121 c2vagA_ Probab=96.93   E-value=0.02  Score=31.09  Aligned_columns=144  Identities=15%

Q ss_pred             CCCCEEEEECCCCCCCEEEEEE---ECCEEEEEEECCCC--CHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEE
Q ss_conf             8761045761787500379999---78901999828867--088999999999987414886676045206765502666
Q batch____        15 EGEIELRNELPGGEVHAAWHLR---YAGHDFFVKCDERE--LLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLV   89 (286)
Q Consensus        15 ~~~i~~v~~l~gG~~n~vy~v~---~~~~~~vlK~~~~~--~~~~~~~E~~~l~~l~~~~~~~~p~~~~~~~~~~~~~~~   89 (286)
                      ....+.++.|+.|....||++.   .++..|.||+-+..  ....+.+|+.+|+.+.....+.....+............
T Consensus        12 ~~~Y~i~~~LG~G~fG~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~Ei~il~~l~h~~~~~~~~~~~~~~~~~~~~~~   91 (330)
T c2vagA_          12 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI   91 (330)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred             CCCEEEEEEEEECCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEE
T ss_conf             78259999987628848999999767983999999839905689999999999984312223312220000123332000


Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             53037876530133222227999986431000123445555766445566566578877631048886564248994899
Q batch____        90 MDYLPPRPLDAHSAFILGQQIARLHQWSDQPQFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAAEKGIAFGNI  169 (286)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (286)
                      ..........                                                    ..................
T Consensus        92 ~~~~~~~~~~----------------------------------------------------~~~~~~~~~~~~~~~~~~  119 (330)
T c2vagA_          92 CIVFELLGLS----------------------------------------------------TYDFIKENGFLPFRLDHI  119 (330)
T ss_dssp             EEEEECCCCB----------------------------------------------------HHHHHHHTTTCCCCHHHH
T ss_pred             CCCCCCCCCC----------------------------------------------------CCCCCCCCCCCCHHHHHH
T ss_conf             0122112367----------------------------------------------------521112221110136565


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCEEE-EECC
Q ss_conf             99999989741111388678854787771689789279-9752
Q batch____       170 DAIVEHIQQRLASHQPQPSLLHGDLWSGNCALGPDGPY-IFDP  211 (286)
Q Consensus       170 ~~~~~~l~~~l~~~~~~~~liHgDl~~~Nil~~~~~~~-iID~  211 (286)
                      ......+...+...... ..+|.|+.+.|++++.++.. +.|+
T Consensus       120 ~~~~~~~~~~l~~~~~~-~~~~~d~~~~nil~~~~~~~~~~~~  161 (330)
T c2vagA_         120 RKMAYQICKSVNFLHSN-KLTHTDLKPENILFVQSDYTEAYNK  161 (330)
T ss_dssp             HHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESCCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHCC-CCCCCCCCCCEEEECCCCCEEECCC
T ss_conf             55554455555431101-2222345541589857886200034