Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	R	Q	S	F	F	L	V	P	L	I	C	L	S	S	A	L	W	A	A	P	A	T	V	N	V	E	V	L	Q	D	K	L	D	H	P	W	A	L	A	F	L	P	D	N	H	G	M	L	I	T	L	R	G	G	E	L	R	H
Secondary structure
SS confidence
Disorder		?	?	?												?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		W	Q	A	G	K	G	L	S	A	P	L	S	G	V	P	D	V	W	A	H	G	Q	G	G	L	L	D	V	V	L	A	P	D	F	A	Q	S	R	R	I	W	L	S	Y	S	E	V	G	D	D	G	K	A	G	T	A	V	G	Y	G
Secondary structure
SS confidence
Disorder																																																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		R	L	S	D	D	L	S	K	V	T	D	F	R	T	V	F	R	Q	M	P	K	L	S	T	G	N	H	F	G	G	R	L	V	F	D	G	K	G	Y	L	F	I	A	L	G	E	N	N	Q	R	P	T	A	Q	D	L	D	K	L	Q
Secondary structure
SS confidence
Disorder									?	?													?																											?	?	?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	K	L	V	R	L	T	D	Q	G	E	I	P	D	D	N	P	F	I	K	E	S	G	A	R	A	E	I	W	S	Y	G	I	R	N	P	Q	G	M	A	M	N	P	W	S	N	A	L	W	L	N	E	H	G	P	R	G	G	D	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		I	N	I	P	Q	K	G	K	N	Y	G	W	P	L	A	T	W	G	I	N	Y	S	G	F	K	I	P	E	A	K	G	E	I	V	A	G	T	E	Q	P	V	F	Y	W	K	D	S	P	A	V	S	G	M	A	F	Y	N	S	D	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		F	P	Q	W	Q	Q	K	L	F	I	G	A	L	K	D	K	D	V	I	V	M	S	V	N	G	D	K	V	T	E	D	G	R	I	L	T	D	R	G	Q	R	I	R	D	V	R	T	G	P	D	G	Y	L	Y	V	L	T	D	E	S
Secondary structure
SS confidence
Disorder																											?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.
Sequence		S	G	E	L	L	K	V	S	P	R	N
Secondary structure
SS confidence
Disorder											?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2g8s chain B Region: 25 - 370 Aligned: 346 Modelled: 346 Confidence: 100.0% Identity: 98% PDB header:sugar binding protein Chain: B: PDB Molecule:glucose/sorbosone dehydrogenases; PDBTitle: crystal structure of the soluble aldose sugar dehydrogenase2 (asd) from escherichia coli in the apo-form Phyre2 PDB 1cru chain A Region: 14 - 367 Aligned: 349 Modelled: 350 Confidence: 100.0% Identity: 28% Fold: 6-bladed beta-propeller Superfamily: Soluble quinoprotein glucose dehydrogenase Family: Soluble quinoprotein glucose dehydrogenase Phyre2 PDB 3a9g chain A Region: 25 - 370 Aligned: 323 Modelled: 329 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of pqq-dependent sugar dehydrogenase apo-form Phyre2 PDB 2wg3 chain C Region: 23 - 369 Aligned: 318 Modelled: 328 Confidence: 100.0% Identity: 17% PDB header:signaling protein Chain: C: PDB Molecule:hedgehog-interacting protein; PDBTitle: crystal structure of the complex between human hedgehog-2 interacting protein hip and desert hedgehog without calcium Phyre2 PDB 2ism chain A Region: 24 - 367 Aligned: 314 Modelled: 327 Confidence: 100.0% Identity: 35% PDB header:sugar binding protein Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of the putative oxidoreductase (glucose2 dehydrogenase) (ttha0570) from thermus theromophilus hb8 Phyre2 PDB 3das chain A Region: 20 - 368 Aligned: 319 Modelled: 329 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the pqq-bound form of aldose sugar2 dehydrogenase (adh) from streptomyces coelicolor Phyre2 PDB 2qe8 chain B Region: 26 - 371 Aligned: 305 Modelled: 318 Confidence: 99.9% Identity: 14% PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative hydrolase (ava_4197) from anabaena2 variabilis atcc 29413 at 1.35 a resolution Phyre2 PDB 1pjx chain A Region: 27 - 367 Aligned: 274 Modelled: 285 Confidence: 99.9% Identity: 12% Fold: 6-bladed beta-propeller Superfamily: Calcium-dependent phosphotriesterase Family: SGL-like Phyre2 PDB 2dg1 chain A domain 1 Region: 24 - 368 Aligned: 273 Modelled: 302 Confidence: 99.9% Identity: 15% Fold: 6-bladed beta-propeller Superfamily: Calcium-dependent phosphotriesterase Family: SGL-like Phyre2 PDB 3dr2 chain A Region: 23 - 368 Aligned: 266 Modelled: 284 Confidence: 99.8% Identity: 9% PDB header:hydrolase Chain: A: PDB Molecule:exported gluconolactonase; PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways Phyre2 PDB 3g4h chain B Region: 29 - 369 Aligned: 263 Modelled: 287 Confidence: 99.8% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:regucalcin; PDBTitle: crystal structure of human senescence marker protein-30 (zinc bound) Phyre2 PDB 3bws chain A Region: 22 - 371 Aligned: 297 Modelled: 303 Confidence: 99.8% Identity: 14% PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 Phyre2 PDB 3hrp chain A Region: 34 - 368 Aligned: 266 Modelled: 278 Confidence: 99.8% Identity: 12% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics protein of unknown function2 (np_812590.1) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a3 resolution Phyre2 PDB 3fw0 chain A Region: 34 - 371 Aligned: 273 Modelled: 293 Confidence: 99.8% Identity: 17% PDB header:lyase Chain: A: PDB Molecule:peptidyl-glycine alpha-amidating monooxygenase; PDBTitle: structure of peptidyl-alpha-hydroxyglycine alpha-amidating2 lyase (pal) bound to alpha-hydroxyhippuric acid (non-3 peptidic substrate) Phyre2 PDB 3qqz chain A Region: 23 - 369 Aligned: 237 Modelled: 262 Confidence: 99.8% Identity: 13% PDB header:metal binding protein Chain: A: PDB Molecule:putative uncharacterized protein yjik; PDBTitle: crystal structure of the c-terminal domain of the yjik protein from2 escherichia coli cft073 Phyre2 PDB 3dm0 chain A Region: 13 - 367 Aligned: 308 Modelled: 310 Confidence: 99.8% Identity: 13% PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana Phyre2 PDB 2qc5 chain A Region: 23 - 364 Aligned: 284 Modelled: 299 Confidence: 99.8% Identity: 10% PDB header:lyase Chain: A: PDB Molecule:streptogramin b lactonase; PDBTitle: streptogramin b lyase structure Phyre2 PDB 2p4o chain A domain 1 Region: 35 - 368 Aligned: 252 Modelled: 274 Confidence: 99.8% Identity: 13% Fold: 6-bladed beta-propeller Superfamily: Calcium-dependent phosphotriesterase Family: All0351-like Phyre2 PDB 3e5z chain A Region: 21 - 370 Aligned: 270 Modelled: 300 Confidence: 99.8% Identity: 15% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130. Phyre2 PDB 2z2p chain A Region: 25 - 368 Aligned: 288 Modelled: 310 Confidence: 99.7% Identity: 8% PDB header:lyase/antibiotic Chain: A: PDB Molecule:virginiamycin b lyase; PDBTitle: crystal structure of catalytically inactive h270a virginiamycin b2 lyase from staphylococcus aureus with quinupristin Phyre2 1 c2g8sB_ 2 d1crua_ 3 c3a9gA_ 4 c2wg3C_ 5 c2ismA_ 6 c3dasA_ 7 c2qe8B_ 8 d1pjxa_ 9 d2dg1a1 10 c3dr2A_ 11 c3g4hB_ 12 c3bwsA_ 13 c3hrpA_ 14 c3fw0A_ 15 c3qqzA_ 16 c3dm0A_ 17 c2qc5A_ 18 d2p4oa1 19 c3e5zA_ 20 c2z2pA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2g8sB_ 100.0 98 PDB header:sugar binding protein Chain: B: PDB Molecule:glucose/sorbosone dehydrogenases; PDBTitle: crystal structure of the soluble aldose sugar dehydrogenase2 (asd) from escherichia coli in the apo-form 2 d1crua_ 100.0 28 Fold:6-bladed beta-propeller Superfamily:Soluble quinoprotein glucose dehydrogenase Family:Soluble quinoprotein glucose dehydrogenase 3 c3a9gA_ 100.0 32 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of pqq-dependent sugar dehydrogenase apo-form 4 c2wg3C_ 100.0 17 PDB header:signaling protein Chain: C: PDB Molecule:hedgehog-interacting protein; PDBTitle: crystal structure of the complex between human hedgehog-2 interacting protein hip and desert hedgehog without calcium 5 c2ismA_ 100.0 35 PDB header:sugar binding protein Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of the putative oxidoreductase (glucose2 dehydrogenase) (ttha0570) from thermus theromophilus hb8 6 c3dasA_ 100.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the pqq-bound form of aldose sugar2 dehydrogenase (adh) from streptomyces coelicolor 7 c2qe8B_ 99.9 14 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative hydrolase (ava_4197) from anabaena2 variabilis atcc 29413 at 1.35 a resolution 8 d1pjxa_ 99.9 12 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 9 d2dg1a1 99.9 15 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 10 c3dr2A_ 99.8 9 PDB header:hydrolase Chain: A: PDB Molecule:exported gluconolactonase; PDBTitle: structural and functional analyses of xc5397 from2 xanthomonas campestris: a gluconolactonase important in3 glucose secondary metabolic pathways 11 c3g4hB_ 99.8 16 PDB header:hydrolase Chain: B: PDB Molecule:regucalcin; PDBTitle: crystal structure of human senescence marker protein-30 (zinc bound) 12 c3bwsA_ 99.8 14 PDB header:unknown function Chain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49 13 c3hrpA_ 99.8 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics protein of unknown function2 (np_812590.1) from bacteroides thetaiotaomicron vpi-5482 at 1.70 a3 resolution 14 c3fw0A_ 99.8 17 PDB header:lyase Chain: A: PDB Molecule:peptidyl-glycine alpha-amidating monooxygenase; PDBTitle: structure of peptidyl-alpha-hydroxyglycine alpha-amidating2 lyase (pal) bound to alpha-hydroxyhippuric acid (non-3 peptidic substrate) 15 c3qqzA_ 99.8 13 PDB header:metal binding protein Chain: A: PDB Molecule:putative uncharacterized protein yjik; PDBTitle: crystal structure of the c-terminal domain of the yjik protein from2 escherichia coli cft073 16 c3dm0A_ 99.8 13 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 17 c2qc5A_ 99.8 10 PDB header:lyase Chain: A: PDB Molecule:streptogramin b lactonase; PDBTitle: streptogramin b lyase structure 18 d2p4oa1 99.8 13 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:All0351-like 19 c3e5zA_ 99.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative gluconolactonase; PDBTitle: x-ray structure of the putative gluconolactonase in protein family2 pf08450. northeast structural genomics consortium target drr130. 20 c2z2pA_ 99.7 8 PDB header:lyase/antibiotic Chain: A: PDB Molecule:virginiamycin b lyase; PDBTitle: crystal structure of catalytically inactive h270a virginiamycin b2 lyase from staphylococcus aureus with quinupristin 21 c2ghsA_ not modelled 99.7 13 PDB header:calcium-binding protein Chain: A: PDB Molecule:agr_c_1268p; PDBTitle: crystal structure of a calcium-binding protein, regucalcin2 (agr_c_1268) from agrobacterium tumefaciens str. c58 at 1.55 a3 resolution 22 d2ghsa1 not modelled 99.7 13 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:SGL-like 23 c3kyaA_ not modelled 99.7 12 PDB header:hydrolase Chain: A: PDB Molecule:putative phosphatase; PDBTitle: crystal structure of putative phosphatase (np_812416.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.77 a resolution 24 c3tc9B_ not modelled 99.7 12 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical hydrolase; PDBTitle: crystal structure of a hypothetical hydrolase (bt_3476) from2 bacteroides thetaiotaomicron vpi-5482 at 2.23 a resolution 25 c3hfqB_ not modelled 99.7 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein lp_2219; PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118. 26 c1gq1B_ not modelled 99.7 8 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form 27 c1nnoA_ not modelled 99.7 8 PDB header:oxidoreductase Chain: A: PDB Molecule:nitrite reductase; PDBTitle: conformational changes occurring upon no binding in nitrite2 reductase from pseudomonas aeruginosa 28 c1r5mA_ not modelled 99.6 8 PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2 29 c3jroA_ not modelled 99.6 11 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice 30 d1rwia_ not modelled 99.6 17 Fold:6-bladed beta-propeller Superfamily:NHL repeat Family:NHL repeat 31 d1nira2 not modelled 99.6 9 Fold:8-bladed beta-propeller Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 32 c3fgbB_ not modelled 99.6 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein q89zh8_bactn; PDBTitle: crystal structure of the q89zh8_bactn protein from2 bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr289b. 33 c2fp8A_ not modelled 99.6 13 PDB header:lyase Chain: A: PDB Molecule:strictosidine synthase; PDBTitle: structure of strictosidine synthase, the biosynthetic entry to the2 monoterpenoid indole alkaloid family 34 c3ei4D_ not modelled 99.6 12 PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex 35 c3vh0C_ not modelled 99.6 9 PDB header:protein binding/dna Chain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna 36 c1nr0A_ not modelled 99.6 13 PDB header:structural protein Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: two seven-bladed beta-propeller domains revealed by the2 structure of a c. elegans homologue of yeast actin3 interacting protein 1 (aip1). 37 d1qksa2 not modelled 99.6 8 Fold:8-bladed beta-propeller Superfamily:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Family:C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 38 d1ri6a_ not modelled 99.5 10 Fold:7-bladed beta-propeller Superfamily:Putative isomerase YbhE Family:Putative isomerase YbhE 39 d1v04a_ not modelled 99.5 12 Fold:6-bladed beta-propeller Superfamily:Calcium-dependent phosphotriesterase Family:Serum paraoxonase/arylesterase 1, PON1 40 c3u4yA_ not modelled 99.5 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771. 41 d1q7fa_ not modelled 99.5 10 Fold:6-bladed beta-propeller Superfamily:NHL repeat Family:NHL repeat 42 c3fm0A_ not modelled 99.5 10 PDB header:biosynthetic protein Chain: A: PDB Molecule:protein ciao1; PDBTitle: crystal structure of wd40 protein ciao1 43 c1n6dE_ not modelled 99.5 15 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative 44 c3iz6a_ not modelled 99.5 11 PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 45 c2i0tB_ not modelled 99.5 13 PDB header:oxidoreductase Chain: B: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of phenylacetaldehyde derived r-2 carbinolamine adduct of aromatic amine dehydrogenase 46 c3jzhA_ not modelled 99.5 7 PDB header:gene regulation Chain: A: PDB Molecule:polycomb protein eed; PDBTitle: eed-h3k79me3 47 c2iwaA_ not modelled 99.5 14 PDB header:transferase Chain: A: PDB Molecule:glutamine cyclotransferase; PDBTitle: unbound glutaminyl cyclotransferase from carica papaya. 48 d2madh_ not modelled 99.5 10 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 49 c2pbiB_ not modelled 99.5 13 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta 5; PDBTitle: the multifunctional nature of gbeta5/rgs9 revealed from its crystal2 structure 50 d1jmxb_ not modelled 99.4 10 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Quinohemoprotein amine dehydrogenase B chain 51 c3frxB_ not modelled 99.4 14 PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta- PDBTitle: crystal structure of the yeast orthologue of rack1, asc1. 52 c3dw8B_ not modelled 99.4 8 PDB header:hydrolase/hydrolase inhibitor Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2a 55 kda regulatory PDBTitle: structure of a protein phosphatase 2a holoenzyme with b55 subunit 53 c3ei3B_ not modelled 99.4 8 PDB header:dna binding protein Chain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex 54 c3iytG_ not modelled 99.4 13 PDB header:apoptosis Chain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex 55 c3i2nA_ not modelled 99.4 12 PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 92; PDBTitle: crystal structure of wd40 repeats protein wdr92 56 d2bbkh_ not modelled 99.4 9 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Methylamine dehydrogenase, H-chain 57 d1fwxa2 not modelled 99.4 8 Fold:7-bladed beta-propeller Superfamily:Nitrous oxide reductase, N-terminal domain Family:Nitrous oxide reductase, N-terminal domain 58 d2ovrb2 not modelled 99.4 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 59 d1tbga_ not modelled 99.4 13 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 60 d1k32a3 not modelled 99.4 12 Fold:7-bladed beta-propeller Superfamily:Tricorn protease domain 2 Family:Tricorn protease domain 2 61 c2h47F_ not modelled 99.4 10 PDB header:oxidoreductase/electron transport Chain: F: PDB Molecule:aromatic amine dehydrogenase; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 62 c4a11B_ not modelled 99.4 11 PDB header:dna binding protein Chain: B: PDB Molecule:dna excision repair protein ercc-8; PDBTitle: structure of the hsddb1-hscsa complex 63 c1k32E_ not modelled 99.4 12 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: crystal structure of the tricorn protease 64 c2j57J_ not modelled 99.4 8 PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: x-ray reduced paraccocus denitrificans methylamine2 dehydrogenase n-quinol in complex with amicyanin. 65 d1xfda1 not modelled 99.4 8 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 66 c2qxvA_ not modelled 99.4 8 PDB header:gene regulation Chain: A: PDB Molecule:embryonic ectoderm development; PDBTitle: structural basis of ezh2 recognition by eed 67 c1qniE_ not modelled 99.4 10 PDB header:oxidoreductase Chain: E: PDB Molecule:nitrous-oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution 68 c2pm9A_ not modelled 99.4 10 PDB header:protein transport Chain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the2 copii vesicular coat 69 c2oajA_ not modelled 99.4 11 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:protein sni1; PDBTitle: crystal structure of sro7 from s. cerevisiae 70 c1vyhT_ not modelled 99.4 11 PDB header:hydrolase Chain: T: PDB Molecule:platelet-activating factor acetylhydrolase ib PDBTitle: paf-ah holoenzyme: lis1/alfa2 71 d1vyhc1 not modelled 99.4 11 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 72 c3mmyE_ not modelled 99.4 9 PDB header:nuclear protein Chain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 73 c3s94A_ not modelled 99.4 11 PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: crystal structure of lrp6-e1e2 74 c2zkqa_ not modelled 99.3 12 PDB header:ribosomal protein/rna Chain: A: PDB Molecule:18s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 75 d1yfqa_ not modelled 99.3 10 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:Cell cycle arrest protein BUB3 76 c3eg6A_ not modelled 99.3 9 PDB header:protein binding Chain: A: PDB Molecule:wd repeat-containing protein 5; PDBTitle: structure of wdr5 bound to mll1 peptide 77 d1gxra_ not modelled 99.3 8 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 78 c3mkqA_ not modelled 99.3 12 PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat 79 c2gnqA_ not modelled 99.3 9 PDB header:transcription Chain: A: PDB Molecule:wd-repeat protein 5; PDBTitle: structure of wdr5 80 d1qnia2 not modelled 99.3 9 Fold:7-bladed beta-propeller Superfamily:Nitrous oxide reductase, N-terminal domain Family:Nitrous oxide reductase, N-terminal domain 81 d1nr0a1 not modelled 99.3 12 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 82 c3jrpA_ not modelled 99.3 9 PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: sec13 with nup145c (aa109-179) insertion blade 83 c2w18A_ not modelled 99.3 10 PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 84 c1fwxB_ not modelled 99.2 9 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans 85 c3c75J_ not modelled 99.2 11 PDB header:oxidoreductase Chain: J: PDB Molecule:methylamine dehydrogenase heavy chain; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin 86 c3soqA_ not modelled 99.2 22 PDB header:protein binding/antagonist Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: the structure of the first ywtd beta propeller domain of lrp6 in2 complex with a dkk1 peptide 87 c3bg1E_ not modelled 99.2 11 PDB header:protein transport, hydrolase Chain: E: PDB Molecule:protein sec13 homolog; PDBTitle: architecture of a coat for the nuclear pore membrane 88 c2xznR_ not modelled 99.2 11 PDB header:ribosome Chain: R: PDB Molecule:rack1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 89 c3cfvA_ not modelled 99.2 11 PDB header:histone/chaperone Chain: A: PDB Molecule:histone-binding protein rbbp7; PDBTitle: structural basis of the interaction of rbap46/rbap48 with2 histone h4 90 c2j04B_ not modelled 99.2 7 PDB header:transcription Chain: B: PDB Molecule:ydr362cp; PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic 91 d2bgra1 not modelled 99.2 8 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 92 d1k8kc_ not modelled 99.2 7 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 93 d1l0qa2 not modelled 99.2 10 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:YVTN repeat 94 c3ow8A_ not modelled 99.2 15 PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 61; PDBTitle: crystal structure of the wd repeat-containing protein 61 95 c3pe7A_ not modelled 99.2 9 PDB header:lyase Chain: A: PDB Molecule:oligogalacturonate lyase; PDBTitle: oligogalacturonate lyase in complex with manganese 96 d1tl2a_ not modelled 99.1 12 Fold:5-bladed beta-propeller Superfamily:Tachylectin-2 Family:Tachylectin-2 97 d1pgua1 not modelled 99.1 11 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 98 c3acpA_ not modelled 99.1 9 PDB header:chaperone Chain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome 99 d1nr0a2 not modelled 99.1 10 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 100 c2hesX_ not modelled 99.1 8 PDB header:biosynthetic protein Chain: X: PDB Molecule:ydr267cp; PDBTitle: cytosolic iron-sulphur assembly protein- 1 101 c2w8bB_ not modelled 99.1 14 PDB header:protein transport/membrane protein Chain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal 102 c3c5mC_ not modelled 99.1 11 PDB header:lyase Chain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199 103 d1orva1 not modelled 99.1 10 Fold:8-bladed beta-propeller Superfamily:DPP6 N-terminal domain-like Family:DPP6 N-terminal domain-like 104 d1pbyb_ not modelled 99.1 12 Fold:7-bladed beta-propeller Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase Family:Quinohemoprotein amine dehydrogenase B chain 105 c3sbrF_ not modelled 99.1 9 PDB header:oxidoreductase Chain: F: PDB Molecule:nitrous-oxide reductase; PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate 106 c3greA_ not modelled 99.1 11 PDB header:signaling protein,protein binding Chain: A: PDB Molecule:serine/threonine-protein kinase vps15; PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd2 repeat domain 107 c3s8vA_ not modelled 99.1 10 PDB header:signaling protein Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: crystal structure of lrp6-dkk1 complex 108 c3fhcA_ not modelled 99.1 10 PDB header:transport protein/hydrolase Chain: A: PDB Molecule:nuclear pore complex protein nup214; PDBTitle: crystal structure of human dbp5 in complex with nup214 109 c3dsmA_ not modelled 99.0 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein bacuni_02894; PDBTitle: crystal structure of the surface layer protein bacuni_02894 from2 bacteroides uniformis, northeast structural genomics consortium3 target btr193d. 110 d1npea_ not modelled 99.0 17 Fold:6-bladed beta-propeller Superfamily:YWTD domain Family:YWTD domain 111 c2ojhA_ not modelled 99.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1656/agr_c_3050; PDBTitle: the structure of putative tolb from agrobacterium tumefaciens 112 c1n7dA_ not modelled 99.0 17 PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: extracellular domain of the ldl receptor 113 c2aq5A_ not modelled 99.0 11 PDB header:structural protein Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of murine coronin-1 114 d1nexb2 not modelled 99.0 9 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 115 c2ovqB_ not modelled 99.0 11 PDB header:transcription/cell cycle Chain: B: PDB Molecule:f-box/wd repeat protein 7; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex 116 c1pi6A_ not modelled 99.0 12 PDB header:protein binding Chain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form 117 c2pm7B_ not modelled 99.0 8 PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec13; PDBTitle: crystal structure of yeast sec13/31 edge element of the2 copii vesicular coat, selenomethionine version 118 d1erja_ not modelled 99.0 11 Fold:7-bladed beta-propeller Superfamily:WD40 repeat-like Family:WD40-repeat 119 d1ijqa1 not modelled 98.9 15 Fold:6-bladed beta-propeller Superfamily:YWTD domain Family:YWTD domain 120 c2p9wA_ not modelled 98.9 12 PDB header:allergen Chain: A: PDB Molecule:mal s 1 allergenic protein; PDBTitle: crystal structure of the major malassezia sympodialis allergen mala s2 1

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0