18/01/2012 16:26:09 : INFO  : Run start: Wed Jan 18 16:26:09 GMT 2012
18/01/2012 16:26:10 : INFO  : Initialised job
18/01/2012 16:26:10 : INFO  : Renaming log file 'phyre2_20120118_162609.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/fa545f9fb0146d0c/phyre_20120118_162609.log'
18/01/2012 16:26:10 : INFO  : Initialised job:
Sequence
>batch____
MRKNNTAIIFGSLFFSCSVMAANGTLAPTVVPMVNGGQASIAISNTSPNLFTVPGDRIIA
VNSLDGALTNNEQTASGGVVVATVNKKPFTFILETERGLNLSIQAVPREGAGRTIQLVSD
LRGTGEEAGAWETSTPYESLLVTISQAVRGGKLPAGWYQVPVTKETLQAPAGLSSVADAV
WTGNHLKMVRFAVENKTLSALNIRESDFWQPGTRAVMFSQPASQLLAGARMDVYVIRDGE
GN

18/01/2012 16:26:10 : INFO  : Checked sequence
18/01/2012 16:26:10 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 16:26:10 : INFO  : PSI-BLAST 3 iterations
18/01/2012 16:27:16 : INFO  : PSI-BLAST 5 iterations
18/01/2012 16:28:14 : INFO  : Finished PSI-BLAST
18/01/2012 16:28:14 : INFO  : Running Buildali to generate a3m file
18/01/2012 16:31:00 : INFO  : Converting to HMM
18/01/2012 16:31:00 : INFO  : Calibrating HMM
18/01/2012 16:31:06 : INFO  : Searching HMM database
18/01/2012 16:35:30 : INFO  : Finished buildali
18/01/2012 16:35:30 : INFO  : Predicting secondary structure
18/01/2012 16:35:31 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 16:35:31 : INFO  : Predicting Disordered regions
18/01/2012 16:35:31 : INFO  : Predicted Disorder (Disopred)
18/01/2012 16:35:31 : INFO  : Running memsat_svm check
18/01/2012 16:38:10 : INFO  : Globular protein
18/01/2012 16:38:10 : INFO  : Predicted Transmembrane (memsat_svm) ID 'fa545f9fb0146d0c'
18/01/2012 16:38:10 : INFO  : Initialising fold library search
18/01/2012 16:38:10 : INFO  : Initialised search input
18/01/2012 16:38:10 : INFO  : Building Ensemble models
18/01/2012 16:38:11 : INFO  : Building hh.c3cfuA_.model.1.pdb
18/01/2012 16:38:11 : INFO  : Building hh.d1l4ia1.model.2.pdb
18/01/2012 16:38:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/fa545f9fb0146d0c/hh.d1l4ia1.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/fa545f9fb0146d0c/d1l4ia1.3.pdb
18/01/2012 16:38:11 : INFO  : Building c3cfuA_.1.pdb
18/01/2012 16:38:12 : INFO  : Building c2qsvA_.2.pdb
18/01/2012 16:38:12 : INFO  : Building d1l4ia1.3.pdb
18/01/2012 16:38:12 : INFO  : Building d3bwuc1.4.pdb
18/01/2012 16:38:13 : INFO  : Building d1p5va1.5.pdb
18/01/2012 16:38:13 : INFO  : Building c3jt0B_.6.pdb
18/01/2012 16:38:14 : INFO  : Building c1so9A_.7.pdb
18/01/2012 16:38:14 : INFO  : Building d1so9a_.8.pdb
18/01/2012 16:38:14 : INFO  : Building c1yewI_.9.pdb
18/01/2012 16:38:15 : INFO  : Building c3rgbA_.10.pdb
18/01/2012 16:38:15 : INFO  : Building c2lllA_.11.pdb
18/01/2012 16:38:16 : INFO  : Building d2vzsa2.12.pdb
18/01/2012 16:38:16 : INFO  : Building d1ifra_.13.pdb
18/01/2012 16:38:16 : INFO  : Building c1z9sA_.14.pdb
18/01/2012 16:38:17 : INFO  : Building d2bsya2.15.pdb
18/01/2012 16:38:17 : INFO  : Building c1l4iA_.16.pdb
18/01/2012 16:38:17 : INFO  : Building d2j2za1.17.pdb
18/01/2012 16:38:18 : INFO  : Building c2h6oA_.18.pdb
18/01/2012 16:38:18 : INFO  : Building d1ivta_.19.pdb
18/01/2012 16:38:19 : INFO  : Building d1vyqa1.20.pdb
18/01/2012 16:38:20 : INFO  : Finished HH model building
18/01/2012 16:38:20 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 16:38:26 : INFO  : html domain output complete ID 'fa545f9fb0146d0c'
18/01/2012 16:44:59 : INFO  : Run end  : Wed Jan 18 16:44:59 GMT 2012
