ LS F K F++L+ + + VS V I+ W Sbjct: 105 SMMPAETESEKERTRALLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWN 164 Query: 153 LKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYAS 211 L + CL +S SLLKKKLK E T++SQI+ RM++A N + ++G +++++++ CGY S Sbjct: 165 LSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNS 224 Query: 212 TSYFIYAFRKHFGNSPKRVSKEYR 235 TSYFI F+ +G +P ++R Sbjct: 225 TSYFISVFKDFYGMTPLHYVSQHR 248 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/95 (45%), Positives = 62/95 (65%), Gaps = 1/95 (1%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 +++ + NI+ + W LKDI D LY+S S LK+KLKQE T+FS++ L+ARM A L Sbjct: 181 TLAENIYNIIISDISRKWALKDISDSLYMSCSTLKRKLKQEHTSFSEVYLNARMNKATKL 240 Query: 194 IR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 +R E ++ ++A CGY S SYF F+KHF +P Sbjct: 241 LRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTP 275 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/137 (38%), Positives = 75/137 (54%), Gaps = 3/137 (2%) Query: 97 NSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDI 156 N E+ N ++ LLL S A G I+ + LSV KV N++ +P WKL D+ Sbjct: 160 NEEKENIATYALLLLLSGFIHDTAFAGIIS--RSAKLSVKYKVYNLLYTEPDKQWKLDDV 217 Query: 157 CDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYF 215 +++S S LK+KL E TTFS++ + ARM A L+R + SV +A CGY S SYF Sbjct: 218 SSAIFMSASTLKRKLATEGTTFSELYITARMNLASKLLRTGKYSVTNVAVLCGYDSVSYF 277 Query: 216 IYAFRKHFGNSPKRVSK 232 I F++ F +P K Sbjct: 278 IACFKRQFNITPSAFMK 294 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 67/107 (62%), Gaps = 1/107 (0%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 S+S ++R +++ PW LK+I +Y+SES +K+KL +E TTF+ +L AR+ A+ + Sbjct: 132 SLSSRIRALISKDLTKPWTLKEIAKLVYMSESTVKRKLNKEGTTFTDVLQAARLDTAQKM 191 Query: 194 I-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 + + SV+ IAE CG+ SYF FRK +G +P K+ + +++ Sbjct: 192 VCNSDASVSAIAELCGFKHASYFGACFRKEYGATPLAYRKQAQLRAN 238 >UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonella enterica RepID=SIRC_SALTI Length = 295 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 2/128 (1%) Query: 102 NHHNFSELLLFSCLSIFAACKGFITLLTNGV-LSVSGKVRNIVNMKPAHPWKLKDICDCL 160 + H++S L +S F G L + ++ KV NI+ W ++ L Sbjct: 159 DDHDYSYFSLMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKL 218 Query: 161 YISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAF 219 ++S S LK+KL E+ +FS+I LDARM A L+R+ G+++++A CGY + SYFI F Sbjct: 219 FMSVSSLKRKLAAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIF 278 Query: 220 RKHFGNSP 227 ++HF +P Sbjct: 279 KRHFKITP 286 >UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 Tax=Enterobacteriaceae RepID=D2TIS0_CITRO Length = 276 Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 18/162 (11%) Query: 77 KFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVS 136 K L SNVP L I YL S+ N E L++S LS+ + + Sbjct: 131 KRLTGSNVPQHRLVYKITYLLSKV----NDIESLVYS-LSVSTDT------------TFT 173 Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRV 196 K++ I+ + W+L D+ + L++SE ++KKL++E F+ ++LD RM HA LI Sbjct: 174 EKLKVIIEADLSRSWRLVDLANILHMSEVSIRKKLEKESNNFNALVLDIRMYHAAKLITT 233 Query: 197 -EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 + +N IA + GY STSYFI F++ FG +PK+ S + + Q Sbjct: 234 SDKHINSIANEVGYTSTSYFIRNFKEFFGITPKQFSLKVKKQ 275 >UniRef50_P0A2T2 Virulence regulon transcriptional activator virF n=9 Tax=Enterobacteriaceae RepID=VIRF_SHIDY Length = 262 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 1/98 (1%) Query: 133 LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH-AK 191 LS S ++R IV W+L DI + L +SE ++K+L+ E+ TF QILLD RM H AK Sbjct: 157 LSFSDQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAK 216 Query: 192 NLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 L+ + +N ++ G +S SYFI F +++G +PK+ Sbjct: 217 LLLNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKK 254 >UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11 Tax=Salmonella enterica subsp. enterica RepID=B5R1L9_SALEP Length = 271 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 91/169 (53%), Gaps = 14/169 (8%) Query: 78 FLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSG 137 F+ N G+L E YL + N+++ E+ +CL F+ L T+ +SVS Sbjct: 103 FIITDNGINGILFE---YLKKRKNNNNDIYEI---ACL--FSKVNNIEQLYTSLCISVSR 154 Query: 138 K----VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 VR ++ + W+LK + + L +SE ++KKL+ E T F +ILLDARMQ A L Sbjct: 155 SFSDIVRKTIDNDISTKWRLKTLSEKLNLSEVTIRKKLENENTNFYRILLDARMQKAARL 214 Query: 194 I-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 + + +NK++ G +S SYFI F ++G +PK+ +Y+ +TG Sbjct: 215 VLDSDTHINKVSYAVGMSSVSYFIKLFSDYYGLTPKQFHLKYK-HRNTG 262 >UniRef50_P23774 987P fimbrial operon positive regulatory protein fapR n=1 Tax=Escherichia coli RepID=FAPR_ECOLX Length = 260 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 5/117 (4%) Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLD 184 I+L ++ ++ S ++ ++ WKL DI + ++ISE ++K+L+QE F+Q++LD Sbjct: 142 ISLFSSVAVTFSERIVTLLFSDLTRKWKLSDIAEEMHISEISVRKRLEQECLNFNQLILD 201 Query: 185 ARM-QHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR----VSKEYRC 236 RM Q AK +IR + + IA GY S SYFI F++++G +PK+ + + RC Sbjct: 202 VRMNQAAKFIIRSDHQIGMIASLVGYTSVSYFIKTFKEYYGVTPKKFEIGIKENLRC 258 >UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 Tax=Enterobacteriaceae RepID=A6T768_KLEP7 Length = 262 Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 59/105 (56%), Gaps = 1/105 (0%) Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDAR 186 LL +S +VR ++ + PA W + + L++ ES L+++L+QE +F QI+ + R Sbjct: 157 LLVERQQDLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQESQSFRQIVEEVR 216 Query: 187 MQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 M HA ++ + +IA+ GY S S F FR+H+G PK V Sbjct: 217 MAHALGQLQTTSRPIGEIAQNSGYQSGSRFTARFRQHYGLLPKHV 261 >UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=Escherichia coli E24377A RepID=A7ZGX7_ECO24 Length = 209 Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 7/155 (4%) Query: 81 ASNVPTGLLNEMIAYLNSEERNHHN----FSELLLFSCLSIFAACKGFITLLTNGVLSVS 136 + + T +++M+ + E + HHN F L++ I K +L + + + Sbjct: 48 SRKIMTTEVDKMLLDVLKEMKGHHNDDSSFISALIYLISKIKCNDKIIESLYMSSITFFT 107 Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRV 196 KVR ++ + W L I D +SE ++K+L+ E T F+QIL+ +RM A L+ + Sbjct: 108 DKVRGVIEKDLSRKWTLAIIADVFNVSEITIRKRLESEDTNFNQILMQSRMSKAA-LLLL 166 Query: 197 EGS--VNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 E S +++I+ G +S SYFI F KHFG +PK+ Sbjct: 167 ENSYQISQISNMIGISSASYFIRIFNKHFGVTPKQ 201 >UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escherichia coli RepID=PERA_ECO27 Length = 274 Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 71/119 (59%), Gaps = 6/119 (5%) Query: 128 LTNGVLSVSGK-----VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQIL 182 + N +LS S K V ++ + + WKL D+ +++S+S L+K+L +E TF +I+ Sbjct: 154 IVNVILSASSKSIVDRVIKVIELDISKNWKLGDVSSSMFMSDSCLRKQLNKENLTFKKIM 213 Query: 183 LDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 LD +M+HA +R + ++++I+ G+ STSYFI F++++ +PK+ + Y T Sbjct: 214 LDIKMKHASLFLRTTDKNIDEISCLVGFNSTSYFIKVFKEYYNTTPKKYNGVYSITQGT 272 >UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8Q2W3_9ENTR Length = 285 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-V 196 ++ ++ P W K D L +SES L+++L+QE F Q+LLD RM HA LI+ Sbjct: 191 RLSKLLREAPDKGWTAKVAGDALAMSESTLRRRLRQEGVRFEQLLLDIRMHHALMLIQTT 250 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 ++ ++A+ CGY S S F FR FGNSP ++ Sbjct: 251 HWNLAQVADACGYKSVSRFTERFRYRFGNSPAQL 284 >UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=Pectobacterium RepID=D0KCL6_PECWW Length = 288 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 1/97 (1%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI 194 VS ++R +++ +P W + L +SE+ L+++L EQT F +LL+ RMQHA L+ Sbjct: 191 VSTQLRALISEEPERHWTAQSAGRLLAMSEATLRRRLSAEQTRFEVLLLETRMQHAMMLV 250 Query: 195 RVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 + S+ ++AE CGY S++ F F+ FG SP ++ Sbjct: 251 QTTSWSMQRLAEACGYKSSARFSERFKTRFGCSPTKI 287 >UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S8T9_HAHCH Length = 278 Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 8/126 (6%) Query: 103 HHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYI 162 H ELL + A G++ +N + KVR ++ +P W +DI + L + Sbjct: 146 EHRVCELLQW------LANAGYV-FRSNERADIQRKVRLLIGAEPDKKWSSQDIAESLAL 198 Query: 163 SESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRK 221 SE+ L++KL +E FS+IL+D RM A +L++ + ++ IA Q GY S S F F++ Sbjct: 199 SEATLRRKLAKEGNAFSEILVDVRMSLALSLLQSTDAAIASIAYQVGYESASRFSVRFKQ 258 Query: 222 HFGNSP 227 FG SP Sbjct: 259 RFGFSP 264 >UniRef50_Q04819 ORF11 n=5 Tax=Salmonella enterica subsp. enterica RepID=Q04819_SALTY Length = 259 Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 2/109 (1%) Query: 109 LLLFSCLSIFAACKGFITLLTNGV-LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLL 167 L F+ +S F F L + S++ +V ++N + W + + LY+S SLL Sbjct: 116 FLTFALVSAFCEQDIFFPFLKTCLKQSMADQVATVINRNVSENWTIHRVAGELYVSVSLL 175 Query: 168 KKKLKQEQTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYF 215 KKKLK+E T++++ILL+ RM+ A LI + EG+V K+A QCGY+S F Sbjct: 176 KKKLKEENTSYTRILLECRMKKASELIVMQEGAVKKVAYQCGYSSVPVF 224 >UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Enterobacteriaceae RepID=ENVY_ECOLI Length = 253 Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 2/124 (1%) Query: 106 FSELLLFSCLSIFAACKGFITLLTNGVLS-VSGKVRNIVNMKPAHPWKLKDICDCLYISE 164 + LLF+ LS F FI LL + S V V I+ H W L+ + L +S Sbjct: 117 LTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSP 176 Query: 165 SLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHF 223 SLLKKKLK E T++SQI+ + RM++A ++ ++ ++ ++A+ CGY+STSYFI F+ + Sbjct: 177 SLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFY 236 Query: 224 GNSP 227 G +P Sbjct: 237 GLTP 240 >UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Escherichia coli RepID=Q8GA34_ECOLX Length = 271 Score = 73.2 bits (178), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 68/112 (60%), Gaps = 1/112 (0%) Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLD 184 I+L+ + ++ + K+RN + P+ W L I D ISE ++K+L+ E T+FS + L Sbjct: 159 ISLMASTAVTFTEKIRNQIENNPSKRWCLNMIADEFNISEISVRKRLESEGTSFSNLFLK 218 Query: 185 ARMQHAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 RM+ + L++ E + +I++ G+ STSYFI F+ +FG +PK++ +R Sbjct: 219 VRMEKSMQLLLQNELQICQISKSVGFRSTSYFIKIFKDYFGITPKQLIIYFR 270 >UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PNS5_VIBCH Length = 267 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 5/123 (4%) Query: 107 SELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESL 166 S +L+ + +F +CK + + +S KV + P W L + LY+SES Sbjct: 140 SNILVSLLIEVFKSCKK---TQQSPIGVISRKVLEKIIECPYERWSLSMMAKELYMSEST 196 Query: 167 LKKKLKQEQTTFSQILLDARMQHAKNLI--RVEGSVNKIAEQCGYASTSYFIYAFRKHFG 224 LK+KLK E TF+++ ARM HAK L+ + + +AE CG+ SYF+ F+K+FG Sbjct: 197 LKRKLKSEDQTFTELYNFARMSHAKKLLLSNRDIKIATVAEMCGFNHVSYFVSCFKKYFG 256 Query: 225 NSP 227 SP Sbjct: 257 LSP 259 >UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax=Escherichia RepID=CSVR_ECOLX Length = 301 Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 7/147 (4%) Query: 84 VPTGLLNEMIAYLNSEERNHHN----FSELLLFSCLSIFAACKGFITLLTNGVLSVSGKV 139 + T +++M+ + E HHN F L++ I K +L + + + KV Sbjct: 109 IMTTEVDKMLLNVLREMMGHHNDDSSFISALIYLISKIKCNDKIIESLYMSSITFFTDKV 168 Query: 140 RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGS 199 R ++ + W L I D +SE ++K+L+ E T F+QIL+ +RM A L+ +E S Sbjct: 169 RGVIEKDLSRKWTLAIIADVFNVSEITIRKRLESEDTNFNQILMQSRMSKAA-LLLLENS 227 Query: 200 --VNKIAEQCGYASTSYFIYAFRKHFG 224 +++I+ G +S SYFI F KHFG Sbjct: 228 YQISQISNMIGISSASYFIRIFNKHFG 254 >UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein n=3 Tax=Yersinia RepID=C4T4E3_YERIN Length = 269 Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 1/96 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE 197 +V+ ++ + PA W + D+ L+I +S L++KL QE +F IL + RM A + ++ Sbjct: 169 QVQQVLLLDPARNWSVSDVARSLHIGDSTLRRKLMQEDRSFRMILEEVRMGCALHALQTT 228 Query: 198 G-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 S+ +IA Q GY S S F F++HFG +P+R+ + Sbjct: 229 SLSIGEIAAQHGYISPSRFTSRFQQHFGLTPRRLRE 264 >UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory protein n=3 Tax=Escherichia coli RepID=Q8GA53_ECOLX Length = 290 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 5/134 (3%) Query: 100 ERNHHNFSELLLFSCL--SIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDIC 157 E +HHN +F C S+ A I + + +V ++ A W L+ + Sbjct: 153 EDSHHNRILSFIFFCKESSVMDAILPLIYF--SAATTFCNRVIELIESNIAKKWTLRLLS 210 Query: 158 DCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL-IRVEGSVNKIAEQCGYASTSYFI 216 + ISE ++KKL+ E F +++L+ RM+ A L I E SV+KIA++ GY + SYFI Sbjct: 211 EEFSISEIAIRKKLEAEGVIFRELILEIRMKKAMTLLIAGELSVSKIADKVGYNNISYFI 270 Query: 217 YAFRKHFGNSPKRV 230 FR+ FG +PK++ Sbjct: 271 SHFRQFFGMTPKQL 284 >UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Shewanella RepID=A6WTM9_SHEB8 Length = 252 Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 58/95 (61%), Gaps = 1/95 (1%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 SV+ ++++ PA PW+ ++I D L++S + L++KL E T+F Q+L++ R+ H + Sbjct: 151 SVTQAALALMSVSPAAPWQQEEIADKLHMSTASLRRKLALEDTSFRQLLVEVRLSHGLAM 210 Query: 194 IRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 ++ G + ++A CGY S F F++ FG +P Sbjct: 211 LQNSGEPLLQVALACGYQSAEKFSLRFKQQFGLTP 245 >UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKU1_9GAMM Length = 348 Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 5/117 (4%) Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 V +G+VR ++ P H ++D L +SE L+++L +E TT+ +++LD RM+ Sbjct: 235 QAVQGFTGQVRRLLANAPGHHPSIEDAAGKLAMSERSLRRRLSEEGTTYKEVVLDFRMEL 294 Query: 190 AKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTG 245 A + +R E ++ ++A GYA S F F +++G +P E+R T TG Sbjct: 295 ASSYLRGREMTIQEVAFLAGYADASNFHRTFSRYYGATP----GEFRAGEQTAAPTG 347 >UniRef50_A6B243 Transcriptional activator of virulence loci n=4 Tax=Vibrio parahaemolyticus RepID=A6B243_VIBPA Length = 247 Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 61/97 (62%), Gaps = 1/97 (1%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN- 192 S+S ++ +++ + H W ++I L +S++ L +++ QE+TT S ++L ARM A Sbjct: 133 SISERIHRLISKQIQHRWTAEEISKNLNMSKATLMRRISQEKTTLSDLILSARMNKAAYL 192 Query: 193 LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 L++ + + K+A G++S SYF F++ +GNSPK+ Sbjct: 193 LLKKKHPIKKVAHLTGFSSASYFCKKFKETYGNSPKQ 229 >UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GN71_SORC5 Length = 329 Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRV-E 197 VR +V PA PW ++ L +S++ L+++L + +F +L R+ AK L+R Sbjct: 216 VRALVRRDPARPWAAPEVARALGVSDATLRRRLGAKGVSFRALLWKERLDLAKGLLRSGR 275 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMN 243 V ++A CGY S S F FR+ G SP EYR + N Sbjct: 276 HGVLEVATACGYDSASRFAEQFRRSEGVSP----SEYRARHRASAN 317 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 2/124 (1%) Query: 111 LFSCLSIFAACKGFITLL-TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKK 169 L + L + A KG + LL +S + K+ + P+ + ++ +C +S++ L + Sbjct: 136 LVNGLYQYLAEKGQLHLLYAPQEISWTEKLTQFFSQDPSQNYTIEQVCQQFGLSKATLMR 195 Query: 170 KLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 +L E T F ++L RM HA +L++ + +V ++A+QCGY S F F+K FG SPK Sbjct: 196 RLNDESTQFREVLAQVRMGHALSLLQEKSQTVLELAQQCGYQSEVRFTQRFQKQFGLSPK 255 Query: 229 RVSK 232 + K Sbjct: 256 QYQK 259 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 1/98 (1%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG 198 + ++ P W + D+ L+ ++S L++ L +E +FSQ+LLD RM A N + Sbjct: 172 IARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSN 231 Query: 199 -SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 S+++I+ + G+ S +YF AF++ +G +P + R Sbjct: 232 YSISQISNRSGFGSAAYFCDAFKRKYGITPSQFRTTSR 269 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 1/98 (1%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG 198 + ++ P W + D+ L+ ++S L++ L +E +FSQ+LLD RM A N + Sbjct: 202 IARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSN 261 Query: 199 -SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 S+++I + G+ S +YF AF++ +G +P + R Sbjct: 262 YSISQIGHRSGFGSAAYFCDAFKRKYGITPSQFRATSR 299 >UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RT58_SEROD Length = 294 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 4/102 (3%) Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 GVL ++ +++ P W + + L +SES L+++L++E +F ++L+D RM H Sbjct: 195 QGVLP---RLSHLLRASPETDWTARSAGEALAMSESTLRRRLREEGGSFEKLLVDIRMHH 251 Query: 190 AKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 LI+ ++ ++A+ CGY S S F F + FG P R+ Sbjct: 252 GLMLIQTTRWNMAQVADACGYKSVSRFAERFTQRFGLPPSRL 293 >UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=Enterobacteriaceae RepID=A4TK67_YERPP Length = 291 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 8/135 (5%) Query: 104 HNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYIS 163 H ELLL+ + + + N +S KVR + P W ++ + + +S Sbjct: 144 HRMLELLLW-------LAQRDVKFILNDGNGLSEKVRRCLASDPHKIWSASEVAEHMTMS 196 Query: 164 ESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKH 222 E +L++KL E +++D RM A L++ + ++ IA Q GY S+S F FRK Sbjct: 197 EVVLRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQIGYESSSRFAERFRKR 256 Query: 223 FGNSPKRVSKEYRCQ 237 FG +P + +R Q Sbjct: 257 FGFAPTAIRGHHRLQ 271 >UniRef50_A6B6J4 Putative CFA/I fimbrial subunit D n=2 Tax=Vibrio parahaemolyticus RepID=A6B6J4_VIBPA Length = 241 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 1/96 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RV 196 K+ +V+ W L+++C Y S+S L +KLK QT+ QI+ +AR+ +A LI Sbjct: 134 KIYRLVSKDLKKKWSLEEVCKLTYTSKSTLNRKLKDNQTSMGQIISNARLDYATILITNT 193 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 SV++I+ G+ STSYF F++ G SPK+ K Sbjct: 194 SLSVDEISMLSGFNSTSYFCKKFKESHGFSPKQYRK 229 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 24/187 (12%) Query: 66 NIQTVTVPVPAKFLRAS-------NVPTGLLNEMIAYLNSEE--------------RNHH 104 N QTV +PVP + + VP+ L + L E R Sbjct: 76 NYQTVALPVPRQLFEDAYARMGSIAVPSRPLPASASSLPEEAAVLFDYCCQPGNLARLPG 135 Query: 105 NFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISE 164 ++ L ++ FA C L + ++R ++ PA W L +SE Sbjct: 136 AIAKARLMELVTWFALCGA--VLGEGQSPRLEDRLRQMIESDPAFDWTLAHAARSFNMSE 193 Query: 165 SLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHF 223 + L+++L E T FS+IL D RM A LI + ++A + GY S S F F++ F Sbjct: 194 ATLRRRLAAENTGFSEILSDTRMNRALGLIHTTTLPMAQVALEVGYDSPSQFSARFKERF 253 Query: 224 GNSPKRV 230 G SP+ V Sbjct: 254 GVSPRHV 260 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 6/116 (5%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG 198 + +++ +P W L D+ L+ + S L++ L +E +F Q+LLD RM A N + Sbjct: 173 ITHLITQEPQKKWHLDDVAKALFTTPSTLRRHLNREGVSFRQLLLDVRMGMALNYLTFSN 232 Query: 199 -SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALAI 253 SV +I+ +CG+ S +YF F++ + +P ++R QS N N + L++ Sbjct: 233 YSVFQISHRCGFGSNAYFCDVFKRKYNMTP----SQFRLQSRQS-NDPNFITNLSL 283 >UniRef50_C3K2A2 Putative putative AraC-family regulatory protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K2A2_PSEFS Length = 384 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 53/81 (65%) Query: 153 LKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYAST 212 L I + L++S LK++LK+E TTF ++L D R ++A NL++ ++ +IAE+ G++ Sbjct: 297 LSSISELLHVSPRTLKRRLKEEGTTFRKLLADVRSRNAINLLKDGHNLTEIAERLGFSDL 356 Query: 213 SYFIYAFRKHFGNSPKRVSKE 233 S F AF++ G SP + S++ Sbjct: 357 SSFSQAFKRWHGISPSQFSQQ 377 >UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2HZ04_ACIBC Length = 341 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 61/97 (62%), Gaps = 1/97 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RV 196 +VR+I++ H ++++ + L++S+ LK++L E T+FS ++ + R +HA +L+ R Sbjct: 242 RVRDILSNSEQHYLSIENVAEYLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRT 301 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + S+ +IA++ GY+ + F AF++ G SP K+ Sbjct: 302 DYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRKD 338 >UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TWU6_MARAV Length = 347 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RV 196 +VR ++ P KL + LY+SE LK++L++E+ +F ++ R++ A++L+ Sbjct: 243 RVRRVIETSHPFPPKLARVASTLYVSERTLKRRLQEEEASFQALVDQVRLERARDLLAST 302 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 ++++IA+ GYA + F AF++ G SP Sbjct: 303 TMNLSQIADSLGYADAANFTRAFKRWTGLSP 333 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 32/213 (15%) Query: 32 MVDNAVRTHFEPYERHFK---EIGFTENTIKKYLQCTNIQTVTVPV----------PAKF 78 MVD + H+E ER F EIG + + + P P F Sbjct: 135 MVDTEQKLHYE-LERLFSQWAEIGPAIGHSRHWFSRVELNYKAPPYRAMYSEVLGDPVLF 193 Query: 79 LRASN---VPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSV 135 R N P LL++ +++ N ++L C ++ K T+G+ Sbjct: 194 EREHNQLSFPADLLDQPLSFANEAA------AQLCEQQCAALLGELK-----RTDGI--- 239 Query: 136 SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR 195 G+VR I+ +P + ++ L + E L+++L E TT+ Q++L+ RM+ A + +R Sbjct: 240 EGEVRRILANQPGKYPGIIEVARALAMGERTLRRRLADEDTTYKQVVLEFRMELAASYLR 299 Query: 196 VEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 S+ +IA GYA S F F KH G +P Sbjct: 300 GNAMSIQEIAYVTGYADPSNFHRTFNKHQGLTP 332 >UniRef50_C2LMQ1 Virulence regulon transcriptional activator VirF n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LMQ1_PROMI Length = 263 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Query: 136 SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR 195 S KV++I+ H W LK+I L+ISES L+KKL+ E+T F +L RM HA NL+ Sbjct: 158 SVKVKDIIISDLQHSWSLKEISSKLFISESSLRKKLEAEKTNFMTLLTTVRMAHAMNLLA 217 Query: 196 VEG-SVNKIAEQCGYASTS 213 ++ +I+ GY +TS Sbjct: 218 TTNLTIGQISSLSGYKNTS 236 >UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTA1_CHRVO Length = 266 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 3/109 (2%) Query: 126 TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDA 185 LL S++ +R ++ + PA PW ++ L + S L+++L +E F IL + Sbjct: 157 PLLREKTDSLTQGLRQLMMLDPAAPWSVETAARRLNLGASTLRRRLAEEDAGFQAILEEV 216 Query: 186 RMQHAKNLIRVEG--SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 RM A ++ +G S+ +IAE GYAS S F FR+ +G +P + + Sbjct: 217 RMGLALQQVQ-DGRRSIAQIAEASGYASASRFAARFRQRYGLTPSALRR 264 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRV- 196 ++R ++ A W + I L++SE+ L++ L++ TTF ++L D RM A L+++ Sbjct: 169 QIRKMIASNTAFEWTAETIARQLHLSETSLRRALQKSDTTFREVLTDVRMSRALTLLQIT 228 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 + V +IA + GY S S F F++ FG P Sbjct: 229 KWQVARIANEVGYDSPSRFTVRFKQRFGFLP 259 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI 194 +S ++R ++ A W++ D+ L +SE+ L+++L E +F ++L + +M A L+ Sbjct: 164 LSKQIRQLIAQDMAASWQIADVAQRLGMSEATLRRRLANEGASFRELLGNIKMMRALTLL 223 Query: 195 RVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + V ++A GY S + F FR HFG +P V K Sbjct: 224 QTSPLGVAQVAYAVGYESPARFAAKFRAHFGCTPSDVRK 262 >UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n=2 Tax=Edwardsiella RepID=C5BFY6_EDWI9 Length = 266 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 5/101 (4%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE 197 +++ ++ + PA+ W+ DI L+++ES L+++L E F IL D R+ A L+ ++ Sbjct: 167 QIQQLLLLDPAYAWQATDIAQRLHMAESTLRRRLNAEGKRFRDILDDVRLGQA--LLALQ 224 Query: 198 GS---VNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 + IA Q GYAS S F F + +G +P + + R Sbjct: 225 SGNTPIGDIASQSGYASPSRFTARFVRRYGLTPSALRQAMR 265 >UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=Dickeya RepID=C6CEQ2_DICZE Length = 282 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 1/104 (0%) Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLD 184 + L G L+ S +VR +V +P W + L + S L ++L QE T + + D Sbjct: 174 VVLAPPGALNWSERVRRLVAQRPYDHWSASRVAQALSTTASTLNRRLAQEGCTITTCVRD 233 Query: 185 ARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 R++ A L++ E V IA GY S S F AFR+ FG P Sbjct: 234 TRLETAMVLLQSSERPVAAIALDVGYESHSKFTAAFRRRFGVVP 277 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 2/114 (1%) Query: 121 CKGFITLL-TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 +G+ +LL + S KV ++ +PA W L +I L +SES L+++L+ E F Sbjct: 151 ARGYGSLLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLLAVSESTLRRRLQSENAGFR 210 Query: 180 QILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +L R+ +L + + IA+QCGY S S F F++ FG +P + + Sbjct: 211 DLLESVRLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERFKQRFGMTPSELRQ 264 >UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=Proteobacteria RepID=Q21KL2_SACD2 Length = 270 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Query: 131 GVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA 190 G S+S KV I++ + W + I L +SES +++KL E T+ + AR+ Sbjct: 163 GAPSLSAKVHAIISTDLTYDWTMDVITQKLAMSESTIRRKLTAEGTSLQAVKDSARLSFG 222 Query: 191 KNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + ++ +N IAEQCGY S S F F++ FG +P + K Sbjct: 223 LHQVQSTFQPINHIAEQCGYLSQSRFTNKFKQLFGVTPTALRK 265 >UniRef50_Q399T6 Transcriptional regulator, AraC family n=18 Tax=Bacteria RepID=Q399T6_BURS3 Length = 325 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 20/166 (12%) Query: 89 LNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLL--TNGVLSVSGKVRNIVNMK 146 L ++ + E R +++L L + I L T+G + G VR + + + Sbjct: 163 LTTLVQLVRDESRAQRPARDIVLARLLEVL-----LIEALRFTSGTNASPGLVRGLADSR 217 Query: 147 -----------PAHPWKLKDICDCLYISESLLKKKLKQEQTTFS-QILLDARMQHAKNLI 194 PAHPW + ++ +S S ++ + + LL RM AK+L+ Sbjct: 218 LAAAIRRMHERPAHPWTIVELAKEAALSRSTFFERFSRAVGLAPMEYLLTWRMALAKDLL 277 Query: 195 RV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 R EG + +IA + GY+S S F AF +H G P + ++E + ++ Sbjct: 278 RRNEGRIAEIAGRVGYSSASTFSVAFTRHVGRPPAQYAREEQATAN 323 >UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=Xanthomonadaceae RepID=B4SIX4_STRM5 Length = 274 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 58/107 (54%), Gaps = 1/107 (0%) Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQI 181 +G LL S+ ++R+ + +PA W+ +D+ + +S + L+++L E+T+ Q+ Sbjct: 165 QGHGNLLLPQAPSLGEQIRDRIAAEPARDWQSRDVEEQFALSGATLRRRLAAERTSLRQL 224 Query: 182 LLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 L +AR+ H L+ + + +A + GY S + F F + +G +P Sbjct: 225 LTEARLAHGMTLLYTTDLPLKTVAARAGYRSAASFSKRFAEQYGLAP 271 >UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=Pseudomonas aeruginosa group RepID=A4XTI6_PSEMY Length = 360 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 1/100 (1%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 V+G+VR ++ P ++ + L++S L+++L +E ++F + + R A L Sbjct: 259 GVAGRVRQLLLQTPGQMADMEQVASRLHLSSRTLRRRLIEEGSSFRALQDEVREALADEL 318 Query: 194 IRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + G S+ +IAE+ GY S FI+AF++ G +P R + Sbjct: 319 LAAGGLSLEEIAERLGYGELSNFIHAFKRWKGTTPGRYQR 358 >UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein n=6 Tax=Vibrio RepID=Q7MCG4_VIBVY Length = 268 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 5/102 (4%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 S K+ + +P+ +++D C IS++ L ++LK+E T + ++L R+ HA NL Sbjct: 165 SFEQKLSEFIAQQPSKDHQIEDACQHFAISKATLIRRLKEEGTQYREVLSKVRLSHALNL 224 Query: 194 IRVEGSVNKIAE---QCGYASTSYFIYAFRKHFGNSPKRVSK 232 + + K AE CGY S F FR+ FG SP+ K Sbjct: 225 M--QQGHRKTAELSLMCGYQSPDKFSQRFRQRFGLSPREYCK 264 >UniRef50_UPI0001C3522D two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3522D Length = 495 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 11/154 (7%) Query: 86 TGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA----ACKGFITLLTN-----GVLSVS 136 T L+ E+I YL +++ N ++S +I C LL+ G S Sbjct: 334 TELMKEIIHYLPDDQKPDLNKVAEKIYSSANIVELMDMTCSQAKKLLSQTQKNQGSCLKS 393 Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT-TFSQILLDARM-QHAKNLI 194 K+R + P L DI YIS + L K+E + + + R+ Q AK L+ Sbjct: 394 DKIRQYIYQNYTQPLSLNDISSHFYISPNYLCSVFKKETGCNLMKFINEYRLEQAAKLLL 453 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 E VNKIAE G+++ SYF FR ++G SP+ Sbjct: 454 ETEMKVNKIAETVGFSNPSYFSQRFRDYYGESPE 487 >UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like protein n=2 Tax=Vibrio fischeri RepID=Q5DYZ5_VIBF1 Length = 261 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 8/148 (5%) Query: 87 GLLNEMIAY-LNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNM 145 LL EM + L+S + HH LF+ L + S+ K+ + Sbjct: 116 SLLIEMSSQNLSSNVQKHH------LFAFYQQLVEVGALHVLFSESHDSLQNKLSAYFSK 169 Query: 146 KPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIA 204 PA ++L ++ +S + L ++L Q+ T F +L + RM HA +L++ + S +A Sbjct: 170 DPAENYQLDEVSHAFSMSRATLIRRLNQDGTNFRTVLANVRMSHALSLMQERKQSQLDLA 229 Query: 205 EQCGYASTSYFIYAFRKHFGNSPKRVSK 232 QCGY S + F F + FG +PK+ K Sbjct: 230 LQCGYQSETRFSQRFHQQFGITPKQYMK 257 >UniRef50_A3M7C3 Putative transcriptional regulator (AraC family) n=2 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M7C3_ACIBT Length = 339 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 55/81 (67%), Gaps = 3/81 (3%) Query: 151 WKLKDICDCLYISESLLKKKLKQEQTTFSQILLD-ARMQHAKNLI-RVEGSVNKIAEQCG 208 +K+KD+ + L+++E L+++L +E TF QILLD R +HAK L+ E S++ I+E+ G Sbjct: 251 FKMKDVAEKLHLTERTLQRQLAKEGVTF-QILLDQVRERHAKKLLNHHEYSISYISEKLG 309 Query: 209 YASTSYFIYAFRKHFGNSPKR 229 Y+ ++F AF++ +PK+ Sbjct: 310 YSEVTHFTRAFKRWTNQTPKQ 330 >UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GLT9_9BURK Length = 329 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 4/104 (3%) Query: 132 VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAK 191 V V+G+VR I+ L+D+ L IS L+++L +E +FS +L R Q A+ Sbjct: 226 VEGVTGQVRRILLGPMGLLSTLEDVARSLSISPRSLRRRLAEEGVSFSDLLDAERQQLAE 285 Query: 192 NLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 L+ + ++++A GY T+ F AFR+ + SP EYR Sbjct: 286 QLLSTQMKLDEMALHLGYGDTASFTRAFRRWYNCSP----GEYR 325 >UniRef50_C6CT66 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT66_PAESJ Length = 262 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 48/86 (55%), Gaps = 4/86 (4%) Query: 150 PWKLKDICDCLYISESLLKKKLKQEQT--TFSQILLDARMQHAKNLI-RVEGSVNKIAEQ 206 P ++DI D L+++ S K EQT TFS L R+Q AK L+ S+N+IAE+ Sbjct: 168 PVTMRDIADHLHMNASYFSVLFK-EQTGLTFSDYLTRRRVQRAKELLTNTRLSINEIAEK 226 Query: 207 CGYASTSYFIYAFRKHFGNSPKRVSK 232 GY + YF+ FR H G SP + K Sbjct: 227 AGYQTAKYFVKVFRSHEGVSPGQYRK 252 >UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=Alphaproteobacteria RepID=B6RAA0_9RHOB Length = 263 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-V 196 KVR+++ ++ W+ D+ +SE+ ++ L + F+++LL R++ L++ Sbjct: 165 KVRSLIETDLSYAWRATDVASHFAMSEATFRRWLAKSGHGFAKVLLHTRLEKGLTLLQST 224 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 ++ IA CG+ + S+F AF+K FG PK + Sbjct: 225 HEPISNIALDCGFNTPSHFSEAFKKRFGIRPKEI 258 >UniRef50_A9FPY9 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FPY9_SORC5 Length = 343 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Query: 153 LKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYAST 212 L D+ L +E L+++L+ E+T+F +++ + R A +L+ SV + A + G++ T Sbjct: 255 LDDVARSLGTTERTLRRRLEVERTSFRKLVEEMRRDRAADLL-ARSSVTETALRLGFSDT 313 Query: 213 SYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 + F +AFR+ FG P+ + H G Sbjct: 314 TAFSHAFRRWFGRPPRELRGARGAAGHQG 342 >UniRef50_Q7MJE3 AraC-type DNA-binding domain-containing protein n=1 Tax=Vibrio vulnificus YJ016 RepID=Q7MJE3_VIBVY Length = 243 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 5/95 (5%) Query: 142 IVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN-LIRVEGSV 200 I+N W K+IC L++S S L + LK E T I+L R+ +++ L+ S+ Sbjct: 146 IINSDIKKKWNYKEICSLLFVSHSTLYRTLKNEGKTLKMIVLHIRIINSQKLLVNTNMSI 205 Query: 201 NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 N+I+ +CG+ S SYF F+ SP EYR Sbjct: 206 NEISNRCGFNSPSYFSRKFKDSVKMSP----TEYR 236 >UniRef50_D1Y5U1 Putative two-component response regulator n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y5U1_9BACT Length = 284 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 153 LKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYAST 212 L++ + +S L + ++E F +L DARMQ A+ L+ SV + A + GY + Sbjct: 194 LEETAKHVGVSPGHLSRLFREEGVRFMDVLKDARMQRARGLLLAGASVRQAARESGYGNV 253 Query: 213 SYFIYAFRKHFGNSPKRVSKEYRCQSHTGMN 243 +YF AF+K FG +P S R + TG N Sbjct: 254 AYFGLAFKKVFGVAP---STLRRRPALTGEN 281 >UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=Cupriavidus RepID=Q46N37_RALEJ Length = 322 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 109 LLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLK 168 +LL + +S +G + LL + ++ K + V P PW ++ + +S + L Sbjct: 187 VLLRTLISRGTVTRGVLALLADTRMA---KAVDAVVGSPERPWTIESLAQSANVSRATLA 243 Query: 169 KKLKQ-EQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNS 226 ++ Q T +++ RM+ A L++ + S +AE+CGYAS + F AF FG Sbjct: 244 RRFTQLGGITPLELVTTLRMERAARLLQQDNLSAAAVAERCGYASQAAFGRAFSGQFGVG 303 Query: 227 PKRVSKEYRC 236 P ++ R Sbjct: 304 PGAYRRQQRA 313 >UniRef50_UPI0001C37D6C ggdef domain n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37D6C Length = 748 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 6/110 (5%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-R 195 ++R + P W + I D LY+S+S L+K K + + L++ R++ AK L+ Sbjct: 643 QLRGKMRKHPEEQWNISTIADSLYLSKSYLQKIYKTYFNKSIIEELIEFRLEKAKELLTE 702 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTG 245 ++ I+ +CGY+S +YF+ FR G SP EYR + N G Sbjct: 703 TNMTITDISHECGYSSYNYFVRQFRHSEGVSP----TEYRNSKESDKNEG 748 >UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CUB1_AGRT5 Length = 246 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 8/131 (6%) Query: 104 HNFSELLLFSCLSIFAACKGFITLLTNGV-LSVSGKVRNIVNMKPAHPWKLKDICDCLYI 162 H E+LL A +G + L+ V SV+ VR ++ + H W + L + Sbjct: 115 HRLLEVLLI------LAEQGALPLMPKYVDGSVTEAVRLLIRHRLDHAWSTAAVAASLSM 168 Query: 163 SESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRK 221 SE+ L+++L+ E + +LL RMQ A ++ + V + GYAS S+F F+ Sbjct: 169 SEATLRRRLRDENQSLRALLLAERMQAAYLILSDRDADVAEAIAATGYASRSHFSRRFQD 228 Query: 222 HFGNSPKRVSK 232 FG +P V + Sbjct: 229 AFGQAPSTVRR 239 >UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGM0_SALAR Length = 296 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 1/107 (0%) Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDAR 186 +L+ L+ S KV +++ + W+ KD+ + +S S KKK+ ++ + S + + Sbjct: 176 ILSYSSLTTSEKVASLIMSDYSKNWQSKDLAMQMNMSVSTFKKKMYKDTGSVSSYITKIK 235 Query: 187 MQHA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 M A + L R +N IA GY S+SYF F+KHF P V K Sbjct: 236 MIEALRQLRRTNRPINSIAISLGYTSSSYFTSVFKKHFKIFPSEVRK 282 >UniRef50_C0Z4C7 Probable two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z4C7_BREBN Length = 534 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 6/86 (6%) Query: 156 ICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGSVN-KIAEQCGYASTS 213 +C+ L+IS K+E +TTF LL RM+ AK L+R + +IAE+ GY + Sbjct: 450 VCEQLHISLGYFSGIFKKETKTTFVSYLLSLRMEKAKELLRTTDLKSFEIAEKVGYTDPN 509 Query: 214 YFIYAFRKHFGNSPKRVSKEYRCQSH 239 YF ++FRK+ G S +KEYR QS Sbjct: 510 YFSFSFRKYTGMS----AKEYRSQSE 531 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 153 LKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYA 210 LKD+ + ++++ S K++ Q TFS+ L RMQ AK L+ + +V +IAE+CGY Sbjct: 173 LKDVAEHVHLNPSYFSTLFKEQMQLTFSEYLTRRRMQRAKELLMTTDMTVAEIAEECGYR 232 Query: 211 STSYFIYAFRKHFGNSP 227 + YFI+ F++ G +P Sbjct: 233 TAKYFIHLFKEMEGKTP 249 >UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNX7_9GAMM Length = 401 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 51/77 (66%), Gaps = 1/77 (1%) Query: 153 LKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYAS 211 LK + + L++SE L+++L +EQT+F ++ + R + A+ L++ + S+ +IAE+ GYA Sbjct: 311 LKQVAERLHLSERTLQRQLAKEQTSFQLLIAEVRRKQAEFLLKQQHLSIEQIAERLGYAD 370 Query: 212 TSYFIYAFRKHFGNSPK 228 S+F AF+K +PK Sbjct: 371 ISHFSRAFKKWTNVTPK 387 >UniRef50_Q3KCK3 Putative transcriptional Regulator, AraC family n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KCK3_PSEPF Length = 350 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 134 SVSGKVRNIV-NMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN 192 ++ G VR ++ N+ P+ + + DC+ ++ L++ L +E T+F Q+L + R Q A+ Sbjct: 231 AMPGYVRQLLRNLLPSGRATIDRVADCMAVTPRSLQRHLAEENTSFQQLLDETRQQLARK 290 Query: 193 LIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNS 226 ++V S+ ++A GYA S F AF + FG S Sbjct: 291 YLQVPTISLPQVAHLLGYADVSTFSRAFHRWFGVS 325 >UniRef50_A7HAQ8 Helix-turn-helix-domain containing protein AraC type n=9 Tax=Bacteria RepID=A7HAQ8_ANADF Length = 356 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 4/113 (3%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIR 195 G+ +++ +PAHPW L ++ + +S S L ++ Q Q L RMQ A L+ Sbjct: 244 GRALALLHGRPAHPWTLDELARKVALSRSALAERFTQLVGRPPMQYLAGWRMQLAAGLLL 303 Query: 196 VE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPK--RVSKEYRCQSHTGMNTG 245 + V+++A + GYAS + F AF+K G P R S+ + TG Sbjct: 304 GDSAGVSQVAAEVGYASDAAFSRAFKKAVGVPPAAWRRSRSAKPVPGAAATTG 356 >UniRef50_A4APJ2 Probable serine/threonine kinase n=2 Tax=unclassified Flavobacteriales (miscellaneous) RepID=A4APJ2_9FLAO Length = 686 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 153 LKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRV--EGSVNKIAEQCGY 209 + ++ D + +S S L +K+K+E Q + SQ + + R+Q L++ E +V++I+ Q G+ Sbjct: 30 VSELADAMNMSRSNLLRKIKRETQLSASQFIREIRLQEGMELLKSYSELTVSEISHQVGF 89 Query: 210 ASTSYFIYAFRKHFGNSPKRVSK 232 STSYFI FR+ +G P V K Sbjct: 90 GSTSYFIKCFREQYGYPPGEVGK 112 >UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=Proteobacteria RepID=Q0B4N6_BURCM Length = 373 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 133 LSVSGKVRNIVNMKPAH-PWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAK 191 + S VR + P + P+ L DI + S LK++L++E TTF +L AR A+ Sbjct: 260 VGTSEMVRQYLTATPGNVPFSLDDIARLMNTSPRTLKRRLQEEGTTFRTLLAQARGAMAE 319 Query: 192 NLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 L+ S+ ++AE+ G++ S F AF++ +G P Sbjct: 320 TLLGDAHLSLTEVAERLGFSDLSSFSQAFKRWYGVPP 356 >UniRef50_C7PF35 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PF35_CHIPD Length = 326 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 153 LKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYA 210 L +I +IS S LKK K+ EQ T L + RMQ A L++ + ++ IA++ GY+ Sbjct: 238 LSEIAGAFFISASKLKKDFKKSEQQTVLAYLQEQRMQRAMQLLQASDNKLSHIAQEVGYS 297 Query: 211 STSYFIYAFRKHFGNSPKRVSKEYR 235 + S F FRKHF SPK V R Sbjct: 298 NLSSFTREFRKHFDCSPKVVRLNIR 322 >UniRef50_UPI0001693CE5 response regulator receiver protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693CE5 Length = 425 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 153 LKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYAS 211 L + D LY++ S L + KQE TF+Q +L +M+ A+ + V + A Q GY Sbjct: 345 LDTVADRLYVNASYLSRLFKQETGKTFTQHVLGRKMEQARMCLMEGCQVQETAYQLGYKD 404 Query: 212 TSYFIYAFRKHFGNSP 227 SYFI FRK++G +P Sbjct: 405 VSYFIKVFRKYWGTTP 420 >UniRef50_Q0BZ29 Transcriptional regulator, AraC family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZ29_HYPNA Length = 338 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%) Query: 138 KVRNIVNMKPAH-PWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRV 196 KVRN ++ + P + L SE L+++L +E F+Q+L AR + A+ +R Sbjct: 237 KVRNCLHSQMGRVPPSMAGTAQLLGFSERTLRRRLAEEGVNFAQLLQGARKEAAEIYVR- 295 Query: 197 EG--SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 EG ++ +IA GY+ S F+ AFR G SP +E R Sbjct: 296 EGKLTLTEIAHATGYSDQSAFVRAFRGWHGVSPGAYRREVRA 337 >UniRef50_B4X435 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X435_9GAMM Length = 377 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 2/104 (1%) Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 +L + ++R ++ A P + + + L +S S LK+ L +E T F +L + R ++ Sbjct: 272 QALLPLVSRIRQLLGQGHAEPNQ-ESVAQALNMSRSTLKRHLARENTHFQAVLTNIRKEN 330 Query: 190 A-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 A + L+ S+ IAEQ GY+ + F +AFR+ G +P R K Sbjct: 331 AVRLLLGTTHSLEHIAEQLGYSDQTNFSHAFRQWSGMTPGRFRK 374 >UniRef50_UPI000178A7F2 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A7F2 Length = 544 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 6/89 (6%) Query: 153 LKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYA 210 L+ +C L+IS K+E + T+ Q L+ RM+ AK L+R + +IAE+ G+A Sbjct: 459 LQKLCMHLHISTGYFSGVFKKELKMTYVQYLMQLRMETAKELLRSTDLKAFEIAERVGFA 518 Query: 211 STSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 +YF ++F+K G SP KEYR Q+ Sbjct: 519 DPNYFSFSFKKQVGVSP----KEYRAQAR 543 >UniRef50_UPI0001851370 two component AraC family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851370 Length = 253 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%) Query: 152 KLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGY 209 KL+DI D YIS + +K K+ T + L+D RM+ A L+ R V +IAE+ GY Sbjct: 161 KLQDIADTFYISREYISRKFKEHFHLTITDYLVDLRMKKAMELLDRTNLKVYEIAEKVGY 220 Query: 210 ASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 YF F+K G +P +YR + G Sbjct: 221 VDDKYFRKVFKKFAGVTP----NDYRQKDKNG 248 >UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SJB7_ACIJU Length = 351 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 5/93 (5%) Query: 141 NIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGS 199 N N P P I + L +SE LK+ L+ + TTF QI+ D R AK +++ + S Sbjct: 259 NSSNGYPTLPM----IAERLNMSERTLKRHLQAQGTTFLQIVADVRFTEAKKMLQHKQYS 314 Query: 200 VNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + IA GY + FI AF+K FG +P + K Sbjct: 315 IQDIASIVGYEEATNFIRAFKKTFGETPSQYRK 347 >UniRef50_B6R5N0 Probable transcriptional regulatory protein, putative n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R5N0_9RHOB Length = 307 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 7/108 (6%) Query: 134 SVSGKVRNIVN-MKPAHPWKL--KDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQH 189 S +GK RNI + M+ + + L KD S S + K+ T S+ LLD R++ Sbjct: 196 SAAGKRRNIKHLMRNGNAYNLSVKDFAKLSGRSVSSFNRDFKRLNGVTPSKWLLDTRLEK 255 Query: 190 AKNLIRVEG--SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 A+ L+ EG SV +IA Q G+ASTS+FI AF+ + +PK+ Y+ Sbjct: 256 ARELV-FEGKLSVTEIAMQIGFASTSHFIKAFKGRYDETPKQARLTYQ 302 >UniRef50_Q88GS8 Transcriptional regulator, AraC family n=11 Tax=Pseudomonas RepID=Q88GS8_PSEPK Length = 306 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Query: 147 PAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIRVEGSVNKIAE 205 P W ++++ C +S S K+ + + Q+LL RM+HA L++ +V ++ Sbjct: 212 PGQTWTMENMAACTGLSRSAFFKRFSELAGQSPGQVLLALRMRHASQLLQAGHTVEQVGA 271 Query: 206 QCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 Q GY S + F AF K G P +++ + H Sbjct: 272 QVGYQSVAAFTRAFAKAVGVQPGAYRRQHDGRGHA 306 >UniRef50_D2MM17 Response regulator receiver domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MM17_9FIRM Length = 240 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 149 HPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI---RVEGSVNKIA 204 + LKD+ L +S+ + K +K+E TF ++ D R+QHAK LI + +IA Sbjct: 148 EDYSLKDVAKLLQLSDGYITKLIKKELGKTFVDLVTDIRIQHAKYLIDNNEANYKLYEIA 207 Query: 205 EQCGYASTSYFIYAFRKHFGNSPKRVS 231 E CG+++ YF F+K G SPK+ S Sbjct: 208 EICGFSNQYYFSQVFKKVVGISPKQYS 234 >UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V3H9_9FIRM Length = 255 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%) Query: 148 AHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQ 206 A P ++++ D L +S S L K + T+FS L + R++ A +L+R + V +A Sbjct: 166 AEPITVREVADELGLSVSYLHKLFSRCGTSFSSYLTECRLRRAGHLLRESDAKVYAVAAA 225 Query: 207 CGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 CGY T YF F+KH G P EYR Sbjct: 226 CGYQDTRYFSKIFQKHMGMKP----TEYR 250 >UniRef50_C6S4V7 Transcriptional regulator, AraC family n=23 Tax=Neisseria RepID=C6S4V7_NEIML Length = 305 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 152 KLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGY 209 ++ + D L ISE L+++++ T S+ L +MQHA L++ G S+ + A CGY Sbjct: 220 QVNRLADALNISERTLQRRMRDHFGITASEWLHHKQMQHALYLLQNGGKSIGETAYLCGY 279 Query: 210 ASTSYFIYAFRKHFGNSPKRVSKEYR 235 S F AFR++FG++P KE R Sbjct: 280 RHVSSFTQAFRQYFGSTPAETKKENR 305 >UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZS6_GEOSF Length = 324 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 1/99 (1%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN-L 193 +S V IV H W LK + L +SE +++KL+ E TF ++L +AR++ A++ L Sbjct: 219 LSDSVEAIVKQDLNHKWTLKSVAQSLNMSERSMQRKLQDEGQTFRKLLNNARIRTAESYL 278 Query: 194 IRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + + S+ +I G++ S+F F+++ G +P + K Sbjct: 279 LNSQLSLTEIGYLTGFSDYSHFSKEFKRYSGTNPSQYRK 317 >UniRef50_Q9Z3Q6 Transcriptional activator rhrA n=1 Tax=Sinorhizobium meliloti RepID=RHRA_RHIME Length = 314 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 14/170 (8%) Query: 73 PVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLL---FSCLSIFAACKGFITLLT 129 P+ + L A +P LL YL +E + +++ + L + A G ++ Sbjct: 144 PIMMQPLAAECLPLQLLTNYAGYLLRQEYQSEEHAGMMVAHFYDLLPVLAQDIGNVSPRE 203 Query: 130 ---NGVLSVSGKV-RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDA 185 N + S+ +V +N+ N + + D+ + I+ ++K +E TTFS+ +L Sbjct: 204 TPHNRMASIKMRVEQNLANGS----FSITDVAEAERITPRAIQKFFSREGTTFSRYVLGR 259 Query: 186 RMQHAKNLIRVEG---SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 R+ AK+LI EG S+++IA G+ SYF FR +G P + + Sbjct: 260 RLSLAKSLILAEGEATSISQIAYNVGFNDLSYFNRTFRSRYGVRPSDLRR 309 >UniRef50_B4SR55 Transcriptional regulator, AraC family n=4 Tax=Proteobacteria RepID=B4SR55_STRM5 Length = 277 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 147 PAHPWKLKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLIRVEGSVNKIAE 205 PA W L+D+ D +S S+ ++ TT Q L R+ A+ +R + +IA+ Sbjct: 184 PAQAWTLEDLADVAGMSRSVFAASFREAMGTTPGQYLQGWRVGLAQQALRQGRPLKRIAD 243 Query: 206 QCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 GY S + AF+ H G SP++ + R Sbjct: 244 DVGYGSEAALSRAFKAHTGQSPRQWRGQARA 274 >UniRef50_C7RUT1 Transcriptional regulator, AraC family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RUT1_9PROT Length = 346 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 7/131 (5%) Query: 116 SIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-- 173 S+ A G++ L + + GK +++ +PA PW + ++ + +S S L ++ + Sbjct: 213 SLPADASGWLAGLRDRHI---GKAIGLLHARPAEPWTIDELGRQIGLSRSALHQRFVELV 269 Query: 174 EQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 Q Q L + RMQ L+R + +V IA++ GY S + F AF++ G P + Sbjct: 270 GQPPM-QYLTNWRMQRGACLLREGDATVATIAQEVGYDSEAAFARAFKRLAGTPPAAWRR 328 Query: 233 EYRCQSHTGMN 243 R H G + Sbjct: 329 AQRVSKHGGGD 339 >UniRef50_B2JSH9 Transcriptional regulator, AraC family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JSH9_BURP8 Length = 354 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 52/85 (61%), Gaps = 2/85 (2%) Query: 153 LKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR--VEGSVNKIAEQCGYA 210 + +I L++S+ L + +E TT SQ L + R+Q + L++ V V +IA QCG++ Sbjct: 263 VAEIASALHVSDRTLSRIFAREGTTPSQTLWNRRLQKSYRLLQENVALQVTQIAFQCGFS 322 Query: 211 STSYFIYAFRKHFGNSPKRVSKEYR 235 S+F +F++ FG++P ++ K+ + Sbjct: 323 DLSHFSRSFKRVFGSAPSQILKQRK 347 >UniRef50_D1X8C9 Transcriptional regulator, AraC family n=2 Tax=Streptomyces RepID=D1X8C9_9ACTO Length = 304 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 7/144 (4%) Query: 88 LLNEM-IAYLNSEERNHHNFSEL--LLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVN 144 LL E+ IAY +E+ + + L +L L A + T +L + +I+ Sbjct: 158 LLRELLIAYTRAEDDDRPERARLRAVLLDQLRASAQQPLHLPTPTTPLLRA---LCDILR 214 Query: 145 MKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGSVNKI 203 PA L ++ + S+ L + + + TF Q R+ HA L+ V + Sbjct: 215 ADPADSRTLAELGHLVGASDRTLSRLFRSDLGMTFPQWRTQLRLHHALILLTERTPVTAV 274 Query: 204 AEQCGYASTSYFIYAFRKHFGNSP 227 A QCG++STS FI FR+ FG++P Sbjct: 275 AHQCGWSSTSAFIEVFRRTFGHTP 298 >UniRef50_A1TVA8 Transcriptional regulator, AraC family n=17 Tax=Proteobacteria RepID=A1TVA8_ACIAC Length = 366 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 5/101 (4%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RV 196 +VR + P + I L++S L ++L++E + + +AR Q A++L+ R Sbjct: 248 RVRQALAHAPELSHSAQTIAAALHVSARTLHRQLREEGASLQALKDEARQQRARDLLQRT 307 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 + V +A G+AS F+ AFR+ G SP EYR Q Sbjct: 308 DRPVKAVARAAGFASEKSFMRAFRQWTGMSP----AEYRRQ 344 >UniRef50_Q1ZVK9 Transcriptional regulatory, AraC-like protein n=2 Tax=Photobacterium RepID=Q1ZVK9_PHOAS Length = 259 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 2/117 (1%) Query: 120 ACKGFI-TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 A G++ L + LS K+ N P ++ +CD +S+S L ++LK E T F Sbjct: 140 ANSGYLHQLFSMRNLSWRDKLTQYFNDDPKANHSIESVCDHFGLSKSTLIRRLKDENTQF 199 Query: 179 SQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 +L + RM +A +L++ + S ++A CGY S + F F+ FG S K+ K + Sbjct: 200 RDVLAELRMGYALSLLQTKPYSQIELAHLCGYKSEARFAQRFQHQFGLSLKQYQKTF 256 >UniRef50_A4TFK9 Transcriptional regulator, AraC family n=11 Tax=Actinomycetales RepID=A4TFK9_MYCGI Length = 346 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 +G S S KVR +++ P + + D L +S S LK++L +E TTF ++ + Sbjct: 241 SGATSFSKKVRRLLDEDPGQR-SCQRVADELSVSTSTLKRRLAEEGTTFRELRQSCLRES 299 Query: 190 AKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 A L+ S ++IA + GY + F +AF++ G SP EYR Sbjct: 300 AMMLLITRSMSASQIATELGYGDLANFSHAFKRWTGRSP----SEYR 342 >UniRef50_C6B202 Transcriptional regulator, AraC family n=3 Tax=Rhizobiales RepID=C6B202_RHILS Length = 303 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 18/164 (10%) Query: 81 ASNVPTGLLNEMIAYLNSEERNHH--------NFSELLLFSCLSIF-----AACKGFITL 127 AS+ LL+ +A L+ E ++LL L + AA G+I Sbjct: 135 ASDRAAALLSTTLATLDDELEAGQMGSTLMTRRMGDILLVQALRAYVGRKGAAETGWIGA 194 Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS-QILLDAR 186 LTN + G ++++ P H W ++ + + +S S ++ K+ + R Sbjct: 195 LTNPQI---GAAISLIHNSPGHRWTVEALATRIGMSRSAFAQRFKELVGVAPLDYVTRWR 251 Query: 187 MQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 M A+ +R E SV +A GY+S S F AF++ FG +PKR Sbjct: 252 MHRAREALRREDVSVAGLAAALGYSSESAFGNAFKRVFGRAPKR 295 >UniRef50_A0Z5Y2 Transcriptional regulator OruR n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5Y2_9GAMM Length = 337 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 2/98 (2%) Query: 139 VRNIV-NMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE 197 +R+++ + +P P ++DI + L++S L ++L +EQTTF ++ L A AKN++ Sbjct: 234 LRSVLQSQRPPLP-DIQDIAESLHLSPRTLSRRLMEEQTTFRELKLIAAHDCAKNMLLDG 292 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 SV +A GY + + F +FR SP + K++R Sbjct: 293 ASVEAVAADLGYENAANFRRSFRSVNRCSPTQWMKDFR 330 >UniRef50_B8FH05 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH05_DESAA Length = 338 Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Query: 162 ISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFR 220 IS L++ L+ + T+F++IL + R A+NLIR SV +A Q GY+ +S F AFR Sbjct: 265 ISPRSLQRHLRNQGTSFTEILDETRKHLAENLIRYPHLSVTDVAFQLGYSDSSNFSRAFR 324 Query: 221 KHFGNSP 227 + FG SP Sbjct: 325 RWFGKSP 331 >UniRef50_Q7N4L6 Similarities in the C-terminal part with transcription regulators n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N4L6_PHOLL Length = 323 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 2/100 (2%) Query: 142 IVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLIRVEGSV 200 I+N +PW +K + + ++E LK+ + TF Q L + RM A++L++ SV Sbjct: 215 IINSDYHYPWTIKSLSRAVGLNERKLKEGFRAVVFRTFHQYLENVRMTTAEDLLKKGMSV 274 Query: 201 NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 ++ GYAS S+F FR+H+ +PK +Y SHT Sbjct: 275 IDVSTAVGYASPSHFSKRFRQHYLINPKAWQAKYAV-SHT 313 >UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU19_9GAMM Length = 335 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 4/106 (3%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE 197 +VR + + + L+++ L++S LK++LK+ + +IL +AR++ A L++ Sbjct: 234 QVRRAMVKQEGGYYSLEEVAAVLHLSVRTLKRRLKEHGANYHRILKEARLERAVALLKEG 293 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMN 243 +V +A Q GY + F AFR+ G SP +YR Q + M Sbjct: 294 ETVQTVAFQLGYQDPANFTRAFRRWTGCSP----SDYRQQWLSSMG 335 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 4/111 (3%) Query: 120 ACKGFI-TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 A +G + L T+ S S K+ ++ P L+ + + +S + L +KLKQE T + Sbjct: 141 AERGLLHRLFTSSNTSFSQKLSRYLSRSPGDDHPLEFVAERFAMSRATLIRKLKQEGTQY 200 Query: 179 SQILLDARMQHAKNLIRVEGSVNK--IAEQCGYASTSYFIYAFRKHFGNSP 227 ++L + R+ HA L++ GS N +A+ CGY S F F+ FG +P Sbjct: 201 REVLAEVRLNHALYLMQ-NGSYNVALLAQLCGYQSEGRFSQRFKGKFGLTP 250 >UniRef50_C6J482 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J482_9BACL Length = 553 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 6/94 (6%) Query: 149 HPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQ 206 H + +C L+IS K+E +TTF L+ RM A++L+ + +IAE+ Sbjct: 463 HDISIAKVCQHLHISTGYFSNIFKKETKTTFVNYLMGVRMDAAQDLLATTDLKAFEIAER 522 Query: 207 CGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 G+A +YF + FRK FG SP KEYR + + Sbjct: 523 VGFADPNYFSFCFRKKFGISP----KEYRIGARS 552 >UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SDH6_HAHCH Length = 351 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 4/135 (2%) Query: 117 IFAACKGFITLLTNGVLSVSGKVRNIVN-MKPAHPWKLKDICDCLYISESLLKKKLKQEQ 175 I + C +T L G S++ +V+ I+ M L + L +SE L+++LK+E Sbjct: 218 IVSICNRELTTLV-GATSLTERVKQIITPMLQGREVGLTETAKQLGLSEWTLQRRLKKEG 276 Query: 176 TTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 F Q+L + R Q A+ ++ + ++ +IA G++S + F AF++ FG +PK K+ Sbjct: 277 VQFQQVLDETRKQIAETYLKATDLTIGEIAYLLGFSSPAAFHRAFKRWFGVNPKPF-KDQ 335 Query: 235 RCQSHTGMNTGNTMN 249 T NT N Sbjct: 336 HASGRTDENTATGEN 350 >UniRef50_A9IHK1 Transcriptional regulator, AraC family n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IHK1_BORPD Length = 343 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 150 PWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCG 208 P ++++ +S S L + K T S+ LL RM+HA LIR V ++A + G Sbjct: 254 PPSVRELARQAGVSVSKLSRIFKAVHGATLSEYLLAVRMRHAMALIRARLPVTQVAFEVG 313 Query: 209 YASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 Y F AFR+H+G SP+ V R +S Sbjct: 314 YDHAGNFSTAFRRHYGVSPRAVGATPRERS 343 >UniRef50_Q5DYJ4 Transcriptional regulator, AraC family n=1 Tax=Vibrio fischeri ES114 RepID=Q5DYJ4_VIBF1 Length = 269 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Query: 126 TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDA 185 T N SV + +V P H W L + L + S L++ LK+E +FS++LL Sbjct: 152 TFSINTKRSVKSLISELVKKSPEHSWTLITVSKELNTTPSTLRRHLKKENISFSKLLLKI 211 Query: 186 RMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMN 243 R+ N + S+ K++ G+ S++YF F+K + +P E+R S N Sbjct: 212 RLGLGLNYLTFSNHSILKVSYLSGFNSSAYFCDVFKKEYHMTP----SEFRINSRNNNN 266 >UniRef50_A0M6C0 Protein containing AraC type HTH domain n=18 Tax=Bacteroidetes RepID=A0M6C0_GRAFK Length = 296 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 58/95 (61%), Gaps = 4/95 (4%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ--EQTTFSQILLDARMQHAKNLIR 195 + ++IV + A P L+++ + + +S LK+ KQ + +S L D +M++A+ L+ Sbjct: 197 RAKDIVISRMAEPPSLQELSEEIGLSLKKLKEGFKQIYGDSVYS-FLFDYKMEYARKLLE 255 Query: 196 V-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 + +VN++ + GY++ S+FI F+K FG +PK+ Sbjct: 256 SGDYNVNEVGLKVGYSTASHFIAGFKKKFGTTPKK 290 >UniRef50_Q84HG1 QbsA n=1 Tax=Pseudomonas fluorescens RepID=Q84HG1_PSEFL Length = 267 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 1/95 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRV 196 + R I+ + A P +C C+ +SES LK ++ T + LL+ARM A L+ Sbjct: 169 QARQIIFTQMAQPLTNHYLCSCVGLSESRLKDGFRRYFGVTPRRCLLEARMHKAWQLLEA 228 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 V + A GY+ S F AF + FG +PK VS Sbjct: 229 GRQVAEAAYSVGYSHPSNFSTAFSQFFGRTPKSVS 263 >UniRef50_Q48HQ8 Transcriptional regulator, AraC family n=3 Tax=Pseudomonas syringae group RepID=Q48HQ8_PSE14 Length = 315 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRV 196 + R ++ P W ++ + + ++ LK+ +Q + L R++ A L+R Sbjct: 201 RARKLLEAHPEQDWTIESLAQSVELNTKKLKQGFRQSYDSGVYGYLQKVRIERAAQLLRQ 260 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 +G+V+++A GY+S S+F FR+++G +P Sbjct: 261 QGAVSEVAAAVGYSSASHFAKVFRRYYGINP 291 >UniRef50_D0S2A2 Transcriptional regulator n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S2A2_ACICA Length = 339 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 1/96 (1%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 S S KVRNI+ +P+ ++ ++ L ++ L++ L E T+ Q++ D R A++L Sbjct: 238 SYSQKVRNILLQQPSQMPRIDEMAAHLQVNLRTLQRHLAIEGVTYEQLIDDIRKDLAEDL 297 Query: 194 IRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 ++ +V ++A Q GY+ S F AF++ G SP+ Sbjct: 298 LKTTNLTVEEVAIQLGYSEVSAFSRAFKRWKGISPR 333 >UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecalis RepID=C2H3H7_ENTFA Length = 493 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query: 153 LKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYA 210 LK + D L+++ S L + K+E + +FSQ L R +HA+ L+ + ++N+I+E+ G+ Sbjct: 401 LKTVADELHLNPSYLGQIFKKETKRSFSQYLNQVRTKHAQKLLLYTDDTINEISEKVGFN 460 Query: 211 STSYFIYAFRKHFGNSPKRVSKEYRC 236 +T+YF F+K G +PK ++Y+ Sbjct: 461 NTNYFSKMFKKLNGITPKEFREQYQS 486 >UniRef50_C0EYR4 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EYR4_9FIRM Length = 535 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Query: 153 LKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYA 210 ++ IC L++S S K KQE +TTF L+ RM+ AK L+++ + + I GY Sbjct: 448 VESICKELHVSSSYFSKIFKQETETTFLNYLISRRMEEAKMLLKMTDYKSHVIGTMVGYP 507 Query: 211 STSYFIYAFRKHFGNSPKRVSK 232 +YF Y F+KH G SP + K Sbjct: 508 EPNYFSYVFKKHCGISPVKYRK 529 >UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZQH8_9SPHI Length = 355 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Query: 127 LLTNGVLSVSGKVRNIVNMKPA-HPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDA 185 LLT KVR ++ +P H L + L+++ L++KLK E TF I D Sbjct: 243 LLTKKPQEWVKKVRQVILNQPINHLPSLHQVAHALHLTPRSLQRKLKHEGHTFLVIANDI 302 Query: 186 RMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 + Q A +L+R + +V+++A GYA S F AF++ G +PK + + Sbjct: 303 QQQRAMHLLRQTQLNVSEVAYMLGYAEPSVFRRAFKRWTGKTPKEYQQSF 352 >UniRef50_C4ZBY2 Two-component response regulator n=4 Tax=Clostridiales RepID=C4ZBY2_EUBR3 Length = 534 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 153 LKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARM-QHAKNLIRVEGSVNKIAEQCGYA 210 L D C L +S S K+E ++F + L D RM + A+ L+ + IA+ GYA Sbjct: 446 LDDTCKELGVSNSYFSSLFKKETGSSFVEYLTDYRMDKAARMLVETDDKSYVIAQNVGYA 505 Query: 211 STSYFIYAFRKHFGNSPKRVSKEY 234 +YF Y F++ +G SP R EY Sbjct: 506 DPNYFSYVFKRKYGVSPSRYRTEY 529 >UniRef50_C6W9P9 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W9P9_ACTMD Length = 309 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 9/106 (8%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLL----KKKLKQEQTTFSQILLDARMQHAKN 192 G V V+ +P H W L+++ +S S + K+ + + L++ RMQ A+ Sbjct: 207 GAVLRAVHAEPGHRWTLEELAAIARMSRSSFAVNFRTKVGKPPLDY---LIEWRMQLARA 263 Query: 193 LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK--RVSKEYRC 236 +R + S+ IA GY S S F AFR+ G SP+ RVS R Sbjct: 264 ALRTDDSLTSIAGAIGYRSESAFSTAFRRVVGVSPREFRVSLRPRA 309 >UniRef50_C2FUL2 Sensor protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FUL2_9SPHI Length = 653 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 153 LKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYA 210 ++DI L +S L +K+K Q + ++ LL R++ AK+LI +EG ++N+IAE+ G++ Sbjct: 569 VEDISTELNMSRVQLYRKVKTLLQCSINEYLLQRRLKKAKHLI-LEGFNINEIAEKVGFS 627 Query: 211 STSYFIYAFRKHFGNSPKRVSKE 233 S++YF F+K FG +P +E Sbjct: 628 SSAYFTSTFKKRFGMTPTNFKRE 650 >UniRef50_Q169B6 Transcriptional regulator, AraC family, putative n=2 Tax=Roseobacter RepID=Q169B6_ROSDO Length = 337 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 6/104 (5%) Query: 134 SVSGKVRNIVNMKPAHPW-KLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQ-HAK 191 S + KV ++ AH K+ DI L +S+ L ++L + +T++S IL R++ A+ Sbjct: 234 STAEKVEVLIEAGLAHEVPKISDIAHALGLSQRTLARRLNEAETSYSGILNHVRLRVAAR 293 Query: 192 NLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 L + + +I+ + GY ST+ F AF++ G SP +EYR Sbjct: 294 ELRESKNQIGEISWRLGYGSTASFSTAFKRETGLSP----REYR 333 >UniRef50_P77634 Uncharacterized HTH-type transcriptional regulator ybcM n=37 Tax=Enterobacteriaceae RepID=YBCM_ECOLI Length = 265 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 1/110 (0%) Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDAR 186 LL+ S+ + N++ +P W + LYIS S L ++L E +F IL D R Sbjct: 155 LLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 Query: 187 MQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 + +A + I+ +++IA + GY S F F F +P+ + K R Sbjct: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 >UniRef50_A1HMP5 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HMP5_9FIRM Length = 251 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 7/101 (6%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-- 194 KV I+ + A L +I ++++ S L ++ K E +FSQ L++ R++ AK+L+ Sbjct: 133 KVLTILENRYAERLSLTNIAATVHVNPSYLSRRFKAEVGYSFSQYLINLRLKIAKDLLIS 192 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 R + S+ +IAEQ G+AS Y F ++ G +P +EYR Sbjct: 193 RPDLSIAQIAEQTGFASQQYLSALFHRNTGLTP----REYR 229 >UniRef50_C6J1B0 Transcriptional regulator n=2 Tax=Firmicutes RepID=C6J1B0_9BACL Length = 272 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 17/117 (14%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLD----ARMQHAKN- 192 K+R ++ PAHPW + ++ + L IS L+ K+ TF +D R++ AK Sbjct: 155 KLRAAIHNNPAHPWTVSEMAEILSISPGYLQVIYKK---TFGLSCMDDVIQCRIRLAKEY 211 Query: 193 LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMN 249 LI +V +IA +CGY + +F F++ G SP++ K +NTG +N Sbjct: 212 LIHSHYTVAEIAYRCGYRNVEHFCRQFKQMTGTSPRKYPK---------LNTGPDIN 259 >UniRef50_C2BXH0 Response regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2BXH0_LISGR Length = 495 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 153 LKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKN-LIRVEGSVNKIAEQCGYA 210 LKD+ + L+++ + + K+E +FSQ L R++ A+N L+ ++N+IA++ GY Sbjct: 404 LKDVANRLHMNTMYVGQLFKKETNKSFSQYLHQYRIKKAQNFLVDTSDTINEIADKTGYT 463 Query: 211 STSYFIYAFRKHFGNSPKRVSKEYRC 236 S YF +F+K G SPK ++Y+ Sbjct: 464 SAGYFYKSFKKICGISPKEFREQYQS 489 >UniRef50_Q7MF52 AraC-type DNA-binding domain-containing protein n=6 Tax=Vibrio RepID=Q7MF52_VIBVY Length = 308 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%) Query: 131 GVLSVSG--KVRNI---VNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLD 184 G+LS+ K+R++ V+ +P H W L+ + +S S L +Q +T + L Sbjct: 199 GLLSLYAHPKLRHVISAVHQQPQHDWTLESLAKHCAMSRSALANTFRQISGSTVIEYLTW 258 Query: 185 ARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 RMQ A + I+ S+ +AE GY S + F AF+K F SP + KE Sbjct: 259 WRMQLAWSQIKAGDSIALVAESVGYRSEAAFSRAFKKAFLISPGKARKE 307 >UniRef50_Q0VQ50 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VQ50_ALCBS Length = 354 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 7/91 (7%) Query: 152 KLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN-LIRVEGSVNKIAEQCGYA 210 +L+ I D L I L+++L+ E T FS +L D R + A + L+ E SVN+IA GY+ Sbjct: 264 QLEPIADQLGIKPWTLRRQLRAENTDFSSLLEDERRRLACDWLLHSERSVNQIALDLGYS 323 Query: 211 STSYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 S F AF++ F +P +YR SH G Sbjct: 324 EQSAFNRAFKRWFSITP----VQYR--SHQG 348 >UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1S0_ERYRH Length = 497 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-R 195 KV IV A + I D L+++ L + K+E +FSQ L R++ A+NL+ + Sbjct: 391 KVLQIVLKDYAQDITISSIADTLHMNAMYLGQLFKKETNKSFSQYLNHFRIKEAQNLLLK 450 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 ++N+IAE GY S+ YF F+K G SPK + Y Q Sbjct: 451 SNHNINEIAELVGYTSSGYFYKNFKKECGISPKEYRERYLKQ 492 >UniRef50_C7PH54 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PH54_CHIPD Length = 333 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 4/85 (4%) Query: 149 HPWKLKDICDCLYISESLLKKKLKQ--EQTTFSQILLDARMQHAKNLI-RVEGSVNKIAE 205 HP L ++ ++E LK +Q + + F L D RM++A+N+I R + S+ +IA+ Sbjct: 248 HPPSLPELSRMAGLNEFKLKNGFRQLFDNSVFG-YLNDHRMEYARNMISRQQSSMTEIAD 306 Query: 206 QCGYASTSYFIYAFRKHFGNSPKRV 230 + G++S +F AF+K FG SP ++ Sbjct: 307 ELGFSSVQHFSVAFKKKFGVSPSKI 331 >UniRef50_A5U9G2 AraC-family transcriptional regulator n=12 Tax=Mycobacterium tuberculosis complex RepID=A5U9G2_MYCTA Length = 263 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 150 PWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCG 208 P L+ I + +S+ L + E TF Q R+QHA L+ V +A +CG Sbjct: 163 PLTLQQIGGRIGVSQRTLSRLFSDELGMTFPQWRTQLRLQHALVLLAERHDVTSVASECG 222 Query: 209 YASTSYFIYAFRKHFGNSPKRVSK 232 +A+ S FI +R+ FG++P + +K Sbjct: 223 WATPSAFIDTYRQAFGHTPGQAAK 246 >UniRef50_Q0VPB7 Transcriptional regulator, AraC family n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VPB7_ALCBS Length = 355 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA-KNLIRVE 197 V+ + + H ++ + D L ++ L+++L++E T F+Q+ R QHA K L + Sbjct: 242 VKQLERLLSEHAVSMEAVADALAVTPRTLQRRLQEEGTRFAQLRDQVRHQHACKALRQPR 301 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNAL 251 ++ +A + G++ T+ F +AF++ G +P + K Y S T ++L Sbjct: 302 CNMQSLAIELGFSDTANFYHAFKRWQGCAPGQYRKRYSNDSGKEAQKAQTDDSL 355 >UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A3JHC0_9ALTE Length = 342 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 5/97 (5%) Query: 134 SVSGKVRN-IVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH--A 190 ++S +V N ++N +P L D+ L +S L +KLK E T++ Q LLD Q A Sbjct: 239 ALSQQVSNCLLNSPDGYP-SLDDVASRLAMSRRTLIRKLKTEGTSY-QDLLDGVRQELAA 296 Query: 191 KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 L+ +V +IAE+ GY TS F FR+ FG +P Sbjct: 297 WYLLETTVAVEQIAERLGYQDTSNFSRTFRRWFGMTP 333 >UniRef50_C7XTU9 Transcriptional regulator n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XTU9_9LACO Length = 327 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 7/108 (6%) Query: 134 SVSGKVRN-IVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN 192 S S +VRN +V + P + ++D+ L IS+ L++KLK+E T F Q L R AKN Sbjct: 224 SYSKRVRNTLVELLPRGEFTIEDVASSLGISKRTLQRKLKEETTNFQQQLNATREMLAKN 283 Query: 193 -LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 L+ + ++IA Y T+ F+ AF G S ++YR QSH Sbjct: 284 YLLNTSMTTDEIAFLLAYQETNSFLRAFNVWTGMS----VQQYR-QSH 326 >UniRef50_C0AA65 AraC-type DNA-binding domain-containing protein-like protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AA65_9BACT Length = 288 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Query: 177 TFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 TFSQ LL+ R++ A L+ +G +V ++A CG+ S +YF+ FR+H+G++P Sbjct: 234 TFSQYLLEFRLKKAAVLLEGKGRTVAEVAAACGFGSDAYFVRCFRRHYGHTP 285 >UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUG5_9GAMM Length = 187 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 2/106 (1%) Query: 132 VLSVS-GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA 190 V S+S G V IV P P + I L++S L++KLK E T+F +L D R+Q A Sbjct: 80 VQSISRGVVDKIVEHLPDGPPNQQQIAQALHVSNRTLQRKLKDEGTSFMDLLQDTRLQLA 139 Query: 191 KN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 + L SV + A G++ S F AF++ G +P +R Sbjct: 140 RKYLSHPNRSVVETAYMLGFSEPSTFSRAFKRWTGVAPADFRDSHR 185 >UniRef50_A7B5D7 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5D7_RUMGN Length = 289 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 12/140 (8%) Query: 104 HNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPA----------HPWKL 153 H FS +S + + C+ F++L G LS V + + + A P + Sbjct: 147 HPFSRFPYYSQIIVSYLCQLFLSLAEQGTLSSVSSVPDAITFRNAINFLNTNLDCQP-TV 205 Query: 154 KDICDCLYISESLLKKKL-KQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYAST 212 +I + IS++ LK+ K + + LL ++ AK L++ G V+ +AE G+AS Sbjct: 206 SEIAEYCNISDASLKRIFDKYAGISVHKYLLKLKINVAKKLLQDGGQVSVVAENLGFASQ 265 Query: 213 SYFIYAFRKHFGNSPKRVSK 232 SYF AF++ G +P +K Sbjct: 266 SYFSKAFKRETGFTPSDFAK 285 >UniRef50_Q65NG7 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65NG7_BACLD Length = 400 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 2/77 (2%) Query: 153 LKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYA 210 LK + D L +S L + +K+E TF Q+L + RM A +L+ S++ IAEQ GY Sbjct: 308 LKQMADALQVSSVYLSRMMKKELGVTFVQLLTEMRMDQAVHLLETTPLSIHDIAEQTGYD 367 Query: 211 STSYFIYAFRKHFGNSP 227 + YF F+K G SP Sbjct: 368 TQHYFSTVFKKTMGVSP 384 >UniRef50_C9L8Z4 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C9L8Z4_RUMHA Length = 266 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 10/115 (8%) Query: 128 LTNGVLSVSGKVRNIVNMKPAHP---WKLKDICDCLYISESLLKKKLKQEQTTFS--QIL 182 L +G + ++R++V+ HP + +C+ + E+ +K K EQT S + L Sbjct: 153 LNSGTERMDERIRSVVDFMVLHPTETYTTARLCEMAGLGETRFRKLFK-EQTGKSPGEYL 211 Query: 183 LDARMQHA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSP---KRVSKE 233 D RM A + L+ SV+ IA GY ++FI F+K+FG +P ++VSKE Sbjct: 212 RDMRMTVAGRRLLLSAESVSDIAYSVGYEDVNFFIRVFKKYFGVTPNQYRKVSKE 266 >UniRef50_Q397S2 Transcriptional regulator, AraC family n=4 Tax=Burkholderia RepID=Q397S2_BURS3 Length = 322 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 6/104 (5%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIR 195 G ++ PAHPW L ++ +S S ++ K+ E T + RM A NL+R Sbjct: 203 GAAIRAIHADPAHPWTLAELAKIAGMSRSGFAQRFKELEGGTAIGYVTRWRMMTAANLLR 262 Query: 196 -VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 E SV+ IA GY S S F AF++ SP +YR QS Sbjct: 263 DGEQSVSSIAFSLGYESESAFSTAFKRTMSCSP----LQYRRQS 302 >UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX05_9GAMM Length = 335 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 156 ICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAK-NLIRVEGSVNKIAEQCGYASTSY 214 I L +S L+++LK+E TTF QI D+R + AK L R + S+N++A Q G+ S Sbjct: 253 ISSALSMSAPTLRRRLKREGTTFQQIKDDSRCEAAKLCLNRHDLSINEVAMQMGFTDPSA 312 Query: 215 FIYAFRKHFGNSPKRVSKEYR 235 F +F+K G +P + + R Sbjct: 313 FHRSFKKWTGQTPGQFRSQLR 333 >UniRef50_B9DJR6 Putative uncharacterized protein n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DJR6_STACT Length = 247 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQH-AKNLI 194 K+ +N P KL I LY +ES + +K KQE Q TF++ L + R+ + A+NLI Sbjct: 116 NKILEYINENYKEPLKLCVIAQELYFNESFISRKFKQEMQMTFTEYLTNIRLYNLAENLI 175 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 + G N+I E+ G+ S F+ F++ + +P+ Sbjct: 176 -LRGEDNEIWEEFGFPSQRTFLKRFKETYHMTPR 208 >UniRef50_C6VTG9 Transcriptional regulator, AraC family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTG9_DYAFD Length = 338 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 4/97 (4%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ--EQTTFSQILLDARMQHAKN-LIR 195 V+NI++ W LK++ + +E LKK K+ +T F L RM+ AK+ L + Sbjct: 238 VKNILDENLGQQWSLKELARRVGTNEFNLKKYFKEVFGETVFG-YLHQKRMETAKDELCQ 296 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 SVN IA++ GY ++F AF+K+ G P R+SK Sbjct: 297 PGSSVNDIAQRMGYKHPTHFTAAFKKYHGILPSRLSK 333 >UniRef50_B0NBQ5 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NBQ5_EUBSP Length = 563 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 9/127 (7%) Query: 120 ACKGFITLLTNGVLSVSGKV-----RNIVNMKPAHP-WKLKDICDCLYISESLLKKKLKQ 173 AC+ TL+ ++ SGK+ R V+ A + ++ +C+ L+IS + K+ Sbjct: 438 ACRQIGTLIQKERMA-SGKMLVEKARQYVDENYADAEFSVETLCESLHISPAYFSTIFKK 496 Query: 174 EQ-TTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 E F L D RM+ A L+ + IA + GY+ +YF YAF+K G SP R Sbjct: 497 EAGINFISYLTDVRMKEAMRLLDETDEKTYMIAAKVGYSEPNYFSYAFKKQVGVSPSRYR 556 Query: 232 KEYRCQS 238 K R Q Sbjct: 557 KGLRDQQ 563 >UniRef50_A6FZ93 Transcriptional regulator, AraC family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FZ93_9DELT Length = 301 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 150 PWKLKDICDCLYISESLLKKKLKQEQTTFS--QILLDARMQHAKNLIRVEGSVNKIAEQC 207 P + ++ +S ++ ++ + T+FS Q + R+ HA LI +V++ A+ Sbjct: 204 PLSVDELAQRAGMSRAVFHRRFRAA-TSFSPLQFIKALRLSHAAMLIVGGQAVSQAADAV 262 Query: 208 GYASTSYFIYAFRKHFGNSPKRVSK 232 GY S S F FRKHFG+SP+R +K Sbjct: 263 GYTSASQFSREFRKHFGDSPRRWAK 287 >UniRef50_A5VDX1 Transcriptional regulator, AraC family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VDX1_SPHWW Length = 331 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA-KNLIRVE 197 VR +VN L D+ L++S L+++L +F +I+ + R A + ++ E Sbjct: 227 VRRLVNTATDDAPSLSDVAARLHLSARTLRRRLADRGVSFMRIVDEERRSLALQYVMGGE 286 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 +V IAE+ GY+ ++ F +AFR+ G+SP+ Sbjct: 287 MTVESIAERLGYSESANFRHAFRRWTGSSPR 317 >UniRef50_B4WZV2 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WZV2_9GAMM Length = 318 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 4/84 (4%) Query: 150 PWKLKDICDCLYISESLLKK--KLKQEQTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQ 206 P + + D + ++ES + + KLK +QT F++ + + RM A+ L+ E V +A++ Sbjct: 229 PLSIPTLADHVGLTESRVDQLFKLKNDQT-FAEFIRNERMTLAQQLLETGEHPVKVVADK 287 Query: 207 CGYASTSYFIYAFRKHFGNSPKRV 230 GYA S F A+R HFG +P R Sbjct: 288 TGYAHVSNFSRAYRAHFGETPART 311 >UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3Z2_9GAMM Length = 343 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 22/106 (20%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICD-----------CLYISESLLKKKLKQEQTTFSQIL 182 ++GKVR W+L D D L++S L+++LK E T++ +++ Sbjct: 231 DIAGKVR----------WQLLDALDKELPSEEAIAQALHMSPRTLQRRLKAENTSYGEVV 280 Query: 183 LDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 RMQ A+ L+ S ++ CG++ S F AF++ G +P Sbjct: 281 QQTRMQLAQQLLASPDISATEVGLACGFSDASAFTRAFKRWTGTTP 326 >UniRef50_A9U7E9 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U7E9_PHYPA Length = 399 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 4/78 (5%) Query: 153 LKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIRVEGS--VNKIAEQCGY 209 L+D+ D +YIS++ L +Q TF L RM+ AK+++ +E + +IAE+ GY Sbjct: 317 LQDVADQVYISKNYLSTLFRQFTGETFGDYLTRVRMEKAKSMV-LEKKLLIAEIAERVGY 375 Query: 210 ASTSYFIYAFRKHFGNSP 227 + YF F+KH G SP Sbjct: 376 RNVPYFTTLFKKHTGRSP 393 >UniRef50_UPI0001C374E0 transcriptional regulator, AraC family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C374E0 Length = 267 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 6/99 (6%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKK-KLKQEQTTFSQILLDARMQHAKNLIRV- 196 +R+ + +P W ++I + + IS + L T Q ++++R+ +A L+R Sbjct: 161 IRDAIYDEPMTHWSAEEISEDMGISRPYFHRLYLSAFGVTCRQDIIESRLIYASELLRTT 220 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 + S++ +AE CGY S +YF+ F++H G +P EYR Sbjct: 221 DMSISAVAETCGYDSDAYFMRQFKQHKGCTP----SEYR 255 >UniRef50_B6BG36 Transcriptional Regulator, AraC family, putative n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6BG36_9RHOB Length = 349 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 156 ICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGS-VNKIAEQCGYASTSY 214 I L +S L+++L+ E FS++L RM+ AK ++ G+ ++ I+E+ GY+ S Sbjct: 255 IAAALGMSRRTLRRRLEDEGQKFSRLLAGCRMEIAKRMLLAPGAQLHDISERLGYSEVSA 314 Query: 215 FIYAFRKHFGNSPKRVSKE 233 F AFR+ G +P + K+ Sbjct: 315 FERAFRQREGATPSQFRKQ 333 >UniRef50_B8IW11 Transcriptional regulator, AraC family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IW11_METNO Length = 342 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 9/121 (7%) Query: 121 CKGFITL-----LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ 175 C+ +TL T+ + G +R + A L+ L IS L++KL +E Sbjct: 224 CRNIMTLGLEVQRTSAAIRTEGYIRQNI---AAGNLSLEHASRSLSISSRTLQRKLVEEN 280 Query: 176 TTFSQILLDARMQHAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 TF ++ + R ++N L+ E V+ IA GY+ TS F+ AF + +G SP + K + Sbjct: 281 ITFGLLVENFRKSESRNKLLSSEMGVSDIAYDLGYSETSAFVRAFTRWYGISPSKFRKMH 340 Query: 235 R 235 R Sbjct: 341 R 341 >UniRef50_A6GXX7 Probable transcriptional regulator, AraC family n=1 Tax=Flavobacterium psychrophilum JIP02/86 RepID=A6GXX7_FLAPJ Length = 327 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 2/98 (2%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-R 195 +VR+I+ HP+ LK++ + +E LKK K TT L + +M+ A+NL+ Sbjct: 222 QVRDIILDNLKHPFSLKELAHLVGTNEFTLKKGFKTIFGTTVFGFLNNIKMEKAQNLLTE 281 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 E ++ +IAE GY + ++F AF+K +G P + K+ Sbjct: 282 QELTITQIAELVGYKNAAHFTTAFKKKYGTLPSTLKKQ 319 >UniRef50_P45043 Xylose operon regulatory protein n=26 Tax=Gammaproteobacteria RepID=XYLR_HAEIN Length = 387 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Query: 143 VNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT-TFSQILLDARMQHAKNLIR-VEGSV 200 + + H K+ + D L S S L+++ K E T Q++ + ++ AKNL++ + S+ Sbjct: 294 IRHRACHRIKVGQVLDHLETSRSNLEQRFKNEMNKTIHQVIHEEKISRAKNLLQQTDISI 353 Query: 201 NKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 +I E CGY S YF F+K F +PK Sbjct: 354 KEITEICGYPSIQYFYSVFKKEFEMTPKE 382 >UniRef50_UPI0001C365B5 response regulator receiver protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C365B5 Length = 347 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 6/87 (6%) Query: 153 LKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYA 210 L ++ + ++ S L +K+E F I+++AR++HAK L++ +N++A+ G+ Sbjct: 263 LSEVAKVVSVNPSYLSSLIKKETGKNFIDIIIEARLEHAKKLLQNPSHRINEVADLSGFK 322 Query: 211 STSYFIYAFRKHFGNSPKRVSKEYRCQ 237 +YF F+KH G SP KEYR Q Sbjct: 323 DYAYFYQTFKKHVGLSP----KEYRNQ 345 >UniRef50_Q1ZU86 Putative CFA/I fimbrial subunit D n=1 Tax=Photobacterium angustum S14 RepID=Q1ZU86_PHOAS Length = 239 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 5/95 (5%) Query: 142 IVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSV 200 +V+ W IC+ LY+S + L ++L ++ T+ ++ + R+ A L+R + V Sbjct: 145 LVSNDLKRKWSYDLICELLYLSPATLYRELSKKNTSLKELTNNLRLTEAATLLRGTKLPV 204 Query: 201 NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 KIA + G+ S+SYF F++ F +P EYR Sbjct: 205 GKIANEVGFGSSSYFGKVFKQTFNCTP----VEYR 235 >UniRef50_Q2BIB0 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BIB0_9GAMM Length = 319 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 4/98 (4%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS--QILLDARMQHAKNLI- 194 KV++++ P WK+ + + +++SE L ++L E T FS Q L AR++ A+ L+ Sbjct: 220 KVQDLIMQAPGQDWKIAQLAEEVFLSERHL-RRLFTEATGFSVQQYLQQARVELARQLLE 278 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + S++ IAE+CG+A+ A+ + +P R K Sbjct: 279 QTSFSLDAIAERCGFAAERSLRRAWEQWREGTPSRYRK 316 >UniRef50_UPI0001C36B1C two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36B1C Length = 505 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 19/145 (13%) Query: 115 LSIFAACK--------GFITLLTNGVLSVSGKVR--NIVNMKPAH-------PWKLKDIC 157 L I+A CK F+T G++ + +VR NI+ + P K++ + Sbjct: 359 LVIYAICKCRTLREIVNFLTEHITGIIRMVHEVRSDNIIEKLCGYIGKNYRQPLKIETLA 418 Query: 158 DCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFI 216 + + S L K KQE +F L R++ AK L+ + + +A +CG+ S YF Sbjct: 419 EVFGYNGSYLGKLFKQETGESFHSYLDRVRIEKAKKLLETDARIYSVASECGFQSNEYFS 478 Query: 217 YAFRKHFGNSPKRVSKEYRCQSHTG 241 F+K+ G SP+ K R + G Sbjct: 479 NKFKKYVGVSPQAYRKA-RAEEQGG 502 >UniRef50_A6P0J9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0J9_9BACE Length = 425 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 2/112 (1%) Query: 132 VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHA 190 V S + + + +N L+D+ L+++ES L K +QE T+F+ L R++H+ Sbjct: 313 VSSATTRAVSYINAHYMDKLTLRDLASALFLNESSLSKLFRQELGTSFTDYLNRIRIEHS 372 Query: 191 KNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 L+R + S+ +I+ G+ SYF F+K G +P++ + + HT Sbjct: 373 TELMRNTDRSLLEISGLVGFDDQSYFTKIFKKVTGTTPRQYKSQLNNEKHTS 424 >UniRef50_Q1GKL0 Transcriptional regulator, AraC family n=2 Tax=Ruegeria RepID=Q1GKL0_SILST Length = 237 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 141 NIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGS 199 +++ PA W++++ L +S L++ L E FS L R A +++R + S Sbjct: 135 HLIASDPARAWRIEETAAWLGLSTRSLQRYLLAEGGRFSATLRHMRTSLASDMLRNSDQS 194 Query: 200 VNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 + +I CGYA ++F FRK G +P+R + R Sbjct: 195 LGEIGFCCGYADQAHFQREFRKVSGQTPRRFRSQPR 230 >UniRef50_D0LYU6 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYU6_HALO1 Length = 362 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 138 KVRNIVNMK-PAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRV 196 +VR+IV P P L+ + + L +S L+++L+ E T+ ++L R + A + + Sbjct: 265 QVRDIVGTALPEGPLALEAVAERLRMSARTLQRRLRAENTSLHRVLEQLRRERALSFLGT 324 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 ++ +IA GY+ S F AF++ G +P+ Sbjct: 325 PMAIGEIAYLLGYSEPSAFHRAFKRWTGTTPE 356 >UniRef50_A6F6Z7 Probable transcriptional regulator n=1 Tax=Moritella sp. PE36 RepID=A6F6Z7_9GAMM Length = 354 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 5/119 (4%) Query: 111 LFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDC-LYISESLLKK 169 L L + AA G ++ L G S S +V +I+ + + KD+ L +SE L++ Sbjct: 222 LLQTLELHAA--GQVSAL-EGTHSFSVQVHDIIRILLSKGITRKDMVAAQLNMSERTLQR 278 Query: 170 KLKQEQTTFSQILLDARMQHAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 KL+QEQT++ ++L +AR+ A+ L + + +++IA G++ T F +F+ G +P Sbjct: 279 KLQQEQTSYQKLLDEARLSLAQQYLTKSKAGIDEIAIMLGFSETRSFFRSFKLWTGQTP 337 >UniRef50_C9Y4B2 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9Y4B2_CROTZ Length = 312 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 5/117 (4%) Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 A G + LL + L+ + V P HPW L+ + ++S S + Sbjct: 196 AAPGMLPLLADKRLA---PAVSAVLANPEHPWTLESMAARCFLSRSTFARHFASRYPLTP 252 Query: 180 QILLD-ARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 Q L+ RM A L+ R + ++ ++AE CGY + + F AF+ +G +P + +++ Sbjct: 253 QGWLNQVRMARAARLLEREQRAIGRVAEACGYLTQAAFSKAFKSAWGVTPGQFRQQH 309 >UniRef50_C7R5F1 Transcriptional regulator, AraC family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R5F1_JONDD Length = 267 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 147 PAHPWKLKDICDCLYISESLLKKK-LKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAE 205 PAHP L++ Y S L++ ++Q TF + R++ A +L+ +V+ +A Sbjct: 176 PAHPRSLEEWAKVCYTSAKTLQRLFVQQTGVTFPEWRTRVRVRTALDLLHEGWTVHSVAT 235 Query: 206 QCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + GY++ S FI AF + G++P R +E Sbjct: 236 RVGYSTASGFIAAFSRITGHTPARYMRE 263 >UniRef50_C5EPK7 Two-component response regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EPK7_9FIRM Length = 289 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 12/118 (10%) Query: 116 SIFAACKGFITLLTNGVLSVSGKV-RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE 174 +I + +G+ ++++ + V + RNI L D+CD L +S S K K+E Sbjct: 164 AIRSGRQGYSSMVSQAISYVDRNINRNI---------SLSDVCDELLVSMSHFSKCFKKE 214 Query: 175 QTT-FSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 FS + +M++A+ L+R + VN++A GY+ +YF F+K FG +P + Sbjct: 215 TGAGFSSYVTMMKMENARILLRNPKNRVNEVARMLGYSDYAYFFQVFKKQFGYAPSDI 272 >UniRef50_C4Z3B2 Two-component system, response regulator YesN n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z3B2_EUBE2 Length = 514 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLIR-V 196 V+N ++ + + D +Y++ S L K+E S+ + RM+ AK L+ Sbjct: 414 VKNYIHNHYGEEIGAQQLADMVYLAPSYLSSLFKKETGQNLSKYIKQYRMEKAKELLTGT 473 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 + I+EQ GY + SYF+ +FR++FG SP++ Sbjct: 474 NMKIVNISEQVGYPNVSYFVQSFREYFGISPQK 506 >UniRef50_Q39HU5 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. 383 RepID=Q39HU5_BURS3 Length = 345 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%) Query: 149 HPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG--SVNKIAEQ 206 P +LKDI L SE LK++L++E F I R A+ LI EG S+ +IA++ Sbjct: 256 RPPQLKDIATLLNTSERTLKRRLQEEGACFRDISSAVRKTRAQALI-AEGRLSIKEIAQE 314 Query: 207 CGYASTSYFIYAFRKHFGNSPKRVSKE 233 G++ S F A+++ G +P VS++ Sbjct: 315 LGFSDMSSFSQAYKRWTGVAPS-VSRQ 340 >UniRef50_UPI0001C3708E response regulator n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3708E Length = 581 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%) Query: 143 VNMKPAHPWKLKDICDCLYISESLLKKKLKQ--EQTTFSQILLDARMQHAKNLIR-VEGS 199 + P W ++ +C +IS S L++ K ++ F + L+D RMQ AK L+R E S Sbjct: 485 MQQHPEKDWSIQVLCQHTHISRSYLQRMYKTYFGKSIFEE-LIDFRMQKAKALLRDTELS 543 Query: 200 VNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 ++++A CGY S S+F F+ +P R Sbjct: 544 ISEVAAACGYGSYSHFANQFKAQEDITPSR 573 >UniRef50_A6GMI7 Putative transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GMI7_9BURK Length = 340 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI 194 VS +RN + + L I +++E L+++L E T++ +L + R A+ L+ Sbjct: 233 VSAWLRNKLLADLSSSPSLAQIATDHFMTERTLRRRLTDEGTSYRDLLAEVRQTMAEELL 292 Query: 195 RVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 G SV++++ + GY+S S FI+AF+K SP++ Sbjct: 293 SSTGLSVSEVSARLGYSSPSAFIHAFQKWHNCSPRQ 328 >UniRef50_Q5E051 Transcriptional regulator, AraC family n=1 Tax=Vibrio fischeri ES114 RepID=Q5E051_VIBF1 Length = 255 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 133 LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN 192 +S + KV I++ +++ IC L IS++ L ++LK+ T F +I+ RM A Sbjct: 150 ISFNEKVYEILDKMDPKEHRIESICLVLNISKATLIRRLKKSGTQFKKIVRQVRMNKALF 209 Query: 193 LIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 LI+ +++I+ CGY S F F FG SPK K + Sbjct: 210 LIQKRTIPLDEISFSCGYQSMELFNLYFESEFGISPKNYIKTF 252 >UniRef50_C0ACQ1 AraC/XylS family transcriptional regulator n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ACQ1_9BACT Length = 105 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 154 KDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYAST 212 + + + + + L +E F + L RM+ AK+L+ + + S+ +IA QCGYAS Sbjct: 21 EKVATAMGVHPNYLSSLAARESDGFHRTLEAIRMERAKHLLSQGKWSIKEIATQCGYASA 80 Query: 213 SYFIYAFRKHFGNSPKRVSKE 233 +F +AFR+ G +P++ SK+ Sbjct: 81 VHFSHAFRRVAGIAPRKASKQ 101 >UniRef50_C7G923 Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G923_9FIRM Length = 280 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 2/106 (1%) Query: 147 PAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQILLDARMQHAKNLIRV-EGSVNKIA 204 P PW + + L++S S L+ +Q ++ +++ R++ A++L+ E S+ I+ Sbjct: 163 PQLPWNINMMAAKLHLSPSHLQTLYHRQFGSSCMDNVIEGRLRRAQDLLEYSEYSIRDIS 222 Query: 205 EQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNA 250 EQCGY + +F FR+H G +P + K S+ + T NT+ Sbjct: 223 EQCGYNNVEHFCRQFRQHNGCTPGQYRKNASAGSNKRLLTHNTLGG 268 >UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0S8_PSEMY Length = 342 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 58/108 (53%), Gaps = 10/108 (9%) Query: 134 SVSGKVRNIVNMKPAH--PWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAK 191 S+S +V ++ + AH P + + + L++SE L+++L +E + Q+L D R Q A+ Sbjct: 236 SLSARVIGLLGEQLAHGEPDRAQ-LARALHLSERTLQRRLAEEGCNYQQLLADTRRQLAE 294 Query: 192 NLIRVEGSVN--KIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 +R EG + +IA GY+ S F AFR+ G P EYR Q Sbjct: 295 RYLR-EGRLPAAEIALLLGYSEPSVFFRAFRQWTGLPP----GEYRAQ 337 >UniRef50_Q1QE65 Transcriptional regulator, AraC family n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QE65_PSYCK Length = 311 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 74/146 (50%), Gaps = 18/146 (12%) Query: 102 NHHNFSELLLFSCLSIF-----AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDI 156 NH ++ +++ CL ++ A ++ + + L+ K ++ P+ W + ++ Sbjct: 171 NH--WASIMMIECLRVYIESLPEATDSWLKAMKDPFLT---KALVAMHENPSQNWSIHEL 225 Query: 157 CDCLYISESLLKKKLKQ----EQTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYAS 211 + +S S ++ K T+ L+D R++ A +R++ S+++I+E GYAS Sbjct: 226 AEVAGMSRSSFAQRFKDVVGMPPLTY---LIDYRLRLAARYLRLQQNSISRISELVGYAS 282 Query: 212 TSYFIYAFRKHFGNSPKRVSKEYRCQ 237 S F AF++ +G SPK ++Y+ Q Sbjct: 283 DSTFSQAFKRVYGISPKAYRQQYQKQ 308 >UniRef50_B7V3C5 Probable transcriptional regulator n=7 Tax=Pseudomonas aeruginosa RepID=B7V3C5_PSEA8 Length = 357 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 1/108 (0%) Query: 121 CKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ 180 C+ + LL G + +VR + + L+++ L++S LK+ L T+F Q Sbjct: 222 CERELALLDAGRRDICARVRLELERQEQRFPNLEEVAARLHLSSRSLKRHLHDAGTSFRQ 281 Query: 181 ILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 +L AR + A L+ R E S+ +IA GY+ + F AF++ G P Sbjct: 282 LLGQARQRQALRLLRRPEVSLQRIALYLGYSDPTNFTRAFKRWTGEPP 329 >UniRef50_A6V4I7 HTH-type transcriptional regulator VqsM (Virulence and quorum sensingmodulator protein) n=6 Tax=Pseudomonas aeruginosa RepID=A6V4I7_PSEA7 Length = 342 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%) Query: 156 ICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSY 214 + L ++E L+++L +E TT+ +L R A+ L+R E + IAE+ GY TS Sbjct: 251 VARQLRVTERTLRRRLAEEGTTYRAVLDLVRRDRARQLLRNECLRIEDIAERLGYMDTSS 310 Query: 215 FIYAFRKHFGNSPKRVSKEYRCQSHT 240 F +AFR+ G + +YR Q HT Sbjct: 311 FRHAFRRWTGQ----CANDYR-QDHT 331 >UniRef50_C0Z962 Probable two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z962_BREBN Length = 234 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 42/195 (21%) Query: 72 VPVPAKFLRASNVP--TGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK-----GF 124 VP+ FL N+P +GL+ L E R H EL++ + F K G Sbjct: 45 VPLHLAFLDI-NLPGKSGLV------LGEELRAQHKDIELIIVTAYQDFHYAKQSIRLGV 97 Query: 125 ITLLTNGVL---------------SVSGKVR------NIVNMKPAHPWKLKDICDCLYIS 163 + +T V+ ++S R NI++ K A L D+ ++I+ Sbjct: 98 VDYITKPVIESELVDILKKYQKSPALSAYTRIISDAMNIIHQKFAEKLNLADLAAEVHIN 157 Query: 164 ESLLKKKLKQE-QTTFSQILLDARMQHAKNLI--RVEGSVNKIAEQCGYASTSYFIYAFR 220 + L ++ +E +FS+ L+ R+Q +K + + S++ +AE+ G+ S YF FR Sbjct: 158 PTYLSRRFHEEVGVSFSEYLMQYRIQMSKKFLIAHPDWSISTVAERTGFNSQHYFSTIFR 217 Query: 221 KHFGNSPKRVSKEYR 235 K G +P KEYR Sbjct: 218 KVVGKTP----KEYR 228 >UniRef50_D1WSG5 Transcriptional regulator, AraC family n=3 Tax=Streptomyces RepID=D1WSG5_9ACTO Length = 265 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 147 PAHPWKLKDICDCLYISESLLKKKLKQEQT-TFSQILLDARMQHAKNLIRVEGSVNKIAE 205 P P + + LY S + L++ + E FS+ R+ H+ +L+ V+ +A Sbjct: 171 PGDPRTASEWAEGLYTSSTSLRRAFRAETGLAFSEWRTRLRLNHSLHLLAAGHMVSTVAA 230 Query: 206 QCGYASTSYFIYAFRKHFGNSP 227 + G+ ST+ +I AFR++FG +P Sbjct: 231 RVGFVSTNGYILAFRRYFGETP 252 >UniRef50_Q01W15 Transcriptional regulator, AraC family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01W15_SOLUE Length = 327 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 16/114 (14%) Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLD 184 + L + GK +++ + +HPW + D+ D + IS S L ++ F++ L + Sbjct: 207 VGWLAGARDPIVGKSLGLLHSRVSHPWTIADLADEVGISRSALVER-------FTRYLSE 259 Query: 185 ARMQH---------AKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 M + A++L + V +IA GY S + F AF++ FG+ P R Sbjct: 260 PPMAYLTRWRLTLAARSLEKTSRGVAEIAADVGYESEAAFNRAFKREFGSPPGR 313 >UniRef50_B3H2Y3 Xylose operon regulatory protein n=7 Tax=Gammaproteobacteria RepID=B3H2Y3_ACTP7 Length = 405 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 152 KLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGY 209 K + + D L IS S L+++ K E T Q++ + ++ AK +++ + S+ +I+E CGY Sbjct: 315 KTEQVLDHLRISRSNLEQRFKHELNKTIHQVIHEEKLNRAKYMLQFTDISIQEISEICGY 374 Query: 210 ASTSYFIYAFRKHFGNSPK 228 S YF F+K + ++PK Sbjct: 375 PSLPYFYSVFKKEYADTPK 393 >UniRef50_B6VKV5 Transcriptional regulator, arac family n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=B6VKV5_PHOAA Length = 346 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Query: 142 IVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLIRVEGSV 200 I+N PW +K + + ++E LK+ + TF Q L + RM A++L++ SV Sbjct: 235 IINNDYHSPWTIKSLSRAVGLNERKLKEGFRAVVFRTFHQYLENVRMTTAEDLLKKGMSV 294 Query: 201 NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 ++ GY+S S+F FR+H+ +PK +Y SHT Sbjct: 295 IDVSTAVGYSSPSHFSKRFRQHYLINPKAWQAKYAV-SHT 333 >UniRef50_C6PV52 Transcriptional regulator, AraC family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PV52_9CLOT Length = 314 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 5/72 (6%) Query: 160 LYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYA 218 +YIS L +K K TFS +L ++RM+ AK L+ + S+ KIA+ GY+++S F A Sbjct: 247 VYISRLLPEKTGK----TFSALLAESRMRRAKLLLDHTDLSIEKIADMLGYSNSSNFYKA 302 Query: 219 FRKHFGNSPKRV 230 F++++G SP+++ Sbjct: 303 FKRYYGTSPRQL 314 >UniRef50_B4UGM6 Transcriptional regulator, AraC family n=4 Tax=Cystobacterineae RepID=B4UGM6_ANASK Length = 299 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 8/118 (6%) Query: 126 TLL--TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT-TFSQIL 182 TLL T G SV+ + IV + P L D+ + + + + ++ E T + + Sbjct: 171 TLLPGTEGT-SVARRALAIVEARALRPLSLSDVARAVGRTPAHVATVVRSETGRTVGEWI 229 Query: 183 LDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 L RM A+ +R G SV IA Q GYA ++FI FR+ G +P ++ R Q H Sbjct: 230 LAQRMAEARRRLRATGGSVEAIAGQVGYADVTHFIRQFRRVHGRTP---AQWRRGQGH 284 >UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VTM5_MARMS Length = 257 Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 4/113 (3%) Query: 123 GFITLLTNG-VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQI 181 G + LL G +S K+ ++ P ++L + +S + L ++LK+E T F + Sbjct: 144 GKLHLLFEGHSVSFEQKITELLQQAPWQDYQLDQVATHFSMSRATLIRRLKEENTQFRTL 203 Query: 182 LLDARMQHAKNLIRVEGSVNK--IAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 L RM +A +L++ +G + IA +CGY S F F K FG +P + K Sbjct: 204 LTRVRMNYALSLMQ-QGYRQQMDIAVRCGYQSQERFSQRFYKSFGITPSQYIK 255 >UniRef50_C6CBK7 Transcriptional regulator, AraC family n=1 Tax=Dickeya dadantii Ech703 RepID=C6CBK7_DICDC Length = 279 Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 1/104 (0%) Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLD 184 + L LS + KV+ +V +P W + L +S S L ++L QE T + + D Sbjct: 171 VVLAPPSALSWTEKVQRLVAQRPHADWSAAGVAAALAVSVSTLNRRLAQEGVTIAACVRD 230 Query: 185 ARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 R+ A L++ + V IA+ GY S S F AFR+ FG P Sbjct: 231 IRLDAALTLLQSSDRPVAVIAQDVGYVSHSKFTAAFRRRFGVVP 274 >UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CLV0_9BACI Length = 525 Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 153 LKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYA 210 L++I D Y+S + +K KQ+ T + L RM+ AKNL++ + ++A GY Sbjct: 438 LQEIADRFYLSREYISRKFKQDYDATITDYLTSIRMEKAKNLLKNPYLKIYEVAYGVGYQ 497 Query: 211 STSYFIYAFRKHFGNSPKRVSKEYRCQS 238 + YF F+KH G +P + Y +S Sbjct: 498 NEKYFSKVFKKHEGVTPNEYRQSYSTKS 525 >UniRef50_A7B0I4 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0I4_RUMGN Length = 573 Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 2/83 (2%) Query: 153 LKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLIRVEGSVN-KIAEQCGYA 210 L D+C+ L IS S K+ TF++ L RM AK L+R N +IAE+ G++ Sbjct: 490 LNDVCEHLNISTSRFSSVFKEATGKTFTEALNGIRMDRAKQLLRETSLKNYEIAEKVGFS 549 Query: 211 STSYFIYAFRKHFGNSPKRVSKE 233 YF AF+K G +PK S+E Sbjct: 550 DPHYFSIAFKKSTGLTPKEYSRE 572 >UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulator ybcM n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFJ5_YERRU Length = 275 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 +V+ + ++++ + P+ W + + + L++S S + L E +F QIL D R+ +A N Sbjct: 158 TVTARCQDLLILSPSARWSARTVAEQLHMSVSTFHRHLAAEGGSFQQILDDVRLGNALNA 217 Query: 194 IRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 I+ + +IA GY S F F+K + +P+ Sbjct: 218 IQTTSKPIGEIARDNGYQCPSRFTSRFQKRYQITPR 253 >UniRef50_A8SS64 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SS64_9FIRM Length = 328 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 152 KLKDICDCLYISESLLKKKLKQEQTTFSQ-ILLDARMQHAKNLIRV-EGSVNKIAEQCGY 209 K+ DI D + IS S L K+E Q L++ R++ A +L+R + +N IA QCGY Sbjct: 227 KIDDIADFIGISRSHLTGSFKKEMGVSPQEYLINFRLEKAASLLRSSKEQINIIAYQCGY 286 Query: 210 ASTSYFIYAFRKHFGNSPK 228 + F AF++ FG SPK Sbjct: 287 EDSLSFSKAFKQKFGMSPK 305 >UniRef50_Q2RW15 Transcriptional regulator, AraC family n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RW15_RHORT Length = 347 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 2/99 (2%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKN-LI 194 G+ R ++ WK+KD+ + ++E+ LK +Q + L D RM+ A + L Sbjct: 237 GQARELLIGDLDKTWKIKDLARHVGMNENKLKAGFRQIYDNSIYAYLQDWRMRAASHRLK 296 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + E SV +A GY++ ++F FR++FG SP R +++ Sbjct: 297 QGEDSVTGVALSVGYSNPAHFAKVFRRYFGVSPSRYAED 335 >UniRef50_B6EKX1 HTH-type transcriptional regulator, AraC family n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKX1_ALISL Length = 259 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 2/92 (2%) Query: 145 MKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RVEGSVNKI 203 M+P+ K++++C L +S++ L ++LK+ T F +I+ RM A L+ + E + I Sbjct: 165 MQPSDH-KIENVCSILGVSKATLIRRLKKAGTQFKKIVRQVRMNKALFLMQKRELLLEDI 223 Query: 204 AEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 + CGY S + F++ FG +PK S ++ Sbjct: 224 SFSCGYQSVELLVVYFKEEFGITPKEYSISFK 255 >UniRef50_Q7NUP3 Probable transcriptional regulator n=1 Tax=Chromobacterium violaceum RepID=Q7NUP3_CHRVO Length = 236 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 2/95 (2%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT-TFSQILLDARMQHAKNL 193 +S ++ ++ + A P + D+ + ++S S +LK E T L RM+ A+ L Sbjct: 132 LSSRLDRFLDGRLARPLAVADMAEACHLSSSQFHARLKAETGLTPMAYLCRMRMERARAL 191 Query: 194 IR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 +R SV +A Q GY S S F A+R+ FG SP Sbjct: 192 LRDSRASVLDVALQVGYQSASAFGAAYRQRFGASP 226 >UniRef50_A5KJJ5 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KJJ5_9FIRM Length = 398 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 5/113 (4%) Query: 126 TLLTNGVLSVSGKVRNIV---NMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQI 181 TLLT+ + + + I+ N + P ++DIC +IS S L+ K T+ Sbjct: 275 TLLTDSKSAQNDLLSEILAYMNKRLTEPLTIEDICHEFFISRSSLQALFKTHLNTSPKNY 334 Query: 182 LLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 LL+ ++Q +K LIR + ++++IA + G++S YF F+K+F +P +++ Sbjct: 335 LLNIKLQKSKELIRENQYTISEIAYRLGFSSIHYFSRLFKKYFNTTPSDYARK 387 >UniRef50_C4GDG8 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GDG8_9FIRM Length = 499 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 153 LKDICDCLYISESLLKKKL-KQEQTTFSQILLDARMQHAKNLIRVEGS--VNKIAEQCGY 209 ++D+CD +S++ L + K E +F QIL RM+ A +I+ S + +A G+ Sbjct: 412 IQDLCDHFSVSQASLSRMFRKHEGASFVQILTKLRMEEATKIIQETPSTLIKDVAAMVGF 471 Query: 210 ASTSYFIYAFRKHFGNSPKRVSKE 233 YF FR +FG SP ++E Sbjct: 472 DDQFYFSRVFRTYFGKSPSTYAEE 495 >UniRef50_Q8XYE5 Probable transcription regulator protein n=1 Tax=Ralstonia solanacearum RepID=Q8XYE5_RALSO Length = 303 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 54/98 (55%), Gaps = 2/98 (2%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLI-R 195 + R ++ + H W L ++ + ++E LK+ + + L + RMQ A +L+ + Sbjct: 204 RARELMLARLHHNWSLAELAQAVNLNERKLKEGFRMLYGNSVHAYLQEKRMQAAAHLLTQ 263 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 E S+ ++ Q GYA+ S+F FR++FG SP+ +++ Sbjct: 264 TELSITEVVLQTGYANPSHFSKLFRRYFGMSPREYARQ 301 >UniRef50_Q11NM6 Transcriptional regulator, AraC family n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11NM6_CYTH3 Length = 329 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNL-IR 195 +V+ I+ P L D+ + +E LKK K+ TT L RM A+ L IR Sbjct: 233 EVKTIIESNLQTPCSLIDLAHLVGTNEYNLKKSFKEVFGTTVFGYLSQIRMDEARQLLIR 292 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 E ++N+I++ GY + ++F AF+KHFG +P + + Sbjct: 293 GEMNINQISDYIGYKNANHFSTAFKKHFGYNPSELKQ 329 >UniRef50_B9R5F4 Transcriptional regulator, AraC family protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R5F4_9RHOB Length = 334 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 4/115 (3%) Query: 125 ITLLTNGVLSVSGKVRN-IVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILL 183 + LL V+G + I++ +P + ++ L + L+++LK+E + I L Sbjct: 212 VALLQGVSQQVAGLIEAAIIDKRPLP--SMDELASLLEMPVYTLRRRLKKEGVSLPDIRL 269 Query: 184 DARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 + HA++++ G S+ IA + G++ TS FI AF++ G +P+ + R Q Sbjct: 270 QVKRDHARSMLAETGESIEAIALRLGFSETSAFIRAFKEWTGVTPRTYRQSGRLQ 324 >UniRef50_C1PB78 Two component transcriptional regulator, AraC family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PB78_BACCO Length = 234 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 67/132 (50%), Gaps = 11/132 (8%) Query: 111 LFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKK 170 L+ L + G+I L++ + V +R + K L D+ +++S + L +K Sbjct: 109 LYRMLENYVNKYGYIEGLSSDIQEVIRIIREDFHSKI----NLADLASQVHVSPNYLSRK 164 Query: 171 LKQE-QTTFSQILLDARMQHAKNLIRV--EGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 +E +F + L+ R++ AK ++ E S+ KIAE+ G+AS +F +F+KH +P Sbjct: 165 FSKELGMSFQEYLIKYRIEMAKVFLKAHPEWSIQKIAEETGFASIYHFSQSFKKHVLETP 224 Query: 228 KRVSKEYRCQSH 239 +YR + H Sbjct: 225 ----TQYREKLH 232 >UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 Tax=Aeromonas RepID=A0KMW4_AERHH Length = 270 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 2/109 (1%) Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 A G L +++ ++ + ++P L+ + +S + + +KL E +F Sbjct: 141 AAGGLDLLFPAHTMTLGERLARYLGVEPGADHTLEGVAPHFAMSRASMARKLAAEGRSFR 200 Query: 180 QILLDARMQHAKNLIRVEGSVN-KIAEQCGYASTSYFIYAFRKHFGNSP 227 Q+L RM HA L++ +G V + A CGY S S F F++ FG +P Sbjct: 201 QLLTQVRMSHALTLLQ-QGLVPLETALACGYDSPSRFAARFKQEFGLTP 248 >UniRef50_Q7UL84 Probable araC family transcription regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UL84_RHOBA Length = 454 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 8/109 (7%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLD----ARMQHAKN 192 G +++ +P H W + ++ + L +S S + K T + L+ R+Q A Sbjct: 200 GAALKLMHERPEHRWTVAELANELSVSRSAFAARFK---TITGRPPLEYLTWWRLQRAAA 256 Query: 193 LIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 +R + ++ ++ GY S + F AFR+ FG SP ++ ++ + +SHT Sbjct: 257 RLRTGDVTLTEVTRNSGYQSEAAFGKAFRREFGISPGQLRRQAKAKSHT 305 >UniRef50_C5RJU1 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJU1_CLOCL Length = 540 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%) Query: 153 LKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYA 210 + D+C+ L+IS++ K+E + TF L RM AK L++ + ++A + GY+ Sbjct: 455 INDLCNHLHISQTYFSLLFKKETKMTFINYLTSIRMDEAKQLLKTTDMKTFEVARKVGYS 514 Query: 211 STSYFIYAFRKHFGNSPKRVSKEYRC 236 +YF Y+F+++ G SP EYR Sbjct: 515 EPNYFSYSFKRYLGMSP----SEYRS 536 >UniRef50_A6Y0W0 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrionaceae RepID=A6Y0W0_VIBCH Length = 328 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 2/107 (1%) Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDAR 186 ++N L+ + ++ +P W + ++C + +E+ K+ K TTFS++L R Sbjct: 217 ISNRTLNRIRQAHAMMASEPEKNWSIGELCRQVGTNETSFKRGFKLLFNTTFSKLLQHTR 276 Query: 187 MQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 M+ A ++R + + IA Q GY S S+F F++HFG +P + K Sbjct: 277 MKIAAEVLRHSDQPIIDIAYQVGYTSPSHFSKLFKQHFGVNPLQYRK 323 >UniRef50_Q1N423 Transcriptional regulator, AraC family protein n=1 Tax=Bermanella marisrubri RepID=Q1N423_9GAMM Length = 363 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Query: 156 ICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSY 214 + L++SE L + L++E T+ QI+ + R+ A+ L+ + S+ IA + G++S S Sbjct: 279 VAQVLHMSERTLTRHLEKESITWRQIVREVRLNKAQLLLSASDKSIQVIAAEVGFSSVSA 338 Query: 215 FIYAFRKHFGNSP 227 F AF KH G SP Sbjct: 339 FSRAFVKHIGMSP 351 >UniRef50_D1TH46 Transcriptional regulator, AraC family n=2 Tax=cellular organisms RepID=D1TH46_9BURK Length = 347 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 10/97 (10%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKK----LKQEQTTFSQILLDARMQHAKN 192 G+ ++++ + AH W ++++ + +S S L ++ L Q Q L RMQ A + Sbjct: 223 GRALSLLHSQAAHAWTVEELARKVGLSRSALAQRFTDLLGQPPM---QYLARWRMQIAAH 279 Query: 193 LIRVEGS--VNKIAEQCGYASTSYFIYAFRKHFGNSP 227 +R+ GS +N +AEQ GY S + F AFR+ FG P Sbjct: 280 ELRI-GSKPLNAVAEQIGYESEAAFSRAFRREFGMPP 315 >UniRef50_A8I129 Transcriptional regulatory protein n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8I129_AZOC5 Length = 316 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%) Query: 162 ISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE----GSVNKIAEQCGYASTSYFIY 217 ++ ++K QE TTFS+ LL+ R+ A L+ E + +A + G+ SYF+ Sbjct: 237 VTGRYVQKLFAQEGTTFSRYLLERRLAAAHALLTSEEGPRARIATVALEAGFGDLSYFVR 296 Query: 218 AFRKHFGNSPKRVSKEYRCQ 237 FR +G P +SK R + Sbjct: 297 TFRTRYGAPPSHISKRERPK 316 >UniRef50_D1N3X5 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3X5_9BACT Length = 286 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 148 AHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIRV-EGSVNKIAE 205 + P + D+ D S ++ +Q E + + + D +M+ A L++ GSV ++AE Sbjct: 196 SRPLSVGDLADAAGCSRWHFSRRFQQLEGKSPHEFVTDLKMRLAVRLLQTTNGSVKEVAE 255 Query: 206 QCGYASTSYFIYAFRKHFGNSP 227 CG+ SYF FR H+G SP Sbjct: 256 NCGFEDASYFCKVFRNHYGVSP 277 >UniRef50_Q1N3Z6 Transcriptional regulator, AraC family protein n=1 Tax=Bermanella marisrubri RepID=Q1N3Z6_9GAMM Length = 330 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 2/102 (1%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKN 192 +V R + M P KL+++ L +++ L ++ T LL R++ AKN Sbjct: 225 TVVEAAREYIRMNYTRPIKLQELAQQLNVTQRTLTRRFNAALGETPIAYLLSYRLKIAKN 284 Query: 193 LIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 L++ + V +IAEQ G+AS + F F+ FG SPK K+ Sbjct: 285 LLKSTDYQVQQIAEQTGHASATVFCRNFKSMFGCSPKEYRKD 326 >UniRef50_UPI0001787D0E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D0E Length = 533 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 157 CDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYF 215 D LY+++S L + K E +FSQ +L +M AK I+ G V A Q GY ++ +F Sbjct: 456 ADRLYVNKSYLSRLFKHEVGESFSQYVLKRKMTLAKQFIQEGGQVGHAARQVGYINSGFF 515 Query: 216 IYAFRKHFGNSPKRVSK 232 F+K++G P + + Sbjct: 516 SKVFQKYWGVLPSEIKQ 532 >UniRef50_D1UDP7 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UDP7_9BURK Length = 246 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%) Query: 149 HPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQ 206 H + D+ +SE ++ +Q+ TT S+ LL AR++ ++ L+ + V+KIA + Sbjct: 154 HEISIADVAQTAAMSERTFLRRFRQQIGTTPSEYLLQARLERSRRLLGESDLPVDKIARR 213 Query: 207 CGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 G + S FRK FG SP E+R ++ TG Sbjct: 214 SGMGNGSQLAKLFRKRFGVSP----TEFRRRARTG 244 >UniRef50_B1SDU2 Putative uncharacterized protein n=1 Tax=Streptococcus infantarius subsp. infantarius ATCC BAA-102 RepID=B1SDU2_9STRE Length = 288 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT-TFSQILLDARMQHAKNLI-R 195 +V+ I++ + +P K+ +I L ++ S L K K+E + L+ RM+ + +L+ R Sbjct: 188 QVKKIIHTQYGNPLKISEIAKKLNLNRSYLYKIFKEETDYSLKDYLIQIRMEKSADLLTR 247 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +++IA G+ F AF+KHFG SP K Sbjct: 248 TTFHISEIANAVGFPDALAFSKAFKKHFGQSPSHYRK 284 >UniRef50_D2Q8B5 Putative uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=D2Q8B5_9BIFI Length = 321 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN-LIRVE 197 +R + P HPWK D+ L +S L++K K+ TT Q +L R+ A++ LI Sbjct: 206 LRMLFLAHPEHPWKAGDLAAALGMSVRTLERKFKEWGTTPHQWILRERLLMAQSLLISTT 265 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 ++ IA G++ T F + FG +P Sbjct: 266 MRIDSIAHAVGFSDTDLMRRHFLRLFGMTP 295 >UniRef50_C1DA10 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DA10_LARHH Length = 296 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Query: 141 NIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHA-KNLIRVEG 198 ++ PAH W L + ++S+S + +++ F LLD +++ A L + + Sbjct: 186 ELIEADPAHDWSLDRLAQHFHMSKSTFCRTVRKNLGLPFHHWLLDKKIRLACLYLQQSDQ 245 Query: 199 SVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 SV IA Q G++S +YF F+KH G++P Sbjct: 246 SVQSIAVQLGFSSATYFTKVFKKHVGHTP 274 >UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBS2_LARHH Length = 262 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 160 LYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYA 218 L +SES L++ L E + ++ R++ A L++ + ++AE CGYAS S F Sbjct: 187 LAMSESTLRRHLADEGHSLRELREHCRLERALALVQTSSLPIGQVAEACGYASASRFSAR 246 Query: 219 FRKHFGNSPK 228 FR FG +P+ Sbjct: 247 FRTRFGCTPR 256 >UniRef50_A8L2S5 Transcriptional regulator, AraC family n=3 Tax=Actinomycetales RepID=A8L2S5_FRASN Length = 263 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Query: 153 LKDICDCLYISESLLKKKLK-QEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYAS 211 L ++ + SE L + + Q TF Q R+ H L+ V +A CGY++ Sbjct: 179 LAELGAAVGASERTLSRLFRRQTGMTFPQWRAQLRLHHGLTLLAGGEPVTTVAFACGYSN 238 Query: 212 TSYFIYAFRKHFGNSPKRVSKEYR 235 S F AFR FG +P R ++E R Sbjct: 239 PSAFTAAFRDAFGVTPARYARETR 262 >UniRef50_C7G6J0 Putative response regulator receiver domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6J0_9FIRM Length = 533 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 153 LKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYA 210 ++ +C L +S + K+E TF L + RM+ A +L+ + IAE+ GY+ Sbjct: 448 VESVCKNLSVSTAYFSTVFKKETGKTFINYLTEYRMEQALDLLLNQDEKTYVIAEKVGYS 507 Query: 211 STSYFIYAFRKHFGNSPKRVSKEYR 235 +YF YAF+K FG SP + E R Sbjct: 508 DPNYFSYAFKKQFGMSPSKYKAEKR 532 >UniRef50_UPI0001973505 two-component response regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973505 Length = 330 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 156 ICDCLYISESLLKKKLKQEQTT-FSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTS 213 +C+ L +S S KK K+E T + + A+M+ A+ L+ N+IA+Q GY S Sbjct: 246 LCEELSLSHSYFSKKFKRETGTGYVTYVTMAKMERARTLMEDPRNRANEIAKQLGYYDYS 305 Query: 214 YFIYAFRKHFGNSPK 228 YF FR++FG SP+ Sbjct: 306 YFFQNFRRYFGCSPR 320 >UniRef50_Q2IYF7 Transcriptional regulator, AraC family n=1 Tax=Rhodopseudomonas palustris HaA2 RepID=Q2IYF7_RHOP2 Length = 326 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Query: 162 ISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGS-----VNKIAEQCGYASTSYFI 216 IS L K T+F Q LL+ R+Q A +I G+ + ++A +CG+ S SYF Sbjct: 240 ISVRYLHKVFHFHGTSFGQRLLELRLQRAHYVISRHGATTTINLGQVAYECGFTSQSYFS 299 Query: 217 YAFRKHFGNSPKRVSKEYR 235 +RK FG +P++ K R Sbjct: 300 TCYRKRFGLTPRQTGKSDR 318 >UniRef50_A6CZ56 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CZ56_9VIBR Length = 316 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 162 ISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVN--KIAEQCGYASTSYFIYAF 219 +S L+++L E+ +F +LLD+R+ HA L +N IA +CGY S F AF Sbjct: 241 MSSRTLQRRLHSEKVSFRDLLLDSRLNHAIKLYNATPILNNEDIAFRCGYTDASNFRRAF 300 Query: 220 RKHFGNSPK 228 +K FG S K Sbjct: 301 KKRFGVSFK 309 >UniRef50_C4GGT9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GGT9_9NEIS Length = 316 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 20/170 (11%) Query: 83 NVPTGLLNEMIAYLNSE-ERNHHN-------FSELLLFSCLSIFAACKGFITLLTNGVLS 134 N P +++ L E +N H+ S +LL L + + LT GVL+ Sbjct: 138 NTPHSTTQAIVSLLQYEISQNEHSTTAAINALSTVLLVHILRTYLSQNEHQAPLT-GVLN 196 Query: 135 --VSGKVRNIVN---MKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDARMQ 188 ++R++V +P W+++++ + +S + L + + Q QT+ + R+Q Sbjct: 197 GWRDRRLRSVVQAVTQEPGRDWRVEELAELAKLSRAQLMRLFRSQMQTSPHAFVSSMRLQ 256 Query: 189 HAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 A L+R + ++ +A + GY S ++F F+KH+G +P K+YR Q Sbjct: 257 KAAMLLRNSQSTILAVALESGYQSETHFGKVFKKHYGCTP----KQYRQQ 302 >UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 Tax=Enterococcus faecium RepID=C9BAM1_ENTFC Length = 483 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 6/103 (5%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-R 195 KV I++ P LK++ + L+++ L + K+E + +FS L RM+ AK L+ Sbjct: 382 KVIVILHQHYQEPLTLKEVSENLHLNVMYLGQLFKKETKKSFSAYLNHLRMEKAKQLLLH 441 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 ++N+IA + GY +T+YF F+K G SP KEYR S Sbjct: 442 SNQNINEIASEIGYNNTTYFSKLFKKIVGRSP----KEYRENS 480 >UniRef50_C7PTR1 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PTR1_CHIPD Length = 298 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 6/106 (5%) Query: 143 VNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDARMQH-AKNLIRVEGSV 200 +N +P L I +++SE+ + +K Q TF++ L++ R+ H A+ L+ + ++ Sbjct: 197 MNRHYGNPIALTAIAKVVHMSEASFSRFMKAQTGLTFTENLVELRLGHVARMLVTTQLTI 256 Query: 201 NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGN 246 +IA CG+ + + F F++H G +P KEYR + M+ GN Sbjct: 257 AEIAYHCGFNNMANFNKLFKRHKGCTP----KEYRSNYNRQMSGGN 298 >UniRef50_A5F384 TCP pilus virulence regulatory protein n=21 Tax=Vibrio cholerae RepID=TCPN_VIBC3 Length = 276 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 1/107 (0%) Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQI 181 K + ++ L K+ +V W+ DIC L + +LKK+L+ F ++ Sbjct: 157 KKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFREL 216 Query: 182 LLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 + R+ ++ +L++ E + +IA Q G+AS SYF F+ +P Sbjct: 217 INSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAP 263 >UniRef50_A6DM00 Transcriptional regulator, AraC/XylS family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DM00_9BACT Length = 282 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Query: 179 SQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 ++ L+ +M++A+ L+ + SV ++A +CGY SYF F+KHFG+SPK Sbjct: 228 NEYLIKTKMEYAQKLLFTQNLSVKQLAHECGYHDPSYFCKVFKKHFGHSPK 278 >UniRef50_A9ACW6 AraC family transcriptional regulator n=3 Tax=Burkholderia multivorans RepID=A9ACW6_BURM1 Length = 339 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 149 HPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG--SVNKIAEQ 206 P +LKDI L SE LK++L++E F I R A+ L+ EG S+ +IA++ Sbjct: 250 RPPQLKDIAALLNTSERTLKRRLQEEGACFRDISNAVRKARAQALV-AEGRLSIKEIAQE 308 Query: 207 CGYASTSYFIYAFRKHFGNSP 227 G++ S F A+++ G +P Sbjct: 309 LGFSDMSSFSQAYKRWTGVAP 329 >UniRef50_P0ACI5 Xylose operon regulatory protein n=151 Tax=Gammaproteobacteria RepID=XYLR_ECO57 Length = 392 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 6/86 (6%) Query: 152 KLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNL-IRVEGSVNKIAEQCGY 209 K+ + D + IS S L+K+ K+E T ++ +++ A++L I S+N+I++ CGY Sbjct: 303 KVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLISTTLSINEISQMCGY 362 Query: 210 ASTSYFIYAFRKHFGNSPKRVSKEYR 235 S YF F+K + +P KEYR Sbjct: 363 PSLQYFYSVFKKAYDTTP----KEYR 384 >UniRef50_C6C3E5 Transcriptional regulator, AraC family n=1 Tax=Dickeya dadantii Ech703 RepID=C6C3E5_DICDC Length = 296 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 2/96 (2%) Query: 148 AHPWKLKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLIRVE-GSVNKIAE 205 A P++L+ C S L+ + KQ+ + SQ L R+ A L+R + +++++A Sbjct: 190 AQPFRLEAFCQQYGFSLRSLRSRFKQQTGMSVSQYLRQLRLCRAMELLRYDRQTISEVAA 249 Query: 206 QCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 QCG+ ++YF F + FG +P + ++ +S G Sbjct: 250 QCGFDDSNYFSVVFHQAFGVTPSSYRQRFQTRSVAG 285 >UniRef50_Q3JJW1 AndR n=53 Tax=Burkholderia RepID=Q3JJW1_BURP1 Length = 405 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 4/94 (4%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIRV 196 + + + + A P +L DI + E L+ Q T+ Q L R++ A+ L+R Sbjct: 302 RAQEFIGAQLAQPLQLADIAQAAGVPERTLRDGFLQFRGTSPMQYLRQRRLERARELLRT 361 Query: 197 EGSVNKIAE---QCGYASTSYFIYAFRKHFGNSP 227 +IAE CG+A F A+R+ FG P Sbjct: 362 AAPERRIAEIALDCGFAHFGRFAIAYRERFGELP 395 >UniRef50_C5C0Z0 Transcriptional regulator, AraC family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C0Z0_BEUC1 Length = 329 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 5/100 (5%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR 195 G+ ++ +P W+++D+ + S S ++ + + ++ + RM+ A+ L+R Sbjct: 223 GRALEAIHAEPGSSWRVEDLARLAHSSRSQFAERFRSSVGESPARYVTGVRMRRAEELLR 282 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 V+++A GY S F AFR+H G +P E+R Sbjct: 283 TGRGVSEVAFALGYDSDEGFSRAFRRHSGLAP----SEWR 318 >UniRef50_B4WXJ1 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXJ1_9GAMM Length = 331 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 153 LKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYAS 211 L + D L++S L +KLKQE T F Q+ + A L+ + +V +AE GY Sbjct: 250 LDTVADQLHMSPRTLIRKLKQENTRFQQLRDQTLSRRAAQLLGLPHYTVAAVAEDLGYTD 309 Query: 212 TSYFIYAFRKHFGNSPKRVSKE 233 + F AF++ FG +P +E Sbjct: 310 VASFRRAFQRWFGTTPGSFRRE 331 >UniRef50_P68913 Uncharacterized HTH-type transcriptional regulator Rv1395/MT1440 n=15 Tax=Mycobacterium RepID=Y1395_MYCTU Length = 344 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 155 DICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTS 213 D+ L + L+++L +E T+F +L +AR A +L+R G +V +++ + GY S Sbjct: 264 DVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVSTRLGYTEVS 323 Query: 214 YFIYAFRKHFGNSPKRVSK 232 F +AF++ +G +P S+ Sbjct: 324 TFSHAFKRWYGVAPSEYSR 342 >UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein n=10 Tax=Acinetobacter RepID=B2HXY7_ACIBC Length = 344 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 152 KLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYA 210 K+K + + +SE L++ L E T+FS ++ R Q+A++L++ S+ +A GYA Sbjct: 252 KVKQVAQMMNMSERSLQRYLAIENTSFSALVDLTRKQYAQDLLQNSSMSIEAVALSLGYA 311 Query: 211 STSYFIYAFRKHFGNSPK 228 T +F AF++ G +PK Sbjct: 312 DTPHFTRAFKRWMGVTPK 329 >UniRef50_C6CT15 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT15_PAESJ Length = 520 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 7/100 (7%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT-TFSQILLDARMQHAKNLI--R 195 V+ ++ +L ++ + ++++ S L KQE T +Q +L RM AK L+ R Sbjct: 423 VKQLIQQDYDKDLELTELSEKVFLNPSYLSTLFKQETGLTITQYVLQLRMMKAKELLKKR 482 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 ++ V ++ EQ GY + YF F+K G +P KEYR Sbjct: 483 LDLKVYEVGEQVGYPDSIYFNKVFKKMVGITP----KEYR 518 >UniRef50_C0A2A3 AraC-type DNA-binding domain-containing protein-like protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2A3_9BACT Length = 424 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 12/99 (12%) Query: 150 PWKLKDICDCLYIS----ESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RVEGSVNKIA 204 PW + ++ D S L ++ K+ T ++ DA MQHA +L+ R + + +I+ Sbjct: 332 PWTVDELADQAGCSIAHLHRLTQRLFKKSPGT---LIRDAHMQHASDLLARTDYKLEQIS 388 Query: 205 EQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMN 243 GYA F AF++H G SP ++R + H G N Sbjct: 389 TLVGYADAFTFARAFKRHTGESP----GQHRTRLHDGQN 423 >UniRef50_D2YK24 Type 4 prepilin-like protein leader peptide-processing enzyme n=1 Tax=Vibrio mimicus VM573 RepID=D2YK24_VIBMI Length = 533 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRV- 196 K+ +V W+ DIC L + +LKK+L+ F +++ R+ ++ +L++ Sbjct: 173 KISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTG 232 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 E + +IA Q G+AS SYF F+ +P Sbjct: 233 EFKIKQIAYQSGFASVSYFSTVFKSTMNVAP 263 >UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C5C3_9GAMM Length = 275 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Query: 153 LKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYAS 211 ++ +C +SES L++KLK E T I R+ +L++ S+ IA CGY S Sbjct: 183 IESLCQRFAMSESTLRRKLKAEGITLQDIKDQVRLGQGLHLLQSTRKSIGMIANVCGYQS 242 Query: 212 TSYFIYAFRKHFGNSPKRVSK 232 S F F+ FG +P ++ K Sbjct: 243 QSRFSERFKYRFGLTPSQLRK 263 >UniRef50_A5W7M3 Transcriptional regulator, AraC family n=3 Tax=Pseudomonas RepID=A5W7M3_PSEP1 Length = 309 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 153 LKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKN-LIRVEGSVNKIAEQCGYA 210 L+ + Y+S + L L++E TFS+++L+ RM A+N L+ V ++A CG+A Sbjct: 215 LQKVAAATYLSPTYLTHWLRKEIGKTFSELVLERRMHAARNYLLNGSRPVGEVARLCGFA 274 Query: 211 STSYFIYAFRKHFGNSPKRVSKEYR 235 +YF FR+ G P + ++ R Sbjct: 275 DEAYFSRRFRQIHGLPPGQFRRQQR 299 >UniRef50_Q7MR75 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes RepID=Q7MR75_WOLSU Length = 312 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 4/101 (3%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRV 196 K R I+ +P L ++ ++++E LK K+ ++L RMQ A+ L+ Sbjct: 212 KARVILEQNLKNPPSLIELSRAIHLNEFKLKFGFKRLFGVAPYEMLFLFRMQRARGLLE- 270 Query: 197 EG--SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 EG SV ++A++ GYA S F AF +HFG PK V+K ++ Sbjct: 271 EGIFSVGEVAKEVGYAQQSSFSAAFFRHFGVLPKEVAKSWK 311 >UniRef50_C6IWB5 Predicted protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWB5_9BACL Length = 531 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 152 KLKDICDCLYISESLLKKKLKQEQTTFSQILLD-ARMQHAKNLIRVEGSVNKIAEQCGYA 210 KL+ + + S S L + K E + LD R++ AK L+R V ++AEQ GYA Sbjct: 427 KLETLSEVFNYSSSYLGQLFKNETGEYFNAYLDKVRIEKAKQLLRQGMKVYEVAEQVGYA 486 Query: 211 STSYFIYAFRKHFGNSPKRVSKE 233 + +YF + F+K G+SP K+ Sbjct: 487 NVNYFHHKFKKLVGHSPSSYQKK 509 >UniRef50_A9CU20 Transcriptional regulator, AraC family protein n=1 Tax=Kordia algicida OT-1 RepID=A9CU20_9FLAO Length = 281 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 8/55 (14%) Query: 181 ILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 ILL+A+ +NL+ +N+IA GY TSYFI F+KH G SP KEYR Sbjct: 231 ILLEAK----RNLLGTSNQINQIAHYLGYEDTSYFIRFFKKHIGTSP----KEYR 277 >UniRef50_B7S369 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S369_9GAMM Length = 357 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 59/98 (60%), Gaps = 4/98 (4%) Query: 133 LSVSGKVRNIV--NMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA 190 SV+ ++R I+ + + P +++ L +S L+++L++E T++ +I +AR A Sbjct: 257 FSVTHRIRKILGDDFRAEMP-SFEELTSLLNMSARTLRRRLEKEGTSYQRIKDNARRDAA 315 Query: 191 KNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 +L+ EG +V+++AE+ G++ S F +F+K G SP Sbjct: 316 ISLLSREGLTVSEVAERVGFSDPSAFHRSFKKWTGLSP 353 >UniRef50_C9PF84 Transcriptional regulator AraC family n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PF84_VIBFU Length = 248 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Query: 141 NIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGS 199 + V+ + AHPW D L SE + +K +QE TF++ L R+ HA L+ S Sbjct: 152 DYVSDRIAHPWTATDAAKYLGQSERTVSRKFQQELGLTFTEWLRQKRLVHALELLASGHS 211 Query: 200 VNKIAEQCGYASTSYFIYAFRKHFGNSP 227 V A + GY S S F F+ G +P Sbjct: 212 VLDSALEIGYDSPSAFSAMFKSRIGLTP 239 >UniRef50_C9NYS3 Transcriptional regulator AraC family n=9 Tax=Vibrionales RepID=C9NYS3_9VIBR Length = 349 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE 197 K+ I +P ++ + L +S L++ LK EQT + QIL R AK + Sbjct: 243 KITQIFIERPGRYPSIEALSSELGMSSRTLRRHLKAEQTGYQQILDHVRFHLAKYYLVST 302 Query: 198 G-SVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 G ++ +I+E+ G++ ++ F +AFRK G SPK Sbjct: 303 GLNIEEISERVGFSDSANFRHAFRKWNGCSPK 334 >UniRef50_Q15PL3 Transcriptional regulator, AraC family n=3 Tax=Alteromonadales RepID=Q15PL3_PSEA6 Length = 296 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 6/88 (6%) Query: 148 AHPWKLKDICDCLYISESLLKKKLKQEQTTFS---QILLDARMQHAKNLIRVEGS-VNKI 203 A P ++ + D + +S S + KQ TF Q L R+ AK+LI GS N+ Sbjct: 208 ASPITVETLADDVNMSVSAFHRAFKQ--VTFESPLQYLKKVRLVKAKDLITANGSRANEA 265 Query: 204 AEQCGYASTSYFIYAFRKHFGNSPKRVS 231 A Q GY S S F F++HF SP VS Sbjct: 266 AFQVGYTSASQFSREFKRHFNQSPSEVS 293 >UniRef50_UPI0001C37E0B transcriptional regulator, LacI family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E0B Length = 746 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 6/91 (6%) Query: 147 PAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIA 204 P W + DI IS+S ++ ++ T+ +++AR++ AK L+ + + IA Sbjct: 653 PQLDWNVDDIAHEAGISKSYFQRLYRETFNTSCMDDIINARIERAKRLLENTDRQIGDIA 712 Query: 205 EQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 E+CGYAS S+F+ FR+ G + EYR Sbjct: 713 EECGYASGSHFMRQFRQKTG----LTASEYR 739 >UniRef50_C9Y8T8 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y8T8_9BURK Length = 299 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Query: 180 QILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 Q++L R+ A L+ + ++ ++A CG+AS SYFI FR+HFG +PK Sbjct: 240 QVILQQRLARAARLLTEGDAAIKEVAWCCGFASASYFIRCFRQHFGLTPK 289 >UniRef50_C0D4G6 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D4G6_9CLOT Length = 259 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 4/84 (4%) Query: 153 LKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGS--VNKIAEQCGY 209 ++D+ D L SE+ L +K K TTF+ L R+Q A +IR +G + IA + G Sbjct: 174 MQDLVDHLNYSEAFLNRKFKDAVGTTFNDYLNRYRIQKALEMIR-QGDLPIQDIAWKSGI 232 Query: 210 ASTSYFIYAFRKHFGNSPKRVSKE 233 YF FRK+ G SPK KE Sbjct: 233 GDYKYFRVVFRKYLGCSPKEYMKE 256 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 2/96 (2%) Query: 143 VNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLIRVEG-SV 200 + + A L+DI D +++S + + + K+E +++ L+ RM+ AK L++ + V Sbjct: 443 ITLHYAEDLMLQDIADHVHLSRTYISELFKKETGMNYNEYLMQVRMEKAKELLKRQTLKV 502 Query: 201 NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 A GY++TSYFI F+ + G SP ++ R Sbjct: 503 ADAAALVGYSNTSYFIKLFKNYTGLSPSEYMEQQRS 538 >UniRef50_A9WH32 Sensor protein n=2 Tax=Chloroflexus RepID=A9WH32_CHLAA Length = 1202 Score = 48.1 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 6/89 (6%) Query: 149 HPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQ 206 HP +DI + +SE L +QE TT + L R+ A++L+ + S+ IA + Sbjct: 1110 HPLTRQDIAHYVGMSEDYLTHCFRQELGTTPVEYLNRYRVLQARHLLAESDKSITNIALE 1169 Query: 207 CGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 G++S+SYF FRK G SP +EYR Sbjct: 1170 VGFSSSSYFSRVFRKEVGQSP----EEYR 1194 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 351 1e-95 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 226 5e-58 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 224 2e-57 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 222 8e-57 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 220 3e-56 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 217 4e-55 UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 213 5e-54 UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 208 2e-52 UniRef50_C6UPG2 Putative envelope protein encoded within prophag... 202 1e-50 UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 146 5e-34 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 145 1e-33 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 143 4e-33 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 141 2e-32 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 140 3e-32 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 133 8e-30 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 132 1e-29 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 131 3e-29 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 130 4e-29 UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma pro... 130 5e-29 UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein ... 129 7e-29 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 129 1e-28 UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=E... 129 1e-28 UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=g... 127 3e-28 UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n... 126 6e-28 UniRef50_C3K2A2 Putative putative AraC-family regulatory protein... 126 9e-28 UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein ... 125 1e-27 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 125 2e-27 UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein ... 125 2e-27 UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonel... 124 2e-27 UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein ... 124 2e-27 UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax... 124 2e-27 UniRef50_A4TFK9 Transcriptional regulator, AraC family n=11 Tax=... 124 3e-27 UniRef50_D0LYU6 Transcriptional regulator, AraC family n=1 Tax=H... 123 7e-27 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 123 8e-27 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 122 1e-26 UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n... 122 1e-26 UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=A... 122 1e-26 UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n... 121 2e-26 UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=A... 121 2e-26 UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=... 121 2e-26 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 121 2e-26 UniRef50_Q6FBV2 Putative transcriptional regulator (AraC family)... 121 3e-26 UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n... 121 3e-26 UniRef50_UPI0001C3522D two-component system, response regulator ... 121 3e-26 UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=M... 120 4e-26 UniRef50_C9NYS3 Transcriptional regulator AraC family n=9 Tax=Vi... 120 4e-26 UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n... 120 4e-26 UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 ... 120 5e-26 UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 T... 120 5e-26 UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=B... 120 5e-26 UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11... 120 5e-26 UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=S... 119 6e-26 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 119 7e-26 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 119 7e-26 UniRef50_A6GTF5 Transcriptional regulator, AraC family protein n... 119 9e-26 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 119 1e-25 UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Esch... 119 1e-25 UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n... 119 1e-25 UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=m... 118 2e-25 UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=m... 118 2e-25 UniRef50_D0S2A2 Transcriptional regulator n=1 Tax=Acinetobacter ... 118 2e-25 UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromob... 118 2e-25 UniRef50_UPI0001789612 two component transcriptional regulator, ... 118 2e-25 UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=... 118 2e-25 UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Ent... 118 2e-25 UniRef50_D1X8C9 Transcriptional regulator, AraC family n=2 Tax=S... 118 2e-25 UniRef50_Q1QE65 Transcriptional regulator, AraC family n=1 Tax=P... 117 3e-25 UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC ... 117 3e-25 UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=... 117 3e-25 UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=G... 117 3e-25 UniRef50_B1SDU2 Putative uncharacterized protein n=1 Tax=Strepto... 117 3e-25 UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=... 117 3e-25 UniRef50_A9WH32 Sensor protein n=2 Tax=Chloroflexus RepID=A9WH32... 117 4e-25 UniRef50_B7V3C5 Probable transcriptional regulator n=7 Tax=Pseud... 117 4e-25 UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein ... 117 4e-25 UniRef50_A1HM14 Two component transcriptional regulator, AraC fa... 116 5e-25 UniRef50_Q9Z3Q6 Transcriptional activator rhrA n=1 Tax=Sinorhizo... 116 6e-25 UniRef50_Q399T6 Transcriptional regulator, AraC family n=18 Tax=... 116 6e-25 UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=C... 116 6e-25 UniRef50_Q397S2 Transcriptional regulator, AraC family n=4 Tax=B... 116 6e-25 UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecali... 116 7e-25 UniRef50_C6B202 Transcriptional regulator, AraC family n=3 Tax=R... 116 7e-25 UniRef50_B0NBQ5 Putative uncharacterized protein n=2 Tax=Clostri... 116 7e-25 UniRef50_B4WXJ1 Transcriptional regulator, AraC family protein n... 116 7e-25 UniRef50_B2HU78 AraC-type DNA-binding domain-containing protein ... 116 8e-25 UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=P... 116 8e-25 UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=A... 116 8e-25 UniRef50_B2JSH9 Transcriptional regulator, AraC family n=1 Tax=B... 116 9e-25 UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 ... 116 9e-25 UniRef50_C9P3F6 Signal transduction histidine kinase n=2 Tax=Vib... 116 1e-24 UniRef50_Q0BZ29 Transcriptional regulator, AraC family n=1 Tax=H... 115 1e-24 UniRef50_C7RUT1 Transcriptional regulator, AraC family n=1 Tax=C... 115 1e-24 UniRef50_C6W9P9 Transcriptional regulator, AraC family n=1 Tax=A... 115 1e-24 UniRef50_B7S369 Transcriptional regulator, AraC family n=1 Tax=m... 115 1e-24 UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepI... 115 1e-24 UniRef50_C4GGT9 Putative uncharacterized protein n=1 Tax=Kingell... 115 1e-24 UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotro... 115 1e-24 UniRef50_P23774 987P fimbrial operon positive regulatory protein... 115 2e-24 UniRef50_Q7MF52 AraC-type DNA-binding domain-containing protein ... 115 2e-24 UniRef50_C7GA03 DNA-bindng response regulator, AraC family n=2 T... 115 2e-24 UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein ... 114 2e-24 UniRef50_C6CT15 Two component transcriptional regulator, AraC fa... 114 2e-24 UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Ac... 114 2e-24 UniRef50_UPI0001C36B1C two component transcriptional regulator, ... 114 2e-24 UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnos... 114 2e-24 UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 T... 114 2e-24 UniRef50_B4X435 Transcriptional regulator, AraC family protein n... 114 3e-24 UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=P... 114 3e-24 UniRef50_A8VRA4 Response regulator receiver protein n=1 Tax=Baci... 114 3e-24 UniRef50_P32677 Uncharacterized HTH-type transcriptional regulat... 114 3e-24 UniRef50_Q0VPB7 Transcriptional regulator, AraC family n=1 Tax=A... 114 3e-24 UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory ... 114 3e-24 UniRef50_A6P0J9 Putative uncharacterized protein n=1 Tax=Bactero... 114 3e-24 UniRef50_C3SIM7 Membrane protein n=86 Tax=Enterobacteriaceae Rep... 114 3e-24 UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like pr... 114 3e-24 UniRef50_A3M7C3 Putative transcriptional regulator (AraC family)... 114 4e-24 UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=P... 113 4e-24 UniRef50_B8FH05 Transcriptional regulator, AraC family n=1 Tax=D... 113 4e-24 UniRef50_A7HAQ8 Helix-turn-helix-domain containing protein AraC ... 113 4e-24 UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryante... 113 6e-24 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 113 6e-24 UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmone... 113 7e-24 UniRef50_C5C0Z0 Transcriptional regulator, AraC family n=1 Tax=B... 113 7e-24 UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. ora... 113 8e-24 UniRef50_A0Z5W7 AraC-type DNA-binding domain-containing protein ... 113 9e-24 UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V... 112 9e-24 UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 ... 112 1e-23 UniRef50_C6LHJ3 Two-component response regulator n=2 Tax=Clostri... 112 1e-23 UniRef50_P0A2T2 Virulence regulon transcriptional activator virF... 112 1e-23 UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=A... 112 1e-23 UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillu... 112 1e-23 UniRef50_A6Y0W0 AraC-type DNA-binding domain-containing protein ... 112 1e-23 UniRef50_UPI000196B709 hypothetical protein CATMIT_00139 n=1 Tax... 112 1e-23 UniRef50_Q1ZVK9 Transcriptional regulatory, AraC-like protein n=... 112 1e-23 UniRef50_D1PRZ9 DNA-bindng response regulator, AraC family n=2 T... 112 1e-23 UniRef50_C6CUY4 Two component transcriptional regulator, AraC fa... 111 2e-23 UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC ... 111 2e-23 UniRef50_B4SMK6 Transcriptional regulator, AraC family n=3 Tax=S... 111 2e-23 UniRef50_C9Y4B2 Putative uncharacterized protein n=1 Tax=Cronoba... 111 2e-23 UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein ... 111 2e-23 UniRef50_Q8XYE5 Probable transcription regulator protein n=1 Tax... 111 2e-23 UniRef50_C4ZBY2 Two-component response regulator n=4 Tax=Clostri... 111 2e-23 UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulat... 111 2e-23 UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=D... 111 2e-23 UniRef50_D0SI20 AraC-type DNA-binding domain-containing protein ... 111 2e-23 UniRef50_A1TVA8 Transcriptional regulator, AraC family n=17 Tax=... 111 3e-23 UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escheric... 111 3e-23 UniRef50_C9RT55 Two component transcriptional regulator, AraC fa... 111 3e-23 UniRef50_D1N3X5 Transcriptional regulator, AraC family n=1 Tax=V... 111 3e-23 UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein ... 111 3e-23 UniRef50_A9IHK1 Transcriptional regulator, AraC family n=1 Tax=B... 111 3e-23 UniRef50_Q1N3Z6 Transcriptional regulator, AraC family protein n... 111 3e-23 UniRef50_C6J482 Two component transcriptional regulator n=1 Tax=... 111 3e-23 UniRef50_A7B5D7 Putative uncharacterized protein n=1 Tax=Ruminoc... 110 4e-23 UniRef50_A6B243 Transcriptional activator of virulence loci n=4 ... 110 4e-23 UniRef50_B9DSF4 AraC family regulatory protein n=1 Tax=Streptoco... 110 4e-23 UniRef50_P77634 Uncharacterized HTH-type transcriptional regulat... 110 4e-23 UniRef50_C6CT66 Two component transcriptional regulator, AraC fa... 110 4e-23 UniRef50_A6BKJ9 Putative uncharacterized protein n=1 Tax=Dorea l... 110 4e-23 UniRef50_C0Z962 Probable two-component response regulator n=1 Ta... 110 4e-23 UniRef50_Q39GD4 Transcriptional regulator, AraC family n=7 Tax=B... 110 5e-23 UniRef50_A9FPY9 Transcriptional regulator, AraC family n=1 Tax=S... 110 5e-23 UniRef50_A6F6Z7 Probable transcriptional regulator n=1 Tax=Morit... 110 5e-23 Sequences not found previously or not previously below threshold: UniRef50_C6LLK3 Putative two-component response regulator n=1 Ta... 122 1e-26 UniRef50_C9RVZ3 Two component transcriptional regulator, AraC fa... 121 2e-26 UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=E... 121 2e-26 UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=B... 119 1e-25 UniRef50_A6GTF7 Putative transcriptional regulator n=1 Tax=Limno... 118 1e-25 UniRef50_C5D8H7 Two component transcriptional regulator, AraC fa... 118 3e-25 UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=... 117 4e-25 UniRef50_C6D5X4 Two component transcriptional regulator, AraC fa... 117 4e-25 UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=D... 116 6e-25 UniRef50_D0IVW4 Transcriptional regulator, AraC family n=1 Tax=C... 116 7e-25 UniRef50_Q3ADL3 Transcriptional regulator, AraC family n=1 Tax=C... 116 8e-25 UniRef50_B8I425 Two component transcriptional regulator, AraC fa... 116 9e-25 UniRef50_A3WY00 Transcriptional regulator, AraC family protein n... 116 1e-24 UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillu... 115 2e-24 UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein ... 114 2e-24 UniRef50_A1TY01 Transcriptional regulator, AraC family n=2 Tax=M... 114 3e-24 UniRef50_C6QRS7 Two component transcriptional regulator, AraC fa... 114 3e-24 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 114 3e-24 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 114 3e-24 UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein ... 114 3e-24 UniRef50_A9KQP4 Two component transcriptional regulator, AraC fa... 114 3e-24 UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein ... 114 3e-24 UniRef50_C6CTP9 Two component transcriptional regulator, AraC fa... 113 4e-24 UniRef50_A1TXY8 Transcriptional regulator, AraC family n=2 Tax=M... 113 4e-24 UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein ... 113 4e-24 UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bactero... 113 4e-24 UniRef50_B5XWK6 Transcriptional regulator, AraC family n=5 Tax=K... 113 5e-24 UniRef50_B9JNI2 Transcriptional regulator protein n=2 Tax=Bacter... 113 5e-24 UniRef50_Q2SUV3 Transcriptional regulator, AraC family n=34 Tax=... 113 6e-24 UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clost... 113 7e-24 UniRef50_A8S8Z3 Putative uncharacterized protein n=1 Tax=Faecali... 113 8e-24 UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33... 113 8e-24 UniRef50_A4A9K9 AraC-family transcriptional regulator n=3 Tax=un... 113 9e-24 UniRef50_C6D127 Two component transcriptional regulator, AraC fa... 112 1e-23 UniRef50_C2L0L9 Response regulator receiver protein n=2 Tax=Lach... 112 1e-23 UniRef50_D2LGD7 Transcriptional regulator, AraC family n=1 Tax=R... 112 1e-23 UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=... 112 1e-23 UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC... 112 1e-23 UniRef50_A5GD53 Transcriptional regulator, AraC family n=1 Tax=G... 112 1e-23 UniRef50_C6D477 Transcriptional regulator, AraC family n=1 Tax=P... 112 1e-23 UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostri... 112 1e-23 UniRef50_Q0VSF4 Transcriptional regulator, AraC family n=2 Tax=A... 112 1e-23 UniRef50_A9FWP2 Transcriptional regulator, AraC family n=1 Tax=S... 112 1e-23 UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. ora... 112 1e-23 UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=... 111 2e-23 UniRef50_C6D151 Two component transcriptional regulator, AraC fa... 111 2e-23 UniRef50_B7GW45 Bacterial regulatory helix-turn-helix protein, A... 111 2e-23 UniRef50_C6IYS4 Response regulator n=1 Tax=Paenibacillus sp. ora... 111 2e-23 UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyri... 111 2e-23 UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein ... 111 2e-23 UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=... 111 2e-23 UniRef50_A4Y0K0 Transcriptional regulator, AraC family n=8 Tax=P... 111 2e-23 UniRef50_C6LM61 Putative raffinose operon transcriptional regula... 111 2e-23 UniRef50_A5Z7W7 Putative uncharacterized protein n=1 Tax=Eubacte... 111 2e-23 UniRef50_B8FUQ5 Transcriptional regulator, AraC family n=2 Tax=D... 111 2e-23 UniRef50_Q2RGN4 Two component transcriptional regulator, AraC fa... 111 2e-23 UniRef50_UPI0001788F54 two component transcriptional regulator, ... 111 2e-23 UniRef50_C0ZD41 Probable transcriptional regulator n=1 Tax=Brevi... 111 2e-23 UniRef50_C6CWF4 Two component transcriptional regulator, AraC fa... 111 2e-23 UniRef50_B0P6G3 Putative uncharacterized protein n=1 Tax=Anaerot... 111 2e-23 UniRef50_C6D8S9 Two component transcriptional regulator, AraC fa... 111 2e-23 UniRef50_A7MK74 Putative uncharacterized protein n=2 Tax=Enterob... 111 2e-23 UniRef50_C6D3S3 Two component transcriptional regulator, AraC fa... 111 2e-23 UniRef50_A4XJL7 Transcriptional regulator, AraC family n=2 Tax=C... 111 3e-23 UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bactero... 111 3e-23 UniRef50_UPI0001692C08 transcriptional regulator (AraC/XylS fami... 111 3e-23 UniRef50_Q1LKT4 Transcriptional regulator, AraC family n=3 Tax=P... 111 3e-23 UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein ... 111 3e-23 UniRef50_UPI00017895AE two component transcriptional regulator, ... 111 3e-23 UniRef50_C0EIY2 Putative uncharacterized protein n=1 Tax=Clostri... 111 3e-23 UniRef50_C5BUW4 Transcriptional regulator, AraC family n=1 Tax=B... 111 3e-23 UniRef50_B8FM47 Transcriptional regulator, AraC family n=1 Tax=D... 111 3e-23 UniRef50_C5EU48 Response regulator receiver protein n=4 Tax=Clos... 111 3e-23 UniRef50_Q2GAB8 Transcriptional regulator, AraC family n=1 Tax=N... 111 3e-23 UniRef50_A8RKC7 Putative uncharacterized protein n=1 Tax=Clostri... 111 3e-23 UniRef50_C5EK80 Putative uncharacterized protein n=2 Tax=Clostri... 110 4e-23 UniRef50_Q391T4 Transcriptional regulator, AraC family n=8 Tax=P... 110 4e-23 UniRef50_C6CZ23 Two component transcriptional regulator, AraC fa... 110 4e-23 UniRef50_UPI0000F30067 putative transcriptional regulator AraC/X... 110 4e-23 UniRef50_C5T965 Transcriptional regulator, AraC family n=1 Tax=A... 110 5e-23 UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostri... 110 5e-23 UniRef50_A5EF29 Transcriptional regulator, AraC family n=2 Tax=P... 110 5e-23 UniRef50_A4VG28 Transcriptional regulator, AraC family n=1 Tax=P... 110 5e-23 UniRef50_B1Q2A8 Transcriptional activator for nphA1A2 n=4 Tax=No... 110 5e-23 UniRef50_B4X0B5 Transcriptional regulator, AraC family protein n... 110 5e-23 UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=... 110 5e-23 UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecali... 110 5e-23 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 351 bits (901), Expect = 1e-95, Method: Composition-based stats. Identities = 249/253 (98%), Positives = 250/253 (98%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGF ENTIKK Sbjct: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFNENTIKK 60 Query: 61 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA Sbjct: 61 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 Query: 121 CKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ 180 CKGFITLLTNGVLSVSGKVRNIVNMK AHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ Sbjct: 121 CKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ 180 Query: 181 ILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 ILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ HT Sbjct: 181 ILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQRHT 240 Query: 241 GMNTGNTMNALAI 253 GMNTGNTM+ALAI Sbjct: 241 GMNTGNTMSALAI 253 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 226 bits (577), Expect = 5e-58, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 134/246 (54%), Gaps = 5/246 (2%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M+ CSVI I +F+ + G ++VD++ R F Y F I + Sbjct: 4 MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISR 63 Query: 61 YLQCTNIQTVT-VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 YL+ N++ ++ +L+ + L+ +I++ N F E + F+CLS F+ Sbjct: 64 YLKANNLRDISDCREYPSYLKINFADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAFS 123 Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 + K F L + S KV+ I++ + PW+LKDI LY+SESLLK+KLK+E +FS Sbjct: 124 SEKQFGVFLFECLKSTEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKEEGVSFS 183 Query: 180 QILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK---EYR 235 +I+LD RMQ A+ L+ ++K+A+ CGYAS SYF Y FR++FG SP + S+ E + Sbjct: 184 KIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSESK 243 Query: 236 CQSHTG 241 +H G Sbjct: 244 ILTHQG 249 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 224 bits (571), Expect = 2e-57, Method: Composition-based stats. Identities = 89/230 (38%), Positives = 142/230 (61%), Gaps = 1/230 (0%) Query: 3 LVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYL 62 +VC VI ++ F I K F ++L+ DN ++ F + + E+ E ++KY+ Sbjct: 2 IVCYVILVNRPFETEIAGKKLFFQKNDVLLTDNISQSFFLRHPGNVTELRIDECIVRKYM 61 Query: 63 QCTN-IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC 121 + + IQ V F++ + LL+ ++ L+ ++ FSE + F+CLSIF+ Sbjct: 62 ESADRIQHSDSAVSVPFIKTTFSHIALLHNVMQNLSLQKTLPQQFSEQMFFACLSIFSTH 121 Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQI 181 +GF+ LL + SV+ KVR I+ P+ W++KDI + LY+SESLLK+KL++E+ +FSQI Sbjct: 122 RGFMFLLFRCINSVALKVRYIICSSPSRAWRVKDISNSLYMSESLLKRKLQEEKVSFSQI 181 Query: 182 LLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 LLD RM +A+ LI + SVN+IA +CGYAST YFI FR++FG +P ++ Sbjct: 182 LLDIRMHNARQLISSKLSVNQIAIRCGYASTPYFISVFREYFGITPHQMM 231 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 222 bits (566), Expect = 8e-57, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 1/233 (0%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M VC I I N L + G++L++ ++ R + Y + EI E+T++ Sbjct: 7 MPGVCYFILIKKPINFQFLKDFLILNYGDVLLLKHSERDFLQSYSDKYLEIELNEDTVRN 66 Query: 61 YLQCTN-IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 YL N + + P LR S LL MI +NS+ H +F + + FS LS+F+ Sbjct: 67 YLSYYNHCEKQFLETPPCILRKSFAYPDLLISMIDNINSQNHIHPDFKDAIFFSLLSVFS 126 Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 LT+G+ + SGKVR+I + WKL+D+ D LY+SESL+KKKL E T+FS Sbjct: 127 DVANLRAFLTSGMPTFSGKVRSIFLSDVSKHWKLRDLADYLYMSESLIKKKLLLENTSFS 186 Query: 180 QILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +ILLD RM A L++ + ++E CG++STSYF+ FR+++ +P++ K Sbjct: 187 KILLDTRMSLAIKLLKQNHPIKYVSEMCGFSSTSYFVCLFRQYYECTPRKYLK 239 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 220 bits (561), Expect = 3e-56, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 3/234 (1%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M+ VCSV+ + + + K ++++D + + + E + Sbjct: 1 MAHVCSVVLVCRSLDIYYEKKHLNIIKDSLILMDEKLAFRIPHNCSWVRSLEIDECIVSN 60 Query: 61 YLQCTN--IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 YLQ Q + L P L+ + ++ E S +L FSCLS+F Sbjct: 61 YLQHIRHPAQYSGKHTRHRLLINHQPPLPLVRAIFDSFDAAETLTPTLSNMLYFSCLSLF 120 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 + + LL N + ++SGKV I+++ + W L+D+ + LY SESL+KKKL+ E T+F Sbjct: 121 SMHDELVPLLFNSINTLSGKVERIISVDTSRRWYLRDVAEKLYTSESLIKKKLQDENTSF 180 Query: 179 SQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 S+ILL +RM AK L+ + + IAE+CGY+STSYFI FR+++G +P + S Sbjct: 181 SKILLASRMARAKTLLELNQMPLTVIAEKCGYSSTSYFINTFRQYYGVTPHQYS 234 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 217 bits (552), Expect = 4e-55, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 118/236 (50%), Gaps = 2/236 (0%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M +CS+I + ++F I +D F G ++++ ++ F H + E T+ Sbjct: 1 MPYICSIILVLNSFGVRIGKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVND 60 Query: 61 YLQCTNIQTVTVP-VPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 + + + +V +L LL ++A LN + + + +CL++ + Sbjct: 61 FFKNYTLSPFSVRRFYPSYLIVECEDFSLLKNLVACLNCDSKTVDVVRNQISLACLAVLS 120 Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 + K + L + S+ KV+ I++ + W+L DI LY+SESLLK+KLK E +FS Sbjct: 121 SEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEGLSFS 180 Query: 180 QILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 +++L+ RM A+ L+ +V K+A CGY + SYF+ FR +FG P + + Sbjct: 181 KLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQYLSRF 236 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 213 bits (542), Expect = 5e-54, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 128/235 (54%), Gaps = 3/235 (1%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M+ VCSVI I +F+ + + + IL+++ + F + + E T+ Sbjct: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 Query: 61 YLQCTNI--QTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 YLQ + + + + L + P L+ + N N S +L SCLS+F Sbjct: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 + K I LL N + +VSGKV +++ A W L+DI + +Y SESL+KKKL+ E T F Sbjct: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 Query: 179 SQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 S+ILL +RM A+ L+ + ++ IAE+CGY+STSYFI FR+++G +P + ++ Sbjct: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 13/238 (5%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M VCSV+FI +F+ I + +F + +V + +R + + + T Sbjct: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 Query: 61 YLQCTNIQTVTVPVPAKFLRASN-------VPTGLLNEMIAYLNSEERNHHNFSELLLFS 113 + N + +P KF N P L+ + + + + E L S Sbjct: 61 FFIDVNNE-----LPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCIS 115 Query: 114 CLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 L++F + + + + + + K+ I++ W LKDI + +Y SESL+KK+L+ Sbjct: 116 LLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRD 175 Query: 174 EQTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 E T+F++IL D RM++AK LI S+N +A++CGY STSYFI AF+ ++G +P Sbjct: 176 EGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 >UniRef50_C6UPG2 Putative envelope protein encoded within prophage CP-933N n=34 Tax=Escherichia coli RepID=C6UPG2_ECO5T Length = 237 Score = 202 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 7/233 (3%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M +VCSVI + N + + G +++ +R F + K + + + Sbjct: 1 MVVVCSVIMVCSPINIFLEKDTLSLKPGSVVLATKCIRALFLMHYGKVKIFDINHSIVSQ 60 Query: 61 YLQCTNIQTVT--VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 YL+ + T T VP N P L E A + S+ + L+ +CLS+F Sbjct: 61 YLEIQHKLTRTHLTDVPLYLSLEPNNPA--LAE--ALITSQRFSGDTTDMFLMMACLSLF 116 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 + + + L+ + S+S KVR I+ + W L I L++SESLLK KLK E F Sbjct: 117 ESDERILLFLSGCLSSISAKVRAIIQTDISASWTLGAIALRLHMSESLLKIKLKNEGHMF 176 Query: 179 SQILLDARMQHAKNLIRVEGSVNK-IAEQCGYASTSYFIYAFRKHFGNSPKRV 230 S++LL+ RM+ A N++ + +AE+CGY+S SYFI F +++G P R Sbjct: 177 SRLLLEERMRVAVNMLCSRHGYGQAVAEKCGYSSWSYFISVFHRYYGFPPDRY 229 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 9/243 (3%) Query: 5 CSVIFIHHAFNANI-LDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQ 63 C V+ + + + + +++ + + + IK YL+ Sbjct: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 Query: 64 CTNIQTVTVPV------PAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSI 117 N +PV P L + + + +E + + LLF+ LS Sbjct: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 Query: 118 FAACKGFITLLTNGVLS-VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT 176 F K F++L+ + + VS V I+ W L + CL +S SLLKKKLK E T Sbjct: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENT 188 Query: 177 TFSQILLDARMQHAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 ++SQI+ RM++A N L+ +++++++ CGY STSYFI F+ +G +P ++R Sbjct: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 Query: 236 CQS 238 ++ Sbjct: 249 ERT 251 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 90/221 (40%), Gaps = 30/221 (13%) Query: 32 MVDNAVRTHFE--PYERHFKEIGFTENTIKKYLQCTNIQTVTVPV----------PAKFL 79 MVD + H+E + EIG + + + P P F Sbjct: 135 MVDTEQKLHYELERLFSQWAEIGPAIGHSRHWFSRVELNYKAPPYRAMYSEVLGDPVLFE 194 Query: 80 RASN---VPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVS 136 R N P LL++ +++ N ++L C ++ K + Sbjct: 195 REHNQLSFPADLLDQPLSFANEAA------AQLCEQQCAALLGELKR--------TDGIE 240 Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRV 196 G+VR I+ +P + ++ L + E L+++L E TT+ Q++L+ RM+ A + +R Sbjct: 241 GEVRRILANQPGKYPGIIEVARALAMGERTLRRRLADEDTTYKQVVLEFRMELAASYLRG 300 Query: 197 E-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 S+ +IA GYA S F F KH G +P + ++ Sbjct: 301 NAMSIQEIAYVTGYADPSNFHRTFNKHQGLTPNAYRRLHQA 341 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 70/249 (28%), Positives = 110/249 (44%), Gaps = 13/249 (5%) Query: 2 SLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKY 61 ++CS I+ + G ++ VD + Y T+ TI Sbjct: 24 VIICS---INETILTFNDGNKITIAPGNLIFVDPR-QLTITHYGELENVALITQKTISLL 79 Query: 62 LQCTNIQTV--TVPVPAKFLRASNVPTGLLNEMIAYLNSEER---NHHNFSELLLFSCLS 116 + N ++ + P + + A L+ + L+ + +S Sbjct: 80 VSALNSDSLIHSYKAHNSPFIIRKCPDIAIFKYAANLSHKSDLSCAEKLRKRSLMLALMS 139 Query: 117 IFAACKGFITLLTNGV-LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ 175 +F + FI LL + ++ +V ++N A+ W L I L +S SLLKKKL+ EQ Sbjct: 140 LFLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLMSPSLLKKKLQAEQ 199 Query: 176 TTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 TT+SQ+L + RMQ A L+R + +V K A CGY S SYFI FRKHFG +P + Sbjct: 200 TTYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRKHFGITPTEY--QD 257 Query: 235 RCQSHTGMN 243 + Q H +N Sbjct: 258 KRQHHHDLN 266 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 18/225 (8%) Query: 17 NILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVP- 75 D F+D + VD V + +T+ +L + + + Sbjct: 28 YFNGGDLVFADASQIQVDKCVENFVL----------VSRDTLSLFLPMLKEEALKLHAHK 77 Query: 76 --AKFLRASNVPTGLLNEMIAYLNSEERNHHN---FSELLLFSCLSIFAACKGFITLLTN 130 L + + +A L+ + + L+F+ LS+F FI LL N Sbjct: 78 KVPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEMLRKRALIFALLSVFLEDTQFIPLLLN 137 Query: 131 GVL-SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 + ++ +V ++N AH W L I L +S SLLKKKL++E T++SQ+L + RMQ Sbjct: 138 VLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEGTSYSQLLTECRMQR 197 Query: 190 AKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 A LI S+ ++A CGY S SYFIY FR ++G +P + Sbjct: 198 ALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQER 242 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 24/189 (12%) Query: 66 NIQTVTVPVPAKFLRAS-------NVPTGLLNEMIAYLNSEE--------------RNHH 104 N QTV +PVP + + VP+ L + L E R Sbjct: 76 NYQTVALPVPRQLFEDAYARMGSIAVPSRPLPASASSLPEEAAVLFDYCCQPGNLARLPG 135 Query: 105 NFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISE 164 ++ L ++ FA C + + ++R ++ PA W L +SE Sbjct: 136 AIAKARLMELVTWFALCGAVLG--EGQSPRLEDRLRQMIESDPAFDWTLAHAARSFNMSE 193 Query: 165 SLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHF 223 + L+++L E T FS+IL D RM A LI + ++A + GY S S F F++ F Sbjct: 194 ATLRRRLAAENTGFSEILSDTRMNRALGLIHTTTLPMAQVALEVGYDSPSQFSARFKERF 253 Query: 224 GNSPKRVSK 232 G SP+ V Sbjct: 254 GVSPRHVRS 262 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Query: 97 NSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDI 156 N E+ N ++ LLL S A G I+ + LSV KV N++ +P WKL D+ Sbjct: 160 NEEKENIATYALLLLLSGFIHDTAFAGIIS--RSAKLSVKYKVYNLLYTEPDKQWKLDDV 217 Query: 157 CDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYF 215 +++S S LK+KL E TTFS++ + ARM A L+R SV +A CGY S SYF Sbjct: 218 SSAIFMSASTLKRKLATEGTTFSELYITARMNLASKLLRTGKYSVTNVAVLCGYDSVSYF 277 Query: 216 IYAFRKHFGNSPKRVSK 232 I F++ F +P K Sbjct: 278 IACFKRQFNITPSAFMK 294 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 45/112 (40%), Positives = 71/112 (63%), Gaps = 1/112 (0%) Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQI 181 + + +L++ +++ +V NI++ P+ WKL D+ D +++S S LK+KL +E T+FS I Sbjct: 194 ESYEIILSSAQITLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDI 253 Query: 182 LLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 L ARM A L+R +VN +A +CGY STSYFI F+K+F +P K Sbjct: 254 YLSARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTFIK 305 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 101 RNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCL 160 R++ ++ + + T S+S ++R +++ PW LK+I + Sbjct: 99 RSNDELLDINSMLLYLLMHFEQSASQAETRSYSSLSSRIRALISKDLTKPWTLKEIAKLV 158 Query: 161 YISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAF 219 Y+SES +K+KL +E TTF+ +L AR+ A+ ++ + SV+ IAE CG+ SYF F Sbjct: 159 YMSESTVKRKLNKEGTTFTDVLQAARLDTAQKMVCNSDASVSAIAELCGFKHASYFGACF 218 Query: 220 RKHFGNSPKRVSKEYRCQSH 239 RK +G +P K+ + +++ Sbjct: 219 RKEYGATPLAYRKQAQLRAN 238 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 2/164 (1%) Query: 69 TVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLL 128 +T P L + ++ N ++ + E L+ LS F L Sbjct: 115 PLTKPTTKHLLAPIETGVARVFNLLHSSNKSQKLSQDKKEYLIRFLLSEFIYEPEAFALF 174 Query: 129 TN-GVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARM 187 +++ + NI+ + W LKDI D LY+S S LK+KLKQE T+FS++ L+ARM Sbjct: 175 RELSQNTLAENIYNIIISDISRKWALKDISDSLYMSCSTLKRKLKQEHTSFSEVYLNARM 234 Query: 188 QHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 A L+R E ++ ++A CGY S SYF F+KHF +P Sbjct: 235 NKATKLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTPSEF 278 >UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKU1_9GAMM Length = 348 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 12/220 (5%) Query: 32 MVDNAVRTHFEP--YERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKF--LRASNVPTG 87 +V+ + H+E + EIG +++ ++ + + + N+ Sbjct: 136 LVNTPAKLHYETERLLAQWAEIGPAFGESRQWYSRIDLDYPAPEYISLYEEVLGPNLHFE 195 Query: 88 LLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKP 147 + I + +F+ + A + V +G+VR ++ P Sbjct: 196 KAHTQIVFPRVLLELPLSFANEQAAALCEQQCAA---LLGQMQAVQGFTGQVRRLLANAP 252 Query: 148 AHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQ 206 H ++D L +SE L+++L +E TT+ +++LD RM+ A + +R E ++ ++A Sbjct: 253 GHHPSIEDAAGKLAMSERSLRRRLSEEGTTYKEVVLDFRMELASSYLRGREMTIQEVAFL 312 Query: 207 CGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGN 246 GYA S F F +++G +P E+R T TG Sbjct: 313 AGYADASNFHRTFSRYYGATPG----EFRAGEQTAAPTGP 348 >UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SDH6_HAHCH Length = 351 Score = 129 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 83/192 (43%), Gaps = 4/192 (2%) Query: 60 KYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 + L+ I+ P + +A N P A + +E + I + Sbjct: 161 RLLKEVEIEFEAPPYAQHYQQAFNCPVKFGRSRNALIFRKEALLLPSIYANPATHSEIVS 220 Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKP-AHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 C +T L G S++ +V+ I+ L + L +SE L+++LK+E F Sbjct: 221 ICNRELTTLV-GATSLTERVKQIITPMLQGREVGLTETAKQLGLSEWTLQRRLKKEGVQF 279 Query: 179 SQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 Q+L + R Q A+ ++ + ++ +IA G++S + F AF++ FG +PK ++ Sbjct: 280 QQVLDETRKQIAETYLKATDLTIGEIAYLLGFSSPAAFHRAFKRWFGVNPKPFKDQH-AS 338 Query: 238 SHTGMNTGNTMN 249 T NT N Sbjct: 339 GRTDENTATGEN 350 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 3/135 (2%) Query: 99 EERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICD 158 + R L+ A + +S ++R ++ A W++ D+ Sbjct: 130 QTRLPETVLAARTMELLAWLAQAGAVFN--PHSAQRLSKQIRQLIAQDMAASWQIADVAQ 187 Query: 159 CLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIY 217 L +SE+ L+++L E +F ++L + +M A L++ V ++A GY S + F Sbjct: 188 RLGMSEATLRRRLANEGASFRELLGNIKMMRALTLLQTSPLGVAQVAYAVGYESPARFAA 247 Query: 218 AFRKHFGNSPKRVSK 232 FR HFG +P V K Sbjct: 248 KFRAHFGCTPSDVRK 262 >UniRef50_A7ZGX7 Transcriptional regulator, AraC family n=1 Tax=Escherichia coli E24377A RepID=A7ZGX7_ECO24 Length = 209 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 7/198 (3%) Query: 45 ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLR--ASNVPTGLLNEMIAYLNSEERN 102 E+ + EN ++ I + + R + + T +++M+ + E + Sbjct: 10 EKPYVAFRLNENVLRHLKNTLMIIYGMSKIDSCECRGVSRKIMTTEVDKMLLDVLKEMKG 69 Query: 103 HHN----FSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICD 158 HHN F L++ I K +L + + + KVR ++ + W L I D Sbjct: 70 HHNDDSSFISALIYLISKIKCNDKIIESLYMSSITFFTDKVRGVIEKDLSRKWTLAIIAD 129 Query: 159 CLYISESLLKKKLKQEQTTFSQILLDARMQH-AKNLIRVEGSVNKIAEQCGYASTSYFIY 217 +SE ++K+L+ E T F+QIL+ +RM A L+ +++I+ G +S SYFI Sbjct: 130 VFNVSEITIRKRLESEDTNFNQILMQSRMSKAALLLLENSYQISQISNMIGISSASYFIR 189 Query: 218 AFRKHFGNSPKRVSKEYR 235 F KHFG +PK+ ++ Sbjct: 190 IFNKHFGVTPKQFFNYFK 207 >UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU19_9GAMM Length = 335 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 53/100 (53%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI 194 +VR + + + L+++ L++S LK++LK+ + +IL +AR++ A L+ Sbjct: 231 WVRQVRRAMVKQEGGYYSLEEVAAVLHLSVRTLKRRLKEHGANYHRILKEARLERAVALL 290 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 + +V +A Q GY + F AFR+ G SP +++ Sbjct: 291 KEGETVQTVAFQLGYQDPANFTRAFRRWTGCSPSDYRQQW 330 >UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A3JHC0_9ALTE Length = 342 Score = 126 bits (317), Expect = 6e-28, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA-KN 192 ++S +V N + P L D+ L +S L +KLK E T++ +L R + A Sbjct: 239 ALSQQVSNCLLNSPDGYPSLDDVASRLAMSRRTLIRKLKTEGTSYQDLLDGVRQELAAWY 298 Query: 193 LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 L+ +V +IAE+ GY TS F FR+ FG +P + Sbjct: 299 LLETTVAVEQIAERLGYQDTSNFSRTFRRWFGMTPHAMRS 338 >UniRef50_C3K2A2 Putative putative AraC-family regulatory protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K2A2_PSEFS Length = 384 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 8/175 (4%) Query: 62 LQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC 121 L + P+P P+ A NS N S L + + C Sbjct: 208 LSRFCLSKQPPPIPDNVKVLGCAPS-----YAANSNSLAFNRSFLSLPLPQANAVTVSMC 262 Query: 122 KGFITLLTNGVLS---VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 + T L ++ ++ V++ +N L I + L++S LK++LK+E TTF Sbjct: 263 EQMCTQLMQRRIAHAGMTALVQHYLNTPDNGMPDLSSISELLHVSPRTLKRRLKEEGTTF 322 Query: 179 SQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 ++L D R ++A NL++ ++ +IAE+ G++ S F AF++ G SP + S++ Sbjct: 323 RKLLADVRSRNAINLLKDGHNLTEIAERLGFSDLSSFSQAFKRWHGISPSQFSQQ 377 >UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S8T9_HAHCH Length = 278 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 8/131 (6%) Query: 102 NHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLY 161 H ELL + A G++ +N + KVR ++ +P W +DI + L Sbjct: 145 AEHRVCELLQW------LANAGYV-FRSNERADIQRKVRLLIGAEPDKKWSSQDIAESLA 197 Query: 162 ISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFR 220 +SE+ L++KL +E FS+IL+D RM A +L++ + ++ IA Q GY S S F F+ Sbjct: 198 LSEATLRRKLAKEGNAFSEILVDVRMSLALSLLQSTDAAIASIAYQVGYESASRFSVRFK 257 Query: 221 KHFGNSPKRVS 231 + FG SP + Sbjct: 258 QRFGFSPTAIR 268 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 92/240 (38%), Gaps = 7/240 (2%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTN 66 +I + L + A GE ++ + F + I L+ Sbjct: 42 LIIVLRGAKVLSLQPELACRSGEFILAPAGIELQFMNLPEG-EYIAVVIGFCASDLEAIP 100 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 + A R LN+ I +++ L L+ +G+ + Sbjct: 101 VSAPPDRDGAAIARVDRTLAEFLNQWINWIDV----SPPELWALRRKELAHLLYARGYGS 156 Query: 127 LLTNGV-LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDA 185 LL + S KV ++ +PA W L +I L +SES L+++L+ E F +L Sbjct: 157 LLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLLAVSESTLRRRLQSENAGFRDLLESV 216 Query: 186 RMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNT 244 R+ +L + + IA+QCGY S S F F++ FG +P + + + G+ T Sbjct: 217 RLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERFKQRFGMTPSELRQTRLEELGEGILT 276 >UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2HZ04_ACIBC Length = 341 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 68/115 (59%), Gaps = 2/115 (1%) Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 C+ ++ L ++ +VR+I++ H ++++ + L++S+ LK++L E T+FS Sbjct: 225 QCEAELSALGERR-RLAMRVRDILSNSEQHYLSIENVAEYLHMSDRTLKRQLAAEGTSFS 283 Query: 180 QILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 ++ + R +HA +L+ R + S+ +IA++ GY+ + F AF++ G SP K+ Sbjct: 284 TLVDEVRYRHATSLLSRTDYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRKD 338 >UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonella enterica RepID=SIRC_SALTI Length = 295 Score = 124 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 95/242 (39%), Gaps = 22/242 (9%) Query: 10 IHHAFNANILDKDYAF----SDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCT 65 I + F I D I + + + H + + K + Sbjct: 53 IENEFGEFIEQSALCLFLLEKDQTITLSMSEIEGHIDFSSLEVS-YDLMQKFYKVFYSTR 111 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEER-------------NHHNFSELLLF 112 N + + K LL M +S + H++S L Sbjct: 112 NYNDRELSLKTKP--KYFFHADLLPGMSDTFDSILHGVACPRVCSNVSIDDHDYSYFSLM 169 Query: 113 SCLSIFAACKGFITLLTNGV-LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL 171 +S F G L + ++ KV NI+ W ++ L++S S LK+KL Sbjct: 170 YLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKLFMSVSSLKRKL 229 Query: 172 KQEQTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 E+ +FS+I LDARM A L+R+ G+++++A CGY + SYFI F++HF +P Sbjct: 230 AAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPLSF 289 Query: 231 SK 232 + Sbjct: 290 MR 291 >UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein n=3 Tax=Yersinia RepID=C4T4E3_YERIN Length = 269 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 1/161 (0%) Query: 72 VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNG 131 P PA L L LN + + L LL + Sbjct: 103 TPAPAPSLCVPLDIHTRLAWDSLLLNVKGHAPDALLQHAAMGVLLALYLAGQAGVLLIDR 162 Query: 132 VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAK 191 + +V+ ++ + PA W + D+ L+I +S L++KL QE +F IL + RM A Sbjct: 163 RDKWAEQVQQVLLLDPARNWSVSDVARSLHIGDSTLRRKLMQEDRSFRMILEEVRMGCAL 222 Query: 192 NLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 + ++ S+ +IA Q GY S S F F++HFG +P+R+ Sbjct: 223 HALQTTSLSIGEIAAQHGYISPSRFTSRFQQHFGLTPRRLR 263 >UniRef50_P43460 HTH-type transcriptional activator csvR n=12 Tax=Escherichia RepID=CSVR_ECOLX Length = 301 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 12/225 (5%) Query: 14 FNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE-----IGFTENTIKKYLQCTNIQ 68 + + + + ++ ++ V ++ E EN ++ I Sbjct: 32 LDISFGEDKITCFNNRLVFLERGVNISVRIQKQKLTEKPYVAFRLNENVLRHLKNTLMII 91 Query: 69 TVTVPVPAKFLR--ASNVPTGLLNEMIAYLNSEERNHHN----FSELLLFSCLSIFAACK 122 + + R + + T +++M+ + E HHN F L++ I K Sbjct: 92 YGMSKIDSCECRGVSRKIMTTEVDKMLLNVLREMMGHHNDDSSFISALIYLISKIKCNDK 151 Query: 123 GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQIL 182 +L + + + KVR ++ + W L I D +SE ++K+L+ E T F+QIL Sbjct: 152 IIESLYMSSITFFTDKVRGVIEKDLSRKWTLAIIADVFNVSEITIRKRLESEDTNFNQIL 211 Query: 183 LDARMQH-AKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNS 226 + +RM A L+ +++I+ G +S SYFI F KHFG + Sbjct: 212 MQSRMSKAALLLLENSYQISQISNMIGISSASYFIRIFNKHFGVT 256 >UniRef50_A4TFK9 Transcriptional regulator, AraC family n=11 Tax=Actinomycetales RepID=A4TFK9_MYCGI Length = 346 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 9/154 (5%) Query: 83 NVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNI 142 + P L+ + LN R + L + L + +G S S KVR + Sbjct: 201 DAPMSYLHVPVNALNEVCRFSDPLAYRLAVAELRRTLDEQ-------SGATSFSKKVRRL 253 Query: 143 VNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE-GSVN 201 ++ P + + D L +S S LK++L +E TTF ++ + A L+ S + Sbjct: 254 LDEDPGQR-SCQRVADELSVSTSTLKRRLAEEGTTFRELRQSCLRESAMMLLITRSMSAS 312 Query: 202 KIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 +IA + GY + F +AF++ G SP + R Sbjct: 313 QIATELGYGDLANFSHAFKRWTGRSPSEYRRSQR 346 >UniRef50_D0LYU6 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYU6_HALO1 Length = 362 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 1/102 (0%) Query: 131 GVLSVSGKVRNIV-NMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 V +VR+IV P P L+ + + L +S L+++L+ E T+ ++L R + Sbjct: 258 PAPGVVEQVRDIVGTALPEGPLALEAVAERLRMSARTLQRRLRAENTSLHRVLEQLRRER 317 Query: 190 AKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 A + + ++ +IA GY+ S F AF++ G +P+ Sbjct: 318 ALSFLGTPMAIGEIAYLLGYSEPSAFHRAFKRWTGTTPEAFR 359 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 12/225 (5%) Query: 16 ANILDKDYAFSDGEILMVDNAVRTHFE--PYERHFKEIGFTENTIKKY----LQCTNIQT 69 + F L++ R F P++ F+ + L N T Sbjct: 39 FQWHGRWIRFHKKNWLLIPAHSRITFVNNPHQTQFRSTQISFLIPPTAEMIQLSQQNADT 98 Query: 70 VTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLL- 128 V+ + + + L +++ + L + L + A KG + LL Sbjct: 99 VSNHLDSPEFIVDDEGRYLWQLLLSMPKELSQAIQQQ----LVNGLYQYLAEKGQLHLLY 154 Query: 129 TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQ 188 +S + K+ + P+ + ++ +C +S++ L ++L E T F ++L RM Sbjct: 155 APQEISWTEKLTQFFSQDPSQNYTIEQVCQQFGLSKATLMRRLNDESTQFREVLAQVRMG 214 Query: 189 HAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 HA +L++ +V ++A+QCGY S F F+K FG SPK+ K Sbjct: 215 HALSLLQEKSQTVLELAQQCGYQSEVRFTQRFQKQFGLSPKQYQK 259 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 3/159 (1%) Query: 80 RASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKV 139 R VPT L + + E + + F EL ++ S+F I+ + Sbjct: 381 RTVGVPTEQLENLYIDAHVEVQRYATFRELSGWAR-SVFHQIMDRISARRPQYGEAVERA 439 Query: 140 RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVE 197 + + A L+DI D +++S + + + K+E +++ L+ RM+ AK L+ R Sbjct: 440 CEYITLHYAEDLMLQDIADHVHLSRTYISELFKKETGMNYNEYLMQVRMEKAKELLKRQT 499 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 V A GY++TSYFI F+ + G SP ++ R Sbjct: 500 LKVADAAALVGYSNTSYFIKLFKNYTGLSPSEYMEQQRS 538 >UniRef50_C6LLK3 Putative two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLK3_9FIRM Length = 531 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 10/154 (6%) Query: 83 NVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNI 142 N G L+ ++A L E F E ++ +C SI + + S+ K R+ Sbjct: 384 NSRRGYLDTVMA-LEDYEDIRTWFLEKMMQTCCSIRDKNE-------DRSESLVEKARSY 435 Query: 143 VNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRV-EGSV 200 + + L D+ + +S K K+E F++ L + R+ AK L+ E S+ Sbjct: 436 MQENYSREISLDDVSKEVNVSPYYFSKIFKEESGENFTEYLTNIRIGKAKELLENPELSI 495 Query: 201 NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 +I GY +YF F+KH G +P+ + Y Sbjct: 496 KEIGVMSGYTDPNYFSRIFKKHTGITPREYRERY 529 >UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GLT9_9BURK Length = 329 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 113 SCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 L +F + L V V+G+VR I+ L+D+ L IS L+++L Sbjct: 208 HLLRVF-EDQCARQLRQRQVEGVTGQVRRILLGPMGLLSTLEDVARSLSISPRSLRRRLA 266 Query: 173 QEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +E +FS +L R Q A+ L+ + ++++A GY T+ F AFR+ + SP + Sbjct: 267 EEGVSFSDLLDAERQQLAEQLLSTQMKLDEMALHLGYGDTASFTRAFRRWYNCSPGEYRR 326 >UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VN05_ALCBS Length = 342 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 124 FITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILL 183 F T ++ ++R+ + PA L+ + + L +S LK+ L+Q ++ Q+ Sbjct: 231 FRQWRTEDEGVMARRIRSALQDHPAPLPSLQGMAERLAVSARTLKRHLQQAGLSYRQLQD 290 Query: 184 DARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + R Q A+ L+ + E S++++A + GY + F AF++ G +P ++ Sbjct: 291 EERYQQARRLLVQSENSISEVAYRLGYNDVANFSKAFKRWSGMTPSAYREK 341 >UniRef50_A2PNS5 Transcriptional regulator, AraC family protein n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PNS5_VIBCH Length = 267 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 5/128 (3%) Query: 107 SELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESL 166 S +L+ + +F +CK + + +S KV + P W L + LY+SES Sbjct: 140 SNILVSLLIEVFKSCKK---TQQSPIGVISRKVLEKIIECPYERWSLSMMAKELYMSEST 196 Query: 167 LKKKLKQEQTTFSQILLDARMQHAKNLIRV--EGSVNKIAEQCGYASTSYFIYAFRKHFG 224 LK+KLK E TF+++ ARM HAK L+ + + +AE CG+ SYF+ F+K+FG Sbjct: 197 LKRKLKSEDQTFTELYNFARMSHAKKLLLSNRDIKIATVAEMCGFNHVSYFVSCFKKYFG 256 Query: 225 NSPKRVSK 232 SP K Sbjct: 257 LSPLVYKK 264 >UniRef50_C9RVZ3 Two component transcriptional regulator, AraC family n=4 Tax=Geobacillus RepID=C9RVZ3_GEOSY Length = 513 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI- 194 GK ++ ++ A P L+++ + IS K K+ TF + + R++ AK + Sbjct: 411 GKAKDYIDRHYAEPLTLEEVAEQAGISPYYFSKLFKEHFGITFIDYVTNVRIERAKEALA 470 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 + S+ +I GY +YF F+K G SP K+ + + Sbjct: 471 ETDQSLKEICFSVGYNDPNYFSRVFKKQTGLSPSEYRKKVQAR 513 >UniRef50_Q47ZJ7 Transcriptional regulator, araC family n=2 Tax=Alteromonadales RepID=Q47ZJ7_COLP3 Length = 317 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 21/186 (11%) Query: 56 NTIKKYLQCTNIQT-----VTVP-VPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSEL 109 + + +Q +NIQ+ +TV + A+ +R +N +++ + L + Sbjct: 140 SALPSIIQLSNIQSNDNIWMTVKLIDAEIIRTNNKKNSIIDRLTEVLFIQ---------- 189 Query: 110 LLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKK 169 LL S + GF++ L L+ K+ +++ P W L I D + +S + L++ Sbjct: 190 LLNSFIEKNEHLTGFLSALKEPRLN---KILQLIHQHPERQWTLDIISDVVGMSRATLQR 246 Query: 170 KLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 K K + + RM A L++ S+ IA+ G++ +AF+ H+G++P Sbjct: 247 KFKAAIGVSPMVYISRWRMAKAYQLLKHSNLSLEGIADVIGFSDARTLSHAFKDHYGDTP 306 Query: 228 KRVSKE 233 + K+ Sbjct: 307 SQFRKK 312 >UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=Enterobacteriaceae RepID=B5XZ22_KLEP3 Length = 287 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 3/195 (1%) Query: 45 ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHH 104 I F + ++ LQ N + +TV + LR L + + L + + Sbjct: 84 PCLLLSILFDKQRLECSLQHWNGKAITVVEKRQALRRGPRVGSFLLQALNELRMQPQ-EQ 142 Query: 105 NFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISE 164 + ++ S LS G ++ ++ +R ++ A P + + Y+S Sbjct: 143 RTARSIVVSLLSHCHDLLGSQAQTSSRSQALFEAIRQYMDAHYAEPLSRESVAQAFYLSP 202 Query: 165 SLLKKKLKQEQ-TTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKH 222 + L ++ F++ L R++ A+ L++ + V IA CG+A ++YF FRK Sbjct: 203 NYLSHLFQKCGPMGFNEYLNHIRLEQARMLLKGHDMKVKDIAHACGFADSNYFCRLFRKT 262 Query: 223 FGNSPKRVSKEYRCQ 237 SP ++Y Q Sbjct: 263 TERSPSEYRRQYHSQ 277 >UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=Proteobacteria RepID=Q0B4N6_BURCM Length = 373 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 2/105 (1%) Query: 130 NGVLSVSGKVRNIVNMKPAH-PWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQ 188 + S VR + P + P+ L DI + S LK++L++E TTF +L AR Sbjct: 257 RARVGTSEMVRQYLTATPGNVPFSLDDIARLMNTSPRTLKRRLQEEGTTFRTLLAQARGA 316 Query: 189 HAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 A+ L+ S+ ++AE+ G++ S F AF++ +G P Sbjct: 317 MAETLLGDAHLSLTEVAERLGFSDLSSFSQAFKRWYGVPPGTYRS 361 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 7/159 (4%) Query: 97 NSEERNHHNFSELLLFSCLSIFAACKGFITLL-TNGVLSVSGKVRNIVNMKPAHPWKLKD 155 S + + L F ++I+ + L N + + +++ +P W L D Sbjct: 130 QSASQEALLMKQSLYFILMAIYQEGIDILNLFRFNYDEPKNQAITHLITQEPQKKWHLDD 189 Query: 156 ICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSY 214 + L+ + S L++ L +E +F Q+LLD RM A N + SV +I+ +CG+ S +Y Sbjct: 190 VAKALFTTPSTLRRHLNREGVSFRQLLLDVRMGMALNYLTFSNYSVFQISHRCGFGSNAY 249 Query: 215 FIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALAI 253 F F++ + +P + + R N N + L++ Sbjct: 250 FCDVFKRKYNMTPSQFRLQSR-----QSNDPNFITNLSL 283 >UniRef50_Q6FBV2 Putative transcriptional regulator (AraC family) n=3 Tax=Acinetobacter RepID=Q6FBV2_ACIAD Length = 347 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 140 RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA-KNLIRVEG 198 R+++ P+ +LK + L++SE+ L+++LK E ++ + + R A + LI + Sbjct: 242 RHLIRHHPSEWPELKQLSHELHMSEATLQRRLKAENMSYQALKNEIRCDIAIEQLINTKH 301 Query: 199 SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 ++N+I+E + S F AF+K G SP K Y Sbjct: 302 TLNEISEALDFHDPSAFHRAFKKWMGMSPSAYRKAY 337 >UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3Z2_9GAMM Length = 343 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 131 GVLSVSGKVR-NIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 ++GKVR +++ + I L++S L+++LK E T++ +++ RMQ Sbjct: 228 RTGDIAGKVRWQLLDALDKELPSEEAIAQALHMSPRTLQRRLKAENTSYGEVVQQTRMQL 287 Query: 190 AKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 A+ L+ + S ++ CG++ S F AF++ G +P Sbjct: 288 AQQLLASPDISATEVGLACGFSDASAFTRAFKRWTGTTPSDYRS 331 >UniRef50_UPI0001C3522D two-component system, response regulator YesN n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3522D Length = 495 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 11/159 (6%) Query: 86 TGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA----CKGFITLLTN-----GVLSVS 136 T L+ E+I YL +++ N ++S +I C LL+ G S Sbjct: 334 TELMKEIIHYLPDDQKPDLNKVAEKIYSSANIVELMDMTCSQAKKLLSQTQKNQGSCLKS 393 Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI- 194 K+R + P L DI YIS + L K+E + + + R++ A L+ Sbjct: 394 DKIRQYIYQNYTQPLSLNDISSHFYISPNYLCSVFKKETGCNLMKFINEYRLEQAAKLLL 453 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 E VNKIAE G+++ SYF FR ++G SP+ ++ Sbjct: 454 ETEMKVNKIAETVGFSNPSYFSQRFRDYYGESPENYRQK 492 >UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TWU6_MARAV Length = 347 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 1/98 (1%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI 194 + +VR ++ P KL + LY+SE LK++L++E+ +F ++ R++ A++L+ Sbjct: 240 FACRVRRVIETSHPFPPKLARVASTLYVSERTLKRRLQEEEASFQALVDQVRLERARDLL 299 Query: 195 -RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 ++++IA+ GYA + F AF++ G SP Sbjct: 300 ASTTMNLSQIADSLGYADAANFTRAFKRWTGLSPSHFR 337 >UniRef50_C9NYS3 Transcriptional regulator AraC family n=9 Tax=Vibrionales RepID=C9NYS3_9VIBR Length = 349 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 2/137 (1%) Query: 98 SEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDIC 157 + H+ + +C + +++ ++ K+ I +P ++ + Sbjct: 204 DASQLHNPLPSANAMTLQMCLKSCDEMLAKVSS-TPNLKEKITQIFIERPGRYPSIEALS 262 Query: 158 DCLYISESLLKKKLKQEQTTFSQILLDARMQHAK-NLIRVEGSVNKIAEQCGYASTSYFI 216 L +S L++ LK EQT + QIL R AK L+ ++ +I+E+ G++ ++ F Sbjct: 263 SELGMSSRTLRRHLKAEQTGYQQILDHVRFHLAKYYLVSTGLNIEEISERVGFSDSANFR 322 Query: 217 YAFRKHFGNSPKRVSKE 233 +AFRK G SPK + Sbjct: 323 HAFRKWNGCSPKAFRNQ 339 >UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZQH8_9SPHI Length = 355 Score = 120 bits (301), Expect = 4e-26, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 2/110 (1%) Query: 127 LLTNGVLSVSGKVRNIVNMKP-AHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDA 185 LLT KVR ++ +P H L + L+++ L++KLK E TF I D Sbjct: 243 LLTKKPQEWVKKVRQVILNQPINHLPSLHQVAHALHLTPRSLQRKLKHEGHTFLVIANDI 302 Query: 186 RMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 + Q A +L+R + +V+++A GYA S F AF++ G +PK + + Sbjct: 303 QQQRAMHLLRQTQLNVSEVAYMLGYAEPSVFRRAFKRWTGKTPKEYQQSF 352 >UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 Tax=Enterobacteriaceae RepID=D2TIS0_CITRO Length = 276 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 86/162 (53%), Gaps = 18/162 (11%) Query: 77 KFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVS 136 K L SNVP L I YL S+ N E L++ +L + + + Sbjct: 131 KRLTGSNVPQHRLVYKITYLLSKV----NDIESLVY-------------SLSVSTDTTFT 173 Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRV 196 K++ I+ + W+L D+ + L++SE ++KKL++E F+ ++LD RM HA LI Sbjct: 174 EKLKVIIEADLSRSWRLVDLANILHMSEVSIRKKLEKESNNFNALVLDIRMYHAAKLITT 233 Query: 197 -EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 + +N IA + GY STSYFI F++ FG +PK+ S + + Q Sbjct: 234 SDKHINSIANEVGYTSTSYFIRNFKEFFGITPKQFSLKVKKQ 275 >UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 Tax=Enterobacteriaceae RepID=A6T768_KLEP7 Length = 262 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 3/179 (1%) Query: 56 NTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFS--ELLLFS 113 + + L + ++ P P + T L M + R + + + Sbjct: 84 SLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQSVLQAVREGLSVALQQHQTMG 143 Query: 114 CLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 L LL +S +VR ++ + PA W + + L++ ES L+++L+Q Sbjct: 144 LLLALYEAGYAGPLLVERQQDLSAQVRQLIMLSPAQAWSVSRVAKMLFLGESTLRRRLQQ 203 Query: 174 EQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 E +F QI+ + RM HA ++ + +IA+ GY S S F FR+H+G PK V Sbjct: 204 ESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGYQSGSRFTARFRQHYGLLPKHVR 262 >UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=Burkholderiaceae RepID=B1YT91_BURA4 Length = 247 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 16/174 (9%) Query: 59 KKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 + + + A R LL+E I N++ + ++ Sbjct: 89 PPWFERYRARLPRCHFNASANRIRC-DAALLDEPIGTANAQ-------TAQMIVQQCEAE 140 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 A G+ S+ +VRN++ A + D+ L++S LK+KL + T+ Sbjct: 141 LARLGY-------AESIVERVRNLLICGDAGYPSVDDVARELHVSARTLKRKLAEFGATY 193 Query: 179 SQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 S +L + R++ A L+ V++IA + GY + F AF++ G +P Sbjct: 194 STLLDEIRLRDALRLLEGTRLPVDEIAARVGYTDRANFTRAFKRWTGVAPSERR 247 >UniRef50_B5R1L9 Fimbrial operon positive regulatory protein n=11 Tax=Salmonella enterica subsp. enterica RepID=B5R1L9_SALEP Length = 271 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 106/231 (45%), Gaps = 18/231 (7%) Query: 21 KDYAFSDGEILMVDNAVRTHFEP-YERHFKEIGF----TE--NTIKKYLQCTNIQTVTVP 73 ++ + G I +++ + E Y + E + + + +N P Sbjct: 33 EEIKITRGNIALIEKNIEAVVEIEYMDDIESFDIITLPDELLSRVLCLFEASNCSESLSP 92 Query: 74 VPAK------FLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITL 127 + + F+ N G+L E YL + N+++ E+ + + + +L Sbjct: 93 IRYRTFSDKVFIITDNGINGILFE---YLKKRKNNNNDIYEIACL-FSKVNNIEQLYTSL 148 Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARM 187 + S S VR ++ + W+LK + + L +SE ++KKL+ E T F +ILLDARM Sbjct: 149 CISVSRSFSDIVRKTIDNDISTKWRLKTLSEKLNLSEVTIRKKLENENTNFYRILLDARM 208 Query: 188 QHAKNL-IRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 Q A L + + +NK++ G +S SYFI F ++G +PK+ +Y+ + Sbjct: 209 QKAARLVLDSDTHINKVSYAVGMSSVSYFIKLFSDYYGLTPKQFHLKYKHR 259 >UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21JI5_SACD2 Length = 344 Score = 119 bits (300), Expect = 6e-26, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 73/191 (38%), Gaps = 10/191 (5%) Query: 43 PYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERN 102 + + T+ + V K + G++ + +N Sbjct: 160 RFAEWLVASDLPIKHVLVTYDNTHTEESLVYTEVKSILFEQPYNGIVYDTACLDLPVVQN 219 Query: 103 HHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHP-WKLKDICDCLY 161 N L + + I + KVRNI+ + ++ L+ Sbjct: 220 EENLLNFLRTAPYHLVTEDPAHI--------RFADKVRNILKKDVSASMPSSDEVASQLH 271 Query: 162 ISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFR 220 +S + L++KL+ + T++ ++ + RM+ A +L+ + S N+IA++ G+ S F +F+ Sbjct: 272 MSTTTLRRKLQNDNTSYQRLKDECRMEAAFHLLNCADLSNNEIAQKLGFDEPSAFFRSFK 331 Query: 221 KHFGNSPKRVS 231 K G +P Sbjct: 332 KWTGQTPGEYR 342 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 119 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 1/100 (1%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VE 197 + ++ P W + D+ L+ ++S L++ L +E +FSQ+LLD RM A N + Sbjct: 172 IARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSN 231 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 S+++I+ + G+ S +YF AF++ +G +P + R + Sbjct: 232 YSISQISNRSGFGSAAYFCDAFKRKYGITPSQFRTTSRQE 271 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 3/106 (2%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VE 197 + ++ P W + D+ L+ ++S L++ L +E +FSQ+LLD RM A N + Sbjct: 202 IARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSN 261 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMN 243 S+++I + G+ S +YF AF++ +G +P + R H M+ Sbjct: 262 YSISQIGHRSGFGSAAYFCDAFKRKYGITPSQFRATSRE--HNDMS 305 >UniRef50_A6GTF5 Transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GTF5_9BURK Length = 342 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Query: 127 LLTNGVLS-VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDA 185 LL S + +V ++ P W + + ++S L + L+ EQT++ + Sbjct: 230 LLEQRRPSNWAARVTELLRSNPGQIWTCEQVASHFHLSSRTLMRYLRDEQTSYQTLRDSE 289 Query: 186 RMQHAK-NLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 + AK +L+ +V +A GY S F AF++ FG SP+ ++ R Sbjct: 290 LARQAKLSLLVSNNTVESVALSLGYQEVSNFRRAFKRWFGMSPQAFIEQSR 340 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 10/166 (6%) Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 +Q + P L+A +++ + +L LF L+ A ++ Sbjct: 107 VQELAKIQPLAPLKAHF-------DVVRQALENDEAPELVLKLKLFELLAWLKAE--HLS 157 Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDAR 186 + + ++ ++R ++ A W + I L++SE+ L++ L++ TTF ++L D R Sbjct: 158 FVPHEKHNLLRQIRKMIASNTAFEWTAETIARQLHLSETSLRRALQKSDTTFREVLTDVR 217 Query: 187 MQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 M A L++ + V +IA + GY S S F F++ FG P + Sbjct: 218 MSRALTLLQITKWQVARIANEVGYDSPSRFTVRFKQRFGFLPSDIR 263 >UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=Bacteria RepID=A4XWL1_PSEMY Length = 364 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 1/106 (0%) Query: 129 TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQ 188 +G S+ ++R ++ L+ + L+ S L++ L++E T+F ++ R Sbjct: 257 PDGGDSLISQIRRLLGRDCRTWPDLEQVAQQLHTSPQTLRRHLREEGTSFQELKDHLRRD 316 Query: 189 HAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 A + R E +++ IAEQ G++ S F AF+K G +P + Sbjct: 317 LAIYHLGRDELAIHDIAEQLGFSEPSAFHRAFKKWTGLTPGAYRAQ 362 >UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Escherichia coli RepID=Q8GA34_ECOLX Length = 271 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 1/128 (0%) Query: 110 LLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKK 169 L + + A I+L+ + ++ + K+RN + P+ W L I D ISE ++K Sbjct: 144 LSYLISRMGIAPDIIISLMASTAVTFTEKIRNQIENNPSKRWCLNMIADEFNISEISVRK 203 Query: 170 KLKQEQTTFSQILLDARMQHAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 +L+ E T+FS + L RM+ + L++ E + +I++ G+ STSYFI F+ +FG +PK Sbjct: 204 RLESEGTSFSNLFLKVRMEKSMQLLLQNELQICQISKSVGFRSTSYFIKIFKDYFGITPK 263 Query: 229 RVSKEYRC 236 ++ +R Sbjct: 264 QLIIYFRN 271 >UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n=2 Tax=Edwardsiella RepID=C5BFY6_EDWI9 Length = 266 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDAR 186 LL ++ +++ ++ + PA+ W+ DI L+++ES L+++L E F IL D R Sbjct: 156 LLNERHDRLTEQIQQLLLLDPAYAWQATDIAQRLHMAESTLRRRLNAEGKRFRDILDDVR 215 Query: 187 MQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 + A ++ + IA Q GYAS S F F + +G +P + + R Sbjct: 216 LGQALLALQSGNTPIGDIASQSGYASPSRFTARFVRRYGLTPSALRQAMRR 266 >UniRef50_A6GTF7 Putative transcriptional regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GTF7_9BURK Length = 340 Score = 118 bits (297), Expect = 1e-25, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 2/123 (1%) Query: 113 SCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 + + C + L G +++ +VR + H L+ + ++E + L+ Sbjct: 217 ALQRLLRDCDLQLQRLQAG-GTLAQRVRMQLQQSEGHMPTLQAMAAKENLTERTFMRHLQ 275 Query: 173 QEQTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 E T+F Q+L + R + A ++ + +V IA GY S F F++ G +PK Sbjct: 276 AEGTSFQQLLDEVRQERACWMLAHTDSTVEAIAYALGYEDASNFSRTFKRWCGQTPKDYR 335 Query: 232 KEY 234 ++ Sbjct: 336 HQH 338 >UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX05_9GAMM Length = 335 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 8/139 (5%) Query: 100 ERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHP-WKLKDICD 158 H+ E L + + ++S +V+ ++ + + I Sbjct: 202 VHTQHSLREFLRTAPYQMLIMEN------DPAGNNLSAQVKAMIGHDFSEGFPSFEMISS 255 Query: 159 CLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIY 217 L +S L+++LK+E TTF QI D+R + AK + R + S+N++A Q G+ S F Sbjct: 256 ALSMSAPTLRRRLKREGTTFQQIKDDSRCEAAKLCLNRHDLSINEVAMQMGFTDPSAFHR 315 Query: 218 AFRKHFGNSPKRVSKEYRC 236 +F+K G +P + + R Sbjct: 316 SFKKWTGQTPGQFRSQLRR 334 >UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUG5_9GAMM Length = 187 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RVE 197 V IV P P + I L++S L++KLK E T+F +L D R+Q A+ + Sbjct: 88 VDKIVEHLPDGPPNQQQIAQALHVSNRTLQRKLKDEGTSFMDLLQDTRLQLARKYLSHPN 147 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 SV + A G++ S F AF++ G +P +R Sbjct: 148 RSVVETAYMLGFSEPSTFSRAFKRWTGVAPADFRDSHR 185 >UniRef50_D0S2A2 Transcriptional regulator n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S2A2_ACICA Length = 339 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 1/103 (0%) Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 + + S S KVRNI+ +P+ ++ ++ L ++ L++ L E T+ Q++ D R Sbjct: 234 SSLGSYSQKVRNILLQQPSQMPRIDEMAAHLQVNLRTLQRHLAIEGVTYEQLIDDIRKDL 293 Query: 190 AKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 A++L++ +V ++A Q GY+ S F AF++ G SP+ Sbjct: 294 AEDLLKTTNLTVEEVAIQLGYSEVSAFSRAFKRWKGISPRNFR 336 >UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTA1_CHRVO Length = 266 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 1/108 (0%) Query: 126 TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDA 185 LL S++ +R ++ + PA PW ++ L + S L+++L +E F IL + Sbjct: 157 PLLREKTDSLTQGLRQLMMLDPAAPWSVETAARRLNLGASTLRRRLAEEDAGFQAILEEV 216 Query: 186 RMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 RM A ++ S+ +IAE GYAS S F FR+ +G +P + + Sbjct: 217 RMGLALQQVQDGRRSIAQIAEASGYASASRFAARFRQRYGLTPSALRR 264 >UniRef50_UPI0001789612 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789612 Length = 405 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 4/123 (3%) Query: 113 SCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPA-HPWKLKDICDCLYISESLLKKKL 171 + + + AC+ + + + + R ++ + A L+ L +S L + L Sbjct: 277 AVAAAYEACREGV-FKEAQLSPLVRRARQLIQEQYAVRELTLESFAQALQVSPVYLSRML 335 Query: 172 KQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 K+E T+F ++ R+Q A L+ E S+ IAE+ GY S YF AF+K G SP R Sbjct: 336 KKELGTSFITLMTQTRIQKAIQLLNATELSILDIAERVGYDSQHYFSTAFKKVMGVSPNR 395 Query: 230 VSK 232 K Sbjct: 396 YRK 398 >UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=Burkholderia RepID=Q2SUK1_BURTA Length = 347 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 11/203 (5%) Query: 31 LMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLN 90 MV+ A+ + H K + ++ + +P A P + Sbjct: 154 FMVETAILFNSLLTPSHDKTMKANAELCFEWPEPPYFARYRDRLPRCHFGA---PANQIR 210 Query: 91 EMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHP 150 A L+ R + + ++ A G+ S+ +VRN++ Sbjct: 211 CEAALLDEPIRTANAHTAQMIVQQCEAELARLGY-------AESIVERVRNLLIRGNNGY 263 Query: 151 WKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGY 209 L + L++SE LK+KL T+S +L + R++ A L+ +V +IA + GY Sbjct: 264 PSLDALARELHLSERTLKRKLSDYGATYSALLDEIRLRDALRLLEGTHLTVEEIAARVGY 323 Query: 210 ASTSYFIYAFRKHFGNSPKRVSK 232 + F AFR+ G SP + Sbjct: 324 TDRANFSRAFRRWTGTSPSSRRR 346 >UniRef50_P10805 Porin thermoregulatory protein envY n=41 Tax=Enterobacteriaceae RepID=ENVY_ECOLI Length = 253 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 103/242 (42%), Gaps = 9/242 (3%) Query: 5 CSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYE-RHFKEIGFTENTIKKYLQ 63 C VI ++ + L E H N I YL Sbjct: 9 CVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINRNIINDYLL 68 Query: 64 CTNIQTVTVPVPAKF---LRASNVPTGLLNEMIAYLNSEERNHH---NFSELLLFSCLSI 117 N V ++ + A + T + + A + ++ + + LLF+ LS Sbjct: 69 FLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRALLFTVLSN 128 Query: 118 FAACKGFITLLTNG-VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT 176 F FI LL SV V I+ H W L+ + L +S SLLKKKLK E T Sbjct: 129 FLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENT 188 Query: 177 TFSQILLDARMQHA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 ++SQI+ + RM++A + L+ ++ ++A+ CGY+STSYFI F+ +G +P + R Sbjct: 189 SYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQR 248 Query: 236 CQ 237 + Sbjct: 249 QK 250 >UniRef50_D1X8C9 Transcriptional regulator, AraC family n=2 Tax=Streptomyces RepID=D1X8C9_9ACTO Length = 304 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 3/150 (2%) Query: 86 TGLLNEM-IAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVN 144 + LL E+ IAY +E+ + + L + A+ + + L T + + +I+ Sbjct: 156 SPLLRELLIAYTRAEDDDRPERARLRAVLLDQLRASAQQPLHLPT-PTTPLLRALCDILR 214 Query: 145 MKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGSVNKI 203 PA L ++ + S+ L + + + TF Q R+ HA L+ V + Sbjct: 215 ADPADSRTLAELGHLVGASDRTLSRLFRSDLGMTFPQWRTQLRLHHALILLTERTPVTAV 274 Query: 204 AEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 A QCG++STS FI FR+ FG++P E Sbjct: 275 AHQCGWSSTSAFIEVFRRTFGHTPGSHRTE 304 >UniRef50_C5D8H7 Two component transcriptional regulator, AraC family n=3 Tax=Geobacillus RepID=C5D8H7_GEOSW Length = 515 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDARMQHAK-NLI 194 GK ++ ++ HP L+++ + + IS K K + TF + + R+ AK + Sbjct: 412 GKAKDYIDEHYHHPLTLEEVAEYVGISPYYFSKLFKDRFGMTFIDYVTEVRIARAKKEMA 471 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 S+ +I GY +YF F+KH G SP K+ Sbjct: 472 DPNKSLKEICFLVGYNDPNYFSRVFKKHTGMSPTEYRKK 510 Score = 42.2 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 186 RMQHAKNLIRVEG----SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR-CQSHT 240 ++ AK+ I ++ ++AE G S YF F+ FG + E R ++ Sbjct: 410 KIGKAKDYIDEHYHHPLTLEEVAEYVGI-SPYYFSKLFKDRFGMTFIDYVTEVRIARAKK 468 Query: 241 GMNTGN 246 M N Sbjct: 469 EMADPN 474 >UniRef50_Q1QE65 Transcriptional regulator, AraC family n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QE65_PSYCK Length = 311 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 10/139 (7%) Query: 106 FSELLLFSCLSIF-----AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCL 160 ++ +++ CL ++ A ++ + + L+ K ++ P+ W + ++ + Sbjct: 173 WASIMMIECLRVYIESLPEATDSWLKAMKDPFLT---KALVAMHENPSQNWSIHELAEVA 229 Query: 161 YISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYA 218 +S S ++ K L+D R++ A +R + S+++I+E GYAS S F A Sbjct: 230 GMSRSSFAQRFKDVVGMPPLTYLIDYRLRLAARYLRLQQNSISRISELVGYASDSTFSQA 289 Query: 219 FRKHFGNSPKRVSKEYRCQ 237 F++ +G SPK ++Y+ Q Sbjct: 290 FKRVYGISPKAYRQQYQKQ 308 >UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VTM5_MARMS Length = 257 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 83/220 (37%), Gaps = 5/220 (2%) Query: 16 ANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVP 75 D F +L+ + FE + + + + + +++ V Sbjct: 38 LFWQDDVLEFDASTLLLTKAGQQLTFENEPSKERFLSVQMSFLLP--PAEGMIQMSIKVA 95 Query: 76 AKFLRASNVPTGLLNEMIAYLNS-EERNHHNFSELLLFSCLSIFAACKGFITLLTNG-VL 133 P + + +L + ++ ++ + A G + LL G + Sbjct: 96 KNECSPRFKPNRSVMASLDFLLELDTQSVSETAQAYWLNGFYQQLAEVGKLHLLFEGHSV 155 Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 S K+ ++ P ++L + +S + L ++LK+E T F +L RM +A +L Sbjct: 156 SFEQKITELLQQAPWQDYQLDQVATHFSMSRATLIRRLKEENTQFRTLLTRVRMNYALSL 215 Query: 194 IRVEGSVN-KIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 ++ IA +CGY S F F K FG +P + K Sbjct: 216 MQQGYRQQMDIAVRCGYQSQERFSQRFYKSFGITPSQYIK 255 >UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=Enterobacteriaceae RepID=A4TK67_YERPP Length = 291 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 2/161 (1%) Query: 79 LRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA-ACKGFITLLTNGVLSVSG 137 + N+ +N NS N + ++ L + + + + N +S Sbjct: 111 MAIRNLAPEFINTFGNIFNSISENSDIPTVIIKHRMLELLLWLAQRDVKFILNDGNGLSE 170 Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-V 196 KVR + P W ++ + + +SE +L++KL E +++D RM A L++ Sbjct: 171 KVRRCLASDPHKIWSASEVAEHMTMSEVVLRRKLAAENILLRDLMIDVRMTSALRLLQGT 230 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 + ++ IA Q GY S+S F FRK FG +P + +R Q Sbjct: 231 DWPISLIANQIGYESSSRFAERFRKRFGFAPTAIRGHHRLQ 271 >UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZS6_GEOSF Length = 324 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 1/99 (1%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAK-NL 193 +S V IV H W LK + L +SE +++KL+ E TF ++L +AR++ A+ L Sbjct: 219 LSDSVEAIVKQDLNHKWTLKSVAQSLNMSERSMQRKLQDEGQTFRKLLNNARIRTAESYL 278 Query: 194 IRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + + S+ +I G++ S+F F+++ G +P + K Sbjct: 279 LNSQLSLTEIGYLTGFSDYSHFSKEFKRYSGTNPSQYRK 317 >UniRef50_B1SDU2 Putative uncharacterized protein n=1 Tax=Streptococcus infantarius subsp. infantarius ATCC BAA-102 RepID=B1SDU2_9STRE Length = 288 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 95/222 (42%), Gaps = 18/222 (8%) Query: 25 FSDGEILMVDNAVRTHFEP---YERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRA 81 G++ ++ ++ + + +GF+ + + L T + + Sbjct: 73 LKTGDMFILPKGKVAFYQADGEHPWTYLWVGFSGSKAENILSKTQLLD-------HYFCH 125 Query: 82 SNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC------KGFITLLTNGVLSV 135 S + + +L++++ ++ + +EL L + L A ++ + + + Sbjct: 126 STLESKVLDQIVKLTQFRDQKLDDVTELQLTAELYKLLAFLMKEFPSKAMSDSSILIQNY 185 Query: 136 SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT-TFSQILLDARMQHAKNLI 194 +V+ I++ + +P K+ +I L ++ S L K K+E + L+ RM+ + +L+ Sbjct: 186 IKQVKKIIHTQYGNPLKISEIAKKLNLNRSYLYKIFKEETDYSLKDYLIQIRMEKSADLL 245 Query: 195 -RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 R +++IA G+ F AF+KHFG SP K + Sbjct: 246 TRTTFHISEIANAVGFPDALAFSKAFKKHFGQSPSHYRKALK 287 >UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=Pseudomonas RepID=B1JCK3_PSEPW Length = 353 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Query: 134 SVSGKVRNIV-NMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN 192 V+ +VR ++ + P K + + L++S+ L+++L++E T+F +L D R + A+ Sbjct: 231 RVTHRVRQVLCRILPQGEPKRETLAQALHLSQRTLQRRLQEEGTSFQALLDDTRRELAEQ 290 Query: 193 LI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 + + ++ + A G+A S F AFR+ F +P Sbjct: 291 YLAQPGMTLLETAYLLGFADPSNFYRAFRRWFDVTPSEYR 330 >UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=Clostridiales RepID=C6JEP4_9FIRM Length = 531 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 2/138 (1%) Query: 98 SEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDIC 157 E ++ + L + C S+ + + +N L D+ Sbjct: 392 RELQSCTDIENLKKWFLDKTREICTKLENSKEKEAGSIIDRAKEYINENFRRDISLDDVS 451 Query: 158 DCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYF 215 + IS K KQE F + L + R+++A+ L++ S+ +I Q GY+ +YF Sbjct: 452 REVDISPYYFSKLFKQETGKNFIEYLTEIRLKNARELLQDSRLSIKEICAQSGYSDPNYF 511 Query: 216 IYAFRKHFGNSPKRVSKE 233 F+K+ G +P + Sbjct: 512 SRIFKKYEGVTPSEFRER 529 >UniRef50_A9WH32 Sensor protein n=2 Tax=Chloroflexus RepID=A9WH32_CHLAA Length = 1202 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDAR 186 L++ + K ++ HP +DI + +SE L +QE TT + L R Sbjct: 1089 LSDQAQMLVRKAMAYIHSHYTHPLTRQDIAHYVGMSEDYLTHCFRQELGTTPVEYLNRYR 1148 Query: 187 MQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + A++L+ + S+ IA + G++S+SYF FRK G SP+ + Sbjct: 1149 VLQARHLLAESDKSITNIALEVGFSSSSYFSRVFRKEVGQSPEEYRR 1195 >UniRef50_B7V3C5 Probable transcriptional regulator n=7 Tax=Pseudomonas aeruginosa RepID=B7V3C5_PSEA8 Length = 357 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 64/162 (39%), Gaps = 8/162 (4%) Query: 71 TVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTN 130 VPVP R L+ I S + C+ + LL Sbjct: 179 AVPVPLPQCRYDQAHVQLVFPAILLARSLPMADPA-------ALRRAREHCERELALLDA 231 Query: 131 GVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA 190 G + +VR + + L+++ L++S LK+ L T+F Q+L AR + A Sbjct: 232 GRRDICARVRLELERQEQRFPNLEEVAARLHLSSRSLKRHLHDAGTSFRQLLGQARQRQA 291 Query: 191 KNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 L+R E S+ +IA GY+ + F AF++ G P Sbjct: 292 LRLLRRPEVSLQRIALYLGYSDPTNFTRAFKRWTGEPPSDTR 333 >UniRef50_C6D5X4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5X4_PAESJ Length = 533 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 20/205 (9%) Query: 34 DNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMI 93 + VRT +E H ++ + ++ ++ + + + + A + + L++ I Sbjct: 341 SDKVRTLAGKWETHIRKEQYASEEVRDWVLKL-LIDMRLKLHAMLFASQTLTAEKLHKEI 399 Query: 94 AYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGK-----VRNIVNMKPA 148 Y +S L+ F L VS + R V+M Sbjct: 400 VYFDS------------LWGLFEWFHTQLQSYIAAREEALPVSKRREVSEARKYVSMNLG 447 Query: 149 HPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQ 206 L+++ L+++ S + K+E TF + + D +++ AK L+ + V++I E Sbjct: 448 KRISLEEVAAHLHMNPSYFSRFFKKETGLTFIEYVTDQKIERAKELLDQTNYYVSEICEM 507 Query: 207 CGYASTSYFIYAFRKHFGNSPKRVS 231 GY + SYFI F+ G +P Sbjct: 508 LGYDNQSYFIKTFKAQTGLTPTEYR 532 >UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein n=6 Tax=Vibrio RepID=Q7MCG4_VIBVY Length = 268 Score = 117 bits (293), Expect = 4e-25, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 82/225 (36%), Gaps = 10/225 (4%) Query: 16 ANILDKDYAFSDGEILMVDNAVRTHFEPYER----HFKEIGFTENTIKKYLQCTNIQTVT 71 + +L+ HFE + ++ F+ + L + T Sbjct: 42 LYWQETTLDIDAHSLLLCRANHALHFENLPQAGQFSSRQFCFSLPPTSEMLSLSERNGTT 101 Query: 72 VP---VPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLL 128 P + +R LN + E L+ A + Sbjct: 102 TPHLTLHHPVVRCDKALNHTLNLLAGLPLDELST--ETLTFWLYGFYQQLAERGVLHLMF 159 Query: 129 TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQ 188 T S K+ + +P+ +++D C IS++ L ++LK+E T + ++L R+ Sbjct: 160 TPQGQSFEQKLSEFIAQQPSKDHQIEDACQHFAISKATLIRRLKEEGTQYREVLSKVRLS 219 Query: 189 HAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 HA NL++ +++ CGY S F FR+ FG SP+ K Sbjct: 220 HALNLMQQGHRKTAELSLMCGYQSPDKFSQRFRQRFGLSPREYCK 264 >UniRef50_A1HM14 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM14_9FIRM Length = 247 Score = 116 bits (292), Expect = 5e-25, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Query: 129 TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARM 187 LS +V + P L D ++++ S L + KQE Q F + D +M Sbjct: 134 EEQALSPIQQVLRYMAETPLGDINLTDAARRVHMNPSYLSQLFKQEMQVCFVDYVTDLKM 193 Query: 188 QHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 + AK L+ +++IA++ GYA +YF F+KH SP K+ Q+ TG Sbjct: 194 KEAKRLLATTTLRISEIADRLGYADLAYFSNIFKKHTACSPSEYRKQ---QARTG 245 >UniRef50_Q9Z3Q6 Transcriptional activator rhrA n=1 Tax=Sinorhizobium meliloti RepID=RHRA_RHIME Length = 314 Score = 116 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 9/188 (4%) Query: 52 GFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLL 111 F + Y + + + P+ + L A +P LL YL +E + +++ Sbjct: 124 RFDCAHLPAY-ALASKRDLLKPIMMQPLAAECLPLQLLTNYAGYLLRQEYQSEEHAGMMV 182 Query: 112 ---FSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAH-PWKLKDICDCLYISESLL 167 + L + A G ++ ++ ++ V A+ + + D+ + I+ + Sbjct: 183 AHFYDLLPVLAQDIGNVSPRETPHNRMAS-IKMRVEQNLANGSFSITDVAEAERITPRAI 241 Query: 168 KKKLKQEQTTFSQILLDARMQHAKNLIRVEG---SVNKIAEQCGYASTSYFIYAFRKHFG 224 +K +E TTFS+ +L R+ AK+LI EG S+++IA G+ SYF FR +G Sbjct: 242 QKFFSREGTTFSRYVLGRRLSLAKSLILAEGEATSISQIAYNVGFNDLSYFNRTFRSRYG 301 Query: 225 NSPKRVSK 232 P + + Sbjct: 302 VRPSDLRR 309 >UniRef50_Q399T6 Transcriptional regulator, AraC family n=18 Tax=Bacteria RepID=Q399T6_BURS3 Length = 325 Score = 116 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 16/164 (9%) Query: 89 LNEMIAYLNSEERNHHNFSELLLFSCLSIFA-----------ACKGFITLLTNGVLSVSG 137 L ++ + E R +++L L + A G + L + L+ + Sbjct: 163 LTTLVQLVRDESRAQRPARDIVLARLLEVLLIEALRFTSGTNASPGLVRGLADSRLAAA- 221 Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQILLDARMQHAKNLIR- 195 +R ++ +PAHPW + ++ +S S ++ + + LL RM AK+L+R Sbjct: 222 -IRR-MHERPAHPWTIVELAKEAALSRSTFFERFSRAVGLAPMEYLLTWRMALAKDLLRR 279 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 EG + +IA + GY+S S F AF +H G P + ++E + ++ Sbjct: 280 NEGRIAEIAGRVGYSSASTFSVAFTRHVGRPPAQYAREEQATAN 323 >UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMW7_DESAA Length = 342 Score = 116 bits (291), Expect = 6e-25, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 51/111 (45%), Gaps = 1/111 (0%) Query: 123 GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQIL 182 ++L + S ++ + + D+ + +S L+++LK+E T+F I+ Sbjct: 230 RELSLRIRKQETASSRIVQEIEFRRQGVPGFDDLARHMNMSPRTLRRRLKEEGTSFKNIV 289 Query: 183 LDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 D + + A +L++ + +IA + GY F AF++ G +P + Sbjct: 290 SDVQKEKAIHLLQTTNLPIQQIALELGYEDLPNFYRAFKRWTGKTPGDYRQ 340 >UniRef50_Q46N37 Transcriptional regulator, AraC family n=2 Tax=Cupriavidus RepID=Q46N37_RALEJ Length = 322 Score = 116 bits (291), Expect = 6e-25, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%) Query: 109 LLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLK 168 +LL + +S +G + LL + ++ K + V P PW ++ + +S + L Sbjct: 187 VLLRTLISRGTVTRGVLALLADTRMA---KAVDAVVGSPERPWTIESLAQSANVSRATLA 243 Query: 169 KKLKQ-EQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNS 226 ++ Q T +++ RM+ A L++ + S +AE+CGYAS + F AF FG Sbjct: 244 RRFTQLGGITPLELVTTLRMERAARLLQQDNLSAAAVAERCGYASQAAFGRAFSGQFGVG 303 Query: 227 PKRVSKEYRC 236 P ++ R Sbjct: 304 PGAYRRQQRA 313 >UniRef50_Q397S2 Transcriptional regulator, AraC family n=4 Tax=Burkholderia RepID=Q397S2_BURS3 Length = 322 Score = 116 bits (291), Expect = 6e-25, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 14/162 (8%) Query: 85 PTGLLNEMIAYLNSEERNHHNFSELL--------LFSCLSIFAACKGFIT---LLTNGVL 133 +L + L E R S L+ L L + ++ L Sbjct: 141 HAEVLRWSLEQLAEEVRQERPGSALMATHLVHCMLVQVLRLHLETSTNLSPGWFLALSDR 200 Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKN 192 + +R ++ PAHPW L ++ +S S ++ K+ E T + RM A N Sbjct: 201 QIGAAIRA-IHADPAHPWTLAELAKIAGMSRSGFAQRFKELEGGTAIGYVTRWRMMTAAN 259 Query: 193 LIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 L+R E SV+ IA GY S S F AF++ SP + ++ Sbjct: 260 LLRDGEQSVSSIAFSLGYESESAFSTAFKRTMSCSPLQYRRQ 301 >UniRef50_C2H3H7 Response regulator n=23 Tax=Enterococcus faecalis RepID=C2H3H7_ENTFA Length = 493 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 5/176 (2%) Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK 122 Q + V V F S +L E + E R +N + L++ + A Sbjct: 314 QHATPEYVRYVVFLLFSDISRQYPTVLEENYEKIVEEIRASNNLNT--LYALMQQVLAEV 371 Query: 123 GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT-TFSQI 181 + SVS V + LK + D L+++ S L + K+E +FSQ Sbjct: 372 KNKPKIKKYSESVSQAVER-IEQGYLEELNLKTVADELHLNPSYLGQIFKKETKRSFSQY 430 Query: 182 LLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 L R +HA+ L+ + ++N+I+E+ G+ +T+YF F+K G +PK ++Y+ Sbjct: 431 LNQVRTKHAQKLLLYTDDTINEISEKVGFNNTNYFSKMFKKLNGITPKEFREQYQS 486 >UniRef50_C6B202 Transcriptional regulator, AraC family n=3 Tax=Rhizobiales RepID=C6B202_RHILS Length = 303 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 18/171 (10%) Query: 75 PAKFLRASNVPTGLLNEMIAYLNSEERNHH--------NFSELLLFSCLSIF-----AAC 121 P + AS+ LL+ +A L+ E ++LL L + AA Sbjct: 129 PFIHIPASDRAAALLSTTLATLDDELEAGQMGSTLMTRRMGDILLVQALRAYVGRKGAAE 188 Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQ 180 G+I LTN + G ++++ P H W ++ + + +S S ++ K+ Sbjct: 189 TGWIGALTNPQI---GAAISLIHNSPGHRWTVEALATRIGMSRSAFAQRFKELVGVAPLD 245 Query: 181 ILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 + RM A+ +R + SV +A GY+S S F AF++ FG +PKR Sbjct: 246 YVTRWRMHRAREALRREDVSVAGLAAALGYSSESAFGNAFKRVFGRAPKRY 296 >UniRef50_B0NBQ5 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NBQ5_EUBSP Length = 563 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 7/125 (5%) Query: 120 ACKGFITLLTNGVLS----VSGKVRNIVNMKPAH-PWKLKDICDCLYISESLLKKKLKQE 174 AC+ TL+ ++ + K R V+ A + ++ +C+ L+IS + K+E Sbjct: 438 ACRQIGTLIQKERMASGKMLVEKARQYVDENYADAEFSVETLCESLHISPAYFSTIFKKE 497 Query: 175 -QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 F L D RM+ A L+ + IA + GY+ +YF YAF+K G SP R K Sbjct: 498 AGINFISYLTDVRMKEAMRLLDETDEKTYMIAAKVGYSEPNYFSYAFKKQVGVSPSRYRK 557 Query: 233 EYRCQ 237 R Q Sbjct: 558 GLRDQ 562 >UniRef50_D0IVW4 Transcriptional regulator, AraC family n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0IVW4_COMTE Length = 364 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 3/103 (2%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA-KNLIRV 196 KVR +++ L D+ L++S L +KL++E +F I + R A NL+R Sbjct: 260 KVRELLHADLGR--TLDDVSSRLHMSSRTLIRKLQEEGLSFQGIKDELRRDLAILNLVRN 317 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 + S+ +I+ G+++ + F AFR G +P R S Sbjct: 318 DVSLAEISYALGFSTPAVFHRAFRHWTGMTPGTYRTAQRSISQ 360 >UniRef50_B4WXJ1 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXJ1_9GAMM Length = 331 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 +VS +V +++ L + D L++S L +KLKQE T F Q+ + A L Sbjct: 232 TVSDQVLALLHQHHGKA-SLDTVADQLHMSPRTLIRKLKQENTRFQQLRDQTLSRRAAQL 290 Query: 194 I-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + +V +AE GY + F AF++ FG +P +E Sbjct: 291 LGLPHYTVAAVAEDLGYTDVASFRRAFQRWFGTTPGSFRRE 331 >UniRef50_B2HU78 AraC-type DNA-binding domain-containing protein n=14 Tax=Acinetobacter RepID=B2HU78_ACIBC Length = 342 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 140 RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA-KNLIRVEG 198 R+++ + PA +LKD+ L ISE+ ++++LK E ++ QI + R A + L + Sbjct: 242 RHLLKLHPAEWPELKDVAQQLNISEATVQRRLKHEGVSYQQIKNEIRCDIAIERLSKSND 301 Query: 199 SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 S+ I+E + S F AF+K G SP Sbjct: 302 SIQDISEDLNFHDPSAFHRAFKKWTGVSPGAYR 334 >UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=Pseudomonas aeruginosa group RepID=A4XTI6_PSEMY Length = 360 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 1/101 (0%) Query: 133 LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN 192 V+G+VR ++ P ++ + L++S L+++L +E ++F + + R A Sbjct: 258 QGVAGRVRQLLLQTPGQMADMEQVASRLHLSSRTLRRRLIEEGSSFRALQDEVREALADE 317 Query: 193 LIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 L+ G S+ +IAE+ GY S FI+AF++ G +P R + Sbjct: 318 LLAAGGLSLEEIAERLGYGELSNFIHAFKRWKGTTPGRYQR 358 >UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRN2_ALIAD Length = 274 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 21/240 (8%) Query: 11 HHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK-------YLQ 63 + F + + G ++V F E + I E YL Sbjct: 37 CYLFRLQLDGHAVVTTSGASMVVSAGDLLLFPAGEPYELRIEPDEGDRPGEHLSTDLYLF 96 Query: 64 CT--------NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCL 115 C N + + L + V L ++I + + LL + Sbjct: 97 CNGPWVDKWWNHRPRKRHLRLA-LHENCVY--LWRQLIEEYRRPGKPDEELCDYLLRALC 153 Query: 116 SIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE- 174 F G+ V + ++R + A L DI D + +S S + K+ Sbjct: 154 LTF-DKYGYDPKRATPVPIAAERIRAYIERHAAEDLSLSDIADAVGLSVSRVVHIFKEAY 212 Query: 175 QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 T Q L + R+Q A + +R ++ +IA++CG+ S SYF FR+ +G SP+ + Sbjct: 213 GQTVVQYLQNVRLQMACDRMRFSNLNLEEIADRCGFHSYSYFYRVFRQKYGISPREFRQR 272 >UniRef50_Q3ADL3 Transcriptional regulator, AraC family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADL3_CARHZ Length = 287 Score = 116 bits (290), Expect = 8e-25, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 94/249 (37%), Gaps = 7/249 (2%) Query: 4 VCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQ 63 +C+++ + N L++ + ++ N+ + I N + + ++ Sbjct: 40 ICTILEGKKQVSINELERVEYTKENFAILAPNSKVDLNIENKTKALVIEVDNNVVNQLIE 99 Query: 64 CTNIQ---TVTVPVPAKFLRASNV--PTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 + + F + ++ LNS+E+ +L + L Sbjct: 100 RIQFELGYEEIKKITNYFFLCNFTEEMLETYKRIVRTLNSQEKGKEFLLDLYIQEMLYEI 159 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ-TT 177 +G ++ + + + + +N K+ DI + E + K T Sbjct: 160 LKFRGAKEIINSVKNARINNILSYINESYHKNIKVADIAKIFGMEEYEFCRYFKTYTCKT 219 Query: 178 FSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 + + + R++ AK L++ + SV + + GY + SYFI F+K F +PK+ KE + Sbjct: 220 PKEYIKELRLKKAKELLQYQ-SVTETCYEVGYENISYFIKEFKKAFQMTPKQYQKEAKNN 278 Query: 238 SHTGMNTGN 246 GM+ Sbjct: 279 KKDGMDPPT 287 >UniRef50_B2JSH9 Transcriptional regulator, AraC family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JSH9_BURP8 Length = 354 Score = 116 bits (290), Expect = 9e-25, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 89/229 (38%), Gaps = 14/229 (6%) Query: 19 LDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKF 78 + G+I++ D A E + + I+ + Sbjct: 129 AGRKLVMGVGDIMLFDGARPFRHEVIPDSIILVRMPRSLIRSHFSAVE------KFVNMK 182 Query: 79 LRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGK 138 + LL+ ++ + + + L + + I + S G+ Sbjct: 183 IADGKSIQPLLSGLMREAYALTEETPLLARIHLANAFINAISVALEIQSASEVNESYEGR 242 Query: 139 VR-----NIVNMKPA-HPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN 192 V +I++ + + +I L++S+ L + +E TT SQ L + R+Q + Sbjct: 243 VLFEKALSIIDARIDDQALNVAEIASALHVSDRTLSRIFAREGTTPSQTLWNRRLQKSYR 302 Query: 193 LIRVE--GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 L++ V +IA QCG++ S+F +F++ FG++P ++ K+ + + Sbjct: 303 LLQENVALQVTQIAFQCGFSDLSHFSRSFKRVFGSAPSQILKQRKDEHG 351 >UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 Tax=Aeromonas RepID=A0KMW4_AERHH Length = 270 Score = 116 bits (290), Expect = 9e-25, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 59/135 (43%) Query: 98 SEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDIC 157 ++ R + LL + A G L +++ ++ + ++P L+ + Sbjct: 119 ADRRLNEATQAQLLQGFYAELQAAGGLDLLFPAHTMTLGERLARYLGVEPGADHTLEGVA 178 Query: 158 DCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIY 217 +S + + +KL E +F Q+L RM HA L++ + A CGY S S F Sbjct: 179 PHFAMSRASMARKLAAEGRSFRQLLTQVRMSHALTLLQQGLVPLETALACGYDSPSRFAA 238 Query: 218 AFRKHFGNSPKRVSK 232 F++ FG +P + + Sbjct: 239 RFKQEFGLTPYQYLR 253 >UniRef50_B8I425 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I425_CLOCE Length = 538 Score = 116 bits (290), Expect = 9e-25, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 86/235 (36%), Gaps = 23/235 (9%) Query: 16 ANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENT--IKKYLQCTNIQTVTVP 73 D + F + ++D + E + E+G ENT I YL NI + Sbjct: 304 IQYSDLNSFFRYEDYSILDKYQKQLIENIKSG-NELGVKENTKLISDYLTNNNIN---IH 359 Query: 74 VPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVL 133 F + + ++ +++E++ L + + +LL + Sbjct: 360 YMRNFYYTTLSSINNIRISVSSVDTEKKYSEGEDIASLIKLIEKTDKAEELNSLLEEVAV 419 Query: 134 SVSGKV---------------RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTT 177 ++ KV + + L ++ + +Y+S + + K+E + Sbjct: 420 RIASKVNSFNNKSIKLILRKAIDYIQEHYNEQVTLNEVAENIYVSTFYISRMFKKELGKS 479 Query: 178 FSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 F L D R+ AK L++ ++AE+ G + YF F+K+ G +P Sbjct: 480 FVDYLNDVRIDKAKELLKDVRYKTYEVAEKVGISDPHYFSKLFKKYSGMTPSEYR 534 >UniRef50_A3WY00 Transcriptional regulator, AraC family protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WY00_9BRAD Length = 345 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 4/131 (3%) Query: 103 HHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYI 162 ++ L ++ L C G + L G V+G+VR ++ + P + K I L + Sbjct: 211 RPDYGNELTYAELRQL--CDGLLKQLKLGA-GVAGEVRGLILANLSMPIEFKRIAKYLNM 267 Query: 163 SESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRK 221 SE L+++L++E T+F Q+ + + Q A IR + SV +IA G+ + F +AFR+ Sbjct: 268 SERSLRRRLQEEGTSFRQLADELKAQIAIKYIRDTDLSVEEIAFALGFGDAASFRHAFRR 327 Query: 222 HFGNSPKRVSK 232 +P+ K Sbjct: 328 WTNATPQDYRK 338 >UniRef50_C9P3F6 Signal transduction histidine kinase n=2 Tax=Vibrio RepID=C9P3F6_VIBME Length = 1106 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 23/179 (12%) Query: 78 FLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA-CKGFITLLTNGVLSVS 136 ++ +GLL++++ N + + L LSI ++ + I L+ V+SV Sbjct: 926 LIKDYGSASGLLDKLMVISNGNVQFSLDELVALSGGNLSIHSSSERNLIELMWPQVISVE 985 Query: 137 --------------------GKVRNIVNMKPAH-PWKLKDICDCLYISESLLKKKLKQ-E 174 K+ +IV + A + DI +Y+SE L++++K Sbjct: 986 STPAALLSAKPQSDSELEWLRKLNHIVAERYADAEFTTSDIAKRMYLSERSLQRRMKYLT 1045 Query: 175 QTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 TF + L + R++ A +L+ V ++A CG+ SYF F+ +G SP + ++E Sbjct: 1046 GKTFKEYLTEYRLEQACSLLMSGEKVAQVAFLCGFNDPSYFSQRFKHQYGLSPSQFAEE 1104 >UniRef50_Q0BZ29 Transcriptional regulator, AraC family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZ29_HYPNA Length = 338 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 135 VSGKVRNIVNMKPAH-PWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 + KVRN ++ + P + L SE L+++L +E F+Q+L AR + A+ Sbjct: 234 LPEKVRNCLHSQMGRVPPSMAGTAQLLGFSERTLRRRLAEEGVNFAQLLQGARKEAAEIY 293 Query: 194 IRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 +R ++ +IA GY+ S F+ AFR G SP +E R Sbjct: 294 VREGKLTLTEIAHATGYSDQSAFVRAFRGWHGVSPGAYRREVRA 337 >UniRef50_C7RUT1 Transcriptional regulator, AraC family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RUT1_9PROT Length = 346 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 5/148 (3%) Query: 99 EERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICD 158 E + F + S+ A G++ L + + GK +++ +PA PW + ++ Sbjct: 196 ERVSEMVFVDAARRHLESLPADASGWLAGLRDRHI---GKAIGLLHARPAEPWTIDELGR 252 Query: 159 CLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFI 216 + +S S L ++ + Q L + RMQ L+R + +V IA++ GY S + F Sbjct: 253 QIGLSRSALHQRFVELVGQPPMQYLTNWRMQRGACLLREGDATVATIAQEVGYDSEAAFA 312 Query: 217 YAFRKHFGNSPKRVSKEYRCQSHTGMNT 244 AF++ G P + R H G + Sbjct: 313 RAFKRLAGTPPAAWRRAQRVSKHGGGDE 340 >UniRef50_C6W9P9 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W9P9_ACTMD Length = 309 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 11/194 (5%) Query: 56 NTIKKYLQCTNIQTVTVPVPAKFL-RASNVPTGLLNEMIAYLNSEERNHHN--------F 106 T+ + + T+ +P + RA LL + L E + Sbjct: 116 CTVDFEFRDADASTLFSALPPAVVVRADETGGQLLWNIATLLVHEFQEPRTGQSLVLEHL 175 Query: 107 SELLLFSCLSIFAACKGF-ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISES 165 +++LL L A + L + V G V V+ +P H W L+++ +S S Sbjct: 176 AQILLVHMLRSHADSSHEPLGWLASVVDDGIGAVLRAVHAEPGHRWTLEELAAIARMSRS 235 Query: 166 LLKKKLK-QEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFG 224 + + L++ RMQ A+ +R + S+ IA GY S S F AFR+ G Sbjct: 236 SFAVNFRTKVGKPPLDYLIEWRMQLARAALRTDDSLTSIAGAIGYRSESAFSTAFRRVVG 295 Query: 225 NSPKRVSKEYRCQS 238 SP+ R ++ Sbjct: 296 VSPREFRVSLRPRA 309 >UniRef50_B7S369 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S369_9GAMM Length = 357 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 2/103 (1%) Query: 131 GVLSVSGKVRNIVNMKP-AHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 SV+ ++R I+ A +++ L +S L+++L++E T++ +I +AR Sbjct: 255 STFSVTHRIRKILGDDFRAEMPSFEELTSLLNMSARTLRRRLEKEGTSYQRIKDNARRDA 314 Query: 190 AKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 A +L+ R +V+++AE+ G++ S F +F+K G SP Sbjct: 315 AISLLSREGLTVSEVAERVGFSDPSAFHRSFKKWTGLSPGSYR 357 >UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GN71_SORC5 Length = 329 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE- 197 VR +V PA PW ++ L +S++ L+++L + +F +L R+ AK L+R Sbjct: 216 VRALVRRDPARPWAAPEVARALGVSDATLRRRLGAKGVSFRALLWKERLDLAKGLLRSGR 275 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNA 250 V ++A CGY S S F FR+ G SP +R ++ + ++A Sbjct: 276 HGVLEVATACGYDSASRFAEQFRRSEGVSPSEYRARHRASANGCWSEEPELDA 328 >UniRef50_C4GGT9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GGT9_9NEIS Length = 316 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 15/176 (8%) Query: 79 LRASNVPTGLLNEMIAYLNSE-ERNHHN-------FSELLLFSCLSIFAACKGFITLLTN 130 + N P +++ L E +N H+ S +LL L + + LT Sbjct: 134 IIILNTPHSTTQAIVSLLQYEISQNEHSTTAAINALSTVLLVHILRTYLSQNEHQAPLTG 193 Query: 131 GVLSVSGK----VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDA 185 + + V V +P W+++++ + +S + L + + Q QT+ + Sbjct: 194 VLNGWRDRRLRSVVQAVTQEPGRDWRVEELAELAKLSRAQLMRLFRSQMQTSPHAFVSSM 253 Query: 186 RMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 R+Q A L+R + ++ +A + GY S ++F F+KH+G +PK+ ++ R + T Sbjct: 254 RLQKAAMLLRNSQSTILAVALESGYQSETHFGKVFKKHYGCTPKQYRQQ-RITAET 308 >UniRef50_C4G6T3 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G6T3_ABIDE Length = 534 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 2/107 (1%) Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDAR 186 +++ ++ + +N + L + D ++S++ + + LK+ +F Q+L+ R Sbjct: 426 FDERYQNMAKRILDYLNEYYSEDLTLDSVADKFHMSKTYISRILKKYTNQSFLQLLISRR 485 Query: 187 MQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 M A+ +I + + +IAE+ GY SYFI F+K +G +P + Sbjct: 486 MDIARKMIAEDKFKLYEIAEKVGYNDFSYFIQVFKKKYGVTPNEYRR 532 >UniRef50_P23774 987P fimbrial operon positive regulatory protein fapR n=1 Tax=Escherichia coli RepID=FAPR_ECOLX Length = 260 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 1/145 (0%) Query: 87 GLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMK 146 ++ ++ L L F I+L ++ ++ S ++ ++ Sbjct: 104 SIVIDLFKRLKDNGSPEFTAIYELAFLVSKCENPSMFAISLFSSVAVTFSERIVTLLFSD 163 Query: 147 PAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN-LIRVEGSVNKIAE 205 WKL DI + ++ISE ++K+L+QE F+Q++LD RM A +IR + + IA Sbjct: 164 LTRKWKLSDIAEEMHISEISVRKRLEQECLNFNQLILDVRMNQAAKFIIRSDHQIGMIAS 223 Query: 206 QCGYASTSYFIYAFRKHFGNSPKRV 230 GY S SYFI F++++G +PK+ Sbjct: 224 LVGYTSVSYFIKTFKEYYGVTPKKF 248 >UniRef50_Q7MF52 AraC-type DNA-binding domain-containing protein n=6 Tax=Vibrio RepID=Q7MF52_VIBVY Length = 308 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 10/182 (5%) Query: 62 LQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHH--------NFSELLLFS 113 Q I + +P F+ + L +++ + +E +ELL + Sbjct: 126 FQHIGIHGILQALPCVFVIKAEESEKWLTPIMSMILAESYQDGTGSDVIIGRLAELLFIN 185 Query: 114 CLSIFA-ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 L + + + LL+ V + V+ +P H W L+ + +S S L + Sbjct: 186 ALRAYLYSHPEQVGLLSLYAHPKLRHVISAVHQQPQHDWTLESLAKHCAMSRSALANTFR 245 Query: 173 Q-EQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 Q +T + L RMQ A + I+ S+ +AE GY S + F AF+K F SP + Sbjct: 246 QISGSTVIEYLTWWRMQLAWSQIKAGDSIALVAESVGYRSEAAFSRAFKKAFLISPGKAR 305 Query: 232 KE 233 KE Sbjct: 306 KE 307 >UniRef50_C7GA03 DNA-bindng response regulator, AraC family n=2 Tax=Clostridiales RepID=C7GA03_9FIRM Length = 276 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 131 GVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQH 189 + +V+ +R ++M L+ + + + S++ K KQ +F L + R++ Sbjct: 157 RMSAVAENIRQYIDMHYKEDISLQSVAEEMNYSDAYFCKIFKQCFDKSFIGYLTEYRLER 216 Query: 190 AKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTM 248 AK L+ +V I+ GY ++YF F++ G++P EYR + MN GNT Sbjct: 217 AKQLLADVRINVKDISVNVGYRDSNYFTKVFKRAMGSTPT----EYRMEILKQMNKGNTA 272 Query: 249 NALA 252 L Sbjct: 273 GGLG 276 >UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K690_BACHD Length = 530 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 69/179 (38%), Gaps = 6/179 (3%) Query: 60 KYLQCT-NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC---L 115 Y+Q + K+L+ + G L + ++ FS + + Sbjct: 337 HYVQAILRCSKHPLHDMRKYLQQLFIILGRLLNEMGLHWETAQDFARFSTVHQVTEHGKS 396 Query: 116 SIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE- 174 I + T S+ R+ V+ P L D+ + +S + K K+ Sbjct: 397 EILHIVRTLQEWRTTDEQSLMLLARDYVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERF 456 Query: 175 QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 TFS+ + R++HAK L+ + S+ +I + GY +YF F+K G SP K Sbjct: 457 DLTFSEYVTQLRVEHAKQLLSLTQKSLKEITYEIGYKDPNYFSRVFKKLTGKSPSDYRK 515 >UniRef50_A6CLV0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CLV0_9BACI Length = 525 Score = 114 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIR 195 ++ + L++I D Y+S + +K KQ T + L RM+ AKNL++ Sbjct: 422 QRIEEYLQKNYQEDINLQEIADRFYLSREYISRKFKQDYDATITDYLTSIRMEKAKNLLK 481 Query: 196 VEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 + ++A GY + YF F+KH G +P + Y +S Sbjct: 482 NPYLKIYEVAYGVGYQNEKYFSKVFKKHEGVTPNEYRQSYSTKS 525 >UniRef50_C6CT15 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CT15_PAESJ Length = 520 Score = 114 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 9/154 (5%) Query: 87 GLLNEMIAYLNSEERNHHNFSELLLFSCLS------IFAACKGFITLLTNGVLSVSGKVR 140 GLL+E++ + + ++ + L + + +L G V V+ Sbjct: 365 GLLDELVKLTPPGVGVYQSVADFFNLTELKERIQHLLELSMYRLASLRKEGGNRVIETVK 424 Query: 141 NIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI--RVE 197 ++ +L ++ + ++++ S L KQE T +Q +L RM AK L+ R++ Sbjct: 425 QLIQQDYDKDLELTELSEKVFLNPSYLSTLFKQETGLTITQYVLQLRMMKAKELLKKRLD 484 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 V ++ EQ GY + YF F+K G +PK Sbjct: 485 LKVYEVGEQVGYPDSIYFNKVFKKMVGITPKEYR 518 >UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNX7_9GAMM Length = 401 Score = 114 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 92/227 (40%), Gaps = 12/227 (5%) Query: 20 DKDYAFSDGEILMVDNA--VRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAK 77 +DG+ + N + F + F GF + Q +I+ Sbjct: 169 KPKLQVNDGKAYLYFNQPLQQFRFNRHAIIFLVFGFAQIVENLAQQRLDIRFEFQQDKPD 228 Query: 78 FLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA-----ACKGFITLLTNGV 132 F + LN N + N L L + ++ A CK I L Sbjct: 229 FYKKIFNINQ-LNGEFNAKNDCLILNQNVLSLPLKTADALVARLTIQQCKQDIQKLFLKR 287 Query: 133 LSVSGKVRNIVNMKPAHPW---KLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 +V +N+ LK + + L++SE L+++L +EQT+F ++ + R + Sbjct: 288 KNVDSAAKNVKEELYDEALGFLSLKQVAERLHLSERTLQRQLAKEQTSFQLLIAEVRRKQ 347 Query: 190 AKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 A+ L++ + S+ +IAE+ GYA S+F AF+K +PK + R Sbjct: 348 AEFLLKQQHLSIEQIAERLGYADISHFSRAFKKWTNVTPKFYREVER 394 >UniRef50_UPI0001C36B1C two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36B1C Length = 505 Score = 114 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 80/193 (41%), Gaps = 18/193 (9%) Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK---- 122 ++ + + + + L V +N + + ++ + + + L I+A CK Sbjct: 311 LKHLELSIQRQRLNYDTVIRLFINSYMQIDMLIKEHYPEAANRVTGANLVIYAICKCRTL 370 Query: 123 ----GFITLLTNGVLSVSGKVRN---------IVNMKPAHPWKLKDICDCLYISESLLKK 169 F+T G++ + +VR+ + P K++ + + + S L K Sbjct: 371 REIVNFLTEHITGIIRMVHEVRSDNIIEKLCGYIGKNYRQPLKIETLAEVFGYNGSYLGK 430 Query: 170 KLKQE-QTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 KQE +F L R++ AK L+ + + +A +CG+ S YF F+K+ G SP+ Sbjct: 431 LFKQETGESFHSYLDRVRIEKAKKLLETDARIYSVASECGFQSNEYFSNKFKKYVGVSPQ 490 Query: 229 RVSKEYRCQSHTG 241 K + G Sbjct: 491 AYRKARAEEQGGG 503 >UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNQ4_HAHCH Length = 365 Score = 114 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 2/100 (2%) Query: 135 VSGKVRNIVNMKPA-HPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 ++ +VR+++ A L+ + L++SE L++ L QE T F +++ + R + A+ Sbjct: 258 LTQRVRSLLRQTMATEETSLQKVAQTLHLSERSLQRHLSQEGTNFRELVDEVRQEIAERY 317 Query: 194 IRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 ++ S+++IA G+ F AF++ F SP+ + Sbjct: 318 LKSSSMSISQIAYSLGFNDAGNFSRAFKRWFSCSPETYRQ 357 >UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=2 Tax=Clostridiales RepID=C4Z204_EUBE2 Length = 277 Score = 114 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 5/151 (3%) Query: 87 GLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGV---LSVSGKVRNIV 143 LL+++I +S + F ++ L L CK + + + + +V + Sbjct: 123 ALLDKLIFENDSPDELSPAFIKVGLIELLLFIIRCKNYEENVIKEIDVDNRIIQEVATYI 182 Query: 144 NMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDARMQHAKNLI-RVEGSVN 201 A L+ + D +S S L KK K F + +++ R+Q+A NL+ S+ Sbjct: 183 YEHYADNLSLEYVADKFNLSRSYLSKKFKTATGFGFKEYIINVRIQNACNLLLETNKSIT 242 Query: 202 KIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 IA +CG+ ++YF AFRK G SP + K Sbjct: 243 DIAFECGFNDSNYFGDAFRKAKGISPHKYRK 273 >UniRef50_C8P1S0 AraC family DNA-binding response regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1S0_ERYRH Length = 497 Score = 114 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 5/150 (3%) Query: 90 NEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAH 149 ++M L E + +E + L + +L ++ KV IV A Sbjct: 346 SQMYHDLLHELNKCDSIAE--IREVLHHALEATRYDQVLKQHNPNI-QKVLQIVLKDYAQ 402 Query: 150 PWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQC 207 + I D L+++ L + K+E +FSQ L R++ A+NL+ + ++N+IAE Sbjct: 403 DITISSIADTLHMNAMYLGQLFKKETNKSFSQYLNHFRIKEAQNLLLKSNHNINEIAELV 462 Query: 208 GYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 GY S+ YF F+K G SPK + Y Q Sbjct: 463 GYTSSGYFYKNFKKECGISPKEYRERYLKQ 492 >UniRef50_A1TY01 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TY01_MARAV Length = 345 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 3/108 (2%) Query: 129 TNGVLSVSGKVRNIVNM-KPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARM 187 SVS +V ++ + L+D+ + +S L+++L E F + R Sbjct: 235 MEASASVSDRVLRLLESARDGRLPGLEDVAQQMGVSPRTLRRQLSAEGGGFHGLQESVRH 294 Query: 188 QHAKNLI--RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 Q A+ L+ S+++IAE GY+ S F AFRK G SP ++ Sbjct: 295 QRARELLLRHSAMSIDEIAEHLGYSDPSNFGRAFRKWEGMSPSAWRRD 342 >UniRef50_C6QRS7 Two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QRS7_9BACI Length = 269 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 4/116 (3%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNL 193 V N + + L+++ + ++IS L K K+E + F + + +MQ AK L Sbjct: 149 VIQSALNYIEENYQNGITLEEVAEHVHISPFYLSKLFKKELKMNFVSYVTEKKMQKAKEL 208 Query: 194 IR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTM 248 + + V IA + Y +YF F+K G +P K R + N++ Sbjct: 209 LENTDLPVIHIALELNYQEPNYFSKVFKKVVGITPSEYRK--RSKKGLSKKKHNSV 262 >UniRef50_B4X435 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X435_9GAMM Length = 377 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 2/104 (1%) Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 +L + ++R ++ A P + + + L +S S LK+ L +E T F +L + R ++ Sbjct: 272 QALLPLVSRIRQLLGQGHAEPNQ-ESVAQALNMSRSTLKRHLARENTHFQAVLTNIRKEN 330 Query: 190 AKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 A L+ S+ IAEQ GY+ + F +AFR+ G +P R K Sbjct: 331 AVRLLLGTTHSLEHIAEQLGYSDQTNFSHAFRQWSGMTPGRFRK 374 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 55/103 (53%), Gaps = 2/103 (1%) Query: 134 SVSGKVRNIVNMKPAHPWKL-KDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN 192 S +G++R ++ + + + L +S L+++LK+E T++ ++ R A + Sbjct: 228 SYAGRIRALIGYDIECDLPAFESVAEQLGLSPQTLRRRLKEEGTSYQELKDLIRRDIALH 287 Query: 193 LI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 + + + S+++IA++ G+A S F AF+K G +P + + Sbjct: 288 FLNKPQYSIHEIAQKVGFAEPSAFHRAFKKWVGLTPSDYRQTH 330 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 3/107 (2%) Query: 129 TNGVLSVSGKVRNIVNMKPAH-PWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDAR 186 + + + + R + + L+ + + L +S L + +KQE +F +L R Sbjct: 289 ESRLSPIVRRARQYIQKHFSQSDLTLESVAEFLNVSPVYLSRMIKQELGISFIHLLTKIR 348 Query: 187 MQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 M+ A L+ E +++IAE+ GY + YF AF+K G SP + + Sbjct: 349 MEKAAELLLSTELPIHEIAERVGYDTQHYFSTAFKKAMGVSPNQYRR 395 >UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8Q2W3_9ENTR Length = 285 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 4/144 (2%) Query: 89 LNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPA 148 + ++A L + + L +F L + A I L + ++ ++ P Sbjct: 145 IRNLLAML-ENPQISDDRVRLRIFDLLLVLAEQN--IRFLLPQQQGIFPRLSKLLREAPD 201 Query: 149 HPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQC 207 W K D L +SES L+++L+QE F Q+LLD RM HA LI+ ++ ++A+ C Sbjct: 202 KGWTAKVAGDALAMSESTLRRRLRQEGVRFEQLLLDIRMHHALMLIQTTHWNLAQVADAC 261 Query: 208 GYASTSYFIYAFRKHFGNSPKRVS 231 GY S S F FR FGNSP ++ Sbjct: 262 GYKSVSRFTERFRYRFGNSPAQLR 285 >UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPI7_HAHCH Length = 333 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 2/103 (1%) Query: 134 SVSGKVRNIVNMKPAH-PWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN 192 +VS KV+ IV + + + + + + + +S L +KLKQE +F +++ R A + Sbjct: 231 TVSHKVKAIVAKRLSRGDIEAEKVAEKMNMSRHTLYRKLKQEGVSFQELVEQVRKDKALD 290 Query: 193 LIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 ++ S+++IA G++ S F AF++ G SP + Sbjct: 291 YLQKGKYSLSEIAFLLGFSELSAFSRAFKRWTGESPASYRSQQ 333 >UniRef50_A8VRA4 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRA4_9BACI Length = 229 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 5/135 (3%) Query: 107 SELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESL 166 + ++ + + + K L T G + +++ ++ P LK I Y++ Sbjct: 98 ASAVIRTPIDVRDVRKALDPLKTPGTI---HQIKTYIDEHYDQPLTLKAIAGRFYLNHVY 154 Query: 167 LKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFG 224 L + K + L+ R+QHA+ L+ + + + +IAE+ G+ S YF F K G Sbjct: 155 LGQLFKDTFGVLYKDYLVTVRVQHARRLLSQTDCRIEEIAERTGFGSPEYFTERFDKVTG 214 Query: 225 NSPKRVSKEYRCQSH 239 +P R K++R ++ Sbjct: 215 MTPARYRKQFRERTG 229 >UniRef50_P32677 Uncharacterized HTH-type transcriptional regulator yijO n=33 Tax=Gammaproteobacteria RepID=YIJO_ECOLI Length = 283 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 107 SELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESL 166 + L++ S LS G + ++ +R+ ++ + A + + YIS + Sbjct: 142 ARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNY 201 Query: 167 LKKKLKQEQ-TTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFG 224 L ++ F++ L R++HAK L++ + V ++A CG+ ++YF FRK+ Sbjct: 202 LSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTE 261 Query: 225 NSPKRVSKEYRCQSHTGMNTGNT 247 SP ++Y H+ + T Sbjct: 262 RSPSEYRRQY----HSQLTEKPT 280 >UniRef50_Q0VPB7 Transcriptional regulator, AraC family n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VPB7_ALCBS Length = 355 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 2/124 (1%) Query: 130 NGVLSVSGKVRNIVNMKPA-HPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQ 188 + ++G+V + + H ++ + D L ++ L+++L++E T F+Q+ R Q Sbjct: 232 SRAAGMTGRVVKQLERLLSEHAVSMEAVADALAVTPRTLQRRLQEEGTRFAQLRDQVRHQ 291 Query: 189 HA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNT 247 HA K L + ++ +A + G++ T+ F +AF++ G +P + K Y S T Sbjct: 292 HACKALRQPRCNMQSLAIELGFSDTANFYHAFKRWQGCAPGQYRKRYSNDSGKEAQKAQT 351 Query: 248 MNAL 251 ++L Sbjct: 352 DDSL 355 >UniRef50_A9KQP4 Two component transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=A9KQP4_CLOPH Length = 533 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 3/140 (2%) Query: 94 AYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKL 153 YL + + L L+ I AC+ +S K + + L Sbjct: 390 DYLPTIVEIEQ-YDALRLWFAERIEIACRNVENKKKVTSISTVEKAKLYIRDNYQKDLSL 448 Query: 154 KDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYAS 211 +++ + IS K K+E T F L + RM AK L+ E S+ +I GY+ Sbjct: 449 EEVSRQVDISPYYFSKVFKEETGTNFIDYLTELRMSVAKQLLLESERSMKEIGIMVGYSD 508 Query: 212 TSYFIYAFRKHFGNSPKRVS 231 +YF +F+K+ G +P Sbjct: 509 PNYFSRSFKKNIGITPTEYK 528 >UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein n=13 Tax=Gammaproteobacteria RepID=Q2SDE2_HAHCH Length = 397 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 3/130 (2%) Query: 113 SCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHP-WKLKDICDCLYISESLLKKKL 171 S + + + + K+R +V + + I + +S L+++L Sbjct: 268 SLKEFLKTSPADLLARPDDSNTYTSKIRALVGRDLSQQMPDFEFIASQINVSPQTLRRRL 327 Query: 172 KQEQTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 K+E T+F +I + R A + R E S+N+IA + G+ S F AF+K G +P Sbjct: 328 KEENTSFQEIKDNMRRDAAIYYLSRREMSINEIAFKVGFTEPSTFHRAFKKWTGVTPGDY 387 Query: 231 SKE-YRCQSH 239 + R + H Sbjct: 388 RESVLRERQH 397 >UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory protein n=3 Tax=Escherichia coli RepID=Q8GA53_ECOLX Length = 290 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 88/219 (40%), Gaps = 15/219 (6%) Query: 26 SDGEILMVDNAVRTHFE------------PYERHFKEIGFTENTIKKY-LQCTNIQTVTV 72 +++V VR F + H + I + Y N Sbjct: 67 KRNSVVIVGRNVRISFMADQLYDRILRDTVFFDHTQIITLKKILSLAYGFSKINPLDFET 126 Query: 73 PVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGV 132 P S + + SE +HHN +F C + + Sbjct: 127 DSPKIRKIISIEVNDRIKNSFYNIISE-DSHHNRILSFIFFCKESSVMDAILPLIYFSAA 185 Query: 133 LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN 192 + +V ++ A W L+ + + ISE ++KKL+ E F +++L+ RM+ A Sbjct: 186 TTFCNRVIELIESNIAKKWTLRLLSEEFSISEIAIRKKLEAEGVIFRELILEIRMKKAMT 245 Query: 193 LI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 L+ E SV+KIA++ GY + SYFI FR+ FG +PK++ Sbjct: 246 LLIAGELSVSKIADKVGYNNISYFISHFRQFFGMTPKQL 284 >UniRef50_A6P0J9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0J9_9BACE Length = 425 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQ 188 V S + + + +N L+D+ L+++ES L K +QE T+F+ L R++ Sbjct: 311 PQVSSATTRAVSYINAHYMDKLTLRDLASALFLNESSLSKLFRQELGTSFTDYLNRIRIE 370 Query: 189 HAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 H+ L+R + S+ +I+ G+ SYF F+K G +P++ + + HT Sbjct: 371 HSTELMRNTDRSLLEISGLVGFDDQSYFTKIFKKVTGTTPRQYKSQLNNEKHTS 424 >UniRef50_C3SIM7 Membrane protein n=86 Tax=Enterobacteriaceae RepID=C3SIM7_ECOLX Length = 283 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 65/143 (45%), Gaps = 6/143 (4%) Query: 107 SELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESL 166 + L++ S LS G + ++ +R+ ++ + A + + YIS + Sbjct: 142 ARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNY 201 Query: 167 LKKKLKQEQ-TTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFG 224 L ++ F++ L R++HAK L++ + V ++A CG+ ++YF FRK+ Sbjct: 202 LSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTE 261 Query: 225 NSPKRVSKEYRCQSHTGMNTGNT 247 SP ++Y H+ + T Sbjct: 262 RSPSEYRRQY----HSQLTEKPT 280 >UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like protein n=2 Tax=Vibrio fischeri RepID=Q5DYZ5_VIBF1 Length = 261 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 8/149 (5%) Query: 86 TGLLNEMIA-YLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVN 144 LL EM + L+S + HH LF+ L + S+ K+ + Sbjct: 115 FSLLIEMSSQNLSSNVQKHH------LFAFYQQLVEVGALHVLFSESHDSLQNKLSAYFS 168 Query: 145 MKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE-GSVNKI 203 PA ++L ++ +S + L ++L Q+ T F +L + RM HA +L++ S + Sbjct: 169 KDPAENYQLDEVSHAFSMSRATLIRRLNQDGTNFRTVLANVRMSHALSLMQERKQSQLDL 228 Query: 204 AEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 A QCGY S + F F + FG +PK+ K Sbjct: 229 ALQCGYQSETRFSQRFHQQFGITPKQYMK 257 >UniRef50_A3M7C3 Putative transcriptional regulator (AraC family) n=2 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M7C3_ACIBT Length = 339 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 59/98 (60%), Gaps = 1/98 (1%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI 194 ++ VR ++ + +K+KD+ + L+++E L+++L +E TF +L R +HAK L+ Sbjct: 235 LTALVRELLFDEVEGFFKMKDVAEKLHLTERTLQRQLAKEGVTFQILLDQVRERHAKKLL 294 Query: 195 -RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 E S++ I+E+ GY+ ++F AF++ +PK+ Sbjct: 295 NHHEYSISYISEKLGYSEVTHFTRAFKRWTNQTPKQYR 332 >UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=Pectobacterium RepID=D0KCL6_PECWW Length = 288 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 1/165 (0%) Query: 68 QTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITL 127 + +T + A + L + + N N S L L + + Sbjct: 124 EQLTQVYRLRPFTALALDGDLTRTLQHLVEGITGNTLNESRLELRLMDMLLVLSERGYHF 183 Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARM 187 VS ++R +++ +P W + L +SE+ L+++L EQT F +LL+ RM Sbjct: 184 GVPPQPGVSTQLRALISEEPERHWTAQSAGRLLAMSEATLRRRLSAEQTRFEVLLLETRM 243 Query: 188 QHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 QHA L++ S+ ++AE CGY S++ F F+ FG SP ++ Sbjct: 244 QHAMMLVQTTSWSMQRLAEACGYKSSARFSERFKTRFGCSPTKIR 288 >UniRef50_B8FH05 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH05_DESAA Length = 338 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 2/103 (1%) Query: 132 VLSVSGKVR-NIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA 190 + +VR ++ P ++ + IS L++ L+ + T+F++IL + R A Sbjct: 234 TERLDQQVRSRLLKSLPLGEPSIETTAQSMGISPRSLQRHLRNQGTSFTEILDETRKHLA 293 Query: 191 KNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +NLIR SV +A Q GY+ +S F AFR+ FG SP + Sbjct: 294 ENLIRYPHLSVTDVAFQLGYSDSSNFSRAFRRWFGKSPNMYKR 336 >UniRef50_C6CTP9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTP9_PAESJ Length = 537 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 5/143 (3%) Query: 92 MIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPW 151 + L+ + R L + L+ FAA G N S+ + + Sbjct: 397 LYVLLDEQGRLSLELCRRELLNGLTAFAALTGAGG---NKEHSIMRDIARYMEQNYNREV 453 Query: 152 KLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGY 209 L+DI + Y+S + ++ KQE L R++ AK L++ + +IAE GY Sbjct: 454 TLQDISERFYLSREYISRRFKQEMGENVFDYLGRIRVEKAKLLLQNPNLKIAQIAEMVGY 513 Query: 210 ASTSYFIYAFRKHFGNSPKRVSK 232 YF F+K G SP + K Sbjct: 514 DDDKYFSKVFKKFEGQSPNQYRK 536 >UniRef50_A7HAQ8 Helix-turn-helix-domain containing protein AraC type n=9 Tax=Bacteria RepID=A7HAQ8_ANADF Length = 356 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 4/137 (2%) Query: 105 NFSELLLFSCLSIFAAC--KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYI 162 SEL+ + + A G L G+ +++ +PAHPW L ++ + + Sbjct: 210 RLSELMFVEVVRSYLAALPAGNTGWLAGLRDEFVGRALALLHGRPAHPWTLDELARKVAL 269 Query: 163 SESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIRVEGS-VNKIAEQCGYASTSYFIYAFR 220 S S L ++ Q Q L RMQ A L+ + + V+++A + GYAS + F AF+ Sbjct: 270 SRSALAERFTQLVGRPPMQYLAGWRMQLAAGLLLGDSAGVSQVAAEVGYASDAAFSRAFK 329 Query: 221 KHFGNSPKRVSKEYRCQ 237 K G P + + Sbjct: 330 KAVGVPPAAWRRSRSAK 346 >UniRef50_A1TXY8 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TXY8_MARAV Length = 346 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 7/132 (5%) Query: 115 LSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHP-WKLKDICDCLYISESLLKKKLKQ 173 S + S S KVR +++ + A + ++S L +KLK+ Sbjct: 220 YSAVLKQVNAVMARLQTRRSFSRKVRRLISRQMATDRIDADTLARQCHMSRQTLYRKLKK 279 Query: 174 EQTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 E +F ++ R A + + ++ +IA G++ S F AF++ G +P + Sbjct: 280 EGMSFHDLVEQVRKDKALRYVADDQYALGEIAFLLGFSELSAFSRAFKRWTGVAPAQFR- 338 Query: 233 EYRCQSHTGMNT 244 SH G+ + Sbjct: 339 ----ASHQGLES 346 >UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N3I2_9GAMM Length = 338 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 129 TNGVLSVSGKVRNIVNMKP--AHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDAR 186 N S++ ++R I+ + + + L S L+++LK+E T+F I R Sbjct: 226 PNNTTSINAQIRRILQGNMDDSELPDFETVAHKLNTSTQTLRRRLKEENTSFQAIKDQVR 285 Query: 187 MQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 A + S+N+IA + G+ S F AF+K G +P E Sbjct: 286 RDMAIYYLGDPNISINEIALKVGFTEPSTFHRAFKKWTGMTPGDYRSEQ 334 >UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS86_9BACE Length = 425 Score = 113 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 3/122 (2%) Query: 126 TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLD 184 +L+ + K + L+D + +S S + K+E +F+ L Sbjct: 301 SLVEVKHRDIICKAIEYLKRNCRDRVTLEDTAGHVGLSPSYFSRVFKEEVGESFNSYLTA 360 Query: 185 ARMQHAK-NLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMN 243 R+ + L+ + S+ +I ++CG+ SYF FRK+ G +P R R + G Sbjct: 361 LRISRGRAMLLDTDASIAEICDRCGFDDQSYFTKVFRKYTGVTPGRFR-ARRGRPENGEE 419 Query: 244 TG 245 G Sbjct: 420 PG 421 >UniRef50_B5XWK6 Transcriptional regulator, AraC family n=5 Tax=Klebsiella RepID=B5XWK6_KLEP3 Length = 306 Score = 113 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 11/171 (6%) Query: 76 AKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF--AACKGFITLLTNGVL 133 F+ N P L + L E + +L + + A + TL T G++ Sbjct: 132 PAFVVVRNQP--RLATFVGLLKEEAQADRAGKSFVLARMVELLFIEAIRSSGTLATPGLM 189 Query: 134 S-----VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARM 187 + +++ PA W + D+ +S S L ++ T LL RM Sbjct: 190 RGLSDPRVAQAIRLLHQAPARRWTVNDLAADCALSRSTLFERFTDLTGMTPMGYLLGWRM 249 Query: 188 QHAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 A L S+ IAE+ GY S S F AF ++ G SP + +++ Q Sbjct: 250 TLAMQWLSETGISIADIAERIGYGSASAFSVAFTRYTGISPGKYARQRATQ 300 >UniRef50_B9JNI2 Transcriptional regulator protein n=2 Tax=Bacteria RepID=B9JNI2_AGRRK Length = 324 Score = 113 bits (283), Expect = 5e-24, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 10/136 (7%) Query: 104 HNFSELLLFSCLSIFAACK-----GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICD 158 + +L L + A G++ L + ++V+ ++ PAH W L + + Sbjct: 167 QQLAYTMLVQALRLHLAEGVTGGVGWLFALADRQMAVA---ITAMHEDPAHRWTLASLAE 223 Query: 159 CLYISESLLKKKLKQE-QTTFSQILLDARMQHA-KNLIRVEGSVNKIAEQCGYASTSYFI 216 +S + K K+ T+ L RM A + L S++ IA GY S S F Sbjct: 224 RAGMSRTTFTLKFKETVGTSPMDYLTRWRMMVAGERLTHSSDSISVIALSLGYESESAFS 283 Query: 217 YAFRKHFGNSPKRVSK 232 AF++ G SP++ + Sbjct: 284 TAFKRMMGCSPRQYGR 299 >UniRef50_C6LLM9 Two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLM9_9FIRM Length = 516 Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 87 GLLNEMIAYLNSEERNHHNFSEL-LLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNM 145 +LNE I +N + ++ ++ L+ G G + +++ + Sbjct: 361 DILNEQIFSVNDCSSSEELLEKVKVILQELTREDQRTG-----ETGSSRIVQEIKRYIQE 415 Query: 146 KPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKN-LIRVEGSVNKI 203 A L + D +Y+S L K+E ++ LL RM+HAK L++ + + ++ Sbjct: 416 HYAENINLNALADQVYLSPKYLSDLFKRETGENYTSYLLYVRMEHAKKYLMQFDLKIYEV 475 Query: 204 AEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 AE GYAS FI F+K G +P + Sbjct: 476 AELTGYASPKQFIRVFKKEVGVTPGEYRNQ 505 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 3/155 (1%) Query: 79 LRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGK 138 + LN + ++ E + A L T+ S S K Sbjct: 103 VETDKALQATLNALFSF--ERESLSEATQRYWMMGLYQQLAERGLLHRLFTSSNTSFSQK 160 Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE- 197 + ++ P L+ + + +S + L +KLKQE T + ++L + R+ HA L++ Sbjct: 161 LSRYLSRSPGDDHPLEFVAERFAMSRATLIRKLKQEGTQYREVLAEVRLNHALYLMQNGS 220 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +V +A+ CGY S F F+ FG +P K Sbjct: 221 YNVALLAQLCGYQSEGRFSQRFKGKFGLTPSEYIK 255 >UniRef50_Q2SUV3 Transcriptional regulator, AraC family n=34 Tax=pseudomallei group RepID=Q2SUV3_BURTA Length = 398 Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI 194 +G+VR + PA + + L +S L+++L E T + ++ + R A+ L+ Sbjct: 298 WAGRVRRHLAGDPARGPTMDVLAAELGVSVRTLRRRLADEGTDYETVVDEIREALAEALL 357 Query: 195 -RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +V +++E+ GY+ S F AFR+ SP + Sbjct: 358 ATTTLTVAEVSERLGYSEPSAFARAFRRWKAMSPNEYRR 396 >UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGM0_SALAR Length = 296 Score = 113 bits (282), Expect = 7e-24, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 23/244 (9%) Query: 12 HAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERH---------FKEIGFTENTIKKYL 62 F + + G+ + + +V + + I +Y Sbjct: 39 RPFYISFSGDILKINKGQAIFIKKSVPFSVLLNWGKMENGLVRNDIVSLKIPQQAIIEYN 98 Query: 63 QCTNIQTVTVP--------VPAKFLRASNVPTGLLNEMIAYLN-----SEERNHHNFSEL 109 + + P + F L+N +I +H + ++ Sbjct: 99 RHYIYKDQNEPRAWASNDYIIINFSHEQTKDYTLINALIESFPVTATGEILYDHVDEAKY 158 Query: 110 LLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKK 169 +L L +L+ L+ S KV +++ + W+ KD+ + +S S KK Sbjct: 159 MLILSLIKQKNAALEDMILSYSSLTTSEKVASLIMSDYSKNWQSKDLAMQMNMSVSTFKK 218 Query: 170 KLKQEQTTFSQILLDARMQHA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 K+ ++ + S + +M A + L R +N IA GY S+SYF F+KHF P Sbjct: 219 KMYKDTGSVSSYITKIKMIEALRQLRRTNRPINSIAISLGYTSSSYFTSVFKKHFKIFPS 278 Query: 229 RVSK 232 V K Sbjct: 279 EVRK 282 >UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clostridium RepID=A0Q2M6_CLONN Length = 246 Score = 113 bits (282), Expect = 7e-24, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKN-LI 194 +V ++ + LKD+ D + S S L K K+E F++ + R+ AK LI Sbjct: 145 QEVVEYIDKNFKNDITLKDVADHVNFSSSYLSKLFKKEMGINFNRYITKIRIDKAKEILI 204 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 S+N+IA GY +YF F+K +P R Sbjct: 205 NSNISINEIAFSVGYNEPNYFCKVFKKIVNMTPSEYRTNSR 245 >UniRef50_C5C0Z0 Transcriptional regulator, AraC family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C0Z0_BEUC1 Length = 329 Score = 113 bits (282), Expect = 7e-24, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 63/153 (41%), Gaps = 11/153 (7%) Query: 92 MIAYLNSEERNHHNFSELLLFSCLSIFAA----------CKGFITLLTNGVLSVSGKVRN 141 ++A ++ E S +L+ + + + C L G+ Sbjct: 168 LVALIDREVSAESPTSSILVDRLIDVVVSAALRAWLERGCGNARAWLAQAHDPHLGRALE 227 Query: 142 IVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGSV 200 ++ +P W+++D+ + S S ++ + + ++ + RM+ A+ L+R V Sbjct: 228 AIHAEPGSSWRVEDLARLAHSSRSQFAERFRSSVGESPARYVTGVRMRRAEELLRTGRGV 287 Query: 201 NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 +++A GY S F AFR+H G +P + Sbjct: 288 SEVAFALGYDSDEGFSRAFRRHSGLAPSEWRRR 320 >UniRef50_C6IY72 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY72_9BACL Length = 413 Score = 113 bits (282), Expect = 8e-24, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 129 TNGVLSVSGKVRNIVNMKPAHP-WKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDAR 186 N V + + + + ++ L+ + L S + L + +KQE TTF+ L R Sbjct: 296 ENAVSPLVRRAKQYMLEHFSNSGLTLEAMAQALQTSPAYLSRMIKQELGTTFNSYLTQLR 355 Query: 187 MQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 ++ A L+ E ++ +IAEQ GY + YF AF++ G SP + K Sbjct: 356 IRRASRLLIATELTIAEIAEQVGYETQHYFSTAFKRATGLSPLQYRK 402 >UniRef50_A8S8Z3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8Z3_9FIRM Length = 420 Score = 113 bits (282), Expect = 8e-24, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 76/215 (35%), Gaps = 20/215 (9%) Query: 32 MVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPV------------PAKFL 79 M++ ++ + Y + QC N +TV P+ + L Sbjct: 210 MLETTLQNYLPCYVTGADAMRCNVLFCLTDAQCQNYRTVLRPLLERASQILYNYFTVRLL 269 Query: 80 RASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKV 139 A PTG L + + + + T G + V +V Sbjct: 270 WAVGRPTGSLLGLARCCRENAHLQPLLTVEQPIQFVEVNEGDA------TAGKMQVVAQV 323 Query: 140 RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTT-FSQILLDARMQHAKNLI-RVE 197 + + + L D+ S + L + + + F + + + R+ AK ++ + + Sbjct: 324 QEYIQSHLSERLTLADVAAVFNFSPNYLSQLFGKYGDSGFVEYITETRIAAAKEMLEQGD 383 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 V +IAE+ GY S YF F+K G SP+ + Sbjct: 384 LKVYEIAEKLGYESAFYFSKVFKKVTGLSPREYQQ 418 >UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33 Tax=Vibrionaceae RepID=A5F2L6_VIBC3 Length = 262 Score = 113 bits (282), Expect = 8e-24, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 5/147 (3%) Query: 86 TGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNM 145 LL EM SEE + + K L + S+ ++ +++ Sbjct: 113 FELLYEMNQQSLSEETQRQ-----FVLGFYAQLRDEKALHLLFPSDNASMRERLARYLSV 167 Query: 146 KPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAE 205 P ++ + +S + L + L E T F ++L + RM +A L++ + ++A Sbjct: 168 NPGDEHNIETVSAHFAMSRATLARHLAAEGTGFREVLSEVRMNYALALLQELRPLMEVAV 227 Query: 206 QCGYASTSYFIYAFRKHFGNSPKRVSK 232 CGY S + F F++ + +P + + Sbjct: 228 ACGYQSLTRFSARFKQQYRLTPYQYLQ 254 >UniRef50_A4A9K9 AraC-family transcriptional regulator n=3 Tax=unclassified Gammaproteobacteria RepID=A4A9K9_9GAMM Length = 336 Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 2/116 (1%) Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 A C + L++ ++ + R+++ K+ + L +S +++L +E +F Sbjct: 216 AECARLLADLSDSA-AIGEQTRSLLRKLEGQYPKMPQVATMLNMSPRTYRRRLTEEGVSF 274 Query: 179 SQILLDARMQHA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 +L + R +HA ++L + IA Q G+ S F A+R+ G +P V + Sbjct: 275 QALLDEVRAEHATRHLRERRLPIASIAYQLGFNDPSNFRRAYRRWTGVTPGAVRNK 330 >UniRef50_A0Z5W7 AraC-type DNA-binding domain-containing protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5W7_9GAMM Length = 339 Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 6/191 (3%) Query: 56 NTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCL 115 YL N + V + + L+E I + E LL L Sbjct: 149 CLATDYLTPENCKPRYVKLIQPEPTNTATWHACLSETIEWEAQEVEVAWESKALLHPRLL 208 Query: 116 SIFAACKGFITLLTNGVL-----SVSGKVRNIVNMKPAHPWKLKD-ICDCLYISESLLKK 169 + + L+ + S+ +V + ++ D + L + L++ Sbjct: 209 ADESTALLNDALMEPQLQQVLRASLHHRVESQISQHLQAGNTTPDLVASDLNMGTRTLQR 268 Query: 170 KLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 LK++ T+F +IL R +HAKNL+ + ++A + GY F +F+ FG SP Sbjct: 269 LLKEDGTSFKEILKLLRQEHAKNLLDTREPIAQVASRLGYDDPGTFSKSFKAWFGLSPSD 328 Query: 230 VSKEYRCQSHT 240 + + + T Sbjct: 329 YIENKKNPTKT 339 >UniRef50_C4V3H9 Response regulator n=2 Tax=Selenomonas RepID=C4V3H9_9FIRM Length = 255 Score = 112 bits (281), Expect = 9e-24, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Query: 143 VNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVN 201 + A P ++++ D L +S S L K + T+FS L + R++ A +L+R + V Sbjct: 161 MEEHIAEPITVREVADELGLSVSYLHKLFSRCGTSFSSYLTECRLRRAGHLLRESDAKVY 220 Query: 202 KIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 +A CGY T YF F+KH G P Sbjct: 221 AVAAACGYQDTRYFSKIFQKHMGMKPTEYR 250 >UniRef50_C6D127 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D127_PAESJ Length = 534 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 60/143 (41%), Gaps = 8/143 (5%) Query: 97 NSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGV------LSVSGKVRNIVNMKPAHP 150 S+ N ++ + S + ++ + + SV K + Sbjct: 385 PSQVPNFPLWASAQIRSLSQYRHWAENIVSAVMDAAFTALESDSVVQKSVQYIKENVEED 444 Query: 151 WKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCG 208 +D+ + ++ + L + K+E L++ +M A+ L+ G +V+ IA+Q G Sbjct: 445 ISREDVAAHVGLNPAYLSRLFKKETGQNLIDYLIETKMARARQLLDTTGMTVSAIAQQVG 504 Query: 209 YASTSYFIYAFRKHFGNSPKRVS 231 Y++ S+F F+K +G +P+ Sbjct: 505 YSNFSHFTKMFKKQYGINPQEYR 527 >UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 Tax=Enterococcus faecium RepID=C9BAM1_ENTFC Length = 483 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 9/188 (4%) Query: 49 KEIGFTENTIKKYLQCTNIQTVTVP--VPAKFLRASNVPTGLLN-EMIAYLNSEERNHHN 105 K++ + I + + + + + FL + L++ E YL E+ H Sbjct: 294 KQLEVAQKMITDFFEQFQLAAMMPEDIRYSSFLLFMEIQRELIDLEDEEYLQGIEKIHQA 353 Query: 106 FSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISES 165 + L L F ++ V KV I++ P LK++ + L+++ Sbjct: 354 KTVQELQQLLLSFIKKHQRQKKYSDNV----EKVIVILHQHYQEPLTLKEVSENLHLNVM 409 Query: 166 LLKKKLKQEQT-TFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHF 223 L + K+E +FS L RM+ AK L+ ++N+IA + GY +T+YF F+K Sbjct: 410 YLGQLFKKETKKSFSAYLNHLRMEKAKQLLLHSNQNINEIASEIGYNNTTYFSKLFKKIV 469 Query: 224 GNSPKRVS 231 G SPK Sbjct: 470 GRSPKEYR 477 >UniRef50_C6LHJ3 Two-component response regulator n=2 Tax=Clostridiales RepID=C6LHJ3_9FIRM Length = 573 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 3/120 (2%) Query: 118 FAACKGFITLLTNGVLSVSGKVRNIVNMKPAHP-WKLKDICDCLYISESLLKKKLKQE-Q 175 + I+ ++ S K + V+ A L IC+ L +S S K+E Sbjct: 451 LSLRSQLISARSSSTKSYIRKAKEYVHSNYADETLSLDSICELLGVSNSYFSTTFKRETG 510 Query: 176 TTFSQILLDARMQHA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 +F+ L D RM+ A + LI IA+ GY ++YF Y F++ FG SP + E+ Sbjct: 511 KSFTTYLTDFRMEQASRMLIETNEKSYVIAKSVGYTDSNYFSYVFKRCFGVSPSKYRTEH 570 Score = 46.4 bits (109), Expect = 9e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 13/89 (14%) Query: 166 LLKKKLKQEQTTFSQILLDAR-------MQHAKNLIRVEG-----SVNKIAEQCGYASTS 213 L+K L + + L+ AR ++ AK + S++ I E G S S Sbjct: 441 TLQKWLTETGLSLRSQLISARSSSTKSYIRKAKEYVHSNYADETLSLDSICELLG-VSNS 499 Query: 214 YFIYAFRKHFGNSPKRVSKEYRCQSHTGM 242 YF F++ G S ++R + + M Sbjct: 500 YFSTTFKRETGKSFTTYLTDFRMEQASRM 528 >UniRef50_C2L0L9 Response regulator receiver protein n=2 Tax=Lachnospiraceae RepID=C2L0L9_9FIRM Length = 541 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 67/173 (38%), Gaps = 14/173 (8%) Query: 75 PAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA-CKG----FITLLT 129 KFL A+ V TGL+ EE + + L CK + + Sbjct: 374 MHKFLLANQVDTGLI------FPKEEDVYQKVQQFSLAELSQWMKEICKKMQIIIQEMRS 427 Query: 130 NGVLSVSGKVRNIVNMKP-AHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARM 187 + S K V+ ++ + L++S + K+E +F L D RM Sbjct: 428 DKTKSFVKKAVEHVHSHYMDKDLTVEALSQELHVSAAYFSTIFKRETGKSFINYLTDYRM 487 Query: 188 QHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 + A L+ E IAE GY+ +YF YAF+K FG SP + + + Sbjct: 488 EKALRLLMEEEEKTYIIAEAVGYSDPNYFSYAFKKKFGMSPSKYKSNSKGKEG 540 >UniRef50_D2LGD7 Transcriptional regulator, AraC family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGD7_RHOVA Length = 354 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 130 NGVLSVSGKVRNIVNM-KPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQ 188 G + S +R + PA +I ++S S L+++L E ++ IL D R Sbjct: 249 RGWQTWSALIRRRLRTLDPASWPTFDEIAAEFHLSSSTLRRRLDDEGLSYRVILDDLRRD 308 Query: 189 HAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 A +L+ R + ++ IA G+ +S F AF+K G SP Sbjct: 309 LAISLLSRTDATIQSIAFDLGFTESSAFHRAFKKWTGVSPGNYR 352 >UniRef50_P0A2T2 Virulence regulon transcriptional activator virF n=9 Tax=Enterobacteriaceae RepID=VIRF_SHIDY Length = 262 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 10/228 (4%) Query: 13 AFNANILDKDYAFSDGEILMVDNAVRTHFEPYERH----FKEIGFTENTIKKYLQCTNIQ 68 + + ++ +G+I ++ ++ + + F+ I N + ++ Sbjct: 28 SMTVSSGNETLTIDEGQIAFIERNIQINVSIKKSDSINPFEIISLDRNLLLSIIRIMEPI 87 Query: 69 TVTVPVPAKFLRASNVPTGLLNE---MIAYLNSEERNHHNFSELLLFSCL--SIFAACKG 123 ++ R N LL+E I S + ++ +CL ++ Sbjct: 88 YSFQHSYSEEKRGLNKKIFLLSEEEVSIDLFKSIKEMPFGKRKIYSLACLLSAVSDEEAL 147 Query: 124 FITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILL 183 + ++ LS S ++R IV W+L DI + L +SE ++K+L+ E+ TF QILL Sbjct: 148 YTSISIASSLSFSDQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILL 207 Query: 184 DARMQHAKNLIRVEGS-VNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 D RM HA L+ S +N ++ G +S SYFI F +++G +PK+ Sbjct: 208 DIRMHHAAKLLLNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKF 255 >UniRef50_C6JC64 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JC64_9FIRM Length = 276 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 7/161 (4%) Query: 77 KFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVS 136 ++L P L+ M N R E L S F ++ + + + S Sbjct: 99 EYLLKPVSPNELMETMH---NVMHRLEQKRFEQKLLSQKDEFGEKHDAVSQVNSLFVQSS 155 Query: 137 GKVRNI---VNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT-TFSQILLDARMQHAKN 192 G +++I + L D+ + + SES + +K+K+E TF IL R+ A + Sbjct: 156 GAIKSILTDIAQNYEQNISLADLAEKYHFSESYISRKIKKETGYTFVDILNGIRLMCAAS 215 Query: 193 LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 L++ ++ + E+ G+ YF F+K FG +P E Sbjct: 216 LLKTGEKISDVCEKTGFNDQHYFSQLFKKTFGCTPSNYRSE 256 >UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=Alphaproteobacteria RepID=B6RAA0_9RHOB Length = 263 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 9/148 (6%) Query: 86 TGLLNEMIAYLNS-EERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVN 144 L+ E +A + E H E L++ + L + KVR+++ Sbjct: 119 LALMKETLANTSLPEALRQHRLLEPLIW-------LRHIGVNLSKPDTDNPLSKVRSLIE 171 Query: 145 MKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKI 203 ++ W+ D+ +SE+ ++ L + F+++LL R++ L++ ++ I Sbjct: 172 TDLSYAWRATDVASHFAMSEATFRRWLAKSGHGFAKVLLHTRLEKGLTLLQSTHEPISNI 231 Query: 204 AEQCGYASTSYFIYAFRKHFGNSPKRVS 231 A CG+ + S+F AF+K FG PK + Sbjct: 232 ALDCGFNTPSHFSEAFKKRFGIRPKEIR 259 >UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK40_BACSK Length = 407 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNL 193 ++ +V V L+++ D L+++ + L K+ K+E FS + RM A L Sbjct: 307 LAVRVYEYVEAHFFEQPSLQEVADHLFLNAAYLSKRFKEETGEKFSDYIHRLRMDRAVEL 366 Query: 194 I-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + V++IA++ GY SYFI F++ F +P+ Sbjct: 367 LAETNMKVSQIAKKLGYKDASYFIKVFKREFHMTPQEFRSR 407 >UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW9_9GAMM Length = 350 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 1/105 (0%) Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 N V+G VR + L+ + + L++S LK++L+ T++ QI +R + Sbjct: 242 NVRNDVAGMVRLQIQDWEGRLPTLEQVAEQLHMSPRTLKRRLQTAGTSYQQIKDSSRFRR 301 Query: 190 AKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 A + + + S+ IAE GY+ S F AF+ +P + Sbjct: 302 AIHQLEATDSSLESIAELLGYSDASNFTKAFKSWAEMTPSEFRQR 346 >UniRef50_A6Y0W0 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrionaceae RepID=A6Y0W0_VIBCH Length = 328 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 2/107 (1%) Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDAR 186 ++N L+ + ++ +P W + ++C + +E+ K+ K TTFS++L R Sbjct: 217 ISNRTLNRIRQAHAMMASEPEKNWSIGELCRQVGTNETSFKRGFKLLFNTTFSKLLQHTR 276 Query: 187 MQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 M+ A ++R + + IA Q GY S S+F F++HFG +P + K Sbjct: 277 MKIAAEVLRHSDQPIIDIAYQVGYTSPSHFSKLFKQHFGVNPLQYRK 323 >UniRef50_A5GD53 Transcriptional regulator, AraC family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GD53_GEOUR Length = 291 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 85/245 (34%), Gaps = 24/245 (9%) Query: 6 SVIFIHHAFN-ANILDKDYAFSDGEILMVD------NAVRTHFEPYERHFKEIGFTENTI 58 S + ++ I K G+I+ +D Y F + E + Sbjct: 56 SFVLTFDSYTRLAIGGKTVLSQPGQIMAIDPDAVHHEMTADETPRYIAIFIDRDLFEKEL 115 Query: 59 KKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC---- 114 +Y P F + P + ++ +E E LL + Sbjct: 116 GRYPSIR---------PRPFRFRTFTPGREMMGLLKEFMNEAEARLPAREPLLAAIGTRI 166 Query: 115 -LSIFAACKGFITLLTNGVLSVS-GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 ++ A G IT + V +V + + + +S S + K Sbjct: 167 VHALIRAAHGIITPDASIGNRVEIHRVIEYIQTHAGKKLSIGQLAAVAAMSTSHFSRIFK 226 Query: 173 QE-QTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 +E L R++ A+ L+R E SV +A CG+AS S+F +FR+ +G SP Sbjct: 227 RETGHPPLAYLNRVRLEQARKLLRTGECSVTSVALSCGFASPSHFTDSFRRFYGQSPTDF 286 Query: 231 SKEYR 235 K Y+ Sbjct: 287 LKSYK 291 >UniRef50_UPI000196B709 hypothetical protein CATMIT_00139 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B709 Length = 269 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 13/160 (8%) Query: 86 TGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA------ACKGFITLLTNGVLS----V 135 + ++N+ Y +EE + + + I+A C +I+L TN + + + Sbjct: 109 SEIINKSKPYFENEEELRQLVTNITILDEDQIYAFAHVCDICAKYISL-TNRIQAKNDHL 167 Query: 136 SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDARMQHAKNLI 194 + +++ + + P + +CD + S L K + TT + LLD R++ A L+ Sbjct: 168 AQEIKQYLIANYSKPITIDQLCDFFFCSRGTLLTHFKSKYNTTIHKFLLDYRLKKAAELL 227 Query: 195 -RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + +V +IA QCG+ +YF F+K + SP + Sbjct: 228 TNKKQTVKEIAYQCGFEDPNYFCKVFKKEYQCSPLEFKNK 267 >UniRef50_C6D477 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D477_PAESJ Length = 305 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 76/204 (37%), Gaps = 13/204 (6%) Query: 45 ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHH 104 E+G + +Y + T++ V P +L + P L Sbjct: 103 PDWIGELGV---WLSQYCRDTDVLHVLDGNPGTYLFLRDTPLELAPSFEQLHREFTEESW 159 Query: 105 NFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNI--------VNMKPAHPWKLKDI 156 F +L L + + + +G R+ +N A P K++ + Sbjct: 160 GFETTVLAGLLQLLTRISRKLKTQDSTGDQTTGSTRHSEFVSIVEHINRHIAEPLKMEQL 219 Query: 157 CDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSY 214 D IS+ + +Q+ FS+ + + R++ A L+ SV IA++ GY ++ Sbjct: 220 ADQAGISQRHFIRLFRQQTGMGFSEYVQNKRVELACQLLTGTSQSVADIAKKVGYQDPAH 279 Query: 215 FIYAFRKHFGNSPKRVSKEYRCQS 238 F FRK G +P + E +S Sbjct: 280 FREVFRKVMGITPSQYRPEASNKS 303 >UniRef50_Q1ZVK9 Transcriptional regulatory, AraC-like protein n=2 Tax=Photobacterium RepID=Q1ZVK9_PHOAS Length = 259 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 1/132 (0%) Query: 104 HNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYIS 163 N + ++ + A L + LS K+ N P ++ +CD +S Sbjct: 125 PNVQKHIVNALFEHLANSGYLHQLFSMRNLSWRDKLTQYFNDDPKANHSIESVCDHFGLS 184 Query: 164 ESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKH 222 +S L ++LK E T F +L + RM +A +L++ + S ++A CGY S + F F+ Sbjct: 185 KSTLIRRLKDENTQFRDVLAELRMGYALSLLQTKPYSQIELAHLCGYKSEARFAQRFQHQ 244 Query: 223 FGNSPKRVSKEY 234 FG S K+ K + Sbjct: 245 FGLSLKQYQKTF 256 >UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVY3_9CLOT Length = 529 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 62/150 (41%), Gaps = 11/150 (7%) Query: 84 VPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIV 143 LL+ ++A E + ++ + + + +G+++ + ++ + Sbjct: 382 RDQELLSALLAAGEEETARQKFVAAMVELAQAVVIKNQE------PDGIIT---RAQDYI 432 Query: 144 NMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVN 201 L+++ + IS K K+E F++ L R++ AK L+ E S+ Sbjct: 433 RQNFRKDISLEEVARTVGISPYYFSKLFKEEAGMNFTEYLTGIRIETAKRLLSERELSIK 492 Query: 202 KIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 ++ GYA+ +YF F+K G +P Sbjct: 493 QVCVDSGYANPNYFSRIFKKWVGITPTEFR 522 >UniRef50_Q0VSF4 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VSF4_ALCBS Length = 338 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 12/161 (7%) Query: 72 VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNG 131 +PVP F A N + M L + + + C A K LL Sbjct: 188 MPVPVYFDCAYNQMRFPVERMKYTL---QFADPRLARMAADQCEQEMATIKLPPPLL--- 241 Query: 132 VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAK 191 G+VR I+ ++++ L++S LK+KL+Q T++ ++L R A Sbjct: 242 -----GQVRRIILGGGGRFPGVEEVAGELHMSSRTLKRKLQQLGTSYQEVLDGLRKGLAV 296 Query: 192 NLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 + + E +V++IA GY+ S F AFR+ SP Sbjct: 297 EYLTQSEKTVDEIAMTLGYSDASNFARAFRRWTARSPSDYR 337 >UniRef50_D1PRZ9 DNA-bindng response regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PRZ9_9FIRM Length = 248 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 2/98 (2%) Query: 140 RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VE 197 ++ + ++D+ D L +S S L + K+E + S + +++ AKNL+R + Sbjct: 145 KDYIYAHIKERITIEDLADELGVSPSYLSRLFKKETGMSVSAYIRQQKIEIAKNLLRFSD 204 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 S+ IA Q ++S S+FI FR+ G +PK+ E R Sbjct: 205 SSLIDIANQLAFSSQSHFIQQFREVTGMTPKKYRDESR 242 Score = 41.0 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Query: 194 IRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 I+ ++ +A++ G S SY F+K G S ++ + + Sbjct: 152 IKERITIEDLADELG-VSPSYLSRLFKKETGMSVSAYIRQQKIE 194 >UniRef50_A9FWP2 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWP2_SORC5 Length = 304 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI- 194 +V ++ KPA W ++ + +S + L ++ E + L + RMQ A L+ Sbjct: 189 ARVLRLMQEKPAERWSVEALAKAAGLSRAALARRFLAELGVPPLRYLAELRMQRAAELLA 248 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 +GS+ +A + GY S F AF++H G +P + R + Sbjct: 249 EGDGSLAAVAAEVGYDSEFAFSRAFKRHTGEAPGAFRRRSRSEG 292 >UniRef50_C6J2H9 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2H9_9BACL Length = 535 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 18/172 (10%) Query: 80 RASNVPTGLLNEMIAYLNSEERNHHNFSEL-------LLFSCLSIFAACKGFITLLTNGV 132 R + L++ ++ +L E R H L +S+ ++L+ + Sbjct: 359 RQACASEKLMHYLLIHLLREMRELHMLPREQEEGLWKRLREPMSLKELLSIIVSLIEHAR 418 Query: 133 LSVSGK---------VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQIL 182 S+S K +N + + ++DI D L IS S K TF + L Sbjct: 419 SSLSAKKSTELLMMSAQNYIQNHLGRDFGIEDIADYLGISSSYFCLLFKNHFGETFVEYL 478 Query: 183 LDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 RM+ AK L+R E S+ +I GY YF F+K+ G +P ++ Sbjct: 479 TKQRMEMAKCLLRTSERSIAQIGSSIGYQERRYFTKVFQKYTGMTPSDYRQK 530 Score = 42.6 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 35/151 (23%) Query: 114 CLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESL----LKK 169 I K +I L S K+ + + + L+++ L++ L K Sbjct: 342 LDRIAGELKSYIGGLDERQACASEKLMHYLLIHL-----LREM-RELHMLPREQEEGLWK 395 Query: 170 KLKQEQTTFSQIL-------------------LDARMQHAKNLIRV----EGSVNKIAEQ 206 +L+ E + ++L + M A+N I+ + + IA+ Sbjct: 396 RLR-EPMSLKELLSIIVSLIEHARSSLSAKKSTELLMMSAQNYIQNHLGRDFGIEDIADY 454 Query: 207 CGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 G +S SYF F+ HFG + + R + Sbjct: 455 LGISS-SYFCLLFKNHFGETFVEYLTKQRME 484 >UniRef50_C6CUY4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CUY4_PAESJ Length = 541 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 3/132 (2%) Query: 104 HNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYIS 163 H +L ++ +I + K + + S+ KV+ ++ L I +Y++ Sbjct: 408 HTVDDLRTWTARTIDSYRKSVNSEDKDSRSSIIRKVQEFIHNHLEQA-SLHSISTHVYLN 466 Query: 164 ESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRK 221 S L K K E S+ LL ARM+ + +L+ + + + +I+ GY SYFI F+K Sbjct: 467 PSYLSKIYKTETGEGISEYLLRARMEKSADLLAQTDEKIYEISVMLGYQKPSYFIQLFKK 526 Query: 222 HFGNSPKRVSKE 233 HFG +P+ + Sbjct: 527 HFGITPQEYRNK 538 >UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYL2_9BACL Length = 530 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 2/110 (1%) Query: 129 TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDARM 187 T S+ ++ ++ + + L I + + + S L K + +F Q L D RM Sbjct: 420 TREEPSIVEAMKEMIELNYMNDLNLSQIAEQYHYNLSYLSDLFKTKTGKSFLQYLTDVRM 479 Query: 188 QHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 A L+ S++ IAE G+++ SYF F+K FG SP ++ + Sbjct: 480 NKAVQLLDETPLSLSDIAELTGFSNASYFSTKFKKVFGISPSEYRQKDKN 529 >UniRef50_C6D151 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D151_PAESJ Length = 545 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 3/161 (1%) Query: 77 KFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVS 136 + L N+ + L A + + E+ L + AAC+ T V ++ Sbjct: 384 QLLLELNMQSEELESAEAAVWESLLDRETLGEMRLILEAYLLAACERIGEKRTGKVANLV 443 Query: 137 GKVRNIVNMKPAH-PWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI 194 +VR I++ ++ + DI ++++ + + KQE T + + RM+ AK ++ Sbjct: 444 ERVRAIIDRDYSNGSLTVTDIGREVFLTPTYVSLLYKQETGQTVGEYMTQVRMEKAKEML 503 Query: 195 RV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 R + I GY SYF F+K G +P ++Y Sbjct: 504 RDPQYKFYDICYAIGYTDPSYFTKLFKKMTGVTPSGYREKY 544 >UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Shewanella RepID=A6WTM9_SHEB8 Length = 252 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 2/124 (1%) Query: 111 LFSCLSIFAACKGFITLLTNGVL-SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKK 169 + L + K ++ L SV+ ++++ PA PW+ ++I D L++S + L++ Sbjct: 127 YLAALLLSLPDKRSVSWLYGHTQRSVTQAALALMSVSPAAPWQQEEIADKLHMSTASLRR 186 Query: 170 KLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 KL E T+F Q+L++ R+ H +++ + ++A CGY S F F++ FG +P Sbjct: 187 KLALEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQFGLTPA 246 Query: 229 RVSK 232 + Sbjct: 247 AYRR 250 >UniRef50_B4SMK6 Transcriptional regulator, AraC family n=3 Tax=Stenotrophomonas RepID=B4SMK6_STRM5 Length = 317 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 66/156 (42%), Gaps = 8/156 (5%) Query: 84 VPTGLLNEMIAYLNS--EERNHHNFSELLLFSCLSIFAACKGFIT----LLTNGVLSVSG 137 +P LL + +S ++ + E + L++ + T L G Sbjct: 155 IPHTLLPVLGQLFDSPWQDGIDALWREGVALQLLAVGLQAEDLQTDQVRALRAGQRERLE 214 Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQILLDARMQHAKNLIRV 196 +VR ++ P+H L ++ +S S L++ +Q + L + RM+HA+ +R Sbjct: 215 RVRAYLHDDPSHTHSLVELAQLACMSPSSLRRHFAQQYGCSVFDYLHEQRMRHAEQGLRE 274 Query: 197 E-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 + +V + A GY S F AFRK FG P R Sbjct: 275 DGWTVEQAAAASGYRHPSNFAAAFRKRFGLVPSRWR 310 >UniRef50_B7GW45 Bacterial regulatory helix-turn-helix protein, AraC family protein n=13 Tax=Acinetobacter RepID=B7GW45_ACIB3 Length = 264 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 79/196 (40%), Gaps = 6/196 (3%) Query: 41 FEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEE 100 PY +H Y+ + Q +P A L S + LL+ + E Sbjct: 74 LPPYTKHSGINRNEVTHATLYVHESLCQK--LPQKAGILLTSPLVPALLDHLRQNPQDET 131 Query: 101 RNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCL 160 + + +L L ++ + L+ K+ N ++ PA L+++ + + Sbjct: 132 QVEYIRLLQVLLDQLIQAELVGSYLPTTDHPALA---KILNDLHQCPADNSTLQELAERI 188 Query: 161 YISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAF 219 ++E L + ++E + + ++ A ++ ++ IA GYAS S FIY F Sbjct: 189 NMTERTLARYSQKELGMSLHEWRQRLKVMKAMTMLNQGKTIESIAFDLGYASASAFIYMF 248 Query: 220 RKHFGNSPKRVSKEYR 235 ++ G +P + K Y+ Sbjct: 249 KRWMGFTPDQFRKLYQ 264 >UniRef50_C9Y4B2 Putative uncharacterized protein n=1 Tax=Cronobacter turicensis RepID=C9Y4B2_CROTZ Length = 312 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 5/117 (4%) Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTF 178 A G + LL + L+ + + V P HPW L+ + ++S S + + T Sbjct: 196 AAPGMLPLLADKRLAPA---VSAVLANPEHPWTLESMAARCFLSRSTFARHFASRYPLTP 252 Query: 179 SQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 L RM A L+ R + ++ ++AE CGY + + F AF+ +G +P + +++ Sbjct: 253 QGWLNQVRMARAARLLEREQRAIGRVAEACGYLTQAAFSKAFKSAWGVTPGQFRQQH 309 >UniRef50_C6IYS4 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYS4_9BACL Length = 527 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDAR 186 L G S + + + PA L+ + +++ S L + K+E +TF + R Sbjct: 411 LGEGQASHVQRAKAYMESCPAEELSLQQVAAYVHLHPSHLSELFKKETGSTFGYYVTALR 470 Query: 187 MQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 M+ A L+ V++IA GY YF F+KH G +P +E Sbjct: 471 MRRAMELLAVSPAKVSEIAGLTGYEDVKYFSRLFKKHTGKTPSEFREE 518 >UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C5C3_9GAMM Length = 275 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%) Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 S+S ++ ++ ++ +C +SES L++KLK E T I R+ +L Sbjct: 164 SLSNQIHLVIANDQELDVTIESLCQRFAMSESTLRRKLKAEGITLQDIKDQVRLGQGLHL 223 Query: 194 IR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 ++ S+ IA CGY S S F F+ FG +P ++ K Sbjct: 224 LQSTRKSIGMIANVCGYQSQSRFSERFKYRFGLTPSQLRK 263 >UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2F1F Length = 288 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 2/174 (1%) Query: 62 LQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC 121 + V + + LL ++I E+ + ++LL LS + Sbjct: 109 FKPMRSSHVILTHSLPYSEIYAEIISLLEKLIYINKYEKGFYQLDCKILLLEILSNILSI 168 Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQ 180 + T+ + ++ VN L D+ D ++SE + + K+ TFS+ Sbjct: 169 PDILVKKTSNASDMRREIITYVNDNYLEKITLSDLADEFHMSEKYISRYFKKHFNITFSK 228 Query: 181 ILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + R+ +AKNL+ S+ +A G+ + SYFI +F++ +G +P + Sbjct: 229 YVNHMRLLYAKNLLDTTNISITDVALSSGFPNVSYFIRSFKESYGKTPFSYRTD 282 >UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein n=4 Tax=Acinetobacter RepID=B2I0Q2_ACIBC Length = 270 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 12/141 (8%) Query: 104 HNFSELLLFSCLSIFAACKGFITLLT-----------NGVLSVSGKVRNIVNMKPAHPWK 152 H F + L + S F K + L N S+S +V+ +++ + Sbjct: 125 HQFIDFSLVAPPSAFKFRKRELLELIYYSGYTAIAKLNMNKSLSERVQTLISYHLSTELT 184 Query: 153 LKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYAS 211 + I L++S S L++KLK E + I R+ H +LI+ S+ IA +CGY S Sbjct: 185 AEFIAAQLFMSSSTLRRKLKSEGNSIQDIRNRVRLGHGLHLIQTTNNSIGNIAFECGYQS 244 Query: 212 TSYFIYAFRKHFGNSPKRVSK 232 S F F+ FG +P+ + K Sbjct: 245 QSRFTEQFKNLFGITPRELRK 265 >UniRef50_C6J1Q8 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J1Q8_9BACL Length = 542 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 12/144 (8%) Query: 108 ELLLFSCLSIFAACKGFITLLTNGVL----------SVSGKVRNIVNMKPAHPWKLKDIC 157 E LL L + ++T L N + SV+ +++ ++ D+ Sbjct: 392 EQLLAQSLHSIEDMQEYVTYLVNTAMAYRDFAAEPKSVAEEIKQYIHAHYGDELTRNDLA 451 Query: 158 DCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYF 215 + +Y++ L + K+E + ++ R+ AK L+ SV +A Q GYA+ SYF Sbjct: 452 EVVYLNPDYLARLFKKETGISLGSYVIQVRISVAKQLLETTKLSVYAVANQVGYANYSYF 511 Query: 216 IYAFRKHFGNSPKRVSKEYRCQSH 239 F++ G +P K R + Sbjct: 512 SKLFKQEVGVTPNEYKKNPRTAAR 535 >UniRef50_A4Y0K0 Transcriptional regulator, AraC family n=8 Tax=Pseudomonas RepID=A4Y0K0_PSEMY Length = 337 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Query: 131 GVLSVSGKVRNIVNMK-PAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 V S S +VR+ + + P + I L++S L++ L +E T++ +L D R Sbjct: 229 QVASYSERVRSCLEARLPDGEPSAERIAQALHLSLRSLQRHLAEEGTSYEALLGDTRHAL 288 Query: 190 AKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 A +R S+++IA G++ +S F AF++ G +P + R Sbjct: 289 ALRHMRDPRCSISEIAYLLGFSDSSSFGRAFKRWTGQTPSQYRDGSR 335 >UniRef50_C6LM61 Putative raffinose operon transcriptional regulatory protein RafR n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LM61_9FIRM Length = 252 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 95/248 (38%), Gaps = 16/248 (6%) Query: 16 ANILDKDYAFSDGEILMVDNAVRTHFEP---YERHFKEIGFTENTIKKYLQCTNIQTVTV 72 + + Y G++ ++ V +E ++ IGF + ++ L+ T Sbjct: 9 LEMGEAHYTLEKGDVFLIPEGVEAWYEADKETPWSYRWIGFEGVSARECLESAG---FTP 65 Query: 73 PVPAKFLRASNVPTGLLNEMI--AYLNSEERNHHNFSELLLFSCL-----SIFAACKGFI 125 P + +R + G +++M+ L E N +L+F+ L A + Sbjct: 66 QKPVRKVRCLDKVGGYIDQMLKCHQLYYENELKRNALLMLVFAELITDNRKNLAGMGKYP 125 Query: 126 TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLD 184 + +N + ++ ++ D + ++ S L ++ + + L+ Sbjct: 126 SEHRYPSSVYVEHAIEYINENYSKRLRINELADYIGVNRSYLTSSFQENIGCSPREYLMK 185 Query: 185 ARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMN 243 RM+ AK L++ + VN++A GY F F+ G SPK KE + + G Sbjct: 186 LRMEKAKTLLKNPDIQVNEVAAMVGYTDPLAFSKIFKSRTGRSPKEY-KEEKSRLVVGKK 244 Query: 244 TGNTMNAL 251 G+ + Sbjct: 245 KGDCTGNV 252 >UniRef50_A5Z7W7 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7W7_9FIRM Length = 334 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 10/229 (4%) Query: 11 HHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTNI 67 H I K Y+ S G IL+ + H+E + + FT + + L N+ Sbjct: 91 HGTIYYYIDKKQYSISAGGILIYKPSELLHYEFFLKDAPDIYWVHFTGDNVDNILGELNL 150 Query: 68 QTVTVPVPAKFLRASNVPTGLL-NEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 T F+ + +++I+ L + + + + S +L+ L + IT Sbjct: 151 STK-----HAFMGTICPEYDTIFDKIISELLNRKLHFMDISSILMLELLYTISRDICTIT 205 Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQILLDA 185 +++ + KV I N + + I L S S L K K + L + Sbjct: 206 YISSKNDLILEKVLEIFNTNYPNKISITSIAKELNYSSSWLSKTFTKHFGLSPKAYLTNL 265 Query: 186 RMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 R++ AK+++ S+ ++AEQ G+ YF F G +P + +++ Sbjct: 266 RIEKAKSMLLSTMSIRQVAEQTGFPDQMYFSRVFTNAEGITPSQYRQKH 314 >UniRef50_B8FUQ5 Transcriptional regulator, AraC family n=2 Tax=Desulfitobacterium hafniense RepID=B8FUQ5_DESHD Length = 427 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 2/143 (1%) Query: 91 EMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHP 150 +++ + N E++ F + + L LS+ R+ + A P Sbjct: 281 TILSSFYKKLENMERVEEIIYFIKQIVDEFLENIFILADKKHLSLVKDARSFILHNHAQP 340 Query: 151 WKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCG 208 + D L+IS S L + +Q+ TF+ L R++ A L++ E SV +A G Sbjct: 341 LTIADAAQHLFISPSHLSRLFRQQLDCTFNDYLTRVRVEKAVELLKKPEFSVKDVALAVG 400 Query: 209 YASTSYFIYAFRKHFGNSPKRVS 231 + + S+F FRK+ G +P Sbjct: 401 FQNQSHFAKVFRKYIGVTPLVYR 423 >UniRef50_Q8XYE5 Probable transcription regulator protein n=1 Tax=Ralstonia solanacearum RepID=Q8XYE5_RALSO Length = 303 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 2/99 (2%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLI- 194 + R ++ + H W L ++ + ++E LK+ + + L + RMQ A +L+ Sbjct: 203 DRARELMLARLHHNWSLAELAQAVNLNERKLKEGFRMLYGNSVHAYLQEKRMQAAAHLLT 262 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + E S+ ++ Q GYA+ S+F FR++FG SP+ +++ Sbjct: 263 QTELSITEVVLQTGYANPSHFSKLFRRYFGMSPREYARQ 301 >UniRef50_C4ZBY2 Two-component response regulator n=4 Tax=Clostridiales RepID=C4ZBY2_EUBR3 Length = 534 Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 3/108 (2%) Query: 130 NGVLSVSGKVRNIVNMKP-AHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARM 187 N S+ ++ V+ + L D C L +S S K+E ++F + L D RM Sbjct: 422 NSKKSLIDSAKDYVHRNYRSVDLGLDDTCKELGVSNSYFSSLFKKETGSSFVEYLTDYRM 481 Query: 188 QHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 A ++ + IA+ GYA +YF Y F++ +G SP R EY Sbjct: 482 DKAARMLVETDDKSYVIAQNVGYADPNYFSYVFKRKYGVSPSRYRTEY 529 >UniRef50_Q2RGN4 Two component transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RGN4_MOOTA Length = 548 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 2/131 (1%) Query: 104 HNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYIS 163 N +++ + A S+ + + + L+++ +Y+S Sbjct: 407 DNLADMRERILERLMALVAQVAETREQRNSSLIDRASKYIEANFSQDLTLEEVARQVYLS 466 Query: 164 ESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRK 221 K KQ F L R++ A+ L+ + V +IA + GY YF F+K Sbjct: 467 PCYFSKLFKQFKGLNFIDYLTKVRLKAARELLLNTKLPVAEIATRVGYRDARYFGQVFKK 526 Query: 222 HFGNSPKRVSK 232 G +P K Sbjct: 527 QEGYTPSVFRK 537 >UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulator ybcM n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFJ5_YERRU Length = 275 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDAR 186 L + +V+ + ++++ + P+ W + + + L++S S + L E +F QIL D R Sbjct: 151 FLDSSDNTVTARCQDLLILSPSARWSARTVAEQLHMSVSTFHRHLAAEGGSFQQILDDVR 210 Query: 187 MQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 + +A N I+ + +IA GY S F F+K + +P+ + + + + Sbjct: 211 LGNALNAIQTTSKPIGEIARDNGYQCPSRFTSRFQKRYQITPRALRQAIQAKDRAD 266 >UniRef50_UPI0001788F54 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F54 Length = 523 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI- 194 ++ + A P L + + + S L FS+ L R++ A L+ Sbjct: 417 DRLLEYIQDHYADPITLTGVARQFHFNASYLSSYFASYNGEGFSEYLNKIRLEKAMELLL 476 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 E ++++I+ GY+ SYF F+K G SP + ++ Sbjct: 477 TTELTISEISASVGYSDQSYFTKVFKKQTGISPSQFRRQ 515 >UniRef50_C0ZD41 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZD41_BREBN Length = 341 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 2/111 (1%) Query: 126 TLLTNGVLSVSGKVRNIVNMKP-AHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLD 184 +L G SV+ KV+ I+ ++ + L +S+ L+++L E TTF Q+L Sbjct: 219 SLDEQGSHSVAEKVKWILKRSLTGGRLDIQAVASELGMSDRTLQRRLADESTTFKQLLTQ 278 Query: 185 ARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 AR + A+ + + + ++A GY + F AFR G++P EY Sbjct: 279 ARHEQAREYLADPKLDIKEVAFLLGYEDQNSFYRAFRLWEGDTPSNWRSEY 329 >UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=Dickeya RepID=C6CEQ2_DICZE Length = 282 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 1/108 (0%) Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLD 184 + L G L+ S +VR +V +P W + L + S L ++L QE T + + D Sbjct: 174 VVLAPPGALNWSERVRRLVAQRPYDHWSASRVAQALSTTASTLNRRLAQEGCTITTCVRD 233 Query: 185 ARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 R++ A L++ E V IA GY S S F AFR+ FG P + Sbjct: 234 TRLETAMVLLQSSERPVAAIALDVGYESHSKFTAAFRRRFGVVPSALR 281 >UniRef50_C6CWF4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWF4_PAESJ Length = 451 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 52/122 (42%), Gaps = 3/122 (2%) Query: 117 IFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-Q 175 + +A + ++V K + + + L++ + ++++ K KQ+ Sbjct: 330 VISALQRIREQREQQTINVMDKAKQYIGLHFTEELSLEETAEHVHLNPHYFSKVFKQQVG 389 Query: 176 TTFSQILLDARMQHAKNLIRV--EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 TF L R++ AK LI E ++ ++ + GY +YF F++ G +P + Sbjct: 390 ATFIDYLTGLRIEKAKQLISSADELALKEVCFEVGYKDPNYFSRVFKRVTGLTPTEYRSQ 449 Query: 234 YR 235 + Sbjct: 450 AK 451 >UniRef50_B0P6G3 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6G3_9FIRM Length = 532 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 114 CLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHP-WKLKDICDCLYISESLLKKKLK 172 CL I + +N ++ + + + P ++ +CD L++S + K Sbjct: 407 CLRISELIRRE---RSNSTRGIAEGAKQFIAEHFSDPDISVEMLCDHLHVSPAYFSTLFK 463 Query: 173 QE-QTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 +E +F L + RM A L+ E +I+ + GY +YF Y F+K FG SP + Sbjct: 464 KETGMSFVAWLTNVRMDEAVKLLSTTEDKTYEISLKVGYTEPNYFSYVFKKQFGMSPTKY 523 Query: 231 S 231 Sbjct: 524 R 524 >UniRef50_C6D8S9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D8S9_PAESJ Length = 534 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQ 188 V + KV+ + H ++I +Y++ + L + ++E + + ++D RM Sbjct: 424 KDVSNTIAKVQGYIEENLQHDLNREEIARHVYLNPAYLSRLFRKETGKSLTDYMVDRRMF 483 Query: 189 HAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 + ++ ++ IA GYAS S+F F+K G +P+ K+Y+ Sbjct: 484 RSIRELKLTNHKISDIAISVGYASFSHFSKQFKKSTGMTPQDYRKKYQN 532 >UniRef50_A7MK74 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=A7MK74_ENTS8 Length = 304 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 5/116 (4%) Query: 121 CKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFS 179 +G + LL + L+ + + V P PW L+ + ++S + + + T Sbjct: 189 AQGMLPLLADKRLAPA---VSAVLTNPEQPWTLESMAARCFLSRATFARHFASRYPLTPQ 245 Query: 180 QILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 L RM A L+ R + ++ ++AE CGY + + F AF+ +G +P + +++ Sbjct: 246 AWLNQVRMARAARLLEREQDAIGRVAEACGYLTQAAFSKAFKNAWGVTPGQFRQQH 301 >UniRef50_C6D3S3 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3S3_PAESJ Length = 538 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 2/110 (1%) Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQ 188 SV + + ++ A +DI +Y++ L + K+E + S LL R++ Sbjct: 422 EHSPSVVEQAKTYIHQHLAEEISREDIASHVYLNPDYLTRIFKRETGMSISDYLLQQRLR 481 Query: 189 HAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 A L+ + +V+ +A + GYA+ S+F F+K+ G +P + + Sbjct: 482 IAAELLANTDLAVSAVASRIGYANFSHFSRIFKKYMGINPLEYRQSQESR 531 >UniRef50_D0SI20 AraC-type DNA-binding domain-containing protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SI20_ACIJU Length = 353 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 2/102 (1%) Query: 133 LSVSGKVRNIVNMKPAHPW-KLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA- 190 S+S ++R + ++P W +LKDI + +S + ++++LKQE ++ Q+ + R A Sbjct: 238 NSLSLQIRRQLILQPPSEWAELKDIAQQMNMSTATIQRRLKQEGVSYQQLKNNIRCDIAI 297 Query: 191 KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + L + S+ I++ + S F AF+K G SP K Sbjct: 298 ERLSKTNDSIQSISDDLNFHDPSAFHRAFKKWSGVSPGSYRK 339 >UniRef50_A4XJL7 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJL7_CALS8 Length = 291 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 6/159 (3%) Query: 78 FLRASNVPTGLLNEMIAYLNSEERNHHNFSELL-LFSCLSIFAACKGFITLLTNGVLSVS 136 F + + P + ++ N +H +L + ++ + I + LS Sbjct: 123 FKKIKDQPLDIEAARRSFFNLTHIDHEKLQSVLDMMHIVAKYILDSEMIRI---SSLSSI 179 Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR 195 K+ + L D+ +Y+S + L K++ TF + L++ R++ +K LI Sbjct: 180 EKIIEYIKNHYMEDITLDDLAKMVYLSPTYLSYLFKKQLGITFKEYLINIRLKKSKELIE 239 Query: 196 V-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + S+ +I++ G +YF F+K FG SP K+ Sbjct: 240 TTDLSIGEISKMVGIEDQNYFSRLFKKKFGVSPLNYKKD 278 >UniRef50_A1TVA8 Transcriptional regulator, AraC family n=17 Tax=Proteobacteria RepID=A1TVA8_ACIAC Length = 366 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 8/149 (5%) Query: 86 TGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNM 145 LL YL+ + + L+L L + LL +VR + Sbjct: 203 QALLRFDARYLDLPLQRDEDALRLMLQRALPLTVRQYRRDRLL-------VQRVRQALAH 255 Query: 146 KPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RVEGSVNKIA 204 P + I L++S L ++L++E + + +AR Q A++L+ R + V +A Sbjct: 256 APELSHSAQTIAAALHVSARTLHRQLREEGASLQALKDEARQQRARDLLQRTDRPVKAVA 315 Query: 205 EQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 G+AS F+ AFR+ G SP ++ Sbjct: 316 RAAGFASEKSFMRAFRQWTGMSPAEYRRQ 344 >UniRef50_A6NRT4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRT4_9BACE Length = 534 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 6/142 (4%) Query: 98 SEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAH-PWKLKDI 156 S+ + LL CL + T+ + + + A ++ + Sbjct: 396 SDFHSPEELGRWLLERCLKLRELLGRQ---RTDSAWKTVEQAKAFIAANYADCDLSVESM 452 Query: 157 CDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSY 214 C L++S + K+E +F+ + + RM A ++R + IAE+ GY +Y Sbjct: 453 CAHLHLSATYFSALFKRETGQSFTAYVTELRMDQAARMLRDTDEKTYLIAEKTGYTDPNY 512 Query: 215 FIYAFRKHFGNSPKRVSKEYRC 236 F Y F++HFG +P + R Sbjct: 513 FSYVFKRHFGVTPSKYRAGQRA 534 >UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escherichia coli RepID=PERA_ECO27 Length = 274 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 87/164 (53%), Gaps = 2/164 (1%) Query: 79 LRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFI-TLLTNGVLSVSG 137 + +N+ LN + + + + +N + LS F + +L+ S+ Sbjct: 109 IFTANLNEMQLNIVSNIITDIKYSGNNKKIFKILYLLSFFNDYNDIVNVILSASSKSIVD 168 Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-V 196 +V ++ + + WKL D+ +++S+S L+K+L +E TF +I+LD +M+HA +R Sbjct: 169 RVIKVIELDISKNWKLGDVSSSMFMSDSCLRKQLNKENLTFKKIMLDIKMKHASLFLRTT 228 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 + ++++I+ G+ STSYFI F++++ +PK+ + Y T Sbjct: 229 DKNIDEISCLVGFNSTSYFIKVFKEYYNTTPKKYNGVYSITQGT 272 >UniRef50_UPI0001692C08 transcriptional regulator (AraC/XylS family) protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692C08 Length = 288 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 88/244 (36%), Gaps = 17/244 (6%) Query: 2 SLVCSVIFIHHAFN----ANILDKDYAFSDGEILMVDNAVRTHFE---PYERHFKEIGFT 54 +C +HH + K+ G+ +++ +E ++ + F Sbjct: 38 PRLCDYYLMHHVISGKGIFMYRGKELELKAGDTFLIEPEELVRYEADQVNPWMYRWVAFQ 97 Query: 55 ENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC 114 + + L+ T + V R + + L + +++ L ++ H + L+ Sbjct: 98 GKGVPEALEKTGFSSSRCIVH---TRDNQNVSELFSTILSVLQDKKEGAHQKALGYLYVL 154 Query: 115 LSIFAAC----KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKK 170 G ++ K + ++ + A ++ + D L + + L + Sbjct: 155 FGELCEAIYPKTGIGMRTSSESGRTVQKAIHYLSTQYAEDISIETMADNLGYNRAYLSRI 214 Query: 171 LKQE-QTTFSQILLDARMQHAKNLIRV--EGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 KQE T LL R+ A+ L+R E ++ +IA G+ YF F++ + +P Sbjct: 215 FKQETGLTPVTFLLKLRIDKARFLLRQRMELTIEQIASSVGFHDPLYFSKQFKRFYKCAP 274 Query: 228 KRVS 231 Sbjct: 275 TEYR 278 >UniRef50_C9RT55 Two component transcriptional regulator, AraC family n=4 Tax=Bacillales RepID=C9RT55_GEOSY Length = 259 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 2/99 (2%) Query: 141 NIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEG 198 ++ + LKD+ + ++++ S K++ Q TFS+ L RMQ AK L+ + Sbjct: 161 QFIDQRLKDDISLKDVAEHVHLNPSYFSTLFKEQMQLTFSEYLTRRRMQRAKELLMTTDM 220 Query: 199 SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 +V +IAE+CGY + YFI+ F++ G +P K + + Sbjct: 221 TVAEIAEECGYRTAKYFIHLFKEMEGKTPSSYRKSQKGK 259 >UniRef50_Q1LKT4 Transcriptional regulator, AraC family n=3 Tax=Proteobacteria RepID=Q1LKT4_RALME Length = 331 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 3/103 (2%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA-KNLIRV 196 KVR ++++ L D+ L++S L +KL+QE +F I + R A +L+R Sbjct: 227 KVRELLHVDLGR--TLDDVSSRLHMSSRTLMRKLQQEGLSFQGIKDELRRDLAILHLVRN 284 Query: 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 + S+ +I++ G+++ + F AFR G +P R + SH Sbjct: 285 DSSLEEISDALGFSAPAVFHRAFRHWTGMTPGRYRAAQQGISH 327 >UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N5F0_9GAMM Length = 339 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 2/106 (1%) Query: 128 LTNGVLSVSGKVRNIVNMKPAHP-WKLKDICDCLYISESLLKKKLKQEQTTFSQILLDAR 186 L + + V V H L+D+ + L +S L++K KQ+ T F I+ D R Sbjct: 221 LKKQKNAANEVVTQFVIDSLQHKVPTLQDVAEHLGVSARNLQRKFKQQGTNFKTIVDDIR 280 Query: 187 MQHA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 ++A L++ + IA+ G++ S F AF++ G +P Sbjct: 281 KEYAFTYLLQTNYKMTYIAQILGFSEQSVFQRAFKRWTGMTPGEYR 326 >UniRef50_D1N3X5 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3X5_9BACT Length = 286 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIR 195 +V + P + D+ D S ++ +Q E + + + D +M+ A L++ Sbjct: 185 KRVHAYALANLSRPLSVGDLADAAGCSRWHFSRRFQQLEGKSPHEFVTDLKMRLAVRLLQ 244 Query: 196 V-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 GSV ++AE CG+ SYF FR H+G SP Sbjct: 245 TTNGSVKEVAENCGFEDASYFCKVFRNHYGVSPAGFRS 282 >UniRef50_UPI00017895AE two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017895AE Length = 353 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 3/103 (2%) Query: 137 GKVRNIVNMKPA-HPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI 194 K + + A L+++ D + +S + L + K E F + L+ RM+ A+ L+ Sbjct: 247 QKAKRFIEENYAMEDLSLQEVADSVGMSVTYLSRTFKSETNMNFVKYLVQVRMEKARELL 306 Query: 195 -RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 E S + A + G++ +F F+K G +P K+ + Sbjct: 307 AESELSAQEAAYRVGFSDYVHFSKTFKKFHGLTPSAYRKQCKA 349 >UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein n=10 Tax=Acinetobacter RepID=B2HXY7_ACIBC Length = 344 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 1/114 (0%) Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLD 184 + L + +S ++ ++ K+K + + +SE L++ L E T+FS ++ Sbjct: 225 LKLRSGWKAEISQVIKKLLINSQGEILKVKQVAQMMNMSERSLQRYLAIENTSFSALVDL 284 Query: 185 ARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 R Q+A++L++ S+ +A GYA T +F AF++ G +PK + + + Sbjct: 285 TRKQYAQDLLQNSSMSIEAVALSLGYADTPHFTRAFKRWMGVTPKYYQTQLKLK 338 >UniRef50_C0EIY2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIY2_9CLOT Length = 252 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 17/182 (9%) Query: 56 NTIKKYLQCTN---IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLF 112 T++ +L C V + A +P L +I+ + H + E +L Sbjct: 77 GTVRMFLTCHEDFAYAKQAVKLGAFDYLLKPIPYEELEFVISQALEHSKKSH-YQEQVLG 135 Query: 113 SCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 S + G V +V+ IV+ +H + I + ++++ L K Sbjct: 136 SLYPADSQEPG-----------VVHRVKEIVSQFISHDLTREQIAELVHLAPDYLSHLFK 184 Query: 173 QE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 +E T S+ + R+ AK L+ + V+ IA++ GY+ SYF F+K +G +P Sbjct: 185 KETGVTLSEYIASQRLTMAKYLLAQTSLPVSSIADKVGYSYVSYFNRVFKKAYGMTPVEY 244 Query: 231 SK 232 + Sbjct: 245 RR 246 >UniRef50_C5BUW4 Transcriptional regulator, AraC family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BUW4_BEUC1 Length = 322 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 13/162 (8%) Query: 85 PTGLLNEMIAYLNSEERNHH----NFSELLLFSCLSIF-----AACKGFITLLTNGVLSV 135 T LL+ I + + SEL+ L A + ++ L + + Sbjct: 164 MTSLLDAAIVASDERDAGQEAMLAKLSELMFVEALKTHIEGLPADTRNWVAGLRDREI-- 221 Query: 136 SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI 194 G +++ + A PW L+ + + +S S L ++ L R+Q A L+ Sbjct: 222 -GSALRLMHGRFAEPWTLEHLARDVGMSRSSLAERFTAYVGVPPMTYLARWRLQLAARLL 280 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 + V + A GY S S F AF++ G +P + R Sbjct: 281 QSGSGVAQAASAVGYQSESAFNRAFKRQVGEAPGVWRRRLRA 322 >UniRef50_B8FM47 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM47_DESAA Length = 277 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 14/233 (6%) Query: 13 AFNANILDKDYAFSDGEILMVDNAVRTHFEPYERH----------FKEIGFTENTIKKYL 62 + + K G +++ P E H + I +K + Sbjct: 41 SIGIVLEGKRVIDQKGASVVIGPKDVFLINPGEPHACKSEDGKHTYFTICVEPEALKSFA 100 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELL--LFSCLSIFAA 120 + + P + L+ E + + + L+ L + + + Sbjct: 101 SQISEKAQETPYFSCLAAKDEELNSLIREFMTLVQKSGSTMEKEASLISILSTAILRYGD 160 Query: 121 CKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFS 179 I ++ V +V + R + A LK++ +S ++ + + Sbjct: 161 NPPEIRRISPHVQAV-NRAREYIKTHYAENLTLKELAGVACLSPFYFQRLFLENVGISPH 219 Query: 180 QILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 L+ R++ A+ ++ S+ A G+ S+F AF++ G SP R + Sbjct: 220 DFLIQYRIKKAREMLDQGSSLADAALDVGFTDQSHFTRAFKRVTGISPGRYIR 272 >UniRef50_A9IHK1 Transcriptional regulator, AraC family n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IHK1_BORPD Length = 343 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 1/112 (0%) Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDAR 186 + +++ +V + P ++++ +S S L + K T S+ LL R Sbjct: 232 IRPRDQAIAERVAARLAETFRDPPSVRELARQAGVSVSKLSRIFKAVHGATLSEYLLAVR 291 Query: 187 MQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 M+HA LIR V ++A + GY F AFR+H+G SP+ V R +S Sbjct: 292 MRHAMALIRARLPVTQVAFEVGYDHAGNFSTAFRRHYGVSPRAVGATPRERS 343 >UniRef50_C5EU48 Response regulator receiver protein n=4 Tax=Clostridiales RepID=C5EU48_9FIRM Length = 546 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 12/156 (7%) Query: 92 MIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLS---------VSGKVRNI 142 M L E + F+ + F+ + L N V++ V + + Sbjct: 391 MAQILEEGEEHEDTFALIPKMQKKEDFSQWLLSVALRMNQVMNQERDNTMKQVIQEAKEY 450 Query: 143 VNMKPAHP-WKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGS 199 + P ++ IC L++S + K+E + L + R+ A L+ + + Sbjct: 451 IMDNYQDPDLSVEKICRHLHMSPAYFSTMFKKETGQAYIAYLTEVRLNKAVELLNKTDDK 510 Query: 200 VNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 IA + GY +YF Y F+K FG SP + R Sbjct: 511 TYVIASKVGYQEQNYFSYVFKKRFGISPTKFRGAKR 546 >UniRef50_Q1N3Z6 Transcriptional regulator, AraC family protein n=1 Tax=Bermanella marisrubri RepID=Q1N3Z6_9GAMM Length = 330 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 2/108 (1%) Query: 129 TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARM 187 + +V R + M P KL+++ L +++ L ++ T LL R+ Sbjct: 220 PDTKDTVVEAAREYIRMNYTRPIKLQELAQQLNVTQRTLTRRFNAALGETPIAYLLSYRL 279 Query: 188 QHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 + AKNL++ + V +IAEQ G+AS + F F+ FG SPK K+ Sbjct: 280 KIAKNLLKSTDYQVQQIAEQTGHASATVFCRNFKSMFGCSPKEYRKDM 327 >UniRef50_Q2GAB8 Transcriptional regulator, AraC family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2GAB8_NOVAD Length = 299 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-R 195 K+ N + PA L+ + ++ S + K+ T Q ++ AR+ A+ ++ + Sbjct: 196 KIMNAILADPAAEHSLEAMAAVAGVTPSHFCRLFKKAIGITPHQYVMKARLDRAQQMLVQ 255 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 E S+ ++E G+AS S+F AFR FG +P ++ R ++ Sbjct: 256 TEMSLAALSEAAGFASQSHFSRAFRSWFGMAPSDFRQQERRRT 298 >UniRef50_A8RKC7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKC7_9CLOT Length = 545 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 3/105 (2%) Query: 130 NGVLSVSGKVRNIVNMKPAHP-WKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARM 187 N + V K + + P ++ IC L++S + K+E ++ L R+ Sbjct: 438 NTMKQVIQKAKEYIMDNYQDPDLSVEKICRQLHMSPAYFSTMFKKETGQAYTAYLTQVRL 497 Query: 188 QHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 A L+ + + IA + GY +YF Y F+K FG SP + Sbjct: 498 DKAVELLNKTDDKTYVIAAKVGYQEQNYFSYVFKKRFGVSPTKFR 542 >UniRef50_C6J482 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J482_9BACL Length = 553 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 3/128 (2%) Query: 107 SELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPA-HPWKLKDICDCLYISES 165 E + + T + + + + + H + +C L+IS Sbjct: 420 DEAKAWFLDICMKLKQSIATDRQSSYNKLVDEAKEYILAHYGDHDISIAKVCQHLHISTG 479 Query: 166 LLKKKLKQEQ-TTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHF 223 K+E TTF L+ RM A++L+ + +IAE+ G+A +YF + FRK F Sbjct: 480 YFSNIFKKETKTTFVNYLMGVRMDAAQDLLATTDLKAFEIAERVGFADPNYFSFCFRKKF 539 Query: 224 GNSPKRVS 231 G SPK Sbjct: 540 GISPKEYR 547 >UniRef50_A7B5D7 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5D7_RUMGN Length = 289 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 15/159 (9%) Query: 89 LNEMIAYLNSEERNH-----HNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKV---- 139 + + +N E H FS +S + + C+ F++L G LS V Sbjct: 127 MQNKVDLINIETEKIEYYYLHPFSRFPYYSQIIVSYLCQLFLSLAEQGTLSSVSSVPDAI 186 Query: 140 -----RNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQILLDARMQHAKNL 193 N +N + +I + IS++ LK+ K + + LL ++ AK L Sbjct: 187 TFRNAINFLNTNLDCQPTVSEIAEYCNISDASLKRIFDKYAGISVHKYLLKLKINVAKKL 246 Query: 194 IRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 ++ G V+ +AE G+AS SYF AF++ G +P +K Sbjct: 247 LQDGGQVSVVAENLGFASQSYFSKAFKRETGFTPSDFAK 285 >UniRef50_A6B243 Transcriptional activator of virulence loci n=4 Tax=Vibrio parahaemolyticus RepID=A6B243_VIBPA Length = 247 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 3/150 (2%) Query: 82 SNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRN 141 N + I L + + L L A + L S+S ++ Sbjct: 83 DNYAFNKMKPYIDSLIHVQNGIFEHTNFL--QELINRDAFRTLKKLDIKRTDSISERIHR 140 Query: 142 IVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN-LIRVEGSV 200 +++ + H W ++I L +S++ L +++ QE+TT S ++L ARM A L++ + + Sbjct: 141 LISKQIQHRWTAEEISKNLNMSKATLMRRISQEKTTLSDLILSARMNKAAYLLLKKKHPI 200 Query: 201 NKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 K+A G++S SYF F++ +GNSPK+ Sbjct: 201 KKVAHLTGFSSASYFCKKFKETYGNSPKQF 230 >UniRef50_C5EK80 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C5EK80_9FIRM Length = 291 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 9/229 (3%) Query: 22 DYAFSDGEILMVDNAVRTHFEP---YERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKF 78 Y GE ++ + + + + F +K+ L+ + T+ P Sbjct: 64 TYHIKSGEGFLIHPKQVNTYSADRDHPWEYTWLEFDGLRVKEALELAGL---TMDNPVYH 120 Query: 79 LRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGK 138 A ++ L NEM+ N +++ + L + + + + + Sbjct: 121 SNARDLSLELKNEMLYIANHSDQSPFHLIGHLYLFLDYLTRSSSSRRMMRGGKLQDFYIR 180 Query: 139 -VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR- 195 + + + ++DI ++ S K + + + L+ RM A L++ Sbjct: 181 EATSFIEQNFQNDISVEDIAAFCNLNRSYFGKIFRDAVGKSPQEFLISYRMTKAAELLKL 240 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNT 244 E ++ I GY S +F AF+K +G SP+ E + S TG Sbjct: 241 TELTIKDIGNAVGYPSQLHFSRAFKKTYGISPREWRSENKIASGTGKGK 289 >UniRef50_Q391T4 Transcriptional regulator, AraC family n=8 Tax=Proteobacteria RepID=Q391T4_BURS3 Length = 288 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 5/151 (3%) Query: 86 TGLLNEMI---AYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNI 142 + LL E+I + E ++ I + + + L + ++ +V + Sbjct: 134 SPLLRELIVRASAFPVEVNPDGRDDLVIQLMLAEIEWSAEQPLRLPSGQDRRLA-RVCDA 192 Query: 143 VNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGSVN 201 + PA L + D + S L + E +FSQ AR+ A+ L+ SV Sbjct: 193 ILANPADQRTLTEWADEVGASSRTLARLFTAETGLSFSQWRQQARISAARPLLASGRSVI 252 Query: 202 KIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +A + GY +TS F FR+ G +P +K Sbjct: 253 AVAAELGYETTSAFSTVFRRFAGMTPSAYAK 283 >UniRef50_C6CZ23 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ23_PAESJ Length = 522 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 2/99 (2%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDARMQHAKNLIR 195 ++ + ++ A L ++ + + S L F L R++ A L+R Sbjct: 421 KRLLDYIHEHYAESLNLTEMAKHFHFNPSYLSSYFSTHHNEGFVDYLHRVRLEKASELLR 480 Query: 196 V-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 E S+++I+ GY+ SYF F+KH G SP R ++ Sbjct: 481 AGEASISEISGMVGYSDHSYFCKVFKKHTGLSPSRYRQQ 519 >UniRef50_B9DSF4 AraC family regulatory protein n=1 Tax=Streptococcus uberis 0140J RepID=B9DSF4_STRU0 Length = 387 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 81/196 (41%), Gaps = 21/196 (10%) Query: 54 TENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLN-----SEERNHHNFSE 108 ++ +L Q+VT K LR+ + L+ E ++ L HH Sbjct: 189 DLKEVRSFLS----QSVTPKGVTKDLRSEKNYSILIFEKLSQLAISMGVDPVYAHHTRDY 244 Query: 109 LL-----LFSCLSIFAACKGFITLLTNGVLSV------SGKVRNIVNMKPAHPWKLKDIC 157 + + + A + I L T + + K+ ++ + ++DI Sbjct: 245 YMSKCEACLNIHDVLALRESAIILFTQKIGRINNHSYTVAKILRYIHQNLSQKLMVEDIA 304 Query: 158 DCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFI 216 SES ++K ++E + Q + +M+ AK ++R + +V +++ GYA ++F Sbjct: 305 KQFNFSESTIRKLFRKEMNCSLQQYISRKKMEEAKVMLRNQNNVTEVSNSLGYADLAHFS 364 Query: 217 YAFRKHFGNSPKRVSK 232 F+ H G SPK+ + Sbjct: 365 RTFKAHVGLSPKQYQR 380 >UniRef50_P77634 Uncharacterized HTH-type transcriptional regulator ybcM n=37 Tax=Enterobacteriaceae RepID=YBCM_ECOLI Length = 265 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 1/111 (0%) Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDAR 186 LL+ S+ + N++ +P W + LYIS S L ++L E +F IL D R Sbjct: 155 LLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 Query: 187 MQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 + +A + I+ +++IA + GY S F F F +P+ + K R Sbjct: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 >UniRef50_UPI0000F30067 putative transcriptional regulator AraC/XylS family protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F30067 Length = 194 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 12/141 (8%) Query: 104 HNFSELLLFSCLSIFAACKGFITLLT-----------NGVLSVSGKVRNIVNMKPAHPWK 152 H F + L + S F K + L N S+S +V+ +++ + Sbjct: 49 HQFIDFSLVAPPSAFKFRKRELLELIYYSGYTAIAKLNMNKSLSERVQTLISYHLSTELT 108 Query: 153 LKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYAS 211 + I L++S S L++KLK E + I R+ H +LI+ S+ IA +CGY S Sbjct: 109 AEFIAAQLFMSSSTLRRKLKSEGNSIQDIRNRVRLGHGLHLIQTTNNSIGNIAFECGYQS 168 Query: 212 TSYFIYAFRKHFGNSPKRVSK 232 S F F+ FG +P+ + K Sbjct: 169 QSRFTEQFKNLFGITPRELRK 189 >UniRef50_C6CT66 Two component transcriptional regulator, AraC family n=2 Tax=Bacillales RepID=C6CT66_PAESJ Length = 262 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Query: 141 NIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDARMQHAKNLI-RVEG 198 + P ++DI D L+++ S K Q TFS L R+Q AK L+ Sbjct: 159 QYLEEHLHEPVTMRDIADHLHMNASYFSVLFKEQTGLTFSDYLTRRRVQRAKELLTNTRL 218 Query: 199 SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 S+N+IAE+ GY + YF+ FR H G SP + K Sbjct: 219 SINEIAEKAGYQTAKYFVKVFRSHEGVSPGQYRK 252 >UniRef50_A6BKJ9 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BKJ9_9FIRM Length = 514 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 72/201 (35%), Gaps = 25/201 (12%) Query: 38 RTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLN 97 R + E + + + + Y + + T + I L+ Sbjct: 327 RRQYSLNEYQVLILEISFSFSRFYKKYQITSDM-----------EFAGTKKMAVKILSLS 375 Query: 98 SEERNHHNFSEL--LLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMK-PAHPWKLK 154 + E H L+ S + I ++ R IV + P ++ Sbjct: 376 TGEELDHWLVNYCELIRSLIQKKQIDNNVI---------LAEHARKIVEERFPDPDLSVE 426 Query: 155 DICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYAST 212 +C L++S S K KQE TF L RM+ AK L+ + + I GY Sbjct: 427 TVCGKLHVSSSYFSKIFKQETGGTFVNYLTGRRMEEAKKLLLQTDYKSQVIGNMVGYPEP 486 Query: 213 SYFIYAFRKHFGNSPKRVSKE 233 +YF Y F+K+ G SP + K+ Sbjct: 487 NYFSYVFKKNCGMSPVKYRKQ 507 >UniRef50_C0Z962 Probable two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z962_BREBN Length = 234 Score = 110 bits (275), Expect = 4e-23, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 34/192 (17%) Query: 69 TVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITL- 127 + VP+ FL + L L E R H EL++ + F K I L Sbjct: 42 SQKVPLHLAFLDINLPGKSGLV-----LGEELRAQHKDIELIIVTAYQDFHYAKQSIRLG 96 Query: 128 ---------------------LTNGVLSVSGKVR----NIVNMKPAHPWKLKDICDCLYI 162 + LS ++ NI++ K A L D+ ++I Sbjct: 97 VVDYITKPVIESELVDILKKYQKSPALSAYTRIISDAMNIIHQKFAEKLNLADLAAEVHI 156 Query: 163 SESLLKKKLKQE-QTTFSQILLDARMQHAKNLI--RVEGSVNKIAEQCGYASTSYFIYAF 219 + + L ++ +E +FS+ L+ R+Q +K + + S++ +AE+ G+ S YF F Sbjct: 157 NPTYLSRRFHEEVGVSFSEYLMQYRIQMSKKFLIAHPDWSISTVAERTGFNSQHYFSTIF 216 Query: 220 RKHFGNSPKRVS 231 RK G +PK Sbjct: 217 RKVVGKTPKEYR 228 >UniRef50_Q39GD4 Transcriptional regulator, AraC family n=7 Tax=Betaproteobacteria RepID=Q39GD4_BURS3 Length = 278 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 67/170 (39%), Gaps = 8/170 (4%) Query: 69 TVTVPVPAKFLRASNVPTGLLNEMIAYLN-SEERNHHNFSELLLFSCLSIFAACKGFITL 127 + +P + + + L+ +++ + ++L + + + Sbjct: 111 SRRMPDQPCVIAITELMRALVRRAVSWADQDRLDIEQARISIVLLDEMRRAPHEPLHLPM 170 Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDAR 186 + L ++ N + +P L+ + +S L + E T+F+Q AR Sbjct: 171 PRDRRLL---RIANAILGQPHDSRTLEAWAEWAGLSARTLSRLFVAETGTSFAQWRQQAR 227 Query: 187 MQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV---SKE 233 + HA + SV IA+ GYA+ S FI FR+ FG+SP K+ Sbjct: 228 LTHALERLASGDSVANIADALGYATPSNFIAMFRRAFGDSPAHYFAKRKQ 277 >UniRef50_C5T965 Transcriptional regulator, AraC family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T965_ACIDE Length = 346 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 115 LSIFAACKGFITLLTNGVLSVSGKVRN-IVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 L C+ F++ L + V V+ +VR ++ PA+ + + + L + E L+++L+ Sbjct: 225 LMAVEYCQKFLSEL-SHVGGVASQVRRALLEKTPANFPTIDLMAEELGMQERTLRRRLEA 283 Query: 174 EQTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 E TT+ ++L AR A + +R IA + GY+ + F AF + G++P+ K Sbjct: 284 EGTTYRELLAGARKLLAIDYLRANKLKTMDIATRLGYSDVANFRNAFYRWTGHTPRHYRK 343 Query: 233 E 233 + Sbjct: 344 Q 344 >UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABU8_9CLOT Length = 412 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 63/151 (41%), Gaps = 2/151 (1%) Query: 84 VPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIV 143 + + ++ + + N N +L + + + + + + K + + Sbjct: 260 ADSNTIIDLNSKFLYKISNIKNIEDLSYWVIHMLDSFTQNVFNFNESKNPVLIQKCISYI 319 Query: 144 NMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVN 201 N L+ I + ++++ S K+E +FS L R++ +K L++ + S+ Sbjct: 320 NEHYNEDINLETIANIVHLNPSYFSSIFKKEVGVSFSNYLNKIRIEQSKLLLKNTDSSIV 379 Query: 202 KIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +IA + G+ SYF F+ +PK+ + Sbjct: 380 EIALEVGFEDQSYFSKVFKNLTKMTPKQYRQ 410 >UniRef50_A5EF29 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A5EF29_BRASB Length = 382 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 129 TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQ 188 ++ +R I+ +P + +I + +S L ++L + T+ I+ D R Sbjct: 250 QRPASELAESIRTILVRQPGRFATIDEIASEIGMSLRTLNRRLAADGITYQSIIDDMRKT 309 Query: 189 HAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 A + R V +I + G++ TS F AF+K G SP E Sbjct: 310 LAIEYLERTTLPVEQICARVGFSDTSNFRKAFKKWTGQSPSSFRAE 355 >UniRef50_A4VG28 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VG28_PSEU5 Length = 312 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 2/105 (1%) Query: 135 VSGKVR-NIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNL 193 VS +VR I+ + + L+ I + L +S L +KL +E T+F ++ + R A Sbjct: 207 VSLQVRKEIIALLSSDKLGLEHIAERLNMSGRNLHRKLAEEGTSFKELQDEIRQDLALRY 266 Query: 194 I-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 + S+N+IA G+ S F AF++ G SP + + R + Sbjct: 267 LGMSGMSLNEIAFNLGFIDQSSFNRAFKRWTGGSPGQYRRALRER 311 >UniRef50_A9FPY9 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FPY9_SORC5 Length = 343 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 112 FSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL 171 + C S+ A CK + V ++ ++ L D+ L +E L+++L Sbjct: 216 YLCRSVSALCKQLAP--PSIADGVRHQLARALSSAEGGIPTLDDVARSLGTTERTLRRRL 273 Query: 172 KQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 + E+T+F +++ + R A +L+ SV + A + G++ T+ F +AFR+ FG P+ + Sbjct: 274 EVERTSFRKLVEEMRRDRAADLL-ARSSVTETALRLGFSDTTAFSHAFRRWFGRPPRELR 332 Query: 232 KEYRCQSHTG 241 H G Sbjct: 333 GARGAAGHQG 342 >UniRef50_B1Q2A8 Transcriptional activator for nphA1A2 n=4 Tax=Nocardiaceae RepID=B1Q2A8_9NOCA Length = 335 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 2/99 (2%) Query: 138 KVRNIVNMKPAH-PWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKN-LIR 195 +V+ ++ L DI +S + K E TT L AR++ A+ L+ Sbjct: 232 RVQRVIEQNLHDADITLSDIAAAAGMSLRTVHKLFNAEGTTTRAWLYQARLEAARRYLLT 291 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 + SV ++E G+ S+F FR FG+SP KE+ Sbjct: 292 TDLSVADVSECAGFRDVSHFSRLFRSTFGSSPGLYRKEH 330 >UniRef50_B4X0B5 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X0B5_9GAMM Length = 321 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 74/181 (40%), Gaps = 7/181 (3%) Query: 58 IKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSI 117 + ++ +Q ++ V L + LL + + + + L L + Sbjct: 142 LTRWSTGEQLQANSISVSHPALADPDRYQQLLGVPVEFEAAHNSLRIPAAALSLPLIYAN 201 Query: 118 FAACKGFITLLTN-----GVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 A C+ TL G S+S VR+++ P W + + + L +S L +KL Sbjct: 202 PALCQHLRTLADQLLEQLGSQSLSVSVRDLLRQNP--RWGKEKVAEQLAMSGRHLIRKLS 259 Query: 173 QEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +E T+F + A+ ++ + IA++ G++ S F AF++ G +P + Sbjct: 260 EEGTSFKLLRDSLLQGMAEQSLKEGLKLFDIADKLGFSDESAFAKAFKRWTGMTPAQFRS 319 Query: 233 E 233 + Sbjct: 320 Q 320 >UniRef50_C5ETL2 Two component transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETL2_9FIRM Length = 517 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 5/128 (3%) Query: 108 ELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLL 167 E L++ + + ++N + + N + L+++ L I+ L Sbjct: 393 EQSYRDGLALLCSPRRMKEDISNYTI---KRAINYIREHYKEGISLEEVAGRLGITPEYL 449 Query: 168 KKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGN 225 +E FS L R+ HAK L++ + V +IAE+ GY YF F++ G Sbjct: 450 STLFNREMGENFSTFLRKFRISHAKRLLKGTDMKVYEIAEEVGYTDPKYFARVFKEELGI 509 Query: 226 SPKRVSKE 233 SP ++ Sbjct: 510 SPGDYRQQ 517 >UniRef50_A8SAS3 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SAS3_9FIRM Length = 271 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNL 193 V VR + L + + L+IS + L + K+ Q F L + R+ AK L Sbjct: 161 VMDHVRKYMEDNYMADLSLDSVSEILHISPAYLSAQFKKYQKMNFLDCLTELRINAAKEL 220 Query: 194 IRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + S ++A GY SYF AF+K G +P + KE Sbjct: 221 LADPFRSAAEVASMVGYEDASYFARAFKKRTGMTPTQYRKE 261 >UniRef50_A6F6Z7 Probable transcriptional regulator n=1 Tax=Moritella sp. PE36 RepID=A6F6Z7_9GAMM Length = 354 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 20/191 (10%) Query: 43 PYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERN 102 P E H + + I Y Q P F ++SN + Sbjct: 169 PLEVHLQRVAPAPELIDHYQQIFAC-------PVLFAQSSN--------SLVLSRDNLNI 213 Query: 103 HHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKD-ICDCLY 161 + L L + AA G ++ L G S S +V +I+ + + KD + L Sbjct: 214 PLRQPDHSLLQTLELHAA--GQVSAL-EGTHSFSVQVHDIIRILLSKGITRKDMVAAQLN 270 Query: 162 ISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFR 220 +SE L++KL+QEQT++ ++L +AR+ A+ + + + +++IA G++ T F +F+ Sbjct: 271 MSERTLQRKLQQEQTSYQKLLDEARLSLAQQYLTKSKAGIDEIAIMLGFSETRSFFRSFK 330 Query: 221 KHFGNSPKRVS 231 G +P Sbjct: 331 LWTGQTPNVYR 341 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 267 2e-70 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 195 1e-48 UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in... 190 3e-47 UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positiv... 188 2e-46 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 187 3e-46 UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 187 5e-46 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 186 7e-46 UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax... 178 1e-43 UniRef50_C6UPG2 Putative envelope protein encoded within prophag... 178 1e-43 UniRef50_A8SRM1 Putative uncharacterized protein n=1 Tax=Coproco... 160 3e-38 UniRef50_UPI0001692C08 transcriptional regulator (AraC/XylS fami... 157 4e-37 UniRef50_C3RN82 Transcriptional regulator n=2 Tax=Bacteria RepID... 156 7e-37 UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 155 1e-36 UniRef50_C6LM61 Putative raffinose operon transcriptional regula... 154 3e-36 UniRef50_C5EK80 Putative uncharacterized protein n=2 Tax=Clostri... 153 3e-36 UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostri... 153 5e-36 UniRef50_B1SDU2 Putative uncharacterized protein n=1 Tax=Strepto... 153 7e-36 UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=E... 152 1e-35 UniRef50_C6IWJ9 Transcriptional regulator n=1 Tax=Paenibacillus ... 152 1e-35 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 151 2e-35 UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1... 150 3e-35 UniRef50_C9LA22 Transcriptional regulator, AraC family n=2 Tax=C... 150 4e-35 UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnos... 149 9e-35 UniRef50_C9RVZ3 Two component transcriptional regulator, AraC fa... 149 1e-34 UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1... 149 1e-34 UniRef50_Q0TS97 Transcriptional regulator, AraC family n=6 Tax=C... 148 2e-34 UniRef50_A7B7P4 Putative uncharacterized protein n=1 Tax=Ruminoc... 148 2e-34 UniRef50_Q71VU1 Transcriptional regulator, AraC family n=21 Tax=... 148 2e-34 UniRef50_C9KMM6 Putative AraC-type DNA-binding domain-containing... 148 2e-34 UniRef50_A5Z7W7 Putative uncharacterized protein n=1 Tax=Eubacte... 148 2e-34 UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostri... 146 6e-34 UniRef50_UPI0001C37EF8 AraC family transcriptional regulator n=1... 145 9e-34 UniRef50_Q3ADL3 Transcriptional regulator, AraC family n=1 Tax=C... 145 1e-33 UniRef50_C6LLK3 Putative two-component response regulator n=1 Ta... 145 1e-33 UniRef50_C2KWQ1 AraC family transcriptional regulator n=1 Tax=Or... 145 1e-33 UniRef50_C6LL87 Transcriptional regulator, AraC family n=1 Tax=B... 145 2e-33 UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostri... 145 2e-33 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 144 2e-33 UniRef50_B8FM47 Transcriptional regulator, AraC family n=1 Tax=D... 144 3e-33 UniRef50_A6BIB0 Putative uncharacterized protein n=1 Tax=Dorea l... 143 4e-33 UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyri... 143 5e-33 UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=... 143 5e-33 UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 T... 143 5e-33 UniRef50_C4ZGK8 Two-component response regulator n=1 Tax=Eubacte... 143 7e-33 UniRef50_B1BNT9 Transcriptional regulator, AraC family n=4 Tax=C... 143 7e-33 UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=C... 142 9e-33 UniRef50_UPI0001C3592F AraC-like transcriptional regulator n=1 T... 142 1e-32 UniRef50_A3CML2 Arabinose (Multiple sugar metabolism) operon tra... 141 2e-32 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 141 2e-32 UniRef50_C5EQL5 Transcriptional regulator n=1 Tax=Clostridiales ... 141 2e-32 UniRef50_B5YFJ6 Transcriptional regulator, putative n=2 Tax=Dict... 141 2e-32 UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=... 141 3e-32 UniRef50_C5D8H7 Two component transcriptional regulator, AraC fa... 140 3e-32 UniRef50_C9KJL3 AraC-type DNA-binding domain-containing protein,... 140 3e-32 UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=... 140 4e-32 UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bactero... 140 4e-32 UniRef50_D1N7S2 Transcriptional regulator, AraC family n=2 Tax=V... 140 5e-32 UniRef50_Q00753 Msm operon regulatory protein n=8 Tax=Streptococ... 140 5e-32 UniRef50_C2EN40 AraC family transcriptional regulator n=2 Tax=La... 140 5e-32 UniRef50_C6IZ62 Transcriptional regulator n=1 Tax=Paenibacillus ... 140 6e-32 UniRef50_C7G788 Transcriptional regulator, AraC family n=2 Tax=B... 139 7e-32 UniRef50_C6BZV3 Transcriptional regulator, AraC family n=1 Tax=D... 139 7e-32 UniRef50_C6CVC0 Two component transcriptional regulator, AraC fa... 139 7e-32 UniRef50_A9KRL7 Transcriptional regulator, AraC family n=1 Tax=C... 139 7e-32 UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Rosebur... 139 7e-32 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 139 8e-32 UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacte... 139 8e-32 UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=P... 139 9e-32 UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacte... 139 1e-31 UniRef50_A5GD53 Transcriptional regulator, AraC family n=1 Tax=G... 138 1e-31 UniRef50_C6D477 Transcriptional regulator, AraC family n=1 Tax=P... 138 2e-31 UniRef50_C7G923 Transcriptional regulator, AraC family n=1 Tax=R... 138 2e-31 UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=... 138 2e-31 UniRef50_UPI000178921D transcriptional regulator, AraC family n=... 138 2e-31 UniRef50_C6IZS2 AraC family transcriptional regulator n=2 Tax=Ba... 137 3e-31 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 137 3e-31 UniRef50_UPI0001C35507 AraC family transcriptional regulator n=1... 137 3e-31 UniRef50_Q2RGN4 Two component transcriptional regulator, AraC fa... 137 4e-31 UniRef50_B0C3V1 Transcriptional Regulator, AraC family n=5 Tax=C... 137 4e-31 UniRef50_A9WH32 Sensor protein n=2 Tax=Chloroflexus RepID=A9WH32... 137 4e-31 UniRef50_C6CXJ2 Transcriptional regulator, AraC family n=1 Tax=P... 136 5e-31 UniRef50_C6CXU8 Two component transcriptional regulator, AraC fa... 136 5e-31 UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=A... 136 5e-31 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 136 6e-31 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 136 6e-31 UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=C... 136 6e-31 UniRef50_UPI0001C35A6E helix-turn-helix domain-containing protei... 136 6e-31 UniRef50_D2THV7 AraC-family transcriptional regulator n=6 Tax=En... 136 6e-31 UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepI... 136 8e-31 UniRef50_A5I5L7 AraC-family transcriptional regulator n=10 Tax=C... 136 8e-31 UniRef50_A9KSF8 Transcriptional regulator, AraC family n=1 Tax=C... 136 8e-31 UniRef50_C0CH60 Putative uncharacterized protein n=1 Tax=Blautia... 136 9e-31 UniRef50_UPI0001C35ADD AraC family transcriptional regulator n=1... 136 9e-31 UniRef50_A7AA81 Putative uncharacterized protein n=1 Tax=Parabac... 135 1e-30 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 135 1e-30 UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Ther... 135 1e-30 UniRef50_C6D5P5 Transcriptional regulator, AraC family n=1 Tax=P... 135 1e-30 UniRef50_C6JJY6 Transcription regulator n=1 Tax=Fusobacterium va... 135 1e-30 UniRef50_A8SQD4 Putative uncharacterized protein n=2 Tax=Coproco... 135 1e-30 UniRef50_C7GFI0 Transcriptional regulator, AraC family n=2 Tax=C... 135 1e-30 UniRef50_Q7UYE3 L-rhamnose operon transcriptional activator n=1 ... 135 1e-30 UniRef50_C6D5X4 Two component transcriptional regulator, AraC fa... 135 1e-30 UniRef50_C6D3L6 Transcriptional regulator, AraC family n=1 Tax=P... 135 2e-30 UniRef50_D2MNX8 Transcriptional regulator, AraC family n=1 Tax=B... 135 2e-30 UniRef50_C7G755 Transcriptional regulator, AraC family n=1 Tax=R... 135 2e-30 UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostri... 135 2e-30 UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicu... 135 2e-30 UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillu... 135 2e-30 UniRef50_D0I5P8 Transcriptional regulator AraC family n=1 Tax=Gr... 135 2e-30 UniRef50_UPI0001788F57 transcriptional regulator, AraC family n=... 135 2e-30 UniRef50_A9KIW0 Transcriptional regulator, AraC family n=1 Tax=C... 135 2e-30 UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostri... 135 2e-30 UniRef50_C7GHF4 Transcriptional regulator, AraC family n=1 Tax=R... 134 2e-30 UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein ... 134 3e-30 UniRef50_P32677 Uncharacterized HTH-type transcriptional regulat... 134 3e-30 UniRef50_C3SIM7 Membrane protein n=86 Tax=Enterobacteriaceae Rep... 134 3e-30 UniRef50_B5XY24 Transcriptional regulator, AraC family n=3 Tax=K... 134 3e-30 UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma pro... 134 3e-30 UniRef50_C6D3K6 Transcriptional regulator, AraC family n=1 Tax=P... 133 4e-30 UniRef50_A9KQP4 Two component transcriptional regulator, AraC fa... 133 4e-30 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 133 4e-30 UniRef50_Q65MB5 Probable transcriptional regulator n=1 Tax=Bacil... 133 4e-30 UniRef50_Q5WIZ4 Putative uncharacterized protein n=1 Tax=Bacillu... 133 4e-30 UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 ... 133 5e-30 UniRef50_A0Z5W7 AraC-type DNA-binding domain-containing protein ... 133 5e-30 UniRef50_B8I425 Two component transcriptional regulator, AraC fa... 133 6e-30 UniRef50_C0ABA0 L-rhamnose operon transcriptional activator n=1 ... 133 6e-30 UniRef50_B4WW69 Transcriptional regulator, AraC family protein n... 133 6e-30 UniRef50_C5RJU1 Two component transcriptional regulator, AraC fa... 133 7e-30 UniRef50_UPI0001C374E0 transcriptional regulator, AraC family pr... 133 7e-30 UniRef50_D1PME6 Transcriptional regulator, AraC family n=1 Tax=S... 133 7e-30 UniRef50_C6CWF4 Two component transcriptional regulator, AraC fa... 133 7e-30 UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 T... 133 7e-30 UniRef50_C4L9U6 Transcriptional regulator, AraC family n=1 Tax=T... 132 8e-30 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 132 1e-29 UniRef50_C0ET05 Putative uncharacterized protein n=2 Tax=Firmicu... 132 1e-29 UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=g... 132 1e-29 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 132 1e-29 UniRef50_C6QRS7 Two component transcriptional regulator, AraC fa... 132 1e-29 UniRef50_UPI000178A7F2 two component transcriptional regulator, ... 132 1e-29 UniRef50_D1N277 Transcriptional regulator, AraC family n=1 Tax=V... 131 1e-29 UniRef50_UPI0001788F54 two component transcriptional regulator, ... 131 2e-29 UniRef50_A4BEX9 AraC-type DNA-binding domain-containing protein ... 131 2e-29 UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 ... 131 2e-29 UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostri... 131 2e-29 UniRef50_A1HM14 Two component transcriptional regulator, AraC fa... 131 2e-29 UniRef50_C0YPK7 AraC-type DNA-binding domain-containing protein ... 131 2e-29 UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=... 131 2e-29 UniRef50_B2JSH9 Transcriptional regulator, AraC family n=1 Tax=B... 131 2e-29 UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC... 131 2e-29 UniRef50_UPI0001C36B1C two component transcriptional regulator, ... 131 2e-29 UniRef50_UPI0001788C4E two component transcriptional regulator, ... 131 2e-29 UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=B... 131 3e-29 UniRef50_Q1ZUP8 Transcriptional regulator, AraC family protein n... 131 3e-29 UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clost... 131 3e-29 UniRef50_A8S8J9 Putative uncharacterized protein n=1 Tax=Faecali... 130 3e-29 UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicu... 130 3e-29 UniRef50_B7K731 Transcriptional regulator, AraC family n=2 Tax=C... 130 3e-29 UniRef50_C4Z9T9 Ada regulatory protein/6-O-methylguanine-DNA met... 130 4e-29 UniRef50_C6D3S3 Two component transcriptional regulator, AraC fa... 130 4e-29 Sequences not found previously or not previously below threshold: UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=R... 152 9e-36 UniRef50_C3WEF1 Putative uncharacterized protein n=1 Tax=Fusobac... 147 3e-34 UniRef50_C6D8J8 Transcriptional regulator, AraC family n=1 Tax=P... 146 5e-34 UniRef50_A8SBA6 Putative uncharacterized protein n=1 Tax=Faecali... 145 1e-33 UniRef50_A8SS64 Putative uncharacterized protein n=1 Tax=Coproco... 144 2e-33 UniRef50_A8RTE5 Putative uncharacterized protein n=2 Tax=Clostri... 144 3e-33 UniRef50_B5CXD1 Putative uncharacterized protein n=1 Tax=Bactero... 143 4e-33 UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteri... 143 5e-33 UniRef50_Q9KAQ8 Transcriptional regulator (AraC/XylS family) n=1... 143 5e-33 UniRef50_C4ZBY6 Transcriptional regulator, AraC family n=7 Tax=C... 143 6e-33 UniRef50_B8D1C2 Transcriptional regulator, AraC family n=1 Tax=H... 143 6e-33 UniRef50_C9KMM0 Putative AraC-type DNA-binding domain-containing... 142 1e-32 UniRef50_C4ZBG0 Transcriptional regulator, AraC family n=5 Tax=C... 142 1e-32 UniRef50_C6CVH4 Transcriptional regulator, AraC family n=1 Tax=P... 141 2e-32 UniRef50_C4FUL3 Putative uncharacterized protein n=2 Tax=Catonel... 141 2e-32 UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bactero... 141 3e-32 UniRef50_C6D174 Transcriptional regulator, AraC family n=1 Tax=P... 140 5e-32 UniRef50_A5Z9N2 Putative uncharacterized protein n=2 Tax=Clostri... 139 8e-32 UniRef50_C5VY46 AraC-family regulatory protein n=8 Tax=Streptoco... 139 9e-32 UniRef50_A4BH94 Transcriptional regulator, AraC/XylS family prot... 138 1e-31 UniRef50_C7H5Z6 Transcription regulator, AraC family n=2 Tax=Rum... 138 1e-31 UniRef50_UPI0001C36461 AraC family transcriptional regulator n=1... 138 1e-31 UniRef50_C6D3K3 Transcriptional regulator, AraC family n=1 Tax=P... 138 2e-31 UniRef50_Q0SUX5 Lactose operon transcriptional activator n=9 Tax... 138 2e-31 UniRef50_C5EG90 Putative uncharacterized protein n=1 Tax=Clostri... 138 2e-31 UniRef50_Q0SVP8 Transcriptional regulator, AraC family n=3 Tax=C... 137 3e-31 UniRef50_C7G8V7 Putative raffinose operon transcriptional regula... 137 3e-31 UniRef50_C0CW55 Putative uncharacterized protein n=1 Tax=Clostri... 137 3e-31 UniRef50_Q4V1B1 MSM (Multiple sugar metabolism) operon regulator... 137 3e-31 UniRef50_C6IVE8 AraC family transcriptional regulator n=2 Tax=Ba... 137 4e-31 UniRef50_O33813 Lactose operon transcription activator n=4 Tax=S... 137 4e-31 UniRef50_C7NB33 Transcriptional regulator, AraC family n=1 Tax=L... 136 5e-31 UniRef50_C0BFD5 Putative uncharacterized protein n=2 Tax=Clostri... 136 5e-31 UniRef50_B2GEN0 Transcriptional regulator n=1 Tax=Lactobacillus ... 136 5e-31 UniRef50_Q2BQ54 Transcriptional regulator, AraC family protein n... 136 6e-31 UniRef50_C6JEQ5 Transcriptional regulator n=1 Tax=Ruminococcus s... 136 6e-31 UniRef50_A3CL13 AraC-type DNA-binding domain-containing protein,... 136 6e-31 UniRef50_C9AKD6 AraC-type DNA-binding domain-containing protein ... 136 6e-31 UniRef50_UPI0001C3766F two-component response regulator n=2 Tax=... 136 8e-31 UniRef50_A9KLS8 Transcriptional regulator, AraC family n=1 Tax=C... 135 1e-30 UniRef50_A8GGG4 Transcriptional regulator, AraC family n=2 Tax=S... 135 1e-30 UniRef50_C4IHE3 Msm operon regulatory protein n=1 Tax=Clostridiu... 135 1e-30 UniRef50_C9KND9 Transcriptional regulator, AraC family n=1 Tax=M... 135 1e-30 UniRef50_C6LA91 Putative transcriptional regulator n=1 Tax=Bryan... 135 2e-30 UniRef50_B0P929 Putative uncharacterized protein n=1 Tax=Anaerot... 135 2e-30 UniRef50_B9M3B3 Transcriptional regulator, AraC family n=1 Tax=G... 135 2e-30 UniRef50_A6M1S5 Transcriptional regulator, AraC family n=1 Tax=C... 134 2e-30 UniRef50_Q5WK82 AraC/XylS family transcriptional regulator n=1 T... 134 3e-30 UniRef50_B7MQA3 Putative AraC-type DNA-binding domain-containing... 134 3e-30 UniRef50_C7H3E2 Transcriptional regulator, AraC family n=4 Tax=C... 134 3e-30 UniRef50_C6D3B4 Transcriptional regulator, AraC family n=1 Tax=P... 134 3e-30 UniRef50_B0MKI2 Putative uncharacterized protein n=1 Tax=Eubacte... 133 4e-30 UniRef50_A6M1I8 Transcriptional regulator, AraC family n=1 Tax=C... 133 4e-30 UniRef50_A7B0Y7 Putative uncharacterized protein n=1 Tax=Ruminoc... 133 4e-30 UniRef50_Q5WK33 AraC/XylS family transcriptional regulator n=1 T... 133 5e-30 UniRef50_B0NXL6 Putative uncharacterized protein n=1 Tax=Clostri... 133 5e-30 UniRef50_C6JCU7 Transcriptional regulator n=3 Tax=Ruminococcus R... 133 5e-30 UniRef50_C3R936 Transcriptional regulator n=2 Tax=Bacteroidales ... 133 6e-30 UniRef50_A8RL67 Putative uncharacterized protein n=1 Tax=Clostri... 133 7e-30 UniRef50_C6CX81 Transcriptional regulator, AraC family n=1 Tax=P... 133 7e-30 UniRef50_UPI0001C34C27 transcriptional regulator, AraC family pr... 132 8e-30 UniRef50_UPI0001C36471 AraC family transcriptional regulator n=1... 132 8e-30 UniRef50_B9DS09 AraC family regulatory protein n=18 Tax=Streptoc... 132 8e-30 UniRef50_A9KN44 Transcriptional regulator, AraC family n=3 Tax=C... 132 8e-30 UniRef50_B8FQG3 Transcriptional regulator, AraC family n=2 Tax=D... 132 1e-29 UniRef50_D1PIK0 Putative pectin acetylesterase n=1 Tax=Subdoligr... 132 1e-29 UniRef50_C5RL17 Transcriptional regulator, AraC family n=2 Tax=C... 132 1e-29 UniRef50_C9L911 Putative transcriptional regulator n=1 Tax=Blaut... 132 1e-29 UniRef50_Q1QUA4 Transcriptional regulator, AraC family n=1 Tax=C... 131 2e-29 UniRef50_C9A7I8 Transcriptional regulator n=4 Tax=Enterococcus R... 131 2e-29 UniRef50_UPI00017894C2 transcriptional regulator, AraC family n=... 131 2e-29 UniRef50_UPI0001788255 transcriptional regulator, AraC family n=... 131 2e-29 UniRef50_UPI00016C01F8 transcriptional regulator n=1 Tax=Epulopi... 131 2e-29 UniRef50_C5RE92 Transcriptional regulator, AraC family n=3 Tax=C... 131 2e-29 UniRef50_C6LL88 Transcriptional regulator, AraC family n=1 Tax=B... 131 2e-29 UniRef50_C6CVZ4 Transcriptional regulator, AraC family n=1 Tax=P... 131 2e-29 UniRef50_C4ZF62 Two-component sensor response regulator n=1 Tax=... 131 2e-29 UniRef50_C3RLG7 Transcriptional regulator n=2 Tax=Bacteria RepID... 131 2e-29 UniRef50_A5ZHU6 Putative uncharacterized protein n=1 Tax=Bactero... 131 2e-29 UniRef50_B5CQG2 Putative uncharacterized protein n=1 Tax=Ruminoc... 131 2e-29 UniRef50_C7GHR9 Transcriptional regulator, AraC family n=2 Tax=L... 131 2e-29 UniRef50_C7G8V4 Transcriptional regulator, AraC family n=2 Tax=C... 131 3e-29 UniRef50_A8S9Z6 Putative uncharacterized protein n=1 Tax=Faecali... 131 3e-29 UniRef50_A4XK77 Transcriptional regulator, AraC family n=2 Tax=C... 131 3e-29 UniRef50_Q03FA9 Transcriptional regulator, AraC family n=1 Tax=P... 131 3e-29 UniRef50_C4Z0X2 Two-component system, response regulator YesN n=... 130 3e-29 UniRef50_C0C2H5 Putative uncharacterized protein n=1 Tax=Clostri... 130 4e-29 UniRef50_Q5WL10 AraC/XylS family transcriptional regulator n=1 T... 130 4e-29 UniRef50_C6LDG4 Transcriptional regulator, AraC family n=3 Tax=C... 130 4e-29 UniRef50_A5ZYS8 Putative uncharacterized protein n=1 Tax=Ruminoc... 130 4e-29 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 267 bits (684), Expect = 2e-70, Method: Composition-based stats. Identities = 249/253 (98%), Positives = 250/253 (98%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGF ENTIKK Sbjct: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFNENTIKK 60 Query: 61 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA Sbjct: 61 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 Query: 121 CKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ 180 CKGFITLLTNGVLSVSGKVRNIVNMK AHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ Sbjct: 121 CKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ 180 Query: 181 ILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 ILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ HT Sbjct: 181 ILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQRHT 240 Query: 241 GMNTGNTMNALAI 253 GMNTGNTM+ALAI Sbjct: 241 GMNTGNTMSALAI 253 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 195 bits (496), Expect = 1e-48, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 129/240 (53%), Gaps = 2/240 (0%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M+ CSVI I +F+ + G ++VD++ R F Y F I + Sbjct: 4 MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISR 63 Query: 61 YLQCTNIQTVT-VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 YL+ N++ ++ +L+ + L+ +I++ N F E + F+CLS F+ Sbjct: 64 YLKANNLRDISDCREYPSYLKINFADFSLIKGLISWANHCAEYIEIFDESIAFTCLSAFS 123 Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 + K F L + S KV+ I++ + PW+LKDI LY+SESLLK+KLK+E +FS Sbjct: 124 SEKQFGVFLFECLKSTEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKEEGVSFS 183 Query: 180 QILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 +I+LD RMQ A+ L+ ++K+A+ CGYAS SYF Y FR++FG SP + S+ Sbjct: 184 KIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSESK 243 >UniRef50_C6UHW7 Putative AraC-type regulatory protein encoded in prophage n=2 Tax=Escherichia coli RepID=C6UHW7_ECOBR Length = 237 Score = 190 bits (484), Expect = 3e-47, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 118/236 (50%), Gaps = 2/236 (0%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M +CS+I + ++F I +D F G ++++ ++ F H + E T+ Sbjct: 1 MPYICSIILVLNSFGVRIGKEDILFKKGNAVLIEYNLKDLFSSNTDHLMIVDVEEKTVND 60 Query: 61 YLQCTNIQTVTVP-VPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 + + + +V +L LL ++A LN + + + +CL++ + Sbjct: 61 FFKNYTLSPFSVRRFYPSYLIVECEDFSLLKNLVACLNCDSKTVDVVRNQISLACLAVLS 120 Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 + K + L + S+ KV+ I++ + W+L DI LY+SESLLK+KLK E +FS Sbjct: 121 SEKIVQSFLFGSLNSLGCKVKAIIHSDISASWRLCDISSRLYMSESLLKRKLKDEGLSFS 180 Query: 180 QILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 +++L+ RM A+ L+ +V K+A CGY + SYF+ FR +FG P + + Sbjct: 181 KLILEERMMMAQRLLIYSNHTVGKVAGICGYDNASYFVSVFRGYFGVPPHQYLSRF 236 >UniRef50_B7LQH4 GadW HTH-type(AraC-type) transcriptional positive regulator of gadA and gadBC, in absence of gadX; repressor of gadX n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH4_ESCF3 Length = 245 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 120/233 (51%), Gaps = 3/233 (1%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M+ VCSV+ + + + K ++++D + + + E + Sbjct: 1 MAHVCSVVLVCRSLDIYYEKKHLNIIKDSLILMDEKLAFRIPHNCSWVRSLEIDECIVSN 60 Query: 61 YLQCTN--IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 YLQ Q + L P L+ + ++ E S +L FSCLS+F Sbjct: 61 YLQHIRHPAQYSGKHTRHRLLINHQPPLPLVRAIFDSFDAAETLTPTLSNMLYFSCLSLF 120 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 + + LL N + ++SGKV I+++ + W L+D+ + LY SESL+KKKL+ E T+F Sbjct: 121 SMHDELVPLLFNSINTLSGKVERIISVDTSRRWYLRDVAEKLYTSESLIKKKLQDENTSF 180 Query: 179 SQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 S+ILL +RM AK L+ + + IAE+CGY+STSYFI FR+++G +P + Sbjct: 181 SKILLASRMARAKTLLELNQMPLTVIAEKCGYSSTSYFINTFRQYYGVTPHQY 233 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 187 bits (475), Expect = 3e-46, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 1/233 (0%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M VC I I N L + G++L++ ++ R + Y + EI E+T++ Sbjct: 7 MPGVCYFILIKKPINFQFLKDFLILNYGDVLLLKHSERDFLQSYSDKYLEIELNEDTVRN 66 Query: 61 YLQCTN-IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 YL N + + P LR S LL MI +NS+ H +F + + FS LS+F+ Sbjct: 67 YLSYYNHCEKQFLETPPCILRKSFAYPDLLISMIDNINSQNHIHPDFKDAIFFSLLSVFS 126 Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 LT+G+ + SGKVR+I + WKL+D+ D LY+SESL+KKKL E T+FS Sbjct: 127 DVANLRAFLTSGMPTFSGKVRSIFLSDVSKHWKLRDLADYLYMSESLIKKKLLLENTSFS 186 Query: 180 QILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +ILLD RM A L++ + ++E CG++STSYF+ FR+++ +P++ K Sbjct: 187 KILLDTRMSLAIKLLKQNHPIKYVSEMCGFSSTSYFVCLFRQYYECTPRKYLK 239 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 187 bits (474), Expect = 5e-46, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 3/233 (1%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M VCSV+FI +F+ I + +F + +V + +R + + + T Sbjct: 1 MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLS 60 Query: 61 YLQCTNIQTVTVPVPAK--FLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 + N + K ++ P L+ + + + + E L S L++F Sbjct: 61 FFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMF 120 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 + + + + + + K+ I++ W LKDI + +Y SESL+KK+L+ E T+F Sbjct: 121 KKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSF 180 Query: 179 SQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 ++IL D RM++AK LI S+N +A++CGY STSYFI AF+ ++G +P Sbjct: 181 TEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 186 bits (472), Expect = 7e-46, Method: Composition-based stats. Identities = 89/228 (39%), Positives = 141/228 (61%), Gaps = 1/228 (0%) Query: 3 LVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYL 62 +VC VI ++ F I K F ++L+ DN ++ F + + E+ E ++KY+ Sbjct: 2 IVCYVILVNRPFETEIAGKKLFFQKNDVLLTDNISQSFFLRHPGNVTELRIDECIVRKYM 61 Query: 63 QCTN-IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC 121 + + IQ V F++ + LL+ ++ L+ ++ FSE + F+CLSIF+ Sbjct: 62 ESADRIQHSDSAVSVPFIKTTFSHIALLHNVMQNLSLQKTLPQQFSEQMFFACLSIFSTH 121 Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQI 181 +GF+ LL + SV+ KVR I+ P+ W++KDI + LY+SESLLK+KL++E+ +FSQI Sbjct: 122 RGFMFLLFRCINSVALKVRYIICSSPSRAWRVKDISNSLYMSESLLKRKLQEEKVSFSQI 181 Query: 182 LLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 LLD RM +A+ LI + SVN+IA +CGYAST YFI FR++FG +P + Sbjct: 182 LLDIRMHNARQLISSKLSVNQIAIRCGYASTPYFISVFREYFGITPHQ 229 >UniRef50_P63202 HTH-type transcriptional regulator gadW n=57 Tax=Enterobacteriaceae RepID=GADW_ECO57 Length = 242 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 128/235 (54%), Gaps = 3/235 (1%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M+ VCSVI I +F+ + + + IL+++ + F + + E T+ Sbjct: 1 MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLDIDELTVCH 60 Query: 61 YLQCTNIQTVTVPVPAK--FLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 YLQ + + +K L + P L+ + N N S +L SCLS+F Sbjct: 61 YLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESGVNSPILSNMLYLSCLSMF 120 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTF 178 + K I LL N + +VSGKV +++ A W L+DI + +Y SESL+KKKL+ E T F Sbjct: 121 SHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAERMYTSESLIKKKLQDENTCF 180 Query: 179 SQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 S+ILL +RM A+ L+ + ++ IAE+CGY+STSYFI FR+++G +P + ++ Sbjct: 181 SKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQ 235 >UniRef50_C6UPG2 Putative envelope protein encoded within prophage CP-933N n=34 Tax=Escherichia coli RepID=C6UPG2_ECO5T Length = 237 Score = 178 bits (452), Expect = 1e-43, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 3/231 (1%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK 60 M +VCSVI + N + + G +++ +R F + K + + + Sbjct: 1 MVVVCSVIMVCSPINIFLEKDTLSLKPGSVVLATKCIRALFLMHYGKVKIFDINHSIVSQ 60 Query: 61 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 YL+ + T T + L E A + S+ + L+ +CLS+F + Sbjct: 61 YLEIQHKLTRTHLTDVPLYLSLEPNNPALAE--ALITSQRFSGDTTDMFLMMACLSLFES 118 Query: 121 CKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ 180 + + L+ + S+S KVR I+ + W L I L++SESLLK KLK E FS+ Sbjct: 119 DERILLFLSGCLSSISAKVRAIIQTDISASWTLGAIALRLHMSESLLKIKLKNEGHMFSR 178 Query: 181 ILLDARMQHAKNLIRVEGSVNK-IAEQCGYASTSYFIYAFRKHFGNSPKRV 230 +LL+ RM+ A N++ + +AE+CGY+S SYFI F +++G P R Sbjct: 179 LLLEERMRVAVNMLCSRHGYGQAVAEKCGYSSWSYFISVFHRYYGFPPDRY 229 >UniRef50_A8SRM1 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SRM1_9FIRM Length = 296 Score = 160 bits (406), Expect = 3e-38, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 10/242 (4%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKYLQCTN 66 + + + Y G+ +++ + E + + GF+ L Sbjct: 47 LEGEGDFYVKGAHYHLKKGQGFLIEPDTPATYISDEHHPWRYVWFGFSGRCAHDTLSSIG 106 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 + T P + + +M+A+ N+ H +L+ LS+ A + Sbjct: 107 L---TQNQPIFTCEDGDKLKKYVFDMLAH-NTSGHADHYRLMGMLYLALSVIANAQKD-K 161 Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDA 185 L + + + + P K++++ D + I+ S KQ + + L + Sbjct: 162 LEAPSGNAYVNHAISYIQNHYSMPMKVEELSDYVGINRSYFSDLFKQYTGMSPVKYLQNF 221 Query: 186 RMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNT 244 R+ A++++ E SV IA CGY S F FRK G SP R ++ + T Sbjct: 222 RITKAQHMLTISELSVESIAFSCGYQSAEAFHKIFRKTTGLSPNAYRLGKRQRTLSSQET 281 Query: 245 GN 246 N Sbjct: 282 MN 283 >UniRef50_UPI0001692C08 transcriptional regulator (AraC/XylS family) protein n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692C08 Length = 288 Score = 157 bits (396), Expect = 4e-37, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 88/244 (36%), Gaps = 17/244 (6%) Query: 2 SLVCSVIFIHHAFN----ANILDKDYAFSDGEILMVDNAVRTHFE---PYERHFKEIGFT 54 +C +HH + K+ G+ +++ +E ++ + F Sbjct: 38 PRLCDYYLMHHVISGKGIFMYRGKELELKAGDTFLIEPEELVRYEADQVNPWMYRWVAFQ 97 Query: 55 ENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC 114 + + L+ T + V R + + L + +++ L ++ H + L+ Sbjct: 98 GKGVPEALEKTGFSSSRCIVHT---RDNQNVSELFSTILSVLQDKKEGAHQKALGYLYVL 154 Query: 115 LSIFAAC----KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKK 170 G ++ K + ++ + A ++ + D L + + L + Sbjct: 155 FGELCEAIYPKTGIGMRTSSESGRTVQKAIHYLSTQYAEDISIETMADNLGYNRAYLSRI 214 Query: 171 LKQE-QTTFSQILLDARMQHAKNLIRV--EGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 KQE T LL R+ A+ L+R E ++ +IA G+ YF F++ + +P Sbjct: 215 FKQETGLTPVTFLLKLRIDKARFLLRQRMELTIEQIASSVGFHDPLYFSKQFKRFYKCAP 274 Query: 228 KRVS 231 Sbjct: 275 TEYR 278 >UniRef50_C3RN82 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RN82_9MOLU Length = 267 Score = 156 bits (394), Expect = 7e-37, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 96/245 (39%), Gaps = 15/245 (6%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRTHFE---PYERHFKEIGFTENTIKKYLQCTN 66 + ++ ++ Y G+ ++ V T+++ + I F + ++YL+ N Sbjct: 24 LSGQGEYHVNNQVYQIKAGDAFLIMPNVVTYYQADQHEPWTYLWISFDGSKTRQYLKRCN 83 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEE--RNHHNFSELLLFSCLSIFAACKG- 123 + + V ++ L IA L + ++ F + L++ S A Sbjct: 84 LDEHNLVVHCDYI------NELRETTIAILAHNKLSYSNELFIQGQLYTFFSFLAKSANI 137 Query: 124 -FITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQI 181 + + K + + +I D L ++ S L K+ + + Sbjct: 138 TYNDNVAPNYNPYVDKAIEYIQNNYQEMVTVNEIADYLSLNRSYLTTLFKKHLHLSPQEF 197 Query: 182 LLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 LL RM A++L+ + ++N+IA CGY++ F AF +P+ K+++ ++ Sbjct: 198 LLKYRMMRAEDLLTNTDLTINQIAFSCGYSNQLSFSKAFSNSHQMAPRDYRKQFKLVDNS 257 Query: 241 GMNTG 245 MN Sbjct: 258 RMNDP 262 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 9/243 (3%) Query: 5 CSVIFIHHAFNANILDKD-YAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQ 63 C V+ + K+ + + +++ + + + IK YL+ Sbjct: 9 CIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISHDIIKDYLR 68 Query: 64 CTNIQTVTVPV------PAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSI 117 N +PV P L + + + +E + + LLF+ LS Sbjct: 69 FLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRALLFTVLSR 128 Query: 118 FAACKGFITLLTNGVLS-VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT 176 F K F++L+ + + VS V I+ W L + CL +S SLLKKKLK E T Sbjct: 129 FLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENT 188 Query: 177 TFSQILLDARMQHAK-NLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 ++SQI+ RM++A L+ +++++++ CGY STSYFI F+ +G +P ++R Sbjct: 189 SYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHR 248 Query: 236 CQS 238 ++ Sbjct: 249 ERT 251 >UniRef50_C6LM61 Putative raffinose operon transcriptional regulatory protein RafR n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LM61_9FIRM Length = 252 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 95/249 (38%), Gaps = 16/249 (6%) Query: 15 NANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTNIQTVT 71 + + Y G++ ++ V +E ++ IGF + ++ L+ T Sbjct: 8 YLEMGEAHYTLEKGDVFLIPEGVEAWYEADKETPWSYRWIGFEGVSARECLESAGF---T 64 Query: 72 VPVPAKFLRASNVPTGLLNEMI--AYLNSEERNHHNFSELLLFSCL-----SIFAACKGF 124 P + +R + G +++M+ L E N +L+F+ L A + Sbjct: 65 PQKPVRKVRCLDKVGGYIDQMLKCHQLYYENELKRNALLMLVFAELITDNRKNLAGMGKY 124 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 + +N + ++ ++ D + ++ S L ++ + + L+ Sbjct: 125 PSEHRYPSSVYVEHAIEYINENYSKRLRINELADYIGVNRSYLTSSFQENIGCSPREYLM 184 Query: 184 DARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGM 242 RM+ AK L++ + VN++A GY F F+ G SPK KE + + G Sbjct: 185 KLRMEKAKTLLKNPDIQVNEVAAMVGYTDPLAFSKIFKSRTGRSPKEY-KEEKSRLVVGK 243 Query: 243 NTGNTMNAL 251 G+ + Sbjct: 244 KKGDCTGNV 252 >UniRef50_C5EK80 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C5EK80_9FIRM Length = 291 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 83/230 (36%), Gaps = 9/230 (3%) Query: 22 DYAFSDGEILMVDNAVRTHFEP---YERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKF 78 Y GE ++ + + + + F +K+ L+ + T+ P Sbjct: 64 TYHIKSGEGFLIHPKQVNTYSADRDHPWEYTWLEFDGLRVKEALELAGL---TMDNPVYH 120 Query: 79 LRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSV-SG 137 A ++ L NEM+ N +++ + L + + + + Sbjct: 121 SNARDLSLELKNEMLYIANHSDQSPFHLIGHLYLFLDYLTRSSSSRRMMRGGKLQDFYIR 180 Query: 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR- 195 + + + + ++DI ++ S K + + + L+ RM A L++ Sbjct: 181 EATSFIEQNFQNDISVEDIAAFCNLNRSYFGKIFRDAVGKSPQEFLISYRMTKAAELLKL 240 Query: 196 VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTG 245 E ++ I GY S +F AF+K +G SP+ E + S TG Sbjct: 241 TELTIKDIGNAVGYPSQLHFSRAFKKTYGISPREWRSENKIASGTGKGKM 290 >UniRef50_A8RR78 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RR78_9CLOT Length = 281 Score = 153 bits (387), Expect = 5e-36, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 81/239 (33%), Gaps = 13/239 (5%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE---IGFTENTIKKYL 62 + I Y G++ ++ E I F+ +T+ +L Sbjct: 43 IYYLLSGKCKMFINQDIYYLEPGDMTIIPPLEVHKALYEPSWEAERFGIYFSRDTVTSFL 102 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA--- 119 + + + E++A + EE+ ++ ++ L S L Sbjct: 103 SLCGREAFGHIFSQPKRTIPSEFRPKIEELLAQMQDEEKQGDSYCQIQLCSLLHQILVVL 162 Query: 120 ----ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-E 174 + L ++ + +N L + +S + KK K Sbjct: 163 GRCQEARREGHALEEAEEAMV-RAARYMNQHYQEGVTLGQVAAFANMSPTYFSKKFKSST 221 Query: 175 QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 F + L R+Q A +++R + SV +A CG++ +YF FR+ G SP+ K Sbjct: 222 GLCFKEYLNYIRVQKASDMLRNTDLSVTGVAMACGFSDGNYFGDVFRRLTGVSPREYRK 280 >UniRef50_B1SDU2 Putative uncharacterized protein n=1 Tax=Streptococcus infantarius subsp. infantarius ATCC BAA-102 RepID=B1SDU2_9STRE Length = 288 Score = 153 bits (386), Expect = 7e-36, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 85/232 (36%), Gaps = 6/232 (2%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFE---PYERHFKEIGFTENTIKKYLQCT 65 + I G++ ++ ++ + + +GF+ + + L T Sbjct: 57 IVDGKGKFTIDGITTQLKTGDMFILPKGKVAFYQADGEHPWTYLWVGFSGSKAENILSKT 116 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFI 125 + + + L L+ L + L + Sbjct: 117 QLLDHYFCHSTLESKVLDQIVKLTQFRDQKLDDVTELQLTAELYKLLAFLMK-EFPSKAM 175 Query: 126 TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ-TTFSQILLD 184 + + + + +V+ I++ + +P K+ +I L ++ S L K K+E + L+ Sbjct: 176 SDSSILIQNYIKQVKKIIHTQYGNPLKISEIAKKLNLNRSYLYKIFKEETDYSLKDYLIQ 235 Query: 185 ARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 RM+ + +L+ R +++IA G+ F AF+KHFG SP K + Sbjct: 236 IRMEKSADLLTRTTFHISEIANAVGFPDALAFSKAFKKHFGQSPSHYRKALK 287 >UniRef50_D1PMJ1 Transcriptional regulator, AraC family n=2 Tax=Ruminococcaceae RepID=D1PMJ1_9FIRM Length = 285 Score = 152 bits (385), Expect = 9e-36, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 70/228 (30%), Gaps = 8/228 (3%) Query: 8 IFIHHAFNANILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKYLQC 64 + + + + +G++ + + E + +GF K +Q Sbjct: 47 LVVAGKGVYQVGGVSHTLQEGDLFLAKPNQLITYAADETDPWEYYWVGFNGACANKLVQQ 106 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 T + P + L + E + + L + + Sbjct: 107 TPFSDL---HPVHHCKDPQAVREALYNIYLSRGPEPQCEALMTGYLYIFMAHLMKEARDA 163 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQILL 183 + + + + +H + DI + +S S L + + L Sbjct: 164 MPNVGSSSSQYVLSAIKYIQFNYSHDISVDDIAKAVGVSRSHLYRVFMANVGQSPIDYLT 223 Query: 184 DARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 + R+ A +L++ S+ +IA G+ YF F+K G P + Sbjct: 224 NYRISEACSLLKNSNLSIAEIAVSVGFFDQFYFSRVFKKVKGVPPSKY 271 >UniRef50_B5XZ22 Transcriptional regulator, AraC family n=7 Tax=Enterobacteriaceae RepID=B5XZ22_KLEP3 Length = 287 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 80/195 (41%), Gaps = 3/195 (1%) Query: 45 ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHH 104 I F + ++ LQ N + +TV + LR L + + L + + Sbjct: 84 PCLLLSILFDKQRLECSLQHWNGKAITVVEKRQALRRGPRVGSFLLQALNELRMQPQ-EQ 142 Query: 105 NFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISE 164 + ++ S LS G ++ ++ +R ++ A P + + Y+S Sbjct: 143 RTARSIVVSLLSHCHDLLGSQAQTSSRSQALFEAIRQYMDAHYAEPLSRESVAQAFYLSP 202 Query: 165 SLLKKKLKQEQ-TTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKH 222 + L ++ F++ L R++ A+ L++ + V IA CG+A ++YF FRK Sbjct: 203 NYLSHLFQKCGPMGFNEYLNHIRLEQARMLLKGHDMKVKDIAHACGFADSNYFCRLFRKT 262 Query: 223 FGNSPKRVSKEYRCQ 237 SP ++Y Q Sbjct: 263 TERSPSEYRRQYHSQ 277 >UniRef50_C6IWJ9 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWJ9_9BACL Length = 284 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 80/240 (33%), Gaps = 21/240 (8%) Query: 9 FIHHAFNA-NILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKYLQC 64 FIH + + + + G+ + + E + IGF + + L Sbjct: 47 FIHSGRGIVKVEGETFELTGGQAFLAYPERVIFYQADEVDPWTYSWIGFNGEQVAEILSR 106 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNH-------HNFSELLLFSCLSI 117 T + + +P T L+ ++ LN E ++ + + + Sbjct: 107 TRLTPASPVLPM--------DTHLMPQLYELLNEAEESNTTRDLRLQTLLYEFMTLLVEL 158 Query: 118 FAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQT 176 A + T + + + ++ + + + + + L K Sbjct: 159 VPASGDADSTRTQAKDAYIHRCLDFLHSHYSEEMSVGQLAAIVGLDRKYLSSLFKRATGM 218 Query: 177 TFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 Q LL RM+ A L+R S+ ++A GY F F+K G SP ++++ Sbjct: 219 PPQQYLLKYRMEKACALLRNGHYSIAEVARSVGYQDALLFSKMFKKTVGTSPSDYREQWQ 278 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 69/249 (27%), Positives = 108/249 (43%), Gaps = 13/249 (5%) Query: 2 SLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKY 61 ++CS+ + + G ++ VD Y T+ TI Sbjct: 24 VIICSI---NETILTFNDGNKITIAPGNLIFVDPRQ-LTITHYGELENVALITQKTISLL 79 Query: 62 LQCTNIQTV--TVPVPAKFLRASNVPTGLLNEMIAYLNSEERN---HHNFSELLLFSCLS 116 + N ++ + P + + A L+ + L+ + +S Sbjct: 80 VSALNSDSLIHSYKAHNSPFIIRKCPDIAIFKYAANLSHKSDLSCAEKLRKRSLMLALMS 139 Query: 117 IFAACKGFITLLTNG-VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ 175 +F + FI LL ++ +V ++N A+ W L I L +S SLLKKKL+ EQ Sbjct: 140 LFLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLTLIASELLMSPSLLKKKLQAEQ 199 Query: 176 TTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 TT+SQ+L + RMQ A L+R + +V K A CGY S SYFI FRKHFG +P + Sbjct: 200 TTYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVSYFIAVFRKHFGITPTEY--QD 257 Query: 235 RCQSHTGMN 243 + Q H +N Sbjct: 258 KRQHHHDLN 266 >UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C356F7 Length = 268 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 81/231 (35%), Gaps = 11/231 (4%) Query: 15 NANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE---IGFTENTIKKYLQCTNIQTVT 71 I Y G+I+ + + E I F + + + V Sbjct: 36 KIFINHTLYYVEPGDIIFLKPGEIHRTTYHSSPVNERVTISFDGEYLDSMKELCGEENVE 95 Query: 72 VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELL----LFSCLSIFAACKGFITL 127 + N + E+I + EE FS L+ + L + C+ T Sbjct: 96 YIFRNSKVTVPNGNRSRVEELIRRIEYEETGQDGFSPLMKKGCFYELLVSLSRCQEAETD 155 Query: 128 --LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLD 184 + +P L+++ + ++S + +K K + + L + Sbjct: 156 HGRLEIGEETIEAAAKYIYDHYQNPITLEEVAELSHMSPAYFSRKFKAVTGFGYKEYLTN 215 Query: 185 ARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 R++ A L+ SV +IA++CG+ +YF AFRK G SP+ K Sbjct: 216 IRIREASRLLLHSACSVTEIADRCGFGDGNYFGDAFRKAKGVSPRAFRKMQ 266 >UniRef50_C9LA22 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C9LA22_RUMHA Length = 277 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 7/234 (2%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRT-HFEPYERHFKEIGFTENTIKKYLQCT 65 I K ++++++ + F E+ ++ I ++ Q + Sbjct: 45 FFVTKGTGYFQIEGKQIPVQKNDLILINPNIPHTEFGNKEQPWEYIALGIEGVQ--FQYS 102 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLS--IFAACKG 123 + R L+ ++ + +++ + + LL L + + Sbjct: 103 EKEAPYSYSVFSLSREHREIPWYLSTLVKEIQTQQEGYQTICQNLLELILLSVARSTRQE 162 Query: 124 FITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQIL 182 F++ V +N L + ++I++ L K + L Sbjct: 163 FLSAPRQKTTRECRLVEQYINEHYHEDITLDTLSALVHINKYYLVHAFKNYKGVSPINYL 222 Query: 183 LDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 + R++ A+ L+ SV KI E G++S SYF FR+ G +P K+ + Sbjct: 223 IQRRVEEARYLLESTNYSVTKIGEISGFSSQSYFSQTFRRLTGTTPNAYRKKKK 276 >UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=2 Tax=Clostridiales RepID=C4Z204_EUBE2 Length = 277 Score = 149 bits (376), Expect = 9e-35, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 94/240 (39%), Gaps = 14/240 (5%) Query: 8 IFIHHAFNA--NILDKDYAFSDGEILMVDNAVRT--HFEPYERHFKEIGFTENTIKKYLQ 63 IF + I Y F G++++V + + H + + N +++Q Sbjct: 35 IFYLSSGECTSFIDHNIYKFGKGDLVIVPSGCLHRTTYNGKGMHERIVISFRNEATEWIQ 94 Query: 64 -----CTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 + V + + LL+++I +S + F ++ L L Sbjct: 95 NQTGKELMENCMKPGVVNIPEKRRDYVVALLDKLIFENDSPDELSPAFIKVGLIELLLFI 154 Query: 119 AACKGFIT---LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QE 174 CK + + + +V + A L+ + D +S S L KK K Sbjct: 155 IRCKNYEENVIKEIDVDNRIIQEVATYIYEHYADNLSLEYVADKFNLSRSYLSKKFKTAT 214 Query: 175 QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 F + +++ R+Q+A NL+ S+ IA +CG+ ++YF AFRK G SP + K Sbjct: 215 GFGFKEYIINVRIQNACNLLLETNKSITDIAFECGFNDSNYFGDAFRKAKGISPHKYRKN 274 >UniRef50_C9RVZ3 Two component transcriptional regulator, AraC family n=4 Tax=Geobacillus RepID=C9RVZ3_GEOSY Length = 513 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 2/133 (1%) Query: 107 SELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESL 166 +EL + + GK ++ ++ A P L+++ + IS Sbjct: 381 AELKRAALDELDRIAADLEVWRQQQAYGKLGKAKDYIDRHYAEPLTLEEVAEQAGISPYY 440 Query: 167 LKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFG 224 K K+ TF + + R++ AK + + S+ +I GY +YF F+K G Sbjct: 441 FSKLFKEHFGITFIDYVTNVRIERAKEALAETDQSLKEICFSVGYNDPNYFSRVFKKQTG 500 Query: 225 NSPKRVSKEYRCQ 237 SP K+ + + Sbjct: 501 LSPSEYRKKVQAR 513 >UniRef50_UPI0001C353D2 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C353D2 Length = 286 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 83/237 (35%), Gaps = 14/237 (5%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK------YL 62 I F+ I + G+IL+V++ PY+ ++ + F + + +L Sbjct: 46 IISGTFHVTINETTRNAVPGDILLVNSGGLHGGTPYDCVYECLVFPVSLLSSQTYASEFL 105 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK 122 + Q + + LL + A + + LL+ + + + Sbjct: 106 NRLDRQDLILDEYFP-AGDDTAIHSLLERLFALMQDSDEGGKLQCLGLLYQFMGLLLQDR 164 Query: 123 GFIT-----LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQT 176 + L T+ + + V N + L ++ +S + Sbjct: 165 RYTASDKSDLSTHRNIYLLKNVLNYIEAHYTEKITLHELARTAGMSSKYFCHFFSEMTGR 224 Query: 177 TFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 T + R++ A L+ S+ IA CG+ SYF AF+K+ G SP + K Sbjct: 225 TPIDYVNYYRVERACCLLAGIGHSITDIAMLCGFNDVSYFTRAFKKYKGISPGQYLK 281 >UniRef50_Q0TS97 Transcriptional regulator, AraC family n=6 Tax=Clostridium RepID=Q0TS97_CLOP1 Length = 285 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 13/245 (5%) Query: 5 CSVI-FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK--- 60 C +I + F I + +I+ V + + P + ++ I F + K Sbjct: 41 CEIIRILEGEFILFIDKEKILAKKNDIIFVHSGIFHGGLPNDCIYECIVFDMKLLLKDNN 100 Query: 61 ------YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC 114 Y + + + +P+ +N T L M E L+ + Sbjct: 101 ACTKQIYDIVNHNKVIAHKLPSNVQALNNCCTSLFEAMRVKSTGYEFIAQGALYYLIGTI 160 Query: 115 LSIFAACKGFITLLTNGVLSVSGK-VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 L K + K V ++ + +P L+D+ +S + + Sbjct: 161 LENQLYVKNNKYTKKTKERFLQLKNVITLIENEYQNPLTLEDLSKASGMSPKYFCRFFHE 220 Query: 174 E-QTTFSQILLDARMQHAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 T + L R++ + L+ E S+ +IA CG+ SYFI F+KH G +PK+ Sbjct: 221 MINKTPIEYLNYYRIEISCEKLLATELSITEIALNCGFNDVSYFIKTFKKHKGVTPKQYL 280 Query: 232 KEYRC 236 K + Sbjct: 281 KSLKA 285 >UniRef50_A7B7P4 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7P4_RUMGN Length = 253 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 93/240 (38%), Gaps = 12/240 (5%) Query: 5 CSVIFIHHAFN--ANILDKDYAFSDGEILMVDNAVRTHFE---PYERHFKEIGFTENTIK 59 C ++ + ++ Y G+ ++ T ++ + +G + + Sbjct: 17 CYLLHLCLEGEGVFYSGEERYPIKQGQGFLIHPGKLTFYQADSVNPWSYLWVGIGGHDAE 76 Query: 60 KYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 KYL+ + + + +L+ M + S + + + +L L++ Sbjct: 77 KYLRLAGLSARNPIFSCTQIDTAKSY--ILDMMKHHALSA--ANEIYIQGILMQFLALLV 132 Query: 120 ACKGFITLLTNGVLSV-SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTT 177 G SV + + ++ +P +++I D L ++ S L + K Q + Sbjct: 133 EDAGCTVSPQQNTSSVYINQAISYIHKNYQNPLTVQEIADYLSLNRSYLTELFLKTVQLS 192 Query: 178 FSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 Q L R+ ++ L++ S+ IA CGY+S+ F AFRK G SP K+ R Sbjct: 193 PQQFLTRYRITKSEELLQSSSLSIQNIAYSCGYSSSFSFSKAFRKVNGLSPSEYRKQKRG 252 >UniRef50_Q71VU1 Transcriptional regulator, AraC family n=21 Tax=Listeria RepID=Q71VU1_LISMF Length = 780 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 92/257 (35%), Gaps = 11/257 (4%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE-IGFTENTIKKYLQCT 65 V I + ++ + +G++L++D E E + + ++ Y + Sbjct: 28 VFAISGQITIKVSEQKFYLQEGDVLVLDRNTFYTIEGNEDNLFINLTISDTFFAHYYEDY 87 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYL-------NSEERNHHNFSELLLFSCLSIF 118 Q + G L + ++ L + + + L+ F Sbjct: 88 -FQHSFKFFSKESDPGRERVVGSLRKSVSELLIASATKKRANKLEAQSALFQILLLLTRF 146 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTT 177 + ++ V + L++ ++SE+ L + K+ Sbjct: 147 LKKGIPSSARKEVNDKRISRIIREVEERFDEALSLREFAQKEFLSEAYLSRYFKKTTGLG 206 Query: 178 FSQILLDARMQHAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 F Q L + R++HA L+ S+ +IA + G++S +F F+ HF +P E+ Sbjct: 207 FLQYLTEVRLKHAIQDLLHSAESITEIALKNGFSSQKHFSEVFKFHFELTPSEYRAEHHV 266 Query: 237 QSHTGMNTGNTMNALAI 253 +++ ++ + +I Sbjct: 267 ETNLLIDNKTSELGASI 283 >UniRef50_C9KMM6 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMM6_9FIRM Length = 241 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 87/238 (36%), Gaps = 8/238 (3%) Query: 2 SLVCSVIFIHHAFNAN-ILDKDYAFSDGEILMVDN-AVRTHFEPYERHFKEIGFTENTIK 59 +C ++ + I + Y G +++ ++ V F + ++ Sbjct: 5 DHLCELLLVSQGAGIYMIDGRRYTAQKGNLIIYNSRTVHDEFGGSGSNLVTYCIAIGGLR 64 Query: 60 KYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 + P + LR + + + E ++H + L + ++ A Sbjct: 65 IDGLPADHLLPDGYCPVQPLRQHFA---EVQSLFDAIEKEAKSHAEIANYLTMALITKLA 121 Query: 120 ACKGFITLLT-NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTT 177 A L +++ + R ++ +L DI + + L K E + Sbjct: 122 AFLREEGLQEEQQTPTLAARARAFIDKNYKEAIRLGDIATATHTNAYYLSHLFKAEIGLS 181 Query: 178 FSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 + ++ R+ A+NL+ + ++ +IA Q GY +++YF F+ +P +++ Sbjct: 182 PMKYVILRRIGEAQNLLINTDMTITQIAAQVGYNNSNYFQNVFKGALDMTPGEYRRKW 239 >UniRef50_A5Z7W7 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7W7_9FIRM Length = 334 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 10/229 (4%) Query: 11 HHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTNI 67 H I K Y+ S G IL+ + H+E + + FT + + L N+ Sbjct: 91 HGTIYYYIDKKQYSISAGGILIYKPSELLHYEFFLKDAPDIYWVHFTGDNVDNILGELNL 150 Query: 68 QTVTVPVPAKFLRASNVPTGLL-NEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 T F+ + +++I+ L + + + + S +L+ L + IT Sbjct: 151 STK-----HAFMGTICPEYDTIFDKIISELLNRKLHFMDISSILMLELLYTISRDICTIT 205 Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQILLDA 185 +++ + KV I N + + I L S S L K K + L + Sbjct: 206 YISSKNDLILEKVLEIFNTNYPNKISITSIAKELNYSSSWLSKTFTKHFGLSPKAYLTNL 265 Query: 186 RMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 R++ AK+++ S+ ++AEQ G+ YF F G +P + +++ Sbjct: 266 RIEKAKSMLLSTMSIRQVAEQTGFPDQMYFSRVFTNAEGITPSQYRQKH 314 >UniRef50_C3WEF1 Putative uncharacterized protein n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WEF1_FUSMR Length = 285 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 82/242 (33%), Gaps = 8/242 (3%) Query: 8 IFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEP---YERHFKEIGFTENTIKKYLQC 64 I + + +K Y G+ +++ + T ++ + IGF +KYL+ Sbjct: 40 IVLEGKGIFVVDNKKYFLEKGQGFIIEPNIVTFYQADAKNPWKYFWIGFDGEGAEKYLRE 99 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 I P + LL EM+ N L I Sbjct: 100 LGI---IQHKPIFRTDKLDELFSLLKEMLKRKNLTLAEELKLQGLFYEFFSLIVEENSIE 156 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 N + K+ + + +I + + ++ S L K+ T + L Sbjct: 157 EKDEKNELNPYVDKIITYIKNNYWDDINVNNIIEYVGLNRSYLSTLFKKNMGITIQEYLT 216 Query: 184 DARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGM 242 R+ A L+ S+ +A CGY F A++K +G +P + K+ R ++ + Sbjct: 217 VFRLSRANELLDITNESIENVANSCGYKDPLVFTKAYKKKYGVTPTQHRKKDRKEAKENL 276 Query: 243 NT 244 Sbjct: 277 IK 278 >UniRef50_C6D8J8 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D8J8_PAESJ Length = 294 Score = 146 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 75/231 (32%), Gaps = 10/231 (4%) Query: 15 NANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTNIQTVT 71 K Y G+I ++ V ++E ++ + + + L+ + Sbjct: 58 TFEWQRKKYHLGKGDIFVIFPGVLFNYEADKAEPWSYRWVALQGRNVTEMLENVGVTITN 117 Query: 72 VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTN- 130 V + + + L S E ++ L+ FA ++ Sbjct: 118 PIVRGADSANLASIFETIEQELE-LKSGETITSLATDGWFRLLLAEFARLNTNKLHYSST 176 Query: 131 ----GVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDA 185 + + + P ++ + L + K KQ + Q + Sbjct: 177 KVLTDSERLVEQAIRWFQTQYMLPISIEKLATSLGYHRTHFTKVFKQLTSLSPKQYINQV 236 Query: 186 RMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 RM+ A+ L+ S+ ++ CG+ YF F+K G SP + +E + Sbjct: 237 RMERARELLNTNISIEQVGNSCGFTDPLYFSKQFKKWTGTSPTQYREELKR 287 >UniRef50_A7VRD3 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VRD3_9CLOT Length = 277 Score = 146 bits (369), Expect = 6e-34, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 8/233 (3%) Query: 5 CSVIFIHHAFNANI-LDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYL- 62 C ++++ I K + + G++++V+ + + F I+ + Sbjct: 43 CEILYVAGGAGEAILEGKKFRLAPGDLVVVNPGTLHEERSDAKAPLRLIF--LAIRDFAV 100 Query: 63 --QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 + L E++ +S+ + S+ L+ + L + Sbjct: 101 PGLPAGCLSQEKYRVLSCGEYRYKMDIYLRELLQETSSQIEFYQEISQGLVSALLVLVMR 160 Query: 121 CKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFS 179 + K++ ++ P L + + +YIS+ L K Q + Sbjct: 161 LIRINPEDEAALSQECQKIKEYLDQNFTSPITLDSLSETVYISKHYLSHLFKEQTGVSPI 220 Query: 180 QILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 + L RM+ A L+ E V+++++ GY + YF F++ +G SP + Sbjct: 221 KYLTSKRMEKACELLSETELPVSEVSKAVGYENPLYFSQVFKRIYGISPVKYR 273 >UniRef50_UPI0001C37EF8 AraC family transcriptional regulator n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37EF8 Length = 287 Score = 145 bits (367), Expect = 9e-34, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 88/232 (37%), Gaps = 9/232 (3%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRT---HFEPYERHFKEIGFTENTIKKYLQCTN 66 + + D+ G+ L +D E + F T K+Y + + Sbjct: 60 VRGRGELAVGDERSPLVQGDCLFIDCQQSFICKSSESEPWEIIWVYFNGCTSKQYHELFS 119 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 T +V P F + + E+ + E RN + L+I Sbjct: 120 ANTGSVFRPVSF----DKVVTAITEIASLCGEETRNSDILCSKQIMDILTIALTSDAAEE 175 Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDA 185 +G+ V + ++ + L+ + YIS+ L ++ K+ T Q +++ Sbjct: 176 QYDSGLRRKLAMVNSYIDDHFSEDLSLERLSSEFYISKFYLTREYKKIYGRTIFQHIINV 235 Query: 186 RMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 R+ + K L+R + S+++IA CG+ SYF F+K + K++R Sbjct: 236 RINYGKKLLRFSDRSIDEIAHMCGFNDQSYFARQFKKAENLTCFSYRKKWRE 287 >UniRef50_Q3ADL3 Transcriptional regulator, AraC family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADL3_CARHZ Length = 287 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 96/250 (38%), Gaps = 7/250 (2%) Query: 3 LVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYL 62 +C+++ + N L++ + ++ N+ + I N + + + Sbjct: 39 RICTILEGKKQVSINELERVEYTKENFAILAPNSKVDLNIENKTKALVIEVDNNVVNQLI 98 Query: 63 QCTNIQ--TVTVPVPAKFLRASNVPTGLLNE---MIAYLNSEERNHHNFSELLLFSCLSI 117 + + + + N +L ++ LNS+E+ +L + L Sbjct: 99 ERIQFELGYEEIKKITNYFFLCNFTEEMLETYKRIVRTLNSQEKGKEFLLDLYIQEMLYE 158 Query: 118 FAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ-T 176 +G ++ + + + + +N K+ DI + E + K Sbjct: 159 ILKFRGAKEIINSVKNARINNILSYINESYHKNIKVADIAKIFGMEEYEFCRYFKTYTCK 218 Query: 177 TFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 T + + + R++ AK L++ + SV + + GY + SYFI F+K F +PK+ KE + Sbjct: 219 TPKEYIKELRLKKAKELLQYQ-SVTETCYEVGYENISYFIKEFKKAFQMTPKQYQKEAKN 277 Query: 237 QSHTGMNTGN 246 GM+ Sbjct: 278 NKKDGMDPPT 287 >UniRef50_C6LLK3 Putative two-component response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLK3_9FIRM Length = 531 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 2/133 (1%) Query: 104 HNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYIS 163 ++ ++ + + C + S+ K R+ + + L D+ + +S Sbjct: 397 EDYEDIRTWFLEKMMQTCCSIRDKNEDRSESLVEKARSYMQENYSREISLDDVSKEVNVS 456 Query: 164 ESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRK 221 K K+E F++ L + R+ AK L+ E S+ +I GY +YF F+K Sbjct: 457 PYYFSKIFKEESGENFTEYLTNIRIGKAKELLENPELSIKEIGVMSGYTDPNYFSRIFKK 516 Query: 222 HFGNSPKRVSKEY 234 H G +P+ + Y Sbjct: 517 HTGITPREYRERY 529 >UniRef50_C2KWQ1 AraC family transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KWQ1_9FIRM Length = 311 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 10/224 (4%) Query: 15 NANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTNIQTVT 71 + + Y S G ++ V +E + IG + Sbjct: 71 TLFVNGEYYHLSKGNAFLLYPHVEAWYEADLTEPWSYFWIGVRGVDADSFFTEVGFSKEK 130 Query: 72 VPVPAKFLRASNVPTGLLNEMIAYLNS--EERNHHNFSELLLFSCLSIFAACKGFITLLT 129 P + + +N+++ + EE+ + L F+ L + Sbjct: 131 ---PVGIVHQMDNLLLYINKILQKQDYTIEEQLSRSAYMHLFFANLLRGKQEEAHWGGPL 187 Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQ 188 + S S +VR ++ + + + I + L K+ + + LL RMQ Sbjct: 188 KDLGSHSARVRAYLDEHYHEDISISALAKEMGIHRAHLFNSFKKDTGYSPKEYLLYIRMQ 247 Query: 189 HAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 +AK ++R S+ +IA GY F FR+ G SP + Sbjct: 248 NAKAMLRRTGKSIAEIAYMVGYHDPLSFSKIFRQKIGVSPLQYR 291 >UniRef50_A8SBA6 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SBA6_9FIRM Length = 286 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 28/228 (12%), Positives = 67/228 (29%), Gaps = 8/228 (3%) Query: 8 IFIHHAFNANILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKYLQC 64 + + + + + S+G++ + + E + +GF K Sbjct: 47 LVVSGKGIFEVGGRTWEVSEGDLFFARPSQLIRYTADEQQPWEYSWVGFNGACAHKLAAQ 106 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 T P + L + + + ++ L ++ Sbjct: 107 L---PFTDDAPVHHTSDPDGMRAALTNIYSSRGLQPQDEAAMVGYLYLFIAALMRETSAG 163 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILL 183 + + +H + D+ + +S S L + + L Sbjct: 164 KPHTASSSSQYVLNAIKYIQFNYSHDISIDDVAKSVGVSRSHLYRVFMLNVGKSPIDYLT 223 Query: 184 DARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 + R+ A L+R S+ ++A G+ YF F++ G P + Sbjct: 224 EYRINEACKLLRAGNLSIAEVAVSVGFFDQFYFSRVFKRAKGVPPSKY 271 >UniRef50_C6LL87 Transcriptional regulator, AraC family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LL87_9FIRM Length = 287 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 91/243 (37%), Gaps = 16/243 (6%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTN 66 ++ ++ + +K+Y +G+I+++ V I F + + LQ + Sbjct: 42 IMPTESGYSVHCGEKEYVLDEGDIIIICPGVIHEL-FSPPKGVRIIFLVSLAQIDLQELD 100 Query: 67 -----IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC 121 I + P KF + L+ E+ + L + C Sbjct: 101 LVISMISPAILISPEKFPQIHAQIHRLMLEIRDEYFRNLPYTESSIYAKFLEILVLVGRC 160 Query: 122 -----KGFITLLTNGVLSVSGK---VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 + N K + N +N A P L+++ S+ + KQ Sbjct: 161 YAEIAQHNFEAKNNKQQEYMEKFLFICNYINEHYAEPLSLEEVASLAGFSKYHFTRLFKQ 220 Query: 174 E-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 TTF + L R+ HAK+L+ SV I+ QCG+++ S F+ FRK G +P + Sbjct: 221 YADTTFYKYLNQKRIAHAKHLLVDKNLSVLDISLQCGFSNLSSFLRMFRKLTGFTPTELR 280 Query: 232 KEY 234 K Y Sbjct: 281 KMY 283 >UniRef50_A7VID9 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7VID9_9CLOT Length = 289 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 92/244 (37%), Gaps = 15/244 (6%) Query: 6 SVIFIHHAF-NANILDKDYAFSDGEILMVDNAVRTHFEPYER--HFKEIGFTENTIKKYL 62 +I++ F NI ++Y G+ +V + F I Y Sbjct: 41 EIIYVKSGFLTVNISGENYIGKPGDAFVVSPGNLHFMGSKTGTVDYFTFLFPLKYISFYT 100 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSEL----------LLF 112 + P+ + L S + E+ L + EL +L Sbjct: 101 DDILDDRLLEPLDSGRLMISPSVKDTIKELCEQLIEIYEAKKSERELNITTQIKTKIILL 160 Query: 113 SCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 + + T+G V ++ + + LK+ + ++SE + + K Sbjct: 161 QFILEMWEKGFIVENNTSGRNIVEKEMVSYIQQNFTGKISLKEFGEQFHLSEKYISRYFK 220 Query: 173 QE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 + T SQ + R+++AK L++ + SV + A + GY + SYFI +F+K +G SP + Sbjct: 221 EHFHITLSQYVAYLRLEYAKQLLQDTDISVTEAAMRSGYQNISYFIRSFKKTYGVSPLKY 280 Query: 231 SKEY 234 K+ Sbjct: 281 RKKQ 284 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 6/235 (2%) Query: 5 CSVIFIHHAFNA-NILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQ 63 C + + H + + + F+ G+++ D + + E T + L+ Sbjct: 8 CLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIQVDKCVENFVLVSRDTLSLFLPMLK 67 Query: 64 CTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHN---FSELLLFSCLSIFAA 120 ++ L + + +A L+ + + L+F+ LS+F Sbjct: 68 EEALKLHAHKKVPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEMLRKRALIFALLSVFLE 127 Query: 121 CKGFITLLTNGVLS-VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFS 179 FI LL N + + +V ++N AH W L I L +S SLLKKKL++E T++S Sbjct: 128 DTQFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEGTSYS 187 Query: 180 QILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 Q+L + RMQ A LI S+ ++A CGY S SYFIY FR ++G +P + Sbjct: 188 QLLTECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQER 242 >UniRef50_A8SS64 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SS64_9FIRM Length = 328 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 92/254 (36%), Gaps = 10/254 (3%) Query: 2 SLV--CSVIFI--HHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFT 54 V VI I I K Y G+ ++ T ++ + +GF Sbjct: 70 PYVRESYVIHIVKKGKGVFTIGGKSYELEAGQAFIIRPGEETIYKADDDDPWSYMWVGFH 129 Query: 55 ENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC 114 + +++ + + + + + + E E + +L + Sbjct: 130 GYRAEDFIESMGYKKDSPIIKIEQMDTCATCINNMLEYSQITRINEVKRQSALMMLFATI 189 Query: 115 LSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE 174 + + + + + + K + K+ DI D + IS S L K+E Sbjct: 190 MEDNTSGQQENDNVEYPSKIYVKAAVDFITEKYMNKIKIDDIADFIGISRSHLTGSFKKE 249 Query: 175 -QTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + + L++ R++ A +L+R +N IA QCGY + F AF++ FG SPK Sbjct: 250 MGVSPQEYLINFRLEKAASLLRSSKEQINIIAYQCGYEDSLSFSKAFKQKFGMSPKSFR- 308 Query: 233 EYRCQSHTGMNTGN 246 + TG G+ Sbjct: 309 NLEVELETGKAKGD 322 >UniRef50_A8RTE5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8RTE5_9CLOT Length = 310 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 77/241 (31%), Gaps = 4/241 (1%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFE-PYERHFKEIGFTENTIKKYLQCT 65 + + + I + Y + ++V+ E P + + + Y+ Sbjct: 41 FLVLEGTLDFFINSRQYTLKPNDFVIVNPNEIHSIECPDPNITIVLQIPMKSFEGYMSDE 100 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIA-YLNSEERNHHNFSELLLFSCLSIFAACKGF 124 + T ++ R + T + + F E L Sbjct: 101 SRITFADKDESQKARLVALVTAMYRTYEKGEFGYRLKVKSQFMEFLYLIVTEFRIEQIDK 160 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 + + L +V + L+ + + S L ++ QT + L+ Sbjct: 161 VRVQQKRHLDKLSQVTQYMKENYDKELSLEMVASRFGFTPSYLSHMFREYAQTGYRTYLM 220 Query: 184 DARMQHA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGM 242 D R+++A + L+ + V IA G+A F AF+K +G P + K+ + Sbjct: 221 DLRVKYAMRELLNSDRYVGDIALDHGFADARAFAKAFKKRYGCLPSQYRKQMNQKQVNQK 280 Query: 243 N 243 Sbjct: 281 Q 281 >UniRef50_B8FM47 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM47_DESAA Length = 277 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 26/221 (11%), Positives = 70/221 (31%), Gaps = 4/221 (1%) Query: 19 LDKDYAFSDGEILMVDNAVRTHFEPYERH--FKEIGFTENTIKKYLQCTNIQTVTVPVPA 76 ++ +++ + + + I +K + + + P + Sbjct: 55 KGASVVIGPKDVFLINPGEPHACKSEDGKHTYFTICVEPEALKSFASQISEKAQETPYFS 114 Query: 77 KFLRASNVPTGLLNEMIAYLNSEERNHHNFSELL-LFSCLSIFAACKGFITLLTNGVLSV 135 L+ E + + + L+ + S + + + Sbjct: 115 CLAAKDEELNSLIREFMTLVQKSGSTMEKEASLISILSTAILRYGDNPPEIRRISPHVQA 174 Query: 136 SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQILLDARMQHAKNLI 194 + R + A LK++ +S ++ + + L+ R++ A+ ++ Sbjct: 175 VNRAREYIKTHYAENLTLKELAGVACLSPFYFQRLFLENVGISPHDFLIQYRIKKAREML 234 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 S+ A G+ S+F AF++ G SP R + + Sbjct: 235 DQGSSLADAALDVGFTDQSHFTRAFKRVTGISPGRYIRNLQ 275 >UniRef50_B5CXD1 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CXD1_9BACE Length = 293 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 7/231 (3%) Query: 11 HHAFNANILDKDYAFSDGEILMVDNAVRTHFE---PYERHFKEIGFTENTIKKYLQCTNI 67 NI + +++ + + I FT + + N Sbjct: 65 EGEGWYNIGKGKCTVKKNDFFIIEAGTPHVYAASTSHPWSIYWIHFTGEQSHLFSELFNR 124 Query: 68 QTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITL 127 P + ++ + + L L+ L F F + Sbjct: 125 TIYIDDSPTARFNDRIQLFNEI--LVNLEMGYSIENLEYITLCLWYLLGSFRYIPQFREI 182 Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQILLDAR 186 KV N + L+D+ + + S + L ++ + + Sbjct: 183 NKPKTQDTIQKVINYMKANLDKQLTLEDMAESVNYSPTYLSTLFTQKSGMSPINYFNQLK 242 Query: 187 MQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 +Q A L+ + +IA + ++ YF F K+ SPK + + Sbjct: 243 IQKACQLLDFTDKKAKEIAFELAFSDPYYFSKVFTKYMHMSPKEYRMKKKG 293 >UniRef50_A6BIB0 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIB0_9FIRM Length = 285 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 96/246 (39%), Gaps = 13/246 (5%) Query: 6 SVIF-IHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE--IGFTENTIKKY- 61 ++F ++ + +I + ++++ D+ + + I + + Y Sbjct: 38 EILFCLNGSVRIHIEHEHLTLQRNQLIVFDSKEVHSIHSDSKLYMFLCIHVDKKQLSVYC 97 Query: 62 --LQCTNIQTVTVPVPA----KFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCL 115 L+ +I+ V + ++ + L + N+ + L+L + Sbjct: 98 PDLELYHIKCRPVSLDDSKSTPYIHLCQLAHDLTRTNVENKNTSAMRSDGTALLMLADLI 157 Query: 116 SIFAACKGFITLL-TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE 174 F+ T T + K+ + VN L+++ + + S + KQ Sbjct: 158 RYFSVYSLPGTTTGTGQSNDILRKIISYVNEHYTEKLSLEEVANQVGFSREYFCRFFKQH 217 Query: 175 -QTTFSQILLDARMQHA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 TF + L + R+ HA + L+ + S++++ ++ G+ + + F F++ +G +P++ Sbjct: 218 MGITFLRYLNEVRISHAGRILMNTDKSISEVMQESGFTNQTIFNRLFKEIYGMTPRQARN 277 Query: 233 EYRCQS 238 Y + Sbjct: 278 SYAENT 283 >UniRef50_UPI0001BC2F1F 2-isopropylmalate synthase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC2F1F Length = 288 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 90/240 (37%), Gaps = 14/240 (5%) Query: 6 SVIFI-HHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY-----------ERHFKEIGF 53 +I+I + + N I ++ + + G +V+ + F Sbjct: 41 EIIYIRNGSINITIDNELFTGTGGSFFIVNPGELHYMGSNDLNADYYTILFPLEFISFQS 100 Query: 54 TENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFS 113 + + V + + LL ++I E+ + ++LL Sbjct: 101 NDYVENMLFKPMRSSHVILTHSLPYSEIYAEIISLLEKLIYINKYEKGFYQLDCKILLLE 160 Query: 114 CLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 LS + + T+ + ++ VN L D+ D ++SE + + K+ Sbjct: 161 ILSNILSIPDILVKKTSNASDMRREIITYVNDNYLEKITLSDLADEFHMSEKYISRYFKK 220 Query: 174 E-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 TFS+ + R+ +AKNL+ S+ +A G+ + SYFI +F++ +G +P Sbjct: 221 HFNITFSKYVNHMRLLYAKNLLDTTNISITDVALSSGFPNVSYFIRSFKESYGKTPFSYR 280 >UniRef50_A8SGH8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SGH8_9FIRM Length = 288 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 33/246 (13%), Positives = 82/246 (33%), Gaps = 12/246 (4%) Query: 2 SLVCSVIFIH--HAFNANILDKDYAFSDGEILMVDNAVRT-HFEPYERHFKEIGFTENTI 58 + C+ +F + + + ++++V+ V + I ++ Sbjct: 38 THSCTELFYCLSGEGQFYLAGQLFPVKPDDMVIVNPQVEHTELSLNASPLEYIVLGVASM 97 Query: 59 KKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 + + LL+ ++A + + LL L Sbjct: 98 EFLFSKADTNYAIFNCR----ENRERMVTLLHMLLAEADRSLDGCETVCQDLLEVLLIWL 153 Query: 119 AACKGFITLLTNG---VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE- 174 C L +++ ++ L + + ++++ L ++E Sbjct: 154 VRCTTISLQLEEAAPTENRECAEIKRYLDTNYREDISLDLLAELAHLNKYYLAHTFQREY 213 Query: 175 QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + L R++ +K+++ S+ +I+E G++S SYF FRK G +P ++ Sbjct: 214 GISPITYLNRRRIEESKHMLGNTGYSLAQISELMGFSSPSYFSQCFRKAEGMTPNEYRRQ 273 Query: 234 YRCQSH 239 R Sbjct: 274 TRQGKR 279 >UniRef50_UPI0001788C0B transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C0B Length = 288 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 95/248 (38%), Gaps = 20/248 (8%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHF-----EPYERHFKEIG---FTENTIKK 60 + I D+ Y G+++ VD ++R I F + + Sbjct: 43 LLSGERIYFIKDRSYRVRAGDLVFVDRNAVHKTLDSGRPDHDRLVLYINPELFADLAVPP 102 Query: 61 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFS---CLSI 117 L + VP LR + + + M+ + +E + S LL L + Sbjct: 103 ELAEGLKEPFGWDVP--ILRLPSPASEAVERMVGDMVNEMIHPQAGSSWLLRHRTVELLL 160 Query: 118 FAACKGFITLLTNGV-----LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 FA + ++ + + V +N L ++ + IS L + K Sbjct: 161 FAYRSRHLGMVRSADTEPVLHPKTQAVVRYLNDNYRQALTLPEVAEAFRISPHYLSRLFK 220 Query: 173 QE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 Q TFS L R++ A+ L+R + S+ IA + G+++ S+F F++ SP+ Sbjct: 221 QTTGFTFSDYLNLLRVKEAQRLLRESDDSITDIAWRSGFSNFSHFGKMFKRTVQLSPRAY 280 Query: 231 SKEYRCQS 238 ++YR +S Sbjct: 281 RQQYRMRS 288 >UniRef50_Q9KAQ8 Transcriptional regulator (AraC/XylS family) n=1 Tax=Bacillus halodurans RepID=Q9KAQ8_BACHD Length = 287 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 89/238 (37%), Gaps = 6/238 (2%) Query: 8 IFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQC 64 + + + + K Y+ S G+ + +E ++ + F ++ L+ Sbjct: 46 VVLRGKGSFHCAGKTYSLSAGDSFFIYPKELVTYESDRTDPWYYTWVAFQGPFFEETLRS 105 Query: 65 TNIQTVTVPVPA--KFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK 122 IQ + V K + L + M + + + L++ + Sbjct: 106 AGIQPESPIVSLGGKGSMIKQLFYDLYSSMTELKVASSLKTNAYLRLIISEFIEQTTILD 165 Query: 123 GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQI 181 + + V +++++ P ++ I + + KK K+ + S+ Sbjct: 166 EHSQKEDHQLDQHIQDVIRLLSLRYFEPLSIETIAASYGYNRTYFSKKFKEYTGYSPSKY 225 Query: 182 LLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 LL+ RM+ A+ L++ ++ ++A GY YF F++ G +P +++ +S Sbjct: 226 LLNIRMKKAEALLQKSLTIQEVASSVGYRDPLYFSKQFKQWSGVAPSVFRQQHLKESE 283 >UniRef50_C6IWY8 Helix-turn-helix domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IWY8_9BACL Length = 293 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 81/251 (32%), Gaps = 17/251 (6%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY-----ERHFKEIGFTENTIKK 60 + I D+ Y G+++++ V P + F + Sbjct: 38 IYYLVSGERCYFIKDQIYRIGAGDLVLIPVNVLHKTSPSGKLSQPHERILVNFRTEVVSA 97 Query: 61 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 L + + LR S L+ +++A + +E++ E L+ Sbjct: 98 LLPGREEELEQLFAKYPVLRLSAEEQQLVQQLLARMLAEQKQQAGGYEEYCQLLLAELLL 157 Query: 121 CKGFITLLTNGVL----------SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKK 170 + +V +N L D+ + ++S L Sbjct: 158 NLLRMANARPNHDGEEGGGKRPYREIAEVARYINAHYDENLSLSDLANRFHLSPYYLSHL 217 Query: 171 L-KQEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 + T + R++ A L+R E V +IA + GY S ++F F+K SP+ Sbjct: 218 FPRVTGLTLVAYINRVRIEEACALLRETELPVTEIAYRVGYQSGTHFGRVFKKAKAVSPQ 277 Query: 229 RVSKEYRCQSH 239 +E R S Sbjct: 278 SYRREQRMLSG 288 >UniRef50_C4ZBY6 Transcriptional regulator, AraC family n=7 Tax=Clostridiales RepID=C4ZBY6_EUBR3 Length = 280 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 79/221 (35%), Gaps = 9/221 (4%) Query: 21 KDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAK 77 + Y G+ ++ + + I F +K+ L T + T P Sbjct: 63 QTYNIKSGQGFLIFPGQINTYIADDKLPWEYIWIEFDGLRVKEALTTTEL---TKNNPVY 119 Query: 78 FLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSV-S 136 + ++ L+ EM+ + ++ + + + K + + Sbjct: 120 HTHSKDIREKLVEEMLYITRHPSESPYHLIGHMYLFLDYLMQSAKSSKLVPGGKMSDFYI 179 Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR 195 + N + + ++DI I+ S L K K + + L++ RM A L++ Sbjct: 180 KEAMNYIEQNFQNDISIEDIAGVCGINRSYLGKIFKNSVGHSPQEFLMNYRMIKATELLK 239 Query: 196 -VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 S+ + GY + +F AF+ +G +P+ E++ Sbjct: 240 LTSLSIADVGSAVGYENQLHFSRAFKNIYGVAPREWRNEHK 280 >UniRef50_B8D1C2 Transcriptional regulator, AraC family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1C2_HALOH Length = 276 Score = 143 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 77/226 (34%), Gaps = 12/226 (5%) Query: 16 ANILDKDYAFSDGEILMVDNAVRTHFE---PYERHFKEIGFTENTIKKYLQCTNIQTVTV 72 + + Y G+ ++ + T+++ + IGF K YL N+ Sbjct: 54 FQVGENTYHLEAGQGFLICPDIVTYYQADRHNPWEYAWIGFHGLKAKDYLNRANLSLANP 113 Query: 73 PVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGV 132 F P + E + +R+ L++ LS + N Sbjct: 114 V----FSDTDGSPLRFIFEEMTAARKLKRSREIKLIGLIYVFLSHLIELNVSGSTPDNNS 169 Query: 133 -LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHA 190 + K + + K+ DI + + + S L + T+ Q L++ R+ A Sbjct: 170 KENYIKKAIEYIEKNYSRHIKVIDIANHVGLDRSYLWSIFNEFLNTSPQQYLINYRINKA 229 Query: 191 KNLIRV---EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 L++ S+ I+ GY F F+K G SP K+ Sbjct: 230 CELMKNRNLNLSIGDISRSVGYKDPLTFSKTFKKTKGISPLHYQKQ 275 >UniRef50_C4ZGK8 Two-component response regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGK8_EUBR3 Length = 285 Score = 143 bits (360), Expect = 7e-33, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 88/243 (36%), Gaps = 14/243 (5%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTH-FEPYERHFKEIGFTENTIKKYLQC 64 ++ + + I D ++ +I+ + + V+ P + + + K + Sbjct: 41 IIMPLEGGYTVQIGDDLVHLNENDIIFIASGVKHRLIAPDTGKRLILQIEWSAVSKIKEL 100 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFS-CLSIFAACKG 123 +I T+ P S + +++ +++E + SE +++S L + Sbjct: 101 NSILTLIAPAITLTPETSGDIHSNIRKLLLDISNEYQTDSFLSEAVIYSKILEVLVLIGR 160 Query: 124 FITLLT-------NGVLSVSGK---VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 T + + + + ++ L +I S+ + KQ Sbjct: 161 HHTASSCHFNVGRHKQQEYLERFLSICEYIDTHCTEDITLDEIAKIAGFSKYHFTRLFKQ 220 Query: 174 -EQTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 TF + L R++ A L+ SV + A Q G+A+ S FI F+ G +P Sbjct: 221 FTNNTFYKYLNQKRIELALTLLADPNISVTETAMQSGFANPSTFIRVFKTEKGCTPTEFR 280 Query: 232 KEY 234 K + Sbjct: 281 KMF 283 >UniRef50_B1BNT9 Transcriptional regulator, AraC family n=4 Tax=Clostridium perfringens RepID=B1BNT9_CLOPE Length = 285 Score = 143 bits (360), Expect = 7e-33, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 9/223 (4%) Query: 18 ILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKYLQCTNIQTVTVPV 74 K Y S GE ++ + E H+ I F K Y++ + T Sbjct: 61 FEKKYYEVSPGEGFLICPNEICSYQSDENDPWHYMWIEFNGIKAKLYMEEAGL---TPAN 117 Query: 75 PAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA-ACKGFITLLTNGVL 133 P L+ S ++ EM + +++ ++N L S+ + + L Sbjct: 118 PIFKLKESINSLKIIEEMKSIISNNKKNPSFLIGHLYLFINSLIEFSLNSTLNELDTLNE 177 Query: 134 SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKN 192 + N + ++D+ + +S+S + K+ TT + L+ +M A N Sbjct: 178 LYIREALNFIEENYNRNISVEDVSNRCNLSKSYFTRIFKKHMNTTPQEFLIQYKMLQACN 237 Query: 193 LIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 L++ S++++AE GY++ F AF+K F SP + + Sbjct: 238 LLKDKSLSISQVAELLGYSNQFNFSVAFKKKFNLSPSKWRTTF 280 >UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJ07_CALS8 Length = 283 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 16/242 (6%) Query: 6 SVIFIHHA-FNANILDKDYAFSDGEILMVDNAVRTHFE---PYERHFKEIGFTENTIKK- 60 +IF+ + D+ G++L++ R FE ++ F +GF K Sbjct: 35 ELIFVKKGNIEFWVEDEKIELRAGDLLIIKPHTRHKFEVVGNFKAEFIVMGFYLKPESKS 94 Query: 61 --------YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLF 112 Y +++ ++ P +R + L ++ ++ + + + Sbjct: 95 KIEALKEIYGFLESLENISSPFYFIHIRKRSNVFFCLESILQEAKENKKGLLLYIKSIEL 154 Query: 113 SCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 I + ++ +++ ++ K+ DI L++SES + + K Sbjct: 155 FIYITREMNNLEIKKGFDYSK-IAKFIKDYIDQNYMEDIKIGDIAKKLFMSESSISRLFK 213 Query: 173 -QEQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 Q + LL R++ AK + +++IA CG++S F F+K+ G SP Sbjct: 214 SQFGILPKEYLLSKRIEKAKEYLSVSNLKISEIAIMCGFSSLQRFNDIFKKYTGCSPTHY 273 Query: 231 SK 232 K Sbjct: 274 RK 275 >UniRef50_C9KMM0 Putative AraC-type DNA-binding domain-containing protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMM0_9FIRM Length = 248 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 78/232 (33%), Gaps = 3/232 (1%) Query: 6 SVIFIHHA-FNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQC 64 +I + + NI Y S G++L D+ + + + + + Sbjct: 9 EIILVTGGRGSFNIDTGHYLASPGDVLFFDSGILHDETTIDGDLATSCLGVSDFQLPGRR 68 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 N + P L A L L +L + Sbjct: 69 ANEMVGRLYAPQLSLDAQFDAVRTLFHTAVQLALAGDAPCVLDQLTCAILCKLDEELARH 128 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 S+ V+ ++ L+ I L + L ++ + Q ++ Sbjct: 129 GQPPRPQQESLGLTVKAYIDAHYRESITLQSIAAELNFNPYYLAHAFREHIGYSPMQYII 188 Query: 184 DARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 R+ A+NL+ + S+ +IA CGY +++YF F++ G +P + +++ Sbjct: 189 RRRIGEAQNLLIGTDRSITEIAFSCGYNNSNYFQSVFKRLVGMTPGQYRRDW 240 >UniRef50_UPI0001C3592F AraC-like transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3592F Length = 284 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 84/244 (34%), Gaps = 4/244 (1%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFE-PYERHFKEIGFTENTIKKYLQC 64 + + + + ++ ++ + ++V++ + P + T + YLQ Sbjct: 40 IFLVMKGEIDFYLGERHFSIGEKNFIIVNSNEVHSIDAPLPNRTLVLQIPVQTFEVYLQE 99 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 + + + + + + + E E + + L+ F Sbjct: 100 QPYLSFSRRSGEQNEKLMGLVMEMYRTYENKAYAWELKVSGLFEFVKYLLLTEFKDQAQA 159 Query: 125 ITLLTNG-VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQIL 182 ++ L ++ + P L+ + D S + L + K+ ++ L Sbjct: 160 PDIIRQKIHLEKLSEITEYMKNHYDEPLSLEKVADRFGFSPTYLSRIFKRYANISYRDYL 219 Query: 183 LDARMQHA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 D R+++A K ++ + + IA G+A + F AF K +G P K+ + + Sbjct: 220 QDLRVEYAVKEMVHTDHELGDIAVNHGFADSRAFAKAFAKRYGCLPSEYRKKLKEERGES 279 Query: 242 MNTG 245 Sbjct: 280 SEGK 283 >UniRef50_C4ZBG0 Transcriptional regulator, AraC family n=5 Tax=Clostridiales RepID=C4ZBG0_EUBR3 Length = 279 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 90/238 (37%), Gaps = 13/238 (5%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCT 65 I + + + G+ +V ++ + +GFT + L+ T Sbjct: 48 IISGKGRYTVNGSVHTLTPGDAFLVYPNTEVIYQADAQDPWEYTWVGFTGSDAATILRAT 107 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSEL--LLFSCLSIFAACKG 123 + ++ + + + +++ ++ N E+ L++ L++F + Sbjct: 108 DFTKA-----HPYIHSVSNGNEIKRQLMHIYDARGTEFENALEMTGRLYTTLALFVSAAT 162 Query: 124 FITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQIL 182 N S K ++ ++P ++DI + +S S L + + + + L Sbjct: 163 SKP-PQNSANSYVQKGIEYISANYSYPITVEDIASYIGLSRSHLFRSFQSILGVSPKEYL 221 Query: 183 LDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 D R++ A L++ S+ IA G+ ++ YF F K G SPK +Y+ Sbjct: 222 TDFRIKQACYLLKHSSLSITAIAGSIGFDNSLYFSKTFHKIKGLSPKEYRSKYKKAQE 279 >UniRef50_A3CML2 Arabinose (Multiple sugar metabolism) operon transcriptional regulator, putative n=29 Tax=Firmicutes RepID=A3CML2_STRSV Length = 290 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 89/235 (37%), Gaps = 12/235 (5%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCT 65 + K G++ ++ T ++ + +G T + Y + Sbjct: 57 ITKGKGQFHYKGKIVDLKAGDLFLLKPNELTFYQADKEEPWSYYWLGMTGGRVYDYFNHS 116 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFI 125 I + + R ++ ++ ++ Y + +++ ++ + Sbjct: 117 QIAEDCYLLANQ-ERKTDRIGKIVENLV-YFAEQTKSNQLAQLHIMGQLYELIFHLGSVA 174 Query: 126 TLLTNGVLSVSGKV----RNIVNMKPAHP-WKLKDICDCLYISESLLKKKLKQE-QTTFS 179 LS S ++ + I++ + +P ++D+ L + S L K+E Q++ Sbjct: 175 YKPQANTLSASQQLYLACKQIIDTQYPNPNLSIQDMAIKLSVHRSYLTTIFKEEHQSSPK 234 Query: 180 QILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + L RM AK L++ V IA G++ YF AF+K+FG SP ++ Sbjct: 235 EYLEYVRMHRAKQLLKSTREPVQFIAYSVGFSDPLYFSKAFKKYFGFSPSSFREQ 289 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 92/240 (38%), Gaps = 7/240 (2%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTN 66 +I + L + A GE ++ + F + I L+ Sbjct: 42 LIIVLRGAKVLSLQPELACRSGEFILAPAGIELQFMNLPEG-EYIAVVIGFCASDLEAIP 100 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 + A R LN+ I +++ L L+ +G+ + Sbjct: 101 VSAPPDRDGAAIARVDRTLAEFLNQWINWID----VSPPELWALRRKELAHLLYARGYGS 156 Query: 127 LLTNGVL-SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDA 185 LL + S KV ++ +PA W L +I L +SES L+++L+ E F +L Sbjct: 157 LLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLLAVSESTLRRRLQSENAGFRDLLESV 216 Query: 186 RMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNT 244 R+ +L + + IA+QCGY S S F F++ FG +P + + + G+ T Sbjct: 217 RLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERFKQRFGMTPSELRQTRLEELGEGILT 276 >UniRef50_C5EQL5 Transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQL5_9FIRM Length = 290 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 84/244 (34%), Gaps = 11/244 (4%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE---IGFTENTIKKYL 62 + I Y G+ +++ E E + FT+ + Sbjct: 45 IYYLLSGQCRMFIDQDIYYLKPGDAVIIPPLQIHRALYEEGLQAERYDMYFTKEEADAFH 104 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFS----ELLLFSCLSIF 118 + + + ++++L+ E +S + LLF L + Sbjct: 105 ASCGREGFERVFLNPRIAIPQPLRPGIEGLLSHLSHENGQEDAYSHVQQQSLLFQILVLI 164 Query: 119 AACKGFITLLTNGVLSVSG--KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQ 175 C+ + S + K +N++ L + +S + +K + Sbjct: 165 GRCQDTQQEKDSLNDSEAAIVKAARYINLQYREHLTLDAMAAMSNMSPTYFSRKFRASTG 224 Query: 176 TTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 F + + R+Q A +L+R +G+V IA CG++ +YF F+K G SP+ Sbjct: 225 FCFKEYVNYIRVQKASDLLRNTDGTVTSIAIACGFSDGNYFGDVFKKLTGLSPREYRNGI 284 Query: 235 RCQS 238 R + Sbjct: 285 RGDT 288 >UniRef50_B5YFJ6 Transcriptional regulator, putative n=2 Tax=Dictyoglomus RepID=B5YFJ6_DICT6 Length = 287 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 84/246 (34%), Gaps = 23/246 (9%) Query: 6 SVIFIHHAF-NANILDKDYAFSDGEILMVDNAVRTH------------FEPYERHFKEIG 52 ++++ + +Y ++GE L V++ R Sbjct: 45 EILYMERGIGKFYVDGYEYKLNEGEYLFVNSGSIHSGLEMIKRSIGYAIVFDLRLLYSEE 104 Query: 53 FTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLF 112 + +L N + + +I + + + + LLF Sbjct: 105 PDYCKHEYFLPLINKRY-----HIPSNLNDEHIRNDICRIIEVFKEKSYGYELYIKSLLF 159 Query: 113 SCLSI---FAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKK 169 + A + + V N +N L ++ + +S+ L + Sbjct: 160 DIFWRVFKYYAERRNQDGRLGYKIERIKDVLNYINQNYNKNLSLDELSRQVDMSKFYLCR 219 Query: 170 KLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 K+ + + + + R+ A L+ + SV++IA +CG+ + SYFI F+K+ +P Sbjct: 220 LFKESLRMSPVEYINKVRVDKAMELLINTDMSVSEIAFECGFDNISYFIKVFKKYMHTTP 279 Query: 228 KRVSKE 233 + K+ Sbjct: 280 LKFRKQ 285 >UniRef50_C6CVH4 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVH4_PAESJ Length = 287 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 79/238 (33%), Gaps = 14/238 (5%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTN 66 + K Y G+ +++ + ++ + F + + Sbjct: 50 LEGKGEFTCGGKSYPLQAGDTFLIEPEALVSYISNADEPWLYRWVAFNG---PQAAELAQ 106 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF-----AAC 121 +V P A L N + + + H + L L+ F + Sbjct: 107 AAGFSVANPVAETAAIRRVGVLYNHIFSIFRKNDPAAHLKAAGYLQLLLAEFCTVHKLSE 166 Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQ 180 + + ++ + ++ + A P ++ + + + + L + K+ + Sbjct: 167 DNAAMTNMDDTDKLIQQMIHYLSTQYAQPVSIEQMAESFGYNRAYLSRVFKRYTGESPIT 226 Query: 181 ILLDARMQHAKNLIRV--EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 LL R+ A+ +IR ++ +IA G + YF FR+ +G SP + R Sbjct: 227 FLLKLRIDKARQMIREREGLTIEQIAASVGLQDSLYFSKQFRRFYGLSPSAYRESMRQ 284 >UniRef50_C4FUL3 Putative uncharacterized protein n=2 Tax=Catonella morbi ATCC 51271 RepID=C4FUL3_9FIRM Length = 277 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 75/235 (31%), Gaps = 7/235 (2%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKYL 62 ++ +F N + G+ ++ + + + I F ++ Sbjct: 45 YILSGRGSFLENERHEAIQLGPGQGFLMPPNTVCSYTADQDDPWTYCWIEFNGLKAANFM 104 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK 122 + + + + L +I + E LL+ + Sbjct: 105 RQAGLNANNLIFTPHKPMIISSIKDTLETIIRNHSQHESFLIAQLYLLVDHLIRFSKHSP 164 Query: 123 GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQI 181 + + + + + D +++ + + KQE T SQ Sbjct: 165 QQRP--NEIHSFYIREAIHYIQDHYMDNPSVDQLADICHLNRNYFTRLFKQELHMTPSQF 222 Query: 182 LLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 +L R+ + L+ S+ IA+Q GY++ F AF++ G +P + YR Sbjct: 223 ILTYRINQSCELLASTNRSIRDIADQIGYSNQFNFSSAFKRVKGMTPMEWRRRYR 277 >UniRef50_C6JEP4 Two component transcriptional regulator n=3 Tax=Clostridiales RepID=C6JEP4_9FIRM Length = 531 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 2/138 (1%) Query: 98 SEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDIC 157 E ++ + L + C S+ + + +N L D+ Sbjct: 392 RELQSCTDIENLKKWFLDKTREICTKLENSKEKEAGSIIDRAKEYINENFRRDISLDDVS 451 Query: 158 DCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYF 215 + IS K KQE F + L + R+++A+ L++ S+ +I Q GY+ +YF Sbjct: 452 REVDISPYYFSKLFKQETGKNFIEYLTEIRLKNARELLQDSRLSIKEICAQSGYSDPNYF 511 Query: 216 IYAFRKHFGNSPKRVSKE 233 F+K+ G +P + Sbjct: 512 SRIFKKYEGVTPSEFRER 529 >UniRef50_B7AP83 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AP83_9BACE Length = 278 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 76/246 (30%), Gaps = 16/246 (6%) Query: 2 SLVCS--VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE-----IGFT 54 S C V N + Y G ++++ + F+ Sbjct: 27 SHDCYELVYLFSGECNILVSHTIYRMVPGTLVIIPPGEIHKTSYGSNDKVRQQRTALRFS 86 Query: 55 ENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC 114 V + A + + + +I + E + S ++ + Sbjct: 87 IKDTDWLCSALGKDFVKDNLTAGIIEVPDKRKEYIENLITRMIYENQMPDELSMGMVKTL 146 Query: 115 LSIFAACKGFITLL-------TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLL 167 F L + S V V L D+ IS S L Sbjct: 147 FQEFMIFVLRCKLYGDTSAHEIDAQNSTIQDVATYVYNNYDKQIYLDDVAKQFSISRSYL 206 Query: 168 KKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGN 225 KK KQ F + LL+ R++ A L+ S+ IA CG+ ++YF AFR+ G Sbjct: 207 SKKFKQTTGFGFKEYLLNVRIKEACRLLLETNHSITDIAFACGFNDSNYFGDAFRRIKGI 266 Query: 226 SPKRVS 231 SP + Sbjct: 267 SPNKYR 272 >UniRef50_C5D8H7 Two component transcriptional regulator, AraC family n=3 Tax=Geobacillus RepID=C5D8H7_GEOSW Length = 515 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 116 SIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QE 174 + GK ++ ++ HP L+++ + + IS K K + Sbjct: 391 QLQHMVHYIQAWRHQQANGKIGKAKDYIDEHYHHPLTLEEVAEYVGISPYYFSKLFKDRF 450 Query: 175 QTTFSQILLDARMQHAK-NLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 TF + + R+ AK + S+ +I GY +YF F+KH G SP K+ Sbjct: 451 GMTFIDYVTEVRIARAKKEMADPNKSLKEICFLVGYNDPNYFSRVFKKHTGMSPTEYRKK 510 >UniRef50_C9KJL3 AraC-type DNA-binding domain-containing protein, transcriptional regulator n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KJL3_9FIRM Length = 303 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 82/245 (33%), Gaps = 16/245 (6%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTH--FEPYERHFKEIGFTENTIKKYLQ 63 ++F+ + I Y +I+ V F +LQ Sbjct: 45 IILFLGGDVDYIIEGNSYHLQPDDIVFVAAGEIHRPVFGGDGEKTPYERIVIYIAPDFLQ 104 Query: 64 CTNIQTVTVPVPAKFLRASNVPTGL----------LNEMIAYLNSEERNHHNFSELLLFS 113 + + A V L ++++ + E + ++E+L Sbjct: 105 RLDERAKLAKCFAAAREQGRVMHQLPNRSHDLLFHMDKLEKTAHGEGFANGLYTEILFIE 164 Query: 114 CLSIF---AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKK 170 L + +L T +V +N A + + + +++S L K+ Sbjct: 165 FLILLNRSIEDHELESLDTVSYDPKIQQVLRYINEHLADDLTIATLANQVFLSRYYLMKR 224 Query: 171 LKQ-EQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 K + + R+ A++L+R E S+ +I+ G+ S F AFR F SPK Sbjct: 225 FKADTGYSLHAYIRSKRLLFARDLLRTETSIQEISRASGFRDYSTFSRAFRTLFHCSPKE 284 Query: 230 VSKEY 234 E+ Sbjct: 285 WRAEH 289 >UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C33 Length = 293 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 88/237 (37%), Gaps = 16/237 (6%) Query: 11 HHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCT----- 65 + + D+ G++ ++ F P + + + + L+ Sbjct: 46 EGSGYHYVEDQLIPIKRGDLFVIPIGTSHVFRPSSQDNQLVIYNCIFRTCLLEQLKSVIC 105 Query: 66 -----NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 + AK+L+ + L+ M + + L++ + + A Sbjct: 106 ESTKLHSLLYGSSPSAKWLQYQDKFDKFLSIMHGMFREYLKKGPRYEFLMMGQLIQVLAM 165 Query: 121 CKGFI---TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QT 176 + + ++++ ++ + +N A ++ + + ++S S ++ K+ Sbjct: 166 LQRYECDGSMVSTPTNNMDDAI-QYINDHFATNLTVQQVAERSFMSPSHFQRLFKKTTGV 224 Query: 177 TFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 TF Q L + R+Q L++ E S+ + A Q GY +F FRK G +P+ + Sbjct: 225 TFMQFLQNIRVQRCCELLKSTEISIQEAANQVGYQDMKFFHSLFRKKTGVTPREYRR 281 >UniRef50_A6NS86 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NS86_9BACE Length = 425 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 3/163 (1%) Query: 85 PTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVN 144 + +M + SE + EL L+ +L+ + K + Sbjct: 260 DQDTILDMNSRCFSESDHLRTAEELALWLTRMTDRFTDTVFSLVEVKHRDIICKAIEYLK 319 Query: 145 MKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAK-NLIRVEGSVNK 202 L+D + +S S + K+E +F+ L R+ + L+ + S+ + Sbjct: 320 RNCRDRVTLEDTAGHVGLSPSYFSRVFKEEVGESFNSYLTALRISRGRAMLLDTDASIAE 379 Query: 203 IAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTG 245 I ++CG+ SYF FRK+ G +P R R + G G Sbjct: 380 ICDRCGFDDQSYFTKVFRKYTGVTPGRFRAR-RGRPENGEEPG 421 >UniRef50_D1N7S2 Transcriptional regulator, AraC family n=2 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7S2_9BACT Length = 302 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 82/230 (35%), Gaps = 14/230 (6%) Query: 11 HHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHF---KEIGFTENTIKKYLQCTNI 67 F+ + Y G + +V + + E + + + + T + L + Sbjct: 79 RGNFHFQQNRRSYRVEPGGVFLVRHGEDSEMECCDCDYALKRTLALTGPMVGPLLTSLGL 138 Query: 68 QTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITL 127 V V PA + L + L + + S L F L + A Sbjct: 139 DRVDVLTPAAPEKLD----ALFDRAAGLLAGDAADKQQESAALAFRLLLMLAEENNQ--- 191 Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDAR 186 + ++ + + P + ++ + +S++ L++ ++ + L+ R Sbjct: 192 --ADTPEILQRILRYLEARLDQPVSIGELAEEFRLSQATLRRLFRKHLGESPVDFLIRRR 249 Query: 187 MQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 M+ A L+R E V IA Q GYA YF FRK G SP K + Sbjct: 250 METAMRLLRLTEQPVKWIAFQVGYAGALYFSAEFRKFTGESPSAFRKRSQ 299 >UniRef50_C6D174 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D174_PAESJ Length = 281 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 80/234 (34%), Gaps = 9/234 (3%) Query: 8 IFIHHAFNANILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKYLQC 64 I + + + Y + G+ + +R + + + F +++L Sbjct: 52 IVLGGKGYLHTDNMTYELTQGQGFLYGPGLRQTYHSDARDPWSIRWVHFYGARPEEFLDG 111 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 + + L L+ ++ S E + + L+ L+ Sbjct: 112 KGLDEPWLF----HLPDLAPVEALMERLLELGRSYEVDDEYAAASTLYELLTRIQTTASQ 167 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 + + + N V P+ L+ S +K Q +FS L Sbjct: 168 LNVSVHQTADKIRAAANYVRANCNQPFTLEQAAAIAGYSSHYFSRKFNQTFGKSFSDFLT 227 Query: 184 DARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 +AR+ AK L+ SV IA + G++ TSYF FR G +P + + ++ Sbjct: 228 EARILRAKQLLASTRLSVKLIALETGFSQTSYFSKCFRDQEGMTPLQFRERHQA 281 >UniRef50_Q00753 Msm operon regulatory protein n=8 Tax=Streptococcus RepID=MSMR_STRMU Length = 278 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 98/240 (40%), Gaps = 18/240 (7%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCT 65 + I + G+I ++ + T ++ + IGF+ + + L+ + Sbjct: 46 ILEGKGKLTINQHTLDLAAGDIFLLPKDISTFYQADLQMPWSYIWIGFSGSKAENILKQS 105 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK--- 122 + + +F S + L ++M+ + + +ELL+ L A Sbjct: 106 S-------LFKRFYCHSGRSSKLFSQMMTIIQFANTPLTSVNELLMVGELYKLLAALIEE 158 Query: 123 ---GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTF 178 + + + +V+ I++ + ++ DI L +S S L K ++ + Sbjct: 159 FPLSHLEESNSSTKAYVNQVKKIIHSQYGSSLRVNDIAKKLNLSRSYLYKIFRKSTNLSI 218 Query: 179 SQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 + +L RM+ ++ L+ + S+ +I+ G++ + F AF+ +FG SP + KE + Sbjct: 219 KEYILQVRMKRSQYLLENPKLSIAEISNSVGFSDSLAFSKAFKNYFGKSPSKFRKEIQNN 278 >UniRef50_C2EN40 AraC family transcriptional regulator n=2 Tax=Lactobacillus RepID=C2EN40_9LACO Length = 276 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 79/224 (35%), Gaps = 7/224 (3%) Query: 16 ANILDKDYAFSDGEILMVDNAVRTHFE---PYERHFKEIGFTENTIKKYLQCTNIQTVTV 72 K Y G+I + T+ E F + F N + KY++ N+ Sbjct: 53 FKSDGKVYHLKKGDIFYIQPHKTTYMEADENDPWTFYWVRFIGNLVPKYMKRINLSYKNP 112 Query: 73 PVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGV 132 + + L + E ++ + + +L + F + T Sbjct: 113 IMSQQDLPTVFQDVIDIVEYSQNSGPQDFYYQSKMFAILNALELHFPKENPHKNVTT--T 170 Query: 133 LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAK 191 + + + + D+ L I S L + K+ QT + + + R+ A Sbjct: 171 SDIYDRALRYIANNYEEQISVHDLVRYLNIDRSYLFRIFKKHSQTNPQEFITNYRLNKAS 230 Query: 192 NLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 +++ E +V +A CG+ S F F+K +G SP K+Y Sbjct: 231 EMLKSKENTVEYVALSCGFLSYQSFFRFFKKKYGISPSDYKKKY 274 >UniRef50_C6IZ62 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IZ62_9BACL Length = 293 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 38/237 (16%), Positives = 85/237 (35%), Gaps = 11/237 (4%) Query: 2 SLVCSVIFIHHAFNANILDKDYAFSDGEILM--VDNAVRTHFEPY---ERHFKEIGFTEN 56 L+ + + ++ + + G+ + + ++ R ++ F + F N Sbjct: 47 PLLLFQYTLSGEGVFELGERSHRVTAGQAFLAEIPSSHRYYYPQEASAPWEFLFLLFRPN 106 Query: 57 TIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLS 116 + + + VP +L + P L +I + + ++ ++ Sbjct: 107 VVLPLWRKFLSEAGAVP----YLPEDSAPVRLARMIITDAGAGRITDPYIASSCVYQFVT 162 Query: 117 IFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQ 175 A + + ++ A + + + + +S+ L ++ Sbjct: 163 ELARMQVTSQKNKENWPESVKRAAELMESNYAQMISIDQLSEHVGLSKYHLIRRFSDSTG 222 Query: 176 TTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 T L R + A +L+R S+ IAE+ GY+S SYFI AFR+ G +P Sbjct: 223 LTPGAYLTRVRTEKAMDLLRGTSLSIETIAERVGYSSGSYFIKAFRRLTGLTPGEFR 279 >UniRef50_C7G788 Transcriptional regulator, AraC family n=2 Tax=Bacteria RepID=C7G788_9FIRM Length = 292 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 72/214 (33%), Gaps = 12/214 (5%) Query: 26 SDGEILMVDNA---VRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRAS 82 G+ +D + + I F + Y A F Sbjct: 86 HAGDCFFLDCSGEYTHISTDEDPWELLWIHFNGPEARAYYTYFRDHHNWHFRSAHF---- 141 Query: 83 NVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNI 142 T L+N + + + E + L + I + + + Sbjct: 142 ---TELINAIESIIRYNEEPTDDTDLLTAQQIIHILTLICTESNEKNELLSDKLKTILHY 198 Query: 143 VNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSV 200 ++ L + + +IS+ L ++ K+E TT Q +L R+ +AK L+R S+ Sbjct: 199 LDEHYTENISLDQLAEQFFISKYYLSREFKKEFGTTVIQYVLAKRINNAKELLRYSNSSI 258 Query: 201 NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 +IA CG SYF FRK G + K + Sbjct: 259 EEIAHLCGIDDASYFNKVFRKMEGCTASEYRKRW 292 >UniRef50_C6BZV3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZV3_DESAD Length = 285 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 81/234 (34%), Gaps = 8/234 (3%) Query: 24 AFSDGEILMVDNAVRTHFEPYE---RHFKEIGFTENTIKKY-LQCTNIQTVTVPVPAKFL 79 G I +++ P RH + F+E ++ + + V P L Sbjct: 55 ILQPGSISIIEPETVHSNSPCCTERRHLRSFYFSEKFVRSLNYKLLGDENVPSPFRNILL 114 Query: 80 RASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKV 139 + L L+ E + + L + S L A + +S+ + Sbjct: 115 ENKQLWQNLSVLHHKLLSPVETLETDEAILSVLSGLYRHAGDGTIRPGSEDRRVSM---I 171 Query: 140 RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEG 198 + ++ L ++ D +E L + + T L+ R++ A+ +I Sbjct: 172 VDYLHAHAERNLSLAELADLAGCTEFHLIRIFRSHKGMTPHSFLIQLRLEKARAMIATNS 231 Query: 199 SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALA 252 + A CG++ S+ F+ +G +P++ K + G ++ L+ Sbjct: 232 PIADTAALCGFSDQSHLTRLFKIRYGLTPRQYQKASGGPPGSKEPFGKGVSGLS 285 >UniRef50_C6CVC0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVC0_PAESJ Length = 539 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 3/159 (1%) Query: 80 RASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKV 139 R VPT L + + E + + F EL ++ S+F I+ + Sbjct: 381 RTVGVPTEQLENLYIDAHVEVQRYATFRELSGWA-RSVFHQIMDRISARRPQYGEAVERA 439 Query: 140 RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVE 197 + + A L+DI D +++S + + + K+E +++ L+ RM+ AK L+ R Sbjct: 440 CEYITLHYAEDLMLQDIADHVHLSRTYISELFKKETGMNYNEYLMQVRMEKAKELLKRQT 499 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 V A GY++TSYFI F+ + G SP ++ R Sbjct: 500 LKVADAAALVGYSNTSYFIKLFKNYTGLSPSEYMEQQRS 538 >UniRef50_A9KRL7 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KRL7_CLOPH Length = 283 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 81/241 (33%), Gaps = 10/241 (4%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEP--YERHFKEIGFTENTIKKYLQ 63 + + F + +Y ++ + + P F + +L Sbjct: 43 IIRILDGEFRLFLEGTEYLLKKDDVAFIKDGKLHGGSPKDCTYECIVFDFNILRQRSFLT 102 Query: 64 CTNIQTVT-VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK 122 T ++ + + + T L M + SEE + L + + Sbjct: 103 DTFLRKIAHQKISIYPVHNKTCITSPLITMFDAIRSEEEGYELSILGSLLLFFAALQKNE 162 Query: 123 GFIT-----LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QT 176 + L + + ++ A P L+++ +S + ++ Sbjct: 163 YYSKEEEYDLKSQKAIEQLKASLELIVTDYAKPLTLQELSRECGLSPKYFCRFFQEYTNR 222 Query: 177 TFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 T L R++ A I + E ++ IA +CG+ SYFI F+K+ G +PK+ ++ Sbjct: 223 TPIDYLNYYRIEQACYQISQSEDTLTDIAFRCGFNDFSYFIKTFKKYKGITPKKYQMMWK 282 Query: 236 C 236 Sbjct: 283 E 283 >UniRef50_C0FP55 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FP55_9FIRM Length = 279 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 80/245 (32%), Gaps = 10/245 (4%) Query: 2 SLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYER-------HFKEIGFT 54 + +A I Y G+ +++ + F F + F Sbjct: 33 PYYEIYFLLSGNCSALINHSIYHLVPGDFVLIPQSAMHRFVYDCNSTVKRYNLFFTMDFA 92 Query: 55 ENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC 114 + + PV T L + + ++ + Sbjct: 93 ASLFHSDTKDILEHLFHYPVLHLTSLLQGNATRLFDTLYQETVGQDSCSQAVIPAYISLI 152 Query: 115 LSIFAACKGFITLLT-NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 LS+ + I L + + ++ P L + D +++S + KK KQ Sbjct: 153 LSLLVRNRDHIQLQDLDSAENAIQASARYISTHFQEPVSLHMVADYVHMSPTYYSKKFKQ 212 Query: 174 -EQTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 F + L R+ A L+ +V +IA +CG+ +YF AFRK FG SP + Sbjct: 213 ITGVGFKEYLTKTRLYEATELLTHTSLNVTEIAIRCGFNDGNYFGDAFRKEFGLSPLQYR 272 Query: 232 KEYRC 236 K + Sbjct: 273 KRQKN 277 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 7/227 (3%) Query: 16 ANILDKD-----YAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTV 70 I ++ + + +++ + + E + EIG + + + Sbjct: 116 LFIEGEEAHLRVVSIARPDMVDTEQKLHYELERLFSQWAEIGPAIGHSRHWFSRVELNYK 175 Query: 71 TVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTN 130 P A + P E + S + C + L Sbjct: 176 APPYRAMYSEVLGDPVLFEREHNQLSFPADLLDQPLSFANEAAAQLCEQQCAALLGELK- 234 Query: 131 GVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA 190 + G+VR I+ +P + ++ L + E L+++L E TT+ Q++L+ RM+ A Sbjct: 235 RTDGIEGEVRRILANQPGKYPGIIEVARALAMGERTLRRRLADEDTTYKQVVLEFRMELA 294 Query: 191 KNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 + +R S+ +IA GYA S F F KH G +P + ++ Sbjct: 295 ASYLRGNAMSIQEIAYVTGYADPSNFHRTFNKHQGLTPNAYRRLHQA 341 >UniRef50_A5Z9N2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z9N2_9FIRM Length = 293 Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 87/269 (32%), Gaps = 35/269 (13%) Query: 2 SLVCSVIFIHHAFNANILDK------------------DYAFSDGEILMVDNAVRTHFEP 43 + +CS+ + N + ++ Y + G+++ V Sbjct: 24 TYLCSIPLDFKSVNLHWHNEVELIVIKKGQGLVNVNLVTYTVNAGDVVFVFPGQLHSISQ 83 Query: 44 YERHFKEIG-------------FTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLN 90 + E + K + PV + L+N Sbjct: 84 KDYSIMEYENILFKSSLLKSSGYDLCNDKFIQPLLSGNLNIYPVINSNFDFHDSLYSLIN 143 Query: 91 EMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF--ITLLTNGVLSVSGKVRNIVNMKPA 148 E+ + + + LF + + G I ++ L + + V Sbjct: 144 EIDKLCDKRPYAYQLAVKSYLFQIFYLLISNCGLNQIKPISKKALEKIKTILSYVAEHFQ 203 Query: 149 HPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQ 206 +++I + S+S K K+ +F Q L D R++ A L+ + IA Sbjct: 204 DNISIEEIAGHCFYSKSYFMKFFKETMGMSFVQYLNDYRLEVAAKLLTTTSDDIINIAIN 263 Query: 207 CGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 G+ + SYF F+K +G +P + K+ R Sbjct: 264 TGFDNLSYFNRCFKKKYGITPGKYRKDAR 292 >UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM97_9FIRM Length = 283 Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 87/247 (35%), Gaps = 20/247 (8%) Query: 2 SLVCSVIFIHHA-FNANILDKDYAFSDGEILMVDNAVRTHFEPY-----ERHFKEIGFT- 54 C +I++ D DY + GE+L++ N V + + F + Sbjct: 35 PDFCVLIYVIDGCIYVTEGDTDYEVNAGELLILKNGVHHFGKKKIQKGTKWIFVHFRISA 94 Query: 55 ENTIKKYLQCTN-------IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFS 107 + + + + +P S L I Y S++ F Sbjct: 95 DCNASPFYPDASPLGAYDATAESILTLPKFLDSVSARFEKELKTFIEYAQSDDAYKKWFI 154 Query: 108 ELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLL 167 LF LS A + L++S ++ ++ P+ ++I Y+S + Sbjct: 155 NQRLFLLLSSLAVNTQGFS----NNLTLSDRICRYLSDNIGVPFSSENIEKRFYLSYKYM 210 Query: 168 KKKLKQE-QTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGN 225 K+E T Q RM A L+ S+ +IA++ G++ YF FR + G Sbjct: 211 SHLFKKEKGVTMQQYHNSVRMDEACRLLCSTLMSIGEIADKLGFSDVLYFSRCFRNYTGK 270 Query: 226 SPKRVSK 232 SP K Sbjct: 271 SPSAYRK 277 >UniRef50_C6CTF5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTF5_PAESJ Length = 294 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 82/254 (32%), Gaps = 25/254 (9%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTH-------------FEPYERHFKEIGF 53 ++ + +DY GE + V++ + F Sbjct: 44 LLVTEGTAVFRVDLQDYELQAGEAIFVNSGELHSGYVVGGKPCSFDAVVFHSSLFSSGSI 103 Query: 54 TENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLL---NEMIAYLNSEERNHHNFSELL 110 + + VPA R LL +++ +E+ + L Sbjct: 104 DYLFDRYISPVLEKRY---EVPAHLRREPGPGMELLAMLDQIFEVHRNEQAASELTIKGL 160 Query: 111 LFSCLSIFAACK----GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESL 166 LFS L+ + + V + A P L+ + + +SES Sbjct: 161 LFSILAKLVSLGKPSVRVKPEQEGYRIERLKTVIEYIEQNYAEPIPLQKLAELARMSESY 220 Query: 167 LKKKLKQ-EQTTFSQILLDARMQHAK-NLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFG 224 + K+ + + + R+Q A L + + + ++A G+ S SYF FR+ FG Sbjct: 221 FCRFFKRITTKSPIEYMNSYRVQQAASRLRQTDAKIMEVALDVGFNSLSYFNTVFRQRFG 280 Query: 225 NSPKRVSKEYRCQS 238 +P+ + S Sbjct: 281 CTPREYRSRLQVNS 294 >UniRef50_C5VY46 AraC-family regulatory protein n=8 Tax=Streptococcus RepID=C5VY46_STRSE Length = 278 Score = 139 bits (350), Expect = 9e-32, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 83/237 (35%), Gaps = 11/237 (4%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYL 62 +I F ++Y + G+ ++ +E + + F + +L Sbjct: 46 YIISGSGTFYDTSDQREYHLTAGQGFLISPDAICSYEADEKDPWTYIWLEFDGLKTEHFL 105 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK 122 + + + + S+ + +++A L+ +S C Sbjct: 106 RQAGLSKEQPIFSQREMPTSSPVYHEMKQILAL----HHQKSALVLGHLYLFISCLIDCS 161 Query: 123 GFITLLTNGVLS--VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFS 179 T + + N V + D+ ++ + K++ + Sbjct: 162 LTKTSSKHDENKEFYIREAINFVERNYEKAISVDDLAQVCNLNRHYFSRLFKEQMNISPQ 221 Query: 180 QILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 Q ++ R+ A L++ ++ +IAE+ GY++ F AF++H+ SP R K ++ Sbjct: 222 QFIIQYRLSEACELLKNTTKTLQEIAEEIGYSNQFNFSTAFKRHYQISPNRWRKIHK 278 >UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERJ9_9FIRM Length = 294 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 79/244 (32%), Gaps = 19/244 (7%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCT 65 ++ + ++ Y+ S G+I+ V + E L+ + Sbjct: 51 IIVIKKGSGIVSVDLTTYSVSAGDIIFVLPGQLHAISQKDNEIMEYE-NILFKSSLLKSS 109 Query: 66 NIQTVTVPVPAKFLRAS--------------NVPTGLLNEMIAYLNSEERNHHNFSELLL 111 S +NE+ + + + L Sbjct: 110 GYDLCNDKFIQPLFSGSLNICPVINNQTPYYPPVITAINEIDHLCDLRPYAYQLSIKAHL 169 Query: 112 FSCLSIFAAC--KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKK 169 F L + + I + L + + + ++DI + + S+S K Sbjct: 170 FQILYTLVSNCGQNKIKPINQKSLKKIKTILSYIANNFQENIAIEDIANYCFYSKSYFMK 229 Query: 170 KLKQE-QTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 K+ +F Q L D R++ A L+ ++ IA G+ + SYF F+K +G SP Sbjct: 230 FFKETMGVSFIQYLNDYRLEIAAELLTTTTDNILDIAFATGFNNISYFNRCFKKKYGVSP 289 Query: 228 KRVS 231 ++ Sbjct: 290 RKYR 293 >UniRef50_A4BH94 Transcriptional regulator, AraC/XylS family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BH94_9GAMM Length = 305 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 77/232 (33%), Gaps = 2/232 (0%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTN 66 + + A + D Y+ DG++L ++ E + + Sbjct: 36 LWVLQGAIRVQVNDHQYSLRDGDLLFINADDHHATEAASDDNLVLCLQHRFEELVNVSVA 95 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 T + A+ L E + N L L F++ Sbjct: 96 PGTSNPVLKARLNDLRTTLAHLWWEQKYQPAHWQLATENGLAQLQLILLRYFSSASPAPA 155 Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDA 185 + ++ + P L + + +SE+ L K + +T + L Sbjct: 156 ESRDDASWRIQQITRYLEAHYREPISLTSLSEHFGLSETYLSHYFKDKTGSTLVRWLTQL 215 Query: 186 RMQHAK-NLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 R++ +LI+ + +V ++A + G+ S F AF++ + +P ++ + Sbjct: 216 RLERCLPDLIQTDSTVAELALEHGFPSIKAFNSAFKREYQCTPSEFRQQQQS 267 >UniRef50_A5GD53 Transcriptional regulator, AraC family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GD53_GEOUR Length = 291 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 79/244 (32%), Gaps = 15/244 (6%) Query: 2 SLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEP--YERHFKEIGFTENTIK 59 V+ I K G+I+ +D H + I + + Sbjct: 53 PAYSFVLTFDSYTRLAIGGKTVLSQPGQIMAIDPDAVHHEMTADETPRYIAIFIDRDLFE 112 Query: 60 KYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC----- 114 K L P F + P + ++ +E E LL + Sbjct: 113 KELGRY-----PSIRPRPFRFRTFTPGREMMGLLKEFMNEAEARLPAREPLLAAIGTRIV 167 Query: 115 -LSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 I AA + G +V + + + +S S + K+ Sbjct: 168 HALIRAAHGIITPDASIGNRVEIHRVIEYIQTHAGKKLSIGQLAAVAAMSTSHFSRIFKR 227 Query: 174 E-QTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 E L R++ A+ L+R SV +A CG+AS S+F +FR+ +G SP Sbjct: 228 ETGHPPLAYLNRVRLEQARKLLRTGECSVTSVALSCGFASPSHFTDSFRRFYGQSPTDFL 287 Query: 232 KEYR 235 K Y+ Sbjct: 288 KSYK 291 >UniRef50_C7H5Z6 Transcription regulator, AraC family n=2 Tax=Ruminococcaceae RepID=C7H5Z6_9FIRM Length = 319 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 80/243 (32%), Gaps = 6/243 (2%) Query: 2 SLVCSVIFIH--HAFNANILDKDYAFSDGEILMVDNAVRT-HFEPYERHFKEIGFTENTI 58 + C+ +F + + + ++++V+ V + I + I Sbjct: 69 THSCTELFYCLSGEGQFLLSGQLFPVKPDDMVIVNPQVEHTELSLNASPLEYIVLGVSGI 128 Query: 59 KKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 + + R + LL E L+ E + E+LL + Sbjct: 129 EILFGKADSTYAIFNCRENRERMVTLLHMLLAEADRSLDGCETVCQDLLEVLLIWLVRCT 188 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTT 177 + ++ ++ L + + +I++ L K + Sbjct: 189 TLSLQVEESPRSDNRECVE-IKRYLDNNYREEISLDTLAEVAHINKYYLAHTFQKAYGIS 247 Query: 178 FSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 L R++ +K ++ S+ +I+E G++S SYF FRK G +P ++ R Sbjct: 248 PITYLNRRRIEESKYMLGNTGYSLAQISELMGFSSPSYFSQCFRKAEGLTPNEYRRQVRQ 307 Query: 237 QSH 239 Sbjct: 308 GQR 310 >UniRef50_UPI0001C36461 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36461 Length = 276 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 82/243 (33%), Gaps = 12/243 (4%) Query: 9 FIHHAFNAN-ILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQC 64 F+ Y +GE ++ T+++ + I F + + L+ Sbjct: 29 FVLKGKGIYRTGYGQYEIKEGEAFLIRPGEVTYYQADFEEPWSYAWIAFDGDGAEALLER 88 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 P + +G ++ S E N + + KG Sbjct: 89 Y---YPDHSFPVCAMGEITAVSGWFEGLLGAFGSAEENRERVLGYFYLIMACLLRSGKGG 145 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQILL 183 + + G + + ++P ++ +I + I + L + Q + Q L Sbjct: 146 VPVDEEG---YFKRAVAFIRHNYSYPIQISEIAGYVGIDRTYLYRIFMHQAGVSPKQYLS 202 Query: 184 DARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGM 242 R++ AK ++ + E + +IA CGY +S F F+K GN+P R + + Sbjct: 203 RYRLEEAKEMLVQTEYRITEIAYSCGYHDSSSFCRHFQKATGNAPARYRSMKKIKPGRES 262 Query: 243 NTG 245 Sbjct: 263 EEK 265 >UniRef50_C6D477 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D477_PAESJ Length = 305 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 88/258 (34%), Gaps = 21/258 (8%) Query: 2 SLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENT---- 57 + + V + + D+ S G + ++ F P + + + Sbjct: 46 AYLEIVYVMSGEGYHYVADEVNKTSKGSLYIIPIGTSHIFRPNGTANRLLVYNLCIRPDW 105 Query: 58 -------IKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELL 110 + +Y + T++ V P +L + P L F + Sbjct: 106 IGELGVWLSQYCRDTDVLHVLDGNPGTYLFLRDTPLELAPSFEQLHREFTEESWGFETTV 165 Query: 111 LFSCLSIFAACKGFITLLTNGVLSVSGK--------VRNIVNMKPAHPWKLKDICDCLYI 162 L L + + + +G + +N A P K++ + D I Sbjct: 166 LAGLLQLLTRISRKLKTQDSTGDQTTGSTRHSEFVSIVEHINRHIAEPLKMEQLADQAGI 225 Query: 163 SESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFR 220 S+ + +Q FS+ + + R++ A L+ SV IA++ GY ++F FR Sbjct: 226 SQRHFIRLFRQQTGMGFSEYVQNKRVELACQLLTGTSQSVADIAKKVGYQDPAHFREVFR 285 Query: 221 KHFGNSPKRVSKEYRCQS 238 K G +P + E +S Sbjct: 286 KVMGITPSQYRPEASNKS 303 >UniRef50_C6D3K3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3K3_PAESJ Length = 296 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 80/218 (36%), Gaps = 8/218 (3%) Query: 19 LDKDYAFSDGEILM--VDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPV-P 75 + G+ M + R +F P H+ I I+ L N + V + Sbjct: 68 GTETLRIQAGQAFMTEIPGDHRYYFPPDGSHWSFIFV---LIRPSLILPNWEEVKKQLGD 124 Query: 76 AKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSV 135 FL A + P LL M ++ + ++ +S Sbjct: 125 TPFLPAGSRPIRLLQSMYEEAHAGRVKEPYTASSYVYQFISELCRFALAPQEDAKEWPLK 184 Query: 136 SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI 194 + + ++ + L + D L +S+ L + + + + L R++ A L+ Sbjct: 185 VKEAVSYIDAHYENMISLDQLADQLSLSKYHLLRLFTRTVGMSPNDYLNQVRIKEAIRLL 244 Query: 195 R-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 + + SV +IAEQ GY+ SYFI FRK G +P Sbjct: 245 KESDWSVERIAEQVGYSGGSYFIKWFRKITGETPGSFR 282 >UniRef50_C7G923 Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G923_9FIRM Length = 280 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 97/250 (38%), Gaps = 17/250 (6%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHF----EPYERHFKEIGFTENTIKKYL 62 ++ I + + ++ R ++ E Y + + + K Sbjct: 30 LLLFGSPSELLIDGRLMRTAANSAILYTPGSRIYYRAAGEEYRNDWIRFRSDHSFV-KLF 88 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK 122 TN P P + LL A+ +SE + +LFS L + Sbjct: 89 PLTN-----TPFPVTDPEYCHQLFKLLTWESAFFSSESEANITHLLRVLFSKLR--EGIQ 141 Query: 123 GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQI 181 + + L K ++ P PW + + L++S S L+ +Q ++ Sbjct: 142 NESPGIHDHELVALHK---MIYNNPQLPWNINMMAAKLHLSPSHLQTLYHRQFGSSCMDN 198 Query: 182 LLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 +++ R++ A++L+ E S+ I+EQCGY + +F FR+H G +P + K S+ Sbjct: 199 VIEGRLRRAQDLLEYSEYSIRDISEQCGYNNVEHFCRQFRQHNGCTPGQYRKNASAGSNK 258 Query: 241 GMNTGNTMNA 250 + T NT+ Sbjct: 259 RLLTHNTLGG 268 >UniRef50_Q0SUX5 Lactose operon transcriptional activator n=9 Tax=Clostridium perfringens RepID=Q0SUX5_CLOPS Length = 279 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 83/234 (35%), Gaps = 6/234 (2%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRTHFEP---YERHFKEIGFTENTIKKYLQCTN 66 K Y G+I ++ ++ + + IGF+ + +YL T+ Sbjct: 45 TKGYGTFKFNGKVYTLKQGDIFILLKGMQVEYVASIDDPWEYYWIGFSGSNANEYLNRTS 104 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 I V + + + + E+ N + + + L ++ Sbjct: 105 ITNSCVANCKENSKIPQIILN-MCEISKTYNPSKSDDILLLKELYSLLYTLIEEFPKPFE 163 Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQILLDA 185 + + N +N H +++I D + +S S L K K + + L++ Sbjct: 164 YKDKELHTYIQDALNFINSNYMHSITVQEIADYVNLSRSYLYKMFIKNLGISPQRYLINL 223 Query: 186 RMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 RM A L++ + + ++A GY+ + F F KHF SP ++ Sbjct: 224 RMYKATLLLKGTKLPIGEVASSVGYSDSLLFSKTFSKHFSMSPLNYRNNQVNKT 277 >UniRef50_C5EG90 Putative uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EG90_9FIRM Length = 298 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 79/234 (33%), Gaps = 10/234 (4%) Query: 6 SVIFIHHAFNANILDKDY-AFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKY 61 +++I + Y G ++ + I FT N + +Y Sbjct: 50 QLLYIASGIAHFQKGETYVPLPAGSAVLYHPNHTQFYYYSAEDSSEVYWIHFTGNRVSQY 109 Query: 62 LQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC 121 L + + ++ N +I ++ N+ + L L + Sbjct: 110 LSDWGV----PDNDFYNVGINSRYISFFNHIIHEQQLKKENYMELCKYYLIQILILMNRG 165 Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQ 180 + N +S+ K ++ P + D+ +++ + ++ + Sbjct: 166 MKEASAPYNNHVSIINKTVTYLHEHYNEPISIIDLAKENHLTPNWFNHCFQEYYGMSPQA 225 Query: 181 ILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 LL+ R+ AK + S++ +A GY+ YF F++ G SP++ K Sbjct: 226 YLLNIRIDKAKEFLTNYMLSISDVALLTGYSDAFYFSRIFKRKTGLSPQQYRKN 279 >UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA55 Length = 275 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 11/229 (4%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQ 68 + I D++ G+++++ R + + Sbjct: 49 ILDGEGWVKIGDEELYPVPGQLVLMPARTRQSYSVISG-----RPYLKYWSHFSATVGDS 103 Query: 69 TVT--VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSE--LLLFSCLSIFAACKGF 124 V + VP + + N L + + + + E ++L +F + Sbjct: 104 DVFSWLNVPHCYDLSGNAEMPALFQQLVDAHRSDTLAARLREKSVMLDILSRVFEHQQPQ 163 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 I + KV+ + L+ + L++ + K K+ T + L Sbjct: 164 IHADKMEDMGRLHKVQQYIKNHLHEEITLEQMAGTLHLHPNYFIKYFKRHFGITPQKYLS 223 Query: 184 DARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 RM+ AK ++R S+ +IA+ G+ S +YF FRK G SP Sbjct: 224 LKRMEQAKLMLRTTSLSIKEIADATGFESANYFSKTFRKEVGYSPSEYR 272 >UniRef50_UPI000178921D transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178921D Length = 318 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 83/228 (36%), Gaps = 10/228 (4%) Query: 16 ANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVP 75 I F G+I+ +++ E ++ E ++ + + Sbjct: 74 ILINGMKLPFRQGDIIFINSNDLHRAYETENLVMDVIMFEPSLLSIDLKFDPDLMAPFRS 133 Query: 76 AKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFS-CLSIFAACKGFITLLTNGVLS 134 + + L ++ + E + L+ S + + ++ Sbjct: 134 LGNVDRQSPVHDELARLLRRMMEEYKARGTSYMSLIRSDLIRFLSLANRHLSSPAQEHRP 193 Query: 135 VSGK-------VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDAR 186 + G+ V + + + W L+++ D ++S S +Q T+ L+ R Sbjct: 194 IKGRGMHALKEVLRTMELHLDYGWTLQELSDLTHLSPSRFSALFQQAVGTSPHHYLIQLR 253 Query: 187 MQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + HA +L+ + + +IAE CG+ + S F F++H G SP + + Sbjct: 254 LTHAVHLLETTDQKIIEIAETCGFRNLSNFNRLFKQHVGASPSEIRER 301 >UniRef50_Q0SVP8 Transcriptional regulator, AraC family n=3 Tax=Clostridium RepID=Q0SVP8_CLOPS Length = 284 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 87/233 (37%), Gaps = 11/233 (4%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEP---YERHFKEIGFTENTIKKYLQCT 65 I + + Y + ++ T+++ + I F KKYL Sbjct: 54 IIDGEGTYYVNGQSYRLRKNQGFLICPNTLTYYKASKDNPWTYMWIAFNGIKAKKYLNYA 113 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFI 125 N+ + + +N M LN ++ + LL+ LS A K Sbjct: 114 NLNEDNLIF---EYTEDDSLEIYINRMFE-LNRMNYSNELEIQGLLYLFLSKLAMSKNEN 169 Query: 126 TLLTNGVLSV-SGKVRNIVNMKPAHP-WKLKDICDCLYISESLLKKKLKQE-QTTFSQIL 182 +L +N + K + +P K+ D+ + + ++ S L K+ + + + L Sbjct: 170 SLKSNNISDFYVEKAIEFMQNNYLNPDLKITDVANFVGLNRSYLTHLFKKSLKLSPQEFL 229 Query: 183 LDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 L+ R+ A +L++ SV I++ GY F F+K G SPK + Sbjct: 230 LNYRINEATSLLKNTNLSVGTISKSIGYNDQLTFSKVFKKVKGISPKTYRDNF 282 >UniRef50_C7G8V7 Putative raffinose operon transcriptional regulatory protein RafR n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8V7_9FIRM Length = 289 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 11/233 (4%) Query: 5 CSVIF--IHHAFNANILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIK 59 C +I + A + + Y GE + + E + + F N ++ Sbjct: 58 CFIIHYVMKGAGYLIVNHRKYHVKAGESFLTRPYTLIEYYPEEENPWEYMWVDFLGNQVE 117 Query: 60 KYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 +++ T + P L+ L +++ ++ + + +LL Sbjct: 118 NWVEHTQFEE---KNPVCSLKQEEKILPLFLKLLE-MDIYHQQRNEACGVLLSILGVYLD 173 Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAH-PWKLKDICDCLYISESLLKKKLK-QEQTT 177 ++ ++ + ++ +C+ L IS L + K + + Sbjct: 174 IFPVECVGRSDEDEKRMEMAVLLIKNHYHKSEFHIQRLCEMLNISRVTLYRLFKSKTGIS 233 Query: 178 FSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 Q LL+ R++ AK L+R+ SV A CG+ + YF F+++ G+SP R Sbjct: 234 PKQYLLNYRIEQAKLLLRMGTSVKNTAASCGFNDSFYFSRVFKEYTGSSPSRY 286 >UniRef50_C0CW55 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CW55_9CLOT Length = 286 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 79/232 (34%), Gaps = 8/232 (3%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTN 66 + + + + G+ ++ ++ ++ F +GF N + + T Sbjct: 50 MEGGGVYTLNGRKHPVRKGQAFLIYPSMPIDYQADAADPWEFCWVGFNGNDARLLMNATG 109 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 T P L+ LL + N + L + + Sbjct: 110 F---TPQNPVITLKDPERMEELLMNIYRCRGHHPHEFINMTAKLYELLAFLIQEASDPMP 166 Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDA 185 + + + + + P + DI + I S L + K + Q L + Sbjct: 167 AQSRTGVEHVQRACDFIASHYQDPITINDIAGHVGICRSRLYRVFKAHLSISPLQYLTEF 226 Query: 186 RMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 R++ A NL+ R + +V ++A G++ YF F+K G SPK K + Sbjct: 227 RLREACNLMNRQKATVKEVAYAAGFSDPLYFSTVFKKSLGQSPKEYMKSSKG 278 >UniRef50_Q4V1B1 MSM (Multiple sugar metabolism) operon regulatory protein n=15 Tax=Bacilli RepID=Q4V1B1_BACCZ Length = 301 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 78/237 (32%), Gaps = 10/237 (4%) Query: 5 CSVIFI--HHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIK 59 +I + + +K Y+ G++ ++ T + + + F + Sbjct: 41 SYIIHVVLDGKGKYYVKEKKYSLKKGDLFLIPPGESTFYRSDAEEPWLYAWLSFGGKVAE 100 Query: 60 KYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 + + +N + V + ++ ++ E + S N +EL Sbjct: 101 EIINFSNFKDDNYAVTSTNIQQ---YLEIILECMNCSYSTLENELKLNELTYRFLRLFLT 157 Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTF 178 + ++ + + + D+ + L ++ S L + + + Sbjct: 158 DGSSLSPGVKQKFSRLAIEAMIYIGKHYIEEITVSDVANHLAVNRSHLSRVFQNHFGISM 217 Query: 179 SQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 ++ R+ HA L+ SV I+ Q G+ S + F F+K +P K Sbjct: 218 KDWIIRMRINHAAYLLSMTNESVENISYQVGFHSLAAFSRIFKKVTKETPTHYRKRM 274 >UniRef50_C6IZS2 AraC family transcriptional regulator n=2 Tax=Bacillales RepID=C6IZS2_9BACL Length = 287 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 86/220 (39%), Gaps = 12/220 (5%) Query: 22 DYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKF 78 Y S+G+ ++ + ++ I FT + ++ T P Sbjct: 62 SYELSEGDGFLILPDQLVSYASDVAEPWRYRWIAFTGVKAAELVKRVGF---TPQQPVFR 118 Query: 79 LRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGV---LSV 135 ++ +L+ ++ +++ + H S LL ++ G + L +G + Sbjct: 119 QGGNSPIPAMLSSVLQAFQTKKNSSHLLSLGLLHQIMAEAQETLGMASALPSGESGVQRI 178 Query: 136 SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI 194 ++ + + + AHP ++ +C L + + L + K+E T LL R+ ++ L+ Sbjct: 179 VKQMIHYMASQYAHPVSIEQMCASLGYNRAYLSRIFKKETGFTPVTYLLKLRIDKSRQLL 238 Query: 195 RV--EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 R E S+ +IA G YF FR+ SP + Sbjct: 239 RERPELSIEQIAASVGLTDPLYFSRQFRRFHNESPSEYRR 278 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 12/233 (5%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYER-----HFKEIGFTENTIKK 60 V +H + + G+ L++ + + + + + Sbjct: 36 IVRVLHGRKTLRYAGGELTATTGQWLLIAGGQSFDVLNEPDAAQGYRSEWLMLGDEWVAQ 95 Query: 61 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 + + T+ + + L + + R L+ A Sbjct: 96 FFAQ-HPSRETLDLARVLRPDAAWDEAFLRVVQGV---QTRLPETVLAARTMELLAWLAQ 151 Query: 121 CKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQ 180 + +S ++R ++ A W++ D+ L +SE+ L+++L E +F + Sbjct: 152 AGAVFN--PHSAQRLSKQIRQLIAQDMAASWQIADVAQRLGMSEATLRRRLANEGASFRE 209 Query: 181 ILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +L + +M A L++ V ++A GY S + F FR HFG +P V K Sbjct: 210 LLGNIKMMRALTLLQTSPLGVAQVAYAVGYESPARFAAKFRAHFGCTPSDVRK 262 >UniRef50_UPI0001C35507 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35507 Length = 307 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 89/244 (36%), Gaps = 15/244 (6%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFE-PYERHFKEIGFTENTIKKYLQC 64 ++ I +++ + Y G IL + P F + + + Sbjct: 53 ILVPIENSYTVLANNHTYQLEPGNILFIPGLTLHEIMKPDWGERFIFMFNMDPLTSFHDY 112 Query: 65 TNIQTVTV-PVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC-- 121 ++++ V + P + + + ++ + F E +++ L Sbjct: 113 SSLEPVLLDPCFLTKRTTPGIYEHIYSRLMEISTLYFSSSITFREYSIYANLIDILTTIG 172 Query: 122 KGFITLLTNGVLSVSGK----------VRNIVNMKPAHPWKLKDICDCLYISESLLKKKL 171 + + L G + + K + + +N A P L+ + D S+ + Sbjct: 173 REYYDALFAGTENTAEKSYDYYQKFNSLLSYINDHFAEPLTLEKMADYTGFSKYHFTRLF 232 Query: 172 KQE-QTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 KQ +TF L R+Q A+ L+ + S+ IA Q G+ +++ F F+K+ SP Sbjct: 233 KQHTNSTFYDYLSRKRIQAAQTLLTTDASITSIAFQTGFNNSTSFTRCFKKYTNYSPSEY 292 Query: 231 SKEY 234 ++ Sbjct: 293 RTKF 296 >UniRef50_Q2RGN4 Two component transcriptional regulator, AraC family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RGN4_MOOTA Length = 548 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 32/241 (13%), Positives = 70/241 (29%), Gaps = 23/241 (9%) Query: 13 AFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGF-----------TENTIKKY 61 F + ++ + E +N + + Sbjct: 299 EFRLFYGGDQV-IHADD-VIARPSAGQFLPAPEEQELTQAIRMGDRQAAYRQAKNILMQL 356 Query: 62 LQCTNIQTVTVPVPAKFL--------RASNVPTGLLNEMIAYLNSEERNHHNFSELLLFS 113 L + + + L ++++ ++E N +++ Sbjct: 357 LLEQEKRPAILKMKLLELNTLAARAALEGGADPEAVSDLALASSTEFLTLDNLADMRERI 416 Query: 114 CLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 + A S+ + + + L+++ +Y+S K KQ Sbjct: 417 LERLMALVAQVAETREQRNSSLIDRASKYIEANFSQDLTLEEVARQVYLSPCYFSKLFKQ 476 Query: 174 E-QTTFSQILLDARMQHAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 F L R++ A+ L+ + V +IA + GY YF F+K G +P Sbjct: 477 FKGLNFIDYLTKVRLKAARELLLNTKLPVAEIATRVGYRDARYFGQVFKKQEGYTPSVFR 536 Query: 232 K 232 K Sbjct: 537 K 537 >UniRef50_B0C3V1 Transcriptional Regulator, AraC family n=5 Tax=Cyanobacteria RepID=B0C3V1_ACAM1 Length = 283 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 85/224 (37%), Gaps = 11/224 (4%) Query: 19 LDKDYA--FSDGEILMVDNAVRTHF-----EPYERHFKEIGFTENTIKKYLQCTNIQTVT 71 DK Y + G+IL+ + E + F ++ ++ L+ + Sbjct: 58 DDKTYTGLYRKGDILITPAKIPLFVRWEGEENCLQIQLTTQFLQSVARETLEQNSDLIEL 117 Query: 72 VPVPAKFLRASNVPTGLLNEMIAYLNSEERNH-HNFSELLLFSCLSIFAACKGFITLLTN 130 +P +L+ S R + + + +L + L A + + + Sbjct: 118 IPTFHVRDAQMEAIAMMLHTEFQQDTSGNRLYLDSLANILAVNLLRHHATKRPQLPIYEG 177 Query: 131 GVLSV-SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDARMQ 188 G+ +V + ++ KL D+ L +S + K + Q L+ R++ Sbjct: 178 GLPPRQLQQVLDYIDAHLDCEIKLADLAQILDMSPFHFSRLFKLSTGKSPHQYLIQQRIE 237 Query: 189 HAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 HAK L+ + + + IA +CG+ S S+ FR+ G +PK Sbjct: 238 HAKQLLKQTDRRIIDIAYECGFNSHSHLSKQFRQMMGVTPKVYR 281 >UniRef50_C6IVE8 AraC family transcriptional regulator n=2 Tax=Bacillales RepID=C6IVE8_9BACL Length = 289 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 28/230 (12%), Positives = 66/230 (28%), Gaps = 8/230 (3%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTN 66 ++Y+ G+ ++ +E H+ + + + + L Sbjct: 51 FEGKGTYTWGGQEYSCRTGDTFVIFPEGLFTYEADSLDPWHYAWVALRGSGVLRQLADVG 110 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 I V + L + + + A + + Sbjct: 111 ITPDKPVVSSGEPEELRELYARLRSSFRQSDHPHLESLEAAGWVTLLLHHFGVANREHLP 170 Query: 127 LLTNGVLSVSGK----VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQI 181 ++ + ++ ++++ L + L K + Q Sbjct: 171 RSAAKEPAMIDRQVEQAIRWFQLQYPQQIGIEELARNLGYHRAHLFSAFKARTGLSPKQY 230 Query: 182 LLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 L R++ AK L+ ++++IA G+ YF F+K G SP Sbjct: 231 LTKVRIEKAKELLAGPLTIDQIASSVGFNDALYFSRQFKKSTGKSPSEYR 280 >UniRef50_A9WH32 Sensor protein n=2 Tax=Chloroflexus RepID=A9WH32_CHLAA Length = 1202 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 115 LSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE 174 L+ A L++ + K ++ HP +DI + +SE L +QE Sbjct: 1076 LAHLQAALERRRRLSDQAQMLVRKAMAYIHSHYTHPLTRQDIAHYVGMSEDYLTHCFRQE 1135 Query: 175 -QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 TT + L R+ A++L+ + S+ IA + G++S+SYF FRK G SP+ + Sbjct: 1136 LGTTPVEYLNRYRVLQARHLLAESDKSITNIALEVGFSSSSYFSRVFRKEVGQSPEEYRR 1195 >UniRef50_O33813 Lactose operon transcription activator n=4 Tax=Staphylococcus RepID=LACR_STAXY Length = 279 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 79/229 (34%), Gaps = 6/229 (2%) Query: 8 IFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEP---YERHFKEIGFTENTIKKYLQC 64 I + + Y + G+I +++ + ++P + +G I YL Sbjct: 43 IVTQGEGTFSYAGETYHLTAGDIFLLERGMEVEYKPSFSNPWTYYWVGMNGKQILNYLSR 102 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 +I V + N+ L+ ++ + S N + L ++ Sbjct: 103 CSIVDSHVILGQDTTDIKNII-QLICKLSQSIESNNSNDILIMQYLYQLVYTLQEKFPKI 161 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 ++ + V + +N ++D+ + I+ S L K K+ + + L Sbjct: 162 FSVQVDIVNEDIQHAVDFINTNYQKHITVEDVAKSVNITRSHLYKLFKKNLGCSPKEYLT 221 Query: 184 DARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 RM HA L+ ++ I+ Q GY F F KHF S Sbjct: 222 YIRMYHASQLLIHTSTLISDISRQVGYKDPLLFSKNFTKHFEISASEYR 270 >UniRef50_C7NB33 Transcriptional regulator, AraC family n=1 Tax=Leptotrichia buccalis C-1013-b RepID=C7NB33_LEPBD Length = 283 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 8/235 (3%) Query: 15 NANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTNIQTVT 71 K + GE ++ +E + IGF N + +YL+ T++ Sbjct: 50 TFYSRGKTFHLKAGEFFFIEPEEIIWYEADEYEPWAYYWIGFRGNMVSEYLRRTSVNKNK 109 Query: 72 VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNG 131 A+ + ++ + E+ ++ ++ L L + C + Sbjct: 110 PIFSAQ--KGGDIIRDKIVEIFE-ISVISEDNDLLLNARLLEILYYLSECFPLTYAKKDS 166 Query: 132 VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHA 190 ++ K I+ + +I LYI + L + K++ + L + R+ A Sbjct: 167 KNTILAKALQIMRNNFDTSVHISEIAKALYIDRTYLHRIFKEKMKIAPKDYLTNLRIAKA 226 Query: 191 KNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNT 244 K L+ + + VN IA+ G F F+ SP K Y+ Sbjct: 227 KELLTQTDYPVNIIAQSVGIEDAQNFSKLFKNKENISPINYRKSYKNSFENQNKK 281 >UniRef50_C0BFD5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0BFD5_9FIRM Length = 305 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 88/245 (35%), Gaps = 10/245 (4%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTN 66 + + + Y +G+ +++ T ++ + +GF +++++ Sbjct: 47 MKGKGIYQVGETKYPLKEGQAFLIEPESLTFYQADKTDPWSYLWVGFGGTEAQRFVRDLG 106 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 + + + ++ EM+ + S N + + L+ S+ A Sbjct: 107 LNSRQL---TCECEYGEELKEIVFEMLHHTCSTAEN-LYYLQGKLYQFFSVLARGIEIQQ 162 Query: 127 LLTNGVLSV-SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLD 184 + S+ + + + ++DI + L ++ S L + + L + Sbjct: 163 YSNDTKESIHVQEAIAYIKNYYSQKITVEDIANYLALNRSYLYTIFMNSLGISPKEFLTE 222 Query: 185 ARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMN 243 R+ K + + SV +IA CGY ++ F F++ G +P + + R + + Sbjct: 223 FRISRGKEQLALTDLSVEEIAVSCGYRNSLAFGKVFKQKMGMTPTQYRNDNRKAARERLI 282 Query: 244 TGNTM 248 + Sbjct: 283 SAQNE 287 >UniRef50_B2GEN0 Transcriptional regulator n=1 Tax=Lactobacillus fermentum IFO 3956 RepID=B2GEN0_LACF3 Length = 278 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 91/236 (38%), Gaps = 9/236 (3%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCT 65 + + + + Y G+ ++ RT + + +GFT + ++ Sbjct: 46 ILSGSGIFKVDNVTYHLHAGQGFLIVPNCRTTYIADKETPWSYVWLGFTGKSAATWIDQI 105 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFI 125 NI + P S +NE++A N N+ I I Sbjct: 106 NISEIR---PVFNSNKSYELANCVNEILALDNLSMENNLRALSCFFRFLSYIATGTVINI 162 Query: 126 TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLD 184 + + ++ + ++ + + ++ S L K + T S+ + + Sbjct: 163 QQANSEKNHYVTQAIQYISHHLSK-VTVESLAHAVNLNRSYLTSLFKHDLDLTPSEYIQN 221 Query: 185 ARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 R+ A++L+ + S++++AEQCGY T+ F F++ +G SP++ +E + + Sbjct: 222 FRITKARHLLESSDISIDQVAEQCGYQRTNSFTRVFKRTYGISPRQYRQETKIAPN 277 >UniRef50_C6CXJ2 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXJ2_PAESJ Length = 289 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 33/236 (13%), Positives = 81/236 (34%), Gaps = 11/236 (4%) Query: 3 LVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHF----EPYERHFKEIGFTENTI 58 V ++ + G +V + + E + + + Sbjct: 44 HVIFQYTLNGLGYIEYEQQCIPLPRGTGFLVKVPSKHRYFYKSEDEPWEVLWLNLSGDEA 103 Query: 59 KKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 + Q + ++ +++ + E+ ++ + Sbjct: 104 SRIWDLVIAQEGPIIRRDP----NSPIIHAFRKLLRSIAEEKITDKYQLSAKVYEWMIAL 159 Query: 119 AACKGFIT-LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQT 176 ++ ++ S+ + ++ + A P L + + +++ L + ++ +QT Sbjct: 160 VQTSREVSREISTSSSSLIQRAKDFMKQHYAQPLTLDQLAEHCGVNKYHLCRLFQKSDQT 219 Query: 177 TFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 + L D RM+ A L+R E V I E CG+ ++SYF FR++ +PK Sbjct: 220 SPLAYLRDRRMEAAVALLRTTELPVQTIGEMCGFENSSYFGKVFREYMSMTPKEYR 275 >UniRef50_C6CXU8 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXU8_PAESJ Length = 529 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 7/190 (3%) Query: 52 GFTENTIKKYLQCT--NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSEL 109 T + +YL+ N + + + + + +LNE ++ H SE Sbjct: 334 ELTLSVFDQYLEQLFQNARYDLRVIKYELEKLFDFIVQMLNESGFSMHHVGDLEHLHSEQ 393 Query: 110 LL--FSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLL 167 L+ F+ I K ++ + A L+ + D + ++ Sbjct: 394 LIREFAKYQIVLLINQVTNWYNLDSRGNMEKAKSYITDHYADDLSLEVVADYVQLNPHYF 453 Query: 168 KKKLKQE-QTTFSQILLDARMQHAKNLIRVE--GSVNKIAEQCGYASTSYFIYAFRKHFG 224 K + TF L R+ AK L+ + S+ +I+ + GY +YF F+K G Sbjct: 454 SKLFHERCGITFVDYLTQVRISKAKELLAADFEQSLKEISMRVGYRDPNYFSRVFKKLTG 513 Query: 225 NSPKRVSKEY 234 SP + + Sbjct: 514 LSPSEFRQTH 523 >UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRN2_ALIAD Length = 274 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 82/238 (34%), Gaps = 17/238 (7%) Query: 11 HHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNI--- 67 + F + + G ++V F E + I E T++ Sbjct: 37 CYLFRLQLDGHAVVTTSGASMVVSAGDLLLFPAGEPYELRIEPDEGDRPGEHLSTDLYLF 96 Query: 68 ----------QTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSI 117 + N L ++I + + LL + Sbjct: 97 CNGPWVDKWWNHRPRKRHLRLALHENCVY-LWRQLIEEYRRPGKPDEELCDYLLRALCLT 155 Query: 118 FAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQT 176 F G+ V + ++R + A L DI D + +S S + K+ Sbjct: 156 F-DKYGYDPKRATPVPIAAERIRAYIERHAAEDLSLSDIADAVGLSVSRVVHIFKEAYGQ 214 Query: 177 TFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 T Q L + R+Q A + +R ++ +IA++CG+ S SYF FR+ +G SP+ + Sbjct: 215 TVVQYLQNVRLQMACDRMRFSNLNLEEIADRCGFHSYSYFYRVFRQKYGISPREFRQR 272 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 91/238 (38%), Gaps = 11/238 (4%) Query: 3 LVCSVIFIHHA-FNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKY 61 L+ S++ + + F L++ R F + + + Sbjct: 25 LLPSIVAVEQGEKQFQWHGRWIRFHKKNWLLIPAHSRITFVNNPHQTQFRSTQISFLIPP 84 Query: 62 ------LQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCL 115 L N TV+ + + + L +++ + + L+ Sbjct: 85 TAEMIQLSQQNADTVSNHLDSPEFIVDDEGRYLWQLLLSM---PKELSQAIQQQLVNGLY 141 Query: 116 SIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ 175 A L +S + K+ + P+ + ++ +C +S++ L ++L E Sbjct: 142 QYLAEKGQLHLLYAPQEISWTEKLTQFFSQDPSQNYTIEQVCQQFGLSKATLMRRLNDES 201 Query: 176 TTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 T F ++L RM HA +L++ +V ++A+QCGY S F F+K FG SPK+ K Sbjct: 202 TQFREVLAQVRMGHALSLLQEKSQTVLELAQQCGYQSEVRFTQRFQKQFGLSPKQYQK 259 >UniRef50_Q2BQ54 Transcriptional regulator, AraC family protein n=2 Tax=Oceanospirillaceae RepID=Q2BQ54_9GAMM Length = 304 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 75/227 (33%), Gaps = 6/227 (2%) Query: 12 HAFNANILDKDYAFSDGEILMVDNAVRTHFE---PYERHFKEIGFTENTIKKYLQCTNIQ 68 A I + G+IL++ V ++ + F + + + Q + Sbjct: 67 GEGEAVIDGQKTRIRSGDILLIPKGVSHTYQARKRKPWTIYWVHFHGHHAEDFAQHLQQR 126 Query: 69 TVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSEL-LLFSCLSIFAACKGFITL 127 + + ++ S + L LS A + Sbjct: 127 ESNQRRYVMPIGIHSRLASDFEALLEARESTYNLNAYICAANQLRQILSHIALLQPLAKQ 186 Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDAR 186 + +V +++ L + + + +S+ KK K+ TT + + Sbjct: 187 KQSRGGLDIERVHSLMQTHIHEQLDLDTLAESISLSKYHFVKKYKEVTGTTPINHFIQLK 246 Query: 187 MQHAKNLIRVEGS-VNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 ++ A +L+ + +N++A GY YF F+K G SP + K Sbjct: 247 IERACHLLDTTNNGINEVAFAVGYEDAYYFSRIFKKLMGVSPSQYRK 293 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 89/244 (36%), Gaps = 20/244 (8%) Query: 12 HAFNANILDKDYAFSDGEILMVDNAVRTHFEPYER------HFKEIGFTENTIKKYLQCT 65 ++ GE++++ I + + ++ Sbjct: 42 GQKTLRWRGQELTIQAGEMVLLAAGQTFDVLNNPDAKLGFYQAGWIALEQRVVDEFADLF 101 Query: 66 NIQTVTVPV----PAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC 121 ++T + P L+A + + +L LF L+ A Sbjct: 102 GVETYVQELAKIQPLAPLKAHFDV-------VRQALENDEAPELVLKLKLFELLAWLKAE 154 Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQI 181 ++ + + ++ ++R ++ A W + I L++SE+ L++ L++ TTF ++ Sbjct: 155 --HLSFVPHEKHNLLRQIRKMIASNTAFEWTAETIARQLHLSETSLRRALQKSDTTFREV 212 Query: 182 LLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 L D RM A L++ + V +IA + GY S S F F++ FG P + + Sbjct: 213 LTDVRMSRALTLLQITKWQVARIANEVGYDSPSRFTVRFKQRFGFLPSDIRENLSQPVQN 272 Query: 241 GMNT 244 Sbjct: 273 EQQK 276 >UniRef50_A3DHI5 Transcriptional regulator, AraC family n=5 Tax=Clostridium RepID=A3DHI5_CLOTH Length = 302 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 21/258 (8%) Query: 3 LVCS-VIFIHHAFNAN-ILDKDYAFSDGEILMVDNAVRTHFEP-YERHFKEIGFTENTIK 59 C +++I I +I+++ F E + I + + Sbjct: 45 HECFEMVYIKRGKAVFEIAGYPAEIGPNDIIIIKPNQPHKFIVKSESGCEFIVLSFKFVN 104 Query: 60 KY-----------LQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSE 108 ++ T P + N LLN ++ + + + Sbjct: 105 RFDGQYSDVSLENFLDFVSGKETGPFITLKVSQKNDIIVLLNRILKERENPDIGSEFLNY 164 Query: 109 LLLFSCLSIFAAC-----KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYIS 163 LL+ + + + I + + + N +N LKDI +++S Sbjct: 165 LLVMELFVLISRALKMEWENSIKNKSPKIKELIQASVNYINNNYERDISLKDIARYVFLS 224 Query: 164 ESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRK 221 S + K+E + LL R++ AK L++ + ++ IA G+++ F F+K Sbjct: 225 TSYFTRAFKEEMGISPINYLLKIRVERAKELLKDTDNRISDIALSVGFSNQQRFNDIFKK 284 Query: 222 HFGNSPKRVSKEYRCQSH 239 + +P + K + + H Sbjct: 285 YVKLTPLQYRKNVQVKKH 302 >UniRef50_C6JEQ5 Transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JEQ5_9FIRM Length = 301 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 78/246 (31%), Gaps = 11/246 (4%) Query: 1 MSLVCSVI-FIHHAFNANI-LDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTE 55 M +I F+ + ++ + G++ ++ + E + IGF Sbjct: 43 MPRDEFIIHFVLDGTGFYSAGGQTWSLTPGQMFVIYPNEPVTYGADETNPWTYAWIGFRG 102 Query: 56 NTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCL 115 ++ + +PA + + + + + LLL Sbjct: 103 IRAHSMVKECGFSKNQLVLPAPDQKIILKHIDYMLNHKQLSKANDLRRQAYLILLLAELA 162 Query: 116 SIFA---ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 A + + DI D + IS + L + Sbjct: 163 GFHEKQSAQNKKNAKYAYSTSVYVELAIEYIKDMYQKGIGISDIADNIGISRAYLNSSFQ 222 Query: 173 QE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 +E + L+D +M A +L+ SV +IA GY F AF+K FG SPK Sbjct: 223 KELGMSAQTFLIDYKMHKAASLLVSTSLSVKEIANNVGYEDQLVFSKAFKKKFGMSPKNY 282 Query: 231 SKEYRC 236 K ++ Sbjct: 283 -KTHKE 287 >UniRef50_A3CL13 AraC-type DNA-binding domain-containing protein, putative n=1 Tax=Streptococcus sanguinis SK36 RepID=A3CL13_STRSV Length = 282 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 90/243 (37%), Gaps = 14/243 (5%) Query: 8 IFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQC 64 I + ++ ++ Y +G+ +V ++ + +G + +YLQ Sbjct: 46 IVLEGRGTYSVGNQRYDLQEGQGFVVPPGQSVFYQADREEPWSYVWMGLGGRLLPRYLQD 105 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 +Q+ L+ L+ E +AY S ++ L + + Sbjct: 106 LGLQSGQWSFELTSLQEFKA---LVFESLAYEGSGITAELALQRQ-VYRFLELLSQRLKQ 161 Query: 125 ITLLTNGV--LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQI 181 +L+T +V +++ ++++ L + S L + K E + Sbjct: 162 TSLITESRRVNPYVQQVLELLSSHLPESLSVQELAQKLALHPSYLSRLFKDEVGKGIKEY 221 Query: 182 LLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 D R+ A +L+ + SV +IA + G+A T F AF+K G SP K SH Sbjct: 222 SNDLRLNMAADLLTGSQLSVEEIANKTGFAGTQSFSKAFKKARGQSPLNFRK---ASSHL 278 Query: 241 GMN 243 G Sbjct: 279 GQE 281 >UniRef50_C9AKD6 AraC-type DNA-binding domain-containing protein n=3 Tax=Enterococcus faecium RepID=C9AKD6_ENTFC Length = 286 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 93/232 (40%), Gaps = 9/232 (3%) Query: 8 IFIHHAFNANILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKYLQC 64 I + +I D+ Y G+ ++ V T + E + +G + N ++ YL+ Sbjct: 48 ILLEGEGYYSINDQKYFLKKGQGFVIPPGVSTFYQADEKNPWSYVWLGLSGNLVEYYLKE 107 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 + + + L N GL+ E ++Y + + + + + + Sbjct: 108 IGVGKNHLTFKVENL---NSFKGLIFETLSYDQDNLVSELSRQKQVYKFLELLLNSASYL 164 Query: 125 IT-LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQIL 182 ++T + + I+ +KDI L I E+ L + K + + + + Sbjct: 165 NEGIITKKMNPFVRQTIEIIRENAYQKLSVKDIAVSLSIHENYLSRLFKNDMGISIKEYI 224 Query: 183 LDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + ++ A +L+ E S+ +I+++ G+++ F AF+K G SP K Sbjct: 225 SEIKISIANDLLSSTEYSIQQISDKIGFSTVQSFSKAFKKANGVSPGVYRKR 276 >UniRef50_UPI0001C35A6E helix-turn-helix domain-containing protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35A6E Length = 305 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 87/238 (36%), Gaps = 13/238 (5%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTH---FEPYERHFKEIGFTENTIKKY-- 61 ++F+ + I Y G++L++++ E F ++ Y Sbjct: 62 LLFLGGCTDCYIEHHRYRLKRGDLLIINSQEIHRAVASEGTPYERIATHFYPELVRNYCT 121 Query: 62 -----LQCTNIQTVT-VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCL 115 L C + + + ++ L + + + S H + L L Sbjct: 122 EQTDLLSCFEKRKNADRNLLSLTPKSLEHYLYLTDHLHTAVASASFGHDILASTYLLQLL 181 Query: 116 SIFAACKGFITLLTNGVLS-VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-Q 173 + C T L ++ +S ++ ++ ++ + D LY++ S + +K + Q Sbjct: 182 VLANTCFYESTWLPENLMPQLSSQIMRYIDEHLTEDLSIQALADHLYMNRSHMSRKFREQ 241 Query: 174 EQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 + + ++ R+ AK L++ SV E G+ S FI F+K+ SP Sbjct: 242 AGCSIQEYMILKRISLAKTLLKQGKSVTDTCELSGFHDYSNFIRTFKKYAQVSPGHYR 299 >UniRef50_D2THV7 AraC-family transcriptional regulator n=6 Tax=Enterobacteriaceae RepID=D2THV7_CITRO Length = 284 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 39/235 (16%), Positives = 87/235 (37%), Gaps = 10/235 (4%) Query: 8 IFIHHAFNANILDKDYAFSDGEILMVDNAVRTH-FEPYERHFKEIGFTENTIKKYLQCTN 66 I + + + + +GE+L + + F L + Sbjct: 53 IVLRGEYGNQLEKSQHRLVEGEMLFIPARAANLPISEKPVMLLSLVFAPAWFG--LSFYD 110 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 ++ ++ P + + + G M+ L R+ + ++ LS+ C+ + Sbjct: 111 TRSASLLRPLRRIELPHPQRGEGEAMLTALTHLSRSPQEQA-IIQPLVLSLLHLCRSVVN 169 Query: 127 LLTNGVLSVSG----KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQT-TFSQI 181 + + + N V A P + + I+ + L + + T +F Sbjct: 170 TPPDIRRPRAEFLYHSICNWVQDNYARPLSRESVATFFNITPNHLSRLFTRHGTMSFVDY 229 Query: 182 LLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 + RM A+ +++ SVN++A++CGY + YF FR+ FG +P ++ Sbjct: 230 VRWVRMAKARMILQKYHLSVNEVAQRCGYEDSDYFCRLFRRQFGLTPGEYRARFQ 284 >UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GN71_SORC5 Length = 329 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 93/265 (35%), Gaps = 21/265 (7%) Query: 7 VIFIHHAFNANILD----KDYAFSDGEILMVDNAVRTHF--EPYERHFKEIGFTENTIKK 60 V+ + A + +G+IL+V + EP FT + + Sbjct: 64 VLILDGAKRIFLDGPDGNTRLVAREGQILLVPQGIPLELVNEPDPERGAYRSFTIELLSE 123 Query: 61 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 + + T+ V LL + + + + + L Sbjct: 124 VDERLQRRYPTLCVQRGLGGFEADRPHLLRSAMPSIQALIHLVNTLLLPGAHALLIEHRL 183 Query: 121 CKGFITLLTNGVLSVSGK--------------VRNIVNMKPAHPWKLKDICDCLYISESL 166 +TLL + VR +V PA PW ++ L +S++ Sbjct: 184 EDLILTLLLQHREQLDEARAASSTLALDPTLAVRALVRRDPARPWAAPEVARALGVSDAT 243 Query: 167 LKKKLKQEQTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGN 225 L+++L + +F +L R+ AK L+R V ++A CGY S S F FR+ G Sbjct: 244 LRRRLGAKGVSFRALLWKERLDLAKGLLRSGRHGVLEVATACGYDSASRFAEQFRRSEGV 303 Query: 226 SPKRVSKEYRCQSHTGMNTGNTMNA 250 SP +R ++ + ++A Sbjct: 304 SPSEYRARHRASANGCWSEEPELDA 328 >UniRef50_A5I5L7 AraC-family transcriptional regulator n=10 Tax=Clostridium RepID=A5I5L7_CLOBH Length = 688 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 91/246 (36%), Gaps = 12/246 (4%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEP--YERHFKEIGFTENTIKKY--- 61 + + + I + + + EI +++ + + KY Sbjct: 35 IYVLEGSIKITIETESHRVNKQEIGIINPEEAHSIKSITNNNKVLIFQIDTSFFNKYYDI 94 Query: 62 ---LQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 T+ K+ + LL E+ ++ E LL+ ++ F Sbjct: 95 ENMFFYTDFSAPEAQKHEKYDVLRKYLSTLLCEIAQKGDNYEDVVEEILVDLLYHLINNF 154 Query: 119 AACKGFITLLTNGVLSVS--GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQ 175 L + ++ + + ++DI ++S L ++K + Sbjct: 155 HYLIYDEEELKENEVQFERYDRIIKYIYSNYNNKISIQDIARLEFLSSHYLSNEMKNKVG 214 Query: 176 TTFSQILLDARMQHA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 +F+ + R++ A K L+ + ++++I+E+ G++ T YF F+KH+ +P + K+Y Sbjct: 215 YSFNDFVNLTRVEEAIKLLLDTDKTISEISEELGFSHTRYFNKHFKKHYKCTPMQYRKKY 274 Query: 235 RCQSHT 240 + T Sbjct: 275 KVDEET 280 >UniRef50_UPI0001C3766F two-component response regulator n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3766F Length = 286 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 85/244 (34%), Gaps = 13/244 (5%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTN 66 +I +H+ F +Y S+ EI+++ + + I + + Sbjct: 42 IIPLHNGFTVVSGGVEYHLSEKEIIVIPPGELHSMPAQDGRRIIFQCDNSVISEVPSLES 101 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 I V + L + I + +E + +++ ++ L Sbjct: 102 ILPVFSSAVHITPSLNKELYVLARKNILDIYTEYYSKAPMADVRIYMYLITILTAIREFQ 161 Query: 127 LLTNGVLSVSGK-----------VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ 175 L + S S V +N + L+ + S+ + K+ Sbjct: 162 LNSADENSASAAENSDESRKFGLVTKYINQNYMYELPLEKLASIAGYSKYHFSRIFKKYN 221 Query: 176 -TTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 ++ Q + R++ A+ L+ + ++A QCG++S + F AFRK G +P K Sbjct: 222 NMSYIQYINSKRIKAAERLMADSSLPITEVAMQCGFSSLTTFNRAFRKAKGCTPTEFRKL 281 Query: 234 YRCQ 237 ++ Sbjct: 282 FKIN 285 >UniRef50_A9KSF8 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KSF8_CLOPH Length = 292 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 79/239 (33%), Gaps = 15/239 (6%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQ 68 + I D Y G++++ + V + + F + Sbjct: 43 ILSGTSKYRIDDIYYDVKAGDMIVCNPGVFHQNMLLDGEEPLVEFCTGFTDFQFKNMPEN 102 Query: 69 TVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHH------------NFSELLLFSCLS 116 T+ + + S+ + + + +E LL+ + Sbjct: 103 TIQLSNQGHIVHLSSEAKRETSRLCYDMLAENEAGQVGKYFMLKAQLIQMLMLLMREVIE 162 Query: 117 IFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-Q 175 + T ++ N + H L I +Y+S + K K+E Sbjct: 163 APKVTQKGCNFETYSKSYAVKRIINYLMENYEHKISLDQIAHNMYLSPVYISKIFKEETG 222 Query: 176 TTFSQILLDARMQHAKNLI--RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + L+ R++ AK ++ R GS+ IA + GY +F F+K+FG SP+ K Sbjct: 223 ESPINYLIKIRLEKAKEILSEREGGSIKNIANEIGYDDVYHFSKLFKKYFGISPQNYRK 281 >UniRef50_C0CH60 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CH60_9FIRM Length = 278 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 85/236 (36%), Gaps = 7/236 (2%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTN 66 + ++ + G+++++ + + + E +L Sbjct: 45 FYVVSGEGKFLFRNETHHIKTGDLVIIPPYLEHTEQSVKGKSLEYYVIGIDKISFLAENG 104 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 + R + + + +M+ + +++ + LL + + I Sbjct: 105 QTGIQAF---CNFRDQSSVSDIFAQMLYEMRNDDYGSEIICQNLLEILILRIIRSQRLIP 161 Query: 127 LLTNGVLSVSG--KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 + N +++ ++ L + ++++ + + + Q L Sbjct: 162 ISINSERMTKECAQIKEYLDTNYTERITLDTLTSLTHMNKYYMAHSFAKYAGLSPIQYLN 221 Query: 184 DARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 R++ A L+R + SV+ IA G++S SYF +FRK++G +P + ++ S Sbjct: 222 RRRLKIACTLLRDTDHSVSDIASSTGFSSQSYFTQSFRKYYGMTPLQYRQQNAETS 277 >UniRef50_UPI0001C35ADD AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35ADD Length = 304 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 79/235 (33%), Gaps = 16/235 (6%) Query: 13 AFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTV 72 + I K + G I ++++ E R + Sbjct: 47 EADFYINGKKKQVAAGSITLINSGDIHALE--PREVPVDTEDKIHGISLFISYEFLKKIC 104 Query: 73 PVPAKFLRASNVPTGLLNEMIAYLNSEERNH------------HNFSELLLFSCLSIFAA 120 P + L E+ NS R + L++ L+ F Sbjct: 105 PEIDQITFELEGQEERLKELKEVFNSLIRLELAPPEEYGYLKKNAMLHSLMYLLLTYFKE 164 Query: 121 CKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFS 179 + ++ + + V + V P L+ + D +S L + LK+ TF Sbjct: 165 PRNQSSVKSQKYIDRLRVVLDYVEENYREPLTLQGVADHFSVSMEYLARILKKYTGNTFK 224 Query: 180 QILLDARMQHA-KNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 L R+ A ++L+ + SV +IA + G++ T I FR +G +P + K+ Sbjct: 225 THLNQVRVSKAFRDLLETDYSVLEIAMRNGFSDTRSLINVFRDTYGMTPSQYRKK 279 >UniRef50_A7AA81 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AA81_9PORP Length = 287 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 81/227 (35%), Gaps = 15/227 (6%) Query: 16 ANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQ---TVTV 72 ++ ++ +FS+ E++++ + V FE + + + N + Sbjct: 60 LHLENESISFSENEMMVICSNVEHTFEAGSEDTTLMQLE--FLPEVFSRFNPDGHGQMKD 117 Query: 73 PVPAKFLRASNVPTGLLNEM--------IAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 P N ++N + I +++ ++ + ++ ++ L I Sbjct: 118 LAPVTIFSEENRLIKIVNNVRIMRAVQRIVNEMNQKSKYYQYLVVMYYAELLILIYRYLD 177 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 L K + + + + D+ + E L+K Q + L Sbjct: 178 EAYLPICTNDSLKKAISYIRLNYQSDITISDVASQTGVGERYLRKLFSQYLNLSPLDYLN 237 Query: 184 DARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 R+ A L+R E SV ++ CG+ S YF F++ G SP+ Sbjct: 238 QIRINKAIELLRNTEMSVKEVCFACGFQSPQYFSRIFKQQMGISPRE 284 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 92/196 (46%), Gaps = 7/196 (3%) Query: 51 IGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEE------RNHH 104 I+K Q N + + V + + S + ++ + L + R++ Sbjct: 43 FRLAACFIEKLNQQLNFRELCDGVFSGNVAVSFTLRPGIVDIYSALKAMVEKGCGNRSND 102 Query: 105 NFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISE 164 ++ + + T S+S ++R +++ PW LK+I +Y+SE Sbjct: 103 ELLDINSMLLYLLMHFEQSASQAETRSYSSLSSRIRALISKDLTKPWTLKEIAKLVYMSE 162 Query: 165 SLLKKKLKQEQTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHF 223 S +K+KL +E TTF+ +L AR+ A+ ++ + SV+ IAE CG+ SYF FRK + Sbjct: 163 STVKRKLNKEGTTFTDVLQAARLDTAQKMVCNSDASVSAIAELCGFKHASYFGACFRKEY 222 Query: 224 GNSPKRVSKEYRCQSH 239 G +P K+ + +++ Sbjct: 223 GATPLAYRKQAQLRAN 238 >UniRef50_B0K234 Response regulator receiver protein n=8 Tax=Thermoanaerobacteraceae RepID=B0K234_THEPX Length = 537 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 75/217 (34%), Gaps = 13/217 (5%) Query: 18 ILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTN-IQTVTVPVPA 76 I + ++ ++ F + ++ + F +Y + + I+ + + Sbjct: 318 INKERLFIDR----LMTGDLQGSFTIFNEIYEWMVF------EYQEDIDKIKAKLIEIIG 367 Query: 77 KFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVS 136 R + N + E ++ ++ ++ + T+ + + Sbjct: 368 VIKRNLSYYAEDENFIENRELEEILKINDVDKIKFIFINTLKNLFENIKTINKEKMDTFI 427 Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDARMQHAKNLIR 195 K+ + L D+ + +S K K Q F L + R+ AK L+ Sbjct: 428 AKIIRFIEDNFNKDITLDDVAKEVNMSYHYFSKFFKDQTGKNFIDYLTNLRVTKAKELLE 487 Query: 196 VEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 E S+ ++ + GY+ +YF F+K G +P Sbjct: 488 DETVSIKEVCYKVGYSDPNYFSKIFKKATGMTPTEYR 524 >UniRef50_C6D5P5 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5P5_PAESJ Length = 276 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 85/236 (36%), Gaps = 12/236 (5%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRT-----HFEPYERHFKEIGFTENTIKKYLQ 63 + I D+ +G+I+++ + +ER I Y+ Sbjct: 39 LMSGKREFFIKDRTLVIHEGDIVIISPNILHRTTNTETPEHERLIVNIHEKHMAAGSYVD 98 Query: 64 CTN-IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK 122 + + + L+ +L MIA ++ ++ ++ L L I Sbjct: 99 VLHPLSEREYLIVKCTLQDRLAIETMLQTMIAEMSEKKPGFELYALTLALQLLLICCRHA 158 Query: 123 GFITL----LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTT 177 ++ + + +V +N + L + + Y+S L + K+ T Sbjct: 159 KSSSMETLESPSPMHERISEVVRYMNSHYMNELSLHLLAEKFYVSPYYLSRFFKEATGFT 218 Query: 178 FSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 F + L R++ AK L+ + VN IA++ G+ S ++F F+ G P K Sbjct: 219 FVEYLNSVRIKEAKKLLEQSSMKVNLIAKRVGFGSVTHFGRVFKSVTGYVPLHYRK 274 >UniRef50_C6JJY6 Transcription regulator n=1 Tax=Fusobacterium varium ATCC 27725 RepID=C6JJY6_FUSVA Length = 288 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 13/242 (5%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEP--YERHFKEIGFTENTIKKYLQ 63 + + FN I Y G+IL +++ P + + L Sbjct: 43 IIRILSGTFNIKIDAVSYTVKTGDILFLNSGAIHSGIPVDCTYECLVFDISSLLQQNSLV 102 Query: 64 CTNIQ---TVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 T + + F + +LN+M + ++ + L+ L + Sbjct: 103 NTELNALIHYKKKIQLLFDKKLGAVYDILNQMFEIMKDKKNGYQLRIYGNLYYFLGLVEE 162 Query: 121 CKGFI-----TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-E 174 +I + + LS KV + K L+D+ + ++E K K+ Sbjct: 163 KNLYIKEKEFSAINKKSLSRIKKVLFFIETKYMENISLEDMAKTIKMNEKYFCKFFKEIT 222 Query: 175 QTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKH-FGNSPKRVSK 232 + T + L R++ A I+ + S+ +A CG+ TSYF F+K+ G +P+ SK Sbjct: 223 KKTPMEYLNHYRIECACEKIKFFDSSITDVAYDCGFNDTSYFTKVFKKYNSGMTPREYSK 282 Query: 233 EY 234 Y Sbjct: 283 LY 284 >UniRef50_A9KLS8 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KLS8_CLOPH Length = 277 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 83/240 (34%), Gaps = 15/240 (6%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE---IGFTENTIKKYLQCT 65 + + D Y S GE+++++ E I F+++ ++ Q Sbjct: 34 LLSGTRRFFVNDTLYNVSKGELILIEEGALHRTTYISGGSHERICITFSKSFLQPLFQEF 93 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEER----------NHHNFSELLLFSCL 115 + V ++R ++I+ + E + H + +L L Sbjct: 94 GEEAVLKCFSQPYVRIPQSRREYFEDLISKAHREMMYQDTYSLYLASSHVYELILFILRL 153 Query: 116 SIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-E 174 + + + + K + P L++ +S + KK K Sbjct: 154 NSISKQDDITPYDASPDDQIMEKAAKYICSNYQSPVTLEETAAYCNMSTTYFSKKFKAVT 213 Query: 175 QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 F + L+ R++ A L+ + + +IA G+ ++YF F++ G SP + K Sbjct: 214 GFGFKEYLISIRIREASRLLLHTKLPITEIALLSGFNDSNYFGDVFKRMKGISPCKYRKN 273 >UniRef50_A8SQD4 Putative uncharacterized protein n=2 Tax=Coprococcus RepID=A8SQD4_9FIRM Length = 300 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 82/240 (34%), Gaps = 14/240 (5%) Query: 6 SVIFI-HHAFNANILDKDYAFSDGEILMVDNAVRTHF--EPYERHFKEIGFTENTIKKYL 62 +I++ I + + DG + + V + F I Sbjct: 41 EIIYVRKGPLTVEIDGQKFTGEDGSVFIASPGVLHMMSAPDTPVDYFTFIFPLEFISFQT 100 Query: 63 QCTNIQTVTVPV--PAKFLRASNVPTGLLNEMIAYLNSEER-------NHHNFSELLLFS 113 + V P+ + R LL ++I L+ + + L Sbjct: 101 KDALEDEVFFPLRNHTRGFRPEVADRKLLGKLIPILDELVEENGKMGTHRQIQVRIRLLQ 160 Query: 114 CLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 + + L N + ++ + L ++ + ++SE + + + Sbjct: 161 MMDLLVEYSQLEELTRNASGELEKEILLYIQDNYHDNIGLAELSEHFHLSEKYMSRLFSE 220 Query: 174 -EQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 T +Q + R+++A++L+ + SV +IA + GY + SYFI F G SP R Sbjct: 221 RFHMTLTQYVNYVRLRYARHLLESTDLSVTEIAMKSGYQNVSYFIRRFSSAMGESPLRYR 280 >UniRef50_A8GGG4 Transcriptional regulator, AraC family n=2 Tax=Serratia RepID=A8GGG4_SERP5 Length = 282 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 75/231 (32%), Gaps = 8/231 (3%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTN 66 I + + GE ++ T + H+ + K + Sbjct: 45 ISGTGVLHSEYGAFPVVAGEGFLIHPHDVTTYRADKKDPWHYMWLEVDGLVAGKIFEECR 104 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 + + P R ++ L+ + ++ ++ + L ++ Sbjct: 105 L---SRQFPIYRPRKTDETPQALSYLRQLVSHDDEHRLKTLGLSYLFFSALIDNALQGSD 161 Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDA 185 + K ++ + ++ + I+ S L + K + LL+ Sbjct: 162 EHPSDKTQHLHKAVKLIENRYHEHLTIERLAAYCNINRSYLCRLFKGAYGIGPKEYLLNF 221 Query: 186 RMQHAKNLIRVEGS-VNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 RM A +L+R + + + GY + +F AF++ G SP + +E + Sbjct: 222 RMTLATSLLRNSRTAIKVVGISVGYENQLHFSKAFKQVHGVSPAQWRQENQ 272 >UniRef50_C7GFI0 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C7GFI0_9FIRM Length = 291 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 88/246 (35%), Gaps = 11/246 (4%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTH---FEPYERHFKEIGFTENTIKKYLQ 63 I I + + ++++++ + + G + Y Sbjct: 45 FYVISGKGVFYIENDTVSVCADDLIIINPHIEHTEKTMSNDPMTYIVFGVEG--LAFYFN 102 Query: 64 CTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKG 123 N + A MI N+ + LL L ++ + Sbjct: 103 SQNAANPKGYSYYNYGSAKTHFINFSQIMIKEFNARKPGFEAICHGLL-QVLLVYITREQ 161 Query: 124 FITLLTNGVLSVSGK---VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFS 179 ++++++ L +S + + ++ A L + + +I++ L + T+ Sbjct: 162 HLSVISDTTLQISKECFVAKKYIDANYAKNITLDLLAEITHINKFYLSHSFTEYVGTSPI 221 Query: 180 QILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 L++ R+ +K L+ S+ ++A G++S SYF FRK+ G SP + K + S Sbjct: 222 NYLMETRLAASKELLLSSSRSIAEVASSTGFSSQSYFSQIFRKNTGMSPLQYRKLKQTDS 281 Query: 239 HTGMNT 244 T + Sbjct: 282 KTMQDD 287 >UniRef50_Q7UYE3 L-rhamnose operon transcriptional activator n=1 Tax=Rhodopirellula baltica RepID=Q7UYE3_RHOBA Length = 290 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 80/252 (31%), Gaps = 24/252 (9%) Query: 6 SVIFIHHAFNANI-LDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGF----------- 53 ++ I +I + Y G+ ++ + ++ Sbjct: 41 EIVIITGGKGVHITGEDSYELVTGDTFVIGGDRPHDYLNMDQLSLINILFDPLELPLSIG 100 Query: 54 TENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFS 113 ++ Y ++ R P L+ + + ++ + + Sbjct: 101 DLQSLSGYHALFTLEPAWRKRHQFTSRLQLNPAELIETLRYVESLDQELKQRSAGFRTMA 160 Query: 114 CLSIFAACKGFITLLTNGVLSVSGKVRNI------VNMKPAHPWKLKDICDCLYISESLL 167 L++ S K+ I + P L D+ + +S Sbjct: 161 TLTMLQLVTFLSRCYIRTRNPESKKLLRIAEAISHIQRHFDRPISLDDLVEISGMSRRNF 220 Query: 168 KKKLKQEQT---TFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHF 223 + E T + + L+ R+Q A L+R + S+ IA G++ ++YF FR H Sbjct: 221 IRTF--EGTMETSPIKYLIQVRIQEASRLLRSTDRSITDIAFDVGFSDSNYFSRQFRTHL 278 Query: 224 GNSPKRVSKEYR 235 G SP+ K+ R Sbjct: 279 GLSPREYRKQMR 290 >UniRef50_C4IHE3 Msm operon regulatory protein n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IHE3_CLOBU Length = 285 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 8/231 (3%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCT 65 I + + K Y + ++ T++E +K +GF + YLQC Sbjct: 49 IIEGSGTFLVNGKLYKLHKNQGFIIFPDDITYYEADNHTPWIYKWVGFKGIKAEYYLQCA 108 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFI 125 + T P + MI + + LL + Sbjct: 109 GL---TKENPIFEYSNDKFLEECFDNMIKASKLKYASELKLQGLLSIFLSELIELSSIDS 165 Query: 126 TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLD 184 + K N + M + + +I L ++ K+ T Q ++ Sbjct: 166 SSDYYYKDVYIKKCLNYIEMNYSRKLLISEIAALLGLNTKYFSLIFKESIGVTPQQYIIS 225 Query: 185 ARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 R+ A L++ + S+ I+ GY + F F+K G SPK+ +++ Sbjct: 226 FRVNKACELMKNFKLSICDISRSVGYDDSLAFSKIFKKQKGMSPKKYREQF 276 >UniRef50_C9KND9 Transcriptional regulator, AraC family n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KND9_9FIRM Length = 298 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 89/243 (36%), Gaps = 8/243 (3%) Query: 15 NANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTNIQTVT 71 Y G+ +++ +T +E + + F + + + + Sbjct: 52 TFQANQHTYCLHAGQGFLIEPDYQTTYESDAKEPWTYIWVAFNGSRAAEIIASLRLS-QA 110 Query: 72 VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNG 131 P+ + +M+A+ NS + + LL LS+ A + + L Sbjct: 111 DPIYTCTKEQGAKLAAYVQDMLAH-NSFTLSGRYYRLGLLMQFLSVLAEAQRDL-LPPAD 168 Query: 132 VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHA 190 + + N + P+ ++++ D + ++ S + K+ + + + + R+ A Sbjct: 169 NNAYISHMTNFIRTHLEEPFTVQELADYMNLNRSYVTTLFKRYLHCSPHEYIQNCRLTKA 228 Query: 191 KNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMN 249 ++L+ SV IA CGYA + F AF + G +P ++ + ++ Sbjct: 229 RHLLETTTFSVESIAYSCGYAKSDSFQRAFLRKAGMTPTAYRRQQQSSYLQATEPPSSAE 288 Query: 250 ALA 252 A Sbjct: 289 ATG 291 >UniRef50_C6D5X4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5X4_PAESJ Length = 533 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 20/205 (9%) Query: 34 DNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMI 93 + VRT +E H ++ + ++ ++ + + + + A + + L++ I Sbjct: 341 SDKVRTLAGKWETHIRKEQYASEEVRDWVLKL-LIDMRLKLHAMLFASQTLTAEKLHKEI 399 Query: 94 AYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGK-----VRNIVNMKPA 148 Y +S L+ F L VS + R V+M Sbjct: 400 VYFDS------------LWGLFEWFHTQLQSYIAAREEALPVSKRREVSEARKYVSMNLG 447 Query: 149 HPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQ 206 L+++ L+++ S + K+E TF + + D +++ AK L+ + V++I E Sbjct: 448 KRISLEEVAAHLHMNPSYFSRFFKKETGLTFIEYVTDQKIERAKELLDQTNYYVSEICEM 507 Query: 207 CGYASTSYFIYAFRKHFGNSPKRVS 231 GY + SYFI F+ G +P Sbjct: 508 LGYDNQSYFIKTFKAQTGLTPTEYR 532 >UniRef50_C6D3L6 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3L6_PAESJ Length = 305 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 88/264 (33%), Gaps = 26/264 (9%) Query: 6 SVIFIHHAFNAN-ILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIG------------ 52 ++FI + + + G++ +++ + + + E+ Sbjct: 40 ELVFIKQGSGLHEYEGNTFPITAGDVFIIEPGMDHAYTVEQSEGMEVVNVLFVPALLERE 99 Query: 53 ----------FTENTIKKYL-QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEER 101 ++ +L + Q P + + + L+ E + + Sbjct: 100 LAVLSGVTSFIDFYYMEPFLRSDVSFQAKLTLSPRQMMDIRGILEQLMKEYGNKESGYQF 159 Query: 102 NHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLY 161 + L I+A + + ++ + AHP L+ I Sbjct: 160 LIKSKLIELFIILSRIYANNRNHSLPSIQNDGEMIARICEFIKRHQAHPLSLEQISQMAG 219 Query: 162 ISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAF 219 +S+S +Q +F + D R+Q AK L+ + +IA GY S+F + F Sbjct: 220 MSQSKFTLLFRQMTGMSFVEFRNDQRIQLAKQLLAASSDKIARIALDTGYEDLSHFNHVF 279 Query: 220 RKHFGNSPKRVSKEYRCQSHTGMN 243 +K G +P K + +S +G Sbjct: 280 KKLTGETPSLYRKRMKGRSESGEP 303 >UniRef50_D2MNX8 Transcriptional regulator, AraC family n=1 Tax=Bulleidia extructa W1219 RepID=D2MNX8_9FIRM Length = 282 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 89/245 (36%), Gaps = 17/245 (6%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHF-----EPYERHFKEIGFTE----- 55 + + + ++ K + G++ +++ + E + Sbjct: 32 FIEILEGEYQCHVSGKTFLAHPGDLCIINRSRIHRILNQKKERCRKKVLIFDPDYFIHNP 91 Query: 56 NTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSEL-----L 110 +KY++ +T + KF L + I LNSE+ + + L Sbjct: 92 EIYQKYVKPLQEETAFSHMQLKFKSGMGAELIHLIDEIDRLNSEKPVGYEMETIGLIYLL 151 Query: 111 LFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKK 170 L + + + ++ K+ + A L+ I +S+S + Sbjct: 152 LRRLYLAHHQQEKLLQENYDLNSTIQRKMTLYIYEHYAEHLTLEKIAQAGLVSKSTCIRL 211 Query: 171 LKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 K+ + L R++ + L++ S+ IA +CG++ SYF F+K +G+SP Sbjct: 212 FKEYTGKSPIDFLNRYRLEVSSQLLKNSHRSITDIAFECGFSQASYFNRQFKKEYGSSPN 271 Query: 229 RVSKE 233 + ++ Sbjct: 272 QYRQQ 276 >UniRef50_C7G755 Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G755_9FIRM Length = 302 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 15/241 (6%) Query: 6 SVIFIHHAF-NANILDKDYAFSDGEILMVDNAVRTHFEPYER--HFKEIGFTENTIKKYL 62 +I++ +I + Y G+ +V + F I Sbjct: 54 EIIYVKSGLLTVSISGESYIGKAGDAFVVSPGNLHLMGSQTGTVDYFTFLFPLKYISFRT 113 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSE----------LLLF 112 + P+ + L + E+ L ++ +E ++L Sbjct: 114 DDMLDDKLLEPLNSGHLMINPRVKDSAKELCEQLIDIYMAENDETESKITAQIKTKIILL 173 Query: 113 SCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 + I T+G V ++ + + LK+ + ++SE + + K Sbjct: 174 QFILEMWKKGFVIENDTSGRNIVEKEMVSYIQQNFTGKISLKEFGEQFHLSEKYISRYFK 233 Query: 173 QE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 + T SQ + R+++AK L++ + SV + A Q GY + SYFI +F+K +G SP + Sbjct: 234 EHFHITLSQYITYLRLENAKQLLQDTDLSVTETAMQSGYQNVSYFIRSFKKAYGISPLKY 293 Query: 231 S 231 Sbjct: 294 R 294 >UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVY3_9CLOT Length = 529 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 58/150 (38%), Gaps = 11/150 (7%) Query: 84 VPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIV 143 LL+ ++A EE F ++ + + + + ++ + Sbjct: 382 RDQELLSALLA-AGEEETARQKFVAAMV--------ELAQAVVIKNQEPDGIITRAQDYI 432 Query: 144 NMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRV-EGSVN 201 L+++ + IS K K+E F++ L R++ AK L+ E S+ Sbjct: 433 RQNFRKDISLEEVARTVGISPYYFSKLFKEEAGMNFTEYLTGIRIETAKRLLSERELSIK 492 Query: 202 KIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 ++ GYA+ +YF F+K G +P Sbjct: 493 QVCVDSGYANPNYFSRIFKKWVGITPTEFR 522 >UniRef50_C6LA91 Putative transcriptional regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LA91_9FIRM Length = 288 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 84/239 (35%), Gaps = 18/239 (7%) Query: 11 HHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY-ERHFKEIGFTENTIKKYLQCTNIQT 69 H N + + + GE +++ + I F + + L + Sbjct: 47 HGVLNLTVRGRSFTLHPGEFCFINSGELHEIKSGGPSLHHAIVFNPDILDFTLYDICQHS 106 Query: 70 VTVPVPAKFLRASNVPT----GLLNEMIAYLNSEERNHHNF-------SELLLFSCLSIF 118 PV + L +P+ ++ ++ R +H ++ + L +F Sbjct: 107 FIRPVTSGNLIFPTLPSVFSPEESQMILFHMQEIIRLYHTLPSCASLSIKIHILQILELF 166 Query: 119 AAC----KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE 174 + I+ + KV ++ A P L D+ ++S + KQE Sbjct: 167 FQADCFLENTISSKEKDSQNKLKKVIEYIHENYAGPISLPDLAKICFMSPNYFCHYFKQE 226 Query: 175 -QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 + + R+Q A ++ E V+++A G+ + SYFI FR++ +P Sbjct: 227 IGKPPIAFINEYRIQKACQILTDSELPVSQVAISVGFDNFSYFIRKFREYKNVTPTEYR 285 >UniRef50_Q2BDI9 Two-component response regulator n=2 Tax=Firmicutes RepID=Q2BDI9_9BACI Length = 525 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 2/137 (1%) Query: 99 EERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICD 158 E ++H+ + L + + + + K + + A L+ + Sbjct: 388 ELSDYHDSAVLFEQGKNHLLRIVRHVQAWRNSHAKDMLYKAKEYIEAHYAEALTLESAAE 447 Query: 159 CLYISESLLKKKLK-QEQTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFI 216 + +S K K + TF + D R++ AK+ ++ S+ +I GY +YF Sbjct: 448 YVDLSPFYFSKLFKDRFGMTFIDFVTDVRIRKAKHFLKEGSLSLKEICYSIGYKDPNYFS 507 Query: 217 YAFRKHFGNSPKRVSKE 233 F+KH G SP KE Sbjct: 508 RVFKKHTGLSPTEYRKE 524 >UniRef50_Q9K690 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9K690_BACHD Length = 530 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 9/232 (3%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCT- 65 +I+ H + DK+ E L ++ + ++ Y+Q Sbjct: 287 IIYDHKQASYYFYDKNVKIRADEQLPIERENKLIEAIKSGDGEK---ALQAFDHYVQAIL 343 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCL---SIFAACK 122 + K+L+ + G L + ++ FS + + I + Sbjct: 344 RCSKHPLHDMRKYLQQLFIILGRLLNEMGLHWETAQDFARFSTVHQVTEHGKSEILHIVR 403 Query: 123 GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQI 181 T S+ R+ V+ P L D+ + +S + K K+ TFS+ Sbjct: 404 TLQEWRTTDEQSLMLLARDYVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERFDLTFSEY 463 Query: 182 LLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + R++HAK L+ + S+ +I + GY +YF F+K G SP K Sbjct: 464 VTQLRVEHAKQLLSLTQKSLKEITYEIGYKDPNYFSRVFKKLTGKSPSDYRK 515 >UniRef50_D0I5P8 Transcriptional regulator AraC family n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I5P8_VIBHO Length = 293 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 36/245 (14%), Positives = 83/245 (33%), Gaps = 17/245 (6%) Query: 2 SLVCSVIFIHHAFNANILDKDYAFSDGEILM------VDNAVRTHFEPYERHFKEIGFTE 55 +C V+ + Y +S L+ V+ ++ + + + + Sbjct: 44 PSICFVLQAKK--RVATGQQAYVYSADSYLINSVTRPVEASLLDVTDSHPYVGFSLNIDQ 101 Query: 56 NTIKKYL-QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLN---SEERNHHNFSELLL 111 + + + + T Q P S T ++ + + L ++E + + + Sbjct: 102 QMVGQLMMEMTRWQKEMYSAPQSGFTQSAPITPEISNIASRLLGLLNDEMDKEILAPSIC 161 Query: 112 FSCLSIFAACKGFITLLT----NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLL 167 G L + + V + + +++I +S S L Sbjct: 162 RELYYAVLKGPGGGLLRNCVSNHTGANRIAPVVHYIEQNFERNLTIEEIASVAGMSASTL 221 Query: 168 KKKLKQ-EQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNS 226 KQ + Q + R+ A++++ V V ++ GY+S S F F+++FG + Sbjct: 222 HDHFKQVTTVSPMQYVKSLRLHKARSMLSVGYQVAEVCYGVGYSSPSQFSREFKRYFGVT 281 Query: 227 PKRVS 231 P Sbjct: 282 PSEAR 286 >UniRef50_B0P929 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P929_9FIRM Length = 279 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 10/236 (4%) Query: 8 IFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQC 64 + + + G+ ++ +V + + +GF + + Sbjct: 49 VIVGRGVYTA-DGVTHDVKAGDTFIIYPSVVVTYSADAADPWEYCWVGFNGAEARLMIAQ 107 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 T T P + + ++ + R+ + +L+ L++ G Sbjct: 108 T---PFTRQRPVVRFEQPDEIREAIADIYR-ASGTTRSSELRAIGMLYIFLALLIEQAGA 163 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 L + + ++ + + IS S L + Q T ++ L Sbjct: 164 PAPAAGLSLEYVESAIRFIAHNYSGHIDIEAVAASVGISRSHLYRVFMQHISTPPNEYLA 223 Query: 184 DARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 R+ A L+ V+ +A GY YF F++ G P K ++ + Sbjct: 224 KFRISQACELLGHSSLPVSAVAASVGYDDPLYFSRVFKRITGMPPSAYIKAHQAGT 279 >UniRef50_UPI0001788F57 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F57 Length = 292 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 92/249 (36%), Gaps = 18/249 (7%) Query: 4 VCSVIFIHHAFNANI-LDKDYAFSDGEILMVDNAVRT-HFEPYERHFKEIGFTENTIKKY 61 V + +I I + + F G++L++++ +E + I F Sbjct: 43 VLEINYIKSGMGYYIINGQKFEFQQGDVLLINSNDLHCAYETKDLVMTVISFDSTWFIHN 102 Query: 62 L----QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSI 117 L + + + + G L ++ L E +++S L Sbjct: 103 LRFDPELFSPFREMGKHYMNLIPRDHPAMGKLRSLLFELQEEHVGEQRSYATVVYSLLLQ 162 Query: 118 FAA----------CKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLL 167 F A G ++ L +V ++ AHPW L+++ +Y+S S Sbjct: 163 FLATVNRQCRIEGEGGSEPSISERQLEKMRQVIMVMEQNFAHPWTLEELASLVYLSPSRF 222 Query: 168 KKKLKQE-QTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGN 225 + K+ L+ R++ A ++ V +A +CG+ + + F F+KH G Sbjct: 223 SEIFKRAVGMPPLLYLIHIRLEQAVTMLEGGHMKVMDVALECGFRTLTNFNRLFKKHIGM 282 Query: 226 SPKRVSKEY 234 +PK K++ Sbjct: 283 TPKASQKQH 291 >UniRef50_A9KIW0 Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIW0_CLOPH Length = 300 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 82/241 (34%), Gaps = 17/241 (7%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCT 65 + + ++ + ++++++ + E Sbjct: 68 FFYITNGSGQFSVEKEILDVKANDLIILNPTIVHTEISNPSKPMEYIVLG---------I 118 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCL-----SIFAA 120 L S+ L+ L E ++ + + + L I Sbjct: 119 EGIKFQAEDQGYILLNSSAHKSDLHLYFNSLAHEMKSEQPYRNFVCQNLLNIIFTMILRN 178 Query: 121 CKGFITLLTNGVLSVSGKV-RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTF 178 I++++ L+ + + + ++ + +++++ K+ T+ Sbjct: 179 DAFKISIVSGPKLTRECNIAKKYIEENYQENITIETLSSLVHLNKYYFVHNFKKQFGTSP 238 Query: 179 SQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 L+ R++ + +L+ S++ I++ G++S SYF AF++ +P+ K Y+ Sbjct: 239 INYLIKRRIEESMHLLVSTNHSLSSISQIVGFSSPSYFSQAFKRMTNITPQEYKKMYKVP 298 Query: 238 S 238 S Sbjct: 299 S 299 >UniRef50_B0ABU8 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0ABU8_9CLOT Length = 412 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 63/156 (40%), Gaps = 2/156 (1%) Query: 80 RASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKV 139 + + ++ + + N N +L + + + + + + K Sbjct: 256 IDGGADSNTIIDLNSKFLYKISNIKNIEDLSYWVIHMLDSFTQNVFNFNESKNPVLIQKC 315 Query: 140 RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VE 197 + +N L+ I + ++++ S K+E +FS L R++ +K L++ + Sbjct: 316 ISYINEHYNEDINLETIANIVHLNPSYFSSIFKKEVGVSFSNYLNKIRIEQSKLLLKNTD 375 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 S+ +IA + G+ SYF F+ +PK+ + Sbjct: 376 SSIVEIALEVGFEDQSYFSKVFKNLTKMTPKQYRQN 411 >UniRef50_B9M3B3 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M3B3_GEOSF Length = 292 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 4/232 (1%) Query: 2 SLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKY 61 V+ N K+ + GE++ +D H P + + I + Sbjct: 53 PAYSFVLTFDDKGNFQAKGKNITPAPGEVVAIDPGSLHHEVPGQEQSRYIAILISHTLHD 112 Query: 62 LQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC-LSIFAA 120 + LL E + + + SI A Sbjct: 113 REARQYDLAGKAYDFHRFFPGPELINLLKEFMTEHEAGLPGGEAVLAAVSIRITHSILRA 172 Query: 121 CKGFITLLTNGVLSV-SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTF 178 G + + + +V ++ + + + +S S + ++E + Sbjct: 173 AHGVNSSAPHISNRIEINRVVEYLHRRYGEKVTVDKMATVAAMSPSHFSRVFRKETGLSP 232 Query: 179 SQILLDARMQHAKNLIRVEGS-VNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 L+D R+ A+ L+ + V +A +CG+AS S+F FRK FG P Sbjct: 233 MNYLIDLRLAKARRLLVSGETCVTSVALRCGFASHSHFTDTFRKRFGCPPSD 284 >UniRef50_C7GHF4 Transcriptional regulator, AraC family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GHF4_9FIRM Length = 291 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 85/241 (35%), Gaps = 23/241 (9%) Query: 15 NANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPV 74 I D+ Y S+G+I++++ + + F + + + Sbjct: 49 KYKIADRLYDVSEGDIIILNPGQKHQALCTDPSNPATEFFVGLCDVRFGDFPENYLPLHL 108 Query: 75 ---------PAKFLRASNVPTGLLNEMIAYLNSEE----RNHHNFSELLLFSCLSIFAAC 121 + L S L ++ ++ E + + L L + Sbjct: 109 KDLTSDPATQSPILHTSGELRQKLFKICTAMSVENDVCRSGRYIMLKSYLMQMLILLLRE 168 Query: 122 KGFI-------TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE 174 + + + V ++ N + L I + +Y+S + + K E Sbjct: 169 QSEPVKINTGCSFESTSKKYVVDQIVNYFEDHYSEKISLDQIAENMYLSPFYISRIFKSE 228 Query: 175 -QTTFSQILLDARMQHAKNLIRV--EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 T + L++ R++ AK L+ +GS+ ++A + GY +F F+K FG P ++ Sbjct: 229 TGDTPIRHLINIRLEKAKELLENGFDGSIQEVAAKVGYDDVYHFSKLFKKRFGMPPSKIR 288 Query: 232 K 232 + Sbjct: 289 R 289 >UniRef50_A6M1S5 Transcriptional regulator, AraC family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M1S5_CLOB8 Length = 286 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 83/221 (37%), Gaps = 8/221 (3%) Query: 23 YAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFL 79 Y GE ++ + +E ++ + F ++YL+ + + + K Sbjct: 67 YTIKAGEGFLLTPNIINTYEADKDDPWNYVWVEFEGLKAQRYLEEIGLSSKNLIFTPK-- 124 Query: 80 RASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSV-SGK 138 +N + + ++ LN+ L ++ T + + + Sbjct: 125 EYNNDDNSIKDNLMFLLNNPSAPDSAILGHLYLFFYALLENSSFNNTKSASNLQEFYVRE 184 Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVE 197 N + + +++I + S K K +TT + L+ R+ A +++ Sbjct: 185 AINYIEKNYNNNISVENIAKWCNLDRSYFGKIFKNSMKTTPQEFLIKYRLSKACEMLKDN 244 Query: 198 -GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 S+ +I+E GY + +F +F++ + SP++ + + + Sbjct: 245 NISIREISELTGYPNQFHFSRSFKEVYNMSPRQWRNQNKTK 285 >UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein n=6 Tax=Vibrio RepID=Q7MCG4_VIBVY Length = 268 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 84/236 (35%), Gaps = 10/236 (4%) Query: 5 CSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYER----HFKEIGFTENTIKK 60 + + + +L+ HFE + ++ F+ + Sbjct: 31 SIIQITTGSKRLYWQETTLDIDAHSLLLCRANHALHFENLPQAGQFSSRQFCFSLPPTSE 90 Query: 61 YLQCTNIQTVTVP---VPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSI 117 L + T P + +R LN + E L+ Sbjct: 91 MLSLSERNGTTTPHLTLHHPVVRCDKALNHTLNLLAGLPLDELSTE--TLTFWLYGFYQQ 148 Query: 118 FAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTT 177 A + T S K+ + +P+ +++D C IS++ L ++LK+E T Sbjct: 149 LAERGVLHLMFTPQGQSFEQKLSEFIAQQPSKDHQIEDACQHFAISKATLIRRLKEEGTQ 208 Query: 178 FSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + ++L R+ HA NL++ +++ CGY S F FR+ FG SP+ K Sbjct: 209 YREVLSKVRLSHALNLMQQGHRKTAELSLMCGYQSPDKFSQRFRQRFGLSPREYCK 264 >UniRef50_Q5WK82 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK82_BACSK Length = 297 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 79/239 (33%), Gaps = 18/239 (7%) Query: 6 SVIF---IHHAFNANILDKDYAFSDGEILMV--DNAVRTHFEPY---ERHFKEIGFTENT 57 S+IF I + I + Y + +V + R ++ F I + Sbjct: 53 SIIFQYTIAGSGVLEIGKERYTVGQHQAFIVSVPSDHRYYYPENAKEPWEFIYISLQGAS 112 Query: 58 IKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSI 117 ++ Q IQ V + L+ + + + + L Sbjct: 113 VQDIWQRL-IQKSGPIVSLP------PNSPLIRSLYSIYADTKADGLRDPYLAATQGYQF 165 Query: 118 FAACKGFITLLTNGVLSV-SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-Q 175 C + + + L +I + + +S L + K++ Sbjct: 166 LIECFRAMAEERPQNEPYHYQRALAYIEAHYHEQICLDNIAEEVGVSRYTLTRLFKKQLH 225 Query: 176 TTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 TT + D RM+ A +L+ ++ +IA GY +YF FR++ G+S + + Sbjct: 226 TTPISYVTDLRMRKACSLLLHTNRTIKQIAADVGYPDDNYFHKVFRRYTGSSATQFRRN 284 >UniRef50_P32677 Uncharacterized HTH-type transcriptional regulator yijO n=33 Tax=Gammaproteobacteria RepID=YIJO_ECOLI Length = 283 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 6/144 (4%) Query: 107 SELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESL 166 + L++ S LS G + ++ +R+ ++ + A + + YIS + Sbjct: 142 ARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNY 201 Query: 167 LKKKLKQEQ-TTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFG 224 L ++ F++ L R++HAK L++ + V ++A CG+ ++YF FRK+ Sbjct: 202 LSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTE 261 Query: 225 NSPKRVSKEYRCQSHTGMNTGNTM 248 SP ++Y H+ + T Sbjct: 262 RSPSEYRRQY----HSQLTEKPTT 281 >UniRef50_B7MQA3 Putative AraC-type DNA-binding domain-containing protein n=12 Tax=Enterobacteriaceae RepID=B7MQA3_ECO81 Length = 289 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 82/238 (34%), Gaps = 9/238 (3%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRT-HFEPYERHFKEIGFTENTIKKYLQCT 65 ++ I D+ Y G++++ ++ V + R I N I Sbjct: 43 ILITEGDGEYFIGDRIYPVRKGDLVIYNSQVVHDEYLESGRPIGTICCGINNISCPGLRE 102 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFI 125 N VP L L + + ++ LL + + + Sbjct: 103 NALIPDDIVPVIPLYHHYATVEKLMSSVFTVINQHAVEGPAMAQLLTQVVLKYIEGNVLL 162 Query: 126 TL---LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQI 181 ++ +++ ++ P +L + +S + + K+ + Sbjct: 163 RTGNDAIQRHENLLDSIKSYIDRNFYEPIRLDTLATKFNVSPYYVSHEFKRRYGYSPMDY 222 Query: 182 LLDARMQHAKNLIRVEG----SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 L+ R+ A++L+ + + IA + G+++ S+F F+ G +P + K+YR Sbjct: 223 LIKRRLGEAQSLLTTDKGGREKITSIAYRVGFSNLSHFQNYFKNKVGKTPGQYRKDYR 280 >UniRef50_C7H3E2 Transcriptional regulator, AraC family n=4 Tax=Clostridiales RepID=C7H3E2_9FIRM Length = 306 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 84/240 (35%), Gaps = 8/240 (3%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERH---FKEIGFTENTIKKYL 62 + + + + G +++ + Y I FT +K L Sbjct: 70 ILYVASGKAHFWFDGVEEVVTSGHMVLYQPKEIQKYVYYVEDHPEVFWIHFTGYDVKNIL 129 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK 122 N + + + L ++I L E + ++ L L + + + Sbjct: 130 ---NYHGIPLDKHVFYSGTLPDYKMLFRKIIRELQQCEYGYEDYIASLFNIILFLVSRQQ 186 Query: 123 GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQI 181 T + N + D + L+IS + + KQ + + +Q Sbjct: 187 QESEKTTTSIPEEIEAAVAYFNENYNTKVSVDDYAESLHISTNWFIRNFKQYMKISPAQY 246 Query: 182 LLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 +L RM +A++L+ E ++ +IAE GY + YF F+K +G SP + K + Sbjct: 247 ILSLRMVNAQSLLENTEYNIGEIAEIVGYDNPLYFSRVFKKEYGVSPAQYRKNLEESTEK 306 >UniRef50_C3SIM7 Membrane protein n=86 Tax=Enterobacteriaceae RepID=C3SIM7_ECOLX Length = 283 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 6/144 (4%) Query: 107 SELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESL 166 + L++ S LS G + ++ +R+ ++ + A + + YIS + Sbjct: 142 ARLIVASLLSHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNY 201 Query: 167 LKKKLKQEQ-TTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFG 224 L ++ F++ L R++HAK L++ + V ++A CG+ ++YF FRK+ Sbjct: 202 LSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTE 261 Query: 225 NSPKRVSKEYRCQSHTGMNTGNTM 248 SP ++Y H+ + T Sbjct: 262 RSPSEYRRQY----HSQLTEKPTT 281 >UniRef50_B5XY24 Transcriptional regulator, AraC family n=3 Tax=Klebsiella RepID=B5XY24_KLEP3 Length = 277 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 62/151 (41%), Gaps = 2/151 (1%) Query: 92 MIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPW 151 +++ + + L++ + LS + + + + V++ + + P Sbjct: 127 LLSLNEVSLQPDPLTARLVVAALLSHCREQLVGLEMRVSRSRDLFLAVQDYLEENLSLPL 186 Query: 152 KLKDICDCLYISESLLKKKLKQEQ-TTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGY 209 + + +I+ + L ++ F++ L R++ AK L+R + V +IA CG+ Sbjct: 187 TRESVAKRFHITPNYLSHIFQKSGSVGFNEYLTRVRLEKAKQLLRGYDLKVKEIAHNCGF 246 Query: 210 ASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 ++YF F+++ SP + R Sbjct: 247 VDSNYFCRVFKRYTERSPSEYRRHCRSAQQA 277 >UniRef50_C6D3B4 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3B4_PAESJ Length = 300 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 76/235 (32%), Gaps = 10/235 (4%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERH---FKEIGFTENTIKKYLQ 63 + ++ G +++ H+ I FT + YLQ Sbjct: 70 IYITGGKGRFRFHNETIEVPSGSLVVYTPGQPQHYSYQAEDGTEVYWIHFTGYSAYDYLQ 129 Query: 64 CTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKG 123 + T V + + T L ++I LNS + L L++ Sbjct: 130 QFGLLTQPVHT----VGIIDDVTALFKKIIQELNSHRPLGSHMVNAYLLEMLTLLGRRLQ 185 Query: 124 FITLL-TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQI 181 G ++ ++ K + + D+ +S K K+ T + Sbjct: 186 TAEEPGAQGRHPDINQMIAFIHEKYSESLSISDLAGECSLSVFRFIHKFKEVTGMTPMKY 245 Query: 182 LLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 + + R+ AK L+ V ++A GY + YF FR G P K+++ Sbjct: 246 ITEIRINEAKKLLSESSLHVKEVAAVVGYDNPLYFSRIFRSTVGIPPSEYKKQFQ 300 >UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKU1_9GAMM Length = 348 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 6/224 (2%) Query: 21 KDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLR 80 + E++ + E + EIG +++ ++ + + Sbjct: 127 RVVRIVRPELVNTPAKLHYETERLLAQWAEIGPAFGESRQWYSRIDLDYPAPEYISLYEE 186 Query: 81 A--SNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGK 138 N+ + I + +F+ + A + V +G+ Sbjct: 187 VLGPNLHFEKAHTQIVFPRVLLELPLSFANEQAAALCEQQCAA---LLGQMQAVQGFTGQ 243 Query: 139 VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIR-VE 197 VR ++ P H ++D L +SE L+++L +E TT+ +++LD RM+ A + +R E Sbjct: 244 VRRLLANAPGHHPSIEDAAGKLAMSERSLRRRLSEEGTTYKEVVLDFRMELASSYLRGRE 303 Query: 198 GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 ++ ++A GYA S F F +++G +P + + TG Sbjct: 304 MTIQEVAFLAGYADASNFHRTFSRYYGATPGEFRAGEQTAAPTG 347 >UniRef50_C6D3K6 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3K6_PAESJ Length = 277 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 9/241 (3%) Query: 5 CSVIFIHHA-FNANILDKDYAFSDGEILMVDNAVRT-----HFEPYERHFKEIGFTENTI 58 ++ + + K Y G +L+ + H+ +F Sbjct: 38 SELLLVEEGRGTFVVDGKPYEVGPGTVLLYHRGIWHEEWSTHYPFRATYFAFKDLQVKGC 97 Query: 59 KKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 + Q + + K +++ L E+ + L ++ LLL + Sbjct: 98 PQNYFLGPDQAPVIELGEKTDETASLVRECLAELHSGLAESRAAANHLFGLLLARLARLV 157 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTT 177 ++ +V K R + P L+ + ++S+ L +QE + Sbjct: 158 PGESTERRIVKPAEAAVI-KARGYIEENYQQPITLEQLAKVTFVSKYYLSHLFQQEVGIS 216 Query: 178 FSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 Q L+ RM+ AK + V +I E GY S F F+K G +P + + R Sbjct: 217 VIQFLIQCRMEAAKRYLIMTGRPVKEIGELVGYQSEPTFHNLFKKVTGLTPGQFRESARE 276 Query: 237 Q 237 + Sbjct: 277 K 277 >UniRef50_B0MKI2 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKI2_9FIRM Length = 284 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 75/244 (30%), Gaps = 14/244 (5%) Query: 5 CSVIFIHHA-FNANILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKK 60 C +I++ F + + G ++ + Sbjct: 41 CEIIYVRSGYFELFLDGHTHRIDAGCCSLIIGGSMHGGTPKDNCRYDCLVFDMAALLKSS 100 Query: 61 YLQCTNIQTVTVPVPAK--FLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 + ++Q + F A + P +I + +E + L L Sbjct: 101 QICTLHLQPIINHERRFITFFSADSEPAKDAKAVIDAMLEKEPGYEFTVPGRLLCMLGHI 160 Query: 119 AACKGFITLLTNGVLSVSG-----KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 A + + V + + L+++ + ++ + + K+ Sbjct: 161 VARQEHYQSGETAASDIKKVRRFKNVISYIEQNYRKNITLEELANECGMNRNYFCRAFKE 220 Query: 174 E-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV- 230 T + L R++ A LI + + IA +CG+ SYFI F+ G +P+ Sbjct: 221 YTGKTPVEYLNYFRIESACELIASTDEKLIDIAMKCGFNDYSYFIKVFKSMKGVTPRDYC 280 Query: 231 SKEY 234 + + Sbjct: 281 RRSF 284 >UniRef50_A9KQP4 Two component transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=A9KQP4_CLOPH Length = 533 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 24/239 (10%) Query: 1 MSLVCSVIFIHHAFNANILDKDYA-FSDGEILMVDNAVRTHFE----PYERHFKEIGFTE 55 + L C + I + G++ + + FE Y +I Sbjct: 308 LPLTCVY---EEDYPIIIEKTIFEAIQKGDVKLAVTSTHQFFEWMVKTYPDCMTDIKLKV 364 Query: 56 NTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCL 115 + + + + YL + + L L+ Sbjct: 365 IEFVLWAEHIAYE-------------NGGMIYEFRSRRDYLPTIVEIEQ-YDALRLWFAE 410 Query: 116 SIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE- 174 I AC+ +S K + + L+++ + IS K K+E Sbjct: 411 RIEIACRNVENKKKVTSISTVEKAKLYIRDNYQKDLSLEEVSRQVDISPYYFSKVFKEET 470 Query: 175 QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 T F L + RM AK L+ E S+ +I GY+ +YF +F+K+ G +P + Sbjct: 471 GTNFIDYLTELRMSVAKQLLLESERSMKEIGIMVGYSDPNYFSRSFKKNIGITPTEYKE 529 >UniRef50_A6M1I8 Transcriptional regulator, AraC family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M1I8_CLOB8 Length = 279 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 11/229 (4%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQCT 65 ++ + +K Y GE ++ T+++ + + F N L+ Sbjct: 46 ILNGKGKYYVNNKCYELQRGEAFLICPGESTYYKADKEEPWEYCWVSFDGNDASTILKNC 105 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFI 125 + + ++ + L +I + N + L S++ Sbjct: 106 GLSKNNLIFKDN---SNGIFKERLLSLIHNYEEDSHNEYALIGQLYMCFSSMYDQVNIKE 162 Query: 126 TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLD 184 N S + K R+ + + K+ DI + I + L K +E + + + L+ Sbjct: 163 ---KNTCESYADKARDYIYNNFGYDIKVSDIAKYVGIDRTYLYKIFMEEYKISPQKYLIS 219 Query: 185 ARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 +R+ A NL+ ++ +I+ CG+ T F F+K F +P + K Sbjct: 220 SRLNTAVNLLETTKMNITEISYSCGFKDTPTFYKHFKKQFNITPVQYRK 268 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 89/236 (37%), Gaps = 10/236 (4%) Query: 3 LVCSVI-FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE----IGFTENT 57 S+I I + D+ + I++ + +FE + + F Sbjct: 24 HSPSIIQIIKGSKRLFWKDEAFDILHPNIMLCEANASLNFENLPQQGRFLSRMFSFHCVP 83 Query: 58 IKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSI 117 + L+ + + VPA + LN + ++ E + Sbjct: 84 SDEMLELSMSNALGNYVPA--VETDKALQATLNALFSF--ERESLSEATQRYWMMGLYQQ 139 Query: 118 FAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTT 177 A L T+ S S K+ ++ P L+ + + +S + L +KLKQE T Sbjct: 140 LAERGLLHRLFTSSNTSFSQKLSRYLSRSPGDDHPLEFVAERFAMSRATLIRKLKQEGTQ 199 Query: 178 FSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + ++L + R+ HA L++ +V +A+ CGY S F F+ FG +P K Sbjct: 200 YREVLAEVRLNHALYLMQNGSYNVALLAQLCGYQSEGRFSQRFKGKFGLTPSEYIK 255 >UniRef50_A7B0Y7 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B0Y7_RUMGN Length = 276 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 31/235 (13%), Positives = 86/235 (36%), Gaps = 13/235 (5%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTH---FEPYERHFKEIGFTENTIKKYLQ 63 + + + + + G+++++ + + + +G +L Sbjct: 45 LFVVSGEGSFSFNQEQSPLRRGDLVIIPPYTEHTERSSQNHPLEYYVLGIDGI---SFLS 101 Query: 64 CTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKG 123 + + V L +M+ + + + + LL + + Sbjct: 102 QKDRECAQVF---CNFEHDPSIHELFRQMLYEIRTAQYGSQTICQHLLEILILKIIRSQQ 158 Query: 124 FITLLTNGVLSVSG--KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQ 180 I + N + +++ ++ A L + ++++ + + + Q Sbjct: 159 LIPVSINSIRMTKECAQIKEYLDSNYAEHITLDTLTGLTHMNKYYMVHSFTKYAGLSPIQ 218 Query: 181 ILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 L R++ A++L++ S++ IA G++S SYF FRK+F +P + +E+ Sbjct: 219 YLNQTRLKRAQHLLKNTNYSISDIASSTGFSSQSYFTQIFRKNFNMTPVKYRQEH 273 >UniRef50_Q65MB5 Probable transcriptional regulator n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65MB5_BACLD Length = 281 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 86/240 (35%), Gaps = 13/240 (5%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRT---HFEPYERHFKEIGFTENTIKKYLQCT 65 + I Y G +++++ E E I F+ + I+ L+C+ Sbjct: 40 LLSGERTYFINQSVYTAEKGTMIIINPHDLHRTSSTEVQEFERILINFSHDFIEPLLKCS 99 Query: 66 NIQTVTVPVPAKF----LRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCL----SI 117 + + + P F LR +L EM ++ H + LLF L Sbjct: 100 HYRLLPFPENQNFIAFSLREQAAVEHMLMEMKKECKLKKEGHEDVVRALLFQLLFTIYRS 159 Query: 118 FAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQT 176 A T + + ++ + +N L + YIS S L + K+ Sbjct: 160 LAGGGRNQTRPLHPMDEKISEIASYINCSFQETMTLDGLAGQFYISPSYLSRVFKKVTGF 219 Query: 177 TFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 + + R++ AK +R + + IA G+ S+F F++ G P + K+ R Sbjct: 220 HLQEYIRHIRIREAKKRLRDTDEKILDIAADTGFKHISHFNKVFKEIVGIPPLQYRKKSR 279 >UniRef50_Q5WIZ4 Putative uncharacterized protein n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WIZ4_BACSK Length = 283 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 44/245 (17%), Positives = 86/245 (35%), Gaps = 18/245 (7%) Query: 6 SVIFIHHAF-NANILDKDYAFSDGEILMVDNAVRT-------------HFEPYERHFKEI 51 +I +H I D + + G+I++V + Sbjct: 39 EIIMVHQGTCTFFIDDCFFELASGDIVIVPGNSIHCSLLDKGKTVTTSALYFCPSLLASM 98 Query: 52 GFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMI-AYLNSEERNHHNFSELL 110 +E+ L T T + + + + GL +E+ ++ + + L+ Sbjct: 99 IGSESDSLHSLFTTAKTTKQYRYYMEREKQAFL-AGLFDEIAKETAIADLYSGETVALLI 157 Query: 111 LFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKK 170 ++ + + C L+ V + + ++ LK + + S KK Sbjct: 158 RYAIVFVSRNCGTAQEKLSPLVPAWIKESLAYIDAHLHEELDLKMLAAHACVHPSYFSKK 217 Query: 171 LKQE-QTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 K T+ + L R+ AK+L++ + S+ IAE CGY S +F FR G +P Sbjct: 218 FKASIGLTYIEFLKSKRLVKAKDLLKTTDLSIQAIAEACGYHSMPHFYRTFRAATGTTPA 277 Query: 229 RVSKE 233 K Sbjct: 278 AYRKN 282 >UniRef50_Q5WK33 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK33_BACSK Length = 294 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 68/226 (30%), Gaps = 13/226 (5%) Query: 15 NANILDKDYAFSDGEILMVDNAVRTHF-----EPYERHFKEIGFTENTIKKYLQCTNIQT 69 Y G+ V + E F + + + + Sbjct: 62 ELVHEGTLYKVEAGQAFFVSLPSAHCYYYPEEETEPWEFLYVTIEGKEALRLQKHMENKY 121 Query: 70 VTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLT 129 V + S L E ++ + S+ LS F + Sbjct: 122 GPVF---SLQKDSEPIRRLFKLYAETAAGEIQDSYTGSQKAYEFILSCF---RFLEVPPK 175 Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQ 188 V + + A P L++I S+ K+ K E T + R++ Sbjct: 176 QVVKEPLARAIRYIEANYARPLTLEEIAQEAGWSKYYFIKQFKTELNITPMNYVTIIRIK 235 Query: 189 HAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 A +L+ + + ++ ++A Q G +YF F+K G S + K Sbjct: 236 KAASLLAQTDDTIAEVAYQVGMDDPNYFTKVFKKTVGVSASKFRKN 281 >UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 Tax=Aeromonas RepID=A0KMW4_AERHH Length = 270 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 81/231 (35%), Gaps = 3/231 (1%) Query: 3 LVCSVIFIHHA-FNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKY 61 ++I++ +K AF L++ + F K + Sbjct: 25 YAPTIIWVEQGHKQLWWQEKRLAFDQASWLLIPAGHQLTFVNQPEQGKFRSRALTLLTPP 84 Query: 62 LQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC 121 T P+ L S + + + R + LL + A Sbjct: 85 PVEWLGATQAGPLREPRLTVSPALAFCFELVCSMADR--RLNEATQAQLLQGFYAELQAA 142 Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQI 181 G L +++ ++ + ++P L+ + +S + + +KL E +F Q+ Sbjct: 143 GGLDLLFPAHTMTLGERLARYLGVEPGADHTLEGVAPHFAMSRASMARKLAAEGRSFRQL 202 Query: 182 LLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 L RM HA L++ + A CGY S S F F++ FG +P + + Sbjct: 203 LTQVRMSHALTLLQQGLVPLETALACGYDSPSRFAARFKQEFGLTPYQYLR 253 >UniRef50_B0NXL6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NXL6_9CLOT Length = 282 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 84/231 (36%), Gaps = 6/231 (2%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY-ERHFKEIGFTENTIKKYLQC 64 + + + GEI ++D + + E F F + + Sbjct: 54 FIYVAEGELHLEHDSQHEVAKKGEIFLIDCSKPHAYYVDKECEFYYFHFAGRAAYEITKD 113 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 + + S+ ++ I+ L E+ + + CL + A Sbjct: 114 LILDNKGCLFH---IINSDRIRKQMDLTISPLFYEQPISDVSLSCMAYQCLCMLQASNDV 170 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 T + S+ + H L+++ +S K+E + + + Sbjct: 171 FTTEESDENSMLSSTMTYIREHLGHKLTLEELSRQASLSPYYFAHLFKEETGISPIEYVA 230 Query: 184 DARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 ++ +AKN+++ E S+ +IA+ GY+S + FI AF+K G SP R ++ Sbjct: 231 MTKINYAKNILKTTENSITEIADLLGYSSDASFINAFKKRAGLSPARFRRK 281 >UniRef50_A0Z5W7 AraC-type DNA-binding domain-containing protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5W7_9GAMM Length = 339 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 14/231 (6%) Query: 24 AFSDGEILMVDNAVRTHFEPYERHFKEIGF--------TENTIKKYLQCTNIQTVTVPVP 75 G + + TH + + YL N + V + Sbjct: 109 VIESGTVFSIKQHDDTHIVSIRGWNSQWNPAMQDALVSSLCLATDYLTPENCKPRYVKLI 168 Query: 76 AKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVL-- 133 + L+E I + E LL L+ + L+ + Sbjct: 169 QPEPTNTATWHACLSETIEWEAQEVEVAWESKALLHPRLLADESTALLNDALMEPQLQQV 228 Query: 134 ---SVSGKVRNIVNMKPAHPWKLKD-ICDCLYISESLLKKKLKQEQTTFSQILLDARMQH 189 S+ +V + ++ D + L + L++ LK++ T+F +IL R +H Sbjct: 229 LRASLHHRVESQISQHLQAGNTTPDLVASDLNMGTRTLQRLLKEDGTSFKEILKLLRQEH 288 Query: 190 AKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHT 240 AKNL+ + ++A + GY F +F+ FG SP + + + T Sbjct: 289 AKNLLDTREPIAQVASRLGYDDPGTFSKSFKAWFGLSPSDYIENKKNPTKT 339 >UniRef50_C6JCU7 Transcriptional regulator n=3 Tax=Ruminococcus RepID=C6JCU7_9FIRM Length = 282 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 86/242 (35%), Gaps = 16/242 (6%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIK------ 59 + + + + +K + +++ V + + P++ ++ I F NT Sbjct: 43 IIRILEGSLTVTLDEKSFTAVKNDVIFVHSGILHSGIPHDCVYQCIVFDMNTFLKNNPVC 102 Query: 60 -KYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 +Y+Q Q + F ++ + + ++ + + + Sbjct: 103 GEYIQKILHQETMLF--PHFSDEHPQILNCISVLFDAMYEKDTGYELTVFGQFYHFFGLI 160 Query: 119 AACKGFITLLTNGVLSV-----SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 + FI T +V + A+P L+++ + +S + + Sbjct: 161 FSNHYFIENPTRTRRDYKRILQLKQVLEFIEKNYANPITLQELSASVSMSPKYFCRFFSE 220 Query: 174 -EQTTFSQILLDARMQHAK-NLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 T L R++ A L + S+ +IA + G+ SYFI F+K+ G +P + Sbjct: 221 MTHQTPVDYLNRQRIEEACLQLAATDDSITEIAYRNGFNDLSYFIRTFKKYKGMTPGKYK 280 Query: 232 KE 233 + Sbjct: 281 RR 282 >UniRef50_C3R936 Transcriptional regulator n=2 Tax=Bacteroidales RepID=C3R936_9BACE Length = 286 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 88/241 (36%), Gaps = 14/241 (5%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYER--------HFKEIGFTENTIK-- 59 +H N D F+ G+++++ ++ +E + + F+ + ++ Sbjct: 45 VHGQGNRMAGDTLQPFTAGDVVLIPPSMIHRWEYNADSTDEEGHVRYLMVAFSHSLLERC 104 Query: 60 -KYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLF-SCLSI 117 + + V P L+ + ++ +++ +N + + L + Sbjct: 105 IEVFPELRNRLSGVQFPTDALKFGLESSRIIRRILSEINEMDELERLSAMFRLLPVIFTS 164 Query: 118 FAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQT 176 + + ++ V H L DI + + ++ S K+ + Sbjct: 165 SDYTLAGKPMRIERDVRRMQQICAYVMKHYVHSIALDDIAEEVGMNRSAFCSYFKRCKGM 224 Query: 177 TFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 TFSQ + R+ A +L++ + V +I G+ +F+ F G SP + K+Y+ Sbjct: 225 TFSQFVTQYRLNTACHLLKNTQRGVAEICYMVGFNDLPHFVRVFTNTMGMSPTKYRKQYK 284 Query: 236 C 236 Sbjct: 285 N 285 >UniRef50_B8I425 Two component transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B8I425_CLOCE Length = 538 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 81/234 (34%), Gaps = 21/234 (8%) Query: 16 ANILDKDYAFSDGEILMVDNAVRTHFEPY-ERHFKEIGFTENTIKKYLQCTNIQTVTVPV 74 D + F + ++D + E + + I YL NI + Sbjct: 304 IQYSDLNSFFRYEDYSILDKYQKQLIENIKSGNELGVKENTKLISDYLTNNNIN---IHY 360 Query: 75 PAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLS 134 F + + ++ +++E++ L + + +LL + Sbjct: 361 MRNFYYTTLSSINNIRISVSSVDTEKKYSEGEDIASLIKLIEKTDKAEELNSLLEEVAVR 420 Query: 135 VSGKV---------------RNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTF 178 ++ KV + + L ++ + +Y+S + + K+E +F Sbjct: 421 IASKVNSFNNKSIKLILRKAIDYIQEHYNEQVTLNEVAENIYVSTFYISRMFKKELGKSF 480 Query: 179 SQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 L D R+ AK L++ ++AE+ G + YF F+K+ G +P Sbjct: 481 VDYLNDVRIDKAKELLKDVRYKTYEVAEKVGISDPHYFSKLFKKYSGMTPSEYR 534 >UniRef50_C0ABA0 L-rhamnose operon transcriptional activator n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ABA0_9BACT Length = 297 Score = 133 bits (334), Expect = 6e-30, Method: Composition-based stats. Identities = 35/251 (13%), Positives = 85/251 (33%), Gaps = 20/251 (7%) Query: 5 CSVIFIHHAFNANI-LDKDYAFSDGEILMVDNAVRTHFEP-----------YERHFKEIG 52 C + + ++ + + S G++ ++ F Sbjct: 47 CELAMVTGGRGVHVLEGESFHVSTGDVFVLQGRQVHCFRERQGLALINVMYDPERLPLPL 106 Query: 53 FTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGL------LNEMIAYLNSEERNHHNF 106 + Y ++ R L + + + + H Sbjct: 107 GLLRRLPGYSALFMLEPTFRSTHRFSSRLRLARRELGSAEAIVERIENESKAAQEGHEAV 166 Query: 107 SELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESL 166 LL + + + + L G++ +++ + PW L+ + + +S S Sbjct: 167 LLSLLVELMVLLSRHYAQSDTRESHALLQVGQLVSMLEQRFGEPWTLEQLAEQARVSRSN 226 Query: 167 LKKKLKQ-EQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFG 224 L + +Q + L+ R++ A+ L+R + + +IA +CG++ ++F FRK G Sbjct: 227 LLRMFRQATGQSPIDFLIGLRIEAARRLLRRSDLGMTEIALECGFSDGNFFPRQFRKTCG 286 Query: 225 NSPKRVSKEYR 235 +P ++ R Sbjct: 287 VTPSIYRRQMR 297 >UniRef50_B4WW69 Transcriptional regulator, AraC family protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WW69_9SYNE Length = 291 Score = 133 bits (334), Expect = 6e-30, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 11/225 (4%) Query: 18 ILDKDYA--FSDGEILMVDNAVRTHFE-PYERHFKEIGFTENTIKKYLQCT-NIQTVTVP 73 + + Y + G++ + + + + + H+ + + +++ + T V Sbjct: 65 MGGRYYTGLYRRGDLCITPSGFSSGYRAEDDDHYLYVQVSSIFLQRISEEISETGTGKVE 124 Query: 74 VPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC-LSIFAACKGFITLLTNGV 132 + F LL + A ++ + +SE L + +S + Sbjct: 125 LLPNFQTRDPQVESLLGLLHAEVHRNGQMGQLYSESLANALAVSFLRNHASTQPQVAQYE 184 Query: 133 LSVSGK----VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARM 187 + + V + KL D+ + +S+S ++ K+ T Q LL R+ Sbjct: 185 SGLGDRKLLLVTRYIADALEQDIKLADLAQLVGVSQSHFSRQFKKSMGLTPYQYLLQQRI 244 Query: 188 QHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 + AK L+ + + S+ IA CG+ S S+F FRK G +P Sbjct: 245 ERAKQLLKQTQQSLVDIALVCGFDSHSHFSRQFRKATGMTPSAYR 289 >UniRef50_C5RJU1 Two component transcriptional regulator, AraC family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJU1_CLOCL Length = 540 Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 92/246 (37%), Gaps = 19/246 (7%) Query: 1 MSLVCSVIFIHHAFNANILDKDYAFSDG--EILMVDNAVRTHFEPYERHFKEIGFTENTI 58 M+ + + + I D G + ++ D + E + E+ +E Sbjct: 294 MAALDYRLILGSNRIIWIED----IEPGSKDKIIFDKNMEHEMESSIKVGTEVEVSETID 349 Query: 59 KKYLQCTNIQTVTVPVPAKFL----------RASNVPTGLLNEMIAYLNSEERNHHNFSE 108 + + + T+ + L ++SNV + + E + ++ Sbjct: 350 RMFDKLTDTKASFKDYQIYLLEMLTAILKAAQSSNVDLASIFGRDYNIFVELYSFNDLKH 409 Query: 109 LLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAH-PWKLKDICDCLYISESLL 167 + + + + + K ++ ++ + + D+C+ L+IS++ Sbjct: 410 VKTWLKEISLKIMSHIMKDRKDTCELLIEKAKDYIHRNYSDSELNINDLCNHLHISQTYF 469 Query: 168 KKKLKQEQ-TTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGN 225 K+E TF L RM AK L++ + ++A + GY+ +YF Y+F+++ G Sbjct: 470 SLLFKKETKMTFINYLTSIRMDEAKQLLKTTDMKTFEVARKVGYSEPNYFSYSFKRYLGM 529 Query: 226 SPKRVS 231 SP Sbjct: 530 SPSEYR 535 >UniRef50_UPI0001C374E0 transcriptional regulator, AraC family protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C374E0 Length = 267 Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 86/233 (36%), Gaps = 5/233 (2%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCT 65 ++F + K+ + +++ + F P + + Sbjct: 25 QLLFFRTPAIFTVKGKETTLNGHSVMLCSSGSLRSFRPASSKGIRYDMVVLNMNSSDKQY 84 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA-CKGF 124 L V + +L M +++ + F EL + L + C Sbjct: 85 VESMSIPFDTPIELSDDYVISAMLRAMSSHIMHKSLYQSEFMELSMRLILIAISENCHKL 144 Query: 125 ITLLTNGVLSVSG--KVRNIVNMKPAHPWKLKDICDCLYISESLLKKK-LKQEQTTFSQI 181 + + +R+ + +P W ++I + + IS + L T Q Sbjct: 145 PPGKVETIPRYNELKAIRDAIYDEPMTHWSAEEISEDMGISRPYFHRLYLSAFGVTCRQD 204 Query: 182 LLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 ++++R+ +A L+R + S++ +AE CGY S +YF+ F++H G +P + Sbjct: 205 IIESRLIYASELLRTTDMSISAVAETCGYDSDAYFMRQFKQHKGCTPSEYRRR 257 >UniRef50_D1PME6 Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PME6_9FIRM Length = 323 Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 82/244 (33%), Gaps = 17/244 (6%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRT---HFEPYERHFKEIGFTENTIK------- 59 I + Y + G ++M+ + F+ ++ Sbjct: 77 IAGTCRYFVEGAAYIVNAGSVVMIGENQIHKTASLGDSPSSRIVVNFSREYLEKVAAAFP 136 Query: 60 -----KYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC 114 +L ++ + ++ +L+ ++ LL Sbjct: 137 EVDFFSFLTDERNHLLSAITVKQQNHIQSILQQMLDLEGETSPEDQALRAMLLATLLLEL 196 Query: 115 LSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ- 173 ++ + + +++ + A L I YIS L + K+ Sbjct: 197 KALCVQQQCQGGEKGRVSNHIVEQIQAYIAQHYAEKLTLTGIASQFYISPYYLSRLFKKS 256 Query: 174 EQTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + + + R++ A+NLI + S++ +A Q G+ +T++F F+ G SP++ + Sbjct: 257 TNLSLIEYINGVRIKAAQNLIEKSGESISSVAGQTGFMTTAHFRRVFKDATGLSPQQYRQ 316 Query: 233 EYRC 236 +Y+ Sbjct: 317 QYKR 320 >UniRef50_A8RL67 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RL67_9CLOT Length = 272 Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 95/245 (38%), Gaps = 9/245 (3%) Query: 6 SVIFIHHAFNANI-LDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKY 61 + ++ +I D+ Y GE L+ V H E + F++ + Sbjct: 30 ELYYLEEGERFHIIQDRLYCIHPGEFLIFSPYVMHHSYGQENVPFKRLLVYFSKEEVDS- 88 Query: 62 LQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAAC 121 +Q + V R V +L++++ + + H ++ LL +++ Sbjct: 89 VQLLKVLEKGTGVYKPDQREKQVVHRMLDDLLKEQDDPQAYHEDYIHTLLN--MALLTIA 146 Query: 122 KGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQ 180 + T + + V + ++ + + Y+S L ++ K+ +T Q Sbjct: 147 RNIQTPVKPEKRNRITDVISYIHQNYQEDISIDQLAQMSYVSPYYLCREFKRYTNSTIIQ 206 Query: 181 ILLDARMQHAKNL-IRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 + R+ +A+ + + ++ +I+ G+++ ++F F+ G +P K Y+ ++ Sbjct: 207 YVNVTRVMNAQRMFMETNKNITEISRDTGFSNITHFNRVFKSVMGMTPSNFRKMYKTEAG 266 Query: 240 TGMNT 244 G T Sbjct: 267 HGRRT 271 >UniRef50_C6CWF4 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CWF4_PAESJ Length = 451 Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 3/123 (2%) Query: 116 SIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE- 174 + +A + ++V K + + + L++ + ++++ K KQ+ Sbjct: 329 YVISALQRIREQREQQTINVMDKAKQYIGLHFTEELSLEETAEHVHLNPHYFSKVFKQQV 388 Query: 175 QTTFSQILLDARMQHAKNLIRV--EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 TF L R++ AK LI E ++ ++ + GY +YF F++ G +P Sbjct: 389 GATFIDYLTGLRIEKAKQLISSADELALKEVCFEVGYKDPNYFSRVFKRVTGLTPTEYRS 448 Query: 233 EYR 235 + + Sbjct: 449 QAK 451 >UniRef50_C7H973 Methylphosphotriester-DNA alkyltransferase n=2 Tax=Faecalibacterium prausnitzii RepID=C7H973_9FIRM Length = 271 Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 75/245 (30%), Gaps = 17/245 (6%) Query: 4 VCSVIFIHH-AFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYL 62 +C +I + +F + + + + I + Sbjct: 32 ICRIILVSGGSFTLVRGGESLLVNP-----GCVLLLGPGGGLLQQAGHIAPELLGCRFPA 86 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGL---------LNEMIAYLNSEERNHHNFSELLLFS 113 + + L T L L ++ + S E + + L Sbjct: 87 GVLPVLKNLMQRDFMPLFEPGAQTALYGPVQWSGRLRTLLGMMQSAESEPESPGMIYLTL 146 Query: 114 CLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ 173 L ++ + + L D+ Y+S L + ++ Sbjct: 147 ILHYVEQECRSEKQDIRPRNETVEQICAYLAANYQQKFSLTDVAARFYLSPYYLSRLFRR 206 Query: 174 -EQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 + + R++ A+ L+ + +++ +AEQ G+AS ++F FR+ G P + Sbjct: 207 VTGQSIVDYINGRRIEAAQRLLESTDLNISAVAEQTGFASAAHFRRVFRETMGTGPLQYR 266 Query: 232 KEYRC 236 K +R Sbjct: 267 KSHRG 271 >UniRef50_C6CX81 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CX81_PAESJ Length = 272 Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 74/226 (32%), Gaps = 7/226 (3%) Query: 11 HHAFNANILDKDYAFSDGEILMVDNAVRTHFE---PYERHFKEIGFTENTIKKYLQCTNI 67 I + + G+ + ++ + IGF + + L+ T + Sbjct: 49 RGTGTVQIGSSTFKLTSGQAFLAYPGKVISYQADAFDPWSYSWIGFRGEQVGEVLERTKL 108 Query: 68 QTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITL 127 + P N+ LL N + R E L S+ ++ + Sbjct: 109 TSEESVFPMDKQFMPNLYELLLESADHPKNHDLRLTSLLIEFLTVLIDSLPSSADAGVQ- 167 Query: 128 LTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDAR 186 + + + ++ + P ++ + L + L K+ Q LL+ R Sbjct: 168 -PRKQDTYIHRSLDFIHSHFSEPITVQQMAASLGLDRKYLSYLFKEAMGLPPQQYLLNYR 226 Query: 187 MQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 M A L+R E S+ ++A GY F F+K G PK Sbjct: 227 MDRAGELLRKGEYSIGEVARSVGYQDALLFSKMFKKLKGVPPKLYK 272 >UniRef50_UPI0001C34C27 transcriptional regulator, AraC family protein n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34C27 Length = 262 Score = 132 bits (333), Expect = 8e-30, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 77/239 (32%), Gaps = 26/239 (10%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFE---PYERHFKEIGFTENTIKKYL 62 VI AF A K+ G++ ++ T++E + IGF Sbjct: 43 YVIQGRGAFTA--EGKESPVRAGQMFVIRPFEVTYYEADRREPWEYIWIGF--------- 91 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK 122 T +P+P L+ + V + + + E L + AA Sbjct: 92 ------TCGIPLPECLLQEAVVNASRCGSIFSSMLEAENQTDGRELFLCGKAFQLLAA-- 143 Query: 123 GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQI 181 + G + R + + ++ L ++ S K+ + Q Sbjct: 144 --LEEKPAGGEDYVEQARTYLEANYMRDVSIGELAGKLNLNRSYFSTLFRKKTGKSPQQY 201 Query: 182 LLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 L D RM A L+ S K A GY F F+KHFG P+ S+ + Sbjct: 202 LTDYRMGRACQLMTEHGYSPGKAALSTGYPDIFSFSRMFKKHFGVFPREYSRRQTEKEE 260 >UniRef50_UPI0001C36471 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36471 Length = 287 Score = 132 bits (333), Expect = 8e-30, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 80/229 (34%), Gaps = 12/229 (5%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKYLQCT 65 I DK Y ++ ++ T + E + + F + + + Sbjct: 49 IIKGKGVFFADDKKYILKQRDMFLIRPGETTFYYADEVDPWEYAWVAFVGSDAAQITESC 108 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFI 125 V S ++++I ++ + + N + L + K I Sbjct: 109 GFAYSPVATYP----DSPELIESIDDIIHHMQTGDENDYYLLSRLYNIFYYL---SKPVI 161 Query: 126 TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLD 184 + + N++ ++ + D + + + L + K+E + L Sbjct: 162 NTQNTYKNEIVRRTVNLIRSSYFEKLTIQWLADQVRVDRTYLYRLFKEEVGICPKEYLTQ 221 Query: 185 ARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 R++ A ++ S+ +I+ CG+ TS F F+K+ G +P++ K Sbjct: 222 YRIRMATVMLSTTNQSIKEISYACGFTDTSLFSICFKKYLGFTPQQFRK 270 >UniRef50_C4L9U6 Transcriptional regulator, AraC family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L9U6_TOLAT Length = 284 Score = 132 bits (333), Expect = 8e-30, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 2/171 (1%) Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK 122 + V + L A + +L +I SE + + L+ Sbjct: 111 SQQQQNFIDVQKHSYPLSAKSPVHSMLQALIDLQASELQTPRSLQLQLMTVLTFTQELLH 170 Query: 123 GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ-TTFSQI 181 SV ++ V + + IS + L + +Q+ F+ Sbjct: 171 QPQPEKYQRAQSVFQRICIYVQENFHKAISRETVARRFNISPNHLSRLFRQQGHMNFADY 230 Query: 182 LLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 ++ R+ AK ++ R + +IA +CG+ T+YF F+K G +P Sbjct: 231 MVYVRIDRAKFMLRRYPMHLEEIAHRCGFRDTNYFCRVFKKKTGRTPTEYR 281 >UniRef50_B9DS09 AraC family regulatory protein n=18 Tax=Streptococcus RepID=B9DS09_STRU0 Length = 307 Score = 132 bits (333), Expect = 8e-30, Method: Composition-based stats. Identities = 34/258 (13%), Positives = 85/258 (32%), Gaps = 23/258 (8%) Query: 2 SLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHF-----EPYERHFKEIGFTEN 56 + VC +I + G+I+++ E + + Sbjct: 46 TYVC-----EGTARYHIDYDFFNSQAGDIILIRPNGMHSIHPIAKEKHITDNFQFHLDML 100 Query: 57 TIK-------KYLQCTNIQ-TVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSE 108 + YLQ V + + L ++ + E R+ + Sbjct: 101 GLSVVDQVSLHYLQPLQNSVNKFVHCIKPHMPGYDDIKACLFDIFSLAKEESRHFEILLK 160 Query: 109 LLLFSCLSIFAACKGFITLLTNGVLSVSGKVRN---IVNMKPAHPWKLKDICDCLYISES 165 L + + + + T+ + K+R +N + + + + S++ Sbjct: 161 SKLHEFIYLLYFHRYVVKKNTDDTYRKNEKIRQLIDYINNHYSDNLTIDFLSQFIGYSKT 220 Query: 166 LLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHF 223 KQ T+ ++ ++ R+ A L+ + +IA + G+ + S F F++++ Sbjct: 221 HFMTVFKQHTGTSCTEFVIQVRLSKACELLIHSTRPILEIANEIGFNNLSNFNRQFKRYY 280 Query: 224 GNSPKRVSKEYRCQSHTG 241 +P + K+Y + Sbjct: 281 NLTPSQYRKKYTKPKESR 298 >UniRef50_A9KN44 Transcriptional regulator, AraC family n=3 Tax=Clostridiales RepID=A9KN44_CLOPH Length = 278 Score = 132 bits (333), Expect = 8e-30, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 84/231 (36%), Gaps = 8/231 (3%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKYLQCT 65 + K + + G++ ++ + + + +GF+ + L+ T Sbjct: 50 IVSGKGYYETNHKTFPLTSGDVFLIYPDTQVTYYADALDPWEYYWVGFSGSDAGLILEAT 109 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFI 125 + + + + L ++ +E N + L + LS+F + Sbjct: 110 DFSNESPVISSC--SYGEKVKDQLYQIYEARGNEFANAVAMAGQLYIT-LSLFLSGASNH 166 Query: 126 TLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLD 184 + L K + ++P + D+ + IS S L ++ K + + L + Sbjct: 167 NKKHHQNLDYVQKGITYMESHFSYPITIDDVAAYVGISRSHLFREFKAHLGKSPKEYLSE 226 Query: 185 ARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 R++++ L++ + S+ IA GY + Y+ F+ G P + + Sbjct: 227 YRIKYSCTLLKNTDLSIGAIATSVGYDNGLYYSKVFQSVKGMPPSKYRNLH 277 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 87/222 (39%), Gaps = 8/222 (3%) Query: 16 ANILDKDYAFSDGEILMVDNAVRTHFEPYE---RHFKEIGFTENTIKKYLQCTNIQTVTV 72 D+ G ++ + E R+++ + + ++ V Sbjct: 42 IMANDRPLRLEAGAYGLLPDYQPLTMENIPKAPRNYQTVALPVPRQLFEDAYARMGSIAV 101 Query: 73 PVPAKFLRASNVPTG--LLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTN 130 P AS++P +L + + R ++ L ++ FA C + Sbjct: 102 PSRPLPASASSLPEEAAVLFDYCCQPGNLARLPGAIAKARLMELVTWFALCGAVLG--EG 159 Query: 131 GVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHA 190 + ++R ++ PA W L +SE+ L+++L E T FS+IL D RM A Sbjct: 160 QSPRLEDRLRQMIESDPAFDWTLAHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRA 219 Query: 191 KNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 LI + ++A + GY S S F F++ FG SP+ V Sbjct: 220 LGLIHTTTLPMAQVALEVGYDSPSQFSARFKERFGVSPRHVR 261 >UniRef50_C0ET05 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0ET05_9FIRM Length = 355 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 70/212 (33%), Gaps = 8/212 (3%) Query: 35 NAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIA 94 A Y N I K LQ V + + + + I Sbjct: 149 KASVDILREYIDQLYLEEHDVNIISKRLQEVAKAVVRISEELGITDTNELVVQMEKLKIK 208 Query: 95 YLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLK 154 YL N H+ ++ +F L G V + + L+ Sbjct: 209 YLLYN--NKHDAYNEIIKMVDILFDKMNIKGKLSEGG----MKAVIDYIERNLKKGISLE 262 Query: 155 DICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYAST 212 D+ + + IS L K K+E F + D +M AK ++ + V IA Y Sbjct: 263 DVANHVNISTYYLSKIFKKEMGVNFITYVTDRKMDLAKEMLVNTDIPVLNIALDLAYNEA 322 Query: 213 SYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNT 244 +YF AF+K G +P ++YR + T Sbjct: 323 NYFSKAFKKKTGLTPSEYREKYRNRKEEENET 354 >UniRef50_B8FQG3 Transcriptional regulator, AraC family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQG3_DESHD Length = 273 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 12/231 (5%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTN 66 VI + K Y G ++ +R E E + Y + Sbjct: 46 VIPFSGSACFTFDGKPYVIEPGMVVHAGPGMRLSKEVIGDREWEYA-----VIHYHIPQH 100 Query: 67 IQTVTVPVPAKFLRASNV---PTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKG 123 + F A L+ +++ + +++L S L Sbjct: 101 ERDEYPLFHKDFSLAHGRSAKVPHLVRQILDIQSIPGAAAKFQTKVLFLSLLQEIFTAAC 160 Query: 124 FITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQIL 182 N + + + + A ++ + D + K+ + L Sbjct: 161 GQPGQENSK--LIEEAMGYIRLNYADELTVQKVADEFSVERRQFSYLFKRHTGMSPIHYL 218 Query: 183 LDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 ++ R+ AK L+ SV ++AE GY + YF AF+K+ G SP + Sbjct: 219 IECRISKAKELLGSPGCSVKQVAEWVGYTDSLYFSKAFKKYTGVSPSEYRE 269 >UniRef50_D1PIK0 Putative pectin acetylesterase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIK0_9FIRM Length = 615 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 18 ILDKDYAFSDGEILMVDN-AVRTHFE----PYERHFKEIGFTENTIKKYLQCTNIQTVTV 72 I D Y E ++ + FE P+ R + L+ + + Sbjct: 50 IEDSQYILQPDEFIIFPPFVMHHSFEENDVPFRRLLLYFNPEVIRSPQILRTLSERARVY 109 Query: 73 PVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGV 132 +P RA + P L + I + + L+ + L++ Sbjct: 110 KLP----RAQSAPIYNLMKDILQEQERDDLYSRELITLMVNALALQLVRNSDEAARPEQR 165 Query: 133 LSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTT-FSQILLDARMQHAK 191 V+ + N ++ L+ + + Y+S+ L ++ K+ ++ Q + + R+ HA+ Sbjct: 166 NRVTD-IINYLHEHFTEDITLEQLANHFYVSQYHLCREFKRYTSSTIVQYIHNLRVLHAQ 224 Query: 192 NLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSH 239 L++ + S+ +I+++ G+++ ++F ++ G SP + + Y + Sbjct: 225 RLLQESDYSITEISKRVGFSNVTHFNRVYKSVTGMSPSQNKQAYLKRGK 273 >UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU19_9GAMM Length = 335 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 56/119 (47%) Query: 116 SIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQ 175 ++ + +VR + + + L+++ L++S LK++LK+ Sbjct: 212 AVLFCERELEDYRQREEADWVRQVRRAMVKQEGGYYSLEEVAAVLHLSVRTLKRRLKEHG 271 Query: 176 TTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 + +IL +AR++ A L++ +V +A Q GY + F AFR+ G SP +++ Sbjct: 272 ANYHRILKEARLERAVALLKEGETVQTVAFQLGYQDPANFTRAFRRWTGCSPSDYRQQW 330 >UniRef50_C5RL17 Transcriptional regulator, AraC family n=2 Tax=Clostridium cellulovorans 743B RepID=C5RL17_CLOCL Length = 282 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 77/246 (31%), Gaps = 22/246 (8%) Query: 1 MSLVCSVIFIHHAFN----ANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGF 53 M + IH+ F+ I Y G+ ++ ++ + + F Sbjct: 36 MPNLKERFLIHYIFSGKGSFEINGYTYNLESGQGFLISPGDIATYKADDKDPWTYAWVEF 95 Query: 54 TENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFS 113 +K+L + + T S LL Y+ + N + L+L S Sbjct: 96 NGRLSEKFLHQIGLSSKTPVF-------SCKKKDLLEASFQYIFDACKKSRNNNLLILSS 148 Query: 114 CLSIFAACKGFITLLTNGVLS------VSGKVRNIVNMKPAHPWKLKDICDCLYISESLL 167 A + + + + ++ L ++ + + Sbjct: 149 LYHFLAMIHEASAPEQTEKNTEKLKDYYIHQAMIFIEKNYYRNLCISEMAKYLSLNRNYM 208 Query: 168 KKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGN 225 K+ T L++ RM AK L++ ++ +I+ GY F F+K FG Sbjct: 209 STLFKESVGITPQAYLINYRMDKAKELMKNSSLTIGEISSLVGYNDPLMFSRMFKKLFGI 268 Query: 226 SPKRVS 231 PK Sbjct: 269 PPKNYR 274 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 91/241 (37%), Gaps = 20/241 (8%) Query: 15 NANILDKDYAFSDGEILMVDNAVRTHFEPY------ERHFKEIGFTENTIKKYLQCTNIQ 68 + +I + +V + + E +I + + + Sbjct: 33 DVHINGHAIELKNNSTFVVPKFSHISCSINQLNNQENIELQLLMIDEESITEAFKYISAL 92 Query: 69 TVTVP----------VPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 +P + N L N+++ + S+ L+F +++ Sbjct: 93 KQPTFPTASCSPVYTIPTPAIVDQNFV--LFNKLLPSICGSSMEKTLLSQCLVFILMALN 150 Query: 119 AACKGFITLLTNGVLSVSGK-VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTT 177 A + + + ++ P W + D+ L+ ++S L++ L +E + Sbjct: 151 EAGIDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVS 210 Query: 178 FSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 FSQ+LLD RM A N + S+++I+ + G+ S +YF AF++ +G +P + R Sbjct: 211 FSQLLLDVRMGLALNYLTFSNYSISQISNRSGFGSAAYFCDAFKRKYGITPSQFRTTSRQ 270 Query: 237 Q 237 + Sbjct: 271 E 271 >UniRef50_C6QRS7 Two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QRS7_9BACI Length = 269 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 4/118 (3%) Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNL 193 V N + + L+++ + ++IS L K K+E + F + + +MQ AK L Sbjct: 149 VIQSALNYIEENYQNGITLEEVAEHVHISPFYLSKLFKKELKMNFVSYVTEKKMQKAKEL 208 Query: 194 IR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNA 250 + + V IA + Y +YF F+K G +P K R + N++ Sbjct: 209 LENTDLPVIHIALELNYQEPNYFSKVFKKVVGITPSEYRK--RSKKGLSKKKHNSVLN 264 >UniRef50_C9L911 Putative transcriptional regulator n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L911_RUMHA Length = 268 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 79/231 (34%), Gaps = 10/231 (4%) Query: 8 IFIHHAF-NANILDKDYAFSDGEILMVDNAVRTHF--EPYERHFKEIGFTENTIKKYLQC 64 + F N +I + Y +GE ++ + + E E + F + Sbjct: 40 LQTEKGFGNISIQGRHYTLKEGEGFLIAPHINHSYYGETNEWNTCFFTFAGTLESNIGKI 99 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 + V + ++ + + + + + + LL+F + Sbjct: 100 LGGRPVIFTSKEQGVQIAQIIENTIKKYEHPPLDAKALSVDCYRLLMFFADGVSTENFIH 159 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 L V + A ++++ ++I+ L + ++ + + L Sbjct: 160 EPLY----QRYVAPVLKEIESNYAEELTIQELSHQVFITPQYLTRLFQRFLGCSAYEYLT 215 Query: 184 DARMQHAKNLIRV--EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 RM AK L+ V +IA Q G+ +S+FI F+K G +P K Sbjct: 216 TWRMNKAKELLLTFPHAEVQEIARQSGFTDSSHFIAMFKKTTGMTPLEFRK 266 >UniRef50_UPI000178A7F2 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178A7F2 Length = 544 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 6/193 (3%) Query: 50 EIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMI---AYLNSEERNHHNF 106 + I +Q + V LR + L EM L++E Sbjct: 352 ITHIFDELIGASCTIQEVQIYLLEVVTAILRTAKESGIELEEMFGAGYQLHAEIFKFSGL 411 Query: 107 SELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHP-WKLKDICDCLYISES 165 E + A K + + + K P L+ +C L+IS Sbjct: 412 QEAKAWLQDVSLAIRKQISSSRQHAYKDIVEKALQYTREHYGDPDISLQKLCMHLHISTG 471 Query: 166 LLKKKLKQE-QTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHF 223 K+E + T+ Q L+ RM+ AK L+R + +IAE+ G+A +YF ++F+K Sbjct: 472 YFSGVFKKELKMTYVQYLMQLRMETAKELLRSTDLKAFEIAERVGFADPNYFSFSFKKQV 531 Query: 224 GNSPKRVSKEYRC 236 G SPK + R Sbjct: 532 GVSPKEYRAQARG 544 >UniRef50_D1N277 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N277_9BACT Length = 315 Score = 131 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 11/226 (4%) Query: 19 LDKDYAFSDGEILMVDNAVRTHFEPYERH-FKEIGFTENTIKKYLQCTN--IQTVTVPVP 75 + G + ++ +E E F ++ Y + + + P Sbjct: 70 DSQKLPLRPGSVFLLHPGESHAYEYSEPLTLMNFMFDSQILRPYRKSLSGLAGYPLLFCP 129 Query: 76 AKFLRASNVPTGLLNEM------IAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLT 129 A+ R V + L E+ +A + + + L + K + Sbjct: 130 AEERRELCVDSATLAELDILLHAMAMESRQRSAGAELLLISHLLNLLVLVLRKSCSYVER 189 Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQ 188 S G + L + +SES +K ++E +T+ Q LL+ R++ Sbjct: 190 ERFNSDIGIAVAFMRRNYQEEISLPKLARLANLSESSFFRKFREEMKTSPMQWLLNLRIR 249 Query: 189 HAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 A LIR + ++ +IA G++ + YF FR+ G SPK + Sbjct: 250 KAMEFLIRSDMNIGEIAAATGFSDSLYFSRQFRRQVGVSPKNYRSQ 295 >UniRef50_UPI0001788F54 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788F54 Length = 523 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 2/116 (1%) Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTF 178 + I V ++ + A P L + + + S L F Sbjct: 400 EAERAIGETNTSVNPNMDRLLEYIQDHYADPITLTGVARQFHFNASYLSSYFASYNGEGF 459 Query: 179 SQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 S+ L R++ A L+ E ++++I+ GY+ SYF F+K G SP + ++ Sbjct: 460 SEYLNKIRLEKAMELLLTTELTISEISASVGYSDQSYFTKVFKKQTGISPSQFRRQ 515 >UniRef50_A4BEX9 AraC-type DNA-binding domain-containing protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BEX9_9GAMM Length = 323 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 83/209 (39%), Gaps = 4/209 (1%) Query: 27 DGEILMVDNAVRTHFEPYERH-FKEIGFTENTIKKYLQCT-NIQTVTVPVPAKFLRASNV 84 G + ++ + +E E H F + F + IK++ + N+ V +P Sbjct: 112 AGTLCLLPQGEESTWEISETHRFAHLYFPDRAIKRFAERERNMDPQRVQLPDLTFAQHES 171 Query: 85 PTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSV-SGKVRNIV 143 L + ++ L ++ CL A + G+ +V +++ + Sbjct: 172 LEALTRHLFLTAANDNPLQVEQKLLPIYDCLISIALDQPVTQPWRGGLSTVHQRRLKEYL 231 Query: 144 NMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLIRVEGSVNK 202 L D+ + +SE L++ K + ++ + R+ HA++L+ N Sbjct: 232 AEHFEQTLTLSDLAGLVDLSEYHLQRAFKTSLGCSPAEYQRELRLDHARHLLSSGEQANS 291 Query: 203 IAEQCGYASTSYFIYAFRKHFGNSPKRVS 231 +A CG+A+ ++F F++H G +P Sbjct: 292 VAIACGFANPAHFSRIFKQHLGVTPSEYR 320 >UniRef50_Q1QUA4 Transcriptional regulator, AraC family n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QUA4_CHRSD Length = 303 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 75/238 (31%), Gaps = 17/238 (7%) Query: 12 HAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFK--------EIGFTENTIKKYL- 62 N + D F G +++V V + + + F ++ + Sbjct: 55 SEGNYFVGDYIGRFGPGNLVLVGPNVPHAWLSDPDDSRSVIKGRDVVLQFKGEWLEHMMA 114 Query: 63 --QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLF----SCLS 116 N + + + + E++ + ++ + L + C Sbjct: 115 LCPELNCLSTLIEDSRQGVAFQGEEATRCGELLITMGEQDHAGRLLTMLTILRGLSQCDY 174 Query: 117 IFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQ 175 + + + T + + ++ ++ + +S S + K Sbjct: 175 ATLSSREYGLEATGVSSAQVDAILRYIHDHFHEELRMSALAARNGMSPSSFSRFFKHATG 234 Query: 176 TTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 TF L R+ HA L+ S+ I Q GY + S F FR+ G +P++ + Sbjct: 235 DTFVAFLRRIRIGHACQLLLEGRQSIADICFQVGYNNLSNFNRHFRELKGMTPRQYQQ 292 >UniRef50_C9BAM1 Helix-turn-helix domain-containing protein n=12 Tax=Enterococcus faecium RepID=C9BAM1_ENTFC Length = 483 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 9/188 (4%) Query: 51 IGFTENTIKKYLQCTNIQTVTVP--VPAKFLRASNVPTGLLN-EMIAYLNSEERNHHNFS 107 + + I + + + + + FL + L++ E YL E+ H + Sbjct: 296 LEVAQKMITDFFEQFQLAAMMPEDIRYSSFLLFMEIQRELIDLEDEEYLQGIEKIHQAKT 355 Query: 108 ELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLL 167 L L F ++ KV I++ P LK++ + L+++ L Sbjct: 356 VQELQQLLLSFIKKHQRQKKYSDN----VEKVIVILHQHYQEPLTLKEVSENLHLNVMYL 411 Query: 168 KKKLKQEQT-TFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGN 225 + K+E +FS L RM+ AK L+ ++N+IA + GY +T+YF F+K G Sbjct: 412 GQLFKKETKKSFSAYLNHLRMEKAKQLLLHSNQNINEIASEIGYNNTTYFSKLFKKIVGR 471 Query: 226 SPKRVSKE 233 SPK + Sbjct: 472 SPKEYREN 479 >UniRef50_A8SQN1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A8SQN1_9FIRM Length = 294 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 85/249 (34%), Gaps = 20/249 (8%) Query: 6 SVIFIHHA-FNANILDKDYAFSDGEILMVDNAVRTHFEPYER---HFKEIGFTENTIKK- 60 +I+I N + + +G+I+++ +E ++ I F+ + + Sbjct: 45 EIIYIKKGKGNVTVDFTTHYVEEGDIIIILPGHIHGISQHEGYSMEYENILFSVDMFRSK 104 Query: 61 ---------YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLL 111 +L + K + LN + + + +H + Sbjct: 105 NHDSLDSEFFLPLLAGDVDIKSIYDKDDPLYPQLSSCLNRVDKLCSETPKGYHLALKGCY 164 Query: 112 FSCLSIF----AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLL 167 F + + L + + + ++ + DI SES Sbjct: 165 FEFFYVLFTNSTVRDEADRKNRSRDLERTKLILSYIDENYKEAISITDIASYCGFSESHF 224 Query: 168 KKKLKQE-QTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGN 225 + K +F L D R+ A L+ + SV +AE CG+ + SYF F+K +G Sbjct: 225 MRFFKNTMGVSFVSYLNDFRLNVAARLLSTNDDSVLSVAENCGFFNLSYFNRMFKKKYGV 284 Query: 226 SPKRVSKEY 234 +P R + + Sbjct: 285 TPSRYRETH 293 >UniRef50_C9A7I8 Transcriptional regulator n=4 Tax=Enterococcus RepID=C9A7I8_ENTCA Length = 268 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 67/226 (29%), Gaps = 6/226 (2%) Query: 12 HAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNIQTVT 71 + + E +++ + P Q Sbjct: 45 GEGRITFGQESFILRPNEGILIFPFTPHRYYPLTNWKTSFA---TFQGPLAAEVLKQYTN 101 Query: 72 VPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNG 131 P + +N+ I + S L+I G T Sbjct: 102 QPYILAEESETFSYVTWINQRIKEDQQISWDPLRASSECYRFLLAIMQERSGNPTEKHPL 161 Query: 132 VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHA 190 V + +K++ +Y+S L + ++ + +Q LL+ RM A Sbjct: 162 FQQYLVPVIQEIETNYDQAITIKELAGLVYVSPQYLSRLFQRFLGQSTAQYLLNYRMTRA 221 Query: 191 KNLI--RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 K L+ + + + + A G+ S+F F+K G +P + + Y Sbjct: 222 KELLVAQPDLPIQQAAFAVGFQDASHFTALFKKRVGLTPLKFRQLY 267 >UniRef50_UPI00017894C2 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017894C2 Length = 310 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 27/255 (10%) Query: 6 SVIFIHHAFNAN-ILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEI---GFTENTIKKY 61 + ++ + + + Y G+I ++ EI F + + + Sbjct: 53 QIWYVAKGAFLHTVQQQVYEIRKGDIFVIPPFTLHSVSISPDEDIEIYGCEFMPSFVNER 112 Query: 62 LQC--TNIQTVTVPVPAKFLRASN--------------VPTGLLNEMIAYLNSEERNHHN 105 Q T+ V FLR +L +M+ Sbjct: 113 FQEQPTDHAFFDVAFLEYFLRKEMNAQSQITLDSVTDVTVRNVLKDMLIEYERRTPFFQI 172 Query: 106 FSELLLFSCLSIFAACKGFITLL-----TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCL 160 + L LSI A L + + +V + ++ L D+C Sbjct: 173 SLKAKLLVLLSILARQVNGELLREGFEKSEKYREIMTRVVDHIHNHYQEDMNLNDLCSLS 232 Query: 161 YISESLLKKKLKQ-EQTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYA 218 +S S K+ TF++ L D R+ A +++ E SV + G+ SYF Sbjct: 233 NLSRSTFCILFKEWTGKTFNRYLTDLRILQAMMMLKQPELSVTDVCYSTGFNELSYFCRI 292 Query: 219 FRKHFGNSPKRVSKE 233 F+K+ G SP K+ Sbjct: 293 FKKYTGISPTDFRKQ 307 >UniRef50_UPI0001788255 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788255 Length = 292 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 72/246 (29%), Gaps = 18/246 (7%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTH-----FEPYERHFKEIGFTENTIKK 60 + I + GE + +D E Sbjct: 46 IFYVMEGEVLFQIDSEYIPVRAGEAIFIDGGDLHTGHAQGNEGCSFCAMVFDVGMLASSS 105 Query: 61 Y-LQCTNIQTVTVPVPAKFLR-----ASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSC 114 Y L + A F R + EM+ + + + LF Sbjct: 106 YDLVQEGMIVPFQERRAAFPRRMTSGTDERLLEHIKEMMLLSKHKPAGYEAAIKGHLFLM 165 Query: 115 LSIFAACKGFITLLTNGVLSVSG-----KVRNIVNMKPAHPWKLKDICDCLYISESLLKK 169 L A+ + ++ KV + P +L ++ D + +SE + Sbjct: 166 LFQAASSGRLANRSRSEAADMTRTERLKKVILYIQSHYHRPIRLSELADLIPMSEGQFCR 225 Query: 170 KLKQ-EQTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 K T + R++ A L+R + ++ IA G+ SYF+ FRK +P Sbjct: 226 FFKSMTGQTPVDYMNSYRVRQAAELLRSPDNKISDIALDVGFGHISYFVRVFRKIMNCTP 285 Query: 228 KRVSKE 233 K+ Sbjct: 286 SEYRKK 291 >UniRef50_UPI00016C01F8 transcriptional regulator n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01F8 Length = 265 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 84/230 (36%), Gaps = 10/230 (4%) Query: 8 IFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNI 67 + + + +Y G+I+ V + + + + Sbjct: 36 LILEGEGSVTCNKTEYYPEVGDIMFVPKGSLNSYATNKDK-----PYKKYWCHFDADILS 90 Query: 68 QTVTVPVPAKFLRAS---NVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGF 124 + V + L + + L +++ Y S+ +++ LL + + + F Sbjct: 91 TDIAVYLSFPLLVKNANKKISYKLFAKLVKYHESKNPIDAIYAKALLLRIIHFYFSECEF 150 Query: 125 ITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILL 183 + + +V GK+ ++ L ++ +++ + L T + + Sbjct: 151 VKINDVPNQTVMGKLVKYIDENLERKITLTELAKFAHLNANYLCTLFSSTFGQTPIEYIT 210 Query: 184 DARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 + +++ AK L+R ++ +I+ G++S YF F+K G SP + + Sbjct: 211 NKKIEKAKILLRTTTDTIEEISNTLGFSSPFYFSAVFKKRIGYSPSQFRQ 260 >UniRef50_A1HM14 Two component transcriptional regulator, AraC family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM14_9FIRM Length = 247 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 115 LSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE 174 L LS +V + P L D ++++ S L + KQE Sbjct: 120 LQRRRREAAAAAGPEEQALSPIQQVLRYMAETPLGDINLTDAARRVHMNPSYLSQLFKQE 179 Query: 175 -QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 Q F + D +M+ AK L+ +++IA++ GYA +YF F+KH SP K Sbjct: 180 MQVCFVDYVTDLKMKEAKRLLATTTLRISEIADRLGYADLAYFSNIFKKHTACSPSEYRK 239 Query: 233 EYRCQSHTG 241 + + ++ G Sbjct: 240 Q-QARTGRG 247 >UniRef50_C0YPK7 AraC-type DNA-binding domain-containing protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YPK7_9FLAO Length = 307 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 76/229 (33%), Gaps = 14/229 (6%) Query: 17 NILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTNI--------Q 68 + + GE +++D + + I+ L N Sbjct: 79 YYPGESILVAPGETMVIDFPEADET---PTQCISLSLNPDFIEDSLNYLNYHLPKVDEAS 135 Query: 69 TVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLL 128 + + FL + N ++ + ++ L L + + Sbjct: 136 QWNIQLDEYFLFNNKALASATNNIMRIAMDDNSQKDIMADFALKELLIRLMQTQARSMVE 195 Query: 129 TN--GVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDA 185 N S G V + + + I Y+S+S K K E T+ + +L Sbjct: 196 KNIVKNKSRIGFVVDYIKTNLHQKLSIDSIAKLAYVSKSNFFKMFKDELGTSPNDFILQE 255 Query: 186 RMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 R+ AK L+ + S+ + A Q G++ T+YF F++ G +PK Sbjct: 256 RINRAKELLASQTSIKETAFQTGFSDTNYFTRVFKQLEGVTPKSYQDRM 304 >UniRef50_C5RE92 Transcriptional regulator, AraC family n=3 Tax=Clostridiales RepID=C5RE92_CLOCL Length = 286 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 91/243 (37%), Gaps = 12/243 (4%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKK----- 60 + I F + + G++ + + P + ++ I F ++ K Sbjct: 43 IIRIISGEFLLTLNGNELKLKTGDLAFIHAGILHGGTPIDCVYECIVFDMKSLLKVNSTC 102 Query: 61 YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 Q +I + + + + + N + + ++ + ++ L+ L I Sbjct: 103 SKQIQDIIHNSKVINSLLPTDNLELQTVCNYLFESMAQKKLGYELVTQGSLYHLLGIILE 162 Query: 121 CKGFITLLT-----NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QE 174 + + T ++ V +++ + P L+D+ ++ + + Sbjct: 163 HRLYSTPKEATSKNQQRINQFKNVLSLIEQQYPDPLTLEDLSKAAGMTPKYFCRFFRGMT 222 Query: 175 QTTFSQILLDARMQHAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 Q + L R++ + L+ S+ +IA CG+ SYFI F+K+ G +PK+ K+ Sbjct: 223 QRSPIDYLNYYRIESSCEQLVSTNESITEIALNCGFNDISYFIKTFKKYKGVTPKQYLKD 282 Query: 234 YRC 236 Y Sbjct: 283 YHA 285 >UniRef50_C6LL88 Transcriptional regulator, AraC family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LL88_9FIRM Length = 303 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 40/247 (16%), Positives = 82/247 (33%), Gaps = 21/247 (8%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEI-GFTENTIKKYLQC 64 ++ + + + K Y +G+IL+V++ V E + I F + + Sbjct: 41 ILMPVTEIYGVIVDQKKYVLQEGDILIVNSGVPHALEAPPTGERIILQFDPALLYSLKEM 100 Query: 65 TNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCL--------- 115 + + PV L+ + + E F+ L+++ L Sbjct: 101 ETLLLLFPPVFYITPENEPDLYPLVKAKMEEIIREYDGQQAFAGALVYASLIELFAGVGR 160 Query: 116 ---------SIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESL 166 + + V+ K N +N L++ + S+ Sbjct: 161 ITRERNIEGTALHDMRRSKQDRQWEYQEVALKACNYINQHYQEKLTLEETAKMVGFSKYH 220 Query: 167 LKKKLKQE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFG 224 + K+ TF + L R++ A+ L+ E S+ +A G++S S F F+ Sbjct: 221 FTRVFKKYMNMTFYEYLNKKRVKCAEGLLYSTEMSITDVAMNSGFSSMSSFDRTFKALNK 280 Query: 225 NSPKRVS 231 SP Sbjct: 281 CSPSEFR 287 >UniRef50_C6IYL2 Two component transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IYL2_9BACL Length = 530 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 2/110 (1%) Query: 129 TNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK-QEQTTFSQILLDARM 187 T S+ ++ ++ + + L I + + + S L K + +F Q L D RM Sbjct: 420 TREEPSIVEAMKEMIELNYMNDLNLSQIAEQYHYNLSYLSDLFKTKTGKSFLQYLTDVRM 479 Query: 188 QHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 A L+ S++ IAE G+++ SYF F+K FG SP ++ + Sbjct: 480 NKAVQLLDETPLSLSDIAELTGFSNASYFSTKFKKVFGISPSEYRQKDKN 529 >UniRef50_B2JSH9 Transcriptional regulator, AraC family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JSH9_BURP8 Length = 354 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 92/241 (38%), Gaps = 14/241 (5%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTN 66 ++ + + G+I++ D A E + + I+ + Sbjct: 117 LLLESGSGKMQQAGRKLVMGVGDIMLFDGARPFRHEVIPDSIILVRMPRSLIRSHFSAVE 176 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 + LL+ ++ + + + L + + I Sbjct: 177 ------KFVNMKIADGKSIQPLLSGLMREAYALTEETPLLARIHLANAFINAISVALEIQ 230 Query: 127 LLTNGVLSVSGKVR-----NIVNMKPAHP-WKLKDICDCLYISESLLKKKLKQEQTTFSQ 180 + S G+V +I++ + + +I L++S+ L + +E TT SQ Sbjct: 231 SASEVNESYEGRVLFEKALSIIDARIDDQALNVAEIASALHVSDRTLSRIFAREGTTPSQ 290 Query: 181 ILLDARMQHAKNLIRVE--GSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 L + R+Q + L++ V +IA QCG++ S+F +F++ FG++P ++ K+ + + Sbjct: 291 TLWNRRLQKSYRLLQENVALQVTQIAFQCGFSDLSHFSRSFKRVFGSAPSQILKQRKDEH 350 Query: 239 H 239 Sbjct: 351 G 351 >UniRef50_A6TKQ3 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ3_ALKMQ Length = 282 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 83/240 (34%), Gaps = 13/240 (5%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHF-----EPYERHFKEIGFTENTIKK 60 + + I D+ + G +++++ + + R Sbjct: 39 IYYLLSGERHYFIKDRIFHVKSGTLVLINRQDVHRTTDADTQDHVRVLLNFSKDYLLSSP 98 Query: 61 Y-LQCTNIQTVTVPVPAKFLRASNVPTG-LLNEMIAYLNSEERNHHNFSELLLFSCL--- 115 Y + + + FL A LL++MI + + + LL L Sbjct: 99 YVIALLDGLFMNNNYVIPFLSAEQQYVEVLLDKMIHEIEHQSTGFQVALQALLMDLLVYT 158 Query: 116 -SIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ- 173 + + + + V ++ +N P L + ++S+ L + KQ Sbjct: 159 SRYIESNRHDVLAPPSQVHEKISQIVQYINTNYQTPLTLSSVAQNFFVSQYYLSRTFKQA 218 Query: 174 EQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 TF + + + R++ A+ L+R V I+E G+ S S+F F++ SP + Sbjct: 219 TGFTFVEYINNIRIREAQRLLRETNHKVIDISEAVGFGSISHFGRVFKEVTRFSPLNYRR 278 >UniRef50_C6CVZ4 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVZ4_PAESJ Length = 288 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 74/232 (31%), Gaps = 15/232 (6%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRTHF------EPYERHFKEIGFTENTIKKYLQ 63 ++ + + + + G + + V+ + + FT + + ++ Sbjct: 55 LNGSVTLSSMGETVILPKGSMFCLFPDVKHSYWITQYDSASPLKMHWLAFTGSQAEMLVR 114 Query: 64 CTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKG 123 + + ++ T L N++ A + + + L +F Sbjct: 115 RIGLTEHKPYLRSRLT------TELANQLQACMERMKNWQKDGDLQLQMMLYQLFEMLSR 168 Query: 124 FITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQIL 182 + + + A + D+ + + S L + KQ + + L Sbjct: 169 PLPEASE-EKDWLKACLQYMQTHYAEGISVTDLAEWSGMHRSHLSSRFKQSFGISPREYL 227 Query: 183 LDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233 + RM+ A +++ S+ I+ GY F AF + G SP + Sbjct: 228 IMLRMERAVEMLQSRTLSITDISLSLGYTDLYTFSRAFSTYTGMSPSNYRSK 279 >UniRef50_C4ZF62 Two-component sensor response regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZF62_EUBR3 Length = 288 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 15/231 (6%) Query: 15 NANILDKDYAFSDGEILMVDNAVRTHFEP--------YERHFKEIGFTENTIKKYLQCTN 66 N G+ +++ V + + FT + + + Sbjct: 61 NILSNSHTIELQKGQGILIAPNVPHSYHNKNISSGNSLPWKTEFATFTGTMAATFREMFD 120 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 + + K + + +N+ + + S L + Sbjct: 121 EKEYWLIDENKGME----VSEAINKAVEDFKERSSDTQMLSLDCYGIMLLLSDQSNHTHD 176 Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDA 185 + V + + K++ D +++S+ L + + + + L + Sbjct: 177 NDDQSYVRFIKPVIDAIEESYIDDISAKELADSVFVSQQYLSRVFTEFMNCSVYEYLTNY 236 Query: 186 RMQHAKNLI--RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 R+ AK L+ V IA GY+ S+FI F+K G +P + K + Sbjct: 237 RINKAKELLLINSRRKVQDIASDVGYSDASHFIVMFKKLTGMTPTQFRKLH 287 >UniRef50_UPI0001C36B1C two component transcriptional regulator, AraC family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36B1C Length = 505 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 76/195 (38%), Gaps = 18/195 (9%) Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK---- 122 ++ + + + + L V +N + + ++ + + + L I+A CK Sbjct: 311 LKHLELSIQRQRLNYDTVIRLFINSYMQIDMLIKEHYPEAANRVTGANLVIYAICKCRTL 370 Query: 123 -GFITLLTN------------GVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKK 169 + LT ++ K+ + P K++ + + + S L K Sbjct: 371 REIVNFLTEHITGIIRMVHEVRSDNIIEKLCGYIGKNYRQPLKIETLAEVFGYNGSYLGK 430 Query: 170 KLKQE-QTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPK 228 KQE +F L R++ AK L+ + + +A +CG+ S YF F+K+ G SP+ Sbjct: 431 LFKQETGESFHSYLDRVRIEKAKKLLETDARIYSVASECGFQSNEYFSNKFKKYVGVSPQ 490 Query: 229 RVSKEYRCQSHTGMN 243 K + G Sbjct: 491 AYRKARAEEQGGGRQ 505 >UniRef50_C3RLG7 Transcriptional regulator n=2 Tax=Bacteria RepID=C3RLG7_9MOLU Length = 280 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 84/236 (35%), Gaps = 12/236 (5%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTIKKYLQ 63 I ++ + + ++++ + + I + + Sbjct: 46 FYVTKGCGGFKIGADEFNVQENDFVIINPNTMHTEVSRDRNPLEYIVIAIDGISFE---- 101 Query: 64 CTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKG 123 ++ + + N LN M+ ++ + + + L+ L Sbjct: 102 -IPEDSLKDYISCNYANYKNEILFYLNLMVKESQAKNELYDDMCQQLMQVLLINILRLNR 160 Query: 124 FITLLTNGVLSVSG--KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQ 180 LT G ++N ++ L + + ++++ L + K + + Sbjct: 161 INVSLTQGKTIRKEIFMIKNYIDRNYHKEITLDTLAEKTHMNKFYLAHEFKNDVGVSPIS 220 Query: 181 ILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 LL R+ +K L+R + S+++I+ G++S SYF AF+K SP + K ++ Sbjct: 221 YLLQRRIYESKYLLRDTDLSISQISTILGFSSLSYFAQAFKKSTNFSPLQYRKNHQ 276 >UniRef50_A5ZHU6 Putative uncharacterized protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZHU6_9BACE Length = 284 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 88/245 (35%), Gaps = 15/245 (6%) Query: 6 SVIFIHHAFNANILDKDYA-FSDGEILMVDNAVRTHFEPYER--------HFKEIGFTEN 56 + ++ H + + F+ G++ ++ ++ H+E + + F+ + Sbjct: 40 ELYYVVHGYGKRMAGDTLQPFAAGDVALIPPSMLHHWEYSPDSADDDGYVRYLMVAFSHS 99 Query: 57 TIKK---YLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLF- 112 +++ + + P L+ + + +++ +N + L Sbjct: 100 LVERCMAVFPELRNRLTGITFPTNALKFGTGSSQTIRRILSQMNDMDELGRLCEMFRLLP 159 Query: 113 SCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 + + + + ++ V H L DI + ++ S K Sbjct: 160 AIFTSSDHTFAGKPMNIERDVRRMQQICVYVMTHYIHTISLDDIAAEVGMNRSAFCSYFK 219 Query: 173 Q-EQTTFSQILLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 + + TFSQ + R+ A L++ + V++I G+ +F+ F+ G SP + Sbjct: 220 RCKGMTFSQYVTQYRLNTACELLKHSQKQVSEICFTVGFNDLPHFVRVFKNTLGMSPSKY 279 Query: 231 SKEYR 235 + ++ Sbjct: 280 RRRFQ 284 >UniRef50_B5CQG2 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQG2_9FIRM Length = 277 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 82/230 (35%), Gaps = 3/230 (1%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKEIGFTENTIKKYLQCTN 66 + + + + D+ + + ++++++ + + E ++ Sbjct: 45 FFVLSGSGSFLVEDETFPIAKHDLIVINPNITHTEKSSLEDPLEYIVLGVDGLNFVIDDA 104 Query: 67 IQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFIT 126 + + R +L E E+ N +L+ LS +A+ I Sbjct: 105 NEYLLFHSDEMKDRLDFYFRTILEETENSQKDYEKVCQNLLNILVVH-LSRYASSSVEIF 163 Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDA 185 + + ++ L + + I++ + + L Sbjct: 164 PFHKMESRECSRAKRYIDSSFRENITLDKLAEIAQINKYYFSHTFTETYGISPMNYLTQK 223 Query: 186 RMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 R+ ++ L+ + S+ +IA+QCG++S+SYF FRK G +P K++ Sbjct: 224 RIFTSQELLTSTDMSLAQIAQQCGFSSSSYFTQCFRKSCGMTPTAYRKQF 273 >UniRef50_UPI0001788C4E two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788C4E Length = 538 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 2/124 (1%) Query: 113 SCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 A +T + + + + + L+ I ++S + +K K Sbjct: 413 QISGRLYAASRVLTQIHSKDNHIIHDIAQYLEQHYHDEISLQQIAGKFFLSREYISRKFK 472 Query: 173 QE-QTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 QE T S L R++ AK L+ + + +IAE GY YF F+K G +P Sbjct: 473 QEFGVTLSDFLGRIRIEKAKTLLLNPQIRIAQIAEMVGYQDEKYFSKVFKKMEGFTPNEY 532 Query: 231 SKEY 234 K++ Sbjct: 533 RKKH 536 >UniRef50_C7GHR9 Transcriptional regulator, AraC family n=2 Tax=Lachnospiraceae RepID=C7GHR9_9FIRM Length = 273 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 73/240 (30%), Gaps = 10/240 (4%) Query: 7 VIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYLQ 63 V + + Y +G+ +V V H++ + E + Y + Sbjct: 33 VYVTDGDIELGVGQELYHMDEGDFAIVFPNVIHHYQVFGKKENKVIYLYLDPTLFPSYYK 92 Query: 64 CTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKG 123 I P + + I YL + + + L+ A Sbjct: 93 ELQI-----YSPKNPVVKKEQVHPDVVNAIKYLAGITEGNPMLIQAYVQMILAHVFAEMP 147 Query: 124 FITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQIL 182 + T G + V L+ + L +S+ +L + + FS+ + Sbjct: 148 MVDKSTVGSDDLIYNAVEYVAKNFREKISLEKMAYDLCVSKYVLSRMFAKTFHCNFSKYV 207 Query: 183 LDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHTG 241 R+ +A + S+ I CG+ S F F+ + +P+ K + G Sbjct: 208 NGVRLNYAVAALENTMDSITNICLDCGFESQRTFNRVFKDRYKITPREYRKRMEHNNRNG 267 >UniRef50_C7G8V4 Transcriptional regulator, AraC family n=2 Tax=Clostridiales RepID=C7G8V4_9FIRM Length = 310 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 46/249 (18%), Positives = 87/249 (34%), Gaps = 15/249 (6%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRT-HFEPYERHFKEIGFTENTIKKYLQC 64 ++ + + ++ + Y EIL++ + + P F ++I + Sbjct: 61 IILPVENHYDVEASGQAYHILPSEILIIPSGEMHALYAPESGKRFIFLFDVSSIAQMKGY 120 Query: 65 TNIQTVTVP----VPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAA 120 T+IQ++ + + N LL +M S L + Sbjct: 121 TSIQSLMTSCLHITKTTYPQIYNDVYQLLVQMRNEYFSSNEFRELAIYSHLINLFVSIGR 180 Query: 121 CKGFITLLTNGVLSVSGK--------VRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 + L S K V + ++ L +I D S+ + K Sbjct: 181 NRINNVDLFPNTRSHKQKEYLQKFNEVLDYIDSHYTEELTLDNIADFSGFSKYHFTRLFK 240 Query: 173 QEQ-TTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 Q +TF L+ R++ A+ L+ E S+ +IA Q G++S S F F++ G +P Sbjct: 241 QYTDSTFYDYLIYRRIKAAEELLANPELSITEIALQSGFSSISTFNRIFKQKKGCTPSEY 300 Query: 231 SKEYRCQSH 239 Y H Sbjct: 301 RSLYSMNRH 309 >UniRef50_A8S9Z6 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S9Z6_9FIRM Length = 285 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 15/243 (6%) Query: 6 SVIFIHHAFNA-NILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTENTI--- 58 ++F+ + Y G+I + E ++ I F + Sbjct: 43 ELVFVKQGMGLVQVGVVTYPAYRGDIFIFAPGTLHALRQAEGQRMEYENIIFEPELLGGA 102 Query: 59 -----KKYLQCTNIQTVTVPVPAKFLRASNVPTGL-LNEMIAYLNSEERNHHNFSELLLF 112 +KYL +++PV + L E+ ++ + + L Sbjct: 103 EDLCAEKYLLPLQSGRLSLPVRLTPNDLCYLQAAACLRELEDANRAKRPGYELLVKGALL 162 Query: 113 SCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLK 172 L++ A V ++ A P ++ D S S + + Sbjct: 163 RFLALLIAQGRQCLSTETADTQRLKTVLQWLSAHYAEPLRVADAAGVCSFSASHFMRWFR 222 Query: 173 Q-EQTTFSQILLDARMQHAKNLIRV-EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 Q +F L + R+ A +R + +V IA +CG+ + SYF AF+ HFG +P+ Sbjct: 223 QMTGQSFIAFLNEYRLNTAAEALRTTDETVLTIASRCGFENLSYFNRAFKAHFGMTPRDY 282 Query: 231 SKE 233 K+ Sbjct: 283 RKK 285 >UniRef50_A4XK77 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XK77_CALS8 Length = 273 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 78/231 (33%), Gaps = 10/231 (4%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRTHF--EPYERHFKEIGFTENTIKKYLQCTNI 67 + + + + Y + + + + + + F + L+ I Sbjct: 46 LEGSGYLIVDGQKYLVDENTAFFLYPGIAHEYFAATSKWSTIWLTFNGPASETILKTMGI 105 Query: 68 QTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFS-CLSIFAACKGFIT 126 + P L G+L + + L++S L +F + I Sbjct: 106 R----PFEIFKLTNKKYLEGMLEAISNKASVYNYIVSIECSQLIYSFILHMFLNLQNKIE 161 Query: 127 LLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDA 185 V + L +I + +S L K+ QTT + L+ Sbjct: 162 KNFENNYLKLLPVLQYIEENYKKAISLDEISSIVNLSPQHLCTVFKKTFQTTPYEYLIRV 221 Query: 186 RMQHAKNLI--RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEY 234 R+Q AK L+ + + ++ + G+ + SYF Y F+K G +P + + + Sbjct: 222 RIQKAKELLMRQSSIQIKEVCYEVGFKNPSYFCYMFKKLEGITPLQFKRLF 272 >UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=Bacteria RepID=A4XWL1_PSEMY Length = 364 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 1/123 (0%) Query: 112 FSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL 171 + + +G S+ ++R ++ L+ + L+ S L++ L Sbjct: 240 RTLKQFLEHSPADLLARPDGGDSLISQIRRLLGRDCRTWPDLEQVAQQLHTSPQTLRRHL 299 Query: 172 KQEQTTFSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRV 230 ++E T+F ++ R A + R E +++ IAEQ G++ S F AF+K G +P Sbjct: 300 REEGTSFQELKDHLRRDLAIYHLGRDELAIHDIAEQLGFSEPSAFHRAFKKWTGLTPGAY 359 Query: 231 SKE 233 + Sbjct: 360 RAQ 362 >UniRef50_Q1ZUP8 Transcriptional regulator, AraC family protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZUP8_PHOAS Length = 292 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 89/236 (37%), Gaps = 30/236 (12%) Query: 24 AFSDGEILMVDNAVRTHFE--------PYERHFKEIGFTENTIKKYLQCTNIQTVTVPVP 75 E+L++ V FE P E H K+++ + Sbjct: 63 QIEHNELLLIGPGVAHSFESINSDEKNPCEAHVIWFS------KEWIANLIYSCAELRTL 116 Query: 76 AKFLRASNV----PTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNG 131 +R +N T ++ +LNS + +L L +A + TLL+ Sbjct: 117 MPIIRDANKGVRFSTQTAEKVYQHLNSFDDLTPIGQLAVLIQILDELSADQSHTTLLSYA 176 Query: 132 VL----------SVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQ 180 S +V ++ + LK + D +Y+SE+ + + + ++ Sbjct: 177 QSEEKEKPNNDFSKIAQVCKYIDKHYSSDITLKKLADYMYVSENTVHRWFIQHFNESYIS 236 Query: 181 ILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 L R+ HA NL+ ++ IAE GY + S F +F+K+ G SP K+++ Sbjct: 237 YLTKLRLNHASNLLITTLQPISLIAESVGYTNRSNFNRSFKKYKGISPSLYRKQFK 292 >UniRef50_Q03FA9 Transcriptional regulator, AraC family n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03FA9_PEDPA Length = 298 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 86/224 (38%), Gaps = 7/224 (3%) Query: 21 KDYAFSDGEILMVDNAVRTH---FEPYERHFKEIGFTENTIKKYLQCTNIQ-TVTVPVPA 76 +++ G I+++ F+ F +++ +Y+ +Q + + Sbjct: 74 EEWLIESGSIVLLPPGKEHTYYAFDDDPWDIFWAHFNGDSVNEYIPQEALQGNGFLVINK 133 Query: 77 KFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGV-LSV 135 + +MI L++ F + + + + + + + Sbjct: 134 TSTEDMQMLMSQFWQMIQALSAGFSYQSVFYSSQVLGATLAYVSLQSVLPHDSYTMGNEY 193 Query: 136 SGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKNLI 194 K + L + + L +S+S L + +Q T+ +Q +LD +M+ A + Sbjct: 194 ITKAVKYIYDHFEEKVSLSTLTEVLDVSKSYLSRIFRQTVGTSVNQFILDIKMKQACYYL 253 Query: 195 R-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 + +V++IA + GY YF F+K G+SP+ K+ + + Sbjct: 254 KDTNLAVHQIASRLGYDDPYYFSRIFKKVVGSSPRVFRKQEKNR 297 >UniRef50_A0Q2M6 Transcriptional regulatory protein n=6 Tax=Clostridium RepID=A0Q2M6_CLONN Length = 246 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 137 GKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQHAKN-LI 194 +V ++ + LKD+ D + S S L K K+E F++ + R+ AK LI Sbjct: 145 QEVVEYIDKNFKNDITLKDVADHVNFSSSYLSKLFKKEMGINFNRYITKIRIDKAKEILI 204 Query: 195 RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 S+N+IA GY +YF F+K +P R Sbjct: 205 NSNISINEIAFSVGYNEPNYFCKVFKKIVNMTPSEYRTNSR 245 >UniRef50_A8S8J9 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8J9_9FIRM Length = 351 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 3/166 (1%) Query: 75 PAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACKGFITLLTNGVLS 134 ++ V + +E +L S + E+ + L +L S Sbjct: 185 MVHYIVDRAVKSHTRDETYKWLMSA-NAEQSSEEIQIQELLPQEEHRPQQTGVLPVNPSS 243 Query: 135 VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL-KQEQTTFSQILLDARMQHAKNL 193 V + +K++ D ++S S + K+ +F + R+Q AK L Sbjct: 244 VVYPAVVYIRDHLQQEITMKEMADLCHLSPSYFSRTFNKETGESFVNYISSRRIQLAKEL 303 Query: 194 I-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 + S+++IAE+ GY + S+F F++ G P + + Sbjct: 304 LLETGKSISQIAEEVGYDNISHFTAVFKRTEGIPPSVYRSSKKRKK 349 >UniRef50_B3EYL7 Two-component response regulator n=5 Tax=Firmicutes RepID=B3EYL7_BACST Length = 404 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 3/107 (2%) Query: 129 TNGVLSVSGKVRNIVNMKPAH-PWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDAR 186 + + + + R + + L+ + + L +S L + +KQE +F +L R Sbjct: 289 ESRLSPIVRRARQYIQKHFSQSDLTLESVAEFLNVSPVYLSRMIKQELGISFIHLLTKIR 348 Query: 187 MQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 M+ A L+ E +++IAE+ GY + YF AF+K G SP + + Sbjct: 349 MEKAAELLLSTELPIHEIAERVGYDTQHYFSTAFKKAMGVSPNQYRR 395 >UniRef50_B7K731 Transcriptional regulator, AraC family n=2 Tax=Cyanobacteria RepID=B7K731_CYAP7 Length = 309 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 91/232 (39%), Gaps = 12/232 (5%) Query: 18 ILDKDY--AFSDGEILMVDNAVRTHFEPY-ERHFKEIGFTENTIKKYLQCTNIQTVTVPV 74 I + Y +S G+I + + + E HF +I +++ Q + Sbjct: 78 IGKQHYVGIYSKGDICLTPAGLEGGYRAEGEDHFLQIQIEPQFLEQVAQQIDEIKANHVE 137 Query: 75 PAKFLRASNVPTGLLNEMIAYLNSEERNH------HNFSELLLFSCLSIFAACKGFITLL 128 R N + M+ ++ + + + L + L + K + L Sbjct: 138 LVPKFRIRNPNLEHIIMMLYRELTQGMGYGSKLYIESLTNALAINLLRDYCVTKISLNLY 197 Query: 129 TNG-VLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDAR 186 + G + + +N A KL ++ + + IS+ + KQ + Q L+ R Sbjct: 198 SGGLSDGQLLLITDYINDNLAGEIKLSNLSELIGISQFHFSRLFKQTVGISPHQYLMRQR 257 Query: 187 MQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQ 237 ++ AK L++ SV ++A CG++S S+F FR+ G +PK R + Sbjct: 258 IERAKLLLKNSPLSVVEVALSCGFSSHSHFGKYFRQITGLTPKEYRVNRRGE 309 >UniRef50_C4Z0X2 Two-component system, response regulator YesN n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z0X2_EUBE2 Length = 249 Score = 130 bits (328), Expect = 3e-29, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 91/246 (36%), Gaps = 16/246 (6%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE---IGFTENTIKKYLQCT 65 +H +I ++ + S+G I+ + E I F+++ I+ Q Sbjct: 1 MMHGNCTISIDNRLFTLSEGNIIFIPANSVHRTSYIGELVPERTYIEFSKDYIETISQTL 60 Query: 66 NIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFS--------ELLLFSCLSI 117 + L ++ + + E +S + L+ + + + Sbjct: 61 GKNWAEHNLWGHILYIEKEKREKIDFLFREIQKEYDIVDGYSDCCIRQLFQYLIINLIRL 120 Query: 118 FAACKGFITLLTNGVLSVSGKVR---NIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE 174 K +TN ++ + + + LKD+ L ++ S K K Sbjct: 121 DRNTKDIKEFITNSDNKINQNMIIAAKYIAENFKNDITLKDVASHLNLNPSYFSSKFKAF 180 Query: 175 Q-TTFSQILLDARMQHAK-NLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSK 232 F++ L + R+ HA+ LI + S++ IA +CG+ +++YF F+ G SP K Sbjct: 181 NNIGFAEYLRNIRVNHAEWYLIETDLSLSDIASECGFCNSNYFGDTFKLVNGISPSEFRK 240 Query: 233 EYRCQS 238 + + Sbjct: 241 NNKPKK 246 >UniRef50_C0C2H5 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2H5_9CLOT Length = 300 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 87/246 (35%), Gaps = 21/246 (8%) Query: 9 FIHHAFNANILDKDYAFSDGEILMVDNAVRTH---FEPYERHFKEIGFTENTIKKY---- 61 + + Y G+ L V++ FE + + F + I Y Sbjct: 52 ILEGTMTYQVNQNLYQLGKGDCLFVNSNALHSGCMFENNDCKYIVATFNPSLIYGYEKSD 111 Query: 62 ------LQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCL 115 N T V + ++ EM A+ E + + L Sbjct: 112 IDTNYTFPLLNTDNFTSFVFRDGADGNETFQKIMKEMAAFYTEENACYELHIKSRLCELW 171 Query: 116 SIFAACKGFITLLTNGVLSVSGKVRNI------VNMKPAHPWKLKDICDCLYISESLLKK 169 ++ L + L+ + ++ + ++ P L + + + S+S + Sbjct: 172 ALLFEEFQRSQLPSGAGLAEAKQISRLKNAIIFIHSSYTDPITLDQMAESCHTSKSEFCR 231 Query: 170 KLKQE-QTTFSQILLDARMQHAKNLIRVE-GSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227 K+ T + LL R+Q + L+ + S+ +IA Q G++ +SY+ FRK+ G SP Sbjct: 232 IFKKTLHQTPFEYLLRYRIQKSLPLLVTDTCSITEIASQVGFSGSSYYSEVFRKYMGCSP 291 Query: 228 KRVSKE 233 + K Sbjct: 292 REYKKN 297 >UniRef50_C4Z9T9 Ada regulatory protein/6-O-methylguanine-DNA methyltransferase n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z9T9_EUBR3 Length = 276 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 85/242 (35%), Gaps = 11/242 (4%) Query: 3 LVCSVIFIH-HAFNANILDKDYAFSDGEILMVDNAVRTH---FEPYERHFKEIGFTENTI 58 + FI I ++ S ++++ V + +G + Sbjct: 40 HFTEIFFIKDGTGRMLIENESLPVSSNSLVVIGAQVTHTEFSDPENPLDYYVLGVEGLKL 99 Query: 59 KKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIF 118 + + VP A +L EM + ++ ++L+ Sbjct: 100 N---TDKEPEYIHVPASANSPFIRQCFENILREMHNKQDRYAEICQHYLDILILYFCRKD 156 Query: 119 AACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTT 177 + + KV+ + L + + +S+ L + + + Sbjct: 157 HVSYEVVDAQNSSRE--CHKVKRFIEHNYQSMISLDSLAENCSLSKYYLSHRFAELYGKS 214 Query: 178 FSQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRC 236 L + R+ A++L+ S+ +IA G++STSYF +F+K+F SP++ K +R Sbjct: 215 PIAYLNEVRLASARDLLLTTNHSIEEIAGCIGFSSTSYFSQSFQKNFHESPQQFRKSHRV 274 Query: 237 QS 238 ++ Sbjct: 275 RT 276 >UniRef50_Q5WL10 AraC/XylS family transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL10_BACSK Length = 298 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 77/238 (32%), Gaps = 13/238 (5%) Query: 10 IHHAFNANILDKDYAFSDGEILMVDNAVRTHF---EPYERHFKEIGFTE--NTIKKYLQC 64 + + + Y G+I+ +D R E E F + + + Sbjct: 44 LSGSCKVETDEGSYQLKKGQIIFLDAGTRHRLIVSERCRMFNVEFSFEQGCTAFPPFFKL 103 Query: 65 TNIQ-----TVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFA 119 V L ++ L +I ++ + +LLL L A Sbjct: 104 CKENRALGNMVNKQASQLLLHDTDDTYQCLRRLILEVDKKSEQTDFMVQLLLSEYLIRIA 163 Query: 120 ACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQ-EQTTF 178 + + + ++ + DI + +++ L++ K + Sbjct: 164 ELAEA-KVAEPDQQAYVKRALAYIHQNYDREVSVADIANSVHLHPGYLQRVFKAFTGKSI 222 Query: 179 SQILLDARMQHAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 + L+ R+ AK ++ + + S+ I G S YF F+KH +P K ++ Sbjct: 223 HEFLISYRINKAKAMLKQTDISITDIPHYIGMNSQQYFSTTFKKHVKCTPSEYRKRHQ 280 >UniRef50_C6LDG4 Transcriptional regulator, AraC family n=3 Tax=Clostridiales RepID=C6LDG4_9FIRM Length = 369 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 71/242 (29%), Gaps = 16/242 (6%) Query: 6 SVIFIHHAF-NANILDKDYAFSDGEILMVDNAVRTHF-------EPYERHFKEIGF---- 53 +IF+ G+I ++ YE E+ F Sbjct: 127 EIIFVKKGTGRIQTGRNMQEARSGDIFVMPPGTLHAIYAAAGYNMEYENIIFEVEFLGGG 186 Query: 54 --TENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLL 111 + + + Q + V + + L ++ ER + + L Sbjct: 187 AADVCDKEYLVPLASGQLLQPAVFSPVDAGYKQISACLRRAEELCSARERGYELGVKAAL 246 Query: 112 FSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKL 171 L + +V + A P + D+ S S + Sbjct: 247 LELLLYLLRMCPEAPERDTPDMERLKRVLQRIEQDYAKPLTVPDMAAVCGCSSSHFMRWF 306 Query: 172 KQ-EQTTFSQILLDARMQHAKN-LIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKR 229 K+ T+ L + R+ A L + + IAE G+ + S F F+K +G +P+ Sbjct: 307 KRMTGTSPLAYLNERRLAAAAENLRETDDKILVIAENAGFENLSNFNRQFKKRYGVTPRA 366 Query: 230 VS 231 Sbjct: 367 YR 368 >UniRef50_A5ZYS8 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZYS8_9FIRM Length = 304 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 85/238 (35%), Gaps = 9/238 (3%) Query: 6 SVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY---ERHFKEIGFTENTIKKYL 62 + + Y+ G ++ H+E F + F + Y Sbjct: 63 IIYTLRGKGLLKYHGSQYSLHPGTTAYINCMEHHHYECLQKQNWEFLWLHFNGPSALGYY 122 Query: 63 QCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERNHHNFSELLLFSCLSIFAACK 122 + + + + +++ ++ + S L+ + L+ Sbjct: 123 E----EFMRSNFHILDSLDPFFMESTMRRILSITQRKDIHSEILSSCLIINILTRILIEN 178 Query: 123 GFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQI 181 L + + V ++ P L+ + +S+ L ++ K+ ++ Sbjct: 179 DTENLSLGFMPTYLKTVLKAIDQHFQEPLSLESLAIAAGVSKYHLAREFKKYIGMPPNEY 238 Query: 182 LLDARMQHAKNLIR-VEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 L+ R+ H+K L++ + ++ +IA CG+ S++I F+KH G +P + +E+ Sbjct: 239 LIVTRLNHSKTLLKYEDLTIEEIAYSCGFHQVSHYINLFKKHEGCTPLKFRREWHSNE 296 >UniRef50_C6D3S3 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3S3_PAESJ Length = 538 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Query: 130 NGVLSVSGKVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQE-QTTFSQILLDARMQ 188 SV + + ++ A +DI +Y++ L + K+E + S LL R++ Sbjct: 422 EHSPSVVEQAKTYIHQHLAEEISREDIASHVYLNPDYLTRIFKRETGMSISDYLLQQRLR 481 Query: 189 HAKNLI-RVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQS 238 A L+ + +V+ +A + GYA+ S+F F+K+ G +P + + Sbjct: 482 IAAELLANTDLAVSAVASRIGYANFSHFSRIFKKYMGINPLEYRQSQESRQ 532 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.148 0.409 Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,518,165,916 Number of Sequences: 3077464 Number of extensions: 85005593 Number of successful extensions: 313943 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 15392 Number of HSP's successfully gapped in prelim test: 2617 Number of HSP's that attempted gapping in prelim test: 261833 Number of HSP's gapped (non-prelim): 24822 length of query: 253 length of database: 1,040,396,356 effective HSP length: 126 effective length of query: 127 effective length of database: 652,635,892 effective search space: 82884758284 effective search space used: 82884758284 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 92 (39.9 bits)