Phyre 2 Results for P41066

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Email | l.a.kelley@imperial.ac.uk
Description | P41066
Date | Thu Jan 5 12:01:23 GMT 2012
Unique Job ID | fa545f9fb0146d0c

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c3cfuA_
Top template information
PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562
Confidence and coverage
Confidence: | 82.1% | Coverage: | 24%
57 residues ( 24% of your sequence) have been modelled with 82.1% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | R | K | N | N | T | A | I | I | F | G | S | L | F | F | S | C | S | V | M | A | A | N | G | T | L | A | P | T | V | V | P | M | V | N | G | G | Q | A | S | I | A | I | S | N | T | S | P | N | L | F | T | V | P | G | D | R | I | I | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  | ? |  | ? | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | N | S | L | D | G | A | L | T | N | N | E | Q | T | A | S | G | G | V | V | V | A | T | V | N | K | K | P | F | T | F | I | L | E | T | E | R | G | L | N | L | S | I | Q | A | V | P | R | E | G | A | G | R | T | I | Q | L | V | S | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? |  | ? | ? | ? | ? |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | R | G | T | G | E | E | A | G | A | W | E | T | S | T | P | Y | E | S | L | L | V | T | I | S | Q | A | V | R | G | G | K | L | P | A | G | W | Y | Q | V | P | V | T | K | E | T | L | Q | A | P | A | G | L | S | S | V | A | D | A | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | W | T | G | N | H | L | K | M | V | R | F | A | V | E | N | K | T | L | S | A | L | N | I | R | E | S | D | F | W | Q | P | G | T | R | A | V | M | F | S | Q | P | A | S | Q | L | L | A | G | A | R | M | D | V | Y | V | I | R | D | G | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | .
Sequence |  | G | N
Secondary structure |  |  |
SS confidence |  |  |
Disorder |  | ? | ?
Disorder confidence |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3cfuA_ |

### PDB 3cfu chain A

Region: 182 - 238
Aligned: 57
Modelled: 57
Confidence: 82.1%
Identity: 11%
PDB header:lipoprotein
Chain: A: PDB Molecule:uncharacterized lipoprotein yjha;
PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562

Phyre2
2 |
| c2qsvA_ |

### PDB 2qsv chain A

Region: 189 - 235
Aligned: 44
Modelled: 47
Confidence: 61.5%
Identity: 11%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83

Phyre2
3 |
| d1l4ia1 |

### PDB 1l4i chain A domain 1

Region: 172 - 242
Aligned: 71
Modelled: 71
Confidence: 58.3%
Identity: 18%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2
4 |
| d3bwuc1 |

### PDB 3bwu chain C domain 1

Region: 172 - 242
Aligned: 71
Modelled: 71
Confidence: 55.4%
Identity: 13%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2
5 |
| d1p5va1 |

### PDB 1p5v chain A domain 1

Region: 169 - 241
Aligned: 68
Modelled: 73
Confidence: 46.6%
Identity: 15%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2
6 |
| c3jt0B_ |

### PDB 3jt0 chain B

Region: 185 - 234
Aligned: 50
Modelled: 50
Confidence: 41.5%
Identity: 10%
PDB header:structural protein
Chain: B: PDB Molecule:lamin-b1;
PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a

Phyre2
7 |
| c1so9A_ |

### PDB 1so9 chain A

Region: 184 - 236
Aligned: 53
Modelled: 53
Confidence: 39.6%
Identity: 15%
PDB header:metal transport
Chain: A: PDB Molecule:cytochrome c oxidase assembly protein ctag;
PDBTitle: solution structure of apocox11, 30 structures

Phyre2
8 |
| d1so9a_ |

### PDB 1so9 chain A

Region: 184 - 236
Aligned: 53
Modelled: 53
Confidence: 39.6%
Identity: 15%
Fold: Ctag/Cox11
Superfamily: Ctag/Cox11
Family: Ctag/Cox11

Phyre2
9 |
| c1yewI_ |

### PDB 1yew chain I

Region: 189 - 239
Aligned: 48
Modelled: 51
Confidence: 27.5%
Identity: 23%
PDB header:oxidoreductase, membrane protein
Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit;
PDBTitle: crystal structure of particulate methane monooxygenase

Phyre2
10 |
| c3rgbA_ |

### PDB 3rgb chain A

Region: 189 - 239
Aligned: 48
Modelled: 51
Confidence: 27.5%
Identity: 23%
PDB header:oxidoreductase
Chain: A: PDB Molecule:methane monooxygenase subunit b2;
PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)

Phyre2
11 |
| c2lllA_ |

### PDB 2lll chain A

Region: 185 - 234
Aligned: 50
Modelled: 50
Confidence: 25.9%
Identity: 16%
PDB header:structural protein
Chain: A: PDB Molecule:lamin-b2;
PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a

Phyre2
12 |
| d2vzsa2 |

### PDB 2vzs chain A domain 2

Region: 170 - 241
Aligned: 72
Modelled: 72
Confidence: 23.9%
Identity: 13%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: beta-Galactosidase/glucuronidase domain
Family: beta-Galactosidase/glucuronidase domain

Phyre2
13 |
| d1ifra_ |

### PDB 1ifr chain A

Region: 185 - 234
Aligned: 50
Modelled: 50
Confidence: 22.9%
Identity: 16%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Lamin A/C globular tail domain
Family: Lamin A/C globular tail domain

Phyre2
14 |
| c1z9sA_ |

### PDB 1z9s chain A

Region: 172 - 241
Aligned: 70
Modelled: 70
Confidence: 22.5%
Identity: 13%
PDB header:chaperone/immune system
Chain: A: PDB Molecule:chaperone protein caf1m;
PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex

Phyre2
15 |
| d2bsya2 |

### PDB 2bsy chain A domain 2

Region: 152 - 205
Aligned: 49
Modelled: 54
Confidence: 21.5%
Identity: 10%
Fold: beta-clip
Superfamily: dUTPase-like
Family: dUTPase-like

Phyre2
16 |
| c1l4iA_ |

### PDB 1l4i chain A

Region: 172 - 242
Aligned: 71
Modelled: 71
Confidence: 18.8%
Identity: 17%
PDB header:chaperone
Chain: A: PDB Molecule:sfae protein;
PDBTitle: crystal structure of the periplasmic chaperone sfae

Phyre2
17 |
| d2j2za1 |

### PDB 2j2z chain A domain 1

Region: 181 - 241
Aligned: 60
Modelled: 61
Confidence: 16.7%
Identity: 17%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: PapD-like
Family: Pilus chaperone

Phyre2
18 |
| c2h6oA_ |

### PDB 2h6o chain A

Region: 52 - 112
Aligned: 50
Modelled: 57
Confidence: 14.5%
Identity: 28%
PDB header:viral protein
Chain: A: PDB Molecule:major outer envelope glycoprotein gp350;
PDBTitle: epstein barr virus major envelope glycoprotein

Phyre2
19 |
| d1ivta_ |

### PDB 1ivt chain A

Region: 191 - 234
Aligned: 44
Modelled: 44
Confidence: 13.6%
Identity: 16%
Fold: Immunoglobulin-like beta-sandwich
Superfamily: Lamin A/C globular tail domain
Family: Lamin A/C globular tail domain

Phyre2
20 |
| d1vyqa1 |

### PDB 1vyq chain A domain 1

Region: 151 - 204
Aligned: 53
Modelled: 54
Confidence: 13.4%
Identity: 8%
Fold: beta-clip
Superfamily: dUTPase-like
Family: dUTPase-like

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3cfuA_ |
|  | 82.1 | 11 | PDB header:lipoprotein Chain: A: PDB Molecule:uncharacterized lipoprotein yjha; PDBTitle: crystal structure of the yjha protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr562
2 | c2qsvA_ |
|  | 61.5 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83
3 | d1l4ia1 |
|  | 58.3 | 18 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone
4 | d3bwuc1 |
|  | 55.4 | 13 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone
5 | d1p5va1 |
|  | 46.6 | 15 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone
6 | c3jt0B_ |
|  | 41.5 | 10 | PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a
7 | c1so9A_ |
|  | 39.6 | 15 | PDB header:metal transport Chain: A: PDB Molecule:cytochrome c oxidase assembly protein ctag; PDBTitle: solution structure of apocox11, 30 structures
8 | d1so9a_ |
|  | 39.6 | 15 | Fold:Ctag/Cox11 Superfamily:Ctag/Cox11 Family:Ctag/Cox11
9 | c1yewI_ |
|  | 27.5 | 23 | PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase
10 | c3rgbA_ |
|  | 27.5 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
11 | c2lllA_ |
|  | 25.9 | 16 | PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a
12 | d2vzsa2 |
|  | 23.9 | 13 | Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain
13 | d1ifra_ |
|  | 22.9 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain
14 | c1z9sA_ |
|  | 22.5 | 13 | PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex
15 | d2bsya2 |
|  | 21.5 | 10 | Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like
16 | c1l4iA_ |
|  | 18.8 | 17 | PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae
17 | d2j2za1 |
|  | 16.7 | 17 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone
18 | c2h6oA_ |
|  | 14.5 | 28 | PDB header:viral protein Chain: A: PDB Molecule:major outer envelope glycoprotein gp350; PDBTitle: epstein barr virus major envelope glycoprotein
19 | d1ivta_ |
|  | 13.6 | 16 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain
20 | d1vyqa1 |
|  | 13.4 | 8 | Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like
21 | d2co7b1 |
| not modelled | 13.2 | 13 | Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone
22 | c2qlpC_ |
| not modelled | 13.2 | 12 | PDB header:hydrolase Chain: C: PDB Molecule:deoxycytidine triphosphate deaminase; PDBTitle: bifunctional dctp deaminase:dutpase from mycobacterium tuberculosis,2 apo form
23 | c2l0dA_ |
| not modelled | 12.3 | 14 | PDB header:cell adhesion Chain: A: PDB Molecule:cell surface protein; PDBTitle: solution nmr structure of putative cell surface protein ma_4588 (272-2 376 domain) from methanosarcina acetivorans, northeast structural3 genomics consortium target mvr254a
24 | d1rwha2 |
| not modelled | 11.9 | 12 | Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain
25 | c2k9uA_ |
| not modelled | 10.8 | 9 | PDB header:structural protein Chain: A: PDB Molecule:gamma filamin; PDBTitle: solution nmr structure of the filamin-migfilin complex
26 | c2bt1A_ |
| not modelled | 10.0 | 8 | PDB header:hydrolase Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase; PDBTitle: epstein barr virus dutpase in complex with a,b-imino dutp
27 | d1bqka_ |
| not modelled | 9.4 | 12 | Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like
28 | c3qbtH_ |
| not modelled | 8.8 | 10 | PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp
29 | d1ufga_ |
| not modelled | 8.8 | 14 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain
30 | c4a19Q_ |
| not modelled | 8.7 | 25 | PDB header:ribosome Chain: Q: PDB Molecule:60s ribosomal protein l36; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2.
31 | c3lnnB_ |
| not modelled | 7.9 | 17 | PDB header:metal transport Chain: B: PDB Molecule:membrane fusion protein (mfp) heavy metal cation efflux PDBTitle: crystal structure of zneb from cupriavidus metallidurans
32 | d1e42a1 |
| not modelled | 7.9 | 14 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like
33 | c2hjjA_ |
| not modelled | 7.7 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ykff; PDBTitle: solution nmr structure of protein ykff from escherichia coli.2 northeast structural genomics target er397.
34 | d2hjja1 |
| not modelled | 7.7 | 19 | Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:YkfF-like
35 | d1euwa_ |
| not modelled | 7.7 | 9 | Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like
36 | c2qxxA_ |
| not modelled | 7.5 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:deoxycytidine triphosphate deaminase; PDBTitle: bifunctional dctp deaminase: dutpase from mycobacterium tuberculosis2 in complex with dttp
37 | c3mbqC_ |
| not modelled | 7.5 | 12 | PDB header:hydrolase Chain: C: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase; PDBTitle: crystal structure of deoxyuridine 5-triphosphate nucleotidohydrolase2 from brucella melitensis, orthorhombic crystal form
38 | c3f6iB_ |
| not modelled | 7.4 | 7 | PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee
39 | d1t4wa_ |
| not modelled | 7.3 | 9 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:p53-like transcription factors Family:p53 DNA-binding domain-like
40 | c3rfrI_ |
| not modelled | 7.2 | 25 | PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
41 | c1pzdA_ |
| not modelled | 7.1 | 16 | PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:coatomer gamma subunit; PDBTitle: structural identification of a conserved appendage domain2 in the carboxyl-terminus of the copi gamma-subunit.
42 | c2oxgD_ |
| not modelled | 7.1 | 6 | PDB header:transport protein Chain: D: PDB Molecule:soxy protein; PDBTitle: the soxyz complex of paracoccus pantotrophus
43 | c2p9oB_ |
| not modelled | 7.0 | 16 | PDB header:hydrolase Chain: B: PDB Molecule:dutp pyrophosphatase-like protein; PDBTitle: structure of dutpase from arabidopsis thaliana
44 | d1rnja_ |
| not modelled | 7.0 | 9 | Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like
45 | d1w8oa1 |
| not modelled | 6.9 | 22 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes
46 | c3q48B_ |
| not modelled | 6.9 | 5 | PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone
47 | d1v05a_ |
| not modelled | 6.9 | 9 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain)
48 | c3ca9A_ |
| not modelled | 6.6 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:deoxyuridine triphosphatase; PDBTitle: evolution of chlorella virus dutpase
49 | d1hn0a3 |
| not modelled | 6.4 | 14 | Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain
50 | c3tqzA_ |
| not modelled | 6.3 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase; PDBTitle: structure of a deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)2 from coxiella burnetii
51 | c2brqA_ |
| not modelled | 6.3 | 11 | PDB header:structural protein Chain: A: PDB Molecule:filamin a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
52 | c2w0pB_ |
| not modelled | 6.3 | 11 | PDB header:cell adhesion Chain: B: PDB Molecule:filamin-a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the migfilin peptide
53 | c3iswB_ |
| not modelled | 6.3 | 11 | PDB header:structural protein Chain: B: PDB Molecule:filamin-a; PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
54 | c2e6jA_ |
| not modelled | 6.1 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein
55 | d1xs1a_ |
| not modelled | 6.0 | 19 | Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like
56 | d1sjna_ |
| not modelled | 5.9 | 17 | Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like
57 | c2brqB_ |
| not modelled | 5.9 | 11 | PDB header:structural protein Chain: B: PDB Molecule:filamin a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
58 | d1q5uz_ |
| not modelled | 5.8 | 20 | Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like
59 | c3ef4A_ |
| not modelled | 5.6 | 18 | PDB header:electron transport Chain: A: PDB Molecule:blue copper protein; PDBTitle: crystal structure of native pseudoazurin from2 hyphomicrobium denitrificans
60 | c1qunA_ |
| not modelled | 5.5 | 14 | PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli
61 | c1pyuD_ |
| not modelled | 5.5 | 18 | PDB header:lyase Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain; PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys
62 | c3sojA_ |
| not modelled | 5.3 | 38 | PDB header:cell adhesion Chain: A: PDB Molecule:pile; PDBTitle: francisella tularensis pilin pile
63 | c3fppB_ |
| not modelled | 5.3 | 15 | PDB header:membrane protein Chain: B: PDB Molecule:macrolide-specific efflux protein maca; PDBTitle: crystal structure of e.coli maca
64 | d1x1ia2 |
| not modelled | 5.2 | 15 | Fold:Hyaluronate lyase-like, C-terminal domain Superfamily:Hyaluronate lyase-like, C-terminal domain Family:Hyaluronate lyase-like, C-terminal domain
65 | c1x1jA_ |
| not modelled | 5.2 | 15 | PDB header:lyase Chain: A: PDB Molecule:xanthan lyase; PDBTitle: crystal structure of xanthan lyase (n194a) with a substrate.

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0