BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (77 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q9JMS6 Uncharacterized protein yuaN n=1 Tax=Escherichia... 98 9e-20 UniRef50_Q9F571 YaiB protein n=5 Tax=Escherichia coli RepID=Q9F5... 85 4e-16 UniRef50_UPI0001BCF39F hypothetical protein EscherichiacoliO157_... 80 2e-14 UniRef50_B1VJ90 Putative uncharacterized protein n=6 Tax=Enterob... 40 0.017 >UniRef50_Q9JMS6 Uncharacterized protein yuaN n=1 Tax=Escherichia coli K-12 RepID=YUAN_ECOLI Length = 77 Score = 97.8 bits (242), Expect = 9e-20, Method: Composition-based stats. Identities = 77/77 (100%), Positives = 77/77 (100%) Query: 1 MVRYHGEFTYYVYQQSGRYFFCKKLTKKRDTSNCNHLHIIRELSFNEDELELIDFSTDGL 60 MVRYHGEFTYYVYQQSGRYFFCKKLTKKRDTSNCNHLHIIRELSFNEDELELIDFSTDGL Sbjct: 1 MVRYHGEFTYYVYQQSGRYFFCKKLTKKRDTSNCNHLHIIRELSFNEDELELIDFSTDGL 60 Query: 61 DANDKEIIRGMIDELKK 77 DANDKEIIRGMIDELKK Sbjct: 61 DANDKEIIRGMIDELKK 77 >UniRef50_Q9F571 YaiB protein n=5 Tax=Escherichia coli RepID=Q9F571_ECOLX Length = 86 Score = 85.4 bits (210), Expect = 4e-16, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Query: 1 MVRYHGEFTYYVYQQSGRYFFCKKLTKKRD----TSNCNHLHIIRELSFNEDELELIDFS 56 M G+ YY+ ++ + K++ + + +L F+E + IDF+ Sbjct: 1 MKIRKGDRQYYLNKEGDTFHLVKRVKTFSKSATLGKTKATVKTVADLVFHEKAFDTIDFA 60 Query: 57 TDGLDANDKEIIRGMIDELKK 77 +DGL NDKEII MI E+ + Sbjct: 61 SDGLRENDKEIIFMMIQEMSE 81 >UniRef50_UPI0001BCF39F hypothetical protein EscherichiacoliO157_17308 n=1 Tax=Escherichia coli O157:H7 str. FRIK2000 RepID=UPI0001BCF39F Length = 84 Score = 80.4 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 4/81 (4%) Query: 1 MVRYHGEFTYYVYQQSGRYFFCKKLTKKR----DTSNCNHLHIIRELSFNEDELELIDFS 56 M + G TYY+ +Y F KK++ D + EL FNE E+E IDF+ Sbjct: 1 MRKNKGRLTYYLEVIDKKYHFVKKISSYSKEFTDGKTKRTKRTLSELVFNESEVEAIDFT 60 Query: 57 TDGLDANDKEIIRGMIDELKK 77 +GL DK I+ M+ E K+ Sbjct: 61 KNGLRPVDKNILLTMVKEYKE 81 >UniRef50_B1VJ90 Putative uncharacterized protein n=6 Tax=Enterobacteriaceae RepID=B1VJ90_PROMH Length = 88 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%) Query: 1 MVRYHGEFTYYVYQQS-GRYFFCKKLTKKR----DTSNCNHLHIIRELSFNEDELELIDF 55 + + G+ TYY+ +++ Y KK+ + + + +L D+L +D+ Sbjct: 4 IRKNKGDVTYYLSRENNDSYRLIKKIKARATHLVKDGHKTTKVTLSDLLLTHDQLYNLDY 63 Query: 56 STDGLDANDKEIIRGMIDEL 75 S +GL A+DK I +I E Sbjct: 64 SLNGLRADDKATIELLIGEF 83 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9JMS6 Uncharacterized protein yuaN n=1 Tax=Escherichia... 98 9e-20 UniRef50_Q9F571 YaiB protein n=5 Tax=Escherichia coli RepID=Q9F5... 85 4e-16 UniRef50_UPI0001BCF39F hypothetical protein EscherichiacoliO157_... 80 2e-14 Sequences not found previously or not previously below threshold: UniRef50_B1VJ90 Putative uncharacterized protein n=6 Tax=Enterob... 40 0.017 CONVERGED! >UniRef50_Q9JMS6 Uncharacterized protein yuaN n=1 Tax=Escherichia coli K-12 RepID=YUAN_ECOLI Length = 77 Score = 97.8 bits (242), Expect = 9e-20, Method: Composition-based stats. Identities = 77/77 (100%), Positives = 77/77 (100%) Query: 1 MVRYHGEFTYYVYQQSGRYFFCKKLTKKRDTSNCNHLHIIRELSFNEDELELIDFSTDGL 60 MVRYHGEFTYYVYQQSGRYFFCKKLTKKRDTSNCNHLHIIRELSFNEDELELIDFSTDGL Sbjct: 1 MVRYHGEFTYYVYQQSGRYFFCKKLTKKRDTSNCNHLHIIRELSFNEDELELIDFSTDGL 60 Query: 61 DANDKEIIRGMIDELKK 77 DANDKEIIRGMIDELKK Sbjct: 61 DANDKEIIRGMIDELKK 77 >UniRef50_Q9F571 YaiB protein n=5 Tax=Escherichia coli RepID=Q9F571_ECOLX Length = 86 Score = 85.4 bits (210), Expect = 4e-16, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Query: 1 MVRYHGEFTYYVYQQSGRYFFCKKLTKKRD----TSNCNHLHIIRELSFNEDELELIDFS 56 M G+ YY+ ++ + K++ + + +L F+E + IDF+ Sbjct: 1 MKIRKGDRQYYLNKEGDTFHLVKRVKTFSKSATLGKTKATVKTVADLVFHEKAFDTIDFA 60 Query: 57 TDGLDANDKEIIRGMIDELKK 77 +DGL NDKEII MI E+ + Sbjct: 61 SDGLRENDKEIIFMMIQEMSE 81 >UniRef50_UPI0001BCF39F hypothetical protein EscherichiacoliO157_17308 n=1 Tax=Escherichia coli O157:H7 str. FRIK2000 RepID=UPI0001BCF39F Length = 84 Score = 80.4 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 4/81 (4%) Query: 1 MVRYHGEFTYYVYQQSGRYFFCKKLTKKR----DTSNCNHLHIIRELSFNEDELELIDFS 56 M + G TYY+ +Y F KK++ D + EL FNE E+E IDF+ Sbjct: 1 MRKNKGRLTYYLEVIDKKYHFVKKISSYSKEFTDGKTKRTKRTLSELVFNESEVEAIDFT 60 Query: 57 TDGLDANDKEIIRGMIDELKK 77 +GL DK I+ M+ E K+ Sbjct: 61 KNGLRPVDKNILLTMVKEYKE 81 >UniRef50_B1VJ90 Putative uncharacterized protein n=6 Tax=Enterobacteriaceae RepID=B1VJ90_PROMH Length = 88 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%) Query: 1 MVRYHGEFTYYVYQQS-GRYFFCKKLTKKR----DTSNCNHLHIIRELSFNEDELELIDF 55 + + G+ TYY+ +++ Y KK+ + + + +L D+L +D+ Sbjct: 4 IRKNKGDVTYYLSRENNDSYRLIKKIKARATHLVKDGHKTTKVTLSDLLLTHDQLYNLDY 63 Query: 56 STDGLDANDKEIIRGMIDEL 75 S +GL A+DK I +I E Sbjct: 64 SLNGLRADDKATIELLIGEF 83 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.324 0.141 0.352 Lambda K H 0.267 0.0420 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 260,231,414 Number of Sequences: 3077464 Number of extensions: 7586678 Number of successful extensions: 31946 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 31934 Number of HSP's gapped (non-prelim): 8 length of query: 77 length of database: 1,040,396,356 effective HSP length: 48 effective length of query: 29 effective length of database: 892,678,084 effective search space: 25887664436 effective search space used: 25887664436 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 87 (38.1 bits)