BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (73 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI 154 7e-37 UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID... 62 7e-09 UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phag... 57 2e-07 UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepI... 55 9e-07 UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14... 55 1e-06 UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmone... 54 1e-06 UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region ... 53 3e-06 UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region ... 53 3e-06 UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 ... 53 3e-06 UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus ... 52 6e-06 UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4 52 8e-06 UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35... 51 9e-06 UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobac... 51 1e-05 UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger prot... 51 1e-05 UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 T... 50 2e-05 UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyce... 50 2e-05 UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Co... 49 4e-05 UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterob... 49 4e-05 UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q6... 49 5e-05 UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 ... 49 5e-05 UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 ... 49 7e-05 UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11... 48 8e-05 UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD 48 1e-04 UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger pro... 47 2e-04 UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 ... 47 3e-04 UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomyc... 45 5e-04 UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_... 45 5e-04 UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34... 45 6e-04 UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 ... 45 6e-04 UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 ... 45 7e-04 UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 ... 45 8e-04 UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 ... 45 9e-04 UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1... 45 9e-04 UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8... 45 0.001 UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=... 45 0.001 UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B... 44 0.001 UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=... 44 0.002 UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 ... 43 0.003 UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenter... 43 0.004 UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio ... 43 0.004 UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escheri... 42 0.005 UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax... 42 0.005 UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.006 UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.006 UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD 42 0.006 UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10... 42 0.008 UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomyc... 41 0.009 UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD 41 0.012 UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptosp... 41 0.013 UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 ... 41 0.015 UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB... 40 0.016 UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3... 40 0.017 UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 ... 40 0.020 UniRef50_B8GPY8 Transcriptional regulator, TraR/DksA family n=1 ... 40 0.026 UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobact... 40 0.028 UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acineto... 40 0.028 UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Helioba... 39 0.035 UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.037 UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingell... 39 0.043 UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromono... 39 0.044 UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.055 UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylo... 39 0.061 UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acineto... 39 0.061 UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM... 39 0.071 >UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI Length = 73 Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 73/73 (100%), Positives = 73/73 (100%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE Sbjct: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 Query: 61 CQAYQERQRKHYA 73 CQAYQERQRKHYA Sbjct: 61 CQAYQERQRKHYA 73 >UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF8_ECOSE Length = 74 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+DE + S L I RIRQ++ GI C+ CG P+P RR++ PGV CV Sbjct: 1 MADEIERFQSHQAMLEADRIQRIRQQLT--GISALFCDDCGAPVPAERRRLIPGVRKCVG 58 Query: 61 CQAYQERQRKHY 72 CQ QE Q +HY Sbjct: 59 CQEVQEIQARHY 70 >UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phage VP882 RepID=A2I309_9CAUD Length = 73 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQ-LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCV 59 MSD AD+A V EQ LT + NR + IN C+ C + IPEARR+ PGV LCV Sbjct: 1 MSDIADQAQDVIEQHLTASLANR-KHNINPAIPSAKHCDDCESEIPEARRRSLPGVRLCV 59 Query: 60 ECQAYQERQRKH 71 +C + QE + +H Sbjct: 60 DCASLQEIKGRH 71 >UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepID=B5EUP2_VIBFM Length = 89 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Query: 11 VTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 V EQ+ T INR R ++ C CG IPEARR I PGV LCVECQA ++ Sbjct: 11 VQEQIDATVIDAINRARSHLHHEHNDTNYCLECGELIPEARRNIIPGVELCVECQAKEDA 70 Query: 68 QRKHYA 73 + K ++ Sbjct: 71 REKAFS 76 >UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14 Tax=Proteobacteria RepID=B3QCL2_RHOPT Length = 73 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ DEA ++ E+ I R +I HG C CG PI EARRK P T CV+ Sbjct: 1 MTDQLDEAQALEERERDDCIARAAGQIKGHG--ATHCVVCGEPIDEARRKAMPSATRCVD 58 Query: 61 CQAYQERQRKHY 72 CQ +ER + + Sbjct: 59 CQESRERWSRSH 70 >UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 RepID=A9N2T0_SALPB Length = 84 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 2/75 (2%) Query: 1 MSDEADE--AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 MS++ ++ A + T T GIN IR K+++ +CE CG IP AR+ PGV LC Sbjct: 1 MSEDLNDEMAQASTAIFTQRGINAIRAKVHSLRPSKEICECCGADIPAARQLAVPGVELC 60 Query: 59 VECQAYQERQRKHYA 73 CQ +E+Q H A Sbjct: 61 AACQDVKEKQDVHRA 75 >UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region n=40 Tax=root RepID=CP80_BP186 Length = 75 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D A ++ I+ R + H + ++CE C PIPEARR+ PGV CV Sbjct: 1 MADAMDLAQLREQEDRERHISNARSR--RHEVSAFICEECDAPIPEARRRAIPGVQCCVT 58 Query: 61 CQAYQERQRKHY 72 CQ E + KHY Sbjct: 59 CQEILELKSKHY 70 >UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region n=4 Tax=Enterobacteriaceae RepID=C9XYU8_CROTZ Length = 74 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D E+ I++ R + A +LCE+C PIPEARR PGV LCV Sbjct: 1 MADVMDLVQQRVEEERERHIHKARSRQAAPS--RFLCESCNGPIPEARRAALPGVELCVT 58 Query: 61 CQAYQERQRKHY 72 CQ +E + HY Sbjct: 59 CQEIKELKSLHY 70 >UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 Tax=Enterobacteriaceae RepID=D2BWU8_DICD5 Length = 69 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M DE D EQ I + R K A ++ C CG PIPE RR+ PGVT C E Sbjct: 1 MPDEIDRDQEFNEQRLEEMIEQNRFK-PATTPSLHYCRLCGEPIPEKRRQTLPGVTTCTE 59 Query: 61 CQAYQERQRK 70 CQA ER+++ Sbjct: 60 CQAIIERRQR 69 >UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N7S5_PHOLL Length = 83 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Query: 1 MSDEADE--AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 MSD+ D+ A +VT I +R++++ + + CE CG+ I E RR+I PGV LC Sbjct: 1 MSDDIDDTRAQAVTAMWLEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQLC 60 Query: 59 VECQAYQE 66 V CQ E Sbjct: 61 VGCQEVAE 68 >UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4 Length = 69 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 36/65 (55%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D+ D A ++ T + R K + G+ ++ CE C +PIPEARR PGV LCV CQ Sbjct: 2 DDIDRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQ 61 Query: 63 AYQER 67 E+ Sbjct: 62 TRIEQ 66 >UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35 Tax=Proteobacteria RepID=A1B365_PARDP Length = 91 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 5/63 (7%) Query: 10 SVTEQL---TMTGINRIRQKINAHGI--PVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64 +V EQ+ T I R+R + G CE C PIPEARR+ PGV LCV+CQ+ Sbjct: 10 AVNEQIEVSTQEAIERMRLRNAQRGDRESAAFCEECDEPIPEARRRAIPGVRLCVDCQSG 69 Query: 65 QER 67 ++R Sbjct: 70 RDR 72 >UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobacteria RepID=YBII_ECOLI Length = 88 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 10 SVTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 +V EQ+ T I R R +I G + CE CG PIP+ARR+ PGV LC+ CQ ++ Sbjct: 10 AVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 68 Query: 67 RQRKHY 72 Q+ Y Sbjct: 69 LQKPAY 74 >UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family n=14 Tax=Enterobacteriaceae RepID=B5XPP1_KLEP3 Length = 69 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M DE D EQ I + R K + ++ C CG PIPE RR+ PG+T C E Sbjct: 1 MPDEIDRDQEFNEQRLEEMIEQSRFKPGS-APSLFHCRVCGKPIPEKRRQTLPGITTCKE 59 Query: 61 CQAYQER 67 CQ ER Sbjct: 60 CQEKLER 66 >UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N773_9GAMM Length = 69 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/35 (60%), Positives = 25/35 (71%) Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71 CE CG+PIPEARR+ +P T C ECQA ER K+ Sbjct: 34 CEDCGDPIPEARRRAYPSATRCTECQARHERHAKN 68 >UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyces RepID=Q9S2X6_STRCO Length = 239 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 21/33 (63%), Positives = 25/33 (75%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 LCE CGNPI +AR + FP TLCVEC+ QER+ Sbjct: 206 LCENCGNPIGKARMQAFPRATLCVECKQKQERR 238 >UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Conserved hypothetical phage protein) n=1 Tax=Yersinia enterocolitica subsp. enterocolitica 8081 RepID=A1JNK3_YERE8 Length = 74 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQK-INAHGIPVYLCEACGNPIPEARRKIFPGVTLCV 59 M D D A E L I + R K I A ++C +C IPE RR PGV CV Sbjct: 1 MPDLMDIAQERQEMLLAMQIAKARSKPITASA---FICASCEAEIPEQRRITVPGVIFCV 57 Query: 60 ECQAYQERQRKHY 72 CQ E ++KHY Sbjct: 58 ACQQLHEEKKKHY 70 >UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001827371 Length = 73 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 24/37 (64%) Query: 35 YLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71 +LCE C PIPEARR PGV LC+ CQ E + KH Sbjct: 33 FLCEECDAPIPEARRMAVPGVALCITCQEIAEMKNKH 69 >UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q65AH5_YERPE Length = 88 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 34/72 (47%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+DE D E L I RQ+ G CE CGN IP R++ PGV C E Sbjct: 15 MADELDLLQEQDELLNQLHIQAARQRSCLEGKSRKRCECCGNRIPLRRQQAIPGVRTCTE 74 Query: 61 CQAYQERQRKHY 72 CQ E ++K Y Sbjct: 75 CQRVLEIRQKQY 86 >UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 Tax=Proteobacteria RepID=B8FC44_DESAA Length = 69 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M D D A T I R + + + C+ CG+PIPEARRK PG T C++ Sbjct: 1 MPDPTDRAQEAAADYTRFSIEAARSRGSQSTL--ADCQDCGDPIPEARRKAVPGCTRCLD 58 Query: 61 CQAYQERQR 69 CQ E++R Sbjct: 59 CQETYEQRR 67 >UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KGB6_PECWW Length = 79 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 1 MSDEADE--AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 MS + D+ A + TEQL + ++ I + ++ I C+ACGN IPEARR PGV LC Sbjct: 1 MSHDLDDEMAMATTEQLLQSSLSLILRNVHNGRISNTCCDACGNEIPEARRLAVPGVELC 60 Query: 59 VECQAYQERQRK 70 V CQ +E K Sbjct: 61 VGCQEVEEHLTK 72 >UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11 Tax=Proteobacteria RepID=A4XQ42_PSEMY Length = 88 Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Query: 10 SVTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 +V EQ+ + I R R ++ G + CE C IPEARR+ PGV LCV+CQA + Sbjct: 10 AVQEQIDSSIEDAIARARSQL-PKGESLRHCEECDAVIPEARRQAIPGVRLCVKCQAEHD 68 Query: 67 RQRKHYA 73 R+ Y+ Sbjct: 69 RENAAYS 75 >UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD Length = 75 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 +D D A ++++ ++RI++ G+ + C CG+ IP+ RR++ GVT CV+C Sbjct: 6 ADPLDRAAALSQAHLEVSLSRIKK---FEGVSAHECVECGSEIPKKRRELLQGVTDCVDC 62 Query: 62 QAYQERQRKHY 72 A +E K+Y Sbjct: 63 AAIKETLSKNY 73 >UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger protein, DksA/TraR family n=8 Tax=root RepID=B8F4E6_HAEPS Length = 72 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M D+ D A + E+ + ++R K A + CE C PIPEARR+ G T C++ Sbjct: 1 MKDQIDRANELAEKEREFALAKLRNKPTA--CSLIHCEDCDEPIPEARRQNVQGCTRCID 58 Query: 61 CQAYQERQRKHY 72 CQ E ++K Y Sbjct: 59 CQQIYEYKQKGY 70 >UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4E4_9DELT Length = 66 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 33/66 (50%), Gaps = 7/66 (10%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M EA+E + L+M G R A C CG PIPE RR PGVTLCV Sbjct: 7 MGHEAEE-LARKAALSMAGTRR------ADAPSRETCAECGAPIPEPRRVAVPGVTLCVA 59 Query: 61 CQAYQE 66 CQA +E Sbjct: 60 CQAAKE 65 >UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomycetales RepID=A4XDN2_SALTO Length = 139 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 8 AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 A S+ E++T + R ++++ G CE CGNPIP R FP TLCV C+ ER Sbjct: 83 ANSILERITQ--VERALERLDEGGYG--WCERCGNPIPVERLAAFPSATLCVTCKQLAER 138 Query: 68 Q 68 + Sbjct: 139 R 139 >UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_BPD3 Length = 67 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 27/45 (60%) Query: 22 RIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 R+ ++ G +Y CE CG IP ARR++ PGV C+ CQ Y E Sbjct: 18 RLYSRVKYVGESLYECEDCGEEIPVARRELVPGVRKCLSCQEYLE 62 >UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34 homolog n=7 Tax=Haemophilus influenzae RepID=Q4QK09_HAEI8 Length = 71 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D A + E + + R + CE C PIPE RR++ GVT CV Sbjct: 1 MTDQFDRAQQLEEMQREIALKKHR---TFKAVSRLYCEDCDAPIPEKRRQMIQGVTRCVT 57 Query: 61 CQAYQERQRKHY 72 CQ E Q++++ Sbjct: 58 CQQRFEIQQRNF 69 >UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 Tax=Chromobacterium group RepID=B9Z318_9NEIS Length = 68 Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%) Query: 25 QKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 + + G+ CE CG PIP AR+ PG T CV+CQ +ER R+ Sbjct: 23 RDLVGRGVSATECEDCGTPIPPARQLAAPGCTRCVDCQNRRERPRR 68 >UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria RepID=A4JDG9_BURVG Length = 77 Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLC--EACGNPIPEARRKIFPGVTLCVE 60 D+ D A + EQ I + +++ C EACG PIPE RR+ G CVE Sbjct: 2 DDFDHASDIEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVE 61 Query: 61 CQAYQE 66 CQ +E Sbjct: 62 CQERRE 67 >UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Geobacter sp. M18 RepID=C6MQY5_9DELT Length = 74 Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Query: 1 MSDEADEAYSVTEQ-LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCV 59 M+DE D A ++E+ L + K A + CE CG PIPE RR+ PG T CV Sbjct: 1 MADEIDLAQEISERHLEAALAGHLDHKPAAESL--THCEECGRPIPEGRRQAQPGCTRCV 58 Query: 60 ECQA 63 CQ+ Sbjct: 59 RCQS 62 >UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 Tax=Serratia proteamaculans 568 RepID=A8GA41_SERP5 Length = 73 Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 6/50 (12%) Query: 29 AHGIPVY------LCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72 AH PV C C IPE RR+ PGV+ CV CQ E Q++H+ Sbjct: 21 AHARPVVTQASAQFCADCDGEIPEVRRRAIPGVSRCVACQEVSEAQQRHF 70 >UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q125W5_POLSJ Length = 79 Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Query: 30 HGIPVYLC--EACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 G+ C + CG PIPE RRK PGV CVECQ E++ Sbjct: 36 QGLSALRCLYDGCGEPIPEQRRKALPGVKFCVECQQRLEKK 76 >UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8_PSEA8 Length = 66 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 23/32 (71%) Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 CE CG PIP+ARR+ PG + C++CQ ER+ Sbjct: 35 CEDCGEPIPQARRRAAPGCSRCIDCQDRHERR 66 >UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=Pseudomonas syringae RepID=A9QS46_PSESX Length = 68 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D A + L + + R +I + CE C NPIPE RR G C+ Sbjct: 1 MADDIDRATEQAQYLLDVALFKHR-RIPTSLVSSQFCEDCDNPIPEPRRAAIVGCETCIH 59 Query: 61 CQAYQERQR 69 CQ+ +E++R Sbjct: 60 CQSLREQRR 68 >UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B4F0L8_PROMH Length = 73 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MS E D A ++ L I + + G+ + CE CG IPE RR G T C + Sbjct: 1 MSKEMDLACEQSQLLLDKQIKAVTGRYI--GVSAFECEDCGREIPEKRRIAVMGCTRCAD 58 Query: 61 CQAYQERQRKHY 72 CQ E + KHY Sbjct: 59 CQTVYELKSKHY 70 >UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Propionibacterium acnes RepID=D1YA14_PROAC Length = 159 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 24/32 (75%) Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 CE+CG PI +AR + FP T+CV+C+ QER+ Sbjct: 128 CESCGEPIGKARLQAFPRATMCVKCKQRQERR 159 >UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 Tax=Streptomyces RepID=D1X2L9_9ACTO Length = 248 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 23/33 (69%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 LCE CG PI +AR + FP TLCVE + QER+ Sbjct: 215 LCEICGKPIGKARMQAFPRATLCVEDKQKQERR 247 >UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenterica_13393 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190AE5D Length = 75 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 23/30 (76%) Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQE 66 C CG+ IP++RR+ PGV+LC+ CQ ++E Sbjct: 40 CRDCGDEIPDSRRESIPGVSLCMYCQEWRE 69 >UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7N392_VIBHB Length = 72 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGI-NRI-RQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 M D D A + QLT + N++ R K A C CG+PIPEARR+ G C Sbjct: 1 MPDVIDHACDIEAQLTEVALANQLARAKPKASRESAQECGECGDPIPEARRQHMTGCQYC 60 Query: 59 VECQAYQERQRK 70 CQ+ E+ ++ Sbjct: 61 THCQSDLEKMKR 72 >UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escherichia blattae RepID=Q3ZL39_ESCBL Length = 76 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71 E+L + R+++ ++G C C PIP AR + P CV CQA +E +RKH Sbjct: 17 ERLLNKHLRRVKELPESYG----FCNDCEQPIPAARLQALPDAVTCVTCQAIREHRRKH 71 >UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826470 Length = 71 Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 24/46 (52%) Query: 26 KINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71 +IN + + CE CG IPE RR PG C ECQ+ E + K Sbjct: 23 RINRNAVSAERCEECGEDIPEPRRAAVPGCQTCSECQSVIELKNKQ 68 >UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WXU2_COMTE Length = 76 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 18/31 (58%), Positives = 23/31 (74%) Query: 39 ACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 ACG IPEARRK PG CV+C++ QER++ Sbjct: 42 ACGALIPEARRKAVPGCQRCVKCESAQERKK 72 >UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 Tax=Shewanella halifaxensis HAW-EB4 RepID=B0TKU6_SHEHH Length = 68 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Query: 3 DEADEAYSVTEQ-LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 DE DE+ V + L R + + A Y C CG IPE RR+ GV LC++C Sbjct: 2 DEGDESVRVQARALNQYLAGRATKLLVAKASASY-CARCGEDIPEPRRQAVKGVQLCIDC 60 Query: 62 QAYQERQR 69 Q ER++ Sbjct: 61 QTLSERKQ 68 >UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD Length = 68 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYL-CEACGNPIPEARRKIFPGVTLCVEC 61 D D+A E + + Q+ N P L CE CG IPEARR+ PG C+ C Sbjct: 2 DVIDQANERAENMVQAALA---QRTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISC 58 Query: 62 QAYQE 66 Q +E Sbjct: 59 QELRE 63 >UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10 Tax=Actinomycetales RepID=A6WCW5_KINRD Length = 159 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%) Query: 31 GIPVY-LCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 G VY +CE+C P+ +AR + FP VTLCV C++ ER+ Sbjct: 121 GSGVYGVCESCDGPVGKARLQAFPRVTLCVRCKSRGERR 159 >UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomycetales RepID=A1SL71_NOCSJ Length = 283 Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 +CE+CGNPI + R FP TLC+ C+ +ER+ Sbjct: 251 VCESCGNPIGKMRLMAFPRATLCMTCKQREERR 283 >UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD Length = 74 Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 23/47 (48%) Query: 26 KINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72 + HG C CG PIP ARR P T C ECQ E++R Y Sbjct: 26 RAQCHGAGAEECVECGEPIPAARRACVPYATRCTECQGRFEQRRTGY 72 >UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum RepID=A3EVE8_9BACT Length = 52 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 24/50 (48%) Query: 23 IRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72 + ++ G C CG IP RR++ PGV C+ CQ +ER Y Sbjct: 2 LSSRLQPKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQKERERSSMEY 51 >UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 Tax=Deltaproteobacteria RepID=A1AL35_PELPD Length = 118 Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Query: 20 INRIRQKINAHGIPVY-LCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71 IN+I++ ++ + +CE CG+ I EAR K+ P TLC+ C+ E++ K Sbjct: 65 INKIKEALSRIDSGEFGICEECGDEIGEARLKVRPVTTLCINCKLEAEKKEKR 117 >UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GH83_9ACTO Length = 232 Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Query: 8 AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 A E+L T +R +G+ CE CG PI +AR + FP LCV+C+ ER Sbjct: 176 AAGSRERLEQTERALLRMDAGTYGV----CENCGKPIGKARMQAFPHAILCVDCKQKSER 231 Query: 68 Q 68 + Sbjct: 232 R 232 >UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3 Tax=Shewanella RepID=Q0HYS5_SHESR Length = 68 Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 21/32 (65%) Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 C CG+ IPE RR+ GV LCV CQ ++E Q Sbjct: 37 CAECGDEIPEGRRQAILGVRLCVTCQTWRESQ 68 >UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 Tax=Roseiflexus RepID=A5UPY9_ROSS1 Length = 121 Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 +C CG PIP R + P TLCV CQ+ +ER R+ Sbjct: 86 ICADCGEPIPIERLEALPYATLCVRCQSTRERARR 120 >UniRef50_B8GPY8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPY8_THISH Length = 114 Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 19/31 (61%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 +C ACG IPEAR KI P LC C + QE Sbjct: 82 ICAACGEAIPEARLKILPQARLCAACASRQE 112 >UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobacteria RepID=Q2LSS1_SYNAS Length = 150 Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 21/35 (60%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 LCE CG PI E R P TLC++C+ QE+ K Sbjct: 112 LCEVCGGPISEKRLMARPVTTLCIDCKTKQEKLEK 146 >UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii AYE RepID=B0V602_ACIBY Length = 72 Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust. Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%) Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72 CE CGN IP R++ + VTLCVEC+ QE+ K Y Sbjct: 37 CEECGNDIPIERQR-YGSVTLCVECKNTQEKLSKRY 71 >UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TGP7_HELMI Length = 238 Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust. Identities = 15/31 (48%), Positives = 21/31 (67%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 +CE C IP+AR P TLC+ECQ+++E Sbjct: 90 ICERCHQKIPDARMAAMPTATLCIECQSHEE 120 >UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QCE7_CATAD Length = 275 Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 23/33 (69%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 +CE+CG P+ + R + FP TLC+ C+ QER+ Sbjct: 243 VCESCGEPVGKYRLQAFPRATLCMSCKQKQERR 275 >UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GGH6_9NEIS Length = 75 Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 35/73 (47%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MS + D+A + E+ ++ ++ C+ CG+ IPEARR+ G C+E Sbjct: 1 MSRQIDQACELEERYRQAALDYQAKQNYPQRPSASHCQDCGDIIPEARRRAALGCQYCIE 60 Query: 61 CQAYQERQRKHYA 73 CQ E + YA Sbjct: 61 CQERIEHAKAQYA 73 >UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromonosporaceae RepID=A4X6U9_SALTO Length = 132 Score = 39.3 bits (90), Expect = 0.044, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 20/33 (60%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 CE CG IP R +IFP T CV C+ +ER+ Sbjct: 98 FCEGCGASIPVERLEIFPSATTCVTCKQTRERR 130 >UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AEE3_THECD Length = 114 Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust. Identities = 16/27 (59%), Positives = 17/27 (62%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQ 62 LCE CG PIPE R +I P CV CQ Sbjct: 81 LCEKCGKPIPEGRLEILPYARCCVSCQ 107 >UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4E4_METEA Length = 73 Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 28/67 (41%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D + E + IR + + C+ CG IP RR+ P CV Sbjct: 1 MADDVDMIQHLDEMAMDGKLAAIRSRTETTDLAPEDCDDCGGDIPMERRRAAPWTRRCVR 60 Query: 61 CQAYQER 67 CQ ER Sbjct: 61 CQTLAER 67 >UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acinetobacter RepID=B2I3M6_ACIBC Length = 66 Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 6/71 (8%) Query: 1 MSDEADEAYSVTEQLTMTGI-NRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCV 59 M+D D+A + L I NR R G C CG IPE RR+ GV C+ Sbjct: 1 MTDLIDKAQESADYLLQQEIANRCR----FEGESEKECVECGEEIPE-RRRALGGVKFCI 55 Query: 60 ECQAYQERQRK 70 ECQ ER+R+ Sbjct: 56 ECQTKLERKRR 66 >UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJK4_DESAH Length = 114 Score = 38.5 bits (88), Expect = 0.071, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIFPGVTLCVE 60 S +EA ++T++ + R +I G P + LC AC PIP AR I P LCV+ Sbjct: 51 SKSMNEAALKRARITLSKLERALARI---GSPDFGLCSACEEPIPFARLMILPETELCVK 107 Query: 61 C 61 C Sbjct: 108 C 108 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI 99 5e-20 UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus ... 77 2e-13 UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region ... 77 2e-13 UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B... 76 2e-13 UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Co... 76 3e-13 UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4 76 3e-13 UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger prot... 76 5e-13 UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region ... 75 6e-13 UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 ... 75 7e-13 UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q6... 74 1e-12 UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID... 74 1e-12 UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger pro... 74 1e-12 UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phag... 74 2e-12 UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterob... 72 4e-12 UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34... 71 1e-11 UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmone... 69 3e-11 UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=... 69 3e-11 UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 ... 69 5e-11 UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepI... 68 7e-11 UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD 67 1e-10 UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14... 67 2e-10 UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 ... 67 2e-10 UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobac... 66 3e-10 UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1... 66 5e-10 UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 ... 66 5e-10 UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11... 65 6e-10 UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 ... 65 8e-10 UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 ... 63 3e-09 UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_... 63 3e-09 UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35... 62 5e-09 UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 ... 61 1e-08 UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyce... 58 1e-07 UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8... 56 4e-07 UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomyc... 55 5e-07 UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=... 55 6e-07 UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 ... 55 9e-07 UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 T... 51 1e-05 Sequences not found previously or not previously below threshold: UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escheri... 63 2e-09 UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio ... 61 2e-08 UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=... 59 4e-08 UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=... 59 6e-08 UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax... 58 9e-08 UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingell... 57 1e-07 UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylo... 57 2e-07 UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas Rep... 57 2e-07 UniRef50_A7ZJE9 Phage/conjugal plasmid C-4 type zinc finger prot... 56 3e-07 UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD 55 9e-07 UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12... 54 1e-06 UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptosp... 54 1e-06 UniRef50_Q06424 Uncharacterized 8.2 kDa protein in gpA 5'region ... 54 2e-06 UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclass... 53 2e-06 UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acineto... 53 2e-06 UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acineto... 53 2e-06 UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB... 53 2e-06 UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiob... 53 3e-06 UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 ... 53 3e-06 UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD 53 4e-06 UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 ... 52 5e-06 UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family pr... 52 6e-06 UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum... 51 1e-05 UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenter... 51 1e-05 UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 ... 51 1e-05 UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomyc... 50 2e-05 UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 ... 50 2e-05 UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10... 50 2e-05 UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5... 50 3e-05 UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 ... 50 3e-05 UniRef50_C4LBC7 Transcriptional regulator, TraR/DksA family n=1 ... 49 3e-05 UniRef50_A5EYQ4 DksA-like zinc finger domain containing protein ... 49 4e-05 UniRef50_B3B1J8 Conserved domain protein n=5 Tax=Gammaproteobact... 49 4e-05 UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 ... 49 4e-05 UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsi... 49 4e-05 UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotom... 49 6e-05 UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,p... 48 8e-05 UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7... 48 8e-05 UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 ... 48 1e-04 UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria R... 48 1e-04 UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Helioba... 47 1e-04 UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 ... 47 1e-04 UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 ... 47 1e-04 UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2 ... 47 2e-04 UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1... 47 2e-04 UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacter... 47 2e-04 UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 ... 47 2e-04 UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclass... 47 2e-04 UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammapro... 47 2e-04 UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 ... 47 2e-04 UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 ... 47 2e-04 UniRef50_B9JYG7 DnaK suppressor protein n=2 Tax=Agrobacterium vi... 47 3e-04 UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemm... 47 3e-04 UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilu... 47 3e-04 UniRef50_A1F607 Conserved domain protein n=3 Tax=Vibrio cholerae... 46 3e-04 UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 ... 46 3e-04 UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID... 46 3e-04 UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3... 46 3e-04 UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacte... 46 4e-04 UniRef50_Q8EDR9 C4-type zinc finger protein, DksA/TraR family n=... 46 4e-04 UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromono... 46 4e-04 UniRef50_Q2SPX6 DnaK suppressor protein n=1 Tax=Hahella chejuens... 46 4e-04 UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n... 46 4e-04 UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 ... 46 4e-04 UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 ... 46 4e-04 UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera a... 46 4e-04 UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastop... 46 5e-04 UniRef50_P44221 Uncharacterized protein HI1497 n=3 Tax=Haemophil... 45 5e-04 UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YT... 45 5e-04 UniRef50_A4XZG1 Transcriptional regulator, TraR/DksA family n=1 ... 45 5e-04 UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1... 45 6e-04 UniRef50_Q2LQQ9 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 45 6e-04 UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7 ... 45 6e-04 UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordete... 45 7e-04 UniRef50_Q52PP5 Putative uncharacterized protein n=1 Tax=Xanthom... 45 8e-04 UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomon... 45 8e-04 UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 ... 45 8e-04 UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibr... 45 8e-04 UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1 ... 45 0.001 UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteo... 44 0.001 UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobact... 44 0.001 UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovib... 44 0.001 UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campy... 44 0.001 UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 ... 44 0.001 UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 ... 44 0.001 UniRef50_A4NCL4 Putative uncharacterized protein n=1 Tax=Haemoph... 44 0.001 UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1... 44 0.002 UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1... 44 0.002 UniRef50_C5S4P2 Putative uncharacterized protein n=2 Tax=Pasteur... 44 0.002 UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 ... 44 0.002 UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium... 44 0.002 UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 ... 44 0.002 UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 ... 44 0.002 UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR fa... 44 0.002 UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM... 44 0.002 UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces lim... 43 0.002 UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 ... 43 0.003 UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gamm... 43 0.003 UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=... 43 0.003 UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gr... 43 0.003 UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopi... 43 0.003 UniRef50_C9R760 Putative uncharacterized protein n=1 Tax=Aggrega... 43 0.004 UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1 ... 43 0.004 UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.004 UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253... 42 0.004 UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 ... 42 0.004 UniRef50_Q2W8C2 Putative uncharacterized protein n=1 Tax=Magneto... 42 0.005 UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria R... 42 0.006 UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3... 42 0.006 UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuens... 42 0.007 UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carbo... 42 0.007 UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificac... 42 0.007 UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobact... 42 0.008 UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 ... 42 0.008 UniRef50_C6D536 Transcriptional regulator, TraR/DksA family n=2 ... 42 0.008 UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1... 42 0.008 UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 ... 42 0.008 UniRef50_Q0EWC9 Putative uncharacterized protein n=1 Tax=Maripro... 41 0.009 UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 ... 41 0.009 UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 ... 41 0.009 UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candida... 41 0.009 UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 ... 41 0.010 UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=... 41 0.010 UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 ... 41 0.010 UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmati... 41 0.011 UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria... 41 0.011 UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 ... 41 0.012 UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 ... 41 0.012 UniRef50_A0RMM0 Transcriptional regulators, TraR/DksA family n=9... 41 0.013 UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 ... 41 0.013 UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 ... 41 0.013 UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Ther... 41 0.014 UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 ... 41 0.015 UniRef50_A8EWK7 DnaK suppressor protein DksA n=1 Tax=Arcobacter ... 40 0.016 UniRef50_B7J8S5 Putative uncharacterized protein n=1 Tax=Acidith... 40 0.016 UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 ... 40 0.017 UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Plancto... 40 0.018 UniRef50_A4G7K6 Putative uncharacterized protein n=1 Tax=Hermini... 40 0.019 UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 ... 40 0.020 UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 ... 40 0.020 UniRef50_B1I4J4 Transcriptional regulator, TraR/DksA family n=1 ... 40 0.021 UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 ... 40 0.022 UniRef50_A7HEW6 Transcriptional regulator, TraR/DksA family n=4 ... 40 0.024 UniRef50_A7HW84 Transcriptional regulator, TraR/DksA family n=68... 40 0.025 UniRef50_A4V7S0 Putative transcriptional regulator DnaK suppress... 40 0.025 UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1... 40 0.025 UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11... 40 0.025 UniRef50_UPI00016C3CE0 transcriptional regulators, TraR/DksA fam... 40 0.026 UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia Re... 40 0.026 UniRef50_C7LTL7 Transcriptional regulator, TraR/DksA family n=1 ... 40 0.026 UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 ... 40 0.027 UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3... 40 0.028 UniRef50_Q0AHN9 Transcriptional regulators, TraR/DksA family pro... 40 0.029 UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 ... 40 0.030 UniRef50_Q12EM6 Transcriptional regulators, TraR/DksA family n=6... 40 0.030 UniRef50_Q21SV6 Transcriptional regulators, TraR/DksA family n=5... 40 0.032 UniRef50_C6C0K2 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.034 UniRef50_D1UB56 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.034 UniRef50_D0LUD2 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.036 UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacte... 39 0.036 UniRef50_A3IED4 DnaK suppressor protein n=2 Tax=Bacillaceae RepI... 39 0.036 UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family pro... 39 0.037 UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1... 39 0.038 UniRef50_C0QW50 DNA-binding transcriptional regulator of transcr... 39 0.040 UniRef50_Q1AWF1 Transcriptional regulators, TraR/DksA family n=1... 39 0.040 UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.040 UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.041 UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 ... 39 0.042 UniRef50_Q39WX5 Transcriptional regulators, TraR/DksA family n=4... 39 0.042 UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax... 39 0.043 UniRef50_C0ZG84 Putative uncharacterized protein yteA n=1 Tax=Br... 39 0.043 UniRef50_A3RXC3 DnaK suppressor protein n=1 Tax=Ralstonia solana... 39 0.044 UniRef50_Q473A0 Zn-finger, prokaryotic DksA/TraR C4 type n=3 Tax... 39 0.045 UniRef50_C1I8K1 Putative uncharacterized protein n=1 Tax=Clostri... 39 0.046 UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 ... 39 0.046 UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.049 UniRef50_A1VGY3 Transcriptional regulator, TraR/DksA family n=4 ... 39 0.050 UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2 ... 39 0.050 UniRef50_Q2NBT1 Putative uncharacterized protein n=1 Tax=Erythro... 39 0.053 UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter Rep... 39 0.053 UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family ... 39 0.054 UniRef50_A6FZV7 Transcriptional regulator, TraR/DksA family prot... 39 0.054 UniRef50_C3XG00 DnaK suppressor protein n=1 Tax=Helicobacter bil... 39 0.058 UniRef50_A0LSA0 Transcriptional regulators, TraR/DksA family n=1... 39 0.060 UniRef50_A4BMT6 Putative uncharacterized protein n=1 Tax=Nitroco... 39 0.063 UniRef50_Q7MQQ3 Putative uncharacterized protein n=1 Tax=Wolinel... 39 0.065 UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydroge... 39 0.067 UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2... 39 0.070 UniRef50_A1VFA5 Transcriptional regulator, TraR/DksA family n=3 ... 39 0.071 UniRef50_B8J2D3 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.073 UniRef50_D2MJ83 Transcriptional regulator, TraR/DksA family n=1 ... 39 0.075 UniRef50_A4TVR6 DnaK suppressor protein n=3 Tax=Magnetospirillum... 38 0.076 UniRef50_B6R7R7 Transcriptional regulator, TraR/DksA family n=1 ... 38 0.085 UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobac... 38 0.087 >UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI Length = 73 Score = 98.6 bits (244), Expect = 5e-20, Method: Composition-based stats. Identities = 73/73 (100%), Positives = 73/73 (100%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE Sbjct: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 Query: 61 CQAYQERQRKHYA 73 CQAYQERQRKHYA Sbjct: 61 CQAYQERQRKHYA 73 >UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N7S5_PHOLL Length = 83 Score = 77.1 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 1 MSDEAD--EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 MSD+ D A +VT I +R++++ + + CE CG+ I E RR+I PGV LC Sbjct: 1 MSDDIDDTRAQAVTAMWLEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQLC 60 Query: 59 VECQAYQERQRK 70 V CQ E + Sbjct: 61 VGCQEVAEHWEQ 72 >UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region n=4 Tax=Enterobacteriaceae RepID=C9XYU8_CROTZ Length = 74 Score = 76.7 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D E+ I++ R + +LCE+C PIPEARR PGV LCV Sbjct: 1 MADVMDLVQQRVEEERERHIHKARSR--QAAPSRFLCESCNGPIPEARRAALPGVELCVT 58 Query: 61 CQAYQERQRKHY 72 CQ +E + HY Sbjct: 59 CQEIKELKSLHY 70 >UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B4F0L8_PROMH Length = 73 Score = 76.3 bits (186), Expect = 2e-13, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MS E D A ++ L I + + G+ + CE CG IPE RR G T C + Sbjct: 1 MSKEMDLACEQSQLLLDKQIKAVTGRYI--GVSAFECEDCGREIPEKRRIAVMGCTRCAD 58 Query: 61 CQAYQERQRKHY 72 CQ E + KHY Sbjct: 59 CQTVYELKSKHY 70 >UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Conserved hypothetical phage protein) n=1 Tax=Yersinia enterocolitica subsp. enterocolitica 8081 RepID=A1JNK3_YERE8 Length = 74 Score = 76.3 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M D D A E L I + R K ++C +C IPE RR PGV CV Sbjct: 1 MPDLMDIAQERQEMLLAMQIAKARSKPITA--SAFICASCEAEIPEQRRITVPGVIFCVA 58 Query: 61 CQAYQERQRKHY 72 CQ E ++KHY Sbjct: 59 CQQLHEEKKKHY 70 >UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4 Length = 69 Score = 76.3 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 37/68 (54%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D+ D A ++ T + R K + G+ ++ CE C +PIPEARR PGV LCV CQ Sbjct: 2 DDIDRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQ 61 Query: 63 AYQERQRK 70 E+ + Sbjct: 62 TRIEQLAR 69 >UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family n=14 Tax=Enterobacteriaceae RepID=B5XPP1_KLEP3 Length = 69 Score = 75.5 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M DE D EQ I + R K ++ C CG PIPE RR+ PG+T C E Sbjct: 1 MPDEIDRDQEFNEQRLEEMIEQSRFKP-GSAPSLFHCRVCGKPIPEKRRQTLPGITTCKE 59 Query: 61 CQAYQERQR 69 CQ ER Sbjct: 60 CQEKLERHS 68 >UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region n=40 Tax=root RepID=CP80_BP186 Length = 75 Score = 75.1 bits (183), Expect = 6e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D A ++ I+ R + + + ++CE C PIPEARR+ PGV CV Sbjct: 1 MADAMDLAQLREQEDRERHISNARSRRHE--VSAFICEECDAPIPEARRRAIPGVQCCVT 58 Query: 61 CQAYQERQRKHY 72 CQ E + KHY Sbjct: 59 CQEILELKSKHY 70 >UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 Tax=Enterobacteriaceae RepID=D2BWU8_DICD5 Length = 69 Score = 74.8 bits (182), Expect = 7e-13, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M DE D EQ I + R K A ++ C CG PIPE RR+ PGVT C E Sbjct: 1 MPDEIDRDQEFNEQRLEEMIEQNRFKP-ATTPSLHYCRLCGEPIPEKRRQTLPGVTTCTE 59 Query: 61 CQAYQERQRK 70 CQA ER+++ Sbjct: 60 CQAIIERRQR 69 >UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q65AH5_YERPE Length = 88 Score = 74.4 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 34/72 (47%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+DE D E L I RQ+ G CE CGN IP R++ PGV C E Sbjct: 15 MADELDLLQEQDELLNQLHIQAARQRSCLEGKSRKRCECCGNRIPLRRQQAIPGVRTCTE 74 Query: 61 CQAYQERQRKHY 72 CQ E ++K Y Sbjct: 75 CQRVLEIRQKQY 86 >UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF8_ECOSE Length = 74 Score = 74.4 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+DE + S L I RIRQ++ GI C+ CG P+P RR++ PGV CV Sbjct: 1 MADEIERFQSHQAMLEADRIQRIRQQLT--GISALFCDDCGAPVPAERRRLIPGVRKCVG 58 Query: 61 CQAYQERQRKHY 72 CQ QE Q +HY Sbjct: 59 CQEVQEIQARHY 70 >UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger protein, DksA/TraR family n=8 Tax=root RepID=B8F4E6_HAEPS Length = 72 Score = 74.4 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M D+ D A + E+ + ++R K A + CE C PIPEARR+ G T C++ Sbjct: 1 MKDQIDRANELAEKEREFALAKLRNKPTA--CSLIHCEDCDEPIPEARRQNVQGCTRCID 58 Query: 61 CQAYQERQRKHY 72 CQ E ++K Y Sbjct: 59 CQQIYEYKQKGY 70 >UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phage VP882 RepID=A2I309_9CAUD Length = 73 Score = 73.6 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 39/71 (54%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MSD AD+A V EQ + + IN C+ C + IPEARR+ PGV LCV+ Sbjct: 1 MSDIADQAQDVIEQHLTASLANRKHNINPAIPSAKHCDDCESEIPEARRRSLPGVRLCVD 60 Query: 61 CQAYQERQRKH 71 C + QE + +H Sbjct: 61 CASLQEIKGRH 71 >UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001827371 Length = 73 Score = 72.4 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D A + ++ I+ R++ + +LCE C PIPEARR PGV LC+ Sbjct: 1 MADFIDLAQAREQEDRERHIHHARRRPAS--PSRFLCEECDAPIPEARRMAVPGVALCIT 58 Query: 61 CQAYQERQRKH 71 CQ E + KH Sbjct: 59 CQEIAEMKNKH 69 >UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34 homolog n=7 Tax=Haemophilus influenzae RepID=Q4QK09_HAEI8 Length = 71 Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D A + E + + R + CE C PIPE RR++ GVT CV Sbjct: 1 MTDQFDRAQQLEEMQREIALKKHR---TFKAVSRLYCEDCDAPIPEKRRQMIQGVTRCVT 57 Query: 61 CQAYQERQRKHY 72 CQ E Q++++ Sbjct: 58 CQQRFEIQQRNF 69 >UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 RepID=A9N2T0_SALPB Length = 84 Score = 69.4 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 2/75 (2%) Query: 1 MSDEADE--AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 MS++ ++ A + T T GIN IR K+++ +CE CG IP AR+ PGV LC Sbjct: 1 MSEDLNDEMAQASTAIFTQRGINAIRAKVHSLRPSKEICECCGADIPAARQLAVPGVELC 60 Query: 59 VECQAYQERQRKHYA 73 CQ +E+Q H A Sbjct: 61 AACQDVKEKQDVHRA 75 >UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=Pseudomonas syringae RepID=A9QS46_PSESX Length = 68 Score = 69.4 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D A + L + + R +I + CE C NPIPE RR G C+ Sbjct: 1 MADDIDRATEQAQYLLDVALFKHR-RIPTSLVSSQFCEDCDNPIPEPRRAAIVGCETCIH 59 Query: 61 CQAYQERQR 69 CQ+ +E++R Sbjct: 60 CQSLREQRR 68 >UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Geobacter sp. M18 RepID=C6MQY5_9DELT Length = 74 Score = 69.0 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+DE D A ++E+ + + CE CG PIPE RR+ PG T CV Sbjct: 1 MADEIDLAQEISERHLEAALAGHLDH-KPAAESLTHCEECGRPIPEGRRQAQPGCTRCVR 59 Query: 61 CQAYQE 66 CQ+ E Sbjct: 60 CQSGIE 65 >UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepID=B5EUP2_VIBFM Length = 89 Score = 68.2 bits (165), Expect = 7e-11, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 1 MSDEADEAYSVTEQLTMT---GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57 M++ V EQ+ T INR R ++ C CG IPEARR I PGV L Sbjct: 1 MANGFTRDGGVQEQIDATVIDAINRARSHLHHEHNDTNYCLECGELIPEARRNIIPGVEL 60 Query: 58 CVECQAYQERQRKHYA 73 CVECQA ++ + K ++ Sbjct: 61 CVECQAKEDAREKAFS 76 >UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD Length = 75 Score = 67.4 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 +D D A ++++ ++RI++ G+ + C CG+ IP+ RR++ GVT CV+C Sbjct: 6 ADPLDRAAALSQAHLEVSLSRIKK---FEGVSAHECVECGSEIPKKRRELLQGVTDCVDC 62 Query: 62 QAYQERQRKHY 72 A +E K+Y Sbjct: 63 AAIKETLSKNY 73 >UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14 Tax=Proteobacteria RepID=B3QCL2_RHOPT Length = 73 Score = 67.1 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ DEA ++ E+ I R +I HG C CG PI EARRK P T CV+ Sbjct: 1 MTDQLDEAQALEERERDDCIARAAGQIKGHG--ATHCVVCGEPIDEARRKAMPSATRCVD 58 Query: 61 CQAYQERQRKHY 72 CQ +ER + + Sbjct: 59 CQESRERWSRSH 70 >UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 Tax=Proteobacteria RepID=B8FC44_DESAA Length = 69 Score = 66.7 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M D D A T I R + + + C+ CG+PIPEARRK PG T C++ Sbjct: 1 MPDPTDRAQEAAADYTRFSIEAARSRGSQS--TLADCQDCGDPIPEARRKAVPGCTRCLD 58 Query: 61 CQAYQERQR 69 CQ E++R Sbjct: 59 CQETYEQRR 67 >UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobacteria RepID=YBII_ECOLI Length = 88 Score = 66.3 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D I R R +I G + CE CG PIP+ARR+ PGV LC+ CQ + Sbjct: 9 DAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 Query: 66 ERQRKHYA 73 + Q+ Y Sbjct: 68 DLQKPAYT 75 >UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q125W5_POLSJ Length = 79 Score = 65.5 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAH------GIPVYLC--EACGNPIPEARRKIF 52 M D+ D A + + + G+ C + CG PIPE RRK Sbjct: 1 MPDDFDRAQQTEQMFRDDALRDQALRFQPGDPTRWQGLSALRCLYDGCGEPIPEQRRKAL 60 Query: 53 PGVTLCVECQAYQERQ 68 PGV CVECQ E++ Sbjct: 61 PGVKFCVECQQRLEKK 76 >UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 Tax=Serratia proteamaculans 568 RepID=A8GA41_SERP5 Length = 73 Score = 65.5 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D A + I R + C C IPE RR+ PGV+ CV Sbjct: 1 MADTIDMAQERQALMLEKQIAHARPVVTQA--SAQFCADCDGEIPEVRRRAIPGVSRCVA 58 Query: 61 CQAYQERQRKHY 72 CQ E Q++H+ Sbjct: 59 CQEVSEAQQRHF 70 >UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11 Tax=Proteobacteria RepID=A4XQ42_PSEMY Length = 88 Score = 65.1 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D + I R R ++ G + CE C IPEARR+ PGV LCV+CQA Sbjct: 9 DAVQEQIDSSIEDAIARARSQL-PKGESLRHCEECDAVIPEARRQAIPGVRLCVKCQAEH 67 Query: 66 ERQRKHYA 73 +R+ Y+ Sbjct: 68 DRENAAYS 75 >UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KGB6_PECWW Length = 79 Score = 64.7 bits (156), Expect = 8e-10, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 1 MSDEADE--AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 MS + D+ A + TEQL + ++ I + ++ I C+ACGN IPEARR PGV LC Sbjct: 1 MSHDLDDEMAMATTEQLLQSSLSLILRNVHNGRISNTCCDACGNEIPEARRLAVPGVELC 60 Query: 59 VECQAYQERQRK 70 V CQ +E K Sbjct: 61 VGCQEVEEHLTK 72 >UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escherichia blattae RepID=Q3ZL39_ESCBL Length = 76 Score = 63.2 bits (152), Expect = 2e-09, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+ D A + + +N+ +++ C C PIP AR + P CV Sbjct: 1 MTKAFDRASDLEMEERERLLNKHLRRVKELPESYGFCNDCEQPIPAARLQALPDAVTCVT 60 Query: 61 CQAYQERQRKH 71 CQA +E +RKH Sbjct: 61 CQAIREHRRKH 71 >UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 Tax=Chromobacterium group RepID=B9Z318_9NEIS Length = 68 Score = 63.2 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D D A + + I R + G+ CE CG PIP AR+ PG T CV+CQ Sbjct: 2 DPFDRAQELEMEQREAAIAAAR-DLVGRGVSATECEDCGTPIPPARQLAAPGCTRCVDCQ 60 Query: 63 AYQERQRK 70 +ER R+ Sbjct: 61 NRRERPRR 68 >UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_BPD3 Length = 67 Score = 63.2 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D D A E+ R+ ++ G +Y CE CG IP ARR++ PGV C+ CQ Sbjct: 2 DIVDIANDYAERELA---ERLYSRVKYVGESLYECEDCGEEIPVARRELVPGVRKCLSCQ 58 Query: 63 AYQE 66 Y E Sbjct: 59 EYLE 62 >UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35 Tax=Proteobacteria RepID=A1B365_PARDP Length = 91 Score = 62.0 bits (149), Expect = 5e-09, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHG--IPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 D E T I R+R + G CE C PIPEARR+ PGV LCV+CQ+ Sbjct: 9 DAVNEQIEVSTQEAIERMRLRNAQRGDRESAAFCEECDEPIPEARRRAIPGVRLCVDCQS 68 Query: 64 YQER 67 ++R Sbjct: 69 GRDR 72 >UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria RepID=A4JDG9_BURVG Length = 77 Score = 61.3 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLC--EACGNPIPEARRKIFPGVTLCVE 60 D+ D A + EQ I + +++ C EACG PIPE RR+ G CVE Sbjct: 2 DDFDHASDIEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVE 61 Query: 61 CQAYQER 67 CQ +E+ Sbjct: 62 CQERREQ 68 >UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7N392_VIBHB Length = 72 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINR--IRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 M D D A + QLT + R K A C CG+PIPEARR+ G C Sbjct: 1 MPDVIDHACDIEAQLTEVALANQLARAKPKASRESAQECGECGDPIPEARRQHMTGCQYC 60 Query: 59 VECQAYQERQRK 70 CQ+ E+ ++ Sbjct: 61 THCQSDLEKMKR 72 >UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FUG7_PSYA2 Length = 66 Score = 59.4 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+AD A + ++R + C CG IP A+R+ GVTLCV+ Sbjct: 1 MADDADRANDYVDLTMAHCLSRA---PKFDKPSLTECMECGEDIP-AKRQAMGGVTLCVD 56 Query: 61 CQAYQERQRK 70 CQ+ E++ K Sbjct: 57 CQSVFEKRGK 66 >UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Pseudomonas putida KT2440 RepID=Q88IG2_PSEPK Length = 72 Score = 58.6 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D AD A + ++ + + C CG IPE RR G C+E Sbjct: 1 MADIADLANDRAQWHLDLVLSA--RLPAPECESLEDCVGCGGSIPEPRRLAVQGCQRCIE 58 Query: 61 CQAYQERQRKHYA 73 CQ + E++ YA Sbjct: 59 CQGFFEKKGARYA 71 >UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826470 Length = 71 Score = 57.8 bits (138), Expect = 9e-08, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D D A + E ++ R IN + + CE CG IPE RR PG C ECQ Sbjct: 2 DIIDTAAEIEELQRNAALSAHR--INRNAVSAERCEECGEDIPEPRRAAVPGCQTCSECQ 59 Query: 63 AYQERQRKHY 72 + E + K Sbjct: 60 SVIELKNKQR 69 >UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyces RepID=Q9S2X6_STRCO Length = 239 Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + A + T + ++ R +++A + CE CGNPI +AR + FP TLCVEC+ Sbjct: 176 EHELALAATAREVLSQTERALDRLDAGTYGL--CENCGNPIGKARMQAFPRATLCVECKQ 233 Query: 64 YQERQ 68 QER+ Sbjct: 234 KQERR 238 >UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GGH6_9NEIS Length = 75 Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MS + D+A + E+ ++ ++ C+ CG+ IPEARR+ G C+E Sbjct: 1 MSRQIDQACELEERYRQAALDYQAKQNYPQRPSASHCQDCGDIIPEARRRAALGCQYCIE 60 Query: 61 CQAYQERQRKHYA 73 CQ E + YA Sbjct: 61 CQERIEHAKAQYA 73 >UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4E4_METEA Length = 73 Score = 56.7 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D + E + IR + + C+ CG IP RR+ P CV Sbjct: 1 MADDVDMIQHLDEMAMDGKLAAIRSRTETTDLAPEDCDDCGGDIPMERRRAAPWTRRCVR 60 Query: 61 CQAYQER 67 CQ ER Sbjct: 61 CQTLAER 67 >UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas RepID=A6UZ55_PSEA7 Length = 69 Score = 56.7 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D A + Q + + ++ G + C+ CG IPEARR G+ C Sbjct: 1 MADCFDRAQARELQDRELALQAHQVRVRPSGPSLTHCQECGEQIPEARR-ALGGIIRCTP 59 Query: 61 CQAYQERQRK 70 CQA E+ + Sbjct: 60 CQARFEKGGR 69 >UniRef50_A7ZJE9 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family n=45 Tax=root RepID=A7ZJE9_ECO24 Length = 73 Score = 56.3 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D A + E T I +++N I C CG+PI E RR + G C Sbjct: 1 MADIIDSASEIEELQRNTAIK--MRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCAS 58 Query: 61 CQAYQERQRKHY 72 CQ E K Sbjct: 59 CQEDLELISKQR 70 >UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8_PSEA8 Length = 66 Score = 55.9 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D AD A + + + A CE CG PIP+ARR+ PG + C++ Sbjct: 1 MADLADHANELVLARLDGLLAA--RPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCID 58 Query: 61 CQAYQERQ 68 CQ ER+ Sbjct: 59 CQDRHERR 66 >UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomycetales RepID=A4XDN2_SALTO Length = 139 Score = 55.5 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E A S+ E++T + R ++++ G CE CGNPIP R FP TLCV C+ Sbjct: 79 EISLANSILERITQ--VERALERLDEGGYG--WCERCGNPIPVERLAAFPSATLCVTCKQ 134 Query: 64 YQERQ 68 ER+ Sbjct: 135 LAERR 139 >UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Propionibacterium acnes RepID=D1YA14_PROAC Length = 159 Score = 55.1 bits (131), Expect = 6e-07, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 9/75 (12%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYL---------CEACGNPIPEARRKIFP 53 D D S E+ + R + + CE+CG PI +AR + FP Sbjct: 85 DTIDVGSSQFERDQEISVTRNARAVYDQSKLALQLLDRGTWGTCESCGEPIGKARLQAFP 144 Query: 54 GVTLCVECQAYQERQ 68 T+CV+C+ QER+ Sbjct: 145 RATMCVKCKQRQERR 159 >UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD Length = 68 Score = 54.7 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D D+A E + + + + CE CG IPEARR+ PG C+ CQ Sbjct: 2 DVIDQANERAENMVQAALAQ--RTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQ 59 Query: 63 AYQERQRK 70 +E + Sbjct: 60 ELREHPAR 67 >UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4E4_9DELT Length = 66 Score = 54.7 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M D D + E ++ + A C CG PIPE RR PGVTLCV Sbjct: 1 MPDFCDMGHEAEELARKAALSMAGTR-RADAPSRETCAECGAPIPEPRRVAVPGVTLCVA 59 Query: 61 CQAYQE 66 CQA +E Sbjct: 60 CQAAKE 65 >UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12 Tax=Desulfovibrio RepID=A1VE28_DESVV Length = 78 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAH-----GIPVYLCEACGNPIPEARRKIFPGV 55 M+D D+A + I+ R ++ + C CG IPEAR K PG Sbjct: 6 MADIFDQASDYEARDREAAISAARNRLASGPGPEWIDGKPCCRECGEVIPEARVKALPGC 65 Query: 56 TLCVECQAYQE 66 LC EC E Sbjct: 66 GLCRECAEEME 76 >UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum RepID=A3EVE8_9BACT Length = 52 Score = 54.3 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 23/48 (47%) Query: 25 QKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72 ++ G C CG IP RR++ PGV C+ CQ +ER Y Sbjct: 4 SRLQPKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQKERERSSMEY 51 >UniRef50_Q06424 Uncharacterized 8.2 kDa protein in gpA 5'region n=21 Tax=root RepID=YO82_BPP2 Length = 74 Score = 53.6 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M D D +L IN R + G +CE C PIP ARR +P T CV Sbjct: 1 MPDNVDFIQEQQAELLERQINAAR--VKHCGASALVCEECDAPIPAARRAAYPSATRCVS 58 Query: 61 CQAYQERQRKHY 72 CQ+ E + KHY Sbjct: 59 CQSVFEAKNKHY 70 >UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclassified T4-like viruses RepID=A8R990_9CAUD Length = 85 Score = 53.2 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 9 YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 E + I R+++ C C IPEARR+ GV C+ CQ+ + Sbjct: 12 QLEMEAVVQAAIVHARKQVAVERESAKYCFDCDEEIPEARRQAIKGVIYCIGCQSMHD 69 >UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii AYE RepID=B0V602_ACIBY Length = 72 Score = 53.2 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D A + QL I Q + + CE CGN IP R++ + VTLCVE Sbjct: 7 MTDKIDIAQEL--QLKQVQI----QPKDFSRPSLTECEECGNDIPIERQR-YGSVTLCVE 59 Query: 61 CQAYQERQRKHY 72 C+ QE+ K Y Sbjct: 60 CKNTQEKLSKRY 71 >UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acinetobacter RepID=B2I3M6_ACIBC Length = 66 Score = 53.2 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D+A + L I + G C CG IPE RR+ GV C+E Sbjct: 1 MTDLIDKAQESADYLLQQEIA---NRCRFEGESEKECVECGEEIPE-RRRALGGVKFCIE 56 Query: 61 CQAYQERQRK 70 CQ ER+R+ Sbjct: 57 CQTKLERKRR 66 >UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GH83_9ACTO Length = 232 Score = 53.2 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + A + + + R +++A V CE CG PI +AR + FP LCV+C+ Sbjct: 170 EHELALAAGSRERLEQTERALLRMDAGTYGV--CENCGKPIGKARMQAFPHAILCVDCKQ 227 Query: 64 YQERQ 68 ER+ Sbjct: 228 KSERR 232 >UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67Q17_SYMTH Length = 269 Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 9/75 (12%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIFP 53 AD E+ G+ + +CE CG PI R K FP Sbjct: 46 HPADLGTETFERSKDLGLRSHMLRRIQEIESALQRMDQGTYGICEECGRPIDPERLKAFP 105 Query: 54 GVTLCVECQAYQERQ 68 T C+ CQ +E + Sbjct: 106 SATTCITCQQRREAR 120 >UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 Tax=Shewanella halifaxensis HAW-EB4 RepID=B0TKU6_SHEHH Length = 68 Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 31/67 (46%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 DE DE+ V + + K+ C CG IPE RR+ GV LC++CQ Sbjct: 2 DEGDESVRVQARALNQYLAGRATKLLVAKASASYCARCGEDIPEPRRQAVKGVQLCIDCQ 61 Query: 63 AYQERQR 69 ER++ Sbjct: 62 TLSERKQ 68 >UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD Length = 74 Score = 52.8 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + A + + I R + + G C CG PIP ARR P T C ECQ Sbjct: 6 EFELAQQIEQMQRDVAIELARAQCHGAG--AEECVECGEPIPAARRACVPYATRCTECQG 63 Query: 64 YQERQRKHY 72 E++R Y Sbjct: 64 RFEQRRTGY 72 >UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WXU2_COMTE Length = 76 Score = 52.0 bits (123), Expect = 5e-06, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQK----INAHGIPVYLCEACGNPIPEARRKIFPGVT 56 M+D D A + QL + ++ C CG IPEARRK PG Sbjct: 1 MTDFFDRAQARELQLREDALRDQTRRAGLSGKTEADSATECA-CGALIPEARRKAVPGCQ 59 Query: 57 LCVECQAYQERQR 69 CV+C++ QER++ Sbjct: 60 RCVKCESAQERKK 72 >UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YA40_9GAMM Length = 73 Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 4/69 (5%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGI----PVYLCEACGNPIPEARRKIFPGVTLC 58 DE D A + I ++ + C CG IP R K P V C Sbjct: 2 DEFDHAQQQEQAFRDKAIAHQLKQPSETPYEDEDGYRYCLDCGQDIPLKRIKALPHVVRC 61 Query: 59 VECQAYQER 67 V CQ +ER Sbjct: 62 VSCQDKKER 70 >UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2WA51_MAGSA Length = 74 Score = 51.3 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 26/71 (36%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D AD A E + R + G Y C +CG IP+ RR PG C Sbjct: 1 MADLADLAKEREEANREAALAAFRARARPTGESAYFCRSCGERIPDERRAAVPGTNHCTF 60 Query: 61 CQAYQERQRKH 71 C H Sbjct: 61 CAQQITAASPH 71 >UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenterica_13393 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190AE5D Length = 75 Score = 50.9 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%) Query: 1 MSDEADEAYSVTE----QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVT 56 MS + D++ + E R +I H + C CG+ IP++RR+ PGV+ Sbjct: 1 MSIDVDDSMAQNESQVNIDNRFAEIRAALRIKGH-VSRRHCRDCGDEIPDSRRESIPGVS 59 Query: 57 LCVECQAYQERQRK 70 LC+ CQ ++E K Sbjct: 60 LCMYCQEWRESGDK 73 >UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N773_9GAMM Length = 69 Score = 50.9 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D AD+A + E + R+ A G CE CG+PIPEARR+ +P T C ECQ Sbjct: 2 DIADKAAEIEEMNRAQALAARRRIPAAPGCA--ECEDCGDPIPEARRRAYPSATRCTECQ 59 Query: 63 AYQERQRKHY 72 A ER K+ Sbjct: 60 ARHERHAKNR 69 >UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QCE7_CATAD Length = 275 Score = 50.9 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 E A + E L T R ++ A V CE+CG P+ + R + FP TLC+ C+ Sbjct: 214 HEMAIANNAREMLQQT--ERALARLAADTYGV--CESCGEPVGKYRLQAFPRATLCMSCK 269 Query: 63 AYQERQ 68 QER+ Sbjct: 270 QKQERR 275 >UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomycetales RepID=A1SL71_NOCSJ Length = 283 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Query: 12 TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 +E+ + I R +I+ V CE+CGNPI + R FP TLC+ C+ +ER+ Sbjct: 229 SERDKLAQIERALARIDDGTYGV--CESCGNPIGKMRLMAFPRATLCMTCKQREERR 283 >UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 Tax=Streptomyces RepID=D1X2L9_9ACTO Length = 248 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 E A + E L T R ++ A + CE CG PI +AR + FP TLCVE + Sbjct: 186 HELSLAANAQEMLEQT--ERALARLEAGTYGL--CEICGKPIGKARMQAFPRATLCVEDK 241 Query: 63 AYQERQ 68 QER+ Sbjct: 242 QKQERR 247 >UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10 Tax=Actinomycetales RepID=A6WCW5_KINRD Length = 159 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 12 TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 + + R ++ + V CE+C P+ +AR + FP VTLCV C++ ER+ Sbjct: 105 NARELLEQTQRALVRLGSGVYGV--CESCDGPVGKARLQAFPRVTLCVRCKSRGERR 159 >UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5 Tax=Clostridium RepID=A3DD29_CLOTH Length = 212 Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + A V E+ + IN K++ CE CG I E R + P LC++C+ Sbjct: 61 ELNNALKVHEERLLEDINEALTKMDKGSFGK--CELCGKEIDEERLEALPYTRLCIDCEN 118 Query: 64 YQE 66 +E Sbjct: 119 AKE 121 >UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 Tax=Roseiflexus RepID=A5UPY9_ROSS1 Length = 121 Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E D A + + +N ++++ +C CG PIP R + P TLCV CQ+ Sbjct: 56 ERDLALRSNARELLEQVNAALRRLDEGTYG--ICADCGEPIPIERLEALPYATLCVRCQS 113 Query: 64 YQERQRK 70 +ER R+ Sbjct: 114 TRERARR 120 >UniRef50_C4LBC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBC7_TOLAT Length = 76 Score = 49.3 bits (116), Expect = 3e-05, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 27/69 (39%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MSD D A + +Q + R + + + C C PIP R CVE Sbjct: 1 MSDVVDRANDLVQQRLDDEMARRHRDVEKPLVIHRFCFDCEQPIPAERLASIQSAKRCVE 60 Query: 61 CQAYQERQR 69 CQA E Q Sbjct: 61 CQALFEEQE 69 >UniRef50_A5EYQ4 DksA-like zinc finger domain containing protein n=8 Tax=root RepID=A5EYQ4_VIBC3 Length = 69 Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 3 DEADEAYSVTEQLTMTGIN--RIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 D D+A + + R R A+ C C +PIP+ R++ G C Sbjct: 2 DVIDDAAKTEAKFQQMALANHRARAMQTAYLPSRTHCLECDDPIPKERQEKVKGCQYCTP 61 Query: 61 CQAYQERQ 68 CQA +E++ Sbjct: 62 CQAAKEQR 69 >UniRef50_B3B1J8 Conserved domain protein n=5 Tax=Gammaproteobacteria RepID=B3B1J8_ECO57 Length = 75 Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 3 DEADEAYSVTEQLTMTGI--NRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 D++D A +V E+ + + R++ +C CG IP AR P CV Sbjct: 2 DDSDRAQAVMERGSERALCNRLTRKRQAVDTPGRRVCADCGGEIPAARLVAVPDAIRCVN 61 Query: 61 CQAYQERQ 68 CQ E + Sbjct: 62 CQNIMEAR 69 >UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7U4_AMMDK Length = 176 Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A L + I +++ CE+CG PIP R + P TLC C+ Q Sbjct: 39 DLALREDALLKLQVIEDALRRLEEGTYG--YCESCGAPIPRERLEAVPYTTLCHACKERQ 96 Query: 66 ERQ 68 E + Sbjct: 97 EAK 99 >UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsid scaffolding protein n=1 Tax=Histophilus somni RepID=Q48285_HAESO Length = 76 Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D A TE + I + +QK V C C IPE R+K G C++ Sbjct: 1 MTDQVDRANEYTEIMQQLAIQKHQQK-TREKSTVKYCLDCQEEIPEIRQKN--GYCRCID 57 Query: 61 CQAYQERQRKHY 72 CQ E+ ++ Y Sbjct: 58 CQRIIEKHQRIY 69 >UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D3H2_PELTS Length = 242 Score = 48.6 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A L + I+R KI C+ CG IP R + P C +C+ + Sbjct: 68 DFALRENAMLAVAAIDRALAKIENGTYGK--CDNCGREIPLERLEAVPSTVCCKKCKEAE 125 Query: 66 ERQRK 70 E+ + Sbjct: 126 EKNTR 130 >UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,putative phage gene n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EIS7_ALISL Length = 71 Score = 48.2 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 3 DEADEAYSVTEQLTMTGINR--IRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 D D A ++ + T + +QK C C IP+AR++ G CV Sbjct: 2 DAFDRASALEAKQTEVALANHMAKQKNKVEIKSAEECIECEKAIPKARQEAVKGCQYCVN 61 Query: 61 CQAYQER 67 CQ ++ Sbjct: 62 CQELADK 68 >UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7 Tax=Actinomycetales RepID=A0LTP3_ACIC1 Length = 527 Score = 48.2 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 E A + + +I CE CGNPI + R + P TLCV C+ Sbjct: 466 HEMSLAN--NARDLLVQTEHALARIADGTYGR--CENCGNPINKLRLQANPRATLCVSCK 521 Query: 63 AYQERQ 68 +ER+ Sbjct: 522 QREERR 527 >UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AEE3_THECD Length = 114 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 D+ + + T+ I ++ + CE CG PIPE R +I P CV C Sbjct: 49 PDDTALVQADALRQTLEDIEEALLRLRQGRYGL--CEKCGKPIPEGRLEILPYARCCVSC 106 Query: 62 QAYQERQR 69 Q + + Sbjct: 107 QQRRRGRA 114 >UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria RepID=Q5UF45_9PROT Length = 202 Score = 47.8 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 9/79 (11%) Query: 2 SDEADEAYSVTEQLTM-TGINRIRQKINAHGIPVY--------LCEACGNPIPEARRKIF 52 D D A E + R R+ I + + CE+CG I R + Sbjct: 121 PDSLDRAAKEEEFMLELRKRERERKLIAKIDLSLKDLEDNLYGYCESCGVEIGIKRLEAR 180 Query: 53 PGVTLCVECQAYQERQRKH 71 P T C++C+ E + K Sbjct: 181 PTATKCIDCKTVDEIKEKQ 199 >UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TGP7_HELMI Length = 238 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Query: 20 INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 I + +++I+ +CE C IP+AR P TLC+ECQ+++E Sbjct: 76 IAKAKRRISEGIYG--ICERCHQKIPDARMAAMPTATLCIECQSHEE 120 >UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R2J7_9PLAN Length = 148 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 DE + + E + I+ +++ + CE C PIP R + P +C++CQ Sbjct: 53 DEINSQLAEVESRELAHIDTALERMRSGNYGA--CEGCNEPIPLLRLQALPYAVMCIKCQ 110 Query: 63 AYQER 67 E+ Sbjct: 111 REAEK 115 >UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WG44_9RHIZ Length = 76 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 + A EQ GI R + G C CG+ I RR P CV+CQ Sbjct: 9 ELADMRAEQERDAGIAAARAPLKQTG--TLDCIRCGDEIEAERRAALPSARRCVDCQESF 66 Query: 66 ERQR 69 ER + Sbjct: 67 ERWQ 70 >UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfitobacterium hafniense RepID=B8FT18_DESHD Length = 222 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 9/78 (11%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIFP 53 AD A V E+ I+ LCE C IP R + P Sbjct: 45 HPADIATEVYERSRDVAIHDRLHHRIQAIDSALQRYEEGKYGLCEHCQKEIPLGRLEALP 104 Query: 54 GVTLCVECQAYQERQRKH 71 T+C EC +E + +H Sbjct: 105 FTTVCTECSRLEEMEEQH 122 >UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V43_DESDG Length = 149 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 9/77 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYL---------CEACGNPIPEARRKIF 52 DE ++A + E + + A CE CG+ I EAR K Sbjct: 61 PDENEQASRLAELTLDVALRGRLARQLAAVESALHRIATGGFGRCEECGDEIGEARLKAN 120 Query: 53 PGVTLCVECQAYQERQR 69 P TLC+ CQ +E + Sbjct: 121 PTTTLCIHCQEDREAEA 137 >UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacteria RepID=A6T2Z9_JANMA Length = 310 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 9/80 (11%) Query: 2 SDEADEAYSVTEQLTMTGIN----RIRQKINAHGIPVY-----LCEACGNPIPEARRKIF 52 D AD A E ++ +K+ + + CE G PI R Sbjct: 229 PDPADRATIEEEHALELRTRDRERKLLKKVQQSLLSIDSGEYGWCEETGEPIGVPRLLAR 288 Query: 53 PGVTLCVECQAYQERQRKHY 72 P TL +E Q +E ++K Y Sbjct: 289 PTATLSLEAQQRRELKQKLY 308 >UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWL7_HALOH Length = 228 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E D Q+ + + ++ + CE CG I E R + P TLC CQA Sbjct: 60 EKDRGLRDNAQVLLNKVENALNRLEEGNYGL--CEKCGQEIREERLETIPYATLCERCQA 117 Query: 64 YQERQRKHY 72 +E + + Sbjct: 118 KEEGKDYNR 126 >UniRef50_Q6U9H2 Putative uncharacterized protein n=2 Tax=unclassified T4-like viruses RepID=Q6U9H2_9CAUD Length = 84 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%) Query: 29 AHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 G CE C PIPEARR CV+CQ + Sbjct: 31 YKGDTPEFCEECDEPIPEARRMAI-STAYCVQCQTVHD 67 >UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammaproteobacteria RepID=DKSA_BUCBP Length = 151 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 9/79 (11%) Query: 2 SDEADEAYSVTE--------QLTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIF 52 D D A E I +I + + + CE+CG I R + Sbjct: 70 PDPIDRAVQEEEFSFELRHRDRERKLIEKIEKTLKKVENKDFGYCESCGIEIGIKRLEAR 129 Query: 53 PGVTLCVECQAYQERQRKH 71 P LC++C+ E + K Sbjct: 130 PTANLCIDCKTLSEIREKQ 148 >UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJQ4_9FIRM Length = 203 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 16/30 (53%) Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQE 66 CE CG PIPE R P CV+C+ E Sbjct: 91 CENCGKPIPEERLDALPYAEFCVQCKKKSE 120 >UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q021M5_SOLUE Length = 143 Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 13/79 (16%) Query: 2 SDEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D D TE+ + Q+I V C C N IP R K Sbjct: 54 ADSLDRIQHATEREMAIRRIELDFSKVQSVRSALQRIAEGTYGV--CSECDNEIPGKRLK 111 Query: 51 IFPGVTLCVECQAYQERQR 69 P C++CQ +R+R Sbjct: 112 AVPWTPYCLDCQDSADRRR 130 >UniRef50_B9JYG7 DnaK suppressor protein n=2 Tax=Agrobacterium vitis S4 RepID=B9JYG7_AGRVS Length = 72 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 5 ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64 + A EQ + R + G C CG IP+ARR +P C +CQ Sbjct: 7 FELAEERIEQERDAKVAAARADLKKAG--ATECLDCGRAIPQARRFAYPSAIRCFDCQVS 64 Query: 65 QERQ 68 ER+ Sbjct: 65 IERE 68 >UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4B65 Length = 95 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 9 YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 + E + I R +++ A CE C IP AR P T CV+CQ ER Sbjct: 1 MAELEAKELAQIERALRRLKAGTYGK--CEVCSIKIPVARLNALPFSTFCVDCQREMER 57 >UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DUR8_METI4 Length = 249 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 + D A S+ Q + I +C+ CG PIP R + P V+CQ Sbjct: 147 DRDFALSLLSQENDSLIEIDDSLKRIEDNTYGICQMCGKPIPIIRLQAIPYARFTVDCQR 206 Query: 64 YQERQR 69 E+++ Sbjct: 207 QLEKEK 212 >UniRef50_A1F607 Conserved domain protein n=3 Tax=Vibrio cholerae RepID=A1F607_VIBCH Length = 76 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 8/74 (10%) Query: 1 MSDEADEAYSVTEQLTMTGINR--------IRQKINAHGIPVYLCEACGNPIPEARRKIF 52 MSD D+A ++ +N I+++ + C +CG+ IP+ R + Sbjct: 1 MSDLFDKAQERDQEFLALALNNHHAARRNMIQEQPDEDEEGNRYCLSCGSEIPKRRIEAQ 60 Query: 53 PGVTLCVECQAYQE 66 P CV CQ+ +E Sbjct: 61 PEAVRCVSCQSRKE 74 >UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 Tax=Leptospirillum RepID=C6I0P9_9BACT Length = 136 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M + D A +++ ++ CE CG I E R P LC++ Sbjct: 56 MGEGVDLALLEMRNRMKRSVDQALLRLEEGSYGN--CEDCGGEIEEKRLMAMPFAQLCIK 113 Query: 61 CQAYQERQRK 70 CQ +E K Sbjct: 114 CQRKKEELEK 123 >UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID=B2S244_TREPS Length = 120 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%) Query: 2 SDEADEAY----SVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57 SD+ D S + + I +I C CG IPE R + P + Sbjct: 48 SDDMDRKMLESLSAKDLRCLQQIESALLRIEQGRYGK--CADCGESIPEDRLRAIPYSLM 105 Query: 58 CVECQAYQERQRKHY 72 C+ECQ+ +E +R+ + Sbjct: 106 CIECQSARESKRRAF 120 >UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3 Tax=Shewanella RepID=Q0HYS5_SHESR Length = 68 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 2/66 (3%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D E K C CG+ IPE RR+ GV LCV CQ Sbjct: 5 DLVTREQLRAEHRFEQQRKAQAAKPVP--PSATDCAECGDEIPEGRRQAILGVRLCVTCQ 62 Query: 63 AYQERQ 68 ++E Q Sbjct: 63 TWRESQ 68 >UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacteria RepID=A4SHJ5_AERS4 Length = 128 Score = 46.3 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 13/82 (15%) Query: 1 MSDEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARR 49 M+DE D A + + ++IN CE+CG+ I R Sbjct: 43 MADEIDRASIEEARRLELNRIEHDKLHLRKLQGALRRINEGDFG--YCESCGDEISLKRL 100 Query: 50 KIFPGVTLCVECQAYQERQRKH 71 + P CVECQ+ +E H Sbjct: 101 QARPESRFCVECQSTKEFNDTH 122 >UniRef50_Q8EDR9 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Shewanella oneidensis RepID=Q8EDR9_SHEON Length = 71 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 1 MSDEADEAYSVTEQLTMTGINRIR----QKINAHGIPVYLCEACGNPIPEARRKIFPGVT 56 M D+ D A V +Q ++R R ++ + + C CG I R P Sbjct: 1 MIDQFDRAQEVEQQFRDNALSRQRKHKVEQPDINNKGERCCLDCGVVIEARRLVFMPTAV 60 Query: 57 LCVECQAYQER 67 CVECQ +ER Sbjct: 61 RCVECQTAKER 71 >UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromonosporaceae RepID=A4X6U9_SALTO Length = 132 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 26/66 (39%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E D A S+ + CE CG IP R +IFP T CV C+ Sbjct: 66 ERDTAQSLLRTILDRRAQFEHALTRLEEGTYGFCEGCGASIPVERLEIFPSATTCVTCKQ 125 Query: 64 YQERQR 69 +ER+ Sbjct: 126 TRERRA 131 >UniRef50_Q2SPX6 DnaK suppressor protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPX6_HAHCH Length = 78 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D D+A + E+L + + R R C C + IP R++ GV+ CVEC+ Sbjct: 4 DILDQAAELQERLNASALARQRAGSALGQPSRAHCIDCEDAIPPLRQQ-LGGVSRCVECE 62 Query: 63 AYQERQRKH 71 Y + ++ Sbjct: 63 DYYQHAQRQ 71 >UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n=2 Tax=Betaproteobacteria RepID=A1K6D2_AZOSB Length = 135 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%) Query: 20 INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 I R++I +C CG IP AR + P T CV CQ+ ER Sbjct: 76 IEAARERIAEG--EAGICVDCGEEIPFARLEAQPTATRCVRCQSLYER 121 >UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW56_ALIAD Length = 213 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%) Query: 7 EAYSVTEQLTMTG----INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 +V E+L + +I CE+CG PIP R + P CV+C+ Sbjct: 58 RNQAVGERLRDERALADVEDALSRIRQGTYGQ--CESCGRPIPPDRLEAIPTTRRCVDCE 115 Query: 63 AYQERQR 69 E ++ Sbjct: 116 REVEARQ 122 >UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio RepID=D2L3E3_9DELT Length = 131 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 9/80 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIF 52 +D AD A + +++ + +++ +C+ CG I AR + Sbjct: 39 ADVADRATAESDRHLTILMRERDRQLIGEINEALARVKDGDYGICQECGEEIGLARLRAQ 98 Query: 53 PGVTLCVECQAYQERQRKHY 72 P TLCV C++ E + Y Sbjct: 99 PTATLCVHCKSMLEEMGRPY 118 >UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK24_9BACT Length = 147 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + E + + + + ++++ C C + IPEAR P LCV C+ Sbjct: 69 EINLNVMSDEGIKVQLVQQAIERLDEGKYGR--CVDCRDDIPEARLDAIPYAKLCVACKE 126 Query: 64 YQERQ 68 +E Q Sbjct: 127 TRESQ 131 >UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQT2_9PLAN Length = 134 Score = 45.9 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 DE + E + I++ ++I G CE C IP AR + P TLC++CQ Sbjct: 54 DELSSQLAEVESRELAQIDKALERI--RGGSFGECEGCTCKIPTARLQALPYATLCIKCQ 111 Query: 63 AYQE 66 E Sbjct: 112 RELE 115 >UniRef50_P44221 Uncharacterized protein HI1497 n=3 Tax=Haemophilus RepID=Y1497_HAEIN Length = 75 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 6/72 (8%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQ------KINAHGIPVYLCEACGNPIPEARRKIFPG 54 M+D D+ E L + +++A C CG PIP R + P Sbjct: 1 MADVLDQLNEREEALLQNILAPHLDTELSDDEVDAIAEAGRQCSECGLPIPTTRLRANPF 60 Query: 55 VTLCVECQAYQE 66 CV CQ E Sbjct: 61 AHRCVSCQQDWE 72 >UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YTEA B.subtilis ortholog n=1 Tax=Clostridium acetobutylicum RepID=Q97H97_CLOAB Length = 200 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 12 TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 E+ + I K+ G +CE CG PI E R + P CVECQ Sbjct: 69 NEEALLNKIGNAIDKVEHGGYG--ICEVCGKPISEERLEFVPYAENCVECQNKL 120 >UniRef50_A4XZG1 Transcriptional regulator, TraR/DksA family n=1 Tax=Pseudomonas mendocina ymp RepID=A4XZG1_PSEMY Length = 72 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 4/70 (5%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPG--VTLC 58 M+D D A + + CE CG+PIP R + C Sbjct: 1 MADAVDIANDRMLDELDRRLANHA--LARQCPVAEECEDCGDPIPFERVQALAKLPCLRC 58 Query: 59 VECQAYQERQ 68 VECQ Y ER+ Sbjct: 59 VECQGYHERK 68 >UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK56_MOOTA Length = 251 Score = 45.5 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A Q+ + I Q I C CG IP R + P TLC+EC+ Sbjct: 63 DLALRDNVQVQLRKIEDALQSIAEGTYG--YCRRCGREIPRERLEAIPETTLCLECRRKM 120 Query: 66 ERQRKHYA 73 E + ++ Sbjct: 121 EGKADKHS 128 >UniRef50_Q2LQQ9 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQQ9_SYNAS Length = 86 Score = 45.5 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 15/84 (17%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGI---------------PVYLCEACGNPIPEA 47 DE D A + ++ + + +C CG I A Sbjct: 2 DEIDHAQQHEAMHREIALREHFRRRDNYSERGRNPGLHPKGAGPGERRICRDCGEEIQPA 61 Query: 48 RRKIFPGVTLCVECQAYQERQRKH 71 R P C+ECQ +ER+ +H Sbjct: 62 RLAAMPFAVRCIECQGIKERRERH 85 >UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7 Tax=Cystobacterineae RepID=A7H9X1_ANADF Length = 120 Score = 45.1 bits (105), Expect = 6e-04, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 15/84 (17%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINA------------HGIPVYLCEACGNPIPEAR 48 + DE D A S + T + I R+R + +CE C I R Sbjct: 39 LPDEIDLASS---EYTQSMIFRLRDREKFLLAKIDKALARIENGTFGICERCEEEISVKR 95 Query: 49 RKIFPGVTLCVECQAYQERQRKHY 72 + P TLC+ C+ QE++ K + Sbjct: 96 LEARPVTTLCIRCKEEQEQKEKSF 119 >UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9ID32_BORPD Length = 94 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAH--GIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 + + A + E + +R +++ G C CG+ I AR + PG C++C Sbjct: 21 QYELAARLAEDERAAALEAVRARMSQEVRGSADGNCLDCGDAIAPARLAVLPGAARCMDC 80 Query: 62 QAYQERQRKHYA 73 Q E+Q+ +A Sbjct: 81 QTAHEKQQTRHA 92 >UniRef50_Q52PP5 Putative uncharacterized protein n=1 Tax=Xanthomonas phage Xp15 RepID=Q52PP5_9CAUD Length = 77 Score = 45.1 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIFPGVTLCVE 60 +DE+D A + E I ++ + V C C IP+ R G C+ Sbjct: 5 TDESDLASKLEELAKEDAIQKVLRDGKVPSDWVSPDCYDCDQEIPKDRLAT--GAFRCIH 62 Query: 61 CQAYQERQRKHY 72 CQ E +++Y Sbjct: 63 CQTKFEFNQRNY 74 >UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomonas phage phiHAP-1 RepID=B0ZSI9_9CAUD Length = 75 Score = 45.1 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPV--YLCEACGNPIPEARRKIFPGVTLC 58 MSD AD A +L R ++ A C CG I RRK P C Sbjct: 1 MSDVADIAGEEQARLEEERAARWAREQAARESQAGSEYCVECGFDIDPRRRKAMPSAIRC 60 Query: 59 VECQAYQERQRKHY 72 CQ + +R K Y Sbjct: 61 FGCQEFVDRTAKGY 74 >UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 Tax=Aquificales RepID=C1DXT7_SULAA Length = 144 Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 11 VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 ++ T+ I+ +KI++ +CE CG I E R + P V LC++C +E Sbjct: 56 QADRETLYLIDLALRKIDSGIYG--ICEECGAVIGEKRLEAIPWVRLCIDCSQNEEI 110 >UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibrionales RepID=A7K6F3_VIBSE Length = 208 Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 9/79 (11%) Query: 2 SDEADEAYSVTEQLTM--------TGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIF 52 D D A E I +I + ++ + CE+CG I R + Sbjct: 67 PDPVDRASQEEEFSLELRNRDRERRLIKKIEKTLDKIKEDDFGFCESCGVEIGVRRLEAR 126 Query: 53 PGVTLCVECQAYQERQRKH 71 P LC++C+ E + K Sbjct: 127 PTADLCIDCKTLAEIKEKQ 145 >UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W4E4_DESAS Length = 231 Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A L + + + I +C+ CG I AR P TLC EC+ Q Sbjct: 63 DFALRDDAMLKIRAVEDALKNIEMGKYG--ICDICGKEIGYARLTALPRTTLCKECKEAQ 120 Query: 66 ER 67 ER Sbjct: 121 ER 122 >UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteobacteria RepID=DKSA_HAEIN Length = 145 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 11/82 (13%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY----------LCEACGNPIPEARRKI 51 D AD A E NR R++ I C+ CG I R + Sbjct: 64 PDPADRATQEEEFSLELR-NRDRERKLMKKIEATLKKLDTDDFGYCDCCGEEIGIRRLEA 122 Query: 52 FPGVTLCVECQAYQERQRKHYA 73 P LC++C+ E + K A Sbjct: 123 RPTADLCIDCKTLAEIREKQVA 144 >UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobacteria RepID=Q2LSS1_SYNAS Length = 150 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIF 52 D D A +++ + +K+ A LCE CG PI E R Sbjct: 69 PDPTDRASLESDRNFELRMRDRERKLIAKMQEAIKRIDEGEFGLCEVCGGPISEKRLMAR 128 Query: 53 PGVTLCVECQAYQERQRK 70 P TLC++C+ QE+ K Sbjct: 129 PVTTLCIDCKTKQEKLEK 146 >UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGE3_THEYD Length = 129 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 +S++ T + + I +K+ +CE CG+ IPE R KI P C + Sbjct: 56 LSEDISLKQLSTHRDILKKIEEALRKLEEGTYG--ICEMCGDEIPEERLKILPFAIYCRD 113 Query: 61 CQAYQERQRK 70 CQ E K Sbjct: 114 CQEKIEMIEK 123 >UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campylobacter RepID=A1VXK8_CAMJJ Length = 120 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 + D A S + + I KI +CE+C + I R K+ P C+ C+ Sbjct: 53 QIDFAISTNLKEELIEIEDSLDKIKNGTYG--ICESCDDEIDSQRLKVKPHARYCITCRQ 110 Query: 64 YQERQRKH 71 E+ +KH Sbjct: 111 IAEQGKKH 118 >UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 Tax=Deltaproteobacteria RepID=A1AL35_PELPD Length = 118 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 9/78 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIF 52 D D A +++ I +K+ +CE CG+ I EAR K+ Sbjct: 39 PDPTDRATQESDRNFELRIRDRERKLINKIKEALSRIDSGEFGICEECGDEIGEARLKVR 98 Query: 53 PGVTLCVECQAYQERQRK 70 P TLC+ C+ E++ K Sbjct: 99 PVTTLCINCKLEAEKKEK 116 >UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 Tax=Myxococcales RepID=D0LZD2_HALO1 Length = 124 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 9/81 (11%) Query: 1 MSDEADEAYSVTEQ--------LTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKI 51 ++DE D A S + Q + +N++ + G + +CE C PI + R + Sbjct: 43 LADEMDLASSESYQSFEFRLRGREKSLLNKLDLALRKLGEGTFGICEVCEEPIGKKRLEA 102 Query: 52 FPGVTLCVECQAYQERQRKHY 72 P TLC++C+ QER + + Sbjct: 103 RPETTLCIQCKEAQERDERVF 123 >UniRef50_A4NCL4 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae 3655 RepID=A4NCL4_HAEIN Length = 78 Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 6/76 (7%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAH------GIPVYLCEACGNPIPEARRKIFPG 54 M+D D+ Q+ R + C+ CG IP+AR P Sbjct: 1 MTDILDQLVERESQIEALQQAARRINPLSAEAIQQIAEDGRNCDECGELIPKARLLAQPF 60 Query: 55 VTLCVECQAYQERQRK 70 CV+CQA E+ K Sbjct: 61 ARCCVDCQALLEKTNK 76 >UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXR9_METFK Length = 72 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A + + GI + + G C+ CG I E R+ GV C+ CQ Sbjct: 5 DWAQEMELREREAGIAEKQLQALRSGPGYSHCKDCGEEI-EKERRAIKGVKRCIFCQERY 63 Query: 66 ER 67 ER Sbjct: 64 ER 65 >UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEV8_RALME Length = 123 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Query: 20 INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 I R ++ +C C PIP R + +P C CQ E++R Sbjct: 72 IAAARGRMTLG--SYAICRECEEPIPFERLQAYPTAKRCTACQREHEQKR 119 >UniRef50_C5S4P2 Putative uncharacterized protein n=2 Tax=Pasteurellaceae RepID=C5S4P2_9PAST Length = 77 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 6/67 (8%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQK------INAHGIPVYLCEACGNPIPEARRKIFPG 54 MSD+ D EQL + + I + C CG PIP R + P Sbjct: 1 MSDDVDRIMEQDEQLLSLQLAPHLENQLSDDEIEQIALSGRDCIECGLPIPIQRLRAVPF 60 Query: 55 VTLCVEC 61 C+ C Sbjct: 61 AVRCICC 67 >UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSA8_9FIRM Length = 227 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A L + + +K+ A +C+ CG I R + P C+ C+ Sbjct: 63 DLALRDNAHLLLEQVEHALEKVAAGNYG--ICDNCGREIGIERLQAIPYAARCIVCEKKY 120 >UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SLK5_METPP Length = 122 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 DE D Q + ++ Q++N CE CG PI R + P C++CQ Sbjct: 55 DELDITLISHWQRELDEVSAALQRLNTGSYG--HCERCGEPIGLPRLRALPEARHCLDCQ 112 Query: 63 AYQER 67 +R Sbjct: 113 EQADR 117 >UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLC7_DESVM Length = 119 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIFPGVTLCV 59 M D Y +Q T T + +R + + C+ CGN IP AR P T CV Sbjct: 42 MPDVEGMTYRSWKQRTETRLQVLRATLERLDDEDFGYCDDCGNEIPAARLLAVPTTTRCV 101 Query: 60 ECQAYQERQRKH 71 C + +E + Sbjct: 102 HCMSAREERGAQ 113 >UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C120_SPHTD Length = 130 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 16 TMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 I R K++ CE C PIP R + P C++CQA +R++ Sbjct: 74 RKVLIERAITKMDQGEYG--YCENCKRPIPPDRLEALPFARYCIDCQADMDRRQ 125 >UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR family n=2 Tax=Cystobacterineae RepID=Q1D0G7_MYXXD Length = 130 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%) Query: 22 RIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 + K+ CE CG+ IP R + P CV CQ ++ Sbjct: 71 KALGKLRDDPDAFGECEECGDEIPLGRLRAMPYAEFCVTCQGNKD 115 >UniRef50_C0QJK4 DksA2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJK4_DESAH Length = 114 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 S +EA ++T++ + R +I LC AC PIP AR I P LCV+C Sbjct: 51 SKSMNEAALKRARITLSKLERALARI--GSPDFGLCSACEEPIPFARLMILPETELCVKC 108 >UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZKC1_PLALI Length = 152 Score = 43.2 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 10 SVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 + E + INR I V C+ C IP AR + P T+CVECQ QE Sbjct: 59 AALETRELMQINRALALIEEGHYGV--CQKCSKAIPLARLQAVPFTTVCVECQRRQE 113 >UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LWG8_BACS4 Length = 242 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 4/68 (5%) Query: 4 EADEA-YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 E D A +EQL I+ + I CE CG IP R + P C++ Sbjct: 62 EKDIALNEHSEQLLDE-IDNALKAIEEGSYGK--CEVCGTDIPYERLEAIPNARRCIQHA 118 Query: 63 AYQERQRK 70 + K Sbjct: 119 EEKSVSNK 126 >UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gammaproteobacteria RepID=A5EW31_DICNV Length = 143 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72 E+ + I++ ++I CE C I R + P LC++C+ ER+ K + Sbjct: 80 ERKLLRKIDKALERIKQGHFG--YCEQCDEEIGFHRLEARPTAELCIDCKHLAERKEKSF 137 >UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=A1QYW3_BORT9 Length = 127 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%) Query: 3 DEAD----EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 D D EA S E+ + IN+ +I+ + C AC I R P LC Sbjct: 55 DNMDGNNLEALSSVEKKKLHLINQALYRISQNTYGN--CLACDKSITRERLVAIPYAFLC 112 Query: 59 VECQAYQERQRK 70 + CQ +E++ K Sbjct: 113 ISCQTKKEKKGK 124 >UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PIH5_9PROT Length = 118 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 9/79 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIF 52 +D+ D A T+ +N +QK LCE+CG I R K+ Sbjct: 40 ADDFDVASMNTDLSIEYSLNVNQQKAFLEIESALKRIENGTYGLCESCGEQISLERLKVN 99 Query: 53 PGVTLCVECQAYQERQRKH 71 P LC+ C+ E+Q + Sbjct: 100 PEARLCISCKEQAEKQNRS 118 >UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopirellula baltica RepID=Q7UR73_RHOBA Length = 140 Score = 42.8 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 DE + E + I + CE CG PIP R K P C+ C+ Sbjct: 53 DELNSQLVEVESRELLAIEEAIARFEEGRFG--DCEDCGKPIPLNRLKAIPYAVDCINCR 110 Query: 63 AYQERQR 69 ER+ Sbjct: 111 RAAERET 117 >UniRef50_C9R760 Putative uncharacterized protein n=1 Tax=Aggregatibacter actinomycetemcomitans D11S-1 RepID=C9R760_AGGAD Length = 72 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTM--TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 M+D D+ E + Q+ C CG I +R K P C Sbjct: 1 MNDIVDKTQQRQEIMWANWRKQQVSAQQFAVAMNTARYCIDCGVLIHPSRVKAMPHCVRC 60 Query: 59 VECQAYQERQRK 70 + CQ E +K Sbjct: 61 ISCQQLHEESQK 72 >UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GTL3_9DELT Length = 243 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 8 AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 A + + I+ ++ +C++CG I EAR + P C C E Sbjct: 57 ALDSQARSELNHIDHALDRMIIGNYG--ICDSCGQEISEARLQAVPWARYCRVCVNKAEE 114 Query: 68 QR 69 + Sbjct: 115 KT 116 >UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N407_9BACT Length = 133 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 E + E + I +++ C+ CG PI E R I P CV+C+ Sbjct: 64 HEMELQLLSEEGDVLRLIEDAIKRLVDGEYGK--CQECGEPISEGRLAIRPYAVYCVKCK 121 Query: 63 AYQERQRKH 71 E+Q H Sbjct: 122 EMHEKQGWH 130 >UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253H0_CHLFF Length = 124 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 2 SDEADEAYSVT----EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57 +D D S+ E + INR +KI +C+ G IP AR P T+ Sbjct: 51 TDTFDRTISLEVTTKEYELLRQINRALEKIEESSYG--ICDVSGEEIPLARLMAIPYATM 108 Query: 58 CVECQAYQER 67 V+ Q+ E+ Sbjct: 109 TVKAQSQFEK 118 >UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 Tax=Clostridia RepID=A4XKS6_CALS8 Length = 209 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 2/52 (3%) Query: 18 TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 I + KI C +C IP R P C+ECQ E++ Sbjct: 75 ELIEKALSKIEKGNFG--YCISCKKEIPFDRLLAIPYTEFCIECQKDMEKRE 124 >UniRef50_Q2W8C2 Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W8C2_MAGSA Length = 128 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D+ D A E + + ++ +C+ C +PI R + P C C Sbjct: 52 DDIDCAAERIEAFRDVALKAVLNRMTGPR-SSGICKTCYDPIEPQRIAVNPHARHCSFCA 110 Query: 63 AYQERQRKH 71 A +E+ ++ Sbjct: 111 AEEEQAQRQ 119 >UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria RepID=Q3A0W2_PELCD Length = 118 Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 E+ + I + ++I CE C PI R + P TLC++C+ QER+ K Sbjct: 61 ERKLIMKIRQALERIEQGTFG--ECECCEEPIGAERLRARPVTTLCIDCKTEQERKEK 116 >UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3 Tax=Clostridium RepID=A0Q071_CLONN Length = 206 Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 9/74 (12%) Query: 3 DEADEAYSVTEQLTMTGINRI-RQKINAHGIPVY--------LCEACGNPIPEARRKIFP 53 AD ++ + + +K++ +Y +C C N IP+ R + P Sbjct: 49 HPADIGQEFLDKAKGIALEKAELEKLHEISESLYDMEHGTYGICRICKNQIPDDRLEAVP 108 Query: 54 GVTLCVECQAYQER 67 CV C+ Q++ Sbjct: 109 YAKYCVHCKNNQDK 122 >UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPR7_HAHCH Length = 107 Score = 42.0 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D+ A V ++ + + + Q++ V C ACG IPE+R ++ P LCV C Sbjct: 46 DDVLNALKVETEIEINQVKKALQRLQQGEYGV--CVACGEDIPESRLQVLPFAELCVSCA 103 Query: 63 AYQE 66 + E Sbjct: 104 SKSE 107 >UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ABZ5_CARHZ Length = 213 Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 14/34 (41%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 LC CG IP R P CV CQ E + Sbjct: 87 LCIDCGQKIPVDRLFANPVAIRCVACQKRVEERT 120 >UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificaceae RepID=Y250_AQUAE Length = 145 Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 17/37 (45%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72 +CE CG IPE R P C +C ER+ Y Sbjct: 85 ICERCGEEIPEPRLCAIPWTRYCAKCAEEVERESGTY 121 >UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobacteria RepID=Q1MS84_LAWIP Length = 133 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 13/76 (17%) Query: 2 SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D AD A + + E+ + I Q+I+ V CE CG+ I R K Sbjct: 52 ADPADRASAESDRAFTLRIRDRERRLIRKIQSALQRIDDGTYGV--CEDCGDDIGTPRLK 109 Query: 51 IFPGVTLCVECQAYQE 66 P LC+ C++ QE Sbjct: 110 ARPVTKLCINCKSRQE 125 >UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SGF0_9ACTO Length = 103 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 16/29 (55%) Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQ 65 CE CG IP AR +I P CV CQ + Sbjct: 75 CERCGQDIPTARLEILPSARFCVPCQQRR 103 >UniRef50_C6D536 Transcriptional regulator, TraR/DksA family n=2 Tax=Paenibacillus RepID=C6D536_PAESJ Length = 234 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A E L +T I++ + ++ C ACG PIP+ R + P CVE Q Sbjct: 64 DLALLENEDLHLTRISQALEAMDNGTYGQ--CRACGKPIPDERLEALPDSLYCVEHAPRQ 121 Query: 66 ERQRKH 71 E + Sbjct: 122 ETSHRQ 127 >UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q12E87_POLSJ Length = 134 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 5 ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64 D A EQ+ + R+ N C CG I R P C CQA Sbjct: 65 VDHAAHELEQVLA-ALRRLDDATNGKSPGYGHCLDCGEAIDLRRLAALPATPYCTACQAI 123 Query: 65 QERQRK 70 E +R+ Sbjct: 124 HEHERQ 129 >UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 Tax=Burkholderia multivorans RepID=A9AKZ2_BURM1 Length = 256 Score = 41.6 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 + D A + + I R +Q++ C C P+ AR + P C CQA Sbjct: 185 DVDHALIGMKLAELRAIRRAQQRMVDGSYG--DCIDCDGPVGYARLRARPTAERCTHCQA 242 Query: 64 YQERQ 68 ER+ Sbjct: 243 LYERR 247 >UniRef50_Q0EWC9 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWC9_9PROT Length = 73 Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 4/70 (5%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAH----GIPVYLCEACGNPIPEARRKIFPGVT 56 M+D D E ++R+R + +C C IP AR P Sbjct: 1 MADPCDMGSEREEISRQEALDRVRYRPLEAPLLDEEYRRICRDCECLIPSARLAAVPHAV 60 Query: 57 LCVECQAYQE 66 C CQ E Sbjct: 61 RCASCQEEHE 70 >UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q029W8_SOLUE Length = 149 Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 13/78 (16%) Query: 2 SDEADEAYSVTEQL-----------TMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 SDE D + E+ + I +++ V C C PI R Sbjct: 59 SDEGDLSQQHHEEWIFLNRNTIDMKLLREIADALHRMDTGHYGV--CPECEEPISAKRLD 116 Query: 51 IFPGVTLCVECQAYQERQ 68 P CV CQ + Sbjct: 117 AVPWARYCVTCQEKIAAR 134 >UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGY5_SYNFM Length = 257 Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 18 TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 I+ KI +CE+CG+ I R + P LCV+C E++ Sbjct: 65 EQIDLALGKIAIGEYG--ICESCGDDIALKRLEAIPWARLCVDCARDFEQR 113 >UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG86_9BACT Length = 148 Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Query: 12 TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 +E+ + +N Q+I+ +CE CG I E R +I P T CV C+ E +++ Sbjct: 88 SEREKIRQLNEALQRISDGTYG--ICEFCGEFIQENRLEIIPYATCCVACKEKNEDKKR 144 >UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQK2_FIBSS Length = 157 Score = 41.2 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 18/33 (54%) Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 C+ CG IP+AR P T CV C+ +++ Sbjct: 98 CKICGQLIPKARLMAVPTATKCVNCKEETKKKE 130 >UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Desulfovibrio vulgaris RepID=Q72G22_DESVH Length = 176 Score = 41.2 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 9/74 (12%) Query: 2 SDEADEAYSVTEQLTM-TGINRIRQKINA--------HGIPVYLCEACGNPIPEARRKIF 52 +DE + A + E T ++R +I +CE CG IP AR K Sbjct: 87 ADENEFASRLAEMALSVTLLHRAEHRIGLLENALRRLEAYDYGVCEGCGEDIPVARLKAS 146 Query: 53 PGVTLCVECQAYQE 66 P LCV CQ E Sbjct: 147 PATRLCVFCQQESE 160 >UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 Tax=Verrucomicrobia RepID=B4D0A5_9BACT Length = 233 Score = 41.2 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 2 SDEADEAYSV----TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57 SD D +++ EQ + I ++I V CE G PI R + P Sbjct: 130 SDAYDRDFALSLLSQEQDALYEIEEALKRIELGTYGV--CEMSGKPIAHPRLEALPFARY 187 Query: 58 CVECQAYQERQRK 70 VECQ+ E+Q K Sbjct: 188 TVECQSQIEKQGK 200 >UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A882_GEMAT Length = 127 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 8/79 (10%) Query: 1 MSDEADEAYSVTEQLTMT--------GINRIRQKINAHGIPVYLCEACGNPIPEARRKIF 52 M+D+ +A + +++ +++ C CG I R Sbjct: 49 MADQGTDAMEREKAFLFASKEGRFLWHLDQALRRLYKAPATFGKCHQCGEDIAFERLDAL 108 Query: 53 PGVTLCVECQAYQERQRKH 71 P C+ C+ +E +K Sbjct: 109 PNARYCIACKQREEDAKKS 127 >UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria RepID=DKSA_ECO57 Length = 151 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 11/82 (13%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY----------LCEACGNPIPEARRKI 51 D D A E NR R++ I CE+CG I R + Sbjct: 70 PDPVDRAAQEEEFSLELR-NRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEA 128 Query: 52 FPGVTLCVECQAYQERQRKHYA 73 P LC++C+ E + K A Sbjct: 129 RPTADLCIDCKTLAEIREKQMA 150 >UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LMB8_SYNFM Length = 122 Score = 40.9 bits (94), Expect = 0.012, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 9/77 (11%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYL---------CEACGNPIPEARRKIFP 53 DE D TEQ + ++ +++ + CE CG I R K P Sbjct: 42 DEVDRTSIRTEQEFLLHMHCRNERLVQEILNGLQRIRTGDFGVCEECGKDIELNRLKAHP 101 Query: 54 GVTLCVECQAYQERQRK 70 T C++C+ ER+ + Sbjct: 102 SATQCIKCKKAAERKAR 118 >UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5D7_9PLAN Length = 150 Score = 40.9 bits (94), Expect = 0.012, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 E + I+R +K+ A + C++CG PI R + P C+EC ER+ Sbjct: 62 ESRELMQIDRAIEKMRAGRYGL--CDSCGGPIKLIRLQAVPYAIECIECARRDERRE 116 >UniRef50_A0RMM0 Transcriptional regulators, TraR/DksA family n=9 Tax=Campylobacterales RepID=A0RMM0_CAMFF Length = 122 Score = 40.9 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 9/79 (11%) Query: 2 SDEADEAYSVTEQLTMTGI-NRIRQKINAHGIPVY--------LCEACGNPIPEARRKIF 52 SDE D A + + I + R ++N + +C+ C + I R K+ Sbjct: 40 SDEFDFASINADAILEHSISAKQRSELNEIDESLKKIANRTYGICDMCEDEIDIERLKVK 99 Query: 53 PGVTLCVECQAYQERQRKH 71 P C+ C+ E+ K+ Sbjct: 100 PNAKYCITCREIIEKNNKN 118 >UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio RepID=D2L9K5_9DELT Length = 120 Score = 40.9 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%) Query: 2 SDEADEAYSVTEQ--------LTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIF 52 +D AD A + +++ I +I++ ++ Y C CG I AR K Sbjct: 39 ADPADRATAESDRAFTLRLRDRERRLIKKIKEALDRIDEGTYGECVECGEDISVARMKAR 98 Query: 53 PGVTLCVECQAYQE 66 P TLC++C++ QE Sbjct: 99 PVTTLCIKCKSRQE 112 >UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria RepID=B5EG80_GEOBB Length = 118 Score = 40.9 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 9/78 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIF 52 D D A +++ I +K+ +CE C I EAR K Sbjct: 39 PDPTDRATQESDRTFELRIRDRERKLIVKIQEALARIEAGTFGICEVCEEDISEARLKAR 98 Query: 53 PGVTLCVECQAYQERQRK 70 P TLC++C+ QE++ + Sbjct: 99 PVTTLCIDCKMEQEKKER 116 >UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK78_THEYD Length = 123 Score = 40.9 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 E+ + I + +KIN +CEACG IP R + P LC+EC+ QE K Sbjct: 64 ERKLLKKIEKTLEKINNGTYG--ICEACGAEIPIERLEARPVTDLCIECKTEQEEAEK 119 >UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X580_DESRD Length = 115 Score = 40.9 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 16/32 (50%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 LCE CG I R P LC+ECQ ER Sbjct: 82 LCEECGEEIGVPRLVACPSARLCIECQEQLER 113 >UniRef50_A8EWK7 DnaK suppressor protein DksA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EWK7_ARCB4 Length = 123 Score = 40.5 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 13/78 (16%) Query: 3 DEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51 D+ D A V++ I +KI +C+ CG IP R K Sbjct: 42 DDLDYAELVSDSFIEGMITNHQLDELKQIEEALKKITLGTYG--ICDMCGINIPLGRLKA 99 Query: 52 FPGVTLCVECQAYQERQR 69 P C EC+ E++ Sbjct: 100 KPFAKFCTECRTVYEQEN 117 >UniRef50_B7J8S5 Putative uncharacterized protein n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J8S5_ACIF2 Length = 104 Score = 40.5 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 7/74 (9%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQ------KINAHGIPVYLCEACGNPIPEARRKIFPGV 55 SD D A + EQ ++ RQ K + C C + IP R + V Sbjct: 6 SDILDIAADLAEQERAWRVSVARQAMQASEKPDEDVAGNRYCLDCADVIPPERVQAVQAV 65 Query: 56 TLCVECQAYQERQR 69 CV C +E++ Sbjct: 66 R-CVVCAGIREKKA 78 >UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R8Q8_KANKD Length = 120 Score = 40.5 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M EA ++ + + + ++I C C PI R ++ P LC++ Sbjct: 52 MDQAMSEASVERDKKRLVAVRKALKRIEEGQYG--FCLECDEPISAKRLEVAPETELCLD 109 Query: 61 CQAYQERQRK 70 CQ+++E + Sbjct: 110 CQSFKEEHDR 119 >UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C001_9PLAN Length = 141 Score = 40.5 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 + + + E + I R I CE+C IP AR K P CV C Sbjct: 44 DLESHLAEIEYKELMQIRRAISLIQEGRYG--HCESCNKNIPIARLKAVPYAMFCVSCAE 101 Query: 64 YQE 66 +E Sbjct: 102 QRE 104 >UniRef50_A4G7K6 Putative uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G7K6_HERAR Length = 106 Score = 40.5 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 + D+A E + + I ++I+ H + C CG I AR + P C +C Sbjct: 40 PTDVDDAMIKMELVELADIEAAHRRIDNHQYGL--CIDCGCTIDYARLQASPTAKRCTQC 97 Query: 62 QAYQERQ 68 Q E++ Sbjct: 98 QRLHEQR 104 >UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 Tax=Geobacter RepID=C6E710_GEOSM Length = 130 Score = 40.1 bits (92), Expect = 0.020, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M +A A + + +T + ++++ CE CG I R ++ P CV Sbjct: 57 MLSDAGLAIADIRRNQLTALEEAQRRVEQGTYGK--CENCGEVIDIQRLRLMPFAAYCVS 114 Query: 61 CQAYQERQRK 70 CQ +E K Sbjct: 115 CQKEKEGPGK 124 >UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio RepID=B8J371_DESDA Length = 120 Score = 40.1 bits (92), Expect = 0.020, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 13/76 (17%) Query: 2 SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D AD A + + E+ + I +I+ +CE CG+ I R K Sbjct: 39 ADPADRATAESDRAFTLRIRDRERRLIRKIQAALTRIDDGTYG--ICEDCGDDISIPRLK 96 Query: 51 IFPGVTLCVECQAYQE 66 P LC+ C+A QE Sbjct: 97 ARPVTRLCINCKAKQE 112 >UniRef50_B1I4J4 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4J4_DESAP Length = 212 Score = 40.1 bits (92), Expect = 0.021, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A + + + +++ C+ CG I R + P T C EC+A Sbjct: 67 DFALRENARFRLLAVEDALARMDRGTYGR--CDECGVDIDLERLEAVPFTTKCRECKARA 124 Query: 66 ERQR 69 E + Sbjct: 125 EGKD 128 >UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 Tax=Aquificaceae RepID=B4U7Z4_HYDS0 Length = 118 Score = 40.1 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 17/31 (54%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 CE CG IP R K P ++C+ C+ +E Sbjct: 83 YCEVCGAEIPYERLKARPVTSMCIRCKELEE 113 >UniRef50_A7HEW6 Transcriptional regulator, TraR/DksA family n=4 Tax=Anaeromyxobacter RepID=A7HEW6_ANADF Length = 130 Score = 40.1 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 + + I+R K+ + LCE C I R + P T C CQA E + Sbjct: 63 QAELVARIDRALAKLASAPEDFGLCEDCEEEIAPGRLAVMPYATRCPACQAKTEPR 118 >UniRef50_A7HW84 Transcriptional regulator, TraR/DksA family n=68 Tax=Alphaproteobacteria RepID=A7HW84_PARL1 Length = 146 Score = 40.1 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 9/80 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIF 52 D AD A S TE+ ++K+ + CE G PI R Sbjct: 64 PDIADRASSETERSLELRTRDRQRKLVSKIDAAIRRIDEGTYGYCEETGEPISLKRLDAR 123 Query: 53 PGVTLCVECQAYQERQRKHY 72 P TL +E Q ER+ K Y Sbjct: 124 PIATLSIEAQERHERREKVY 143 >UniRef50_A4V7S0 Putative transcriptional regulator DnaK suppressor protein homolog n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7S0_PSEFS Length = 138 Score = 40.1 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 2/59 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71 E+ I +I C+ G PI R P + E Q ER KH Sbjct: 76 ERAEAMAIKAALVRIEEDAYG--WCDDSGEPIGLKRLLNNPTASRTTEAQTRFERLGKH 132 >UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJ15_ACIBL Length = 121 Score = 40.1 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 9 YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 S ++ + + +I C +CG+ I R + P C+ CQ E+ Sbjct: 58 QSANDRNLLQMVEGALIRIGEGTYG--ECVSCGSEINSKRLEAVPWARYCIGCQEKIEK 114 >UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11 Tax=Pseudomonas RepID=A5W685_PSEP1 Length = 154 Score = 40.1 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 7/67 (10%) Query: 5 ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64 D + QL ++RI + C+ G PI R I P C+E Q Sbjct: 91 IDRDQRLLPQL-EMALDRIADE------SFGWCDDSGEPIGLKRLLISPTTKYCIEAQER 143 Query: 65 QERQRKH 71 E+ +H Sbjct: 144 HEQLDRH 150 >UniRef50_UPI00016C3CE0 transcriptional regulators, TraR/DksA family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3CE0 Length = 253 Score = 40.1 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 2/65 (3%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 S E D E +I+ C +CG + E R P V CV C Sbjct: 59 SQELDTTLLENETYLRDEAVAALGRIDDGTFGR--CTSCGGDVGEERLDALPYVRQCVAC 116 Query: 62 QAYQE 66 ++ Sbjct: 117 AQAEQ 121 >UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia RepID=Q2GEN7_NEOSM Length = 137 Score = 39.7 bits (91), Expect = 0.026, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 4/68 (5%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D A L+ I+ +++ CE G+ I R + P CV+ Q Sbjct: 61 DIIMSAQKRNSLLSE--IDEALERMEQGVYG--YCEETGDEIGFGRLDLEPTARYCVDVQ 116 Query: 63 AYQERQRK 70 +++ + Sbjct: 117 ERLDKKNR 124 >UniRef50_C7LTL7 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTL7_DESBD Length = 133 Score = 39.7 bits (91), Expect = 0.026, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 16/35 (45%) Query: 33 PVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 +CE CG I + R P C+ECQ +R Sbjct: 81 SYGICEMCGEHIADRRLLAIPSALFCIECQEMIDR 115 >UniRef50_C6BZJ9 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZJ9_DESAD Length = 115 Score = 39.7 bits (91), Expect = 0.027, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 9/65 (13%) Query: 11 VTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIFPGVTLCVEC 61 + + + + I + RQ+I + CE CG IP AR P CV C Sbjct: 50 LNQGINKSSIAQSRQRILNLEDALNRLEKDSFFGECEECGEDIPLARLLTLPESRYCVYC 109 Query: 62 QAYQE 66 + E Sbjct: 110 AEHLE 114 >UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3 Tax=Comamonadaceae RepID=Q221D7_RHOFD Length = 124 Score = 39.7 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 + E + A + + ++ ++I + C CG IP AR P C+ C Sbjct: 55 ARELEFALDARDSEELDRLDAALRRIEDGSYGL--CVDCGVGIPAARLHAAPDALRCIAC 112 Query: 62 QAYQERQR 69 Q E+ + Sbjct: 113 QEKLEKAQ 120 >UniRef50_Q0AHN9 Transcriptional regulators, TraR/DksA family protein n=3 Tax=Proteobacteria RepID=Q0AHN9_NITEC Length = 135 Score = 39.7 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 + EA + + + I +I + C CG P+ R +P C CQ Sbjct: 64 DITEAEVIRDIGEVRDIVAAEDRIATGKYGL--CIDCGEPVRYKRLDAYPTAKRCFTCQV 121 Query: 64 YQER 67 +ER Sbjct: 122 RRER 125 >UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 Tax=Ralstonia RepID=B2UIX3_RALPJ Length = 120 Score = 39.7 bits (91), Expect = 0.030, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 ++ ++ V + + +N R+++ H +C CG IP R + P C+ C Sbjct: 54 GEQTNDVMLVRYRSELEQLNAARERMQQHSYG--ICVDCGEAIPFLRLQAQPTAMRCLPC 111 Query: 62 QAYQERQ 68 Q ER+ Sbjct: 112 QTACERR 118 >UniRef50_Q12EM6 Transcriptional regulators, TraR/DksA family n=65 Tax=Betaproteobacteria RepID=Q12EM6_POLSJ Length = 450 Score = 39.7 bits (91), Expect = 0.030, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 13/82 (15%) Query: 2 SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50 D AD A E I + +I++ C+ G PI R Sbjct: 369 PDPADRATIEEEHALELRTRDRERKLLKKIEQSIARIDSGDYG--YCDETGEPIGVGRLI 426 Query: 51 IFPGVTLCVECQAYQERQRKHY 72 P L +E Q +E ++K + Sbjct: 427 ARPTANLSLEAQQRRELKQKMF 448 >UniRef50_Q21SV6 Transcriptional regulators, TraR/DksA family n=58 Tax=Betaproteobacteria RepID=Q21SV6_RHOFD Length = 429 Score = 39.7 bits (91), Expect = 0.032, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 13/82 (15%) Query: 2 SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50 D AD A E I + +I++ C+ G I R Sbjct: 348 PDPADRATIEEEHALELRTRDRERKLLKKIEQSLARIDSGDYG--YCDETGEAIGVGRLL 405 Query: 51 IFPGVTLCVECQAYQERQRKHY 72 P L +E Q +E ++K + Sbjct: 406 ARPTANLSLEAQQRRELKQKMF 427 >UniRef50_C6C0K2 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0K2_DESAD Length = 116 Score = 39.3 bits (90), Expect = 0.034, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 16/31 (51%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 +CE CG I AR K P CV CQ+ E Sbjct: 78 ICEDCGEEIALARIKANPTTRFCVSCQSRME 108 >UniRef50_D1UB56 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UB56_9DELT Length = 116 Score = 39.3 bits (90), Expect = 0.034, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 9/77 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIR-QKINAHGIPVYL--------CEACGNPIPEARRKIF 52 DE D A + +Q + R R +I + + C+ CG+PI AR K Sbjct: 35 PDETDFATQLAQQGVNLAMQRRRMARIKEYECAIKRLRETDYGTCDECGDPIGLARLKAN 94 Query: 53 PGVTLCVECQAYQERQR 69 P LC+ CQ+ E + Sbjct: 95 PSARLCIVCQSAAEEED 111 >UniRef50_D0LUD2 Transcriptional regulator, TraR/DksA family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUD2_HALO1 Length = 127 Score = 39.3 bits (90), Expect = 0.036, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 E + I+ +++ A I CE CG I R P TLC++C++ +E+ Sbjct: 64 ETFLLNKIDAALERLKAGTID--ECEECGGEISVQRLIARPVTTLCIDCKSEREQ 116 >UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacteria RepID=A8PLZ9_9COXI Length = 295 Score = 39.3 bits (90), Expect = 0.036, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 9/80 (11%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYL---------CEACGNPIPEARRKI 51 + D +D A E +K+ C +CG I R + Sbjct: 213 LPDMSDRATQEEEFNLELRARDRERKLIKKIEDALHQLDEGHYGFCSSCGVEIGIRRLEA 272 Query: 52 FPGVTLCVECQAYQERQRKH 71 P LC++C+ E + K Sbjct: 273 RPTANLCIDCKTLDEIREKQ 292 >UniRef50_A3IED4 DnaK suppressor protein n=2 Tax=Bacillaceae RepID=A3IED4_9BACI Length = 150 Score = 39.3 bits (90), Expect = 0.036, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 9/73 (12%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVY---------LCEACGNPIPEARRKIFP 53 AD A +T+QLT I+ R C CG IP R + P Sbjct: 41 HPADNASDLTDQLTEMAIDEHRGDNAEEIKEALQAMADGTYGECTVCGKEIPIGRLEAMP 100 Query: 54 GVTLCVECQAYQE 66 CVE +E Sbjct: 101 QALTCVEHAEKKE 113 >UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXX5_9PROT Length = 123 Score = 39.3 bits (90), Expect = 0.037, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 E+ + I++ ++I C+ACG PI R + P TLC+EC+ QE++ + Sbjct: 64 ERRLIKKIDQAIERIQNGEFG--ECDACGGPISVKRLEARPVTTLCIECKTAQEQEER 119 >UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q12HC6_POLSJ Length = 130 Score = 39.3 bits (90), Expect = 0.038, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%) Query: 5 ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64 + +Q + I + ++++ C CG PIP R K P + C+ CQ Sbjct: 60 LEHVDLQRDQEELRAIQQAQERMADGSYGG--CIDCGQPIPFERLKAQPSASRCIACQTR 117 Query: 65 QER 67 E+ Sbjct: 118 FEQ 120 >UniRef50_C0QW50 DNA-binding transcriptional regulator of transcription, DnaK suppressor protein n=2 Tax=Brachyspira RepID=C0QW50_BRAHW Length = 121 Score = 39.3 bits (90), Expect = 0.040, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 10 SVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 S E+ + +N ++I C C I E R P CV C + E ++ Sbjct: 59 SQKEKDKLDMLNNALKRIEEGTYGK--CIDCKEEINEERLTALPYTLRCVNCMSKYEDKK 116 Query: 70 K 70 + Sbjct: 117 R 117 >UniRef50_Q1AWF1 Transcriptional regulators, TraR/DksA family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AWF1_RUBXD Length = 130 Score = 39.3 bits (90), Expect = 0.040, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E D + + + + R QKI V C+ G PIP+ R + P VE Q Sbjct: 63 EMDATVGLQTRRRLEDVERALQKIEEGTYGV--CDDTGEPIPKGRLEAMPEAIRTVEAQQ 120 Query: 64 YQERQRK 70 +R R+ Sbjct: 121 RHDRVRR 127 >UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KE71_ELUMP Length = 258 Score = 39.3 bits (90), Expect = 0.040, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 18 TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 I +KI+ CE C +P+ R K P CV CQ+ +E Sbjct: 210 DQIESALRKIDKGIYGK--CENCRQLLPKKRIKALPFARYCVVCQSSKE 256 >UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5L2_SPHTD Length = 132 Score = 39.3 bits (90), Expect = 0.041, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 16/33 (48%) Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 C CG I AR K P T C+ CQ + E + Sbjct: 98 CIDCGEMIDPARLKALPTATRCLRCQTHFEYRT 130 >UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 Tax=Geobacter RepID=B3EAN1_GEOLS Length = 218 Score = 39.3 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 9/79 (11%) Query: 2 SDEADEAYSVTEQLTMTGIN-RIRQKINAHGIPVY--------LCEACGNPIPEARRKIF 52 D D+A S ++ +N R R+K+++ + +CE C IP R K+ Sbjct: 119 GDIYDQASSERDRELGLLLNDREREKLHSIDEALLRIAEGEYGICEECDEDIPMGRLKVL 178 Query: 53 PGVTLCVECQAYQERQRKH 71 P CV+C++ E+ + Sbjct: 179 PFTRHCVKCKSDLEKFQAQ 197 >UniRef50_Q39WX5 Transcriptional regulators, TraR/DksA family n=4 Tax=Geobacter RepID=Q39WX5_GEOMG Length = 130 Score = 39.3 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIFPGVTLCVEC 61 D ++ + + R+ + + Y C+ CG I E R ++ P C+ C Sbjct: 56 DTLEDTGMAVADIRRQELTRMDEALGRLKEGRYGFCDECGAEIDEGRLRVAPYAPCCISC 115 Query: 62 QAYQE 66 Q +E Sbjct: 116 QTRRE 120 >UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AEFD73 Length = 111 Score = 39.3 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 +D+ + +T I+ +++ C+ CG IP R +I P CV C Sbjct: 49 ADDLLMMQKYAVRQALTDIDAAFTRLDEGTYGT--CQGCGRDIPVERLEILPYARCCVPC 106 Query: 62 QA 63 Q Sbjct: 107 QQ 108 >UniRef50_C0ZG84 Putative uncharacterized protein yteA n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZG84_BREBN Length = 257 Score = 39.3 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 E D A ++ T+ I++ Q++ + C CG IP R + P C E Sbjct: 63 EKDLALDSLDRETLKEIDQALQRMEEGTYGL--CTVCGEQIPVERLEALPQSQTCKE 117 >UniRef50_A3RXC3 DnaK suppressor protein n=1 Tax=Ralstonia solanacearum UW551 RepID=A3RXC3_RALSO Length = 224 Score = 38.9 bits (89), Expect = 0.044, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 13/82 (15%) Query: 2 SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50 D AD A E + + Q+I+ C+ G PI R Sbjct: 143 PDPADRATIEEEHALELRTRDRERKLLKKVEQSIQRIDEGNYG--YCDETGEPIGVPRLL 200 Query: 51 IFPGVTLCVECQAYQERQRKHY 72 P TL +E Q +E+++K + Sbjct: 201 ARPTATLTLEAQERREKRQKLF 222 >UniRef50_Q473A0 Zn-finger, prokaryotic DksA/TraR C4 type n=3 Tax=Cupriavidus RepID=Q473A0_RALEJ Length = 124 Score = 38.9 bits (89), Expect = 0.045, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 13/76 (17%) Query: 3 DEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRKI 51 D+AD A Q I R+++ A C CG IP +R + Sbjct: 44 DDADLAEEEVVQRQADAMLEHYRTELADIRAARERMKAGQYGT--CTDCGEAIPYSRLQA 101 Query: 52 FPGVTLCVECQAYQER 67 +P C +CQ ER Sbjct: 102 YPTARRCADCQRGHER 117 >UniRef50_C1I8K1 Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I8K1_9CLOT Length = 204 Score = 38.9 bits (89), Expect = 0.046, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 7 EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64 A E+ + I+ + I+ C+ CG I + R P C+EC+ Sbjct: 64 RALEANERALLDKIDDAVRAIDEGSYGK--CQKCGKEIDKERLDFLPYALNCIECEDV 119 >UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 Tax=Rhodopirellula baltica RepID=Q7UEL7_RHOBA Length = 121 Score = 38.9 bits (89), Expect = 0.046, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 + E + +E + I +++ CE CG IP R ++ P CV C Sbjct: 52 ASELTSRMAESESRELADIEEALERLRDGTFG--DCEDCGKSIPMNRLQVVPHARRCVRC 109 Query: 62 QAYQE 66 Q E Sbjct: 110 QKASE 114 >UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 Tax=Nautilia profundicola AmH RepID=B9L783_NAUPA Length = 117 Score = 38.9 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 11 VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 + ++ + IN +KI+ +CE C +PI EAR KI P C+ C+ E++ K Sbjct: 60 INQKKELEEINDALKKIDEGTFG--ICEMCEDPIQEARLKIKPYAKYCIICREIIEKEGK 117 >UniRef50_A1VGY3 Transcriptional regulator, TraR/DksA family n=4 Tax=Desulfovibrio vulgaris RepID=A1VGY3_DESVV Length = 113 Score = 38.9 bits (89), Expect = 0.050, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%) Query: 5 ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 +E T + + G+ +++ C CG IP AR P + CV C Sbjct: 55 VNEVALATARKRLAGLEYAVKRLGDDDPEYGYCVECGEAIPFARLMSMPEASRCVNCAE 113 >UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2 Tax=Planctomycetaceae RepID=D2R7B0_9PLAN Length = 123 Score = 38.9 bits (89), Expect = 0.050, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 18 TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 I ++I A V C CG IP+AR ++ P CV+C + Sbjct: 75 EQIEAALERIEAGAYGV--CTECGCKIPKARLEVLPYTAHCVKCAEKASPR 123 >UniRef50_Q2NBT1 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NBT1_ERYLH Length = 104 Score = 38.9 bits (89), Expect = 0.053, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 6 DEAYSVTEQLTMTGINRIRQKINA-HGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 DEA + + I ++R + C CG PIP+ R + P T C++C Sbjct: 47 DEALEGVDDVLRAEIQQVRYALARIENGSYGTCAKCGEPIPKERLEARPIATRCIKC 103 >UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter RepID=C5EYJ0_9HELI Length = 119 Score = 38.9 bits (89), Expect = 0.053, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%) Query: 20 INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 I R +KI +CE C PI R K P C+ C+ E+ Sbjct: 68 IERALEKIENGEYG--ICEMCDEPISIQRLKAKPHARFCIICREIVEK 113 >UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family n=1 Tax=Treponema denticola RepID=Q73KX9_TREDE Length = 119 Score = 38.9 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 14 QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 Q + + RIR+ C C IPE R K P C+ CQA E++ Sbjct: 68 QKIDSALERIREGKYGK------CITCKEQIPEDRLKALPYALKCIHCQAKSEKK 116 >UniRef50_A6FZV7 Transcriptional regulator, TraR/DksA family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FZV7_9DELT Length = 130 Score = 38.9 bits (89), Expect = 0.054, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+ + + + I I+ +CE C PI R ++ P V++CV+ Sbjct: 49 MTQSIASSRNRERAQKLAAIREALLLIDEDPEEYGMCEDCEEPIKRRRLELMPWVSVCVQ 108 Query: 61 CQAYQERQRK 70 CQ +ER + Sbjct: 109 CQEKRERDGR 118 >UniRef50_C3XG00 DnaK suppressor protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XG00_9HELI Length = 122 Score = 38.5 bits (88), Expect = 0.058, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Query: 5 ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64 D++ Q M I+ K + +CE C + I R + P C+ C+ Sbjct: 54 FDDSMLERNQKEMKEISASLAKFDDGIYG--ICEMCEDEIGIERLQAKPHARFCINCREI 111 Query: 65 QERQRKH 71 E+ K Sbjct: 112 YEKSEKQ 118 >UniRef50_A0LSA0 Transcriptional regulators, TraR/DksA family n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSA0_ACIC1 Length = 113 Score = 38.5 bits (88), Expect = 0.060, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 3 DEADEAYSVT----EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 D AD A + Q + Q+I + C +CG P+PE R + P C Sbjct: 45 DLADHARATALLEVAQEQRRQVLEALQRIENGTYGL--CVSCGAPLPEGRLEAKPEAARC 102 Query: 59 VECQAYQE 66 + CQA E Sbjct: 103 LSCQAKLE 110 >UniRef50_A4BMT6 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BMT6_9GAMM Length = 132 Score = 38.5 bits (88), Expect = 0.063, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 2/50 (4%) Query: 20 INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 I +K+ C CG I R + P V C CQ E++ Sbjct: 77 IEAALRKLADGSYG--YCMDCGEAIAAQRLQANPAVARCYACQTRFEQEE 124 >UniRef50_Q7MQQ3 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes RepID=Q7MQQ3_WOLSU Length = 113 Score = 38.5 bits (88), Expect = 0.065, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 36 LCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 +C+ C PIP R P T+CV+C + Sbjct: 83 ICQICDEPIPYKRLFALPEATICVDCANER 112 >UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V318_9AQUI Length = 133 Score = 38.5 bits (88), Expect = 0.067, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 20 INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 I+ ++I+ CE CG PI E R + P TLC E E+ Sbjct: 53 IDEALERISEGTYG--YCEVCGKPIEEERLEAIPWTTLCTEHAKEAEK 98 >UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2 Tax=Nitrosomonadaceae RepID=Q2YD37_NITMU Length = 131 Score = 38.5 bits (88), Expect = 0.070, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 15/35 (42%) Query: 37 CEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71 C CG I R ++P CV CQ E+ H Sbjct: 91 CIDCGGEIGFDRLMVYPTAQRCVRCQEVHEKTYMH 125 >UniRef50_A1VFA5 Transcriptional regulator, TraR/DksA family n=3 Tax=Desulfovibrio vulgaris RepID=A1VFA5_DESVV Length = 118 Score = 38.5 bits (88), Expect = 0.071, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 8/74 (10%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVY--------LCEACGNPIPEARRKIFPG 54 D+ + + I +++ ++ + + C+ CG+ I R P Sbjct: 41 DDVEHRQVFSMAEQRANIEQLKGRLRSLRTALARTDDEEFGWCDECGDAIGVQRLLSVPT 100 Query: 55 VTLCVECQAYQERQ 68 LC+ C +E Q Sbjct: 101 TRLCIACARRREDQ 114 >UniRef50_B8J2D3 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J2D3_DESDA Length = 130 Score = 38.5 bits (88), Expect = 0.073, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 9/75 (12%) Query: 2 SDEADEAYSVTEQLTMTG-INRIRQKIN--------AHGIPVYLCEACGNPIPEARRKIF 52 SDEAD A + R Q+I+ C CG IP R Sbjct: 34 SDEADAASHMEAAYIACCRARRSVQRIHDLERLLHLLRHNGPRQCVDCGEDIPLKRLVAA 93 Query: 53 PGVTLCVECQAYQER 67 PG C CQ +ER Sbjct: 94 PGTVRCFSCQQQEER 108 >UniRef50_D2MJ83 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJ83_9BACT Length = 123 Score = 38.5 bits (88), Expect = 0.075, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 16 TMTGINRIRQKINAHGIPVYL-----CEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 NR RQ I+ + + C C I E R + P LCVECQ E K Sbjct: 56 LQEKRNRERQMIDEALVSLEEGTYGICVECNTEISEKRLAVMPFARLCVECQEKIELLEK 115 >UniRef50_A4TVR6 DnaK suppressor protein n=3 Tax=Magnetospirillum RepID=A4TVR6_9PROT Length = 76 Score = 38.2 bits (87), Expect = 0.076, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 1/70 (1%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D+ D A + + + + + +C ACG I R + P C EC Sbjct: 2 DDIDCAAERIDAFNAVALQAVLAR-TSGAPSSGICRACGCDIEPERLRATPHARHCKECA 60 Query: 63 AYQERQRKHY 72 A E + + + Sbjct: 61 AEIEAENRRH 70 >UniRef50_B6R7R7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7R7_9RHOB Length = 118 Score = 38.2 bits (87), Expect = 0.085, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+ D + Q + RI+++ C CG IPEAR ++ P CV Sbjct: 59 MAQANDRQRARELQRIDGALQRIKEEEYG------FCLECGEDIPEARLRVDPAALYCVS 112 Query: 61 CQAY 64 C Sbjct: 113 CAKL 116 >UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP2_OCEIH Length = 224 Score = 38.2 bits (87), Expect = 0.087, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 3/52 (5%) Query: 9 YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 TE+ IN I +C CG IP R + P CV+ Sbjct: 68 QEHTEKELED-INAALHAIEEGTYG--ICTVCGEDIPHERLEAIPTTDRCVK 116 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI 88 1e-16 UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacter... 78 8e-14 UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escheri... 77 1e-13 UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Co... 77 2e-13 UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region ... 76 2e-13 UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 ... 76 3e-13 UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region ... 76 3e-13 UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phag... 76 4e-13 UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterob... 75 5e-13 UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger pro... 75 7e-13 UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 ... 75 9e-13 UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger prot... 74 1e-12 UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B... 74 1e-12 UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4 74 2e-12 UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus ... 73 2e-12 UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q6... 73 2e-12 UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34... 73 3e-12 UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1... 72 5e-12 UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyce... 72 5e-12 UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14... 71 1e-11 UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=... 71 1e-11 UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammapro... 71 2e-11 UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 ... 70 2e-11 UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 ... 70 2e-11 UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=... 70 2e-11 UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=... 70 3e-11 UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 ... 70 3e-11 UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio ... 70 3e-11 UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB... 70 3e-11 UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 ... 70 3e-11 UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiob... 69 4e-11 UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 ... 69 5e-11 UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 ... 68 8e-11 UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family pr... 68 8e-11 UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibr... 68 8e-11 UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID... 68 9e-11 UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas Rep... 68 9e-11 UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 ... 68 9e-11 UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria R... 68 1e-10 UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12... 67 2e-10 UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7... 67 2e-10 UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylo... 67 2e-10 UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1... 66 2e-10 UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilu... 66 2e-10 UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotom... 66 2e-10 UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 ... 66 3e-10 UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingell... 66 3e-10 UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobac... 66 3e-10 UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11... 66 3e-10 UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomyc... 66 3e-10 UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 ... 66 4e-10 UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Helioba... 66 4e-10 UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1 ... 66 4e-10 UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax... 66 5e-10 UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacte... 66 5e-10 UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1... 65 5e-10 UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteo... 65 5e-10 UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 ... 65 6e-10 UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=... 65 7e-10 UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7 ... 65 7e-10 UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2 ... 65 7e-10 UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 ... 65 9e-10 UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 ... 65 1e-09 UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmone... 65 1e-09 UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepI... 64 1e-09 UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_... 64 1e-09 UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5... 64 1e-09 UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD 64 2e-09 UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campy... 64 2e-09 UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 ... 64 2e-09 UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomyc... 64 2e-09 UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 ... 64 2e-09 UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 ... 63 2e-09 UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID... 63 2e-09 UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 ... 63 2e-09 UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemm... 63 3e-09 UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10... 63 4e-09 UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 ... 63 4e-09 UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 ... 63 4e-09 UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35... 62 4e-09 UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobact... 62 4e-09 UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 ... 62 5e-09 UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 ... 62 5e-09 UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastop... 62 6e-09 UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8... 62 6e-09 UniRef50_A7ZJE9 Phage/conjugal plasmid C-4 type zinc finger prot... 62 7e-09 UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovib... 62 7e-09 UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YT... 61 7e-09 UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsi... 61 8e-09 UniRef50_Q2LQQ9 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 61 9e-09 UniRef50_C4LBC7 Transcriptional regulator, TraR/DksA family n=1 ... 61 1e-08 UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD 61 1e-08 UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acineto... 61 1e-08 UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD 61 2e-08 UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera a... 61 2e-08 UniRef50_Q52PP5 Putative uncharacterized protein n=1 Tax=Xanthom... 61 2e-08 UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 ... 61 2e-08 UniRef50_P44221 Uncharacterized protein HI1497 n=3 Tax=Haemophil... 60 2e-08 UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 ... 60 2e-08 UniRef50_B3B1J8 Conserved domain protein n=5 Tax=Gammaproteobact... 60 3e-08 UniRef50_Q8EDR9 C4-type zinc finger protein, DksA/TraR family n=... 60 4e-08 UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n... 59 4e-08 UniRef50_A1F607 Conserved domain protein n=3 Tax=Vibrio cholerae... 59 4e-08 UniRef50_A4XZG1 Transcriptional regulator, TraR/DksA family n=1 ... 59 4e-08 UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 ... 59 4e-08 UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acineto... 59 4e-08 UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclass... 59 5e-08 UniRef50_Q06424 Uncharacterized 8.2 kDa protein in gpA 5'region ... 59 5e-08 UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium... 58 7e-08 UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 ... 58 8e-08 UniRef50_C5S4P2 Putative uncharacterized protein n=2 Tax=Pasteur... 58 9e-08 UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenter... 58 9e-08 UniRef50_A5EYQ4 DksA-like zinc finger domain containing protein ... 57 1e-07 UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 T... 57 1e-07 UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromono... 57 2e-07 UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptosp... 57 2e-07 UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum... 57 2e-07 UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordete... 57 2e-07 UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,p... 57 2e-07 UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 ... 56 3e-07 UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1... 56 3e-07 UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomon... 55 7e-07 UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1... 55 9e-07 UniRef50_A4NCL4 Putative uncharacterized protein n=1 Tax=Haemoph... 55 9e-07 UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 ... 54 1e-06 UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3... 54 1e-06 UniRef50_B9JYG7 DnaK suppressor protein n=2 Tax=Agrobacterium vi... 54 2e-06 UniRef50_Q2SPX6 DnaK suppressor protein n=1 Tax=Hahella chejuens... 52 7e-06 Sequences not found previously or not previously below threshold: UniRef50_Q21SV6 Transcriptional regulators, TraR/DksA family n=5... 71 1e-11 UniRef50_Q12EM6 Transcriptional regulators, TraR/DksA family n=6... 67 2e-10 UniRef50_A3RXC3 DnaK suppressor protein n=1 Tax=Ralstonia solana... 65 6e-10 UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 ... 64 1e-09 UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carbo... 64 2e-09 UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria... 64 2e-09 UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacte... 63 2e-09 UniRef50_A4J571 Transcriptional regulator, TraR/DksA family n=1 ... 63 2e-09 UniRef50_B1I4J4 Transcriptional regulator, TraR/DksA family n=1 ... 63 3e-09 UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 ... 62 5e-09 UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253... 62 7e-09 UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1 ... 62 7e-09 UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobact... 61 1e-08 UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gamm... 61 1e-08 UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 ... 61 1e-08 UniRef50_A7HW84 Transcriptional regulator, TraR/DksA family n=68... 60 2e-08 UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopi... 60 2e-08 UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=... 60 2e-08 UniRef50_B4SQA3 Transcriptional regulator, TraR/DksA family n=35... 59 4e-08 UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 ... 59 5e-08 UniRef50_B9XR79 Transcriptional regulator, TraR/DksA family n=1 ... 59 5e-08 UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 ... 59 6e-08 UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria R... 58 6e-08 UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 ... 58 6e-08 UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gr... 58 7e-08 UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 ... 58 8e-08 UniRef50_Q6SHS2 DnaK suppressor protein n=1 Tax=uncultured marin... 58 9e-08 UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 ... 58 9e-08 UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 ... 58 1e-07 UniRef50_C1I8K1 Putative uncharacterized protein n=1 Tax=Clostri... 58 1e-07 UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1... 58 1e-07 UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 ... 57 1e-07 UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces lim... 57 1e-07 UniRef50_Q31G85 Transcriptional regulators, TraR/DksA family n=1... 57 2e-07 UniRef50_B0K2T3 Transcriptional regulator, TraR/DksA family n=10... 57 2e-07 UniRef50_B6BSH6 DnaK suppressor protein n=6 Tax=Bacteria RepID=B... 57 2e-07 UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Ther... 57 2e-07 UniRef50_UPI0001788757 transcriptional regulator, TraR/DksA fami... 57 2e-07 UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3... 57 2e-07 UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family pro... 57 2e-07 UniRef50_D1CBT8 Transcriptional regulator, TraR/DksA family n=1 ... 56 3e-07 UniRef50_B1H0G2 Putative dnaK suppressor n=1 Tax=uncultured Term... 56 3e-07 UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 ... 56 3e-07 UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11... 56 4e-07 UniRef50_A8EWK7 DnaK suppressor protein DksA n=1 Tax=Arcobacter ... 56 4e-07 UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia Re... 56 4e-07 UniRef50_C0QW50 DNA-binding transcriptional regulator of transcr... 56 4e-07 UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR fa... 56 5e-07 UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3... 56 5e-07 UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 ... 56 5e-07 UniRef50_Q2B4E3 Putative uncharacterized protein n=4 Tax=Bacillu... 55 5e-07 UniRef50_A4V7S0 Putative transcriptional regulator DnaK suppress... 55 6e-07 UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 ... 55 6e-07 UniRef50_C6D536 Transcriptional regulator, TraR/DksA family n=2 ... 55 6e-07 UniRef50_C9S0U4 Transcriptional regulator, TraR/DksA family n=14... 55 6e-07 UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candida... 55 6e-07 UniRef50_C0ZG84 Putative uncharacterized protein yteA n=1 Tax=Br... 55 7e-07 UniRef50_Q0A892 Transcriptional regulators, TraR/DksA family n=1... 55 8e-07 UniRef50_A0RK79 DnaK suppressor protein n=74 Tax=Bacillus RepID=... 55 8e-07 UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificac... 55 9e-07 UniRef50_Q0VNX0 DnaK suppressor protein homolog, DksA/TraR famil... 55 9e-07 UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 ... 55 9e-07 UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2 ... 55 9e-07 UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 ... 55 9e-07 UniRef50_B4D2T0 Transcriptional regulator, TraR/DksA family n=1 ... 55 1e-06 UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=... 55 1e-06 UniRef50_Q1GI88 Transcriptional regulators TraR/DksA family n=26... 55 1e-06 UniRef50_Q2GI38 DnaK suppressor protein n=9 Tax=Anaplasmataceae ... 55 1e-06 UniRef50_C1F3S7 Putative RNA polymerase-binding protein DksA n=1... 55 1e-06 UniRef50_A0LCU1 Transcriptional regulator, TraR/DksA family n=2 ... 54 1e-06 UniRef50_Q2SLB9 DnaK suppressor protein n=7 Tax=Gammaproteobacte... 54 1e-06 UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 ... 54 1e-06 UniRef50_C3XG00 DnaK suppressor protein n=1 Tax=Helicobacter bil... 54 1e-06 UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 ... 54 1e-06 UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuens... 54 1e-06 UniRef50_D0LUD2 Transcriptional regulator, TraR/DksA family n=1 ... 54 1e-06 UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family ... 54 1e-06 UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmati... 54 2e-06 UniRef50_B2A2J0 Transcriptional regulator, TraR/DksA family n=1 ... 54 2e-06 UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 ... 54 2e-06 UniRef50_Q1Q506 Similar to DnaK suppressor protein n=1 Tax=Candi... 54 2e-06 UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 ... 54 2e-06 UniRef50_Q39WX5 Transcriptional regulators, TraR/DksA family n=4... 54 2e-06 UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 ... 53 2e-06 UniRef50_P80872 General stress protein 16O n=2 Tax=Bacillus subt... 53 2e-06 UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 ... 53 2e-06 UniRef50_A6Q9W6 DnaK suppressor protein DksA n=1 Tax=Sulfurovum ... 53 2e-06 UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 ... 53 2e-06 UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 ... 53 2e-06 UniRef50_A0AZX7 Transcriptional regulators, TraR/DksA family n=3... 53 2e-06 UniRef50_C6J3C7 DnaK suppressor protein n=2 Tax=Bacillales RepID... 53 2e-06 UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Plancto... 53 3e-06 UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1... 53 3e-06 UniRef50_A6DCX4 Transcriptional regulator, TraR/DksA family prot... 53 3e-06 UniRef50_Q01TC0 Transcriptional regulator, TraR/DksA family n=1 ... 53 3e-06 UniRef50_Q1AWF1 Transcriptional regulators, TraR/DksA family n=1... 53 3e-06 UniRef50_B8H0C0 DnaK suppressor protein homolog n=110 Tax=Bacter... 53 3e-06 UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1... 53 3e-06 UniRef50_Q7VGT4 DnaK suppressor protein DskA n=2 Tax=Helicobacte... 53 3e-06 UniRef50_B0SIE7 DnaK suppressor protein n=6 Tax=Leptospira RepID... 53 3e-06 UniRef50_B2ULP7 Transcriptional regulator, TraR/DksA family n=1 ... 53 3e-06 UniRef50_A0RMM0 Transcriptional regulators, TraR/DksA family n=9... 53 3e-06 UniRef50_UPI0001AEC064 DnaK suppressor protein n=1 Tax=Alteromon... 53 4e-06 UniRef50_B4UII3 Transcriptional regulator, TraR/DksA family n=4 ... 53 4e-06 UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 ... 53 4e-06 UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 ... 53 4e-06 UniRef50_A4G7K6 Putative uncharacterized protein n=1 Tax=Hermini... 53 4e-06 UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2... 52 5e-06 UniRef50_D1UB56 Transcriptional regulator, TraR/DksA family n=1 ... 52 5e-06 UniRef50_C6HWS3 Transcriptional regulator, TraR/DksA family n=3 ... 52 5e-06 UniRef50_Q2W8C2 Putative uncharacterized protein n=1 Tax=Magneto... 52 5e-06 UniRef50_B1J6V4 Transcriptional regulator, TraR/DksA family n=4 ... 52 6e-06 UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter Rep... 52 6e-06 UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax... 52 6e-06 UniRef50_D1C0D4 Transcriptional regulator, TraR/DksA family n=2 ... 52 7e-06 UniRef50_Q1JWV8 Transcriptional regulators, TraR/DksA family n=1... 52 7e-06 UniRef50_P42408 Uncharacterized protein yteA n=2 Tax=Bacillus su... 52 7e-06 UniRef50_D2B0C3 Transcriptional regulator, TraR/DksA family n=1 ... 52 7e-06 UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobac... 52 7e-06 UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydroge... 52 7e-06 UniRef50_B1ZV03 Transcriptional regulator, TraR/DksA family n=2 ... 52 7e-06 UniRef50_C9R760 Putative uncharacterized protein n=1 Tax=Aggrega... 51 8e-06 >UniRef50_P41065 Protein traR n=37 Tax=root RepID=TRAR_ECOLI Length = 73 Score = 87.7 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 73/73 (100%), Positives = 73/73 (100%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE Sbjct: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 Query: 61 CQAYQERQRKHYA 73 CQAYQERQRKHYA Sbjct: 61 CQAYQERQRKHYA 73 >UniRef50_A6T2Z9 DnaK suppressor protein n=5 Tax=Betaproteobacteria RepID=A6T2Z9_JANMA Length = 310 Score = 78.0 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 9/80 (11%) Query: 2 SDEADEAYSVTEQLTMTGIN----RIRQKINAHGIP-----VYLCEACGNPIPEARRKIF 52 D AD A E ++ +K+ + CE G PI R Sbjct: 229 PDPADRATIEEEHALELRTRDRERKLLKKVQQSLLSIDSGEYGWCEETGEPIGVPRLLAR 288 Query: 53 PGVTLCVECQAYQERQRKHY 72 P TL +E Q +E ++K Y Sbjct: 289 PTATLSLEAQQRRELKQKLY 308 >UniRef50_Q3ZL39 Putative uncharacterized protein n=1 Tax=Escherichia blattae RepID=Q3ZL39_ESCBL Length = 76 Score = 77.3 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+ D A + + +N+ +++ C C PIP AR + P CV Sbjct: 1 MTKAFDRASDLEMEERERLLNKHLRRVKELPESYGFCNDCEQPIPAARLQALPDAVTCVT 60 Query: 61 CQAYQERQRKH 71 CQA +E +RKH Sbjct: 61 CQAIREHRRKH 71 >UniRef50_A1JNK3 Hypothetical 8.2 kDa protein in gpa 5'region (Conserved hypothetical phage protein) n=1 Tax=Yersinia enterocolitica subsp. enterocolitica 8081 RepID=A1JNK3_YERE8 Length = 74 Score = 76.9 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M D D A E L I + R K ++C +C IPE RR PGV CV Sbjct: 1 MPDLMDIAQERQEMLLAMQIAKARSKPITA--SAFICASCEAEIPEQRRITVPGVIFCVA 58 Query: 61 CQAYQERQRKHY 72 CQ E ++KHY Sbjct: 59 CQQLHEEKKKHY 70 >UniRef50_P41059 Uncharacterized 8.5 kDa protein in gpA 5'region n=40 Tax=root RepID=CP80_BP186 Length = 75 Score = 76.5 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D A ++ I+ R + + + ++CE C PIPEARR+ PGV CV Sbjct: 1 MADAMDLAQLREQEDRERHISNARSRRHE--VSAFICEECDAPIPEARRRAIPGVQCCVT 58 Query: 61 CQAYQERQRKHY 72 CQ E + KHY Sbjct: 59 CQEILELKSKHY 70 >UniRef50_C6MQY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Geobacter sp. M18 RepID=C6MQY5_9DELT Length = 74 Score = 76.5 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+DE D A ++E+ + + CE CG PIPE RR+ PG T CV Sbjct: 1 MADEIDLAQEISERHLEAALAGHLDH-KPAAESLTHCEECGRPIPEGRRQAQPGCTRCVR 59 Query: 61 CQAYQE 66 CQ+ E Sbjct: 60 CQSGIE 65 >UniRef50_C9XYU8 Uncharacterized 8.5 kDa protein in gpA 5'region n=4 Tax=Enterobacteriaceae RepID=C9XYU8_CROTZ Length = 74 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D E+ I++ R + +LCE+C PIPEARR PGV LCV Sbjct: 1 MADVMDLVQQRVEEERERHIHKARSR--QAAPSRFLCESCNGPIPEARRAALPGVELCVT 58 Query: 61 CQAYQERQRKHY 72 CQ +E + HY Sbjct: 59 CQEIKELKSLHY 70 >UniRef50_A2I309 Conjugative transfer protein n=1 Tax=Vibrio phage VP882 RepID=A2I309_9CAUD Length = 73 Score = 76.1 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 39/71 (54%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MSD AD+A V EQ + + IN C+ C + IPEARR+ PGV LCV+ Sbjct: 1 MSDIADQAQDVIEQHLTASLANRKHNINPAIPSAKHCDDCESEIPEARRRSLPGVRLCVD 60 Query: 61 CQAYQERQRKH 71 C + QE + +H Sbjct: 61 CASLQEIKGRH 71 >UniRef50_UPI0001827371 putative prophage protein n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001827371 Length = 73 Score = 75.3 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D A + ++ I+ R++ + +LCE C PIPEARR PGV LC+ Sbjct: 1 MADFIDLAQAREQEDRERHIHHARRRPAS--PSRFLCEECDAPIPEARRMAVPGVALCIT 58 Query: 61 CQAYQERQRKH 71 CQ E + KH Sbjct: 59 CQEIAEMKNKH 69 >UniRef50_B8F4E6 DnaK suppressor protein/ C4-type zinc finger protein, DksA/TraR family n=8 Tax=root RepID=B8F4E6_HAEPS Length = 72 Score = 74.9 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M D+ D A + E+ + ++R K A + CE C PIPEARR+ G T C++ Sbjct: 1 MKDQIDRANELAEKEREFALAKLRNKPTA--CSLIHCEDCDEPIPEARRQNVQGCTRCID 58 Query: 61 CQAYQERQRKHY 72 CQ E ++K Y Sbjct: 59 CQQIYEYKQKGY 70 >UniRef50_D2BWU8 Transcriptional regulator, TraR/DksA family n=4 Tax=Enterobacteriaceae RepID=D2BWU8_DICD5 Length = 69 Score = 74.6 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M DE D EQ I + R K ++ C CG PIPE RR+ PGVT C E Sbjct: 1 MPDEIDRDQEFNEQRLEEMIEQNRFKPAT-TPSLHYCRLCGEPIPEKRRQTLPGVTTCTE 59 Query: 61 CQAYQERQRK 70 CQA ER+++ Sbjct: 60 CQAIIERRQR 69 >UniRef50_B5XPP1 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family n=14 Tax=Enterobacteriaceae RepID=B5XPP1_KLEP3 Length = 69 Score = 74.2 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M DE D EQ I + R K ++ C CG PIPE RR+ PG+T C E Sbjct: 1 MPDEIDRDQEFNEQRLEEMIEQSRFKP-GSAPSLFHCRVCGKPIPEKRRQTLPGITTCKE 59 Query: 61 CQAYQERQR 69 CQ ER Sbjct: 60 CQEKLERHS 68 >UniRef50_B4F0L8 Phage protein n=4 Tax=Enterobacteriaceae RepID=B4F0L8_PROMH Length = 73 Score = 74.2 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MS E D A ++ L I + + G+ + CE CG IPE RR G T C + Sbjct: 1 MSKEMDLACEQSQLLLDKQIKAVTGR--YIGVSAFECEDCGREIPEKRRIAVMGCTRCAD 58 Query: 61 CQAYQERQRKHY 72 CQ E + KHY Sbjct: 59 CQTVYELKSKHY 70 >UniRef50_A4SL94 Phage protein n=2 Tax=root RepID=A4SL94_AERS4 Length = 69 Score = 73.8 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 37/68 (54%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D+ D A ++ T + R K + G+ ++ CE C +PIPEARR PGV LCV CQ Sbjct: 2 DDIDRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQ 61 Query: 63 AYQERQRK 70 E+ + Sbjct: 62 TRIEQLAR 69 >UniRef50_Q7N7S5 Similar to unknown protein n=1 Tax=Photorhabdus luminescens subsp. laumondii RepID=Q7N7S5_PHOLL Length = 83 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 1 MSDEAD--EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 MSD+ D A +VT I +R++++ + + CE CG+ I E RR+I PGV LC Sbjct: 1 MSDDIDDTRAQAVTAMWLEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQLC 60 Query: 59 VECQAYQERQRK 70 V CQ E + Sbjct: 61 VGCQEVAEHWEQ 72 >UniRef50_Q65AH5 TraR protein n=4 Tax=Enterobacteriaceae RepID=Q65AH5_YERPE Length = 88 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 34/72 (47%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+DE D E L I RQ+ G CE CGN IP R++ PGV C E Sbjct: 15 MADELDLLQEQDELLNQLHIQAARQRSCLEGKSRKRCECCGNRIPLRRQQAIPGVRTCTE 74 Query: 61 CQAYQERQRKHY 72 CQ E ++K Y Sbjct: 75 CQRVLEIRQKQY 86 >UniRef50_Q4QK09 DnaK suppressor protein, bacteriophage PSP3 gp34 homolog n=7 Tax=Haemophilus influenzae RepID=Q4QK09_HAEI8 Length = 71 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D A + E + + R + CE C PIPE RR++ GVT CV Sbjct: 1 MTDQFDRAQQLEEMQREIALKKHR---TFKAVSRLYCEDCDAPIPEKRRQMIQGVTRCVT 57 Query: 61 CQAYQERQRKHY 72 CQ E Q++++ Sbjct: 58 CQQRFEIQQRNF 69 >UniRef50_Q125W5 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q125W5_POLSJ Length = 79 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGI------PVYLC--EACGNPIPEARRKIF 52 M D+ D A + + + C + CG PIPE RRK Sbjct: 1 MPDDFDRAQQTEQMFRDDALRDQALRFQPGDPTRWQGLSALRCLYDGCGEPIPEQRRKAL 60 Query: 53 PGVTLCVECQAYQERQR 69 PGV CVECQ E++ Sbjct: 61 PGVKFCVECQQRLEKKG 77 >UniRef50_Q9S2X6 Putative DNA-binding protein n=2 Tax=Streptomyces RepID=Q9S2X6_STRCO Length = 239 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + A + T + ++ R +++A + CE CGNPI +AR + FP TLCVEC+ Sbjct: 176 EHELALAATAREVLSQTERALDRLDAGTYGL--CENCGNPIGKARMQAFPRATLCVECKQ 233 Query: 64 YQERQ 68 QER+ Sbjct: 234 KQERR 238 >UniRef50_B3QCL2 Transcriptional regulator, TraR/DksA family n=14 Tax=Proteobacteria RepID=B3QCL2_RHOPT Length = 73 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ DEA ++ E+ I R +I G C CG PI EARRK P T CV+ Sbjct: 1 MTDQLDEAQALEERERDDCIARAAGQIK--GHGATHCVVCGEPIDEARRKAMPSATRCVD 58 Query: 61 CQAYQERQRKHY 72 CQ +ER + + Sbjct: 59 CQESRERWSRSH 70 >UniRef50_A9QS46 Putative conjugal transfer protein TraR n=1 Tax=Pseudomonas syringae RepID=A9QS46_PSESX Length = 68 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D A + L + + R +I + CE C NPIPE RR G C+ Sbjct: 1 MADDIDRATEQAQYLLDVALFKHR-RIPTSLVSSQFCEDCDNPIPEPRRAAIVGCETCIH 59 Query: 61 CQAYQERQR 69 CQ+ +E++R Sbjct: 60 CQSLREQRR 68 >UniRef50_Q21SV6 Transcriptional regulators, TraR/DksA family n=58 Tax=Betaproteobacteria RepID=Q21SV6_RHOFD Length = 429 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 13/82 (15%) Query: 2 SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50 D AD A E I + +I++ C+ G I R Sbjct: 348 PDPADRATIEEEHALELRTRDRERKLLKKIEQSLARIDSGDYG--YCDETGEAIGVGRLL 405 Query: 51 IFPGVTLCVECQAYQERQRKHY 72 P L +E Q +E ++K + Sbjct: 406 ARPTANLSLEAQQRRELKQKMF 427 >UniRef50_Q89AR3 DnaK suppressor protein homolog n=7 Tax=Gammaproteobacteria RepID=DKSA_BUCBP Length = 151 Score = 70.7 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 13/81 (16%) Query: 2 SDEADEAYSVTE-----------QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 D D A E + + I + +K+ CE+CG I R + Sbjct: 70 PDPIDRAVQEEEFSFELRHRDRERKLIEKIEKTLKKVENKDFG--YCESCGIEIGIKRLE 127 Query: 51 IFPGVTLCVECQAYQERQRKH 71 P LC++C+ E + K Sbjct: 128 ARPTANLCIDCKTLSEIREKQ 148 >UniRef50_A8GA41 Transcriptional regulator, TraR/DksA family n=1 Tax=Serratia proteamaculans 568 RepID=A8GA41_SERP5 Length = 73 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D A + I R + C C IPE RR+ PGV+ CV Sbjct: 1 MADTIDMAQERQALMLEKQIAHARPVVTQA--SAQFCADCDGEIPEVRRRAIPGVSRCVA 58 Query: 61 CQAYQERQRKHY 72 CQ E Q++H+ Sbjct: 59 CQEVSEAQQRHF 70 >UniRef50_B8FC44 Transcriptional regulator, TraR/DksA family n=2 Tax=Proteobacteria RepID=B8FC44_DESAA Length = 69 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M D D A T I R + + + C+ CG+PIPEARRK PG T C++ Sbjct: 1 MPDPTDRAQEAAADYTRFSIEAARSRGSQST--LADCQDCGDPIPEARRKAVPGCTRCLD 58 Query: 61 CQAYQERQR 69 CQ E++R Sbjct: 59 CQETYEQRR 67 >UniRef50_Q4FUG7 Possible phage TraR/DksA family protein n=1 Tax=Psychrobacter arcticus 273-4 RepID=Q4FUG7_PSYA2 Length = 66 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+AD A + ++R + C CG IP R + GVTLCV+ Sbjct: 1 MADDADRANDYVDLTMAHCLSRA---PKFDKPSLTECMECGEDIPAKR-QAMGGVTLCVD 56 Query: 61 CQAYQERQRK 70 CQ+ E++ K Sbjct: 57 CQSVFEKRGK 66 >UniRef50_Q88IG2 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Pseudomonas putida KT2440 RepID=Q88IG2_PSEPK Length = 72 Score = 69.9 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D AD A + ++ + C CG IPE RR G C+E Sbjct: 1 MADIADLANDRAQWHLDLVLSARL--PAPECESLEDCVGCGGSIPEPRRLAVQGCQRCIE 58 Query: 61 CQAYQERQRKHYA 73 CQ + E++ YA Sbjct: 59 CQGFFEKKGARYA 71 >UniRef50_B8CWL7 Transcriptional regulator, TraR/DksA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWL7_HALOH Length = 228 Score = 69.6 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E D Q+ + + ++ + CE CG I E R + P TLC CQA Sbjct: 60 EKDRGLRDNAQVLLNKVENALNRLEEGNYGL--CEKCGQEIREERLETIPYATLCERCQA 117 Query: 64 YQERQRKHY 72 +E + + Sbjct: 118 KEEGKDYNR 126 >UniRef50_A7N392 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7N392_VIBHB Length = 72 Score = 69.6 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINR--IRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 M D D A + QLT + R K A C CG+PIPEARR+ G C Sbjct: 1 MPDVIDHACDIEAQLTEVALANQLARAKPKASRESAQECGECGDPIPEARRQHMTGCQYC 60 Query: 59 VECQAYQERQRK 70 CQ+ E+ ++ Sbjct: 61 THCQSDLEKMKR 72 >UniRef50_B5GH83 DNA-binding protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GH83_9ACTO Length = 232 Score = 69.6 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + A + + + R +++A V CE CG PI +AR + FP LCV+C+ Sbjct: 170 EHELALAAGSRERLEQTERALLRMDAGTYGV--CENCGKPIGKARMQAFPHAILCVDCKQ 227 Query: 64 YQERQ 68 ER+ Sbjct: 228 KSERR 232 >UniRef50_C9R7U4 Transcriptional regulator, TraR/DksA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7U4_AMMDK Length = 176 Score = 69.6 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A L + I +++ CE+CG PIP R + P TLC C+ Q Sbjct: 39 DLALREDALLKLQVIEDALRRLEEGTYG--YCESCGAPIPRERLEAVPYTTLCHACKERQ 96 Query: 66 ERQR 69 E + Sbjct: 97 EAKG 100 >UniRef50_Q67Q17 Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67Q17_SYMTH Length = 269 Score = 69.2 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D + I Q+++ +CE CG PI R K FP T C+ CQ + Sbjct: 60 DLGLRSHMLRRIQEIESALQRMDQGTYG--ICEECGRPIDPERLKAFPSATTCITCQQRR 117 Query: 66 ERQRKHY 72 E + + Sbjct: 118 EARPDRF 124 >UniRef50_C7QCE7 Transcriptional regulator, TraR/DksA family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QCE7_CATAD Length = 275 Score = 68.8 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + A + + + R ++ A V CE+CG P+ + R + FP TLC+ C+ Sbjct: 213 EHEMAIANNAREMLQQTERALARLAADTYGV--CESCGEPVGKYRLQAFPRATLCMSCKQ 270 Query: 64 YQERQ 68 QER+ Sbjct: 271 KQERR 275 >UniRef50_A5UPY9 Transcriptional regulator, TraR/DksA family n=2 Tax=Roseiflexus RepID=A5UPY9_ROSS1 Length = 121 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E D A + + +N ++++ +C CG PIP R + P TLCV CQ+ Sbjct: 56 ERDLALRSNARELLEQVNAALRRLDEGTYG--ICADCGEPIPIERLEALPYATLCVRCQS 113 Query: 64 YQERQRK 70 +ER R+ Sbjct: 114 TRERARR 120 >UniRef50_A3YA40 C4-type zinc finger protein, DksA/TraR family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YA40_9GAMM Length = 73 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 4/69 (5%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGI----PVYLCEACGNPIPEARRKIFPGVTLC 58 DE D A + I ++ + C CG IP R K P V C Sbjct: 2 DEFDHAQQQEQAFRDKAIAHQLKQPSETPYEDEDGYRYCLDCGQDIPLKRIKALPHVVRC 61 Query: 59 VECQAYQER 67 V CQ +ER Sbjct: 62 VSCQDKKER 70 >UniRef50_A7K6F3 DnaK suppressor protein (Fragment) n=48 Tax=Vibrionales RepID=A7K6F3_VIBSE Length = 208 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 9/79 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGI---------PVYLCEACGNPIPEARRKIF 52 D D A E +++ CE+CG I R + Sbjct: 67 PDPVDRASQEEEFSLELRNRDRERRLIKKIEKTLDKIKEDDFGFCESCGVEIGVRRLEAR 126 Query: 53 PGVTLCVECQAYQERQRKH 71 P LC++C+ E + K Sbjct: 127 PTADLCIDCKTLAEIKEKQ 145 >UniRef50_B6ICF8 TraR protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF8_ECOSE Length = 74 Score = 68.0 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+DE + S L I RIRQ++ GI C+ CG P+P RR++ PGV CV Sbjct: 1 MADEIERFQSHQAMLEADRIQRIRQQLT--GISALFCDDCGAPVPAERRRLIPGVRKCVG 58 Query: 61 CQAYQERQRKHY 72 CQ QE Q +HY Sbjct: 59 CQEVQEIQARHY 70 >UniRef50_A6UZ55 Conserved domain protein n=2 Tax=Pseudomonas RepID=A6UZ55_PSEA7 Length = 69 Score = 68.0 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D A + Q + + ++ G + C+ CG IPEARR G+ C Sbjct: 1 MADCFDRAQARELQDRELALQAHQVRVRPSGPSLTHCQECGEQIPEARR-ALGGIIRCTP 59 Query: 61 CQAYQERQRK 70 CQA E+ + Sbjct: 60 CQARFEKGGR 69 >UniRef50_B9Z318 Transcriptional regulator, TraR/DksA family n=2 Tax=Chromobacterium group RepID=B9Z318_9NEIS Length = 68 Score = 68.0 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D D A + + I R + G+ CE CG PIP AR+ PG T CV+CQ Sbjct: 2 DPFDRAQELEMEQREAAIAAARD-LVGRGVSATECEDCGTPIPPARQLAAPGCTRCVDCQ 60 Query: 63 AYQERQRK 70 +ER R+ Sbjct: 61 NRRERPRR 68 >UniRef50_Q5UF45 Predicted DskA family protein n=4 Tax=Bacteria RepID=Q5UF45_9PROT Length = 202 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 9/79 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINA---------HGIPVYLCEACGNPIPEARRKIF 52 D D A E + +K+ A CE+CG I R + Sbjct: 121 PDSLDRAAKEEEFMLELRKRERERKLIAKIDLSLKDLEDNLYGYCESCGVEIGIKRLEAR 180 Query: 53 PGVTLCVECQAYQERQRKH 71 P T C++C+ E + K Sbjct: 181 PTATKCIDCKTVDEIKEKQ 199 >UniRef50_A1VE28 Transcriptional regulator, TraR/DksA family n=12 Tax=Desulfovibrio RepID=A1VE28_DESVV Length = 78 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAH-----GIPVYLCEACGNPIPEARRKIFPGV 55 M+D D+A + I+ R ++ + C CG IPEAR K PG Sbjct: 6 MADIFDQASDYEARDREAAISAARNRLASGPGPEWIDGKPCCRECGEVIPEARVKALPGC 65 Query: 56 TLCVECQAYQE 66 LC EC E Sbjct: 66 GLCRECAEEME 76 >UniRef50_Q12EM6 Transcriptional regulators, TraR/DksA family n=65 Tax=Betaproteobacteria RepID=Q12EM6_POLSJ Length = 450 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 13/82 (15%) Query: 2 SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50 D AD A E I + +I++ C+ G PI R Sbjct: 369 PDPADRATIEEEHALELRTRDRERKLLKKIEQSIARIDSGDYG--YCDETGEPIGVGRLI 426 Query: 51 IFPGVTLCVECQAYQERQRKHY 72 P L +E Q +E ++K + Sbjct: 427 ARPTANLSLEAQQRRELKQKMF 448 >UniRef50_A0LTP3 Transcriptional regulators, TraR/DksA family n=7 Tax=Actinomycetales RepID=A0LTP3_ACIC1 Length = 527 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 E A + + +I CE CGNPI + R + P TLCV C+ Sbjct: 466 HEMSLAN--NARDLLVQTEHALARIADGTYGR--CENCGNPINKLRLQANPRATLCVSCK 521 Query: 63 AYQERQ 68 +ER+ Sbjct: 522 QREERR 527 >UniRef50_C5B4E4 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4E4_METEA Length = 73 Score = 66.9 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D + E + IR + + C+ CG IP RR+ P CV Sbjct: 1 MADDVDMIQHLDEMAMDGKLAAIRSRTETTDLAPEDCDDCGGDIPMERRRAAPWTRRCVR 60 Query: 61 CQAYQER 67 CQ ER Sbjct: 61 CQTLAER 67 >UniRef50_Q2RK56 Transcriptional regulators, TraR/DksA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK56_MOOTA Length = 251 Score = 66.5 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A Q+ + I Q I C CG IP R + P TLC+EC+ Sbjct: 63 DLALRDNVQVQLRKIEDALQSIAEGTYG--YCRRCGREIPRERLEAIPETTLCLECRRKM 120 Query: 66 ERQRKHYA 73 E + ++ Sbjct: 121 EGKADKHS 128 >UniRef50_B3DUR8 DnaK suppressor protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DUR8_METI4 Length = 249 Score = 66.5 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 + D A S+ Q + I +C+ CG PIP R + P V+CQ Sbjct: 147 DRDFALSLLSQENDSLIEIDDSLKRIEDNTYGICQMCGKPIPIIRLQAIPYARFTVDCQR 206 Query: 64 YQERQRKHY 72 E + K Y Sbjct: 207 QLE-KEKMY 214 >UniRef50_A5D3H2 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D3H2_PELTS Length = 242 Score = 66.5 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A L + I+R KI C+ CG IP R + P C +C+ + Sbjct: 68 DFALRENAMLAVAAIDRALAKIENGTYGK--CDNCGREIPLERLEAVPSTVCCKKCKEAE 125 Query: 66 ERQRK 70 E+ + Sbjct: 126 EKNTR 130 >UniRef50_A1HSA8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSA8_9FIRM Length = 227 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A L + + +K+ A +C+ CG I R + P C+ C+ Sbjct: 63 DLALRDNAHLLLEQVEHALEKVAAGNYG--ICDNCGREIGIERLQAIPYAARCIVCEKKY 120 >UniRef50_C4GGH6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GGH6_9NEIS Length = 75 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MS + D+A + E+ ++ ++ C+ CG+ IPEARR+ G C+E Sbjct: 1 MSRQIDQACELEERYRQAALDYQAKQNYPQRPSASHCQDCGDIIPEARRRAALGCQYCIE 60 Query: 61 CQAYQERQRKHYA 73 CQ E + YA Sbjct: 61 CQERIEHAKAQYA 73 >UniRef50_P41039 Uncharacterized protein ybiI n=135 Tax=Proteobacteria RepID=YBII_ECOLI Length = 88 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D I R R +I G + CE CG PIP+ARR+ PGV LC+ CQ + Sbjct: 9 DAVNEQINSTIEDAIARARGEI-PRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEK 67 Query: 66 ERQRKHYA 73 + Q+ Y Sbjct: 68 DLQKPAYT 75 >UniRef50_A4XQ42 Transcriptional regulator, TraR/DksA family n=11 Tax=Proteobacteria RepID=A4XQ42_PSEMY Length = 88 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D + I R R ++ G + CE C IPEARR+ PGV LCV+CQA Sbjct: 9 DAVQEQIDSSIEDAIARARSQL-PKGESLRHCEECDAVIPEARRQAIPGVRLCVKCQAEH 67 Query: 66 ERQRKHYA 73 +R+ Y+ Sbjct: 68 DRENAAYS 75 >UniRef50_A1SL71 Zinc finger, DksA/TraR C4-type n=4 Tax=Actinomycetales RepID=A1SL71_NOCSJ Length = 283 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Query: 12 TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 +E+ + I R +I+ V CE+CGNPI + R FP TLC+ C+ +ER+ Sbjct: 229 SERDKLAQIERALARIDDGTYGV--CESCGNPIGKMRLMAFPRATLCMTCKQREERR 283 >UniRef50_D2R2J7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R2J7_9PLAN Length = 148 Score = 66.1 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 DE + + E + I+ +++ + CE C PIP R + P +C++CQ Sbjct: 53 DEINSQLAEVESRELAHIDTALERMRSGNYGA--CEGCNEPIPLLRLQALPYAVMCIKCQ 110 Query: 63 AYQER 67 E+ Sbjct: 111 REAEK 115 >UniRef50_B0TGP7 Putative uncharacterized protein n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TGP7_HELMI Length = 238 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A + I + +++I+ +CE C IP+AR P TLC+ECQ+++ Sbjct: 62 DLATRDRFSRELDEIAKAKRRISEGIYG--ICERCHQKIPDARMAAMPTATLCIECQSHE 119 Query: 66 E 66 E Sbjct: 120 E 120 >UniRef50_C8W4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W4E4_DESAS Length = 231 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A L + + + I +C+ CG I AR P TLC EC+ Q Sbjct: 63 DFALRDDAMLKIRAVEDALKNIEMGKYG--ICDICGKEIGYARLTALPRTTLCKECKEAQ 120 Query: 66 ER 67 ER Sbjct: 121 ER 122 >UniRef50_UPI0001826470 hypothetical protein EcanA3_08019 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826470 Length = 71 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D D A + E ++ +IN + + CE CG IPE RR PG C ECQ Sbjct: 2 DIIDTAAEIEELQRNAALSAH--RINRNAVSAERCEECGEDIPEPRRAAVPGCQTCSECQ 59 Query: 63 AYQERQRKHY 72 + E + K Sbjct: 60 SVIELKNKQR 69 >UniRef50_A4SHJ5 DnaK suppressor protein n=3 Tax=Gammaproteobacteria RepID=A4SHJ5_AERS4 Length = 128 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 13/82 (15%) Query: 1 MSDEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARR 49 M+DE D A + + ++IN CE+CG+ I R Sbjct: 43 MADEIDRASIEEARRLELNRIEHDKLHLRKLQGALRRINEGDFG--YCESCGDEISLKRL 100 Query: 50 KIFPGVTLCVECQAYQERQRKH 71 + P CVECQ+ +E H Sbjct: 101 QARPESRFCVECQSTKEFNDTH 122 >UniRef50_Q30V43 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30V43_DESDG Length = 149 Score = 65.3 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 9/80 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYL---------CEACGNPIPEARRKIF 52 DE ++A + E + + A CE CG+ I EAR K Sbjct: 61 PDENEQASRLAELTLDVALRGRLARQLAAVESALHRIATGGFGRCEECGDEIGEARLKAN 120 Query: 53 PGVTLCVECQAYQERQRKHY 72 P TLC+ CQ +E + Sbjct: 121 PTTTLCIHCQEDREAEAARR 140 >UniRef50_P43758 DnaK suppressor protein homolog n=104 Tax=Proteobacteria RepID=DKSA_HAEIN Length = 145 Score = 65.3 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 9/81 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKI---------NAHGIPVYLCEACGNPIPEARRKIF 52 D AD A E +K+ C+ CG I R + Sbjct: 64 PDPADRATQEEEFSLELRNRDRERKLMKKIEATLKKLDTDDFGYCDCCGEEIGIRRLEAR 123 Query: 53 PGVTLCVECQAYQERQRKHYA 73 P LC++C+ E + K A Sbjct: 124 PTADLCIDCKTLAEIREKQVA 144 >UniRef50_D1X2L9 Transcriptional regulator, TraR/DksA family n=5 Tax=Streptomyces RepID=D1X2L9_9ACTO Length = 248 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + + + Q + R ++ A + CE CG PI +AR + FP TLCVE + Sbjct: 185 EHELSLAANAQEMLEQTERALARLEAGTYGL--CEICGKPIGKARMQAFPRATLCVEDKQ 242 Query: 64 YQERQR 69 QER+ Sbjct: 243 KQERRG 248 >UniRef50_A3RXC3 DnaK suppressor protein n=1 Tax=Ralstonia solanacearum UW551 RepID=A3RXC3_RALSO Length = 224 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 13/82 (15%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQ-----------KINAHGIPVYLCEACGNPIPEARRK 50 D AD A E + +I+ C+ G PI R Sbjct: 143 PDPADRATIEEEHALELRTRDRERKLLKKVEQSIQRIDEGNYG--YCDETGEPIGVPRLL 200 Query: 51 IFPGVTLCVECQAYQERQRKHY 72 P TL +E Q +E+++K + Sbjct: 201 ARPTATLTLEAQERREKRQKLF 222 >UniRef50_D1YA14 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Propionibacterium acnes RepID=D1YA14_PROAC Length = 159 Score = 64.9 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 13/77 (16%) Query: 3 DEADEAYSVTEQLTMTGINR-----------IRQKINAHGIPVYLCEACGNPIPEARRKI 51 D D S E+ + R Q ++ CE+CG PI +AR + Sbjct: 85 DTIDVGSSQFERDQEISVTRNARAVYDQSKLALQLLDRGTWGT--CESCGEPIGKARLQA 142 Query: 52 FPGVTLCVECQAYQERQ 68 FP T+CV+C+ QER+ Sbjct: 143 FPRATMCVKCKQRQERR 159 >UniRef50_A7H9X1 Transcriptional regulator, TraR/DksA family n=7 Tax=Cystobacterineae RepID=A7H9X1_ANADF Length = 120 Score = 64.9 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 13/83 (15%) Query: 1 MSDEADEAYSV-----------TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARR 49 + DE D A S E+ + I++ +I +CE C I R Sbjct: 39 LPDEIDLASSEYTQSMIFRLRDREKFLLAKIDKALARIENGTFG--ICERCEEEISVKRL 96 Query: 50 KIFPGVTLCVECQAYQERQRKHY 72 + P TLC+ C+ QE++ K + Sbjct: 97 EARPVTTLCIRCKEEQEQKEKSF 119 >UniRef50_B8FT18 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfitobacterium hafniense RepID=B8FT18_DESHD Length = 222 Score = 64.9 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 9/78 (11%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPV---------YLCEACGNPIPEARRKIFP 53 AD A V E+ I+ LCE C IP R + P Sbjct: 45 HPADIATEVYERSRDVAIHDRLHHRIQAIDSALQRYEEGKYGLCEHCQKEIPLGRLEALP 104 Query: 54 GVTLCVECQAYQERQRKH 71 T+C EC +E + +H Sbjct: 105 FTTVCTECSRLEEMEEQH 122 >UniRef50_C6I0P9 Transcriptional regulator, TraR/DksA family n=3 Tax=Leptospirillum RepID=C6I0P9_9BACT Length = 136 Score = 64.5 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M + D A +++ ++ CE CG I E R P LC++ Sbjct: 56 MGEGVDLALLEMRNRMKRSVDQALLRLEEGSYG--NCEDCGGEIEEKRLMAMPFAQLCIK 113 Query: 61 CQAYQERQRK 70 CQ +E K Sbjct: 114 CQRKKEELEK 123 >UniRef50_A1AL35 Transcriptional regulator, TraR/DksA family n=8 Tax=Deltaproteobacteria RepID=A1AL35_PELPD Length = 118 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 9/79 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPV---------YLCEACGNPIPEARRKIF 52 D D A +++ I +K+ +CE CG+ I EAR K+ Sbjct: 39 PDPTDRATQESDRNFELRIRDRERKLINKIKEALSRIDSGEFGICEECGDEIGEARLKVR 98 Query: 53 PGVTLCVECQAYQERQRKH 71 P TLC+ C+ E++ K Sbjct: 99 PVTTLCINCKLEAEKKEKR 117 >UniRef50_A9N2T0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 RepID=A9N2T0_SALPB Length = 84 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 1 MSDEA--DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 MS++ + A + T T GIN IR K+++ +CE CG IP AR+ PGV LC Sbjct: 1 MSEDLNDEMAQASTAIFTQRGINAIRAKVHSLRPSKEICECCGADIPAARQLAVPGVELC 60 Query: 59 VECQAYQERQRKHYA 73 CQ +E+Q H A Sbjct: 61 AACQDVKEKQDVHRA 75 >UniRef50_B5EUP2 Zinc finger protein n=32 Tax=Proteobacteria RepID=B5EUP2_VIBFM Length = 89 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 34/65 (52%) Query: 9 YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 + + INR R ++ C CG IPEARR I PGV LCVECQA ++ + Sbjct: 12 QEQIDATVIDAINRARSHLHHEHNDTNYCLECGELIPEARRNIIPGVELCVECQAKEDAR 71 Query: 69 RKHYA 73 K ++ Sbjct: 72 EKAFS 76 >UniRef50_Q9MC51 Orf77 n=1 Tax=Pseudomonas phage D3 RepID=Q9MC51_BPD3 Length = 67 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D D A E+ R+ ++ G +Y CE CG IP ARR++ PGV C+ CQ Sbjct: 2 DIVDIANDYAERELA---ERLYSRVKYVGESLYECEDCGEEIPVARRELVPGVRKCLSCQ 58 Query: 63 AYQE 66 Y E Sbjct: 59 EYLE 62 >UniRef50_A3DD29 Transcriptional regulators, TraR/DksA family n=5 Tax=Clostridium RepID=A3DD29_CLOTH Length = 212 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + A V E+ + IN K++ CE CG I E R + P LC++C+ Sbjct: 61 ELNNALKVHEERLLEDINEALTKMDKGSFGK--CELCGKEIDEERLEALPYTRLCIDCEN 118 Query: 64 YQE 66 +E Sbjct: 119 AKE 121 >UniRef50_A4XKS6 Transcriptional regulator, TraR/DksA family n=2 Tax=Clostridia RepID=A4XKS6_CALS8 Length = 209 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 13/78 (16%) Query: 3 DEADEAYSVTE-----------QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51 AD A + E + + I + KI C +C IP R Sbjct: 49 HPADIASDLFEVEKNMGLKADMKRKLELIEKALSKIEKGNFG--YCISCKKEIPFDRLLA 106 Query: 52 FPGVTLCVECQAYQERQR 69 P C+ECQ E++ Sbjct: 107 IPYTEFCIECQKDMEKRE 124 >UniRef50_Q8H9Q7 ORF8 n=1 Tax=Vibrio phage VHML RepID=Q8H9Q7_9CAUD Length = 75 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 +D D A ++++ ++RI+ G+ + C CG+ IP+ RR++ GVT CV+C Sbjct: 6 ADPLDRAAALSQAHLEVSLSRIK---KFEGVSAHECVECGSEIPKKRRELLQGVTDCVDC 62 Query: 62 QAYQERQRKHY 72 A +E K+Y Sbjct: 63 AAIKETLSKNY 73 >UniRef50_A1VXK8 DnaK suppressor protein, putative n=15 Tax=Campylobacter RepID=A1VXK8_CAMJJ Length = 120 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 + D A S + + I KI +CE+C + I R K+ P C+ C+ Sbjct: 53 QIDFAISTNLKEELIEIEDSLDKIKNGTYG--ICESCDDEIDSQRLKVKPHARYCITCRQ 110 Query: 64 YQERQRKH 71 E+ +KH Sbjct: 111 IAEQGKKH 118 >UniRef50_A4JDG9 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria RepID=A4JDG9_BURVG Length = 77 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLC--EACGNPIPEARRKIFPGVTLCVE 60 D+ D A + EQ I + +++ C EACG PIPE RR+ G CVE Sbjct: 2 DDFDHASDIEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVE 61 Query: 61 CQAYQER 67 CQ +E+ Sbjct: 62 CQERREQ 68 >UniRef50_Q3ABZ5 Putative transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ABZ5_CARHZ Length = 213 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A +L + I+ IN + C CG IP R P CV CQ Sbjct: 59 DFALIDNLKLKLRQIDEAIALINQGKYGL--CIDCGQKIPVDRLFANPVAIRCVACQKRV 116 Query: 66 ERQ 68 E + Sbjct: 117 EER 119 >UniRef50_A4XDN2 Zinc finger, DksA/TraR C4-type n=5 Tax=Actinomycetales RepID=A4XDN2_SALTO Length = 139 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E A S+ E++T + R ++++ G CE CGNPIP R FP TLCV C+ Sbjct: 79 EISLANSILERITQ--VERALERLDEGGYG--WCERCGNPIPVERLAAFPSATLCVTCKQ 134 Query: 64 YQERQ 68 ER+ Sbjct: 135 LAERR 139 >UniRef50_D0KGB6 Transcriptional regulator, TraR/DksA family n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KGB6_PECWW Length = 79 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 1 MSDEAD--EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 MS + D A + TEQL + ++ I + ++ I C+ACGN IPEARR PGV LC Sbjct: 1 MSHDLDDEMAMATTEQLLQSSLSLILRNVHNGRISNTCCDACGNEIPEARRLAVPGVELC 60 Query: 59 VECQAYQERQRK 70 V CQ +E K Sbjct: 61 VGCQEVEEHLTK 72 >UniRef50_P0ABS3 DnaK suppressor protein n=247 Tax=Proteobacteria RepID=DKSA_ECO57 Length = 151 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 9/81 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKI---------NAHGIPVYLCEACGNPIPEARRKIF 52 D D A E +K+ CE+CG I R + Sbjct: 70 PDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEAR 129 Query: 53 PGVTLCVECQAYQERQRKHYA 73 P LC++C+ E + K A Sbjct: 130 PTADLCIDCKTLAEIREKQMA 150 >UniRef50_Q021M5 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q021M5_SOLUE Length = 143 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 13/79 (16%) Query: 2 SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D D TE+ + Q+I V C C N IP R K Sbjct: 54 ADSLDRIQHATEREMAIRRIELDFSKVQSVRSALQRIAEGTYGV--CSECDNEIPGKRLK 111 Query: 51 IFPGVTLCVECQAYQERQR 69 P C++CQ +R+R Sbjct: 112 AVPWTPYCLDCQDSADRRR 130 >UniRef50_B2S244 Possible dnaK suppressor n=3 Tax=Treponema RepID=B2S244_TREPS Length = 120 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%) Query: 2 SDEADEAYSVT----EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57 SD+ D + + + I +I C CG IPE R + P + Sbjct: 48 SDDMDRKMLESLSAKDLRCLQQIESALLRIEQGRYGK--CADCGESIPEDRLRAIPYSLM 105 Query: 58 CVECQAYQERQRKHY 72 C+ECQ+ +E +R+ + Sbjct: 106 CIECQSARESKRRAF 120 >UniRef50_A8PLZ9 Suppressor protein DksA n=3 Tax=Gammaproteobacteria RepID=A8PLZ9_9COXI Length = 295 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 13/82 (15%) Query: 1 MSDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARR 49 + D +D A E I +++ C +CG I R Sbjct: 213 LPDMSDRATQEEEFNLELRARDRERKLIKKIEDALHQLDEGHYG--FCSSCGVEIGIRRL 270 Query: 50 KIFPGVTLCVECQAYQERQRKH 71 + P LC++C+ E + K Sbjct: 271 EARPTANLCIDCKTLDEIREKQ 292 >UniRef50_A4J571 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J571_DESRM Length = 234 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A T+ I+ K+ +CE C I + R + P T C++C++ Sbjct: 64 DFALREDAITTLGAIDDALDKMEEGMYG--ICEVCHQEISQDRLEAIPYTTQCIDCKSRD 121 Query: 66 ERQRKHY 72 E K + Sbjct: 122 EHLPKSH 128 >UniRef50_D2L3E3 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio RepID=D2L3E3_9DELT Length = 131 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 13/82 (15%) Query: 2 SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D AD A + +++ IN ++ +C+ CG I AR + Sbjct: 39 ADVADRATAESDRHLTILMRERDRQLIGEINEALARVKDGDYG--ICQECGEEIGLARLR 96 Query: 51 IFPGVTLCVECQAYQERQRKHY 72 P TLCV C++ E + Y Sbjct: 97 AQPTATLCVHCKSMLEEMGRPY 118 >UniRef50_UPI00016C4B65 DnaK suppressor protein DksA n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4B65 Length = 95 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 9 YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 + E + I R +++ A CE C IP AR P T CV+CQ ER Sbjct: 1 MAELEAKELAQIERALRRLKAGTYGK--CEVCSIKIPVARLNALPFSTFCVDCQREMER 57 >UniRef50_B1I4J4 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4J4_DESAP Length = 212 Score = 62.6 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A + + + +++ C+ CG I R + P T C EC+A Sbjct: 67 DFALRENARFRLLAVEDALARMDRGTYGR--CDECGVDIDLERLEAVPFTTKCRECKARA 124 Query: 66 ERQR 69 E + Sbjct: 125 EGKD 128 >UniRef50_A6WCW5 Transcriptional regulator, TraR/DksA family n=10 Tax=Actinomycetales RepID=A6WCW5_KINRD Length = 159 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Query: 12 TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 + + R ++ + V CE+C P+ +AR + FP VTLCV C++ ER+ Sbjct: 105 NARELLEQTQRALVRLGSGVYGV--CESCDGPVGKARLQAFPRVTLCVRCKSRGERR 159 >UniRef50_C0GJQ4 Transcriptional regulator, TraR/DksA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJQ4_9FIRM Length = 203 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D + Q+ + + +K++ + CE CG PIPE R P CV+C+ Sbjct: 62 DISLHEKNQMVLDKVEEALEKLDNDIYGM--CENCGKPIPEERLDALPYAEFCVQCKKKS 119 Query: 66 E 66 E Sbjct: 120 E 120 >UniRef50_D1AEE3 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AEE3_THECD Length = 114 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 D+ + + T+ I ++ + CE CG PIPE R +I P CV C Sbjct: 49 PDDTALVQADALRQTLEDIEEALLRLRQGRYGL--CEKCGKPIPEGRLEILPYARCCVSC 106 Query: 62 QAYQERQR 69 Q + + Sbjct: 107 QQRRRGRA 114 >UniRef50_A1B365 Transcriptional regulator, TraR/DksA family n=35 Tax=Proteobacteria RepID=A1B365_PARDP Length = 91 Score = 62.2 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHG--IPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 D E T I R+R + G CE C PIPEARR+ PGV LCV+CQ+ Sbjct: 9 DAVNEQIEVSTQEAIERMRLRNAQRGDRESAAFCEECDEPIPEARRRAIPGVRLCVDCQS 68 Query: 64 YQER 67 ++R Sbjct: 69 GRDR 72 >UniRef50_Q2LSS1 DnaK suppressor protein n=13 Tax=Deltaproteobacteria RepID=Q2LSS1_SYNAS Length = 150 Score = 62.2 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPV---------YLCEACGNPIPEARRKIF 52 D D A +++ + +K+ A LCE CG PI E R Sbjct: 69 PDPTDRASLESDRNFELRMRDRERKLIAKMQEAIKRIDEGEFGLCEVCGGPISEKRLMAR 128 Query: 53 PGVTLCVECQAYQERQRK 70 P TLC++C+ QE+ K Sbjct: 129 PVTTLCIDCKTKQEKLEK 146 >UniRef50_B0TKU6 Transcriptional regulator, TraR/DksA family n=1 Tax=Shewanella halifaxensis HAW-EB4 RepID=B0TKU6_SHEHH Length = 68 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 31/67 (46%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 DE DE+ V + + K+ C CG IPE RR+ GV LC++CQ Sbjct: 2 DEGDESVRVQARALNQYLAGRATKLLVAKASASYCARCGEDIPEPRRQAVKGVQLCIDCQ 61 Query: 63 AYQERQR 69 ER++ Sbjct: 62 TLSERKQ 68 >UniRef50_B4D0A5 Transcriptional regulator, TraR/DksA family n=2 Tax=Verrucomicrobia RepID=B4D0A5_9BACT Length = 233 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 4/69 (5%) Query: 4 EADEAYSVTEQLTMT--GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 + D A S+ Q I ++I V CE G PI R + P VEC Sbjct: 134 DRDFALSLLSQEQDALYEIEEALKRIELGTYGV--CEMSGKPIAHPRLEALPFARYTVEC 191 Query: 62 QAYQERQRK 70 Q+ E+Q K Sbjct: 192 QSQIEKQGK 200 >UniRef50_D1U4E4 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4E4_9DELT Length = 66 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M D D + E ++ + A C CG PIPE RR PGVTLCV Sbjct: 1 MPDFCDMGHEAEELARKAALSMAGTR-RADAPSRETCAECGAPIPEPRRVAVPGVTLCVA 59 Query: 61 CQAYQE 66 CQA +E Sbjct: 60 CQAAKE 65 >UniRef50_A3ZQT2 Probable DnaK suppressor protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQT2_9PLAN Length = 134 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 DE + E + I++ ++I CE C IP AR + P TLC++CQ Sbjct: 54 DELSSQLAEVESRELAQIDKALERIRGG--SFGECEGCTCKIPTARLQALPYATLCIKCQ 111 Query: 63 AYQE 66 E Sbjct: 112 RELE 115 >UniRef50_B7V4J8 Repressor, PtrB n=8 Tax=Pseudomonas RepID=B7V4J8_PSEA8 Length = 66 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D AD A + + + A CE CG PIP+ARR+ PG + C++ Sbjct: 1 MADLADHANELVLARLDGLLAA--RPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCID 58 Query: 61 CQAYQERQ 68 CQ ER+ Sbjct: 59 CQDRHERR 66 >UniRef50_Q253H0 DnaK suppressor n=16 Tax=Chlamydiales RepID=Q253H0_CHLFF Length = 124 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 2 SDEADEAYSVT----EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57 +D D S+ E + INR +KI +C+ G IP AR P T+ Sbjct: 51 TDTFDRTISLEVTTKEYELLRQINRALEKIEESSYG--ICDVSGEEIPLARLMAIPYATM 108 Query: 58 CVECQAYQER 67 V+ Q+ E+ Sbjct: 109 TVKAQSQFEK 118 >UniRef50_A7ZJE9 Phage/conjugal plasmid C-4 type zinc finger protein, TraR family n=45 Tax=root RepID=A7ZJE9_ECO24 Length = 73 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D A + E T I +++N I C CG+PI E RR + G C Sbjct: 1 MADIIDSASEIEELQRNTAIK--MRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCAS 58 Query: 61 CQAYQERQRKHY 72 CQ E K Sbjct: 59 CQEDLELISKQR 70 >UniRef50_B5YGE3 DnaK suppressor protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGE3_THEYD Length = 129 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 +S++ T + + I +K+ +CE CG+ IPE R KI P C + Sbjct: 56 LSEDISLKQLSTHRDILKKIEEALRKLEEGTYG--ICEMCGDEIPEERLKILPFAIYCRD 113 Query: 61 CQAYQERQRK 70 CQ E K Sbjct: 114 CQEKIEMIEK 123 >UniRef50_C0GTL3 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GTL3_9DELT Length = 243 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 8 AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 A + + I+ ++ +C++CG I EAR + P C C E Sbjct: 57 ALDSQARSELNHIDHALDRMIIGNYG--ICDSCGQEISEARLQAVPWARYCRVCVNKAEE 114 Query: 68 Q 68 + Sbjct: 115 K 115 >UniRef50_Q97H97 General stress protein, DnaK suppressor DskA, YTEA B.subtilis ortholog n=1 Tax=Clostridium acetobutylicum RepID=Q97H97_CLOAB Length = 200 Score = 61.5 bits (148), Expect = 7e-09, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 7 EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 A+ E+ + I K+ G +CE CG PI E R + P CVECQ Sbjct: 64 MAFRKNEEALLNKIGNAIDKVEHGGYG--ICEVCGKPISEERLEFVPYAENCVECQNKL 120 >UniRef50_Q48285 Haemophilus somnus cryptic prophage genes, capsid scaffolding protein n=1 Tax=Histophilus somni RepID=Q48285_HAESO Length = 76 Score = 61.5 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D A TE + I + +QK V C C IPE R+K G C++ Sbjct: 1 MTDQVDRANEYTEIMQQLAIQKHQQK-TREKSTVKYCLDCQEEIPEIRQKN--GYCRCID 57 Query: 61 CQAYQERQRKHY 72 CQ E+ ++ Y Sbjct: 58 CQRIIEKHQRIY 69 >UniRef50_Q2LQQ9 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LQQ9_SYNAS Length = 86 Score = 61.5 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 15/84 (17%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKIN---------------AHGIPVYLCEACGNPIPEA 47 DE D A + ++ + A +C CG I A Sbjct: 2 DEIDHAQQHEAMHREIALREHFRRRDNYSERGRNPGLHPKGAGPGERRICRDCGEEIQPA 61 Query: 48 RRKIFPGVTLCVECQAYQERQRKH 71 R P C+ECQ +ER+ +H Sbjct: 62 RLAAMPFAVRCIECQGIKERRERH 85 >UniRef50_C4LBC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBC7_TOLAT Length = 76 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 28/73 (38%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 MSD D A + +Q + R + + + C C PIP R CVE Sbjct: 1 MSDVVDRANDLVQQRLDDEMARRHRDVEKPLVIHRFCFDCEQPIPAERLASIQSAKRCVE 60 Query: 61 CQAYQERQRKHYA 73 CQA E Q A Sbjct: 61 CQALFEEQEAIRA 73 >UniRef50_Q1MS84 Molecular chaperone dnaK n=4 Tax=Deltaproteobacteria RepID=Q1MS84_LAWIP Length = 133 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 13/79 (16%) Query: 2 SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D AD A + + E+ + I Q+I+ V CE CG+ I R K Sbjct: 52 ADPADRASAESDRAFTLRIRDRERRLIRKIQSALQRIDDGTYGV--CEDCGDDIGTPRLK 109 Query: 51 IFPGVTLCVECQAYQERQR 69 P LC+ C++ QE Sbjct: 110 ARPVTKLCINCKSRQEEGE 128 >UniRef50_Q9ZXI6 Orf39 n=3 Tax=root RepID=Q9ZXI6_9CAUD Length = 68 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D D+A E + + ++ CE CG IPEARR+ PG C+ CQ Sbjct: 2 DVIDQANERAENMVQAAL--AQRTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQ 59 Query: 63 AYQERQRKH 71 +E + Sbjct: 60 ELREHPARR 68 >UniRef50_A5EW31 RNA polymerase-binding protein DksA n=2 Tax=Gammaproteobacteria RepID=A5EW31_DICNV Length = 143 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 13/82 (15%) Query: 2 SDEADEAYSVTE-----------QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D D A E + + I++ ++I CE C I R + Sbjct: 58 ADLNDRASQEEEFSLELRTRDRERKLLRKIDKALERIKQGHFG--YCEQCDEEIGFHRLE 115 Query: 51 IFPGVTLCVECQAYQERQRKHY 72 P LC++C+ ER+ K + Sbjct: 116 ARPTAELCIDCKHLAERKEKSF 137 >UniRef50_D1N407 Transcriptional regulator, TraR/DksA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N407_9BACT Length = 133 Score = 60.7 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 E + E + I +++ C+ CG PI E R I P CV+C+ Sbjct: 64 HEMELQLLSEEGDVLRLIEDAIKRLVDGEYGK--CQECGEPISEGRLAIRPYAVYCVKCK 121 Query: 63 AYQERQRKH 71 E+Q H Sbjct: 122 EMHEKQGWH 130 >UniRef50_B0V602 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii AYE RepID=B0V602_ACIBY Length = 72 Score = 60.7 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 7/72 (9%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D+ D A + QL I + + CE CGN IP R++ + VTLCVE Sbjct: 7 MTDKIDIAQEL--QLKQVQIQ----PKDFSRPSLTECEECGNDIPIERQR-YGSVTLCVE 59 Query: 61 CQAYQERQRKHY 72 C+ QE+ K Y Sbjct: 60 CKNTQEKLSKRY 71 >UniRef50_B5TA71 Gp07 n=2 Tax=root RepID=B5TA71_9CAUD Length = 74 Score = 60.7 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + A + + I R + + G C CG PIP ARR P T C ECQ Sbjct: 6 EFELAQQIEQMQRDVAIELARAQCH--GAGAEECVECGEPIPAARRACVPYATRCTECQG 63 Query: 64 YQERQRKHY 72 E++R Y Sbjct: 64 RFEQRRTGY 72 >UniRef50_A6DK24 DnaK suppressor, putative n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DK24_9BACT Length = 147 Score = 60.7 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + E + + + + ++++ C C + IPEAR P LCV C+ Sbjct: 69 EINLNVMSDEGIKVQLVQQAIERLDEGKYGR--CVDCRDDIPEARLDAIPYAKLCVACKE 126 Query: 64 YQERQR 69 +E Q Sbjct: 127 TRESQG 132 >UniRef50_Q52PP5 Putative uncharacterized protein n=1 Tax=Xanthomonas phage Xp15 RepID=Q52PP5_9CAUD Length = 77 Score = 60.7 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVY-LCEACGNPIPEARRKIFPGVTLCVE 60 +DE+D A + E I ++ + V C C IP+ R G C+ Sbjct: 5 TDESDLASKLEELAKEDAIQKVLRDGKVPSDWVSPDCYDCDQEIPKDRLAT--GAFRCIH 62 Query: 61 CQAYQERQRKHY 72 CQ E +++Y Sbjct: 63 CQTKFEFNQRNY 74 >UniRef50_D0LZD2 Transcriptional regulator, TraR/DksA family n=3 Tax=Myxococcales RepID=D0LZD2_HALO1 Length = 124 Score = 60.7 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 13/83 (15%) Query: 1 MSDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARR 49 ++DE D A S + E+ + ++ +K+ +CE C PI + R Sbjct: 43 LADEMDLASSESYQSFEFRLRGREKSLLNKLDLALRKLGEGTFG--ICEVCEEPIGKKRL 100 Query: 50 KIFPGVTLCVECQAYQERQRKHY 72 + P TLC++C+ QER + + Sbjct: 101 EARPETTLCIQCKEAQERDERVF 123 >UniRef50_A7HW84 Transcriptional regulator, TraR/DksA family n=68 Tax=Alphaproteobacteria RepID=A7HW84_PARL1 Length = 146 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 13/82 (15%) Query: 2 SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50 D AD A S TE+ I+ ++I+ CE G PI R Sbjct: 64 PDIADRASSETERSLELRTRDRQRKLVSKIDAAIRRIDEGTYG--YCEETGEPISLKRLD 121 Query: 51 IFPGVTLCVECQAYQERQRKHY 72 P TL +E Q ER+ K Y Sbjct: 122 ARPIATLSIEAQERHERREKVY 143 >UniRef50_P44221 Uncharacterized protein HI1497 n=3 Tax=Haemophilus RepID=Y1497_HAEIN Length = 75 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 6/75 (8%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQ------KINAHGIPVYLCEACGNPIPEARRKIFPG 54 M+D D+ E L + +++A C CG PIP R + P Sbjct: 1 MADVLDQLNEREEALLQNILAPHLDTELSDDEVDAIAEAGRQCSECGLPIPTTRLRANPF 60 Query: 55 VTLCVECQAYQERQR 69 CV CQ E R Sbjct: 61 AHRCVSCQQDWEEGR 75 >UniRef50_C8WW56 Transcriptional regulator, TraR/DksA family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW56_ALIAD Length = 213 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%) Query: 7 EAYSVTEQLTMTG----INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 +V E+L + +I CE+CG PIP R + P CV+C+ Sbjct: 58 RNQAVGERLRDERALADVEDALSRIRQGTYG--QCESCGRPIPPDRLEAIPTTRRCVDCE 115 Query: 63 AYQERQR 69 E ++ Sbjct: 116 REVEARQ 122 >UniRef50_Q7UR73 Probable DnaK suppressor protein n=1 Tax=Rhodopirellula baltica RepID=Q7UR73_RHOBA Length = 140 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 2/66 (3%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 DE + E + I + CE CG PIP R K P C+ C+ Sbjct: 53 DELNSQLVEVESRELLAIEEAIARFEEGRFG--DCEDCGKPIPLNRLKAIPYAVDCINCR 110 Query: 63 AYQERQ 68 ER+ Sbjct: 111 RAAERE 116 >UniRef50_A1QYW3 DnaK suppressor protein n=21 Tax=Borrelia RepID=A1QYW3_BORT9 Length = 127 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 8 AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 A S E+ + IN+ +I+ + C AC I R P LC+ CQ +E+ Sbjct: 64 ALSSVEKKKLHLINQALYRISQNTYG--NCLACDKSITRERLVAIPYAFLCISCQTKKEK 121 Query: 68 QRKH 71 + K Sbjct: 122 KGKR 125 >UniRef50_B3B1J8 Conserved domain protein n=5 Tax=Gammaproteobacteria RepID=B3B1J8_ECO57 Length = 75 Score = 59.9 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 3 DEADEAYSVTEQLTMTGINRI--RQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 D++D A +V E+ + + R++ +C CG IP AR P CV Sbjct: 2 DDSDRAQAVMERGSERALCNRLTRKRQAVDTPGRRVCADCGGEIPAARLVAVPDAIRCVN 61 Query: 61 CQAYQERQ 68 CQ E + Sbjct: 62 CQNIMEAR 69 >UniRef50_Q8EDR9 C4-type zinc finger protein, DksA/TraR family n=1 Tax=Shewanella oneidensis RepID=Q8EDR9_SHEON Length = 71 Score = 59.5 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQ----KINAHGIPVYLCEACGNPIPEARRKIFPGVT 56 M D+ D A V +Q ++R R+ + + + C CG I R P Sbjct: 1 MIDQFDRAQEVEQQFRDNALSRQRKHKVEQPDINNKGERCCLDCGVVIEARRLVFMPTAV 60 Query: 57 LCVECQAYQER 67 CVECQ +ER Sbjct: 61 RCVECQTAKER 71 >UniRef50_A1K6D2 Conserved hypothetical DnaK suppressor protein n=2 Tax=Betaproteobacteria RepID=A1K6D2_AZOSB Length = 135 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 15 LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 + I R++I +C CG IP AR + P T CV CQ+ ER Sbjct: 71 RELRDIEAARERIAEGE--AGICVDCGEEIPFARLEAQPTATRCVRCQSLYER 121 >UniRef50_A1F607 Conserved domain protein n=3 Tax=Vibrio cholerae RepID=A1F607_VIBCH Length = 76 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 1 MSDEADEAYSVTEQLTMTGINRI--------RQKINAHGIPVYLCEACGNPIPEARRKIF 52 MSD D+A ++ +N +++ + C +CG+ IP+ R + Sbjct: 1 MSDLFDKAQERDQEFLALALNNHHAARRNMIQEQPDEDEEGNRYCLSCGSEIPKRRIEAQ 60 Query: 53 PGVTLCVECQAYQE 66 P CV CQ+ +E Sbjct: 61 PEAVRCVSCQSRKE 74 >UniRef50_A4XZG1 Transcriptional regulator, TraR/DksA family n=1 Tax=Pseudomonas mendocina ymp RepID=A4XZG1_PSEMY Length = 72 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPG--VTLC 58 M+D D A + + CE CG+PIP R + C Sbjct: 1 MADAVDIANDRMLDELDRRLANHA--LARQCPVAEECEDCGDPIPFERVQALAKLPCLRC 58 Query: 59 VECQAYQERQR 69 VECQ Y ER+ Sbjct: 59 VECQGYHERKG 69 >UniRef50_B4SQA3 Transcriptional regulator, TraR/DksA family n=35 Tax=Proteobacteria RepID=B4SQA3_STRM5 Length = 405 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 9/78 (11%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIP---------VYLCEACGNPIPEARRKIFP 53 DEA+ A TE +K+ C G I R + Sbjct: 325 DEAERATRETENSLELRTRDRYRKLIGKIDSTLKRLEAGDYGYCVDTGEEIGLERLEARL 384 Query: 54 GVTLCVECQAYQERQRKH 71 ++ Q E +K Sbjct: 385 TAERTIDAQERWEHLQKQ 402 >UniRef50_B7WXU2 Transcriptional regulator, TraR/DksA family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WXU2_COMTE Length = 76 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKI----NAHGIPVYLCEACGNPIPEARRKIFPGVT 56 M+D D A + QL + ++ C CG IPEARRK PG Sbjct: 1 MTDFFDRAQARELQLREDALRDQTRRAGLSGKTEADSATECA-CGALIPEARRKAVPGCQ 59 Query: 57 LCVECQAYQERQR 69 CV+C++ QER++ Sbjct: 60 RCVKCESAQERKK 72 >UniRef50_B2I3M6 Putative uncharacterized protein n=3 Tax=Acinetobacter RepID=B2I3M6_ACIBC Length = 66 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D D+A + L I + G C CG IPE RR+ GV C+E Sbjct: 1 MTDLIDKAQESADYLLQQEIAN---RCRFEGESEKECVECGEEIPE-RRRALGGVKFCIE 56 Query: 61 CQAYQERQRK 70 CQ ER+R+ Sbjct: 57 CQTKLERKRR 66 >UniRef50_A8R990 Putative uncharacterized protein n=2 Tax=unclassified T4-like viruses RepID=A8R990_9CAUD Length = 85 Score = 59.2 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 9 YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 E + I R+++ C C IPEARR+ GV C+ CQ+ + Sbjct: 12 QLEMEAVVQAAIVHARKQVAVERESAKYCFDCDEEIPEARRQAIKGVIYCIGCQSMHD 69 >UniRef50_D2LWG8 Transcriptional regulator, TraR/DksA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LWG8_BACS4 Length = 242 Score = 59.2 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E D A + + + I+ + I CE CG IP R + P C+ Q Sbjct: 62 EKDIALNEHSEQLLDEIDNALKAIEEGSYGK--CEVCGTDIPYERLEAIPNARRCI--QH 117 Query: 64 YQER 67 +E+ Sbjct: 118 AEEK 121 >UniRef50_Q06424 Uncharacterized 8.2 kDa protein in gpA 5'region n=21 Tax=root RepID=YO82_BPP2 Length = 74 Score = 58.8 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M D D +L IN ++ G +CE C PIP ARR +P T CV Sbjct: 1 MPDNVDFIQEQQAELLERQINAA--RVKHCGASALVCEECDAPIPAARRAAYPSATRCVS 58 Query: 61 CQAYQERQRKHY 72 CQ+ E + KHY Sbjct: 59 CQSVFEAKNKHY 70 >UniRef50_B9XR79 Transcriptional regulator, TraR/DksA family n=1 Tax=bacterium Ellin514 RepID=B9XR79_9BACT Length = 192 Score = 58.8 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%) Query: 1 MSD------EADEAYSVTEQLTMT--GINRIRQKINAHGIPVYLCEACGNPIPEARRKIF 52 M+D + D A S+ I ++I + V CE G PIP+AR + Sbjct: 82 MADSGTDNFDRDFALSLLSSDQDAIYEIEEALKRIEKNTYGV--CELTGKPIPKARLEAI 139 Query: 53 PGVTLCVECQAYQERQR 69 P V+ QA E++ Sbjct: 140 PWTRFTVQAQAQLEKEG 156 >UniRef50_B5EG80 Transcriptional regulator, TraR/DksA family n=4 Tax=Proteobacteria RepID=B5EG80_GEOBB Length = 118 Score = 58.8 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 9/78 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKI---------NAHGIPVYLCEACGNPIPEARRKIF 52 D D A +++ I +K+ +CE C I EAR K Sbjct: 39 PDPTDRATQESDRTFELRIRDRERKLIVKIQEALARIEAGTFGICEVCEEDISEARLKAR 98 Query: 53 PGVTLCVECQAYQERQRK 70 P TLC++C+ QE++ + Sbjct: 99 PVTTLCIDCKMEQEKKER 116 >UniRef50_Q3A0W2 DnaK suppressor protein n=2 Tax=Proteobacteria RepID=Q3A0W2_PELCD Length = 118 Score = 58.4 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 9/78 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKI---------NAHGIPVYLCEACGNPIPEARRKIF 52 D D A +++ I +K+ CE C PI R + Sbjct: 39 PDPTDRASLESDRNFELRIRDRERKLIMKIRQALERIEQGTFGECECCEEPIGAERLRAR 98 Query: 53 PGVTLCVECQAYQERQRK 70 P TLC++C+ QER+ K Sbjct: 99 PVTTLCIDCKTEQERKEK 116 >UniRef50_B8J371 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio RepID=B8J371_DESDA Length = 120 Score = 58.4 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 13/79 (16%) Query: 2 SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D AD A + + E+ + I +I+ +CE CG+ I R K Sbjct: 39 ADPADRATAESDRAFTLRIRDRERRLIRKIQAALTRIDDGTYG--ICEDCGDDISIPRLK 96 Query: 51 IFPGVTLCVECQAYQERQR 69 P LC+ C+A QE Sbjct: 97 ARPVTRLCINCKAKQEEDE 115 >UniRef50_C8PIH5 DnaK suppressor protein n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PIH5_9PROT Length = 118 Score = 58.4 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 13/80 (16%) Query: 2 SDEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D+ D A T+ I ++I + CE+CG I R K Sbjct: 40 ADDFDVASMNTDLSIEYSLNVNQQKAFLEIESALKRIENGTYGL--CESCGEQISLERLK 97 Query: 51 IFPGVTLCVECQAYQERQRK 70 + P LC+ C+ E+Q + Sbjct: 98 VNPEARLCISCKEQAEKQNR 117 >UniRef50_A2SLK5 Putative DNA-binding protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SLK5_METPP Length = 122 Score = 58.4 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 DE D Q + ++ Q++N CE CG PI R + P C++CQ Sbjct: 55 DELDITLISHWQRELDEVSAALQRLNTGSYG--HCERCGEPIGLPRLRALPEARHCLDCQ 112 Query: 63 AYQER 67 +R Sbjct: 113 EQADR 117 >UniRef50_C6E710 Transcriptional regulator, TraR/DksA family n=3 Tax=Geobacter RepID=C6E710_GEOSM Length = 130 Score = 58.4 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M +A A + + +T + ++++ CE CG I R ++ P CV Sbjct: 57 MLSDAGLAIADIRRNQLTALEEAQRRVEQGTYGK--CENCGEVIDIQRLRLMPFAAYCVS 114 Query: 61 CQAYQERQRK 70 CQ +E K Sbjct: 115 CQKEKEGPGK 124 >UniRef50_C1DXT7 Transcriptional regulator, TraR/DksA family n=5 Tax=Aquificales RepID=C1DXT7_SULAA Length = 144 Score = 58.0 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 11 VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 ++ T+ I+ +KI++ +CE CG I E R + P V LC++C +E Sbjct: 56 QADRETLYLIDLALRKIDSGIYG--ICEECGAVIGEKRLEAIPWVRLCIDCSQNEEI 110 >UniRef50_C5S4P2 Putative uncharacterized protein n=2 Tax=Pasteurellaceae RepID=C5S4P2_9PAST Length = 77 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 8/74 (10%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQK------INAHGIPVYLCEACGNPIPEARRKIFPG 54 MSD+ D EQL + + I + C CG PIP R + P Sbjct: 1 MSDDVDRIMEQDEQLLSLQLAPHLENQLSDDEIEQIALSGRDCIECGLPIPIQRLRAVPF 60 Query: 55 VTLCV--ECQAYQE 66 C+ CQ E Sbjct: 61 AVRCICCCCQQDYE 74 >UniRef50_Q6SHS2 DnaK suppressor protein n=1 Tax=uncultured marine bacterium 311 RepID=Q6SHS2_9BACT Length = 190 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 11/81 (13%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGI---------PVYLCEA--CGNPIPEARRK 50 +D++D A +K+ C CG I R + Sbjct: 107 ADDSDRATHEEGFTLEIKTRERERKLLTKIDQSVKGLSNHDYGFCLNPNCGVEIGIRRLE 166 Query: 51 IFPGVTLCVECQAYQERQRKH 71 P LC++C+ +E K Sbjct: 167 ARPTARLCIDCKTLEEITEKQ 187 >UniRef50_UPI000190AE5D hypothetical protein Salmoneentericaenterica_13393 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190AE5D Length = 75 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 1 MSDEAD--EAYSVTEQLTMTGINRIRQKIN-AHGIPVYLCEACGNPIPEARRKIFPGVTL 57 MS + D A + ++ IR + + C CG+ IP++RR+ PGV+L Sbjct: 1 MSIDVDDSMAQNESQVNIDNRFAEIRAALRIKGHVSRRHCRDCGDEIPDSRRESIPGVSL 60 Query: 58 CVECQAYQERQRK 70 C+ CQ ++E K Sbjct: 61 CMYCQEWRESGDK 73 >UniRef50_D2L9K5 Transcriptional regulator, TraR/DksA family n=2 Tax=Desulfovibrio RepID=D2L9K5_9DELT Length = 120 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 13/79 (16%) Query: 2 SDEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D AD A + +++ I +I+ C CG I AR K Sbjct: 39 ADPADRATAESDRAFTLRLRDRERRLIKKIKEALDRIDEGTYG--ECVECGEDISVARMK 96 Query: 51 IFPGVTLCVECQAYQERQR 69 P TLC++C++ QE Sbjct: 97 ARPVTTLCIKCKSRQEADE 115 >UniRef50_A9AKZ2 Transcriptional regulator, TraR/DksA family n=5 Tax=Burkholderia multivorans RepID=A9AKZ2_BURM1 Length = 256 Score = 58.0 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 + D A + + I R +Q++ C C P+ AR + P C CQA Sbjct: 185 DVDHALIGMKLAELRAIRRAQQRMVDGSYG--DCIDCDGPVGYARLRARPTAERCTHCQA 242 Query: 64 YQERQ 68 ER+ Sbjct: 243 LYERR 247 >UniRef50_C1I8K1 Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I8K1_9CLOT Length = 204 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 7 EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64 A E+ + I+ + I+ C+ CG I + R P C+EC+ Sbjct: 64 RALEANERALLDKIDDAVRAIDEGSYGK--CQKCGKEIDKERLDFLPYALNCIECEDV 119 >UniRef50_Q1IJ15 Transcriptional regulators, TraR/DksA family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJ15_ACIBL Length = 121 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 13/78 (16%) Query: 3 DEADEA-----------YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51 D AD A S ++ + + +I C +CG+ I R + Sbjct: 41 DIADRATNSYTKEFLFTQSANDRNLLQMVEGALIRIGEGTYG--ECVSCGSEINSKRLEA 98 Query: 52 FPGVTLCVECQAYQERQR 69 P C+ CQ E+ Sbjct: 99 VPWARYCIGCQEKIEKGE 116 >UniRef50_B3EAN1 Transcriptional regulator, TraR/DksA family n=8 Tax=Geobacter RepID=B3EAN1_GEOLS Length = 218 Score = 57.2 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 13/80 (16%) Query: 3 DEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51 D D+A S E+ + I+ +I +CE C IP R K+ Sbjct: 120 DIYDQASSERDRELGLLLNDREREKLHSIDEALLRIAEGEYG--ICEECDEDIPMGRLKV 177 Query: 52 FPGVTLCVECQAYQERQRKH 71 P CV+C++ E+ + Sbjct: 178 LPFTRHCVKCKSDLEKFQAQ 197 >UniRef50_C1ZKC1 DnaK suppressor protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZKC1_PLALI Length = 152 Score = 57.2 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 E + INR I V C+ C IP AR + P T+CVECQ QE Sbjct: 62 ETRELMQINRALALIEEGHYGV--CQKCSKAIPLARLQAVPFTTVCVECQRRQE 113 >UniRef50_A5EYQ4 DksA-like zinc finger domain containing protein n=8 Tax=root RepID=A5EYQ4_VIBC3 Length = 69 Score = 57.2 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGI--PVYLCEACGNPIPEARRKIFPGVTLCVE 60 D D+A + + R + C C +PIP+ R++ G C Sbjct: 2 DVIDDAAKTEAKFQQMALANHRARAMQTAYLPSRTHCLECDDPIPKERQEKVKGCQYCTP 61 Query: 61 CQAYQERQ 68 CQA +E++ Sbjct: 62 CQAAKEQR 69 >UniRef50_C8N773 TraR/DksA family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N773_9GAMM Length = 69 Score = 57.2 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D AD+A + E ++ CE CG+PIPEARR+ +P T C ECQ Sbjct: 2 DIADKAAEIEEMNRAQA--LAARRRIPAAPGCAECEDCGDPIPEARRRAYPSATRCTECQ 59 Query: 63 AYQERQRKHY 72 A ER K+ Sbjct: 60 ARHERHAKNR 69 >UniRef50_Q31G85 Transcriptional regulators, TraR/DksA family n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31G85_THICR Length = 142 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 9/79 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGI---------PVYLCEACGNPIPEARRKIF 52 +D +D A E +K+ + C+ G I AR + Sbjct: 61 ADPSDRASQEEEFALELRTRDRERKLISKIDKSLRDIEDGDYGYCKMSGEEIGLARMEAR 120 Query: 53 PGVTLCVECQAYQERQRKH 71 P TL VE + QE + K Sbjct: 121 PTATLTVEMKTKQEMREKQ 139 >UniRef50_B0K2T3 Transcriptional regulator, TraR/DksA family n=10 Tax=Thermoanaerobacteraceae RepID=B0K2T3_THEPX Length = 206 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%) Query: 8 AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 A E+ + I +++ +C C PI E R + P LC EC Sbjct: 67 ALKDNEKYILRQIEDAFKRMEIGTYG--ICAHCHKPIEEERLEALPYTVLCAEC 118 >UniRef50_A4X6U9 Zinc finger, DksA/TraR C4-type n=4 Tax=Micromonosporaceae RepID=A4X6U9_SALTO Length = 132 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 4 EADEAYSVTEQLTMT--GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 E D A S+ + ++ CE CG IP R +IFP T CV C Sbjct: 66 ERDTAQSLLRTILDRRAQFEHALTRLEEGTYG--FCEGCGASIPVERLEIFPSATTCVTC 123 Query: 62 QAYQERQR 69 + +ER+ Sbjct: 124 KQTRERRA 131 >UniRef50_B6BSH6 DnaK suppressor protein n=6 Tax=Bacteria RepID=B6BSH6_9RICK Length = 180 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 13/83 (15%) Query: 2 SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D D+A S T++ I++ +I C PI R Sbjct: 98 ADIVDQASSYTDKNVEMKAINRQIKLISEIDKALARIREDIYG--YCLDTAEPIGLKRLM 155 Query: 51 IFPGVTLCVECQAYQERQRKHYA 73 P + Q E+ K +A Sbjct: 156 ARPVAKYTIAAQEKHEKDEKVHA 178 >UniRef50_A3EVE8 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum RepID=A3EVE8_9BACT Length = 52 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 23/48 (47%) Query: 25 QKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72 ++ G C CG IP RR++ PGV C+ CQ +ER Y Sbjct: 4 SRLQPKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQKERERSSMEY 51 >UniRef50_B5YK78 RNA polymerase-binding protein DksA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK78_THEYD Length = 123 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 E+ + I + +KIN +CEACG IP R + P LC+EC+ QE K Sbjct: 64 ERKLLKKIEKTLEKINNGTYG--ICEACGAEIPIERLEARPVTDLCIECKTEQEEAEK 119 >UniRef50_Q2WA51 DnaK suppressor protein n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2WA51_MAGSA Length = 74 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 26/71 (36%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M+D AD A E + R + G Y C +CG IP+ RR PG C Sbjct: 1 MADLADLAKEREEANREAALAAFRARARPTGESAYFCRSCGERIPDERRAAVPGTNHCTF 60 Query: 61 CQAYQERQRKH 71 C H Sbjct: 61 CAQQITAASPH 71 >UniRef50_UPI0001788757 transcriptional regulator, TraR/DksA family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788757 Length = 187 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 D A T + + I+ Q+++ C CG IP R + P C+E Sbjct: 66 DLAIQETLERELEQIDAALQRMDQGEYGT--CAECGREIPYERLEALPYTAYCLE 118 >UniRef50_A0Q071 General stress protein, DnaK suppressor DskA n=3 Tax=Clostridium RepID=A0Q071_CLONN Length = 206 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 7 EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 A E + I+ + +C C N IP+ R + P CV C+ Q+ Sbjct: 64 IALEKAELEKLHEISESLYDMEHGTYG--ICRICKNQIPDDRLEAVPYAKYCVHCKNNQD 121 Query: 67 R 67 + Sbjct: 122 K 122 >UniRef50_A9ID32 Putative uncharacterized protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9ID32_BORPD Length = 94 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAH--GIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 + + A + E + +R +++ G C CG+ I AR + PG C++C Sbjct: 21 QYELAARLAEDERAAALEAVRARMSQEVRGSADGNCLDCGDAIAPARLAVLPGAARCMDC 80 Query: 62 QAYQERQRKHYA 73 Q E+Q+ +A Sbjct: 81 QTAHEKQQTRHA 92 >UniRef50_Q0EXX5 Transcriptional regulators, TraR/DksA family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXX5_9PROT Length = 123 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 9/78 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPV---------YLCEACGNPIPEARRKIF 52 D D+A ++ I +++ C+ACG PI R + Sbjct: 42 PDPTDQASMEIDRNFDLKIKDRERRLIKKIDQAIERIQNGEFGECDACGGPISVKRLEAR 101 Query: 53 PGVTLCVECQAYQERQRK 70 P TLC+EC+ QE++ + Sbjct: 102 PVTTLCIECKTAQEQEER 119 >UniRef50_B6EIS7 Probable rRNA transcription initiatior protein,putative phage gene n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EIS7_ALISL Length = 71 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINA--HGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 D D A ++ + T + K C C IP+AR++ G CV Sbjct: 2 DAFDRASALEAKQTEVALANHMAKQKNKVEIKSAEECIECEKAIPKARQEAVKGCQYCVN 61 Query: 61 CQAYQER 67 CQ ++ Sbjct: 62 CQELADK 68 >UniRef50_B8DLC7 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLC7_DESVM Length = 119 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINA-HGIPVYLCEACGNPIPEARRKIFPGVTLCV 59 M D Y +Q T T + +R + C+ CGN IP AR P T CV Sbjct: 42 MPDVEGMTYRSWKQRTETRLQVLRATLERLDDEDFGYCDDCGNEIPAARLLAVPTTTRCV 101 Query: 60 ECQAYQERQRKH 71 C + +E + Sbjct: 102 HCMSAREERGAQ 113 >UniRef50_Q1LEV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LEV8_RALME Length = 123 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 8 AYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 A ++ + I R ++ +C C PIP R + +P C CQ E+ Sbjct: 60 AMREHYRVELEDIAAARGRMTLG--SYAICRECEEPIPFERLQAYPTAKRCTACQREHEQ 117 Query: 68 QR 69 +R Sbjct: 118 KR 119 >UniRef50_D1CBT8 Transcriptional regulator, TraR/DksA family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT8_THET1 Length = 126 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + A + + I ++++ +C CG IP R P CV Q Sbjct: 62 EKEIALQRNLRSVLNEIEAALKRMDEGTYG--ICIDCGQEIPIERLMARPYAVRCVADQE 119 Query: 64 YQER 67 +R Sbjct: 120 KYDR 123 >UniRef50_B1H0G2 Putative dnaK suppressor n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0G2_UNCTG Length = 119 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 13/75 (17%) Query: 3 DEADEAYSVTEQLT-----------MTGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51 DE D A +E+ + IN KI + CE C N I R K+ Sbjct: 41 DEIDTASQNSEKEMYFELVASDKMTLDAINDALVKIEKNAYGK--CEGCSNNILLERLKV 98 Query: 52 FPGVTLCVECQAYQE 66 P C++CQ E Sbjct: 99 IPWAKYCIQCQEESE 113 >UniRef50_D1C120 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C120_SPHTD Length = 130 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 15 LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 I R K++ CE C PIP R + P C++CQA +R++ Sbjct: 73 DRKVLIERAITKMDQGEYG--YCENCKRPIPPDRLEALPFARYCIDCQADMDRRQ 125 >UniRef50_A5W685 Transcriptional regulator, TraR/DksA family n=11 Tax=Pseudomonas RepID=A5W685_PSEP1 Length = 154 Score = 56.1 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 13/81 (16%) Query: 2 SDEADEAYSVTEQ-----------LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 SD AD A E+ + + +I C+ G PI R Sbjct: 72 SDPADVASVEEERSWLVNAIDRDQRLLPQLEMALDRIA--DESFGWCDDSGEPIGLKRLL 129 Query: 51 IFPGVTLCVECQAYQERQRKH 71 I P C+E Q E+ +H Sbjct: 130 ISPTTKYCIEAQERHEQLDRH 150 >UniRef50_A8EWK7 DnaK suppressor protein DksA n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EWK7_ARCB4 Length = 123 Score = 56.1 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 + + I +KI +C+ CG IP R K P C EC+ E++ Sbjct: 63 QLDELKQIEEALKKITLGTYG--ICDMCGINIPLGRLKAKPFAKFCTECRTVYEQEN 117 >UniRef50_Q2GEN7 DnaK suppressor protein n=2 Tax=Neorickettsia RepID=Q2GEN7_NEOSM Length = 137 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 4/68 (5%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D A ++ I+ +++ CE G+ I R + P CV+ Q Sbjct: 61 DIIMSAQKRN--SLLSEIDEALERMEQGVYG--YCEETGDEIGFGRLDLEPTARYCVDVQ 116 Query: 63 AYQERQRK 70 +++ + Sbjct: 117 ERLDKKNR 124 >UniRef50_C0QW50 DNA-binding transcriptional regulator of transcription, DnaK suppressor protein n=2 Tax=Brachyspira RepID=C0QW50_BRAHW Length = 121 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 10 SVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 S E+ + +N ++I C C I E R P CV C + E ++ Sbjct: 59 SQKEKDKLDMLNNALKRIEEGTYGK--CIDCKEEINEERLTALPYTLRCVNCMSKYEDKK 116 Query: 70 KH 71 + Sbjct: 117 RR 118 >UniRef50_Q1D0G7 C4-type zinc finger domain protein, DksA/TraR family n=2 Tax=Cystobacterineae RepID=Q1D0G7_MYXXD Length = 130 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%) Query: 17 MTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 + + + K+ CE CG+ IP R + P CV CQ Sbjct: 66 LARVLKALGKLRDDPDAFGECEECGDEIPLGRLRAMPYAEFCVTCQ 111 >UniRef50_Q221D7 Transcriptional regulators, TraR/DksA family n=3 Tax=Comamonadaceae RepID=Q221D7_RHOFD Length = 124 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 + E + A + + ++ ++I + C CG IP AR P C+ C Sbjct: 55 ARELEFALDARDSEELDRLDAALRRIEDGSYGL--CVDCGVGIPAARLHAAPDALRCIAC 112 Query: 62 QAYQERQRKHYA 73 Q E+ + A Sbjct: 113 QEKLEKAQARQA 124 >UniRef50_A0LGY5 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGY5_SYNFM Length = 257 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 18 TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 I+ KI +CE+CG+ I R + P LCV+C E++ Sbjct: 65 EQIDLALGKIAIGEYG--ICESCGDDIALKRLEAIPWARLCVDCARDFEQR 113 >UniRef50_Q2B4E3 Putative uncharacterized protein n=4 Tax=Bacillus RepID=Q2B4E3_9BACI Length = 252 Score = 55.3 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 E D+A + + +N+ Q I C CG +P R + P CV+ Sbjct: 63 EKDQAIEEHQNEELDKVNKALQAIEDGTYGK--CRECGKDLPFERLEAVPTALYCVD 117 >UniRef50_A4V7S0 Putative transcriptional regulator DnaK suppressor protein homolog n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7S0_PSEFS Length = 138 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 2/59 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71 E+ I +I C+ G PI R P + E Q ER KH Sbjct: 76 ERAEAMAIKAALVRIEEDAYG--WCDDSGEPIGLKRLLNNPTASRTTEAQTRFERLGKH 132 >UniRef50_D2R5D7 Transcriptional regulator, TraR/DksA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5D7_9PLAN Length = 150 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 11 VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 E + I+R +K+ A + C++CG PI R + P C+EC ER+ Sbjct: 60 EVESRELMQIDRAIEKMRAGRYGL--CDSCGGPIKLIRLQAVPYAIECIECARRDERRE 116 >UniRef50_C6D536 Transcriptional regulator, TraR/DksA family n=2 Tax=Paenibacillus RepID=C6D536_PAESJ Length = 234 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A E L +T I++ + ++ C ACG PIP+ R + P CVE Q Sbjct: 64 DLALLENEDLHLTRISQALEAMDNGTYG--QCRACGKPIPDERLEALPDSLYCVEHAPRQ 121 Query: 66 ERQRKH 71 E + Sbjct: 122 ETSHRQ 127 >UniRef50_C9S0U4 Transcriptional regulator, TraR/DksA family n=14 Tax=Bacillaceae RepID=C9S0U4_GEOSY Length = 269 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 E D A + + I R I C CG PIP R + P C E Sbjct: 63 EKDLALKEHAERELREIERALGAIADGTYGT--CRVCGRPIPYERLEALPTTLYCRE 117 >UniRef50_B0VG86 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG86_9BACT Length = 148 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 11 VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 +E+ + +N Q+I+ +CE CG I E R +I P T CV C+ E +++ Sbjct: 87 ESEREKIRQLNEALQRISDGTYG--ICEFCGEFIQENRLEIIPYATCCVACKEKNEDKKR 144 Query: 71 H 71 Sbjct: 145 R 145 >UniRef50_B0ZSI9 Putative uncharacterized protein n=1 Tax=Halomonas phage phiHAP-1 RepID=B0ZSI9_9CAUD Length = 75 Score = 55.3 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 2/74 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKI--NAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 MSD AD A +L R ++ C CG I RRK P C Sbjct: 1 MSDVADIAGEEQARLEEERAARWAREQAARESQAGSEYCVECGFDIDPRRRKAMPSAIRC 60 Query: 59 VECQAYQERQRKHY 72 CQ + +R K Y Sbjct: 61 FGCQEFVDRTAKGY 74 >UniRef50_C0ZG84 Putative uncharacterized protein yteA n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZG84_BREBN Length = 257 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 E D A ++ T+ I++ Q++ + C CG IP R + P C E Sbjct: 63 EKDLALDSLDRETLKEIDQALQRMEEGTYGL--CTVCGEQIPVERLEALPQSQTCKE 117 >UniRef50_Q0A892 Transcriptional regulators, TraR/DksA family n=10 Tax=Gammaproteobacteria RepID=Q0A892_ALHEH Length = 149 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 13/80 (16%) Query: 2 SDEADEAYSVTEQLTMTGIN-----------RIRQKINAHGIPVYLCEACGNPIPEARRK 50 DE D A E I + ++I CE G PI R Sbjct: 68 PDEHDRATLEEEYQLELRIRERETRLLRKIDQALRRIETGEYG--YCEVTGEPIGIPRLL 125 Query: 51 IFPGVTLCVECQAYQERQRK 70 P TL +E + E + + Sbjct: 126 ARPTATLSIEAKERAEVEER 145 >UniRef50_A0RK79 DnaK suppressor protein n=74 Tax=Bacillus RepID=A0RK79_BACAH Length = 243 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 13/68 (19%) Query: 3 DEADEAYSVTEQLTMTGI-----------NRIRQKINAHGIPVYLCEACGNPIPEARRKI 51 AD A + E+ G+ QKI A +CE G IP R + Sbjct: 49 HPADMATELYEREKDFGLIELWHKQLEDTKHALQKIEAGTYG--ICEVSGEEIPFERLEA 106 Query: 52 FPGVTLCV 59 P T C+ Sbjct: 107 MPTATTCI 114 >UniRef50_O66611 Uncharacterized protein aq_250 n=3 Tax=Aquificaceae RepID=Y250_AQUAE Length = 145 Score = 54.9 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72 E T+ I+ +KI +CE CG IPE R P C +C ER+ Y Sbjct: 64 EIATLREIDYALEKIEKGTYG--ICERCGEEIPEPRLCAIPWTRYCAKCAEEVERESGTY 121 >UniRef50_Q0VNX0 DnaK suppressor protein homolog, DksA/TraR family n=2 Tax=Alcanivorax RepID=Q0VNX0_ALCBS Length = 140 Score = 54.9 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 13/83 (15%) Query: 2 SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D D A +Q + I +++ C+ G+PI R Sbjct: 55 ADPLDAAVEEETCRHQLRFMARQQALLGKIRGALRRLQNGDYG--YCKISGDPIGLPRLL 112 Query: 51 IFPGVTLCVECQAYQERQRKHYA 73 P C E +A E+ +HYA Sbjct: 113 ARPTTEYCAEVKARLEQNERHYA 135 >UniRef50_Q1GXR9 Transcriptional regulators, TraR/DksA family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXR9_METFK Length = 72 Score = 54.9 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D A + + GI + + G C+ CG I + RR GV C+ CQ Sbjct: 5 DWAQEMELREREAGIAEKQLQALRSGPGYSHCKDCGEEIEKERR-AIKGVKRCIFCQERY 63 Query: 66 ER 67 ER Sbjct: 64 ER 65 >UniRef50_B4U7Z4 Transcriptional regulator, TraR/DksA family n=3 Tax=Aquificaceae RepID=B4U7Z4_HYDS0 Length = 118 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 E + I +I CE CG IP R K P ++C+ C+ +E Sbjct: 62 ETKLLKKIEYTLARIENGTYG--YCEVCGAEIPYERLKARPVTSMCIRCKELEEENE 116 >UniRef50_D2R7B0 Transcriptional regulator, TraR/DksA family n=2 Tax=Planctomycetaceae RepID=D2R7B0_9PLAN Length = 123 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 1 MSD--------EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIF 52 M+D E + + T+ I ++I A V C CG IP+AR ++ Sbjct: 50 MADVGTDNFEQEFTLSLMEHDGSTLEQIEAALERIEAGAYGV--CTECGCKIPKARLEVL 107 Query: 53 PGVTLCVECQAY 64 P CV+C Sbjct: 108 PYTAHCVKCAEK 119 >UniRef50_A4NCL4 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae 3655 RepID=A4NCL4_HAEIN Length = 78 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 6/77 (7%) Query: 1 MSDEADEAYSVTEQLTMTGINRIR------QKINAHGIPVYLCEACGNPIPEARRKIFPG 54 M+D D+ Q+ R + I C+ CG IP+AR P Sbjct: 1 MTDILDQLVERESQIEALQQAARRINPLSAEAIQQIAEDGRNCDECGELIPKARLLAQPF 60 Query: 55 VTLCVECQAYQERQRKH 71 CV+CQA E+ K Sbjct: 61 ARCCVDCQALLEKTNKR 77 >UniRef50_C8X580 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X580_DESRD Length = 115 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 13/80 (16%) Query: 1 MSDEADEAY-----------SVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARR 49 ++D AD+A + + + ++ + CE CG I R Sbjct: 38 LADPADQATLSTDRQLALLRQQRLLHQLHEVEQALHQLANGEYGL--CEECGEEIGVPRL 95 Query: 50 KIFPGVTLCVECQAYQERQR 69 P LC+ECQ ER Sbjct: 96 VACPSARLCIECQEQLERAA 115 >UniRef50_B4D2T0 Transcriptional regulator, TraR/DksA family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2T0_9BACT Length = 187 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 +DE +Q + IN KI V CE G PIP R K P E Sbjct: 83 ADE-SRGVLSHDQDLLVEINHALSKIEEGTYGV--CELTGQPIPAERLKAVPWARFTREA 139 Query: 62 QAYQERQR 69 QA E + Sbjct: 140 QAEFEARG 147 >UniRef50_Q72G22 C4-type zinc finger protein, DksA/TraR family n=3 Tax=Desulfovibrio vulgaris RepID=Q72G22_DESVH Length = 176 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 13/76 (17%) Query: 2 SDEADEAYSVTEQLTMT-----------GINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +DE + A + E + +++ A+ V CE CG IP AR K Sbjct: 87 ADENEFASRLAEMALSVTLLHRAEHRIGLLENALRRLEAYDYGV--CEGCGEDIPVARLK 144 Query: 51 IFPGVTLCVECQAYQE 66 P LCV CQ E Sbjct: 145 ASPATRLCVFCQQESE 160 >UniRef50_Q1GI88 Transcriptional regulators TraR/DksA family n=26 Tax=Alphaproteobacteria RepID=Q1GI88_SILST Length = 158 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 13/82 (15%) Query: 2 SDEADEAYSVTEQLTMTG-----------INRIRQKINAHGIPVYLCEACGNPIPEARRK 50 D AD A T++ I+ ++I+ C+ G PI R Sbjct: 76 PDVADRASEETDRALELRTRDRQRKLVAKIDAAIRRIDEGEYG--YCDVTGEPISLKRLD 133 Query: 51 IFPGVTLCVECQAYQERQRKHY 72 P T+ +E Q ER+ K + Sbjct: 134 ARPIATMSLEAQERHERREKVH 155 >UniRef50_Q2GI38 DnaK suppressor protein n=9 Tax=Anaplasmataceae RepID=Q2GI38_EHRCR Length = 152 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 13/83 (15%) Query: 2 SDEADEAYSVTE-----------QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 +D D A + + IN+ Q+I+ CE G I AR + Sbjct: 57 ADLTDMATKEHNIVLILNTRKRNEALIIEINKAIQRIDDGLYG--YCEETGEKIGIARLE 114 Query: 51 IFPGVTLCVECQAYQERQRKHYA 73 P +E Q +E+Q+K Y+ Sbjct: 115 ANPITLYSIEEQERREKQQKLYS 137 >UniRef50_C1F3S7 Putative RNA polymerase-binding protein DksA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3S7_ACIC5 Length = 139 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 13/75 (17%) Query: 3 DEADEAYSVTEQLT-----------MTGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51 D AD+A +Q ++ + +++ C CG I R + Sbjct: 56 DPADQAVMSYQQELIFSQGTNKHTQLSLVRLALERLEDGSYG--ECAECGEDISPRRLEA 113 Query: 52 FPGVTLCVECQAYQE 66 P C+ CQ E Sbjct: 114 VPWTPYCISCQEKVE 128 >UniRef50_A0LCU1 Transcriptional regulator, TraR/DksA family n=2 Tax=Proteobacteria RepID=A0LCU1_MAGSM Length = 155 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 9/80 (11%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKI---------NAHGIPVYLCEACGNPIPEARRKIF 52 +D D A T++ +K+ C CG I R + Sbjct: 67 ADPTDRASLETDRNFELRTRDRERKLIGKIDRTIRTIEEDEYGFCSGCGVEIGLGRLQAR 126 Query: 53 PGVTLCVECQAYQERQRKHY 72 P LC++C+ +E+ + + Sbjct: 127 PVTDLCIDCKTKEEQMERVH 146 >UniRef50_Q2SLB9 DnaK suppressor protein n=7 Tax=Gammaproteobacteria RepID=Q2SLB9_HAHCH Length = 141 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 13/82 (15%) Query: 2 SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 SDE D A EQ + I + ++I C G PI R Sbjct: 60 SDENDRASREEQSAIALRIVDREQKLLPKIQQSLKRIRLGTYG--YCLESGEPIGIPRLL 117 Query: 51 IFPGVTLCVECQAYQERQRKHY 72 P C E +A +E + HY Sbjct: 118 ARPTAEYCAEVKALKEIKEHHY 139 >UniRef50_Q029W8 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q029W8_SOLUE Length = 149 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 13/75 (17%) Query: 2 SDEADEAYSVTE-----------QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 SDE D + E + I +++ V C C PI R Sbjct: 59 SDEGDLSQQHHEEWIFLNRNTIDMKLLREIADALHRMDTGHYGV--CPECEEPISAKRLD 116 Query: 51 IFPGVTLCVECQAYQ 65 P CV CQ Sbjct: 117 AVPWARYCVTCQEKI 131 >UniRef50_C3XG00 DnaK suppressor protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XG00_9HELI Length = 122 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Query: 5 ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64 D++ Q M I+ K + +CE C + I R + P C+ C+ Sbjct: 54 FDDSMLERNQKEMKEISASLAKFDDGIYG--ICEMCEDEIGIERLQAKPHARFCINCREI 111 Query: 65 QERQRKH 71 E+ K Sbjct: 112 YEKSEKQ 118 >UniRef50_Q7UEL7 Probable dnaK (DksA-like) supressor protein n=1 Tax=Rhodopirellula baltica RepID=Q7UEL7_RHOBA Length = 121 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 9 YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 + +E + I +++ CE CG IP R ++ P CV CQ E Sbjct: 59 MAESESRELADIEEALERLRDGTFG--DCEDCGKSIPMNRLQVVPHARRCVRCQKASE 114 >UniRef50_Q2SPR7 DnaK suppressor protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPR7_HAHCH Length = 107 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D+ A V ++ + + + Q++ V C ACG IPE+R ++ P LCV C Sbjct: 46 DDVLNALKVETEIEINQVKKALQRLQQGEYGV--CVACGEDIPESRLQVLPFAELCVSCA 103 Query: 63 AYQE 66 + E Sbjct: 104 SKSE 107 >UniRef50_D0LUD2 Transcriptional regulator, TraR/DksA family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUD2_HALO1 Length = 127 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHY 72 E + I+ +++ A + CE CG I R P TLC++C++ +E+ + Sbjct: 64 ETFLLNKIDAALERLKAGT--IDECEECGGEISVQRLIARPVTTLCIDCKSEREQSEEGR 121 Query: 73 A 73 Sbjct: 122 T 122 >UniRef50_Q73KX9 C4 zinc finger domain protein, DksA/TraR family n=1 Tax=Treponema denticola RepID=Q73KX9_TREDE Length = 119 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 13/77 (16%) Query: 3 DEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51 D AD A T++ + I+ ++I C C IPE R K Sbjct: 42 DFADLASYSTDRDMLEFIGENNVKKLQKIDSALERIREGKYGK--CITCKEQIPEDRLKA 99 Query: 52 FPGVTLCVECQAYQERQ 68 P C+ CQA E++ Sbjct: 100 LPYALKCIHCQAKSEKK 116 >UniRef50_C4WG44 Transcriptional regulator, TraR/DksA family n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WG44_9RHIZ Length = 76 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 + A EQ GI R + C CG+ I RR P CV+CQ Sbjct: 9 ELADMRAEQERDAGIAAARAPLKQT--GTLDCIRCGDEIEAERRAALPSARRCVDCQESF 66 Query: 66 ERQR 69 ER + Sbjct: 67 ERWQ 70 >UniRef50_Q0HYS5 Transcriptional regulators, TraR/DksA family n=3 Tax=Shewanella RepID=Q0HYS5_SHESR Length = 68 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 2/66 (3%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D E K C CG+ IPE RR+ GV LCV CQ Sbjct: 5 DLVTREQLRAEHRFEQQRKAQAAKPVP--PSATDCAECGDEIPEGRRQAILGVRLCVTCQ 62 Query: 63 AYQERQ 68 ++E Q Sbjct: 63 TWRESQ 68 >UniRef50_C1A882 Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A882_GEMAT Length = 127 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 8/78 (10%) Query: 1 MSDEADEAYSVT--------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIF 52 M+D+ +A E + +++ +++ C CG I R Sbjct: 49 MADQGTDAMEREKAFLFASKEGRFLWHLDQALRRLYKAPATFGKCHQCGEDIAFERLDAL 108 Query: 53 PGVTLCVECQAYQERQRK 70 P C+ C+ +E +K Sbjct: 109 PNARYCIACKQREEDAKK 126 >UniRef50_B2A2J0 Transcriptional regulator, TraR/DksA family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J0_NATTJ Length = 216 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 2/58 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 E D S + + I +KI CE+CG I R P C+ C Sbjct: 60 EKDTTLSNLREQKLREIEIALEKIANGDYGK--CESCGKEINNERLDAVPYTRYCISC 115 >UniRef50_C9RQK2 Transcriptional regulator, TraR/DksA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQK2_FIBSS Length = 157 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E + + + E + + ++I V C+ CG IP+AR P T CV C+ Sbjct: 67 ETNLSLAAREGKYLVYLEEALKRIKNGTFGV--CKICGQLIPKARLMAVPTATKCVNCKE 124 Query: 64 YQERQR 69 +++ Sbjct: 125 ETKKKE 130 >UniRef50_Q1Q506 Similar to DnaK suppressor protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q506_9BACT Length = 140 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 10/74 (13%) Query: 1 MSDEADEAYSVTEQLTMTG--------INRIRQKINAHGIPVYLCEACGNPIPEARRKIF 52 M+D + Y + + I+ ++I +CEAC I R K Sbjct: 65 MADVGTDNYERELMIELMQSGEDSVRSIDDALERIEEGTFG--ICEACEKKINRERLKAV 122 Query: 53 PGVTLCVECQAYQE 66 P +LCV CQ +E Sbjct: 123 PYASLCVNCQREEE 136 >UniRef50_B2KE71 Transcriptional regulator, TraR/DksA family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KE71_ELUMP Length = 258 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 13/75 (17%) Query: 3 DEADEAYSVTEQLTM-----------TGINRIRQKINAHGIPVYLCEACGNPIPEARRKI 51 D D A ++ + I +KI+ CE C +P+ R K Sbjct: 184 DPIDTATQSLDKEILFEQTDNSHTQIDQIESALRKIDKGIYGK--CENCRQLLPKKRIKA 241 Query: 52 FPGVTLCVECQAYQE 66 P CV CQ+ +E Sbjct: 242 LPFARYCVVCQSSKE 256 >UniRef50_Q39WX5 Transcriptional regulators, TraR/DksA family n=4 Tax=Geobacter RepID=Q39WX5_GEOMG Length = 130 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 7 EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 A + + +T ++ ++ C+ CG I E R ++ P C+ CQ +E Sbjct: 63 MAVADIRRQELTRMDEALGRLKEGRYG--FCDECGAEIDEGRLRVAPYAPCCISCQTRRE 120 >UniRef50_B9JYG7 DnaK suppressor protein n=2 Tax=Agrobacterium vitis S4 RepID=B9JYG7_AGRVS Length = 72 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 5 ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64 + A EQ + R + C CG IP+ARR +P C +CQ Sbjct: 7 FELAEERIEQERDAKVAAARADLKKA--GATECLDCGRAIPQARRFAYPSAIRCFDCQVS 64 Query: 65 QERQ 68 ER+ Sbjct: 65 IERE 68 >UniRef50_D1C5L2 Transcriptional regulator, TraR/DksA family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5L2_SPHTD Length = 132 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 16 TMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 + ++ ++ V C CG I AR K P T C+ CQ + E + Sbjct: 79 ELAEVDAALDRLERGTYGV--CIDCGEMIDPARLKALPTATRCLRCQTHFEYR 129 >UniRef50_P80872 General stress protein 16O n=2 Tax=Bacillus subtilis group RepID=G16O_BACSU Length = 163 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 D+ ++ + +NR QK+ V CE G IP R + P + VE QA Sbjct: 60 DQTVKEIDRELLEEVNRALQKMKDGTYGV--CEKTGQEIPYERLEAVPYARMTVEAQADV 117 Query: 66 E 66 E Sbjct: 118 E 118 >UniRef50_C7R8Q8 Transcriptional regulator, TraR/DksA family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R8Q8_KANKD Length = 120 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M EA ++ + + + ++I C C PI R ++ P LC++ Sbjct: 52 MDQAMSEASVERDKKRLVAVRKALKRIEEGQYG--FCLECDEPISAKRLEVAPETELCLD 109 Query: 61 CQAYQERQRK 70 CQ+++E + Sbjct: 110 CQSFKEEHDR 119 >UniRef50_A6Q9W6 DnaK suppressor protein DksA n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q9W6_SULNB Length = 118 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 5 ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64 D A ++ + I+ KI +CE C PI +AR ++ C+ C+ Sbjct: 55 VDSAILEQQRKELAEIDLALDKIKNGTYG--ICEMCEEPIGKARLEVKNFARFCITCREI 112 Query: 65 QERQRK 70 E++++ Sbjct: 113 NEKEQQ 118 >UniRef50_B9L783 Transcriptional regulator, TraR/DksA family n=1 Tax=Nautilia profundicola AmH RepID=B9L783_NAUPA Length = 117 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 13/79 (16%) Query: 3 DEADEAYSVTEQLTMTGI-----------NRIRQKINAHGIPVYLCEACGNPIPEARRKI 51 DEAD A + + I N +KI+ +CE C +PI EAR KI Sbjct: 41 DEADFAAASMDSGRDYQIYINQKKELEEINDALKKIDEGTFG--ICEMCEDPIQEARLKI 98 Query: 52 FPGVTLCVECQAYQERQRK 70 P C+ C+ E++ K Sbjct: 99 KPYAKYCIICREIIEKEGK 117 >UniRef50_B2UIX3 Transcriptional regulator, TraR/DksA family n=6 Tax=Ralstonia RepID=B2UIX3_RALPJ Length = 120 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 14 QLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 + + +N R+++ H +C CG IP R + P C+ CQ ER+ Sbjct: 66 RSELEQLNAARERMQQHSYG--ICVDCGEAIPFLRLQAQPTAMRCLPCQTACERR 118 >UniRef50_A0AZX7 Transcriptional regulators, TraR/DksA family n=38 Tax=Burkholderia RepID=A0AZX7_BURCH Length = 130 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 + D A + + I R +Q++ C C + R P C CQ+ Sbjct: 59 DVDHALIGMKLTELRAIGRAQQRMRDGSYG--ECIDCDGSVGYERLLARPTAERCTHCQS 116 Query: 64 YQERQ 68 ER+ Sbjct: 117 LYERR 121 >UniRef50_C6J3C7 DnaK suppressor protein n=2 Tax=Bacillales RepID=C6J3C7_9BACL Length = 245 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 6 DEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 D A + +L + + ++I C CG PI R + P C + Sbjct: 66 DLALAEHHELHLARVEDALERIEDGSYG--YCATCGKPISYERLRAIPETAYCKD 118 >UniRef50_A6C001 Probable DnaK suppressor protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C001_9PLAN Length = 141 Score = 53.4 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 9 YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 + E + I R I CE+C IP AR K P CV C +E Sbjct: 49 LAEIEYKELMQIRRAISLIQEGRYG--HCESCNKNIPIARLKAVPYAMFCVSCAEQRE 104 >UniRef50_Q12E87 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q12E87_POLSJ Length = 134 Score = 53.4 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 5 ADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAY 64 D A EQ+ + R+ N C CG I R P C CQA Sbjct: 65 VDHAAHELEQVL-AALRRLDDATNGKSPGYGHCLDCGEAIDLRRLAALPATPYCTACQAI 123 Query: 65 QERQRK 70 E +R+ Sbjct: 124 HEHERQ 129 >UniRef50_A6DCX4 Transcriptional regulator, TraR/DksA family protein n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX4_9PROT Length = 116 Score = 53.4 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 13 EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 ++ + I ++I +CE C PI E R KI P C+ C+ E++ K Sbjct: 61 QKQELKEIEEALKRIEEGSYG--ICEMCDEPIQEERLKIKPYAKYCIICREIIEKEEK 116 >UniRef50_Q01TC0 Transcriptional regulator, TraR/DksA family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TC0_SOLUE Length = 136 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 9 YSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 S + T+ ++ ++I C CG PI AR + P C Q E Sbjct: 70 NSSVDSETLQQVDDALRRIEQGSYGK--CVICGKPIEPARLEAIPWTPYCKADQERLE 125 >UniRef50_Q1AWF1 Transcriptional regulators, TraR/DksA family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AWF1_RUBXD Length = 130 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQA 63 E D + + + + R QKI V C+ G PIP+ R + P VE Q Sbjct: 63 EMDATVGLQTRRRLEDVERALQKIEEGTYGV--CDDTGEPIPKGRLEAMPEAIRTVEAQQ 120 Query: 64 YQERQRK 70 +R R+ Sbjct: 121 RHDRVRR 127 >UniRef50_B8H0C0 DnaK suppressor protein homolog n=110 Tax=Bacteria RepID=DKSA_CAUCN Length = 142 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGI---------PVYLCEACGNPIPEARRKIF 52 +D AD A S T++ ++K+ + CE G PI AR + Sbjct: 60 ADLADRASSETDRALELRTRDRQRKLISKIDQALRRVEDGSYGYCEETGEPIGLARLEAR 119 Query: 53 PGVTLCVECQ 62 P T+ VE Q Sbjct: 120 PTATMSVEAQ 129 >UniRef50_Q12HC6 Transcriptional regulators, TraR/DksA family n=1 Tax=Polaromonas sp. JS666 RepID=Q12HC6_POLSJ Length = 130 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 11 VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 +Q + I + ++++ C CG PIP R K P + C+ CQ E+ R Sbjct: 66 QRDQEELRAIQQAQERMADGSYGG--CIDCGQPIPFERLKAQPSASRCIACQTRFEQGR 122 >UniRef50_Q7VGT4 DnaK suppressor protein DskA n=2 Tax=Helicobacter RepID=Q7VGT4_HELHP Length = 118 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 20 INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 I QKI V CE C + I R K+ P C+ C+ E+ +K Sbjct: 67 IRNALQKIKDGTFGV--CEMCDDEIDVERLKVKPHAKYCINCRELFEQTQK 115 >UniRef50_B0SIE7 DnaK suppressor protein n=6 Tax=Leptospira RepID=B0SIE7_LEPBA Length = 154 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 14/84 (16%) Query: 1 MSDEADEAYS-----------VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARR 49 M D AD A E T+ I +KI +CE IP AR Sbjct: 52 MGDIADIASELNSEALTSVLTENEIETLREIELALEKIENGTYG--ICEGTKKKIPLARL 109 Query: 50 KIFPGVTLCVECQAYQERQRKHYA 73 K P VE + ++ A Sbjct: 110 KAIPWTRFTVEFAEQM-AKSRNRA 132 >UniRef50_B2ULP7 Transcriptional regulator, TraR/DksA family n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2ULP7_AKKM8 Length = 207 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Query: 4 EADEAYSV--TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 + D A S+ EQ + I + +I+ +CE IP R + P L VEC Sbjct: 110 DRDFALSLLSKEQDGLYEIEQALARIDNGTYG--ICEMSYKVIPILRLEAIPFARLTVEC 167 Query: 62 QAYQERQR 69 QA E+++ Sbjct: 168 QAQWEKEK 175 >UniRef50_A0RMM0 Transcriptional regulators, TraR/DksA family n=9 Tax=Campylobacterales RepID=A0RMM0_CAMFF Length = 122 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 2 SDEADEAYSVTEQLTMTGI-NRIRQKINAHGIP--------VYLCEACGNPIPEARRKIF 52 SDE D A + + I + R ++N +C+ C + I R K+ Sbjct: 40 SDEFDFASINADAILEHSISAKQRSELNEIDESLKKIANRTYGICDMCEDEIDIERLKVK 99 Query: 53 PGVTLCVECQAYQERQRKH 71 P C+ C+ E+ K+ Sbjct: 100 PNAKYCITCREIIEKNNKN 118 >UniRef50_UPI0001AEC064 DnaK suppressor protein n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC064 Length = 140 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 9/79 (11%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGI---------PVYLCEACGNPIPEARRKIFP 53 DE D A E I +K+ C G PI R I P Sbjct: 57 DEVDRAQYEEESRLSLRILDRERKLLPKIDKSLRRIKDKSFGYCLETGEPIGIPRLLIRP 116 Query: 54 GVTLCVECQAYQERQRKHY 72 C + + E + +HY Sbjct: 117 VSEYCADVKMVNEGREQHY 135 >UniRef50_B4UII3 Transcriptional regulator, TraR/DksA family n=4 Tax=Anaeromyxobacter RepID=B4UII3_ANASK Length = 144 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 11 VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQR 69 ++ + I+ +I+A +C C I R P LC EC +ER + Sbjct: 78 ENQRRELVQIDAAIARIDAGEYG--ICRDCEQDIDPRRLAALPYAVLCTECAQRRERAQ 134 >UniRef50_D1SGF0 Transcriptional regulator, TraR/DksA family n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SGF0_9ACTO Length = 103 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 11 VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQ 65 T + + + ++++ V CE CG IP AR +I P CV CQ + Sbjct: 51 ETARQGVADTAQALKRMSEGTYGV--CERCGQDIPTARLEILPSARFCVPCQQRR 103 >UniRef50_A0LMB8 Transcriptional regulator, TraR/DksA family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LMB8_SYNFM Length = 122 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 9/77 (11%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAH---------GIPVYLCEACGNPIPEARRKIFP 53 DE D TEQ + ++ +++ +CE CG I R K P Sbjct: 42 DEVDRTSIRTEQEFLLHMHCRNERLVQEILNGLQRIRTGDFGVCEECGKDIELNRLKAHP 101 Query: 54 GVTLCVECQAYQERQRK 70 T C++C+ ER+ + Sbjct: 102 SATQCIKCKKAAERKAR 118 >UniRef50_A4G7K6 Putative uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G7K6_HERAR Length = 106 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 + D+A E + + I ++I+ H + C CG I AR + P C +C Sbjct: 40 PTDVDDAMIKMELVELADIEAAHRRIDNHQYGL--CIDCGCTIDYARLQASPTAKRCTQC 97 Query: 62 QAYQERQ 68 Q E++ Sbjct: 98 QRLHEQR 104 >UniRef50_Q2YD37 Transcriptional regulators, TraR/DksA family n=2 Tax=Nitrosomonadaceae RepID=Q2YD37_NITMU Length = 131 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 8 AYSVTEQLTMTG-INRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 A V Q+ + +++ C CG I R ++P CV CQ E Sbjct: 63 ANLVDRQVNEMREVEAALKRLADLDYG--DCIDCGGEIGFDRLMVYPTAQRCVRCQEVHE 120 Query: 67 RQRKH 71 + H Sbjct: 121 KTYMH 125 >UniRef50_D1UB56 Transcriptional regulator, TraR/DksA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UB56_9DELT Length = 116 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 13/79 (16%) Query: 2 SDEADEAYSVTEQLTMTGINRIR-----------QKINAHGIPVYLCEACGNPIPEARRK 50 DE D A + +Q + R R +++ C+ CG+PI AR K Sbjct: 35 PDETDFATQLAQQGVNLAMQRRRMARIKEYECAIKRLRETDYGT--CDECGDPIGLARLK 92 Query: 51 IFPGVTLCVECQAYQERQR 69 P LC+ CQ+ E + Sbjct: 93 ANPSARLCIVCQSAAEEED 111 >UniRef50_C6HWS3 Transcriptional regulator, TraR/DksA family n=3 Tax=Leptospirillum RepID=C6HWS3_9BACT Length = 121 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 13/80 (16%) Query: 2 SDEADEAYSVT-----------EQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRK 50 D AD A E+ + I+ ++I +CE CG I E R Sbjct: 38 PDPADLASVEEIQGFSYRLKEREKKLLRKIDEALERIEEG--SFGICERCGEAIEEKRML 95 Query: 51 IFPGVTLCVECQAYQERQRK 70 P T C+ C+ E + Sbjct: 96 ARPVTTYCIACKTILEEAER 115 >UniRef50_Q2W8C2 Putative uncharacterized protein n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W8C2_MAGSA Length = 128 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D+ D A E + + ++ +C+ C +PI R + P C C Sbjct: 52 DDIDCAAERIEAFRDVALKAVLNRMTGPRSS-GICKTCYDPIEPQRIAVNPHARHCSFCA 110 Query: 63 AYQERQRKH 71 A +E+ ++ Sbjct: 111 AEEEQAQRQ 119 >UniRef50_B1J6V4 Transcriptional regulator, TraR/DksA family n=4 Tax=Pseudomonas RepID=B1J6V4_PSEPW Length = 143 Score = 52.2 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 11 VTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 E+ + I+ ++++ C+ G PI R + P TL +E + QER+ + Sbjct: 81 EREKKLLDKIDEALERLSRGEYG--WCKETGEPIGLRRLLLRPTATLSIEAKERQERRER 138 Query: 71 H 71 H Sbjct: 139 H 139 >UniRef50_C5EYJ0 DnaK suppressor protein n=4 Tax=Helicobacter RepID=C5EYJ0_9HELI Length = 119 Score = 52.2 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 M + D + I R +KI +CE C PI R K P C+ Sbjct: 49 MKNTLDGLIFEHHHKELEYIERALEKIENGEYG--ICEMCDEPISIQRLKAKPHARFCII 106 Query: 61 CQAYQERQRKHY 72 C+ E+ K Sbjct: 107 CREIVEKDLKGR 118 >UniRef50_UPI0001AEFD73 hypothetical protein SghaA1_01734 n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AEFD73 Length = 111 Score = 51.8 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 2 SDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVEC 61 +D+ + +T I+ +++ C+ CG IP R +I P CV C Sbjct: 49 ADDLLMMQKYAVRQALTDIDAAFTRLDEGTYGT--CQGCGRDIPVERLEILPYARCCVPC 106 Query: 62 QA 63 Q Sbjct: 107 QQ 108 >UniRef50_Q2SPX6 DnaK suppressor protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPX6_HAHCH Length = 78 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 3 DEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQ 62 D D+A + E+L + + R R C C + IP R++ GV+ CVEC+ Sbjct: 4 DILDQAAELQERLNASALARQRAGSALGQPSRAHCIDCEDAIPPLRQQ-LGGVSRCVECE 62 Query: 63 AYQERQRKH 71 Y + ++ Sbjct: 63 DYYQHAQRQ 71 >UniRef50_D1C0D4 Transcriptional regulator, TraR/DksA family n=2 Tax=Micrococcineae RepID=D1C0D4_XYLCX Length = 157 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 12 TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQ 68 + + ++I A CE G PI +AR + FP TL VE +A +ER+ Sbjct: 103 NMRDLLAQTKHAIERIKAGTYAT--CEMTGLPIGKARLQAFPRATLSVEAKAREERR 157 >UniRef50_Q1JWV8 Transcriptional regulators, TraR/DksA family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWV8_DESAC Length = 139 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 15 LTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKHYA 73 + IN +I C G I R +P L VE Q +E + + +A Sbjct: 79 RLLAQINAALLRIKEGSYG--YCVETGEEIGLRRLLAYPAAFLLVEVQEAREHRSRSFA 135 >UniRef50_P42408 Uncharacterized protein yteA n=2 Tax=Bacillus subtilis group RepID=YTEA_BACSU Length = 239 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTL 57 E D A + E+ + I + I +CE G IP R + P T Sbjct: 63 EKDIALDLHEREHLRDIEHSLKAIENGTYG--ICEVSGKEIPFERLEALPTATT 114 >UniRef50_D2B0C3 Transcriptional regulator, TraR/DksA family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0C3_STRRD Length = 110 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 7 EAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQE 66 A V+ + + + + + + C+ CG IP R K P C+ CQ E Sbjct: 51 LADIVSAERNLAVVRQALRDVTELTYGR--CDGCGLAIPFERLKARPLARFCMLCQRRHE 108 Query: 67 RQ 68 + Sbjct: 109 SR 110 >UniRef50_Q8ESP2 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP2_OCEIH Length = 224 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 2/57 (3%) Query: 4 EADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60 E D A + + IN I +C CG IP R + P CV+ Sbjct: 62 EKDIALQEHTEKELEDINAALHAIEEGTYG--ICTVCGEDIPHERLEAIPTTDRCVK 116 >UniRef50_A8V318 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V318_9AQUI Length = 133 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 19 GINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQER 67 I+ ++I+ CE CG PI E R + P TLC E E+ Sbjct: 52 KIDEALERISEGTYG--YCEVCGKPIEEERLEAIPWTTLCTEHAKEAEK 98 >UniRef50_B1ZV03 Transcriptional regulator, TraR/DksA family n=2 Tax=Opitutaceae RepID=B1ZV03_OPITP Length = 297 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 10/77 (12%) Query: 1 MSD------EADEAYSV--TEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIF 52 M+D + D A S+ +EQ +T I+ ++I+ +CE PI + R Sbjct: 195 MADAGTDTFDRDFALSLVSSEQEALTEIDAAIKRIHDGTYG--ICEITQKPIAKERLLAV 252 Query: 53 PGVTLCVECQAYQERQR 69 P E Q E+ R Sbjct: 253 PFTRYSAEAQKDLEKNR 269 >UniRef50_C9R760 Putative uncharacterized protein n=1 Tax=Aggregatibacter actinomycetemcomitans D11S-1 RepID=C9R760_AGGAD Length = 72 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 1 MSDEADEAYSVTEQLTM--TGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLC 58 M+D D+ E + Q+ C CG I +R K P C Sbjct: 1 MNDIVDKTQQRQEIMWANWRKQQVSAQQFAVAMNTARYCIDCGVLIHPSRVKAMPHCVRC 60 Query: 59 VECQAYQERQRK 70 + CQ E +K Sbjct: 61 ISCQQLHEESQK 72 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.149 0.563 Lambda K H 0.267 0.0470 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 498,232,359 Number of Sequences: 3077464 Number of extensions: 16641367 Number of successful extensions: 69769 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 694 Number of HSP's successfully gapped in prelim test: 131 Number of HSP's that attempted gapping in prelim test: 68851 Number of HSP's gapped (non-prelim): 843 length of query: 73 length of database: 1,040,396,356 effective HSP length: 44 effective length of query: 29 effective length of database: 904,987,940 effective search space: 26244650260 effective search space used: 26244650260 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 88 (38.3 bits)