BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (441 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 799 0.0 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 793 0.0 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 744 0.0 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 531 e-149 UniRef50_Q6ARB9 Probable two-component system response regulator... 426 e-118 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 405 e-111 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 404 e-111 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 402 e-110 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 394 e-108 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 394 e-108 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 393 e-108 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 393 e-108 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 391 e-107 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 390 e-107 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 389 e-107 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 388 e-106 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 387 e-106 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 387 e-106 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 385 e-105 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 384 e-105 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 384 e-105 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 381 e-104 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 380 e-104 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 379 e-104 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 379 e-104 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 379 e-104 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 379 e-103 UniRef50_Q39U11 Two component, sigma54 specific, transcriptional... 377 e-103 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 377 e-103 UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulato... 377 e-103 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 377 e-103 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 376 e-103 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 376 e-102 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 375 e-102 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 375 e-102 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 374 e-102 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 372 e-101 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 372 e-101 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 370 e-101 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 370 e-101 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 368 e-100 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 367 e-100 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 367 e-100 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 367 e-100 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 366 1e-99 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 366 1e-99 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 366 1e-99 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 365 1e-99 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 365 1e-99 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 365 2e-99 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 365 2e-99 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 365 2e-99 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 365 2e-99 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 364 3e-99 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 363 6e-99 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 363 8e-99 UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulato... 362 1e-98 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 362 2e-98 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 362 2e-98 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 362 2e-98 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 362 2e-98 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 361 2e-98 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 361 2e-98 UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Se... 361 2e-98 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 361 3e-98 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 361 3e-98 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 361 4e-98 UniRef50_D2R521 Two component, sigma54 specific, transcriptional... 361 4e-98 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 360 6e-98 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 360 6e-98 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 359 1e-97 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 359 1e-97 UniRef50_C7LX78 Two component, sigma54 specific, transcriptional... 359 1e-97 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 359 1e-97 UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobac... 358 3e-97 UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-... 358 3e-97 UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=... 357 5e-97 UniRef50_A0LM32 Two component, sigma54 specific, transcriptional... 357 6e-97 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 357 6e-97 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 356 8e-97 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 356 1e-96 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 355 2e-96 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 355 2e-96 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 355 2e-96 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 354 4e-96 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 353 7e-96 UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulato... 353 7e-96 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 353 8e-96 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 353 8e-96 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 353 1e-95 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 352 1e-95 UniRef50_Q2INT5 Two component, sigma54 specific, transcriptional... 352 1e-95 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 352 2e-95 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 352 2e-95 UniRef50_C1SMF5 Response regulator with CheY-like receiver, AAA-... 351 4e-95 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 350 5e-95 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 350 6e-95 UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thio... 349 9e-95 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 349 1e-94 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 349 1e-94 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 348 2e-94 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 348 2e-94 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 348 2e-94 UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional... 347 3e-94 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 347 4e-94 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 347 5e-94 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 347 5e-94 UniRef50_C6BW44 Two component, sigma54 specific, transcriptional... 347 7e-94 UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional... 347 8e-94 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 346 9e-94 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 346 9e-94 UniRef50_C4XL32 NtrC family two-component response regulator n=4... 346 1e-93 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 345 2e-93 UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncul... 345 2e-93 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 345 2e-93 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 345 2e-93 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 345 2e-93 UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domain... 345 2e-93 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 345 2e-93 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 345 2e-93 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 345 3e-93 UniRef50_Q1IUH0 Two component, sigma54 specific, transcriptional... 345 3e-93 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 344 3e-93 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 343 5e-93 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 343 5e-93 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 343 5e-93 UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional... 343 5e-93 UniRef50_C5V657 Two component, sigma54 specific, transcriptional... 343 6e-93 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 343 6e-93 UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pi... 343 7e-93 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 343 9e-93 UniRef50_A9FLX9 Family membership n=6 Tax=Myxococcales RepID=A9F... 343 9e-93 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 343 9e-93 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 343 1e-92 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 343 1e-92 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 342 1e-92 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 342 2e-92 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 342 2e-92 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 342 2e-92 UniRef50_A7HD97 Two component, sigma54 specific, transcriptional... 342 2e-92 UniRef50_B8DNW7 Two component, sigma54 specific, transcriptional... 342 2e-92 UniRef50_UPI00016C54BB two component, sigma54 specific, transcri... 341 3e-92 UniRef50_D2QY56 Two component, sigma54 specific, transcriptional... 341 3e-92 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 341 4e-92 UniRef50_A2SE88 Two-component response regulator CbrB n=1 Tax=Me... 341 4e-92 UniRef50_Q11Y64 Two-component response regulator for zraP n=1 Ta... 340 5e-92 UniRef50_A7HCY5 Two component, sigma54 specific, transcriptional... 340 6e-92 UniRef50_D0LHR5 Two component, sigma54 specific, transcriptional... 340 7e-92 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 340 7e-92 UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacter... 340 7e-92 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 339 1e-91 UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opit... 339 1e-91 UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional... 339 1e-91 UniRef50_B3QKR1 Two component, sigma54 specific, transcriptional... 338 2e-91 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 338 2e-91 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 338 2e-91 UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional... 338 2e-91 UniRef50_A4CMC3 Two component, sigma54 specific, transcriptional... 338 3e-91 UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional... 338 3e-91 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 337 5e-91 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 337 5e-91 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 337 5e-91 UniRef50_B9XL82 Two component, sigma54 specific, transcriptional... 337 6e-91 UniRef50_A6KXD6 Two-component system response regulator n=40 Tax... 337 7e-91 UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional... 337 7e-91 UniRef50_B4D072 Two component, sigma54 specific, transcriptional... 336 8e-91 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 336 9e-91 UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verru... 336 9e-91 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 336 9e-91 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 336 1e-90 UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional... 336 1e-90 UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-... 335 1e-90 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 335 2e-90 UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional... 335 2e-90 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 335 3e-90 UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional... 335 3e-90 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 335 3e-90 UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulato... 334 3e-90 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 334 4e-90 UniRef50_A6C862 Nitrogen regulation protein NR(I) n=2 Tax=Planct... 334 4e-90 UniRef50_A9GME2 Sigma-54 dependent DNA-binding response regulato... 333 5e-90 UniRef50_C0QK65 Two-component sensory box histidine kinase/respo... 333 7e-90 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 332 1e-89 UniRef50_D2QH48 Two component, sigma54 specific, transcriptional... 332 2e-89 UniRef50_Q1Q480 Putative uncharacterized protein n=1 Tax=Candida... 332 2e-89 UniRef50_Q1DD46 Sigma-54 dependent DNA-binding reponse regulator... 332 2e-89 UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional... 332 2e-89 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 332 2e-89 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 332 2e-89 UniRef50_B8IB91 Two component, sigma54 specific, transcriptional... 331 3e-89 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 331 3e-89 UniRef50_D2EVL6 Putative uncharacterized protein n=3 Tax=Bactero... 331 3e-89 UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional... 331 4e-89 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 330 5e-89 UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional... 330 6e-89 UniRef50_A3HS27 RteB, two-component system response regulator n=... 330 7e-89 UniRef50_Q47CW5 Helix-turn-helix, Fis-type n=3 Tax=Proteobacteri... 330 8e-89 UniRef50_Q6MI19 Probable transcriptional regulatory protein zraR... 329 1e-88 UniRef50_A3HZT3 Putative two-component response regulator transc... 329 1e-88 UniRef50_D2MI41 Transcriptional regulatory protein ZraR n=1 Tax=... 329 1e-88 UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional... 329 2e-88 UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional... 328 2e-88 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 328 2e-88 UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional... 328 2e-88 UniRef50_A1WBW7 Two component, sigma54 specific, transcriptional... 328 3e-88 UniRef50_D2R4P1 Two component, sigma54 specific, transcriptional... 328 3e-88 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 328 3e-88 UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional... 327 4e-88 UniRef50_B4CU93 Two component, sigma54 specific, transcriptional... 327 5e-88 UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional... 327 5e-88 UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional... 327 5e-88 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 327 5e-88 UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, N... 327 5e-88 UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desu... 327 7e-88 UniRef50_C9XR17 Two-component response regulator n=5 Tax=Clostri... 326 9e-88 UniRef50_A0LL20 Two component, sigma54 specific, transcriptional... 326 9e-88 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 326 9e-88 UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio... 326 1e-87 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 325 2e-87 UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 T... 325 2e-87 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 325 2e-87 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 325 2e-87 UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator ... 325 2e-87 UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional... 325 2e-87 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 325 3e-87 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 324 3e-87 UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptiona... 324 4e-87 UniRef50_B4D4B5 Two component, sigma54 specific, transcriptional... 324 4e-87 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 324 5e-87 UniRef50_D2UGQ5 Probable two-component regulatory system regulat... 323 6e-87 UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteob... 323 6e-87 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 323 6e-87 UniRef50_A5W971 Two-component response regulator CbrB n=10 Tax=P... 323 7e-87 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 323 7e-87 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 323 9e-87 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 323 9e-87 UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulato... 323 1e-86 UniRef50_Q1IMW7 Two component, sigma54 specific, transcriptional... 323 1e-86 UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax... 323 1e-86 UniRef50_C6W7H2 Two component, sigma54 specific, transcriptional... 322 1e-86 UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=A... 322 2e-86 UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulato... 322 2e-86 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 322 2e-86 UniRef50_A3EPR9 Putative two component, sigma54 specific, transc... 322 2e-86 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 322 2e-86 UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional... 322 2e-86 UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulato... 321 3e-86 UniRef50_Q2IK30 Two component, sigma54 specific, transcriptional... 321 3e-86 UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional... 321 3e-86 UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n... 321 3e-86 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/441 (88%), Positives = 413/441 (93%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M IDILVVDDD+SHCTILQALLRGWGYNVALA SG AL QVRE+VFDLVLCDVRMA Sbjct: 1 MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMA 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGIATLKEIKALNPAIP+LIMTA+SSVETAVEALK GALDYLIKPLDFD LQ TLEKA Sbjct: 61 EMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 LAHT AE P+ +A+QFGM+G SPAMQHLL+EIA+VAPS+ATVLIHGDSGTGKELVAR Sbjct: 121 LAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+HA SARS+KPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD Sbjct: 181 ALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGDISP+MQVRLLRAIQEREVQRVGSNQ ISVDV LIAATHRDLA EV+AGRFRQDLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVVAIE+PSLRQRREDIPLLA HFL+RFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE Sbjct: 301 RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 LENA+ERAVVLLTGEYISERELPLAIA+TPI S +IQPLV+VEKEVILAALEKTGGN Sbjct: 361 LENAIERAVVLLTGEYISERELPLAIAATPIKAENSAEIQPLVDVEKEVILAALEKTGGN 420 Query: 421 KTEAARQLGITRKTLLAKLSR 441 KTEAARQLGITRKTLLAKLSR Sbjct: 421 KTEAARQLGITRKTLLAKLSR 441 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/441 (88%), Positives = 410/441 (92%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT + IDILVVDDD+SHCTILQALLRGWGYNVALA SGR+ALE+ VFDLVLCDVRMA Sbjct: 1 MTGEKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEKASGHVFDLVLCDVRMA 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGI TL+EIKALNPAIPVLIMTA+SSVETAVEALKTGALDYLIKPLDFD LQ TLEK+ Sbjct: 61 EMDGIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLEKS 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 LAH + E P+V+ASQ GMVGKSPAMQ LLSEIA+VAPS+ATVLIHGDSGTGKELVAR Sbjct: 121 LAHAQEVAGELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+HASSARS+KPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD Sbjct: 181 ALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGDISP+MQVRLLRAIQEREVQRVGSNQ +SVDVRLIAATHRDLA E +AGRFRQDLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV IE PSLRQRREDIPLLA HFLQRFA RNRKAVKGFTPQAMDLLIHY WPGNIRE Sbjct: 301 RLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIRE 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 LENA+ERAVVLLTGEYISERELPLAIA+ +PL +Q IQPLVEVEKEVILAALEKTGGN Sbjct: 361 LENAIERAVVLLTGEYISERELPLAIANQAMPLMPAQAIQPLVEVEKEVILAALEKTGGN 420 Query: 421 KTEAARQLGITRKTLLAKLSR 441 KTEAARQLGITRKTLLAKLSR Sbjct: 421 KTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/444 (83%), Positives = 400/444 (90%), Gaps = 4/444 (0%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + +DILVVDDDISHCTILQALLRGWGY VALAN+G QALE+VRE+VFDLVLCD+RMA Sbjct: 1 MSGEQVDILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMA 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGI TLKEIK NP+IPVLIMTAYSSV+TAVEALK+GALDYLIKPLDFD LQ TL +A Sbjct: 61 EMDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEA 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 LAHT ++ A+QFGMVG SPAM+ LL+ I LVAPS+ATVLIHG+SGTGKELVAR Sbjct: 121 LAHTRLSESPVTETPAAQFGMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+HASSARS +PLV LNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD Sbjct: 181 ALHASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGDISP+MQVRLLRAIQEREVQRVGSNQ +SVDVRLIAATHRDLA EV+AGRFRQDLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV I++P LR RREDIP LA +FLQR+AERNRKAV+GFTPQAMDLLIHY WPGNIRE Sbjct: 301 RLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRE 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPI---PLGQSQDIQPLVEVEKEVILAALEKT 417 LENAVERAVVLLTGEYISERELPLAI TP+ P G IQPLVEVEKE ILAALE+T Sbjct: 361 LENAVERAVVLLTGEYISERELPLAITGTPVADAPHGDDS-IQPLVEVEKEAILAALERT 419 Query: 418 GGNKTEAARQLGITRKTLLAKLSR 441 GGNKTEAAR+LGITRKTLLAKLSR Sbjct: 420 GGNKTEAARRLGITRKTLLAKLSR 443 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 273/457 (59%), Positives = 337/457 (73%), Gaps = 24/457 (5%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ++LVVDDD H ++L+ +L GWGY V A G +A+E VR + FD VL DVRMA M G+ Sbjct: 4 ELLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRPFDAVLLDVRMAGMGGME 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH- 125 L IK NPA+PVLIMTAYSSVETAV ALK+GA DYL KPLD D ++ T+E+AL H Sbjct: 64 ALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDHLRL 123 Query: 126 SIDAET------PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + + E P V + ++GKSPAM+ L S IA+VAP+EATVL+ G+SGTGKELVA Sbjct: 124 ARENENLRQKLGPGVVGPE--IIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 +A+HA S R+ P+V +NCAALNE+LLESELFGHEKGAFTGA++RREGRF+ AD G++FL Sbjct: 182 KALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFL 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG+I+P +Q +LLR IQERE+QRVG ++ + VDVR++AAT+RDL EV AGRFR+DLY Sbjct: 242 DEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLY 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVVAI VP LR+R +DIPLLA HFL RFAE+NRK +KGFTP AMD L+ WPGN+R Sbjct: 302 YRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGNVR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLA----------IASTPIPLGQSQDIQPLV-----E 404 ELENAVERAV+L GEY++ERELPL+ D+ L + Sbjct: 362 ELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMALDD 421 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 VE+EVILA L TGGNK+EAAR LGITR TL KL + Sbjct: 422 VEREVILATLRDTGGNKSEAARVLGITRATLHKKLKK 458 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust. Identities = 220/435 (50%), Positives = 300/435 (68%), Gaps = 4/435 (0%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDDD H T+L+ L GY V A G + L ++ + DL+L D++M +DG+AT Sbjct: 4 ILLVDDDKGHRTMLKVNLGELGYQVITAGDGDEVLAKLTKNKIDLILLDMKMPRIDGLAT 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS- 126 L + N IPV+++TA+SS+E A+EA+K GA DY+ KP+D DNL + KAL S Sbjct: 64 LSLLSQQNNRIPVIVITAFSSMENAIEAMKKGAFDYVTKPVDIDNLHIAISKALHQKISP 123 Query: 127 -IDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 + T S+F ++G+S MQ L S+I+L+APS+AT+L+ G+SGTGKELVA AIH Sbjct: 124 PLSPGTEPQADSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAIHR 183 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 S R E L+ +NCAAL+E+LLESELFGHE GAFTGA K+++G F AD GTLFLDEIGD Sbjct: 184 HSKRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDEIGD 243 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 +S QV++LR +QE E +RVG N I V+VR+IAA+HR+L + G FRQDL++RL+V Sbjct: 244 MSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLSV 303 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 V + +P+LR+R DIP+LA FL + ++NRK +KGF+ +A+DLL+ Y WPGNIRELEN+ Sbjct: 304 VPLHLPALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIRELENS 363 Query: 365 VERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEA 424 +ER V+L GE I+ ELP P G+ L +VEK I AL ++G NK+ Sbjct: 364 IERGVILCLGEQITAHELPPQFFRNRSP-GELSSRDTLRDVEKRAIQQALARSGFNKSAT 422 Query: 425 ARQLGITRKTLLAKL 439 A+QLGI R+TLL K+ Sbjct: 423 AKQLGIARQTLLNKI 437 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 215/447 (48%), Positives = 291/447 (65%), Gaps = 17/447 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD+ S C L+ +L GY+V A SGR+ALE+V VL D+RM EMDGI Sbjct: 5 VLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEMDGIKV 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ ++ +P +PV++MTAYS +T + A++ GA +Y++KP++ D L +TLEKA T + Sbjct: 65 LQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATTVTEPL 124 Query: 128 DAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 A + G ++G SPAMQ + I +A S+ TVLI G+SGTGKELVA AIH +S Sbjct: 125 VTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNS 184 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 R KP V ++C A+ E+LLESELFGHEKGAFTGA R+ G+F ADGGT+FLDEIGDIS Sbjct: 185 PRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDIS 244 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 P +Q +LLR +QE+ +RVG + VDVR+IAAT++DL V +G FR+DLYYRLNVV Sbjct: 245 PALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVE 304 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 I++P LR+R+EDI LL +F+ + K V G T D+L+ Y+WPGN+REL N E Sbjct: 305 IKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCE 364 Query: 367 RAVVLLTGEYISERELPLAI---------ASTPIPLGQSQDIQPL----VEVEKEVILAA 413 RAV++ G I+ LP + A P + + + PL E+E+ IL A Sbjct: 365 RAVLMARGNVITPESLPEYLLRAVRGRTEAWHP---AEDRGVLPLKEMVAEMERSAILRA 421 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLS 440 LE+ GNKT AR LG++R TL AK+ Sbjct: 422 LEEYRGNKTAVARALGMSRTTLYAKMK 448 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 216/447 (48%), Positives = 295/447 (65%), Gaps = 17/447 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ + +L G+ AN+GR AL + D+VL D+RM EMDGI Sbjct: 7 ILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKA 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LKE+++ PV++MTAY+ VETAVEAL+ GA DY+IKP D D L +++AL S+ Sbjct: 67 LKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRAL-QLQSM 125 Query: 128 DAETPAV-----TASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 E + T+ Q+G ++ SPAM + + A +A S+A+VLI G+SGTGKEL+ARA Sbjct: 126 KKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARA 185 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R++ P + +NCAAL ESLLESELFGHEKGAFTGA R+G F A+ GTL LDE Sbjct: 186 IHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDE 245 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ ++Q +LLR +QERE +R+G +Q I VD+R+IAAT+RDL A V G FR+DL+YR Sbjct: 246 IGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYR 305 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV+ + +P LR RREDI LLA HFLQ+F+ N++ + P AM LL + WPGNIREL Sbjct: 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIREL 365 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPI---------PLGQSQDIQPLVEVEKEVILA 412 N +ERAVV+ +G I +LP I P+ P+G+ + + VEK +I+ Sbjct: 366 SNVIERAVVMNSGPIIFSEDLPPQI-RQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIME 424 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKL 439 LE+ GN+T A LGI+R+ L+ KL Sbjct: 425 VLEQQEGNRTRTALMLGISRRALMYKL 451 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 217/443 (48%), Positives = 297/443 (67%), Gaps = 13/443 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+ + + +L GY VA A +G +AL ++ E +VL DVRM +MDG+ Sbjct: 6 ILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMPQMDGLTL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK + ++MTA++SVETAVEA+K+GA ++L+KPLD D + TL K L S+ Sbjct: 66 LKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKVL-EKRSL 124 Query: 128 DAETPAVT------ASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 E A+ +F ++G+SP +Q + I A + ATVLI G+SGTGKEL+A+ Sbjct: 125 RQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTGKELIAQ 184 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H S R +KP + ++CAAL+E+LLESELFGHEKG+FTGA R+EGRF ADGGTLFLD Sbjct: 185 ALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALARKEGRFELADGGTLFLD 244 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG+ISP +QV+LLR +Q+RE +RVG Q + VDVR++AATHRDL AEV AGRFR+DLYY Sbjct: 245 EIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRFREDLYY 304 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV++ +P LR R+ D+P L HFL+++++ K V+G P + L+ +DWPGNIRE Sbjct: 305 RLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPGTLQALLSHDWPGNIRE 364 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI----QPLVEVEKEVILAALEK 416 LENA+ERAVVL G+ +S +LP + P P G S L +E+E IL LE Sbjct: 365 LENAIERAVVLAQGQELSTDDLP-PVLRGPRPHGTSTGALIPGATLAAIEREAILRTLEM 423 Query: 417 TGGNKTEAARQLGITRKTLLAKL 439 G+ + AA LGI+ + + +L Sbjct: 424 VQGSTSRAAEVLGISVRKIQYRL 446 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust. Identities = 220/450 (48%), Positives = 299/450 (66%), Gaps = 14/450 (3%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +++ILVV+D S +L+ L G+ V A SG +A++ + FDLVL D +M MDG Sbjct: 3 SLNILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMPGMDG 62 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L+E+K LNP V+I+TAY ++ETAV+A+K GA+DY+ KPL+FD L L++ +A Sbjct: 63 MQVLQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLDR-VAER 121 Query: 125 HSIDAETPAVT-------ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 ++ E + + ++ S M L S A VA S ATVL+ G+SGTGKEL Sbjct: 122 RTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKEL 181 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 +AR IH S RS +P++T+NC AL ESL+ESELFGHEKGAFTGA RR GRF EADGGTL Sbjct: 182 LARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGTL 241 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG+++ +QV+LLR +QERE QRVG N I DVR+I+AT+RDL V +FR+D Sbjct: 242 FLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFRED 301 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRLNVV + +P LR+RREDIP L HFL+RFA N K + G + +A DLL+ YD+PGN Sbjct: 302 LYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYPGN 361 Query: 358 IRELENAVERAVVLLTGEYISERELP-----LAIASTPIPLGQSQDIQPLVE-VEKEVIL 411 +RELEN +ERAVV+ E I +LP L S +P ++ +E +EK++I Sbjct: 362 VRELENIIERAVVIARNEIIYMEDLPFREDTLVATSGGVPEEGEGRLRGAIENLEKQMIQ 421 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 A+EK G ++T AA LG++ + L KL + Sbjct: 422 DAMEKAGDHQTRAAEMLGLSERMLRYKLKK 451 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust. Identities = 203/438 (46%), Positives = 286/438 (65%), Gaps = 9/438 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +IL +DD+IS + A+LR GY V + + + +E ++ + +L D R+ MDGI Sbjct: 3 NILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLPGMDGID 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+ +K +IP +++TAY ++E AVEA+K GA YLIKP+D + L +++A+ + Sbjct: 63 LLRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVIKEAIEKSKG 122 Query: 127 IDA----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 I ETP ++GKS +Q + + +VA S A VLI G+SGTGKELVARAI Sbjct: 123 IQKLEKIETPFPE-----IIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAI 177 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R KP + ++C + E+LLESELFGHEKGAFTGA +R+ G A+ GT+FLDEI Sbjct: 178 HKNSLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEI 237 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G++ ++Q +LLR +QE+E+QR+GS Q I VDVR+I+AT++DL + G FR+DLY+RL Sbjct: 238 GELPMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRL 297 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVV I +P LR+R+EDIPLL HFL +F++ N K + P+ M+ LI+Y WPGNIREL Sbjct: 298 NVVRINLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELA 357 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKT 422 N +ERAVVL IS + LP I ++ L+EVEK +IL AL TG N+T Sbjct: 358 NVIERAVVLSPSGLISIKHLPRRIQENTGWTIIKENTFNLLEVEKALILKALNSTGWNQT 417 Query: 423 EAARQLGITRKTLLAKLS 440 +AA LGI+RK L K+ Sbjct: 418 KAAEILGISRKQLRTKMK 435 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust. Identities = 201/442 (45%), Positives = 295/442 (66%), Gaps = 11/442 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD+ S L +L Y VA A +G Q +++ + D+++ D+RM E DG Sbjct: 6 VLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEKDGFGL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L++IK+ IPV++MTA+ + E A++A+K GA DY++KP D D +++A+A + ++ Sbjct: 66 LEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVAQSDTV 125 Query: 128 ----DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 A+ PA +++ ++G SP+M+++ +I VA S ATVLI G+SGTGKELVARAIH Sbjct: 126 ATFPQAQEPA-SSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARAIH 184 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 +S+R P + +NCA L +SLLESELFG+EKGAFTGA + GRF A GT+F DEIG Sbjct: 185 YNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDEIG 244 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 +IS Q +LLRAIQE+E RVG + I V+VR++AAT+R L V G FR+DL++RLN Sbjct: 245 EISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFRLN 304 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV IE+P LR R+EDIPLL HFL ++ + K +KGF+ +A+ LLI YDWPGN+RELEN Sbjct: 305 VVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVRELEN 364 Query: 364 AVERAVVLLTGEYISERELPLAIASTPIP-----LGQSQDIQPLV-EVEKEVILAALEKT 417 VER++++ G I ++ L + P L ++ ++ ++ +VE++VIL ALE+ Sbjct: 365 VVERSIIMARGAIIVPEDIQLGATVSQQPTELEILDENLSLKQIISDVERKVILKALEEN 424 Query: 418 GGNKTEAARQLGITRKTLLAKL 439 +T A+ L I R++L AK+ Sbjct: 425 NWCRTTVAKVLKINRRSLYAKM 446 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust. Identities = 207/452 (45%), Positives = 297/452 (65%), Gaps = 20/452 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LV+DD+ + +L A+LR G++V +A +G Q L + + D+V+ D+ M ++ G+ Sbjct: 4 VLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGMEV 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L I+A NP +PV+I+TA+ +V++AV+A+K GA DY+ KP D L + + KA S Sbjct: 64 LGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAAKTNESA 123 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 ++ ++G S +Q + I VA + +TVLI G+SGTGKEL+A A+H +S+ Sbjct: 124 RRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGASS 183 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 R +KP + +NCAA+ +LLESELFG+E+GAFTGA + GRF AD GTLFLDEIG+I Sbjct: 184 RRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEIPV 243 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 MQV+LLRAIQE E +RVG + VDVRL+AAT+RDL AE+ AGRFR+DLYYRL VV I Sbjct: 244 EMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVVPI 303 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 +P+LR+RR D+P+LA HF++++ R K ++G AM LL Y WPGNIRELEN +ER Sbjct: 304 SLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELENLIER 363 Query: 368 AVVLLTGEYISERELP----------------LAIASTPIPLGQS--QDIQPL--VEVEK 407 ++ G I+ R+LP A+AS +P G+ +DI + E+E+ Sbjct: 364 VLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAELER 423 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 ++I+ LE+TGGN T AAR L I+RK+L K+ Sbjct: 424 DLIVKKLEETGGNVTRAARLLQISRKSLQTKM 455 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 212/440 (48%), Positives = 283/440 (64%), Gaps = 6/440 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD++S L R GY V + S +AL +V EQ +DL L D++M DG+ Sbjct: 8 LLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAEQTYDLALLDIKMRGTDGVEL 67 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS- 126 +++ L P + V++MT Y+SVETAV L+ GA DY+ KPLD + + KALAH + Sbjct: 68 QRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDPEETAHLVSKALAHKRTE 127 Query: 127 ---IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + + + +V +S AM+ + I VAP++ATVLI G+SGTGKE+VARAIH Sbjct: 128 QENVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKEVVARAIH 187 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 A S R P+V ++C AL E+LLESELFGHEKGAFTGA R++G+F A+GGT+FLDEIG Sbjct: 188 ALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGTVFLDEIG 247 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 DIS Q LLR +QERE+ RVG NQ I VD R++AAT++DL + G FR DL+YRLN Sbjct: 248 DISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRPDLFYRLN 307 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 V IE+P LR RREDIPLL HF ++FAE+ K V AM++L Y WPGN+RELEN Sbjct: 308 VFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPGNVRELEN 367 Query: 364 AVERAVVLLTGEYISERELPLAI--ASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNK 421 AVERA+V+ + E + L + A+T + + L ++EKE IL L++T N+ Sbjct: 368 AVERAMVVAQEPELRETDFVLKVKAAATMSSTNGTGTPKTLEDIEKEHILHVLDETNWNQ 427 Query: 422 TEAARQLGITRKTLLAKLSR 441 T AA L I R TL K+ R Sbjct: 428 TRAAEMLDIDRVTLHHKIKR 447 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust. Identities = 201/440 (45%), Positives = 293/440 (66%), Gaps = 10/440 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL++DD+ + +L A L GY V A GR L ++E +D+++ D+++ ++ G+ Sbjct: 7 ILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLITDLKLPDITGLDI 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+++KA P +PV+++TAY S+ AV+A+K GA +YL KP+D D L ++ + + Sbjct: 67 LEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNVFERSQLL 126 Query: 128 DAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + S MVGKS AMQ L + I VA EA VL+ G++GTGKELVAR I Sbjct: 127 EENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGKELVARGI 186 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H + P V ++CAA+ E+LLESELFGH +GAFTGA ++++G+ A GGTLFLDEI Sbjct: 187 HYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGGTLFLDEI 246 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G++ +Q + LR +QE+E+ R+G + VDVR+IAAT+RDL AE+ AG++R+DL+YRL Sbjct: 247 GELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWREDLFYRL 306 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV++IE+P LR+RR+DIP L HFL ++ +N KA++G T + M++ + YDWPGN+RELE Sbjct: 307 NVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWPGNVRELE 366 Query: 363 NAVERAVVLLTGEYISERELP--LAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 N +ERAVVL G+ I+ LP L S P P S D L+E+EK +I+ LEKT N Sbjct: 367 NVIERAVVLCMGDSIAMSCLPPKLQERSAPAP---STDGVNLMEMEKRLIVQTLEKTEQN 423 Query: 421 KTEAARQLGITRKTLLAKLS 440 ++ AAR+LGI+RK L K+ Sbjct: 424 QSAAARELGISRKQLRTKMK 443 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust. Identities = 201/451 (44%), Positives = 293/451 (64%), Gaps = 22/451 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 I+VVDDD L L+ GY+V +G+QA+ ++ ++ FD++ D++M MDG+ Sbjct: 6 IMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMPGMDGMEA 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+++K ++ V++MTAY ++E+AVEA++ GA DY+IKP D ++ + + I Sbjct: 66 LEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRVNERQKLI 125 Query: 128 DAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 +AS + K+ M + ++ +A S+A+VLI G+SGTGKELVARAI Sbjct: 126 AENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGKELVARAI 185 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R EKP + +NCAAL ESLLESELFGHE+GA+TGA +R GRF A+ GTL LDE+ Sbjct: 186 HYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEGTLLLDEV 245 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 +ISP +Q +LLR ++E E +RVG + I +DVR++A T+RDLA E+ G FR+DL+YRL Sbjct: 246 SEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFREDLFYRL 305 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVV I +P LR+RREDIPLLA +L++++ N +VK +AMD L Y+WPGN+REL+ Sbjct: 306 NVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWPGNVRELK 365 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ------------DIQPLVEVEKEVI 410 N ++RAVV+ + E EL L ++ I + +S+ + Q + + EKE+I Sbjct: 366 NIMQRAVVMGSSE-----ELGLENFTSLIDIKKSEHTMCNDSVNIKKNGQSIEDAEKELI 420 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 LEKTGGNKT+AA L IT +TL KL++ Sbjct: 421 FTTLEKTGGNKTKAAGLLKITTRTLRNKLNK 451 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 210/442 (47%), Positives = 288/442 (65%), Gaps = 10/442 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+ + L+ +L GY +A A G +AL + VL DVRM MDGI Sbjct: 15 ILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAVLADVRMPRMDGINL 74 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA----H 123 L+ + ++MTA++SVE AVEA++ GA +YL+KPLD + + LEKAL Sbjct: 75 LRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPLDVNAVLVVLEKALEKLRLQ 134 Query: 124 THSIDAETPAVTASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + + +F +VG +P + + + AP+ ATVLI G+SGTGKEL A+A+ Sbjct: 135 RDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFAQAL 194 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R++K + +NCAAL+E+LLESELFGHEKGAFTGA R+EGRF ADGGTLFLDEI Sbjct: 195 HEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFLDEI 254 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GDISP +Q++LLR +Q+RE +RVG Q + VDVRL+AAT+RDLAAEV GRFR+DLYYRL Sbjct: 255 GDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLYYRL 314 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVVA+ +P LRQR+ DIP L HF+ ++++ K ++G P ++ ++ +DWPGN+RELE Sbjct: 315 NVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNAVLSHDWPGNVRELE 374 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI----QPLVEVEKEVILAALEKTG 418 N VERAVVL G ++ +LP + P P ++ L E+E+E IL LE G Sbjct: 375 NVVERAVVLCKGSELTADDLPPTLRG-PRPRERAPGALIPGATLYEIEREAILRTLEMVG 433 Query: 419 GNKTEAARQLGITRKTLLAKLS 440 G+ + AA LGI+ + + +L Sbjct: 434 GSTSRAAEILGISVRKIQYRLK 455 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 208/443 (46%), Positives = 288/443 (65%), Gaps = 15/443 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILV+DD+ C L+ L GY V + G+ L+ +R++ LV+ D++M EMDG+ Sbjct: 7 ILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGLEV 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L + K L P +P++++TA+ +++TA+EA+K GA DY+ KP D D L+ + +AL H Sbjct: 67 LVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVNHLQ 126 Query: 128 DAET--PAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 + T + ++G +VG S A+ + I VA S ATVL+ G+SGTGKE+ A +IH Sbjct: 127 EEVTFLRSELNKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIHQ 186 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 S+R +KP V +NCAAL ESLLESELFGHEKGAFTGA R+ GRF A+ GTLFLDEI + Sbjct: 187 LSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEITE 246 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + MQV+LLR +QE+E +RVG I +DVR+IAAT+RD + G FR+DL+YRLNV Sbjct: 247 MPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLNV 306 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 + I +P LR+R EDIPLLA HF+++F N + +P+AM LLI Y+WPGNIREL+N Sbjct: 307 LPIHLPPLRERTEDIPLLAMHFIKKF---NPSQEQRMSPEAMGLLISYEWPGNIRELQNV 363 Query: 365 VERAVVLLTGEYISERELPLAI---------ASTPIPLGQSQDIQPLVEVEKEVILAALE 415 +ER+++L G I LP I + + + D EVEKE+IL ALE Sbjct: 364 IERSIILAQGNEIKPHHLPKEIQKLDEVKNETTHGLIINFPDDGISFDEVEKELILKALE 423 Query: 416 KTGGNKTEAARQLGITRKTLLAK 438 K+ GN+T AA+ LGITR LL + Sbjct: 424 KSNGNQTRAAQLLGITRSALLYR 446 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 206/458 (44%), Positives = 296/458 (64%), Gaps = 19/458 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 +T N IL+ +DD + + L LL GY + ++GR+A++ E ++LV+ D++M Sbjct: 10 VTMKNQKILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVEDKYELVITDLKMP 69 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 DG+ LK +K +NP V++MT Y +V++AVEA+K GA DY+ KP+ D + T+ +A Sbjct: 70 NGDGLELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMRNDLVTLTVNRA 129 Query: 121 LAHTHSIDAETPAV-----TASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 L++ S+ E + FG M+G S M+ + I VA S++TV+I+G+SGTG Sbjct: 130 LSYA-SLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTG 188 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KELVARAIH +S R+ PL+ +NC A+ E LLESELFGHEKGAFTGA + R GRF A G Sbjct: 189 KELVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRNRLGRFELAQG 248 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 G++FLDEIGD+SP +QV++LR IQE++ +R+G + I+ DVR+IAATH++L V RF Sbjct: 249 GSIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRF 308 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DL+YR+NV+ I +P+LR+R DI +LA HFLQ+FA+ +K V FTP+A+ ++HY W Sbjct: 309 REDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAIACMLHYPW 368 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAI----------ASTPIPLGQSQDIQPLV- 403 PGN+RELEN +E VV+ I +LP I IP + D +V Sbjct: 369 PGNVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKKETQSFKEYQIP-EEGIDFNDVVY 427 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + EK ++L AL KT G K AA+ L + R TL+ KL R Sbjct: 428 QFEKNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLKR 465 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/445 (44%), Positives = 290/445 (65%), Gaps = 16/445 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL VDD+ C L +L WG+ V +A G AL + E D+VL D+ M E DG+ Sbjct: 6 ILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRKANEFRPDVVLSDLAMPETDGLWL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ +K P PV+ +T +++ AVE+++ GA D+++KPLD L+ +++AL ++ Sbjct: 66 LRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALEKKETM 125 Query: 128 -DAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + +T Q G ++ +S M+ ++ + VAPS+A+V I G+SGTGKE+V+RA+H Sbjct: 126 REVQTLRRRLKQLGSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSRAVH 185 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S R +KP + +NCA++ +L+ESELFGHE+GAFTGAD+RR G F A GGTLFLDE+G Sbjct: 186 NLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLFLDELG 245 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 +I +Q +LLR ++E +++R+G I VDVR++ AT+RDL E+ GRFR+DLY+RLN Sbjct: 246 EIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYFRLN 305 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 V I +P LR+RR+D+P+L HF+ +F + K V G P+AM++L +YDWPGNIREL N Sbjct: 306 VFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNIRELRN 365 Query: 364 AVERAVVLLTGEYISERELPLAIAS-TP------IPLGQSQDIQPLVEVEKEVILAALEK 416 AVERAV+L GE I+ LP +A +P +P G S D VE+E IL +L++ Sbjct: 366 AVERAVILCDGELITREHLPPDMAGKSPERHTFRLPFGLSLDA-----VEREYILGSLQR 420 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 G NK A LG++ KTL KL+R Sbjct: 421 NGNNKARTAEVLGVSEKTLYNKLNR 445 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/457 (44%), Positives = 296/457 (64%), Gaps = 22/457 (4%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 +++ +LV DD++S +LQ L GY V +G++AL +E +D+ + D+RM E+D Sbjct: 13 ESVRVLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIRMPEVD 72 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ EI + P +P+++MTA+ S ETAV A+K GA DY++KP + D ++ + +A+ Sbjct: 73 GLQAFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSRAI-R 131 Query: 124 THSIDAETPAVT--ASQFGM--------VGKSPAMQHLLSEIALVAPSEATVLIHGDSGT 173 + E +T + GM VG+S +Q + I VA S+ATVL+ G+SGT Sbjct: 132 MQQLTKEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVANSKATVLLTGESGT 191 Query: 174 GKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD 233 GK +VA+AIH +S R EKP + +NC ++ E LLESE+FGHEKGAFT A ++ G+F A+ Sbjct: 192 GKGMVAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQKPGKFELAE 251 Query: 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR 293 GGTLFLDEI ++SP +QV+LLR +QE+E +RVG + +VR+IAAT+RDL E++ Sbjct: 252 GGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDLNKEISEKS 311 Query: 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 FR+DLYYRLNVV+I +P L +R EDI LLA +FL+RF+ + F P+ +D+ +Y Sbjct: 312 FRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMFFAPEVLDIFRNYS 371 Query: 354 WPGNIRELENAVERAVVLLTGEYISERELPLAI------ASTPIPLGQSQDIQP----LV 403 WPGNIRELENAVE A+++ I LPL+I A I LG +P L+ Sbjct: 372 WPGNIRELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTIILGDDS-FKPLREVLL 430 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 EVEK I A+E+TGGN+T+AA+ L I+R+ LL K++ Sbjct: 431 EVEKRHISEAIERTGGNRTQAAKLLQISRRALLYKIN 467 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 205/455 (45%), Positives = 292/455 (64%), Gaps = 20/455 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M +N ILV DDD S TIL+ LL GY V++A G Q ++QV++ DL+L DVRM Sbjct: 1 MAENNRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATL--- 117 ++DGI LK+++A +P+++MTA+ + T ++A++ GA DY+ KP D D++ T+ Sbjct: 61 KIDGIEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINRF 120 Query: 118 --EKALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 ++ L+ AE ++G SP MQ + I LVA S+ATVLI G++GTGK Sbjct: 121 FEQQKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVA IH +S S+ PLV +NCAAL E+LLESELFGHEKG+FTGAD++R+GRF A G Sbjct: 181 ELVAETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDEIG+++ Q +LLR +QERE +RVG + I VD R+IAAT++ L EV AG+FR Sbjct: 241 TIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV+ I +P LR+R+EDIPLL +FLQ+ + +A+ +L+ +DWP Sbjct: 301 EDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE----------- 404 GN+RELEN +ERAV+L G I+ L + I G++ D+ +++ Sbjct: 361 GNVRELENTIERAVILAQGGVITTHHLVF----SQIRTGRNIDLSEVIDKTRSLDEAMRI 416 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 +E ++IL ALEK G+ AA L I+ L KL Sbjct: 417 IESKIILEALEKAKGDHALAAEILDISESELKRKL 451 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 205/445 (46%), Positives = 283/445 (63%), Gaps = 21/445 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL DD+ + I+ L GYNV SG++ ++ ++E+ +D+ + D+ M M+GI T Sbjct: 7 ILFTDDEGTFRNIMSKELDRMGYNVTCCASGQETIKNMQERDYDVAILDMNMPVMNGIET 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA----- 122 LK++K + P V+I+T S+E AV+A+K GA DYL KP L L++AL Sbjct: 67 LKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQLKELDLLLQRALEKRKLS 126 Query: 123 ----HTHSI--DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 H ++ D + P+ M+G SPA++ + I APS+ TVLI G+SGTGKE Sbjct: 127 RENFHLKTLVHDVQKPS------SMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L A+ IH S R++KP V +NCA L ESLLESELFGH KGAFTGA + R G F A+GGT Sbjct: 181 LAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIG+++ Q +LLR IQ E++RVG N++I+VD R+IAATH++L EV GRFR+ Sbjct: 241 LFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLY+RLNV+ + +PSLR+R++D+ L HFLQ+F + R P+A+ + YDWPG Sbjct: 301 DLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCKGER--TMDMHPEALHAMTLYDWPG 358 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAI-ASTPIPLGQSQDIQPLVEVEKEVILAALE 415 NIRELEN +ER VVL G IS ELP I T G++ +I L EVEK I+ L+ Sbjct: 359 NIRELENTIERTVVLADGNIISIEELPDNIRGRTYEHYGKNGEI-ALSEVEKNHIIQVLK 417 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 + +K AA+ LGI+ KTL K+ Sbjct: 418 EKNWHKPLAAKTLGISLKTLYNKMK 442 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/455 (43%), Positives = 293/455 (64%), Gaps = 22/455 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+I C L L+ + + A++G++A++ + D++L DV+M M+GI Sbjct: 6 ILIVDDEIHTCQGLARALK-YEWETFTASNGKEAIKIFEDNPVDIILTDVKMPGMNGIEL 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+++K + P P ++M+AY+ ET V+A+K GA D++ KP D+L L+ A+ + S Sbjct: 65 LRQLKNIRPETPAIVMSAYNETETVVDAVKAGAYDFITKPFRLDDLDGVLKTAVQASPSF 124 Query: 128 ---------DAETPAVTASQFG------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 A+ PA+ + G ++ +S AM+++L + +AP+ ++VLI G++G Sbjct: 125 QLPSTKKATSAQLPAIAQTAKGSKNSPQIIYQSVAMENVLRTVQQIAPARSSVLITGETG 184 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKE++A+AIHA+S RS+K + ++CAALN +L ESELFGHEKG+FTGA+++R GRF A Sbjct: 185 TGKEVIAKAIHAASTRSKKAFIAVHCAALNANLFESELFGHEKGSFTGANEKRIGRFEAA 244 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 DGGTLFLDEIG+I QV+LLR ++ R +RVG N+ + D RLIAAT+RDL V AG Sbjct: 245 DGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNETLYSDARLIAATNRDLRKMVQAG 304 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR+DLYYRL+V+ +E+P LR RREDIP L H+L N+ VKGFT AM L Y Sbjct: 305 EFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISSVTENQLNVKGFTADAMARLCTY 364 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ------PLVEVE 406 DWPGN+REL N VER VL EY+ LP + L ++ I+ + E E Sbjct: 365 DWPGNVRELRNVVERMAVLSQQEYLDLPNLPDHVLLGEQQLSETAKIEDKDKALDVAENE 424 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 K +IL AL+++ N+T AA +LG++R+TL +L + Sbjct: 425 KVLILKALKESNNNRTLAAERLGMSRRTLHRRLKQ 459 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust. Identities = 210/455 (46%), Positives = 295/455 (64%), Gaps = 25/455 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGW----GYNVALANSGRQALEQVREQVFDLVLCD 56 M + ILVVDD+ I++ L GW GY VA GR A+E+++ + + +++ D Sbjct: 1 MPTETTRILVVDDE----EIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMIVD 56 Query: 57 VRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQAT 116 ++M MDG+ L+ K L P + V+IMTAY++V+TAV A+K GA DYL+KP D + L Sbjct: 57 LKMPGMDGLQVLEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFDPEELSIM 116 Query: 117 LEKALAHTHSIDAETPAVTAS-----QF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGD 170 ++K ++ S+ E + + +F ++ KSPAMQ + A S +T+L+ G+ Sbjct: 117 MQKIVSQ-QSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGE 175 Query: 171 SGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV 230 SG+GKE++ARA+HA S R+ P V ++CAAL ESLLESELFGHEKG+FTGA RR+G+F Sbjct: 176 SGSGKEVLARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFE 235 Query: 231 EADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVN 290 A GGTLFLDE+GDI P +Q+ LLR ++ER RVG N+ I VDVR+IAAT+RDL + Sbjct: 236 AAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAH 295 Query: 291 AGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLI 350 G+FR+DL+YRLNV+ I VP LR+RREDIPLL +F++R + ++ ++G +P AM L+ Sbjct: 296 EGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALM 355 Query: 351 HYDWPGNIRELENAVERAVVLLTGEYI--SERELP--LAIASTPIPLGQSQDIQPLVEVE 406 +DWPGN+REL N +ER V+ TG I S+ LP L AS P L L EVE Sbjct: 356 AHDWPGNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEAASKPGTLAS------LEEVE 409 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 K + A L GN +++AR LGI R TL K+ + Sbjct: 410 KRHVAAVLAHANGNVSQSARILGIDRVTLYNKMRK 444 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust. Identities = 213/453 (47%), Positives = 296/453 (65%), Gaps = 17/453 (3%) Query: 3 HDNIDILVVDDDI-SHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 +D +L+++D+ + ++ AL G ++ A+ A+ + + D+VL D+R+ + Sbjct: 5 NDFPKLLIIEDEKRTRMGLVMAL--GEEFDTYEASDLSSAMAILENEPIDIVLADIRLGK 62 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 G L+++K+L L MTAY SVE AVEA+K GA DY+ KPLD + L+ TL K + Sbjct: 63 ESGFEILRKVKSLPFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITL-KRI 121 Query: 122 AHTHSIDAETPAVTAS---QFGM---VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + ++ E + ++G+ +G S AM+ + +I VA S+ATVL+ G+SGTGK Sbjct: 122 YQSRKVEVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGTGK 181 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVA AIH S R P V ++CAAL+ LLESELFGHEKGAFTGA +RR GRF EA G Sbjct: 182 ELVAHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAARG 241 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG+I QV+LLRA+ E+ +QRVGSN++++VDVR+IAAT+++L V G+FR Sbjct: 242 TLFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFR 301 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL++RLNVV I +P LR+R+EDIPLLA FL FA N K + +P+AM +L+ YDWP Sbjct: 302 EDLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYDWP 361 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIA------STPIPLGQSQ-DIQPLVEVEKE 408 GN+REL+ A+E VVL GE I R+LP I S PI + S+ D L E EK Sbjct: 362 GNVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFNLKEAEKR 421 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +IL AL G KT AA++LGI+RKTL K+ + Sbjct: 422 LILHALRVCQGKKTSAAKKLGISRKTLQRKIKQ 454 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust. Identities = 210/472 (44%), Positives = 296/472 (62%), Gaps = 33/472 (6%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M + ILVVDD+ + +L A L GY V A G + L ++E DLV+ D+RM Sbjct: 1 MLPEKKQILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++DG+ L+ +P+ PV+++TA+ +V+ AVEALKTGA DY+ KP D + ++ ++KA Sbjct: 61 KVDGMDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKA 120 Query: 121 LAH--------THSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 L T + A P + +FG++G+SP +Q L + + VA + TVLI G+SG Sbjct: 121 LRTRDLASADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTTVLISGESG 180 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKELVARA+H +S R ++P + +NCAA+ + L+ESELFG+E+GAFTGA + GRF A Sbjct: 181 TGKELVARALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGRFELA 240 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 GGTLFLDEIG+I MQV+LLR +QE E +RVG + I VDVRL+AAT+RDL E+ AG Sbjct: 241 SGGTLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIAAG 300 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR+DL+YRLNVV I +P+LR RR DIP L HF+ +F R +K+++ P+A++ L + Sbjct: 301 TFREDLFYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPEALERLASH 360 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAI------------------------AS 388 WPGNIRELEN VERA++ G I +LP I S Sbjct: 361 AWPGNIRELENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAAAAADTSAAPS 420 Query: 389 TPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 TP L + Q + ++E+++I AL++T GN T AAR L I+RK L K+ Sbjct: 421 TPDGL-KEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKMK 471 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/444 (45%), Positives = 289/444 (65%), Gaps = 13/444 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVV+D+ +++ L G++V A S + L+ V D+VL D+++ MDG Sbjct: 5 ILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDRA--DMVLTDLKLPNMDGQEF 62 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L I+ N +PV++MTA+ +VETAVEA+K GA D+L+KP D+L ++KAL ++ Sbjct: 63 LSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKAL-EVRAL 121 Query: 128 DAETPAVTAS-----QF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 E + A+ +F +VG+SPAMQ + + I V PS ATVL+ G+SG GK+L+ARA Sbjct: 122 REENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIARA 181 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R ++PLV +NC A+ E+L+ESELFG+EKGAFTGA + G+F +AD GT+FLDE Sbjct: 182 IHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVFLDE 241 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ +QV+LLR +QERE +R+GSN +DVRL+AAT++DL A + G FR+DLYYR Sbjct: 242 IGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDLYYR 301 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV + +P LR+R+ DIP LA HF+ + A V+ T M+ L+ Y WPGN+REL Sbjct: 302 LNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMAYHWPGNVREL 361 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP----LVEVEKEVILAALEKT 417 EN +ER++V+ TG + ++ L A P G P L + E+E+I AL + Sbjct: 362 ENVIERSLVMATGTQLDADDIKLESAPRPRAQGNDNHFLPEGLSLDQYEQEIIREALRRA 421 Query: 418 GGNKTEAARQLGITRKTLLAKLSR 441 GNK++AAR LG+TR L +L++ Sbjct: 422 DGNKSQAARLLGLTRNALRYRLTQ 445 >UniRef50_Q39U11 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=Q39U11_GEOMG Length = 449 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 192/437 (43%), Positives = 288/437 (65%), Gaps = 7/437 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+VDD+ + +L A+LR GY+V A +A + + ++ D V+ D++M DGI Sbjct: 9 VLIVDDEPNALKVLAAILREEGYSVFKAGDAAEAEQALSKEDIDTVITDMKMPGKDGIQL 68 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 + + P IP++ +TAY SV++AV A+ GA Y IKP D+ L+ L +A+ S+ Sbjct: 69 MDFMAEHYPDIPIIFLTAYGSVDSAVHAITRGAFYYFIKPPDYVKLKGILARAVEQ-RSL 127 Query: 128 DAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 E + G +VG +P M + + V S ++VLI G++GTGKEL+AR++ Sbjct: 128 KRELETLRKRVSGGTPARIVGATPEMLRIFETVEAVKDSMSSVLICGETGTGKELIARSL 187 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R +KP V +NCAA+ L+ESELFG+EKGAF+GA RR GRF EA GT+FLDEI Sbjct: 188 HYGSVRRDKPFVAVNCAAMPRELIESELFGYEKGAFSGAFSRRIGRFEEAAEGTIFLDEI 247 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G++ +Q +LLR +QE+E++R+GSN+ I V+ RLI++T+R++ +E+ AG FR+DL+YRL Sbjct: 248 GELEMPLQAKLLRVLQEKEIERLGSNKKIKVNFRLISSTNRNIPSEITAGNFREDLFYRL 307 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVV ++VP LR RREDIPLLA ++ + R K ++ F + M + ++YDWPGNIR+L Sbjct: 308 NVVQVQVPPLRDRREDIPLLAAELVREYGAREGKVLR-FDDEVMQVFLNYDWPGNIRQLG 366 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKT 422 N +ERAVVL + I+ +ELP + + + Q ++ L E+E+ ILAALE++GGNK+ Sbjct: 367 NIIERAVVLAKKDRITTKELPEELKPYVVRVESRQQVRTLRELEEAAILAALEESGGNKS 426 Query: 423 EAARQLGITRKTLLAKL 439 AA+ LGI+RK L +L Sbjct: 427 HAAKMLGISRKALYKRL 443 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 203/447 (45%), Positives = 281/447 (62%), Gaps = 13/447 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL++DD+ ++ +LQ LL GY V + AL + E D+V+ D++M ++ G Sbjct: 7 ILIIDDEKNYLLVLQTLLEDEGYTVTAISDPETALAFLDESEVDVVVTDMKMPKVTGRQV 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA--LAHTH 125 L+ +K P IPVLIMTA+ S+E+AVE +K GA DY+ KP D L ++ A LA H Sbjct: 67 LERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYITKPFSNDELLLSIHNAVELARAH 126 Query: 126 SIDAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 V ++G +VG+S A++ +L + APS +TVLI G+SGTGKEL+ARAI Sbjct: 127 RQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGKELIARAI 186 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R + P V++NC ALN +LESELFGHEKG+FTGA R GRF +ADGGTLFLDEI Sbjct: 187 HYTSPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGGTLFLDEI 246 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 +++P +QV+LLR +QER +RVG + I VD+R++AAT++DLAA V G FR DLYYRL Sbjct: 247 AELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFRDDLYYRL 306 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVV I +P LR+RREDIPLL HF+ + N K F+ +A++ L Y+WPGNIR+LE Sbjct: 307 NVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKTFSTEALNYLTGYEWPGNIRQLE 366 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP--------LVEVEKEVILAAL 414 N VE +VL+ G I+ LP I + D+ P L ++E +I AL Sbjct: 367 NVVESCLVLVPGTVINVDNLPAEIRDEESQFKSAVDLLPVQLDLADTLEKIEAALIRRAL 426 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 + + +AA LGI++ L KL + Sbjct: 427 VRADLVQVKAAEYLGISKSLLQYKLKK 453 >UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulator n=5 Tax=Cystobacterineae RepID=Q1D3M5_MYXXD Length = 457 Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust. Identities = 208/439 (47%), Positives = 277/439 (63%), Gaps = 11/439 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD + +L+ L GY V +A G A+ Q+R +V+D VLCD+RM ++DG Sbjct: 7 VLVVDDHVEMGQMLKEPLTDDGYKVDIATGGADAIAQLRARVYDAVLCDLRMQDVDGFDV 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT--- 124 L + L+P +PV++MTA+ VE+AVEA+K GA Y KP D ++ +LE+AL Sbjct: 67 LDAARKLDPDLPVVMMTAFGGVESAVEAMKRGAFHYFTKPFRLDEVRLSLERALEQRRLR 126 Query: 125 --HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 H + A +VG S AM+ L + I VA S A VL+ G+SG+GKELVARA+ Sbjct: 127 TEHRTLKQQAADRGGLGALVGSSTAMRDLYALIERVAWSGAPVLVRGESGSGKELVARAL 186 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H R P V +NC AL +LLESELFGH KGAFTGA R G FVEADGGTLFLDEI Sbjct: 187 HFEGTRRAGPFVAVNCTALPHALLESELFGHVKGAFTGATTARRGLFVEADGGTLFLDEI 246 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD++P +Q RLLR +++ EV+ VG++ +VDVR++AATH+DL V GRFR D++YRL Sbjct: 247 GDMAPELQARLLRVLEDGEVRAVGADGSRTVDVRVVAATHQDLETRVKEGRFRADVFYRL 306 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERN-RKAVKGFTPQAMDLLIHYDWPGNIREL 361 NVV + +P LR+RREDIP L HFLQ+ RN R V+ F+P+ + L W GN+REL Sbjct: 307 NVVTLRLPPLRERREDIPALIEHFLQQAKARNPRSVVQRFSPETLAALGALPWAGNVREL 366 Query: 362 ENAVERAVVLLTGEYIS----ERELPLAIASTPIPLGQSQ-DIQPLVEVEKEVILAALEK 416 EN V+R VVL + E + LP + PL +Q I PL ++E E I A+ + Sbjct: 367 ENLVQRLVVLGSTEVVDLPQLRPHLPSDTSQENHPLAAAQRTIVPLRQLETEYIAWAVAR 426 Query: 417 TGGNKTEAARQLGITRKTL 435 GGNKT+AA LGI T+ Sbjct: 427 CGGNKTKAAELLGIDVSTI 445 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust. Identities = 207/473 (43%), Positives = 294/473 (62%), Gaps = 39/473 (8%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD++ Q LL G G++V A++G Q ++ VRE++ +LV+ DVRM MDG+ Sbjct: 4 ILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDGLTA 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ I+ ++ +PV+IMTAYS+ ETA+EA K GA DY++KP + ++ A +E+A+ + Sbjct: 64 LRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAGRRM 123 Query: 128 DAETPAVTASQFG---------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 A V G +VG S AM + I AP++A VL+ G+SGTGKELV Sbjct: 124 RARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKELV 183 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARA++ S R EKP + +NC A+ ++LLESELFG+EKGAFTGA RR G+ +A+GGT+F Sbjct: 184 ARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGGTVF 243 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIGD+ +Q +LLR +QE++++R+G Q I VDVR+IAAT+ DL A V GRFR+DL Sbjct: 244 LDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFREDL 303 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYRL VV + +P LR+R EDIP LA +FL RF+ G TP+A+ L WPGN+ Sbjct: 304 YYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAYLEAQPWPGNV 363 Query: 359 RELENAVERAVVLLTGEYISERELPLAIAST------------PIPLGQSQDIQPLVE-- 404 REL N+V +A+V G + E +L A+ ++ + L Q +Q L+ Sbjct: 364 RELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELIRRT 423 Query: 405 ----------------VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 V + V+ AL TGGN+T AAR LG++R TLLAK+ + Sbjct: 424 LSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIEK 476 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust. Identities = 204/443 (46%), Positives = 291/443 (65%), Gaps = 10/443 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQV-REQVFDLVLCDVRMAEMDGIA 66 ILVVDDD + + LL+ GY +G A+E++ ++ + +VL D M EMDGI Sbjct: 4 ILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPEMDGIQ 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L +IK +N AI V++MT+Y +V +AVEA+K GA DY+ KP D L +EK L Sbjct: 64 LLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKIL-QMQR 122 Query: 127 IDAETPAVTAS-----QFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ E + + FG ++G+SP ++ + I+ V+ +EA +LI G++GTGKELVA+ Sbjct: 123 LEGEVDRLRSELGEKYTFGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELVAK 182 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +SAR+ V ++C++L E+LLESELFGHEKGAFTGA K R GRF +AD GT+FLD Sbjct: 183 AIHYNSARNNHRFVKVDCSSLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIFLD 242 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG+IS +Q +LLR +Q+ E + VGS++ I VDVR+IAAT+ DL V G FR DL+Y Sbjct: 243 EIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFY 302 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ I +P LR+R EDIPLLA HFL ++NRK V+GF+ +++L Y WPGNIRE Sbjct: 303 RLNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNRKTVEGFSRDTLNILTSYAWPGNIRE 362 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQS-QDIQPLVE-VEKEVILAALEKTG 418 LEN +ERAV+L I+ ++PL G S + +Q L+E E+++I+ LE Sbjct: 363 LENVIERAVILCKKNRITPEDVPLYQEKMGTRPGLSGKPLQELLEQTERQIIINTLEAND 422 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 +K + A+ L I+R +L KL++ Sbjct: 423 ADKEKTAKILKISRASLYNKLNK 445 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 199/448 (44%), Positives = 280/448 (62%), Gaps = 14/448 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDDD L +L GY A G +A+ ++ +Q FD+V+ D+ M MDG+ Sbjct: 10 ILLVDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAELDKQFFDVVVTDLNMPGMDGMGV 69 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE-----KALA 122 LK ++ + L++T + S+ +VEA+K GA DY+ KP+ FD L ++ K L Sbjct: 70 LKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVSTAIKFKRLE 129 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 ++I + VG SP +Q + I VA +++TVLI G+SGTGKEL+ARAI Sbjct: 130 RENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIARAI 189 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R + P+V +NC A+ E LLESELFGHEKGAFTGA K R GRF A+GGT+FLDEI Sbjct: 190 HYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIFLDEI 249 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+SP +QV+LLR IQE+ +R+GS + + VD+R++AAT++DL V FR+DLYYRL Sbjct: 250 GDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYYRL 309 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ IEVP LR R+ DIPLL F+ + A + VK + AM+ L+ + WPGN+RELE Sbjct: 310 NVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNVRELE 369 Query: 363 NAVERAVVLLTGEYISERELPLAI---------ASTPIPLGQSQDIQPLVEVEKEVILAA 413 N VER ++L +G+ I + +LP I A +P G + + E EK +I+ A Sbjct: 370 NVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGGIRFDHAVEEYEKNLIVQA 429 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 LE+ KT+AA+ L I R TL+ K+ R Sbjct: 430 LEEANWVKTQAAKLLHINRTTLVEKMKR 457 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/442 (45%), Positives = 288/442 (65%), Gaps = 12/442 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD + LLR G+ V A G A ++V+ + FD+VL D+RM +DG+ Sbjct: 31 VLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMPTVDGMEV 90 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH-- 125 L+ ++ +P V++MTAY ++E+AVEA++ GA D+L KP + + KAL Sbjct: 91 LRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVAKALEKRRLL 150 Query: 126 ---SIDAETPAVTASQFGM---VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 ++ AE ++G+ VG+SPAM+ +L + VAP++ATVL+ G+SGTGKELVA Sbjct: 151 GEVNLFAEE---FRKRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKELVA 207 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RA+H +S RS+KP V +NCAA+ ++LLESELFGH +GAFTGA + R G F EA+GGTLF+ Sbjct: 208 RALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGTLFI 267 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG+ SP Q +LLRA+QE E++RVG + + V+VR+IAAT++DL + RFR+DL+ Sbjct: 268 DEIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFREDLF 327 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVV + +P LR+RRED+PLLA HFLQRF +R + + TP+A+ L+ +DWPGN+R Sbjct: 328 YRLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRT-GSERVLTPEAVASLVAHDWPGNVR 386 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGG 419 ELEN +E+A L TG I ++ + + P + + E+ I AAL + G Sbjct: 387 ELENIIEQAAALCTGREIRAADVQIEARAAPAGGAGVTLADAVEDTERRAITAALARCGN 446 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 + AR LGI+ TL K+ R Sbjct: 447 DLGRVARDLGISGTTLWRKMKR 468 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/444 (45%), Positives = 281/444 (63%), Gaps = 12/444 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + +LV+DDD + + L G++ +A G+ + ++ ++ FD+VL D++MA++ G+ Sbjct: 8 LQVLVIDDDKTLAETISESLDRRGHSCTVATGGKAGVAKLEQEAFDVVLTDLKMADLHGL 67 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 ++ K L P V ++T ++ V+TAVEA+K GA YL KPLD L+A +E + Sbjct: 68 EVVERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAVIENSAKRVG 127 Query: 126 SIDAETPAVTASQFGM---VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 ++ E +FG VG SP MQ +L + APS A+VLI G++GTGK+L ARA+ Sbjct: 128 TL-RELRRQLDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTGKDLAARAL 186 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H + R KP +NCA L ESLL+SE+FGHEKGAFTGAD++R GRF A GGTLFLDEI Sbjct: 187 HTNGPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQRVGRFEHAHGGTLFLDEI 246 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+ +Q +LLRA++ EV RVG+N+ + VDVR+IAAT++DL EV AGRFRQDLY+RL Sbjct: 247 GDMPLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGRFRQDLYFRL 306 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 V +++P LR+ REDIP L HFL+ FA R+ K V P YDWPGN+REL Sbjct: 307 KVGTVKLPPLREHREDIPQLVSHFLKEFARRDNKPVPKVAPAVWKSFEGYDWPGNVRELR 366 Query: 363 NAVERAVVL-LTGEYISERELPLAIASTPI-----PLGQSQDI-QPLVEVEKEVILAALE 415 N + +VL L GE ++ + P P P G Q + +PL EVE+ I AL+ Sbjct: 367 NLLASMMVLDLDGE-LTPDDFPEDPGVKPAGTAERPHGPDQLVGRPLDEVERYYIEKALD 425 Query: 416 KTGGNKTEAARQLGITRKTLLAKL 439 TGGN+ EAAR L I+ +TL K+ Sbjct: 426 LTGGNREEAARLLNISERTLYRKI 449 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust. Identities = 208/444 (46%), Positives = 282/444 (63%), Gaps = 12/444 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+DD L +L GY V +SG +ALE++R+ FDLV+ D+++ MDG+ Sbjct: 6 ILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGMDGMEV 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNL----QATLEKALAH 123 LK IK + I +I+TAY +V+TAV A+K GA DY++KP D + L + TLEK Sbjct: 66 LKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLEKRGLF 125 Query: 124 THSIDAETPAVTASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 ++ + F +VG S +M + I V S +TVLI G++GTGKELVARAI Sbjct: 126 LDNLRLQQQLEKKYTFENIVGTSESMMGVFKTINRVKESRSTVLIRGETGTGKELVARAI 185 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +SAR+ KP + +NCAALNE L+ SELFGH KGAFTGA + G F ADGGTLFLDEI Sbjct: 186 HFNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVADKRGLFEAADGGTLFLDEI 245 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+ +Q LRA+++ E+Q VGS Q V VR+IAAT+++L A V G FR+DLYYRL Sbjct: 246 GDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAMVEQGGFRKDLYYRL 305 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVV I++P LRQR+EDI LLA HFL ++A +N K ++G P+A+ LL +Y WPGN+RELE Sbjct: 306 NVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNKNIRGIAPRALRLLENYSWPGNVRELE 365 Query: 363 NAVERAVVLLTGEYISERELPLAIAS-----TPIPLGQSQDIQPLVEVEKEVILAALEKT 417 N +ERA + + I+ LP + P P S + L V + I+ LE T Sbjct: 366 NIIERATLFELTQEITPDSLPQVVIEPCTVLDPSPF--SMETTSLEAVSRRHIVRILEMT 423 Query: 418 GGNKTEAARQLGITRKTLLAKLSR 441 NKT+A++ LGI R TL ++R Sbjct: 424 NHNKTQASKLLGIDRSTLWRIMNR 447 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 207/459 (45%), Positives = 288/459 (62%), Gaps = 22/459 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MTH+ +LVVDD+ C +L + L G V A +G AL+ + ++ DLV+ D RM Sbjct: 1 MTHN---LLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMP 57 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG L EIK P +PV++MTAYS+V+ AV++++ GA DY+ KP D D L T+ KA Sbjct: 58 GMDGPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKA 117 Query: 121 LAH------THSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 L + AE A +VG SPA + +L + V S AT+L+ G+SGTG Sbjct: 118 LQFRDILKDNQRMRAEL-AEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTG 176 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KE+VARAIH R++KP V +NCAA+ E LLESE+FGH KGAFTGA R GRF +AD Sbjct: 177 KEMVARAIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADK 236 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GTLFLDE+GD+ +Q ++LRA+QER ++ VG + VDVR+IAAT+++L V F Sbjct: 237 GTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEF 296 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DLYYRLNV I +P+LR+R EDI LLA HF K + GF+P+A+ + Y W Sbjct: 297 REDLYYRLNVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPEALQAMASYAW 356 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAI---------ASTPIPLGQS--QDIQ-PL 402 PGNIREL+N VERA ++ TG+ I E++LP + +S I +G D++ L Sbjct: 357 PGNIRELQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSAAISVGPQVPSDLEAAL 416 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EVEK ILAAL+++ G + AA+ +GI+ ++ +L + Sbjct: 417 AEVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKK 455 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/443 (45%), Positives = 275/443 (62%), Gaps = 9/443 (2%) Query: 8 ILVVDDDISHCTILQALLRG-WGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL VDD+ ++C I + + V A SG +ALE+++ D+V+ D+ M MDGI Sbjct: 7 ILFVDDEPAYCRIFSKRIGADPRFRVETAGSGAEALERLQHSPADIVITDLSMPLMDGIE 66 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L EIK+L P I +LI+T+ S V+A+K GA DYL+KP DF+ ++ ++ L+H + Sbjct: 67 LLSEIKSLYPQIFILILTSDDSTSQVVKAMKAGAYDYLLKPFDFEMVERSIATILSHKAA 126 Query: 127 IDAE-TP-AVTASQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + A P ++ Q+ ++G+ M + I+ VA + ATVLI G+SGTGKEL+A A Sbjct: 127 VQAGLCPECLSGEQYCFENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGKELIASA 186 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IHA S R +KP + +NCAAL E L+ SELFGHEKGAFTGA R++G F +A GGTLFLDE Sbjct: 187 IHAKSTRKDKPFIQINCAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTLFLDE 246 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGDISP QV LLR ++ QRVG + I DVRLI AT+RDLAA +FR+DLYYR Sbjct: 247 IGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFREDLYYR 306 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV+++ P LR RR DIPLL +FL+R+ N K + G T AM LL +YDWPGN REL Sbjct: 307 LNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQIDGVTRDAMTLLCNYDWPGNCREL 366 Query: 362 ENAVERAVVLLTGEYISERELPLAIAST---PIPLGQSQDIQPLVEVEKEVILAALEKTG 418 N +E AV+ G + + LP I ++ L + L + E +I LE++ Sbjct: 367 ANIIEHAVIFSRGRTLDKDSLPSQIRTSDRHSSGLTLNLATATLADAESALIKKVLEESN 426 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 N +AA L I R TL K+ + Sbjct: 427 WNLKKAAELLDIARGTLYGKMEK 449 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 206/455 (45%), Positives = 283/455 (62%), Gaps = 25/455 (5%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + +LVVDD+ + L+ALL GY+V +S A +++ + FD+ L D++M ++ G+ Sbjct: 10 VRVLVVDDEPTLLRALEALLGQKGYSVVGLDSPIVATQRLAHEDFDVALLDIKMPQLSGL 69 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPL-DFDNLQATLEKALAHT 124 L +K P + V++MT +++VETA+ A+++GA DYL KP D + + + KA Sbjct: 70 ELLSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPFEDVELVARAVAKAAERK 129 Query: 125 HSIDAETPAVT-------ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 D T + G+VG S ++ ++ I VA S TVL+ G+SGTGKEL Sbjct: 130 MLFDRNRRLETQLREKEGGAPEGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGTGKEL 189 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARA+HA S R +P V LNC AL E+LLESELFGH KGAFTGA + ++G F ADGGT+ Sbjct: 190 VARALHARSPRRAQPFVALNCGALTETLLESELFGHVKGAFTGAQRDQKGLFDAADGGTI 249 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGDI P QVRLLR +QE E++RVGS + + VDVR+IAATHRDL V AG+FR+D Sbjct: 250 FLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGKFRED 309 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRLNV+ I +PSLR R +D+PLLA HFL+R+AER K V+ P A++LL Y WPGN Sbjct: 310 LFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALAPDAIELLCGYRWPGN 369 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPL------GQSQDI-----------Q 400 +RELENA+ERAVVL GE ++ +LP A+ PL G + + Q Sbjct: 370 VRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLVREAPAGGDEAVWLTMSYATAKEQ 429 Query: 401 PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTL 435 L EK + + N + AAR+ G+ R Sbjct: 430 SLRRFEKGYVETLMRHCDNNISAAARKAGMDRSNF 464 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust. Identities = 206/462 (44%), Positives = 301/462 (65%), Gaps = 30/462 (6%) Query: 8 ILVVDDD-ISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L++DD+ + ++L AL + GY+V A++G +++++ +DLV+ D+RM DG+ Sbjct: 5 VLIIDDEPLMRLSMLDAL-KAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMPGSDGLQ 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 ++ K + V+++TA+ SV+TAV+A+K GA DY+ KP D L T+++A + Sbjct: 64 VVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPMDELLMTVDRA-TKVQA 122 Query: 127 IDAETPAVTA---SQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E A+ +F GMVGK+ M+ +L ++ LVA ++ATVLI G+SGTGKE++A Sbjct: 123 LRQENTALRQELEGKFNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVIAN 182 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +S R + L+ ++CAAL E+LLE+ELFGHE+GAFTGA K+R GRF A GTLFLD Sbjct: 183 AIHRNSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTLFLD 242 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG+I+PM+QV+LLR +QE+ +RVG + I DVRL+ AT ++L EV AGRFR+DL+Y Sbjct: 243 EIGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFREDLFY 302 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV + +P LR+R+EDI +LA H LQR R ++ +KGF+ A D+L+HY +PGN+RE Sbjct: 303 RLNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSVAARDVLLHYSFPGNVRE 362 Query: 361 LENAVERAVVLLT-GEYISEREL-----------PLAIASTPIPLGQS-----QDIQPLV 403 LENA+ERAV L G+ I +L PL G S + L Sbjct: 363 LENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVTNARQTGTLA 422 Query: 404 EV----EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EV E+E ILA LE+ G ++T A++ LG++RK L K R Sbjct: 423 EVRERCEREYILAVLEREGWSRTAASKSLGLSRKALWEKCKR 464 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 184/438 (42%), Positives = 282/438 (64%), Gaps = 11/438 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL++DD+ S +++ +L G+ V A S +++L + ++ FDL++ D + + G+ Sbjct: 4 ILLIDDEESILKVIKTVLSEAGFEVLTAKSKKESLSLIEKEKFDLIISDFLLEDGTGLEI 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ + + P LI+TAY S+ AVEA+K GA Y+ KP+D DNL ++ + + Sbjct: 64 LESFRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPIDIDNLIKIIDFYIKKQENF 123 Query: 128 DAETPAVTASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 D E +F G++GKS M+ L EI +V+ SE+++LI G+SGTGKELVA+AIH S Sbjct: 124 DVE------EEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRS 177 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 R+ +P + +NC+A+ L E+ELFGHEKG+FTGA R G+ A GTLFLDEIG++ Sbjct: 178 KRANQPFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEMP 237 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 MQ +LLR +QERE RVG ++I + R+I+AT+R+L V FR+DL+YR+NV+ Sbjct: 238 LFMQAKLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIH 297 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 +++P LR+R+EDIPLL F+ +F++ N K V A+++L++YDWPGN+R+LEN +E Sbjct: 298 LKIPPLRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENIIE 357 Query: 367 RAVVLLTGEYISERELPLAIASTPIPLGQS----QDIQPLVEVEKEVILAALEKTGGNKT 422 RAVVL GE I+ LP I S + ++ + L ++EK +IL L++ N+T Sbjct: 358 RAVVLCQGEIITANHLPDRIKSNSQKISENIRSENNSLNLYDIEKNIILKVLQEENFNQT 417 Query: 423 EAARQLGITRKTLLAKLS 440 AA++LGI+RK L K+ Sbjct: 418 RAAQKLGISRKQLRTKMK 435 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/456 (43%), Positives = 288/456 (63%), Gaps = 28/456 (6%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ L LR V A SG++AL +++ FD+V+ D++M ++ GI Sbjct: 4 ILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTGIDI 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L++ K ++P V+++TA+ S+E AVEA+K GA +YLIKP D ++A +EKA H + Sbjct: 64 LRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHLSLV 123 Query: 128 DAE-------TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + + + F ++G+SP M+ +L ++ VA S A+V I+G+SGTGKE++A+ Sbjct: 124 QENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIAQ 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIHA+SARS+ P + +NCAA+ E+L+ESE FGHEKGAFTGA+ +R GRF A GTL LD Sbjct: 184 AIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EI +I +Q +LLRAIQE+E +RVG ++ I VDVRLI+ ++RD+ + R+DLYY Sbjct: 244 EITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLYY 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV I +P LR R EDI LA +FL++ N K K F+ +++ L+ Y WPGN+RE Sbjct: 304 RLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFSKESIKKLVGYAWPGNVRE 363 Query: 361 LENAVERAVVLLTGEYISER---------ELPLAIAS-------TPIPLGQSQDIQPLVE 404 L N VERAVV+ T I+ LPL AS T +P+G + L E Sbjct: 364 LANIVERAVVMTTNSEITPEHLYIENNHPNLPLRTASTLSQNTLTSLPVGMT-----LQE 418 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +EK +I+ L+ N+T+ A LGI+ +TL KL+ Sbjct: 419 LEKRLIIETLQAQHNNRTKTAEVLGISVRTLRNKLN 454 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/451 (43%), Positives = 288/451 (63%), Gaps = 17/451 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+ DD + + L G++V G +A+ R++ D+V+ D+RM +DGI Sbjct: 31 ILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDLRMVPVDGIEV 90 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 ++ ++ L+P VL+++A+ ++ AVEA++ GA+D++ KP D L+A +EK++ Sbjct: 91 VRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRARVEKSIEIARER 150 Query: 128 DAETPAVTASQ-----------FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 A ++ G+VG S M+ +L ++ VA + ATVL+ G+SGTGKE Sbjct: 151 KGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLGESGTGKE 210 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARAIH +S R E+P V+++CAA+ E LLESELFGHEKGAFTGA +R+ GRF A+GGT Sbjct: 211 LVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRFELANGGT 270 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDE+G+I +QV+LLR +QER+ +RVG + + VDVR+++AT+R+LA V +GRFR+ Sbjct: 271 LFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMVESGRFRE 330 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNVV I +P LR R D+ LA F+ R A R +AV G P+A++LL + WPG Sbjct: 331 DLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALELLRRHRWPG 390 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAI------ASTPIPLGQSQDIQPLVEVEKEVI 410 N+RELEN +E+A+V GE + R+LP + S P+P G L ++E+++I Sbjct: 391 NVRELENVIEQALVFAEGELVRPRDLPEGVRKAPPAPSLPVPSGDRSLTDILEDLERQLI 450 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 LAA EK G K E AR LGI L KL + Sbjct: 451 LAAYEKARGVKAETARLLGIKPSALYYKLEK 481 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/451 (43%), Positives = 289/451 (64%), Gaps = 18/451 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+D+ ILQ L G++V + +A E + FDL L DVR+ + +GI Sbjct: 7 ILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDVRLPDGNGIEL 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 ++E + +P + ++IMT Y+ V+TAV+A++ GA D+L KP D D + +++ L T I Sbjct: 67 MREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDE-LIKTRQI 125 Query: 128 DAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 A+ + G++G+ PA+Q L ++L+A S++TVLI G+SG GKE++A+A Sbjct: 126 KADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVLAKA 185 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S +RS KPLV++NC A+ E LLESELFGH KGAFTGA + R GRF A+GGT+FLDE Sbjct: 186 LHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIFLDE 245 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+S +QV+LLR +QER + VGS Q I VDVR+IAATHRDL AE+ AGRFR+DLYYR Sbjct: 246 IGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDLYYR 305 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV+ + +P LR+R +DI LL HF+ RF ++ + + G + + ++++Y WPGN+REL Sbjct: 306 LNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGNVREL 365 Query: 362 ENAVERAVVL----------LTGEYISERELPLAIASTPIPLGQSQDIQPLV-EVEKEVI 410 +N +ER L L IS++E L + + D++ V E E +I Sbjct: 366 QNLIERVTTLKRHGIMELEDLPSRMISDKERVLQSFRMDVENAECIDLKSTVDEFESHLI 425 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L+AL++ NK +AA L + R TL+ K+ + Sbjct: 426 LSALQRFQWNKNQAANFLAMNRTTLVEKIKK 456 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 366 bits (939), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 202/449 (44%), Positives = 289/449 (64%), Gaps = 16/449 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ ++ +L A+L GY ANSG +A++ + DLVL D++M MDG+ Sbjct: 4 ILIVDDEKNYPPLLAAVLGDEGYETLTANSGLEAIQILEGSDVDLVLTDMKMPGMDGMEL 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 ++ IK +P +PVL+MTAY +V+ + A++ GA Y+ KP + L +++ALA + Sbjct: 64 MERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQNEQLILFVKQALAMYRVV 123 Query: 128 DA----ETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + FG ++GKSPAM ++ I VAP+ ATVLI G+SGTGKE+VA++I Sbjct: 124 QENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKSI 183 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R + P V +NCAAL ES+LESELFGHEKGAFTGA ++GRF ADGGTLFLDEI Sbjct: 184 HFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDEI 243 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G+IS +QV+LLR +QE+ +RVG + I VD+RLIAAT+RDL EV FR+DL+YRL Sbjct: 244 GEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRL 303 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAE--RNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 NV+ I++P LR+R++DIPLL HFLQ++A V+ P L Y WPGN+RE Sbjct: 304 NVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVRE 363 Query: 361 LENAVERAVVLLTGEYIS----ERELPLAIAST----PIPLGQSQDIQPLVEVEKEVILA 412 LEN +ERA++L + IS REL ++++T IP+ + + L VE+ +I Sbjct: 364 LENVIERAIILCNSDAISVNDLPRELTRSVSNTLHMEGIPVDATL-YETLSMVEQAMIKR 422 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 A+ + ++ AA+ LGI + L K+ + Sbjct: 423 AMLMSDNVQSHAAQILGIGKSGLNQKIKK 451 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 366 bits (939), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 190/414 (45%), Positives = 279/414 (67%), Gaps = 15/414 (3%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 T++ +LV DD+ S ++Q +L V A+ G +AL+ QV D L D+RM + Sbjct: 15 TNEKPVVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEALKVSEAQVVDCALVDIRMPK 74 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG+A L+++ N IPV+++TAY + + +EA++ GA D++ KP D D+L + KAL Sbjct: 75 VDGLAVLEQLVLKN--IPVIVITAYGTSDVTIEAMRRGAYDFITKPFDIDDLAEKVRKAL 132 Query: 122 AHTHSIDAETPAVTASQFG--MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 ++ + + P + + MVG S AMQ + I VA ++ TVLI G+SGTGKELV+ Sbjct: 133 DYSKTTEV-LPIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVS 191 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH +S R++ P V +NCAA+ E LLESELFG+EKGAFTGAD+R+ G+F A+ GT+ L Sbjct: 192 RAIHYNSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILL 251 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+SPM+Q ++LR +QE ++R+G + I VDVR++AAT++DL + V +G FR+DLY Sbjct: 252 DEIGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLY 311 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 +RLNVV I++P LR+R+EDIPLLA HF++++A K V G TP+ M L+ YD+PGN+R Sbjct: 312 FRLNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAALMAYDYPGNVR 371 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAA 413 ELEN + RAV L +G+ ++ LP + P P ++PL KEV+L A Sbjct: 372 ELENIIARAVALCSGKVLTLDVLPPQVVE-PKPA-----LRPL----KEVLLEA 415 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 366 bits (939), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 199/453 (43%), Positives = 285/453 (62%), Gaps = 23/453 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ L++ L+ GY+V+ ++ + + +R + FD+V+ D+R+ M+G+ Sbjct: 5 ILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLPNMNGMEL 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LKEIK NP I V+IMTAY ++E+AV A K GA DY+ KP D L L++AL H ++ Sbjct: 65 LKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRALQHKNT- 123 Query: 128 DAETPAVT------ASQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 T VT S+F +VG S AM+ L+ + ++ ++T+LI G+SGTGKE + Sbjct: 124 ---TAEVTRLRREIQSEFEFHNIVGSSHAMKKLIETVKEISDRDSTILIQGESGTGKEKI 180 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 A A+H S R P + ++CAALN +LESELFGHEKG+FTGA K R GRF A+GG++F Sbjct: 181 AGAVHYHSGRKMGPFIRVSCAALNREILESELFGHEKGSFTGAIKTRRGRFELANGGSIF 240 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LD++ DI MQV+LLR IQER +RVG + +S++VR+I AT +DL G FR+DL Sbjct: 241 LDDVDDIPLDMQVKLLRVIQERTFERVGGEKTLSINVRIICATKKDLLLLAKKGEFREDL 300 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRLNVV I +P LR+R++DIP L +FL++F R+ A+ G + + +++L+ Y+WPGN+ Sbjct: 301 FYRLNVVPITIPPLRERKDDIPRLINYFLKKFVSRHEDALPGVSRETLNVLMEYNWPGNV 360 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPI-------PLGQSQDIQ---PLVEVEKE 408 RELEN +E AV I+ LP + I L +Q IQ L EVEK Sbjct: 361 RELENVIEHAVAFSHSHGITIDTLPDYLKRVEIHKKLISMDLSNTQTIQLHDVLTEVEKR 420 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +I A +KT GN+ + A LGI R TL KL R Sbjct: 421 LIEWAHQKTNGNQVKMAEILGIPRTTLRNKLVR 453 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 365 bits (938), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 200/445 (44%), Positives = 275/445 (61%), Gaps = 16/445 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILV+DD+ + LQ L GY V A G +E + DL++ D++M M G Sbjct: 5 ILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPRMSGELV 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ + A+ P IP++I+T + +VE AVEA+ GA D+L KPLD + L + +AL + I Sbjct: 65 LQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRALQNRELI 124 Query: 128 DAETPAVT-----ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + S +VG+SPAM + + A S+A+VLI G+SG GKEL+A AI Sbjct: 125 VQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELIANAI 184 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R KPL+ ++CA+ E +LESELFGHE+GAFTGA R +GRF A G++FLDEI Sbjct: 185 HNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEGSMFLDEI 244 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G++S +Q++LLR +QER +RVG + I VDVR+I+AT+R+L E+ FR+DLYYRL Sbjct: 245 GEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFREDLYYRL 304 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVV I VP+LR+R+ED+PLL FL+ AE N K + PQA L YDWPGNIR+L Sbjct: 305 NVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWPGNIRQLR 364 Query: 363 NAVERAVVLLTGEYISERELPLAI------ASTPIPLGQSQDIQPLVEVEKEVILAALEK 416 N +E AV++ +G I +L I +S IP+G S + + EKE+IL LE Sbjct: 365 NCIESAVIMSSGPVIHIEDLSEPIRSLGETSSIRIPIGVSME-----DAEKEIILQTLEA 419 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 GNK++ A LGI RKTL KL + Sbjct: 420 QKGNKSKTADVLGIGRKTLYLKLDQ 444 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 365 bits (938), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 205/470 (43%), Positives = 288/470 (61%), Gaps = 31/470 (6%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M IL+VDDD + LL GY V A+SG + VRE V DLV+ DVRM Sbjct: 1 MDSRTAQILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAVREAVPDLVVMDVRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ ++ P +PV+IMTA+ + + A+EA K GA DY++KP D + +EKA Sbjct: 61 GISGLEAYAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEKA 120 Query: 121 LAHTHSIDA------ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 +A S+ + E A A+ ++G+S AMQ L I AP++ATVLI G+SGTG Sbjct: 121 VAAGRSMRSRVAVGEEGEAAVAAD-AIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTG 179 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KELVARA++ S R++KP + +NC A+ E+LLESELFG+EKGAFTGA R+ G+ +A+ Sbjct: 180 KELVARAVYQHSLRADKPFLVINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQANR 239 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GT+FLDEIGD+ +Q ++LR +QE+ V+R+G Q+I VDVR+IAAT+RDL A V AG+F Sbjct: 240 GTVFLDEIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQF 299 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DLYYRL VV + +P LR+R DIPLL +FL R++ + G + +AM LL W Sbjct: 300 REDLYYRLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQPDPGVSDEAMALLTTQPW 359 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP----LVEVEKE-- 408 PGN+REL N V++A++ G + E+ A + P+ G + P V +E Sbjct: 360 PGNVRELGNTVKKALIFNLGAPLGPDEVQKA-SGEPLRGGGPAEADPGDSLARYVRRELA 418 Query: 409 -----------------VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 VI ALE TGGN+++AAR LG++R TLLAK+ + Sbjct: 419 SGRESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIEK 468 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 365 bits (937), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 195/454 (42%), Positives = 286/454 (62%), Gaps = 21/454 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD++S L+ LL G+ V A G AL ++R++ FDL++ D+RM +G+ Sbjct: 4 ILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMPPPNGLEL 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH---- 123 L + + L P +PV+++TA++S + AV A+K GA DYL KP D ++ + AL+ Sbjct: 64 LDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALSSRRQL 123 Query: 124 ---THSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 T ++E PA G++G SP M + I VAP++A VLIHG+SGTGKELVAR Sbjct: 124 PEPTLKTNSEVPA-NGGFVGIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKELVAR 182 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH S + V + C+A+ ESL ESELFGH KGAFTGA R G F +A+ GT FLD Sbjct: 183 AIHQLSPAVQHQFVPIICSAIPESLFESELFGHAKGAFTGATTNRTGLFEQANYGTAFLD 242 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG+++P+ Q +LLR +QERE++RVG + I ++ R+I+AT+RDL EV AGRFR+DL+Y Sbjct: 243 EIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMISATNRDLEEEVAAGRFREDLFY 302 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL VV I VP LR+R+ D+PLL HFL +++ K ++ + A++LL++YD+PGN+RE Sbjct: 303 RLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKDIRKISSYALELLMNYDFPGNVRE 362 Query: 361 LENAVERAVVLLTGEYISERELPLA---IASTPIPLGQ---------SQDIQP-LVEVEK 407 LEN +ER V + + I L L P P ++ ++P L + E+ Sbjct: 363 LENIIERGVAMENSQIILPESLTLTGRRHGGQPAPADDRGSLEADVFNRGLEPALTDFER 422 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++I+ AL+K G +KT AA L + ++L K+ + Sbjct: 423 QMIIKALQKAGNSKTRAAELLNTSFRSLRYKIKK 456 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 365 bits (937), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 198/432 (45%), Positives = 274/432 (63%), Gaps = 22/432 (5%) Query: 24 LLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIM 83 +L+ G+ V + + L ++ D+V+ D++M + G+ L+ IKA P + V++M Sbjct: 25 ILQREGHPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDVEVIMM 84 Query: 84 TAYSSVETAVEALKTGALDYLIKPL-DFDNLQATLEKALAHTHSIDAETPAV-----TAS 137 TA+++VETAVEA+K GA DYL KP + D + T+ KA A ++ T A+ S Sbjct: 85 TAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKA-AERKALKDRTRALEEALTVRS 143 Query: 138 QF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTL 196 QF ++G+S M+ + + V+ S ATVLI G+SGTGKELVARAIH SAR +KP V + Sbjct: 144 QFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKPFVAV 203 Query: 197 NCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRA 256 NC+AL E+LLESELFGH KG+FTGA ++G F ADGGT+FLDEIGD+ P QVRLLR Sbjct: 204 NCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVRLLRV 263 Query: 257 IQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRR 316 +QE EV+RVG+N+ + VDVR+IAATH DL+ G+FR+DL+YRLNV+ I++P LR R Sbjct: 264 LQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPLRDRP 323 Query: 317 EDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEY 376 ED+PLLA HFL+ +A + K V G +P+AM+ L W GN+RELEN +ERAVVL E Sbjct: 324 EDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLTGNEV 383 Query: 377 ISERELPLAIASTP-------------IPLGQSQDIQPLVEVEKEVILAALEKTGGNKTE 423 I +LP S P +P Q++ + + E+ + A LEK N + Sbjct: 384 IDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLA-MRAFERRYLSALLEKNNQNVSS 442 Query: 424 AARQLGITRKTL 435 AAR G+ R Sbjct: 443 AARAAGVDRSNF 454 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 365 bits (937), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 198/461 (42%), Positives = 294/461 (63%), Gaps = 28/461 (6%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ IL VDD+ S +L+ LR GY A GR+ALE + Q D V+ D+ M Sbjct: 1 MSDSTKYILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG+ LKE++ + +PV+I+TA + +A++A+K GA DY+++P D L+ +++A Sbjct: 61 RMDGLQLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDLAELELAIKRA 120 Query: 121 LAHTHSIDAETPAV---TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 L+ + + E + A G++G SPAMQHL I VAP +ATVL+ G++GTGKEL Sbjct: 121 LSFSRLV-VENRFLREDKADTTGLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKEL 179 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIHA+S R+ V +NCAA+ +LESELFGHEKGAFTGA K R G+F ADGGTL Sbjct: 180 VARAIHAASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTL 239 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDE+ ++ +Q +LLRA+QE ++R+G N+ I+VD+R++AAT+R+ + G+ R+D Sbjct: 240 FLDEVTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLRED 299 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRLNV I++P+L+ R+ DI LLA HFL + R+ + QA+ +L+ YDWPGN Sbjct: 300 LYYRLNVFRIDLPALKARKSDIELLATHFLAK-----RRV--DISAQAVQVLMQYDWPGN 352 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIAST------PIPLGQSQDI-----QPLV--- 403 +RELEN +ERA ++ + I + LP + ++ LG + D PL Sbjct: 353 VRELENVLERAAIISGNQQIQPQHLPAEMLNSNGEFIDATALGHNADTAEAPQNPLCLPN 412 Query: 404 ---EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++E+++I AL +T GNK++AA+ L I+ ++L KLS+ Sbjct: 413 AVEQLERQLIAKALAQTNGNKSKAAKLLEISERSLWYKLSQ 453 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 365 bits (936), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 204/452 (45%), Positives = 297/452 (65%), Gaps = 20/452 (4%) Query: 8 ILVVDDD-ISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ + ++ + L RG GY V A SG QALE V D++L DVR+ +DG+ Sbjct: 8 ILVVDDEKLIRWSVAERLQRG-GYEVLSAESGEQALEMVAATPPDVMLLDVRLPGIDGVQ 66 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 TL+ +L+P + VL+M+A+S+V+ AVEA+K GA+D+L+KP F L +E+ALA+ + Sbjct: 67 TLQRALSLHPEVAVLMMSAHSTVDIAVEAMKHGAIDFLVKPFPFQQLDEAVERALANVRT 126 Query: 127 IDAETPAVTASQFG------MVGKSPAMQHLLSEIALVAPSEAT-VLIHGDSGTGKELVA 179 + +T+ + G +VG S AM+ + S I+ +A S+ T VLI G+SG+GKE+VA Sbjct: 127 -RRQIATLTSDKRGASAVEAVVGSSAAMEQVRSMISRLAGSDTTTVLIEGESGSGKEVVA 185 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH SAR++KP++ +NCAAL E LLESELFGHE+GAFT A ++ G F A+GG++ L Sbjct: 186 RAIHFRSARADKPILQVNCAALPEHLLESELFGHERGAFTDAHAQKRGLFETAEGGSVML 245 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ P Q +LLR ++ + +RVG Q + DVR+IAAT+ +L V GRFR DL+ Sbjct: 246 DEIGDLPPGGQAKLLRLLENKTFRRVGGVQELRADVRVIAATNVNLEERVAEGRFRADLF 305 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 +RLNVV I VP LR+ +D+P+L HF+ RF + ++ VKG P AM+LL Y WPGN+R Sbjct: 306 FRLNVVRIVVPPLREHLDDVPILTAHFVARFDQEMKRQVKGVAPAAMELLRAYHWPGNVR 365 Query: 360 ELENAVERAVVLLTG-EYISERELPLAIASTPIPLGQ-SQDIQPLV--------EVEKEV 409 EL N +ERA +L G + I LP + P G+ + + P V +VE+++ Sbjct: 366 ELRNVIERAFILHAGADEIRPEHLPPELRKAAAPGGKRPEKLVPQVTGEGLVLDDVERKL 425 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I A+E+ GN+++AAR LG++R TL +L + Sbjct: 426 IAEAMERASGNQSKAARLLGVSRDTLRYRLKK 457 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 364 bits (935), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 211/481 (43%), Positives = 288/481 (59%), Gaps = 48/481 (9%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+ + L L G+ V LA +GR ALE + +Q DLV+ D+RM EMDGI Sbjct: 5 ILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMDGIEM 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L++IKA P +PV+I+T Y++VETAVEA+K GA+DY++KP + + T+ K Sbjct: 65 LQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQRQGE 124 Query: 128 DA----------ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 A PA + Q ++G+ LL VA S+ATVL+ G+SGTGKE+ Sbjct: 125 AALGSEGATPAAAVPAAASDQRTVIGRDAHFLRLLERARAVASSKATVLVLGESGTGKEV 184 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 AR IH S R P V LNCAAL E LLESELFGHEKGAFTGA ++G+F +A GGTL Sbjct: 185 FARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMSKKGKFEQAHGGTL 244 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 LDEIG++ +Q +LLR +QE EV R+G + + VDV ++A T+RDL A V G FR+D Sbjct: 245 LLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVLATTNRDLGAAVREGNFRED 304 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRLNV+ I +P++R+R EDI LLA HF++++ R +K K + + + Y WPGN Sbjct: 305 LFYRLNVIPIRLPAMRERPEDISLLADHFIEKYTARYQKPAKKLSAASRQRFLEYQWPGN 364 Query: 358 IRELENAVERAVVLLTGEYIS-----ERELP------------LAIASTPIPL------- 393 +RELEN VERAV+L G + E ELP LA ++ P P+ Sbjct: 365 VRELENLVERAVLLSAGPELEPWDFWEDELPPAGAVTGATDPELAGSANPEPVAAADLAL 424 Query: 394 -GQSQDI-------------QPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 G + D L +VE+++IL AL +T N+T AA+ LGI+ +TL KL Sbjct: 425 AGSNTDAAASAAEIAIDPSRHSLWDVERQMILRALRQTSDNRTHAAKMLGISVRTLRNKL 484 Query: 440 S 440 + Sbjct: 485 N 485 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 363 bits (933), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 213/492 (43%), Positives = 295/492 (59%), Gaps = 61/492 (12%) Query: 8 ILVVDDDIS-HCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ + + +AL RG GY V +A +GR ALE V + DLV+ D+RM EMDGIA Sbjct: 9 ILVVDDEQNMRVALYEALSRG-GYEVKVAENGRMALEMVESEAPDLVVTDIRMPEMDGIA 67 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH--- 123 L++I+A+ P +PV+I+T Y++VETAVEA+K GA+DY++KP + ++ T++K + Sbjct: 68 MLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKVMRQQPR 127 Query: 124 ----THSIDAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + + +P + G ++G+ LL VA S+ATVL+ G+SGTGKE Sbjct: 128 PAAVAPAAETGSPPPGRTDEGSRTVIGRDRHFLRLLERARTVASSKATVLVLGESGTGKE 187 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 + AR IH S R P V LNCAAL E LLESELFGHEKGAFTGA ++G+F A GGT Sbjct: 188 VFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFELAHGGT 247 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 L LDEIG++ +Q +LLR +QE EV R+G + + VDV ++A T+RDLA V G FRQ Sbjct: 248 LLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVKDGTFRQ 307 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNV+ I +PSLR+R +DI LLA F+++ + R K +K + A + YDWPG Sbjct: 308 DLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKHSRRYNKPLKKLSAAARQRFLDYDWPG 367 Query: 357 NIRELENAVERAVVLLTGEYIS-----EREL---PLAIASTPIPLGQSQDIQP------- 401 N+RE+EN +ER V+L G+ + + EL P A A P P G + D +P Sbjct: 368 NVREMENLLERGVLLSNGDELELWDFWDDELPPEPAASAELPEPSGPA-DAEPVDAAEPE 426 Query: 402 ---------------------------------LVEVEKEVILAALEKTGGNKTEAARQL 428 L EVE+++IL AL +T N+T AA+ L Sbjct: 427 ASPPTVATEAVAAEASGSPDSAATLDSALAGRSLREVERQMILQALRQTDDNRTHAAKML 486 Query: 429 GITRKTLLAKLS 440 GI+ +TL KL+ Sbjct: 487 GISVRTLRNKLN 498 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 363 bits (932), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 214/453 (47%), Positives = 292/453 (64%), Gaps = 21/453 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMDGI 65 +LVVDD+ +L GY V +A R A+E +R+ Q F LVL D+ M + GI Sbjct: 15 VLVVDDEPGLRQVLHIAFHRQGYEVVVAPGARAAIEAIRQNPQPFPLVLTDLVMPDGSGI 74 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L KA + A V++MTA+S+VE+A++A++ GA D++ KP L A KAL + Sbjct: 75 EVLTAAKARSNATEVIVMTAHSTVESALDAMRHGAYDFVTKPFSPAELTALAAKALEKS- 133 Query: 126 SIDAETPAVTASQFGM-------VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 SI AE + A + +G S AMQ + IA +AP+ TVL+ G+SGTGKE V Sbjct: 134 SIVAENQRLRAQLERLDLPSREPLGTSAAMQRIAELIAKIAPTRTTVLLTGESGTGKERV 193 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARAIH S R+ +P + +NC AL E+L+ESELFGHEKG+FTGA R G F EADGGTL Sbjct: 194 ARAIHDQSDRAARPFLVVNCGALPEALMESELFGHEKGSFTGAGARSMGLFREADGGTLL 253 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG++ +QV+LLR +QER+V+ VG+ I+VDVR++AAT+RD+ AEV GRFRQDL Sbjct: 254 LDEIGELPAALQVKLLRVLQERKVRPVGAAAEIAVDVRVLAATNRDVEAEVRQGRFRQDL 313 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYRLNV+ IE+P LR+R DI LA FL+RFA K V+G T A+ L Y +PGN+ Sbjct: 314 YYRLNVIRIELPPLRERPGDISRLAERFLRRFAAELGKDVRGLTTDAVRALDAYSFPGNV 373 Query: 359 RELENAVERAVVLLTGEYISERELPLAIA---STPIPL-------GQSQDIQPLVEVEKE 408 RELEN +ERAV L G I +LP A+A ++P PL G + D + + EVE+ Sbjct: 374 RELENMMERAVALAGGPTIGLGDLPSAVAGLSASPAPLLAQLPPEGCALD-EVIGEVERR 432 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +IL ALE+TGG + AA+ LG++ ++L +L++ Sbjct: 433 LILQALERTGGVRKAAAKLLGVSFRSLRYRLAK 465 >UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G869_SORC5 Length = 475 Score = 362 bits (930), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 206/443 (46%), Positives = 287/443 (64%), Gaps = 14/443 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ + L +LR GY A G +AL ++ E D+VL D++M +DGI Sbjct: 7 ILIVDDEANARAALSEILREEGYTTETAADGFKALGKLEEFAPDVVLTDLKMPGLDGIRM 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 +++ + P ++MTA+ ++ +AVEA+K GA +YL KPLDF L +E+A+ + Sbjct: 67 MEKAQLALPDATFVVMTAFGTISSAVEAVKKGAYNYLTKPLDFSVLAVVVERAVERARLL 126 Query: 128 DAETPAVTA----SQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + + FG ++ P+M +L + VAPS A+VLI G++GTGKEL+A I Sbjct: 127 QENSRLRERLRERNAFGHVIASHPSMAKVLRLVEQVAPSRASVLIVGETGTGKELIAEMI 186 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R++ PLV LNCAAL+ESLLESELFGHE+GAFTGA RREGRF +A GGTLFLDE+ Sbjct: 187 HRASPRAKAPLVRLNCAALSESLLESELFGHERGAFTGAVGRREGRFEQASGGTLFLDEV 246 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 +I QV+LLR +QER +RVG N+ + VDVR++AA++RDL + G FR+DLYYRL Sbjct: 247 SEIPLATQVKLLRFLQERTFERVGGNETLKVDVRILAASNRDLRQRIAEGVFREDLYYRL 306 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVV +E+P LR+RR DIP LA FL R+A+ N K ++GFT +A+ L Y +PGN+RELE Sbjct: 307 NVVTLEIPPLRERRSDIPELATFFLGRYAQENGKRIEGFTDEALSALTSYSFPGNVRELE 366 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV------EVEKEVILAALEK 416 NA+ERA VL G I R LP ++S P +S D P V ++E+ IL LE Sbjct: 367 NAIERAAVLCDGARIELRHLPAQMSSEP---AESVDAMPRVPGSTIYDLERYAILRTLEA 423 Query: 417 TGGNKTEAARQLGITRKTLLAKL 439 G+ ++AA LGI+ + + KL Sbjct: 424 CKGSTSKAATILGISPRKIQYKL 446 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 203/445 (45%), Positives = 282/445 (63%), Gaps = 15/445 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+IS L+ +L+ GY + +A SG +ALE++R DL+L D+ M MDG+A Sbjct: 5 ILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMDGLAV 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+EIK + +PV+I++ + ++ETAV+A + GA D++ KPL + + +++ AL H + Sbjct: 65 LEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALDF-HRL 123 Query: 128 DAET-----PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + E A S M G+S A++ L +I AP+ ATVLI G++GTGKEL AR I Sbjct: 124 EEENLLWRQKAHRTSH--MTGRSEAVESLREQIRRAAPTNATVLITGENGTGKELAARMI 181 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S RS +P+V +NCAA+ E L+ESELFGHEKGAFTGA +RR GRF A+GGTLFLDEI Sbjct: 182 HQLSKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANGGTLFLDEI 241 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+S Q ++LR +QE+ +RVG ++ I VDVR++AAT++D+ E+ AGRFRQDLYYRL Sbjct: 242 GDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRFRQDLYYRL 301 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ I VP LR R +DIPLL FL A + K P L Y WPGNIREL Sbjct: 302 NVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQYSWPGNIRELR 361 Query: 363 NAVERAVVLLTGEYISERELPLAIAST-PIPLGQSQDIQ--PLVE----VEKEVILAALE 415 N +ER V++ G+ I R+LPL + P P ++ Q L E E+ +L L+ Sbjct: 362 NFIERMVIMTPGQRIGPRDLPLDFLNRLPKPPEEAGPYQCATLREARSVFERAYLLRKLD 421 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 + N + A Q+G+ R L K+ Sbjct: 422 EFAWNVSLTAAQVGLERSHLHRKMK 446 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 208/457 (45%), Positives = 282/457 (61%), Gaps = 26/457 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILV DD+ S IL +L G GY+V G AL+++ + +D++LCDVRM + DG+ Sbjct: 7 ILVADDEPSIRHILTLVLTGHGYDVRAVADGEDALKELAARDYDVLLCDVRMPKKDGLVV 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+E A +PA+ ++M+AY S E A++A+ GA DY+ KP D + L KA + Sbjct: 67 LREALASHPALTAVVMSAYGSQEQALQAVAAGAFDYVQKPFKPDEIVFVLRKAEERERLV 126 Query: 128 -------DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 A P+ ++G+SPA+ LL ++A +AP + TVLI G+SGTGKEL+AR Sbjct: 127 RENRRLKQASLPSTPGGH--ILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIAR 184 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 +H S R+ V +NC A+ L+ESELFGH KGAFT A + G F EADGGTLFLD Sbjct: 185 ELHVRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGTLFLD 244 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+G++ QV+LLR +QE E++ VG N++ V+VR++AAT RDL+ V G FR+DLYY Sbjct: 245 EVGELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFREDLYY 304 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFA-ERNRK-AVKGFTPQAMDLLIHYDWPGNI 358 RLNVV + VP LR+RRED+PLLA F+ RF E NR+ V G T +A LL Y WPGN+ Sbjct: 305 RLNVVNLRVPPLRERREDVPLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAWPGNV 364 Query: 359 RELENAVERAVVLLTGEYISERELP--LAIASTPIPLGQSQDIQPLV------------- 403 RELENA+ERAV+L +I LP L AS P P G+ P++ Sbjct: 365 RELENAMERAVLLADEPHILPANLPERLWAASPPGPHGEKPHGDPVLQGGGDLSLKRAIR 424 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 E+E+ I AAL KT GN+T AA L I+ + LL K+ Sbjct: 425 ELEESYIRAALRKTKGNRTRAAELLDISHRALLYKIK 461 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 195/456 (42%), Positives = 290/456 (63%), Gaps = 22/456 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD++S L+ LL GY V+ A+ G ALE + + +DL++ D+RM +G+ Sbjct: 4 ILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNGLEL 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L K + P +PV+++TA++S + AV A+K+GA DY+ KP D ++ + AL+ + Sbjct: 64 LVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALSSPQPL 123 Query: 128 DA---ETPAVTASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 A E+ ++F G++G SP M+ + I+ VAP+ A VLI G+SGTGKELVARAIH Sbjct: 124 PAKPGESEVAATNEFEGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVARAIH 183 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S S V + C+A+ ESL ESE+FGH KGAFTGA R G F +A+ GT FLDEIG Sbjct: 184 RLSPASGHEFVPIVCSAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLDEIG 243 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 +++P++Q +LLR +QERE++RVG+ + + +R+I+AT++DL EV AGRFR+DL+YRL Sbjct: 244 ELTPIIQTKLLRVLQEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFYRLA 303 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV I VP LR+R+ D+PLL HFL ++A K + + AM++L+ YD+PGN+RELEN Sbjct: 304 VVPIRVPPLRERKGDVPLLVDHFLAKYARLFNKDIHRISSYAMEVLLDYDFPGNVRELEN 363 Query: 364 AVERAVVLLTGEYISERELPLA---IASTPIPLGQSQD--------------IQP-LVEV 405 +ER V + + I L L+ + P P G + D ++P L ++ Sbjct: 364 IIERGVAMENSQIILPESLTLSGHRRSREPEPAGGTVDDKRQEIAEEVFSRGLEPTLADL 423 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E+E+I+ ALEK G +KT AA L + ++L K+ + Sbjct: 424 EREMIVNALEKAGNSKTRAAELLRTSFRSLRYKIKK 459 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 186/447 (41%), Positives = 291/447 (65%), Gaps = 16/447 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL++DDD + +++ + + G+ SG++ALE + LV+ D+RM ++ G+ Sbjct: 4 ILIIDDDPAMVSVISDICQERGHQTVAYASGQKALESLAVHAPQLVITDLRMDKVGGLDI 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+E + + P PV+++TAY +VETA+EA+K GA DY+ KP D LQ T+++AL + + Sbjct: 64 LRECREVLPQTPVILITAYKTVETALEAMKLGAYDYITKPFKVDELQLTIQRALDNQSLV 123 Query: 128 --DAETPAVTASQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + + ++ ++G S MQ + + IA VA +++T+LI G+SGTGKELVARA+ Sbjct: 124 RENRNLRQIVKEKYRFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVARAL 183 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R +P V +NC+AL E+LLESELFGH+KG+FTGA + + G F EA+GGT+FLDE+ Sbjct: 184 HFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFLDEV 243 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 ++ +Q +LLR +QER+++RVG + + ++VR++AAT+ L ++ G FR+DLYYRL Sbjct: 244 NSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYYRL 303 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 V+ +E+P+LR+R +DIPLL HFLQ+ A + K P+A+++L Y WPGN+RELE Sbjct: 304 AVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVRELE 363 Query: 363 NAVERAVVLLTGEYISERELPLAI---ASTP-------IPLGQSQDIQPLVEVEKEVILA 412 NAVERA L I +LP + A+ P +P+GQ+ D + + E E+ I Sbjct: 364 NAVERACALCDDALIRTTDLPPQVIRHATAPPVEHSGTLPVGQTLD-EYIREQERRYIEE 422 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKL 439 ++ G ++ +AA+ LGI+ TL KL Sbjct: 423 TIKFNGNSREKAAKMLGISMATLYRKL 449 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 361 bits (927), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 190/441 (43%), Positives = 277/441 (62%), Gaps = 6/441 (1%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 I +LV+DD+ L+ +L+ GY+V +SG +AL+ + +Q FD+VL D++M ++DG Sbjct: 2 IKVLVIDDEKITLKNLEHVLKKEGYDVTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDGF 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L++ KAL P V+++T Y++VE AV A+K GA Y+ KP D ++ + +A Sbjct: 62 EILRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYIAKPFKLDIIRKIILEASEKVK 121 Query: 126 SIDAETPAVTASQF----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 F ++ ++ M LL +AP++ VLI G+SGTGKEL AR Sbjct: 122 LKKEVKQLRQQLDFHEKVNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARY 181 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R + P + +NC A +E LL +ELFGHEKGAFTGA+ ++G A G+LFLDE Sbjct: 182 IHLNSLRKKGPFLAVNCGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDE 241 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 I ++S MQ +LLR IQERE R+G+ + I VDVR IAAT+RD+ EV G+FR+DLYYR Sbjct: 242 ITEMSLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYR 301 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV IE+P LR+R++DIPLL +F ++++ +K + G + +A++LL++Y++PGN+REL Sbjct: 302 LNVVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEITGVSEEAINLLVNYEYPGNVREL 361 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD--IQPLVEVEKEVILAALEKTGG 419 EN +ERAVVL I LP + I + ++ L E+EKE I L + G Sbjct: 362 ENIIERAVVLCNSSQIDVEHLPQDLKELKIEVFTKKEGKFMSLEELEKEYIKWILREVGN 421 Query: 420 NKTEAARQLGITRKTLLAKLS 440 NKT AA+ LGI R +L KL Sbjct: 422 NKTVAAQILGIDRVSLWRKLK 442 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 361 bits (927), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 205/445 (46%), Positives = 291/445 (65%), Gaps = 30/445 (6%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVV+DD + L +LR GY +SG AL Q+ + FD+V+ D+++ M G++ Sbjct: 6 LLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLPGMGGLSL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDF-----------DNLQAT 116 L+EIK N +I ++++TAYSS+++AV A+K GA +YL KP+D + Q Sbjct: 66 LQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEELELVLEKLREKQQLV 125 Query: 117 LEKALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 ++ L D T + +VG SP M + I VAPS A+VLI G++GTGKE Sbjct: 126 IQNRLLKEELKDKYTFS------ELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKE 179 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVA AIH S R+ KP V L+CAAL+E +LESELFGHEKGAFTGA + R+GRF ADGGT Sbjct: 180 LVAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGT 239 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDE+ ++S +QV+LLR +++ E +RVG + I VDVR IAAT+R+L EV+ GRFR+ Sbjct: 240 LFLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFRE 299 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNV+ I++P LR+R++DIP+L+ +F ++A++ +K +KGF P+A+ L+ + W G Sbjct: 300 DLFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQG 359 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIAS-------TPIPLGQSQDIQPLVEVEKEV 409 NIREL+N +ERA+VL + IS LP +I IP+G + L E EKE+ Sbjct: 360 NIRELQNTIERAIVLCKSDTISVDHLPESIMPDNEYIPVIKIPIGTT-----LKEAEKEI 414 Query: 410 ILAALEKTGGNKTEAARQLGI-TRK 433 I L+ T G+K AA+ LGI TRK Sbjct: 415 IQRTLQITNGSKQSAAKILGISTRK 439 >UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZNW8_9PLAN Length = 466 Score = 361 bits (927), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 201/439 (45%), Positives = 284/439 (64%), Gaps = 6/439 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ++LVVDD+ + +L G+ A +S +AL+++ +D V+ D++M MDG+ Sbjct: 12 NVLVVDDNARARQSIVDVLEMLGHRGAACSSAHEALKRMETIDYDAVVTDLQMPGMDGLE 71 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 +++I+ + IP++++TA+ SV TAVEA++ GA DYL KPL+ D L+A + + L S Sbjct: 72 LVRQIRRRDAHIPIVMVTAHGSVSTAVEAMRFGAADYLEKPLNADRLEAVVNRVLESAAS 131 Query: 127 IDAETPAVTA--SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 D T A +Q M+G+S AMQ + +IA VAP++ TVLI G+SG GKEL+AR IH Sbjct: 132 GDRATVATPGETNQVAMIGESRAMQQVRQQIAQVAPTDETVLIIGESGVGKELIARTIHE 191 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 SS R+ + L++LNC L+ L+ESELFGH +GAFT AD R GRF A+ GT+ LDEI + Sbjct: 192 SSRRAGRALISLNCPVLSAHLMESELFGHTRGAFTSADSARVGRFELAEQGTILLDEISE 251 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 I +Q +LLR +QER +RVGS++ + DVR++A ++RDL EV AGRFR+DLYYRL V Sbjct: 252 IDLSLQAKLLRVLQERCYERVGSSETLETDVRVLATSNRDLPGEVTAGRFRRDLYYRLAV 311 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 V IE+P LRQRR+DIPLL +FLQ+ A R K V +A+DLL+ +DWPGN+RELEN Sbjct: 312 VPIELPPLRQRRDDIPLLVDYFLQQTAARLEKPVFDMRAEALDLLMRHDWPGNVRELENI 371 Query: 365 VERAVVLLTGEYISERELPLAIASTPI-PLGQSQDIQ---PLVEVEKEVILAALEKTGGN 420 V RA VL IS + ++ G SQD L E+E+ +I A LE G+ Sbjct: 372 VTRACVLAIDGQISADDFSSWLSCEAREETGDSQDAPVGVKLDEMERRLISATLEHYDGH 431 Query: 421 KTEAARQLGITRKTLLAKL 439 + + A LGI+ +TL KL Sbjct: 432 REKTAAALGISPRTLSNKL 450 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 361 bits (926), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 204/450 (45%), Positives = 283/450 (62%), Gaps = 19/450 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD+ L + + G V A+ G + LE +R+ ++L D+ M G+ Sbjct: 18 VLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHTTGMDL 77 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK K + P V++MTAY +VETAV+A+K GA D++ KPL ++ ++ AL S+ Sbjct: 78 LKAAKTVAPETEVVLMTAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRIVKNAL-EKQSL 136 Query: 128 DAETPAVTAS-----QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 E + A ++G S A + + + APS+ATVL+ G+SGTGKEL+AR++ Sbjct: 137 VVENRVLRAQLAEQRSRAVIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARSL 196 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H SAR++KP + +NCAA+ ES+LE ELFG+EKGAFTGA REGRF A GGTLFLDE+ Sbjct: 197 HEGSARADKPFIAINCAAIPESILEGELFGYEKGAFTGATSSREGRFEAASGGTLFLDEV 256 Query: 243 GDISPMMQVRLLRAIQEREVQRV-GSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 G++ +QV+LLR +QE E++R+ GS + +D+RLIAAT+ +LA V GRFR+DLYYR Sbjct: 257 GEMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYR 316 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV++I VP LR+RR+DIPLL HFLQ +A++N K + G T A+D L Y WPGN+REL Sbjct: 317 LNVISIAVPPLRERRDDIPLLVQHFLQVYADKNGKFMAGCTQDALDRLCRYAWPGNVREL 376 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ------------PLVEVEKEV 409 ENAVERAVVL GE + E LP + S L ++ PL E+E V Sbjct: 377 ENAVERAVVLSRGEVLDEAALPFEVRSGEGALAEAAGAGDPGGALRFAVGTPLAEIEMAV 436 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKL 439 I L T G+K AA+ LGI +T+ +L Sbjct: 437 IHETLRHTKGDKRLAAKLLGIATRTIYRRL 466 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 361 bits (926), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 207/462 (44%), Positives = 292/462 (63%), Gaps = 35/462 (7%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+VDD+ LQ L Y+V+LA S +A + Q FD+++ D+RM G+ Sbjct: 5 VLIVDDEKHTREGLQQALVD-SYDVSLAASADEAFNLMDAQPFDVIVTDLRMPGKSGLKV 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 + + A VL+MTAY ++ETAVEA+K GA+D+L KP++ + L+ +++AL Sbjct: 64 IDKALAQPNRPAVLMMTAYGNIETAVEAMKRGAVDFLTKPVNIERLEVLIQRAL------ 117 Query: 128 DAETPAVTASQF-----------GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 A+T V Q G++G SP + ++ + LVAPS AT+LI G+SGTGKE Sbjct: 118 KAKTLEVEVKQLHERLDEKFSFEGIIGNSPKLHEVIDRVKLVAPSRATILIEGESGTGKE 177 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+A+AIH SS+RS P + ++CAAL+E+LLESELFGHE+G+FTGA +RR GRF ADGGT Sbjct: 178 LIAQAIHQSSSRSRGPFLAVHCAALSENLLESELFGHERGSFTGATERRIGRFESADGGT 237 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIG+IS QV+LLR ++ + ++RVG ++ I +DVRL+AAT+R L V G+FR+ Sbjct: 238 LFLDEIGEISASTQVKLLRFLETKSIERVGGSKPIDLDVRLVAATNRTLEQLVRDGKFRE 297 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL++RLNVV I +P LR+R ED+PLL GH++ F+E N P A+ L Y WPG Sbjct: 298 DLFFRLNVVRITMPPLRERAEDVPLLLGHYITAFSEENGVPPLTIEPGALATLQAYPWPG 357 Query: 357 NIRELENAVERAVVLLTGEYISE-------RELPLAIASTPIP---------LGQSQDIQ 400 NIREL N E AVVL G +SE R+ LA A+ P P LG + Sbjct: 358 NIRELRNFCENAVVLRRGRSLSEYDLEPRYRDATLAGATGPAPTPGAPGSTVLGGAVPTS 417 Query: 401 PLV-EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 V E EK ++ AL K+ GN+T+AA +GI+R+TL K+++ Sbjct: 418 FSVEENEKRLLREALIKSRGNRTKAAELMGISRRTLHRKIAQ 459 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 361 bits (926), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 205/453 (45%), Positives = 289/453 (63%), Gaps = 14/453 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 ++ D +L+VDD+ S L+ LL+ G+ A+ GRQ +EQ++E D+VL DVRM Sbjct: 5 LSDDAPRVLIVDDETSILDSLRILLKTEGFVPFTAHGGRQGVEQLQELRPDIVLTDVRMP 64 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++ G+ L + ++P +PV++MTA +++++AV+A+ GA Y+ KP D L A L +A Sbjct: 65 DVSGVQVLSAARQVDPDVPVILMTAQATLQSAVQAVNEGAFYYIQKPFRNDELVAILRRA 124 Query: 121 LAHTHSIDAETPAV---------TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDS 171 H + AE + ASQ +G+S + +L VAP+++TVLI G+S Sbjct: 125 AEH-RKLRAENQVLKQEIRRRERNASQRP-IGRSKSWLEVLRLAETVAPTDSTVLITGES 182 Query: 172 GTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE 231 GTGKE+VAR IH SAR++ +++NC AL ESLLESELFGH KG+FTGA K + G F Sbjct: 183 GTGKEVVARYIHDLSARTDNGFMSINCGALPESLLESELFGHVKGSFTGAVKDKTGLFAA 242 Query: 232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNA 291 A+ GT FLDEIG+ +P QV+LLRA+Q+REV VG+ + +SVD R++AAT+RDL E+ Sbjct: 243 ANHGTFFLDEIGETTPSTQVKLLRALQQREVIPVGATESVSVDTRVLAATNRDLEEEIKR 302 Query: 292 GRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 G FR DL+YRLNV+A+ +P LRQR +DIP+LA FL R A + K A+D L+ Sbjct: 303 GGFRADLFYRLNVIAVHLPPLRQRADDIPVLAESFLARSATLRHEEQKVLNEGALDALMA 362 Query: 352 YDWPGNIRELENAVERAVVLLTGEYISERELPLAI-ASTPIPL-GQSQDIQPLVE-VEKE 408 Y WPGN+RELENA+ERAV+L +G IS LP + A PL + + P +E +E+ Sbjct: 363 YGWPGNVRELENALERAVILCSGNTISADALPERVTARRAEPLVSERAPVSPTLEAIERA 422 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I L+ GGNK+ AA LGI TL KL+R Sbjct: 423 YIQWVLQNEGGNKSRAADMLGIDPSTLYRKLAR 455 >UniRef50_D2R521 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R521_9PLAN Length = 474 Score = 361 bits (926), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 208/445 (46%), Positives = 289/445 (64%), Gaps = 13/445 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+ + +LR G +V + S +AL+++ Q FDL+L D++M MDG+ Sbjct: 14 ILVVDDNARARQSMCDVLRHAGNDVQMCASAIEALQKLPSQEFDLILTDLQMPGMDGLQF 73 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 ++ ++ V+++TA++SV +AVEA++ GALDYL KP D D L+ +++ALA Sbjct: 74 IRALQDRKIDSQVVMVTAFASVSSAVEAMRHGALDYLEKPFDADQLEQLVQRALARGRRG 133 Query: 128 DAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 A + ++SQ M+G S AMQ L S+IA+ AP+ TVLI G+SGTGKELVAR +HA Sbjct: 134 AAHSAVTSSSQPWHSMMIGTSSAMQRLRSQIAVAAPTGETVLISGESGTGKELVARCVHA 193 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 +S R+ K LV+LNC AL+ L+ESELFGHE+GAFT AD R GRF ADGGT+ LDEI + Sbjct: 194 ASGRATKALVSLNCPALSPQLMESELFGHERGAFTSADAPRVGRFELADGGTILLDEITE 253 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 I +Q +LLR +QE+ +RVGS++ + VDVR+IA T+R++ EV AGRFRQDL+YRL V Sbjct: 254 IELPLQAKLLRVLQEKSFERVGSSETLEVDVRVIATTNREIRQEVVAGRFRQDLFYRLAV 313 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 V + VP+LR RRED+PLL HFL A R ++ A DLL Y WPGN+RELEN Sbjct: 314 VPLVVPALRDRREDVPLLVEHFLGAAAVRLERSPITVDRAASDLLCSYHWPGNVRELENL 373 Query: 365 VERAVVLLTGEYISEREL------PLAI--ASTPIPLGQS--QDIQPLVEVEKEVILAAL 414 + RA +L T E +S +L P A+ A + G+S Q L ++E+ +I A L Sbjct: 374 MTRASILATSEKLSADDLRSWLLEPEAMHSAGSGNSSGESELQAGMKLEDMERRLIEATL 433 Query: 415 EKTGGNKTEAARQLGITRKTLLAKL 439 + G++ AA+ LGI +TL KL Sbjct: 434 DHYEGHRARAAQALGIGIRTLSNKL 458 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 360 bits (924), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 194/439 (44%), Positives = 269/439 (61%), Gaps = 7/439 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 + +VDD+ C L L GY V S R LE + ++ FD+V D+R+ +MDG+ Sbjct: 6 VAIVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDMDGLEL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L +IKAL P V+I+T Y S++TA+EA++ GA Y+ KP++F ++A +A + Sbjct: 66 LPKIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIARRA-QEKIGM 124 Query: 128 DAETPAVTASQFG------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 E + + G +VG SPA+Q L + + VAP + VLI G+SGTGK LVA A Sbjct: 125 RMENARLREALLGSSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKALVALA 184 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S R +P VT NC E L+ SELFG+EKGAFTGA + G A GGT+FLDE Sbjct: 185 LHHLSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTVFLDE 244 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 +G++ MQVRLL +QER + RVG + + +D+R+IAAT+RDL AEV G FR+DL++R Sbjct: 245 VGEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFREDLFFR 304 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV+ +P L RREDIPLL HF+ ++ RK+V+G QA+ L Y +PGN+REL Sbjct: 305 LNVVSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGNVREL 364 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNK 421 EN +ERAV L G+ I +LP I + + + L EVE+ ++ LEKTG NK Sbjct: 365 ENIIERAVALTDGQTIGLLDLPEDIRNLEFATLEGDGLPTLAEVERRYVIRILEKTGYNK 424 Query: 422 TEAARQLGITRKTLLAKLS 440 AA+ LG+ R TL KL Sbjct: 425 RLAAQVLGVPRTTLWRKLK 443 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 360 bits (924), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 193/449 (42%), Positives = 288/449 (64%), Gaps = 16/449 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+ T L+ +L G GY V A +GR A++ + + FD+V+ D++M DG Sbjct: 4 ILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMELADGYDV 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK+++ + PV+I+TA+ S+++AVEA+K GA DY++KP ++++ T+ L H S+ Sbjct: 64 LKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNILEH-GSL 122 Query: 128 DAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 E A+ +VG S AM + I AP++A ++I G+SGTGK L+A A Sbjct: 123 RLENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEKAAPTKANIMITGESGTGKGLLAEA 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H +S R +KP + +NCAA+ E+LLESELFG++KGAFTGA+ + G ADGGTLFLDE Sbjct: 183 VHQNSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITMADGGTLFLDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ ++Q ++L+ ++ EV +G + +VD+R+I+AT++DL + + FR+DLYYR Sbjct: 243 IGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIREKTFREDLYYR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV+ I +P+LR+RREDIPLLA F++ K VKGF AM ++ Y WPGN+REL Sbjct: 303 LNVIEIRMPALRERREDIPLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMAYPWPGNVREL 362 Query: 362 ENAVERAVVLLTGEYISERELPLAIA---STPIPLGQSQ--DIQPL----VEVEKEVILA 412 +N VERAV+ GE I+ ELP I +T P G ++ +QPL + EK++I+ Sbjct: 363 KNVVERAVIFAGGEQITPAELPAKIRRGDATAGPGGNTEVSGLQPLKAMVYDYEKDIIIN 422 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL + G+K A+ LGI TL K+S+ Sbjct: 423 ALNRFDGSKEMVAKTLGIDLTTLYRKMSK 451 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 359 bits (922), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 193/452 (42%), Positives = 286/452 (63%), Gaps = 16/452 (3%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMD 63 N ILVV+D + L + GY+V +SG A++++ + V+DLV+ D++M +++ Sbjct: 4 NYKILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVYDLVVTDLKMKKVN 63 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ L +K NPA V+++TAY ++ TAV+A++ GA DY+ KP + + + AL Sbjct: 64 GLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNALEK 123 Query: 124 TH------SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 ++ E + G++G S M +L A V+ +E+TVLI G+SGTGKEL Sbjct: 124 KELKERLKYLEGEVREKYKLE-GIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKEL 182 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 +ARAIH + RS P V +NC AL E+L ESELFGH KG+FTGA K + G F A GT+ Sbjct: 183 IARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKGTI 242 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG+ S QV+LLR +Q+ E+++VG N+ I VDVR+IAAT+ +L VN GRFR+D Sbjct: 243 FLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRKD 302 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YR+NV+ I +P L++R+EDIPLL +FL+ + ++ +K + F+ AM +L++YDWPGN Sbjct: 303 LFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWPGN 362 Query: 358 IRELENAVERAVVLLTGEYISERELPLA----IASTPIP----LGQSQDIQPLVEVEKEV 409 IREL+N VERAV L + I LPL +A P +S ++ L E EK Sbjct: 363 IRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKSSIVETLSEQEKNA 422 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I+ A+ K GGN+T+ ++ LGI+ TL K+ + Sbjct: 423 IVEAMNKYGGNQTKVSQVLGISTTTLWRKIKK 454 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 359 bits (921), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 206/470 (43%), Positives = 292/470 (62%), Gaps = 42/470 (8%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+D++ +LQ++ + V AN+ +A Q++ + FDL++ D+R+ + DG Sbjct: 6 ILIVEDELVVRNLLQSIFQRHKLPVTCANNLAEATAQLQREQFDLMMLDIRLPDGDGQKF 65 Query: 68 LKEIKALNPAIPVLIM-TAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA-----L 121 L+++ A+ P P+++M T Y SVE+AV ++ GA DY++KP + L+KA L Sbjct: 66 LEQVAAM-PERPLVVMVTGYGSVESAVGCMRAGAFDYVLKPFSPSQIDVILKKAQTYRQL 124 Query: 122 AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + + ++ P + +VG+SPAM L I VAP++ATVLI G+SGTGKE+VAR Sbjct: 125 LRVNRLLSDDP--EDEEGILVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVARE 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 + S R + + +NCAA++E+L+ESE FGHE+GAFTGA +RREGRF A GTL LDE Sbjct: 183 FYRRSPRRSQAFIKVNCAAISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLLDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 + +I +Q +LLR +QERE +RVG ++ I V+VR+IA ++RDL V G FRQDLYYR Sbjct: 243 VSEIPANLQAKLLRVLQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLYYR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV + VP+LR+R EDI LLA HFL+RFA ++ V GF A LI Y WPGN+REL Sbjct: 303 LNVFPVHVPALRERPEDIALLADHFLRRFARKHGVKVTGFADSARAALIGYRWPGNVREL 362 Query: 362 ENAVERAVVL-------------LTGEYISERELPLAIASTP------------IPLGQS 396 +N VERAV+L L G+++ ELPL A P P G S Sbjct: 363 QNTVERAVILSETGRAVTAAALGLPGDFLPG-ELPLEPAPAPEVPALPVAAVAEEPAGAS 421 Query: 397 QDIQ-------PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 + L E+EK+ I AAL +TGGN+T+AA +LGI+ +TL KL Sbjct: 422 PTVTDSHGQVLKLDELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKL 471 >UniRef50_C7LX78 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX78_DESBD Length = 446 Score = 359 bits (921), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 208/447 (46%), Positives = 280/447 (62%), Gaps = 16/447 (3%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 N ILVVDD+I + + +LR G++V A S ALE + + D+V+ DVRM G Sbjct: 2 NRSILVVDDEIRYRELYARVLRDAGFDVHEAGSAADALEFMDRRTPDMVVSDVRMPAESG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L+ ++A P +P L++TAY+ V AV+ALK GA+DYL KP+D D L A + L Sbjct: 62 LDLLRRVRAEKPELPFLLVTAYADVREAVDALKLGAVDYLAKPVDLDELLAAVRDTLGVG 121 Query: 125 HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 E PA AS G+V +S AM+ +L + VAPS+AT+L+ G+SG+GKE+VA+ IH Sbjct: 122 AGAGGEIPA--ASLTGIVAESLAMRSVLRDAYRVAPSDATILLTGESGSGKEIVAQFIHR 179 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 SARS KPLV +NCAA+ +LL SELFGHEKGAFTGA +R+G F EA GTLFLDEIGD Sbjct: 180 HSARSAKPLVPVNCAAIAPTLLASELFGHEKGAFTGAVTKRKGYFREAHEGTLFLDEIGD 239 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + +Q LLRA + + VGS++ +D RLIAAT+ DL +V GRFRQDLYYRLNV Sbjct: 240 MPLELQPSLLRATETGRITPVGSDKETVIDCRLIAATNHDLETDVAEGRFRQDLYYRLNV 299 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 + I++P LR+R EDIP LA FL +++ + + AM LI + WPGN+REL NA Sbjct: 300 ITIDIPPLRERPEDIPPLARLFLN----KDKTEARRLSRAAMQTLISHPWPGNVRELANA 355 Query: 365 VERAVVLLTGEYISERELPLAIASTP--------IPLGQSQDIQ--PLVEVEKEVILAAL 414 + +L + I LP A+ + IP+ Q Q L + E E + AAL Sbjct: 356 MAHVRLLSQTDVILPEHLPPAVRKSAGKAAPESRIPVEQDAPAQTKTLEQHEIEAVTAAL 415 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 + T GN+T AA+ LGITR+ L+ KL R Sbjct: 416 KHTKGNRTHAAQLLGITRRGLIYKLKR 442 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 359 bits (921), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 182/455 (40%), Positives = 284/455 (62%), Gaps = 26/455 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+VDD+ C +L+ +L G+ + LA + + AL+ + + D VL D+R+ + DGI Sbjct: 4 VLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDALKIMETEFPDTVLLDIRLPDADGIEV 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT--- 124 + ++K + +PV++MTA+ + E A++A+K GA DYL KPL+ D L ++K++ Sbjct: 64 MDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIKMQRLV 123 Query: 125 -------HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 +D ET +V + +G+S MQ + I V S+ TVLI G+SGTGKE+ Sbjct: 124 SEVAILREELDQETDSVDS----FIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEV 179 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VAR IH++S RS +P + +NCA + E L+ESELFGHEKG+FTGA ++ G+F A G + Sbjct: 180 VARTIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIV 239 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG++ Q +LLR +QE+E +RVG + I VDVR++AAT+R+L V G+FR+D Sbjct: 240 FLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFRED 299 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRLNVV +++P LR+R+EDI LL +F+++FA + K + G + +AM Y WPGN Sbjct: 300 LYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWPGN 359 Query: 358 IRELENAVERAVVLLTGEYISERELPL-----------AIASTPIPLGQSQDIQPLV-EV 405 +RE++N E+AVV+ + ++PL A + + ++ +V EV Sbjct: 360 VREIKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLDTNDKRSLKDIVAEV 419 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 EK+VIL +L + N+ A+ LG+ R++L AK+ Sbjct: 420 EKQVILKSLNENNWNRQNTAKALGLNRRSLYAKMK 454 >UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobacteria RepID=YFHA_ECO57 Length = 444 Score = 358 bits (918), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 198/446 (44%), Positives = 276/446 (61%), Gaps = 17/446 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+H +L+VDDD +L L GY+V A SG + L + + DLV+ D+RM Sbjct: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L KP+D D L ++ A Sbjct: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 Query: 121 LAHTHSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 L + PA + +V +SP M LL + LVA S+ +VLI+G SGTGKE+ A Sbjct: 121 LEQS------APATDERWREAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFA 174 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 +AIH +S R+ KP + +NC AL E LLESELFGH +GAFTGA REG F A+GGTLFL Sbjct: 175 QAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFL 234 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ +QV+LLR +QER+V+ +GSN+ I ++VR+I+ATHRDL + G FR+DLY Sbjct: 235 DEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLY 294 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVV++++P+L +R EDIPLLA H L++ AER++ V+ F+ AM L+ WPGN+R Sbjct: 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVR 354 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK--- 416 +L N +E+ V L + IS+ + A+ G++ + VE + L L K Sbjct: 355 QLVNVIEQCVALTSSPVISDALVEQALE------GENTALPTFVEARNQFELNYLRKLLQ 408 Query: 417 -TGGNKTEAARQLGITRKTLLAKLSR 441 T GN T AAR G R LSR Sbjct: 409 ITKGNVTHAARMAGRNRTEFYKLLSR 434 >UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIN5_9BACT Length = 431 Score = 358 bits (918), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 196/436 (44%), Positives = 286/436 (65%), Gaps = 12/436 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + IL+VDD+ +H +L+ L G+ A A +G +ALE + E FD++L D++M MDG+ Sbjct: 1 MKILIVDDEKNHRMMLKLHLEDAGHKTAQAENGLKALEALDEGRFDVILLDMKMDVMDGL 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L + ++PV+++TA+S+V+TAVE++K GA+DYL KP+D L LEK + Sbjct: 61 TFLGMMNRKGHSVPVIVITAFSTVKTAVESMKLGAVDYLTKPVDIPQLMDALEKI--NEQ 118 Query: 126 SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 S D TP V +FG V + ++ ++ LVAP++ATVLI G+SGTGKE+VAR+IH + Sbjct: 119 SGDVLTP-VENYRFGGVYTQEGLGSIIEQLKLVAPTDATVLILGESGTGKEIVARSIHDN 177 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S R+++P + +NCAAL+E+++ESELFGH KGAFT A K +G F ADGGTLFLDEIG++ Sbjct: 178 SKRAQRPYLAINCAALSENIIESELFGHVKGAFTTAVKDNKGLFEAADGGTLFLDEIGEL 237 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 S +Q +LLR +QE +RVG + + +VR++AAT+R+L G FR+DLY+RL V Sbjct: 238 SLNVQAKLLRVLQEGAFERVGDTRTLKTNVRIVAATNRNLKKLSEKGDFREDLYFRLAVF 297 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 +EVP LR+R+E+I L F+ + AE+ K +K P + L Y +PGNIRELEN V Sbjct: 298 PVEVPPLRERKEEIAPLVKFFIDKHAEKLGKLIKSADPAYIRKLSDYGFPGNIRELENIV 357 Query: 366 ERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE-VEKEVILAALEKTGGNKTEA 424 ER+++L TG + LP G +D + E+++I+ AL+KTGGNKT+A Sbjct: 358 ERSIILTTGTKLEPVTLP--------AFGTERDGGLSIRGNERDLIIKALKKTGGNKTKA 409 Query: 425 ARQLGITRKTLLAKLS 440 A L I+R+TL KL Sbjct: 410 AEILQISRRTLHNKLK 425 >UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=Enterobacteriaceae RepID=D0ZDB7_EDWTE Length = 446 Score = 357 bits (916), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 199/438 (45%), Positives = 270/438 (61%), Gaps = 14/438 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+VDDD S +L L G+ V A SG++AL + DLV+ D+RM EMDG+A Sbjct: 9 LLLVDDDPSLLKLLGMRLSSEGFRVTTAASGQEALRLLARDPIDLVISDLRMDEMDGLAL 68 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 EI+ P +PV+I+TA+ S+ AV A + G +L KP+D D L ++ ALA + Sbjct: 69 FSEIQRRQPGLPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYRAIDDALAQSMPQ 128 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 + A + V +SP M LL + +VA S+ +VLI+G SGTGKEL+ARAIH +S Sbjct: 129 GGDD----AWRQAFVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKELLARAIHRASP 184 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 R+ K + +NC AL E LLESELFGH KGAFTGA REG F A GGTLFLDEIGD+ Sbjct: 185 RAGKAFIAINCGALPEQLLESELFGHAKGAFTGAVSSREGLFQAAAGGTLFLDEIGDMPL 244 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 +QV+LLR +QER+V+ +GSN+ + +DVR+I+ATHR+L + G FR+DL+YRLNVV++ Sbjct: 245 TLQVKLLRVLQERKVRPLGSNRDLDIDVRIISATHRNLPKAMELGEFREDLFYRLNVVSL 304 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 +P+L QR EDIPLLA H L++ AER++ V+ F+ AM L+ WPGN+R+L N +E+ Sbjct: 305 RLPALNQRPEDIPLLAAHLLRQAAERHKPLVRSFSSGAMKALMSASWPGNVRQLVNVIEQ 364 Query: 368 AVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK----TGGNKTE 423 V L T I E + A+ G++ + VE L L K T GN T Sbjct: 365 CVALTTAPVIGEALVEQALQ------GENTALPTFVEARHHFELHYLRKLLQITKGNVTH 418 Query: 424 AARQLGITRKTLLAKLSR 441 AAR G R LSR Sbjct: 419 AARMAGRNRTEFYKLLSR 436 >UniRef50_A0LM32 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LM32_SYNFM Length = 450 Score = 357 bits (915), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 200/441 (45%), Positives = 263/441 (59%), Gaps = 10/441 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + +LVVDD+ L R GY A+ GR ALE V + +DLV D++M ++ G Sbjct: 5 LKVLVVDDEKIVRESLVEWFRKSGYEADSADGGRSALEMVAGKDYDLVFLDIKMPDVSGF 64 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L IKA P V+++TAY SVETAV+A+K GA DYL+KP D D L LE+ L Sbjct: 65 EVLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLERLLQQKK 124 Query: 126 SIDAETPAVTASQFGM-----VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 +D GM +G S MQ L + I VA ++ +L+ G++GTGKE+VA+ Sbjct: 125 IVDENAMLREHISSGMHCRELIGVSNCMQQLFALIEQVAQVDSPILLRGETGTGKEMVAK 184 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIHA S R P V +NC A E+LLESELFGHE AFTGA + ++GR A GGTLFLD Sbjct: 185 AIHAMSERRGGPFVPINCGAFAETLLESELFGHESRAFTGAGRAKKGRLEMASGGTLFLD 244 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+G+I MQ+ LLR ++E+ RVG ISVD RLI ATH+DLA E+ G FRQD YY Sbjct: 245 EVGEIPLKMQIDLLRVLEEKAFTRVGGISEISVDFRLICATHKDLAMEIERGAFRQDFYY 304 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ +E+P L R +DIP+LA FL+R + K V G Q ++ L Y WPGN+RE Sbjct: 305 RLNVIEVEIPPLHARIDDIPVLAQCFLERIGKETNKPVVGIRQQGIEFLKSYPWPGNVRE 364 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 LENA+ERAVVL Y++ + S P QS L E EK+ + L G N Sbjct: 365 LENAIERAVVLAKERYLTRDDFAFLCRSPAQPFPQS-----LRENEKQHLERILSFCGWN 419 Query: 421 KTEAARQLGITRKTLLAKLSR 441 ++AA L I+R TL +K+ + Sbjct: 420 ISKAAAILEISRVTLHSKIRK 440 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 357 bits (915), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 189/454 (41%), Positives = 284/454 (62%), Gaps = 31/454 (6%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ S C L +L GY V SG +A+ + E + +VL D+ + +DG+ Sbjct: 5 ILIVDDEESICKSLGDILVDEGYEVQTVQSGEEAIRLLDEDLPGIVLLDIWLPGIDGMEV 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK IK+L+P +PV++M+ + ++ETAV+A K GA D++ KPL + + TL+ AL + Sbjct: 65 LKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSLEKIILTLKHALDLSR-- 122 Query: 128 DAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 E V Q + + GKSP + L+ I++VAP+ A +LI G++GTGKELVARAI Sbjct: 123 -LEEENVLLKQKINRDYELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVARAI 181 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R++KP+V +NCAA+ E L+ESELFGHEKGAFTGA +++ G+F A GT+FLDE+ Sbjct: 182 HRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFLDEV 241 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 D+S Q ++LR +QE++ +RVG N++I +DVR++AAT++DL E+ GRFRQDL+YRL Sbjct: 242 ADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLFYRL 301 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ ++VP LR R+EDIPLLA FL FA + + K A+ LL+ + WPGN+REL+ Sbjct: 302 NVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLMEHSWPGNVRELK 361 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPL----------------VEVE 406 N +ER ++ T I+ ++P P+P ++P ++ E Sbjct: 362 NFIERLAIMTTSNVITVHDIP------PLP-RDGHKVEPFREPGFELLAGSFREAKMDFE 414 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 K+ I L + GN ++ A +G+ R L K+ Sbjct: 415 KQYISRKLREFDGNISKTAESIGLERSNLHKKIK 448 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 356 bits (914), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 202/455 (44%), Positives = 284/455 (62%), Gaps = 28/455 (6%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ++LVVDD+ + +L A+L GY V A +G QALE V +Q FD +LCD++M MDG+A Sbjct: 10 NVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPRMDGLA 69 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L P V++M+AY +++TAVEALK GA DY+ KP D + L+KA + Sbjct: 70 FLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKA-SERER 128 Query: 127 IDAETPAVT--------ASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 + E A+ FG ++ KS AMQ + I VA + TVL+ G+SGTGKEL Sbjct: 129 LKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGTGKEL 188 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VAR++H +S R+ L+ +NC + E+LLESELFGH KGAFTGADK + G A GTL Sbjct: 189 VARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGLCEIAHKGTL 248 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG++ +QV+LLR +Q+RE++ VG++ ++D+R++AAT R+L A+V G FR+D Sbjct: 249 FLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADVAEGVFRED 308 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRLNV+ I +P LR R+EDIPLL F+Q F ++ K + G P A+ L+ + WPGN Sbjct: 309 LFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAPAALSRLLAHTWPGN 368 Query: 358 IRELENAVERAVVLLTGEYISERELPLAI----ASTP---------IPLGQSQDIQPLVE 404 +RELEN +ERAVVL G+ I+ +LP A P + +Q I Sbjct: 369 VRELENLIERAVVLAEGDTITPDDLPPGFGTDSAGGPGDALAGFDGYSIKAAQKI----- 423 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 EK +I AL KTGGN+T ++ L I+ +LLAK+ Sbjct: 424 FEKRLIEKALAKTGGNRTRTSKLLEISHPSLLAKM 458 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 356 bits (913), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 189/456 (41%), Positives = 286/456 (62%), Gaps = 28/456 (6%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+VDD+++ +LQA+L+ GY VA A G +ALE + ++ D+V+ D++M ++ G+ Sbjct: 4 VLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGLGL 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL-----A 122 L+ + + P PV+I+TA+ ++ETAV+ALK GA DY+ KP D D L + +EKA+ Sbjct: 64 LEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTRIKN 123 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 H I AE ++G+VG S ++ + I VA ++ T+LI G++GTGKEL+A AI Sbjct: 124 HGEVILAEE---EIDKYGIVGCSEKIREIYKTIEKVASTKTTILITGETGTGKELIAHAI 180 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R + + +NC A+ ++L+E+ELFG+EKGAFTGA + G+F AD GT+FLDEI Sbjct: 181 HRGSPRKDNAYIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQGTIFLDEI 240 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G+I MQV+LL+ +Q++ +RVG + I VDVR+IAAT+RDL E+ G FR+DLYYRL Sbjct: 241 GEIPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFREDLYYRL 300 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVV I++P LR+R+EDI L +FL RF ++ +KG PQ ++ Y+WPGNIRELE Sbjct: 301 NVVPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECFKKYNWPGNIRELE 360 Query: 363 NAVERAVVLLTGEYISERELPLAIASTP---IPLGQSQDIQPLVE---------VEKEVI 410 N +ER ++L G IS ++P I + +P + + P E E+ V+ Sbjct: 361 NLIERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFEEYLLREMENFTERLVL 420 Query: 411 LAALEKT--GGNKTE------AARQLGITRKTLLAK 438 +A EK G++ E + G+ RK + +K Sbjct: 421 MARSEKKREAGDRLEEDSLDSTEKDQGVYRKFIKSK 456 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 355 bits (911), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 193/456 (42%), Positives = 283/456 (62%), Gaps = 27/456 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDDD + + +R G +V +A G++ E+ + +DL++ D+RM +DG+ Sbjct: 8 ILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMPNVDGMTM 67 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 + I++ P+ +TA+ +V AV+ALK GA DY++KP + ++ + + L I Sbjct: 68 MNMIQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRVL----EI 123 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 + PAV + + +S M L S VA SEATVLI G+SGTGKE+ AR IH +S Sbjct: 124 EETAPAVKRKKNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFARYIHENSN 183 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 RS V +NCAAL E+L+ESELFG+EKGAFTGA R+ G+F ADGGT+ LDE+G+I Sbjct: 184 RSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLDELGEIPL 243 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 +Q +LLR +QE+EV+R+G + ++VR++A T++ L EV+ G FR+DLYYRLNV++I Sbjct: 244 HLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYYRLNVISI 303 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 E+P LR+R+EDI LA F +++A+ N K T A+ L+ YDWPGN+RELE+ +ER Sbjct: 304 ELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWPGNVRELEHTIER 363 Query: 368 AVVLLTGEYISEREL---------------PLAIASTPIPLGQSQD--------IQPLVE 404 AVVL ISER L LA A + ++D + E Sbjct: 364 AVVLCRDGVISERNLFLHGITINQFMTDKQELAAADSYTGCETTEDSVSAGIDFAGTIAE 423 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +E+E+I+ L++TGGN+T+AA LGIT +TL KL+ Sbjct: 424 MERELIIKTLKETGGNRTKAADMLGITVRTLRNKLN 459 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 355 bits (911), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 196/449 (43%), Positives = 288/449 (64%), Gaps = 16/449 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ ++ +L LL G++V A++ AL+ + + DL++ D++M M GI Sbjct: 4 ILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQIDLIISDLKMPRMSGIDF 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ + +P +++TAY++V+TA++A+K GA DYL+KP D + + T++KAL ++ + Sbjct: 64 LRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKALDYS-KL 122 Query: 128 DAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 E + +VG SPAM+ L ++IA VAP++ ++LI G+SGTGKELVA+A+ Sbjct: 123 QNENWLLRRELEQNRDRTLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQAL 182 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S RS K LV++NCAA E+LLESELFGHE+GAFTGA +R++G +DGGTLFLDEI Sbjct: 183 HRLSPRSNKALVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLDEI 242 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G+ +Q +LLR +QE+ +RVG IS D+R+IAATHR+L + G FR+DLYYRL Sbjct: 243 GEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYRL 302 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVV++ +P LR RREDIPLL+ FL+R + + + QA L HY+WPGN+REL+ Sbjct: 303 NVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVRELQ 362 Query: 363 NAVERAVVLLTGEYISERELPLAIAS-TPIPLGQSQDI-----QPLVE----VEKEVILA 412 N +ER ++ G + + LP S P G S+ QPL E +E+++I A Sbjct: 363 NILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGCSETAAMPLQQPLPEHLETIEQKLIQA 422 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL G + +AA LGI+R L KL + Sbjct: 423 ALIDARGVQAKAAELLGISRSNLQYKLKK 451 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 355 bits (910), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 202/457 (44%), Positives = 282/457 (61%), Gaps = 35/457 (7%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+ S L LL+ GY V + G+QA+ ++EQ +DL++ D++M +DG Sbjct: 30 ILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRLDGFGL 89 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT--H 125 L +K + ++++TA+S+ E AV+A+K GA DY+ KP + ++ +E AL Sbjct: 90 LDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVENALERMDLR 149 Query: 126 SIDAETPAVTASQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + + +F ++GKS MQ + I V+ S+ VLI G+SGTGKELVARAI Sbjct: 150 RENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKELVARAI 209 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R ++P V + C A+ E+LLESELFGHEKGAFTGA ++++G F ADGGTLFLDEI Sbjct: 210 HYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTLFLDEI 269 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 ++ PMMQV+LLR IQE E ++VG + + VDVRL+AAT++DLA V +FR+DLYYRL Sbjct: 270 AELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYYRL 329 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ----AMDLLIHYDWPGNI 358 NV+ + +P LR RREDIPLL HFLQ K GF+ M + Y WPGNI Sbjct: 330 NVIQVGLPPLRDRREDIPLLVSHFLQ-------KLTPGFSTTIPDGVMRRFLDYHWPGNI 382 Query: 359 RELENAVERAVVLLTGEYISERELP---LAIASTPIPLGQSQDIQPLVE----------- 404 RELEN VER VVL I+E LP L I+ T Q + L E Sbjct: 383 RELENTVERCVVLGGKGEITEDSLPPHMLCISGTG-----DQQLTELPEEGLDLDDYLGA 437 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +EK+++L AL++TGG + AA L IT +++ +L++ Sbjct: 438 IEKDILLKALDRTGGVRKRAAELLHITFRSIRYRLAK 474 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 354 bits (908), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 179/445 (40%), Positives = 275/445 (61%), Gaps = 18/445 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 I+++DD+ ++ GY +ALE++ DL++ D++M + DG Sbjct: 7 IVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEIYRLQPDLIITDIKMPQCDGFEV 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L++ K P V+++T Y+SV++AV+A+K GA DYL KP + LQ T+ KAL H Sbjct: 67 LEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTINKALQHIALT 126 Query: 128 DAETPAVTASQFGM-----VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + Q G+ +G +Q + I ++ S+A++LI G+SGTGKE++ARAI Sbjct: 127 EENQLLRAQLQEGLNTDNIIGARGGLQDVFETIGKISNSDASILILGESGTGKEVIARAI 186 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S RS P + ++CA+L E+LLESELFG+E+GAFTGA+ ++G A GGTLFLDE+ Sbjct: 187 HKNSRRSTGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLLEMAHGGTLFLDEL 246 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G+++P MQ +LLR ++ER ++RVG N++I++D+R++AAT+RDL + A FR+DLYYR+ Sbjct: 247 GELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAIRAKEFREDLYYRI 306 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ +++P L +R++DIPLL HF ++F++ K V GFTP+AM + Y WPGNIREL Sbjct: 307 NVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAMKSYAWPGNIRELR 366 Query: 363 NAVERAVVLLTGEYISERELPLAIAS------------TPIPLGQSQDIQPLVEVEKEVI 410 N VERA+ L E + +LP + +++DI L E E + Sbjct: 367 NVVERAISLSGSEMVEISDLPEKVIGGQKKILPEQENLGAFSFHEAKDI-CLKRFEMEYL 425 Query: 411 LAALEKTGGNKTEAARQLGITRKTL 435 L+K GN T+AA+ G+ RKT+ Sbjct: 426 KELLDKHHGNITQAAKSAGMDRKTI 450 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 353 bits (906), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 180/438 (41%), Positives = 282/438 (64%), Gaps = 9/438 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDDD +++ L+ +GY + +S +AL +++++ FDL+L D M E+ G+ Sbjct: 5 ILIVDDDRDILNLMKLKLKNYGYTIFTESSPVEALNRIKDEHFDLILVDQLMPELSGLEF 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 + +K + PV++MTAY S+E AV A+K GA Y+ KP++F+ L+ +++AL + Sbjct: 65 IDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINFEELKIIIDQALEVSDLK 124 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 + ++ +SP M+ +L +AP + TVLI G+SGTGKE++A IH +S Sbjct: 125 KELNELKSLLSTDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIHKNSL 184 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 R E+P + +NC A+ LLESELFG++KGAFTGA+ ++G EA+GGTLFLDEIG++ Sbjct: 185 RKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDEIGELPL 244 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 +QV+LLR +QE E++ +GSN+ +DVR IAAT+RDL V G+FR+DLYYR+NV+ I Sbjct: 245 DLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRINVIPI 304 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 +P LR+R+EDI LA +F+ +F R K + +A + L++YD+ GN+RELEN +ER Sbjct: 305 HIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDYKGNVRELENIIER 364 Query: 368 AVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEV----ILAALEKTGGNKTE 423 AV+ GE I+ ++P+ ++ I SQ+++P E +KE + LEKT N ++ Sbjct: 365 AVLTTEGEEIT--DIPVTVSKRYI---LSQELKPFKEAKKEFEESYLKNLLEKTDFNISK 419 Query: 424 AARQLGITRKTLLAKLSR 441 A++ GITR + + R Sbjct: 420 ASKIAGITRAQIYRMIKR 437 >UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulator Nla19 n=6 Tax=Myxococcales RepID=Q1DDD5_MYXXD Length = 482 Score = 353 bits (906), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 205/459 (44%), Positives = 279/459 (60%), Gaps = 26/459 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD + LLR Y V A +G +AL Q+ DL+L D++M MDG+ Sbjct: 13 LLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEPMDGLTL 72 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH-S 126 L+ + P + V++MTA+ S+E+AVEA++ GA DY+ KP L+ +E+AL Sbjct: 73 LRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERALERARLQ 132 Query: 127 IDAETPAVTASQ----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 D + +Q +VG+S AM+ L + + VA S+ATVLI G+SGTGKELVARA+ Sbjct: 133 RDVDNLTTDFNQRHGLSALVGRSAAMRELTTRLMRVAQSDATVLIQGESGTGKELVARAL 192 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 HA S R + V +NCAA++ESLLESELFGH KGAFTGA K R G F EADGGTLF+DE+ Sbjct: 193 HAHSRRKARSFVPVNCAAISESLLESELFGHAKGAFTGAVKSRRGLFEEADGGTLFIDEV 252 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 + SP Q +LLRA+QE EV+RVG + + VDVR++AAT+RD+ EV RFRQDLYYRL Sbjct: 253 TETSPTFQSKLLRALQEGEVRRVGESTALRVDVRIVAATNRDIELEVRDKRFRQDLYYRL 312 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVVA+ VP LR+R ED+P LA HFL+R R+ K + A+ L+ Y +PGN+RELE Sbjct: 313 NVVALRVPPLRERLEDVPALAEHFLERANARSPNP-KRLSAAAVSHLMSYGFPGNVRELE 371 Query: 363 NAVERAVVLLTGEYISERELPLAIAS-TPI--------------PLGQSQDIQPLV---- 403 N VE+A L G+ + + P+ TP LG++ P + Sbjct: 372 NLVEQAAALAEGDELLPEDFPVRQGRMTPAHGTPSVAFLDGQGGALGRNASAGPTLAQVV 431 Query: 404 -EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E E+ I ALE+ G + A +LG++ TL K+ R Sbjct: 432 EEAERHAITQALERHGVDLARVADELGVSSTTLWRKMKR 470 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 353 bits (906), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 199/454 (43%), Positives = 279/454 (61%), Gaps = 24/454 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+VDDD + +L ALL G A G++AL + + D+V+ DVRM MDG+ Sbjct: 9 VLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVRMPGMDGLQV 68 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L E+ P +PV+++TA+ +V AVEA+K GA D+++KP D + + T+ KAL Sbjct: 69 LAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDREEILFTVRKALLRAQGE 128 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 +A G +G+S AM + + +A A ATVL+ G+SGTGKEL A+A+H +S Sbjct: 129 EARQQVRPTG--GFIGRSRAMADVQAVLAKAAAGTATVLLRGESGTGKELAAKAVHDASP 186 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 R + P V L+CAAL ++LLESELFG+EKGAFTGA R+ GR A GGTLFLDE+GDISP Sbjct: 187 RRDGPFVKLHCAALPDTLLESELFGYEKGAFTGAATRKPGRVELAHGGTLFLDEVGDISP 246 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 +QV+LLR IQERE++R+G Q + VDVR +AATH+ L V GRFR+DL+YRLNVV + Sbjct: 247 AVQVKLLRVIQERELERLGGTQTVKVDVRFVAATHQPLEERVKEGRFREDLFYRLNVVPV 306 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 +P+LR+R +DI LA HFL+ A+ N + + L WPGN+R+L+N +ER Sbjct: 307 WIPALRERPDDIEPLALHFLEVHAKTNGRPPFTLMTDGLAALRAQPWPGNVRQLQNFLER 366 Query: 368 AVVLLTGEYISEREL-----------PLAIASTP---------IPLGQSQDI--QPLVEV 405 VVL + I RE+ P A+TP +P+ S E+ Sbjct: 367 LVVLSDTQVIGGREVLQELARQPGLAPAPFAATPSVSALEAPTVPVTDSARTLESQRKEM 426 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 E++ + AL++ G N+T AAR LGI+R+TL KL Sbjct: 427 ERQAMADALKRAGDNRTLAARLLGISRRTLYNKL 460 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 353 bits (906), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 199/452 (44%), Positives = 287/452 (63%), Gaps = 23/452 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDDD + +A L G+ V +A+SG +AL ++ E ++ D++M ++DGIA Sbjct: 622 VLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIAL 681 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS- 126 ++ + AL P++PV+++TA+++VETAVEA++ GAL YL KPL FD L L A+AH + Sbjct: 682 MERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDELALVLRHAVAHERAR 741 Query: 127 ---IDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + A+ F +VG +PAM+ + + + VAP++ATVL+ G++GTGKELVARAI Sbjct: 742 RDVLRLRGELERAAGFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVARAI 801 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R ++P V +NC A+ + L+ESE FGHEKGAFTGA RR GRF +ADG TLFLDE+ Sbjct: 802 HRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLFLDEV 861 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+ +Q +LLR +QE+E+ RVG+ + VDVR++AAT+RDL A V+ GRFR DL+YRL Sbjct: 862 GDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLFYRL 921 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ + +P LR+R +D+P L HFL+ FA+R + P + Y WPGN+REL Sbjct: 922 NVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNVRELR 981 Query: 363 NAVERAV---------VLLTGEYISERELPLAIASTPI----PLGQSQDIQPLVE-VEKE 408 N ERAV + G ++ R P A A P+ PL +++ Q LVE E+E Sbjct: 982 NLCERAVLMGWAAVAPIFGAGAGVTPR--PDAGAGVPVDTSLPLLEAR--QRLVERFERE 1037 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + L++ G E AR GI + L K+ Sbjct: 1038 YLTRLLKERRGRIGEVARAAGIAERNLYEKMK 1069 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 197/447 (44%), Positives = 281/447 (62%), Gaps = 15/447 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMDGIA 66 I + DD+ ++ LL G V SG+ L ++++ DL+L DV+M +MDG+ Sbjct: 11 IFICDDEEGILKYMKKLLESQGLVVETFTSGKMLLARLQQGPNADLLLQDVKMPDMDGLQ 70 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL----- 121 L+E+K L P +PV+IMTA+ +++ AVEA+K GA DY+ KP + + LE L Sbjct: 71 ILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFPKEKILGVLENVLERELL 130 Query: 122 -AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E VT + +V S + + VA SEA +LI G+SGTGKEL+A Sbjct: 131 RKENQQLKEELGKVTLTD-AIVFASDRFREVYELTLEVAASEANILILGESGTGKELIAG 189 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH S R + ++++NCAAL+++LLES+LFGH +GAFTGA ++G EAD GTLF+D Sbjct: 190 AIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFTGATTNQKGLLEEADSGTLFMD 249 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+S M+Q +LLR IQE + VG+ + VD+R +AAT+++L EV GRFR+DLYY Sbjct: 250 EIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAATNKNLEKEVAEGRFREDLYY 309 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV++I +P LR+R+EDI LA HFL+++ +R K V FT +A+DL++ Y WPGNIRE Sbjct: 310 RLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVDRFTREALDLMLGYSWPGNIRE 369 Query: 361 LENAVERAVVLLTGEYISERELPL---AIAST----PIPLGQSQDIQPLVEVEKEVILAA 413 LEN VERAV+L ++ LP+ +AST P S + L VE+E I Sbjct: 370 LENVVERAVILARSGVVTTDHLPMWKKNVASTAATGPASALSSHQLVSLENVEREHIRQT 429 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLS 440 L +TG +K+ A LGI+RKTL K++ Sbjct: 430 LARTGFHKSRTAEILGISRKTLDRKIA 456 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 352 bits (904), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 190/437 (43%), Positives = 276/437 (63%), Gaps = 18/437 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDDD T+++A L G GY V LA G +AL +E+V+ + D++M EMDG+ Sbjct: 6 ILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKMEEMDGMVL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+++ + P +PV+I+TAY ++ AVEA K GA D++ KP + +L LEKAL S+ Sbjct: 66 LEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYRLEKAL-EVGSL 124 Query: 128 DAETPAVTA-----SQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 E + F ++ S MQ +L +++ +A +++TV ++G+SGTGKEL+A+ Sbjct: 125 RMEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKELIAKV 184 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H +S RS P V +NC A+ E LLESELFGH KGAFTGAD+ ++G +A+ GTLF+DE Sbjct: 185 LHLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQQAERGTLFMDE 244 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 I +++P +QV+LLR Q+ E VG Q + VD RL+AAT++DL + G+FR+DLYYR Sbjct: 245 IAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFREDLYYR 304 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 ++V+ + +P LR+R EDIPLLA HFLQ F K + GF+P AM L+ + WPGN+REL Sbjct: 305 IHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLMLHRWPGNVREL 364 Query: 362 ENAVERAVVL-----LTGEY-ISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALE 415 N VERAVVL + E+ + ERE + PL ++D E E+ ++ L Sbjct: 365 ANVVERAVVLAREGNICAEHLLLEREAVSDSGTELPPLTAARD-----EFERAYLIQVLH 419 Query: 416 KTGGNKTEAARQLGITR 432 T GN + AA + G R Sbjct: 420 STKGNVSRAAAKAGRYR 436 >UniRef50_Q2INT5 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Deltaproteobacteria RepID=Q2INT5_ANADE Length = 476 Score = 352 bits (903), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 213/460 (46%), Positives = 295/460 (64%), Gaps = 32/460 (6%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD+ + L + G+ VALA SG ALE +R + +V+ D+ M M G Sbjct: 5 VLVVDDESPNLESLGKIFEREGWRVALAGSGAAALEVLRRERAAVVVTDLMMPGMSGDEL 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ +K ++P V++MTAY +VE AV A+K GA D++ KP+ + + +AL S+ Sbjct: 65 LRAVKTVSPESEVVVMTAYGTVEAAVAAMKQGAYDFITKPVKRHAIVKAVRQALERA-SL 123 Query: 128 DAETPAVTA--------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 AE A+ A ++G +PA + +L + AP++ATVL+ G+SGTGKEL A Sbjct: 124 VAENRALKARLAELAPGGAGALLGDAPAFRAVLEILRQAAPTQATVLLLGESGTGKELAA 183 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 R +H S R+ P V ++CAA+ E+LLESELFGHEKGAFTGA R++GRF A GGTLFL Sbjct: 184 RLVHDLSPRAAGPFVPIHCAAIPETLLESELFGHEKGAFTGAVARKDGRFERAHGGTLFL 243 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++SP +QV+LLR +Q+ ++RVG N+ + VDVR++AAT++DLAAEV AGRFR+DL+ Sbjct: 244 DEIGEMSPAVQVKLLRFLQDGVLERVGGNEPVRVDVRVVAATNKDLAAEVKAGRFREDLF 303 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL+VV + +P LR+RRED+PLLA FL+R AERN K + GFTP AM L Y WPGN+R Sbjct: 304 YRLDVVRVRLPPLRERREDVPLLAMAFLRRMAERNGKPISGFTPGAMAALERYAWPGNVR 363 Query: 360 ELENAVERAVVLLTGEYISERELPLAIAST------------------PIPLGQSQDIQP 401 EL++A+ERAVVL + + +LP AI + +PLG S D Sbjct: 364 ELQHAIERAVVLTRADVVEVGDLPEAIRAAGPAAEAAPPAGPAGAPVLTVPLGTSMD--- 420 Query: 402 LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E+E+ VI L T G+K AA+ LGI +T+ KL R Sbjct: 421 --EIERRVIRETLRHTHGDKNLAAQLLGIAARTIYRKLDR 458 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 190/444 (42%), Positives = 277/444 (62%), Gaps = 10/444 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+VDD+ C +L A L+ G+ A S +A E + + FD+V+ D+ M M G+ Sbjct: 5 VLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFELLGVEDFDVVVTDMTMRGMSGLDL 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 + I P +PV+++TA+ S++TA A++ GA D++ KP + D L+ T+E+AL H Sbjct: 65 CERIVQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRHRALR 124 Query: 128 DAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + A ++ SP M+ + + +A S+ ++LI G+SGTGKELVARA+ Sbjct: 125 EEVRRLRRAVADARGYEQILSGSPVMRSVFDLLDRIADSDTSILITGESGTGKELVARAV 184 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S RSE V +NCAA+ ++LLESELFGH +GAFT A R G F A GGTLFLDEI Sbjct: 185 HQRSRRSEGAFVAVNCAAVPDALLESELFGHARGAFTDAKGARSGLFARAHGGTLFLDEI 244 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G++ +Q +LLRA+QER V+ VG+++ + VDVRLIAAT+RDL + RFR+DLYYR+ Sbjct: 245 GELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDLETAIEERRFREDLYYRI 304 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVV +++P LR R D+ LLA HFL+ FA + ++G + A + L+ Y WPGN+REL+ Sbjct: 305 NVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARPIQGLSAPAAEKLMAYAWPGNVRELQ 364 Query: 363 NAVERAVVLLTGEYISERELPLAI-----ASTPIPLGQSQDIQPLVEVEKEVILAALEKT 417 N +ERAV L ++I+ +LP I + + ++ P+ EVE+ IL LE Sbjct: 365 NCIERAVALARYDHITVDDLPEKIRTYRRSHVLVSSDDPTELVPMEEVERRYILRVLEVV 424 Query: 418 GGNKTEAARQLGITRKTLLAKLSR 441 GGNK++AA+ LG R TL KL R Sbjct: 425 GGNKSQAAQILGFDRATLYRKLER 448 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 352 bits (902), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 193/444 (43%), Positives = 287/444 (64%), Gaps = 10/444 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ IL+ +LR GY++ +ALEQ+ + FDL+L D++M G+ Sbjct: 10 ILIVDDERGQRDILKLILRKEGYDIVDVPGVGEALEQLDRREFDLILTDLKMQGQSGLDL 69 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA-----LA 122 L+ + + +P V++MTA+ SV++AVEA++ GA DYL KPL+ DNL TL++A L Sbjct: 70 LERVLSDDPQQCVILMTAHGSVDSAVEAMRMGAFDYLEKPLERDNLVLTLQRAFERIGLV 129 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + + + A T M+G P M + +A +A + +TVLI G+SGTGKELVARAI Sbjct: 130 RENRVLQKRVASTTPIPSMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKELVARAI 189 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R + P + +NCAA+ E+L+ESELFGHEKG+FTGA R G F A+GGT+FLDEI Sbjct: 190 HEGSQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAHARELGVFEAANGGTVFLDEI 249 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G+++ MQ +LLRAIQE+EV+RVG I +DVR+I+AT+++L E+ G FR+DLYYRL Sbjct: 250 GEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFREDLYYRL 309 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ I +P LR+R D+ LA F+++++ V+G + A+ LL++Y WPGN+R+LE Sbjct: 310 NVIRINLPPLRERGSDVKTLAEFFVKKYSLATGIDVEGISRPALKLLMNYSWPGNVRQLE 369 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ-DIQP----LVEVEKEVILAALEKT 417 + +ERAV++ I +LP I ST + G D+ P + +EK +I+ A+E+ Sbjct: 370 SVIERAVLMAESSVIEPGDLPAEITSTSLLAGVVPFDLPPEGIDMETLEKNLIIKAMERA 429 Query: 418 GGNKTEAARQLGITRKTLLAKLSR 441 +AA LG++ KTL +L + Sbjct: 430 DWVIGKAAPLLGMSYKTLQYRLEK 453 >UniRef50_C1SMF5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMF5_9BACT Length = 449 Score = 351 bits (900), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 182/441 (41%), Positives = 279/441 (63%), Gaps = 11/441 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE-MDGIA 66 +L+VDDD S IL+ + GY A++ ++A+ ++ VFD + D+R+ + G+ Sbjct: 4 VLLVDDDNSLLEILRLRFQSCGYTPFAADNSQKAVSLIKSDVFDAAVFDMRLDDGKTGLE 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH- 125 L+EIK ++ +PV+ +TAY +++ AV+++K GA YL KP D+ L A +EKA+ Sbjct: 64 LLREIKEIDSELPVIFLTAYGTIDDAVQSMKEGAFSYLTKPFDYKELIAKVEKAVQQCSF 123 Query: 126 -----SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 I+AE S+ ++GKS + + IA+ A S+A V I+G+SGTGKELVAR Sbjct: 124 SRQLLRINAEESDSPISK-TIIGKSSKTKMIRERIAIAAKSDANVFIYGESGTGKELVAR 182 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 +H SS RS+KP V N +A+ E+L+ESELFG+EKGAFTGADK+++G F +A GGT+F+D Sbjct: 183 MLHQSSLRSDKPFVAFNSSAIPETLMESELFGYEKGAFTGADKKKKGFFEQAQGGTVFID 242 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EI ++ MQ +LLR ++ REV +GS + I +D+RL+ A++++L ++ FR DL+Y Sbjct: 243 EISEMPVSMQTKLLRVLENREVSPLGSEKTIKLDIRLVTASNKNLKDKIENDEFRADLFY 302 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 R++V+ IEVP+LR RREDIPLL GHFL+++ +R K F+ A+D +++YDWPGNIRE Sbjct: 303 RIHVIEIEVPALRDRREDIPLLCGHFLKKYTDRYSLGTKSFSGDAIDKMVNYDWPGNIRE 362 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 L+N +E AVVL + I + LA S + + E E + +E+ GN Sbjct: 363 LQNVIECAVVLTSVGTIKGDNIKLAHESETYTQVYREAKK---EFEASFLKQLMERAEGN 419 Query: 421 KTEAARQLGITRKTLLAKLSR 441 ++A+R I R L L + Sbjct: 420 ISKASRISDIYRADLYDLLKK 440 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 350 bits (898), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 194/456 (42%), Positives = 278/456 (60%), Gaps = 24/456 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L++DD+ L++ L VA A + +Q L V + D V+ DVR+ +M G+ Sbjct: 4 VLIIDDEPGILYSLKSALERGDTAVATAATAKQGLATVARERPDAVILDVRLPDMSGLDA 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL------ 121 I+ +P +PV+++TA+ S ETA+EA K GA +YL+KP+D L L +A Sbjct: 64 FLLIRETDPRLPVIVITAHGSTETAIEATKRGAFEYLLKPIDLHQLDEVLGRAFEMRLAQ 123 Query: 122 -AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 A T S DA P +A +VG+ PAM + I +AP + VLI G+SGTGKELVAR Sbjct: 124 VAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKELVAR 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A++ S RS+KP V +NCAA+ ++LLESELFGHEKGAFTGAD+RR G+F +A GGT+FLD Sbjct: 184 ALYLHSPRSDKPFVAINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTVFLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ P Q ++LR +Q++ +RVG N+ + DVR+IAAT+RDL+A V +FR+DL Y Sbjct: 244 EIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFREDLLY 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLN + +P LR R DI L HF+ + +K V+G A+ +L + WPGN+RE Sbjct: 304 RLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAALAVLESHRWPGNVRE 363 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV----------------- 403 L+NA+ AVV GE I+ LP ++ P G + ++ L+ Sbjct: 364 LQNAMRYAVVQAVGEVITPDCLPASLRGAAAPPGDALELTALITSLLRVGATDIYRQVTH 423 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 V++ ++ A LE GN+ +AA +LGI+R TL AKL Sbjct: 424 TVDRALLTAVLEHVHGNQKQAADRLGISRTTLRAKL 459 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 350 bits (898), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 192/464 (41%), Positives = 283/464 (60%), Gaps = 31/464 (6%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDDD LL+ GY+V +A SG LE VR++ FDLV+ DV+M M G+ Sbjct: 4 ILIVDDDDQLRQSFAKLLKEEGYSVDMAPSGEAGLEAVRDKAFDLVVLDVQMPGMSGLEA 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH-- 125 I+ ++ +PV++MTAY + ETA+EA K GA DY++KP D + + +AL H Sbjct: 64 FARIREIDATLPVVVMTAYGTTETAIEATKLGAFDYILKPFDIAGVLDLITQALEAGHMM 123 Query: 126 --SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 ++ +A ++G SP MQ + I VA ++ATVLI G+SGTGKELVARAI+ Sbjct: 124 RARVEMNVAPDSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGTGKELVARAIY 183 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S R+ KP + +NC AL E+LLESELFG+EKGAFTGA RR G+ +A+GGT+FLDEIG Sbjct: 184 QHSKRAGKPFLVINCVALPETLLESELFGYEKGAFTGAASRRIGKIEQANGGTVFLDEIG 243 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+ +Q ++LR +QER ++ +G N I VDVR++AAT+R+L + FR+DLYYRL Sbjct: 244 DMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEVFREDLYYRLK 303 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV + +P LR R D+ LLA +F+ F++ + G T +A ++ H+ WPGN+REL N Sbjct: 304 VVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRHHPWPGNVRELAN 363 Query: 364 AVERAVVLLTGEYISERELPLAIASTPIPLGQS----QDIQPLV-EVEKEVILA------ 412 A++++++ G + ++ IA P G S D+ +V E +E++ A Sbjct: 364 ALKKSLIFSRGYPVRPEDISQVIAG-PDQAGPSVTDGSDMDRVVGEWAREMLTAGGDTAR 422 Query: 413 ---------------ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL+ T GN+++AA+ LG+ R TLL+K+ + Sbjct: 423 FDYLTDRLTAIIIREALQMTRGNRSQAAKLLGLARPTLLSKIDK 466 >UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSV7_THISH Length = 455 Score = 349 bits (896), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 195/443 (44%), Positives = 269/443 (60%), Gaps = 9/443 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +I VDDD + G + V + +QAL EQ DL++ D+ M + G+ Sbjct: 6 NIFFVDDDPRAGELFLRFCEGTPHQVHVFRDPQQALTAFIEQGADLIITDLAMPGLSGMD 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L I+ ++ +PV+I+T YSSV+ A+EAL+ GA D++ KP D D L +E+ L Sbjct: 66 LLSRIRDVDSDVPVIIITGYSSVDNAIEALRLGATDFIKKPYDTDELLLLIERTL-EGER 124 Query: 127 IDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E + ++GMVG AM+ + I VA V+I G+SGTGKELVAR Sbjct: 125 LKRENRLLKRQLKDERLRYGMVGHGDAMESVYRLIDKVADIRCNVIIEGESGTGKELVAR 184 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH ++KP V ++C A+N++LLESELFGHEKGAFTGA + G A GGT+FLD Sbjct: 185 AIHTQGPDADKPFVVIDCGAINDTLLESELFGHEKGAFTGAAHTKAGLLETATGGTVFLD 244 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EI +IS MQV+LLR +QE++V RVGS + I +DVR IAAT+R+L A + AG FR DLY+ Sbjct: 245 EICNISDAMQVKLLRVVQEQQVMRVGSVRPIPIDVRFIAATNRNLEAMIEAGEFRHDLYH 304 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV I +P LR RREDIP L F++ FA+R + V+GF P A++ L YDWPGN+RE Sbjct: 305 RLNVVQIHMPPLRARREDIPPLVQAFVEEFAKRYHRQVEGFDPHALERLQTYDWPGNVRE 364 Query: 361 LENAVERAVVLLTGEYIS-ERELPLAIASTPIPLGQSQDIQP-LVEVEKEVILAALEKTG 418 L N VER + L G + +R+ P A++ QP L +E+ IL L++ Sbjct: 365 LRNLVERTIALADGPVLHLDRQWPSTGAASTAAAQALDADQPDLATLERRYILKTLQRLD 424 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 GN+ + AR LGI + TL KL + Sbjct: 425 GNREQTARALGINKSTLWRKLQQ 447 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 349 bits (896), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 188/448 (41%), Positives = 281/448 (62%), Gaps = 15/448 (3%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 + +L+VDDD+S +L+ L+ GY V A SG + L + LV+ D++M M G Sbjct: 8 TVRVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMGG 67 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL--- 121 L+E+K P V+++TA+ +VE AVEA+K GA D++ KP + + L+ T+ KAL Sbjct: 68 FQLLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDMQ 127 Query: 122 --AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + + E + ++G SP M+ + I VA ++ATVLI G+SGTGKELVA Sbjct: 128 GLSRENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELVA 187 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH S+R P V +NCAA+ LLESELFGH KGAFTGA + +EG+F +A+ GTLFL Sbjct: 188 RAIHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTLFL 247 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DE+G++ +Q +LLRA+QE+EVQ VG I +DVR++AAT+ DL + GRFR+DL+ Sbjct: 248 DEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFREDLF 307 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL+V+ + +P LR+R+EDIPLL H FA ++ A F+P+ + ++ Y WPGN+R Sbjct: 308 YRLSVIPVHLPPLRERKEDIPLLVRH----FAAKHGGASVTFSPEILAVMAAYGWPGNVR 363 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ------PLVEVEKEVILAA 413 ELEN VER +++ + I +LP + P + + I L ++E+E+++ A Sbjct: 364 ELENTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVINLPDEGYSLEQLEREIVVEA 423 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 LE+ N++ AAR L I R TL+ ++ + Sbjct: 424 LERNNWNQSSAARFLRIPRHTLIYRMEK 451 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 349 bits (895), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 187/441 (42%), Positives = 273/441 (61%), Gaps = 9/441 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDDD+ +++ L G N L + G +A E V Q DL++ D+ M ++DG+ Sbjct: 6 ILIVDDDLRMRQLIRDTLASEGINAVLCSDGAEAAEMVLRQTTDLIITDLMMPQIDGMEL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH---- 123 L NP V+++T Y S+E+AV+A+K GA DYL KP + D L +++AL Sbjct: 66 LNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQRALVRLRLQ 125 Query: 124 --THSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + + A + ++G S M L + I +AP + TVLI G++GTGKEL AR Sbjct: 126 DENRQLRQQVAGCQADE--LLGASKQMTTLKALITRIAPFDTTVLIQGETGTGKELAARM 183 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R ++ + +NC AL E+LLESELFGH +GAFTGADK ++G AD GTLFLDE Sbjct: 184 IHRLSQRRDQRFLPINCGALPETLLESELFGHARGAFTGADKDKKGLLESADHGTLFLDE 243 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 I SP QV+LLR +QE RVG ++ SVD+R+IAA++ L EV GRFR DL+YR Sbjct: 244 INTTSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQTGRFRSDLFYR 303 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV I +P LR+R DI LLA +FL R+A + + +P+A+ L +Y WPGN+REL Sbjct: 304 LNVVTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSSISPEALQSLRNYHWPGNVREL 363 Query: 362 ENAVERAVVLLTGEYISERELP-LAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 EN +ERAV++ G + + LP +++ TP+ Q++ P+ EVE+ I+ L+ T G+ Sbjct: 364 ENIIERAVIMADGNELQPQYLPRFSVSDTPLSSSSDQELLPMAEVERRHIIRVLKATAGH 423 Query: 421 KTEAARQLGITRKTLLAKLSR 441 + +A++ LGI+ +L K+ + Sbjct: 424 RGKASKLLGISLASLWRKVKQ 444 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 348 bits (894), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 172/385 (44%), Positives = 253/385 (65%), Gaps = 6/385 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVF-DLVLCDVRMAEMDGIA 66 IL+VDDD L +L GY + A SG + +E+++ + DL++CDVRM + GI Sbjct: 10 ILIVDDDEEIRYSLGRVLGSRGYQIETAASGEEGIEKIKGGLKPDLIMCDVRMGGISGIE 69 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 TL+ +++ + ++ +++MTA+ + +TA+EA+K GA DY++KP D D + EKA++ + Sbjct: 70 TLQHMRSASSSLQIVLMTAFGTAQTAIEAMKFGAYDYIMKPFDVDKVIEIAEKAISSSQD 129 Query: 127 IDAETPAVTASQF-----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + + + G+VG SPAMQ + I VA S+ATVL+ G+SGTGKEL+A+ Sbjct: 130 LKSANRYEKKVNYDDYKEGIVGNSPAMQEVFKVIGQVAASDATVLVTGESGTGKELIAKC 189 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 I+ S RS P V +NCAA+ ++L+ESELFGHEKG+FTGA +R GRF + D GT+FLDE Sbjct: 190 IYQHSLRSGGPFVAVNCAAIPDNLIESELFGHEKGSFTGATTQRIGRFEQCDRGTIFLDE 249 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD++ Q ++LR +QE E+QRVG + I VDVR+IAAT++DL V FR+DLYYR Sbjct: 250 IGDMALATQTKILRVLQEGEIQRVGGTETIKVDVRVIAATNKDLEKMVEDKEFREDLYYR 309 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV I VPSL++R+ED+P + LQ + + V +P A++ L+ Y WPGN+REL Sbjct: 310 LNVFRIRVPSLKERKEDVPDIVDFMLQNLVKEKKARVTRVSPDALNALVAYGWPGNVREL 369 Query: 362 ENAVERAVVLLTGEYISERELPLAI 386 N V R+ V+ G+ I ++LP I Sbjct: 370 GNVVYRSAVVAQGDAILMKDLPDTI 394 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 348 bits (894), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 183/449 (40%), Positives = 278/449 (61%), Gaps = 12/449 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ N IL++DD+ H ++ GY +A SG+ L+ + + D+V+ D+ M Sbjct: 1 MSQYNTTILIIDDNEEHANATAEAIQKVGYKCIVATSGKAGLKIIETEEIDVVITDLIMH 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ LK K P ++++T Y +VETAV+A++ GA +L+KP++ ++L+A + K Sbjct: 61 DFSGMEILKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLRAEINKL 120 Query: 121 LAHTHSIDAETPAVTASQF-------GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGT 173 + + + + Q G++G S +MQ +L+ + ++ + ATVLI G+SGT Sbjct: 121 VEKQNLV--RNNILLQKQLDEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLITGESGT 178 Query: 174 GKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD 233 GKEL+A+ IH +S R PLV LN AA+ E++LESELFGHEKG+FTGA +R+G+F A Sbjct: 179 GKELIAKTIHNNSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQRKGKFEYAH 238 Query: 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR 293 GT FLDEIGD+ Q +LLR +++ + R+GSN+ I VDVRLIAAT+++L + G+ Sbjct: 239 RGTFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGNLIKEGK 298 Query: 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 FR+DLY+RLNV+ I++P LR+R EDIPLL F++ F+ K + TP+A +L+ Y Sbjct: 299 FREDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKEILQITPEARKILLRYQ 358 Query: 354 WPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI---QPLVEVEKEVI 410 WPGNIREL+N +E VV+ T +Y+ +LP I + S + + + E E+I Sbjct: 359 WPGNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMPVSHGLMAGMTMEDAEIELI 418 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKL 439 L GGN+ EAAR LGI +TL KL Sbjct: 419 KCTLASVGGNREEAARMLGIGERTLYRKL 447 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 348 bits (893), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 183/382 (47%), Positives = 249/382 (65%), Gaps = 6/382 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ Q L + A SG +AL+ ++ Q D+++ D+RM + G+ T Sbjct: 23 ILIVDDEEDVFYSFQRFLEEFPVRTFSAKSGEEALKLLKTQAVDVIIMDIRMGKKSGLET 82 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL-AHTHS 126 LKEI+ L P V+IMTAY + +TA+EA+K GA DY++KP + L++ + KAL A + Sbjct: 83 LKEIRKLFPQQVVVIMTAYGTCQTAIEAMKMGAYDYILKPFNMIELKSVITKALEASKLT 142 Query: 127 IDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + + A A+ F ++GKS MQ + I VAP+ ATVLI G+SG+GKELVARA Sbjct: 143 KEVSSQAFPANAFDSRSLHIIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGKELVARA 202 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 I+ S R+ KP + +NCAA+ E+LLESELFGHE+G+FTGA +R G+F + DGGT+FLDE Sbjct: 203 IYQYSLRANKPFIAINCAAIPENLLESELFGHERGSFTGAMAQRIGKFEQGDGGTVFLDE 262 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ Q ++LR +QE E R+GSN+ I DVR+IAAT++DLAA V FR DL+YR Sbjct: 263 IGEMPISTQAKILRVLQEGEFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADLFYR 322 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV I +P LR+R EDIP L HFL + A + QAM L+ Y WPGNIREL Sbjct: 323 LNVVKISLPPLRERVEDIPDLIDHFLAKHRRYLPNAPTCISSQAMRSLLAYHWPGNIREL 382 Query: 362 ENAVERAVVLLTGEYISERELP 383 EN ++RA+VL T I LP Sbjct: 383 ENVIQRAMVLATSATIQNCHLP 404 >UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=Q3A2K8_PELCD Length = 451 Score = 347 bits (891), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 189/438 (43%), Positives = 275/438 (62%), Gaps = 6/438 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+ +L+ +L+ Y V+ A +G++AL ++ +++FD+VLCDV M +DG Sbjct: 8 ILVVDDESCMRHMLRLVLQRAEYVVSEAANGQEALIRLEKEMFDVVLCDVCMPTLDGPGF 67 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA-----LA 122 LKE++A N + V++M+AY +++TAVE LK GA DY+ KP D + TL KA L Sbjct: 68 LKELRARNVSPTVIMMSAYGNLDTAVECLKEGAFDYISKPFKPDEVVLTLRKAEERLRLR 127 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + + + TA MV M+ ++ + A + VL+ G++GTGKELVARA+ Sbjct: 128 EENGLLRQELNRTAQSGQMVYACSGMEQAMTLVGRAAQVNSPVLVTGETGTGKELVARAL 187 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H R KP + +NC +N +++SELFGH +GAFTGA++ +G FV A+GGTLFLDEI Sbjct: 188 HQQGKRRGKPFIAINCGGMNAGVIDSELFGHIRGAFTGANRGHDGLFVAAEGGTLFLDEI 247 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G++ +Q RLLRA+QE+EV+ VG+ DVR++AAT R+L E+NAGRFR DL++RL Sbjct: 248 GELPMTLQPRLLRALQEQEVRPVGAVNPRPTDVRIVAATARNLQEEINAGRFRSDLFFRL 307 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 V+ I +P LR+R+ DI LLA HFL R A R ++ TP+A++ L Y WPGN+REL Sbjct: 308 AVIEIHLPPLRERKGDIALLAEHFLSRLALREGRSCPSLTPEAVESLERYAWPGNVRELA 367 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV-EVEKEVILAALEKTGGNK 421 N +E+ + + I LP I P GQ ++ V +E E I AL TGGN+ Sbjct: 368 NFMEKTAIFCRDDKICMEHLPWEIRRHPRDRGQDMSLKKAVSRIEPEYIRRALSVTGGNR 427 Query: 422 TEAARQLGITRKTLLAKL 439 T+AA+ L I+ + L K+ Sbjct: 428 TKAAQLLDISLRNLHYKI 445 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 347 bits (891), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 193/446 (43%), Positives = 274/446 (61%), Gaps = 18/446 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+ DDD + A L GY V A G+ AL+++ +V+ D+ M ++G+ Sbjct: 6 ILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKIELHEVQMVITDIMMPRVNGLEF 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH---- 123 +K++K++ P I + +A+++ E LK GA YL KP + + L+ +++ L H Sbjct: 66 IKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLEHQALQ 125 Query: 124 THSIDAETPAVTASQF--GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + S ++ P + ++G+S M L I VA S++TVLI G+SGTGKELVARA Sbjct: 126 SKSFRSK-PCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKELVARA 184 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S RS+K V LNCAA+ + LLESELFGH KG+FTGA R GRF AD GTLFLDE Sbjct: 185 IHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTLFLDE 244 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ +QV+LLR +Q RE++ VGS + VDVR+IAAT+++L V + FR+DLYYR Sbjct: 245 IGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFREDLYYR 304 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L+V+ I +P LR+R D+PLL FL++F ++ V+GF Q M++L +YDWPGN+REL Sbjct: 305 LSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPGNVREL 364 Query: 362 ENAVERAVVLLTGEYISERELPLAI---ASTPIPLGQSQDI--------QPLVEVEKEVI 410 EN VER V++ T IS +LP +T + G+ + + E E +I Sbjct: 365 ENLVERLVIIKTTGVISIHDLPEKYRGGRTTTVLHGEPMTLPDDGFCLNSAVEEFENRLI 424 Query: 411 LAALEKTGGNKTEAARQLGITRKTLL 436 L ALEK+GGNK EAA L + R TL+ Sbjct: 425 LQALEKSGGNKKEAAELLNLKRTTLI 450 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 347 bits (890), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 193/448 (43%), Positives = 276/448 (61%), Gaps = 16/448 (3%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 D+ IL+ DDD + A L GY V A+ G+ ALE++ +V+ D+ M ++ Sbjct: 2 DSARILIADDDKKTRDFVAAFLSYKGYQVFQASDGQDALEKIELNDVHMVITDIMMPRVN 61 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ +K++KA+ P I + +A+++ E LK GA YL KP + + L+ +++ L H Sbjct: 62 GLEFIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLEH 121 Query: 124 T----HSIDAETPAVTASQF--GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 S ++ P + ++G+S M L I VA S++TVLI G+SGTGKEL Sbjct: 122 QALQRQSFKSK-PCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH S R+ K V +NCAA+ + LLESELFGH KG+FTGA R GRF AD GTL Sbjct: 181 VARAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGD+ P +QV+LLR +Q +E++ VG+ + VDVR+IAAT+++L V + FR+D Sbjct: 241 FLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRL+V+ I +P LR+R+ DIPLL +FL++F ++ V+ F MD+L ++DWPGN Sbjct: 301 LYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELP---LAIASTP------IPLGQSQDIQPLVEVEKE 408 +RELEN VER V+L I+ ++LP I S P +P + + E + Sbjct: 361 VRELENLVERLVILKGSGTITFQDLPEKYRGIKSAPKSERLTLPDTGFCLNSAVEDFENQ 420 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLL 436 +IL ALEKTGGNK EAA L + R TL+ Sbjct: 421 LILQALEKTGGNKKEAATLLNLKRTTLI 448 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 347 bits (890), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 197/475 (41%), Positives = 286/475 (60%), Gaps = 44/475 (9%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMDGIA 66 +LVVDDD + ++QA+L G+ VA A SG QA+ ++ D+VL D+ M + G Sbjct: 5 VLVVDDDPTQRRLIQAVLEREGFAVAHAESGDQAISRLASGAAADVVLLDLVMPGISGQD 64 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 TL E++A + PV+++TA ++T V+A++ GA+D+ +KP + + ++ AL+ + Sbjct: 65 TLVEMRARGFSQPVIVVTATGGIDTVVQAMQAGAVDFFVKPAAPERIIVSIRNALS-MGA 123 Query: 127 IDAETPAVTASQFG------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E + G ++G SPAM + A S +LI G+SG GKE++AR Sbjct: 124 LKGEVDRLKKHASGRTTFDDLIGASPAMVMVKRLGERAARSSIPILITGESGVGKEVIAR 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H SS R+ KP V +NC A+ E+L+ES LFGHEKG+FTGA + G+F EA+GGTLFLD Sbjct: 184 AVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFQEANGGTLFLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+G++ MQV+LLRA+QE E+ +GS + + VDVR+++AT+RDL+ V GRFR+DLYY Sbjct: 244 EVGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLSQAVAEGRFREDLYY 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV IE PSLR+R+EDIP L F++RF KAV G P+ + L +DWPGN+R+ Sbjct: 304 RLNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGKAVVGAAPETLACLTGFDWPGNVRQ 363 Query: 361 LENAVERAVVLLTGEYISERELP------------------LAIASTPIP--------LG 394 LENAV RA+VL Y+ + P A A P+P L Sbjct: 364 LENAVYRAIVLADAPYLQPHDFPAISGIAAPPPEALAPKAVTASAPGPVPSAGELAAELP 423 Query: 395 QSQ----------DIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 Q Q I+PL E+E+++I A+E G+ +E AR+LGI R TL K+ Sbjct: 424 QPQAPVPILDARGHIRPLDEIERDLIQHAIEVYSGHMSEVARRLGIGRSTLYRKV 478 >UniRef50_C6BW44 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrionales RepID=C6BW44_DESAD Length = 444 Score = 347 bits (889), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 194/439 (44%), Positives = 272/439 (61%), Gaps = 3/439 (0%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 + I IL VDD S +L+ L GY+V +AL + E D+V+ D RM + Sbjct: 3 EKIRILAVDDSKSTLEVLKRNLESQGYDVLTCLRVDEALSLLEEHEIDIVITDFRMPQAT 62 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ ++ ++ + + ++++T Y S+ AVEA+K GA +YL KP + LQ +++ + Sbjct: 63 GLDLIRHVRENHRDVELMMITGYPSISGAVEAIKDGAGEYLPKPFTSEELQGAMDRIVER 122 Query: 124 THSIDA-ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 H A + V +G+VG SP MQ + I A + A VLI GDSGTGKELVARA+ Sbjct: 123 VHRRRALKAVEVPDETYGIVGNSPGMQLVFRRIGKAAATNANVLISGDSGTGKELVARAV 182 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R P V +NCAA+ +SL+ESELFGH KGAFTGA + R G F A+GGT+FLDEI Sbjct: 183 HYHSDRRAAPFVPVNCAAIPDSLVESELFGHVKGAFTGAKEARAGFFEIANGGTVFLDEI 242 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD SP MQ +LLR +Q +E +VGS+ + +VD R++AATH+DL V G FR+DLYYRL Sbjct: 243 GDASPNMQAKLLRILQSKEYCKVGSSVVHTVDTRILAATHKDLKRLVEDGSFREDLYYRL 302 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 +VV I VPSL +R +DI +L +FL +F++ + T +A+ L +Y WPGN+RELE Sbjct: 303 HVVDIPVPSLAERGDDILILISNFLVKFSKTMQCPTPSITDEALTALRNYSWPGNVRELE 362 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKT 422 N ++R VV++ + I +LP + + +P+ + D + L EVE+E I L T NKT Sbjct: 363 NLIQRMVVIVDHDPIEVTDLPPNMRFS-LPMEERVD-RSLAEVEQEHIKNVLIMTDNNKT 420 Query: 423 EAARQLGITRKTLLAKLSR 441 AA LGI RKTL KL R Sbjct: 421 RAAEILGINRKTLREKLKR 439 >UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZTC1_OPITP Length = 486 Score = 347 bits (889), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 180/382 (47%), Positives = 249/382 (65%), Gaps = 6/382 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMDGIA 66 ILV+DDD L +L GY V A +G Q + V++ DLVL DVRM+ M GI Sbjct: 10 ILVIDDDAEIRYSLSRVLSSRGYTVLEAPNGEQGVVAVKKGPAPDLVLLDVRMSGMGGIE 69 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL---AH 123 L+ I++ NP V++MTA+ + +TA+EA+K GA DY++KP D + A + AL A Sbjct: 70 ALQLIRSANPKQLVILMTAFGTAQTAIEAMKYGAFDYVMKPFDPQKVLALADAALKTRAD 129 Query: 124 THSIDAETPAVTASQF--GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 ++ P + A + G+VG SP MQ + I V S+ TV+I G+SGTGKELVAR+ Sbjct: 130 LRAVSDYKPTINADDYREGIVGSSPVMQEVFKIIGQVTASDVTVMITGESGTGKELVARS 189 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 I S RS KP + +NCAA+ ++L+ESELFGHEKG+FTGA +R G+F DGGT+FLDE Sbjct: 190 IWKHSHRSSKPFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRLGKFELCDGGTIFLDE 249 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD++ Q ++LR +Q E+QRVG + I VDVR++AAT++DL A V A FR+DLYYR Sbjct: 250 IGDMALATQTKILRVLQAGEIQRVGGTETIRVDVRVLAATNKDLEAMVKAKTFREDLYYR 309 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV I++P LR+R EDIP + LQ ++ + +P+AM L + WPGN+REL Sbjct: 310 LNVVRIKMPPLRERAEDIPQIVDFCLQNLVKQKKARATKVSPEAMAALTRHSWPGNVREL 369 Query: 362 ENAVERAVVLLTGEYISERELP 383 EN + R+ V+ GE I E++LP Sbjct: 370 ENVIYRSAVIAQGEAILEKDLP 391 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 346 bits (888), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 201/444 (45%), Positives = 277/444 (62%), Gaps = 17/444 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +ILVV+DD +L +L+ G+ V +A G + L ++R++ FDLVL D++M G+ Sbjct: 4 NILVVEDDAGFSELLATILKDDGHMVTIATDGGEGLRRIRQERFDLVLSDLKMPVKSGLE 63 Query: 67 TLKEIKALNPAIPVLI-MTAYSSVETAVEALKTGALDYLIKPL-DFDNLQATLEKALAHT 124 +E + + A P+ I +TA+ VE AV A+K GA D+L KPL D +L+ ++++AL Sbjct: 64 LFRETRQ-DAAPPLFIFITAFGKVEEAVAAIKEGAFDFLTKPLKDPRSLRDSVKRAL--- 119 Query: 125 HSIDAETPAVTASQFGMVGKSP--------AMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 S++ E ++ G P AM + I VAPS ATVLIHG+SGTGKE Sbjct: 120 ESVERERLFISLKDMERSGLPPDELIFSGSAMDAVRKMIYDVAPSTATVLIHGESGTGKE 179 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVAR IH S R + LNCAA+ E+LLESELFGHEKGAFTGA + R G+F A+GGT Sbjct: 180 LVARMIHLLSKRKGAAFIPLNCAAIPENLLESELFGHEKGAFTGAMQARRGKFELAEGGT 239 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIG++ ++Q +LLR +QER +RVG + I +VR+IAAT+RDL EV RFR Sbjct: 240 IFLDEIGEMPALLQAKLLRVLQERVFERVGGSMQIRTNVRVIAATNRDLNREVAEKRFRD 299 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNV I VP LR R + + LA +F RFA + K +KG P+A+ L+ Y WPG Sbjct: 300 DLFYRLNVFPITVPPLRARLDALAGLARYFCARFAVKTGKKLKGINPEALRLMKAYHWPG 359 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK 416 NIREL+N +ER V+ L E ++ ELP IA G I L ++E+ IL AL+ Sbjct: 360 NIRELQNVIERGVI-LAREELTAPELPAMIAGKETEGGPKVGI--LKDIERNCILEALKN 416 Query: 417 TGGNKTEAARQLGITRKTLLAKLS 440 GN+ AA LGI+++TL +L Sbjct: 417 NRGNRRMAAETLGISKRTLQYRLK 440 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 346 bits (888), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 199/465 (42%), Positives = 273/465 (58%), Gaps = 33/465 (7%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILV DD+ S +L L+ G+ V LA+ GRQAL ++E +DL + D++M M G+ Sbjct: 6 ILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGMSGLDL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA------L 121 L I+ + + V+IMTA +S++ AVEA+K GA DY+ KP D D + A +EK Sbjct: 66 LDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGRAREIA 125 Query: 122 AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + E + ++G S AMQ + I VA S+ T+LI G+SGTGKE+VARA Sbjct: 126 GQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKEMVARA 185 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R KP V +NCAA+ LLESELFG E+GAFTGA +R++G+F +A+ GT+FLDE Sbjct: 186 IHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGTIFLDE 245 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ +Q ++LR +QE EV RVG Q I+V+VR++AAT+++L V FR+DLYYR Sbjct: 246 IGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFREDLYYR 305 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV I + LR+RR+DIP L +FL R K TP+AM LL + WPGN+REL Sbjct: 306 LNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALLSRHSWPGNVREL 365 Query: 362 ENAVERAVVLLTGEYISER-------------------------ELPLAIASTPIPLGQS 396 EN ++RAV+L ++E E L T I Sbjct: 366 ENTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEAIVEAKLRSCLTGIEKLDK 425 Query: 397 QDIQPLV--EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 DI V +VE+ +I LEKT N+ +AA LGI R TL K+ Sbjct: 426 SDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRKKI 470 >UniRef50_C4XL32 NtrC family two-component response regulator n=4 Tax=Proteobacteria RepID=C4XL32_DESMR Length = 452 Score = 346 bits (887), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 203/441 (46%), Positives = 282/441 (63%), Gaps = 7/441 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD+ L +L GY+VA A SG A+ + ++ FDLVL D+RM +DG+A Sbjct: 6 VLVVDDEAIAVENLSHILAREGYDVAAAASGEAAVGLLADREFDLVLTDLRMKGLDGLAV 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH-S 126 L E K L P V++MT +++V +AVEA++ GA YL KP ++AT+ +A+ Sbjct: 66 LGEAKRLWPDTEVVVMTGHATVFSAVEAMRLGACHYLTKPYGLAEVRATVAEAMDKRRLR 125 Query: 127 IDAETPAVTASQFG----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 ++ + ++ G ++G+SPA+Q L+ I +AP+++TVLI G++GTGKELVARAI Sbjct: 126 LEVARLSRQVAELGRGPLIIGESPAIQALIDNIRHIAPTDSTVLILGETGTGKELVARAI 185 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 HA+ + + +NC A E LL SELFGHEKGAF+GA ++G F A GTLFLDEI Sbjct: 186 HAAGLQRANRFLAVNCGAFTEELLTSELFGHEKGAFSGAMSLKKGLFEVAGEGTLFLDEI 245 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G++SP MQVRLLR +QER RVG ++ I V R++AAT+RDL A+V G FR DLYYRL Sbjct: 246 GEMSPSMQVRLLRVLQERHFFRVGGDKEIPVVARILAATNRDLKADVERGLFRADLYYRL 305 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ + VP L RR+DIPLLAG F R+A K V GF+ +A+ L+ Y++PGNIRELE Sbjct: 306 NVITLRVPPLSARRQDIPLLAGAFAARYARGMDKPVTGFSAEAVRRLMAYEYPGNIRELE 365 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ--DIQPLVEVEKEVILAALEKTGGN 420 N V+RAV++ GE I +LP + L + + ++ L E+E+ I L GN Sbjct: 366 NIVQRAVIMARGEVIEAGDLPQDLHGDAPALARREGPELIALEELERRHIRDILTYCDGN 425 Query: 421 KTEAARQLGITRKTLLAKLSR 441 KT AA LGI R +L K+ R Sbjct: 426 KTRAAEILGIDRVSLWRKVKR 446 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 195/459 (42%), Positives = 283/459 (61%), Gaps = 20/459 (4%) Query: 2 THDNID-ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 T NI ILV++D+ ++ + LL GY V A +G +ALE + + F+++L D+ + Sbjct: 11 TMKNISQILVIEDEAANREAIALLLGNAGYQVTTAETGEKALEILSKTPFEVILTDLFLP 70 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + GI LK +K P V+++T S E+AVEA+K GA DY+ KPL F+ LQ + KA Sbjct: 71 GVSGIEILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQVIIAKA 130 Query: 121 LAHTHSIDAETPAVTASQFG------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 + + + AE + G ++G S MQ++ S + V +++T+LI G+SGTG Sbjct: 131 VEKSRLV-AENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTG 189 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KELVA+AIH + R EKP V +NC A+ LLESELFGH +GAFTGA + G+F +A Sbjct: 190 KELVAKAIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQ 249 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GT+FLDEIG + +Q++LLR +QE+EV++VGS++ I +DVR+I+AT+ +L EV GRF Sbjct: 250 GTIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRF 309 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R DLYYRLNV+ I +P LR+RREDI LLA +FLQ+ + + TP AM+ L +Y W Sbjct: 310 RADLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHW 369 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIA-----------STPIPLGQSQDIQPLV 403 PGN+RELEN +ER V L I + +LP I+ S P D+ ++ Sbjct: 370 PGNVRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRLTESGMDMPEVI 429 Query: 404 E-VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +E+ +I +A+ +GG K AA L I R TL+ K+ R Sbjct: 430 AGIERCLIKSAMGLSGGVKARAASLLNIKRTTLVEKIKR 468 >UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBQ0_9BACT Length = 458 Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 187/443 (42%), Positives = 284/443 (64%), Gaps = 11/443 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+V+D+ + LR G+ V +A+ G + + + D+++ D+ M +M G+ Sbjct: 8 LLIVEDEPLLRITMADALRKEGWTVDVADDGVKGAALFEQYLHDMIVSDLVMPQMGGMDL 67 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA----LAH 123 LK +KAL P V+I+TA+ +V AVEA++ GA D++ KP L L L Sbjct: 68 LKRVKALQPTTTVVIITAHGTVNRAVEAMREGAADFIAKPFSMAQLVVRLSNVCSTRLLR 127 Query: 124 THSIDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 ++ + F M+GKS AM+ + I LVA S+A+VL++G+SGTGKE+VA A+ Sbjct: 128 EQNVRLQEQLEKRHSFANMIGKSKAMREVFDLIRLVADSDASVLVYGESGTGKEMVAAAV 187 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R K V ++CA+L ESL+ESELFG+E+GAFTGA++RR GRF A GGTLFLDEI Sbjct: 188 HYNSQRRAKSYVRVSCASLPESLIESELFGYERGAFTGANERRIGRFEAASGGTLFLDEI 247 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G++ QV+LLRA+QER+++R+GSN+ + V+VR+++A+ R L E++AGRFR+DL++R+ Sbjct: 248 GELPLGFQVKLLRALQERQIERLGSNRPVDVNVRIVSASLRPLEDEIDAGRFREDLFFRI 307 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 N VAI +P LR+R ED+P+LA FLQ FAE + ++GF+ + +++ + W GN+REL Sbjct: 308 NTVAICLPPLRKRLEDVPILAASFLQEFAEERKLEIEGFSDEVLEVFDAHPWTGNVRELR 367 Query: 363 NAVERAVVLLTGEYISERELPLAI--ASTPIPLGQSQDIQPLVE-VEK---EVILAALEK 416 N VERAV+ G + ++P+++ S L + + E VEK I AAL Sbjct: 368 NVVERAVLFCRGSKVEVDDIPVSMRGRSRETALEGRDKVMTMHEAVEKAEVRAIRAALAS 427 Query: 417 TGGNKTEAARQLGITRKTLLAKL 439 TGG + +AA LG++RKTL K+ Sbjct: 428 TGGRRADAADLLGVSRKTLWEKI 450 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 191/455 (41%), Positives = 285/455 (62%), Gaps = 22/455 (4%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +ILVVDD++S +L +L GY VA A G QAL + E FDLVLCDVR+ +M GI Sbjct: 7 NILVVDDELSMRELLDVMLSREGYKVACAEDGTQALSMLGEMKFDLVLCDVRLGDMSGID 66 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK K N V++++AY++ E AV A+ GA D++ KPLD L+ T+ ++L+ + Sbjct: 67 VLKAAKKANHDTVVIMISAYATTEVAVAAMNEGAYDFVPKPLDSAELKQTIIRSLS-LRT 125 Query: 127 IDAETPAVTAS-----QFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ E A+ S F +VG P M+H+ + + VA + +LI G+SGTGKEL+AR Sbjct: 126 VEQERQALDNSLEDHLYFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGKELIAR 185 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH S R+ P V +NC + E+L+ESELFGH KG+FTGA ++G F A GT+FLD Sbjct: 186 AIHEQSDRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKGTIFLD 245 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++S +QV+LLR +Q+ ++VG + ISVD R+++AT+++L+ EV G FR+DL+Y Sbjct: 246 EIGELSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFREDLFY 305 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ + VP LR+R+ DI +LA F+++F++ K V + A+D+L Y +PGN+RE Sbjct: 306 RLNVIELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIKLSSYALDMLEKYSFPGNVRE 365 Query: 361 LENAVERAVVLLTGEYISERELPLAIAS----TPIPLGQSQDIQP----------LVEVE 406 LEN +ER+V L T I L LA+ +P G+ D++ L ++E Sbjct: 366 LENLIERSVALSTTNIILPESLSLAVHKRRWIEGVP-GRRFDLEEVTKGVALDEILADIE 424 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + + ALE +GGNK AA LGI+ ++ +L + Sbjct: 425 RAYLKKALESSGGNKNRAAELLGISFRSFRYRLDK 459 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 196/446 (43%), Positives = 270/446 (60%), Gaps = 9/446 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 N IL+VDDD + LR V A S ++A+ ++R++ FD+VL D+R+ + DG Sbjct: 3 NSTILLVDDDRHLLESMALWLREQHVEVETAASCQEAIAKMRDRAFDIVLSDIRLDDGDG 62 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 L + P V+++T Y +V+TA+EAL+ GA D L KPL + L ++E+AL+ Sbjct: 63 FDVLAFSRKNRPEQSVILLTGYGTVDTAIEALRAGAFDLLTKPLIDEELLLSIERALSQR 122 Query: 125 HSI--DAETPAVTASQFGM---VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + + + A +FG+ VG MQ + + +A + ATVLI G+SGTGK L+A Sbjct: 123 KVVEENVQLKAQLDLRFGLENIVGHEHRMQKVFDMVERIADTRATVLITGESGTGKSLLA 182 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH +R ++ V + C A+ ESLLESELFGH G+FTGA + G+F +AD GT+FL Sbjct: 183 RAIHRRGSRRDQAFVEVACGAMPESLLESELFGHAAGSFTGATGDKIGKFTQADKGTIFL 242 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG S +QV+LLR +QE E + VGS + VD R+I AT+ L V AGRFRQDLY Sbjct: 243 DEIGTASASLQVKLLRVLQELEFEPVGSTKTQRVDTRVILATNEKLEQAVAAGRFRQDLY 302 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YR+NV+ IEVP LR+R DIPLLA HFLQR E + K +GF+ + + Y+WPGN+R Sbjct: 303 YRVNVINIEVPPLRERIADIPLLANHFLQRTCEESGKRSQGFSDDVITAMQRYNWPGNVR 362 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPI----PLGQSQDIQPLVEVEKEVILAALE 415 EL+N VERAV+L G + +L AIAS I P+G + L E+ +IL LE Sbjct: 363 ELQNVVERAVLLGRGPKVQVEDLTPAIASGQIVSIDPVGNKALKEALESPERAIILDVLE 422 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 N+ A LGI R TL K+ R Sbjct: 423 MHQWNRNATADALGINRTTLYKKMKR 448 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 196/465 (42%), Positives = 286/465 (61%), Gaps = 32/465 (6%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ L+ WGY+V A++G L R + DLVL DVR+ +M G+ Sbjct: 6 ILIVDDERLVRWSLRQKCEEWGYHVIEADNGSAGLRLARHESPDLVLLDVRLPDMGGLEI 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK++K A V+++TA +E ALK GA D++ KPLDFD L ++ AL T + Sbjct: 66 LKQLKENGDARAVIMITADPQLEDVKLALKLGAYDFVGKPLDFDELSVAVKNAL-ETTRL 124 Query: 128 DAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEAT-VLIHGDSGTGKELVAR 180 E ++ +VG S M L+ +A +A SEAT +L+ G+SGTGK+LVA+ Sbjct: 125 RTEVESLRGEVRRRHGYHDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGKDLVAK 184 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH S R EKP V +NC+A+ E+L+E+ELFGHEKGAFT A ++G F ADGGTLFLD Sbjct: 185 AIHYQSRRQEKPFVAINCSAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAADGGTLFLD 244 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++SP++Q +LLR ++++ ++RVG + + VDVR+IAA++RDL V G FRQDLYY Sbjct: 245 EIGELSPLLQAKLLRVLEDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDGTFRQDLYY 304 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL ++++ +P LR R+EDI L F++R+ + +K+++G T LL+ +DWPGN+RE Sbjct: 305 RLAIISVFLPPLRDRKEDILPLVEFFIERYNRKFKKSIRGVTDNTRRLLMKHDWPGNVRE 364 Query: 361 LENAVERAVVLLTGEYISERELPLAI------------ASTPIPLGQ---SQDIQPLV-- 403 L+NA+ERA++L E + LP A+ AS P P+ Q + + LV Sbjct: 365 LKNAIERAMILDEAENLRPDYLPFAVAQQQAMYTAFESASPPAPIQQLPNGRSLPRLVIP 424 Query: 404 -------EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EVE+ + A+++ GN+T AAR L I+R L KL + Sbjct: 425 EGGTSLEEVERAFVEMAMKEANGNQTHAARLLDISRDALRYKLKK 469 >UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN3_9GAMM Length = 464 Score = 345 bits (884), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 191/454 (42%), Positives = 276/454 (60%), Gaps = 23/454 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 + ++DDD S +L GY V + + + +V D ++ D+RM DG+A Sbjct: 7 LWILDDDPSIRWVLHKAFERSGYQVQVFERADELTRALDSKVPDTIISDIRMPGTDGLAL 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK+IK +P +P++IMTA+S ++TAV A K GA +YL KP D + + + KA+AH Sbjct: 67 LKQIKQRDPDLPIVIMTAHSDLDTAVSAFKGGAFEYLAKPFDIEEARNVVAKAMAHRSKP 126 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 + A A+ ++G+S MQ + I ++ S +VLI G++GTGKE VARA+H S Sbjct: 127 EVRVSAQQANN-DIIGESAPMQDVFRAIGRLSASSVSVLITGETGTGKERVARALHKHSP 185 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 RS+KP + LN AA+ L+ESELFGHE+GAFTGADK+R+GRF++ADGGTLFLDEIGD+ Sbjct: 186 RSDKPFIALNMAAIPADLVESELFGHERGAFTGADKKRDGRFLQADGGTLFLDEIGDMPL 245 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 +Q RLLR + E + VG++Q + V+VR+IAATHRDL V FR+DLY+RLNV+ + Sbjct: 246 SVQTRLLRVLAEGQFYPVGAHQPVQVNVRVIAATHRDLKEAVANNEFREDLYHRLNVIQL 305 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 +P+LR+R++DIPLLA +FL++ A + K + A+ L Y WPGN+R+LEN Sbjct: 306 RLPALRERKQDIPLLARYFLKQSAIELEVSEKQLSDAALAQLEAYGWPGNVRQLENVCRW 365 Query: 368 AVVLLTGEYISERELP--LAIASTPIPLGQS-------------------QDIQPLVE-V 405 V+ + +S ELP L S + GQS ++ P+++ V Sbjct: 366 LTVMAPAQQVSPDELPHELLEQSEQLENGQSTGNWRELLAHELRTQTHNYDNMTPIIQDV 425 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 E+ + ALEK G+K +AA LG R TL KL Sbjct: 426 ERIALRIALEKCDGHKQKAAHWLGWGRNTLTRKL 459 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 345 bits (884), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 206/476 (43%), Positives = 281/476 (59%), Gaps = 44/476 (9%) Query: 8 ILVVDDD-ISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ I+ + AL R G+ A +G +ALE + FDLVL D+ M MDG+ Sbjct: 39 ILVVDDEAIARDNLALALGR-QGHETFTAANGAEALELLAGADFDLVLTDLMMQGMDGLD 97 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+ ++ +P V+++T Y +V+TAVEA+ GA YL KP D + +A ++KAL Sbjct: 98 LLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKAL-EKRR 156 Query: 127 IDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E + ++G +P MQ L IA VAPS+ TVLI G++GTGKEL AR Sbjct: 157 LRQEVARLREQLRERSLPVPLLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKELAAR 216 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 +H S RSE + +NC A NE LLESELFGHE+GAF+GA ++R+G F A+GGTLFLD Sbjct: 217 MVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAEGGTLFLD 276 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+G++S MQV+LLRA+QER ++RVG I VDVRL+AAT++DLAAE AGRFR DLYY Sbjct: 277 EVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGRFRHDLYY 336 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV + +P L +R ED+PLLA +F ++ A + P+ + +L Y +PGN+RE Sbjct: 337 RLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYPFPGNVRE 396 Query: 361 LENAVERAVVLLTGEYISERELP-----------------------------LAIASTPI 391 L N +ERA VL G+ I+ +LP A + + Sbjct: 397 LHNIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALVLRADEAARM 456 Query: 392 PLGQSQDIQP------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 P G + + P L E E+ I LE GGN+T AA+ L I R +L KL R Sbjct: 457 PGGAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKR 512 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 345 bits (884), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 185/454 (40%), Positives = 281/454 (61%), Gaps = 22/454 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDDD S L L GY + A++G +AL++ R+ F+ V+ D+RM M G+ Sbjct: 8 ILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMPGMGGMEV 67 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK IK ++P PV+++TAY +V TAVEA+K GA D+++KP ++++ ++ +A Sbjct: 68 LKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNVMATYEEK 127 Query: 128 D-AETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + E+ V F ++ + + +L + VA S+++VLI G+SGTGKEL AR ++ Sbjct: 128 EFRESKPVEKMTFTDREIITEDEKILGILEFLKTVAQSKSSVLIQGESGTGKELFARYLY 187 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S+R P V +NCAA+ ++LLESE+FG EKGAFTGA +R+ G+F A+GGTL LDE+ Sbjct: 188 LHSSRRHMPFVAINCAAIPDNLLESEMFGFEKGAFTGAIQRKVGKFELANGGTLLLDEVT 247 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 +++P +Q +LLR IQE+E+ R+G + VDVR+IA T+ D+ + FR+DLYYRLN Sbjct: 248 EMTPHLQAKLLRVIQEKEIDRLGGKMPLPVDVRIIATTNADVRKCIEEKTFREDLYYRLN 307 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 V+ +++P LR+R+ D+ LL +FL++++ N K + F + L YDWPGN+RELEN Sbjct: 308 VIPLKIPPLRERKGDVELLGSYFLKKYSNLNEKPLPVFANGTLKRLNAYDWPGNVRELEN 367 Query: 364 AVERAVVLLTGEYISEREL---------PLAIASTPIPLGQ-SQDIQ--------PLVEV 405 +ERAV++ G + L P A T L + S DI + E+ Sbjct: 368 VIERAVLVCGGNVVLPEHLYLEDQGSVSPAAEEKTSCSLEEVSTDISGIDLSRGMTIWEM 427 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 EKE+I + L+K GNKT A+ LGI+ +T+ KL Sbjct: 428 EKELIFSTLDKVKGNKTRASEILGISVRTMRNKL 461 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 195/455 (42%), Positives = 277/455 (60%), Gaps = 24/455 (5%) Query: 8 ILVVDDD---ISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 ILVVDD+ I C +L Y V A G +AL++V E +D+++ DV M +MDG Sbjct: 5 ILVVDDEEIVIRSCV---RILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L+ +K +P I V++MT S ++TAV+A+K GA DYL KP D D L+ + +AL Sbjct: 62 LEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALERR 121 Query: 125 HSIDA----ETPAVTASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + +T + +F ++G SP MQ + IA AP+ +TVLI G+SGTGKE++A Sbjct: 122 QLMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEMIA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH +S R ++P VT++C L+E+LLESELFGH KG+FTGA + G F A+ GTLFL Sbjct: 182 RAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTLFL 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DE G+I Q +LLR IQERE + VG+ +VRLI AT++DL A V G FR+DLY Sbjct: 242 DEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFREDLY 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YR+NV I P+LR+RR+DIP LA HFL+ F K V + AM LL++Y WPGN+R Sbjct: 302 YRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLMNYGWPGNVR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTP-----IP-----LGQSQDI---QPLVEVE 406 ELEN ++RAV+L + I + L I ++P +P L + + I + + EVE Sbjct: 362 ELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDELKRIKKIAREKSVEEVE 421 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 K + L++ N T +A + G+ R A + + Sbjct: 422 KLFVQETLKRNASNVTRSAEETGMQRTNFQALMKK 456 >UniRef50_Q1IUH0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUH0_ACIBL Length = 453 Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 194/447 (43%), Positives = 266/447 (59%), Gaps = 11/447 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ++ I+VVDDD C ++++ G+ A E + DL + DV + Sbjct: 1 MPKPSLHIVVVDDDPGTCVYIESVFAELGHTCKSFVRPEAAEEYILTHPVDLAIVDVYLG 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 G+ L+ + P + +I+T S+E A ++ GA+DY+ KP+D D L E+A Sbjct: 61 STTGVEVLRRCRVHRPKLYAVIITGQISLEMAARSIAEGAVDYIQKPIDIDALLNIAERA 120 Query: 121 LAHTHSIDAETPA-VTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 L H ETPA S+ +VG SP+M + IA VAPS A VLI G SGTGKELVA Sbjct: 121 LEHKER-SGETPAEQEESESKIVGSSPSMLEVYKLIARVAPSNANVLITGASGTGKELVA 179 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH S R+E P +NC + E+LLESELFGHEKGAFTGAD R+G GGTLFL Sbjct: 180 RAIHEHSRRAEMPFTPVNCGSFAETLLESELFGHEKGAFTGADSVRKGLIESTQGGTLFL 239 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEI + S QV+LLR +QE++++R+GSN+II +DVR++AAT+RD+ + + G+FR+DLY Sbjct: 240 DEITETSLGFQVKLLRVLQEQQLRRIGSNKIIPIDVRILAATNRDVPSLIREGKFREDLY 299 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL VV I++P L +R+ DIP L HFL++F ERN+ V A++LL WPGN+R Sbjct: 300 YRLAVVQIKIPMLAERQSDIPSLVTHFLRQFNERNQARV-SIEQSAVELLQKRSWPGNVR 358 Query: 360 ELENAVERAVVL-----LTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAAL 414 ELEN + R + +TG + + P+ LVE+E+ IL L Sbjct: 359 ELENTIYRLAIFASTGRITGADVEREQESQKNGPKAEPVSAPDR---LVEMERHQILRIL 415 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 + GNK+EAAR+LGI RKTL K R Sbjct: 416 KDVHGNKSEAARRLGIERKTLYKKAVR 442 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 344 bits (883), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 184/443 (41%), Positives = 278/443 (62%), Gaps = 10/443 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+++D++S L L GY V A G + ++ + +Q FD+V+ D+R+ DG+ Sbjct: 4 ILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADGLEV 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT-HS 126 LK ++ P V+++T Y+ V+TAVEA+K GA DY+ KP + +L + +E+ L T H Sbjct: 64 LKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFLCQTAHV 123 Query: 127 IDAETPAVTASQFG----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 D++ ++ +V SP+M + + I + A ++++V+I+G+SGTGKELVA A+ Sbjct: 124 EDSQRLREEVAEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVANAV 183 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R +KP + +NCAA+ E+LLE+E+ G+EKGAFTGA +R++G+ ADGGT F DEI Sbjct: 184 HNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFFDEI 243 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+S +Q +LLR ++ R +RVG + + VD+R I AT R L E+ G+FR+DLYYR+ Sbjct: 244 GDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLYYRI 303 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ I +P LR+R +DIPLL F+ F + + V P+AM+LL Y +PGN+REL+ Sbjct: 304 NVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYPGNVRELK 363 Query: 363 NAVERAVVLLTGEYISERELPLAI-ASTPIPLGQSQDIQPL----VEVEKEVILAALEKT 417 +AVE AV + I+ LP I +P G D L E E++ I+ L+KT Sbjct: 364 HAVEMAVTFCSDRVITPSCLPGEIREGSPALQGWRGDAGALESSRKETERQTIINVLKKT 423 Query: 418 GGNKTEAARQLGITRKTLLAKLS 440 GG K AA+ LGI+R+TL KL Sbjct: 424 GGRKMAAAKALGISRETLWRKLK 446 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 343 bits (881), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 194/462 (41%), Positives = 274/462 (59%), Gaps = 34/462 (7%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 + VVDDD S +L+ L G G +G + LE + + D++L D+RM MDG+A Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK+IK +P +PV+IMTA+S ++ AV A + GA DYL KP D D A +E+A++H Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ-- 123 Query: 128 DAETP---AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 + + P + ++G++PAMQ + I ++ S +VLI+G+SGTGKELVA A+H Sbjct: 124 EQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHR 183 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 S R++ P + LN AA+ + L+ESELFGHEKGAFTGA+ R+GRF +ADGGTLFLDEIGD Sbjct: 184 HSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGD 243 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + +Q RLLR + + + RVG + VDVR+IAATH++L V G+FR+DL++RLNV Sbjct: 244 MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNV 303 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 + + +P LR+RREDIP LA HFLQ A K P+ L WPGN+R+LEN Sbjct: 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENT 363 Query: 365 VERAVVLLTGEYISERELPLAIASTPIPLGQSQ--------------------------- 397 V+ G+ + ++LP + + + SQ Sbjct: 364 CRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS 423 Query: 398 DIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 + QP E+E+ ++ AL T G+K EAAR LG R TL KL Sbjct: 424 EAQP--ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKL 463 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 343 bits (881), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 179/450 (39%), Positives = 280/450 (62%), Gaps = 16/450 (3%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +++L+VDD+ + + + G++ A + QA + + D++L D+R+ + G+ Sbjct: 13 LNLLIVDDERVVREGCRDVAQTLGFSTFTAENAEQAYKILDSTSVDVILLDLRLPGIGGL 72 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH-- 123 L++IK P V+++T Y++V++AV+A+K GA DY+ KP + D L+ L++ H Sbjct: 73 EALRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYVTKPFNMDELRILLDRVTGHLK 132 Query: 124 ---THSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + + E GMVG++P M+ L I A S VLI G+SGTGKE+VAR Sbjct: 133 LTTENRMLREQVKARHGFGGMVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVVAR 192 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H + +KP + ++C +L +L+ESELFG+ KGAFTGA ++G ADGGT+FLD Sbjct: 193 AVHYTGCYKDKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQHSKQGLLAMADGGTVFLD 252 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++ +Q +LLRA+QE+E++ VG + + ++VR++AAT+RDL V G FR+DLY+ Sbjct: 253 EIGELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLYF 312 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ + +P LR R++DIPLL GHFL+R ER + + +A+ L++ YDWPGN+RE Sbjct: 313 RLNVLTLRIPPLRDRKQDIPLLVGHFLER-TERATGFQRNISDEALKLMLTYDWPGNVRE 371 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPI----------PLGQSQDIQPLVEVEKEVI 410 LE+ ++RA L +G I+ +LP I + + P + I P+ E+EK+ I Sbjct: 372 LEHCLDRACALTSGPTINTLDLPTTIQNWHVQTQTVLAPQAPAAPTNGIVPIAEMEKQAI 431 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L A+E+ G+K EAAR LGI + TL KL Sbjct: 432 LEAIERLHGDKLEAARLLGIGKTTLYRKLK 461 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 343 bits (881), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 185/446 (41%), Positives = 278/446 (62%), Gaps = 14/446 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL++DD+ S C+ LQ L Y + L + ++ D+VL D+++ ++DG+ Sbjct: 4 ILIIDDEPSICSSLQFALED-DYETEATTEVDKGLHIIEQEPIDVVLLDLKIGKVDGLEV 62 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+EIK P V+++TAY ++ +V+A++ GA YL KP+ + L + LE+AL H + Sbjct: 63 LQEIKRKKPETIVIMITAYGTIANSVKAIRLGAYSYLTKPIHMEELFSVLEQAL-HYKKL 121 Query: 128 DAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + + ++ GM+GKS AM + I V +++VLI G+SGTGKELVARA Sbjct: 122 NEQVAYLSQELEKKYGYEGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGKELVARA 181 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R ++ +NCAA+ E LLESELFG+EKGAFTGA R+EG+F A+ GT+FLDE Sbjct: 182 IHFSGKRKQEHFEVVNCAAIPEHLLESELFGYEKGAFTGAATRKEGKFQLANRGTIFLDE 241 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ +Q +LLR +Q++EV ++GSN+ +DVR+IAAT++ L +V G FR+DLY+R Sbjct: 242 IGDMPLALQAKLLRVLQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTFREDLYFR 301 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L+V+ I +P LR+R+ED+P L HFL F + K++KGF A L+ Y +PGNIREL Sbjct: 302 LHVIHIHLPPLRERQEDLPYLLQHFLHTFNQELGKSMKGFRSDAQRELLAYQYPGNIREL 361 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI------QPLVEVEKEVILAALE 415 N VE ++V+ GEYI +LP+ I + + +PL E+EK+ ILA L+ Sbjct: 362 SNIVESSMVIADGEYIELEDLPMFIREKGEGFAKQKGSLDDYIGRPLKELEKDFILATLK 421 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 ++ + A LGI+ + L KL + Sbjct: 422 HNDNHRKKTAEMLGISERGLRDKLKQ 447 >UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZVL8_DESOH Length = 449 Score = 343 bits (881), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 189/444 (42%), Positives = 280/444 (63%), Gaps = 13/444 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 I+VVDD+ L+ +L G+ V+ ++ R+AL+ + D+++ DVRM MDG+ Sbjct: 5 IVVVDDEPITLKQLRRILEKEGHRVSAFSNPRRALDHIESNSCDVLISDVRMPAMDGMEL 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 + +KA P I V+++T Y+S++ AVEA++ GA YL KP D ++ + +AL H + Sbjct: 65 MTRVKARFPDIEVILITGYASLDGAVEAVREGAFHYLEKPFTPDRVRERVGQAL---HLL 121 Query: 128 DAETPAVTASQFG--------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 A A +Q ++G+ ++ ++S I + P+E VLI GDSG+GKELVA Sbjct: 122 SARRSARPGAQGEDRNDAGPVIIGQGARIREVVSIIGQIGPTECNVLITGDSGSGKELVA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIHA+S RS P + NC AL+E+L+++ELFGHEKGAFTGA+ R G A GGTLFL Sbjct: 182 RAIHAASRRSAGPFLAFNCGALSETLIDNELFGHEKGAFTGAESRGIGLVEAASGGTLFL 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++ MQV+LLR +QE E+ RVG ++ + VDVR+++AT D+ A V G FR+DLY Sbjct: 242 DEIGEMPTAMQVKLLRVLQEGELMRVGGSRPVPVDVRIVSATAADIKAAVGEGIFRKDLY 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 +R+NVV I++P L +RREDIPLLA H L R + K ++ + +AM LL Y +PGN+R Sbjct: 302 FRINVVNIKLPGLAERREDIPLLAYHILSRLNRQGGKNIQAISEKAMALLSGYAFPGNVR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD--IQPLVEVEKEVILAALEKT 417 ELEN +ERAV + GE I E +LP + + + + D L E+E++ + L+ T Sbjct: 362 ELENILERAVAICQGEIIRECDLPPDLVALELQAYRPPDETFMTLAELERDYMAHLLKIT 421 Query: 418 GGNKTEAARQLGITRKTLLAKLSR 441 GG ++ A LGI R +L K+ + Sbjct: 422 GGARSRTAEILGIDRASLWRKMKK 445 >UniRef50_C5V657 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V657_9PROT Length = 464 Score = 343 bits (881), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 193/442 (43%), Positives = 284/442 (64%), Gaps = 23/442 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+VDD+ +L+ L G V A ++AL ++ +DL L D+RM + DG+ Sbjct: 25 VLLVDDEPDILELLEMTLLKMGLVVDKAACVQEALAKLAANRYDLCLTDMRMPDGDGLEV 84 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 +K I A + +PV ++TA+ ++E A+ LK GA DYL KPL + L+ ++ AL+ Sbjct: 85 VKYIAAHSLDVPVAVITAHGNMENAITVLKAGAFDYLAKPLSLEQLRTLVKSALSMPQ-- 142 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 P+ +A + ++G +PAMQ + I VA S+A V I G+SG+GKEL AR I S Sbjct: 143 ----PSPSADKL-LLGNAPAMQKVRDLIERVARSQAPVYISGESGSGKELAARLIVQSGP 197 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 RS++P++ +NC A+ E+L+ESE FG++KGAFTGADK R+G F A+GGTLFLDE+ D+ Sbjct: 198 RSDQPVIAVNCGAIPENLMESEFFGYKKGAFTGADKDRDGFFQAANGGTLFLDEVADLPL 257 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 MQV+LLR IQE+ V++VGS VDVRLI+ATH+DLA V +G+FRQDLYYRLNV+ I Sbjct: 258 TMQVKLLRVIQEKRVRKVGSTTEEPVDVRLISATHKDLAERVKSGQFRQDLYYRLNVIPI 317 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKG-FTPQAMDLLIHYDWPGNIRELENAVE 366 ++PSLR+ REDI +A L R R V F+ +A+ +L YD+PGN+RELEN +E Sbjct: 318 QMPSLRELREDIAQIAQQVLNRL----RAGVPTRFSDEALRVLQQYDFPGNVRELENIIE 373 Query: 367 RAVVLLTGEYISERELPLAIASTPI---PLGQSQDIQPLV----EVEKEVILAALEKTGG 419 RA+ L + I+ +L L +P+ +G+ D PL VEKE ++ AL++T Sbjct: 374 RALALCSEGVIAAEDLCL----SPVEQAEVGERTDKYPLPAYLDRVEKEALMEALQQTNF 429 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 N+T AA+ +G+T +T+ ++ R Sbjct: 430 NRTAAAKLIGLTFRTMRYRMER 451 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 343 bits (881), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 201/445 (45%), Positives = 275/445 (61%), Gaps = 13/445 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+ + +LR G+ V +A++G L + + FDL+ CD+ + +DG+ Sbjct: 16 ILVVDDERGIRALCSDVLRRAGHEVEVADTGTAGLAAAKAKRFDLIFCDINLPGVDGLTM 75 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L + V+++TA+ SVETAV +K GA DYL KP D L+ +AL+ Sbjct: 76 LPSLLEREDPPTVILITAFPSVETAVRGMKLGARDYLTKPFTPDELRMVCRRALSEDAMR 135 Query: 128 DAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 A +G +VG+SPAM L +A VA ++ VL+ G+SGTGKELVARA+H Sbjct: 136 RENAELRHALAYGNLVGQSPAMLQLKKTVAKVAGADINVLVMGESGTGKELVARALHYQG 195 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 AR+ + V +NC AL +SLLESELFGH +GAFTGA++ + G F+ ADGGTLFLDEIG++ Sbjct: 196 ARAGRAFVPVNCGALVDSLLESELFGHVRGAFTGAEQAKRGLFLAADGGTLFLDEIGELP 255 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 +Q +LLRA+Q+ E++ VG + VDVR++AAT+RDL V G FR+DL+YRLNV+ Sbjct: 256 LALQPKLLRALQDGEIKPVGGLEPQRVDVRVVAATNRDLQEAVAQGSFREDLFYRLNVIT 315 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 IEVP+LR+RRED+P+LA HF A R R+A +P A++ L WPGN+R+LENA+E Sbjct: 316 IEVPALRERREDVPVLAQHFAASAARRARRACPDISPAALEWLAAQPWPGNVRQLENAIE 375 Query: 367 RAVVLLTG-----EYISERELPLAIASTPIP------LGQS-QDIQPLVEVEKEVILAAL 414 RAVVL G E R +A+ P G S D+ L E+E+ IL L Sbjct: 376 RAVVLAAGNTLGIEDFQPRAGVAGLAAESAPGRRTGGRGDSADDLLSLDELERLHILRVL 435 Query: 415 EKTGGNKTEAARQLGITRKTLLAKL 439 E GG KT+A+ LGI R TL KL Sbjct: 436 EACGGQKTKASAVLGINRTTLWKKL 460 >UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pilR n=65 Tax=Proteobacteria RepID=PILR_PSEAE Length = 445 Score = 343 bits (880), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 190/439 (43%), Positives = 279/439 (63%), Gaps = 10/439 (2%) Query: 9 LVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATL 68 L+VDD+ +L+ L + A + ++A E + + FDL L D+R+ + G+ + Sbjct: 7 LIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLV 66 Query: 69 KEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSID 128 + I+ +P PV ++TAY S++TA++ALK GA D+L KP+D L+ + AL + Sbjct: 67 QYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEA 126 Query: 129 AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR 188 E P ++G+SP M+ L ++I +A S+A V I G+SG+GKELVAR IH R Sbjct: 127 EEAPVDNR----LLGESPPMRALRNQIGKLARSQAPVYISGESGSGKELVARLIHEQGPR 182 Query: 189 SEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM 248 E+P V +NC A+ L+ESE FGH+KG+FTGA + ++G F A GGTLFLDE+ D+ Sbjct: 183 IERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLPMA 242 Query: 249 MQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIE 308 MQV+LLRAIQE+ V+ VG Q ++VDVR++ ATH+DLAAEV AGRFRQDLYYRLNV+ + Sbjct: 243 MQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELR 302 Query: 309 VPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERA 368 VP LR+RREDIPLLA L+R A T A + L +Y +PGN+RELEN +ERA Sbjct: 303 VPPLRERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERA 362 Query: 369 VVLLTGEYISERELPLAIA-----STPIPLGQSQDIQPLVE-VEKEVILAALEKTGGNKT 422 L + I +L LA A L + +++ +E +E+++I+ ALE+T N+T Sbjct: 363 YTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLEDYLEDIERKLIMQALEETRWNRT 422 Query: 423 EAARQLGITRKTLLAKLSR 441 AA++LG+T +++ +L + Sbjct: 423 AAAQRLGLTFRSMRYRLKK 441 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 343 bits (879), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 179/448 (39%), Positives = 283/448 (63%), Gaps = 20/448 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 I++V+DD + + LR +GY + G +AL + ++FD+ + D+++ +DG+ Sbjct: 5 IIIVEDDPAMRLGMNHFLRAYGYEATSCDDGAKALSILDSEIFDIAIVDLKLPGVDGLTL 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK IK ++P V+I+TA++ V+TAV+A+K GA DY+ KP + L +E+ L ++ Sbjct: 65 LKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLKF-RTL 123 Query: 128 DAETPAVT-----ASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + E ++ +F G+V S M+ + +I VA ++ VLI G+SGTGKEL+A A Sbjct: 124 EKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIANA 183 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 I S R EKP + +NCAA+ E+L ESELFG+EKGAFTGA + ++G+F A+GGT+F DE Sbjct: 184 IQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFFDE 243 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ +Q +LLR I++ V R+G + I ++VR I AT ++L + A +FR+DL+YR Sbjct: 244 IGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLFYR 303 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 +NV+ I +P L++R+EDIP+L FL+ F+E+ K +P A + L+ YD+PGN+REL Sbjct: 304 INVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYPGNVREL 363 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ--------DIQPLVE-VEKEVILA 412 ++A+ERA++L I + LP + PL Q ++ +E EK +I+ Sbjct: 364 KHAIERALLLSKDGVIDIKHLPEEFS----PLSSFQKKCFISNFSLKECIENFEKNLIIK 419 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLS 440 AL++ G KTEAA++LGI+RK L K+ Sbjct: 420 ALQECGWKKTEAAKKLGISRKALWEKIK 447 >UniRef50_A9FLX9 Family membership n=6 Tax=Myxococcales RepID=A9FLX9_SORC5 Length = 471 Score = 343 bits (879), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 197/448 (43%), Positives = 279/448 (62%), Gaps = 15/448 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD + +L +L G V A R AL+ + + V+CD+RM + DG+ Sbjct: 5 VLVVDDKANMLALLSKVL-GKSAKVLTARGVRTALQLLETEPVTTVVCDLRMNDGDGLEV 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ ++A P +P ++MTAY+SV TAV+A++ GA DY+ KP D D L+A +E+A+A + Sbjct: 64 LRAVRARWPGVPFILMTAYASVPTAVQAMREGAYDYVTKPFDPDELRALVERAMAQAAVL 123 Query: 128 DAETPAVTASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 E A A F GM G+SPAM+ L I VAP++ATVLI G++GTGKELVARAIH S Sbjct: 124 KGEHDAPEAQGFAGMTGRSPAMRALYQLIERVAPTDATVLILGETGTGKELVARAIHEHS 183 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 +R+ + +NCAA+ SL+ESELFGH +G+FTGA R G F EA TLFLDEIG++ Sbjct: 184 SRASHRPIAVNCAAIPRSLIESELFGHARGSFTGAATDRAGLFEEAHASTLFLDEIGELR 243 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 P +Q +L R ++ER V+R+G ++ VDVRLI+ATHRDL A V G FR+DL++RLNV Sbjct: 244 PTVQAKLTRVLEERAVRRIGESRERKVDVRLISATHRDLRAMVKTGAFREDLWFRLNVCV 303 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 +E+P LR+R EDIP LA FL A ++R + GF+ AM L Y WPGN+REL++AVE Sbjct: 304 VELPPLRERAEDIPPLAQRFLAERAPQSRSSASGFSAAAMSALQMYRWPGNVRELKSAVE 363 Query: 367 RAVVLLTGEYISERELPLAI-ASTPIPLGQSQDIQ------------PLVEVEKEVILAA 413 RA+V+ T I LP + ++P+ L S D+ E+ + + A Sbjct: 364 RALVIETTSEIRLESLPPEVQGASPLRLTSSSDVDLAQLSYREAVDASREEMNRRYLEAV 423 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 + + G+ +AA G+ R++ L R Sbjct: 424 MRRFRGDVLKAAAHAGVERESFYRLLRR 451 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 343 bits (879), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 193/454 (42%), Positives = 282/454 (62%), Gaps = 20/454 (4%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALAN----SGRQALEQVREQVFDLVLCDVRMAE 61 + +L+VD+D +H + L GY+ +A+ SG++AL+ + + FD+++ ++ M E Sbjct: 15 VRVLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKALDLIEVENFDVIITELMMDE 74 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG+ L+ KA P V+++T ++S+++A+ A + GA YL KPLD L+ +++A Sbjct: 75 VDGLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAVDRAS 134 Query: 122 AHTHSIDA--ETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + + E +FG ++G SP+M L+ ++ VAP+++TVLI G+SGTGKE Sbjct: 135 SRIRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVAPTDSTVLIQGESGTGKE 194 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARAIH +S R KP V LN +AL ES+LESELFGHE GAFTGA +R G+F A+GGT Sbjct: 195 LVARAIHQNSERKNKPFVPLNISALPESILESELFGHEAGAFTGAATKRIGKFEYANGGT 254 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDE+G++ Q++LLR ++ER + R+G+N I ++VRL+AAT+ DL + G FR+ Sbjct: 255 LFLDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDMIKKGTFRK 314 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLY+RL+VV I +P L RR DIP L HFL++FAER ++ + T Q L+ Y WPG Sbjct: 315 DLYFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRPIPTVTRQVQQALMAYAWPG 374 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIAS----------TPIPLGQSQDI-QPLVEV 405 NIREL N VE +VL + +LP I + P G I + L +V Sbjct: 375 NIRELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHHEHSEVDLIQNPAGNDGLIGRSLNDV 434 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 EK I ALE TGG + EAA LGI +TL K+ Sbjct: 435 EKYYIARALELTGGKRDEAANLLGIGERTLYRKI 468 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 189/443 (42%), Positives = 270/443 (60%), Gaps = 14/443 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L DD I T+ AL GY V G QAL + + FDLVL DVR+ +DG+ Sbjct: 4 LLAEDDRIVRVTVRDALEEA-GYQVTACADGAQALAAIEREPFDLVLTDVRLPGVDGLTL 62 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL---AHT 124 + + P V++MTAY+ + AV ++ GA DY+ KP + D L +++ A Sbjct: 63 FRRTRRAQPDAGVVLMTAYADADDAVSVMREGARDYVQKPFEMDELLLRMQRVRDEHAFR 122 Query: 125 HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 + A P + G++G S M+ + + A S+ VL+ G++GTGK+L AR IH Sbjct: 123 KGMQAGAPPGPEAG-GVLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTIHE 181 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 S R+ +P V +NCAA+ E+L ESELFGHEKGAFTGAD++R GRF ADGGTLFLDE+G+ Sbjct: 182 RSHRAGRPFVVVNCAAIPEALFESELFGHEKGAFTGADRKRIGRFEAADGGTLFLDEVGE 241 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 ++ Q +LLRA++ + VGSN+ + VDVR+IAAT+RDLA+ + G FR+DLYYRLNV Sbjct: 242 LAASSQAKLLRALESSTFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFRKDLYYRLNV 301 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 + + P LR+RR D+P+L FL R A R + V P + L +D+PGN+REL++A Sbjct: 302 IDLHAPPLRERRGDVPVLTAAFLARIAGRLGRPVPQLEPAVVAALAAHDYPGNVRELQHA 361 Query: 365 VERAVVLLTGEYISERELPLAIASTPIPLGQSQDI--------QPLVEVEKEVILAALEK 416 +ERAV L G I LP +A P+P G++ + + + E++ I ALEK Sbjct: 362 LERAVALARGGPIRLEHLPPDLAG-PLPAGEAAPAGEGLARLGEAVEQFEQQYIRRALEK 420 Query: 417 TGGNKTEAARQLGITRKTLLAKL 439 TGG++ AA LGI+RK+L +L Sbjct: 421 TGGHRARAAALLGISRKSLWERL 443 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 189/445 (42%), Positives = 278/445 (62%), Gaps = 11/445 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 I+V DD+ ++ LL+ GY V A +G++A++ + D++L D +M + G+ Sbjct: 5 IVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLTGVEA 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH-- 125 L++IK L P V+ +TA+ SV AV+A+K GA D++ KP D D L T+ +A+ H Sbjct: 65 LEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSRAVEHCRMK 124 Query: 126 -SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 I + G++G+ ++ ++ ++ VA ++ATVLIHG+SGTGKEL+A AIH Sbjct: 125 GEIKHLKNKLGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWAIHD 184 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 S R +P V +NC A+ +L+ESELFGHEKGAFT A + + G F A+GGTLFLDEIG+ Sbjct: 185 RSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDEIGE 244 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + QV+LLR ++ER++ R+G + I V+VR++AAT+R+L EV G+FR DL YRLNV Sbjct: 245 LPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYRLNV 304 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 I++P LR+R+EDIPLLA FL++ +++ TP+AMD L YDWPGN+R+LENA Sbjct: 305 FTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAYDWPGNVRDLENA 364 Query: 365 VERAVVLLTGEYISERELPLAIASTPIP-LGQSQDIQPLVEV-------EKEVILAALEK 416 V+ A++L I LP I S + L Q+ + + EK IL+AL+K Sbjct: 365 VQSAMILCVDRQIHPGHLPARIKSYQMERLTAPQEAEEDTSLRDTNSLAEKARILSALQK 424 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 N+T A L I+RKTL K+ R Sbjct: 425 HNYNRTLTAEALNISRKTLFNKMKR 449 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 342 bits (878), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 189/450 (42%), Positives = 277/450 (61%), Gaps = 10/450 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + ILV+DDD+ +L+ L G+ L GR+A + ++ + F+++L D++M Sbjct: 1 MSQPSDPILVIDDDLRMRQLLRDTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 GI L++ A NP V+++T + +VE+AVEA+K GA DY+ KP + D L T+++A Sbjct: 61 HFSGIEILEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVQRA 120 Query: 121 LAHTHSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 H + E + G +VG+SP ++ L IA VAP TVLI+G++GTGK Sbjct: 121 TEHAR-LRQENRRLQQQVAGCRGDELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL A+ IH S R ++P + +NC AL E+LLESELFGH KGAFTGAD+ + G F D G Sbjct: 180 ELAAKLIHKWSGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQDKPGLFETVDQG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEI ++ QV+LLR +QE +VG Q DVR+IAA+ R L+ V AG FR Sbjct: 240 TLFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNVV++E+P LRQRREDIPLLA HFL ++ + K V+ + L+ + WP Sbjct: 300 RDLFYRLNVVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQVQTIPAPVITRLLDHSWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISEREL-PLAIASTPIPLGQSQDIQP---LVEVEKEVIL 411 GN+RELENAVERA++ G+ + L PL L + D + +EK++I+ Sbjct: 360 GNVRELENAVERALLFCPGQELQAEHLPPLETGGEEAELHTTADDAKSLTMASMEKKLII 419 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL++ G++ + A LGI+ +L K+ + Sbjct: 420 KALQRANGHRGKTAELLGISPASLWRKIKK 449 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 342 bits (877), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 193/448 (43%), Positives = 279/448 (62%), Gaps = 12/448 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 I +L+VD+D + ++ L GY+ +A SG + + +V++ F++V+ D+ M ++DG+ Sbjct: 16 IRVLIVDNDTALAQAMEESLARVGYHCTIATSGPEGVRRVQQDNFEIVITDLVMNDVDGM 75 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL--AH 123 L K P V+++T +++V AVEA++ GA ++L KP+ L+A EKA Sbjct: 76 EVLARAKEALPEAEVIMVTGHATVPKAVEAMQQGAFNFLEKPITPTRLRAVAEKAADAVR 135 Query: 124 THSIDAETPAVTASQFGMVG---KSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E +FG G S M+ ++ + +AP++A+VLI G+SGTGKELVA+ Sbjct: 136 LRQTNQELNQRLDERFGFEGIIFSSEKMKQVIDRLKRIAPTDASVLITGESGTGKELVAQ 195 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +S R K +V LNCAA+ E+L+ESELFGH KGA+T A R G F A+GGTLFLD Sbjct: 196 AIHQNSPRKSKRIVALNCAAVAENLVESELFGHVKGAYTDALNDRMGAFEYANGGTLFLD 255 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+GD+ Q++LLR ++E ++ RVG N+ I V+VR+++AT+R L + AG FR DLYY Sbjct: 256 EVGDMPLATQIKLLRVLEEHQITRVGDNKPIRVNVRMVSATNRALEDAIKAGTFRADLYY 315 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL VV +E+P+LRQRREDI LA HF ++F R+ K KG +P L YDWPGN+R+ Sbjct: 316 RLKVVTVELPALRQRREDIVPLADHFRRQFIRRHHKPNKGISPVVSRRLFSYDWPGNVRQ 375 Query: 361 LENAVERAVVLLTGEYISERELPLAIAS-----TP-IPLGQSQDI-QPLVEVEKEVILAA 413 L NA+E VVL T + +LP + TP I G S+ I QPL +E+ I Sbjct: 376 LRNAIETMVVLDTDGILDIDDLPPELVDAEELRTPAIASGPSELIGQPLDNIERWAIEET 435 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 L+ T GN+ EAAR LGI +TL KL + Sbjct: 436 LKLTSGNREEAARILGIGARTLYRKLDK 463 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 342 bits (877), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 193/458 (42%), Positives = 277/458 (60%), Gaps = 33/458 (7%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRM-AEMDGIA 66 ILVVDD+ + +L L G+ V A SG +AL + ++ F L++ D+++ +DG+ Sbjct: 6 ILVVDDEEGYRKVLYNALTERGFQVKTAASGEEALAEFKKNSFSLIVIDMKLPGSIDGLE 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+ K +N A +LIMTAY ++TAVEA++ GA +Y+ KP D + +E+ + Sbjct: 66 LLQRAKEMNNA-SILIMTAYGGIDTAVEAMRRGAFNYITKPFSIDEIMLNIERMIEQNKI 124 Query: 127 IDAET--PAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 I+ + FG ++G S +Q ++ I+ VA S ATVLI G+SGTGKELVARA Sbjct: 125 IEENNYLHSELEKAFGRKTIIGNSKEIQKVMDMISRVAFSSATVLITGESGTGKELVARA 184 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH + R K V +NCA L+E LLESELFGH +GAFTGA K ++G F EADGGTLF+DE Sbjct: 185 IHFNGNRKHKKFVVINCATLSEHLLESELFGHVRGAFTGAIKDKKGLFEEADGGTLFMDE 244 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGDI +Q ++LR +QE E +G +VDVR+IAAT++ L +V FR+DLYYR Sbjct: 245 IGDIPTPVQAKILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLKKVRDKEFREDLYYR 304 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV+ I++P LR+R+EDIPLL HF++++ ++ K +KG +P+ L Y WPGN+REL Sbjct: 305 LNVINIKMPPLRERKEDIPLLIKHFIEKYNKKENKQIKGLSPETEMELYKYHWPGNVREL 364 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD----------IQPLVEVEK---- 407 ENA+ERAV LT E I +PL + +P+ + +D P E K Sbjct: 365 ENAIERAVT-LTNEPI----IPLHVI---LPIVRKEDGNNMLLDDLLSHPYKEARKKALD 416 Query: 408 ----EVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + ++ + K GN T AAR+ I R+ L L + Sbjct: 417 VFNTKYVMNIINKNSGNVTNAARECKIERQYLQRMLKK 454 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 196/445 (44%), Positives = 282/445 (63%), Gaps = 19/445 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+DD + ++L A+L GY + G+ AL+ ++ Q FDLVL D+R+ ++G+ Sbjct: 7 ILLVEDDATFRSLLAAILDDEGYELVEREDGKAALKTLQRQSFDLVLSDLRLPGLNGLEL 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPL-DFDNLQATLEKALA---H 123 + +A A P +++TA+ +VE AV A+K G D+L KPL D L+ + + LA Sbjct: 67 FRRAQAEGIAPPFVLLTAFGTVEEAVAAMKEGVADFLTKPLKDPATLRVLVRRTLAVSMQ 126 Query: 124 THSI----DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 S+ + +T + + G+ AMQ + + IA VAP++ATVLI G+SGTGKEL A Sbjct: 127 ERSLQVLQERDTAGLPPDEVLFAGQ--AMQQVRTLIADVAPTQATVLISGESGTGKELAA 184 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 R IH +S R + P V LNCAA+ E+LLESELFGHEKGAFTGA + R+G+F A GGTLFL Sbjct: 185 RMIHRASPRRDAPFVALNCAAIPETLLESELFGHEKGAFTGATQARQGKFELASGGTLFL 244 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++ +Q + LR +QER +RVG N+ + DVR+IAAT+RDL EV RFR+DLY Sbjct: 245 DEIGELPLALQSKFLRVLQERVFERVGGNRELRADVRIIAATNRDLEEEVRVRRFREDLY 304 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL+V I +P+LR RR+ +P+L + L+R A + + V+ QA+ + Y WPGNIR Sbjct: 305 YRLHVFPIHLPALRDRRDGLPVLVRYLLRRAAIQTGREVQDIEQQALAAVAEYGWPGNIR 364 Query: 360 ELENAVERAVVLLTGEYISERELPLAI----ASTPIPLGQSQDIQPLVEVEKEVILAALE 415 EL+N +ERAV+L G+ ++ +LP + AS IP L + E+ IL AL Sbjct: 365 ELQNVIERAVILCKGQ-VTLLDLPGGVRQVTASGVIPKSNGS----LRDRERNDILDALA 419 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 G N+ AA +LGI+++TL +L Sbjct: 420 TCGNNRRLAAEKLGISKRTLQYRLK 444 >UniRef50_A7HD97 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A7HD97_ANADF Length = 452 Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 199/445 (44%), Positives = 273/445 (61%), Gaps = 13/445 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDDD +L LL ++V AL + ++ D++L D+RM +DGI Sbjct: 4 ILVVDDDPLAQRVLVRLL-CPAHDVHAYGDPAAALRHLADRGADVILTDLRMPGLDGIEL 62 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL-----A 122 L + L+P + V ++T +SS+ +AVEA K GA DYL KP + D++ +E+A+ Sbjct: 63 LSRARELDPEVLVFVITGHSSIASAVEATKRGAEDYLSKPFEPDDVLLRVERAIERRRLL 122 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + E A + + P M L A +++TVL+ G++G GKE+VAR + Sbjct: 123 ARVRLQEEAAAPGGAHGVFLSPHPRMAALAEFARKAARTDSTVLVQGETGVGKEIVARLV 182 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R+ + V++NC AL E+LLESELFGHE+GAFTGA RR G F ADGGT+ LDEI Sbjct: 183 HQWSPRAGRAFVSINCGALPETLLESELFGHERGAFTGAMARRAGYFEAADGGTILLDEI 242 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G SP QVRLLR +QER VQRVG I+VDVR+IAAT+ DL GRFR+DLYYRL Sbjct: 243 GATSPAFQVRLLRVLQERVVQRVGGTTPIAVDVRVIAATNEDLERAAGEGRFRKDLYYRL 302 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 VV + VP LR+RRED+ LA HFL+++ N AV+G +P+ + L+ YD+PGN+RELE Sbjct: 303 GVVTLVVPPLRERREDVGPLAEHFLRKYRHVN-PAVRGVSPEGLAKLVAYDYPGNVRELE 361 Query: 363 NAVERAVVLLTGEYISERELPL----AIASTPIPLGQSQDIQPLV--EVEKEVILAALEK 416 N VERA++L TGE +S L + A+A + + +P+ + E+E I LE+ Sbjct: 362 NVVERAMILETGEALSPGSLLVGPGAALAGSRAERADAPQPEPVAIDDAEREHIRRVLER 421 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 GG + EAAR LGI + TL KL R Sbjct: 422 CGGRRGEAARLLGIDKSTLWRKLKR 446 >UniRef50_B8DNW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Deltaproteobacteria RepID=B8DNW7_DESVM Length = 528 Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 178/389 (45%), Positives = 254/389 (65%), Gaps = 21/389 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LV+DD+ H +++A++ G++V A SG + LE + + ++VL D+RM MDG T Sbjct: 4 LLVIDDEPGHRLMVRAVMEDSGWSVEEAGSGEEGLEHLAQDRVNVVLLDMRMPGMDGQET 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L I+ + P +PV+++TA+ +V +AV A+K GA DYL KP D + L A LEKA + Sbjct: 64 LARIQEMYPGLPVVMLTAFGTVGSAVVAMKKGAFDYLTKPADNEELTAVLEKAWDFGRLL 123 Query: 128 -------------DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 D P V ASQ AM + I PSEAT+LI G+SGTG Sbjct: 124 EENENLRRRLSDDDPTAPIVGASQ--------AMCRVRDFIRQAGPSEATILIMGESGTG 175 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KEL+A+ +H +S R+++PLV +NCAAL LLESELFG+ KGAFTGA + + GRF A G Sbjct: 176 KELIAQGLHDASNRADQPLVKVNCAALPGHLLESELFGYMKGAFTGAVRDKPGRFQLARG 235 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GTLFLDEIG++ +Q +LLRA+QER V+ +G+ + + VDVR+IAAT+RDL V AG F Sbjct: 236 GTLFLDEIGELPLELQSKLLRALQERVVEPLGAVRPVPVDVRIIAATNRDLKRAVEAGEF 295 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DL++RLNV+ + P LR R ED+P+LAG L+R +N+K ++ +P+ +D L+ Y W Sbjct: 296 REDLFFRLNVLEVISPPLRDRLEDLPMLAGRLLERLCRKNKKGIRSVSPEFLDALMRYSW 355 Query: 355 PGNIRELENAVERAVVLLTGEYISERELP 383 PGN+RELEN +ERA++L + + LP Sbjct: 356 PGNVRELENVLERALILSRSDTLGPDSLP 384 >UniRef50_UPI00016C54BB two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54BB Length = 463 Score = 341 bits (875), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 187/446 (41%), Positives = 274/446 (61%), Gaps = 24/446 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+VDD++ L L G+ + A + +RE D++L D+ M DGI Sbjct: 12 LLIVDDEVELMRALCESLTDAGFEARGLSDPALAADALREGEPDVLLSDLMMPGTDGIQL 71 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ +P + +IMT +++TAVEA+K GA DY++KP + L++A+ + Sbjct: 72 LRRCLEADPHLVGIIMTGQGTIQTAVEAMKAGAFDYVLKPFRLQQVLPVLDRAM-EVRRL 130 Query: 128 DAETP---------AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 E + ++ +VG PA++ ++ I VAP+ ATVL+ G SGTGKELV Sbjct: 131 RRENANLRRYVQRLTFESDRYRIVGSGPAVRKVVQLIEKVAPTTATVLVRGPSGTGKELV 190 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARA+H +SAR +KPLVT+NCA L E+LLESELFGHEKGAFTGAD+ + G F A+GGTLF Sbjct: 191 ARAVHGNSARRDKPLVTVNCATLQETLLESELFGHEKGAFTGADRPKPGLFEVAEGGTLF 250 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 +DE+ +++P +Q +LLR +++ +RVGS Q DVR+IAAT++ L AE AGRFR+DL Sbjct: 251 VDEVAEMAPALQAKLLRVLEDGHYRRVGSTQEKRADVRIIAATNKPLEAEQKAGRFREDL 310 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKG---FTPQAMDLLIHYDWP 355 ++RL+V+ +++P+L+ RRED+P L HFL R+ +G P A LL YDWP Sbjct: 311 FFRLSVITVDLPALKDRREDVPELIQHFLH-----TRQVGRGPMTVDPAARSLLCRYDWP 365 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP------LVEVEKEV 409 GNIREL N +ERA +L G I+ +LP +A+ P ++ P L VE+ Sbjct: 366 GNIRELANVLERAQILAEGSVITPDDLPDNLAAGSGPPAAGEEPAPTTGPDDLDRVERHH 425 Query: 410 ILAALEKTGGNKTEAARQLGITRKTL 435 + L + GGNK +AA+ LG++R+TL Sbjct: 426 VRDVLHRHGGNKVQAAKALGVSRRTL 451 >UniRef50_D2QY56 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY56_9PLAN Length = 483 Score = 341 bits (875), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 193/442 (43%), Positives = 271/442 (61%), Gaps = 18/442 (4%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + +ID+LVVDDD + L G+ + A + ALE + FD+ + D++M M Sbjct: 4 YTHIDLLVVDDDQEFRETVVKRLSRSGFRLQDAPTAEAALELAERRDFDVAVFDMQMPGM 63 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ L K +P V+++T S+E+AVEA++ GA DYL KP +L+ +EKA Sbjct: 64 SGLDLLAAFKTKHPDCEVILLTGQGSIESAVEAMRMGAFDYLTKPFPLRDLEVRIEKAY- 122 Query: 123 HTHSIDAETP------AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 H + E A +A M+GKS AMQ L I PSE +LI G+SGTGKE Sbjct: 123 DRHLLRKENQQLKTILARSAPGSTMIGKSVAMQELQRLIQRAGPSEKAILIQGESGTGKE 182 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARA+HA+S+R+++P+V +NCAAL E LLESELFGHEKGAFTGA + G F ADG T Sbjct: 183 LVARALHAASSRADRPMVVINCAALPEPLLESELFGHEKGAFTGAVAAKPGLFEVADGST 242 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LF+DEIG++ +Q +LLR +++ ++R+GS Q V+VR++AAT+R + EV AG FR+ Sbjct: 243 LFIDEIGEMPGSLQAKLLRVLEDGSLRRIGSLQERRVNVRILAATNRSMQDEVTAGNFRE 302 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYR+NV+++E+P LR R DIPLL HFL + P A+ L Y WPG Sbjct: 303 DLYYRINVMSLELPPLRSRTADIPLLVEHFLGKDWR--------IEPTALSALEQYAWPG 354 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAI--ASTPIPLGQS-QDIQPLVEVEKEVILAA 413 N+R+L NA+ERA ++ G I +LP + A I L S DI L ++++ I+ Sbjct: 355 NVRQLINAIERAKIMADGRTIRANDLPTEVLHALPQIELPPSLDDIDDLSAIQRQKIVEV 414 Query: 414 LEKTGGNKTEAARQLGITRKTL 435 L++ GNK+ AAR LGI R+ L Sbjct: 415 LKREKGNKSRAARMLGIDRRKL 436 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 341 bits (874), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 197/453 (43%), Positives = 275/453 (60%), Gaps = 15/453 (3%) Query: 1 MTHD-NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRM 59 MT D I L+VDD S + A+ G+ + A S AL + Q D++L D+RM Sbjct: 1 MTDDYRIRFLIVDDQQSIRKLCIAIGNTLGFICSEAESAEAALAALETQSPDIILADLRM 60 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 E+ GI L +K L P V IMT Y S+ETAV+++K GA DY+ KP + L+ L++ Sbjct: 61 GELSGIDFLASVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFRVEELKIILQR 120 Query: 120 A------LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGT 173 +A H + E G+VG S +Q +L + + + VLI G+SGT Sbjct: 121 MAEKVRLVAENHFL-RERVNTEMELHGIVGSSAKIQDVLRMVGRLKDTRTPVLICGESGT 179 Query: 174 GKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD 233 GKELVARA+H +++P V ++C +L +L+ESELFGHEKGAFTGA K +EG F A+ Sbjct: 180 GKELVARAMHFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIKPKEGLFQAAN 239 Query: 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR 293 GGT+FLDEIG++ +Q +LLR +Q+++V+ VGSNQ + VDVR+IAAT+RDL A G Sbjct: 240 GGTIFLDEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRDLEAGYKTGT 299 Query: 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 FR+DLY+RLNVV + +PSLR+R+ DIP L HF+ R R+ V+ T QAM L+ YD Sbjct: 300 FRKDLYFRLNVVTVYLPSLRERKSDIPSLIQHFIDR-PSAGREGVE-VTSQAMKSLMQYD 357 Query: 354 WPGNIRELENAVERAVVLLTGEYISERELP-----LAIASTPIPLGQSQDIQPLVEVEKE 408 WPGN+RELEN +ERAV L GE I +LP +A + + D L ++E+ Sbjct: 358 WPGNVRELENCIERAVALGNGEVIDVDDLPPSLQAMAPKKNAPAVSEGYDSTDLEDIERT 417 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I ++ GG+K A + LGI+R TL K+ R Sbjct: 418 TIQRVFDQVGGDKGLALKMLGISRATLYRKIKR 450 >UniRef50_A2SE88 Two-component response regulator CbrB n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SE88_METPP Length = 482 Score = 341 bits (874), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 191/441 (43%), Positives = 270/441 (61%), Gaps = 14/441 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LV+DDD ++ LL+ GY + +G + L Q+R + FD+V+ D+R+ + G+ Sbjct: 20 VLVIDDDHGIGDCVEMLLQRAGYTCVITRTGGEGLAQLRSREFDMVITDLRLPDASGLDI 79 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 + KA NP V++MT++SSVE+A+EAL+ GA DY+IKP D D+ ++E+AL + Sbjct: 80 VAASKAANPETQVILMTSFSSVESAIEALRLGANDYVIKPFDNDDFLFSVERALGERRT- 138 Query: 128 DAETPAV------TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 E A+ SQ ++G+S ++ LL I VA +EA VLI G+SGTGKELVA+A Sbjct: 139 RMENVALKRSLRKAYSQNAIIGESDGVKRLLGMIQRVAATEANVLIQGESGTGKELVAQA 198 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH R+ +P V +NC A+ L+ESELFGH KGA+TGA EG EA GGTLFLDE Sbjct: 199 IHFGGNRAHRPFVAVNCGAIPAELIESELFGHVKGAYTGAASASEGLIREASGGTLFLDE 258 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 I ++ +QV+LLR +QER+V+ +GS Q D R +AA++R+L +G FR DLYYR Sbjct: 259 ISEMPLNVQVKLLRVLQERQVRPLGSGQSYITDTRFLAASNRNLKESAESGSFRADLYYR 318 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV+ I VP LR+R DI LLA HF+Q F+ + V G +D L + WPGN+REL Sbjct: 319 LNVITIHVPPLRERGADIELLARHFMQLFSRKFGSRVSGMDRDFIDFLHRHSWPGNVREL 378 Query: 362 ENAVERAVVLLTGEYIS----ERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKT 417 +N +ERAV+L + +S E L L T +PLG + + E KEV+L ++ Sbjct: 379 QNVIERAVILADADILSAADLEETLALPAKETHLPLGSGLPLS-VEEYIKEVVLLYQDRH 437 Query: 418 GGNKTEAARQLGITRKTLLAK 438 G + E A LGI RK L + Sbjct: 438 G--EAELAAMLGIGRKALWMR 456 >UniRef50_Q11Y64 Two-component response regulator for zraP n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11Y64_CYTH3 Length = 436 Score = 340 bits (873), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 184/433 (42%), Positives = 277/433 (63%), Gaps = 7/433 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+++DDIS TIL+ L+ G+ V + G+ LE + Q D VL D+R+ + +GI Sbjct: 4 VLIIEDDISLRTILEKFLQKNGFEVISTDRGKAGLEIITSQHIDFVLLDLRLPDSNGIEI 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ IK L+ + V++MT Y V +AV A+K+GA DYL KP++ + L + L+ A ++ Sbjct: 64 LQSIKKLHSHVSVIMMTFYDDVRSAVTAIKSGARDYLTKPINPEELLSLLKPIQAVKKAV 123 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 + + S+F + GK+ +L LVAP+ +VLI G+SGTGKE +A+ IH +S Sbjct: 124 E-----INKSEF-VQGKNEKFAGVLEHARLVAPTMLSVLITGESGTGKEELAKYIHTNSQ 177 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 R +K +T++C +++E L SE FGH KG+FTGA + G A+GGTLFLDE+G+++ Sbjct: 178 RKQKDFITVDCGSISEELFGSEFFGHMKGSFTGAVYDKPGLLESANGGTLFLDELGNLTY 237 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 Q++LLR +QE++V+R+GSN+ I +D+RLIAAT+ ++ V +FR+DLY+RLN I Sbjct: 238 ENQIKLLRVLQEKKVKRIGSNKEIDLDIRLIAATNEEIVLSVQKEKFREDLYHRLNEFKI 297 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 VP+LR+R ED+ L HF+ + K VK + + +L Y +PGNIREL+N V R Sbjct: 298 HVPALRERPEDLNELINHFIAKSNSEFGKHVKQLSESGLAVLAQYAFPGNIRELKNIVRR 357 Query: 368 AVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE-VEKEVILAALEKTGGNKTEAAR 426 AV+L T E I + +LP I +T + D++ L E E++ I+ AL+KTG NK+EAAR Sbjct: 358 AVLLATSETIEKDQLPQEIFNTRTLAVDTVDLKSLQEQQERDAIIKALKKTGNNKSEAAR 417 Query: 427 QLGITRKTLLAKL 439 L I RKTL KL Sbjct: 418 ILNIDRKTLYNKL 430 >UniRef50_A7HCY5 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A7HCY5_ANADF Length = 446 Score = 340 bits (872), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 203/445 (45%), Positives = 279/445 (62%), Gaps = 27/445 (6%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+ ++ +L G+ V A GR AL ++ FD+V+ D+RM ++DG+A Sbjct: 4 ILVVDDEPKLGKVVAQMLELDGHEVERAAGGRDALVRLAASRFDVVVTDLRMPDVDGLAV 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ +A+ V++MTAY++ E+AVEA+K GA+DY+ KP D L+ + + A + Sbjct: 64 LRAARAVPQPPEVVVMTAYATAESAVEAMKAGAVDYVTKPFSMDELRLRVRRLAAQRGAE 123 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 E V +V +SPAM+ L VA ++ATVL+ G+SGTGK +AR IH Sbjct: 124 VREARLVARLTPELVAESPAMRAALQAARQVAATDATVLLLGESGTGKSQLARFIHYQGR 183 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 R+ PLV ++CAAL E+LLE ELFGHEKGAFTGA +R+ G AD GTLFLDEIG+I+P Sbjct: 184 RAAGPLVEVHCAALPETLLEGELFGHEKGAFTGATQRKAGHLAAADRGTLFLDEIGEITP 243 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 QV+LLR +Q+R +G+ + SVDVR+++AT+RDLAA V G FR+D YYRLNV AI Sbjct: 244 ATQVKLLRFLQDRRFVPLGATEERSVDVRVVSATNRDLAAAVAEGTFREDFYYRLNVFAI 303 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTP-----QAMDLLIHYDWPGNIRELE 362 VP LR+R ED+ LA FL A +G P A + L+ + WPGN+RELE Sbjct: 304 PVPPLRERPEDVLPLAERFL---------AARGLPPSKLGASARERLLAHRWPGNVRELE 354 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLG-QSQDIQPLVE------VEKEVILAALE 415 NA+ERA++L E I +L AS G ++ D+ LVE E+E++ AALE Sbjct: 355 NALERALILAGEEEIRADQL----ASGGAQRGRRATDL--LVEGFSLDAFERELLHAALE 408 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 + GGNKT AAR LGITR+ L + L+ Sbjct: 409 RAGGNKTHAARMLGITRRRLYSLLA 433 >UniRef50_D0LHR5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHR5_HALO1 Length = 488 Score = 340 bits (871), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 207/484 (42%), Positives = 287/484 (59%), Gaps = 53/484 (10%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 H +LVVD + L ALL G GY V A S +A+ +V +D VL D + M Sbjct: 2 HPAQRVLVVDAE-PQIHRLIALLLGDGYQVDGAASAAEAIARVHHTPYDAVLIDTDLPTM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G L++++ L P + V++ TA ++V+ AV+A++ GALDYL K + D L+A +++A Sbjct: 61 SGFDLLRKLRKLAPELAVILTTAQATVQAAVKAIRIGALDYLRKTVSADELRAAVQRAAD 120 Query: 123 H------THSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 H + +E ++G SPAM+ L+ + VA S+ATVLI G+SGTGKE Sbjct: 121 HATLAREVRRLRSEVDRARGLDH-LIGDSPAMRQLVGLVERVAHSDATVLILGESGTGKE 179 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L++R +H R+++P V +C+AL SLLE+ELFGHEKGAFTGA K R G F EA GT Sbjct: 180 LLSRTLHRIGPRADRPFVAFDCSALTPSLLEAELFGHEKGAFTGAGKARRGLFREAHQGT 239 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIGDI+P +Q +LLR +QERE++ VG +Q + VDVR+IAAT++DL A+V G FR+ Sbjct: 240 IFLDEIGDIAPSVQNKLLRVLQEREIKPVGGDQFVQVDVRVIAATNKDLKAQVARGAFRE 299 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGF-----------TPQA 345 DLY+RL VV I+VP LR+RREDI LLA H L ER R A K F +P A Sbjct: 300 DLYWRLAVVPIQVPPLRERREDIALLAAHIL----ERKRGAAKSFAGGETPYPTKISPGA 355 Query: 346 MDLLIHYDWPGNIRELENAVERAVVLLTGEYISEREL-----PLAIASTPIPLGQSQDIQ 400 M L+ Y WPGNIRELEN + RA +L GE I +L P A+ P G ++D Sbjct: 356 MTRLLAYHWPGNIRELENVLSRAAILCDGEEIRADDLDMVGVPGDQATPPDSAGATEDDA 415 Query: 401 P-------------------------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTL 435 P + VE++ I ALE+ G+ ++AAR+LGI+R ++ Sbjct: 416 PGPAKLGGLDVDASAGRPLKRLIDETVKAVERQAIAEALERCEGSPSKAARRLGISRASV 475 Query: 436 LAKL 439 K+ Sbjct: 476 YNKI 479 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 340 bits (871), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 188/456 (41%), Positives = 285/456 (62%), Gaps = 18/456 (3%) Query: 4 DNIDILVVDDDI----SHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRM 59 + + L+VDD+ S +IL++ + + + A +G++AL++V++Q +DLVL DV+M Sbjct: 3 NKLHTLIVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEALDKVKQQQWDLVLMDVKM 62 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 EM+G+ L IK +P V++MTA+S++ AV A+K GA DY+ KP+ L + K Sbjct: 63 PEMNGLEALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEIVRK 122 Query: 120 ALAH---THSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 +L S+ P + +VG S M+ + + I + + TVL+ G++GTGK Sbjct: 123 SLEARDLISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGK 182 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARAIH +S R V +NC A+ E+L+ESELFGHEKGAFTGA +R+ G+F A+ G Sbjct: 183 ELVARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANNG 242 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++ P MQV+LLR +QER+ VGSN+ + R+IAAT+R+L + G FR Sbjct: 243 TLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFR 302 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV+ I +P LR+R +DI LAG+F+++F++++ + + TP+A+D+L Y WP Sbjct: 303 EDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSYRWP 362 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTP-------IPLGQSQ--DIQPLV-EV 405 GNIRELEN +ER+ ++ I+ LP +I TP +G S D E+ Sbjct: 363 GNIRELENIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVGYSGPLDFDAFKEEM 422 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EKE I++AL+ G + Q I + TLL K+ + Sbjct: 423 EKEFIVSALKANNGRINQTVAQANIPKNTLLRKIRK 458 >UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacteria RepID=Q47I00_DECAR Length = 457 Score = 340 bits (871), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 192/458 (41%), Positives = 280/458 (61%), Gaps = 27/458 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M N+ ILVV+DD S + L G + G AL+ + EQ F +V+ DVRM Sbjct: 1 MAEHNLPILVVEDDPSLREAIADTLELAGRPCVAVDGGEAALKVLEEQAFSIVVSDVRMM 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDGI LKEI+A P +PV++MTAY+ V+ AV+A+++GA D+L+KP + L Sbjct: 61 PMDGITLLKEIRARLPHLPVVLMTAYAEVDKAVDAMRSGACDFLLKPFEPQAL------- 113 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 LAH + E PA + G+V PA + L + VA ++ATVL+ G+SG GKE+VAR Sbjct: 114 LAHINKY--ELPA-SDDGSGVVAIDPASRELFAVAQRVAQTDATVLLTGESGVGKEVVAR 170 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH SAR P V +NCAA+ +SLLE+ LFG+EKGAFTGA + + G+F +A GTL LD Sbjct: 171 FIHRQSARKNGPFVAINCAAIPDSLLEATLFGYEKGAFTGAQQAQAGKFEQAQDGTLLLD 230 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ ++ +Q +LLR +QEREV+RVG + +++++R+IA ++RD+A V G FR+DLYY Sbjct: 231 EVTEMPMGLQAKLLRVLQEREVERVGGKKPVALNIRIIATSNRDMAEAVAKGVFREDLYY 290 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV + +PSLRQRR DI +A HF+ R + +P A L + WPGN+RE Sbjct: 291 RLNVFPVGIPSLRQRRGDIVPIARHFVVEHGGRFGRTGMSLSPAAEAALREHSWPGNVRE 350 Query: 361 LENAVERAVVLLTGEYISERELPLA-----------IASTPIPLGQS------QDIQPLV 403 LEN ++RA+++ TG I L LA A+ P+P+ S + + + Sbjct: 351 LENVIQRALIMATGSTIGPEVLNLAPRSSGETAVVQPAAAPMPVEHSGLTDTDKKVDNMK 410 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++E+E IL L + GG++ +A +LGI+ +TL KL + Sbjct: 411 DLEREHILRTLAEVGGSRKKAIERLGISERTLRYKLQQ 448 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 194/461 (42%), Positives = 279/461 (60%), Gaps = 34/461 (7%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ + ++ L GY A S +ALE++ + DL+L D+R+ ++G+ Sbjct: 7 ILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLPNINGVEL 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 +++IK +P +++MT Y SV++AVE ++ GA DYL KP D L++ +EKAL + Sbjct: 67 IEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEKAL-RRQGL 125 Query: 128 DAETPAVTASQFG--------MVGKSPAMQHLLSEIALVAPSEAT-VLIHGDSGTGKELV 178 E + Q+ ++G SP M+ + S I VA S +T VLI G+SGTGKELV Sbjct: 126 RQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKELV 185 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGA-DKRREGRFVEADGGTL 237 ARA+H SAR V +NCAAL ESLLE+ELFG+EKGAFTGA + G F AD GT+ Sbjct: 186 ARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEIADKGTV 245 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG++ ++Q +LLR +QER+ +RVG Q I +DVR+IA+T+R+L E+ +G FR+D Sbjct: 246 FLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASGNFRKD 305 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRL V+ I VP LR+RREDI LL +F+ ++ K + P +L+ Y WPGN Sbjct: 306 LYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILLEYGWPGN 365 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ-------------------D 398 IREL+N VER V++ G +S P +A+ + +S+ D Sbjct: 366 IRELKNVVERGVLIANGSALS----PKYVANISVGKKESESLAGITVDGNTDCVSSDGLD 421 Query: 399 IQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 + L +EK+ I L++T +TEAAR LGI R TL K+ Sbjct: 422 ARSLAFMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKI 462 >UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2X1_9BACT Length = 519 Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 177/395 (44%), Positives = 251/395 (63%), Gaps = 6/395 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAEMDGIA 66 ILV+DDD L +L Y V A SG + + V++ D+V DVRM M G+ Sbjct: 9 ILVIDDDAEVRYSLSRVLSSKSYQVVEAASGEEGVGLVKKGPAPDVVFLDVRMGGMSGLE 68 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+ I+++NP V++MTA+ + +TA+EA+K GA DY++KP D + A E AL H Sbjct: 69 ALQHIRSVNPRQLVILMTAFGTAQTAIEAMKFGAFDYIMKPFDPAKVLALAENALKAHHD 128 Query: 127 IDAE---TPAVTASQF--GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + A P + + G+VG SP MQ + + V S+ TV+I G+SGTGKELVAR+ Sbjct: 129 MRAAGEYKPTINVDDYREGIVGASPVMQDVFKIVGQVTASDVTVMITGESGTGKELVARS 188 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 I S R+ K + +NCAA+ ++L+ESELFGHEKG+FTGA +R G+F D GT+FLDE Sbjct: 189 IWKHSHRAAKSFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRIGKFELCDRGTIFLDE 248 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD++ Q ++LR +Q+ E+QRVG I VDVR+IAAT++DL A V A FR+DLYYR Sbjct: 249 IGDMALATQTKILRVLQQGEIQRVGGTDTIKVDVRIIAATNKDLEAMVKAKTFREDLYYR 308 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV I++P LR+R DIP + LQ ++ + V +P+AM++L +DWPGN+REL Sbjct: 309 LNVVRIKMPPLRERTGDIPQIVDFCLQNLVKQKKARVGKVSPEAMNILARHDWPGNVREL 368 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQS 396 EN V R+ V+ G+ I ++LP+ I PL + Sbjct: 369 ENVVYRSAVIAQGDMILPKDLPVEIRDAVPPLATA 403 >UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5EJI5_ACIF5 Length = 455 Score = 339 bits (869), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 193/439 (43%), Positives = 267/439 (60%), Gaps = 14/439 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+D+ + ++L A L G++ A S AL + ++ LVL D R+ M G Sbjct: 6 ILIVEDEKNLRSVLAATLEAEGFSTAQTESAEDALAIMARELPVLVLTDQRLPGMSGTEL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA---HT 124 L IK P PVLI TAY +E AV+A+K GA YL KP+D L A + +AL+ HT Sbjct: 66 LARIKERWPRTPVLIATAYGEIEQAVQAIKAGAEHYLTKPVDEGELVAIIRQALSCRGHT 125 Query: 125 HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 + ++ + G++G+SP +L I LVAP+ + VLI G+SGTGKE+VAR +H Sbjct: 126 NPPRSQD----LPRHGIIGESPGTLEILEMINLVAPAPSNVLITGESGTGKEMVARGLHV 181 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 +S R+ P + NC A+ L+ESE+FGHEKGAFTGA + + G+ A GTLFLDE+GD Sbjct: 182 ASPRAHAPFLAFNCGAIPLDLVESEIFGHEKGAFTGAVRSQAGKLEMAGSGTLFLDEVGD 241 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + MQV+LLR +QERE R+G NQ + + R+IAATH DLA V AG FR+DLYYRLNV Sbjct: 242 MPLAMQVKLLRTLQEREYTRLGGNQPLRLAARIIAATHVDLAKAVEAGSFREDLYYRLNV 301 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 + + +P LR+RRED+ L HFL+R + A+ + Y WPGNIR+LEN Sbjct: 302 IPLHIPPLRERREDVAPLVHHFLRRVCTELGRPEVDIATAALAAMEAYSWPGNIRQLENI 361 Query: 365 VERAVVLLTGEYISERELPLAIASTPI----PLGQSQDIQPLVEVEKEVILAALEKTGGN 420 VER VVL G I +LP + +T P G + D+ VE+E +++AL K N Sbjct: 362 VERLVVLNRGGTILAADLPNEMRTTETERIRPFGGAYDLH---AVEREAVVSALNKAQSN 418 Query: 421 KTEAARQLGITRKTLLAKL 439 K++AA LGI+RK L ++ Sbjct: 419 KSQAALLLGISRKQLHTRM 437 >UniRef50_B3QKR1 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Rhodopseudomonas palustris RepID=B3QKR1_RHOPT Length = 495 Score = 338 bits (867), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 190/478 (39%), Positives = 278/478 (58%), Gaps = 47/478 (9%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ---VFDLVLCDVRMAEMDG 64 IL+ DDD +++ +++ GY +SG A+E + D V+ D+ M +DG Sbjct: 5 ILIADDDAVQRRLVENMVQKCGYEAVSVDSGDAAVEALTAPDAPAIDAVVLDLVMPGLDG 64 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L +I+A +PV++ TA+ ++ V A++ GA D+++KP+ + LQ +L AL + Sbjct: 65 LGVLSKIRASGLDVPVIVQTAHGGIDNVVSAMRAGAHDFVVKPVGIERLQVSLRNAL-NA 123 Query: 125 HSIDAETPAVTASQFG------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 ++ E + ++ G ++ +S AM +L A S VLI G+SG GKEL Sbjct: 124 SAMKGELQRIRHAREGRLTFSDIITRSEAMAPVLRAAEKAAGSAIPVLIEGESGVGKELF 183 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARAIH SS R KP V +NC A+ ++L+ES LFGHEKGAFTGA +R +G+FVEA GGTLF Sbjct: 184 ARAIHGSSDRRSKPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHDGKFVEASGGTLF 243 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDE+ ++ QV+LLRA+QE V+ VG + + VDVR+I+AT+R L V AG+FR+DL Sbjct: 244 LDEVSELPLAAQVKLLRALQEGAVEAVGGRRPVKVDVRIISATNRRLLDRVKAGQFREDL 303 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRL+V+ + +P LR RREDIP L HFL RF ++++ G T +AM L DWPGNI Sbjct: 304 FYRLHVLPLTIPPLRTRREDIPPLLRHFLMRFCAEEKRSIGGITGEAMARLAQLDWPGNI 363 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIP-------------------------- 392 R+LENAV RAVV+ G+ + + PLAIA + +P Sbjct: 364 RQLENAVYRAVVMSDGDQLGLADFPLAIAPSVVPAEDTTGEPLVIERSEPQFVAASEVPI 423 Query: 393 -----------LGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 L +++PL E+E+E+I A+ G +E AR+L I R TL KL Sbjct: 424 APLPSVGNLSMLTADDEVRPLDEMEREIIRFAISHYRGQMSEVARRLKIGRSTLYRKL 481 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 338 bits (867), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 189/472 (40%), Positives = 267/472 (56%), Gaps = 41/472 (8%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDDD L Y V NSG ALE V + FDL+L D +M +G+ T Sbjct: 7 ILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGREPFDLILLDYKMPGKNGLET 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA----- 122 LKEI+ L P+++MTAY +++TA+EA+K GA DYL+KP D + L+ AL Sbjct: 67 LKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLERIARDALEVNRLM 126 Query: 123 ------HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 HS+ + V + ++G MQ + I VA + TVLI G+SGTGKE Sbjct: 127 KEVVSFPAHSLT--SARVPKGEIKIIGNHTRMQEVYKLIGQVANKDVTVLITGESGTGKE 184 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARA++ S R KP + +NCAA+ E+L ESELFG+E+GAFTGA++ G+F GGT Sbjct: 185 LVARALYHHSDRKNKPFLGVNCAAIPETLFESELFGYERGAFTGAERTHIGKFERCHGGT 244 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LF DEI ++ Q +LLRA+Q E++RVG+ Q + VDVR++ AT+++L V GRFR+ Sbjct: 245 LFFDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVATNKNLERAVEQGRFRE 304 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLY+RL +++I +P LR+R EDIP L +FL RF E + ++ A+ L + WPG Sbjct: 305 DLYWRLKIISIHLPPLRERPEDIPALVDYFLVRFGEEYKSPIRRIEDGALAKLKSHAWPG 364 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKE-------- 408 N+RELEN V RAVVL +G+ I E L P D P VE++ Sbjct: 365 NVRELENTVRRAVVLSSGDVIREEHLRFDSGGHE-PSSPEWDKNPWARVERKLEELIPDL 423 Query: 409 -------------------VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++ LE+ G N+ +AAR LG++R TL ++ + Sbjct: 424 LQVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTLRHRMKK 475 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 338 bits (867), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 193/453 (42%), Positives = 286/453 (63%), Gaps = 23/453 (5%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + +LVV+DD + +LQ L G+ V +A R +EQVR D+V+ D+RM ++ Sbjct: 16 REQFTVLVVEDDDAMRDVLQEELGDAGFRVQVAAGARAGIEQVRAGPVDMVITDLRMPDL 75 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG +++I A + P++++TA+ S++TA++A+K GA DY+ KP + D L ++KALA Sbjct: 76 DGFDLIRDINATDSPPPIIMVTAFGSIDTAIKAVKLGAHDYITKPFEIDELVLVIDKALA 135 Query: 123 HT---HSIDAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 +D V S++G ++ S M+ LLS ++ VA S A+VL+ G+SGTGKE Sbjct: 136 ERALRRRVDRLQREVE-SRYGFDNIIAHSSEMRELLSLVSRVATSTASVLLTGESGTGKE 194 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARAIH +S R+E V +N AA+ E+L+ESELFGH KGAFT A + + G F EADGGT Sbjct: 195 LVARAIHYNSPRAEGAFVAVNLAAVPEALVESELFGHTKGAFTDARQSKAGLFNEADGGT 254 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEI +++ +Q +LLRA+QE+E++ VG+ + VDVR++AAT+RDL + G FR+ Sbjct: 255 IFLDEIAEMAAPLQAKLLRALQEQEIRPVGATRPQRVDVRVVAATNRDLQERMAEGDFRE 314 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAER--NRKAVKGFTPQAMDLLIHYDW 354 DLYYRLNV+ IE+P LR+R +DI LA HFL + R ++V+ + +L Y W Sbjct: 315 DLYYRLNVIQIELPPLRRRPDDILPLAEHFLALASARLTPPRSVR-LAAETQRILHSYPW 373 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI--------QPLVEVE 406 PGN+REL N +ER + L G+ I+ +LP + +S D L ++E Sbjct: 374 PGNVRELANVIERGLTLCRGDLIAPEDLPNHVRER-----KSNDFLSAAVARRMNLAQLE 428 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 +E I L++ GGNKT A++LG+ RKTL KL Sbjct: 429 REFIERILKEEGGNKTRTAQRLGLDRKTLYRKL 461 >UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZR73_OPITP Length = 452 Score = 338 bits (867), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 191/448 (42%), Positives = 275/448 (61%), Gaps = 8/448 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ ILVVDD+ + C +Q L+ G+ V AN G AL + ++ ++LV+ D+RM Sbjct: 1 MSEPKARILVVDDERALCAGIQEALQREGHQVDAANDGASALRLLTQKAYNLVVTDIRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 E+DG+ LK +A ++MTA+ VETAVEA++ GA DYL KP+D L+A + KA Sbjct: 61 ELDGMQLLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPVDLKRLRAVVAKA 120 Query: 121 LAHTHSIDAETPAVT-----ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L ++ AE + A ++G+S M+ +++ VA S+ TVLI G+SGTGK Sbjct: 121 L-ELQTVVAENSELRQRLQRAEPGLLLGESEPMRKVVAMAEEVAQSDVTVLIEGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVAR IH SAR++KP + +NCAAL ESL+E+ELFGH KG+FTGA + GRF ADGG Sbjct: 180 ELVARLIHTRSARAKKPFIFVNCAALTESLVEAELFGHAKGSFTGAVADKLGRFHLADGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIGD+ Q LLR +++ + VG ++ V+VR+I AT++ L V AG+FR Sbjct: 240 TLFLDEIGDLGAKGQGDLLRVLEDGAFRMVGGTELQRVNVRVITATNKRLQEAVAAGKFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRL +V I VP LR+R EDIPLL FL+ F +++++ + + +A+ + + WP Sbjct: 300 EDLFYRLQIVPITVPPLRERAEDIPLLIDAFLEHFVQKHKRRRRRLSTEAVQVCRRFPWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELP--LAIASTPIPLGQSQDIQPLVEVEKEVILAA 413 GN+R+L N +ER VV + ELP L + L E EK +I Sbjct: 360 GNVRQLRNVIERLVVTSPNAVVGVEELPDFLVAHDRSTNFFTVRVGMTLAEAEKLLIRQT 419 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 L + N+ EAA+ LGI+R+TL KL + Sbjct: 420 LSQLTSNREEAAQALGISRRTLQYKLKQ 447 >UniRef50_A4CMC3 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=7 Tax=Bacteroidetes RepID=A4CMC3_9FLAO Length = 441 Score = 338 bits (866), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 191/439 (43%), Positives = 270/439 (61%), Gaps = 9/439 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +IL+VDDD+ +LQ L+ GY+ A S ++AL +++ DL++ D++M E+DG+ Sbjct: 7 NILMVDDDVGILELLQRHLQSLGYHTFKALSVKEALFILKDSPIDLLITDIQMPEVDGLQ 66 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH-TH 125 ++ + P +P L++T Y SV A E ++GA DYL KP + L+ + KALA + Sbjct: 67 LVRYAEEHYPGMPKLVITGYPSVAGAQETFRSGAADYLTKPFTREELKQAVRKALASDSR 126 Query: 126 SIDAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 DA T ++ G MVG S ++L+ I+ V + AT+L+HG+SGTGKELVARA+ Sbjct: 127 KPDAPTAPTLSTGAGYAEMVGDSQPFRNLVEIISRVRDNRATLLVHGESGTGKELVARAV 186 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S + P V +NCAA+ E+L E+ELFG+ KGAFT A + R G F A+ GTLFLDEI Sbjct: 187 HYSGKFARGPFVAVNCAAIPENLQEAELFGYVKGAFTDARETRTGFFQAAERGTLFLDEI 246 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G S +Q +LLRA+QE+E+ +VGS + VD+R+IAAT+ +L + FR+DL+YRL Sbjct: 247 GSASQAVQAKLLRALQEKEITKVGSRKTEKVDLRVIAATNSNLREAIAKKEFREDLFYRL 306 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 VV IEVP LR R+ DIPLL FLQ++ R + P+A+ +L Y WPGNIRELE Sbjct: 307 TVVEIEVPPLRDRKSDIPLLTTRFLQKYGVEYRDRLLKIDPEALQILQDYHWPGNIRELE 366 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD-IQPLVEVEKEVILAALEKTGGNK 421 N ++RAV++ G + LP + QD L E+E++ + L TGGNK Sbjct: 367 NVIQRAVIMSDGT-VGPEHLP---GHLKFQIDFPQDGFASLREMERDYVRRVLAHTGGNK 422 Query: 422 TEAARQLGITRKTLLAKLS 440 T AA L I RKTL KL Sbjct: 423 TRAAEILQIDRKTLREKLK 441 >UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XQY9_9BACT Length = 502 Score = 338 bits (866), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 194/494 (39%), Positives = 290/494 (58%), Gaps = 62/494 (12%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM--DGI 65 +L+VDD+++ ++ +LR G+ V + + A+ + ++V+ D+ + + G+ Sbjct: 4 VLLVDDELTMVQMVTEMLRAEGHEVFPYTNFKDAVAALEIHTPEIVVTDLYLDKTRAHGL 63 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L++ +++ P V+++TA+ S+ETAVEA+K GA DYL KP D L +++AL++ Sbjct: 64 EILQKARSITPPASVIVITAFGSIETAVEAMKNGAYDYLEKPFKLDELNLCIQRALSYNE 123 Query: 126 SIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 +I + ++G + MQ + I A +++T+LI G+SGTGKELVAR Sbjct: 124 AISENLYLKKQLKKKYQFSQIIGTAGPMQEVFKMIERTADTDSTILILGESGTGKELVAR 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H +S R P + +NC+AL E+LLESELFGH KG+FTGA ++G F EADGGT+FLD Sbjct: 184 ALHFNSKRQFAPFIPVNCSALPENLLESELFGHRKGSFTGALTDKKGLFQEADGGTIFLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG +S +Q RLLR +QEREV+RVG N ++VR++AAT+ L ++ G FR+DLYY Sbjct: 244 EIGSMSSTLQSRLLRVLQEREVRRVGENVPTYINVRVVAATNEPLEKKIKDGTFREDLYY 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQ-RFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 RLNV++I++PSLR+RR+DIPLLA HFL+ + R+ ++V+ T QA+DLL YDWPGN+R Sbjct: 304 RLNVISIQMPSLRERRDDIPLLAAHFLRNKINPRSGQSVQ-ITRQALDLLTTYDWPGNVR 362 Query: 360 ELENAVERAVVLLTGEYISERELPLAI--------------------------------- 386 ELENA+ERA L I R+LP ++ Sbjct: 363 ELENAIERAATLCEDNLIQIRDLPPSLVRSLGQPPSASTALSADVAQLPQPTTPPTSLVP 422 Query: 387 -------ASTP--IPLGQSQDIQPLVEVE-------KEVILAALEKT----GGNKTEAAR 426 AS P +P G + P + + +E LA L +T GG+K + A Sbjct: 423 IQTAIPGASAPLSVPNGTNPGATPTLHADLSLKDYLREQELAYLNRTLALFGGDKEKTAL 482 Query: 427 QLGITRKTLLAKLS 440 LGI+ TL KLS Sbjct: 483 HLGISLATLYRKLS 496 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 337 bits (864), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 192/443 (43%), Positives = 270/443 (60%), Gaps = 9/443 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILV+DD+ L LL G++V A+ G + + LV DV+MA +DG+ Sbjct: 5 ILVIDDEPGIRQALGQLLEYEGFDVRTASGGAEGITLYDSFRPQLVFLDVKMAGLDGLEV 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK ++ +P V++++ +++++TAVEA + GA D L KPLD D + L A + Sbjct: 65 LKRLRQADPNATVVMISGHATIQTAVEATQLGAYDILEKPLDTDRVLVLLRNAFTNRQLT 124 Query: 128 DAETP--AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 + S++ +VG+S ++ LL I V + A VLI G++GTGKELVARAIH Sbjct: 125 EENDRLRETIESRYEIVGRSFGIRSLLERIERVTGTPARVLITGENGTGKELVARAIHRG 184 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S R+ KP + +NCAA+ L+ESELFGH KG+FTGA R G+F +A GGTLFLDEIGD+ Sbjct: 185 SQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIADRAGKFEQAHGGTLFLDEIGDM 244 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 S Q ++LR +Q+ V R+G ++ + VDVR++AAT++DL E+ AGRFR+DLYYRLNVV Sbjct: 245 SQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAAGRFREDLYYRLNVV 304 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 I VP+LR+RREDIPLL HFLQ+FAER+ + + +A+ L DWPGN+REL N + Sbjct: 305 PITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEALQRLSELDWPGNVRELRNTM 364 Query: 366 ERAVVLLTGEYISERELP-LAIAST--PIPLGQSQDIQPLVEV----EKEVILAALEKTG 418 ER V+L + IS ++ LA T P +G D E E+ +LA L Sbjct: 365 ERLVILASAASISVADIDRLAGRRTAEPSGIGSLLDCNTFEEFKQAAERAFLLAKLRAFD 424 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 N +E AR L + R L K+ R Sbjct: 425 WNVSETARALDMPRSNLYKKIER 447 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 337 bits (864), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 188/452 (41%), Positives = 277/452 (61%), Gaps = 25/452 (5%) Query: 9 LVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATL 68 +VVDD+ + +L LL +G +A++ +A ++E+ +DL L D+R+ + GI L Sbjct: 4 IVVDDEKNISELLSILLSEYGIESDIASTYSEARSFIQEKYYDLALLDLRLPDGSGIDIL 63 Query: 69 KEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSID 128 K+IK NP V+I+TA++S ETAVEA+K GA DY+ KP + ++L+ + ID Sbjct: 64 KQIKEKNPKTEVVIITAFASSETAVEAIKLGAYDYISKPFNINDLRLIIRNV---KEKID 120 Query: 129 AETPAVTASQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 E + G+ GKS A+Q++ I +AP + VLI G+SGTGKE+ A+ IH Sbjct: 121 LERRICVEEEERLEGLAGKSQAIQNVKDTIKKIAPYDINVLIVGESGTGKEVAAKMIHRL 180 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S+R KP V +NCA+L LLESELFG++KGAFTGA ++G EA+GGTLFLDEIG++ Sbjct: 181 SSRKNKPFVAINCASLPAELLESELFGYKKGAFTGAVSDKKGLIEEANGGTLFLDEIGEM 240 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 +Q +LLR ++E+ ++ +GS + I VDVR+I+AT+R+L E+ G FR+DLYYRL + Sbjct: 241 PMPLQAKLLRFLEEQIIRPLGSTKEIKVDVRIISATNRNLEEEIKKGNFREDLYYRLATI 300 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 I++PSLR+R+EDIPLL L+ + K +K +P M LI YD+ GNIREL+N + Sbjct: 301 IIKMPSLRERKEDIPLLVEQILKEIKMKYNKNIKRISPDFMKYLISYDYKGNIRELKNLL 360 Query: 366 ERAVVLLTGE---------------YISERELPLAIASTPIPLGQSQDIQP-LVEVEKEV 409 E+AV+L GE YI E + S P + D++ L +EK + Sbjct: 361 EKAVILSDGEELNFIPAFPEKFNSLYIDNPEDEFTVKSFP---EEGVDLKEVLSRIEKAL 417 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I ALEK G K++AA L +T + +LS+ Sbjct: 418 IFKALEKAEGKKSKAADILRLTFREFRYRLSK 449 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 337 bits (864), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 190/441 (43%), Positives = 272/441 (61%), Gaps = 17/441 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV-----FDLVLCDVRMAEM 62 IL+ DDD + L+ L GY V A +G A+ DL+L D+R+ M Sbjct: 4 ILIADDDKAIRRTLELHLTEVGYRVVTAANGSDAVNLALADTAIGHNIDLMLLDLRLTGM 63 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK--- 119 DG L +K P +P++++TAY ++TA++A++ GA+D+L KP+D D+L ++K Sbjct: 64 DGFEVLTLVKEKKPFLPIIMITAYDEMQTAIKAIRLGAIDHLGKPVDLDHLDEVIDKIFE 123 Query: 120 --ALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 AL+ T +++ Q MVG++ AM+ + I VA S ATVLI G+SGTGKE+ Sbjct: 124 MSALSRTGVTFSDSFDPHFEQNIMVGRTRAMKEVYKTIGAVADSRATVLIQGESGTGKEM 183 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH +S +P + + C+AL+ ++LESELFGHEKGAFTGA + + G+F A GGTL Sbjct: 184 VARAIHFNSQFRNRPFIAVACSALSPTILESELFGHEKGAFTGAIRTKPGKFELAQGGTL 243 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEI +ISP +QV+LLR IQERE +RVG + I DVR++AAT+++L+ V +G FR D Sbjct: 244 FLDEISEISPEIQVKLLRFIQEREFERVGGIETIKADVRIVAATNKNLSTLVASGMFRND 303 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRL VV+I++P LR+R+EDIP+L L++ K V+ + M+ ++ + WPGN Sbjct: 304 LYYRLKVVSIDLPPLRERKEDIPILVKFLLEKLHHETGKRVEIIPQETMNKILEHSWPGN 363 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD---IQPLVEVEKEVILAAL 414 +RELEN + RAV+L G + L L GQ + ++PL EVE+E I L Sbjct: 364 VRELENTLRRAVILSHGNMLLPESLHLEEGCD----GQERFPLLLKPLHEVEREHIQNVL 419 Query: 415 EKTGGNKTEAARQLGITRKTL 435 K AA LGI+R TL Sbjct: 420 CYVRNEKKRAAEILGISRPTL 440 >UniRef50_B9XL82 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XL82_9BACT Length = 476 Score = 337 bits (864), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 190/458 (41%), Positives = 272/458 (59%), Gaps = 26/458 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+++DD L+ +L GY V+ G L FD+V+ D+++ +DG+ Sbjct: 7 LLLIEDDAGAADALRRVLVNEGYTVSCEGRGDSGLGTAETINFDVVISDLKLPGLDGLEL 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH-- 125 +K + P +P+++MTA+ + ETA+EA K GA DYL+KP + + L +EKA+ + Sbjct: 67 VKRLHQAKPRLPIILMTAHGTTETAIEATKLGAYDYLLKPFEMEELLDLVEKAVESSRLM 126 Query: 126 SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 S + +++ ++G S MQ + EI VA TVLI G++GTGKEL+ARAI+ Sbjct: 127 SEPVKMGECVSARNAIIGNSRLMQGIYKEIGRVAAKPITVLIRGETGTGKELIARAIYQH 186 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S RS P V +NCAA+ E+LLESELFGHE+GAFTGAD RR GRF +A GGTLFLDEIGD+ Sbjct: 187 SDRSAAPFVAVNCAAIPETLLESELFGHERGAFTGADMRRIGRFEQASGGTLFLDEIGDM 246 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 S Q +LLR +QE+ + R+G + I +D R+IAATHRDL ++ +FR+DLYYRLNV Sbjct: 247 SLNTQAKLLRVLQEKYIHRLGGREPIPIDARVIAATHRDLEKALHDKQFREDLYYRLNVA 306 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 I+ P+LR R EDIP L + +Q + P+A+ L + WPGN+RELEN V Sbjct: 307 VIKTPALRHRSEDIPNLVRYLMQIYGADFDIESPSIQPEALQFLQNQPWPGNVRELENVV 366 Query: 366 ERAVVLLTGEY-ISERELPLAIASTPIPL-GQSQDIQPLV-------------------- 403 R V+LL G Y IS + +A + G +Q I + Sbjct: 367 -RQVLLLAGRYTISIEHVREVVAKVGEAVAGGNQSIAAGIGTYLSRARRGEMEGVHATVI 425 Query: 404 -EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 EVE+E+ A+E GN+ +AAR LG++R T+ KL+ Sbjct: 426 EEVERELFGQAIELAQGNQAKAARWLGVSRITMREKLN 463 >UniRef50_A6KXD6 Two-component system response regulator n=40 Tax=Bacteroidetes RepID=A6KXD6_BACV8 Length = 460 Score = 337 bits (863), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 192/451 (42%), Positives = 279/451 (61%), Gaps = 20/451 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+DD++ T+L+ L G++V A+S +A +Q+ Q +DLVL D+R+ + DGI Sbjct: 5 ILIVEDDLTFATMLKTWLGKKGFSVDTASSNARARKQLDAQPYDLVLSDLRLPDQDGIFL 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNL-----QATLEKALA 122 L +K IP++IMT Y+ +++AV+A+K GA DY+ KP+ D L +A KAL Sbjct: 65 LSWMKEQKYNIPLIIMTGYADIQSAVQAIKHGASDYISKPIQPDELLKKINEALQNKALP 124 Query: 123 HTHSIDAETPAVTASQFGMV-------------GKSPAMQHLLSEIALVAPSEATVLIHG 169 I+ T A AS+ V G+S A + L + + LVAP+ +VLI+G Sbjct: 125 TPVGIEKNTVAPKASKNKAVPHSATVPPSNFLEGESEAARQLYNYVGLVAPTPMSVLING 184 Query: 170 DSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF 229 SGTGKE VA IH S R++KP + ++C ++ + L SE FGH KG+FTGA + G F Sbjct: 185 ASGTGKEYVAHRIHQLSKRADKPFIAIDCGSIPKELAASEFFGHVKGSFTGALNDKTGAF 244 Query: 230 VEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEV 289 VEA+GGTLFLDEIG++S +Q++LLRA+QER ++ VGSN+ I VDVRL++AT+ +L + Sbjct: 245 VEANGGTLFLDEIGNLSYEVQIQLLRALQERRIRPVGSNKEIEVDVRLVSATNENLQQAI 304 Query: 290 NAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLL 349 G FR+DLY+R+N + +P+L++R+EDI L A FL + + + GF A L Sbjct: 305 EKGNFREDLYHRINEFTLRMPALKERQEDILLFANFFLDQANRELDRQLIGFDTAASQAL 364 Query: 350 IHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE-VEKE 408 Y WPGN+R+L+N V+RA +L +I+ EL + PI Q E EK+ Sbjct: 365 QTYSWPGNLRQLKNIVKRATLLAQSNFITLAELGYEL-QEPIRSAGPQTFSLHDEAAEKK 423 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKL 439 IL AL++TG NK++AA LGI RKTL KL Sbjct: 424 RILEALKQTGNNKSKAAILLGIDRKTLYNKL 454 >UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDW1_DESAA Length = 477 Score = 337 bits (863), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 188/463 (40%), Positives = 271/463 (58%), Gaps = 28/463 (6%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILV+DD+ + C + +L Y + A +G +A+E + ++ FDLV+ D++M Sbjct: 1 MPEPKAKILVIDDEEAICRNCEKILTRSNYEIKWALNGYKAMEMMYKEAFDLVITDLKMN 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M G+ L +K P V+++T Y+SV +AVE +KTGA DYL KP D L+ + +A Sbjct: 61 SMGGLEVLSRVKDEWPQTQVVVITGYASVSSAVEVMKTGAFDYLPKPFTPDELRGAVRQA 120 Query: 121 LAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 LA + P V + +VG SP MQ ++ +A AP++ VLI+G+SGTGK Sbjct: 121 LAPEELFNNAKPDVKKISRKITTHQLVGDSPQMQGVIRMLAKAAPTDTNVLIYGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E++ARAIHA+S R + ++C AL E+LL+SELFGH KGAFTGA K ++G F ADGG Sbjct: 181 EVIARAIHANSRRKGEVFFAVDCGALAENLLQSELFGHTKGAFTGAVKDKKGIFELADGG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDE+ IS +Q LLR ++ REV VG + VDVRL+ AT++DL V+ G+ R Sbjct: 241 TVFLDEVSSISMSIQSNLLRFLETREVLPVGGAAPVKVDVRLVFATNQDLKEMVSQGKLR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +D YYR+ V I P LR+RR DI +A HFL F+ K ++ F+P A ++L+ + WP Sbjct: 301 EDFYYRIMVYPIFTPPLRERRADILPIAYHFLDLFSHSMSKDIRSFSPDAAEILLDHSWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELP--------------------LAIASTPIPLGQ 395 GN+R+L NA+ERAV+L G I+ REL + + L + Sbjct: 361 GNVRQLRNAIERAVILCEGRTITARELEHLQDKPGEEHHQAAYTITHDYQVPANAEELKE 420 Query: 396 SQDI--QPLVE-VEKEVILAALEKTGGNKTEAARQLGITRKTL 435 ++ I Q VE VE++ + ALE GN T AA Q G+ R Sbjct: 421 AKKIIRQLAVEQVERDFLTQALENADGNITRAAEQAGMQRSNF 463 >UniRef50_B4D072 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B4D072_9BACT Length = 473 Score = 336 bits (862), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 178/376 (47%), Positives = 246/376 (65%), Gaps = 6/376 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+++D+ + + L A+ + G++ L +SG++ LE++ F L + D+ + +M G+ Sbjct: 11 ILIIEDEHAVASALGAICKRLGHDAQLCSSGQRGLEELARGDFALAILDIGLPDMSGLEV 70 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK+I+ PAIP LI+TA+ +++ AV A K GA YL+KPLD +Q T+ + LA ++ Sbjct: 71 LKQIRRRAPAIPSLIITAHGNLDNAVAAKKLGAAGYLVKPLDLPEVQETIRQ-LASPAAV 129 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 TP+V AS ++G +PAMQ EIA S+A VLI G +GTGK L AR IH +SA Sbjct: 130 --PTPSVQASPSLLIGAAPAMQRCFVEIAHACTSDAPVLISGPTGTGKTLAARVIHTNSA 187 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 RSE P VTL+C+AL E LLESELFGHEKG+FTGA REG A GGTLFLDEI DISP Sbjct: 188 RSEAPFVTLHCSALPEHLLESELFGHEKGSFTGALTSREGHLERARGGTLFLDEIADISP 247 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 +Q +LLR ++ER RVG + + VD+RL+ AT++DL EV AGRFR+DLYYRL+V+ I Sbjct: 248 AIQAKLLRFVEERTFTRVGGREDLRVDLRLVTATNKDLREEVRAGRFREDLYYRLHVLEI 307 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 +P+LR+R DI LA +FL + + P +DLL Y WPGN+REL NA+E Sbjct: 308 TMPALRERPGDIAALATYFLGSIGGTQPRQL---APATLDLLQRYTWPGNVRELRNALEH 364 Query: 368 AVVLLTGEYISERELP 383 A+ + +G I P Sbjct: 365 AIAVSSGGVILPHHFP 380 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 336 bits (862), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 187/445 (42%), Positives = 273/445 (61%), Gaps = 11/445 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L++DD+ + LQ LL GY V A G L Q+ +DLVL D + + +GI Sbjct: 22 VLIIDDEAAIRESLQTLLELEGYQVDTAVDGGDGLMQMAAHPYDLVLLDFALPDRNGIEI 81 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA----H 123 LKEI++ + I V+++TAY +VE AV A++ GA +++ KP D + L A + A+A Sbjct: 82 LKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQKPWDNEKLLADVGAAIARRRVE 141 Query: 124 THSIDAETPAVTASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 ++ + F ++GKS M + + +APS +TVL+ G+SGTGKEL+A+AI Sbjct: 142 EENLQLKRALKQRYNFENIIGKSEPMLRIFDLVTQIAPSRSTVLLQGESGTGKELIAKAI 201 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R ++ V +N ++ LLES LFGH KGAFT A ++G F ADGGTLFLDEI Sbjct: 202 HMNSTRKDRAFVPINTGSMPTDLLESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLDEI 261 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G +S Q ++LR +Q+R+ +G Q I VDVR+IAAT+ DL V G+FR+DL+YRL Sbjct: 262 GTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFYRL 321 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ I++P LRQRR D+PLL HF+++F E N K + TP+A+ L+ Y+W GN+RELE Sbjct: 322 NVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMRMTPEALRPLLDYNWQGNVRELE 381 Query: 363 NAVERAVVLLTGEYISERELPLAIA--STPIPLGQSQDIQPLVEV----EKEVILAALEK 416 N +ERAVVL G I+ LP + + + +++ L E+ E+ +I+ LEK Sbjct: 382 NVIERAVVLANGPSITIDLLPDNVVGRGSSLSFVETRPDASLFEIMEDCERRIIVDMLEK 441 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 G N+TEAA + I TL K+ R Sbjct: 442 VGWNQTEAAEKFRIPLSTLNQKIKR 466 >UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verrucomicrobia RepID=B5JMF6_9BACT Length = 518 Score = 336 bits (862), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 177/384 (46%), Positives = 253/384 (65%), Gaps = 11/384 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL++DD++ L+ LR ++V + +A E + + +DL+ DV + + +G Sbjct: 6 ILILDDELVIRKALEEQLRRKRFSVCSVGTLSEADEHLSKDEYDLLFVDVHLPDGNGTEL 65 Query: 68 LKEIKAL-NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA-----L 121 L+ + ++ NP + V+I+T Y +VE+AV+ ++ GA DY+IKP + ++KA L Sbjct: 66 LERVSSMQNPPL-VVIITGYGTVESAVKCMQAGAFDYIIKPFSSSQIDVLIKKARDYRQL 124 Query: 122 AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + A V+ ++GKS + L I VAP+EATVLI G++GTGKELVA Sbjct: 125 VRVNQFLASESTVSGE---LIGKSGFINQLKDVIRKVAPTEATVLICGENGTGKELVANE 181 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 ++ SAR P + +NCAA++ESL+ESE FGHEKGA+TGA +RREGRF ADGGT+ LDE Sbjct: 182 LYRCSARKSAPFIRVNCAAISESLIESEFFGHEKGAYTGATQRREGRFELADGGTILLDE 241 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 I +ISP +Q +LLR +QERE +RVG N+ I VDVR+IA T+R+LA V G FRQDLYYR Sbjct: 242 ISEISPKVQAKLLRVLQEREFERVGGNKTIKVDVRVIATTNRNLAQSVERGMFRQDLYYR 301 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV I+VP LR R D+ LLA +F Q F ++ K +KGF P+A++ L + WPGN+REL Sbjct: 302 LNVFPIQVPPLRDRDGDVVLLAKNFAQSFGRKHGKQIKGFAPEAVEALERHPWPGNVREL 361 Query: 362 ENAVERAVVLL-TGEYISERELPL 384 +N VERAV+L +G+ I++ L L Sbjct: 362 QNTVERAVILAESGQPIAQGHLGL 385 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/40 (57%), Positives = 31/40 (77%) Query: 401 PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 PL E+EK+ ILA LE T GN+T+AA+ LGI+ +TL K+S Sbjct: 466 PLEEIEKKHILATLETTDGNRTQAAKLLGISIRTLRNKIS 505 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 336 bits (862), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 177/373 (47%), Positives = 244/373 (65%), Gaps = 3/373 (0%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+VDD+ + L L+ GY LANSG+ AL+ V + D VL DV+M +MDG+ Sbjct: 5 VLIVDDEKNILLTLSQSLQLAGYQTHLANSGQVALDVVSARPVDAVLMDVKMPDMDGLTA 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L ++ L P +PV++M+ + +++TAV+A + GA D+L KP+ + L L L H ++ Sbjct: 65 LAKLTELKPELPVIMMSGHGTIDTAVKATQLGARDFLEKPIARERLLVALRNVLKHQAAM 124 Query: 128 DAETPAVTA--SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 AE + A ++ MVG PAMQ + S I APSE VLI G++GTGKEL+ARA+H Sbjct: 125 -AELQELRAQLGRYDMVGSGPAMQRIFSLIQRTAPSEGRVLITGENGTGKELIARALHQH 183 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S R +P V LNCAA+ L+ESELFGHEKGAFTGA R G+F A GTLFLDEIGD+ Sbjct: 184 SKRKGQPFVKLNCAAVPHELIESELFGHEKGAFTGAVSVRRGKFELAHEGTLFLDEIGDM 243 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 MQ +LLR +QE E++RVG + VDVR++AAT+++L AE+ AGRFR+DLYYR+NVV Sbjct: 244 PQAMQAKLLRVLQEGELERVGGAETHKVDVRVVAATNKNLEAEIAAGRFREDLYYRINVV 303 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 I P LR+RRED+P L FL +N + +P A+ ++ YD+PGN+REL N V Sbjct: 304 QIHSPPLRERREDLPDLIKTFLDEACAKNGRRPLTLSPDALAVMSAYDYPGNVRELRNLV 363 Query: 366 ERAVVLLTGEYIS 378 ER +L G ++ Sbjct: 364 ERLAILCEGPIVT 376 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 189/451 (41%), Positives = 274/451 (60%), Gaps = 18/451 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL++DD+ C +Q +L G G+ V A SG++A + V + DL L D+ + DGI Sbjct: 4 ILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLGSEDGIEV 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK +K +P + V+I+T Y SVE+AVE+L+ GA Y+ KP D L+ ++ AL T ++ Sbjct: 64 LKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFKADALRLIVKLAL-KTQTL 122 Query: 128 DAETPAVTASQFGMVGKSP------AMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 E + + + G+SP A Q + +++ +A +TVLI G+SGTGKE+VARA Sbjct: 123 KREVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVARA 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R E+ + +NCA++ LLESELFGHEKGAFTGA R++G F EA GT+FLDE Sbjct: 183 IHDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFLDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ MQV+LLR +QER ++RVG+ + I +D R+IAAT+R+LA + FR+DL+YR Sbjct: 243 IGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLFYR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV I +P LR+R DI LA +FL F+ + + +P+A L+ Y WPGN+REL Sbjct: 303 LNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVREL 362 Query: 362 ENAVERAVVLLTGEYISERELPLAIAST----------PIPLGQSQDIQPLVE-VEKEVI 410 N +ER ++ +G + LP I ST PI + ++ V +EK +I Sbjct: 363 RNVIERICIMRSGPTLLPEHLPQEIRSTVAPPPLPAELPISIAADLGLEEAVSAIEKSLI 422 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL+KTG N + A L I R TL K+ + Sbjct: 423 QQALQKTGWNVLQTAANLKIPRGTLRYKMEK 453 >UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7U7_9BACT Length = 462 Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 202/462 (43%), Positives = 289/462 (62%), Gaps = 29/462 (6%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 D+ IL+VDD+ + + LR +NVA A G +A+E ++ + FDLVL D+RM + D Sbjct: 3 DSARILIVDDEHNTREAMARYLR-LRFNVATAADGGEAIELLKHEDFDLVLTDLRMPKAD 61 Query: 64 GIATLKEI--KALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE--- 118 G++ L+ KA PA +++TAY S+ AV A+K GA D++ KP+ D L+A ++ Sbjct: 62 GMSVLEATASKANRPA--CILLTAYGSIGDAVAAVKKGAFDFVAKPVKLDKLEAVIDAAL 119 Query: 119 ---------KALAHTHSIDAETPAVTASQFGMV--GKSPA--MQHLLSEIALVAPSEATV 165 KA ++ A PAV A G+V PA M ++S + VAP+ +TV Sbjct: 120 AARRKAAEDKAAQAEATVAATAPAVAAPPPGIVLPTDDPANPMTKVMSLVKTVAPTRSTV 179 Query: 166 LIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRR 225 L+ G+SGTGKE+ AR IH S R+ V ++CAAL +LLESELFG+EKGAFTGA +R Sbjct: 180 LLTGESGTGKEVFARMIHDWSGRTGY-FVPVHCAALTATLLESELFGYEKGAFTGAAERH 238 Query: 226 EGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDL 285 +GRF AD GTLFLDEIG+I P QV+LLR ++ R +RVG + I VDVRL+AAT+RDL Sbjct: 239 KGRFEVADHGTLFLDEIGEIDPATQVKLLRVLETRSFERVGGTETIKVDVRLVAATNRDL 298 Query: 286 AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQA 345 V+ G FR+DL+YRL+VV +E+P LR R+ DIP L F+ FA N + V G P A Sbjct: 299 RKMVSEGTFREDLFYRLSVVNLELPPLRDRKSDIPGLIHSFIAEFARENERDVTGIAPDA 358 Query: 346 MDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIAS--TPIPLGQS-----QD 398 + L+ Y WPGNIREL N +E VVL + + + ++P A+ + P+P G + + Sbjct: 359 LAELVAYPWPGNIRELRNCIECMVVLAREKILRKSDIPEAVRNHENPVPPGSAATAPEPE 418 Query: 399 IQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 I+ E+++I AL + GN+T+AA+ LGI+R+TL +L+ Sbjct: 419 IETFENSERKLIEKALAECNGNRTQAAKLLGISRRTLHRRLA 460 >UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR5_9BACT Length = 442 Score = 335 bits (860), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 184/446 (41%), Positives = 275/446 (61%), Gaps = 18/446 (4%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + IL+++D++S T++ L + A +G + L+ + E+ +D+++ D+RM M G Sbjct: 1 MSILLIEDNLSLSTLVSMYLTSENIDNDTAPNGYEGLKLLSEKEYDVLITDIRMPGMSGN 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 +++ L P +PV+I+TA+ ++ AV A++ GA DYL KP + + L +++KA+ + Sbjct: 61 EVMEKAAKLYPDMPVIIITAHGNIPDAVAAIRKGAYDYLTKPFENEELLNSIKKAVEISR 120 Query: 126 SIDAETPAVTASQF-------GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 T Q+ MVGKS A +L+ VAP++A VL+ G+SGTGKEL+ Sbjct: 121 MRRENT---RMKQYMKQSIAPKMVGKSEAFIQMLNLADTVAPTDAPVLVLGESGTGKELI 177 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 AR +H+ S R++KP +T+NCAA+ E L ESELFGH+KG+FT AD+ +G+ +EA+GGTLF Sbjct: 178 ARQVHSKSNRADKPFITVNCAAVPEGLFESELFGHKKGSFTSADRDYKGKILEAEGGTLF 237 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG++ +QV+LLR +QE E+Q VGS + VDVR++AAT+R L G FR DL Sbjct: 238 LDEIGELPQSIQVKLLRFLQESEIQPVGSATPMKVDVRVVAATNRSLKQMTEKGEFRDDL 297 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRLNV +EVP L +RREDI L F ++ R F+ +AM+ LI+Y W GNI Sbjct: 298 FYRLNVFPVEVPPLSKRREDIKDLVELFSAKYGAR-----ITFSEKAMEKLINYSWTGNI 352 Query: 359 RELENAVERAVVLLTGEYISERELPLAIAS---TPIPLGQSQDIQPLVEVEKEVILAALE 415 RELEN + R +L I+E +LP S T + + L E+EK +I+ AL Sbjct: 353 RELENTIYRLCILQGKGEITEDKLPAEFCSNMETCLDMHMPDKELNLEELEKNIIIKALH 412 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 K GNK+ AA+ L I R LL +L + Sbjct: 413 KFDGNKSRAAKYLCIPRHVLLYRLEK 438 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 335 bits (860), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 186/455 (40%), Positives = 278/455 (61%), Gaps = 21/455 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LV+DD+ + ++ +L + V +G ALE+++++ FDLV+ D++M + G+ Sbjct: 7 LLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISGMEV 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK IK + P +PV+ +T YSSV++AVE +K GA+DY+ KP + + +T+ AL Sbjct: 67 LKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALEQRVVD 126 Query: 128 DAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + + + G VGKS M + I VAP+++TVLI G+SGTGKELVARAI Sbjct: 127 LGDLYLLKELRDGEGFDRFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGKELVARAI 186 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R + P V ++C +L E+LLESELFGH KG+FTGA + G F A+GGTLFLDE+ Sbjct: 187 HKHSQRRDHPFVAVDCTSLVENLLESELFGHVKGSFTGAMHTKTGLFKVAEGGTLFLDEV 246 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 ++S Q +LLR +QEREV +G Q +++RL+AAT+R L V G FR+DL++RL Sbjct: 247 SNLSLTTQAKLLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFREDLFFRL 306 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 N++ +++P LR+R DIPLL GH ++ AE K +KG T AM +L Y +PGN+RELE Sbjct: 307 NIIPMDLPPLRERTGDIPLLVGHTVRTVAEEVGKDIKGVTAGAMQVLQSYSFPGNVRELE 366 Query: 363 NAVERAVVLLTGEYISERELPLAIASTP--------IPLGQSQ--------DIQPLVEVE 406 N +ERAVVL I+ +L L A++P +PL + Q + ++E Sbjct: 367 NIIERAVVLAEDSLITPDDLELNHAASPTVLLDYTAVPLSVEELKETKRHLREQAVEDIE 426 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 K ++ AL++ GN T AA + G+ R A + + Sbjct: 427 KAFVVNALQRNRGNITRAAEETGMLRPNFQAMMKK 461 >UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MTS9_9DELT Length = 465 Score = 335 bits (859), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 187/441 (42%), Positives = 272/441 (61%), Gaps = 8/441 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVV+DD + +LQ L GY V +A G L + R++ F++VL DV+M +DGI T Sbjct: 12 VLVVEDDSALRELLQMELARSGYKVEVALDGEDGLRKYRDENFNVVLLDVKMPGVDGIET 71 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH-- 125 L++++A +++ T + S+ETAVE +K GA DYL KP+ D L+ ++KA Sbjct: 72 LRQMRAETIVPEIIMFTGHGSIETAVECIKYGAYDYLTKPVKLDELEMVIDKAYEKNRLR 131 Query: 126 --SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 +I+ + +VG+SPA+ +L + P+E VLI+G+SGTGKEL++RA+H Sbjct: 132 LENINLKLEVSKLDNHRVVGRSPALMKVLDVVRRWGPAEEHVLIYGESGTGKELISRAVH 191 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 +S R+EKP VT+NC LN + ESELFGH +GAFTGA+K R G F AD GTLF+DE+ Sbjct: 192 DASPRAEKPFVTVNCGRLNINTAESELFGHTQGAFTGANKGRAGLFELADTGTLFMDEVS 251 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 + +QV+LLR ++ +R+G N ISVDVR + A++++L VN G FR+DLY+R+N Sbjct: 252 ETPLDVQVKLLRVLETGTFRRMGGNHDISVDVRFVFASNKNLQECVNRGEFREDLYHRIN 311 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 ++ I +P LR+R EDI LA F++ A R + + T +AM L Y WPGN+REL N Sbjct: 312 LLPINLPPLRERPEDILPLAYFFMKSAAGREDENWE-ITEEAMAALTAYSWPGNVRELRN 370 Query: 364 AVERAVVLLTGEYISERELPLAIAST--PIPLGQSQDIQ-PLVEVEKEVILAALEKTGGN 420 + RA +L T + I+ LP + P + + Q PL VE++ I LE+ GN Sbjct: 371 TIRRACILATDQQITSELLPFSPPRVLPPRQVSPAAPTQLPLWVVERDHIERVLEQVEGN 430 Query: 421 KTEAARQLGITRKTLLAKLSR 441 K+ AA+ L I RKTL KL R Sbjct: 431 KSRAAKILEIDRKTLYTKLER 451 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 335 bits (858), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 187/457 (40%), Positives = 275/457 (60%), Gaps = 24/457 (5%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 N +L+VDD+ L+ +L GY VA A +G + L+ E DL+ D+ + MDG Sbjct: 2 NARVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L ++ + ++PV++++ + ++ETAV A+K GA D++ KPL + + + KAL + Sbjct: 62 LEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEY- 120 Query: 125 HSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + + E A+ ++ M G S ++ L +I VAP++A VLI G++GTGKE+ A Sbjct: 121 YRLRRENQALRSRLTQSTTVEMTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIAA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 R+IHASS R +KPLV +NCAA+ E L+ESELFGHEKGAFTGA+ + G+F A GTLFL Sbjct: 181 RSIHASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAETAKTGKFEMAHQGTLFL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEI D+S Q ++LR +QE+ +RVG ++ + VDVR+IAAT++ L E+ AGRFR+DLY Sbjct: 241 DEIADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGRFREDLY 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRF-AERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YRL V+ + VP LRQR +D+ LL G F+ R AE + V F P A L+ Y WPGN+ Sbjct: 301 YRLRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVT-FAPDACSALLCYHWPGNV 359 Query: 359 RELENAVERAVVLLTGEYISERELP-------LAIASTPIPLGQSQDIQP---------L 402 REL+N VER +++ +G+ ++ LP I P G S + P Sbjct: 360 RELKNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMIPEGVMDFKAAR 419 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 E + A L++ GGN T A +G+ R L KL Sbjct: 420 TAFEARFLEAKLQEFGGNITRLAEAIGLERSYLYRKL 456 >UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=C6NWM8_9GAMM Length = 447 Score = 335 bits (858), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 185/439 (42%), Positives = 269/439 (61%), Gaps = 15/439 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+V+DD+ +L L G V A G++AL ++R+ FDL+L D +M MDG Sbjct: 8 VLLVEDDVDFAEVLAEGLEEAGMEVQQAADGKEALNRLRDGQFDLILSDAQMQPMDGYGL 67 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L ++A PV++MTA+ +++ AV AL+ GA+DYL+KP L L++ H Sbjct: 68 LAALRAQPGHPPVVMMTAWGTIDEAVRALQNGAVDYLVKPFAMQELLTKLQR---HER-- 122 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 ++ + SP M L + VA +EA+VL+ G+SG GKE++AR IH S Sbjct: 123 -----LQPGAELEPLAHSPVMLETLIKARRVAQTEASVLLTGESGVGKEVLARFIHRESN 177 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 R+ +P V +NCAA+ ESLLE+ LFGHEKGAFTGA + G+F +A GGTL LDE+ +++ Sbjct: 178 RAREPFVAVNCAAIPESLLEATLFGHEKGAFTGASQSSPGKFEQAQGGTLLLDEVTEMAL 237 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 +Q +LLR +QERE++RVG + I +DVR+IA ++RDL V+ G+FR+DLYYRL V+ + Sbjct: 238 PLQAKLLRVLQERELERVGGRRTIRLDVRVIATSNRDLRQAVSEGKFREDLYYRLQVIPL 297 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 VP LRQRREDI LA L + ER A K P+A +L+ Y WPGN+REL+NA++R Sbjct: 298 CVPPLRQRREDILPLAQRLLAKHCERMAIAPKSLDPEAQAVLLSYPWPGNVRELDNALQR 357 Query: 368 AVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE-----VEKEVILAALEKTGGNKT 422 A + I +L L I T +P++E E+E I++ L + G++ Sbjct: 358 AAIFSADTVIRSDDLGLEIRGTLDDARSEGSSRPILEDVRSRQEQETIVSVLRECRGSRN 417 Query: 423 EAARQLGITRKTLLAKLSR 441 EAAR+LGI+ +TL KL R Sbjct: 418 EAARRLGISPRTLRHKLQR 436 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 335 bits (858), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 194/479 (40%), Positives = 277/479 (57%), Gaps = 43/479 (8%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 H + ILVVDD+ + + + + + A+SG +ALE +R+ +++ D RM M Sbjct: 4 HADYPILVVDDEQDNLDAFRFNFK-RAFRLLCASSGEEALEILRDNEVAVIVTDQRMPRM 62 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGAL-DYLIKPLDFDNLQATLEKAL 121 G+ L + + P +I+TAY+ ++ V+A+ G + Y+ KP + L+ L AL Sbjct: 63 TGLELLLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYRYVTKPWEAKELRGILTHAL 122 Query: 122 A-----------------HTHSIDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEA 163 +T ++ E A FG ++G S A+ +LS++ VAP+ + Sbjct: 123 ERYALLRENQRLMAQLREYTGYLNQEIHG--AFDFGNIIGDSAALGEVLSKVEQVAPTNS 180 Query: 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADK 223 TVL+ G++GTGKELVA AIH +S+R +P V +NCAAL +LESELFGHEKGAFTGA Sbjct: 181 TVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFGHEKGAFTGAVA 240 Query: 224 RREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHR 283 +R GRF ADGGTLFLDE GD+ +Q++LLRA+QERE +RVG Q I VDVR+I+AT+R Sbjct: 241 QRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRVISATNR 300 Query: 284 DLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTP 343 DL A + AG FR+DLYYRLNV I +P LR R ED+P L HF+ +FA G Sbjct: 301 DLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVRG 360 Query: 344 QAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLA--------IASTPIPLGQ 395 A+D L Y WPGN+RELEN +ERA++L G + L ++ TP + + Sbjct: 361 AALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNATPVSGTPSVISE 420 Query: 396 SQDIQP-------------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + P L++ E+ I+AA+EK+ N AAR LGI R TL ++ + Sbjct: 421 TASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARMLGINRSTLYYRMRK 479 >UniRef50_A9FIF3 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FIF3_SORC5 Length = 460 Score = 334 bits (857), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 188/443 (42%), Positives = 269/443 (60%), Gaps = 12/443 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LV+DD+ + T LQ L GY V +A A E++ ++ +D+ L DV + + DG+ Sbjct: 6 VLVLDDERAILTTLQKALSLEGYTVDVAGGVGVAEEKLAKRSYDIALFDVSLPDGDGVEL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ I+ +PV++M+ +++V+ AV A + GA+D+L KPL D L LE L + Sbjct: 66 LQRIRVSGSELPVVMMSGHATVDAAVRATRLGAIDFLEKPLSTDRLLLVLENTLRLVRA- 124 Query: 128 DAETPAV--TASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 +AE A+ Q G ++G+S AM L +IA A + ATV + G+ GTGKELVARAIH Sbjct: 125 EAEAKALRTQTGQVGELIGESRAMLDLREQIARAAKATATVFVTGERGTGKELVARAIHG 184 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 +S R+ PL +NCAA+ L+ESE+FGHE GAFTGA K+R G+F A GGTLFLDE+GD Sbjct: 185 ASKRARGPLEKMNCAAVPSELIESEMFGHEAGAFTGATKQRRGKFERASGGTLFLDEVGD 244 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + MQ +LLR +QERE++RVG ++ I VDVR++AAT+RD+ A G+FR DLY RLNV Sbjct: 245 MPLAMQAKLLRVLQEREIERVGGHETIKVDVRVVAATNRDIEAACREGQFRPDLYDRLNV 304 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 + + +P LR RRED+P LA HFL + N + FT M +L+ Y +PGN+REL N Sbjct: 305 LPLSLPPLRARREDVPQLARHFLALATQANDRPGMAFTDGGMGVLVAYSFPGNVRELRNI 364 Query: 365 VERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV-------EVEKEVILAALEKT 417 +ER V+L E I E ++ + + + + +P V E E+ ++ AL Sbjct: 365 IERLVILTPDETIDEGDVKVCLGGQQAAM-KGGLFRPGVPFRVLAEEAERAILEEALGHH 423 Query: 418 GGNKTEAARQLGITRKTLLAKLS 440 GG AR LG+ R L K Sbjct: 424 GGQMAATARGLGLERSHLYKKFK 446 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 334 bits (856), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 174/386 (45%), Positives = 252/386 (65%), Gaps = 6/386 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQV-REQVFDLVLCDVRMAEMDGIA 66 IL+ DDD +L + GY A G + L ++ ++ +DL++ DVRM DG+ Sbjct: 10 ILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDVRMPGQDGLT 69 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L++++ PV++MTA+ + TA+ A++ GA DY+IKP D + + +++ H Sbjct: 70 ILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVVKRLFDH-QQ 128 Query: 127 IDAETPAVTASQFG----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + ++ + A F M+G SPAMQ + +I VA ++ATVLI G++GTGKE++A I Sbjct: 129 LASKVRELEAKSFDPRDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTGKEVLANLI 188 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +SAR P+V +NCAAL ESLLESELFGHEKGAFTGA +R+GRF A G++FLDEI Sbjct: 189 HVNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEI 248 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G+++ Q +LLR +QERE +RVG + VDVR+IAAT+RDL A+V AG FR+DLYYRL Sbjct: 249 GEMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRL 308 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ + +P+LRQR DIPLLA FL ++ + +AM+ L +YDWPGN+R+LE Sbjct: 309 NVITLHLPALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMERLNNYDWPGNVRQLE 368 Query: 363 NAVERAVVLLTGEYISERELPLAIAS 388 + +ERAV+L G I+ + L +S Sbjct: 369 HEIERAVILSRGNVITSEHMSLVPSS 394 >UniRef50_A6C862 Nitrogen regulation protein NR(I) n=2 Tax=Planctomycetaceae RepID=A6C862_9PLAN Length = 470 Score = 334 bits (856), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 192/462 (41%), Positives = 271/462 (58%), Gaps = 29/462 (6%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+VDD+ S C L L G+ V +A+S QAL E+ D+V+ DVR+ +DG+ Sbjct: 4 LLIVDDEESICWGLSQLGESLGHQVRMASSAEQALTFAEEERPDVVVMDVRLPGIDGLTA 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 ++ + +PV+++TAY ++TAVEA++ GA DY++KP D + ++ LEKA+ + Sbjct: 64 MQGLYDRIGTVPVIVITAYGDLQTAVEAVRKGAFDYIVKPFDLNQMERVLEKAIDESQR- 122 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 D P G+VG +P MQ++ IALVA SEA+VL+ G+SGTGKEL A+AIH S Sbjct: 123 DVLMPGEPKQVEGLVGSTPEMQNVFKSIALVAGSEASVLLSGESGTGKELAAQAIHRFSD 182 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 RSE P V +N A+L+E L ESELFGH +GAFT AD R G +AD GTLFLDE+ DI Sbjct: 183 RSEGPFVAVNIASLSEGLAESELFGHAQGAFTSADSARVGFLEQADQGTLFLDEVADIPL 242 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 +Q++LLRA++E EV VGSNQ + R+IAATHR+L + + G+FR DLY+RL I Sbjct: 243 AIQIKLLRALEEGEVLPVGSNQRVKTSFRVIAATHRNLESLIKQGKFRHDLYFRLCTFQI 302 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 ++P LR+R DI +LA FL+RF +R T + + L W GN+REL NA+E Sbjct: 303 DIPPLRKRVTDIRVLAEFFLERFVDRQTGMQHRLTAETVAELERRPWYGNVRELRNAIEH 362 Query: 368 AVVLLTGEYISERELPLAIASTPI-----PLGQSQDIQPLVE------------------ 404 A + G I +LP A++ + + P G +I L++ Sbjct: 363 AALRARGGTILPEDLPAAVSQSFLGMGEAPAGSEAEISMLLKQWAEAQLTDPEQAANVYE 422 Query: 405 -----VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +E V+ ALEK G AAR LG+ R TL KL + Sbjct: 423 QLLALIEPPVMEVALEKFHGQCAPAARCLGLHRTTLSKKLKQ 464 >UniRef50_A9GME2 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GME2_SORC5 Length = 457 Score = 333 bits (855), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 190/438 (43%), Positives = 273/438 (62%), Gaps = 11/438 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD++ ++ + R G+ + AL + E+ FDL++ DVRM E+DGI Sbjct: 7 VLVVDDELEMAKLVADIARDMGHEPTALTAPLLALPLLEEREFDLIVTDVRMPEIDGIEL 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 ++ I +P ++ MTA+ S++TAV A++ GA DYL KP +L +E+AL ++ Sbjct: 67 IERIARFDPRTAIIAMTAFGSIDTAVRAMRAGAFDYLPKPFQPADLALRMERALGQ-RAM 125 Query: 128 DAETPAV---TASQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 E A+ A +F GM+G+S A++ +++ + VA S ATVL+ G SG+GKE+VARA Sbjct: 126 RVELTALRSEVAHRFSISGMIGRSRAIEEVIALVRRVADSPATVLVSGPSGSGKEIVARA 185 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S R + V +NCAA+ E L+E+ELFG KGA+T A R G F EADGGTLFLDE Sbjct: 186 LHGESRRRGRKFVAVNCAAIPEGLIEAELFGVRKGAYTDARSDRPGMFQEADGGTLFLDE 245 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 + +++P +Q +LLRA+QEREV+ VGS +DVR++AAT+ DL A V FR+DL+YR Sbjct: 246 VSELAPPLQAKLLRALQEREVRPVGSVTSEPIDVRVVAATNCDLRAAVAERAFREDLFYR 305 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L V+ I +P L+ R +DI LA HFL R A K + GF+ A+ L+ YDWPGN+REL Sbjct: 306 LAVLEIAIPPLKHRTDDILPLAEHFLARAATNAGKPIAGFSGAAVKRLLAYDWPGNVREL 365 Query: 362 ENAVERAVVLLTGEYISERELPLAIAS---TPIPLGQSQDIQ-PLVEVEKEVILAALEKT 417 ENA+ERA L G IS +LP + + P L + D + L E+++E L + Sbjct: 366 ENAIERAAALCDGGRISPDDLPEGVRARRGAPDFLEAAADRRMTLEELQREYAQIVLRRA 425 Query: 418 GGNKTEAARQLGITRKTL 435 GG K AA LG+ R+TL Sbjct: 426 GGKKQRAAALLGVDRRTL 443 >UniRef50_C0QK65 Two-component sensory box histidine kinase/response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QK65_DESAH Length = 445 Score = 333 bits (854), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 193/445 (43%), Positives = 272/445 (61%), Gaps = 15/445 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ +L ++ + V A G +ALE V +D+V+ D++M +DG Sbjct: 4 ILIVDDEEKIRYLLSIMIGRRAHLVDQAKDGAEALEMVSSTPYDMVITDMKMPRLDGTGL 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK+I L+ PV+ +TA+++VE+AVEA++ GA DYL KP + +++ T+E+ L + I Sbjct: 64 LKQIMLLDIPCPVVFITAFATVESAVEAMRMGAADYLTKPFEEESVLLTVERTLKLSR-I 122 Query: 128 DAETPAVT------ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 AE + A M+ +S M ++ A V S++ +LI G+SGTGKEL+A+ Sbjct: 123 MAENRDLKKQLDNGACASKMIFESKVMSDIIDLAAKVGKSDSAILISGESGTGKELLAKY 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S RS K V LNCAA++ +L+ESELFG+EKGAFTGA+KR G+F A GGTLFLDE Sbjct: 183 IHGQSLRSHKRFVPLNCAAISPNLVESELFGYEKGAFTGANKRSIGKFEYASGGTLFLDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ Q +LLRA+QE+++QRVG N I VDVR++ ATH+DL V RFR+DLYYR Sbjct: 243 IGDLPLDAQAKLLRALQEKKIQRVGGNAEIPVDVRIVCATHQDLDGLVEKNRFRRDLYYR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 +NV + P LR+R+EDIP LA HFL+ N + T A LL Y WPGN+REL Sbjct: 303 INVFPLSPPPLRERKEDIPALAVHFLKESFNGNDVVL---TDGAKRLLAQYPWPGNVREL 359 Query: 362 ENAVERAVVLLTGEYISERELP-LAIASTPIPLGQSQDIQP----LVEVEKEVILAALEK 416 NA+ERAV+L I+ + L L A P + P L +E +++ AL+ Sbjct: 360 ANAIERAVILEENNAITAQTLSFLKKAHGPGENEGDYKLPPDGVCLQTLETDIVRQALDM 419 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 G N+T AA+ LG+TR + R Sbjct: 420 AGQNQTVAAKMLGLTRAKFRVLMKR 444 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 332 bits (852), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 181/448 (40%), Positives = 275/448 (61%), Gaps = 21/448 (4%) Query: 8 ILVVDDDISHCTILQALLRG-WGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDD+ ++L +L + + + Q E +++ +DLV+ D+RM DG+ Sbjct: 5 ILMVDDEQDMLSLLSRILSDRTDHEITSVDDPLQVTELLKKNDYDLVITDLRMPGRDGLG 64 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 ++ +K NP V+IMTAY ++E+A+EA + GA DY+ KP + + +++AL Sbjct: 65 VMEAVKQKNPNTAVIIMTAYGTIESAIEATRKGAFDYVTKPFRKERILHVVDQALKW-QQ 123 Query: 127 IDAETPAVT-----ASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E + SQF ++G S AM+ L ++I VA + ATVLI G+SGTGKELVAR Sbjct: 124 LQKENTYLRERLEGKSQFASLIGSSRAMRTLHNQIDRVAKTSATVLITGESGTGKELVAR 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 +H S R ++ + LNC+ L ES++ESELFGH +G+FTGA + ++G EA+ GTLFLD Sbjct: 184 ELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLIEEANHGTLFLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+S MQV+LLR +QE E + +GSN I VD+R IAAT+++L ++ G FR+DL+Y Sbjct: 244 EIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRGEFREDLFY 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ I VP LR+R +DIPLL FL+++ + K +K +P ++ L+ DWPGN+RE Sbjct: 304 RLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNALMQRDWPGNVRE 363 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTP---IPLGQSQDIQPLV----------EVEK 407 LEN +ER V++ +G + ++ L P PL DI + E + Sbjct: 364 LENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMPFKEAKDKLIEEFQS 423 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTL 435 + I AL + GN ++AAR+ G+ R+ L Sbjct: 424 QYISKALARHSGNVSQAARESGLKRQYL 451 >UniRef50_D2QH48 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=D2QH48_9SPHI Length = 490 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 187/480 (38%), Positives = 278/480 (57%), Gaps = 48/480 (10%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL++DD+ C +L+ L GY A G L +R++ F+LV+CD ++ ++DG+ Sbjct: 4 ILIIDDNNDICLLLERFLTKQGYKTASVQRGDDGLVLLRKESFELVICDFKLPDIDGLEM 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL------ 121 L+ IK ++P V+I+T YS V AV+ +K GA DY+ KPL D + T++ AL Sbjct: 64 LRRIKVMHPTTAVIIITGYSDVRVAVQTVKHGAYDYVTKPLYPDEILYTIKGALERRGQS 123 Query: 122 --------------AHTHSIDAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEAT 164 + ++ A + + + G + GKS A + L I L+AP++ + Sbjct: 124 LSQAKAVTPAAAPAVKSSTVKAASGKSSLTPDGKRFIFGKSRAAEQLQKHIDLIAPTDMS 183 Query: 165 VLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKR 224 V+I G++GTGKE VA AIH S R++KP V ++C AL + L SELFGH KG+FTGA Sbjct: 184 VIITGETGTGKEFVANAIHLKSKRADKPFVAIDCGALGKELAGSELFGHVKGSFTGAMSD 243 Query: 225 REGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRD 284 + G F A+GGT+FLDEIG++S Q++LLR +QER+++R+GSNQ I VDVR+I AT+ D Sbjct: 244 KAGSFEYANGGTIFLDEIGNLSYDNQIKLLRVLQERKIRRIGSNQDIPVDVRIIVATNED 303 Query: 285 LAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQ 344 L V G+FR+D+Y+R+ + + LR+R+ D+ + A HFL+ ++ K + GF + Sbjct: 304 LREAVRQGKFREDIYHRIAEFEMHLSPLRERKADVMIFAEHFLESANQQLEKDILGFEEE 363 Query: 345 AMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIAS---------------- 388 A + L Y W GN+REL+N V+RAV+L G+YI LP I S Sbjct: 364 AKEKLKEYYWHGNLRELQNVVKRAVLLTQGDYIEADVLPQEIISPQYLTAEDTGTSSIQI 423 Query: 389 --------TPIPLGQSQDIQPLVE-VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 P+ + +++ + E E+ IL LEKTG NKT+AA L I RKTL KL Sbjct: 424 NYDPARPGVPVFSQSAANLKSVSENAERAAILKVLEKTGYNKTKAAEVLNIDRKTLYNKL 483 >UniRef50_Q1Q480 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q480_9BACT Length = 457 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 182/446 (40%), Positives = 280/446 (62%), Gaps = 22/446 (4%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA-EM 62 D +L+V+D+ + IL LR G V +SG +A E +++Q F +++ D+R++ + Sbjct: 2 DKARVLIVEDEDIYRKILCNTLREHGIEVQATDSGEEAWELIKQQRFPVIISDIRLSGNI 61 Query: 63 DGIATLKEIKAL-NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 G+ L++ K L +P+I L++TA+ +E AVEA++ GA Y+ KP + +++ A L++ + Sbjct: 62 SGMDLLRDAKELYDPSI--LMITAFGEIEMAVEAMRLGAFSYITKPFEVEDILANLDRMM 119 Query: 122 AHTHSI-DAETPAVT---ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 SI D P+ + + G++G S M L++ A S+AT+LI G+SGTGKEL Sbjct: 120 LQQRSISDHLLPSNVEELSQRTGIIGNSKKMCDLVNIALKAARSDATILITGESGTGKEL 179 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 +A+AI+ +S+R K V +NCA L + LES LFGH KG++TGA K + G F +ADGGTL Sbjct: 180 IAKAIYMNSSRKNKEFVAINCATLTDEFLESALFGHVKGSYTGAMKDKIGLFEKADGGTL 239 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 F+DE+GD S +Q ++LR +QE E +GS +VR+IAAT++DL V FR+D Sbjct: 240 FMDEVGDTSKSIQAKILRVLQEGEFIPLGSTDTKKANVRIIAATNKDLLQSVEKNEFRED 299 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRLNV+ I +P LR+R+ DIPLL HF+++ + K V P+ ++L+ YDWPGN Sbjct: 300 LYYRLNVINIAMPPLRERKSDIPLLINHFIKKNNVKLNKKVIRIAPEIEEILMDYDWPGN 359 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV--------EVEKEV 409 +RELEN +ER +VL +G ++++ LP + L Q DI P+ E EKE+ Sbjct: 360 VRELENVIERTMVLCSGNKLAKKHLPGCV------LPQKGDIPPITIAPGTSWKEAEKEL 413 Query: 410 ILAALEKTGGNKTEAARQLGITRKTL 435 I+ L+ T GNK EAA+ LGI+ + + Sbjct: 414 IMKTLQLTRGNKQEAAKMLGISLRKI 439 >UniRef50_Q1DD46 Sigma-54 dependent DNA-binding reponse regulator Nla28 n=3 Tax=Cystobacterineae RepID=Q1DD46_MYXXD Length = 447 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 195/434 (44%), Positives = 264/434 (60%), Gaps = 9/434 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM-DGIA 66 ILVVDDD +LQ LL G V A R+A E++ E FDLVL D+ M E DG+ Sbjct: 6 ILVVDDDPQARDLLQRLLGPLGA-VTQAPDPRRATERIAEGAFDLVLTDMAMPEPGDGLK 64 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L E+KA P PV+++TA+ ++E A+++++ GA DYL KP D D + +AL Sbjct: 65 VLHEVKAQLPDTPVVVVTAFGNIEGALDSIQQGAFDYLAKPFDVDAILRVARRALEQKRL 124 Query: 127 IDAETP---AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 ++ V +VG+SPA+ + +A A S VLI G++GTGKE+VARA+H Sbjct: 125 VEENRSLRQQVERGSLMLVGRSPALLEVYKHVARAAASNVPVLITGETGTGKEMVARALH 184 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S R P + ++C A+ ESL+ESELFGH KG+FTGA R G F EA GGTLFLDEIG Sbjct: 185 KRSPRMNGPFIPVDCGAITESLMESELFGHAKGSFTGASGARRGVFEEASGGTLFLDEIG 244 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+ +Q +LLR +QE E++RVG + + VDVR++AAT++DL V G FR+DL YRL+ Sbjct: 245 DVGMKVQSQLLRVLQEGEIRRVGESVPVKVDVRVVAATNKDLKTRVAEGLFREDLLYRLD 304 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV + +P LR+R EDIP L HF R A + V T +A L YDWPGN+R+LEN Sbjct: 305 VVHLHLPPLRERSEDIPALVEHFAGRHARGGVRPV--VTSEANARLAAYDWPGNVRQLEN 362 Query: 364 AVERAVVLLTGEYISERELPLAI--ASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNK 421 V RA+ L + ++ P I ASTP G + D+ L E+ + L+ GGNK Sbjct: 363 VVARALALNVTGVLGPQDFPEPIGDASTPKMAGLAGDMPSLAELSRRYAAQVLQHVGGNK 422 Query: 422 TEAARQLGITRKTL 435 +EAAR L + RKTL Sbjct: 423 SEAARLLDVDRKTL 436 >UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Alphaproteobacteria RepID=C6XRL0_HIRBI Length = 498 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 180/472 (38%), Positives = 282/472 (59%), Gaps = 41/472 (8%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMDGI 65 +L+VDDD + ++QA + G+ L SG ALE+ + +VL D+ M + G+ Sbjct: 10 VLIVDDDPTQRRLMQAAVERQGFRARLVESGDLALEEASDAKNGISVVLLDLIMPGLSGM 69 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 TL+ + P +PV+++TA ++T V+A++ GA+D+ +KP + + +L AL Sbjct: 70 ETLERLLERRPDLPVIVLTASGGIDTVVQAMRAGAVDFFVKPASPERIVVSLRNAL-KVS 128 Query: 126 SIDAETPAVTASQFG------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + E ++ G M+ +P M+ ++ A S +LI G+SG GKE+ + Sbjct: 129 DLRGEVKRLSKKSEGTLGFDDMIAGAPLMRQVVRLGQRAAKSNIPILITGESGVGKEVAS 188 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 + I ++S R+ KP +T+NC A+ E+L+ES LFGHEKGAFTGA +++ G+F EADGGTLFL Sbjct: 189 QCIQSASERAGKPFITVNCGAIPENLVESILFGHEKGAFTGAHEKKLGKFAEADGGTLFL 248 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DE+G++ MQV+LLR +QE EV VGS + VDVR+I+AT+RDLA V+ GRFR+DLY Sbjct: 249 DEVGELPLDMQVKLLRVLQEGEVDAVGSRKPTKVDVRIISATNRDLAQAVSEGRFREDLY 308 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNV IE+PSLR R+ED+P L HF++RF + ++ G + + M ++ +DWPGN+R Sbjct: 309 YRLNVFPIEMPSLRDRKEDLPALVDHFIRRFNAQEGMSITGASLETMGMIAAHDWPGNVR 368 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTP-------------------------IPLG 394 +LEN++ RA++L G+ + + P TP PLG Sbjct: 369 QLENSIFRAMILSEGDELQPVDFPHISGLTPNYEILKTPNNGASISDAATTATQLNSPLG 428 Query: 395 -------QSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 + +++PL VE+++I A++ G+ ++ AR+LGI R TL K+ Sbjct: 429 GPVSIVDDNGELRPLESVERDLIQYAIDLYSGHMSQVARRLGIGRSTLYRKV 480 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 332 bits (850), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 186/458 (40%), Positives = 272/458 (59%), Gaps = 33/458 (7%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 ++ ILV DDD + IL+ L +AN G QAL+ + E DLV+ D +M +DG Sbjct: 4 DLTILVADDDRTTTAILKNTLEKQSLTPVVANDGIQALKILEETPVDLVIADYQMPGLDG 63 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 L+ +K IP +++TA+ SV+ + A++ GA++YL+KP+D ++ +EK L Sbjct: 64 FELLQAMKDRGMDIPFVMVTAHGSVDMTMNAMRLGAIEYLVKPVDPLDIVVLVEKTL--- 120 Query: 125 HSIDAETPAVTASQ---------FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 +I+ ++ Q +VG+SP MQ L I + S A VLI G+SGTGK Sbjct: 121 -NINRMKSRLSRLQKEVEKKYHFTNIVGQSPQMQILFESIHKASKSTANVLITGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL A+A+H + E P V +NC+A + LESELFGH KGAFT A + GRF A+ G Sbjct: 180 ELAAKAVHYNGPLKEGPFVAVNCSAFSSGTLESELFGHVKGAFTDAHRDHMGRFELANKG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDE+GDI +QV+LLR +Q++ +RVG+ + I D RL+AAT+RDL V G+FR Sbjct: 240 TLFLDEVGDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLKDLVRKGKFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV+ + P+LR+ EDIPLL HFL+R+ + +++K + AM ++ Y WP Sbjct: 300 EDLFYRLNVIGMTTPALREHPEDIPLLISHFLKRYGQVGGRSIKTLSMHAMKIMQEYRWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE----------- 404 GN+R+LENA+E A + G I +LPL I + QS+D PL E Sbjct: 360 GNVRQLENAIESAAAMCDGSMIRTADLPLEITAP-----QSED--PLREDAYRGTLPEVV 412 Query: 405 --VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +EK +IL ALE+ K AAR LG++ + + K++ Sbjct: 413 ERIEKHMILRALEQNQWVKAHAARTLGVSERVVSYKMA 450 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 332 bits (850), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 190/461 (41%), Positives = 269/461 (58%), Gaps = 28/461 (6%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ++ VVDDD S +L+ + G L+ + + D++L D+RM +MDG++ Sbjct: 5 NVWVVDDDSSIRWVLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDMDGLS 64 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK IK P +PV+IMTA+S ++ AV A + GA DYL KP D D A +E+A+ H Sbjct: 65 LLKIIKEQYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAITHYRE 124 Query: 127 IDAETPA--VTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 A + S M+G++PAMQ + I ++ S +VLI+G+SGTGKELVA A+H Sbjct: 125 QKQPNNAENILQSVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELVAHALHR 184 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 S R+ P + LN AA+ + L+ESELFGHEKGAFTGA + R+GRF +A+GG+LFLDEIGD Sbjct: 185 HSPRALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQANGGSLFLDEIGD 244 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + +Q RLLR + E + RVG + VDVR+IAATH+DL VN G FR+DLY+RLNV Sbjct: 245 MPLDIQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVNEGDFREDLYHRLNV 304 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 + I++P LR R EDIP LA +FLQ+ A+ K Q++ ++ Y W GN+R+LEN Sbjct: 305 IRIQLPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLKTMMEYVWSGNVRQLENV 364 Query: 365 VERAVVLLTGEYISERELPLAI-------------------------ASTPIPLGQSQDI 399 V+ + I ++LP I A + G+ + Sbjct: 365 CRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSLWADEALGEGKENIL 424 Query: 400 Q-PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 L + E+ ++L+AL T G+K +AAR LG R TL KL Sbjct: 425 NDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKL 465 >UniRef50_B8IB91 Two component, sigma54 specific, transcriptional regulator, Fis family n=19 Tax=Proteobacteria RepID=B8IB91_METNO Length = 466 Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 202/442 (45%), Positives = 274/442 (61%), Gaps = 10/442 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV-FDLVLCDVRM-AEMDGI 65 +L+VDD+ + L + G+ LA SGR+AL ++ VL D+RM ++DGI Sbjct: 4 VLIVDDEPALREGLAETIADLGHEPVLAASGREALARLAANPDIAAVLLDLRMPGDLDGI 63 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA-HT 124 A LK I+ A P +++TAY+S E +EA++ GA D+L KP+ + L+A L + L+ Sbjct: 64 AVLKRIRDRPRAPPAVVLTAYASAENTIEAMRLGAFDHLTKPVGREELRALLGRMLSLRA 123 Query: 125 HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 A A++ +VG S AM+ + I L A S+ATVL+ G++GTGKE+VARA+H Sbjct: 124 PGEAAPAAPAAAAETCLVGSSEAMRRVQKAIGLAADSDATVLLQGETGTGKEVVARALHD 183 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 R P V +NCAA+ LLESELFGH KGAFTGA R G F EA GGTLFLDEIGD Sbjct: 184 HGRRWSAPFVPVNCAAIPAELLESELFGHVKGAFTGAAADRPGAFREAQGGTLFLDEIGD 243 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + P MQ ++LRAIQ++ V VG ++V++R++AATHRDL A V +G FRQDLYYRLNV Sbjct: 244 MPPAMQAKILRAIQDKVVTPVGGRP-VAVEMRVVAATHRDLPALVASGGFRQDLYYRLNV 302 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 + I +P LR+R DI LA HFL + TPQA L+ YDWPGN+REL N Sbjct: 303 IPIVLPPLRERLADILPLAEHFLA-LGAGGGGVPRRLTPQAAARLLRYDWPGNVRELRNI 361 Query: 365 VERAVVLLTGEYISERELPLA---IASTPIPLGQ-SQDIQPLV-EVEKEVILAALEKTGG 419 +ERA VL+ GE I +L L P P S D+ V +EK +I AL+++ G Sbjct: 362 IERAAVLVRGEVIDAADLDLPGFDRPGGPAPEDWLSGDLPTAVARLEKAMIARALQESSG 421 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 N+ +AA++LGI R+ L AK+ R Sbjct: 422 NRAQAAKRLGIQRQLLYAKIER 443 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 193/470 (41%), Positives = 274/470 (58%), Gaps = 45/470 (9%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MTH ILV DD+ L ++ R GY V++A S +AL DL L DV + Sbjct: 1 MTH----ILVADDEAGIRETLSSIFRDEGYRVSVAASLDEALRIGEVDPPDLALVDVWLG 56 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 E DG++ L+EI L V++M+ + +++TAV+ALK+GA DY+ KP D + A Sbjct: 57 EDDGLSYLQEIARLPDPPAVVVMSGHGTIDTAVKALKSGAADYIEKPFSLDRVLTVAANA 116 Query: 121 LAHTHSIDAETPAV---TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 L ++ E A+ ++++ MVG SPA++ L +A VAP+E VLI G++GTGKEL Sbjct: 117 L-KLRGLERENRALREKVSARYEMVGDSPAIEALRELVARVAPTEGWVLITGENGTGKEL 175 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VAR++H S R P V +NCAA+ E+L+ESELFGHEKGAFTGA RR G+F +A GG L Sbjct: 176 VARSLHEGSVRRSGPFVDVNCAAIPETLIESELFGHEKGAFTGALSRRPGKFEQASGGVL 235 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGD++ Q R+LR +QER++ R+G + I VDVR++AAT+RDL + FR+D Sbjct: 236 FLDEIGDMALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAATNRDLPGMIARKEFRED 295 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRLNVV+I VP LR+R DIP+L HF++ K F+ +A++ L WPGN Sbjct: 296 LFYRLNVVSIRVPPLRERLSDIPILVEHFVEILCRDFGHRPKLFSREALEALCERTWPGN 355 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTP--------------------------- 390 +REL+N VER ++L G I R+L AI T Sbjct: 356 VRELKNTVERLLILAPGPVIEVRDLEPAIPGTTDRGAEASRGETGEGRGGSPPDPGPGAS 415 Query: 391 -----IPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTL 435 +PL +++D E+ +L L + GN AA++LG+ R +L Sbjct: 416 GMEPDLPLREARD-----RFERGYVLGVLARCEGNIARAAQRLGMDRTSL 460 >UniRef50_D2EVL6 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=D2EVL6_9BACE Length = 476 Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 185/473 (39%), Positives = 281/473 (59%), Gaps = 49/473 (10%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+DDI++ +L+ L G+ V A++ +A + + + DL+L D+R+ + DGI Sbjct: 4 ILIVEDDITYGMMLKTWLGKKGFQVTSASNIARAQKHIESETVDLILSDLRLPDKDGIDL 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNL-----------QAT 116 LK + IP++IMT Y+ +++AV+ +K GA DY+ KP++ D L + Sbjct: 64 LKWLGEHGLQIPLIIMTGYADIQSAVQTMKLGACDYIAKPVNPDELLKKIGEALNASSSA 123 Query: 117 LEKALAHTHSIDAETP--------------------------AVTASQFGMVGKSPAMQH 150 L++ + + + DA TP ++ +S F + G+S A + Sbjct: 124 LKQMMHSSRTDDAFTPNRPSVSPKQTMHSDKMKNQPLKGAEGSLFSSDF-LEGESDAAKQ 182 Query: 151 LLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESEL 210 L + + LV+P+ +VLI+G SGTGKE VA IH S R+++P V ++C ++ + L SE Sbjct: 183 LYNYVKLVSPTNMSVLINGASGTGKEYVAHRIHQLSKRADQPFVAIDCGSIPKELAASEF 242 Query: 211 FGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQI 270 FGH KGAFTGA + G FVEA+GGT+FLDEIG++S +Q++LLRA+QER+++ VGSN+ Sbjct: 243 FGHIKGAFTGALTDKTGAFVEANGGTIFLDEIGNLSYEVQIQLLRALQERKIRPVGSNKE 302 Query: 271 ISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRF 330 ISVD+RL++AT+ +L + G FR+DLY+R+N + +P L+ RREDI L A FL + Sbjct: 303 ISVDIRLVSATNENLEQAIEKGAFREDLYHRINEFTLRMPQLKDRREDILLFANFFLDQA 362 Query: 331 AERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTP 390 K + GF +A L+ Y WPGN+R+++N V RA +L G++I+ EL P Sbjct: 363 NREMDKQLTGFDDKASRALLEYPWPGNLRQMKNMVRRATLLAQGKFITINELNELKEPAP 422 Query: 391 ----IPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 IPL E EK I+ AL +TG NK+ AA+ LGI RKTL KL Sbjct: 423 AIIGIPLRNE-------EAEKHQIIEALRQTGNNKSRAAQLLGIDRKTLYNKL 468 >UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=D2L4Q3_9DELT Length = 453 Score = 331 bits (848), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 192/440 (43%), Positives = 269/440 (61%), Gaps = 15/440 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL VDDD +L+ L GY+V A G +ALE + ++ LV+ D+RM MDG+ Sbjct: 11 ILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVKLVISDIRMPGMDGMRL 70 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+E++ +P++ +TA+ S+ AVEA+K GA+DYL KP D L + + A Sbjct: 71 LEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEVFARAAGN 130 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 DA T + G+VG+S AM+ L + I VAP + VL+ G+SGTGKELVA IH S Sbjct: 131 DA-TRERDLGESGLVGQSEAMRDLAAMIERVAPRDVNVLVLGESGTGKELVANLIHRRSP 189 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 R PLVT++C + LLESELFGH KG+FT A K ++G +A+ GTLFLDEIG+IS Sbjct: 190 RKNGPLVTVDCGSTPAGLLESELFGHVKGSFTHAVKDKKGLIEQANQGTLFLDEIGNIST 249 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 MQ+RLLR ++ ++R+G + I VD R+IAAT+ D+ +V G FR+DL YRL VV I Sbjct: 250 EMQIRLLRFLENHRIRRIGDVREIQVDCRVIAATNADIFEQVAEGVFREDLLYRLKVVTI 309 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTP-----QAMDLLIHYDWPGNIRELE 362 VP LR+RREDIP+LA HF ++F A +G P + M L+ Y WPGN+R+L Sbjct: 310 NVPPLRERREDIPILAEHFTRQFC-----AAQGMPPVTVPAETMAYLMAYPWPGNVRQLR 364 Query: 363 NAVERAVVLLTGEYISERELPLAIAST-PIPLGQSQDIQPLVEVEKEVILAALEKTGGNK 421 NA+E VVL TG ++ ++L L +A P G+S + E EK I+ ALE+ + Sbjct: 365 NALEAGVVLCTGGVLAPKDLQLPLAGKGPDRAGESLSLD---ESEKTAIVRALEQANWVQ 421 Query: 422 TEAARQLGITRKTLLAKLSR 441 AA LG++R+ L K+ + Sbjct: 422 KAAAPLLGVSRRALNYKIQK 441 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 330 bits (847), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 180/450 (40%), Positives = 282/450 (62%), Gaps = 23/450 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L++DD+ IL +L GYNV A+S +A + + E + +++L D+++ +GI Sbjct: 4 LLIIDDEPLQREILLTILSEEGYNVYTASSLEEASKIINEILPEIILTDLKLGNQNGIEI 63 Query: 68 LKEI--KALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L + + PA V+++TA+ ++ +AV A+K GA DYL KPLD + L T+ KA + Sbjct: 64 LNSLPEEPFRPA--VIVITAFGTISSAVNAIKQGAFDYLTKPLDKEVLLVTIRKAEERMN 121 Query: 126 SIDAETPAVTASQF------GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 I E + + G++GKS M +L + P+ ATVLI+G+SGTGKEL+A Sbjct: 122 LI-KENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH +S R +KP + +NCAA+ ++L+ESELFG+E GAFTGA+ R+ G AD GTLFL Sbjct: 181 RAIHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEI +I Q +LLR +Q++EV+++GS VDVR+IAAT+++L+ +V +FR+DLY Sbjct: 241 DEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLY 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL V+ +E+P LR+R+EDIP L F++++++ K V G +A++ L++Y WPGNIR Sbjct: 301 YRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPGNIR 360 Query: 360 ELENAVERAVVLLTGEYISEREL--------PLAIASTPIPLGQSQDIQPLVEVEKEVIL 411 ELE+ +ERA+++ + I+ ++ P + IP + I E+EKE+I Sbjct: 361 ELESVIERAIIICEKDKITFNDIQDELRVITPKNLFDIDIP---DEGIN-YEELEKELIK 416 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL K+ +AAR LG++ T +L + Sbjct: 417 KALIKSNFVIAKAARLLGMSYDTFWYRLKK 446 >UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=B4ULA9_ANASK Length = 459 Score = 330 bits (846), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 189/443 (42%), Positives = 276/443 (62%), Gaps = 11/443 (2%) Query: 8 ILVVDD-DISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ++V+DD D + + + L R Y+V S A+ V FD ++ D+RM +DGI Sbjct: 9 LMVIDDLDSARQMMKRTLARS--YDVYDFASVADAVPAVERADFDCIVTDLRMPGIDGIE 66 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH- 125 L+ +A P IPV+++TA+++VETAVEA+K GA DYL KP + + L+ + +A+ H Sbjct: 67 GLRRFQAKVPEIPVILVTAFATVETAVEAMKAGAFDYLKKPFEPEELELVVARAVEHARV 126 Query: 126 -SIDAETPAVTASQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 +A + A QF G+VGKS AM+ L+S + +APS+ +LI G+SGTGK+L+ARA Sbjct: 127 KKENARLRSALAGQFSVHGIVGKSQAMKDLVSMLERIAPSDVPILIEGESGTGKDLLARA 186 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 HA S+R++ P V LN +A+ E+L ESELFGHEKGAFTGAD+ R G F EA+GGTLFLDE Sbjct: 187 AHALSSRAQGPYVALNMSAIPENLAESELFGHEKGAFTGADQPRAGFFAEAEGGTLFLDE 246 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 +G + P +Q +LLR +Q+ E VGS + +VR++AAT+ DL V G+FR+DL++R Sbjct: 247 LGLLPPALQPKLLRVLQDGEFIPVGSRKPRKANVRVVAATNEDLQRRVKEGKFREDLWFR 306 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L VV + +P LR+RREDIPLL H +Q+ A R + +AM L+ + WPGNIREL Sbjct: 307 LRVVPLRLPPLRERREDIPLLVEHLVQKHALRLSRPPLQPDAEAMRALLDHPWPGNIREL 366 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD---IQPLVEVEKEVILAALEKTG 418 E+A+ER ++L G+ I+ +LP + G + + + E+ + L + G Sbjct: 367 EHAIERGLLLARGDAITLADLPPELTPPAEAAGGADEGRYRRARDAWERRFLEDVLREAG 426 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 G AA G+ R T KL+R Sbjct: 427 GQVARAAELSGLHRSTFYEKLAR 449 >UniRef50_A3HS27 RteB, two-component system response regulator n=2 Tax=Sphingobacteriales RepID=A3HS27_9SPHI Length = 475 Score = 330 bits (846), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 184/470 (39%), Positives = 272/470 (57%), Gaps = 37/470 (7%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILV+DD+I C +L+ L GY V SG+ LE V+E +DL+ CD ++ +M+G Sbjct: 4 ILVIDDNIDICQLLERFLTKKGYEVDTTISGKNGLEMVKETYYDLIFCDFKLRDMEGRDV 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA----- 122 L +++ ++P V I+T Y+ V+ AVE +K GA DY+ KPL D + + +E+ALA Sbjct: 64 LAKVRIISPGTKVAIITGYADVKIAVEVIKKGAFDYITKPLIPDEIISLIERALALKEEE 123 Query: 123 HTHSIDAETPAVTA----------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 S+ E A S+F + G + L E+ LVAP+ +V+I+G+SG Sbjct: 124 KVKSVTFEKADSKAKKKTSKAEADSKF-LKGTGKESKKLYKEVKLVAPTNLSVVIYGESG 182 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 GKE +AR IH S R+ KP + ++C AL + L SEL+GHEKG+FTGA + G+F A Sbjct: 183 AGKENIARLIHDQSERAGKPFIAVDCGALTKELAGSELWGHEKGSFTGAHTEKPGQFEIA 242 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 DGGT+FLDEI ++S +QV LLR +QER+++R+G + S+DVR+I A++ DL V Sbjct: 243 DGGTIFLDEISNLSYEVQVGLLRLVQERKLRRIGGTKDKSIDVRIIVASNEDLRKAVQEN 302 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 +FR+DLY+R N +I VP LR+R++DI A HFL+ E K V+GF + ++ Y Sbjct: 303 KFREDLYFRFNEFSITVPPLRERKDDIEAFALHFLELSNEELNKDVEGFDEEVKEVFQEY 362 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAI-----------ASTPIPLGQSQDIQP 401 WPGN+RE+ N + RA +L GE ++ LP + S+ Q+ Q Sbjct: 363 VWPGNLREMRNVIRRATLLTDGEKMTVSALPPEVVYARKFNFTDSTSSNTSDAQANGAQA 422 Query: 402 ----------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E E EV+ LE+ N+T+AA+QLGI RKTL K+ + Sbjct: 423 SKSPTNLKDAAAEAEAEVLRKVLEEVKYNRTKAAKQLGIDRKTLFNKMKQ 472 >UniRef50_Q47CW5 Helix-turn-helix, Fis-type n=3 Tax=Proteobacteria RepID=Q47CW5_DECAR Length = 468 Score = 330 bits (845), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 177/441 (40%), Positives = 270/441 (61%), Gaps = 13/441 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDDD++ C L++ + + V+LAN+ + D ++ D+R+ G+ Sbjct: 10 ILIVDDDLAICQTLKSHFQKNAFQVSLANTAEAGITIALSSNIDAIISDIRLPAKGGLDL 69 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+E+KAL P +P++++TA+ ++E V A++ GA+DY+ KP+D L A + +AL + Sbjct: 70 LREVKALKPELPIIMITAFHNMEMTVAAMQCGAMDYVPKPIDLPELDAAVNRALFASSRS 129 Query: 128 DAETP------AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 D T A S +VG+S AM+ + IALVA S T LI G+SGTGKELVARA Sbjct: 130 DHVTGEPLIIGATDVSPTQIVGQSFAMKEVYKSIALVAQSRVTALILGESGTGKELVARA 189 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +SA + P + +NCAAL +SLLESELFGHE+GAFTGA +G+ + GTLFLDE Sbjct: 190 IHNASAERDMPFIAVNCAALVDSLLESELFGHERGAFTGAVNAHKGKVEQVGEGTLFLDE 249 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 + +++P++Q +LLR ++ RE VGS Q+ R IAAT+ DL A V +G FR+DL+YR Sbjct: 250 VAELTPLIQGKLLRILEAREYSPVGSAQVKKSKARFIAATNVDLQARVASGEFREDLFYR 309 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV +I +P LR+R+ D+P L L++ RK ++ + +AM L + WPGN+R+L Sbjct: 310 LNVASINLPPLRERQGDMPRLIDFLLRKINRDLRKNIRRVSGEAMACLNAFAWPGNVRQL 369 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIP-------LGQSQDIQPLVEVEKEVILAAL 414 +N + +A V+ G+ ++ LP I + +P +D+ L E+EK I+ L Sbjct: 370 DNVLMKAAVMERGDTLTIDRLPPEIKCSRMPASALEIDTSMPKDLLSLRELEKNHIVRVL 429 Query: 415 EKTGGNKTEAARQLGITRKTL 435 ++TG +K +A L I+R L Sbjct: 430 QRTGWHKGQACEILDISRPKL 450 >UniRef50_Q6MI19 Probable transcriptional regulatory protein zraR n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MI19_BDEBA Length = 503 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 181/413 (43%), Positives = 268/413 (64%), Gaps = 10/413 (2%) Query: 9 LVVDDDIS-HCTILQALLRGWGYNVALANSGRQALEQVR--EQVFDLVLCDVRMAEMDGI 65 +VVDDD ++ AL + V A G A+E+V+ ++ +DLVL DV M M+G+ Sbjct: 1 MVVDDDQGLRLSVKSALAVTQRFEVDEAFDGVNAMEKVKNGDKKYDLVLLDVDMPRMNGL 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL-AHT 124 L++IK +P I V+IMTA+++ E+A++A+K GA +YL KP+ D+L A ++KA+ AH Sbjct: 61 EALRQIKEFDPGIIVIIMTAHATFESAIQAVKDGAYNYLQKPVAGDDLLALIDKAVNAHN 120 Query: 125 --HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 +I A P + ++G + MQ + + I +A E VLI G SGTGKELVA+AI Sbjct: 121 LISNIAASAPVMVEEGRKIIGHTSQMQKVFNIIHRLAKVETPVLIRGASGTGKELVAKAI 180 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +SAR ++ V +NC+A+ E+L ESELFGHEKG+FTGAD+R+ G+F A+GGTLFLDE+ Sbjct: 181 HFNSARKDEKFVAINCSAIPENLFESELFGHEKGSFTGADQRKIGKFQFAEGGTLFLDEV 240 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+ +MQV++LR +QE+ VGSN+ +VR+IAAT+R L + AG FR+DL+YRL Sbjct: 241 GDMPQLMQVKILRVLQEKLFTPVGSNREFPTNVRIIAATNRPLEDMIKAGTFREDLFYRL 300 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVV I +P+L +R++D+ + F+++F + + K + G P AM +L + WPGNIRELE Sbjct: 301 NVVPIFLPALAERKDDMEHMVNIFIRKFNQAHGKRINGIAPDAMAVLKKHSWPGNIRELE 360 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ-DIQPLVEVEKEVILAAL 414 N +E A VL I+ LP A+ I G + D+ P+ E + V A + Sbjct: 361 NVIEHAFVLEMSNIITIASLPEALL---IATGTNLIDVPPVQETAQNVASAGI 410 >UniRef50_A3HZT3 Putative two-component response regulator transcriptional regulatory protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HZT3_9SPHI Length = 467 Score = 329 bits (843), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 176/460 (38%), Positives = 277/460 (60%), Gaps = 26/460 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+++DD+++ I++ L GY+V + A + + + FDL++ D R+ + G+ Sbjct: 4 ILLIEDDLTYSRIVKTFLEKNGYSVETCTKVKDAQQILSSKSFDLIIADFRLPDGTGMEL 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ K+ P V+++T YS + A++A+K GA +Y+ KP++ D L AT++++L+ + Sbjct: 64 LQWSKSKFPQTQVILITHYSDIRIAIKAMKLGAFEYITKPINPDELLATVKESLSAKSTP 123 Query: 128 DAETPAVT----------ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 TP + A ++G S + L I LVAP++ +VL+ G++GTGKE Sbjct: 124 VEPTPISSPQPKSKDTKIAKGSYVIGSSNEAEKLEKHIQLVAPTDLSVLVLGETGTGKEF 183 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 V+R IH S R P V ++C AL + L SELFGH KGAFTGA + + G F A+GGT+ Sbjct: 184 VSRRIHDLSTRKNGPFVAIDCGALPKELAGSELFGHVKGAFTGALEHKTGHFESANGGTI 243 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG++S +Q++LLRAIQER ++++G N+ I +DVR+IAAT+ +L A G+FR+D Sbjct: 244 FLDEIGNLSYEVQIQLLRAIQERRIRKIGGNKEIQIDVRIIAATNDNLIANSGDGQFRED 303 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LY+RLN ++ LR+R+ED+ G FL+ ER K+VK +P+ D+ + YDWPGN Sbjct: 304 LYHRLNEFTLQAIPLRRRKEDMEDFTGQFLEESNERLNKSVKTLSPEVWDIFLAYDWPGN 363 Query: 358 IRELENAVERAVVLLTGEYISERELPLAI---------------ASTPIPLGQSQDIQP- 401 +REL N ++RAV+L G+ + + LP + S P L +D + Sbjct: 364 LRELRNIIKRAVLLTNGDQVEKDALPEGLYEPNSMSSASFSNSSISQPGELPSPKDYKTQ 423 Query: 402 LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +E EKE+I L T NK++ AR L + RKTL +K+ + Sbjct: 424 WIEQEKELIQKVLNDTKFNKSKTARILKMDRKTLYSKMEK 463 >UniRef50_D2MI41 Transcriptional regulatory protein ZraR n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI41_9BACT Length = 464 Score = 329 bits (843), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 187/455 (41%), Positives = 276/455 (60%), Gaps = 22/455 (4%) Query: 8 ILVVDDD-ISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 I V DDD + +I + L R G++V +SG LE++ V D++L D++M+ M GI Sbjct: 5 IFVTDDDEVVRASITRRLARS-GHDVRSFDSGEALLEELDHDVPDIILLDLKMSGMTGIE 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH- 125 TLK I+ P V+++TAY ++E AVEA++ GA D+LIK +D + +E+AL + Sbjct: 64 TLKHIRPKAPQTLVILLTAYGTIEDAVEAMRLGAYDFLIKSVDLSGVGPVVERALDYLTL 123 Query: 126 ----SIDAETPAVTASQFGMVGKSPAMQHLLSEIA-LVAPSEATVLIHGDSGTGKELVAR 180 S + + A + ++ SP M+ L+ ++ L ++ TVL+ G++GTGKE +AR Sbjct: 124 RRRVSFENQGSAGRYALKDLIADSPGMRELVVQVQELSENAKTTVLLQGETGTGKEFIAR 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 +H + R E P V +NC A+ + L ESELFG+E+GAFTGA +R+ G +A+GGTLFLD Sbjct: 184 VLHHNGPRGEAPFVGVNCTAIPQELFESELFGYERGAFTGAARRKPGLCEQAEGGTLFLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD++P MQ +LLR +QER +R+G I+VD RLIAAT+RDL EV+ G FR+DL++ Sbjct: 244 EIGDLNPSMQAKLLRVLQERSFKRLGGQDDITVDFRLIAATNRDLKKEVSQGTFREDLFF 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV++E+P LRQR EDI L+ L + K + P+A LL Y +PGNIRE Sbjct: 304 RLNVVSLELPPLRQRVEDIYPLSLRCLVHHSRDINKDIGEINPEARALLERYAYPGNIRE 363 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ--------------DIQPLVEVE 406 LEN VERAV+ G+ ++ +LP + P+ S Q L E E Sbjct: 364 LENIVERAVIFCRGKTLTPGDLPRELHEETKPVVSSTISTDEPVLKLEMVLGRQTLAETE 423 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +I ++ G NK+ AA++LG+TR L +L + Sbjct: 424 SAIIEEVMKLCGQNKSLAAQKLGLTRFALDRRLKK 458 >UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5H7_9DELT Length = 449 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 193/445 (43%), Positives = 274/445 (61%), Gaps = 16/445 (3%) Query: 8 ILVVDDD-ISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ I+ ++ L R G+ + A GR+AL + E+ FDLVL D+RM MDG+ Sbjct: 6 ILVVDDEAIARENLVHVLTRA-GHRASAAADGREALAALAEEPFDLVLTDLRMPGMDGLE 64 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L +K P + V+++T +++V+TAV A+ GA Y+ KP+ + + A KAL ++ Sbjct: 65 LLAGLKRRFPEVEVIVVTGHAAVDTAVAAMGLGAFTYVAKPVHVEEVLAQTAKAL-EKNA 123 Query: 127 IDAE--------TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + E PA S+ ++G+S M+ L I VA E VL+ G++GTGKELV Sbjct: 124 MRRELASLRRRADPASGLSR--LIGQSATMEALRESIVQVARLECNVLVTGETGTGKELV 181 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 AR IH SAR+ + +NC A +E L+ +ELFGHE+ AFTGA RR+G A GGTLF Sbjct: 182 ARTIHDLSARARGRFMAVNCGAFSEELISNELFGHEREAFTGAGARRKGLIEAAAGGTLF 241 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG++ MQV+LLR +QER RVG + +D R+++AT++DL E AG FRQDL Sbjct: 242 LDEIGELPLSMQVKLLRVLQERTFLRVGGTEEAPMDARVLSATNKDLKKEAEAGAFRQDL 301 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRL+V+ + VP L +RREDIPLLA HFL R A + V+ +P+ +D L+ Y++PGN+ Sbjct: 302 FYRLDVITLHVPPLSERREDIPLLARHFLARHASEAGRNVR-LSPEVLDSLLLYEYPGNV 360 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPI--PLGQSQDIQPLVEVEKEVILAALEK 416 RELEN V++A+ + G+ I R L + + G + L E EK I LE+ Sbjct: 361 RELENIVQKALAVCDGDVIESRHLLADLRDQRVRPTRGTRKSWPTLEEHEKAYIRDVLEE 420 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 GNK++AAR LGI R +L KL R Sbjct: 421 VEGNKSKAARVLGIDRVSLWRKLKR 445 >UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJU0_DESAA Length = 443 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 183/439 (41%), Positives = 276/439 (62%), Gaps = 13/439 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+ + L GY++ G A+E+++ ++L++ + + G++ Sbjct: 6 ILLVEHEYQDRLAWSDFLENRGYDIQAVGDGALAMERLKSNEYNLIIAN---DQAPGLSG 62 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 ++ ++ IPV+++++ +SV+ AVEA+K+GA D+L+KP+ L A + +AL + S Sbjct: 63 ADIVRKMDGKIPVILVSSNASVDQAVEAMKSGARDFLLKPVSAQILGAVVGRALGVSKS- 121 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 + A S ++ + M+ L + VA S+A VLI G+SGTGKEL AR IH SS+ Sbjct: 122 NGTPKAAGKSPVKIITQDDRMKRCLEVVDSVADSKAAVLISGESGTGKELFARQIHYSSS 181 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 R +K V +N AAL E+LLESELFGHEKGAFTGA R+ G+F A GGTL LDEI ++ Sbjct: 182 RKDKNFVAVNVAALPETLLESELFGHEKGAFTGAINRKIGKFELASGGTLLLDEITEMDI 241 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 +Q +LLR +QE EV RVG ++VDVR++A T+RD+ + G+FR DLYYRL V+ + Sbjct: 242 GLQAKLLRVLQESEVDRVGGTSPVNVDVRVVATTNRDVEQAIADGKFRSDLYYRLAVIPL 301 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 ++P LR+R D+ LLA HF++++ R+ K VKG T A + L++ DWPGN+RELEN +ER Sbjct: 302 KLPPLRERSSDVILLAEHFIRKYNARDGKNVKGLTKNAQNTLLNLDWPGNVRELENTIER 361 Query: 368 AVVLLTGEYISERELPLAIASTPIPLG-QSQDIQPLV-----EVEKEVILAALEKTGGNK 421 AV+L G+ I +L P P QD P V E+E+++I AL++T GN+ Sbjct: 362 AVLLCKGDQIDHNDL---FMEPPPPKALPRQDSIPSVSTTLREMEEQMIYQALDQTEGNR 418 Query: 422 TEAARQLGITRKTLLAKLS 440 T AA+ LGI+ +TL KL+ Sbjct: 419 THAAQILGISVRTLRNKLN 437 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 180/456 (39%), Positives = 278/456 (60%), Gaps = 21/456 (4%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 H N IL+VDD+ + ++ +L+ ++ A +G L+++ L+ D+ M ++ Sbjct: 8 HTN-SILIVDDEKAARYGMKKILQRDHGSIFEATNGIDVLQKIHTLQPALIFLDINMPQL 66 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ TL++I+ + V+I+TA+ S + AVEA+K GA DY+ KP + + L+ AL Sbjct: 67 DGLKTLEKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYDYIAKPYEMEELRIITRNALE 126 Query: 123 HTHSIDAETPAVTASQFGMV-------GKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 ++ E + + GM+ G+S MQ + I V ++ TVL+ G+SG+GK Sbjct: 127 KI-ALQEENTRLRM-EIGMLEGYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGESGSGK 184 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL A IH S R P + +NCAA+ E+L+ESELFGHE+G+FTGA +RR G+F A+ G Sbjct: 185 ELAAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATERRMGKFEMANNG 244 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+ LDEIGD+S Q +LLR +QE++ +R+G + ++VDVR+I+ATHRDL E+ GRFR Sbjct: 245 TILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEEGRFR 304 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYR+NVV I++P LR+R+EDIPLL F+Q F++++ K V + AM L Y+WP Sbjct: 305 EDLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVVSISNDAMKKLSAYNWP 364 Query: 356 GNIRELENAVERAVVL----------LTGEYISERELPLAIASTPIPLGQSQDIQPLVE- 404 GNIR+L+N +E A+VL L+ + I E + P + + L + + L+E Sbjct: 365 GNIRQLKNTIESAIVLTNNDVLDISDLSEDIIREEKTPDSTKNVHYHLSFREAKKILIEN 424 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 EK+ I LE+ GGN + A L + R+ L K+ Sbjct: 425 FEKDFISKKLEECGGNISHTAEALDMHRQNLQQKIK 460 >UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=46 Tax=Alphaproteobacteria RepID=A6UCY3_SINMW Length = 549 Score = 328 bits (841), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 198/493 (40%), Positives = 279/493 (56%), Gaps = 62/493 (12%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALE--QVREQVFDLVLCDVRMAEMDGI 65 ILV+DDD +L ++ G+ LA++GR LE Q + + +++L D+ M M+G Sbjct: 43 ILVIDDDPVQRRLLTNMIERLGHVAHLADNGRSGLELMQRKGGIINVILLDLLMPGMNGH 102 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 + L+ + PV++ T +ET V+A++ GA D+L+KP+ + L L AL Sbjct: 103 SFLEALAERGVDTPVIVQTGQGGIETVVQAMQAGAFDFLVKPVSPERLSIALGNALKMA- 161 Query: 126 SIDAETPAVTASQFGMVG------KSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 S D + + G VG SPAM ++ A S V++ G+SG GKE+VA Sbjct: 162 SRDGKVKTARRPRGGSVGFDDIVSASPAMIRVIDLARRAAQSNIPVVLEGESGVGKEMVA 221 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAI A+S R+ KP VT+NC A+ +L+ES LFGHEKGAFTGA ++ G+FV+ADGGTLFL Sbjct: 222 RAIQAASDRATKPFVTVNCGAIPGNLVESILFGHEKGAFTGASEKHSGKFVDADGGTLFL 281 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ +QV+LLRA+Q+ E++ VG+ Q V+VRLI+AT++DL EV GRFR+DLY Sbjct: 282 DEIGDLPLEVQVKLLRAVQQGEIETVGARQPQKVNVRLISATNKDLINEVREGRFREDLY 341 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVK-GFTPQAMDLLIHYDWPGNI 358 YRLNV I +P+LR+R+EDIP+L F++RFA R + + AM LL YDWPGNI Sbjct: 342 YRLNVFPITIPALRRRKEDIPVLVRAFVERFAAEQRLDQRLTVSNGAMALLTSYDWPGNI 401 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTP---------------IPLGQSQDIQP-- 401 R+LENA+ RAVVL G ++ R+ P P P G++ +P Sbjct: 402 RQLENAIFRAVVLAEGHELTVRDFPQVATQIPGYIVADRTGLSWGDGGPEGRTAPDRPAA 461 Query: 402 -----------------------------------LVEVEKEVILAALEKTGGNKTEAAR 426 L EVE+E+I AL+ G ++ AR Sbjct: 462 VTADAGALETAPTDQRDERIENAIASLSEGGEVRKLAEVEEELIRFALKFYRGQMSQVAR 521 Query: 427 QLGITRKTLLAKL 439 +LGI R TL KL Sbjct: 522 KLGIGRSTLYRKL 534 >UniRef50_A1WBW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=cellular organisms RepID=A1WBW7_ACISJ Length = 502 Score = 328 bits (841), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 201/488 (41%), Positives = 281/488 (57%), Gaps = 50/488 (10%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILVVDD+ T+ + L GY V A S A +Q++ Q FD+V+ D+R+ Sbjct: 1 MNASTASILVVDDEPDLRTLYELTLLREGYRVETAASVDDARQQLQTQKFDVVITDMRLP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ L ++++ ++MTAY S E AVEAL+ GA DYL KP+D +A + A Sbjct: 61 DGFGMDLLHDLRSQQRRERCVVMTAYGSAENAVEALRAGAFDYLTKPVDLKQFRAVVASA 120 Query: 121 LAHTHSIDAETPAVTASQFG-----------------MVGKSPAMQHLLSEIALVAPSEA 163 + I A A A++ G ++G S AM+++ IA VA S A Sbjct: 121 V---QGIGAVLAAPKATRPGARNVTQWPDMQDPVLDRLIGDSEAMRNVKQRIAKVARSMA 177 Query: 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADK 223 VL+ G+SGTGKELVARA+HASS RSE PL+ +NC A+ E+LLE+E FG KG++TG+ Sbjct: 178 PVLVRGESGTGKELVARALHASSQRSEGPLIAVNCGAIPENLLEAEFFGARKGSYTGSTH 237 Query: 224 RREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHR 283 REG F A GGTLFLDEIGD+ MQ +LLRAIQER V+ +GS Q +VDVR+++ATHR Sbjct: 238 DREGYFQAARGGTLFLDEIGDLPLPMQSKLLRAIQERNVRPLGSTQEEAVDVRIVSATHR 297 Query: 284 DLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTP 343 DLAA+V AGRFRQDLYYRLNV+ + +P LR+RRED+P L L R + + AV T Sbjct: 298 DLAADVQAGRFRQDLYYRLNVIELLIPPLRERREDLPALCEALLARIEQESGVAVPHLTE 357 Query: 344 QAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPL-----------------AI 386 +A+ + + GN+RELEN + RAV L G + P AI Sbjct: 358 EALQCIAQHPLTGNVRELENLLHRAVALSDGHELHVEGAPAPTVEAPPPLPQPVPSAPAI 417 Query: 387 ASTPIP------------LGQSQDIQP-LVEVEKEVILAALEKTGGNKTEAARQLGITRK 433 A P + D+Q L + E+E+++ AL + G N+T A +LGI+ + Sbjct: 418 AQPAEPHAPPRWSGISEGMPLPNDLQAWLDQQEREILVRALREAGFNRTATAARLGISLR 477 Query: 434 TLLAKLSR 441 + +++R Sbjct: 478 QIRYRIAR 485 >UniRef50_D2R4P1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R4P1_9PLAN Length = 469 Score = 328 bits (840), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 199/460 (43%), Positives = 270/460 (58%), Gaps = 33/460 (7%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD+ S C L+ L + G+ V +A+S Q + +DLV+ DVR+ MDG+ Sbjct: 4 LLVVDDEPSICWGLKQLGKRLGHEVQIASSAEQGIALAGTAPYDLVMLDVRLPGMDGLTA 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK++ L PV+IMTA+ + TAVEA++ GA +YL+KP D ++ L K LA + Sbjct: 64 LKQLHPLLHGAPVVIMTAHGDLSTAVEAVRGGAREYLLKPFDLTQIEQLLAKLLAQKAAP 123 Query: 128 DAETPAVTASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 +SQ G+VG+S AMQ + IALVA SEA VL+ G+SGTGKELVARAIH S Sbjct: 124 AEPANLHRSSQTDGLVGQSLAMQEVFKRIALVAASEACVLVSGESGTGKELVARAIHRYS 183 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 R+ P V +N AALN SL+ESELFGH +G+FTGAD EG + ADGGTLFLDE+ DI Sbjct: 184 DRASGPFVPVNIAALNPSLVESELFGHTRGSFTGADHAHEGLLLAADGGTLFLDEVADIP 243 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 +QV+LLR + EV VGS Q RL++ATH+DL A V +G+FR DLYYRL Sbjct: 244 LPVQVKLLRTLDHGEVMPVGSGQTKKTRFRLVSATHQDLPALVASGQFRHDLYYRLCTFQ 303 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 I +P LR R +D+ LLA H FA +A++ F P+AM + WPGNIREL +A+E Sbjct: 304 ITLPPLRDRGDDVQLLAQH----FASMAGRALQ-FAPEAMKEIRSRHWPGNIRELRSAIE 358 Query: 367 RAVVLLTGEYISERELPLAIA---STPIPLGQSQD-----------------------IQ 400 A+++ I LP +IA ++P G +D + Sbjct: 359 HAMIVARDGVILSEHLPASIAVPRTSPANTGDERDQITTRLREWALARVKEAGETGELYE 418 Query: 401 PLVE-VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 L++ VE ++ A L+K G AAR LG+ R T+ K+ Sbjct: 419 ELLKLVEPPLLEAVLKKCKGQCATAARILGMHRTTVRKKI 458 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 328 bits (840), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 181/445 (40%), Positives = 279/445 (62%), Gaps = 11/445 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+DD S ++ L GY + A++ +A + + LV+ D+ + M G+ Sbjct: 6 ILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAFAILDKASQSLVMTDLHLPGMSGLEL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK+++ P V++MTA+ +++TAVEA+K GA D+L KP+ L+ + + L H I Sbjct: 66 LKKVRLDYPETAVIVMTAFGTIQTAVEAMKAGAYDFLTKPIHPYELKMLVRRCLEHHRLI 125 Query: 128 DAETPAVTA--SQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + TA ++G +VG S + L A VA ++AT+LI+G++GTGKELVA+AI Sbjct: 126 EEVQVLRTALDEKYGFEAIVGSSSQLMRALDVAARVASTDATILIYGETGTGKELVAKAI 185 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S+R ++P +T+NC A+ + LLESELFGH KG+FTGA ++G+ ADGGT+ LDEI Sbjct: 186 HLRSSRRDRPFITINCGAIPKELLESELFGHVKGSFTGALTHKKGKVEMADGGTVLLDEI 245 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G++ +QVR+LR IQERE+++VG+ VDVR++AATHR+LA V AG FR+DLYYRL Sbjct: 246 GEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAGMVKAGTFREDLYYRL 305 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 VV I +P LR+R DI +L HFL++ ++ + + + +Y WPGN+R+LE Sbjct: 306 LVVPINLPPLRERTGDILILVQHFLEKCRMKHSRPNLMMSTDLLPYFTNYSWPGNVRQLE 365 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP------LVEVEKEVILAALEK 416 NAVER V+L I+ +LP +++ P P + + L ++EK++IL AL+K Sbjct: 366 NAVERLVLLARDSTINASDLPDFLSAAPAPPPEPVPVALPEGGINLEDLEKDLILQALKK 425 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 GN+T AA+ L ++R+ +L + Sbjct: 426 YAGNQTRAAQYLNMSRRAFAYRLEK 450 >UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LMY2_SYNFM Length = 458 Score = 327 bits (839), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 186/440 (42%), Positives = 268/440 (60%), Gaps = 10/440 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDDD+ +++A L + V A SG++AL+ ++ DLV+ DVRM M G+ Sbjct: 7 ILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLKAGAVDLVITDVRMPGMGGMDL 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNL----QATLEKALAH 123 EI+ + +PV+ +TAY ++ AV+A+K GA+DYL KP D +L + L K + H Sbjct: 67 FHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDLVLKVKEILRKPVPH 126 Query: 124 THSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + + +P +F GKS +M+ L + +APS+ VLI G+SG GKE VAR IH Sbjct: 127 LPAQETISPK---HEF-WGGKSASMRELQDLVERIAPSDVNVLILGESGVGKERVARLIH 182 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 R P V ++C + LLESELFGH +GAFT A + ++G A+ GTLFLDEIG Sbjct: 183 QKGPRRLFPFVVVDCGSTPTGLLESELFGHVRGAFTHAIRDKKGLIEAAERGTLFLDEIG 242 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 +ISP MQVRLLR +++R+++R+G + I V+ R+IAAT+ DL +V AG FR+DLYYRL Sbjct: 243 NISPEMQVRLLRFLEDRKIRRIGDLREIPVNCRVIAATNVDLPEDVEAGNFREDLYYRLR 302 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV + +P LR+RREDIPLLA HFLQ F E + + L Y WPGN+REL+N Sbjct: 303 VVTLRIPPLRERREDIPLLAQHFLQSFCESQNLPPVRLPQETIRWLSEYPWPGNVRELKN 362 Query: 364 AVERAVVLLTGEYISERELPLA-IASTPI-PLGQSQDIQPLVEVEKEVILAALEKTGGNK 421 A+E VL + +L L+ + P+ P D L E E+ I+ AL++ G + Sbjct: 363 ALEAGAVLCRESVLRPSDLHLSGLPHAPLKPHVSVGDSLSLEESERNAIVRALQQAGWVQ 422 Query: 422 TEAARQLGITRKTLLAKLSR 441 +AA+ LGI+R+ + K+ + Sbjct: 423 KDAAQLLGISRRAINYKIKK 442 >UniRef50_B4CU93 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU93_9BACT Length = 465 Score = 327 bits (839), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 191/450 (42%), Positives = 270/450 (60%), Gaps = 18/450 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 I+VVDD+ L+ALL GY LA++ L VR+ DLVL D+ + + DG+ Sbjct: 10 IVVVDDERPVLLTLEALLTRHGYEPQLAHTATAGLAIVRKSKPDLVLLDLGLPDADGLDV 69 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH-S 126 LKE+KA P +PV+I+TA S+ AVE++K GA ++ KP + L + + +A+ Sbjct: 70 LKELKAELPQLPVIILTANDSLSNAVESIKQGAFHFISKPYAVEELLSLITRAIEQRQLQ 129 Query: 127 IDAETP-----------AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 +AET A Q V +S +M+++ + AP++A VL+ G+SG GK Sbjct: 130 REAETLREEKQELSRRLAHAERQLAPVAQSRSMRNVRDLVERFAPTDANVLLLGESGVGK 189 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E+VA +H S R++ P+V LNCAA +++E ELFG+ KGAFTGA G +A GG Sbjct: 190 EVVANQVHRLSRRADGPMVKLNCAAFPANMIEGELFGYVKGAFTGAVADFPGMIAQATGG 249 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEI ++ +Q R LR +QERE +R+GS + I + RL+AAT+R+ A V G R Sbjct: 250 TLFLDEIAEMPVELQTRFLRVLQEREFRRLGSTKTIPANFRLVAATNRNAAEAVRNGTLR 309 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 QDLYYRLN IE+P+LR+RREDIP L FL RFA++ K P+A D L++YDWP Sbjct: 310 QDLYYRLNTFQIEIPALRERREDIPALVAVFLARFAKQMGKPEPTIAPEAFDRLLNYDWP 369 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP-----LVEVEKEVI 410 GN+REL+NA+E +VVL I+ +ELP I P L +++ L + E++ I Sbjct: 370 GNVRELQNAIEYSVVLADQALITVKELPREI-QLPAALHEARAANAAASLNLEDQERQAI 428 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L AL + GNK +AA LGI R TL K+ Sbjct: 429 LQALTQAHGNKKKAAAILGIHRPTLYNKMK 458 >UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMI3_ACIF5 Length = 461 Score = 327 bits (838), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 193/443 (43%), Positives = 271/443 (61%), Gaps = 16/443 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL +DDD +L L GY+V ++ Q ++ ++ DLV+ D+RM MDG+A Sbjct: 8 ILTIDDDPDFLRLLGLWLESEGYHVLASSDPVQGMQTLQTARPDLVITDLRMPGMDGMAV 67 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ ++AL+P +PV+++TA+ S+ AV A++ A YL KP + LQ ALA H+ Sbjct: 68 LETVQALDPDLPVILLTAHGSIPNAVAAMRAQAFGYLSKPFSNEELQELTTAALAQRHA- 126 Query: 128 DAETPAVTAS---QFG--MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 ET + A+ Q G ++ +SPAM L+ E+A VA S+A+V + G+SG+GKE VARAI Sbjct: 127 GQETRKLRAALRQQAGQSILHRSPAMAALVDELACVANSKASVFLSGESGSGKERVARAI 186 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R + P V +NC A+ L ESELFGH KGAFTGA + G A GGTLFLDEI Sbjct: 187 HDASPRRDGPFVAVNCGAIPAGLAESELFGHVKGAFTGATQDHTGLIRSASGGTLFLDEI 246 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 D+ +QV+LLR +QE ++ VG+ ISVD+R+I+ATH+D+ A G FR+DLYYRL Sbjct: 247 ADLPLTLQVKLLRVLQEGSLRPVGAKTEISVDLRVISATHQDIHALTADGTFREDLYYRL 306 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 +V+ + VPSL +R EDIPLLA HFL R ++R + + GF+P+A+D L+ WPGN+RELE Sbjct: 307 HVIPLRVPSLSERAEDIPLLAQHFLDRESQRMNRDILGFSPEALDKLMQRSWPGNVRELE 366 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE----VEKEVILAALEKTG 418 NAV A + +++ +P GQS PL + E+ + L T Sbjct: 367 NAVTFAAAVTEKGWVAADAIP----DNGRQGGQSA-FPPLQDAKAAFERGYLENLLRATD 421 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 GN + AAR G R T L KL R Sbjct: 422 GNISRAARIAGRHR-TDLYKLMR 443 >UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Planctomycetaceae RepID=D2R3E8_9PLAN Length = 465 Score = 327 bits (838), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 183/447 (40%), Positives = 267/447 (59%), Gaps = 10/447 (2%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 + + IL DD+ + ++ L G+ V + G A+ + +D ++ D+ M M+ Sbjct: 12 NRLKILFADDEAALQELMSLELPRMGHEVTVCPDGPTAVAALELNTYDCIIVDLDMPGMN 71 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 GI + + K L P +++T SS ++A+ AL+ GA DYL KP +L+A L + A Sbjct: 72 GIQVIGKCKELAPDTDAVVLTGKSSFDSAIAALRFGAFDYLTKPCKLVDLKALLHRVAAK 131 Query: 124 THSIDAETPAVT------ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 ++ + A+ + +VG S AM + I VAP+ +TVL+ G++GTGKEL Sbjct: 132 REWVN-KCRALKHQLERLEGKTELVGSSRAMDQVRKLIQKVAPTGSTVLVLGETGTGKEL 190 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARA+H S R+EKP V +NC AL ESL+ESELFGH KG+FTGAD R G F A GGT+ Sbjct: 191 VARAVHQQSLRAEKPFVAVNCGALPESLIESELFGHRKGSFTGADDHRVGLFEVAHGGTI 250 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG++ MQ +LLR ++ E++RVG N VDVR++ ATHR+L V AG FR+D Sbjct: 251 FLDEIGELPKSMQAKLLRVLESGEIRRVGDNNAFVVDVRVVCATHRNLPEMVEAGDFRED 310 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L YR+N + +P LR+R +DI LA H L+RF + FTP+A+ LL + WPGN Sbjct: 311 LMYRINTFELHIPPLRERLDDIEDLASHLLRRFLPTLKAGDTCFTPEAVQLLEKHGWPGN 370 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIP-LGQSQDIQP--LVEVEKEVILAAL 414 +REL N +E A +L I+ LP ++ P L +++ P L ++E + I AL Sbjct: 371 VRELANVIEHASILCDKAPITPENLPQRLSGRIKPQLTRARIAGPISLRDLEMQAIHEAL 430 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 ++ GNK EAA +LGI+ KTL KL++ Sbjct: 431 DRHNGNKPEAAEELGISLKTLYNKLNQ 457 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 327 bits (838), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 185/452 (40%), Positives = 272/452 (60%), Gaps = 27/452 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+ + L+ +L GY V A S Q LE ++ + DL + D+R+ MDG+ Sbjct: 30 ILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLPGMDGLTL 89 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L + L +PV++++ ++ V+A+K GA D+ KP+D D + ++ AL+ + Sbjct: 90 LSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSR-RDL 148 Query: 128 DAETPAVTASQF----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + + A++A + M+G+SPAM+ L +I VAP+ VL+ G+SGTGKELVA +H Sbjct: 149 EGKVQALSARERRFSDDMLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKELVAAEVH 208 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S R++ P V +NCAA+ L+ESELFGHEKG+F+GA RR G+F A GGTLFLDEIG Sbjct: 209 RQSRRADGPFVKVNCAAIPSELIESELFGHEKGSFSGAAARRRGQFEVAHGGTLFLDEIG 268 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+ Q ++LRA+Q EV RVGS + +VDVR+IAAT++DL EV G FR+DL++RLN Sbjct: 269 DMGLSAQAKVLRALQTGEVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFREDLFFRLN 328 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV + VP LR R +D+P+LA F Q N K P D L + WPGN+REL N Sbjct: 329 VVPLTVPPLRDRLDDVPVLAERFFQLATRENGLRPKPVDPAVYDRLRQHRWPGNVRELRN 388 Query: 364 AVERAVVLLTGEYISERELPLAIAST----------------PIPLGQSQDIQPLVEVEK 407 ER +V+++GE I+ ++P + +PL + +D+ VE+ Sbjct: 389 VCER-MVIMSGERITAADVPETVGPRAAPPPPPGSADLSRYGEVPLKELRDL-----VER 442 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 + IL+ LE+ N T+AA+ LG+ R L K+ Sbjct: 443 DYILSRLEEHDWNITQAAQALGVERTNLHKKI 474 >UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Proteobacteria RepID=A0LDW4_MAGSM Length = 504 Score = 327 bits (838), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 193/490 (39%), Positives = 268/490 (54%), Gaps = 59/490 (12%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILV DDD + +L+ L GY V + + + + DL++ DV M G+ Sbjct: 9 ILVADDDQAVRFVLEQALSRAGYKVHAFGNTQPLVNHFNQYGGDLIITDVVMPGGSGLDM 68 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 ++ +KA P +P+++MTA S++ AV+A + GA +YL KP D + L +AL Sbjct: 69 VQSLKATYPDLPIIVMTAQSTLRNAVQAFERGAFEYLAKPFDINRLVDLTRRALQKQEER 128 Query: 128 DAETPAVTASQ---------------FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 P Q G++G S AMQ L I ++ SE TVLIHG+SG Sbjct: 129 VRNQPQTKTKQQAAAEDMDRQLEERFGGIIGSSRAMQALFHTIGRLSNSEMTVLIHGESG 188 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKELVARA+HA S R P +N AA+ L+ESELFGHEKGAFTGA RR G F +A Sbjct: 189 TGKELVARAVHAYSPRRRGPFTAINMAAIPRDLIESELFGHEKGAFTGAVSRRPGHFQKA 248 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 +GGTLFLDEIGD+ Q RLLR +QE VGS I+ DVR+IAATH+DL ++ G Sbjct: 249 EGGTLFLDEIGDMPMEAQTRLLRVLQEGTFTLVGSTDILRSDVRIIAATHQDLPTAISEG 308 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 RFR+DL+YRLNV+ + VP+LR R+EDIP+L+ +FL + ++ + A K T AM+ L+ Y Sbjct: 309 RFREDLFYRLNVIPLHVPTLRSRKEDIPVLSQYFLAKTSKELKVATKRLTQSAMEKLVAY 368 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQS---------------- 396 DWPGN+RELEN + R VL+ + I ++ L + P L ++ Sbjct: 369 DWPGNVRELENLIRRLTVLIPEDEIRPEKIELYERTMP-KLARNDLSGHEPQEERSTESN 427 Query: 397 ----------QDIQP-----------------LVEVEKEVILAALEKTGGNKTEAARQLG 429 QD+ L ++E +I L +T GN+ +AA+ LG Sbjct: 428 TSHSYEAILLQDLDTFFATMGGLETSGVYDMVLRKMEAVLIPRVLRQTRGNRVKAAQILG 487 Query: 430 ITRKTLLAKL 439 I R TL K+ Sbjct: 488 INRNTLRKKM 497 >UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLY7_DESAH Length = 463 Score = 327 bits (837), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 172/456 (37%), Positives = 275/456 (60%), Gaps = 25/456 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+ + + + +L GY V + SGR+ L+++ FDLVL D++ ++GI Sbjct: 6 ILVVDDEPAIASGCKMILSEQGYRVEIEISGREGLKKLLSSPFDLVLLDIQFPHINGIDI 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LKE+K P + V+IMT +V AV+A+K+GA D++ KP + L ++ KAL + Sbjct: 66 LKEVKKQRPDLAVIIMTGNGTVNNAVDAMKSGAFDFITKPFSEEQLVCSVTKALESIKLV 125 Query: 128 DAETPAVTASQF------GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 E ++ + ++G++ ++ + +I V+P ++TVL+ G+SGTGKEL A+A Sbjct: 126 -KENNSLKKQLYDKFDFSNIIGETSEIKKIFEKIERVSPMDSTVLLDGESGTGKELFAKA 184 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R+ + ++C+ + +++ESELFGH KGAFTGA+ EG F A GTLFLDE Sbjct: 185 IHVRSTRASCRFLAVDCSTFSSTVMESELFGHVKGAFTGAETAHEGIFGAACDGTLFLDE 244 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 +G++ +Q +LLR ++ E + VGSNQI R++AAT+++L + G FR+DL+YR Sbjct: 245 VGNLDLDIQGKLLRVLETGEYKPVGSNQIKKSQARVVAATNKNLVQMIKEGTFREDLFYR 304 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV I++P LR+RR+D+P +A HFL+ F + K + GF+ A+ L+++DWPGN+R+L Sbjct: 305 LNVFPIKIPPLRERRDDVPKIAYHFLRLFCRKAHKKIHGFSDDALSALVNFDWPGNVRQL 364 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE----------------V 405 +N VER V++ E + REL + P+ L +DI +E V Sbjct: 365 KNVVERLVIMCDKEQLDHRELMDNLEIKPVAL--VRDIPLTLEELKRARKDFLEDSFRPV 422 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E+ +L AL+ GN T+AA+ +G+ R A + + Sbjct: 423 ERLFLLRALDDAKGNITQAAKAVGMQRSNFSAMMKK 458 >UniRef50_C9XR17 Two-component response regulator n=5 Tax=Clostridiales RepID=C9XR17_CLODC Length = 440 Score = 326 bits (836), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 170/438 (38%), Positives = 269/438 (61%), Gaps = 10/438 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR-EQVFDLVLCDVRMAEMDGIA 66 IL+VDD++ + +++ +L+ GY V +A SG +A+ ++ ++ +DLVL DV M MDG+ Sbjct: 3 ILLVDDELEYGVVMKKILQKKGYLVDIALSGEEAINIIKKDKNYDLVLSDVMMKNMDGVQ 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L IK++N I V+++T Y S+E AV+A+K GAL Y IK +NL +EK A S Sbjct: 63 LLDRIKSINRDIEVILVTGYGSIENAVDAMKRGALSYFIKSNPIENLLEEVEKVKASKIS 122 Query: 127 IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 + + +F + K+ +++ A + +LI G+SG GK+++AR IH+ S Sbjct: 123 VSVQKNNF---EFTLESKNRDFNNIIKIAKKAACKDVNILILGESGVGKDILARYIHSIS 179 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 R + V +NC + +E+LLESELFGHEKG+FTGA R+GRF ++ GTLFLDEIGDI Sbjct: 180 PRKNEIFVPVNCCSFSENLLESELFGHEKGSFTGAVDSRKGRFELSNKGTLFLDEIGDIP 239 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 +QV+LLR ++++ ++R+GSN+ I VD RLI A +++ E++ G R+D +YR++ + Sbjct: 240 LNVQVKLLRTLEDKSIERIGSNKSIKVDFRLICAMNKEPKVEISNGNIREDFFYRISTIT 299 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 I +P LR+RRED+ L FL ++ + K + + D L++Y++PGNIREL+N + Sbjct: 300 ITIPPLRKRREDLTTLIEFFLNKYQIEHDKKIHSIDKEVKDFLLNYNYPGNIRELKNIIN 359 Query: 367 RAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK----TGGNKT 422 R VVL +S+ L L S + + I+PL E+ KE +EK G N + Sbjct: 360 RLVVLSEEGNLSKDNLNL--ISNNVYIDDKISIRPLREIRKEFECEYIEKVLSLCGNNIS 417 Query: 423 EAARQLGITRKTLLAKLS 440 A++L I+R+ L K+S Sbjct: 418 NTAKKLEISRRQLTNKIS 435 >UniRef50_A0LL20 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL20_SYNFM Length = 441 Score = 326 bits (836), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 181/442 (40%), Positives = 265/442 (59%), Gaps = 3/442 (0%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M + ILV+DD +LQ L G+ V + +A+ + Q LV+ D+RM Sbjct: 1 MADERTSILVIDDSRDTLEVLQRNLVSRGFQVLAVSEVSEAIRLLETQNISLVITDIRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++DG + ++ ++ + VL +T + +++ A+ A+KTGA +YLIKP + L + ++ A Sbjct: 61 KVDGFSVIRHVRENCKGVEVLAITGFPTIDGAIRAMKTGAGEYLIKPFTDEELFSAIDHA 120 Query: 121 LAHTHSIDAETP-AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 LA +P A Q+G++G+S AM + I A S ATVLI G+SGTGKEL+A Sbjct: 121 LARLRLKKQASPSAAPRRQYGIIGESRAMMQVYEAIEHAASSSATVLIQGESGTGKELIA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH S R+ P V +NC + E LLESELFG+ KGAFTGA R G F AD GT+ L Sbjct: 181 RAIHYGSRRAGFPFVPVNCGGIPEPLLESELFGYTKGAFTGAAGSRAGFFQTADRGTILL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEI + S MQ++LLR +QE E+ +GS++ V++R++AAT+R L V G FR+DL+ Sbjct: 241 DEISEASLPMQIKLLRVLQEGEICMLGSSKPRKVNIRIVAATNRVLHELVRQGLFREDLF 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNV+ I+ P LR R +DI LL HF++ F+ER + + + +L Y WPGN+R Sbjct: 301 YRLNVITIDAPPLRDRGDDIVLLVNHFVKTFSERYGRTPPRLSEALLGILRAYHWPGNVR 360 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGG 419 ELEN + R + + + + +LP + + + G+ + L EVE E + L+ GG Sbjct: 361 ELENVIHRLLSMPSSTTLDIPDLPPFMRFSAV--GEGSLNRTLAEVEAEHVRRVLDSVGG 418 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 NKT AAR LG+ RKTL AKL + Sbjct: 419 NKTLAARILGVDRKTLRAKLRK 440 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 326 bits (836), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 190/469 (40%), Positives = 283/469 (60%), Gaps = 30/469 (6%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M H+ I L+VDD+ L +L GY V A SG +A+ ++ D+ L D+R+ Sbjct: 1 MEHNRI--LIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLP 58 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + DG+ L++ K + + V+++TA + V++AV ALK GA DY+ KP + + L+ ++KA Sbjct: 59 DADGLDLLQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPFNMEALRHVIDKA 118 Query: 121 LAHTH---SIDAETPAV--TASQFGMVGKSPAMQHLLSEIALVAPSEA-TVLIHGDSGTG 174 +D + +VG S +M +L I + A ++A TVLI G+SGTG Sbjct: 119 FEKRQLREKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIKVCADTDAKTVLILGESGTG 178 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KELVARAIH SAR+E P +NCAA+ E+LLESELFGHEKGA+T A KRR+G F A+G Sbjct: 179 KELVARAIHNHSARAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKRRKGIFELAEG 238 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GT+FLDEIGD+ MQ ++L+ I+ + +R+G+ + I DVR+IAATH+DL A V RF Sbjct: 239 GTVFLDEIGDMPFSMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDLPAMVKERRF 298 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R DL+YRLNV+ I +P LR+R +DIP L +F++R E + V+G +P+ M L Y W Sbjct: 299 RGDLFYRLNVMNIPLPPLRERTDDIPSLVQYFIERLNEEYGRRVEGVSPETMAYLTGYGW 358 Query: 355 PGNIRELENAVERAVVL--------------LTGEYISERELPLAI---ASTPIPLGQSQ 397 PGN+REL NA+ER ++L + +Y + + L + AS + Sbjct: 359 PGNVRELRNAIERTMMLEHSRILTPVFLNAEIKQQYETAQNKSLHVDSHASAQHSFARGH 418 Query: 398 DIQP-----LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 P L E+E+++I LE +GGN+T+AA+ L ++R TL ++ + Sbjct: 419 ITIPTGGISLEELERQLIRMGLEISGGNQTKAAKYLKMSRDTLRYRMKK 467 >UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio RepID=B8KA97_VIBPA Length = 464 Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 180/444 (40%), Positives = 265/444 (59%), Gaps = 13/444 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+V+D S + ++ L ++ + +GR A+E + + DL+L D+R+ +M G+ Sbjct: 13 LLMVEDTASVAALYRSYLTPLCIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDV 72 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L +K NP +PV+ MTA+ S++TAVEA++ GA D+LIKP + D L+ T+ AL + Sbjct: 73 LYAVKKKNPDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNALRKASKL 132 Query: 128 --DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 +A+ P Q G +G S MQ + I A S+A++ I G+SGTGKE+ A AIHA+ Sbjct: 133 KNEADYPGNQGYQ-GFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAT 191 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S R +KP + +NCAA+ + L+ESELFGH KGAFTGA R+G ADGGTLFLDE+ ++ Sbjct: 192 SKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEM 251 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 +Q +LLR IQ Q+VGS+++ SVDVR + AT+RD EV GRFR+DLYYRL V+ Sbjct: 252 DLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVEEGRFREDLYYRLYVI 311 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 + +P LR+R +DI +A L ++ K +PQ +D Y+WPGN+R+L+N + Sbjct: 312 PLHLPPLRERGDDIIEIAYSLLGFMSKEEGKDFVRLSPQVVDRFASYEWPGNVRQLQNVL 371 Query: 366 ERAVVLLTGEYISERELPLAIAS-------TPIPLGQS---QDIQPLVEVEKEVILAALE 415 VVL G+ I LP + +P+ QDI PL EK I A++ Sbjct: 372 RNVVVLNNGKEIDLSMLPPPLNKPTENQIRVDLPVSDEFSVQDIFPLWLTEKRAIEQAIK 431 Query: 416 KTGGNKTEAARQLGITRKTLLAKL 439 GN +AA L ++ T+ KL Sbjct: 432 ACDGNIPKAAGYLDVSPSTIYRKL 455 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 165/382 (43%), Positives = 253/382 (66%), Gaps = 5/382 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ S L +L G+ V A +G +A++Q+ + DL+L D+ M MDG+ T Sbjct: 5 ILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMDGLET 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK+++ +P++PV+++T + ++ETAV+A K GA D++ KPL + + T+ AL + + Sbjct: 65 LKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNAL-NFRRL 123 Query: 128 DAETPAVTAS---QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 + E + + + G SPA+ + ++I VAP+++ VLI G++GTGKE+VAR IH Sbjct: 124 EEENLYLRKKALEKHSITGFSPAIMEVRNQINTVAPTDSWVLISGENGTGKEMVARTIHH 183 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 SARS+ P+VT+NCA++++ +ESELFGHEKGAF GA +R+ GRF A+ GTLF DE+GD Sbjct: 184 LSARSDHPMVTVNCASISKKFMESELFGHEKGAFPGAKQRKRGRFELANQGTLFFDEVGD 243 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + Q R+LR ++ ++ QRVG + I+VDVR+IA+T+++L E+ G FR+DLYYRLNV Sbjct: 244 MDMETQSRILRVLENQKFQRVGGGRTITVDVRVIASTNKNLEEEIIKGAFREDLYYRLNV 303 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRF-AERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 V I +P L++R +DIP L F + F A N K + A++ L+ Y WPGN+REL N Sbjct: 304 VPIAMPPLKERAQDIPSLCEEFFREFAAADNLDEPKTISQNALEALMRYPWPGNVRELRN 363 Query: 364 AVERAVVLLTGEYISERELPLA 385 VER V+ ++ R +P A Sbjct: 364 LVERLVISTKASHVDIRHIPPA 385 >UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 Tax=Planctomycetaceae RepID=Q7UVW6_RHOBA Length = 485 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 185/450 (41%), Positives = 274/450 (60%), Gaps = 20/450 (4%) Query: 6 IDILVVDDDISHCTILQALLRGWGY---NVALANSGRQALEQVREQVFDLVLCDVRM-AE 61 + +L+VDD+ + I L RG ++ A S +AL++ F LV+ DV+M + Sbjct: 38 LHLLIVDDEPN---IRSGLARGLEKICDHIETAGSVNEALDKFDAGHFQLVIADVQMPGD 94 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 DG+ + I+ +P +++TA +VETAV+A+K GA D+++KP+D + ++ + KA Sbjct: 95 RDGLELISLIRQRDPGTTCIVITANGTVETAVDAMKRGAFDFIMKPVDLNLIRQQVAKAA 154 Query: 122 AHTHSIDAETP------AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 H H + E A G +G Q+L+ +I VA ++ATVL+ G+SGTGK Sbjct: 155 EH-HQLRNENHHLREQLAEAGELTGFIGNCQTFQNLVDKIRQVAATDATVLVQGESGTGK 213 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+ARA+H S R+ P V +N AL ESLLESELFGHEKG+FTGA +++ G F +A GG Sbjct: 214 ELIARAVHDLSNRNNAPFVAVNLGALPESLLESELFGHEKGSFTGASRQKPGCFEQASGG 273 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEI +I QV LLR ++ + RVG +++ + R+++AT++ + V G FR Sbjct: 274 TLFLDEITEIPAKSQVDLLRVLETGQYARVGGEELLQSNARIVSATNQVASKLVEDGAFR 333 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYRLN++ IEVP LR RREDIPLL HFL+RF R+R+ +K P+AM +L WP Sbjct: 334 EDLYYRLNIIPIEVPPLRNRREDIPLLVEHFLKRFCARHRRPLKRIVPEAMQMLSQSHWP 393 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEV----EKEVIL 411 GN+R+L N +ER VV + E I +LP + QS ++ LVE+ EK I Sbjct: 394 GNVRQLRNHIERLVVTVPAETILAADLPCELHQQNA--AQSTALKTLVEITESAEKTGIE 451 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL ++ + A+ LGI+ +TL K++R Sbjct: 452 LALSAKKSHREQTAKALGISVRTLHYKMNR 481 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 188/455 (41%), Positives = 271/455 (59%), Gaps = 29/455 (6%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+V+D+ T L L+ W Y A G +ALE+VR +V+ D++M MDG+ Sbjct: 27 VLIVEDEPHALTGLAELVSAWDYRTETARDGIEALEKVRGWQPAIVVTDLKMPRMDGMQL 86 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ + ++ + V+++TA S+E+AVEA+K GA DYL KP+D L+ L ++ + Sbjct: 87 LERLNQMDGSRAVIVLTAQGSIESAVEAMKIGAFDYLQKPVDSVRLRTILSN-VSRQLEM 145 Query: 128 DAETPAV-----TASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 E A + S G MVG S M+ + S I VAP+ +VLI G+SGTGKELVA+ Sbjct: 146 QREMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGKELVAKT 205 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S R KP V +NCAA+ E+L+ESE+FGHEKGAFTGA +RR G F A+ GTL LDE Sbjct: 206 LHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIERRAGCFELAEEGTLLLDE 265 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ Q +LLR +++R +R+GS +DVR++AAT+++ V G R DLYYR Sbjct: 266 IGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGELRGDLYYR 325 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV I +P LR+ +EDIP +A + ++ +A++G + L+ YDWPGN+REL Sbjct: 326 LNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDEMQARLLSYDWPGNVREL 385 Query: 362 ENAVERAVVLLTGEYISERELP-----------LAIASTP------IPLGQSQDIQPLVE 404 N +ERAV+L TG+ + + LP A+ + P + +G + D E Sbjct: 386 RNTMERAVILCTGDRLQAQHLPPGFGTARPLKTAAVTAEPPANAVQVEVGTTVD-----E 440 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 E+ +IL LE T NKT AA LGI+ KTL KL Sbjct: 441 AERLLILKTLESTHNNKTRAAEILGISLKTLHNKL 475 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 182/471 (38%), Positives = 272/471 (57%), Gaps = 37/471 (7%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L++DDD +L+++ G Y + L + AL++V ++ + D+ + + GI Sbjct: 5 LLILDDDHDILLMLKSVFAGEDYELLLESDSEGALKRVISDRPNVAIMDISLPQKSGIEV 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL-----A 122 LKE K ++P + V++ T Y + + A+EA+K GA DY+ KP D L+ ++KAL + Sbjct: 65 LKEAKKIDPGLAVIMATGYKTTQNAIEAMKHGAFDYVTKPFDMTKLKGAVKKALECNLLS 124 Query: 123 HTHSIDAETPAVTA--SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 E P V ++ M+G SP M + + VA S+ATVLI G+SGTGKEL+AR Sbjct: 125 RKVRYTRERPQVEEDLTEDLMIGSSPEMIEIWKMVGTVADSDATVLIQGESGTGKELLAR 184 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A++ +S R +P + +NCAAL E+LLESELFGHEKGAFT A RR G+F + +GGT+FLD Sbjct: 185 AVYNNSKRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHSRRIGKFEQCNGGTIFLD 244 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++S Q + LR ++ +E +RVG N+ I VDVR+IAAT++ L V FR DLYY Sbjct: 245 EIGEMSQANQGKFLRVLENQEFERVGGNETIKVDVRVIAATNKSLITNVKEKTFRMDLYY 304 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL VV +P LR R EDIPLL F+++F+++ K +K P+ + +L + W GNIRE Sbjct: 305 RLRVVNFFLPPLRDRAEDIPLLVELFVKKFSKKYGKNIKAVAPETLAMLTSHPWEGNIRE 364 Query: 361 LENAVERAVVLLTGEYI-------------SERELPLAIAST-----------PIPLGQS 396 L+N + A V G+ + +E+ L A P+ G Sbjct: 365 LKNVINSATVFCRGDILVPGDFESFLTAKAGFKEVDLEAAGDDYYEVFWSMLEPVFDGIC 424 Query: 397 QDIQPLVE------VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 Q + + +EK +I A+EK+ N+ AA+ LGI+R TL +L R Sbjct: 425 QKNKGAIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLER 475 >UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q500_9BACT Length = 457 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 167/424 (39%), Positives = 268/424 (63%), Gaps = 7/424 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL++DDD S +LQ L+ GY+V++A G +A + + +LVL D+R++E +GI Sbjct: 6 ILIIDDDASILEVLQMRLKALGYSVSIAKDGDEAKTVLFQNKINLVLVDLRLSEENGIEL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH---T 124 +++I P +P++I+TA+ S+E+AVEA++ GA Y+ KP D+L ++ AL T Sbjct: 66 MRDIIKNYPKLPIIIITAHGSIESAVEAMRRGAYSYIAKPFRNDDLAMQIKNALEKQRLT 125 Query: 125 HSIDAETPAVTA-SQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 I+ + + F ++GK+ M +L ++ V+ ++ V+I+G+SGTGKEL+ARAI Sbjct: 126 QEIEYLRNQLDERNNFNPIIGKNKQMLEILELVSRVSKTDCNVIIYGESGTGKELIARAI 185 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R+ P + NC A+ E LLE+ELFGH +GA+T A + +EG F +AD G++FLDEI Sbjct: 186 HQNSNRANGPFIATNCGAIPEGLLENELFGHIRGAYTDAHESKEGLFAQADKGSIFLDEI 245 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 + S + Q++LLR +QERE++ VGS + ++VR+IAA++ DL V+ G FR DL+YR+ Sbjct: 246 SNTSMIFQIKLLRVLQEREIKPVGSTKNRKINVRIIAASNTDLQKAVSEGTFRDDLFYRI 305 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 +V+ + +P LRQR++DIPLLA +F+ F + +K GF+P A+ ++ YDWPGNIREL Sbjct: 306 HVMPVYLPPLRQRKDDIPLLATYFITEFCKALKKDPLGFSPAALQRMLLYDWPGNIRELR 365 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKT 422 N +E A ++ I ++ +T +D + E+E I L+ GN T Sbjct: 366 NKIEHAAIVANKNNIEPEDIFPERNTTTNVFHSYKDAKE--RFEREYIENLLKANNGNIT 423 Query: 423 EAAR 426 A++ Sbjct: 424 NASK 427 >UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteria RepID=A4J6T1_DESRM Length = 512 Score = 325 bits (832), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 169/379 (44%), Positives = 251/379 (66%), Gaps = 11/379 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L++DD+ S T LL+ GY V +A SG QA E V + +D+ + D+++ + DG++ Sbjct: 7 VLIIDDEQSVGTFFSRLLKPKGYRVGVACSGVQAHELVAKDHYDVAMVDLKLPDADGLSL 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNL---QATLEKALAHT 124 L+ IK + P V+IMT YS+ TAV+A++ GA DY+ KP FD++ + +EKAL Sbjct: 67 LQHIKNVQPQCEVIIMTGYSTTRTAVKAIQYGAFDYIEKP--FDDILLIEKLIEKALNFG 124 Query: 125 HS---IDAETPAVT--ASQFGM-VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + +D ET + + A + G VG++P M L+S +A + VLI G++GTGKE++ Sbjct: 125 MTDGQMDKETFSWSKVAEKIGFQVGRTPQMIKLVSIAERIAAKDINVLIQGETGTGKEVL 184 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 AR +HA+S RS+KP + +NC AL E+LLESELFGHE+G+FTGA +R+G F A+ GTLF Sbjct: 185 ARFVHAASQRSDKPFLAINCGALPENLLESELFGHERGSFTGASVQRKGIFELANNGTLF 244 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG+ S +QV+LLR ++ E RVG + + +VR+IAAT+ DL V +FR+DL Sbjct: 245 LDEIGEASLAIQVKLLRVLETGEFLRVGGEKPVKTNVRIIAATNVDLEEAVKQKQFREDL 304 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRL+V+ + +P L++R EDIP HF+ RF ERN V F P ++ +++Y WPGNI Sbjct: 305 FYRLDVIRLVLPPLKERLEDIPQFVEHFVNRFWERNDGPVPAFAPSCIEAMLNYHWPGNI 364 Query: 359 RELENAVERAVVLLTGEYI 377 REL N+VE+A+ L G + Sbjct: 365 RELANSVEQALALCDGNAV 383 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 325 bits (832), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 188/443 (42%), Positives = 267/443 (60%), Gaps = 18/443 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL++DDD S +L G GY V + + LE D+++ D+R+ +MDGI Sbjct: 6 ILIIDDDASQLELLNIFFSGRGYAVHCSATAMAGLEARATFHPDVIVLDIRLPDMDGIEV 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ + +I V+++TAY +ET V+A+K GA +Y+ KP+D D L+ + +AL ++ Sbjct: 66 LRSLDTGKSSINVIMITAYHDMETTVKAMKLGAYEYITKPIDVDELEDAVCRALKNSELR 125 Query: 128 DA-ETPAV-TASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 +A E PAV T Q G M+G S M+ + I +++ + TVLI G++GTGKEL+ARAIH Sbjct: 126 EAKELPAVKTFLQKGPMIGNSKPMKEVFKMIGVLSENNVTVLIEGETGTGKELIARAIHD 185 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 + P + +NC+A+ +LLESELFGHEKGAFTGA ++G+F A GT+FLDE+G+ Sbjct: 186 YGPHKDHPFIPINCSAIVGTLLESELFGHEKGAFTGAFATKKGKFELAGEGTIFLDEMGE 245 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 I +Q +LLR +Q++ QRVG + + R+I AT++DL V AG FR+DLYYRL+ Sbjct: 246 IPIELQAKLLRFLQDKAFQRVGGEKFLHSKARVIVATNKDLLQMVRAGTFREDLYYRLSA 305 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 I VP LR+RREDIP L H ++ K + +A+ ++ YDWPGN+REL N Sbjct: 306 AKINVPPLRKRREDIPFLLDHMVKEINAELGKRIDRVDKKALLRMMEYDWPGNVRELRN- 364 Query: 365 VERAVVLLTGEYISER-ELPLAIASTP-IPLGQSQDIQP------LVEVEKEVILAALEK 416 +LTG IS R E L A P + G QDI P L EVE+E IL L Sbjct: 365 ------VLTGAAISTRGETLLDDAILPFLGAGTVQDIFPPGAALSLREVEREHILKILHY 418 Query: 417 TGGNKTEAARQLGITRKTLLAKL 439 T GN T +A+ LGI+R TL K+ Sbjct: 419 TNGNITSSAQILGISRPTLRQKI 441 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 324 bits (831), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 171/382 (44%), Positives = 244/382 (63%), Gaps = 8/382 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL++DD+ L+ +L G+ V A SG L + + DLV D+ M MDG+A Sbjct: 5 ILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMDGLAV 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH---- 123 L ++ A P +PV++++ + ++ETAV A++ GA D++ KPL + + ++AL + Sbjct: 65 LDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEYGDLR 124 Query: 124 --THSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 ++ P A + M G+SP M+ L +IA VAP++A VLI G++GTGKEL ARA Sbjct: 125 RENEALRDSLPTAHADE--MNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAARA 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IHA S R+++PLV +NCAA+ E L+ESELFGHEKGAFTGAD + G+F A GTLFLDE Sbjct: 183 IHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFLDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+S Q ++LR +QE++ +RVG ++ + VDVR+IAAT+++L E+ AG FR+DLYYR Sbjct: 243 IGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLYYR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L V + +P LR+R D+PLL F QR A F P A + L Y WPGN+REL Sbjct: 303 LRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNVREL 362 Query: 362 ENAVERAVVLLTGEYISERELP 383 N VER ++L G ++ LP Sbjct: 363 RNFVERMLILHAGLEVTRSMLP 384 >UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G7F8_GEOUR Length = 457 Score = 324 bits (831), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 184/449 (40%), Positives = 270/449 (60%), Gaps = 9/449 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 +T ILV++DD +L L GY V A+ G + L++ R++VF++VL D+RM Sbjct: 5 VTRKEAKILVIEDDKPLRELLHMELTRSGYKVESASDGEEGLDKYRQEVFNVVLLDMRMP 64 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG+ L++++ + V++ T + ++ETAVE +K GA DYL KP+ D L+ ++KA Sbjct: 65 GMDGVEVLRQMRTESTIPEVIVFTGHGTIETAVECIKYGAYDYLTKPVKLDELEMVIDKA 124 Query: 121 LAHTH----SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 +I+ + Q +VGKS +Q +L + ++ VLI G+SG GKE Sbjct: 125 NEKNRLRLENINLKLEISKLDQHRIVGKSQVIQKVLETVRRWGATDEHVLICGESGAGKE 184 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L ARA+H +S R+ KP VT+NC L+ + ESELFGH +GAFTGA+K R G F AD GT Sbjct: 185 LFARAVHDASRRANKPFVTVNCGRLSANTAESELFGHVQGAFTGANKGRAGLFELADTGT 244 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LF+DEI ++ +QV+LLR ++ +R+G N ISVDVR + A+++ L VN G FR+ Sbjct: 245 LFMDEISEMPLDVQVKLLRILETGTFRRMGGNHDISVDVRFVFASNKKLEDCVNRGEFRE 304 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL++R+N++ I +P LR+R EDI L+ +FL+ A + A + +AM L Y WPG Sbjct: 305 DLFHRINLLPINIPPLRERPEDIIPLSYYFLKS-ANESGSANWEISEEAMAALCAYSWPG 363 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQS--QDI--QPLVEVEKEVILA 412 N+REL N + RA +L T + IS LP + T + D+ PL VE++ I Sbjct: 364 NVRELRNTIRRASILATDQIISSDLLPFSPPKTAPSFAVTGLPDVLPLPLWVVERDYIQK 423 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 LEK GNK++AA+ L I RKTL KL R Sbjct: 424 VLEKLEGNKSKAAKVLEIDRKTLYTKLER 452 >UniRef50_B4D4B5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4B5_9BACT Length = 466 Score = 324 bits (830), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 182/449 (40%), Positives = 269/449 (59%), Gaps = 9/449 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M I ILV+D D + + A L+ GY V++A++ AL E++F+LV+ Sbjct: 1 MDPAKIHILVLDRDPAAARAISASLQPVGYQVSIASNEPAALILAEEKLFNLVVKSFDEQ 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +D IA + +I + P + ++ ++ TAV+A++ GA DYL KP+ D L ++ KA Sbjct: 61 RIDAIALMNKIHGITPDTQFIFVSEKGTIGTAVDAIRKGAFDYLSKPIKADQLIESVRKA 120 Query: 121 LAHTHSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L H + + + GKS AMQ + I ++P++ TVLI G+SGTGK Sbjct: 121 LEHQALVAEDQRLKLRLRRRSEPDIFAGKSAAMQEINRLIQQISPTDVTVLIEGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E+VARAIH S R+ +P + +NCAAL ++L+E+ELFGH +GAFTGA R GRF A GG Sbjct: 181 EIVARAIHEKSRRNARPFIAVNCAALPDNLIEAELFGHTRGAFTGAISDRPGRFQLAHGG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIGD+S Q LLR +++ + VGS++I D R++AA++++L AE G+FR Sbjct: 241 TLFLDEIGDLSSKGQGDLLRVLEDGIFRPVGSHKIERADARIVAASNKNLEAEGINGKFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLN+V I +P LR+R EDIP L F + F ++R+ K F+ + + WP Sbjct: 301 EDLFYRLNIVTIHIPPLRERAEDIPHLVQSFSEHFCAKHRRRQKRFSREVVAFFQTLRWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP---LVEVEKEVILA 412 GN+R+L N +ER VV + I +LP A+ + P Q+ IQP L +VE E+I Sbjct: 361 GNVRQLRNIIERLVVTVPRNVIETEDLPAALVQSSRP-DQAFTIQPGMSLAQVEAELIRQ 419 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L K N+ EAA +LGI+R+ L K+ R Sbjct: 420 TLLKVTSNRAEAAERLGISRRALQYKIVR 448 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 324 bits (830), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 189/446 (42%), Positives = 269/446 (60%), Gaps = 18/446 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDD+ + IL+ L+ G+ A +GR+AL +++Q DLV+ D+ M M GI Sbjct: 14 ILIVDDEGTSLLILENYLQHHGHVAICAANGREALALLKKQPVDLVISDLVMPGMGGIEF 73 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL-----A 122 + K +P +P + TA S+E+AV A+K GA DYL KPLD +++AL + Sbjct: 74 MDLAKERHPGLPFIFYTALGSIESAVSAIKQGAFDYLEKPLDPKTFDVVIQRALEFARLS 133 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPS-EATVLIHGDSGTGKELVARA 181 H + E A S +V +SPAM+ +L + VA S TV + G+SGTGKE++ARA Sbjct: 134 HENVQLREHFAELFSFQNIVTQSPAMRTVLELASRVAASPRTTVSLTGESGTGKEVLARA 193 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S V +NCAA+ E+LLESELFGH +GAFTGA++ REG+F A GGT+ LDE Sbjct: 194 IHFASGCLPSNFVAVNCAAIPEALLESELFGHVRGAFTGAERDREGKFSLARGGTVLLDE 253 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ +Q +LLR ++ER ++VG N+ VD R+I AT+RDLA V GRFR+DLY+R Sbjct: 254 IGDMPLPLQAKLLRVLEERTFEKVGDNRPQPVDFRVIVATYRDLAQLVRKGRFREDLYHR 313 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 +NVV I +P LR+R EDIPLL FL+ F + KA+ G + +AMDLLI + WPGN+REL Sbjct: 314 INVVPIAIPPLRERLEDIPLLVDFFLKLFRQHQGKALPGVSKKAMDLLIAHSWPGNVREL 373 Query: 362 ENAVERAVVLLTGEYISEREL------------PLAIASTPIPLGQSQDIQPLVEVEKEV 409 N +E A ++++ E I L P + + + + L V V Sbjct: 374 RNVLEYAAIMVSDELIRPEHLRLSSSSPSASALPSSSGTVEFHISLPAEDVSLDAVVSRV 433 Query: 410 ILAALEKTGGNKTEAARQLGITRKTL 435 + +AL++ GNK+ AA L + RK Sbjct: 434 LESALQRCHGNKSRAAALLKVNRKMF 459 >UniRef50_D2UGQ5 Probable two-component regulatory system regulatory ntrc transcription regulator protein n=1 Tax=Xanthomonas albilineans RepID=D2UGQ5_XANAL Length = 474 Score = 323 bits (829), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 194/463 (41%), Positives = 267/463 (57%), Gaps = 25/463 (5%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVF-DLVLCDVRMAE 61 H I VVDDD S +L LR GY+V ++ AL+ + E+ DL+ DVRM Sbjct: 6 HGTQRIWVVDDDRSVRFVLSTALRDAGYSVDSFDNAIAALQALVERSPPDLLFTDVRMPG 65 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 DG+ L ++KA +P +PV++M+AY+ V + A + GA ++L KP D D+ A +AL Sbjct: 66 DDGLVLLDKLKAAHPQLPVIVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAARAL 125 Query: 122 AHTHSIDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + TP V+A ++G +PAM+ L I +A + +VLI+G++GTGKELVA Sbjct: 126 PESSPGVVATPPVSAHGSAELIGDTPAMRALFRAIGRLAQAPLSVLINGETGTGKELVAH 185 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H S R+ KP V LN AA+ LLE+ELFGHE GAFTGA +R GRF +ADGGTLFLD Sbjct: 186 ALHNESPRARKPFVALNTAAIPAELLENELFGHEAGAFTGAQRRHIGRFEQADGGTLFLD 245 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ +Q RLLR + E E RVG ++I VDVR+IAATH+DL A V GRFR DL + Sbjct: 246 EIGDMPLPLQTRLLRVLAENEFFRVGGRELIRVDVRVIAATHQDLEALVEQGRFRADLLH 305 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL+VV +++P LR+RR D+P LA +FL A + K +P A+ +L Y WPGN+RE Sbjct: 306 RLDVVRLQLPPLRERRTDVPQLAENFLAMAARKLDTPPKRLSPAALAVLRGYAWPGNVRE 365 Query: 361 LENAVERAVVLLTGEYISERELPLAI--------------ASTPIPLGQSQDIQPLVE-- 404 LEN R L E I ++ A+ T + Q + E Sbjct: 366 LENVCWRLAALAPAEVIDAHDVDSALLRGGRRERSGDGGEWETQLSAWAQQRLSDGAEGL 425 Query: 405 -------VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +K ++ AL T G + EAA +LG+ R T+ KL Sbjct: 426 HAEARERFDKALLEVALRFTHGRRAEAAARLGVGRNTVTRKLG 468 >UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NQN0_9DELT Length = 480 Score = 323 bits (829), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 187/453 (41%), Positives = 269/453 (59%), Gaps = 21/453 (4%) Query: 3 HDNIDILVVDDDISHCTILQALL-RGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 H+ +LVVDDD T+L LL R + V SG AL + D++ D+RM Sbjct: 10 HEKPLVLVVDDDAEMLTMLVRLLNRKFDCRVETVASGEAALACLDRNRPDVITTDLRMPG 69 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG++ L ++K +P I V++MT Y ++E AV +L+ GA D++ KP D + + +LE+ L Sbjct: 70 LDGMSLLTQVKEHHPEIAVIVMTGYGNIELAVRSLREGAYDFIEKPFDQERIVHSLERCL 129 Query: 122 AHTHSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + E + + G+ G S MQ + I VA + TVLI G+SGTGKE Sbjct: 130 ERVRLLQENRYLQERLSTQEAFCGLHGCSYRMQEVFDLIRKVANTNVTVLIRGESGTGKE 189 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L +A+H S R+ KPLVT+NC AL +LESELFG+ KGAFTGA + + G F+EADG T Sbjct: 190 LAVKALHTLSRRAAKPLVTVNCPALPAEILESELFGYVKGAFTGAAQDKSGYFLEADGST 249 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 L LDEIGD+ +Q +LLR +QE+EV +G + +VDVR++A+T++DL A++ G FR+ Sbjct: 250 LLLDEIGDMPLTLQTKLLRVLQEKEVTPLGQTKGRAVDVRVVASTNQDLEAKIAQGLFRE 309 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL YRLNVV I +PSL +R EDIPLLA HFLQ++A K F P L+ W G Sbjct: 310 DLLYRLNVVTITIPSLAERPEDIPLLARHFLQKYAAEYNKGDLTFAPATEQELLRRRWKG 369 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIAS--------------TPIPLGQSQDIQPL 402 NIREL+N V+R V+L +G I+ +L AS T +P +++ + L Sbjct: 370 NIRELQNTVKRVVLLTSGPQITPADLAEGGASPEEPPTGAEPMPTLTRLPYNEAKR-EVL 428 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTL 435 +E + AA+ ++GGN T AA+ G+ R+ Sbjct: 429 TSFSREYLTAAMHQSGGNVTAAAQSSGLGRQAF 461 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 323 bits (829), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 175/461 (37%), Positives = 273/461 (59%), Gaps = 31/461 (6%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ++ ++DD+ S TI + L +NV +S +AL + DL++ D++M M G+ Sbjct: 5 NVWIIDDEESIRTICTSALEDL-FNVESFSSASEALLALNSTTPDLIITDIKMPGMSGLE 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L ++ P +P +I+TA+++++ A+ A K GA +YL KP D + ++ KA + Sbjct: 64 FLDKVSEKFPNLPTIIITAHANIDNALSAYKGGAFEYLTKPFDINEIRKLAIKATKSSKP 123 Query: 127 IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 E + SQ +VGK+ +MQ + I ++ ++ TVLI G+SGTGKEL+A+++H +S Sbjct: 124 QHDELTQESNSQ--IVGKAESMQEVFKAIGKISKTDITVLIRGESGTGKELIAQSVHENS 181 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 +RS +P + +N AA+ LLESELFGHEKG+FTGA +R GRF +A GGTLFLDEIGD+ Sbjct: 182 SRSNQPFIAINVAAIPHELLESELFGHEKGSFTGAQSQRIGRFEQALGGTLFLDEIGDMH 241 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 P +Q RLLR + E RVG + I DVR+IAAT++++ + G+FR+DLY+RLNV Sbjct: 242 PELQTRLLRVLSSHEFYRVGGQKPIKSDVRIIAATNQNIEGLIKVGKFREDLYHRLNVFR 301 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 IE+P LR+R+EDIP L +FL++ A+ + +K AM++L YDWPGNIR+LEN Sbjct: 302 IELPPLRKRKEDIPSLVKYFLKKSADEIKSDLKDIEDPAMEVLNEYDWPGNIRQLENTCR 361 Query: 367 RAVVLLTGEYISERELPLAIASTPIPLGQS------------------------QDIQPL 402 V+ I+ ++P + + + LG QD+ L Sbjct: 362 YITVMAPSTSITLDDIPDEVKNVDMSLGDPNHFNGLGSNGNWEESLSNHIRSVLQDMNDL 421 Query: 403 V----EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 ++EK ++ AL+ + G + +AA+ LGI R T+ K+ Sbjct: 422 TNLSKDLEKILLQEALKASKGRRIDAAKILGIGRNTITRKI 462 >UniRef50_A5W971 Two-component response regulator CbrB n=10 Tax=Proteobacteria RepID=A5W971_PSEP1 Length = 480 Score = 323 bits (828), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 192/471 (40%), Positives = 275/471 (58%), Gaps = 44/471 (9%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+D+ + L+ LL Y V+ A S ++A E+ FDL++ D+R+ G Sbjct: 4 ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIATFDLIVSDLRLPGAPGTEL 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL------ 121 +K L PVLIMT+Y+S+ +AV+++K GA+DY+ KP D D + + + L Sbjct: 64 IK----LGQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQNA 119 Query: 122 -------------AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIH 168 + D + A + G++G MQ + S+I VAP+++ VLI Sbjct: 120 PAAAPPAEPRASNGKATASDKGSAATANGEIGIIGSCQPMQDMYSKIRKVAPTDSNVLIQ 179 Query: 169 GDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGR 228 G+SGTGKELVARA+H S R++ P++++NCAA+ E+L+ESELFGHEKGAFTGA R G Sbjct: 180 GESGTGKELVARALHNLSRRAKAPMISVNCAAIPETLIESELFGHEKGAFTGASAGRAGL 239 Query: 229 FVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAE 288 ADGGTLFLDEIG++ Q RLLR +QE E++RVGS Q VDVRLIAATHRDL Sbjct: 240 VEAADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKNL 299 Query: 289 VNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDL 348 AG+FR+DLYYRL+V+A+++P+LR+R D+ +A FL R + R + F+ +A Sbjct: 300 AKAGQFREDLYYRLHVIALKLPALRERGSDVNEIASVFLARQSARIGRDDLHFSAEAEQA 359 Query: 349 LIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI--------- 399 + HY WPGN+RELENAVERAV+L IS L + I + + + DI Sbjct: 360 IRHYSWPGNVRELENAVERAVILSESAEISAELLGIDIELSDL---EEDDILDNALVVAN 416 Query: 400 ------QPLVEVEKEVILAAL---EKTGGNKTEAARQLGITRKTLLAKLSR 441 +P ++ E + +TE AR+LG++RK L + R Sbjct: 417 AGNASHEPTEDLSLEDYFQHFVLEHQDHMTETELARKLGVSRKCLWERRQR 467 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 323 bits (828), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 163/300 (54%), Positives = 215/300 (71%), Gaps = 3/300 (1%) Query: 141 MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAA 200 +VG+SPAM+ + +A V ++ATVLI G+SGTGKEL+ARAIH +S R +KP V + C + Sbjct: 192 IVGQSPAMREVFDTMARVLDTDATVLIEGESGTGKELIARAIHYNSERKDKPFVVVFCGS 251 Query: 201 LNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQER 260 L + LLESELFG++KGAFTGA ++G F ADGGT+FLDE+GD+SP MQ LLR +QE Sbjct: 252 LPDELLESELFGYKKGAFTGALSDKKGLFEVADGGTVFLDEVGDLSPRMQTALLRVLQEG 311 Query: 261 EVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIP 320 E++RVG Q+ VDVR+I+AT++ L V G+FR+DLYYRLN + I VP LR RR DIP Sbjct: 312 EIRRVGDTQVRKVDVRVISATNKPLRELVQQGKFREDLYYRLNTIQITVPPLRHRRGDIP 371 Query: 321 LLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISER 380 LLA HFL ++A + R +KGFTP+A++LL Y WPGN+RELEN +ERAVVL GE I+ Sbjct: 372 LLAHHFLDKYAVKKRAHIKGFTPEALELLERYHWPGNVRELENTIERAVVLARGELITPE 431 Query: 381 ELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +L L P D+ PL EVE+ V+L L++ GGN +E AR LG++R+ L KL Sbjct: 432 DLRLPDTDGADPF--EPDL-PLKEVERRVVLRTLKRHGGNISETARVLGVSRRWLHYKLK 488 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 323 bits (828), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 191/442 (43%), Positives = 277/442 (62%), Gaps = 16/442 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +LVVDD+ L L G+ V A S + E++ FDLV+ D+ + GI Sbjct: 14 SVLVVDDEQGMRNFLSRALALRGFVVDTAESAEEGAEKLAATRFDLVILDIALPGKAGIE 73 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA-----L 121 L+++ A A V+++TA++ ++TA++AL+ GA D+++KP D + ++ ++ L Sbjct: 74 WLQDLTAAGFAGEVILITAFADMQTAIDALRAGAADFILKPFRIDQILNSIHRSTERARL 133 Query: 122 AHTHSIDAETPAVTASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 A + + A + S GM+G SPA+ L + +AP+ +TVLI G+SG GKE+VAR Sbjct: 134 ARENFLLRRQVAGSGSASDGMIGASPAIGQLRQILHRIAPTPSTVLIQGESGVGKEVVAR 193 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H S R+E+P V +NCAA++ L+ESELFGH KGAFTGA + R G F A GGTLFLD Sbjct: 194 ALHQLSPRAEQPFVAVNCAAISAELIESELFGHVKGAFTGAREARNGLFHYAHGGTLFLD 253 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++ +Q RLLR ++ER+V+ VG+ Q + VDVR++AAT+RDL AEV A RFR+DL+Y Sbjct: 254 EIGELPLALQSRLLRVLEERKVRPVGTEQEVPVDVRVLAATNRDLRAEVAACRFREDLFY 313 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL V+ + VP LR+R ED+P LA F+Q+ A + +P+ L+ + WPGN+RE Sbjct: 314 RLEVITLTVPPLRERAEDVPALAAAFMQQLAMQLGLPPLLISPEVSARLMAHPWPGNVRE 373 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV--EVEKEVILAALEKTG 418 L N VER+ LL G++ PLA + + PL+ EVEK ILA L++ G Sbjct: 374 LRNFVERS--LLFGDF------PLASLAGAVAPPPPASAAPLLLEEVEKRHILAVLDQCG 425 Query: 419 GNKTEAARQLGITRKTLLAKLS 440 GNKT AA LG++RKTL K + Sbjct: 426 GNKTRAAELLGVSRKTLERKCA 447 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 323 bits (827), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 175/442 (39%), Positives = 271/442 (61%), Gaps = 8/442 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +++ +DD ++ +L G V S +++L+ + +V+ D+RM +DG+ Sbjct: 7 VVITEDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMPRIDGMKV 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L + NP V++MT +++VE+AV++LK GA DY+ KP + L+ T+E+AL+H + Sbjct: 67 LDFARQKNPLTQVILMTGHATVESAVQSLKAGAFDYICKPFENVELRHTVERALSHWNLS 126 Query: 128 DA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 E V A ++G+S AM + I A + +VLI G+SGTGKELVAR I Sbjct: 127 RENMRLREENKVFAEGDVIIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGKELVARQI 186 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R + V +NCAA+ E ++ESELFG++KGAFTGA++ + G F A+GGT+FLDE+ Sbjct: 187 HLKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERAKPGLFETANGGTIFLDEV 246 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 + S +Q +LLR +Q+ R+G + V+VR++AAT+RD+ + FR+DLYYRL Sbjct: 247 NNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQETFREDLYYRL 306 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 V+ I +P+LR RR+D+PLLA +F+ ++A+R K V G + Q + L+ +DWPGN+RELE Sbjct: 307 RVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMSTQVLGALMRHDWPGNVRELE 366 Query: 363 NAVERAVVLLTGEYISERELPLAIA-STPIPLGQSQDIQP--LVEVEKEVILAALEKTGG 419 N ++RA++L G+ I E LP I+ T + + +QP L EVE I L +T G Sbjct: 367 NVIQRALILCQGKVIDEGVLPPEISRGTELSVRAIDHMQPQTLEEVEVYFIRKTLRETNG 426 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 ++ A LGI + TL K+ R Sbjct: 427 DRALCAEILGIDKSTLWRKIKR 448 >UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulator MrpB n=3 Tax=Cystobacterineae RepID=Q1D245_MYXXD Length = 488 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 192/465 (41%), Positives = 270/465 (58%), Gaps = 31/465 (6%) Query: 8 ILVVDDDISHCTILQALLRGWG------YNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 +L+VDDD+S L+ Y VA A S L +E + +V+ D+ + + Sbjct: 4 LLIVDDDVSLLETLKMHFEEIEQDGQPRYQVATATSAAAGLRAAQEAMPSVVILDMMLPD 63 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPL-DFDNLQATLEKA 120 G+ ++E+K L ++++TAY +ET + A+K GA DY+ KP D L +E+A Sbjct: 64 RTGLEIIEEMKGLCGDARIILVTAYHDMETTIRAMKAGAFDYIHKPFPDPAALDLVVERA 123 Query: 121 LAH---THSIDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 L + + D A++ G +VG SP MQ L+ EI V S ATVLI G+SGTGKE Sbjct: 124 LEYRQLSRRADEVHRENAAARLGDIVGTSPLMQQLVKEIGKVTGSHATVLITGESGTGKE 183 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+AR IH S +P + +NC+A+ ++LLESELFGHEKGAFTGA + G+F A+ GT Sbjct: 184 LIARVIHNYSYDEPRPFIGINCSAIVDTLLESELFGHEKGAFTGATAGKPGKFELAEDGT 243 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIGD+S M+Q +LLR +QERE +RVG + I + R+IAATHR L EV AGRFR+ Sbjct: 244 VFLDEIGDMSLMLQAKLLRVLQEREFERVGGVKRIKLRARVIAATHRALVEEVEAGRFRE 303 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLY RL V+ +++P LR+RREDIP L H L+R E+ K V + M+ L W G Sbjct: 304 DLYQRLKVITLQIPPLRERREDIPPLVKHLLERINEKVHKRVTRVPGEVMERLTRLPWRG 363 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIP----------------LGQSQD-- 398 N+RELEN + RAVVL G+ + +LP + P P ++D Sbjct: 364 NVRELENVLTRAVVLAPGDVLRGDDLPALESPLPSPEPGRATSAHHTASAMFAAPAEDDA 423 Query: 399 --IQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I L E E+++I A+ T G+K + LGI+R TL KL + Sbjct: 424 SLIPTLEEAERQLIARAMTVTKGHKGRTCQILGISRPTLERKLQK 468 >UniRef50_Q1IMW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMW7_ACIBL Length = 463 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 193/450 (42%), Positives = 271/450 (60%), Gaps = 16/450 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+ DD+ + L GY + LA SG QA+E + + D+ L DV + +DG+ Sbjct: 5 ILICDDEALTLKTISRALEAEGYEIFLAQSGEQAVEIAQREHPDIALLDVVLPGIDGVEV 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA---LA-H 123 L+++K L+ +I V++M+AY VE AVEALK GA DYL KP ++ T+ +A LA Sbjct: 65 LRQLKRLDSSIVVVMMSAYRVVERAVEALKLGAYDYLTKPFHVSDMVNTIGRASEVLALR 124 Query: 124 THSIDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSE-ATVLIHGDSGTGKELVARA 181 D+ A FG +V ++ A+ +L + A S+ T+LI G+SGTGKE++A+ Sbjct: 125 VRVRDSVQDARGRYDFGRVVTRNAALAAMLEQAKKAAESDKTTILIQGESGTGKEVMAKT 184 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R+++PLV+LNCAAL ++LLESELFG+E GA+T A +R+EG +A GTLFLDE Sbjct: 185 IHYYSPRAQQPLVSLNCAALPDTLLESELFGYEPGAYTDARRRKEGLLEKAHAGTLFLDE 244 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++S +Q +LLR ++E R+G + I VDVR+IAAT++ L V+ G FR DL+YR Sbjct: 245 IGNMSFSVQAKLLRVLEEGNFMRLGGTRTIQVDVRIIAATNKVLKDAVSRGEFRDDLFYR 304 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV+ + +P LR+R+ED +A ++RF + +K G TP+A + L Y WPGNIREL Sbjct: 305 LNVMPLFIPPLRERKEDTVPIALDMMKRFNKDLKKNFTGMTPEAAECLRAYTWPGNIREL 364 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD-------IQPLV---EVEKEVIL 411 N +ER ++L T IS +LP I P S P V E+E IL Sbjct: 365 RNVMERTMILATHGDISLDDLPHEIREFDAPPETSSGEVEISSLTTPFVTLEELEDRYIL 424 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L TG NKT AAR LGI +L KL R Sbjct: 425 EVLTATGNNKTHAARILGIHPTSLARKLKR 454 >UniRef50_Q7USH9 Nitrogen assimilation regulatory protein n=1 Tax=Rhodopirellula baltica RepID=Q7USH9_RHOBA Length = 514 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 187/473 (39%), Positives = 284/473 (60%), Gaps = 41/473 (8%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ++LV+DDD + + + L +V++A + L +RE FD VL D+++ + +G+A Sbjct: 30 NLLVIDDDRTILALAEKALAPIA-DVSVAANAADGLGLLREGEFDAVLLDIQLPDQNGLA 88 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 EI+ + IPV+ MT ++ TA+EA++ GA DY+ KPL+ ++L+ +EKA+ Sbjct: 89 VYCEIREHDRRIPVIFMTVEAASNTAIEAMQLGAFDYIAKPLNVESLRDLVEKAIEQ-RQ 147 Query: 127 IDAETPAVTASQFG-------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 I + A++A G +G+SP M + + VA + +L+ G+SGTGKELVA Sbjct: 148 ISSVPVAISADDEGGDQSAELFIGRSPVMLDVFKAVGKVAKQDVPILVRGESGTGKELVA 207 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RA+ S RS++ + +NCAAL ++LLESELFGHEKGAFTGA+ RR G+F + +GGTLFL Sbjct: 208 RALFQYSHRSDETFLAVNCAALPDNLLESELFGHEKGAFTGAESRRIGKFEQCNGGTLFL 267 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD++P +Q ++LR +QE+ +RVG N+ ++ +VR+IAAT+R L V G +R+DL Sbjct: 268 DEIGDMAPTVQAKVLRVLQEQRFERVGGNKELTTNVRIIAATNRPLEQMVVDGDYREDLL 327 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFL-QRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YRLN V IE+P LR R D+P L FL Q E N+ ++G +P+A+DLL YDWPGN+ Sbjct: 328 YRLNGVTIELPPLRDRLSDVPALIRFFLAQAKIEFNKPDLEGLSPEAVDLLTVYDWPGNV 387 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD------------------IQ 400 R+L + R V+ I+ LP AIA T +S+ +Q Sbjct: 388 RQLRAVIRRCVLDTVMPVITPDTLPDAIAGTRNSGAKSESGTNEKLESEAPGSQLPQLVQ 447 Query: 401 PLVE-------------VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L++ +E+ VIL L+ T GN+++AA LGITR L +++ Sbjct: 448 RLLKEKSTNVYGEAMEYMERFVILQVLQSTDGNQSQAAEILGITRGKLRDRIN 500 >UniRef50_C6W7H2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7H2_DYAFD Length = 457 Score = 322 bits (826), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 181/453 (39%), Positives = 274/453 (60%), Gaps = 22/453 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQV----REQVFDLVLCDVRMAEMD 63 +L+V+DD + +L L G+ V S R+A E + + F++++ D R+ + + Sbjct: 4 LLLVEDDSTFSKLLTNFLGKHGHQVKACTSIREARETLGKGSSDGPFEVLMLDYRLPDGN 63 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL-- 121 + LK +++ P IMT++ V TAV A++ GA DY+ KP++ + L L +AL Sbjct: 64 SVDFLKTLRSEGNRTPAFIMTSFHDVRTAVTAMQIGAFDYITKPVNPEELLMVLREALNK 123 Query: 122 AHTHSIDAETPAVTASQFG------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 S+ A + +Q G + GKS + L + LVAP++ +V+I G+SGTGK Sbjct: 124 GEVTSVKTAPKAKSNAQSGKQSLDYIEGKSKVAKQLFEYVRLVAPTDMSVIIQGESGTGK 183 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E VA++IH S R++ P V ++C +L++ L SELFGH+KGAFTGA + + G+F ADGG Sbjct: 184 EHVAKSIHRLSKRADGPFVAIDCGSLSKDLAASELFGHKKGAFTGALQDKIGQFEAADGG 243 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++S +Q++LLRA+QER + +GS Q + VDVRLIAAT+ DL A G FR Sbjct: 244 TLFLDEIGNLSYDVQIKLLRALQERIIVPIGSTQQVKVDVRLIAATNEDLIANAATGDFR 303 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLY+RLN IEVP+LR+R ED+P+ HF+ + E + V+ + + MD+ YDWP Sbjct: 304 EDLYHRLNEFKIEVPALRKRGEDLPIFVQHFVDKANEELERNVRELSKEVMDVFQKYDWP 363 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIAST------PIPLGQSQDIQPLVEV-EKE 408 GN+REL N ++R V+L E + LP + + P P D++ L E EKE Sbjct: 364 GNLRELNNVIKRLVLLSKEEVATLSALPSEMITAMEDQQKPAP---GSDLKALQETHEKE 420 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +I L++ NK++AA+ L I RKTL K+ + Sbjct: 421 MIEKVLQEVRYNKSKAAKLLNIDRKTLYYKIEK 453 >UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUI1_9GAMM Length = 466 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 187/447 (41%), Positives = 268/447 (59%), Gaps = 16/447 (3%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 D I ++DDD +L L G+ V ++ QA++ + ++ DLV+ D+RM EMD Sbjct: 9 DPGHICIIDDDADFLRLLGLWLESEGHKVQAFSTPVQAVKAMERELPDLVITDLRMPEMD 68 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ L+ ++ L+P +PV+++TA+ S+ AV A++ A YL KP + L++ + AL Sbjct: 69 GMEVLEAVQELDPELPVILLTAHGSIPNAVAAMRAQAFGYLGKPFSSEELESLVAAALRQ 128 Query: 124 THSIDAETPAVTASQFGMVG-----KSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + ET + A+ + G +SP M L+ E+ VA S+ +V + G+SG+GKE V Sbjct: 129 RQA-SRETSRLRATLKDLAGQMILHRSPVMAKLVDELTRVAHSQTSVFLTGESGSGKERV 187 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARAIHA+S R++ P V +NC A+ L ESELFGH KGAFTGA + G ADGGTLF Sbjct: 188 ARAIHAASPRAQGPFVAVNCGAIVADLAESELFGHVKGAFTGASQDHPGLIRAADGGTLF 247 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEI D+ +QV+LLR +QE ++ VGS + VD+R+I+ATH+D+ A +G FR+DL Sbjct: 248 LDEIADLPLSLQVKLLRVLQEGTLRPVGSREEYRVDIRVISATHQDICALTASGAFREDL 307 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYRL+V+ + VPSL +R EDI LLA HFL R R R+ ++GF+P+A+D LI WPGN+ Sbjct: 308 YYRLHVIPLRVPSLAERPEDILLLAQHFLDREIARLRRPIQGFSPEALDKLICRPWPGNV 367 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE----VEKEVILAAL 414 RELENAV A L +++ +P P G PL + E+ + L Sbjct: 368 RELENAVTLAAALTEKGWVAAETIP-----DPSRAGGRSAFPPLQDAKAAFERGYLENLL 422 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 T GN + AAR G R T L KL R Sbjct: 423 RATDGNISRAARIAGRHR-TDLYKLMR 448 >UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulator n=6 Tax=Bacteria RepID=Q1CWG7_MYXXD Length = 477 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 272/447 (60%), Gaps = 18/447 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE-----M 62 +LV DD L+ LL+ G V + S AL + + DLVL D+ A Sbjct: 25 VLVADDQADVLEALRLLLKRDGLTVVTSQSPAGALATLEAEDVDLVLMDLNYARDTTSGQ 84 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE---- 118 +GI L I+A + ++PV++MTA+ SVE AVEA++ GA DY+ KP D L ATL Sbjct: 85 EGIDLLGRIRAQDASLPVVVMTAWGSVEGAVEAMRAGARDYVQKPWDNTRLLATLRTQLE 144 Query: 119 --KALAHTHSIDAETPAV---TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGT 173 +AL + ++ E + +Q MV +S +MQ + I VAPS A VL+ G+ GT Sbjct: 145 LRRALKRSRRLEEENQHLRRGQGNQLAMVSESRSMQPVRRLIERVAPSGANVLVTGEHGT 204 Query: 174 GKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD 233 GKE+VAR IH S RSE+ V +N L+E + ESELFGH KGAFT A R G F AD Sbjct: 205 GKEVVARLIHGGSTRSERAFVAVNSGGLSEGVFESELFGHVKGAFTDAKSDRIGCFELAD 264 Query: 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR 293 GGTLFLDEIG++ Q +LLR +Q E+ VGS++ VDVR+++AT+ DL+ V GR Sbjct: 265 GGTLFLDEIGNMPLSQQAKLLRVLQTGELHPVGSSKTRRVDVRVVSATNVDLSRAVAEGR 324 Query: 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 FR+DL YRLN V +++P LR+RREDIPLLA HFL R + + +A++ L+ Y Sbjct: 325 FREDLLYRLNTVEVQLPPLRERREDIPLLAAHFLAEQGRRYGRPNVRLSSEALEALLAYA 384 Query: 354 WPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ-DIQPLVEVEKEVILA 412 WPGN+RELE+AVERA+++ +G+ +++ +L L A G ++ + L EVE+ +I Sbjct: 385 WPGNVRELEHAVERAMLMASGDEVTQEDLLLKRAGRE---GMARLEEMTLEEVERYLIER 441 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKL 439 AL + GN +EAA+ LG++R L +L Sbjct: 442 ALARHEGNVSEAAKGLGLSRSALYRRL 468 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 187/440 (42%), Positives = 267/440 (60%), Gaps = 12/440 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +IL+VDD+ + L R G+ + ++ +ALE + + FDL+L DV M DG+ Sbjct: 6 EILIVDDEANTLASLSRAFRLAGHEATVCDNAVRALEIAKSKPFDLILSDVVMPGRDGLT 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA---- 122 L+++K PV++M+ + +E AV+A + GALD+L KPL D L T+E AL Sbjct: 66 LLEDLKTAGVQAPVVMMSGQAHIEMAVKATRLGALDFLEKPLSTDKLLLTVENALKLKRL 125 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 T + D + + +V K AM+ ++++I VA SEA V I+G++GTGKEL AR + Sbjct: 126 ETENRDLRS---RVGKHEIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELAARTL 182 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R P +TLNCAA+ L+ESELFGHEKG+FTGA +R G+F +A GTLFLDEI Sbjct: 183 HEKSPRKAGPFITLNCAAVPAELIESELFGHEKGSFTGAAQRHIGKFEQAHRGTLFLDEI 242 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+ MQ +LLR ++E EV+RVG ++ I VDVR+I ATHR+L V G+FRQDL++R+ Sbjct: 243 GDMPLAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKFRQDLFHRV 302 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 V + +P LR RREDIP+L HF + +N FT +A++ L Y WPGN+RE+ Sbjct: 303 YVFPLILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVPFTAEAVEALQRYSWPGNVREMR 362 Query: 363 NAVERAVVL-LTGEY---ISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTG 418 N VER ++L + GE E LP A +T G + + E+EVILA L++ Sbjct: 363 NVVERLLLLAVAGEVDRATVELALPEAQTATS-DTGSGPLSSRVAQYEREVILAELQRQK 421 Query: 419 GNKTEAARQLGITRKTLLAK 438 + T A+ LG+ R L K Sbjct: 422 HHITNTAKALGLERSHLYKK 441 >UniRef50_A3EPR9 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=A3EPR9_9BACT Length = 489 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 189/461 (40%), Positives = 283/461 (61%), Gaps = 24/461 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ-VFDLVLCDVRM 59 M+ D ++LVVDD+ L+ L G++V A +G++AL + +++ + V+ D+RM Sbjct: 1 MSPDESNVLVVDDEREMGLALRESLSRDGFHVDWAKNGQEALTRFKQEGPYQWVISDLRM 60 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 E DG + L+ ++ ++PA V++MTA+ +V AV+A++ GA+D+++KP + L+ L Sbjct: 61 PEGDGWSLLESLRQISPATRVILMTAFGTVPQAVDAMRMGAVDFVMKPFSPEELRKKL-T 119 Query: 120 ALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 A A + DA P A ++ + P + +L + VA + AT+LI G+SGTGKEL+A Sbjct: 120 ASAGRRTPDAGRPVWEAVSRPILTRDPGLIGVLKMLDGVARTPATILIEGESGTGKELLA 179 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 R +H S R +P V +NCAAL ESLLESELFG+EKGAF+GA R+ G+F A GTL L Sbjct: 180 RYVHERSPRVHRPFVAVNCAALPESLLESELFGYEKGAFSGALARKIGKFELAHTGTLLL 239 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++ +Q +LLR IQEREV RVG + VD+R++A T+R++ V G+FR+DLY Sbjct: 240 DEIGEMDLALQAKLLRVIQEREVDRVGGASPVPVDIRIVATTNRNMKEMVKTGQFREDLY 299 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL V + VP+LRQR DI LLA HF ++F + + V T +A++ L +PGN+R Sbjct: 300 YRLRVFPVRVPALRQRPADIVLLANHFREKFRLEHME-VGELTAEAVECLRSASFPGNVR 358 Query: 360 ELENAVERAVVLLTGEYISERELPLAIA-----------STPIPLGQSQD---------I 399 ELEN + +A L G +I L L++ STP ++ D Sbjct: 359 ELENVIIQAAFLAGGGHIGPEHL-LSLGGEETNGLSSAFSTPPKEQKTGDGFSPNGVRPG 417 Query: 400 QPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 Q + EVE+E+I LE G N+T+AA+ LGI+ +TL KL+ Sbjct: 418 QSVWEVERELIRVTLEACGQNRTQAAKMLGISVRTLRNKLN 458 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 173/435 (39%), Positives = 264/435 (60%), Gaps = 23/435 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L++DD+ L+ + G++ Q L + F L++ DV+M +MDG+ Sbjct: 4 VLIIDDEPDMGFALKEGMSRLGFDAHYYRDPSQLLSNINFSDFSLIITDVKMPKMDGLQL 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+EI+ PV+++T Y +VE AV A+K GA+DY++KP + L++ + + + I Sbjct: 64 LEEIRKRGIFTPVIVITGYGNVEDAVRAMKLGAVDYIMKPFSMETLKSLVSRLIPEQDEI 123 Query: 128 DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSA 187 AE S M+ +L + +A ++ TVL+ G+SG GKE++AR IH S Sbjct: 124 VAE--------------SREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIHKHSP 169 Query: 188 RSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP 247 RS +P V +NCAA+ E+LLE+ELFGHEKGAFTGA +R+ G+F A+ GT+ LDEI +++ Sbjct: 170 RSNQPFVAINCAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEISEMAY 229 Query: 248 MMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAI 307 +Q +LLR IQE+E+ RVG + I +DVR+IA T++DLA EV G FR+DL+YR+NV I Sbjct: 230 RLQAKLLRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFPI 289 Query: 308 EVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVER 367 +P LR+R +DI LA FL+R + + K T L+ W GN+RELEN + R Sbjct: 290 RIPPLRERSDDIIPLAEFFLKRLSNKMSKNFT-ITEDMKKFLLKKSWQGNVRELENFIYR 348 Query: 368 AVVLLTGEYIS--ERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAA 425 + VL + E E+ L P+ G+ +D E+E+I+ AL+KT GN+T+AA Sbjct: 349 SAVLSQDGILRLHEDEINLFEEEKPVKAGKLKD------AERELIVDALKKTEGNRTKAA 402 Query: 426 RQLGITRKTLLAKLS 440 + LGI+ +TL K++ Sbjct: 403 KILGISVRTLRNKIN 417 >UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfohalobiaceae RepID=C0GVH4_9DELT Length = 470 Score = 322 bits (824), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 188/456 (41%), Positives = 270/456 (59%), Gaps = 23/456 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALA--NSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 ++++DD+ L +L N+ + +S LE ++ Q D++L D+RM EMDG+ Sbjct: 6 LMIIDDEKDMLQGLSRILPQELENIQVETFSSALSGLESIKRQPVDVLLLDIRMPEMDGM 65 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT- 124 L +K ++P I V+++TAY S+ETAVEA+K GA D++ KP + +L L KAL + Sbjct: 66 EVLTAVKEIDPWITVVMITAYGSIETAVEAIKKGAYDFITKPFEIPDLVRVLNKALERSL 125 Query: 125 ---HSIDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 +++ F VG+SP M+ L I +A ++ TVLI G+SGTGKELVAR Sbjct: 126 LIRENMNLRKKVSEKEPFADFVGQSPPMRRLYDGIQALAGTDYTVLIRGESGTGKELVAR 185 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H S RS + +VT+NC A+ E LLESELFGH+KGAFTGA++ G F+EAD TL LD Sbjct: 186 ALHELSPRSSRRMVTVNCPAIPEHLLESELFGHKKGAFTGAEQNHTGMFLEADKSTLLLD 245 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ +Q +LLR +QEREV+ +GS++ VDVR+++ T++DL A + FR+DLYY Sbjct: 246 EIGDLPVSIQTKLLRVLQEREVRPLGSDKSRKVDVRILSCTNQDLEARIQDRSFREDLYY 305 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV + PSL + EDIPLLA HFL+ +K F+ A+ ++H WPGN+RE Sbjct: 306 RLNVVTLRTPSLSEITEDIPLLADHFLRSVCNELGLPLKRFSVAAIQSMMHKSWPGNVRE 365 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD-------IQP--------LVEV 405 L+N V R + E I ++ +A S QD ++P L Sbjct: 366 LQNFVRRVALFSPEEEIGAADIRVAQDSLYGSAESRQDQDSNGKAVKPYQQAKEELLENF 425 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +E I L +T GN T A+ GI+R T L K+ R Sbjct: 426 TREYITRLLGQTEGNVTRASDIAGISR-TALQKIMR 460 >UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulator n=12 Tax=Proteobacteria RepID=Q0VSC9_ALCBS Length = 464 Score = 321 bits (823), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 180/455 (39%), Positives = 271/455 (59%), Gaps = 19/455 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + +LVVDD+ +L L A+S A ++++E +DL L D+ + Sbjct: 1 MSAEAPHVLVVDDEADLRELLVITLGRMKLQATAADSLSTAKQRLKEAHYDLCLTDMNLG 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ L+ I P +P ++TAY S++TA +A+K GA D++ KP+ D L+ +E Sbjct: 61 DGTGLELLQFISQYCPTMPTAVITAYGSMKTATDAMKYGAYDFIAKPVALDRLRQLIEDG 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 L I+ ++G +P+M L S++ +A S+A + I G+SG+GKE +AR Sbjct: 121 LG----INEVEEHHEEED-NLIGDAPSMVALKSQVRKLARSQAPIYISGESGSGKERIAR 175 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH R EKP V +NC A+ L+ESE FGH KGAFTGA + R+G F EADGGTLFLD Sbjct: 176 LIHTLGPRREKPFVAVNCGAIPSELMESEFFGHRKGAFTGAVEDRKGLFREADGGTLFLD 235 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ D+ MQV+LLRAIQE+ V+ VG + V++R++ ATH++L E+ GRFRQDL+Y Sbjct: 236 EVADLPLHMQVKLLRAIQEKSVRPVGEAKEFQVNLRILCATHKNLEDEMEEGRFRQDLFY 295 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ VP LR+RREDIP L H L R ++ + A++ + +Y +PGN+RE Sbjct: 296 RLNVIEAHVPPLRERREDIPKLVRHILDRLSQAWEIPPPSVSSDAVNAIGNYAFPGNVRE 355 Query: 361 LENAVERAVVLLTGEYISERELPL------------AIASTPIPLGQSQDI--QPLVEVE 406 LEN +ERA+ L G I L L + +++P P+ S+ + L E+E Sbjct: 356 LENTLERALTLCDGNTILPEHLRLPSNRSGLASNRSSTSTSPPPIRPSEQSLEEFLQEIE 415 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 K+ IL AL+ T N+T AA++LG+T ++L +L + Sbjct: 416 KQEILKALDTTHWNRTAAAKKLGMTFRSLRYRLKK 450 >UniRef50_Q2IK30 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Anaeromyxobacter RepID=Q2IK30_ANADE Length = 466 Score = 321 bits (823), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 189/446 (42%), Positives = 261/446 (58%), Gaps = 14/446 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L+VDD+ S L+ L++G G+ LA S +ALEQ+ D+++ D M EMDG+A Sbjct: 4 VLLVDDEPSVRAALKELVQGRGWEPVLACSASEALEQLERA--DVLVTDFSMPEMDGLAL 61 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ ++ + +PV+++TA+ S AV A+K GA +Y+ KP D D L + +AL Sbjct: 62 LQAVRERDEWLPVILLTAHGSERLAVRAMKAGAYEYVPKPFDVDELALAIGRALEARLLR 121 Query: 128 DAETPAVTASQFG--MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 G +V +S M+ +L+ A VA E TVL+ G++GTGKEL+ +HA Sbjct: 122 QRNRQLTVEHAIGRRLVFESANMRQVLAATARVAAREITVLVRGETGTGKELIGTLLHAL 181 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S R+ PLV NC+A+ L E+ELFGH +GAFTGA + R G F +ADGGTL LDE+G++ Sbjct: 182 SKRAAGPLVRFNCSAIPAELAEAELFGHVRGAFTGAVQARPGFFAQADGGTLVLDEVGEL 241 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 +Q +LLR +QE E+Q VGS ++ VDVR++A THRDL A+V GRFR+DLYYRL VV Sbjct: 242 PLGIQAKLLRTLQEGEIQPVGSGRVERVDVRIVACTHRDLRADVQEGRFREDLYYRLAVV 301 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 + VP LR RREDIP LA F R+AER P ++ L+ DWPGN+R+LEN V Sbjct: 302 ELTVPPLRDRREDIPALAHEFALRYAERFGSEDVRLAPALVERLVKADWPGNVRQLENVV 361 Query: 366 ERAVVLLTGEYISERELPLAIASTPIPL----------GQSQDIQPLVEVEKEVILAALE 415 R V L G I A G L E+E+ VI + Sbjct: 362 ARMVALSGGGEIGPDAFEATGAPAGGAGRPAAPPSEGEGTRTLRAQLDELERAVIARTMV 421 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 GN++EAAR+LGI+R TL +L R Sbjct: 422 AVRGNQSEAARRLGISRNTLTERLRR 447 >UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPF3_9BACT Length = 451 Score = 321 bits (823), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 176/444 (39%), Positives = 260/444 (58%), Gaps = 12/444 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +IL++DD+ S CT +Q +L GY A + +++++ FD++ D+ + + DGI Sbjct: 3 NILIIDDEKSICTTIQGILEDEGYTADYALTFCDGFKKLKDGSFDILFLDIWLPDRDGID 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LKEIK P + V+I++ + ++E AVEA++ GA D+L KPL + + + K L Sbjct: 63 GLKEIKKYFPELEVVIISGHGNIENAVEAIRVGAYDFLEKPLSLERILLIV-KHLQDKFQ 121 Query: 127 IDA---ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + E+ ++ ++G S + L +I +AP+ A V+I G++GTGKE VAR IH Sbjct: 122 LMRDLRESRGDQLKKYDLIGTSKPLLDLRKKIEKIAPTNAWVMITGENGTGKEHVARLIH 181 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S RS V +NCAA+ LLESE+FGHEKGAFTGA ++G+F E D GT+FLDEIG Sbjct: 182 MLSKRSRNSFVEINCAAIPSELLESEMFGHEKGAFTGAHMAKKGKFEEGDNGTVFLDEIG 241 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+ Q +LLR ++ RVG N +S D RLI AT+++L E++ G FR+DLYYR+N Sbjct: 242 DMEMSAQAKLLRVLENNTFSRVGGNASVSSDFRLITATNKELEDEISDGNFREDLYYRIN 301 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV + VP LR+R +DIPLL HF++ N +K + M L + ++WPGN+R+L+N Sbjct: 302 VVPLVVPPLRERHDDIPLLVNHFIKEACSFNGIELKKVDEELMHLFVQFEWPGNVRQLKN 361 Query: 364 AVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ---PLVE----VEKEVILAALEK 416 VER VVL +S + P I P +S D++ PL EK IL L+ Sbjct: 362 LVERMVVLSEDSVMSLDDAPDFIQGKHFP-QKSYDVEYEYPLKHAKENFEKHYILNILQN 420 Query: 417 TGGNKTEAARQLGITRKTLLAKLS 440 N + +AR L I R L K+ Sbjct: 421 NDWNISRSARILEIERTYLHRKIK 444 >UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UE04_RHOBA Length = 481 Score = 321 bits (823), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 181/476 (38%), Positives = 273/476 (57%), Gaps = 43/476 (9%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 +D +LVVDDD +Q L Y V A + + LE RE D VL D+++ + Sbjct: 2 NDCRTLLVVDDDPLILQCMQLCLPAPDYRVVTAVTAAKGLELFRETDPDAVLLDIQLPDQ 61 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+A + E + ++ +PV++MT + + ETA+ A+ GA +Y+ KP + D + ++ AL Sbjct: 62 SGLALIHEFREMDRRVPVILMTGHGTAETAITAISGGAFEYITKPFEPDGILPLIDSALE 121 Query: 123 HTHSIDAETPAVTASQFG-------------MVGKSPAMQHLLSEIALVAPSEATVLIHG 169 + A PA + G ++G PAM + I VA +A VLI G Sbjct: 122 TSRM--ARRPAELPTDSGQPLDRSKATAADLILGSCPAMVDVFRSIGRVASRDAAVLILG 179 Query: 170 DSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF 229 ++GTGKE+VARAI+ S R ++ +NCAA+ E+LLESELFGHE+G+FTGAD+RR G+F Sbjct: 180 ETGTGKEVVARAIYQHSQRHDQVFHAINCAAIPEALLESELFGHERGSFTGADQRRIGKF 239 Query: 230 VEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEV 289 +GGTLFLDEIGD++P+MQ +LLR +QE+E +RVG ++ I DVR++AAT+RDL + + Sbjct: 240 EICNGGTLFLDEIGDMTPVMQTKLLRVLQEKEFERVGGSKPIKTDVRILAATNRDLESAM 299 Query: 290 NAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLL 349 G FR DL+YRLN IE+P LR+R ED+ +A HF FA++ K P+ M L Sbjct: 300 ADGSFRSDLFYRLNEFTIELPPLRERGEDVARMAEHFFSLFADQLGKDFVSIAPETMQRL 359 Query: 350 IHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQ-------------- 395 + + WPGN+REL+ V++ ++ +G I LP + P Sbjct: 360 MAHSWPGNVRELQGIVKQTLLKASGPVIVPAFLPSGFGESSSPGNNVEISNGWESEVSKE 419 Query: 396 ------------SQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 S+DI EV++ +I ++ TG N +EA+ +LGI+R TL +++ Sbjct: 420 INRRLASGSCTVSEDIH--NEVDRILIREVMKATGNNLSEASLRLGISRPTLRSRM 473 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 710 0.0 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 708 0.0 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 700 0.0 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 671 0.0 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 669 0.0 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 668 0.0 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 665 0.0 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 663 0.0 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 662 0.0 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 658 0.0 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 657 0.0 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 656 0.0 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 653 0.0 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 652 0.0 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 651 0.0 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 650 0.0 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 649 0.0 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 649 0.0 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 648 0.0 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 646 0.0 UniRef50_Q6ARB9 Probable two-component system response regulator... 644 0.0 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 643 0.0 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 643 0.0 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 643 0.0 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 643 0.0 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 642 0.0 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 641 0.0 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 641 0.0 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 639 0.0 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 639 0.0 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 639 0.0 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 638 0.0 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 637 0.0 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 637 0.0 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 635 0.0 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 634 e-180 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 634 e-180 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 634 e-180 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 634 e-180 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 633 e-180 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 633 e-180 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 633 e-180 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 633 e-180 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 632 e-180 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 632 e-180 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 631 e-179 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 631 e-179 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 631 e-179 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 631 e-179 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 630 e-179 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 630 e-179 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 629 e-179 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 629 e-179 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 627 e-178 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 626 e-178 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 626 e-178 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 625 e-177 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 624 e-177 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 624 e-177 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 624 e-177 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 623 e-177 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 623 e-177 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 622 e-176 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 622 e-176 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 622 e-176 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 621 e-176 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 621 e-176 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 621 e-176 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 621 e-176 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 621 e-176 UniRef50_A0LM32 Two component, sigma54 specific, transcriptional... 621 e-176 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 621 e-176 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 620 e-176 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 619 e-176 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 619 e-176 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 618 e-176 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 618 e-175 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 618 e-175 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 618 e-175 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 617 e-175 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 617 e-175 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 617 e-175 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 617 e-175 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 616 e-175 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 615 e-175 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 615 e-174 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 615 e-174 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 615 e-174 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 614 e-174 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 614 e-174 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 614 e-174 UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein ... 614 e-174 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 613 e-174 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 613 e-174 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptiona... 612 e-174 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 612 e-173 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 611 e-173 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 611 e-173 UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domain... 611 e-173 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 611 e-173 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 611 e-173 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 610 e-173 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 609 e-173 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 609 e-173 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 609 e-173 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 608 e-172 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 608 e-172 UniRef50_C6BW44 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 607 e-172 UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio... 606 e-172 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 606 e-172 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 606 e-172 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 605 e-171 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 604 e-171 UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pi... 604 e-171 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_Q39U11 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 604 e-171 UniRef50_UPI00016C54BB two component, sigma54 specific, transcri... 603 e-171 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional... 602 e-171 UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional... 602 e-170 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 602 e-170 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verru... 601 e-170 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 601 e-170 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 601 e-170 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 601 e-170 UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thio... 600 e-170 UniRef50_A0LL20 Two component, sigma54 specific, transcriptional... 600 e-170 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 600 e-170 UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulato... 600 e-170 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 600 e-170 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 600 e-170 UniRef50_D2QY56 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional... 598 e-169 UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Breviba... 598 e-169 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 598 e-169 UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional... 597 e-169 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 597 e-169 UniRef50_A6KXD6 Two-component system response regulator n=40 Tax... 597 e-169 UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulato... 597 e-169 UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional... 597 e-169 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 597 e-169 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 597 e-169 UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulato... 596 e-169 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 596 e-169 UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LU... 595 e-168 UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional... 595 e-168 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 595 e-168 UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulato... 595 e-168 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-... 593 e-168 UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-... 593 e-168 UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_A3EPR9 Putative two component, sigma54 specific, transc... 592 e-168 UniRef50_C6X591 Two component, sigma54 specific, transcriptional... 592 e-168 UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional... 592 e-168 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 592 e-168 UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium auto... 592 e-168 UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria ... 592 e-167 UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator ... 591 e-167 UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 T... 591 e-167 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 591 e-167 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n... 590 e-167 UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacter... 590 e-167 UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_Q027R3 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 590 e-167 UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Se... 589 e-167 UniRef50_B3QW87 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 589 e-167 UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opit... 588 e-166 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 588 e-166 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 588 e-166 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 588 e-166 UniRef50_Q1Q480 Putative uncharacterized protein n=1 Tax=Candida... 588 e-166 UniRef50_Q7UVC1 Acetoacetate metabolism regulatory protein atoC ... 588 e-166 UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional... 588 e-166 UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional... 588 e-166 UniRef50_B9XL82 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_C7LP79 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulato... 587 e-166 UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteob... 587 e-166 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 587 e-166 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 587 e-166 UniRef50_D2R521 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobac... 586 e-166 UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/res... 585 e-166 UniRef50_C7LX78 Two component, sigma54 specific, transcriptional... 585 e-165 UniRef50_B8FZ22 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_A1VBP1 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_C4XL32 NtrC family two-component response regulator n=4... 584 e-165 UniRef50_B4CU93 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncul... 584 e-165 UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desu... 584 e-165 UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteoba... 583 e-165 UniRef50_C0QK65 Two-component sensory box histidine kinase/respo... 583 e-165 UniRef50_Q30YU4 Two component transcriptional regulator, Fis fam... 583 e-165 UniRef50_A7HD97 Two component, sigma54 specific, transcriptional... 583 e-165 UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC ... 582 e-165 UniRef50_C1A568 Putative NtrC family two-component response regu... 582 e-165 UniRef50_A4CMC3 Two component, sigma54 specific, transcriptional... 582 e-165 UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=A... 582 e-165 UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional... 582 e-165 UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=... 582 e-165 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 582 e-165 UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional... 582 e-164 UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=G... 581 e-164 UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional... 581 e-164 UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, N... 581 e-164 UniRef50_C8X529 Two component, sigma54 specific, transcriptional... 580 e-164 UniRef50_Q3A103 Two component, sigma54 specific, transcriptional... 580 e-164 UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfi... 580 e-164 Sequences not found previously or not previously below threshold: >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 389/441 (88%), Positives = 410/441 (92%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT + IDILVVDDD+SHCTILQALLRGWGYNVALA SGR+ALE+ VFDLVLCDVRMA Sbjct: 1 MTGEKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEKASGHVFDLVLCDVRMA 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGI TL+EIKALNPAIPVLIMTA+SSVETAVEALKTGALDYLIKPLDFD LQ TLEK+ Sbjct: 61 EMDGIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLEKS 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 LAH + E P+V+ASQ GMVGKSPAMQ LLSEIA+VAPS+ATVLIHGDSGTGKELVAR Sbjct: 121 LAHAQEVAGELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+HASSARS+KPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD Sbjct: 181 ALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGDISP+MQVRLLRAIQEREVQRVGSNQ +SVDVRLIAATHRDLA E +AGRFRQDLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV IE PSLRQRREDIPLLA HFLQRFA RNRKAVKGFTPQAMDLLIHY WPGNIRE Sbjct: 301 RLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIRE 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 LENA+ERAVVLLTGEYISERELPLAIA+ +PL +Q IQPLVEVEKEVILAALEKTGGN Sbjct: 361 LENAIERAVVLLTGEYISERELPLAIANQAMPLMPAQAIQPLVEVEKEVILAALEKTGGN 420 Query: 421 KTEAARQLGITRKTLLAKLSR 441 KTEAARQLGITRKTLLAKLSR Sbjct: 421 KTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 708 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 392/441 (88%), Positives = 413/441 (93%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M IDILVVDDD+SHCTILQALLRGWGYNVALA SG AL QVRE+VFDLVLCDVRMA Sbjct: 1 MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMA 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGIATLKEIKALNPAIP+LIMTA+SSVETAVEALK GALDYLIKPLDFD LQ TLEKA Sbjct: 61 EMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 LAHT AE P+ +A+QFGM+G SPAMQHLL+EIA+VAPS+ATVLIHGDSGTGKELVAR Sbjct: 121 LAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+HA SARS+KPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD Sbjct: 181 ALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGDISP+MQVRLLRAIQEREVQRVGSNQ ISVDV LIAATHRDLA EV+AGRFRQDLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVVAIE+PSLRQRREDIPLLA HFL+RFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE Sbjct: 301 RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 LENA+ERAVVLLTGEYISERELPLAIA+TPI S +IQPLV+VEKEVILAALEKTGGN Sbjct: 361 LENAIERAVVLLTGEYISERELPLAIAATPIKAENSAEIQPLVDVEKEVILAALEKTGGN 420 Query: 421 KTEAARQLGITRKTLLAKLSR 441 KTEAARQLGITRKTLLAKLSR Sbjct: 421 KTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 700 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 368/443 (83%), Positives = 399/443 (90%), Gaps = 2/443 (0%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + +DILVVDDDISHCTILQALLRGWGY VALAN+G QALE+VRE+VFDLVLCD+RMA Sbjct: 1 MSGEQVDILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMA 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGI TLKEIK NP+IPVLIMTAYSSV+TAVEALK+GALDYLIKPLDFD LQ TL +A Sbjct: 61 EMDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEA 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 LAHT ++ A+QFGMVG SPAM+ LL+ I LVAPS+ATVLIHG+SGTGKELVAR Sbjct: 121 LAHTRLSESPVTETPAAQFGMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+HASSARS +PLV LNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD Sbjct: 181 ALHASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGDISP+MQVRLLRAIQEREVQRVGSNQ +SVDVRLIAATHRDLA EV+AGRFRQDLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV I++P LR RREDIP LA +FLQR+AERNRKAV+GFTPQAMDLLIHY WPGNIRE Sbjct: 301 RLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRE 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD--IQPLVEVEKEVILAALEKTG 418 LENAVERAVVLLTGEYISERELPLAI TP+ D IQPLVEVEKE ILAALE+TG Sbjct: 361 LENAVERAVVLLTGEYISERELPLAITGTPVADAPHGDDSIQPLVEVEKEAILAALERTG 420 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 GNKTEAAR+LGITRKTLLAKLSR Sbjct: 421 GNKTEAARRLGITRKTLLAKLSR 443 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 213/444 (47%), Positives = 290/444 (65%), Gaps = 11/444 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD+ S C L+ +L GY+V A SGR+ALE+V VL D+RM EMDGI Sbjct: 5 VLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEMDGIKV 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L+ ++ +P +PV++MTAYS +T + A++ GA +Y++KP++ D L +TLEKA T + Sbjct: 65 LQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATTVTEPL 124 Query: 128 DAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 A + G ++G SPAMQ + I +A S+ TVLI G+SGTGKELVA AIH +S Sbjct: 125 VTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNS 184 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 R KP V ++C A+ E+LLESELFGHEKGAFTGA R+ G+F ADGGT+FLDEIGDIS Sbjct: 185 PRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDIS 244 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 P +Q +LLR +QE+ +RVG + VDVR+IAAT++DL V +G FR+DLYYRLNVV Sbjct: 245 PALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVE 304 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 I++P LR+R+EDI LL +F+ + K V G T D+L+ Y+WPGN+REL N E Sbjct: 305 IKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCE 364 Query: 367 RAVVLLTGEYISERELPLAI------ASTPIPLGQSQDIQPL----VEVEKEVILAALEK 416 RAV++ G I+ LP + + + + + PL E+E+ IL ALE+ Sbjct: 365 RAVLMARGNVITPESLPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRALEE 424 Query: 417 TGGNKTEAARQLGITRKTLLAKLS 440 GNKT AR LG++R TL AK+ Sbjct: 425 YRGNKTAVARALGMSRTTLYAKMK 448 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 205/447 (45%), Positives = 282/447 (63%), Gaps = 15/447 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILV+DD+ C L+ L GY V + G+ L+ +R++ LV+ D++M EMDG+ Sbjct: 6 KILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGLE 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L + K L P +P++++TA+ +++TA+EA+K GA DY+ KP D D L+ + +AL H Sbjct: 66 VLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVNHL 125 Query: 127 IDAE---TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + + +VG S A+ + I VA S ATVL+ G+SGTGKE+ A +IH Sbjct: 126 QEEVTFLRSELNKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIH 185 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S+R +KP V +NCAAL ESLLESELFGHEKGAFTGA R+ GRF A+ GTLFLDEI Sbjct: 186 QLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEIT 245 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 ++ MQV+LLR +QE+E +RVG I +DVR+IAAT+RD + G FR+DL+YRLN Sbjct: 246 EMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLN 305 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 V+ I +P LR+R EDIPLLA HF+++F + +P+AM LLI Y+WPGNIREL+N Sbjct: 306 VLPIHLPPLRERTEDIPLLAMHFIKKFNP---SQEQRMSPEAMGLLISYEWPGNIRELQN 362 Query: 364 AVERAVVLLTGEYISERELPLAIASTPIPLGQ---------SQDIQPLVEVEKEVILAAL 414 +ER+++L G I LP I + D EVEKE+IL AL Sbjct: 363 VIERSIILAQGNEIKPHHLPKEIQKLDEVKNETTHGLIINFPDDGISFDEVEKELILKAL 422 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 EK+ GN+T AA+ LGITR LL + + Sbjct: 423 EKSNGNQTRAAQLLGITRSALLYRAQK 449 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 668 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 198/450 (44%), Positives = 280/450 (62%), Gaps = 16/450 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDDD L +L GY A G +A+ ++ +Q FD+V+ D+ M MDG+ Sbjct: 9 KILLVDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAELDKQFFDVVVTDLNMPGMDGMG 68 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK ++ + L++T + S+ +VEA+K GA DY+ KP+ FD L ++ A+ Sbjct: 69 VLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVSTAIKFKR- 127 Query: 127 IDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ E + VG SP +Q + I VA +++TVLI G+SGTGKEL+AR Sbjct: 128 LERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIAR 187 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +S R + P+V +NC A+ E LLESELFGHEKGAFTGA K R GRF A+GGT+FLD Sbjct: 188 AIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIFLD 247 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+SP +QV+LLR IQE+ +R+GS + + VD+R++AAT++DL V FR+DLYY Sbjct: 248 EIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYY 307 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ IEVP LR R+ DIPLL F+ + A + VK + AM+ L+ + WPGN+RE Sbjct: 308 RLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNVRE 367 Query: 361 LENAVERAVVLLTGEYISERELPLAI---------ASTPIPLGQSQDIQPLVEVEKEVIL 411 LEN VER ++L +G+ I + +LP I A +P G + + E EK +I+ Sbjct: 368 LENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGGIRFDHAVEEYEKNLIV 427 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ALE+ KT+AA+ L I R TL+ K+ R Sbjct: 428 QALEEANWVKTQAAKLLHINRTTLVEKMKR 457 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 198/445 (44%), Positives = 293/445 (65%), Gaps = 7/445 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ IL++DD+ + +L A L GY V A GR L ++E +D+++ D+++ Sbjct: 1 MS-TKKRILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLITDLKLP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++ G+ L+++KA P +PV+++TAY S+ AV+A+K GA +YL KP+D D L ++ Sbjct: 60 DITGLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNV 119 Query: 121 LAHTHSIDAETPAVTASQF-----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + ++ + MVGKS AMQ L + I VA EA VL+ G++GTGK Sbjct: 120 FERSQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVAR IH + P V ++CAA+ E+LLESELFGH +GAFTGA ++++G+ A GG Sbjct: 180 ELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++ +Q + LR +QE+E+ R+G + VDVR+IAAT+RDL AE+ AG++R Sbjct: 240 TLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV++IE+P LR+RR+DIP L HFL ++ +N KA++G T + M++ + YDWP Sbjct: 300 EDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALE 415 GN+RELEN +ERAVVL G+ I+ LP + P S D L+E+EK +I+ LE Sbjct: 360 GNVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAP-APSTDGVNLMEMEKRLIVQTLE 418 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 KT N++ AAR+LGI+RK L K+ Sbjct: 419 KTEQNQSAAARELGISRKQLRTKMK 443 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 663 bits (1712), Expect = 0.0, Method: Composition-based stats. Identities = 200/435 (45%), Positives = 284/435 (65%), Gaps = 1/435 (0%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +IL +DD+IS + A+LR GY V + + + +E ++ + +L D R+ MDGI Sbjct: 2 ANILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLPGMDGI 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L+ +K +IP +++TAY ++E AVEA+K GA YLIKP+D + L +++A+ + Sbjct: 62 DLLRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVIKEAIEKSK 121 Query: 126 SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 I + ++GKS +Q + + +VA S A VLI G+SGTGKELVARAIH + Sbjct: 122 GIQK-LEKIETPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKN 180 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S R KP + ++C + E+LLESELFGHEKGAFTGA +R+ G A+ GT+FLDEIG++ Sbjct: 181 SLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGEL 240 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 ++Q +LLR +QE+E+QR+GS Q I VDVR+I+AT++DL + G FR+DLY+RLNVV Sbjct: 241 PMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVV 300 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 I +P LR+R+EDIPLL HFL +F++ N K + P+ M+ LI+Y WPGNIREL N + Sbjct: 301 RINLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELANVI 360 Query: 366 ERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAA 425 ERAVVL IS + LP I ++ L+EVEK +IL AL TG N+T+AA Sbjct: 361 ERAVVLSPSGLISIKHLPRRIQENTGWTIIKENTFNLLEVEKALILKALNSTGWNQTKAA 420 Query: 426 RQLGITRKTLLAKLS 440 LGI+RK L K+ Sbjct: 421 EILGISRKQLRTKMK 435 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 271/457 (59%), Positives = 331/457 (72%), Gaps = 20/457 (4%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 ++LVVDDD H ++L+ +L GWGY V A G +A+E VR + FD VL DVRMA M G Sbjct: 2 RAELLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRPFDAVLLDVRMAGMGG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L IK NPA+PVLIMTAYSSVETAV ALK+GA DYL KPLD D ++ T+E+AL H Sbjct: 62 MEALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDHL 121 Query: 125 HSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 G ++GKSPAM+ L S IA+VAP+EATVL+ G+SGTGKELVA Sbjct: 122 RLARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 +A+HA S R+ P+V +NCAALNE+LLESELFGHEKGAFTGA++RREGRF+ AD G++FL Sbjct: 182 KALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFL 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG+I+P +Q +LLR IQERE+QRVG ++ + VDVR++AAT+RDL EV AGRFR+DLY Sbjct: 242 DEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLY 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVVAI VP LR+R +DIPLLA HFL RFAE+NRK +KGFTP AMD L+ WPGN+R Sbjct: 302 YRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGNVR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI---------------QPLVE 404 ELENAVERAV+L GEY++ERELPL+ G L + Sbjct: 362 ELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMALDD 421 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 VE+EVILA L TGGNK+EAAR LGITR TL KL + Sbjct: 422 VEREVILATLRDTGGNKSEAARVLGITRATLHKKLKK 458 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 658 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 204/471 (43%), Positives = 290/471 (61%), Gaps = 31/471 (6%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M + ILVVDD+ + +L A L GY V A G + L ++E DLV+ D+RM Sbjct: 1 MLPEKKQILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++DG+ L+ +P+ PV+++TA+ +V+ AVEALKTGA DY+ KP D + ++ ++KA Sbjct: 61 KVDGMDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKA 120 Query: 121 LAHT--------HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 L + A P + +FG++G+SP +Q L + + VA + TVLI G+SG Sbjct: 121 LRTRDLASADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTTVLISGESG 180 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKELVARA+H +S R ++P + +NCAA+ + L+ESELFG+E+GAFTGA + GRF A Sbjct: 181 TGKELVARALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGRFELA 240 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 GGTLFLDEIG+I MQV+LLR +QE E +RVG + I VDVRL+AAT+RDL E+ AG Sbjct: 241 SGGTLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIAAG 300 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR+DL+YRLNVV I +P+LR RR DIP L HF+ +F R +K+++ P+A++ L + Sbjct: 301 TFREDLFYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPEALERLASH 360 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ------------ 400 WPGNIRELEN VERA++ G I +LP I + Sbjct: 361 AWPGNIRELENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAAAAADTSAAPS 420 Query: 401 -----------PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + ++E+++I AL++T GN T AAR L I+RK L K+ Sbjct: 421 TPDGLKEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKMK 471 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 199/445 (44%), Positives = 287/445 (64%), Gaps = 9/445 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +LVVDD+ S L +L Y VA A +G Q +++ + D+++ D+RM E DG Sbjct: 3 KKRVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEKDG 62 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 L++IK+ IPV++MTA+ + E A++A+K GA DY++KP D D +++A+A + Sbjct: 63 FGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVAQS 122 Query: 125 HSI---DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 ++ +++ ++G SP+M+++ +I VA S ATVLI G+SGTGKELVARA Sbjct: 123 DTVATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVARA 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S+R P + +NCA L +SLLESELFG+EKGAFTGA + GRF A GT+F DE Sbjct: 183 IHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFFDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG+IS Q +LLRAIQE+E RVG + I V+VR++AAT+R L V G FR+DL++R Sbjct: 243 IGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLFFR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV IE+P LR R+EDIPLL HFL ++ + K +KGF+ +A+ LLI YDWPGN+REL Sbjct: 303 LNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVREL 362 Query: 362 ENAVERAVVLLTGEYISERE--LPLAIASTPIPLGQSQDIQPLV----EVEKEVILAALE 415 EN VER++++ G I + L ++ P L + L +VE++VIL ALE Sbjct: 363 ENVVERSIIMARGAIIVPEDIQLGATVSQQPTELEILDENLSLKQIISDVERKVILKALE 422 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 + +T A+ L I R++L AK+ Sbjct: 423 ENNWCRTTVAKVLKINRRSLYAKMK 447 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 204/459 (44%), Positives = 282/459 (61%), Gaps = 22/459 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MTH ++LVVDD+ C +L + L G V A +G AL+ + ++ DLV+ D RM Sbjct: 1 MTH---NLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMP 57 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG L EIK P +PV++MTAYS+V+ AV++++ GA DY+ KP D D L T+ KA Sbjct: 58 GMDGPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKA 117 Query: 121 LAHT------HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 L + AE A +VG SPA + +L + V S AT+L+ G+SGTG Sbjct: 118 LQFRDILKDNQRMRAEL-AEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTG 176 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KE+VARAIH R++KP V +NCAA+ E LLESE+FGH KGAFTGA R GRF +AD Sbjct: 177 KEMVARAIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADK 236 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GTLFLDE+GD+ +Q ++LRA+QER ++ VG + VDVR+IAAT+++L V F Sbjct: 237 GTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEF 296 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DLYYRLNV I +P+LR+R EDI LLA HF K + GF+P+A+ + Y W Sbjct: 297 REDLYYRLNVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPEALQAMASYAW 356 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI------------QPL 402 PGNIREL+N VERA ++ TG+ I E++LP + +S L Sbjct: 357 PGNIRELQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSAAISVGPQVPSDLEAAL 416 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EVEK ILAAL+++ G + AA+ +GI+ ++ +L + Sbjct: 417 AEVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKK 455 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 213/447 (47%), Positives = 285/447 (63%), Gaps = 6/447 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ +LVVDD++S L R GY V + S +AL +V EQ +DL L D++M Sbjct: 1 MSVSKGKLLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAEQTYDLALLDIKMR 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 DG+ +++ L P + V++MT Y+SVETAV L+ GA DY+ KPLD + + KA Sbjct: 61 GTDGVELQRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDPEETAHLVSKA 120 Query: 121 LAHTHS----IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 LAH + + + + +V +S AM+ + I VAP++ATVLI G+SGTGKE Sbjct: 121 LAHKRTEQENVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 +VARAIHA S R P+V ++C AL E+LLESELFGHEKGAFTGA R++G+F A+GGT Sbjct: 181 VVARAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIGDIS Q LLR +QERE+ RVG NQ I VD R++AAT++DL + G FR Sbjct: 241 VFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRP 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNV IE+P LR RREDIPLL HF ++FAE+ K V AM++L Y WPG Sbjct: 301 DLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERE--LPLAIASTPIPLGQSQDIQPLVEVEKEVILAAL 414 N+RELENAVERA+V+ + E + L + A+T + + L ++EKE IL L Sbjct: 361 NVRELENAVERAMVVAQEPELRETDFVLKVKAAATMSSTNGTGTPKTLEDIEKEHILHVL 420 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 ++T N+T AA L I R TL K+ R Sbjct: 421 DETNWNQTRAAEMLDIDRVTLHHKIKR 447 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 215/454 (47%), Positives = 292/454 (64%), Gaps = 16/454 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT N IL+VDD+ + +L G+ AN+GR AL + D+VL D+RM Sbjct: 1 MTAIN-RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGI LKE+++ PV++MTAY+ VETAVEAL+ GA DY+IKP D D L +++A Sbjct: 60 EMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRA 119 Query: 121 LAHTHSIDAETPAVTASQF------GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 L S+ E + + ++ SPAM + + A +A S+A+VLI G+SGTG Sbjct: 120 L-QLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTG 178 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KEL+ARAIH +S R++ P + +NCAAL ESLLESELFGHEKGAFTGA R+G F A+ Sbjct: 179 KELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANE 238 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GTL LDEIG++ ++Q +LLR +QERE +R+G +Q I VD+R+IAAT+RDL A V G F Sbjct: 239 GTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DL+YRLNV+ + +P LR RREDI LLA HFLQ+F+ N++ + P AM LL + W Sbjct: 299 REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSW 358 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIAS--------TPIPLGQSQDIQPLVEVE 406 PGNIREL N +ERAVV+ +G I +LP I P+G+ + + VE Sbjct: 359 PGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVE 418 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 K +I+ LE+ GN+T A LGI+R+ L+ KL Sbjct: 419 KRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQ 452 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 181/452 (40%), Positives = 279/452 (61%), Gaps = 18/452 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L+VDD+ C +L+ +L G+ + LA + + AL+ + + D VL D+R+ + DGI Sbjct: 3 KVLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDALKIMETEFPDTVLLDIRLPDADGIE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 + ++K + +PV++MTA+ + E A++A+K GA DYL KPL+ D L ++K++ Sbjct: 63 VMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIKMQRL 122 Query: 127 ------IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E T S +G+S MQ + I V S+ TVLI G+SGTGKE+VAR Sbjct: 123 VSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVAR 182 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH++S RS +P + +NCA + E L+ESELFGHEKG+FTGA ++ G+F A G +FLD Sbjct: 183 TIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFLD 242 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++ Q +LLR +QE+E +RVG + I VDVR++AAT+R+L V G+FR+DLYY Sbjct: 243 EIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYY 302 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV +++P LR+R+EDI LL +F+++FA + K + G + +AM Y WPGN+RE Sbjct: 303 RLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWPGNVRE 362 Query: 361 LENAVERAVVLLTGEYISERELP--------LAIASTPIPLGQSQDIQPL----VEVEKE 408 ++N E+AVV+ + ++P L + + D + L EVEK+ Sbjct: 363 IKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLDTNDKRSLKDIVAEVEKQ 422 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 VIL +L + N+ A+ LG+ R++L AK+ Sbjct: 423 VILKSLNENNWNRQNTAKALGLNRRSLYAKMK 454 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 193/452 (42%), Positives = 283/452 (62%), Gaps = 18/452 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDD+ L LR V A SG++AL +++ FD+V+ D++M ++ GI Sbjct: 3 KILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTGID 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L++ K ++P V+++TA+ S+E AVEA+K GA +YLIKP D ++A +EKA H Sbjct: 63 ILRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHLSL 122 Query: 127 IDAETPAV-------TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + + + F ++G+SP M+ +L ++ VA S A+V I+G+SGTGKE++A Sbjct: 123 VQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIA 182 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 +AIHA+SARS+ P + +NCAA+ E+L+ESE FGHEKGAFTGA+ +R GRF A GTL L Sbjct: 183 QAIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLL 242 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEI +I +Q +LLRAIQE+E +RVG ++ I VDVRLI+ ++RD+ + R+DLY Sbjct: 243 DEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLY 302 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVV I +P LR R EDI LA +FL++ N K K F+ +++ L+ Y WPGN+R Sbjct: 303 YRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFSKESIKKLVGYAWPGNVR 362 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-----------PLVEVEKE 408 EL N VERAVV+ T I+ L + +PL + + L E+EK Sbjct: 363 ELANIVERAVVMTTNSEITPEHLYIENNHPNLPLRTASTLSQNTLTSLPVGMTLQELEKR 422 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +I+ L+ N+T+ A LGI+ +TL KL+ Sbjct: 423 LIIETLQAQHNNRTKTAEVLGISVRTLRNKLN 454 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 649 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 207/455 (45%), Positives = 297/455 (65%), Gaps = 20/455 (4%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +LV+DD+ + +L A+LR G++V +A +G Q L + + D+V+ D+ M ++ G+ Sbjct: 2 AKVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGM 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L I+A NP +PV+I+TA+ +V++AV+A+K GA DY+ KP D L + + KA Sbjct: 62 EVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAAKTNE 121 Query: 126 SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 S ++ ++G S +Q + I VA + +TVLI G+SGTGKEL+A A+H + Sbjct: 122 SARRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGA 181 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S+R +KP + +NCAA+ +LLESELFG+E+GAFTGA + GRF AD GTLFLDEIG+I Sbjct: 182 SSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEI 241 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 MQV+LLRAIQE E +RVG + VDVRL+AAT+RDL AE+ AGRFR+DLYYRL VV Sbjct: 242 PVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVV 301 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 I +P+LR+RR D+P+LA HF++++ R K ++G AM LL Y WPGNIRELEN + Sbjct: 302 PISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELENLI 361 Query: 366 ERAVVLLTGEYISERELPL----------------AIASTPIPLGQS--QDIQPL--VEV 405 ER ++ G I+ R+LP A+AS +P G+ +DI + E+ Sbjct: 362 ERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAEL 421 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 E+++I+ LE+TGGN T AAR L I+RK+L K+ Sbjct: 422 ERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMK 456 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 649 bits (1675), Expect = 0.0, Method: Composition-based stats. Identities = 187/449 (41%), Positives = 280/449 (62%), Gaps = 15/449 (3%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 + +L+VDDD+S +L+ L+ GY V A SG + L + LV+ D++M M Sbjct: 7 KTVRVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMG 66 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL-- 121 G L+E+K P V+++TA+ +VE AVEA+K GA D++ KP + + L+ T+ KAL Sbjct: 67 GFQLLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDM 126 Query: 122 ---AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + + E + ++G SP M+ + I VA ++ATVLI G+SGTGKELV Sbjct: 127 QGLSRENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGESGTGKELV 186 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARAIH S+R P V +NCAA+ LLESELFGH KGAFTGA + +EG+F +A+ GTLF Sbjct: 187 ARAIHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTLF 246 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDE+G++ +Q +LLRA+QE+EVQ VG I +DVR++AAT+ DL + GRFR+DL Sbjct: 247 LDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFREDL 306 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRL+V+ + +P LR+R+EDIPLL HF A ++ A F+P+ + ++ Y WPGN+ Sbjct: 307 FYRLSVIPVHLPPLRERKEDIPLLVRHF----AAKHGGASVTFSPEILAVMAAYGWPGNV 362 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQ------SQDIQPLVEVEKEVILA 412 RELEN VER +++ + I +LP + P + + L ++E+E+++ Sbjct: 363 RELENTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVINLPDEGYSLEQLEREIVVE 422 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ALE+ N++ AAR L I R TL+ ++ + Sbjct: 423 ALERNNWNQSSAARFLRIPRHTLIYRMEK 451 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 205/452 (45%), Positives = 287/452 (63%), Gaps = 12/452 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M +N ILV DDD S TIL+ LL GY V++A G Q ++QV++ DL+L DVRM Sbjct: 1 MAENNRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++DGI LK+++A +P+++MTA+ + T ++A++ GA DY+ KP D D++ T+ + Sbjct: 61 KIDGIEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINRF 120 Query: 121 LAHTH-----SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 AE ++G SP MQ + I LVA S+ATVLI G++GTGK Sbjct: 121 FEQQKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVA IH +S S+ PLV +NCAAL E+LLESELFGHEKG+FTGAD++R+GRF A G Sbjct: 181 ELVAETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDEIG+++ Q +LLR +QERE +RVG + I VD R+IAAT++ L EV AG+FR Sbjct: 241 TIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV+ I +P LR+R+EDIPLL +FLQ+ + +A+ +L+ +DWP Sbjct: 301 EDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ---DIQPLVE----VEKE 408 GN+RELEN +ERAV+L G I+ L + T + S+ + L E +E + Sbjct: 361 GNVRELENTIERAVILAQGGVITTHHLVFSQIRTGRNIDLSEVIDKTRSLDEAMRIIESK 420 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +IL ALEK G+ AA L I+ L KL Sbjct: 421 IILEALEKAKGDHALAAEILDISESELKRKLR 452 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 214/450 (47%), Positives = 296/450 (65%), Gaps = 13/450 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ ILVVDD+ + + +L GY VA A +G +AL ++ E +VL DVRM Sbjct: 1 MSPQ--RILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMP 58 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +MDG+ LK + ++MTA++SVETAVEA+K+GA ++L+KPLD D + TL K Sbjct: 59 QMDGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKV 118 Query: 121 LAHT------HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 L ++ + + ++G+SP +Q + I A + ATVLI G+SGTG Sbjct: 119 LEKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTG 178 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KEL+A+A+H S R +KP + ++CAAL+E+LLESELFGHEKG+FTGA R+EGRF ADG Sbjct: 179 KELIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALARKEGRFELADG 238 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GTLFLDEIG+ISP +QV+LLR +Q+RE +RVG Q + VDVR++AATHRDL AEV AGRF Sbjct: 239 GTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRF 298 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DLYYRLNVV++ +P LR R+ D+P L HFL+++++ K V+G P + L+ +DW Sbjct: 299 REDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPGTLQALLSHDW 358 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI----QPLVEVEKEVI 410 PGNIRELENA+ERAVVL G+ +S +LP + P P G S L +E+E I Sbjct: 359 PGNIRELENAIERAVVLAQGQELSTDDLPPVLRG-PRPHGTSTGALIPGATLAAIEREAI 417 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L LE G+ + AA LGI+ + + +L Sbjct: 418 LRTLEMVQGSTSRAAEVLGISVRKIQYRLK 447 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 644 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 218/437 (49%), Positives = 297/437 (67%), Gaps = 4/437 (0%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDDD H T+L+ L GY V A G + L ++ + DL+L D++M +DG+A Sbjct: 3 KILLVDDDKGHRTMLKVNLGELGYQVITAGDGDEVLAKLTKNKIDLILLDMKMPRIDGLA 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 TL + N IPV+++TA+SS+E A+EA+K GA DY+ KP+D DNL + KAL S Sbjct: 63 TLSLLSQQNNRIPVIVITAFSSMENAIEAMKKGAFDYVTKPVDIDNLHIAISKALHQKIS 122 Query: 127 IDAE---TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 P + ++G+S MQ L S+I+L+APS+AT+L+ G+SGTGKELVA AIH Sbjct: 123 PPLSPGTEPQADSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAIH 182 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S R E L+ +NCAAL+E+LLESELFGHE GAFTGA K+++G F AD GTLFLDEIG Sbjct: 183 RHSKRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDEIG 242 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+S QV++LR +QE E +RVG N I V+VR+IAA+HR+L + G FRQDL++RL+ Sbjct: 243 DMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLS 302 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV + +P+LR+R DIP+LA FL + ++NRK +KGF+ +A+DLL+ Y WPGNIRELEN Sbjct: 303 VVPLHLPALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIRELEN 362 Query: 364 AVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTE 423 ++ER V+L GE I+ ELP P G+ L +VEK I AL ++G NK+ Sbjct: 363 SIERGVILCLGEQITAHELPPQFFRNRSP-GELSSRDTLRDVEKRAIQQALARSGFNKSA 421 Query: 424 AARQLGITRKTLLAKLS 440 A+QLGI R+TLL K+ Sbjct: 422 TAKQLGIARQTLLNKIR 438 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 643 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 188/451 (41%), Positives = 277/451 (61%), Gaps = 17/451 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILV++D+ ++ + LL GY V A +G +ALE + + F+++L D+ + + GI Sbjct: 18 ILVIEDEAANREAIALLLGNAGYQVTTAETGEKALEILSKTPFEVILTDLFLPGVSGIEI 77 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK +K P V+++T S E+AVEA+K GA DY+ KPL F+ LQ + KA+ + + Sbjct: 78 LKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQVIIAKAVEKSRLV 137 Query: 128 DAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + ++G S MQ++ S + V +++T+LI G+SGTGKELVA+AI Sbjct: 138 AENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGKELVAKAI 197 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H + R EKP V +NC A+ LLESELFGH +GAFTGA + G+F +A GT+FLDEI Sbjct: 198 HYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQGTIFLDEI 257 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G + +Q++LLR +QE+EV++VGS++ I +DVR+I+AT+ +L EV GRFR DLYYRL Sbjct: 258 GTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFRADLYYRL 317 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ I +P LR+RREDI LLA +FLQ+ + + TP AM+ L +Y WPGN+RELE Sbjct: 318 NVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWPGNVRELE 377 Query: 363 NAVERAVVLLTGEYISERELPLAIAST-----------PIPLGQSQDIQPLVE-VEKEVI 410 N +ER V L I + +LP I+ + P D+ ++ +E+ +I Sbjct: 378 NVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRLTESGMDMPEVIAGIERCLI 437 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +A+ +GG K AA L I R TL+ K+ R Sbjct: 438 KSAMGLSGGVKARAASLLNIKRTTLVEKIKR 468 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 643 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 192/443 (43%), Positives = 281/443 (63%), Gaps = 6/443 (1%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 + IL VDD+ C L +L WG+ V +A G AL + E D+VL D+ M E DG Sbjct: 3 SARILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRKANEFRPDVVLSDLAMPETDG 62 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L+ +K P PV+ +T +++ AVE+++ GA D+++KPLD L+ +++AL Sbjct: 63 LWLLRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALEKK 122 Query: 125 HSIDA----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ ++ +S M+ ++ + VAPS+A+V I G+SGTGKE+V+R Sbjct: 123 ETMREVQTLRRRLKQLGSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVVSR 182 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H S R +KP + +NCA++ +L+ESELFGHE+GAFTGAD+RR G F A GGTLFLD Sbjct: 183 AVHNLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLFLD 242 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+G+I +Q +LLR ++E +++R+G I VDVR++ AT+RDL E+ GRFR+DLY+ Sbjct: 243 ELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDLYF 302 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV I +P LR+RR+D+P+L HF+ +F + K V G P+AM++L +YDWPGNIRE Sbjct: 303 RLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNIRE 362 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI--QPLVEVEKEVILAALEKTG 418 L NAVERAV+L GE I+ LP +A + L VE+E IL +L++ G Sbjct: 363 LRNAVERAVILCDGELITREHLPPDMAGKSPERHTFRLPFGLSLDAVEREYILGSLQRNG 422 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 NK A LG++ KTL KL+R Sbjct: 423 NNKARTAEVLGVSEKTLYNKLNR 445 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 200/446 (44%), Positives = 275/446 (61%), Gaps = 10/446 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ IL DD+ + I+ L GYNV SG++ ++ ++E+ +D+ + D+ M Sbjct: 1 MS-KKPTILFTDDEGTFRNIMSKELDRMGYNVTCCASGQETIKNMQERDYDVAILDMNMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M+GI TLK++K + P V+I+T S+E AV+A+K GA DYL KP L L++A Sbjct: 60 VMNGIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQLKELDLLLQRA 119 Query: 121 LAHTHSIDAETPAVT------ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 L + E + M+G SPA++ + I APS+ TVLI G+SGTG Sbjct: 120 LE-KRKLSRENFHLKTLVHDVQKPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTG 178 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KEL A+ IH S R++KP V +NCA L ESLLESELFGH KGAFTGA + R G F A+G Sbjct: 179 KELAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEG 238 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GTLFLDEIG+++ Q +LLR IQ E++RVG N++I+VD R+IAATH++L EV GRF Sbjct: 239 GTLFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRF 298 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DLY+RLNV+ + +PSLR+R++D+ L HFLQ+F + + P+A+ + YDW Sbjct: 299 REDLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK--GERTMDMHPEALHAMTLYDW 356 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAAL 414 PGNIRELEN +ER VVL G IS ELP I L EVEK I+ L Sbjct: 357 PGNIRELENTIERTVVLADGNIISIEELPDNIRGRTYEHYGKNGEIALSEVEKNHIIQVL 416 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLS 440 ++ +K AA+ LGI+ KTL K+ Sbjct: 417 KEKNWHKPLAAKTLGISLKTLYNKMK 442 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 198/458 (43%), Positives = 291/458 (63%), Gaps = 19/458 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT +++ +LV DD++S +LQ L GY V +G++AL +E +D+ + D+RM Sbjct: 11 MT-ESVRVLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIRMP 69 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 E+DG+ EI + P +P+++MTA+ S ETAV A+K GA DY++KP + D ++ + +A Sbjct: 70 EVDGLQAFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSRA 129 Query: 121 LAHTHSIDA---------ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDS 171 + E + +VG+S +Q + I VA S+ATVL+ G+S Sbjct: 130 IRMQQLTKEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVANSKATVLLTGES 189 Query: 172 GTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE 231 GTGK +VA+AIH +S R EKP + +NC ++ E LLESE+FGHEKGAFT A ++ G+F Sbjct: 190 GTGKGMVAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQKPGKFEL 249 Query: 232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNA 291 A+GGTLFLDEI ++SP +QV+LLR +QE+E +RVG + +VR+IAAT+RDL E++ Sbjct: 250 AEGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDLNKEISE 309 Query: 292 GRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 FR+DLYYRLNVV+I +P L +R EDI LLA +FL+RF+ + F P+ +D+ + Sbjct: 310 KSFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMFFAPEVLDIFRN 369 Query: 352 YDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQS-----QDIQPLV--- 403 Y WPGNIRELENAVE A+++ I LPL+I + + +PL Sbjct: 370 YSWPGNIRELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTIILGDDSFKPLREVL 429 Query: 404 -EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 EVEK I A+E+TGGN+T+AA+ L I+R+ LL K++ Sbjct: 430 LEVEKRHISEAIERTGGNRTQAAKLLQISRRALLYKIN 467 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 204/454 (44%), Positives = 284/454 (62%), Gaps = 14/454 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + IL++DD+ ++ +LQ LL GY V + AL + E D+V+ D++M Sbjct: 1 MS-EKAHILIIDDEKNYLLVLQTLLEDEGYTVTAISDPETALAFLDESEVDVVVTDMKMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++ G L+ +K P IPVLIMTA+ S+E+AVE +K GA DY+ KP D L ++ A Sbjct: 60 KVTGRQVLERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYITKPFSNDELLLSIHNA 119 Query: 121 --LAHTHSIDAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 LA H V ++G +VG+S A++ +L + APS +TVLI G+SGTGK Sbjct: 120 VELARAHRQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+ARAIH +S R + P V++NC ALN +LESELFGHEKG+FTGA R GRF +ADGG Sbjct: 180 ELIARAIHYTSPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEI +++P +QV+LLR +QER +RVG + I VD+R++AAT++DLAA V G FR Sbjct: 240 TLFLDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 DLYYRLNVV I +P LR+RREDIPLL HF+ + N K F+ +A++ L Y+WP Sbjct: 300 DDLYYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKTFSTEALNYLTGYEWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP--------LVEVEK 407 GNIR+LEN VE +VL+ G I+ LP I + D+ P L ++E Sbjct: 360 GNIRQLENVVESCLVLVPGTVINVDNLPAEIRDEESQFKSAVDLLPVQLDLADTLEKIEA 419 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +I AL + + +AA LGI++ L KL + Sbjct: 420 ALIRRALVRADLVQVKAAEYLGISKSLLQYKLKK 453 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 198/449 (44%), Positives = 282/449 (62%), Gaps = 14/449 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDD+ ++ +L A+L GY ANSG +A++ + DLVL D++M MDG+ Sbjct: 3 TILIVDDEKNYPPLLAAVLGDEGYETLTANSGLEAIQILEGSDVDLVLTDMKMPGMDGME 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 ++ IK +P +PVL+MTAY +V+ + A++ GA Y+ KP + L +++ALA Sbjct: 63 LMERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQNEQLILFVKQALAMYRV 122 Query: 127 IDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + S ++GKSPAM ++ I VAP+ ATVLI G+SGTGKE+VA++ Sbjct: 123 VQENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKS 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R + P V +NCAAL ES+LESELFGHEKGAFTGA ++GRF ADGGTLFLDE Sbjct: 183 IHFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG+IS +QV+LLR +QE+ +RVG + I VD+RLIAAT+RDL EV FR+DL+YR Sbjct: 243 IGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFA--ERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 LNV+ I++P LR+R++DIPLL HFLQ++A V+ P L Y WPGN+R Sbjct: 303 LNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVR 362 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI-------QPLVEVEKEVILA 412 ELEN +ERA++L + IS +LP + + + I + L VE+ +I Sbjct: 363 ELENVIERAIILCNSDAISVNDLPRELTRSVSNTLHMEGIPVDATLYETLSMVEQAMIKR 422 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 A+ + ++ AA+ LGI + L K+ + Sbjct: 423 AMLMSDNVQSHAAQILGIGKSGLNQKIKK 451 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 199/457 (43%), Positives = 281/457 (61%), Gaps = 18/457 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 + ++LVVDD+ + +L A+L GY V A +G QALE V +Q FD +LCD++M Sbjct: 4 VDEPKKNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMP 63 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG+A L P V++M+AY +++TAVEALK GA DY+ KP D + L+KA Sbjct: 64 RMDGLAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKA 123 Query: 121 LAHTHSIDAETPAVTAS---------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDS 171 + + E A+ ++ KS AMQ + I VA + TVL+ G+S Sbjct: 124 -SERERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGES 182 Query: 172 GTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE 231 GTGKELVAR++H +S R+ L+ +NC + E+LLESELFGH KGAFTGADK + G Sbjct: 183 GTGKELVARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGLCEI 242 Query: 232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNA 291 A GTLFLDEIG++ +QV+LLR +Q+RE++ VG++ ++D+R++AAT R+L A+V Sbjct: 243 AHKGTLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADVAE 302 Query: 292 GRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 G FR+DL+YRLNV+ I +P LR R+EDIPLL F+Q F ++ K + G P A+ L+ Sbjct: 303 GVFREDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAPAALSRLLA 362 Query: 352 YDWPGNIRELENAVERAVVLLTGEYISERELPLAI----ASTPIPLGQSQDIQPLVE--- 404 + WPGN+RELEN +ERAVVL G+ I+ +LP A P D + Sbjct: 363 HTWPGNVRELENLIERAVVLAEGDTITPDDLPPGFGTDSAGGPGDALAGFDGYSIKAAQK 422 Query: 405 -VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 EK +I AL KTGGN+T ++ L I+ +LLAK+ Sbjct: 423 IFEKRLIEKALAKTGGNRTRTSKLLEISHPSLLAKMK 459 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 196/466 (42%), Positives = 274/466 (58%), Gaps = 33/466 (7%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILV DD+ S +L L+ G+ V LA+ GRQAL ++E +DL + D++M M G+ Sbjct: 5 RILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGMSGLD 64 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH- 125 L I+ + + V+IMTA +S++ AVEA+K GA DY+ KP D D + A +EK Sbjct: 65 LLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGRAREI 124 Query: 126 -----SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E + ++G S AMQ + I VA S+ T+LI G+SGTGKE+VAR Sbjct: 125 AGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKEMVAR 184 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +S R KP V +NCAA+ LLESELFG E+GAFTGA +R++G+F +A+ GT+FLD Sbjct: 185 AIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGTIFLD 244 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ +Q ++LR +QE EV RVG Q I+V+VR++AAT+++L V FR+DLYY Sbjct: 245 EIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFREDLYY 304 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV I + LR+RR+DIP L +FL R K TP+AM LL + WPGN+RE Sbjct: 305 RLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALLSRHSWPGNVRE 364 Query: 361 LENAVERAVVLLTGEYISEREL----PLAIASTPIPLGQSQD------------------ 398 LEN ++RAV+L ++E + P + P S + Sbjct: 365 LENTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEAIVEAKLRSCLTGIEKLD 424 Query: 399 -----IQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 + L +VE+ +I LEKT N+ +AA LGI R TL K+ Sbjct: 425 KSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRKKI 470 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 200/445 (44%), Positives = 284/445 (63%), Gaps = 13/445 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 ILVV+D+ +++ L G++V A S + L+ V D+VL D+++ MDG Sbjct: 2 KKRILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDRA--DMVLTDLKLPNMDG 59 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 L I+ N +PV++MTA+ +VETAVEA+K GA D+L+KP D+L ++KAL Sbjct: 60 QEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALE-V 118 Query: 125 HSIDAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 ++ E + A +VG+SPAMQ + + I V PS ATVL+ G+SG GK+L+ Sbjct: 119 RALREENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLI 178 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARAIH S R ++PLV +NC A+ E+L+ESELFG+EKGAFTGA + G+F +AD GT+F Sbjct: 179 ARAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVF 238 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIGD+ +QV+LLR +QERE +R+GSN +DVRL+AAT++DL A + G FR+DL Sbjct: 239 LDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDL 298 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYRLNVV + +P LR+R+ DIP LA HF+ + A V+ T M+ L+ Y WPGN+ Sbjct: 299 YYRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMAYHWPGNV 358 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP----LVEVEKEVILAAL 414 RELEN +ER++V+ TG + ++ L A P G P L + E+E+I AL Sbjct: 359 RELENVIERSLVMATGTQLDADDIKLESAPRPRAQGNDNHFLPEGLSLDQYEQEIIREAL 418 Query: 415 EKTGGNKTEAARQLGITRKTLLAKL 439 + GNK++AAR LG+TR L +L Sbjct: 419 RRADGNKSQAARLLGLTRNALRYRL 443 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 198/447 (44%), Positives = 285/447 (63%), Gaps = 12/447 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 I+VVDDD L L+ GY+V +G+QA+ ++ ++ FD++ D++M MDG+ Sbjct: 5 KIMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMPGMDGME 64 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+++K ++ V++MTAY ++E+AVEA++ GA DY+IKP D ++ + + Sbjct: 65 ALEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRVNERQKL 124 Query: 127 IDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 I +AS + K+ M + ++ +A S+A+VLI G+SGTGKELVARA Sbjct: 125 IAENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGKELVARA 184 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R EKP + +NCAAL ESLLESELFGHE+GA+TGA +R GRF A+ GTL LDE Sbjct: 185 IHYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEGTLLLDE 244 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 + +ISP +Q +LLR ++E E +RVG + I +DVR++A T+RDLA E+ G FR+DL+YR Sbjct: 245 VSEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFREDLFYR 304 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV I +P LR+RREDIPLLA +L++++ N +VK +AMD L Y+WPGN+REL Sbjct: 305 LNVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWPGNVREL 364 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI-------QPLVEVEKEVILAAL 414 +N ++RAVV+ + E + I D Q + + EKE+I L Sbjct: 365 KNIMQRAVVMGSSEELGLENFTSLIDIKKSEHTMCNDSVNIKKNGQSIEDAEKELIFTTL 424 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 EKTGGNKT+AA L IT +TL KL++ Sbjct: 425 EKTGGNKTKAAGLLKITTRTLRNKLNK 451 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 190/441 (43%), Positives = 277/441 (62%), Gaps = 6/441 (1%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 I +LV+DD+ L+ +L+ GY+V +SG +AL+ + +Q FD+VL D++M ++DG Sbjct: 2 IKVLVIDDEKITLKNLEHVLKKEGYDVTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDGF 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L++ KAL P V+++T Y++VE AV A+K GA Y+ KP D ++ + +A Sbjct: 62 EILRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYIAKPFKLDIIRKIILEASEKVK 121 Query: 126 SIDAETPAVTASQF----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 F ++ ++ M LL +AP++ VLI G+SGTGKEL AR Sbjct: 122 LKKEVKQLRQQLDFHEKVNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARY 181 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R + P + +NC A +E LL +ELFGHEKGAFTGA+ ++G A G+LFLDE Sbjct: 182 IHLNSLRKKGPFLAVNCGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDE 241 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 I ++S MQ +LLR IQERE R+G+ + I VDVR IAAT+RD+ EV G+FR+DLYYR Sbjct: 242 ITEMSLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYR 301 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV IE+P LR+R++DIPLL +F ++++ +K + G + +A++LL++Y++PGN+REL Sbjct: 302 LNVVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEITGVSEEAINLLVNYEYPGNVREL 361 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD--IQPLVEVEKEVILAALEKTGG 419 EN +ERAVVL I LP + I + ++ L E+EKE I L + G Sbjct: 362 ENIIERAVVLCNSSQIDVEHLPQDLKELKIEVFTKKEGKFMSLEELEKEYIKWILREVGN 421 Query: 420 NKTEAARQLGITRKTLLAKLS 440 NKT AA+ LGI R +L KL Sbjct: 422 NKTVAAQILGIDRVSLWRKLK 442 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 200/456 (43%), Positives = 289/456 (63%), Gaps = 15/456 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 +T N IL+ +DD + + L LL GY + ++GR+A++ E ++LV+ D++M Sbjct: 10 VTMKNQKILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVEDKYELVITDLKMP 69 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 DG+ LK +K +NP V++MT Y +V++AVEA+K GA DY+ KP+ D + T+ +A Sbjct: 70 NGDGLELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMRNDLVTLTVNRA 129 Query: 121 LAHTHSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L++ + + M+G S M+ + I VA S++TV+I+G+SGTGK Sbjct: 130 LSYASLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGK 189 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARAIH +S R+ PL+ +NC A+ E LLESELFGHEKGAFTGA + R GRF A GG Sbjct: 190 ELVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRNRLGRFELAQGG 249 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 ++FLDEIGD+SP +QV++LR IQE++ +R+G + I+ DVR+IAATH++L V RFR Sbjct: 250 SIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRFR 309 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YR+NV+ I +P+LR+R DI +LA HFLQ+FA+ +K V FTP+A+ ++HY WP Sbjct: 310 EDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAIACMLHYPWP 369 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE----------V 405 GN+RELEN +E VV+ I +LP I ++ Q E Sbjct: 370 GNVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKKETQSFKEYQIPEEGIDFNDVVYQF 429 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EK ++L AL KT G K AA+ L + R TL+ KL R Sbjct: 430 EKNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLKR 465 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 200/446 (44%), Positives = 282/446 (63%), Gaps = 7/446 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M + ILVVDD+ L L GY VA GR A+E+++ + + +++ D++M Sbjct: 1 MPTETTRILVVDDEEIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMIVDLKMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG+ L+ K L P + V+IMTAY++V+TAV A+K GA DYL+KP D + L ++K Sbjct: 61 GMDGLQVLEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFDPEELSIMMQKI 120 Query: 121 LAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 ++ + A ++ KSPAMQ + A S +T+L+ G+SG+GK Sbjct: 121 VSQQSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E++ARA+HA S R+ P V ++CAAL ESLLESELFGHEKG+FTGA RR+G+F A GG Sbjct: 181 EVLARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDE+GDI P +Q+ LLR ++ER RVG N+ I VDVR+IAAT+RDL + G+FR Sbjct: 241 TLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV+ I VP LR+RREDIPLL +F++R + ++ ++G +P AM L+ +DWP Sbjct: 301 EDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALMAHDWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALE 415 GN+REL N +ER V+ TG I +L L + + L EVEK + A L Sbjct: 361 GNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEA--ASKPGTLASLEEVEKRHVAAVLA 418 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 GN +++AR LGI R TL K+ + Sbjct: 419 HANGNVSQSARILGIDRVTLYNKMRK 444 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 635 bits (1640), Expect = 0.0, Method: Composition-based stats. Identities = 209/442 (47%), Positives = 283/442 (64%), Gaps = 8/442 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ + L+ +L GY +A A G +AL + VL DVRM MDGI Sbjct: 14 RILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAVLADVRMPRMDGIN 73 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+ + ++MTA++SVE AVEA++ GA +YL+KPLD + + LEKAL Sbjct: 74 LLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPLDVNAVLVVLEKALEKLRL 133 Query: 127 ID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 E +VG +P + + + AP+ ATVLI G+SGTGKEL A+A Sbjct: 134 QRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFAQA 193 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S R++K + +NCAAL+E+LLESELFGHEKGAFTGA R+EGRF ADGGTLFLDE Sbjct: 194 LHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFLDE 253 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGDISP +Q++LLR +Q+RE +RVG Q + VDVRL+AAT+RDLAAEV GRFR+DLYYR Sbjct: 254 IGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLYYR 313 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVVA+ +P LRQR+ DIP L HF+ ++++ K ++G P ++ ++ +DWPGN+REL Sbjct: 314 LNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNAVLSHDWPGNVREL 373 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP---LVEVEKEVILAALEKTG 418 EN VERAVVL G ++ +LP + + P L E+E+E IL LE G Sbjct: 374 ENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPGALIPGATLYEIEREAILRTLEMVG 433 Query: 419 GNKTEAARQLGITRKTLLAKLS 440 G+ + AA LGI+ + + +L Sbjct: 434 GSTSRAAEILGISVRKIQYRLK 455 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 634 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 187/439 (42%), Positives = 270/439 (61%), Gaps = 5/439 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+VDDD+ +++ L G N L + G +A E V Q DL++ D+ M ++DG+ Sbjct: 6 ILIVDDDLRMRQLIRDTLASEGINAVLCSDGAEAAEMVLRQTTDLIITDLMMPQIDGMEL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L NP V+++T Y S+E+AV+A+K GA DYL KP + D L +++AL Sbjct: 66 LNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQRALVRLRLQ 125 Query: 128 DAETPAVTA----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 D ++G S M L + I +AP + TVLI G++GTGKEL AR IH Sbjct: 126 DENRQLRQQVAGCQADELLGASKQMTTLKALITRIAPFDTTVLIQGETGTGKELAARMIH 185 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S R ++ + +NC AL E+LLESELFGH +GAFTGADK ++G AD GTLFLDEI Sbjct: 186 RLSQRRDQRFLPINCGALPETLLESELFGHARGAFTGADKDKKGLLESADHGTLFLDEIN 245 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 SP QV+LLR +QE RVG ++ SVD+R+IAA++ L EV GRFR DL+YRLN Sbjct: 246 TTSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQTGRFRSDLFYRLN 305 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV I +P LR+R DI LLA +FL R+A + + +P+A+ L +Y WPGN+RELEN Sbjct: 306 VVTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSSISPEALQSLRNYHWPGNVRELEN 365 Query: 364 AVERAVVLLTGEYISERELP-LAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKT 422 +ERAV++ G + + LP +++ TP+ Q++ P+ EVE+ I+ L+ T G++ Sbjct: 366 IIERAVIMADGNELQPQYLPRFSVSDTPLSSSSDQELLPMAEVERRHIIRVLKATAGHRG 425 Query: 423 EAARQLGITRKTLLAKLSR 441 +A++ LGI+ +L K+ + Sbjct: 426 KASKLLGISLASLWRKVKQ 444 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 634 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 190/454 (41%), Positives = 282/454 (62%), Gaps = 16/454 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAE 61 N ILVV+D + L + GY+V +SG A++++ + V+DLV+ D++M + Sbjct: 2 MKNYKILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVYDLVVTDLKMKK 61 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 ++G+ L +K NPA V+++TAY ++ TAV+A++ GA DY+ KP + + + AL Sbjct: 62 VNGLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNAL 121 Query: 122 AHTHS------IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 ++ E + G++G S M +L A V+ +E+TVLI G+SGTGK Sbjct: 122 EKKELKERLKYLEGEVREKYKLE-GIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+ARAIH + RS P V +NC AL E+L ESELFGH KG+FTGA K + G F A G Sbjct: 181 ELIARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDEIG+ S QV+LLR +Q+ E+++VG N+ I VDVR+IAAT+ +L VN GRFR Sbjct: 241 TIFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YR+NV+ I +P L++R+EDIPLL +FL+ + ++ +K + F+ AM +L++YDWP Sbjct: 301 KDLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD--------IQPLVEVEK 407 GNIREL+N VERAV L + I LPL + ++ L E EK Sbjct: 361 GNIRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKSSIVETLSEQEK 420 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I+ A+ K GGN+T+ ++ LGI+ TL K+ + Sbjct: 421 NAIVEAMNKYGGNQTKVSQVLGISTTTLWRKIKK 454 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 176/436 (40%), Positives = 278/436 (63%), Gaps = 3/436 (0%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDDD +++ L+ +GY + +S +AL +++++ FDL+L D M E+ G+ Sbjct: 4 RILIVDDDRDILNLMKLKLKNYGYTIFTESSPVEALNRIKDEHFDLILVDQLMPELSGLE 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 + +K + PV++MTAY S+E AV A+K GA Y+ KP++F+ L+ +++AL + Sbjct: 64 FIDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINFEELKIIIDQALEVSDL 123 Query: 127 IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 + ++ +SP M+ +L +AP + TVLI G+SGTGKE++A IH +S Sbjct: 124 KKELNELKSLLSTDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIHKNS 183 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 R E+P + +NC A+ LLESELFG++KGAFTGA+ ++G EA+GGTLFLDEIG++ Sbjct: 184 LRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDEIGELP 243 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 +QV+LLR +QE E++ +GSN+ +DVR IAAT+RDL V G+FR+DLYYR+NV+ Sbjct: 244 LDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRINVIP 303 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 I +P LR+R+EDI LA +F+ +F R K + +A + L++YD+ GN+RELEN +E Sbjct: 304 IHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDYKGNVRELENIIE 363 Query: 367 RAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPL-VEVEKEVILAALEKTGGNKTEAA 425 RAV+ GE I+ ++P+ ++ I + + + E E+ + LEKT N ++A+ Sbjct: 364 RAVLTTEGEEIT--DIPVTVSKRYILSQELKPFKEAKKEFEESYLKNLLEKTDFNISKAS 421 Query: 426 RQLGITRKTLLAKLSR 441 + GITR + + R Sbjct: 422 KIAGITRAQIYRMIKR 437 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 196/453 (43%), Positives = 275/453 (60%), Gaps = 17/453 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + ILVVDD+ S L LL+ GY V + G+QA+ ++EQ +DL++ D++M + Sbjct: 25 ENQHRILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRL 84 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG L +K + ++++TA+S+ E AV+A+K GA DY+ KP + ++ +E AL Sbjct: 85 DGFGLLDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVENALE 144 Query: 123 HTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 S ++GKS MQ + I V+ S+ VLI G+SGTGKEL Sbjct: 145 RMDLRRENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKEL 204 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH +S R ++P V + C A+ E+LLESELFGHEKGAFTGA ++++G F ADGGTL Sbjct: 205 VARAIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTL 264 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEI ++ PMMQV+LLR IQE E ++VG + + VDVRL+AAT++DLA V +FR+D Sbjct: 265 FLDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFRED 324 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRLNV+ + +P LR RREDIPLL HFLQ+ + M + Y WPGN Sbjct: 325 LYYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFSTTIP---DGVMRRFLDYHWPGN 381 Query: 358 IRELENAVERAVVLLTGEYISERELPLAI---------ASTPIPLGQSQDIQPLVEVEKE 408 IRELEN VER VVL I+E LP + T +P L +EK+ Sbjct: 382 IRELENTVERCVVLGGKGEITEDSLPPHMLCISGTGDQQLTELPEEGLDLDDYLGAIEKD 441 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++L AL++TGG + AA L IT +++ +L++ Sbjct: 442 ILLKALDRTGGVRKRAAELLHITFRSIRYRLAK 474 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 633 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 184/444 (41%), Positives = 276/444 (62%), Gaps = 10/444 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+++D++S L L GY V A G + ++ + +Q FD+V+ D+R+ DG+ Sbjct: 3 KILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADGLE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK ++ P V+++T Y+ V+TAVEA+K GA DY+ KP + +L + +E+ L T Sbjct: 63 VLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFLCQTAH 122 Query: 127 ID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 ++ E A +V SP+M + + I + A ++++V+I+G+SGTGKELVA A Sbjct: 123 VEDSQRLREEVAEHQRFEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVANA 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S R +KP + +NCAA+ E+LLE+E+ G+EKGAFTGA +R++G+ ADGGT F DE Sbjct: 183 VHNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFFDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+S +Q +LLR ++ R +RVG + + VD+R I AT R L E+ G+FR+DLYYR Sbjct: 243 IGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLYYR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 +NV+ I +P LR+R +DIPLL F+ F + + V P+AM+LL Y +PGN+REL Sbjct: 303 INVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYPGNVREL 362 Query: 362 ENAVERAVVLLTGEYISERELPLAIA-STPIPLGQSQDIQPLV----EVEKEVILAALEK 416 ++AVE AV + I+ LP I +P G D L E E++ I+ L+K Sbjct: 363 KHAVEMAVTFCSDRVITPSCLPGEIREGSPALQGWRGDAGALESSRKETERQTIINVLKK 422 Query: 417 TGGNKTEAARQLGITRKTLLAKLS 440 TGG K AA+ LGI+R+TL KL Sbjct: 423 TGGRKMAAAKALGISRETLWRKLK 446 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 633 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 187/449 (41%), Positives = 273/449 (60%), Gaps = 8/449 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + ILV+DDD+ +L+ L G+ L GR+A + ++ + F+++L D++M Sbjct: 1 MSQPSDPILVIDDDLRMRQLLRDTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 GI L++ A NP V+++T + +VE+AVEA+K GA DY+ KP + D L T+++A Sbjct: 61 HFSGIEILEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVQRA 120 Query: 121 LAHTHSIDAETPAVTA----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 H +VG+SP ++ L IA VAP TVLI+G++GTGKE Sbjct: 121 TEHARLRQENRRLQQQVAGCRGDELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L A+ IH S R ++P + +NC AL E+LLESELFGH KGAFTGAD+ + G F D GT Sbjct: 181 LAAKLIHKWSGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQDKPGLFETVDQGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEI ++ QV+LLR +QE +VG Q DVR+IAA+ R L+ V AG FR+ Sbjct: 241 LFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFRR 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNVV++E+P LRQRREDIPLLA HFL ++ + K V+ + L+ + WPG Sbjct: 301 DLFYRLNVVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQVQTIPAPVITRLLDHSWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISEREL-PLAIASTPIPLGQSQDIQ---PLVEVEKEVILA 412 N+RELENAVERA++ G+ + L PL L + D + +EK++I+ Sbjct: 361 NVRELENAVERALLFCPGQELQAEHLPPLETGGEEAELHTTADDAKSLTMASMEKKLIIK 420 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL++ G++ + A LGI+ +L K+ + Sbjct: 421 ALQRANGHRGKTAELLGISPASLWRKIKK 449 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 633 bits (1634), Expect = e-180, Method: Composition-based stats. Identities = 191/494 (38%), Positives = 289/494 (58%), Gaps = 59/494 (11%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L+VDD+++ +LQA+L+ GY VA A G +ALE + ++ D+V+ D++M ++ G+ Sbjct: 3 KVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGLG 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT-- 124 L+ + + P PV+I+TA+ ++ETAV+ALK GA DY+ KP D D L + +EKA+ Sbjct: 63 LLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTRIK 122 Query: 125 HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 + + ++G+VG S ++ + I VA ++ T+LI G++GTGKEL+A AIH Sbjct: 123 NHGEVILAEEEIDKYGIVGCSEKIREIYKTIEKVASTKTTILITGETGTGKELIAHAIHR 182 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 S R + + +NC A+ ++L+E+ELFG+EKGAFTGA + G+F AD GT+FLDEIG+ Sbjct: 183 GSPRKDNAYIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQGTIFLDEIGE 242 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 I MQV+LL+ +Q++ +RVG + I VDVR+IAAT+RDL E+ G FR+DLYYRLNV Sbjct: 243 IPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFREDLYYRLNV 302 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 V I++P LR+R+EDI L +FL RF ++ +KG PQ ++ Y+WPGNIRELEN Sbjct: 303 VPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECFKKYNWPGNIRELENL 362 Query: 365 VERAVVLLTGEYISERELPLAI---ASTPIPLGQSQDIQP-----LVEVE---------- 406 +ER ++L G IS ++P I +P + + P L E+E Sbjct: 363 IERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFEEYLLREMENFTERLVLMA 422 Query: 407 ---------------------------------------KEVILAALEKTGGNKTEAARQ 427 K++I LE+ GN T AA++ Sbjct: 423 RSEKKREAGDRLEEDSLDSTEKDQGVYRKFIKSKTAEVEKKMIEKILEECSGNITHAAKR 482 Query: 428 LGITRKTLLAKLSR 441 LG +RK L K+ + Sbjct: 483 LGFSRKGLQIKMVK 496 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 633 bits (1633), Expect = e-180, Method: Composition-based stats. Identities = 189/450 (42%), Positives = 280/450 (62%), Gaps = 14/450 (3%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL+VDD+ ++ +L LL G++V A++ AL+ + + DL++ D++M M GI Sbjct: 2 AHILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQIDLIISDLKMPRMSGI 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L+ + +P +++TAY++V+TA++A+K GA DYL+KP D + + T++KAL ++ Sbjct: 62 DFLRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKALDYSK 121 Query: 126 SIDAE----TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + +VG SPAM+ L ++IA VAP++ ++LI G+SGTGKELVA+A Sbjct: 122 LQNENWLLRRELEQNRDRTLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQA 181 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S RS K LV++NCAA E+LLESELFGHE+GAFTGA +R++G +DGGTLFLDE Sbjct: 182 LHRLSPRSNKALVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLDE 241 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG+ +Q +LLR +QE+ +RVG IS D+R+IAATHR+L + G FR+DLYYR Sbjct: 242 IGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYR 301 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV++ +P LR RREDIPLL+ FL+R + + + QA L HY+WPGN+REL Sbjct: 302 LNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVREL 361 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP----------LVEVEKEVIL 411 +N +ER ++ G + + LP S + L +E+++I Sbjct: 362 QNILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGCSETAAMPLQQPLPEHLETIEQKLIQ 421 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AAL G + +AA LGI+R L KL + Sbjct: 422 AALIDARGVQAKAAELLGISRSNLQYKLKK 451 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 632 bits (1632), Expect = e-180, Method: Composition-based stats. Identities = 185/445 (41%), Positives = 280/445 (62%), Gaps = 11/445 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDD+ S C L +L GY V SG +A+ + E + +VL D+ + +DG+ Sbjct: 4 SILIVDDEESICKSLGDILVDEGYEVQTVQSGEEAIRLLDEDLPGIVLLDIWLPGIDGME 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK IK+L+P +PV++M+ + ++ETAV+A K GA D++ KPL + + TL+ AL + Sbjct: 64 VLKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSLEKIILTLKHALDLSRL 123 Query: 127 IDAETPAVTA--SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 + + + GKSP + L+ I++VAP+ A +LI G++GTGKELVARAIH Sbjct: 124 EEENVLLKQKINRDYELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVARAIHR 183 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 S R++KP+V +NCAA+ E L+ESELFGHEKGAFTGA +++ G+F A GT+FLDE+ D Sbjct: 184 QSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFLDEVAD 243 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 +S Q ++LR +QE++ +RVG N++I +DVR++AAT++DL E+ GRFRQDL+YRLNV Sbjct: 244 MSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLFYRLNV 303 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 + ++VP LR R+EDIPLLA FL FA + + K A+ LL+ + WPGN+REL+N Sbjct: 304 IPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLMEHSWPGNVRELKNF 363 Query: 365 VERAVVLLTGEYISEREL-PLAIASTPIPLGQSQDIQPLV--------EVEKEVILAALE 415 +ER ++ T I+ ++ PL + + + L + EK+ I L Sbjct: 364 IERLAIMTTSNVITVHDIPPLPRDGHKVEPFREPGFELLAGSFREAKMDFEKQYISRKLR 423 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 + GN ++ A +G+ R L K+ Sbjct: 424 EFDGNISKTAESIGLERSNLHKKIK 448 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 632 bits (1631), Expect = e-180, Method: Composition-based stats. Identities = 200/444 (45%), Positives = 285/444 (64%), Gaps = 10/444 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV-FDLVLCDVRMAEMDGI 65 ILVVDDD + + LL+ GY +G A+E++ + + +VL D M EMDGI Sbjct: 3 KILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPEMDGI 62 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L +IK +N AI V++MT+Y +V +AVEA+K GA DY+ KP D L +EK L Sbjct: 63 QLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKIL-QMQ 121 Query: 126 SIDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 ++ E + + ++G+SP ++ + I+ V+ +EA +LI G++GTGKELVA Sbjct: 122 RLEGEVDRLRSELGEKYTFGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELVA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 +AIH +SAR+ V ++C++L E+LLESELFGHEKGAFTGA K R GRF +AD GT+FL Sbjct: 182 KAIHYNSARNNHRFVKVDCSSLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIFL 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG+IS +Q +LLR +Q+ E + VGS++ I VDVR+IAAT+ DL V G FR DL+ Sbjct: 242 DEIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLF 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNV+ I +P LR+R EDIPLLA HFL ++NRK V+GF+ +++L Y WPGNIR Sbjct: 302 YRLNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNRKTVEGFSRDTLNILTSYAWPGNIR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI--QPLVEVEKEVILAALEKT 417 ELEN +ERAV+L I+ ++PL G S + L + E+++I+ LE Sbjct: 362 ELENVIERAVILCKKNRITPEDVPLYQEKMGTRPGLSGKPLQELLEQTERQIIINTLEAN 421 Query: 418 GGNKTEAARQLGITRKTLLAKLSR 441 +K + A+ L I+R +L KL++ Sbjct: 422 DADKEKTAKILKISRASLYNKLNK 445 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 631 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 174/445 (39%), Positives = 277/445 (62%), Gaps = 12/445 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 I++V+DD + + LR +GY + G +AL + ++FD+ + D+++ +DG+ Sbjct: 4 KIIIVEDDPAMRLGMNHFLRAYGYEATSCDDGAKALSILDSEIFDIAIVDLKLPGVDGLT 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK IK ++P V+I+TA++ V+TAV+A+K GA DY+ KP + L +E+ L + Sbjct: 64 LLKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLKF-RT 122 Query: 127 IDAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ E ++ G+V S M+ + +I VA ++ VLI G+SGTGKEL+A Sbjct: 123 LEKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIAN 182 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AI S R EKP + +NCAA+ E+L ESELFG+EKGAFTGA + ++G+F A+GGT+F D Sbjct: 183 AIQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFFD 242 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ +Q +LLR I++ V R+G + I ++VR I AT ++L + A +FR+DL+Y Sbjct: 243 EIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLFY 302 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 R+NV+ I +P L++R+EDIP+L FL+ F+E+ K +P A + L+ YD+PGN+RE Sbjct: 303 RINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYPGNVRE 362 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPI-----PLGQSQDIQPLVEVEKEVILAALE 415 L++A+ERA++L I + LP + + + + EK +I+ AL+ Sbjct: 363 LKHAIERALLLSKDGVIDIKHLPEEFSPLSSFQKKCFISNFSLKECIENFEKNLIIKALQ 422 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 + G KTEAA++LGI+RK L K+ Sbjct: 423 ECGWKKTEAAKKLGISRKALWEKIK 447 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 631 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 191/454 (42%), Positives = 280/454 (61%), Gaps = 19/454 (4%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD++S L+ LL G+ V A G AL ++R++ FDL++ D+RM +G+ Sbjct: 3 RILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMPPPNGLE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L + + L P +PV+++TA++S + AV A+K GA DYL KP D ++ + AL+ Sbjct: 63 LLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALSSRRQ 122 Query: 127 IDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + T + G++G SP M + I VAP++A VLIHG+SGTGKELVAR Sbjct: 123 LPEPTLKTNSEVPANGGFVGIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKELVAR 182 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH S + V + C+A+ ESL ESELFGH KGAFTGA R G F +A+ GT FLD Sbjct: 183 AIHQLSPAVQHQFVPIICSAIPESLFESELFGHAKGAFTGATTNRTGLFEQANYGTAFLD 242 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG+++P+ Q +LLR +QERE++RVG + I ++ R+I+AT+RDL EV AGRFR+DL+Y Sbjct: 243 EIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMISATNRDLEEEVAAGRFREDLFY 302 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL VV I VP LR+R+ D+PLL HFL +++ K ++ + A++LL++YD+PGN+RE Sbjct: 303 RLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKDIRKISSYALELLMNYDFPGNVRE 362 Query: 361 LENAVERAVVLLTGEYISERELPLAIA---STPIPLGQSQDIQ----------PLVEVEK 407 LEN +ER V + + I L L P P ++ L + E+ Sbjct: 363 LENIIERGVAMENSQIILPESLTLTGRRHGGQPAPADDRGSLEADVFNRGLEPALTDFER 422 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++I+ AL+K G +KT AA L + ++L K+ + Sbjct: 423 QMIIKALQKAGNSKTRAAELLNTSFRSLRYKIKK 456 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 631 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 197/443 (44%), Positives = 270/443 (60%), Gaps = 6/443 (1%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 ILV+DD+ + LQ L GY V A G +E + DL++ D++M M G Sbjct: 2 KFSILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPRMSG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 L+ + A+ P IP++I+T + +VE AVEA+ GA D+L KPLD + L + +AL + Sbjct: 62 ELVLQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRALQNR 121 Query: 125 HSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 I + S +VG+SPAM + + A S+A+VLI G+SG GKEL+A Sbjct: 122 ELIVQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELIA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 AIH S R KPL+ ++CA+ E +LESELFGHE+GAFTGA R +GRF A G++FL Sbjct: 182 NAIHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEGSMFL 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++S +Q++LLR +QER +RVG + I VDVR+I+AT+R+L E+ FR+DLY Sbjct: 242 DEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFREDLY 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVV I VP+LR+R+ED+PLL FL+ AE N K + PQA L YDWPGNIR Sbjct: 302 YRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWPGNIR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-PLVEVEKEVILAALEKTG 418 +L N +E AV++ +G I +L I S I + + EKE+IL LE Sbjct: 362 QLRNCIESAVIMSSGPVIHIEDLSEPIRSLGETSSIRIPIGVSMEDAEKEIILQTLEAQK 421 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 GNK++ A LGI RKTL KL + Sbjct: 422 GNKSKTADVLGIGRKTLYLKLDQ 444 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 216/451 (47%), Positives = 293/451 (64%), Gaps = 12/451 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 +++ILVV+D S +L+ L G+ V A SG +A++ + FDLVL D +M M Sbjct: 1 MKSLNILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ L+E+K LNP V+I+TAY ++ETAV+A+K GA+DY+ KPL+FD L L++ Sbjct: 61 DGMQVLQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLDRVAE 120 Query: 123 HT------HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + + + ++ S M L S A VA S ATVL+ G+SGTGKE Sbjct: 121 RRTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+AR IH S RS +P++T+NC AL ESL+ESELFGHEKGAFTGA RR GRF EADGGT Sbjct: 181 LLARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIG+++ +QV+LLR +QERE QRVG N I DVR+I+AT+RDL V +FR+ Sbjct: 241 LFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNVV + +P LR+RREDIP L HFL+RFA N K + G + +A DLL+ YD+PG Sbjct: 301 DLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPL------AIASTPIPLGQSQDIQPLVEVEKEVI 410 N+RELEN +ERAVV+ E I +LP A + G+ + + +EK++I Sbjct: 361 NVRELENIIERAVVIARNEIIYMEDLPFREDTLVATSGGVPEEGEGRLRGAIENLEKQMI 420 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 A+EK G ++T AA LG++ + L KL + Sbjct: 421 QDAMEKAGDHQTRAAEMLGLSERMLRYKLKK 451 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 630 bits (1627), Expect = e-179, Method: Composition-based stats. Identities = 199/445 (44%), Positives = 283/445 (63%), Gaps = 6/445 (1%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 +LVVDD + LLR G+ V A G A ++V+ + FD+VL D+RM Sbjct: 25 PPTGGKVLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMPT 84 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG+ L+ ++ +P V++MTAY ++E+AVEA++ GA D+L KP + + KAL Sbjct: 85 VDGMEVLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVAKAL 144 Query: 122 AHTHSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + AE +VG+SPAM+ +L + VAP++ATVL+ G+SGTGKE Sbjct: 145 EKRRLLGEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKE 204 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARA+H +S RS+KP V +NCAA+ ++LLESELFGH +GAFTGA + R G F EA+GGT Sbjct: 205 LVARALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGT 264 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LF+DEIG+ SP Q +LLRA+QE E++RVG + + V+VR+IAAT++DL + RFR+ Sbjct: 265 LFIDEIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFRE 324 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNVV + +P LR+RRED+PLLA HFLQRF +R + TP+A+ L+ +DWPG Sbjct: 325 DLFYRLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSE-RVLTPEAVASLVAHDWPG 383 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK 416 N+RELEN +E+A L TG I ++ + + P + + E+ I AAL + Sbjct: 384 NVRELENIIEQAAALCTGREIRAADVQIEARAAPAGGAGVTLADAVEDTERRAITAALAR 443 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 G + AR LGI+ TL K+ R Sbjct: 444 CGNDLGRVARDLGISGTTLWRKMKR 468 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 190/455 (41%), Positives = 271/455 (59%), Gaps = 18/455 (3%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 + ILVVDD+ +L Y V A G +AL++V E +D+++ DV M +MDG Sbjct: 2 SARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L+ +K +P I V++MT S ++TAV+A+K GA DYL KP D D L+ + +AL Sbjct: 62 LEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALERR 121 Query: 125 HSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + T ++G SP MQ + IA AP+ +TVLI G+SGTGKE++A Sbjct: 122 QLMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEMIA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH +S R ++P VT++C L+E+LLESELFGH KG+FTGA + G F A+ GTLFL Sbjct: 182 RAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTLFL 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DE G+I Q +LLR IQERE + VG+ +VRLI AT++DL A V G FR+DLY Sbjct: 242 DEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFREDLY 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YR+NV I P+LR+RR+DIP LA HFL+ F K V + AM LL++Y WPGN+R Sbjct: 302 YRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLMNYGWPGNVR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTP---IPLGQSQD----------IQPLVEVE 406 ELEN ++RAV+L + I + L I ++P + + ++ D + + EVE Sbjct: 362 ELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDELKRIKKIAREKSVEEVE 421 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 K + L++ N T +A + G+ R A + + Sbjct: 422 KLFVQETLKRNASNVTRSAEETGMQRTNFQALMKK 456 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 629 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 187/471 (39%), Positives = 266/471 (56%), Gaps = 37/471 (7%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDDD L Y V NSG ALE V + FDL+L D +M +G+ Sbjct: 6 KILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGREPFDLILLDYKMPGKNGLE 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 TLKEI+ L P+++MTAY +++TA+EA+K GA DYL+KP D + L+ AL Sbjct: 66 TLKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLERIARDALEVNRL 125 Query: 127 IDAE---------TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 + + V + ++G MQ + I VA + TVLI G+SGTGKEL Sbjct: 126 MKEVVSFPAHSLTSARVPKGEIKIIGNHTRMQEVYKLIGQVANKDVTVLITGESGTGKEL 185 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARA++ S R KP + +NCAA+ E+L ESELFG+E+GAFTGA++ G+F GGTL Sbjct: 186 VARALYHHSDRKNKPFLGVNCAAIPETLFESELFGYERGAFTGAERTHIGKFERCHGGTL 245 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 F DEI ++ Q +LLRA+Q E++RVG+ Q + VDVR++ AT+++L V GRFR+D Sbjct: 246 FFDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVATNKNLERAVEQGRFRED 305 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LY+RL +++I +P LR+R EDIP L +FL RF E + ++ A+ L + WPGN Sbjct: 306 LYWRLKIISIHLPPLRERPEDIPALVDYFLVRFGEEYKSPIRRIEDGALAKLKSHAWPGN 365 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKE--------- 408 +RELEN V RAVVL +G+ I E L + P D P VE++ Sbjct: 366 VRELENTVRRAVVLSSGDVIREEHLRFD-SGGHEPSSPEWDKNPWARVERKLEELIPDLL 424 Query: 409 ------------------VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++ LE+ G N+ +AAR LG++R TL ++ + Sbjct: 425 QVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTLRHRMKK 475 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 629 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 185/450 (41%), Positives = 285/450 (63%), Gaps = 16/450 (3%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL++DDD + +++ + + G+ SG++ALE + LV+ D+RM ++ G+ Sbjct: 2 ARILIIDDDPAMVSVISDICQERGHQTVAYASGQKALESLAVHAPQLVITDLRMDKVGGL 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L+E + + P PV+++TAY +VETA+EA+K GA DY+ KP D LQ T+++AL + Sbjct: 62 DILRECREVLPQTPVILITAYKTVETALEAMKLGAYDYITKPFKVDELQLTIQRALDNQS 121 Query: 126 SIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + ++G S MQ + + IA VA +++T+LI G+SGTGKELVAR Sbjct: 122 LVRENRNLRQIVKEKYRFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVAR 181 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H +S R +P V +NC+AL E+LLESELFGH+KG+FTGA + + G F EA+GGT+FLD Sbjct: 182 ALHFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFLD 241 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ ++ +Q +LLR +QER+++RVG + + ++VR++AAT+ L ++ G FR+DLYY Sbjct: 242 EVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYY 301 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL V+ +E+P+LR+R +DIPLL HFLQ+ A + K P+A+++L Y WPGN+RE Sbjct: 302 RLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVRE 361 Query: 361 LENAVERAVVLLTGEYISERELPLAI----------ASTPIPLGQSQDIQPLVEVEKEVI 410 LENAVERA L I +LP + S +P+GQ+ D + + E E+ I Sbjct: 362 LENAVERACALCDDALIRTTDLPPQVIRHATAPPVEHSGTLPVGQTLD-EYIREQERRYI 420 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 ++ G ++ +AA+ LGI+ TL KL Sbjct: 421 EETIKFNGNSREKAAKMLGISMATLYRKLE 450 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 627 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 188/448 (41%), Positives = 279/448 (62%), Gaps = 11/448 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 I+V DD+ ++ LL+ GY V A +G++A++ + D++L D +M + G Sbjct: 2 KAKIVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLTG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L++IK L P V+ +TA+ SV AV+A+K GA D++ KP D D L T+ +A+ H Sbjct: 62 VEALEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSRAVEHC 121 Query: 125 H---SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 I + G++G+ ++ ++ ++ VA ++ATVLIHG+SGTGKEL+A A Sbjct: 122 RMKGEIKHLKNKLGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWA 181 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R +P V +NC A+ +L+ESELFGHEKGAFT A + + G F A+GGTLFLDE Sbjct: 182 IHDRSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDE 241 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ QV+LLR ++ER++ R+G + I V+VR++AAT+R+L EV G+FR DL YR Sbjct: 242 IGELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYR 301 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV I++P LR+R+EDIPLLA FL++ +++ TP+AMD L YDWPGN+R+L Sbjct: 302 LNVFTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAYDWPGNVRDL 361 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPI----PLGQSQDIQPLVE----VEKEVILAA 413 ENAV+ A++L I LP I S + ++++ L + EK IL+A Sbjct: 362 ENAVQSAMILCVDRQIHPGHLPARIKSYQMERLTAPQEAEEDTSLRDTNSLAEKARILSA 421 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 L+K N+T A L I+RKTL K+ R Sbjct: 422 LQKHNYNRTLTAEALNISRKTLFNKMKR 449 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 626 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 211/456 (46%), Positives = 291/456 (63%), Gaps = 17/456 (3%) Query: 1 MTHDN--IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVR 58 M +N +L+++D+ L L ++ A+ A+ + + D+VL D+R Sbjct: 1 MNRENDFPKLLIIEDEKRTRMGLVMALGEE-FDTYEASDLSSAMAILENEPIDIVLADIR 59 Query: 59 MAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE 118 + + G L+++K+L L MTAY SVE AVEA+K GA DY+ KPLD + L+ TL+ Sbjct: 60 LGKESGFEILRKVKSLPFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITLK 119 Query: 119 KALAHTHSIDAETPAVTASQ------FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 + + + ++ E + ++G S AM+ + +I VA S+ATVL+ G+SG Sbjct: 120 R-IYQSRKVEVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESG 178 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKELVA AIH S R P V ++CAAL+ LLESELFGHEKGAFTGA +RR GRF EA Sbjct: 179 TGKELVAHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEA 238 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 GTLFLDEIG+I QV+LLRA+ E+ +QRVGSN++++VDVR+IAAT+++L V G Sbjct: 239 ARGTLFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEG 298 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 +FR+DL++RLNVV I +P LR+R+EDIPLLA FL FA N K + +P+AM +L+ Y Sbjct: 299 KFREDLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEY 358 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIA------STPIPLGQSQ-DIQPLVEV 405 DWPGN+REL+ A+E VVL GE I R+LP I S PI + S+ D L E Sbjct: 359 DWPGNVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFNLKEA 418 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EK +IL AL G KT AA++LGI+RKTL K+ + Sbjct: 419 EKRLILHALRVCQGKKTSAAKKLGISRKTLQRKIKQ 454 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 199/445 (44%), Positives = 278/445 (62%), Gaps = 9/445 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 ILVVDD+IS L+ +L+ GY + +A SG +ALE++R DL+L D+ M MDG Sbjct: 2 KPKILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 +A L+EIK + +PV+I++ + ++ETAV+A + GA D++ KPL + + +++ AL Sbjct: 62 LAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALDFH 121 Query: 125 HSIDAETPAVTASQ--FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + + M G+S A++ L +I AP+ ATVLI G++GTGKEL AR I Sbjct: 122 RLEEENLLWRQKAHRTSHMTGRSEAVESLREQIRRAAPTNATVLITGENGTGKELAARMI 181 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S RS +P+V +NCAA+ E L+ESELFGHEKGAFTGA +RR GRF A+GGTLFLDEI Sbjct: 182 HQLSKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANGGTLFLDEI 241 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+S Q ++LR +QE+ +RVG ++ I VDVR++AAT++D+ E+ AGRFRQDLYYRL Sbjct: 242 GDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRFRQDLYYRL 301 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ I VP LR R +DIPLL FL A + K P L Y WPGNIREL Sbjct: 302 NVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQYSWPGNIRELR 361 Query: 363 NAVERAVVLLTGEYISERELPLA-IASTPIPLGQSQDIQ--PLVE----VEKEVILAALE 415 N +ER V++ G+ I R+LPL + P P ++ Q L E E+ +L L+ Sbjct: 362 NFIERMVIMTPGQRIGPRDLPLDFLNRLPKPPEEAGPYQCATLREARSVFERAYLLRKLD 421 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 + N + A Q+G+ R L K+ Sbjct: 422 EFAWNVSLTAAQVGLERSHLHRKMK 446 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 184/457 (40%), Positives = 271/457 (59%), Gaps = 22/457 (4%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 N +L+VDD+ L+ +L GY VA A +G + L+ E DL+ D+ + MDG Sbjct: 2 NARVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L ++ + ++PV++++ + ++ETAV A+K GA D++ KPL + + + KAL + Sbjct: 62 LEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEYY 121 Query: 125 HSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + E A+ + + M G S ++ L +I VAP++A VLI G++GTGKE+ A Sbjct: 122 R-LRRENQALRSRLTQSTTVEMTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIAA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 R+IHASS R +KPLV +NCAA+ E L+ESELFGHEKGAFTGA+ + G+F A GTLFL Sbjct: 181 RSIHASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAETAKTGKFEMAHQGTLFL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEI D+S Q ++LR +QE+ +RVG ++ + VDVR+IAAT++ L E+ AGRFR+DLY Sbjct: 241 DEIADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGRFREDLY 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL V+ + VP LRQR +D+ LL G F+ R + F P A L+ Y WPGN+R Sbjct: 301 YRLRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVTFAPDACSALLCYHWPGNVR 360 Query: 360 ELENAVERAVVLLTGEYISERELPLA-------IASTPIPLGQSQDIQP---------LV 403 EL+N VER +++ +G+ ++ LP I P G S + P Sbjct: 361 ELKNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMIPEGVMDFKAART 420 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 E + A L++ GGN T A +G+ R L KL Sbjct: 421 AFEARFLEAKLQEFGGNITRLAEAIGLERSYLYRKLK 457 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 624 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 205/445 (46%), Positives = 280/445 (62%), Gaps = 8/445 (1%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 IL+V+DD L +L GY V +SG +ALE++R+ FDLV+ D+++ MDG Sbjct: 3 KYTILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGMDG 62 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + LK IK + I +I+TAY +V+TAV A+K GA DY++KP D + L+ +EK L Sbjct: 63 MEVLKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLEKR 122 Query: 125 -----HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + + + +VG S +M + I V S +TVLI G++GTGKELVA Sbjct: 123 GLFLDNLRLQQQLEKKYTFENIVGTSESMMGVFKTINRVKESRSTVLIRGETGTGKELVA 182 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH +SAR+ KP + +NCAALNE L+ SELFGH KGAFTGA + G F ADGGTLFL Sbjct: 183 RAIHFNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVADKRGLFEAADGGTLFL 242 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ +Q LRA+++ E+Q VGS Q V VR+IAAT+++L A V G FR+DLY Sbjct: 243 DEIGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAMVEQGGFRKDLY 302 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVV I++P LRQR+EDI LLA HFL ++A +N K ++G P+A+ LL +Y WPGN+R Sbjct: 303 YRLNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNKNIRGIAPRALRLLENYSWPGNVR 362 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPI---PLGQSQDIQPLVEVEKEVILAALEK 416 ELEN +ERA + + I+ LP + P S + L V + I+ LE Sbjct: 363 ELENIIERATLFELTQEITPDSLPQVVIEPCTVLDPSPFSMETTSLEAVSRRHIVRILEM 422 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 T NKT+A++ LGI R TL ++R Sbjct: 423 TNHNKTQASKLLGIDRSTLWRIMNR 447 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 191/445 (42%), Positives = 285/445 (64%), Gaps = 10/445 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDD+ IL+ +LR GY++ +ALEQ+ + FDL+L D++M G+ Sbjct: 9 SILIVDDERGQRDILKLILRKEGYDIVDVPGVGEALEQLDRREFDLILTDLKMQGQSGLD 68 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA-----L 121 L+ + + +P V++MTA+ SV++AVEA++ GA DYL KPL+ DNL TL++A L Sbjct: 69 LLERVLSDDPQQCVILMTAHGSVDSAVEAMRMGAFDYLEKPLERDNLVLTLQRAFERIGL 128 Query: 122 AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + + + A T M+G P M + +A +A + +TVLI G+SGTGKELVARA Sbjct: 129 VRENRVLQKRVASTTPIPSMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKELVARA 188 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R + P + +NCAA+ E+L+ESELFGHEKG+FTGA R G F A+GGT+FLDE Sbjct: 189 IHEGSQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAHARELGVFEAANGGTVFLDE 248 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG+++ MQ +LLRAIQE+EV+RVG I +DVR+I+AT+++L E+ G FR+DLYYR Sbjct: 249 IGEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFREDLYYR 308 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV+ I +P LR+R D+ LA F+++++ V+G + A+ LL++Y WPGN+R+L Sbjct: 309 LNVIRINLPPLRERGSDVKTLAEFFVKKYSLATGIDVEGISRPALKLLMNYSWPGNVRQL 368 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTP-----IPLGQSQDIQPLVEVEKEVILAALEK 416 E+ +ERAV++ I +LP I ST +P + + +EK +I+ A+E+ Sbjct: 369 ESVIERAVLMAESSVIEPGDLPAEITSTSLLAGVVPFDLPPEGIDMETLEKNLIIKAMER 428 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 +AA LG++ KTL +L + Sbjct: 429 ADWVIGKAAPLLGMSYKTLQYRLEK 453 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 180/462 (38%), Positives = 276/462 (59%), Gaps = 22/462 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILVVDDD S L L GY + A++G +AL++ R+ F+ V+ D+RM Sbjct: 1 MEMKEARILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M G+ LK IK ++P PV+++TAY +V TAVEA+K GA D+++KP ++++ ++ Sbjct: 61 GMGGMEVLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNV 120 Query: 121 LA--HTHSIDAETPAVTAS--QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 +A P + ++ + + +L + VA S+++VLI G+SGTGKE Sbjct: 121 MATYEEKEFRESKPVEKMTFTDREIITEDEKILGILEFLKTVAQSKSSVLIQGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L AR ++ S+R P V +NCAA+ ++LLESE+FG EKGAFTGA +R+ G+F A+GGT Sbjct: 181 LFARYLYLHSSRRHMPFVAINCAAIPDNLLESEMFGFEKGAFTGAIQRKVGKFELANGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 L LDE+ +++P +Q +LLR IQE+E+ R+G + VDVR+IA T+ D+ + FR+ Sbjct: 241 LLLDEVTEMTPHLQAKLLRVIQEKEIDRLGGKMPLPVDVRIIATTNADVRKCIEEKTFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNV+ +++P LR+R+ D+ LL +FL++++ N K + F + L YDWPG Sbjct: 301 DLYYRLNVIPLKIPPLRERKGDVELLGSYFLKKYSNLNEKPLPVFANGTLKRLNAYDWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV------------- 403 N+RELEN +ERAV++ G + L L + P + + L Sbjct: 361 NVRELENVIERAVLVCGGNVVLPEHLYLEDQGSVSPAAEEKTSCSLEEVSTDISGIDLSR 420 Query: 404 -----EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 E+EKE+I + L+K GNKT A+ LGI+ +T+ KL Sbjct: 421 GMTIWEMEKELIFSTLDKVKGNKTRASEILGISVRTMRNKLQ 462 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 623 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 204/480 (42%), Positives = 277/480 (57%), Gaps = 40/480 (8%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 T ILVVDD+ L L G+ A +G +ALE + FDLVL D+ M Sbjct: 33 TPGPARILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQG 92 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 MDG+ L+ ++ +P V+++T Y +V+TAVEA+ GA YL KP D + +A ++KAL Sbjct: 93 MDGLDLLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKAL 152 Query: 122 AHTHSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 E + ++G +P MQ L IA VAPS+ TVLI G++GTGKE Sbjct: 153 EKRRLRQEVARLREQLRERSLPVPLLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKE 212 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L AR +H S RSE + +NC A NE LLESELFGHE+GAF+GA ++R+G F A+GGT Sbjct: 213 LAARMVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAEGGT 272 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDE+G++S MQV+LLRA+QER ++RVG I VDVRL+AAT++DLAAE AGRFR Sbjct: 273 LFLDEVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGRFRH 332 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNVV + +P L +R ED+PLLA +F ++ A + P+ + +L Y +PG Sbjct: 333 DLYYRLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYPFPG 392 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIA----------------------------- 387 N+REL N +ERA VL G+ I+ +LP + Sbjct: 393 NVRELHNIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALVLRADE 452 Query: 388 STPIPLGQSQDIQP------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + +P G + + P L E E+ I LE GGN+T AA+ L I R +L KL R Sbjct: 453 AARMPGGAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKR 512 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 192/459 (41%), Positives = 270/459 (58%), Gaps = 26/459 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 + VVDDD S +L+ L G G +G + LE + + D++L D+RM MDG+A Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK+IK +P +PV+IMTA+S ++ AV A + GA DYL KP D D A +E+A++H Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 Query: 128 DA-ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 + ++G++PAMQ + I ++ S +VLI+G+SGTGKELVA A+H S Sbjct: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 R++ P + LN AA+ + L+ESELFGHEKGAFTGA+ R+GRF +ADGGTLFLDEIGD+ Sbjct: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 +Q RLLR + + + RVG + VDVR+IAATH++L V G+FR+DL++RLNV+ Sbjct: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 + +P LR+RREDIP LA HFLQ A K P+ L WPGN+R+LEN Sbjct: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 Query: 367 RAVVLLTGEYISERELPLAIASTPIPLGQSQ-------------DIQPLV---------- 403 V+ G+ + ++LP + + + SQ + L Sbjct: 366 WLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLSEA 425 Query: 404 --EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 E+E+ ++ AL T G+K EAAR LG R TL KL Sbjct: 426 QPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 191/451 (42%), Positives = 285/451 (63%), Gaps = 16/451 (3%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 ILVVDD+ T L+ +L G GY V A +GR A++ + + FD+V+ D++M DG Sbjct: 2 ARILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMELADGY 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 LK+++ + PV+I+TA+ S+++AVEA+K GA DY++KP ++++ T+ L H Sbjct: 62 DVLKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNILEHG- 120 Query: 126 SIDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 S+ E A+ +VG S AM + I AP++A ++I G+SGTGK L+A Sbjct: 121 SLRLENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEKAAPTKANIMITGESGTGKGLLA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 A+H +S R +KP + +NCAA+ E+LLESELFG++KGAFTGA+ + G ADGGTLFL Sbjct: 181 EAVHQNSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITMADGGTLFL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ ++Q ++L+ ++ EV +G + +VD+R+I+AT++DL + + FR+DLY Sbjct: 241 DEIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIREKTFREDLY 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNV+ I +P+LR+RREDIPLLA F++ K VKGF AM ++ Y WPGN+R Sbjct: 301 YRLNVIEIRMPALRERREDIPLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMAYPWPGNVR 360 Query: 360 ELENAVERAVVLLTGEYISERELPLAIA-----STPIPLGQSQDIQPLV----EVEKEVI 410 EL+N VERAV+ GE I+ ELP I + P + +QPL + EK++I Sbjct: 361 ELKNVVERAVIFAGGEQITPAELPAKIRRGDATAGPGGNTEVSGLQPLKAMVYDYEKDII 420 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + AL + G+K A+ LGI TL K+S+ Sbjct: 421 INALNRFDGSKEMVAKTLGIDLTTLYRKMSK 451 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 183/439 (41%), Positives = 279/439 (63%), Gaps = 9/439 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL++DD+ S +++ +L G+ V A S +++L + ++ FDL++ D + + G+ Sbjct: 2 FKILLIDDEESILKVIKTVLSEAGFEVLTAKSKKESLSLIEKEKFDLIISDFLLEDGTGL 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L+ + + P LI+TAY S+ AVEA+K GA Y+ KP+D DNL ++ + Sbjct: 62 EILESFRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPIDIDNLIKIIDFYIKKQE 121 Query: 126 SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 + D E G++GKS M+ L EI +V+ SE+++LI G+SGTGKELVA+AIH Sbjct: 122 NFDVE-----EEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRR 176 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S R+ +P + +NC+A+ L E+ELFGHEKG+FTGA R G+ A GTLFLDEIG++ Sbjct: 177 SKRANQPFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEM 236 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 MQ +LLR +QERE RVG ++I + R+I+AT+R+L V FR+DL+YR+NV+ Sbjct: 237 PLFMQAKLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVI 296 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 +++P LR+R+EDIPLL F+ +F++ N K V A+++L++YDWPGN+R+LEN + Sbjct: 297 HLKIPPLRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENII 356 Query: 366 ERAVVLLTGEYISERELPLAIASTPIPLGQ----SQDIQPLVEVEKEVILAALEKTGGNK 421 ERAVVL GE I+ LP I S + + + L ++EK +IL L++ N+ Sbjct: 357 ERAVVLCQGEIITANHLPDRIKSNSQKISENIRSENNSLNLYDIEKNIILKVLQEENFNQ 416 Query: 422 TEAARQLGITRKTLLAKLS 440 T AA++LGI+RK L K+ Sbjct: 417 TRAAQKLGISRKQLRTKMK 435 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 622 bits (1605), Expect = e-176, Method: Composition-based stats. Identities = 192/463 (41%), Positives = 284/463 (61%), Gaps = 27/463 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M + IL+VDDD + + +R G +V +A G++ E+ + +DL++ D+RM Sbjct: 1 MDLTSKKILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +DG+ + I++ P+ +TA+ +V AV+ALK GA DY++KP + ++ + + Sbjct: 61 NVDGMTMMNMIQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRV 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 L I+ PAV + + +S M L S VA SEATVLI G+SGTGKE+ AR Sbjct: 121 LE----IEETAPAVKRKKNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFAR 176 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH +S RS V +NCAAL E+L+ESELFG+EKGAFTGA R+ G+F ADGGT+ LD Sbjct: 177 YIHENSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLD 236 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+G+I +Q +LLR +QE+EV+R+G + ++VR++A T++ L EV+ G FR+DLYY Sbjct: 237 ELGEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYY 296 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV++IE+P LR+R+EDI LA F +++A+ N K T A+ L+ YDWPGN+RE Sbjct: 297 RLNVISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWPGNVRE 356 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-------------------- 400 LE+ +ERAVVL ISER L L + + Q++ Sbjct: 357 LEHTIERAVVLCRDGVISERNLFLHGITINQFMTDKQELAAADSYTGCETTEDSVSAGID 416 Query: 401 ---PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + E+E+E+I+ L++TGGN+T+AA LGIT +TL KL+ Sbjct: 417 FAGTIAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKLN 459 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 621 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 208/482 (43%), Positives = 285/482 (59%), Gaps = 48/482 (9%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ + L L G+ V LA +GR ALE + +Q DLV+ D+RM EMDGI Sbjct: 4 KILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMDGIE 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH- 125 L++IKA P +PV+I+T Y++VETAVEA+K GA+DY++KP + + T+ K Sbjct: 64 MLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQRQG 123 Query: 126 ---------SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + A PA + Q ++G+ LL VA S+ATVL+ G+SGTGKE Sbjct: 124 EAALGSEGATPAAAVPAAASDQRTVIGRDAHFLRLLERARAVASSKATVLVLGESGTGKE 183 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 + AR IH S R P V LNCAAL E LLESELFGHEKGAFTGA ++G+F +A GGT Sbjct: 184 VFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMSKKGKFEQAHGGT 243 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 L LDEIG++ +Q +LLR +QE EV R+G + + VDV ++A T+RDL A V G FR+ Sbjct: 244 LLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVLATTNRDLGAAVREGNFRE 303 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNV+ I +P++R+R EDI LLA HF++++ R +K K + + + Y WPG Sbjct: 304 DLFYRLNVIPIRLPAMRERPEDISLLADHFIEKYTARYQKPAKKLSAASRQRFLEYQWPG 363 Query: 357 NIRELENAVERAVVLLTGEYISE-----RELPLAIA------------STPIPLGQSQ-- 397 N+RELEN VERAV+L G + ELP A A + P P+ + Sbjct: 364 NVRELENLVERAVLLSAGPELEPWDFWEDELPPAGAVTGATDPELAGSANPEPVAAADLA 423 Query: 398 -------------------DIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAK 438 L +VE+++IL AL +T N+T AA+ LGI+ +TL K Sbjct: 424 LAGSNTDAAASAAEIAIDPSRHSLWDVERQMILRALRQTSDNRTHAAKMLGISVRTLRNK 483 Query: 439 LS 440 L+ Sbjct: 484 LN 485 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 621 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 192/460 (41%), Positives = 287/460 (62%), Gaps = 26/460 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ IL VDD+ S +L+ LR GY A GR+ALE + Q D V+ D+ M Sbjct: 1 MSDSTKYILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG+ LKE++ + +PV+I+TA + +A++A+K GA DY+++P D L+ +++A Sbjct: 61 RMDGLQLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDLAELELAIKRA 120 Query: 121 LAHTHSIDAET--PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 L+ + + A G++G SPAMQHL I VAP +ATVL+ G++GTGKELV Sbjct: 121 LSFSRLVVENRFLREDKADTTGLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELV 180 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARAIHA+S R+ V +NCAA+ +LESELFGHEKGAFTGA K R G+F ADGGTLF Sbjct: 181 ARAIHAASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTLF 240 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDE+ ++ +Q +LLRA+QE ++R+G N+ I+VD+R++AAT+R+ + G+ R+DL Sbjct: 241 LDEVTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDL 300 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYRLNV I++P+L+ R+ DI LLA HFL K + QA+ +L+ YDWPGN+ Sbjct: 301 YYRLNVFRIDLPALKARKSDIELLATHFLA-------KRRVDISAQAVQVLMQYDWPGNV 353 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI-----------------QP 401 RELEN +ERA ++ + I + LP + ++ + + Sbjct: 354 RELENVLERAAIISGNQQIQPQHLPAEMLNSNGEFIDATALGHNADTAEAPQNPLCLPNA 413 Query: 402 LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + ++E+++I AL +T GNK++AA+ L I+ ++L KLS+ Sbjct: 414 VEQLERQLIAKALAQTNGNKSKAAKLLEISERSLWYKLSQ 453 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 621 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 194/465 (41%), Positives = 279/465 (60%), Gaps = 27/465 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M I IL+VDD+ + ++ L GY A S +ALE++ + DL+L D+R+ Sbjct: 1 MKPKGI-ILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++G+ +++IK +P +++MT Y SV++AVE ++ GA DYL KP D L++ +EKA Sbjct: 60 NINGVELIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEKA 119 Query: 121 LAHTHSIDAETPAVTASQFG--------MVGKSPAMQHLLSEIALVAPSEAT-VLIHGDS 171 L + E + Q+ ++G SP M+ + S I VA S +T VLI G+S Sbjct: 120 L-RRQGLRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGES 178 Query: 172 GTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKR-REGRFV 230 GTGKELVARA+H SAR V +NCAAL ESLLE+ELFG+EKGAFTGA + G F Sbjct: 179 GTGKELVARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFE 238 Query: 231 EADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVN 290 AD GT+FLDEIG++ ++Q +LLR +QER+ +RVG Q I +DVR+IA+T+R+L E+ Sbjct: 239 IADKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIA 298 Query: 291 AGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLI 350 +G FR+DLYYRL V+ I VP LR+RREDI LL +F+ ++ K + P +L+ Sbjct: 299 SGNFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILL 358 Query: 351 HYDWPGNIRELENAVERAVVLLTGEYISERELP---------LAIASTPIP------LGQ 395 Y WPGNIREL+N VER V++ G +S + + ++A + Sbjct: 359 EYGWPGNIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNTDCVSSD 418 Query: 396 SQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 D + L +EK+ I L++T +TEAAR LGI R TL K+ Sbjct: 419 GLDARSLAFMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIK 463 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 621 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 194/457 (42%), Positives = 286/457 (62%), Gaps = 22/457 (4%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD++S L+ LL GY V+ A+ G ALE + + +DL++ D+RM +G+ Sbjct: 3 RILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNGLE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L K + P +PV+++TA++S + AV A+K+GA DY+ KP D ++ + AL+ Sbjct: 63 LLVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALSSPQP 122 Query: 127 IDAE----TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + A+ A T G++G SP M+ + I+ VAP+ A VLI G+SGTGKELVARAI Sbjct: 123 LPAKPGESEVAATNEFEGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVARAI 182 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S S V + C+A+ ESL ESE+FGH KGAFTGA R G F +A+ GT FLDEI Sbjct: 183 HRLSPASGHEFVPIVCSAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLDEI 242 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G+++P++Q +LLR +QERE++RVG+ + + +R+I+AT++DL EV AGRFR+DL+YRL Sbjct: 243 GELTPIIQTKLLRVLQEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFYRL 302 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 VV I VP LR+R+ D+PLL HFL ++A K + + AM++L+ YD+PGN+RELE Sbjct: 303 AVVPIRVPPLRERKGDVPLLVDHFLAKYARLFNKDIHRISSYAMEVLLDYDFPGNVRELE 362 Query: 363 NAVERAVVLLTGEYISERELPLAI---ASTPIPLGQSQDIQ---------------PLVE 404 N +ER V + + I L L+ + P P G + D + L + Sbjct: 363 NIIERGVAMENSQIILPESLTLSGHRRSREPEPAGGTVDDKRQEIAEEVFSRGLEPTLAD 422 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +E+E+I+ ALEK G +KT AA L + ++L K+ + Sbjct: 423 LEREMIVNALEKAGNSKTRAAELLRTSFRSLRYKIKK 459 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 197/458 (43%), Positives = 287/458 (62%), Gaps = 17/458 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 ++ IL+ DD + + L G++V G +A+ R++ D+V+ D+RM Sbjct: 24 LSPPMARILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDLRMV 83 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +DGI ++ ++ L+P VL+++A+ ++ AVEA++ GA+D++ KP D L+A +EK+ Sbjct: 84 PVDGIEVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRARVEKS 143 Query: 121 LAHTHSIDA-----------ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHG 169 + E G+VG S M+ +L ++ VA + ATVL+ G Sbjct: 144 IEIARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLG 203 Query: 170 DSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF 229 +SGTGKELVARAIH +S R E+P V+++CAA+ E LLESELFGHEKGAFTGA +R+ GRF Sbjct: 204 ESGTGKELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRF 263 Query: 230 VEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEV 289 A+GGTLFLDE+G+I +QV+LLR +QER+ +RVG + + VDVR+++AT+R+LA V Sbjct: 264 ELANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMV 323 Query: 290 NAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLL 349 +GRFR+DLYYRLNVV I +P LR R D+ LA F+ R A R +AV G P+A++LL Sbjct: 324 ESGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALELL 383 Query: 350 IHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIAST------PIPLGQSQDIQPLV 403 + WPGN+RELEN +E+A+V GE + R+LP + P+P G L Sbjct: 384 RRHRWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPPAPSLPVPSGDRSLTDILE 443 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++E+++ILAA EK G K E AR LGI L KL + Sbjct: 444 DLERQLILAAYEKARGVKAETARLLGIKPSALYYKLEK 481 >UniRef50_A0LM32 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LM32_SYNFM Length = 450 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 202/446 (45%), Positives = 265/446 (59%), Gaps = 11/446 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT + +LVVDD+ L R GY A+ GR ALE V + +DLV D++M Sbjct: 1 MT-GRLKVLVVDDEKIVRESLVEWFRKSGYEADSADGGRSALEMVAGKDYDLVFLDIKMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++ G L IKA P V+++TAY SVETAV+A+K GA DYL+KP D D L LE+ Sbjct: 60 DVSGFEVLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLERL 119 Query: 121 LAHTHSIDAETPAVTASQFGM-----VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L +D GM +G S MQ L + I VA ++ +L+ G++GTGK Sbjct: 120 LQQKKIVDENAMLREHISSGMHCRELIGVSNCMQQLFALIEQVAQVDSPILLRGETGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E+VA+AIHA S R P V +NC A E+LLESELFGHE AFTGA + ++GR A GG Sbjct: 180 EMVAKAIHAMSERRGGPFVPINCGAFAETLLESELFGHESRAFTGAGRAKKGRLEMASGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDE+G+I MQ+ LLR ++E+ RVG ISVD RLI ATH+DLA E+ G FR Sbjct: 240 TLFLDEVGEIPLKMQIDLLRVLEEKAFTRVGGISEISVDFRLICATHKDLAMEIERGAFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 QD YYRLNV+ +E+P L R +DIP+LA FL+R + K V G Q ++ L Y WP Sbjct: 300 QDFYYRLNVIEVEIPPLHARIDDIPVLAQCFLERIGKETNKPVVGIRQQGIEFLKSYPWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALE 415 GN+RELENA+ERAVVL Y++ + S P QS L E EK+ + L Sbjct: 360 GNVRELENAIERAVVLAKERYLTRDDFAFLCRSPAQPFPQS-----LRENEKQHLERILS 414 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 G N ++AA L I+R TL +K+ + Sbjct: 415 FCGWNISKAAAILEISRVTLHSKIRK 440 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 186/445 (41%), Positives = 269/445 (60%), Gaps = 11/445 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L++DD+ + LQ LL GY V A G L Q+ +DLVL D + + +GI Sbjct: 22 VLIIDDEAAIRESLQTLLELEGYQVDTAVDGGDGLMQMAAHPYDLVLLDFALPDRNGIEI 81 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LKEI++ + I V+++TAY +VE AV A++ GA +++ KP D + L A + A+A Sbjct: 82 LKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQKPWDNEKLLADVGAAIARRRVE 141 Query: 128 DAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + A + ++GKS M + + +APS +TVL+ G+SGTGKEL+A+AI Sbjct: 142 EENLQLKRALKQRYNFENIIGKSEPMLRIFDLVTQIAPSRSTVLLQGESGTGKELIAKAI 201 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R ++ V +N ++ LLES LFGH KGAFT A ++G F ADGGTLFLDEI Sbjct: 202 HMNSTRKDRAFVPINTGSMPTDLLESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLDEI 261 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G +S Q ++LR +Q+R+ +G Q I VDVR+IAAT+ DL V G+FR+DL+YRL Sbjct: 262 GTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFYRL 321 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ I++P LRQRR D+PLL HF+++F E N K + TP+A+ L+ Y+W GN+RELE Sbjct: 322 NVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMRMTPEALRPLLDYNWQGNVRELE 381 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLG------QSQDIQPLVEVEKEVILAALEK 416 N +ERAVVL G I+ LP + L + + + + E+ +I+ LEK Sbjct: 382 NVIERAVVLANGPSITIDLLPDNVVGRGSSLSFVETRPDASLFEIMEDCERRIIVDMLEK 441 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 G N+TEAA + I TL K+ R Sbjct: 442 VGWNQTEAAEKFRIPLSTLNQKIKR 466 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 193/440 (43%), Positives = 270/440 (61%), Gaps = 5/440 (1%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + + +VDD+ C L L GY V S R LE + ++ FD+V D+R+ +MDG+ Sbjct: 4 LRVAIVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDMDGL 63 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH-- 123 L +IKAL P V+I+T Y S++TA+EA++ GA Y+ KP++F ++A +A Sbjct: 64 ELLPKIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIARRAQEKIG 123 Query: 124 ---THSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ E ++ +VG SPA+Q L + + VAP + VLI G+SGTGK LVA Sbjct: 124 MRMENARLREALLGSSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKALVAL 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H S R +P VT NC E L+ SELFG+EKGAFTGA + G A GGT+FLD Sbjct: 184 ALHHLSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTVFLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+G++ MQVRLL +QER + RVG + + +D+R+IAAT+RDL AEV G FR+DL++ Sbjct: 244 EVGEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFREDLFF 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV+ +P L RREDIPLL HF+ ++ RK+V+G QA+ L Y +PGN+RE Sbjct: 304 RLNVVSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGNVRE 363 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 LEN +ERAV L G+ I +LP I + + + L EVE+ ++ LEKTG N Sbjct: 364 LENIIERAVALTDGQTIGLLDLPEDIRNLEFATLEGDGLPTLAEVERRYVIRILEKTGYN 423 Query: 421 KTEAARQLGITRKTLLAKLS 440 K AA+ LG+ R TL KL Sbjct: 424 KRLAAQVLGVPRTTLWRKLK 443 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 619 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 186/469 (39%), Positives = 276/469 (58%), Gaps = 30/469 (6%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M H+ IL+VDD+ L +L GY V A SG +A+ ++ D+ L D+R+ Sbjct: 1 MEHN--RILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLP 58 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + DG+ L++ K + + V+++TA + V++AV ALK GA DY+ KP + + L+ ++KA Sbjct: 59 DADGLDLLQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPFNMEALRHVIDKA 118 Query: 121 LAHTHSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEA-TVLIHGDSGTG 174 + + +VG S +M +L I + A ++A TVLI G+SGTG Sbjct: 119 FEKRQLREKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIKVCADTDAKTVLILGESGTG 178 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KELVARAIH SAR+E P +NCAA+ E+LLESELFGHEKGA+T A KRR+G F A+G Sbjct: 179 KELVARAIHNHSARAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKRRKGIFELAEG 238 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GT+FLDEIGD+ MQ ++L+ I+ + +R+G+ + I DVR+IAATH+DL A V RF Sbjct: 239 GTVFLDEIGDMPFSMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDLPAMVKERRF 298 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R DL+YRLNV+ I +P LR+R +DIP L +F++R E + V+G +P+ M L Y W Sbjct: 299 RGDLFYRLNVMNIPLPPLRERTDDIPSLVQYFIERLNEEYGRRVEGVSPETMAYLTGYGW 358 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIAS----------------------TPIP 392 PGN+REL NA+ER ++L ++ L I Sbjct: 359 PGNVRELRNAIERTMMLEHSRILTPVFLNAEIKQQYETAQNKSLHVDSHASAQHSFARGH 418 Query: 393 LGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + L E+E+++I LE +GGN+T+AA+ L ++R TL ++ + Sbjct: 419 ITIPTGGISLEELERQLIRMGLEISGGNQTKAAKYLKMSRDTLRYRMKK 467 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 619 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 188/440 (42%), Positives = 283/440 (64%), Gaps = 5/440 (1%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 T++ +LV DD+ S ++Q +L V A+ G +AL+ QV D L D+RM + Sbjct: 15 TNEKPVVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEALKVSEAQVVDCALVDIRMPK 74 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG+A L+++ + IPV+++TAY + + +EA++ GA D++ KP D D+L + KAL Sbjct: 75 VDGLAVLEQL--VLKNIPVIVITAYGTSDVTIEAMRRGAYDFITKPFDIDDLAEKVRKAL 132 Query: 122 AHTHSIDA-ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ + + + MVG S AMQ + I VA ++ TVLI G+SGTGKELV+R Sbjct: 133 DYSKTTEVLPIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSR 192 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +S R++ P V +NCAA+ E LLESELFG+EKGAFTGAD+R+ G+F A+ GT+ LD Sbjct: 193 AIHYNSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLD 252 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+SPM+Q ++LR +QE ++R+G + I VDVR++AAT++DL + V +G FR+DLY+ Sbjct: 253 EIGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYF 312 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV I++P LR+R+EDIPLLA HF++++A K V G TP+ M L+ YD+PGN+RE Sbjct: 313 RLNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAALMAYDYPGNVRE 372 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 LEN + RAV L +G+ ++ LP + L +++ L+E E+ A+ G + Sbjct: 373 LENIIARAVALCSGKVLTLDVLPPQVVEPKPALRPLKEV--LLEAERRAFRQAVAVAGLD 430 Query: 421 KTEAARQLGITRKTLLAKLS 440 A L + +L Sbjct: 431 PQAVADLLQVDLDYAKKRLK 450 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 619 bits (1597), Expect = e-176, Method: Composition-based stats. Identities = 194/453 (42%), Positives = 278/453 (61%), Gaps = 17/453 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV-FDLVLCDVRM 59 M+ I + DD+ ++ LL G V SG+ L ++++ DL+L DV+M Sbjct: 6 MSET--RIFICDDEEGILKYMKKLLESQGLVVETFTSGKMLLARLQQGPNADLLLQDVKM 63 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 +MDG+ L+E+K L P +PV+IMTA+ +++ AVEA+K GA DY+ KP + + LE Sbjct: 64 PDMDGLQILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFPKEKILGVLEN 123 Query: 120 ALAHTHSIDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGT 173 L + E + +V S + + VA SEA +LI G+SGT Sbjct: 124 VLE-RELLRKENQQLKEELGKVTLTDAIVFASDRFREVYELTLEVAASEANILILGESGT 182 Query: 174 GKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD 233 GKEL+A AIH S R + ++++NCAAL+++LLES+LFGH +GAFTGA ++G EAD Sbjct: 183 GKELIAGAIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFTGATTNQKGLLEEAD 242 Query: 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR 293 GTLF+DEIGD+S M+Q +LLR IQE + VG+ + VD+R +AAT+++L EV GR Sbjct: 243 SGTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAATNKNLEKEVAEGR 302 Query: 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 FR+DLYYRLNV++I +P LR+R+EDI LA HFL+++ +R K V FT +A+DL++ Y Sbjct: 303 FREDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVDRFTREALDLMLGYS 362 Query: 354 WPGNIRELENAVERAVVLLTGEYISERELPL-------AIASTPIPLGQSQDIQPLVEVE 406 WPGNIRELEN VERAV+L ++ LP+ A+ P S + L VE Sbjct: 363 WPGNIRELENVVERAVILARSGVVTTDHLPMWKKNVASTAATGPASALSSHQLVSLENVE 422 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 +E I L +TG +K+ A LGI+RKTL K+ Sbjct: 423 REHIRQTLARTGFHKSRTAEILGISRKTLDRKI 455 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 618 bits (1596), Expect = e-176, Method: Composition-based stats. Identities = 190/445 (42%), Positives = 277/445 (62%), Gaps = 10/445 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L+VDD+ C +L A L+ G+ A S +A E + + FD+V+ D+ M M G+ Sbjct: 4 RVLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFELLGVEDFDVVVTDMTMRGMSGLD 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 + I P +PV+++TA+ S++TA A++ GA D++ KP + D L+ T+E+AL H Sbjct: 64 LCERIVQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRHRAL 123 Query: 127 IDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + A ++ SP M+ + + +A S+ ++LI G+SGTGKELVARA Sbjct: 124 REEVRRLRRAVADARGYEQILSGSPVMRSVFDLLDRIADSDTSILITGESGTGKELVARA 183 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S RSE V +NCAA+ ++LLESELFGH +GAFT A R G F A GGTLFLDE Sbjct: 184 VHQRSRRSEGAFVAVNCAAVPDALLESELFGHARGAFTDAKGARSGLFARAHGGTLFLDE 243 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ +Q +LLRA+QER V+ VG+++ + VDVRLIAAT+RDL + RFR+DLYYR Sbjct: 244 IGELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDLETAIEERRFREDLYYR 303 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 +NVV +++P LR R D+ LLA HFL+ FA + ++G + A + L+ Y WPGN+REL Sbjct: 304 INVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARPIQGLSAPAAEKLMAYAWPGNVREL 363 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTP-----IPLGQSQDIQPLVEVEKEVILAALEK 416 +N +ERAV L ++I+ +LP I + + ++ P+ EVE+ IL LE Sbjct: 364 QNCIERAVALARYDHITVDDLPEKIRTYRRSHVLVSSDDPTELVPMEEVERRYILRVLEV 423 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 GGNK++AA+ LG R TL KL R Sbjct: 424 VGGNKSQAAQILGFDRATLYRKLER 448 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 618 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 190/446 (42%), Positives = 268/446 (60%), Gaps = 9/446 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 ILV+DD+ L LL G++V A+ G + + LV DV+MA +DG Sbjct: 2 TRRILVIDDEPGIRQALGQLLEYEGFDVRTASGGAEGITLYDSFRPQLVFLDVKMAGLDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + LK ++ +P V++++ +++++TAVEA + GA D L KPLD D + L A + Sbjct: 62 LEVLKRLRQADPNATVVMISGHATIQTAVEATQLGAYDILEKPLDTDRVLVLLRNAFTNR 121 Query: 125 HSIDAETPAVT--ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + S++ +VG+S ++ LL I V + A VLI G++GTGKELVARAI Sbjct: 122 QLTEENDRLRETIESRYEIVGRSFGIRSLLERIERVTGTPARVLITGENGTGKELVARAI 181 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R+ KP + +NCAA+ L+ESELFGH KG+FTGA R G+F +A GGTLFLDEI Sbjct: 182 HRGSQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIADRAGKFEQAHGGTLFLDEI 241 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+S Q ++LR +Q+ V R+G ++ + VDVR++AAT++DL E+ AGRFR+DLYYRL Sbjct: 242 GDMSQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAAGRFREDLYYRL 301 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NVV I VP+LR+RREDIPLL HFLQ+FAER+ + + +A+ L DWPGN+REL Sbjct: 302 NVVPITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEALQRLSELDWPGNVRELR 361 Query: 363 NAVERAVVLLTGEYISERE---LPLAIASTPIPLGQSQDIQPLVEV----EKEVILAALE 415 N +ER V+L + IS + L + P +G D E E+ +LA L Sbjct: 362 NTMERLVILASAASISVADIDRLAGRRTAEPSGIGSLLDCNTFEEFKQAAERAFLLAKLR 421 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 N +E AR L + R L K+ R Sbjct: 422 AFDWNVSETARALDMPRSNLYKKIER 447 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 618 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 209/497 (42%), Positives = 285/497 (57%), Gaps = 57/497 (11%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILVVDD+ + L L GY V +A +GR ALE V + DLV+ D+RM Sbjct: 2 MGAMGRKILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMP 61 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGIA L++I+A+ P +PV+I+T Y++VETAVEA+K GA+DY++KP + ++ T++K Sbjct: 62 EMDGIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKV 121 Query: 121 LAHTHSIDAETPAVT----------ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGD 170 + A PA ++G+ LL VA S+ATVL+ G+ Sbjct: 122 MRQQPRPAAVAPAAETGSPPPGRTDEGSRTVIGRDRHFLRLLERARTVASSKATVLVLGE 181 Query: 171 SGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV 230 SGTGKE+ AR IH S R P V LNCAAL E LLESELFGHEKGAFTGA ++G+F Sbjct: 182 SGTGKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFE 241 Query: 231 EADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVN 290 A GGTL LDEIG++ +Q +LLR +QE EV R+G + + VDV ++A T+RDLA V Sbjct: 242 LAHGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVK 301 Query: 291 AGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLI 350 G FRQDLYYRLNV+ I +PSLR+R +DI LLA F+++ + R K +K + A + Sbjct: 302 DGTFRQDLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKHSRRYNKPLKKLSAAARQRFL 361 Query: 351 HYDWPGNIRELENAVERAVVLLTGEYISEREL--------PLAIASTPIPLGQSQ----- 397 YDWPGN+RE+EN +ER V+L G+ + + P A A P P G + Sbjct: 362 DYDWPGNVREMENLLERGVLLSNGDELELWDFWDDELPPEPAASAELPEPSGPADAEPVD 421 Query: 398 ----------------------------------DIQPLVEVEKEVILAALEKTGGNKTE 423 + L EVE+++IL AL +T N+T Sbjct: 422 AAEPEASPPTVATEAVAAEASGSPDSAATLDSALAGRSLREVERQMILQALRQTDDNRTH 481 Query: 424 AARQLGITRKTLLAKLS 440 AA+ LGI+ +TL KL+ Sbjct: 482 AAKMLGISVRTLRNKLN 498 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 618 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 201/464 (43%), Positives = 295/464 (63%), Gaps = 28/464 (6%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +L++DD+ + L+ GY+V A++G +++++ +DLV+ D+RM DG Sbjct: 2 TRSVLIIDDEPLMRLSMLDALKAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMPGSDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + ++ K + V+++TA+ SV+TAV+A+K GA DY+ KP D L T+++A Sbjct: 62 LQVVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPMDELLMTVDRA-TKV 120 Query: 125 HSIDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 ++ E A+ GMVGK+ M+ +L ++ LVA ++ATVLI G+SGTGKE++ Sbjct: 121 QALRQENTALRQELEGKFNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGKEVI 180 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 A AIH +S R + L+ ++CAAL E+LLE+ELFGHE+GAFTGA K+R GRF A GTLF Sbjct: 181 ANAIHRNSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALKQRLGRFELAHKGTLF 240 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG+I+PM+QV+LLR +QE+ +RVG + I DVRL+ AT ++L EV AGRFR+DL Sbjct: 241 LDEIGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFREDL 300 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRLNVV + +P LR+R+EDI +LA H LQR R ++ +KGF+ A D+L+HY +PGN+ Sbjct: 301 FYRLNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSVAARDVLLHYSFPGNV 360 Query: 359 RELENAVERAVVLL-TGEYISERELP----LAIASTPIPLG------------QSQDIQP 401 RELENA+ERAV L G+ I +L P+ G ++ Sbjct: 361 RELENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVTNARQTGT 420 Query: 402 LVEV----EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L EV E+E ILA LE+ G ++T A++ LG++RK L K R Sbjct: 421 LAEVRERCEREYILAVLEREGWSRTAASKSLGLSRKALWEKCKR 464 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 617 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 185/456 (40%), Positives = 276/456 (60%), Gaps = 21/456 (4%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +LV+DD+ + ++ +L + V +G ALE+++++ FDLV+ D++M + G+ Sbjct: 6 KLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISGME 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK IK + P +PV+ +T YSSV++AVE +K GA+DY+ KP + + +T+ AL Sbjct: 66 VLKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALEQRVV 125 Query: 127 IDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + + + G VGKS M + I VAP+++TVLI G+SGTGKELVARA Sbjct: 126 DLGDLYLLKELRDGEGFDRFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGKELVARA 185 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R + P V ++C +L E+LLESELFGH KG+FTGA + G F A+GGTLFLDE Sbjct: 186 IHKHSQRRDHPFVAVDCTSLVENLLESELFGHVKGSFTGAMHTKTGLFKVAEGGTLFLDE 245 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 + ++S Q +LLR +QEREV +G Q +++RL+AAT+R L V G FR+DL++R Sbjct: 246 VSNLSLTTQAKLLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFREDLFFR 305 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LN++ +++P LR+R DIPLL GH ++ AE K +KG T AM +L Y +PGN+REL Sbjct: 306 LNIIPMDLPPLRERTGDIPLLVGHTVRTVAEEVGKDIKGVTAGAMQVLQSYSFPGNVREL 365 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI----------------QPLVEV 405 EN +ERAVVL I+ +L L A++P L + Q + ++ Sbjct: 366 ENIIERAVVLAEDSLITPDDLELNHAASPTVLLDYTAVPLSVEELKETKRHLREQAVEDI 425 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EK ++ AL++ GN T AA + G+ R A + + Sbjct: 426 EKAFVVNALQRNRGNITRAAEETGMLRPNFQAMMKK 461 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 617 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 191/449 (42%), Positives = 265/449 (59%), Gaps = 16/449 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL+ DDD + A L GY V A G+ AL+++ +V+ D+ M + Sbjct: 1 METPKILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKIELHEVQMVITDIMMPRV 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 +G+ +K++K++ P I + +A+++ E LK GA YL KP + + L+ +++ L Sbjct: 61 NGLEFIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLE 120 Query: 123 HTHSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 H + A ++G+S M L I VA S++TVLI G+SGTGKEL Sbjct: 121 HQALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH S RS+K V LNCAA+ + LLESELFGH KG+FTGA R GRF AD GTL Sbjct: 181 VARAIHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGD+ +QV+LLR +Q RE++ VGS + VDVR+IAAT+++L V + FR+D Sbjct: 241 FLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRL+V+ I +P LR+R D+PLL FL++F ++ V+GF Q M++L +YDWPGN Sbjct: 301 LYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPL-----------VEVE 406 +RELEN VER V++ T IS +LP + L E E Sbjct: 361 VRELENLVERLVIIKTTGVISIHDLPEKYRGGRTTTVLHGEPMTLPDDGFCLNSAVEEFE 420 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTL 435 +IL ALEK+GGNK EAA L + R TL Sbjct: 421 NRLILQALEKSGGNKKEAAELLNLKRTTL 449 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 617 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 190/460 (41%), Positives = 283/460 (61%), Gaps = 20/460 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M +ILVVDD++S +L +L GY VA A G QAL + E FDLVLCDVR+ Sbjct: 1 MAGAKANILVVDDELSMRELLDVMLSREGYKVACAEDGTQALSMLGEMKFDLVLCDVRLG 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +M GI LK K N V++++AY++ E AV A+ GA D++ KPLD L+ T+ ++ Sbjct: 61 DMSGIDVLKAAKKANHDTVVIMISAYATTEVAVAAMNEGAYDFVPKPLDSAELKQTIIRS 120 Query: 121 LAHTHSIDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 L+ +++ E A+ S +VG P M+H+ + + VA + +LI G+SGTG Sbjct: 121 LSL-RTVEQERQALDNSLEDHLYFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTG 179 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KEL+ARAIH S R+ P V +NC + E+L+ESELFGH KG+FTGA ++G F A Sbjct: 180 KELIARAIHEQSDRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHK 239 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GT+FLDEIG++S +QV+LLR +Q+ ++VG + ISVD R+++AT+++L+ EV G F Sbjct: 240 GTIFLDEIGELSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNF 299 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DL+YRLNV+ + VP LR+R+ DI +LA F+++F++ K V + A+D+L Y + Sbjct: 300 REDLFYRLNVIELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIKLSSYALDMLEKYSF 359 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIAST---PIPLGQSQDIQP---------- 401 PGN+RELEN +ER+V L T I L LA+ G+ D++ Sbjct: 360 PGNVRELENLIERSVALSTTNIILPESLSLAVHKRRWIEGVPGRRFDLEEVTKGVALDEI 419 Query: 402 LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L ++E+ + ALE +GGNK AA LGI+ ++ +L + Sbjct: 420 LADIERAYLKKALESSGGNKNRAAELLGISFRSFRYRLDK 459 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 202/445 (45%), Positives = 294/445 (66%), Gaps = 7/445 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 +LVV+DD + L +LR GY +SG AL Q+ + FD+V+ D+++ M Sbjct: 1 MTKPKLLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATL----- 117 G++ L+EIK N +I ++++TAYSS+++AV A+K GA +YL KP+D + L+ L Sbjct: 61 GGLSLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEELELVLEKLRE 120 Query: 118 EKALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 ++ L + + E + +VG SP M + I VAPS A+VLI G++GTGKEL Sbjct: 121 KQQLVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VA AIH S R+ KP V L+CAAL+E +LESELFGHEKGAFTGA + R+GRF ADGGTL Sbjct: 181 VAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDE+ ++S +QV+LLR +++ E +RVG + I VDVR IAAT+R+L EV+ GRFR+D Sbjct: 241 FLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRLNV+ I++P LR+R++DIP+L+ +F ++A++ +K +KGF P+A+ L+ + W GN Sbjct: 301 LFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTP--IPLGQSQDIQPLVEVEKEVILAALE 415 IREL+N +ERA+VL + IS LP +I IP+ + L E EKE+I L+ Sbjct: 361 IRELQNTIERAIVLCKSDTISVDHLPESIMPDNEYIPVIKIPIGTTLKEAEKEIIQRTLQ 420 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 T G+K AA+ LGI+ + + K Sbjct: 421 ITNGSKQSAAKILGISTRKIEYKTK 445 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 616 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 180/457 (39%), Positives = 279/457 (61%), Gaps = 17/457 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ D I+++DD+ ++ GY +ALE++ DL++ D++M Sbjct: 1 MSEDR-HIVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEIYRLQPDLIITDIKMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + DG L++ K P V+++T Y+SV++AV+A+K GA DYL KP + LQ T+ KA Sbjct: 60 QCDGFEVLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTINKA 119 Query: 121 LAHTHSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L H + Q G ++G +Q + I ++ S+A++LI G+SGTGK Sbjct: 120 LQHIALTEENQLLRAQLQEGLNTDNIIGARGGLQDVFETIGKISNSDASILILGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E++ARAIH +S RS P + ++CA+L E+LLESELFG+E+GAFTGA+ ++G A GG Sbjct: 180 EVIARAIHKNSRRSTGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLLEMAHGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDE+G+++P MQ +LLR ++ER ++RVG N++I++D+R++AAT+RDL + A FR Sbjct: 240 TLFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAIRAKEFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYR+NV+ +++P L +R++DIPLL HF ++F++ K V GFTP+AM + Y WP Sbjct: 300 EDLYYRINVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAMKSYAWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP-----------LVE 404 GNIREL N VERA+ L E + +LP + + Q+ L Sbjct: 360 GNIRELRNVVERAISLSGSEMVEISDLPEKVIGGQKKILPEQENLGAFSFHEAKDICLKR 419 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E E + L+K GN T+AA+ G+ RKT+ +++ Sbjct: 420 FEMEYLKELLDKHHGNITQAAKSAGMDRKTIHRLINK 456 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 175/444 (39%), Positives = 273/444 (61%), Gaps = 9/444 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L++DD+ IL +L GYNV A+S +A + + E + +++L D+++ +GI Sbjct: 3 TLLIIDDEPLQREILLTILSEEGYNVYTASSLEEASKIINEILPEIILTDLKLGNQNGIE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L + V+++TA+ ++ +AV A+K GA DYL KPLD + L T+ KA + Sbjct: 63 ILNSLPEEPFRPAVIVITAFGTISSAVNAIKQGAFDYLTKPLDKEVLLVTIRKAEERMNL 122 Query: 127 IDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 I G++GKS M +L + P+ ATVLI+G+SGTGKEL+ARA Sbjct: 123 IKENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIARA 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R +KP + +NCAA+ ++L+ESELFG+E GAFTGA+ R+ G AD GTLFLDE Sbjct: 183 IHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFLDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 I +I Q +LLR +Q++EV+++GS VDVR+IAAT+++L+ +V +FR+DLYYR Sbjct: 243 IAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L V+ +E+P LR+R+EDIP L F++++++ K V G +A++ L++Y WPGNIREL Sbjct: 303 LKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPGNIREL 362 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ----PLVEVEKEVILAALEKT 417 E+ +ERA+++ + I+ ++ + DI E+EKE+I AL K+ Sbjct: 363 ESVIERAIIICEKDKITFNDIQDELRVITPKNLFDIDIPDEGINYEELEKELIKKALIKS 422 Query: 418 GGNKTEAARQLGITRKTLLAKLSR 441 +AAR LG++ T +L + Sbjct: 423 NFVIAKAARLLGMSYDTFWYRLKK 446 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 200/469 (42%), Positives = 283/469 (60%), Gaps = 29/469 (6%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M IL+VDDD + LL GY V A+SG + VRE V DLV+ DVRM Sbjct: 1 MDSRTAQILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAVREAVPDLVVMDVRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ ++ P +PV+IMTA+ + + A+EA K GA DY++KP D + +EKA Sbjct: 61 GISGLEAYAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEKA 120 Query: 121 LAHTHSIDAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 +A S+ + + ++G+S AMQ L I AP++ATVLI G+SGTGK Sbjct: 121 VAAGRSMRSRVAVGEEGEAAVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARA++ S R++KP + +NC A+ E+LLESELFG+EKGAFTGA R+ G+ +A+ G Sbjct: 181 ELVARAVYQHSLRADKPFLVINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQANRG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDEIGD+ +Q ++LR +QE+ V+R+G Q+I VDVR+IAAT+RDL A V AG+FR Sbjct: 241 TVFLDEIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYRL VV + +P LR+R DIPLL +FL R++ + G + +AM LL WP Sbjct: 301 EDLYYRLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQPDPGVSDEAMALLTTQPWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP---LVEVEKE---- 408 GN+REL N V++A++ G + E+ + P+ G + P L + Sbjct: 361 GNVRELGNTVKKALIFNLGAPLGPDEV-QKASGEPLRGGGPAEADPGDSLARYVRRELAS 419 Query: 409 ----------------VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 VI ALE TGGN+++AAR LG++R TLLAK+ + Sbjct: 420 GRESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIEK 468 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 188/447 (42%), Positives = 269/447 (60%), Gaps = 14/447 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 D+ IL+ DDD + A L GY V A+ G+ ALE++ +V+ D+ M + Sbjct: 1 MDSARILIADDDKKTRDFVAAFLSYKGYQVFQASDGQDALEKIELNDVHMVITDIMMPRV 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 +G+ +K++KA+ P I + +A+++ E LK GA YL KP + + L+ +++ L Sbjct: 61 NGLEFIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLE 120 Query: 123 HTHSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 H + + ++G+S M L I VA S++TVLI G+SGTGKEL Sbjct: 121 HQALQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH S R+ K V +NCAA+ + LLESELFGH KG+FTGA R GRF AD GTL Sbjct: 181 VARAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGD+ P +QV+LLR +Q +E++ VG+ + VDVR+IAAT+++L V + FR+D Sbjct: 241 FLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRL+V+ I +P LR+R+ DIPLL +FL++F ++ V+ F MD+L ++DWPGN Sbjct: 301 LYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP---------LVEVEKE 408 +RELEN VER V+L I+ ++LP + P + + E + Sbjct: 361 VRELENLVERLVILKGSGTITFQDLPEKYRGIKSAPKSERLTLPDTGFCLNSAVEDFENQ 420 Query: 409 VILAALEKTGGNKTEAARQLGITRKTL 435 +IL ALEKTGGNK EAA L + R TL Sbjct: 421 LILQALEKTGGNKKEAATLLNLKRTTL 447 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 197/448 (43%), Positives = 275/448 (61%), Gaps = 13/448 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ + +LR G+ V +A++G L + + FDL+ CD+ + +DG+ Sbjct: 15 RILVVDDERGIRALCSDVLRRAGHEVEVADTGTAGLAAAKAKRFDLIFCDINLPGVDGLT 74 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L + V+++TA+ SVETAV +K GA DYL KP D L+ +AL+ Sbjct: 75 MLPSLLEREDPPTVILITAFPSVETAVRGMKLGARDYLTKPFTPDELRMVCRRALSEDAM 134 Query: 127 IDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 A +G +VG+SPAM L +A VA ++ VL+ G+SGTGKELVARA+H Sbjct: 135 RRENAELRHALAYGNLVGQSPAMLQLKKTVAKVAGADINVLVMGESGTGKELVARALHYQ 194 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 AR+ + V +NC AL +SLLESELFGH +GAFTGA++ + G F+ ADGGTLFLDEIG++ Sbjct: 195 GARAGRAFVPVNCGALVDSLLESELFGHVRGAFTGAEQAKRGLFLAADGGTLFLDEIGEL 254 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 +Q +LLRA+Q+ E++ VG + VDVR++AAT+RDL V G FR+DL+YRLNV+ Sbjct: 255 PLALQPKLLRALQDGEIKPVGGLEPQRVDVRVVAATNRDLQEAVAQGSFREDLFYRLNVI 314 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 IEVP+LR+RRED+P+LA HF A R R+A +P A++ L WPGN+R+LENA+ Sbjct: 315 TIEVPALRERREDVPVLAQHFAASAARRARRACPDISPAALEWLAAQPWPGNVRQLENAI 374 Query: 366 ERAVVLLTGEYISERELPLA-----IASTPIP-------LGQSQDIQPLVEVEKEVILAA 413 ERAVVL G + + +A+ P + D+ L E+E+ IL Sbjct: 375 ERAVVLAAGNTLGIEDFQPRAGVAGLAAESAPGRRTGGRGDSADDLLSLDELERLHILRV 434 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 LE GG KT+A+ LGI R TL KL + Sbjct: 435 LEACGGQKTKASAVLGINRTTLWKKLRQ 462 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 615 bits (1588), Expect = e-175, Method: Composition-based stats. Identities = 187/457 (40%), Positives = 272/457 (59%), Gaps = 19/457 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + +L+V+D+ T L L+ W Y A G +ALE+VR +V+ D++M Sbjct: 22 MSQE--KVLIVEDEPHALTGLAELVSAWDYRTETARDGIEALEKVRGWQPAIVVTDLKMP 79 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQAT---L 117 MDG+ L+ + ++ + V+++TA S+E+AVEA+K GA DYL KP+D L+ + Sbjct: 80 RMDGMQLLERLNQMDGSRAVIVLTAQGSIESAVEAMKIGAFDYLQKPVDSVRLRTILSNV 139 Query: 118 EKALAHTHSIDA-ETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + L + A T + S G MVG S M+ + S I VAP+ +VLI G+SGTGK Sbjct: 140 SRQLEMQREMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGK 199 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVA+ +H S R KP V +NCAA+ E+L+ESE+FGHEKGAFTGA +RR G F A+ G Sbjct: 200 ELVAKTLHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIERRAGCFELAEEG 259 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TL LDEIG++ Q +LLR +++R +R+GS +DVR++AAT+++ V G R Sbjct: 260 TLLLDEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGELR 319 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 DLYYRLNV I +P LR+ +EDIP +A + ++ +A++G + L+ YDWP Sbjct: 320 GDLYYRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDEMQARLLSYDWP 379 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIAS---------TPIPLGQSQDIQ---PLV 403 GN+REL N +ERAV+L TG+ + + LP + T P + ++ + Sbjct: 380 GNVRELRNTMERAVILCTGDRLQAQHLPPGFGTARPLKTAAVTAEPPANAVQVEVGTTVD 439 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 E E+ +IL LE T NKT AA LGI+ KTL KL Sbjct: 440 EAERLLILKTLESTHNNKTRAAEILGISLKTLHNKLK 476 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 615 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 206/457 (45%), Positives = 284/457 (62%), Gaps = 17/457 (3%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRM 59 + +LVVDD+ +L GY V +A R A+E +R+ Q F LVL D+ M Sbjct: 9 PQNATRVLVVDDEPGLRQVLHIAFHRQGYEVVVAPGARAAIEAIRQNPQPFPLVLTDLVM 68 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 + GI L KA + A V++MTA+S+VE+A++A++ GA D++ KP L A K Sbjct: 69 PDGSGIEVLTAAKARSNATEVIVMTAHSTVESALDAMRHGAYDFVTKPFSPAELTALAAK 128 Query: 120 ALAHT------HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGT 173 AL + + A+ + +G S AMQ + IA +AP+ TVL+ G+SGT Sbjct: 129 ALEKSSIVAENQRLRAQLERLDLPSREPLGTSAAMQRIAELIAKIAPTRTTVLLTGESGT 188 Query: 174 GKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD 233 GKE VARAIH S R+ +P + +NC AL E+L+ESELFGHEKG+FTGA R G F EAD Sbjct: 189 GKERVARAIHDQSDRAARPFLVVNCGALPEALMESELFGHEKGSFTGAGARSMGLFREAD 248 Query: 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR 293 GGTL LDEIG++ +QV+LLR +QER+V+ VG+ I+VDVR++AAT+RD+ AEV GR Sbjct: 249 GGTLLLDEIGELPAALQVKLLRVLQERKVRPVGAAAEIAVDVRVLAATNRDVEAEVRQGR 308 Query: 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 FRQDLYYRLNV+ IE+P LR+R DI LA FL+RFA K V+G T A+ L Y Sbjct: 309 FRQDLYYRLNVIRIELPPLRERPGDISRLAERFLRRFAAELGKDVRGLTTDAVRALDAYS 368 Query: 354 WPGNIRELENAVERAVVLLTGEYISERELPLAIAS---------TPIPLGQSQDIQPLVE 404 +PGN+RELEN +ERAV L G I +LP A+A +P + + E Sbjct: 369 FPGNVRELENMMERAVALAGGPTIGLGDLPSAVAGLSASPAPLLAQLPPEGCALDEVIGE 428 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 VE+ +IL ALE+TGG + AA+ LG++ ++L +L++ Sbjct: 429 VERRLILQALERTGGVRKAAAKLLGVSFRSLRYRLAK 465 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 615 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 207/475 (43%), Positives = 295/475 (62%), Gaps = 39/475 (8%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL+VDD++ Q LL G G++V A++G Q ++ VRE++ +LV+ DVRM MDG+ Sbjct: 2 AKILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDGL 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L+ I+ ++ +PV+IMTAYS+ ETA+EA K GA DY++KP + ++ A +E+A+ Sbjct: 62 TALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAGR 121 Query: 126 SIDAETPAVTASQFG---------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + A V G +VG S AM + I AP++A VL+ G+SGTGKE Sbjct: 122 RMRARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKE 181 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARA++ S R EKP + +NC A+ ++LLESELFG+EKGAFTGA RR G+ +A+GGT Sbjct: 182 LVARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGGT 241 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIGD+ +Q +LLR +QE++++R+G Q I VDVR+IAAT+ DL A V GRFR+ Sbjct: 242 VFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFRE 301 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRL VV + +P LR+R EDIP LA +FL RF+ G TP+A+ L WPG Sbjct: 302 DLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAYLEAQPWPG 361 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIAST----PIPLGQSQDI-----QPLVEVEK 407 N+REL N+V +A+V G + E +L A+ ++ P G + D+ Q + E+ + Sbjct: 362 NVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELIR 421 Query: 408 E---------------------VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 V+ AL TGGN+T AAR LG++R TLLAK+ + Sbjct: 422 RTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIEK 476 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 190/483 (39%), Positives = 270/483 (55%), Gaps = 48/483 (9%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 + IL++DD+ L+ +L G+ V A SG L + + DLV D+ M MDG Sbjct: 2 HARILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 +A L ++ A P +PV++++ + ++ETAV A++ GA D++ KPL + + ++AL + Sbjct: 62 LAVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEYG 121 Query: 125 HSIDAETPAVT-----ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + E A+ A M G+SP M+ L +IA VAP++A VLI G++GTGKEL A Sbjct: 122 -DLRRENEALRDSLPTAHADEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIHA S R+++PLV +NCAA+ E L+ESELFGHEKGAFTGAD + G+F A GTLFL Sbjct: 181 RAIHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+S Q ++LR +QE++ +RVG ++ + VDVR+IAAT+++L E+ AG FR+DLY Sbjct: 241 DEIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLY 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL V + +P LR+R D+PLL F QR A F P A + L Y WPGN+R Sbjct: 301 YRLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNVR 360 Query: 360 ELENAVERAVVLLTGEYISERELPLAI--------------------------------A 387 EL N VER ++L G ++ LP Sbjct: 361 ELRNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAATAAGGRAASGTGGATGQG 420 Query: 388 STPIP---------LGQSQDIQPL-VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLA 437 P+P L D++ E + + A L + GGN T A +GI R L Sbjct: 421 GDPLPDHLPDMAALLAPGMDLKAARAAFEAQYLAARLAECGGNVTRLAEAVGIERSHLYR 480 Query: 438 KLS 440 KL Sbjct: 481 KLK 483 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 614 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 188/459 (40%), Positives = 283/459 (61%), Gaps = 19/459 (4%) Query: 1 MTHDNIDILVVDDDISHCT----ILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCD 56 MT + + L+VDD+ IL++ + + + A +G++AL++V++Q +DLVL D Sbjct: 1 MT-NKLHTLIVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEALDKVKQQQWDLVLMD 59 Query: 57 VRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQAT 116 V+M EM+G+ L IK +P V++MTA+S++ AV A+K GA DY+ KP+ L Sbjct: 60 VKMPEMNGLEALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEI 119 Query: 117 LEKALAHT---HSIDAETPAVTAS-QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 + K+L S+ P + +VG S M+ + + I + + TVL+ G++G Sbjct: 120 VRKSLEARDLISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENG 179 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKELVARAIH +S R V +NC A+ E+L+ESELFGHEKGAFTGA +R+ G+F A Sbjct: 180 TGKELVARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLA 239 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 + GTLFLDEIG++ P MQV+LLR +QER+ VGSN+ + R+IAAT+R+L + G Sbjct: 240 NNGTLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEG 299 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR+DL+YRLNV+ I +P LR+R +DI LAG+F+++F++++ + + TP+A+D+L Y Sbjct: 300 EFREDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSY 359 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD----IQPL------ 402 WPGNIRELEN +ER+ ++ I+ LP +I TP PL Sbjct: 360 RWPGNIRELENIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVGYSGPLDFDAFK 419 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E+EKE I++AL+ G + Q I + TLL K+ + Sbjct: 420 EEMEKEFIVSALKANNGRINQTVAQANIPKNTLLRKIRK 458 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 614 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 200/457 (43%), Positives = 288/457 (63%), Gaps = 16/457 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILVVDD+ + L+ GY V A SG QALE V D++L DVR+ Sbjct: 1 MNSTPARILVVDDEKLIRWSVAERLQRGGYEVLSAESGEQALEMVAATPPDVMLLDVRLP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +DG+ TL+ +L+P + VL+M+A+S+V+ AVEA+K GA+D+L+KP F L +E+A Sbjct: 61 GIDGVQTLQRALSLHPEVAVLMMSAHSTVDIAVEAMKHGAIDFLVKPFPFQQLDEAVERA 120 Query: 121 LAHTHSIDAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEAT-VLIHGDSGTG 174 LA+ + + + +VG S AM+ + S I+ +A S+ T VLI G+SG+G Sbjct: 121 LANVRTRRQIATLTSDKRGASAVEAVVGSSAAMEQVRSMISRLAGSDTTTVLIEGESGSG 180 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KE+VARAIH SAR++KP++ +NCAAL E LLESELFGHE+GAFT A ++ G F A+G Sbjct: 181 KEVVARAIHFRSARADKPILQVNCAALPEHLLESELFGHERGAFTDAHAQKRGLFETAEG 240 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 G++ LDEIGD+ P Q +LLR ++ + +RVG Q + DVR+IAAT+ +L V GRF Sbjct: 241 GSVMLDEIGDLPPGGQAKLLRLLENKTFRRVGGVQELRADVRVIAATNVNLEERVAEGRF 300 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R DL++RLNVV I VP LR+ +D+P+L HF+ RF + ++ VKG P AM+LL Y W Sbjct: 301 RADLFFRLNVVRIVVPPLREHLDDVPILTAHFVARFDQEMKRQVKGVAPAAMELLRAYHW 360 Query: 355 PGNIRELENAVERAVVLLTG-EYISERELPLAIASTPIPLGQSQDI---------QPLVE 404 PGN+REL N +ERA +L G + I LP + P G+ + L + Sbjct: 361 PGNVRELRNVIERAFILHAGADEIRPEHLPPELRKAAAPGGKRPEKLVPQVTGEGLVLDD 420 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 VE+++I A+E+ GN+++AAR LG++R TL +L + Sbjct: 421 VERKLIAEAMERASGNQSKAARLLGVSRDTLRYRLKK 457 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 197/460 (42%), Positives = 291/460 (63%), Gaps = 22/460 (4%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL+VDD+I C L L+ + A++G++A++ + D++L DV+M M Sbjct: 1 MNKKKILIVDDEIHTCQGLARALKYE-WETFTASNGKEAIKIFEDNPVDIILTDVKMPGM 59 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 +GI L+++K + P P ++M+AY+ ET V+A+K GA D++ KP D+L L+ A+ Sbjct: 60 NGIELLRQLKNIRPETPAIVMSAYNETETVVDAVKAGAYDFITKPFRLDDLDGVLKTAVQ 119 Query: 123 HTHSID---------------AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLI 167 + S A+T + + ++ +S AM+++L + +AP+ ++VLI Sbjct: 120 ASPSFQLPSTKKATSAQLPAIAQTAKGSKNSPQIIYQSVAMENVLRTVQQIAPARSSVLI 179 Query: 168 HGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREG 227 G++GTGKE++A+AIHA+S RS+K + ++CAALN +L ESELFGHEKG+FTGA+++R G Sbjct: 180 TGETGTGKEVIAKAIHAASTRSKKAFIAVHCAALNANLFESELFGHEKGSFTGANEKRIG 239 Query: 228 RFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAA 287 RF ADGGTLFLDEIG+I QV+LLR ++ R +RVG N+ + D RLIAAT+RDL Sbjct: 240 RFEAADGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNETLYSDARLIAATNRDLRK 299 Query: 288 EVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMD 347 V AG FR+DLYYRL+V+ +E+P LR RREDIP L H+L N+ VKGFT AM Sbjct: 300 MVQAGEFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISSVTENQLNVKGFTADAMA 359 Query: 348 LLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ------P 401 L YDWPGN+REL N VER VL EY+ LP + L ++ I+ Sbjct: 360 RLCTYDWPGNVRELRNVVERMAVLSQQEYLDLPNLPDHVLLGEQQLSETAKIEDKDKALD 419 Query: 402 LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + E EK +IL AL+++ N+T AA +LG++R+TL +L + Sbjct: 420 VAENEKVLILKALKESNNNRTLAAERLGMSRRTLHRRLKQ 459 >UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein n=2 Tax=Aquificaceae RepID=A8UUR2_9AQUI Length = 441 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 177/440 (40%), Positives = 268/440 (60%), Gaps = 9/440 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + +LVV+D+ +L LRG GY A +A E + E+ F +VL D+ + + +G+ Sbjct: 1 MRVLVVEDEKDFRELLTEHLRGLGYQTEGACDLEEAYEVLEERDFSVVLLDLFLPDGNGM 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT- 124 LK I+ + V+++T + +++TAVEA+K GA D+L KP ++ T++KA+ Sbjct: 61 ELLKWIRENSALTEVVVITGHGTIKTAVEAIKLGAYDFLTKPCSLKEVEITIKKAVESRG 120 Query: 125 ----HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + + + ++ G V +S AM+ ++ ++ +A S+ VLI G+SG GKE++A Sbjct: 121 IKRENLLYKKEKRLSLDYGGFVFESRAMKEVIEKVDRIACSDCPVLITGESGVGKEVIAS 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH +S R++KP+V LN A++ + L+E+ELFG+EKGAFTGAD +EG F ADG TLFLD Sbjct: 181 IIHRNSDRADKPMVALNIASIPKELIEAELFGYEKGAFTGADSGKEGFFELADGSTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++ +Q +LLRAI+ + R+G + I +VR+I AT+R L V G FR+DLYY Sbjct: 241 EIGEMDMSLQAKLLRAIETSKFYRIGGRREIESNVRIITATNRHLGELVRRGEFREDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV I +P LR+RREDI LA HFL F + K +KGFT +A + L Y W GN+RE Sbjct: 301 RLNVVEINIPPLRERREDILPLAYHFLDLFNRKYSKNIKGFTARAENSLTSYPWYGNVRE 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 L+N VERAV+ G+ I + I+ + + + +VE+E I L++ N Sbjct: 361 LKNIVERAVLFSDGDRIDSED----ISCLFTHQESKKSFKTIKDVEREYITEILKQVNFN 416 Query: 421 KTEAARQLGITRKTLLAKLS 440 K +A+ LGI +TL KL Sbjct: 417 KRKASEILGIPLRTLYRKLE 436 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 613 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 200/450 (44%), Positives = 279/450 (62%), Gaps = 17/450 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD+ L + + G V A+ G + LE +R+ ++L D+ M G+ Sbjct: 18 VLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHTTGMDL 77 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK K + P V++MTAY +VETAV+A+K GA D++ KPL ++ ++ AL + Sbjct: 78 LKAAKTVAPETEVVLMTAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRIVKNALEKQSLV 137 Query: 128 DAET----PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 ++G S A + + + APS+ATVL+ G+SGTGKEL+AR++H Sbjct: 138 VENRVLRAQLAEQRSRAVIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARSLH 197 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 SAR++KP + +NCAA+ ES+LE ELFG+EKGAFTGA REGRF A GGTLFLDE+G Sbjct: 198 EGSARADKPFIAINCAAIPESILEGELFGYEKGAFTGATSSREGRFEAASGGTLFLDEVG 257 Query: 244 DISPMMQVRLLRAIQEREVQRVGSN-QIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 ++ +QV+LLR +QE E++R+G + + +D+RLIAAT+ +LA V GRFR+DLYYRL Sbjct: 258 EMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYRL 317 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV++I VP LR+RR+DIPLL HFLQ +A++N K + G T A+D L Y WPGN+RELE Sbjct: 318 NVISIAVPPLRERRDDIPLLVQHFLQVYADKNGKFMAGCTQDALDRLCRYAWPGNVRELE 377 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ------------PLVEVEKEVI 410 NAVERAVVL GE + E LP + S L ++ PL E+E VI Sbjct: 378 NAVERAVVLSRGEVLDEAALPFEVRSGEGALAEAAGAGDPGGALRFAVGTPLAEIEMAVI 437 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L T G+K AA+ LGI +T+ +L Sbjct: 438 HETLRHTKGDKRLAAKLLGIATRTIYRRLE 467 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 613 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 200/444 (45%), Positives = 273/444 (61%), Gaps = 9/444 (2%) Query: 7 DILVVDDDISHCTILQALL-RGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL VDD+ ++C I + + V A SG +ALE+++ D+V+ D+ M MDGI Sbjct: 6 RILFVDDEPAYCRIFSKRIGADPRFRVETAGSGAEALERLQHSPADIVITDLSMPLMDGI 65 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L EIK+L P I +LI+T+ S V+A+K GA DYL+KP DF+ ++ ++ L+H Sbjct: 66 ELLSEIKSLYPQIFILILTSDDSTSQVVKAMKAGAYDYLLKPFDFEMVERSIATILSHKA 125 Query: 126 SIDAET--PAVTASQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ A ++ Q+ ++G+ M + I+ VA + ATVLI G+SGTGKEL+A Sbjct: 126 AVQAGLCPECLSGEQYCFENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTGKELIAS 185 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIHA S R +KP + +NCAAL E L+ SELFGHEKGAFTGA R++G F +A GGTLFLD Sbjct: 186 AIHAKSTRKDKPFIQINCAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTLFLD 245 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGDISP QV LLR ++ QRVG + I DVRLI AT+RDLAA +FR+DLYY Sbjct: 246 EIGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFREDLYY 305 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV+++ P LR RR DIPLL +FL+R+ N K + G T AM LL +YDWPGN RE Sbjct: 306 RLNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQIDGVTRDAMTLLCNYDWPGNCRE 365 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQ---SQDIQPLVEVEKEVILAALEKT 417 L N +E AV+ G + + LP I ++ + L + E +I LE++ Sbjct: 366 LANIIEHAVIFSRGRTLDKDSLPSQIRTSDRHSSGLTLNLATATLADAESALIKKVLEES 425 Query: 418 GGNKTEAARQLGITRKTLLAKLSR 441 N +AA L I R TL K+ + Sbjct: 426 NWNLKKAAELLDIARGTLYGKMEK 449 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 613 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 187/452 (41%), Positives = 274/452 (60%), Gaps = 18/452 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL++DD+ C +Q +L G G+ V A SG++A + V + DL L D+ + DGI Sbjct: 3 KILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLGSEDGIE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK +K +P + V+I+T Y SVE+AVE+L+ GA Y+ KP D L+ ++ AL T + Sbjct: 63 VLKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFKADALRLIVKLAL-KTQT 121 Query: 127 IDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E + + + ++GKS A Q + +++ +A +TVLI G+SGTGKE+VAR Sbjct: 122 LKREVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVAR 181 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH S R E+ + +NCA++ LLESELFGHEKGAFTGA R++G F EA GT+FLD Sbjct: 182 AIHDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFLD 241 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++ MQV+LLR +QER ++RVG+ + I +D R+IAAT+R+LA + FR+DL+Y Sbjct: 242 EIGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLFY 301 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV I +P LR+R DI LA +FL F+ + + +P+A L+ Y WPGN+RE Sbjct: 302 RLNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVRE 361 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI-----------QPLVEVEKEV 409 L N +ER ++ +G + LP I ST P ++ + + +EK + Sbjct: 362 LRNVIERICIMRSGPTLLPEHLPQEIRSTVAPPPLPAELPISIAADLGLEEAVSAIEKSL 421 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I AL+KTG N + A L I R TL K+ + Sbjct: 422 IQQALQKTGWNVLQTAANLKIPRGTLRYKMEK 453 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 613 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 195/441 (44%), Positives = 268/441 (60%), Gaps = 18/441 (4%) Query: 19 TILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNPAI 78 + +L+ G+ V + + L ++ D+V+ D++M + G+ L+ IKA P + Sbjct: 20 KAVTQILQREGHPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDV 79 Query: 79 PVLIMTAYSSVETAVEALKTGALDYLIKPL-DFDNLQATL-----EKALAHTHSIDAETP 132 V++MTA+++VETAVEA+K GA DYL KP + D + T+ KAL E Sbjct: 80 EVIMMTAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEAL 139 Query: 133 AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKP 192 V + ++G+S M+ + + V+ S ATVLI G+SGTGKELVARAIH SAR +KP Sbjct: 140 TVRSQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKP 199 Query: 193 LVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVR 252 V +NC+AL E+LLESELFGH KG+FTGA ++G F ADGGT+FLDEIGD+ P QVR Sbjct: 200 FVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVR 259 Query: 253 LLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSL 312 LLR +QE EV+RVG+N+ + VDVR+IAATH DL+ G+FR+DL+YRLNV+ I++P L Sbjct: 260 LLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPL 319 Query: 313 RQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372 R R ED+PLLA HFL+ +A + K V G +P+AM+ L W GN+RELEN +ERAVVL Sbjct: 320 RDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLT 379 Query: 373 TGEYISERELPLAIASTPIPLGQSQDIQ------------PLVEVEKEVILAALEKTGGN 420 E I +LP S P P + + E+ + A LEK N Sbjct: 380 GNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEKNNQN 439 Query: 421 KTEAARQLGITRKTLLAKLSR 441 + AAR G+ R L + Sbjct: 440 VSSAARAAGVDRSNFRRLLKQ 460 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 177/450 (39%), Positives = 277/450 (61%), Gaps = 16/450 (3%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +++L+VDD+ + + + G++ A + QA + + D++L D+R+ + G+ Sbjct: 13 LNLLIVDDERVVREGCRDVAQTLGFSTFTAENAEQAYKILDSTSVDVILLDLRLPGIGGL 72 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA----- 120 L++IK P V+++T Y++V++AV+A+K GA DY+ KP + D L+ L++ Sbjct: 73 EALRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYVTKPFNMDELRILLDRVTGHLK 132 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 L + + E GMVG++P M+ L I A S VLI G+SGTGKE+VAR Sbjct: 133 LTTENRMLREQVKARHGFGGMVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVVAR 192 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H + +KP + ++C +L +L+ESELFG+ KGAFTGA ++G ADGGT+FLD Sbjct: 193 AVHYTGCYKDKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQHSKQGLLAMADGGTVFLD 252 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++ +Q +LLRA+QE+E++ VG + + ++VR++AAT+RDL V G FR+DLY+ Sbjct: 253 EIGELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLYF 312 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ + +P LR R++DIPLL GHFL+R + + +A+ L++ YDWPGN+RE Sbjct: 313 RLNVLTLRIPPLRDRKQDIPLLVGHFLERTERATGFQ-RNISDEALKLMLTYDWPGNVRE 371 Query: 361 LENAVERAVVLLTGEYISERELPLAIA----------STPIPLGQSQDIQPLVEVEKEVI 410 LE+ ++RA L +G I+ +LP I + P + I P+ E+EK+ I Sbjct: 372 LEHCLDRACALTSGPTINTLDLPTTIQNWHVQTQTVLAPQAPAAPTNGIVPIAEMEKQAI 431 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L A+E+ G+K EAAR LGI + TL KL Sbjct: 432 LEAIERLHGDKLEAARLLGIGKTTLYRKLK 461 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 613 bits (1582), Expect = e-174, Method: Composition-based stats. Identities = 183/455 (40%), Positives = 274/455 (60%), Gaps = 14/455 (3%) Query: 1 MTH--DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQV-REQVFDLVLCDV 57 MT + IL+ DDD +L + GY A G + L ++ ++ +DL++ DV Sbjct: 1 MTKATEQRHILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDV 60 Query: 58 RMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATL 117 RM DG+ L++++ PV++MTA+ + TA+ A++ GA DY+IKP D + + + Sbjct: 61 RMPGQDGLTILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVV 120 Query: 118 EKALAHTHS---IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 ++ H + + M+G SPAMQ + +I VA ++ATVLI G++GTG Sbjct: 121 KRLFDHQQLASKVRELEAKSFDPRDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTG 180 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KE++A IH +SAR P+V +NCAAL ESLLESELFGHEKGAFTGA +R+GRF A Sbjct: 181 KEVLANLIHVNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHK 240 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 G++FLDEIG+++ Q +LLR +QERE +RVG + VDVR+IAAT+RDL A+V AG F Sbjct: 241 GSIFLDEIGEMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTF 300 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DLYYRLNV+ + +P+LRQR DIPLLA FL ++ + +AM+ L +YDW Sbjct: 301 REDLYYRLNVITLHLPALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMERLNNYDW 360 Query: 355 PGNIRELENAVERAVVLLTGEYISERE---LPLAIASTPIPLGQSQDIQP-----LVEVE 406 PGN+R+LE+ +ERAV+L G I+ +P + ++ + + + L +VE Sbjct: 361 PGNVRQLEHEIERAVILSRGNVITSEHMSLVPSSRSALQVDIAARLREKSTLEELLADVE 420 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + + AL + + AAR LG++ + + Sbjct: 421 RLALQEALVQHDDDLKVAARSLGLSEAEFQKRQKK 455 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 199/452 (44%), Positives = 284/452 (62%), Gaps = 12/452 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 ++ D +L+VDD+ S L+ LL+ G+ A+ GRQ +EQ++E D+VL DVRM Sbjct: 5 LSDDAPRVLIVDDETSILDSLRILLKTEGFVPFTAHGGRQGVEQLQELRPDIVLTDVRMP 64 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++ G+ L + ++P +PV++MTA +++++AV+A+ GA Y+ KP D L A L +A Sbjct: 65 DVSGVQVLSAARQVDPDVPVILMTAQATLQSAVQAVNEGAFYYIQKPFRNDELVAILRRA 124 Query: 121 LAHTHSIDAETPAVTAS--------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 H + AE + +G+S + +L VAP+++TVLI G+SG Sbjct: 125 AEH-RKLRAENQVLKQEIRRRERNASQRPIGRSKSWLEVLRLAETVAPTDSTVLITGESG 183 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKE+VAR IH SAR++ +++NC AL ESLLESELFGH KG+FTGA K + G F A Sbjct: 184 TGKEVVARYIHDLSARTDNGFMSINCGALPESLLESELFGHVKGSFTGAVKDKTGLFAAA 243 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 + GT FLDEIG+ +P QV+LLRA+Q+REV VG+ + +SVD R++AAT+RDL E+ G Sbjct: 244 NHGTFFLDEIGETTPSTQVKLLRALQQREVIPVGATESVSVDTRVLAATNRDLEEEIKRG 303 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR DL+YRLNV+A+ +P LRQR +DIP+LA FL R A + K A+D L+ Y Sbjct: 304 GFRADLFYRLNVIAVHLPPLRQRADDIPVLAESFLARSATLRHEEQKVLNEGALDALMAY 363 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAI---ASTPIPLGQSQDIQPLVEVEKEV 409 WPGN+RELENA+ERAV+L +G IS LP + + P+ ++ L +E+ Sbjct: 364 GWPGNVRELENALERAVILCSGNTISADALPERVTARRAEPLVSERAPVSPTLEAIERAY 423 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I L+ GGNK+ AA LGI TL KL+R Sbjct: 424 IQWVLQNEGGNKSRAADMLGIDPSTLYRKLAR 455 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 180/450 (40%), Positives = 277/450 (61%), Gaps = 11/450 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL+V+DD S ++ L GY + A++ +A + + LV+ D+ + M Sbjct: 1 MSSGRILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAFAILDKASQSLVMTDLHLPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ LK+++ P V++MTA+ +++TAVEA+K GA D+L KP+ L+ + + L Sbjct: 61 SGLELLKKVRLDYPETAVIVMTAFGTIQTAVEAMKAGAYDFLTKPIHPYELKMLVRRCLE 120 Query: 123 HTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 H I+ TA +VG S + L A VA ++AT+LI+G++GTGKEL Sbjct: 121 HHRLIEEVQVLRTALDEKYGFEAIVGSSSQLMRALDVAARVASTDATILIYGETGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VA+AIH S+R ++P +T+NC A+ + LLESELFGH KG+FTGA ++G+ ADGGT+ Sbjct: 181 VAKAIHLRSSRRDRPFITINCGAIPKELLESELFGHVKGSFTGALTHKKGKVEMADGGTV 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 LDEIG++ +QVR+LR IQERE+++VG+ VDVR++AATHR+LA V AG FR+D Sbjct: 241 LLDEIGEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAGMVKAGTFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRL VV I +P LR+R DI +L HFL++ ++ + + + +Y WPGN Sbjct: 301 LYYRLLVVPINLPPLRERTGDILILVQHFLEKCRMKHSRPNLMMSTDLLPYFTNYSWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ------PLVEVEKEVIL 411 +R+LENAVER V+L I+ +LP +++ P P + + L ++EK++IL Sbjct: 361 VRQLENAVERLVLLARDSTINASDLPDFLSAAPAPPPEPVPVALPEGGINLEDLEKDLIL 420 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL+K GN+T AA+ L ++R+ +L + Sbjct: 421 QALKKYAGNQTRAAQYLNMSRRAFAYRLEK 450 >UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G7F8_GEOUR Length = 457 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 183/449 (40%), Positives = 268/449 (59%), Gaps = 9/449 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 +T ILV++DD +L L GY V A+ G + L++ R++VF++VL D+RM Sbjct: 5 VTRKEAKILVIEDDKPLRELLHMELTRSGYKVESASDGEEGLDKYRQEVFNVVLLDMRMP 64 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG+ L++++ + V++ T + ++ETAVE +K GA DYL KP+ D L+ ++KA Sbjct: 65 GMDGVEVLRQMRTESTIPEVIVFTGHGTIETAVECIKYGAYDYLTKPVKLDELEMVIDKA 124 Query: 121 LAHTH----SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 +I+ + Q +VGKS +Q +L + ++ VLI G+SG GKE Sbjct: 125 NEKNRLRLENINLKLEISKLDQHRIVGKSQVIQKVLETVRRWGATDEHVLICGESGAGKE 184 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L ARA+H +S R+ KP VT+NC L+ + ESELFGH +GAFTGA+K R G F AD GT Sbjct: 185 LFARAVHDASRRANKPFVTVNCGRLSANTAESELFGHVQGAFTGANKGRAGLFELADTGT 244 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LF+DEI ++ +QV+LLR ++ +R+G N ISVDVR + A+++ L VN G FR+ Sbjct: 245 LFMDEISEMPLDVQVKLLRILETGTFRRMGGNHDISVDVRFVFASNKKLEDCVNRGEFRE 304 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL++R+N++ I +P LR+R EDI L+ +FL + A + A + +AM L Y WPG Sbjct: 305 DLFHRINLLPINIPPLRERPEDIIPLSYYFL-KSANESGSANWEISEEAMAALCAYSWPG 363 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ----PLVEVEKEVILA 412 N+REL N + RA +L T + IS LP + T + PL VE++ I Sbjct: 364 NVRELRNTIRRASILATDQIISSDLLPFSPPKTAPSFAVTGLPDVLPLPLWVVERDYIQK 423 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 LEK GNK++AA+ L I RKTL KL R Sbjct: 424 VLEKLEGNKSKAAKVLEIDRKTLYTKLER 452 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 191/455 (41%), Positives = 267/455 (58%), Gaps = 32/455 (7%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDD+ Q L + A SG +AL+ ++ Q D+++ D+RM + G+ Sbjct: 22 SILIVDDEEDVFYSFQRFLEEFPVRTFSAKSGEEALKLLKTQAVDVIIMDIRMGKKSGLE 81 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 TLKEI+ L P V+IMTAY + +TA+EA+K GA DY++KP + L++ + KAL + Sbjct: 82 TLKEIRKLFPQQVVVIMTAYGTCQTAIEAMKMGAYDYILKPFNMIELKSVITKALEASKL 141 Query: 127 IDAET------PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + A + ++GKS MQ + I VAP+ ATVLI G+SG+GKELVAR Sbjct: 142 TKEVSSQAFPANAFDSRSLHIIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGKELVAR 201 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AI+ S R+ KP + +NCAA+ E+LLESELFGHE+G+FTGA +R G+F + DGGT+FLD Sbjct: 202 AIYQYSLRANKPFIAINCAAIPENLLESELFGHERGSFTGAMAQRIGKFEQGDGGTVFLD 261 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++ Q ++LR +QE E R+GSN+ I DVR+IAAT++DLAA V FR DL+Y Sbjct: 262 EIGEMPISTQAKILRVLQEGEFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADLFY 321 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV I +P LR+R EDIP L HFL + A + QAM L+ Y WPGNIRE Sbjct: 322 RLNVVKISLPPLRERVEDIPDLIDHFLAKHRRYLPNAPTCISSQAMRSLLAYHWPGNIRE 381 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPI------------PLG-------------- 394 LEN ++RA+VL T I LP I + P G Sbjct: 382 LENVIQRAMVLATSATIQNCHLPEEIQAAEKKKYFKEKSGKGGPAGGLDFLVQEIVGSDL 441 Query: 395 QSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLG 429 + ++ L + + LE+ G++++A R LG Sbjct: 442 RDHRLETLKSLLHRIYTQVLEECEGDESKAKRILG 476 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 188/466 (40%), Positives = 264/466 (56%), Gaps = 28/466 (6%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ++ VVDDD S +L+ + G L+ + + D++L D+RM +M Sbjct: 1 MQKGNVWVVDDDSSIRWVLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG++ LK IK P +PV+IMTA+S ++ AV A + GA DYL KP D D A +E+A+ Sbjct: 61 DGLSLLKIIKEQYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAIT 120 Query: 123 HTHSIDAETPAVT--ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 H A S M+G++PAMQ + I ++ S +VLI+G+SGTGKELVA Sbjct: 121 HYREQKQPNNAENILQSVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELVAH 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H S R+ P + LN AA+ + L+ESELFGHEKGAFTGA + R+GRF +A+GG+LFLD Sbjct: 181 ALHRHSPRALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQANGGSLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ +Q RLLR + E + RVG + VDVR+IAATH+DL VN G FR+DLY+ Sbjct: 241 EIGDMPLDIQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVNEGDFREDLYH 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ I++P LR R EDIP LA +FLQ+ A+ K Q++ ++ Y W GN+R+ Sbjct: 301 RLNVIRIQLPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLKTMMEYVWSGNVRQ 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI--------------------- 399 LEN V+ + I ++LP I + Sbjct: 361 LENVCRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSLWADEALGEGK 420 Query: 400 -----QPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L + E+ ++L+AL T G+K +AAR LG R TL KL Sbjct: 421 ENILNDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLK 466 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 207/461 (44%), Positives = 283/461 (61%), Gaps = 25/461 (5%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + +LVVDD+ + L+ALL GY+V +S A +++ + FD+ L D++M ++ G+ Sbjct: 10 VRVLVVDDEPTLLRALEALLGQKGYSVVGLDSPIVATQRLAHEDFDVALLDIKMPQLSGL 69 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQA-TLEKALAHT 124 L +K P + V++MT +++VETA+ A+++GA DYL KP + L A + KA Sbjct: 70 ELLSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPFEDVELVARAVAKAAERK 129 Query: 125 HSIDAETPAVT-------ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 D T + G+VG S ++ ++ I VA S TVL+ G+SGTGKEL Sbjct: 130 MLFDRNRRLETQLREKEGGAPEGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGTGKEL 189 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARA+HA S R +P V LNC AL E+LLESELFGH KGAFTGA + ++G F ADGGT+ Sbjct: 190 VARALHARSPRRAQPFVALNCGALTETLLESELFGHVKGAFTGAQRDQKGLFDAADGGTI 249 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGDI P QVRLLR +QE E++RVGS + + VDVR+IAATHRDL V AG+FR+D Sbjct: 250 FLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGKFRED 309 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRLNV+ I +PSLR R +D+PLLA HFL+R+AER K V+ P A++LL Y WPGN Sbjct: 310 LFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALAPDAIELLCGYRWPGN 369 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI-----------------Q 400 +RELENA+ERAVVL GE ++ +LP A+ PL + Q Sbjct: 370 VRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLVREAPAGGDEAVWLTMSYATAKEQ 429 Query: 401 PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L EK + + N + AAR+ G+ R L + Sbjct: 430 SLRRFEKGYVETLMRHCDNNISAAARKAGMDRSNFKRVLRK 470 >UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN3_9GAMM Length = 464 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 189/462 (40%), Positives = 270/462 (58%), Gaps = 24/462 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + ++DDD S +L GY V + + + +V D ++ D+RM Sbjct: 1 MSQAQ-HLWILDDDPSIRWVLHKAFERSGYQVQVFERADELTRALDSKVPDTIISDIRMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 DG+A LK+IK +P +P++IMTA+S ++TAV A K GA +YL KP D + + + KA Sbjct: 60 GTDGLALLKQIKQRDPDLPIVIMTAHSDLDTAVSAFKGGAFEYLAKPFDIEEARNVVAKA 119 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 +AH + A A+ ++G+S MQ + I ++ S +VLI G++GTGKE VAR Sbjct: 120 MAHRSKPEVRVSAQQANN-DIIGESAPMQDVFRAIGRLSASSVSVLITGETGTGKERVAR 178 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H S RS+KP + LN AA+ L+ESELFGHE+GAFTGADK+R+GRF++ADGGTLFLD Sbjct: 179 ALHKHSPRSDKPFIALNMAAIPADLVESELFGHERGAFTGADKKRDGRFLQADGGTLFLD 238 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ +Q RLLR + E + VG++Q + V+VR+IAATHRDL V FR+DLY+ Sbjct: 239 EIGDMPLSVQTRLLRVLAEGQFYPVGAHQPVQVNVRVIAATHRDLKEAVANNEFREDLYH 298 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ + +P+LR+R++DIPLLA +FL++ A + K + A+ L Y WPGN+R+ Sbjct: 299 RLNVIQLRLPALRERKQDIPLLARYFLKQSAIELEVSEKQLSDAALAQLEAYGWPGNVRQ 358 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE---------------- 404 LEN V+ + +S ELP + L Q E Sbjct: 359 LENVCRWLTVMAPAQQVSPDELPHELLEQSEQLENGQSTGNWRELLAHELRTQTHNYDNM 418 Query: 405 ------VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 VE+ + ALEK G+K +AA LG R TL KL Sbjct: 419 TPIIQDVERIALRIALEKCDGHKQKAAHWLGWGRNTLTRKLK 460 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 198/459 (43%), Positives = 286/459 (62%), Gaps = 25/459 (5%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +L+VDD+ LQ L Y+V+LA S +A + Q FD+++ D+RM G+ Sbjct: 3 PSVLIVDDEKHTREGLQQALVDS-YDVSLAASADEAFNLMDAQPFDVIVTDLRMPGKSGL 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 + + A VL+MTAY ++ETAVEA+K GA+D+L KP++ + L+ +++AL Sbjct: 62 KVIDKALAQPNRPAVLMMTAYGNIETAVEAMKRGAVDFLTKPVNIERLEVLIQRAL-KAK 120 Query: 126 SIDAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 +++ E + S G++G SP + ++ + LVAPS AT+LI G+SGTGKEL+A Sbjct: 121 TLEVEVKQLHERLDEKFSFEGIIGNSPKLHEVIDRVKLVAPSRATILIEGESGTGKELIA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 +AIH SS+RS P + ++CAAL+E+LLESELFGHE+G+FTGA +RR GRF ADGGTLFL Sbjct: 181 QAIHQSSSRSRGPFLAVHCAALSENLLESELFGHERGSFTGATERRIGRFESADGGTLFL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG+IS QV+LLR ++ + ++RVG ++ I +DVRL+AAT+R L V G+FR+DL+ Sbjct: 241 DEIGEISASTQVKLLRFLETKSIERVGGSKPIDLDVRLVAATNRTLEQLVRDGKFREDLF 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 +RLNVV I +P LR+R ED+PLL GH++ F+E N P A+ L Y WPGNIR Sbjct: 301 FRLNVVRITMPPLRERAEDVPLLLGHYITAFSEENGVPPLTIEPGALATLQAYPWPGNIR 360 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP-----------------L 402 EL N E AVVL G +SE +L + P + Sbjct: 361 ELRNFCENAVVLRRGRSLSEYDLEPRYRDATLAGATGPAPTPGAPGSTVLGGAVPTSFSV 420 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E EK ++ AL K+ GN+T+AA +GI+R+TL K+++ Sbjct: 421 EENEKRLLREALIKSRGNRTKAAELMGISRRTLHRKIAQ 459 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 197/456 (43%), Positives = 276/456 (60%), Gaps = 24/456 (5%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L+VDDD + +L ALL G A G++AL + + D+V+ DVRM MDG+ Sbjct: 8 TVLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVRMPGMDGLQ 67 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L E+ P +PV+++TA+ +V AVEA+K GA D+++KP D + + T+ KAL Sbjct: 68 VLAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDREEILFTVRKALLRAQG 127 Query: 127 IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 E G +G+S AM + + +A A ATVL+ G+SGTGKEL A+A+H +S Sbjct: 128 --EEARQQVRPTGGFIGRSRAMADVQAVLAKAAAGTATVLLRGESGTGKELAAKAVHDAS 185 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 R + P V L+CAAL ++LLESELFG+EKGAFTGA R+ GR A GGTLFLDE+GDIS Sbjct: 186 PRRDGPFVKLHCAALPDTLLESELFGYEKGAFTGAATRKPGRVELAHGGTLFLDEVGDIS 245 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 P +QV+LLR IQERE++R+G Q + VDVR +AATH+ L V GRFR+DL+YRLNVV Sbjct: 246 PAVQVKLLRVIQERELERLGGTQTVKVDVRFVAATHQPLEERVKEGRFREDLFYRLNVVP 305 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 + +P+LR+R +DI LA HFL+ A+ N + + L WPGN+R+L+N +E Sbjct: 306 VWIPALRERPDDIEPLALHFLEVHAKTNGRPPFTLMTDGLAALRAQPWPGNVRQLQNFLE 365 Query: 367 RAVVLLTGEYISERELPLAIAS----TPIPLGQSQDIQPLV------------------E 404 R VVL + I RE+ +A P P + + L E Sbjct: 366 RLVVLSDTQVIGGREVLQELARQPGLAPAPFAATPSVSALEAPTVPVTDSARTLESQRKE 425 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +E++ + AL++ G N+T AAR LGI+R+TL KL Sbjct: 426 MERQAMADALKRAGDNRTLAARLLGISRRTLYNKLE 461 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 610 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 193/448 (43%), Positives = 266/448 (59%), Gaps = 9/448 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 N IL+VDDD + LR V A S ++A+ ++R++ FD+VL D+R+ + Sbjct: 1 MKNSTILLVDDDRHLLESMALWLREQHVEVETAASCQEAIAKMRDRAFDIVLSDIRLDDG 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG L + P V+++T Y +V+TA+EAL+ GA D L KPL + L ++E+AL+ Sbjct: 61 DGFDVLAFSRKNRPEQSVILLTGYGTVDTAIEALRAGAFDLLTKPLIDEELLLSIERALS 120 Query: 123 HTHSIDAETPA-----VTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 ++ + +VG MQ + + +A + ATVLI G+SGTGK L Sbjct: 121 QRKVVEENVQLKAQLDLRFGLENIVGHEHRMQKVFDMVERIADTRATVLITGESGTGKSL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 +ARAIH +R ++ V + C A+ ESLLESELFGH G+FTGA + G+F +AD GT+ Sbjct: 181 LARAIHRRGSRRDQAFVEVACGAMPESLLESELFGHAAGSFTGATGDKIGKFTQADKGTI 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG S +QV+LLR +QE E + VGS + VD R+I AT+ L V AGRFRQD Sbjct: 241 FLDEIGTASASLQVKLLRVLQELEFEPVGSTKTQRVDTRVILATNEKLEQAVAAGRFRQD 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYR+NV+ IEVP LR+R DIPLLA HFLQR E + K +GF+ + + Y+WPGN Sbjct: 301 LYYRVNVINIEVPPLRERIADIPLLANHFLQRTCEESGKRSQGFSDDVITAMQRYNWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPI----PLGQSQDIQPLVEVEKEVILAA 413 +REL+N VERAV+L G + +L AIAS I P+G + L E+ +IL Sbjct: 361 VRELQNVVERAVLLGRGPKVQVEDLTPAIASGQIVSIDPVGNKALKEALESPERAIILDV 420 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 LE N+ A LGI R TL K+ R Sbjct: 421 LEMHQWNRNATADALGINRTTLYKKMKR 448 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 609 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 194/447 (43%), Positives = 275/447 (61%), Gaps = 8/447 (1%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + + +LV+DDD + + L G++ +A G+ + ++ ++ FD+VL D++MA+ Sbjct: 4 PAEPLQVLVIDDDKTLAETISESLDRRGHSCTVATGGKAGVAKLEQEAFDVVLTDLKMAD 63 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 + G+ ++ K L P V ++T ++ V+TAVEA+K GA YL KPLD L+A +E + Sbjct: 64 LHGLEVVERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAVIENSA 123 Query: 122 AHTHSIDAETPAVTASQ--FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 ++ + G+VG SP MQ +L + APS A+VLI G++GTGK+L A Sbjct: 124 KRVGTLRELRRQLDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTGKDLAA 183 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RA+H + R KP +NCA L ESLL+SE+FGHEKGAFTGAD++R GRF A GGTLFL Sbjct: 184 RALHTNGPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQRVGRFEHAHGGTLFL 243 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ +Q +LLRA++ EV RVG+N+ + VDVR+IAAT++DL EV AGRFRQDLY Sbjct: 244 DEIGDMPLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGRFRQDLY 303 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 +RL V +++P LR+ REDIP L HFL+ FA R+ K V P YDWPGN+R Sbjct: 304 FRLKVGTVKLPPLREHREDIPQLVSHFLKEFARRDNKPVPKVAPAVWKSFEGYDWPGNVR 363 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD------IQPLVEVEKEVILAA 413 EL N + +VL ++ + P P + +PL EVE+ I A Sbjct: 364 ELRNLLASMMVLDLDGELTPDDFPEDPGVKPAGTAERPHGPDQLVGRPLDEVERYYIEKA 423 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLS 440 L+ TGGN+ EAAR L I+ +TL K+ Sbjct: 424 LDLTGGNREEAARLLNISERTLYRKIQ 450 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 609 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 194/451 (43%), Positives = 287/451 (63%), Gaps = 18/451 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+D+ ILQ L G++V + +A E + FDL L DVR+ + +GI Sbjct: 7 ILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDVRLPDGNGIEL 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 ++E + +P + ++IMT Y+ V+TAV+A++ GA D+L KP D D + +++ L T I Sbjct: 67 MREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDE-LIKTRQI 125 Query: 128 DAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 A+ + G++G+ PA+Q L ++L+A S++TVLI G+SG GKE++A+A Sbjct: 126 KADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGKEVLAKA 185 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S +RS KPLV++NC A+ E LLESELFGH KGAFTGA + R GRF A+GGT+FLDE Sbjct: 186 LHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIFLDE 245 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+S +QV+LLR +QER + VGS Q I VDVR+IAATHRDL AE+ AGRFR+DLYYR Sbjct: 246 IGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDLYYR 305 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV+ + +P LR+R +DI LL HF+ RF ++ + + G + + ++++Y WPGN+REL Sbjct: 306 LNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWPGNVREL 365 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI-----------QPLVEVEKEVI 410 +N +ER L + +LP + S + QS + + E E +I Sbjct: 366 QNLIERVTTLKRHGIMELEDLPSRMISDKERVLQSFRMDVENAECIDLKSTVDEFESHLI 425 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L+AL++ NK +AA L + R TL+ K+ + Sbjct: 426 LSALQRFQWNKNQAANFLAMNRTTLVEKIKK 456 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 609 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 189/464 (40%), Positives = 278/464 (59%), Gaps = 29/464 (6%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDDD LL+ GY+V +A SG LE VR++ FDLV+ DV+M M G+ Sbjct: 3 SILIVDDDDQLRQSFAKLLKEEGYSVDMAPSGEAGLEAVRDKAFDLVVLDVQMPGMSGLE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH- 125 I+ ++ +PV++MTAY + ETA+EA K GA DY++KP D + + +AL H Sbjct: 63 AFARIREIDATLPVVVMTAYGTTETAIEATKLGAFDYILKPFDIAGVLDLITQALEAGHM 122 Query: 126 ---SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 ++ +A ++G SP MQ + I VA ++ATVLI G+SGTGKELVARAI Sbjct: 123 MRARVEMNVAPDSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGTGKELVARAI 182 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 + S R+ KP + +NC AL E+LLESELFG+EKGAFTGA RR G+ +A+GGT+FLDEI Sbjct: 183 YQHSKRAGKPFLVINCVALPETLLESELFGYEKGAFTGAASRRIGKIEQANGGTVFLDEI 242 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+ +Q ++LR +QER ++ +G N I VDVR++AAT+R+L + FR+DLYYRL Sbjct: 243 GDMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEVFREDLYYRL 302 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 VV + +P LR R D+ LLA +F+ F++ + G T +A ++ H+ WPGN+REL Sbjct: 303 KVVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRHHPWPGNVRELA 362 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEV--E--KEV--------- 409 NA++++++ G + ++ IA D + V E +E+ Sbjct: 363 NALKKSLIFSRGYPVRPEDISQVIAGPDQAGPSVTDGSDMDRVVGEWAREMLTAGGDTAR 422 Query: 410 ------------ILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I AL+ T GN+++AA+ LG+ R TLL+K+ + Sbjct: 423 FDYLTDRLTAIIIREALQMTRGNRSQAAKLLGLARPTLLSKIDK 466 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 608 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 192/459 (41%), Positives = 276/459 (60%), Gaps = 24/459 (5%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +L++DD+ L++ L VA A + +Q L V + D V+ DVR+ +M G+ Sbjct: 2 PKVLIIDDEPGILYSLKSALERGDTAVATAATAKQGLATVARERPDAVILDVRLPDMSGL 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT- 124 I+ +P +PV+++TA+ S ETA+EA K GA +YL+KP+D L L +A Sbjct: 62 DAFLLIRETDPRLPVIVITAHGSTETAIEATKRGAFEYLLKPIDLHQLDEVLGRAFEMRL 121 Query: 125 ------HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 S DA P +A +VG+ PAM + I +AP + VLI G+SGTGKELV Sbjct: 122 AQVAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKELV 181 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARA++ S RS+KP V +NCAA+ ++LLESELFGHEKGAFTGAD+RR G+F +A GGT+F Sbjct: 182 ARALYLHSPRSDKPFVAINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTVF 241 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIGD+ P Q ++LR +Q++ +RVG N+ + DVR+IAAT+RDL+A V +FR+DL Sbjct: 242 LDEIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFREDL 301 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YRLN + +P LR R DI L HF+ + +K V+G A+ +L + WPGN+ Sbjct: 302 LYRLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAALAVLESHRWPGNV 361 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV--------------- 403 REL+NA+ AVV GE I+ LP ++ P G + ++ L+ Sbjct: 362 RELQNAMRYAVVQAVGEVITPDCLPASLRGAAAPPGDALELTALITSLLRVGATDIYRQV 421 Query: 404 --EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 V++ ++ A LE GN+ +AA +LGI+R TL AKL Sbjct: 422 THTVDRALLTAVLEHVHGNQKQAADRLGISRTTLRAKLQ 460 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 608 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 185/447 (41%), Positives = 278/447 (62%), Gaps = 14/447 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL++DD+ S C+ LQ L Y + L + ++ D+VL D+++ ++DG+ Sbjct: 3 RILIIDDEPSICSSLQFALED-DYETEATTEVDKGLHIIEQEPIDVVLLDLKIGKVDGLE 61 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+EIK P V+++TAY ++ +V+A++ GA YL KP+ + L + LE+AL H Sbjct: 62 VLQEIKRKKPETIVIMITAYGTIANSVKAIRLGAYSYLTKPIHMEELFSVLEQAL-HYKK 120 Query: 127 IDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ + ++ GM+GKS AM + I V +++VLI G+SGTGKELVAR Sbjct: 121 LNEQVAYLSQELEKKYGYEGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGKELVAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH S R ++ +NCAA+ E LLESELFG+EKGAFTGA R+EG+F A+ GT+FLD Sbjct: 181 AIHFSGKRKQEHFEVVNCAAIPEHLLESELFGYEKGAFTGAATRKEGKFQLANRGTIFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ +Q +LLR +Q++EV ++GSN+ +DVR+IAAT++ L +V G FR+DLY+ Sbjct: 241 EIGDMPLALQAKLLRVLQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTFREDLYF 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL+V+ I +P LR+R+ED+P L HFL F + K++KGF A L+ Y +PGNIRE Sbjct: 301 RLHVIHIHLPPLRERQEDLPYLLQHFLHTFNQELGKSMKGFRSDAQRELLAYQYPGNIRE 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI------QPLVEVEKEVILAAL 414 L N VE ++V+ GEYI +LP+ I + + +PL E+EK+ ILA L Sbjct: 361 LSNIVESSMVIADGEYIELEDLPMFIREKGEGFAKQKGSLDDYIGRPLKELEKDFILATL 420 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 + ++ + A LGI+ + L KL + Sbjct: 421 KHNDNHRKKTAEMLGISERGLRDKLKQ 447 >UniRef50_C6BW44 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrionales RepID=C6BW44_DESAD Length = 444 Score = 608 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 195/442 (44%), Positives = 274/442 (61%), Gaps = 4/442 (0%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + I IL VDD S +L+ L GY+V +AL + E D+V+ D RM Sbjct: 1 MS-EKIRILAVDDSKSTLEVLKRNLESQGYDVLTCLRVDEALSLLEEHEIDIVITDFRMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ ++ ++ + + ++++T Y S+ AVEA+K GA +YL KP + LQ +++ Sbjct: 60 QATGLDLIRHVRENHRDVELMMITGYPSISGAVEAIKDGAGEYLPKPFTSEELQGAMDRI 119 Query: 121 LAHTHSIDA-ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + H A + V +G+VG SP MQ + I A + A VLI GDSGTGKELVA Sbjct: 120 VERVHRRRALKAVEVPDETYGIVGNSPGMQLVFRRIGKAAATNANVLISGDSGTGKELVA 179 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RA+H S R P V +NCAA+ +SL+ESELFGH KGAFTGA + R G F A+GGT+FL Sbjct: 180 RAVHYHSDRRAAPFVPVNCAAIPDSLVESELFGHVKGAFTGAKEARAGFFEIANGGTVFL 239 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD SP MQ +LLR +Q +E +VGS+ + +VD R++AATH+DL V G FR+DLY Sbjct: 240 DEIGDASPNMQAKLLRILQSKEYCKVGSSVVHTVDTRILAATHKDLKRLVEDGSFREDLY 299 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL+VV I VPSL +R +DI +L +FL +F++ + T +A+ L +Y WPGN+R Sbjct: 300 YRLHVVDIPVPSLAERGDDILILISNFLVKFSKTMQCPTPSITDEALTALRNYSWPGNVR 359 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGG 419 ELEN ++R VV++ + I +LP + + +P+ + D + L EVE+E I L T Sbjct: 360 ELENLIQRMVVIVDHDPIEVTDLPPNMRFS-LPMEERVD-RSLAEVEQEHIKNVLIMTDN 417 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 NKT AA LGI RKTL KL R Sbjct: 418 NKTRAAEILGINRKTLREKLKR 439 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 189/446 (42%), Positives = 277/446 (62%), Gaps = 9/446 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + +LVV+DD + +LQ L G+ V +A R +EQVR D+V+ D+RM ++ Sbjct: 16 REQFTVLVVEDDDAMRDVLQEELGDAGFRVQVAAGARAGIEQVRAGPVDMVITDLRMPDL 75 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG +++I A + P++++TA+ S++TA++A+K GA DY+ KP + D L ++KALA Sbjct: 76 DGFDLIRDINATDSPPPIIMVTAFGSIDTAIKAVKLGAHDYITKPFEIDELVLVIDKALA 135 Query: 123 HT---HSIDAETPAVTA--SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 +D V + ++ S M+ LLS ++ VA S A+VL+ G+SGTGKEL Sbjct: 136 ERALRRRVDRLQREVESRYGFDNIIAHSSEMRELLSLVSRVATSTASVLLTGESGTGKEL 195 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH +S R+E V +N AA+ E+L+ESELFGH KGAFT A + + G F EADGGT+ Sbjct: 196 VARAIHYNSPRAEGAFVAVNLAAVPEALVESELFGHTKGAFTDARQSKAGLFNEADGGTI 255 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEI +++ +Q +LLRA+QE+E++ VG+ + VDVR++AAT+RDL + G FR+D Sbjct: 256 FLDEIAEMAAPLQAKLLRALQEQEIRPVGATRPQRVDVRVVAATNRDLQERMAEGDFRED 315 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVK-GFTPQAMDLLIHYDWPG 356 LYYRLNV+ IE+P LR+R +DI LA HFL + R + +L Y WPG Sbjct: 316 LYYRLNVIQIELPPLRRRPDDILPLAEHFLALASARLTPPRSVRLAAETQRILHSYPWPG 375 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIA---STPIPLGQSQDIQPLVEVEKEVILAA 413 N+REL N +ER + L G+ I+ +LP + S L ++E+E I Sbjct: 376 NVRELANVIERGLTLCRGDLIAPEDLPNHVRERKSNDFLSAAVARRMNLAQLEREFIERI 435 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKL 439 L++ GGNKT A++LG+ RKTL KL Sbjct: 436 LKEEGGNKTRTAQRLGLDRKTLYRKL 461 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 191/501 (38%), Positives = 280/501 (55%), Gaps = 68/501 (13%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ-VFDLVLCDVRMAEMDGI 65 IL+VDDD L +L GY + A SG + +E+++ DL++CDVRM + GI Sbjct: 9 TILIVDDDEEIRYSLGRVLGSRGYQIETAASGEEGIEKIKGGLKPDLIMCDVRMGGISGI 68 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 TL+ +++ + ++ +++MTA+ + +TA+EA+K GA DY++KP D D + EKA++ + Sbjct: 69 ETLQHMRSASSSLQIVLMTAFGTAQTAIEAMKFGAYDYIMKPFDVDKVIEIAEKAISSSQ 128 Query: 126 SIDAETPAVTASQF-----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + + + G+VG SPAMQ + I VA S+ATVL+ G+SGTGKEL+A+ Sbjct: 129 DLKSANRYEKKVNYDDYKEGIVGNSPAMQEVFKVIGQVAASDATVLVTGESGTGKELIAK 188 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 I+ S RS P V +NCAA+ ++L+ESELFGHEKG+FTGA +R GRF + D GT+FLD Sbjct: 189 CIYQHSLRSGGPFVAVNCAAIPDNLIESELFGHEKGSFTGATTQRIGRFEQCDRGTIFLD 248 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD++ Q ++LR +QE E+QRVG + I VDVR+IAAT++DL V FR+DLYY Sbjct: 249 EIGDMALATQTKILRVLQEGEIQRVGGTETIKVDVRVIAATNKDLEKMVEDKEFREDLYY 308 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV I VPSL++R+ED+P + LQ + + V +P A++ L+ Y WPGN+RE Sbjct: 309 RLNVFRIRVPSLKERKEDVPDIVDFMLQNLVKEKKARVTRVSPDALNALVAYGWPGNVRE 368 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTP----------------------IPLGQSQD 398 L N V R+ V+ G+ I ++LP I P + + Sbjct: 369 LGNVVYRSAVVAQGDAILMKDLPDTIRGGRGEAPAAPVVSAASSQTSVAAPVEPQASAAE 428 Query: 399 IQPLVE-----------------------------VEKE------VILA-----ALEKTG 418 E E++ +I A+ +TG Sbjct: 429 TDSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIERAIGETG 488 Query: 419 GNKTEAARQLGITRKTLLAKL 439 GN+ AA LGITR TL +L Sbjct: 489 GNQARAAEILGITRNTLKKRL 509 >UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio RepID=B8KA97_VIBPA Length = 464 Score = 606 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 178/450 (39%), Positives = 263/450 (58%), Gaps = 11/450 (2%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + +L+V+D S + ++ L ++ + +GR A+E + + DL+L D+R+ + Sbjct: 7 NQNAKYLLMVEDTASVAALYRSYLTPLCIDINIVGTGRDAIESLNFRTPDLILLDLRLPD 66 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 M G+ L +K NP +PV+ MTA+ S++TAVEA++ GA D+LIKP + D L+ T+ AL Sbjct: 67 MTGMDVLYAVKKKNPDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAL 126 Query: 122 AHTHSIDAETPAVTASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E + G +G S MQ + I A S+A++ I G+SGTGKE+ A Sbjct: 127 RKASKLKNEADYPGNQGYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAE 186 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIHA+S R +KP + +NCAA+ + L+ESELFGH KGAFTGA R+G ADGGTLFLD Sbjct: 187 AIHATSKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLD 246 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ ++ +Q +LLR IQ Q+VGS+++ SVDVR + AT+RD EV GRFR+DLYY Sbjct: 247 ELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVEEGRFREDLYY 306 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL V+ + +P LR+R +DI +A L ++ K +PQ +D Y+WPGN+R+ Sbjct: 307 RLYVIPLHLPPLRERGDDIIEIAYSLLGFMSKEEGKDFVRLSPQVVDRFASYEWPGNVRQ 366 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTP-------IPLGQS---QDIQPLVEVEKEVI 410 L+N + VVL G+ I LP + +P+ QDI PL EK I Sbjct: 367 LQNVLRNVVVLNNGKEIDLSMLPPPLNKPTENQIRVDLPVSDEFSVQDIFPLWLTEKRAI 426 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 A++ GN +AA L ++ T+ KL Sbjct: 427 EQAIKACDGNIPKAAGYLDVSPSTIYRKLQ 456 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 606 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 201/468 (42%), Positives = 284/468 (60%), Gaps = 34/468 (7%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+V+D++ +LQ++ + V AN+ +A Q++ + FDL++ D+R+ + DG Sbjct: 5 KILIVEDELVVRNLLQSIFQRHKLPVTCANNLAEATAQLQREQFDLMMLDIRLPDGDGQK 64 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+++ A+ V+++T Y SVE+AV ++ GA DY++KP + L+KA + Sbjct: 65 FLEQVAAMPERPLVVMVTGYGSVESAVGCMRAGAFDYVLKPFSPSQIDVILKKAQTYRQL 124 Query: 127 IDAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + + +VG+SPAM L I VAP++ATVLI G+SGTGKE+VAR + Sbjct: 125 LRVNRLLSDDPEDEEGILVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVAREFY 184 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S R + + +NCAA++E+L+ESE FGHE+GAFTGA +RREGRF A GTL LDE+ Sbjct: 185 RRSPRRSQAFIKVNCAAISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLLDEVS 244 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 +I +Q +LLR +QERE +RVG ++ I V+VR+IA ++RDL V G FRQDLYYRLN Sbjct: 245 EIPANLQAKLLRVLQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLYYRLN 304 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 V + VP+LR+R EDI LLA HFL+RFA ++ V GF A LI Y WPGN+REL+N Sbjct: 305 VFPVHVPALRERPEDIALLADHFLRRFARKHGVKVTGFADSARAALIGYRWPGNVRELQN 364 Query: 364 AVERAVVLLT-GEYIS-----------ERELPLAIASTP------------IPLGQSQDI 399 VERAV+L G ++ ELPL A P P G S + Sbjct: 365 TVERAVILSETGRAVTAAALGLPGDFLPGELPLEPAPAPEVPALPVAAVAEEPAGASPTV 424 Query: 400 QP-------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L E+EK+ I AAL +TGGN+T+AA +LGI+ +TL KL Sbjct: 425 TDSHGQVLKLDELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQ 472 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 606 bits (1563), Expect = e-172, Method: Composition-based stats. Identities = 196/456 (42%), Positives = 283/456 (62%), Gaps = 18/456 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M++ IL+VDD+ L++ L+ GY+V+ ++ + + +R + FD+V+ D+R+ Sbjct: 1 MSN---KILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLP 57 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M+G+ LKEIK NP I V+IMTAY ++E+AV A K GA DY+ KP D L L++A Sbjct: 58 NMNGMELLKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRA 117 Query: 121 LAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L H ++ T +VG S AM+ L+ + ++ ++T+LI G+SGTGK Sbjct: 118 LQHKNTTAEVTRLRREIQSEFEFHNIVGSSHAMKKLIETVKEISDRDSTILIQGESGTGK 177 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E +A A+H S R P + ++CAALN +LESELFGHEKG+FTGA K R GRF A+GG Sbjct: 178 EKIAGAVHYHSGRKMGPFIRVSCAALNREILESELFGHEKGSFTGAIKTRRGRFELANGG 237 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 ++FLD++ DI MQV+LLR IQER +RVG + +S++VR+I AT +DL G FR Sbjct: 238 SIFLDDVDDIPLDMQVKLLRVIQERTFERVGGEKTLSINVRIICATKKDLLLLAKKGEFR 297 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNVV I +P LR+R++DIP L +FL++F R+ A+ G + + +++L+ Y+WP Sbjct: 298 EDLFYRLNVVPITIPPLRERKDDIPRLINYFLKKFVSRHEDALPGVSRETLNVLMEYNWP 357 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIP-------LGQSQDIQ---PLVEV 405 GN+RELEN +E AV I+ LP + I L +Q IQ L EV Sbjct: 358 GNVRELENVIEHAVAFSHSHGITIDTLPDYLKRVEIHKKLISMDLSNTQTIQLHDVLTEV 417 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EK +I A +KT GN+ + A LGI R TL KL R Sbjct: 418 EKRLIEWAHQKTNGNQVKMAEILGIPRTTLRNKLVR 453 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 186/455 (40%), Positives = 264/455 (58%), Gaps = 15/455 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILVVDD+ + L+ +L GY V A S Q LE ++ + DL + D+R+ Sbjct: 23 MDPTKASILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLP 82 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG+ L + L +PV++++ ++ V+A+K GA D+ KP+D D + ++ A Sbjct: 83 GMDGLTLLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNA 142 Query: 121 LAHT---HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 L+ + A + M+G+SPAM+ L +I VAP+ VL+ G+SGTGKEL Sbjct: 143 LSRRDLEGKVQALSARERRFSDDMLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKEL 202 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VA +H S R++ P V +NCAA+ L+ESELFGHEKG+F+GA RR G+F A GGTL Sbjct: 203 VAAEVHRQSRRADGPFVKVNCAAIPSELIESELFGHEKGSFSGAAARRRGQFEVAHGGTL 262 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGD+ Q ++LRA+Q EV RVGS + +VDVR+IAAT++DL EV G FR+D Sbjct: 263 FLDEIGDMGLSAQAKVLRALQTGEVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFRED 322 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L++RLNVV + VP LR R +D+P+LA F Q N K P D L + WPGN Sbjct: 323 LFFRLNVVPLTVPPLRDRLDDVPVLAERFFQLATRENGLRPKPVDPAVYDRLRQHRWPGN 382 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-------PLVE----VE 406 +REL N ER V++ GE I+ ++P + P PL E VE Sbjct: 383 VRELRNVCERMVIMS-GERITAADVPETVGPRAAPPPPPGSADLSRYGEVPLKELRDLVE 441 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++ IL+ LE+ N T+AA+ LG+ R L K+ + Sbjct: 442 RDYILSRLEEHDWNITQAAQALGVERTNLHKKIKQ 476 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 604 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 262/470 (55%), Gaps = 32/470 (6%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + +VDDD + +L+ L + L + + D+++ D+ M + Sbjct: 1 MQKGKVWIVDDDSAIRWVLERALNNAHMECTSFEDIQSVLIALEKTCPDVLISDIHMPDN 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ L +K +P +P++IMTA+S + TAV A + GA DYL KP D D +++AL Sbjct: 61 DGLTLLTRLKQSHPKLPIIIMTAHSDLNTAVNAYQQGAFDYLPKPFDIDETILLVKRALN 120 Query: 123 HTHSIDAETPAVT---ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + + T + + A+ ++G++PAMQ + I ++ S +VLI+G+SGTGKEL+A Sbjct: 121 YYRNQQPNTRSNSPPTAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELIA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 A+H S ++ P + LN AA+ + L+ESELFGHEKGAFTGA + R+GRF +A GG+LFL Sbjct: 181 DALHRHSPKATGPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQAHGGSLFL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ +Q RLLR + E + RVG I VDVR+IAATH+ L V G+FR+DL+ Sbjct: 241 DEIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQEGKFREDLF 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 +RLNV+ I +P LR+R EDIP LA +FL + A++ K PQ +L+ W GN+R Sbjct: 301 HRLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVESKILAPQTETILMSLPWSGNVR 360 Query: 360 ELENAVERAVVLLTGEYISERELPLAIAST---------PIPLGQSQDIQPLV------- 403 +LEN V+ + + I ++LP + + + + PL Sbjct: 361 QLENVCSWLTVMSSSQMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLDPLANWTKTAL 420 Query: 404 -------------EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 ++E+ ++ AL T G+K EAAR LG R TL KL Sbjct: 421 ENNKQNLLQQVLPQIERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLK 470 >UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Planctomycetaceae RepID=D2R3E8_9PLAN Length = 465 Score = 604 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 181/446 (40%), Positives = 260/446 (58%), Gaps = 8/446 (1%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 + + IL DD+ + ++ L G+ V + G A+ + +D ++ D+ M M+ Sbjct: 12 NRLKILFADDEAALQELMSLELPRMGHEVTVCPDGPTAVAALELNTYDCIIVDLDMPGMN 71 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 GI + + K L P +++T SS ++A+ AL+ GA DYL KP +L+A L + A Sbjct: 72 GIQVIGKCKELAPDTDAVVLTGKSSFDSAIAALRFGAFDYLTKPCKLVDLKALLHRVAAK 131 Query: 124 THSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 ++ + +VG S AM + I VAP+ +TVL+ G++GTGKELV Sbjct: 132 REWVNKCRALKHQLERLEGKTELVGSSRAMDQVRKLIQKVAPTGSTVLVLGETGTGKELV 191 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARA+H S R+EKP V +NC AL ESL+ESELFGH KG+FTGAD R G F A GGT+F Sbjct: 192 ARAVHQQSLRAEKPFVAVNCGALPESLIESELFGHRKGSFTGADDHRVGLFEVAHGGTIF 251 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG++ MQ +LLR ++ E++RVG N VDVR++ ATHR+L V AG FR+DL Sbjct: 252 LDEIGELPKSMQAKLLRVLESGEIRRVGDNNAFVVDVRVVCATHRNLPEMVEAGDFREDL 311 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YR+N + +P LR+R +DI LA H L+RF + FTP+A+ LL + WPGN+ Sbjct: 312 MYRINTFELHIPPLRERLDDIEDLASHLLRRFLPTLKAGDTCFTPEAVQLLEKHGWPGNV 371 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ---PLVEVEKEVILAALE 415 REL N +E A +L I+ LP ++ P I L ++E + I AL+ Sbjct: 372 RELANVIEHASILCDKAPITPENLPQRLSGRIKPQLTRARIAGPISLRDLEMQAIHEALD 431 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 + GNK EAA +LGI+ KTL KL++ Sbjct: 432 RHNGNKPEAAEELGISLKTLYNKLNQ 457 >UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pilR n=65 Tax=Proteobacteria RepID=PILR_PSEAE Length = 445 Score = 604 bits (1560), Expect = e-171, Method: Composition-based stats. Identities = 191/447 (42%), Positives = 279/447 (62%), Gaps = 12/447 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ L+VDD+ +L+ L + A + ++A E + + FDL L D+R+ Sbjct: 1 MSRQKA--LIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLP 58 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ ++ I+ +P PV ++TAY S++TA++ALK GA D+L KP+D L+ + A Sbjct: 59 DGSGLDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATA 118 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 L + E P ++G+SP M+ L ++I +A S+A V I G+SG+GKELVAR Sbjct: 119 LRLRNPEAEEAPV----DNRLLGESPPMRALRNQIGKLARSQAPVYISGESGSGKELVAR 174 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH R E+P V +NC A+ L+ESE FGH+KG+FTGA + ++G F A GGTLFLD Sbjct: 175 LIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLD 234 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ D+ MQV+LLRAIQE+ V+ VG Q ++VDVR++ ATH+DLAAEV AGRFRQDLYY Sbjct: 235 EVADLPMAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYY 294 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ + VP LR+RREDIPLLA L+R A T A + L +Y +PGN+RE Sbjct: 295 RLNVIELRVPPLRERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRE 354 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP------LVEVEKEVILAAL 414 LEN +ERA L + I +L LA A G + + L ++E+++I+ AL Sbjct: 355 LENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLEDYLEDIERKLIMQAL 414 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 E+T N+T AA++LG+T +++ +L + Sbjct: 415 EETRWNRTAAAQRLGLTFRSMRYRLKK 441 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 178/453 (39%), Positives = 272/453 (60%), Gaps = 19/453 (4%) Query: 7 DILVVDDDISHCTILQALLRGW-GYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL+VDD+ ++L +L + + + Q E +++ +DLV+ D+RM DG+ Sbjct: 4 KILMVDDEQDMLSLLSRILSDRTDHEITSVDDPLQVTELLKKNDYDLVITDLRMPGRDGL 63 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 ++ +K NP V+IMTAY ++E+A+EA + GA DY+ KP + + +++AL Sbjct: 64 GVMEAVKQKNPNTAVIIMTAYGTIESAIEATRKGAFDYVTKPFRKERILHVVDQALKWQQ 123 Query: 126 SID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 E + ++G S AM+ L ++I VA + ATVLI G+SGTGKELVAR Sbjct: 124 LQKENTYLRERLEGKSQFASLIGSSRAMRTLHNQIDRVAKTSATVLITGESGTGKELVAR 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 +H S R ++ + LNC+ L ES++ESELFGH +G+FTGA + ++G EA+ GTLFLD Sbjct: 184 ELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLIEEANHGTLFLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+S MQV+LLR +QE E + +GSN I VD+R IAAT+++L ++ G FR+DL+Y Sbjct: 244 EIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRGEFREDLFY 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ I VP LR+R +DIPLL FL+++ + K +K +P ++ L+ DWPGN+RE Sbjct: 304 RLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNALMQRDWPGNVRE 363 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTP---IPLGQSQDIQPL----------VEVEK 407 LEN +ER V++ +G + ++ L P PL DI + E + Sbjct: 364 LENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMPFKEAKDKLIEEFQS 423 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + I AL + GN ++AAR+ G+ R+ L + Sbjct: 424 QYISKALARHSGNVSQAARESGLKRQYLHRLMR 456 >UniRef50_Q39U11 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=Q39U11_GEOMG Length = 449 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 193/438 (44%), Positives = 287/438 (65%), Gaps = 7/438 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L+VDD+ + +L A+LR GY+V A +A + + ++ D V+ D++M DGI Sbjct: 8 KVLIVDDEPNALKVLAAILREEGYSVFKAGDAAEAEQALSKEDIDTVITDMKMPGKDGIQ 67 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 + + P IP++ +TAY SV++AV A+ GA Y IKP D+ L+ L +A+ S Sbjct: 68 LMDFMAEHYPDIPIIFLTAYGSVDSAVHAITRGAFYYFIKPPDYVKLKGILARAVEQ-RS 126 Query: 127 IDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + E + G +VG +P M + + V S ++VLI G++GTGKEL+AR+ Sbjct: 127 LKRELETLRKRVSGGTPARIVGATPEMLRIFETVEAVKDSMSSVLICGETGTGKELIARS 186 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S R +KP V +NCAA+ L+ESELFG+EKGAF+GA RR GRF EA GT+FLDE Sbjct: 187 LHYGSVRRDKPFVAVNCAAMPRELIESELFGYEKGAFSGAFSRRIGRFEEAAEGTIFLDE 246 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ +Q +LLR +QE+E++R+GSN+ I V+ RLI++T+R++ +E+ AG FR+DL+YR Sbjct: 247 IGELEMPLQAKLLRVLQEKEIERLGSNKKIKVNFRLISSTNRNIPSEITAGNFREDLFYR 306 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV ++VP LR RREDIPLLA ++ + R K V F + M + ++YDWPGNIR+L Sbjct: 307 LNVVQVQVPPLRDRREDIPLLAAELVREYGAREGK-VLRFDDEVMQVFLNYDWPGNIRQL 365 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNK 421 N +ERAVVL + I+ +ELP + + + Q ++ L E+E+ ILAALE++GGNK Sbjct: 366 GNIIERAVVLAKKDRITTKELPEELKPYVVRVESRQQVRTLRELEEAAILAALEESGGNK 425 Query: 422 TEAARQLGITRKTLLAKL 439 + AA+ LGI+RK L +L Sbjct: 426 SHAAKMLGISRKALYKRL 443 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 185/455 (40%), Positives = 268/455 (58%), Gaps = 17/455 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE- 61 + ILVVDD+ + +L L G+ V A SG +AL + ++ F L++ D+++ Sbjct: 1 MNRTKILVVDDEEGYRKVLYNALTERGFQVKTAASGEEALAEFKKNSFSLIVIDMKLPGS 60 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG+ L+ K +N +LIMTAY ++TAVEA++ GA +Y+ KP D + +E+ + Sbjct: 61 IDGLELLQRAKEMN-NASILIMTAYGGIDTAVEAMRRGAFNYITKPFSIDEIMLNIERMI 119 Query: 122 AHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 I+ + + ++G S +Q ++ I+ VA S ATVLI G+SGTGKE Sbjct: 120 EQNKIIEENNYLHSELEKAFGRKTIIGNSKEIQKVMDMISRVAFSSATVLITGESGTGKE 179 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARAIH + R K V +NCA L+E LLESELFGH +GAFTGA K ++G F EADGGT Sbjct: 180 LVARAIHFNGNRKHKKFVVINCATLSEHLLESELFGHVRGAFTGAIKDKKGLFEEADGGT 239 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LF+DEIGDI +Q ++LR +QE E +G +VDVR+IAAT++ L +V FR+ Sbjct: 240 LFMDEIGDIPTPVQAKILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLKKVRDKEFRE 299 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNV+ I++P LR+R+EDIPLL HF++++ ++ K +KG +P+ L Y WPG Sbjct: 300 DLYYRLNVINIKMPPLRERKEDIPLLIKHFIEKYNKKENKQIKGLSPETEMELYKYHWPG 359 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI--QPLVEVEK------- 407 N+RELENA+ERAV L I + + D+ P E K Sbjct: 360 NVRELENAIERAVTLTNEPIIPLHVILPIVRKEDGNNMLLDDLLSHPYKEARKKALDVFN 419 Query: 408 -EVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + ++ + K GN T AAR+ I R+ L L + Sbjct: 420 TKYVMNIINKNSGNVTNAARECKIERQYLQRMLKK 454 >UniRef50_UPI00016C54BB two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54BB Length = 463 Score = 603 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 184/453 (40%), Positives = 273/453 (60%), Gaps = 16/453 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + +L+VDD++ L L G+ + A + +RE D++L D+ M Sbjct: 7 NPRGKLLIVDDEVELMRALCESLTDAGFEARGLSDPALAADALREGEPDVLLSDLMMPGT 66 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DGI L+ +P + +IMT +++TAVEA+K GA DY++KP + L++A+ Sbjct: 67 DGIQLLRRCLEADPHLVGIIMTGQGTIQTAVEAMKAGAFDYVLKPFRLQQVLPVLDRAME 126 Query: 123 HTHSIDAETPAVT--------ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 + ++ +VG PA++ ++ I VAP+ ATVL+ G SGTG Sbjct: 127 VRRLRRENANLRRYVQRLTFESDRYRIVGSGPAVRKVVQLIEKVAPTTATVLVRGPSGTG 186 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KELVARA+H +SAR +KPLVT+NCA L E+LLESELFGHEKGAFTGAD+ + G F A+G Sbjct: 187 KELVARAVHGNSARRDKPLVTVNCATLQETLLESELFGHEKGAFTGADRPKPGLFEVAEG 246 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GTLF+DE+ +++P +Q +LLR +++ +RVGS Q DVR+IAAT++ L AE AGRF Sbjct: 247 GTLFVDEVAEMAPALQAKLLRVLEDGHYRRVGSTQEKRADVRIIAATNKPLEAEQKAGRF 306 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DL++RL+V+ +++P+L+ RRED+P L HFL + + P A LL YDW Sbjct: 307 REDLFFRLSVITVDLPALKDRREDVPELIQHFL--HTRQVGRGPMTVDPAARSLLCRYDW 364 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP------LVEVEKE 408 PGNIREL N +ERA +L G I+ +LP +A+ P ++ P L VE+ Sbjct: 365 PGNIRELANVLERAQILAEGSVITPDDLPDNLAAGSGPPAAGEEPAPTTGPDDLDRVERH 424 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + L + GGNK +AA+ LG++R+TL + + Sbjct: 425 HVRDVLHRHGGNKVQAAKALGVSRRTLYRLIDK 457 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 603 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 196/470 (41%), Positives = 284/470 (60%), Gaps = 32/470 (6%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL+VDD+ L+ WGY+V A++G L R + DLVL DVR+ +M Sbjct: 1 MPSEKILIVDDERLVRWSLRQKCEEWGYHVIEADNGSAGLRLARHESPDLVLLDVRLPDM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ LK++K A V+++TA +E ALK GA D++ KPLDFD L ++ AL Sbjct: 61 GGLEILKQLKENGDARAVIMITADPQLEDVKLALKLGAYDFVGKPLDFDELSVAVKNALE 120 Query: 123 HTH------SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEAT-VLIHGDSGTGK 175 T S+ E +VG S M L+ +A +A SEAT +L+ G+SGTGK Sbjct: 121 TTRLRTEVESLRGEVRRRHGY-HDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 +LVA+AIH S R EKP V +NC+A+ E+L+E+ELFGHEKGAFT A ++G F ADGG Sbjct: 180 DLVAKAIHYQSRRQEKPFVAINCSAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAADGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++SP++Q +LLR ++++ ++RVG + + VDVR+IAA++RDL V G FR Sbjct: 240 TLFLDEIGELSPLLQAKLLRVLEDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDGTFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 QDLYYRL ++++ +P LR R+EDI L F++R+ + +K+++G T LL+ +DWP Sbjct: 300 QDLYYRLAIISVFLPPLRDRKEDILPLVEFFIERYNRKFKKSIRGVTDNTRRLLMKHDWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAI------------ASTPIPLGQ-------- 395 GN+REL+NA+ERA++L E + LP A+ AS P P+ Q Sbjct: 360 GNVRELKNAIERAMILDEAENLRPDYLPFAVAQQQAMYTAFESASPPAPIQQLPNGRSLP 419 Query: 396 ----SQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + L EVE+ + A+++ GN+T AAR L I+R L KL + Sbjct: 420 RLVIPEGGTSLEEVERAFVEMAMKEANGNQTHAARLLDISRDALRYKLKK 469 >UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDW1_DESAA Length = 477 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 185/469 (39%), Positives = 272/469 (57%), Gaps = 28/469 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILV+DD+ + C + +L Y + A +G +A+E + ++ FDLV+ D++M Sbjct: 1 MPEPKAKILVIDDEEAICRNCEKILTRSNYEIKWALNGYKAMEMMYKEAFDLVITDLKMN 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M G+ L +K P V+++T Y+SV +AVE +KTGA DYL KP D L+ + +A Sbjct: 61 SMGGLEVLSRVKDEWPQTQVVVITGYASVSSAVEVMKTGAFDYLPKPFTPDELRGAVRQA 120 Query: 121 LAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 LA + P V + +VG SP MQ ++ +A AP++ VLI+G+SGTGK Sbjct: 121 LAPEELFNNAKPDVKKISRKITTHQLVGDSPQMQGVIRMLAKAAPTDTNVLIYGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E++ARAIHA+S R + ++C AL E+LL+SELFGH KGAFTGA K ++G F ADGG Sbjct: 181 EVIARAIHANSRRKGEVFFAVDCGALAENLLQSELFGHTKGAFTGAVKDKKGIFELADGG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDE+ IS +Q LLR ++ REV VG + VDVRL+ AT++DL V+ G+ R Sbjct: 241 TVFLDEVSSISMSIQSNLLRFLETREVLPVGGAAPVKVDVRLVFATNQDLKEMVSQGKLR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +D YYR+ V I P LR+RR DI +A HFL F+ K ++ F+P A ++L+ + WP Sbjct: 301 EDFYYRIMVYPIFTPPLRERRADILPIAYHFLDLFSHSMSKDIRSFSPDAAEILLDHSWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPL--------------------AIASTPIPLGQ 395 GN+R+L NA+ERAV+L G I+ REL + + L + Sbjct: 361 GNVRQLRNAIERAVILCEGRTITARELEHLQDKPGEEHHQAAYTITHDYQVPANAEELKE 420 Query: 396 SQDI---QPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++ I + +VE++ + ALE GN T AA Q G+ R + + Sbjct: 421 AKKIIRQLAVEQVERDFLTQALENADGNITRAAEQAGMQRSNFSNLMKK 469 >UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MTS9_9DELT Length = 465 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 187/443 (42%), Positives = 270/443 (60%), Gaps = 8/443 (1%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +LVV+DD + +LQ L GY V +A G L + R++ F++VL DV+M +DGI Sbjct: 10 AKVLVVEDDSALRELLQMELARSGYKVEVALDGEDGLRKYRDENFNVVLLDVKMPGVDGI 69 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 TL++++A +++ T + S+ETAVE +K GA DYL KP+ D L+ ++KA Sbjct: 70 ETLRQMRAETIVPEIIMFTGHGSIETAVECIKYGAYDYLTKPVKLDELEMVIDKAYEKNR 129 Query: 126 ----SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 +I+ + +VG+SPA+ +L + P+E VLI+G+SGTGKEL++RA Sbjct: 130 LRLENINLKLEVSKLDNHRVVGRSPALMKVLDVVRRWGPAEEHVLIYGESGTGKELISRA 189 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H +S R+EKP VT+NC LN + ESELFGH +GAFTGA+K R G F AD GTLF+DE Sbjct: 190 VHDASPRAEKPFVTVNCGRLNINTAESELFGHTQGAFTGANKGRAGLFELADTGTLFMDE 249 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 + + +QV+LLR ++ +R+G N ISVDVR + A++++L VN G FR+DLY+R Sbjct: 250 VSETPLDVQVKLLRVLETGTFRRMGGNHDISVDVRFVFASNKNLQECVNRGEFREDLYHR 309 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 +N++ I +P LR+R EDI LA F++ A R + + T +AM L Y WPGN+REL Sbjct: 310 INLLPINLPPLRERPEDILPLAYFFMKSAAGREDENWE-ITEEAMAALTAYSWPGNVREL 368 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ---PLVEVEKEVILAALEKTG 418 N + RA +L T + I+ LP + P S PL VE++ I LE+ Sbjct: 369 RNTIRRACILATDQQITSELLPFSPPRVLPPRQVSPAAPTQLPLWVVERDHIERVLEQVE 428 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 GNK+ AA+ L I RKTL KL R Sbjct: 429 GNKSRAAKILEIDRKTLYTKLER 451 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 204/456 (44%), Positives = 277/456 (60%), Gaps = 22/456 (4%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILV DD+ S IL +L G GY+V G AL+++ + +D++LCDVRM + DG+ Sbjct: 6 TILVADDEPSIRHILTLVLTGHGYDVRAVADGEDALKELAARDYDVLLCDVRMPKKDGLV 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+E A +PA+ ++M+AY S E A++A+ GA DY+ KP D + L KA Sbjct: 66 VLREALASHPALTAVVMSAYGSQEQALQAVAAGAFDYVQKPFKPDEIVFVLRKAEERERL 125 Query: 127 IDAETPAVTAS-----QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + AS ++G+SPA+ LL ++A +AP + TVLI G+SGTGKEL+AR Sbjct: 126 VRENRRLKQASLPSTPGGHILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIARE 185 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S R+ V +NC A+ L+ESELFGH KGAFT A + G F EADGGTLFLDE Sbjct: 186 LHVRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGTLFLDE 245 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 +G++ QV+LLR +QE E++ VG N++ V+VR++AAT RDL+ V G FR+DLYYR Sbjct: 246 VGELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFREDLYYR 305 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRK--AVKGFTPQAMDLLIHYDWPGNIR 359 LNVV + VP LR+RRED+PLLA F+ RF + V G T +A LL Y WPGN+R Sbjct: 306 LNVVNLRVPPLRERREDVPLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAWPGNVR 365 Query: 360 ELENAVERAVVLLTGEYISERELPLAI--ASTPIPLGQSQDIQP-------------LVE 404 ELENA+ERAV+L +I LP + AS P P G+ P + E Sbjct: 366 ELENAMERAVLLADEPHILPANLPERLWAASPPGPHGEKPHGDPVLQGGGDLSLKRAIRE 425 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +E+ I AAL KT GN+T AA L I+ + LL K+ Sbjct: 426 LEESYIRAALRKTKGNRTRAAELLDISHRALLYKIK 461 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 186/442 (42%), Positives = 270/442 (61%), Gaps = 8/442 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDDD T+++A L G GY V LA G +AL +E+V+ + D++M EMDG+ Sbjct: 5 KILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKMEEMDGMV 64 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+++ + P +PV+I+TAY ++ AVEA K GA D++ KP + +L LEKAL S Sbjct: 65 LLEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYRLEKALE-VGS 123 Query: 127 IDAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E + ++ S MQ +L +++ +A +++TV ++G+SGTGKEL+A+ Sbjct: 124 LRMEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKELIAK 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 +H +S RS P V +NC A+ E LLESELFGH KGAFTGAD+ ++G +A+ GTLF+D Sbjct: 184 VLHLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQQAERGTLFMD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EI +++P +QV+LLR Q+ E VG Q + VD RL+AAT++DL + G+FR+DLYY Sbjct: 244 EIAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFREDLYY 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 R++V+ + +P LR+R EDIPLLA HFLQ F K + GF+P AM L+ + WPGN+RE Sbjct: 304 RIHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLMLHRWPGNVRE 363 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI-QPLVEVEKEVILAALEKTGG 419 L N VERAVVL I L L + + + E E+ ++ L T G Sbjct: 364 LANVVERAVVLAREGNICAEHLLLEREAVSDSGTELPPLTAARDEFERAYLIQVLHSTKG 423 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 N + AA + G R L + Sbjct: 424 NVSRAAAKAGRYRAEFYKLLRK 445 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 193/471 (40%), Positives = 274/471 (58%), Gaps = 35/471 (7%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MTH ILV DD+ L ++ R GY V++A S +AL DL L DV + Sbjct: 1 MTH----ILVADDEAGIRETLSSIFRDEGYRVSVAASLDEALRIGEVDPPDLALVDVWLG 56 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 E DG++ L+EI L V++M+ + +++TAV+ALK+GA DY+ KP D + A Sbjct: 57 EDDGLSYLQEIARLPDPPAVVVMSGHGTIDTAVKALKSGAADYIEKPFSLDRVLTVAANA 116 Query: 121 LAHTHSIDAETPAVTAS---QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 L ++ E A+ ++ MVG SPA++ L +A VAP+E VLI G++GTGKEL Sbjct: 117 L-KLRGLERENRALREKVSARYEMVGDSPAIEALRELVARVAPTEGWVLITGENGTGKEL 175 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VAR++H S R P V +NCAA+ E+L+ESELFGHEKGAFTGA RR G+F +A GG L Sbjct: 176 VARSLHEGSVRRSGPFVDVNCAAIPETLIESELFGHEKGAFTGALSRRPGKFEQASGGVL 235 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGD++ Q R+LR +QER++ R+G + I VDVR++AAT+RDL + FR+D Sbjct: 236 FLDEIGDMALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAATNRDLPGMIARKEFRED 295 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRLNVV+I VP LR+R DIP+L HF++ K F+ +A++ L WPGN Sbjct: 296 LFYRLNVVSIRVPPLRERLSDIPILVEHFVEILCRDFGHRPKLFSREALEALCERTWPGN 355 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQS--------------------- 396 +REL+N VER ++L G I R+L AI T ++ Sbjct: 356 VRELKNTVERLLILAPGPVIEVRDLEPAIPGTTDRGAEASRGETGEGRGGSPPDPGPGAS 415 Query: 397 --QDIQPLVE----VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + PL E E+ +L L + GN AA++LG+ R +L ++ + Sbjct: 416 GMEPDLPLREARDRFERGYVLGVLARCEGNIARAAQRLGMDRTSLHRRIRQ 466 >UniRef50_B5JMF6 Sigma-54 interaction domain family n=2 Tax=Verrucomicrobia RepID=B5JMF6_9BACT Length = 518 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 198/500 (39%), Positives = 283/500 (56%), Gaps = 67/500 (13%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL++DD++ L+ LR ++V + +A E + + +DL+ DV + + +G Sbjct: 5 RILILDDELVIRKALEEQLRRKRFSVCSVGTLSEADEHLSKDEYDLLFVDVHLPDGNGTE 64 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+ + ++ V+I+T Y +VE+AV+ ++ GA DY+IKP + ++KA + Sbjct: 65 LLERVSSMQNPPLVVIITGYGTVESAVKCMQAGAFDYIIKPFSSSQIDVLIKKARDYRQL 124 Query: 127 IDAETPAVTAS--QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 + + S ++GKS + L I VAP+EATVLI G++GTGKELVA ++ Sbjct: 125 VRVNQFLASESTVSGELIGKSGFINQLKDVIRKVAPTEATVLICGENGTGKELVANELYR 184 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 SAR P + +NCAA++ESL+ESE FGHEKGA+TGA +RREGRF ADGGT+ LDEI + Sbjct: 185 CSARKSAPFIRVNCAAISESLIESEFFGHEKGAYTGATQRREGRFELADGGTILLDEISE 244 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 ISP +Q +LLR +QERE +RVG N+ I VDVR+IA T+R+LA V G FRQDLYYRLNV Sbjct: 245 ISPKVQAKLLRVLQEREFERVGGNKTIKVDVRVIATTNRNLAQSVERGMFRQDLYYRLNV 304 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 I+VP LR R D+ LLA +F Q F ++ K +KGF P+A++ L + WPGN+REL+N Sbjct: 305 FPIQVPPLRDRDGDVVLLAKNFAQSFGRKHGKQIKGFAPEAVEALERHPWPGNVRELQNT 364 Query: 365 VERAVVLLT-GEYISEREL----------------------------------------- 382 VERAV+L G+ I++ L Sbjct: 365 VERAVILAESGQPIAQGHLGLFAMPTNVMAPPAGHPYPPVEAAGAAYGGGYPPQSAPPPV 424 Query: 383 -------PLAIASTPIPLGQSQDIQP----------------LVEVEKEVILAALEKTGG 419 P A+ P+ QP L E+EK+ ILA LE T G Sbjct: 425 NGGFYEAPPAMPPQPVSQSVPAASQPSSASGSETTTVAPPLPLEEIEKKHILATLETTDG 484 Query: 420 NKTEAARQLGITRKTLLAKL 439 N+T+AA+ LGI+ +TL K+ Sbjct: 485 NRTQAAKLLGISIRTLRNKI 504 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 182/447 (40%), Positives = 276/447 (61%), Gaps = 8/447 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ N IL++DD+ H ++ GY +A SG+ L+ + + D+V+ D+ M Sbjct: 1 MSQYNTTILIIDDNEEHANATAEAIQKVGYKCIVATSGKAGLKIIETEEIDVVITDLIMH 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ LK K P ++++T Y +VETAV+A++ GA +L+KP++ ++L+A + K Sbjct: 61 DFSGMEILKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLRAEINKL 120 Query: 121 LAHTHSIDAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + + + G++G S +MQ +L+ + ++ + ATVLI G+SGTGK Sbjct: 121 VEKQNLVRNNILLQKQLDEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLITGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+A+ IH +S R PLV LN AA+ E++LESELFGHEKG+FTGA +R+G+F A G Sbjct: 181 ELIAKTIHNNSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQRKGKFEYAHRG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T FLDEIGD+ Q +LLR +++ + R+GSN+ I VDVRLIAAT+++L + G+FR Sbjct: 241 TFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGNLIKEGKFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLY+RLNV+ I++P LR+R EDIPLL F++ F+ K + TP+A +L+ Y WP Sbjct: 301 EDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKEILQITPEARKILLRYQWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI---QPLVEVEKEVILA 412 GNIREL+N +E VV+ T +Y+ +LP I + S + + + E E+I Sbjct: 361 GNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMPVSHGLMAGMTMEDAEIELIKC 420 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKL 439 L GGN+ EAAR LGI +TL KL Sbjct: 421 TLASVGGNREEAARMLGIGERTLYRKL 447 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 172/455 (37%), Positives = 268/455 (58%), Gaps = 16/455 (3%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 T IL+VDD+ + ++ +L+ ++ A +G L+++ L+ D+ M + Sbjct: 6 TMHTNSILIVDDEKAARYGMKKILQRDHGSIFEATNGIDVLQKIHTLQPALIFLDINMPQ 65 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG+ TL++I+ + V+I+TA+ S + AVEA+K GA DY+ KP + + L+ AL Sbjct: 66 LDGLKTLEKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYDYIAKPYEMEELRIITRNAL 125 Query: 122 AHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + T ++G+S MQ + I V ++ TVL+ G+SG+GKE Sbjct: 126 EKIALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGESGSGKE 185 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L A IH S R P + +NCAA+ E+L+ESELFGHE+G+FTGA +RR G+F A+ GT Sbjct: 186 LAAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATERRMGKFEMANNGT 245 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 + LDEIGD+S Q +LLR +QE++ +R+G + ++VDVR+I+ATHRDL E+ GRFR+ Sbjct: 246 ILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEEGRFRE 305 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYR+NVV I++P LR+R+EDIPLL F+Q F++++ K V + AM L Y+WPG Sbjct: 306 DLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVVSISNDAMKKLSAYNWPG 365 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-----------PLVEV 405 NIR+L+N +E A+VL + + +L I ++++ + Sbjct: 366 NIRQLKNTIESAIVLTNNDVLDISDLSEDIIREEKTPDSTKNVHYHLSFREAKKILIENF 425 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 EK+ I LE+ GGN + A L + R+ L K+ Sbjct: 426 EKDFISKKLEECGGNISHTAEALDMHRQNLQQKIK 460 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 167/446 (37%), Positives = 269/446 (60%), Gaps = 11/446 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 ++ILVVDD+ + +++ +L GY V S A + +++ +D++ DV + + +G+ Sbjct: 2 LNILVVDDEKNIQDLMKDILTDEGYYVGTTGSITTAKDFIKKNSYDVIFLDVWLPDGEGL 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA---LA 122 L IK +P V++++ ++++ AV+A+K GA D+L KPL + + AT+EK + Sbjct: 62 DLLPFIKENSPNSSVVMISGHANIPIAVKAIKEGAFDFLEKPLSTETIMATIEKVEKQIK 121 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 S++ Q ++G SP + L +I VA + A V+I G++GTGKELVA++I Sbjct: 122 VKQSLEY-FKEKEEKQIEIIGNSPKIVELKRQIEKVAKTNAWVMILGENGTGKELVAKSI 180 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R + P V +NCAA+ + L E+E FG+EKGAFT A R+ G+ AD GTLFLDE+ Sbjct: 181 HYQSPRKDYPFVDINCAAIPDELFEAEFFGYEKGAFTNAFTRKIGKLELADKGTLFLDEV 240 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 D+S Q +LLR ++E++ R+GSN I+VD+R+I+AT++D+ EV G FRQDL +RL Sbjct: 241 ADMSLSSQAKLLRVLEEKQFSRLGSNTKITVDLRVISATNKDIQKEVEKGTFRQDLAFRL 300 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 +V+ I VP LR+R EDI LLA +FL++F+ N+ + + + ++Y+WPGN+REL+ Sbjct: 301 SVIPIYVPPLREREEDILLLANYFLRKFSVENKVEPPILSDEVKNTFLNYNWPGNVRELK 360 Query: 363 NAVERAVVLLTGEYISERELPLAI-------ASTPIPLGQSQDIQPLVEVEKEVILAALE 415 N +ER V+L + I ++LP + IP+ E+EK++I AL+ Sbjct: 361 NLMERLVILNSESIIYNKDLPPHMLGNVKLEKEESIPITIRPLKDAKEELEKQMIKKALK 420 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 N E A+ L I +L K+ + Sbjct: 421 VYNNNLKEIAKALDIDLSSLYRKIKQ 446 >UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSV7_THISH Length = 455 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 195/449 (43%), Positives = 270/449 (60%), Gaps = 10/449 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + +I VDDD + G + V + +QAL EQ DL++ D+ M Sbjct: 1 MS-EAANIFFVDDDPRAGELFLRFCEGTPHQVHVFRDPQQALTAFIEQGADLIITDLAMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ L I+ ++ +PV+I+T YSSV+ A+EAL+ GA D++ KP D D L +E+ Sbjct: 60 GLSGMDLLSRIRDVDSDVPVIIITGYSSVDNAIEALRLGATDFIKKPYDTDELLLLIERT 119 Query: 121 LAHTHSIDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 L + E + ++GMVG AM+ + I VA V+I G+SGTG Sbjct: 120 LE-GERLKRENRLLKRQLKDERLRYGMVGHGDAMESVYRLIDKVADIRCNVIIEGESGTG 178 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KELVARAIH ++KP V ++C A+N++LLESELFGHEKGAFTGA + G A G Sbjct: 179 KELVARAIHTQGPDADKPFVVIDCGAINDTLLESELFGHEKGAFTGAAHTKAGLLETATG 238 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GT+FLDEI +IS MQV+LLR +QE++V RVGS + I +DVR IAAT+R+L A + AG F Sbjct: 239 GTVFLDEICNISDAMQVKLLRVVQEQQVMRVGSVRPIPIDVRFIAATNRNLEAMIEAGEF 298 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R DLY+RLNVV I +P LR RREDIP L F++ FA+R + V+GF P A++ L YDW Sbjct: 299 RHDLYHRLNVVQIHMPPLRARREDIPPLVQAFVEEFAKRYHRQVEGFDPHALERLQTYDW 358 Query: 355 PGNIRELENAVERAVVLLTGEYISER-ELPLAIASTPIPLGQSQDIQP-LVEVEKEVILA 412 PGN+REL N VER + L G + + P A++ QP L +E+ IL Sbjct: 359 PGNVRELRNLVERTIALADGPVLHLDRQWPSTGAASTAAAQALDADQPDLATLERRYILK 418 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L++ GN+ + AR LGI + TL KL + Sbjct: 419 TLQRLDGNREQTARALGINKSTLWRKLQQ 447 >UniRef50_A0LL20 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL20_SYNFM Length = 441 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 181/442 (40%), Positives = 265/442 (59%), Gaps = 3/442 (0%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M + ILV+DD +LQ L G+ V + +A+ + Q LV+ D+RM Sbjct: 1 MADERTSILVIDDSRDTLEVLQRNLVSRGFQVLAVSEVSEAIRLLETQNISLVITDIRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++DG + ++ ++ + VL +T + +++ A+ A+KTGA +YLIKP + L + ++ A Sbjct: 61 KVDGFSVIRHVRENCKGVEVLAITGFPTIDGAIRAMKTGAGEYLIKPFTDEELFSAIDHA 120 Query: 121 LAHTHSIDAETP-AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 LA +P A Q+G++G+S AM + I A S ATVLI G+SGTGKEL+A Sbjct: 121 LARLRLKKQASPSAAPRRQYGIIGESRAMMQVYEAIEHAASSSATVLIQGESGTGKELIA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH S R+ P V +NC + E LLESELFG+ KGAFTGA R G F AD GT+ L Sbjct: 181 RAIHYGSRRAGFPFVPVNCGGIPEPLLESELFGYTKGAFTGAAGSRAGFFQTADRGTILL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEI + S MQ++LLR +QE E+ +GS++ V++R++AAT+R L V G FR+DL+ Sbjct: 241 DEISEASLPMQIKLLRVLQEGEICMLGSSKPRKVNIRIVAATNRVLHELVRQGLFREDLF 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNV+ I+ P LR R +DI LL HF++ F+ER + + + +L Y WPGN+R Sbjct: 301 YRLNVITIDAPPLRDRGDDIVLLVNHFVKTFSERYGRTPPRLSEALLGILRAYHWPGNVR 360 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGG 419 ELEN + R + + + + +LP + + + G+ + L EVE E + L+ GG Sbjct: 361 ELENVIHRLLSMPSSTTLDIPDLPPFMRFSAV--GEGSLNRTLAEVEAEHVRRVLDSVGG 418 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 NKT AAR LG+ RKTL AKL + Sbjct: 419 NKTLAARILGVDRKTLRAKLRK 440 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 190/446 (42%), Positives = 276/446 (61%), Gaps = 8/446 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ IL+V+DD + ++L A+L GY + G+ AL+ ++ Q FDLVL D+R+ Sbjct: 1 MS-KTARILLVEDDATFRSLLAAILDDEGYELVEREDGKAALKTLQRQSFDLVLSDLRLP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPL-DFDNLQATLEK 119 ++G+ + +A A P +++TA+ +VE AV A+K G D+L KPL D L+ + + Sbjct: 60 GLNGLELFRRAQAEGIAPPFVLLTAFGTVEEAVAAMKEGVADFLTKPLKDPATLRVLVRR 119 Query: 120 AL-----AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 L + + E ++ AMQ + + IA VAP++ATVLI G+SGTG Sbjct: 120 TLAVSMQERSLQVLQERDTAGLPPDEVLFAGQAMQQVRTLIADVAPTQATVLISGESGTG 179 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KEL AR IH +S R + P V LNCAA+ E+LLESELFGHEKGAFTGA + R+G+F A G Sbjct: 180 KELAARMIHRASPRRDAPFVALNCAAIPETLLESELFGHEKGAFTGATQARQGKFELASG 239 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GTLFLDEIG++ +Q + LR +QER +RVG N+ + DVR+IAAT+RDL EV RF Sbjct: 240 GTLFLDEIGELPLALQSKFLRVLQERVFERVGGNRELRADVRIIAATNRDLEEEVRVRRF 299 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DLYYRL+V I +P+LR RR+ +P+L + L+R A + + V+ QA+ + Y W Sbjct: 300 REDLYYRLHVFPIHLPALRDRRDGLPVLVRYLLRRAAIQTGREVQDIEQQALAAVAEYGW 359 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAAL 414 PGNIREL+N +ERAV+L G+ ++ +LP + + L + E+ IL AL Sbjct: 360 PGNIRELQNVIERAVILCKGQ-VTLLDLPGGVRQVTASGVIPKSNGSLRDRERNDILDAL 418 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLS 440 G N+ AA +LGI+++TL +L Sbjct: 419 ATCGNNRRLAAEKLGISKRTLQYRLK 444 >UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulator n=5 Tax=Cystobacterineae RepID=Q1D3M5_MYXXD Length = 457 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 207/449 (46%), Positives = 280/449 (62%), Gaps = 12/449 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ +LVVDD + +L+ L GY V +A G A+ Q+R +V+D VLCD+RM Sbjct: 1 MS-SRARVLVVDDHVEMGQMLKEPLTDDGYKVDIATGGADAIAQLRARVYDAVLCDLRMQ 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++DG L + L+P +PV++MTA+ VE+AVEA+K GA Y KP D ++ +LE+A Sbjct: 60 DVDGFDVLDAARKLDPDLPVVMMTAFGGVESAVEAMKRGAFHYFTKPFRLDEVRLSLERA 119 Query: 121 LAHTHSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + A +VG S AM+ L + I VA S A VL+ G+SG+GK Sbjct: 120 LEQRRLRTEHRTLKQQAADRGGLGALVGSSTAMRDLYALIERVAWSGAPVLVRGESGSGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARA+H R P V +NC AL +LLESELFGH KGAFTGA R G FVEADGG Sbjct: 180 ELVARALHFEGTRRAGPFVAVNCTALPHALLESELFGHVKGAFTGATTARRGLFVEADGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIGD++P +Q RLLR +++ EV+ VG++ +VDVR++AATH+DL V GRFR Sbjct: 240 TLFLDEIGDMAPELQARLLRVLEDGEVRAVGADGSRTVDVRVVAATHQDLETRVKEGRFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA-VKGFTPQAMDLLIHYDW 354 D++YRLNVV + +P LR+RREDIP L HFLQ+ RN ++ V+ F+P+ + L W Sbjct: 300 ADVFYRLNVVTLRLPPLRERREDIPALIEHFLQQAKARNPRSVVQRFSPETLAALGALPW 359 Query: 355 PGNIRELENAVERAVVLLTGEYISE----RELPLAIASTPIPLGQSQ-DIQPLVEVEKEV 409 GN+RELEN V+R VVL + E + LP + PL +Q I PL ++E E Sbjct: 360 AGNVRELENLVQRLVVLGSTEVVDLPQLRPHLPSDTSQENHPLAAAQRTIVPLRQLETEY 419 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAK 438 I A+ + GGNKT+AA LGI T+ + Sbjct: 420 IAWAVARCGGNKTKAAELLGIDVSTIHRR 448 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 194/442 (43%), Positives = 269/442 (60%), Gaps = 9/442 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 + +ILVV+DD +L +L+ G+ V +A G + L ++R++ FDLVL D++M G Sbjct: 2 SANILVVEDDAGFSELLATILKDDGHMVTIATDGGEGLRRIRQERFDLVLSDLKMPVKSG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPL-DFDNLQATLEKALAH 123 + +E + + +TA+ VE AV A+K GA D+L KPL D +L+ ++++AL Sbjct: 62 LELFRETRQDAAPPLFIFITAFGKVEEAVAAIKEGAFDFLTKPLKDPRSLRDSVKRALES 121 Query: 124 THSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + ++ AM + I VAPS ATVLIHG+SGTGKELV Sbjct: 122 VERERLFISLKDMERSGLPPDELIFSGSAMDAVRKMIYDVAPSTATVLIHGESGTGKELV 181 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 AR IH S R + LNCAA+ E+LLESELFGHEKGAFTGA + R G+F A+GGT+F Sbjct: 182 ARMIHLLSKRKGAAFIPLNCAAIPENLLESELFGHEKGAFTGAMQARRGKFELAEGGTIF 241 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG++ ++Q +LLR +QER +RVG + I +VR+IAAT+RDL EV RFR DL Sbjct: 242 LDEIGEMPALLQAKLLRVLQERVFERVGGSMQIRTNVRVIAATNRDLNREVAEKRFRDDL 301 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRLNV I VP LR R + + LA +F RFA + K +KG P+A+ L+ Y WPGNI Sbjct: 302 FYRLNVFPITVPPLRARLDALAGLARYFCARFAVKTGKKLKGINPEALRLMKAYHWPGNI 361 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTG 418 REL+N +ER V+L E ++ ELP IA G I L ++E+ IL AL+ Sbjct: 362 RELQNVIERGVILAR-EELTAPELPAMIAGKETEGGPKVGI--LKDIERNCILEALKNNR 418 Query: 419 GNKTEAARQLGITRKTLLAKLS 440 GN+ AA LGI+++TL +L Sbjct: 419 GNRRMAAETLGISKRTLQYRLK 440 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 175/440 (39%), Positives = 261/440 (59%), Gaps = 7/440 (1%) Query: 9 LVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATL 68 L+VDD+ + + ++ G A G++A+ ++ + FD++ DVRM M G+ L Sbjct: 11 LIVDDEPVVRSGISRIVTHMGLKPDDAADGKEAISKMSDSYFDIIFLDVRMQGMGGMEVL 70 Query: 69 KEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL------A 122 IK N + V+++T + + ++A+K GA DYL KP D+++ +++A A Sbjct: 71 GWIKDNNISSLVVMITGVTEPDIIIQAMKMGAFDYLAKPFGVDDIENIIQRAEKASAPPA 130 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 T I M+G SP MQ+L S + VAP++ TVLI G+SGTGKELVARAI Sbjct: 131 QTIGIPKSKGLQAGPDRIMLGSSPVMQNLFSRMLKVAPTDGTVLITGESGTGKELVARAI 190 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R E V ++C+AL E+LLESELFGH KG+FTGA + ++G F A+ GT F DEI Sbjct: 191 HYHSRRRENEFVPVDCSALVENLLESELFGHVKGSFTGALQSKKGLFELANHGTFFFDEI 250 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 ++S +Q +LLR IQERE +VG I VD+R++ A++RDL A + +FR+DL+YRL Sbjct: 251 SNLSMDIQAKLLRVIQEREFTQVGGAVRIKVDLRIMVASNRDLRAAIAENKFREDLFYRL 310 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 +V+ I +P LR+R +DI L +F+ + + + + +AMD+L+ Y WPGN+RELE Sbjct: 311 HVIPIHLPPLRERGKDIEELVNYFVLHMSRKIGREAPKVSREAMDVLLSYAWPGNVRELE 370 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD-IQPLVEVEKEVILAALEKTGGNK 421 N +ER ++L I LP I P L D + L ++E++ I L +T G Sbjct: 371 NTIERTLILKDDAVIKPEHLPQDIRQQPPDLRSFSDKMVSLKDLERDYIRFVLSRTNGGI 430 Query: 422 TEAARQLGITRKTLLAKLSR 441 +AA LGI RKTL K+ + Sbjct: 431 QKAAGILGINRKTLSMKMKK 450 >UniRef50_D2QY56 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY56_9PLAN Length = 483 Score = 599 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 190/447 (42%), Positives = 269/447 (60%), Gaps = 18/447 (4%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 +ID+LVVDDD + L G+ + A + ALE + FD+ + D++M M Sbjct: 5 THIDLLVVDDDQEFRETVVKRLSRSGFRLQDAPTAEAALELAERRDFDVAVFDMQMPGMS 64 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ L K +P V+++T S+E+AVEA++ GA DYL KP +L+ +EKA Sbjct: 65 GLDLLAAFKTKHPDCEVILLTGQGSIESAVEAMRMGAFDYLTKPFPLRDLEVRIEKAYD- 123 Query: 124 THSIDAETP------AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 H + E A +A M+GKS AMQ L I PSE +LI G+SGTGKEL Sbjct: 124 RHLLRKENQQLKTILARSAPGSTMIGKSVAMQELQRLIQRAGPSEKAILIQGESGTGKEL 183 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARA+HA+S+R+++P+V +NCAAL E LLESELFGHEKGAFTGA + G F ADG TL Sbjct: 184 VARALHAASSRADRPMVVINCAALPEPLLESELFGHEKGAFTGAVAAKPGLFEVADGSTL 243 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 F+DEIG++ +Q +LLR +++ ++R+GS Q V+VR++AAT+R + EV AG FR+D Sbjct: 244 FIDEIGEMPGSLQAKLLRVLEDGSLRRIGSLQERRVNVRILAATNRSMQDEVTAGNFRED 303 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYR+NV+++E+P LR R DIPLL HFL + P A+ L Y WPGN Sbjct: 304 LYYRINVMSLELPPLRSRTADIPLLVEHFLGK--------DWRIEPTALSALEQYAWPGN 355 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLG---QSQDIQPLVEVEKEVILAAL 414 +R+L NA+ERA ++ G I +LP + + DI L ++++ I+ L Sbjct: 356 VRQLINAIERAKIMADGRTIRANDLPTEVLHALPQIELPPSLDDIDDLSAIQRQKIVEVL 415 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 ++ GNK+ AAR LGI R+ L L + Sbjct: 416 KREKGNKSRAARMLGIDRRKLYRLLEK 442 >UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=D2L4Q3_9DELT Length = 453 Score = 599 bits (1547), Expect = e-170, Method: Composition-based stats. Identities = 187/440 (42%), Positives = 264/440 (60%), Gaps = 3/440 (0%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 IL VDDD +L+ L GY+V A G +ALE + ++ LV+ D+RM Sbjct: 5 AQTRKTILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVKLVISDIRMPG 64 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 MDG+ L+E++ +P++ +TA+ S+ AVEA+K GA+DYL KP D L + + Sbjct: 65 MDGMRLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEVF 124 Query: 122 AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 A DA T + G+VG+S AM+ L + I VAP + VL+ G+SGTGKELVA Sbjct: 125 ARAAGNDA-TRERDLGESGLVGQSEAMRDLAAMIERVAPRDVNVLVLGESGTGKELVANL 183 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R PLVT++C + LLESELFGH KG+FT A K ++G +A+ GTLFLDE Sbjct: 184 IHRRSPRKNGPLVTVDCGSTPAGLLESELFGHVKGSFTHAVKDKKGLIEQANQGTLFLDE 243 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG+IS MQ+RLLR ++ ++R+G + I VD R+IAAT+ D+ +V G FR+DL YR Sbjct: 244 IGNISTEMQIRLLRFLENHRIRRIGDVREIQVDCRVIAATNADIFEQVAEGVFREDLLYR 303 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L VV I VP LR+RREDIP+LA HF ++F + M L+ Y WPGN+R+L Sbjct: 304 LKVVTINVPPLRERREDIPILAEHFTRQFCAAQGMPPVTVPAETMAYLMAYPWPGNVRQL 363 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNK 421 NA+E VVL TG ++ ++L L +A ++ + L E EK I+ ALE+ + Sbjct: 364 RNALEAGVVLCTGGVLAPKDLQLPLAGKG--PDRAGESLSLDESEKTAIVRALEQANWVQ 421 Query: 422 TEAARQLGITRKTLLAKLSR 441 AA LG++R+ L K+ + Sbjct: 422 KAAAPLLGVSRRALNYKIQK 441 >UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZR73_OPITP Length = 452 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 188/447 (42%), Positives = 273/447 (61%), Gaps = 6/447 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ ILVVDD+ + C +Q L+ G+ V AN G AL + ++ ++LV+ D+RM Sbjct: 1 MSEPKARILVVDDERALCAGIQEALQREGHQVDAANDGASALRLLTQKAYNLVVTDIRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 E+DG+ LK +A ++MTA+ VETAVEA++ GA DYL KP+D L+A + KA Sbjct: 61 ELDGMQLLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPVDLKRLRAVVAKA 120 Query: 121 LAHT----HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 L + + A ++G+S M+ +++ VA S+ TVLI G+SGTGKE Sbjct: 121 LELQTVVAENSELRQRLQRAEPGLLLGESEPMRKVVAMAEEVAQSDVTVLIEGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVAR IH SAR++KP + +NCAAL ESL+E+ELFGH KG+FTGA + GRF ADGGT Sbjct: 181 LVARLIHTRSARAKKPFIFVNCAALTESLVEAELFGHAKGSFTGAVADKLGRFHLADGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIGD+ Q LLR +++ + VG ++ V+VR+I AT++ L V AG+FR+ Sbjct: 241 LFLDEIGDLGAKGQGDLLRVLEDGAFRMVGGTELQRVNVRVITATNKRLQEAVAAGKFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRL +V I VP LR+R EDIPLL FL+ F +++++ + + +A+ + + WPG Sbjct: 301 DLFYRLQIVPITVPPLRERAEDIPLLIDAFLEHFVQKHKRRRRRLSTEAVQVCRRFPWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLG--QSQDIQPLVEVEKEVILAAL 414 N+R+L N +ER VV + ELP + + + L E EK +I L Sbjct: 361 NVRQLRNVIERLVVTSPNAVVGVEELPDFLVAHDRSTNFFTVRVGMTLAEAEKLLIRQTL 420 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 + N+ EAA+ LGI+R+TL KL + Sbjct: 421 SQLTSNREEAAQALGISRRTLQYKLKQ 447 >UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZKW7_BREBN Length = 459 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 174/454 (38%), Positives = 267/454 (58%), Gaps = 18/454 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 H + IL+VDD+ +L + L+ GY A+ G A + V + ++L D++M M Sbjct: 2 HTDTRILIVDDEADFRHLLTSRLKRKGYTTLEASDGISAQKLVTSETIHVILLDLKMPGM 61 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG++ L+ K +PAI ++++T + ++ETA+EA+K GA DYL KP + + L+ + KA+ Sbjct: 62 DGLSFLQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPYNLNELEVLISKAVE 121 Query: 123 HTHSIDAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + A + F +V +SP ++ +L+ VA ++ VL+ G+SGTGK+ Sbjct: 122 KQQLTEENQQLREALSTNGKTTFQIVAESPKLKEVLATAKRVASTDFLVLLKGESGTGKD 181 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 ++AR I+ S R+ K V +N A+ E++LESELFGHEKGAFTGA +++G A GT Sbjct: 182 VIARLIYEYSERASKAFVPINLGAIPETMLESELFGHEKGAFTGATAQKKGLVEIAHQGT 241 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDE+GD+ +QV+LLR ++ E +R+GS + VDVR+IAAT+ DL +V G FR Sbjct: 242 LFLDEVGDLPFPLQVKLLRFLETGEFRRIGSPILHKVDVRIIAATNADLEKKVEEGTFRS 301 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLY+RL+V+ I +P L QR EDI L+ FL R + VK + +A L+ Y +PG Sbjct: 302 DLYFRLHVMDITIPPLTQRSEDILPLSAFFLNRLKRKY--PVKPLSVKAQAALLAYSFPG 359 Query: 357 NIRELENAVERAVVLLTGEYISEREL----------PLAIASTPIPLGQSQDIQPLVEVE 406 N+REL + +ERAVVL GE I +++L P T ++ L VE Sbjct: 360 NVRELAHMIERAVVLAKGEEIDDKDLFPHEQPVPSNPSDRKLTTSAETGEEEAFLLKNVE 419 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +E I L+ + NKT+ A +LGI+ + L K+ Sbjct: 420 REHIKHVLDVSQWNKTKTAEKLGISVRNLYRKIE 453 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 171/442 (38%), Positives = 268/442 (60%), Gaps = 8/442 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +++ +DD ++ +L G V S +++L+ + +V+ D+RM +DG+ Sbjct: 7 VVITEDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMPRIDGMKV 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L + NP V++MT +++VE+AV++LK GA DY+ KP + L+ T+E+AL+H + Sbjct: 67 LDFARQKNPLTQVILMTGHATVESAVQSLKAGAFDYICKPFENVELRHTVERALSHWNLS 126 Query: 128 DAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 ++ ++G+S AM + I A + +VLI G+SGTGKELVAR I Sbjct: 127 RENMRLREENKVFAEGDVIIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGKELVARQI 186 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R + V +NCAA+ E ++ESELFG++KGAFTGA++ + G F A+GGT+FLDE+ Sbjct: 187 HLKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERAKPGLFETANGGTIFLDEV 246 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 + S +Q +LLR +Q+ R+G + V+VR++AAT+RD+ + FR+DLYYRL Sbjct: 247 NNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQETFREDLYYRL 306 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 V+ I +P+LR RR+D+PLLA +F+ ++A+R K V G + Q + L+ +DWPGN+RELE Sbjct: 307 RVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMSTQVLGALMRHDWPGNVRELE 366 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD---IQPLVEVEKEVILAALEKTGG 419 N ++RA++L G+ I E LP I+ ++ D Q L EVE I L +T G Sbjct: 367 NVIQRALILCQGKVIDEGVLPPEISRGTELSVRAIDHMQPQTLEEVEVYFIRKTLRETNG 426 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 ++ A LGI + TL K+ R Sbjct: 427 DRALCAEILGIDKSTLWRKIKR 448 >UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX2_DESAD Length = 447 Score = 597 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 175/443 (39%), Positives = 271/443 (61%), Gaps = 10/443 (2%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 + +IL+V+D+ L ++ G+ V +SG +AL+++ +Q F+LVL D+ + M+ Sbjct: 3 SHANILIVEDEAIARDNLTHVMTEAGHMVVAVSSGTEALQKIGKQEFELVLTDLMLPGMN 62 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 GI L+ IK + P+ V+++T ++SV+TAV A++ GA Y+ KPL+ D L+A + AL Sbjct: 63 GIELLEHIKEIQPSTQVIVITGHASVDTAVIAMQKGAHSYIAKPLNLDELRAQVFNALER 122 Query: 124 THS-----IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + F +VG+S + L I +A + VLI G++GTGKEL+ Sbjct: 123 QALSVEVLRLRQVLEEGKQDFPLVGQSDQIIKLKKTIEQLAHMDCNVLIQGETGTGKELI 182 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 AR IH S RS++ + +NC L++ ELFGHE+ AFTGA + ++G A+GGT+F Sbjct: 183 ARGIHMLSPRSQERFMAINCGTFTAELMDKELFGHEREAFTGAQRGQKGILEVANGGTVF 242 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 DE+ ++ MQV+LLR +QER RVG Q I VD+R+++AT+ DL EV G FRQDL Sbjct: 243 FDEMSELPLNMQVKLLRVLQERNFLRVGGTQEIPVDIRVVSATNCDLKEEVKNGTFRQDL 302 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRLNVV + P LR REDIP+L GHFL++ + ++ + + +D+L++Y +PGN+ Sbjct: 303 FYRLNVVTLSAPPLRDHREDIPVLIGHFLEKHRTETQ-SIDTISQETLDILMNYSFPGNV 361 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTG 418 RELEN +RA+ L G S LP I + + +++ ++ L EVE++ I + T Sbjct: 362 RELENISQRALALARGTVFSPDLLPEEIRN----IDRNKPLRTLEEVERDHIEKVMLATN 417 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 GNKT+AA+ LGI R +L K+ R Sbjct: 418 GNKTQAAKILGIDRVSLWRKMKR 440 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 169/434 (38%), Positives = 263/434 (60%), Gaps = 19/434 (4%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L++DD+ L+ + G++ Q L + F L++ DV+M +MDG+ Sbjct: 3 SVLIIDDEPDMGFALKEGMSRLGFDAHYYRDPSQLLSNINFSDFSLIITDVKMPKMDGLQ 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+EI+ PV+++T Y +VE AV A+K GA+DY++KP + L++ + + + Sbjct: 63 LLEEIRKRGIFTPVIVITGYGNVEDAVRAMKLGAVDYIMKPFSMETLKSLVSRLIPE--- 119 Query: 127 IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 Q +V +S M+ +L + +A ++ TVL+ G+SG GKE++AR IH S Sbjct: 120 -----------QDEIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIHKHS 168 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 RS +P V +NCAA+ E+LLE+ELFGHEKGAFTGA +R+ G+F A+ GT+ LDEI +++ Sbjct: 169 PRSNQPFVAINCAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEISEMA 228 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 +Q +LLR IQE+E+ RVG + I +DVR+IA T++DLA EV G FR+DL+YR+NV Sbjct: 229 YRLQAKLLRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFP 288 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 I +P LR+R +DI LA FL+R + + K T L+ W GN+RELEN + Sbjct: 289 IRIPPLRERSDDIIPLAEFFLKRLSNKMSKNF-TITEDMKKFLLKKSWQGNVRELENFIY 347 Query: 367 RAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAAR 426 R+ VL + E + + P+ + L + E+E+I+ AL+KT GN+T+AA+ Sbjct: 348 RSAVLSQDGILRLHEDEINLFEEEKPVKAGK----LKDAERELIVDALKKTEGNRTKAAK 403 Query: 427 QLGITRKTLLAKLS 440 LGI+ +TL K++ Sbjct: 404 ILGISVRTLRNKIN 417 >UniRef50_A6KXD6 Two-component system response regulator n=40 Tax=Bacteroidetes RepID=A6KXD6_BACV8 Length = 460 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 189/458 (41%), Positives = 278/458 (60%), Gaps = 21/458 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M H IL+V+DD++ T+L+ L G++V A+S +A +Q+ Q +DLVL D+R+ Sbjct: 1 MPH---SILIVEDDLTFATMLKTWLGKKGFSVDTASSNARARKQLDAQPYDLVLSDLRLP 57 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + DGI L +K IP++IMT Y+ +++AV+A+K GA DY+ KP+ D L + +A Sbjct: 58 DQDGIFLLSWMKEQKYNIPLIIMTGYADIQSAVQAIKHGASDYISKPIQPDELLKKINEA 117 Query: 121 LAHTHS-----IDAETPAVTASQFGMV-------------GKSPAMQHLLSEIALVAPSE 162 L + I+ T A AS+ V G+S A + L + + LVAP+ Sbjct: 118 LQNKALPTPVGIEKNTVAPKASKNKAVPHSATVPPSNFLEGESEAARQLYNYVGLVAPTP 177 Query: 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGAD 222 +VLI+G SGTGKE VA IH S R++KP + ++C ++ + L SE FGH KG+FTGA Sbjct: 178 MSVLINGASGTGKEYVAHRIHQLSKRADKPFIAIDCGSIPKELAASEFFGHVKGSFTGAL 237 Query: 223 KRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATH 282 + G FVEA+GGTLFLDEIG++S +Q++LLRA+QER ++ VGSN+ I VDVRL++AT+ Sbjct: 238 NDKTGAFVEANGGTLFLDEIGNLSYEVQIQLLRALQERRIRPVGSNKEIEVDVRLVSATN 297 Query: 283 RDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFT 342 +L + G FR+DLY+R+N + +P+L++R+EDI L A FL + + + GF Sbjct: 298 ENLQQAIEKGNFREDLYHRINEFTLRMPALKERQEDILLFANFFLDQANRELDRQLIGFD 357 Query: 343 PQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPL 402 A L Y WPGN+R+L+N V+RA +L +I+ EL + G Sbjct: 358 TAASQALQTYSWPGNLRQLKNIVKRATLLAQSNFITLAELGYELQEPIRSAGPQTFSLHD 417 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 EK+ IL AL++TG NK++AA LGI RKTL KL Sbjct: 418 EAAEKKRILEALKQTGNNKSKAAILLGIDRKTLYNKLK 455 >UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulator n=6 Tax=Bacteria RepID=Q1CWG7_MYXXD Length = 477 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 191/447 (42%), Positives = 269/447 (60%), Gaps = 16/447 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRM-----AEM 62 +LV DD L+ LL+ G V + S AL + + DLVL D+ + Sbjct: 25 VLVADDQADVLEALRLLLKRDGLTVVTSQSPAGALATLEAEDVDLVLMDLNYARDTTSGQ 84 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE---- 118 +GI L I+A + ++PV++MTA+ SVE AVEA++ GA DY+ KP D L ATL Sbjct: 85 EGIDLLGRIRAQDASLPVVVMTAWGSVEGAVEAMRAGARDYVQKPWDNTRLLATLRTQLE 144 Query: 119 --KALAHTHSIDAETPAVT---ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGT 173 +AL + ++ E + +Q MV +S +MQ + I VAPS A VL+ G+ GT Sbjct: 145 LRRALKRSRRLEEENQHLRRGQGNQLAMVSESRSMQPVRRLIERVAPSGANVLVTGEHGT 204 Query: 174 GKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD 233 GKE+VAR IH S RSE+ V +N L+E + ESELFGH KGAFT A R G F AD Sbjct: 205 GKEVVARLIHGGSTRSERAFVAVNSGGLSEGVFESELFGHVKGAFTDAKSDRIGCFELAD 264 Query: 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR 293 GGTLFLDEIG++ Q +LLR +Q E+ VGS++ VDVR+++AT+ DL+ V GR Sbjct: 265 GGTLFLDEIGNMPLSQQAKLLRVLQTGELHPVGSSKTRRVDVRVVSATNVDLSRAVAEGR 324 Query: 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 FR+DL YRLN V +++P LR+RREDIPLLA HFL R + + +A++ L+ Y Sbjct: 325 FREDLLYRLNTVEVQLPPLRERREDIPLLAAHFLAEQGRRYGRPNVRLSSEALEALLAYA 384 Query: 354 WPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAA 413 WPGN+RELE+AVERA+++ +G+ +++ +L L A + L EVE+ +I A Sbjct: 385 WPGNVRELEHAVERAMLMASGDEVTQEDLLLKRAGR--EGMARLEEMTLEEVERYLIERA 442 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLS 440 L + GN +EAA+ LG++R L +L Sbjct: 443 LARHEGNVSEAAKGLGLSRSALYRRLQ 469 >UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZVL8_DESOH Length = 449 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 186/442 (42%), Positives = 277/442 (62%), Gaps = 7/442 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 I+VVDD+ L+ +L G+ V+ ++ R+AL+ + D+++ DVRM MDG+ Sbjct: 4 HIVVVDDEPITLKQLRRILEKEGHRVSAFSNPRRALDHIESNSCDVLISDVRMPAMDGME 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 + +KA P I V+++T Y+S++ AVEA++ GA YL KP D ++ + +AL + Sbjct: 64 LMTRVKARFPDIEVILITGYASLDGAVEAVREGAFHYLEKPFTPDRVRERVGQALHLLSA 123 Query: 127 IDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + P ++G+ ++ ++S I + P+E VLI GDSG+GKELVARA Sbjct: 124 RRSARPGAQGEDRNDAGPVIIGQGARIREVVSIIGQIGPTECNVLITGDSGSGKELVARA 183 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IHA+S RS P + NC AL+E+L+++ELFGHEKGAFTGA+ R G A GGTLFLDE Sbjct: 184 IHAASRRSAGPFLAFNCGALSETLIDNELFGHEKGAFTGAESRGIGLVEAASGGTLFLDE 243 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ MQV+LLR +QE E+ RVG ++ + VDVR+++AT D+ A V G FR+DLY+R Sbjct: 244 IGEMPTAMQVKLLRVLQEGELMRVGGSRPVPVDVRIVSATAADIKAAVGEGIFRKDLYFR 303 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 +NVV I++P L +RREDIPLLA H L R + K ++ + +AM LL Y +PGN+REL Sbjct: 304 INVVNIKLPGLAERREDIPLLAYHILSRLNRQGGKNIQAISEKAMALLSGYAFPGNVREL 363 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD--IQPLVEVEKEVILAALEKTGG 419 EN +ERAV + GE I E +LP + + + + D L E+E++ + L+ TGG Sbjct: 364 ENILERAVAICQGEIIRECDLPPDLVALELQAYRPPDETFMTLAELERDYMAHLLKITGG 423 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 ++ A LGI R +L K+ + Sbjct: 424 ARSRTAEILGIDRASLWRKMKK 445 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 173/462 (37%), Positives = 270/462 (58%), Gaps = 31/462 (6%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ++ ++DD+ S TI + L +NV +S +AL + DL++ D++M M G+ Sbjct: 5 NVWIIDDEESIRTICTSALEDL-FNVESFSSASEALLALNSTTPDLIITDIKMPGMSGLE 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L ++ P +P +I+TA+++++ A+ A K GA +YL KP D + ++ KA + Sbjct: 64 FLDKVSEKFPNLPTIIITAHANIDNALSAYKGGAFEYLTKPFDINEIRKLAIKATKSSKP 123 Query: 127 IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 E + SQ +VGK+ +MQ + I ++ ++ TVLI G+SGTGKEL+A+++H +S Sbjct: 124 QHDELTQESNSQ--IVGKAESMQEVFKAIGKISKTDITVLIRGESGTGKELIAQSVHENS 181 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 +RS +P + +N AA+ LLESELFGHEKG+FTGA +R GRF +A GGTLFLDEIGD+ Sbjct: 182 SRSNQPFIAINVAAIPHELLESELFGHEKGSFTGAQSQRIGRFEQALGGTLFLDEIGDMH 241 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 P +Q RLLR + E RVG + I DVR+IAAT++++ + G+FR+DLY+RLNV Sbjct: 242 PELQTRLLRVLSSHEFYRVGGQKPIKSDVRIIAATNQNIEGLIKVGKFREDLYHRLNVFR 301 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 IE+P LR+R+EDIP L +FL++ A+ + +K AM++L YDWPGNIR+LEN Sbjct: 302 IELPPLRKRKEDIPSLVKYFLKKSADEIKSDLKDIEDPAMEVLNEYDWPGNIRQLENTCR 361 Query: 367 RAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPL------------------------ 402 V+ I+ ++P + + + LG L Sbjct: 362 YITVMAPSTSITLDDIPDEVKNVDMSLGDPNHFNGLGSNGNWEESLSNHIRSVLQDMNDL 421 Query: 403 ----VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 ++EK ++ AL+ + G + +AA+ LGI R T+ K+ Sbjct: 422 TNLSKDLEKILLQEALKASKGRRIDAAKILGIGRNTITRKIK 463 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 182/450 (40%), Positives = 272/450 (60%), Gaps = 19/450 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+D +L L+ GY V + + +AL + +Q F VL D+++ G+ Sbjct: 4 ILLVEDKADLREMLTTALQRMGYAVLPSANVNEALVDLAKQRFSAVLTDLKLPGGSGMDV 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L +P +PV++MTA+ ++ AVEA++ GA D++ KP+D +L+ LE+A+ + Sbjct: 64 LSAALDSDPMVPVVVMTAFGTIADAVEAMRAGAFDFIQKPIDLTHLKLLLERAVERQRLM 123 Query: 128 D-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 E A ++G+ P MQ+ E+ +A S++TVL+ G+SGTGKEL ARAI Sbjct: 124 RDNVVLREEYARKMGFPRIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFARAI 183 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S RS +P V LNCAA+ E L+E+ELFGHEKGAFTGA+ R+ G+F A+ GT+FLDEI Sbjct: 184 HQLSIRSTQPFVALNCAAMPEGLIENELFGHEKGAFTGANTRKSGKFEMANRGTIFLDEI 243 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G++ +Q +LLR ++E V+R+GS + +DVR++AAT+R+L V AG FR+DLYYRL Sbjct: 244 GELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFRRDLYYRL 303 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 V I +P LR+R ED+ L+A HFL F + +K P A+ L + WPGN+REL+ Sbjct: 304 AVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSLAPDALAALRAHLWPGNVRELQ 363 Query: 363 NAVERAVVLLTGEYISERELPLAI---ASTPIPLGQ----------SQDIQPLVEVEKEV 409 N +ERA +L E ++ +L L+ ++ + LG+ Q +EK Sbjct: 364 NTIERAAILHDTE-VTAADLGLSANLRSAAAVSLGEHSIDMGGSLPEVSAQASRTIEKAK 422 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKL 439 I A L + NK+ AA +LGI+ KTLL K+ Sbjct: 423 IEATLRECKWNKSAAAERLGISYKTLLTKI 452 >UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G869_SORC5 Length = 475 Score = 596 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 201/441 (45%), Positives = 283/441 (64%), Gaps = 8/441 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDD+ + L +LR GY A G +AL ++ E D+VL D++M +DGI Sbjct: 6 RILIVDDEANARAALSEILREEGYTTETAADGFKALGKLEEFAPDVVLTDLKMPGLDGIR 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 +++ + P ++MTA+ ++ +AVEA+K GA +YL KPLDF L +E+A+ Sbjct: 66 MMEKAQLALPDATFVVMTAFGTISSAVEAVKKGAYNYLTKPLDFSVLAVVVERAVERARL 125 Query: 127 IDAETPAVTASQF-----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + + + ++ P+M +L + VAPS A+VLI G++GTGKEL+A Sbjct: 126 LQENSRLRERLRERNAFGHVIASHPSMAKVLRLVEQVAPSRASVLIVGETGTGKELIAEM 185 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R++ PLV LNCAAL+ESLLESELFGHE+GAFTGA RREGRF +A GGTLFLDE Sbjct: 186 IHRASPRAKAPLVRLNCAALSESLLESELFGHERGAFTGAVGRREGRFEQASGGTLFLDE 245 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 + +I QV+LLR +QER +RVG N+ + VDVR++AA++RDL + G FR+DLYYR Sbjct: 246 VSEIPLATQVKLLRFLQERTFERVGGNETLKVDVRILAASNRDLRQRIAEGVFREDLYYR 305 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV +E+P LR+RR DIP LA FL R+A+ N K ++GFT +A+ L Y +PGN+REL Sbjct: 306 LNVVTLEIPPLRERRSDIPELATFFLGRYAQENGKRIEGFTDEALSALTSYSFPGNVREL 365 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP---LVEVEKEVILAALEKTG 418 ENA+ERA VL G I R LP ++S P + P + ++E+ IL LE Sbjct: 366 ENAIERAAVLCDGARIELRHLPAQMSSEPAESVDAMPRVPGSTIYDLERYAILRTLEACK 425 Query: 419 GNKTEAARQLGITRKTLLAKL 439 G+ ++AA LGI+ + + KL Sbjct: 426 GSTSKAATILGISPRKIQYKL 446 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 192/485 (39%), Positives = 268/485 (55%), Gaps = 50/485 (10%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +L+VDD+ + L L+ GY LANSG+ AL+ V + D VL DV+M +MDG+ Sbjct: 3 ASVLIVDDEKNILLTLSQSLQLAGYQTHLANSGQVALDVVSARPVDAVLMDVKMPDMDGL 62 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L ++ L P +PV++M+ + +++TAV+A + GA D+L KP+ + L L L H Sbjct: 63 TALAKLTELKPELPVIMMSGHGTIDTAVKATQLGARDFLEKPIARERLLVALRNVLKHQA 122 Query: 126 SI-DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 ++ + + ++ MVG PAMQ + S I APSE VLI G++GTGKEL+ARA+H Sbjct: 123 AMAELQELRAQLGRYDMVGSGPAMQRIFSLIQRTAPSEGRVLITGENGTGKELIARALHQ 182 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 S R +P V LNCAA+ L+ESELFGHEKGAFTGA R G+F A GTLFLDEIGD Sbjct: 183 HSKRKGQPFVKLNCAAVPHELIESELFGHEKGAFTGAVSVRRGKFELAHEGTLFLDEIGD 242 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + MQ +LLR +QE E++RVG + VDVR++AAT+++L AE+ AGRFR+DLYYR+NV Sbjct: 243 MPQAMQAKLLRVLQEGELERVGGAETHKVDVRVVAATNKNLEAEIAAGRFREDLYYRINV 302 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 V I P LR+RRED+P L FL +N + +P A+ ++ YD+PGN+REL N Sbjct: 303 VQIHSPPLRERREDLPDLIKTFLDEACAKNGRRPLTLSPDALAVMSAYDYPGNVRELRNL 362 Query: 365 VERAVVLLTGEYISERE----LPLAIASTPI----------------------------- 391 VER +L G ++ + LP P Sbjct: 363 VERLAILCEGPIVTRTDALELLPRGRNVPPPAPVETPASPLPPPSPEAAVVLASSTPAPA 422 Query: 392 ----------------PLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTL 435 P + + + E+E+I L T N TEAAR L + R Sbjct: 423 IAAPVATEPPAPVGFRPRADRTFREQVEDAEREIIQHVLSHTHDNVTEAARLLDLERGHF 482 Query: 436 LAKLS 440 K+ Sbjct: 483 YKKMK 487 >UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LMY2_SYNFM Length = 458 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 186/443 (41%), Positives = 267/443 (60%), Gaps = 6/443 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ILVVDDD+ +++A L + V A SG++AL+ ++ DLV+ DVRM M Sbjct: 2 QTKRTILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLKAGAVDLVITDVRMPGM 61 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ EI+ + +PV+ +TAY ++ AV+A+K GA+DYL KP D +L +++ L Sbjct: 62 GGMDLFHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDLVLKVKEILR 121 Query: 123 HT--HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 H ET + +G GKS +M+ L + +APS+ VLI G+SG GKE VAR Sbjct: 122 KPVPHLPAQETISPKHEFWG--GKSASMRELQDLVERIAPSDVNVLILGESGVGKERVAR 179 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH R P V ++C + LLESELFGH +GAFT A + ++G A+ GTLFLD Sbjct: 180 LIHQKGPRRLFPFVVVDCGSTPTGLLESELFGHVRGAFTHAIRDKKGLIEAAERGTLFLD 239 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG+ISP MQVRLLR +++R+++R+G + I V+ R+IAAT+ DL +V AG FR+DLYY Sbjct: 240 EIGNISPEMQVRLLRFLEDRKIRRIGDLREIPVNCRVIAATNVDLPEDVEAGNFREDLYY 299 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL VV + +P LR+RREDIPLLA HFLQ F E + + L Y WPGN+RE Sbjct: 300 RLRVVTLRIPPLRERREDIPLLAQHFLQSFCESQNLPPVRLPQETIRWLSEYPWPGNVRE 359 Query: 361 LENAVERAVVLLTGEYISERELPLA-IASTPI-PLGQSQDIQPLVEVEKEVILAALEKTG 418 L+NA+E VL + +L L+ + P+ P D L E E+ I+ AL++ G Sbjct: 360 LKNALEAGAVLCRESVLRPSDLHLSGLPHAPLKPHVSVGDSLSLEESERNAIVRALQQAG 419 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 + +AA+ LGI+R+ + K+ + Sbjct: 420 WVQKDAAQLLGISRRAINYKIKK 442 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 190/450 (42%), Positives = 279/450 (62%), Gaps = 12/450 (2%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 I +L+VD+D + ++ L GY+ +A SG + + +V++ F++V+ D+ M ++D Sbjct: 14 PPIRVLIVDNDTALAQAMEESLARVGYHCTIATSGPEGVRRVQQDNFEIVITDLVMNDVD 73 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA--- 120 G+ L K P V+++T +++V AVEA++ GA ++L KP+ L+A EKA Sbjct: 74 GMEVLARAKEALPEAEVIMVTGHATVPKAVEAMQQGAFNFLEKPITPTRLRAVAEKAADA 133 Query: 121 --LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 L T+ + G++ S M+ ++ + +AP++A+VLI G+SGTGKELV Sbjct: 134 VRLRQTNQELNQRLDERFGFEGIIFSSEKMKQVIDRLKRIAPTDASVLITGESGTGKELV 193 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 A+AIH +S R K +V LNCAA+ E+L+ESELFGH KGA+T A R G F A+GGTLF Sbjct: 194 AQAIHQNSPRKSKRIVALNCAAVAENLVESELFGHVKGAYTDALNDRMGAFEYANGGTLF 253 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDE+GD+ Q++LLR ++E ++ RVG N+ I V+VR+++AT+R L + AG FR DL Sbjct: 254 LDEVGDMPLATQIKLLRVLEEHQITRVGDNKPIRVNVRMVSATNRALEDAIKAGTFRADL 313 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYRL VV +E+P+LRQRREDI LA HF ++F R+ K KG +P L YDWPGN+ Sbjct: 314 YYRLKVVTVELPALRQRREDIVPLADHFRRQFIRRHHKPNKGISPVVSRRLFSYDWPGNV 373 Query: 359 RELENAVERAVVLLTGEYISERELPL------AIASTPIPLGQSQDI-QPLVEVEKEVIL 411 R+L NA+E VVL T + +LP + + I G S+ I QPL +E+ I Sbjct: 374 RQLRNAIETMVVLDTDGILDIDDLPPELVDAEELRTPAIASGPSELIGQPLDNIERWAIE 433 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L+ T GN+ EAAR LGI +TL KL + Sbjct: 434 ETLKLTSGNREEAARILGIGARTLYRKLDK 463 >UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LUXO_VIBCH Length = 455 Score = 595 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 168/441 (38%), Positives = 257/441 (58%), Gaps = 11/441 (2%) Query: 11 VDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKE 70 V+D S + ++ L ++ + +GR A+E + + DL+L D+R+ +M G+ L Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYA 61 Query: 71 IKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDAE 130 +K +P +P++ MTA+ S++TAVEA++ GA D+LIKP + D L+ T+ A+ + + Sbjct: 62 VKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKND 121 Query: 131 TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSE 190 + G +G S MQ + I A S+A++ I G+SGTGKE+ A AIHA+S R + Sbjct: 122 VDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGD 181 Query: 191 KPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQ 250 KP + +NCAA+ + L+ESELFGH KGAFTGA R+G ADGGTLFLDE+ ++ +Q Sbjct: 182 KPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDLQ 241 Query: 251 VRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVP 310 +LLR IQ Q+VGS+++ SVDVR + AT+RD EV GRFR+DLYYRL V+ + +P Sbjct: 242 TKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLP 301 Query: 311 SLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVV 370 LR R +D+ +A L ++ K + + ++ Y+WPGN+R+L+N + VV Sbjct: 302 PLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVV 361 Query: 371 LLTGEYISERELPLAIASTPIPLGQS-----------QDIQPLVEVEKEVILAALEKTGG 419 L G I+ LP + P+ ++ +I PL EK+ I A+E G Sbjct: 362 LNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIEACDG 421 Query: 420 NKTEAARQLGITRKTLLAKLS 440 N AA L ++ T+ KL Sbjct: 422 NIPRAATYLDVSPSTIYRKLQ 442 >UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPF3_9BACT Length = 451 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 174/444 (39%), Positives = 259/444 (58%), Gaps = 10/444 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +IL++DD+ S CT +Q +L GY A + +++++ FD++ D+ + + DGI Sbjct: 2 ANILIIDDEKSICTTIQGILEDEGYTADYALTFCDGFKKLKDGSFDILFLDIWLPDRDGI 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 LKEIK P + V+I++ + ++E AVEA++ GA D+L KPL + + ++ Sbjct: 62 DGLKEIKKYFPELEVVIISGHGNIENAVEAIRVGAYDFLEKPLSLERILLIVKHLQDKFQ 121 Query: 126 SID--AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + E+ ++ ++G S + L +I +AP+ A V+I G++GTGKE VAR IH Sbjct: 122 LMRDLRESRGDQLKKYDLIGTSKPLLDLRKKIEKIAPTNAWVMITGENGTGKEHVARLIH 181 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S RS V +NCAA+ LLESE+FGHEKGAFTGA ++G+F E D GT+FLDEIG Sbjct: 182 MLSKRSRNSFVEINCAAIPSELLESEMFGHEKGAFTGAHMAKKGKFEEGDNGTVFLDEIG 241 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+ Q +LLR ++ RVG N +S D RLI AT+++L E++ G FR+DLYYR+N Sbjct: 242 DMEMSAQAKLLRVLENNTFSRVGGNASVSSDFRLITATNKELEDEISDGNFREDLYYRIN 301 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV + VP LR+R +DIPLL HF++ N +K + M L + ++WPGN+R+L+N Sbjct: 302 VVPLVVPPLRERHDDIPLLVNHFIKEACSFNGIELKKVDEELMHLFVQFEWPGNVRQLKN 361 Query: 364 AVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ---PL----VEVEKEVILAALEK 416 VER VVL +S + P I P +S D++ PL EK IL L+ Sbjct: 362 LVERMVVLSEDSVMSLDDAPDFIQGKHFP-QKSYDVEYEYPLKHAKENFEKHYILNILQN 420 Query: 417 TGGNKTEAARQLGITRKTLLAKLS 440 N + +AR L I R L K+ Sbjct: 421 NDWNISRSARILEIERTYLHRKIK 444 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 177/457 (38%), Positives = 266/457 (58%), Gaps = 18/457 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLR-GWGYNVALANSGRQALEQVREQVFDLVLCDVRM 59 MT + + L+VDD+ +L+ L G V +A+SG +AL + + DL+L D++M Sbjct: 1 MTKETL--LIVDDEEDLLQLLKRSLEPDLGCEVKVASSGGEALNVLEREPVDLLLVDMKM 58 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 EM+G+ L++++A P + V++MTA+ +E AV+A++ GA D++ KP D + L +L K Sbjct: 59 PEMNGLELLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNK 118 Query: 120 ALAHTHSIDAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 AL + + Q +VGKS MQ + I +VA ++ TVLI G+SGTG Sbjct: 119 ALERSRLLRENLNLQRHVQMHEAFQNLVGKSARMQRVYEAIQMVAKTDLTVLITGESGTG 178 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 K+L RAIHA S R P V +NC A+ E++LESELFG+ KGAFT A + R G F EA Sbjct: 179 KDLACRAIHALSQRRSNPFVAVNCPAIPENILESELFGYRKGAFTHATQNRTGLFQEAHK 238 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GT+FLDEIGDISP +Q +LLR +QE+ ++ +G + +SVDVR++A+T+RDL + G F Sbjct: 239 GTIFLDEIGDISPNIQAKLLRVLQEKVIKPLGDTKSVSVDVRVVASTNRDLGDRIRRGEF 298 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DL+YRLNV+ I +PSLR+R EDIPLL H +++ + K P+ ++ + W Sbjct: 299 REDLFYRLNVLPIVMPSLRERPEDIPLLVNHLIEKHCAALNRPRKSVAPELTEIFLRAPW 358 Query: 355 PGNIRELENAVERAVVLLTGEYISERE----------LPLAIASTPIPLGQSQDIQPLVE 404 PGN+RELEN + R ++ + I + +P A + + + L Sbjct: 359 PGNVRELENVIVRGLLFAPRDEILPEDVGFHRPVKGRIPGKDAPSTNVPYKDAKEEALRG 418 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E L T GN + AA+ G+ R+ L L R Sbjct: 419 FHAEYFGGVLTATRGNVSHAAKLCGLERQALQQLLRR 455 >UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulator Nla19 n=6 Tax=Myxococcales RepID=Q1DDD5_MYXXD Length = 482 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 200/465 (43%), Positives = 270/465 (58%), Gaps = 26/465 (5%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 +LVVDD + LLR Y V A +G +AL Q+ DL+L D++M Sbjct: 7 PPTRGRLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEP 66 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 MDG+ L+ + P + V++MTA+ S+E+AVEA++ GA DY+ KP L+ +E+AL Sbjct: 67 MDGLTLLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERAL 126 Query: 122 AHTHSIDAETP-----AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 +VG+S AM+ L + + VA S+ATVLI G+SGTGKE Sbjct: 127 ERARLQRDVDNLTTDFNQRHGLSALVGRSAAMRELTTRLMRVAQSDATVLIQGESGTGKE 186 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARA+HA S R + V +NCAA++ESLLESELFGH KGAFTGA K R G F EADGGT Sbjct: 187 LVARALHAHSRRKARSFVPVNCAAISESLLESELFGHAKGAFTGAVKSRRGLFEEADGGT 246 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LF+DE+ + SP Q +LLRA+QE EV+RVG + + VDVR++AAT+RD+ EV RFRQ Sbjct: 247 LFIDEVTETSPTFQSKLLRALQEGEVRRVGESTALRVDVRIVAATNRDIELEVRDKRFRQ 306 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNVVA+ VP LR+R ED+P LA HFL+R R+ K + A+ L+ Y +PG Sbjct: 307 DLYYRLNVVALRVPPLRERLEDVPALAEHFLERANARS-PNPKRLSAAAVSHLMSYGFPG 365 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ------------------- 397 N+RELEN VE+A L G+ + + P+ G Sbjct: 366 NVRELENLVEQAAALAEGDELLPEDFPVRQGRMTPAHGTPSVAFLDGQGGALGRNASAGP 425 Query: 398 -DIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 Q + E E+ I ALE+ G + A +LG++ TL K+ R Sbjct: 426 TLAQVVEEAERHAITQALERHGVDLARVADELGVSSTTLWRKMKR 470 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 192/452 (42%), Positives = 271/452 (59%), Gaps = 13/452 (2%) Query: 1 MTHD-NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRM 59 MT D I L+VDD S + A+ G+ + A S AL + Q D++L D+RM Sbjct: 1 MTDDYRIRFLIVDDQQSIRKLCIAIGNTLGFICSEAESAEAALAALETQSPDIILADLRM 60 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 E+ GI L +K L P V IMT Y S+ETAV+++K GA DY+ KP + L+ L++ Sbjct: 61 GELSGIDFLASVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFRVEELKIILQR 120 Query: 120 ALAHTHSI-----DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 + E G+VG S +Q +L + + + VLI G+SGTG Sbjct: 121 MAEKVRLVAENHFLRERVNTEMELHGIVGSSAKIQDVLRMVGRLKDTRTPVLICGESGTG 180 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KELVARA+H +++P V ++C +L +L+ESELFGHEKGAFTGA K +EG F A+G Sbjct: 181 KELVARAMHFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIKPKEGLFQAANG 240 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GT+FLDEIG++ +Q +LLR +Q+++V+ VGSNQ + VDVR+IAAT+RDL A G F Sbjct: 241 GTIFLDEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRDLEAGYKTGTF 300 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DLY+RLNVV + +PSLR+R+ DIP L HF+ R + + T QAM L+ YDW Sbjct: 301 RKDLYFRLNVVTVYLPSLRERKSDIPSLIQHFIDRPSA--GREGVEVTSQAMKSLMQYDW 358 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIAS-----TPIPLGQSQDIQPLVEVEKEV 409 PGN+RELEN +ERAV L GE I +LP ++ + + + D L ++E+ Sbjct: 359 PGNVRELENCIERAVALGNGEVIDVDDLPPSLQAMAPKKNAPAVSEGYDSTDLEDIERTT 418 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I ++ GG+K A + LGI+R TL K+ R Sbjct: 419 IQRVFDQVGGDKGLALKMLGISRATLYRKIKR 450 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 186/446 (41%), Positives = 270/446 (60%), Gaps = 13/446 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + +L+ +DD ++ L GY V G QAL + + FDLVL DVR+ +DG+ Sbjct: 1 MKLLLAEDDRIVRVTVRDALEEAGYQVTACADGAQALAAIEREPFDLVLTDVRLPGVDGL 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA---LA 122 + + P V++MTAY+ + AV ++ GA DY+ KP + D L +++ A Sbjct: 61 TLFRRTRRAQPDAGVVLMTAYADADDAVSVMREGARDYVQKPFEMDELLLRMQRVRDEHA 120 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + A P G++G S M+ + + A S+ VL+ G++GTGK+L AR I Sbjct: 121 FRKGMQAGAP-PGPEAGGVLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTI 179 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R+ +P V +NCAA+ E+L ESELFGHEKGAFTGAD++R GRF ADGGTLFLDE+ Sbjct: 180 HERSHRAGRPFVVVNCAAIPEALFESELFGHEKGAFTGADRKRIGRFEAADGGTLFLDEV 239 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G+++ Q +LLRA++ + VGSN+ + VDVR+IAAT+RDLA+ + G FR+DLYYRL Sbjct: 240 GELAASSQAKLLRALESSTFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFRKDLYYRL 299 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ + P LR+RR D+P+L FL R A R + V P + L +D+PGN+REL+ Sbjct: 300 NVIDLHAPPLRERRGDVPVLTAAFLARIAGRLGRPVPQLEPAVVAALAAHDYPGNVRELQ 359 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI--------QPLVEVEKEVILAAL 414 +A+ERAV L G I LP +A P+P G++ + + + E++ I AL Sbjct: 360 HALERAVALARGGPIRLEHLPPDLAG-PLPAGEAAPAGEGLARLGEAVEQFEQQYIRRAL 418 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLS 440 EKTGG++ AA LGI+RK+L +L Sbjct: 419 EKTGGHRARAAALLGISRKSLWERLR 444 >UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7U7_9BACT Length = 462 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 198/459 (43%), Positives = 285/459 (62%), Gaps = 25/459 (5%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 D+ IL+VDD+ + + LR +NVA A G +A+E ++ + FDLVL D+RM + D Sbjct: 3 DSARILIVDDEHNTREAMARYLRLR-FNVATAADGGEAIELLKHEDFDLVLTDLRMPKAD 61 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE----- 118 G++ L+ + +++TAY S+ AV A+K GA D++ KP+ D L+A ++ Sbjct: 62 GMSVLEATASKANRPACILLTAYGSIGDAVAAVKKGAFDFVAKPVKLDKLEAVIDAALAA 121 Query: 119 -------KALAHTHSIDAETPAVTASQFGMV--GKSPA--MQHLLSEIALVAPSEATVLI 167 KA ++ A PAV A G+V PA M ++S + VAP+ +TVL+ Sbjct: 122 RRKAAEDKAAQAEATVAATAPAVAAPPPGIVLPTDDPANPMTKVMSLVKTVAPTRSTVLL 181 Query: 168 HGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREG 227 G+SGTGKE+ AR IH S R+ V ++CAAL +LLESELFG+EKGAFTGA +R +G Sbjct: 182 TGESGTGKEVFARMIHDWSGRTGY-FVPVHCAALTATLLESELFGYEKGAFTGAAERHKG 240 Query: 228 RFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAA 287 RF AD GTLFLDEIG+I P QV+LLR ++ R +RVG + I VDVRL+AAT+RDL Sbjct: 241 RFEVADHGTLFLDEIGEIDPATQVKLLRVLETRSFERVGGTETIKVDVRLVAATNRDLRK 300 Query: 288 EVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMD 347 V+ G FR+DL+YRL+VV +E+P LR R+ DIP L F+ FA N + V G P A+ Sbjct: 301 MVSEGTFREDLFYRLSVVNLELPPLRDRKSDIPGLIHSFIAEFARENERDVTGIAPDALA 360 Query: 348 LLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIAS--TPIPLGQS-----QDIQ 400 L+ Y WPGNIREL N +E VVL + + + ++P A+ + P+P G + +I+ Sbjct: 361 ELVAYPWPGNIRELRNCIECMVVLAREKILRKSDIPEAVRNHENPVPPGSAATAPEPEIE 420 Query: 401 PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 E+++I AL + GN+T+AA+ LGI+R+TL +L Sbjct: 421 TFENSERKLIEKALAECNGNRTQAAKLLGISRRTLHRRL 459 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 186/451 (41%), Positives = 263/451 (58%), Gaps = 14/451 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT + IL+V+D++S +Q L GY VA A++ A + + FDLV+ D+R+ Sbjct: 1 MTPHS--ILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLP 58 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M G+ L I+ ++P V+++TA+ VE AV+A+K GA D+L KP D L +E+ Sbjct: 59 GMSGMELLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERF 118 Query: 121 LAHTHSIDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + G +G+SPAM + I +A + VL+ G SG+GKELVA Sbjct: 119 FRFLDLKRENDRLRGEREEGEFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVA 178 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 A+H S R ++P + +NCAAL E LLESELFGHEKGAFTGA + R G+F ADGGTLF Sbjct: 179 GALHRRSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFF 238 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DE+G++ +Q +LLR ++++EV VG N V+VR + AT R+L + GRFR+DLY Sbjct: 239 DEVGEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLY 298 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YR+NVV + +P LR+R D+ LL FL+RF + + + QA L+ YD+PGN+R Sbjct: 299 YRINVVPVTLPPLRERGSDVALLTERFLRRFCALHERQA-TLSEQARLALLAYDYPGNVR 357 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP----------LVEVEKEV 409 EL NAVE AV+L T I LP I + + + D + E+ Sbjct: 358 ELRNAVEHAVLLCTEGEIHVGHLPERIRAATQSMPPACDDDAGDTPASLAEGVARFERRR 417 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 I+ ALE+TGG K +AA LGI+RK L KL Sbjct: 418 IMEALERTGGRKIQAADLLGISRKQLWLKLK 448 >UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5H7_9DELT Length = 449 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 189/447 (42%), Positives = 268/447 (59%), Gaps = 10/447 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ILVVDD+ L +L G+ + A GR+AL + E+ FDLVL D+RM M Sbjct: 1 MSRARILVVDDEAIARENLVHVLTRAGHRASAAADGREALAALAEEPFDLVLTDLRMPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ L +K P + V+++T +++V+TAV A+ GA Y+ KP+ + + A KAL Sbjct: 61 DGLELLAGLKRRFPEVEVIVVTGHAAVDTAVAAMGLGAFTYVAKPVHVEEVLAQTAKALE 120 Query: 123 HTHSIDAETPAVTASQF------GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 +++ E ++ ++G+S M+ L I VA E VL+ G++GTGKE Sbjct: 121 -KNAMRRELASLRRRADPASGLSRLIGQSATMEALRESIVQVARLECNVLVTGETGTGKE 179 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVAR IH SAR+ + +NC A +E L+ +ELFGHE+ AFTGA RR+G A GGT Sbjct: 180 LVARTIHDLSARARGRFMAVNCGAFSEELISNELFGHEREAFTGAGARRKGLIEAAAGGT 239 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIG++ MQV+LLR +QER RVG + +D R+++AT++DL E AG FRQ Sbjct: 240 LFLDEIGELPLSMQVKLLRVLQERTFLRVGGTEEAPMDARVLSATNKDLKKEAEAGAFRQ 299 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRL+V+ + VP L +RREDIPLLA HFL R A + V +P+ +D L+ Y++PG Sbjct: 300 DLFYRLDVITLHVPPLSERREDIPLLARHFLARHASEAGRNV-RLSPEVLDSLLLYEYPG 358 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPL--GQSQDIQPLVEVEKEVILAAL 414 N+RELEN V++A+ + G+ I R L + + G + L E EK I L Sbjct: 359 NVRELENIVQKALAVCDGDVIESRHLLADLRDQRVRPTRGTRKSWPTLEEHEKAYIRDVL 418 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 E+ GNK++AAR LGI R +L KL R Sbjct: 419 EEVEGNKSKAARVLGIDRVSLWRKLKR 445 >UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR5_9BACT Length = 442 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 181/443 (40%), Positives = 273/443 (61%), Gaps = 12/443 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + IL+++D++S T++ L + A +G + L+ + E+ +D+++ D+RM M G Sbjct: 1 MSILLIEDNLSLSTLVSMYLTSENIDNDTAPNGYEGLKLLSEKEYDVLITDIRMPGMSGN 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 +++ L P +PV+I+TA+ ++ AV A++ GA DYL KP + + L +++KA+ + Sbjct: 61 EVMEKAAKLYPDMPVIIITAHGNIPDAVAAIRKGAYDYLTKPFENEELLNSIKKAVEISR 120 Query: 126 SIDAETPAVTASQFGM----VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 T + + VGKS A +L+ VAP++A VL+ G+SGTGKEL+AR Sbjct: 121 MRRENTRMKQYMKQSIAPKMVGKSEAFIQMLNLADTVAPTDAPVLVLGESGTGKELIARQ 180 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H+ S R++KP +T+NCAA+ E L ESELFGH+KG+FT AD+ +G+ +EA+GGTLFLDE Sbjct: 181 VHSKSNRADKPFITVNCAAVPEGLFESELFGHKKGSFTSADRDYKGKILEAEGGTLFLDE 240 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ +QV+LLR +QE E+Q VGS + VDVR++AAT+R L G FR DL+YR Sbjct: 241 IGELPQSIQVKLLRFLQESEIQPVGSATPMKVDVRVVAATNRSLKQMTEKGEFRDDLFYR 300 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV +EVP L +RREDI L F ++ R F+ +AM+ LI+Y W GNIREL Sbjct: 301 LNVFPVEVPPLSKRREDIKDLVELFSAKYGAR-----ITFSEKAMEKLINYSWTGNIREL 355 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTP---IPLGQSQDIQPLVEVEKEVILAALEKTG 418 EN + R +L I+E +LP S + + L E+EK +I+ AL K Sbjct: 356 ENTIYRLCILQGKGEITEDKLPAEFCSNMETCLDMHMPDKELNLEELEKNIIIKALHKFD 415 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 GNK+ AA+ L I R LL +L + Sbjct: 416 GNKSRAAKYLCIPRHVLLYRLEK 438 >UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIN5_9BACT Length = 431 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 190/435 (43%), Positives = 281/435 (64%), Gaps = 10/435 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + IL+VDD+ +H +L+ L G+ A A +G +ALE + E FD++L D++M MDG+ Sbjct: 1 MKILIVDDEKNHRMMLKLHLEDAGHKTAQAENGLKALEALDEGRFDVILLDMKMDVMDGL 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L + ++PV+++TA+S+V+TAVE++K GA+DYL KP+D L LEK + Sbjct: 61 TFLGMMNRKGHSVPVIVITAFSTVKTAVESMKLGAVDYLTKPVDIPQLMDALEKINEQSG 120 Query: 126 SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 + V +FG V + ++ ++ LVAP++ATVLI G+SGTGKE+VAR+IH + Sbjct: 121 DV---LTPVENYRFGGVYTQEGLGSIIEQLKLVAPTDATVLILGESGTGKEIVARSIHDN 177 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S R+++P + +NCAAL+E+++ESELFGH KGAFT A K +G F ADGGTLFLDEIG++ Sbjct: 178 SKRAQRPYLAINCAALSENIIESELFGHVKGAFTTAVKDNKGLFEAADGGTLFLDEIGEL 237 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 S +Q +LLR +QE +RVG + + +VR++AAT+R+L G FR+DLY+RL V Sbjct: 238 SLNVQAKLLRVLQEGAFERVGDTRTLKTNVRIVAATNRNLKKLSEKGDFREDLYFRLAVF 297 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 +EVP LR+R+E+I L F+ + AE+ K +K P + L Y +PGNIRELEN V Sbjct: 298 PVEVPPLRERKEEIAPLVKFFIDKHAEKLGKLIKSADPAYIRKLSDYGFPGNIRELENIV 357 Query: 366 ERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAA 425 ER+++L TG + LP + + E+++I+ AL+KTGGNKT+AA Sbjct: 358 ERSIILTTGTKLEPVTLPAF-------GTERDGGLSIRGNERDLIIKALKKTGGNKTKAA 410 Query: 426 RQLGITRKTLLAKLS 440 L I+R+TL KL Sbjct: 411 EILQISRRTLHNKLK 425 >UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSF9_ALKMQ Length = 462 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 174/458 (37%), Positives = 270/458 (58%), Gaps = 22/458 (4%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 I+++DD+ + L+ L GY A + L+++ V D+R+ + +G Sbjct: 2 RKKIVIIDDEETIRLSLKEALMDLGYEAETAGDSWEGLKRIALFKPQAVFLDMRLPDGNG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA---L 121 + ++ IK ++ + V++MTAY ++TAV A+K GA DY+ KP + D +Q L + L Sbjct: 62 LQLIQRIKEMDKDLEVVLMTAYGDIKTAVTAIKNGAFDYINKPFELDEVQIILTRIFDKL 121 Query: 122 AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPS-EATVLIHGDSGTGKELVAR 180 I ++ ++G +M+ + S++A+++ + + TVLI G++GTGKE+VA Sbjct: 122 KLQKKIYLLEKEKLSNDETIIGSHSSMKDVFSKVAILSENEDVTVLIRGETGTGKEVVAS 181 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +S R E ++ +NC A+ L+ESELFG+EK AFTGA R++G ADGGT+FLD Sbjct: 182 AIHHNSPRKEASMLKINCGAIPTQLMESELFGYEKSAFTGATARKKGLLEIADGGTVFLD 241 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++S MQ +LLR ++ER+ +RVG + I V++R+IAAT++DL + FR+DLYY Sbjct: 242 EIGELSMDMQTKLLRFLEERKFKRVGGLEDIEVNIRVIAATNKDLEEAIEKKEFREDLYY 301 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV +++P LRQR EDI LLA H+L ++ ++ K + FT +A + L+ Y W GNIRE Sbjct: 302 RLNVVPMDLPPLRQRGEDILLLAQHYLAQYNQKFNKKIMDFTEEAKEKLLKYHWKGNIRE 361 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP-----------------LV 403 L+N +ER ++L YI LP+ I + + +IQP L Sbjct: 362 LKNVLERTIILNDDSYIRLEHLPIEIVGSE-EKTVATNIQPMIKIGEDIPKDFSLENYLQ 420 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E+EK I AL GN ++AA LGI+R L K + Sbjct: 421 EIEKSYIQTALRLCKGNHSKAAYILGISRFALKRKQEK 458 >UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKV1_ALKOO Length = 440 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 177/441 (40%), Positives = 257/441 (58%), Gaps = 14/441 (3%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +L+VDD+ +L+ L GY+V ++N +AL + E FD+ L D+ M MDG Sbjct: 3 RCRVLLVDDEEKFIELLKQRLTRKGYSVEISNCSLKALNMIEETEFDVALFDIMMNGMDG 62 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 +A L++ K + P + ++++T Y++V+TA+EA+K GA DYL KP+ L+ L+KAL Sbjct: 63 LALLEKAKKIQPNLEIIMLTGYATVDTAIEAMKKGAYDYLTKPIKPIELELILQKALDRK 122 Query: 125 HSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 D ET T + ++G S A+ L I V+ S VLI G+SGTGKELVA Sbjct: 123 KLQDYSNNLIETIQRTNKKREIIGNSDAIISLKYMIDRVSDSSLPVLILGESGTGKELVA 182 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 A+H S R+ P V +N +A+ LLESELFGH KGAFTGA ++G AD GTLFL Sbjct: 183 NALHYHSLRAHHPFVPINASAIPSQLLESELFGHVKGAFTGAQVNKKGLVELADEGTLFL 242 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ +QV+LLR + E + VG +VR++AAT+ +L + GRFR+DLY Sbjct: 243 DEIGDMEASLQVKLLRFLDTGEFRPVGGTVTKKTNVRVVAATNINLEQAIEEGRFREDLY 302 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL+VV + VP LR+R D +LA +FL++ + K + +A L++Y +PGN+R Sbjct: 303 YRLSVVTLNVPPLRERGRDALVLAEYFLRQSNSK-----KKLSKEAEMFLLNYTFPGNVR 357 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGG 419 EL N +ER ++L + + + + L ++EKE I LEKTG Sbjct: 358 ELANLIERGILLSKDNDLYPNDF----FARETYSKNNMKSLALQDIEKEHICQVLEKTGW 413 Query: 420 NKTEAARQLGITRKTLLAKLS 440 NKTEAA+ L I +TL K+ Sbjct: 414 NKTEAAKILKIGLRTLYRKIE 434 >UniRef50_A3EPR9 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=A3EPR9_9BACT Length = 489 Score = 592 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 186/460 (40%), Positives = 276/460 (60%), Gaps = 22/460 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ-VFDLVLCDVRM 59 M+ D ++LVVDD+ L+ L G++V A +G++AL + +++ + V+ D+RM Sbjct: 1 MSPDESNVLVVDDEREMGLALRESLSRDGFHVDWAKNGQEALTRFKQEGPYQWVISDLRM 60 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 E DG + L+ ++ ++PA V++MTA+ +V AV+A++ GA+D+++KP + L+ L Sbjct: 61 PEGDGWSLLESLRQISPATRVILMTAFGTVPQAVDAMRMGAVDFVMKPFSPEELRKKLT- 119 Query: 120 ALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 A A + DA P A ++ + P + +L + VA + AT+LI G+SGTGKEL+A Sbjct: 120 ASAGRRTPDAGRPVWEAVSRPILTRDPGLIGVLKMLDGVARTPATILIEGESGTGKELLA 179 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 R +H S R +P V +NCAAL ESLLESELFG+EKGAF+GA R+ G+F A GTL L Sbjct: 180 RYVHERSPRVHRPFVAVNCAALPESLLESELFGYEKGAFSGALARKIGKFELAHTGTLLL 239 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++ +Q +LLR IQEREV RVG + VD+R++A T+R++ V G+FR+DLY Sbjct: 240 DEIGEMDLALQAKLLRVIQEREVDRVGGASPVPVDIRIVATTNRNMKEMVKTGQFREDLY 299 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL V + VP+LRQR DI LLA HF ++F V T +A++ L +PGN+R Sbjct: 300 YRLRVFPVRVPALRQRPADIVLLANHFREKF-RLEHMEVGELTAEAVECLRSASFPGNVR 358 Query: 360 ELENAVERAVVLLTGEYISERE-----------LPLAIASTPIPLGQSQDIQP------- 401 ELEN + +A L G +I L A ++ P P Sbjct: 359 ELENVIIQAAFLAGGGHIGPEHLLSLGGEETNGLSSAFSTPPKEQKTGDGFSPNGVRPGQ 418 Query: 402 -LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + EVE+E+I LE G N+T+AA+ LGI+ +TL KL+ Sbjct: 419 SVWEVERELIRVTLEACGQNRTQAAKMLGISVRTLRNKLN 458 >UniRef50_C6X591 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteroidetes RepID=C6X591_FLAB3 Length = 507 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 170/440 (38%), Positives = 258/440 (58%), Gaps = 6/440 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL++DD+ ++L ++ G+ V A+ + L+++ + D+VLCDV++ + G+ Sbjct: 61 KILIIDDEEKLRSLLTRIIALEGFEVIQASDCQSGLKKLSQSDIDVVLCDVKLPDGSGVE 120 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA-----L 121 K IK P+ ++++TAY ++ V+A+K GA DY+ K D + L KA L Sbjct: 121 LAKAIKEKYPSTEIILLTAYGNIPDGVQAIKNGAFDYITKGDDNSRIIPLLYKACEKAAL 180 Query: 122 AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 A S ++GKS ++ + VA ++ T+L+ G++GTGKE+ A+A Sbjct: 181 ARRVQHLERQLEKKHSLTNIIGKSRTIRQAVELAKKVAGTDTTILLTGETGTGKEVFAQA 240 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R + V +NC+A + LLESE+FGH+ GAFTGA K R+G F EA GT+FLDE Sbjct: 241 IHQESTRRTEHFVAINCSAFSRDLLESEMFGHKAGAFTGAAKDRKGLFEEAHNGTIFLDE 300 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 +G+++ +Q +LLR I+ E +VG + V+VR+IAAT+RDLA ++ G FR+DL+YR Sbjct: 301 LGEMALDLQAKLLRVIESGEFIKVGETKPTKVNVRIIAATNRDLAHQIALGHFREDLFYR 360 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 ++V I +P+LR R EDI +LA HF+ F + K + P + L H+ W GNIREL Sbjct: 361 ISVFQIPLPALRDRTEDIAVLAQHFVDFFGHKMNKKILSVDPGFITALQHHAWKGNIREL 420 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTP-IPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 +N +ERAV+L +G ++ +LP+ I P + G+ L VEK I L T GN Sbjct: 421 KNVIERAVILSSGTELAPDDLPIDIQFHPSVKSGKQLSAFSLQSVEKLHIQKVLNHTQGN 480 Query: 421 KTEAARQLGITRKTLLAKLS 440 K EAAR L I TL K+ Sbjct: 481 KAEAARLLEIGIATLYRKIE 500 >UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5EJI5_ACIF5 Length = 455 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 192/440 (43%), Positives = 265/440 (60%), Gaps = 8/440 (1%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 + IL+V+D+ + ++L A L G++ A S AL + ++ LVL D R+ M G Sbjct: 3 SQKILIVEDEKNLRSVLAATLEAEGFSTAQTESAEDALAIMARELPVLVLTDQRLPGMSG 62 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 L IK P PVLI TAY +E AV+A+K GA YL KP+D L A + +AL+ Sbjct: 63 TELLARIKERWPRTPVLIATAYGEIEQAVQAIKAGAEHYLTKPVDEGELVAIIRQALSCR 122 Query: 125 HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 + + + G++G+SP +L I LVAP+ + VLI G+SGTGKE+VAR +H Sbjct: 123 GHTNP-PRSQDLPRHGIIGESPGTLEILEMINLVAPAPSNVLITGESGTGKEMVARGLHV 181 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 +S R+ P + NC A+ L+ESE+FGHEKGAFTGA + + G+ A GTLFLDE+GD Sbjct: 182 ASPRAHAPFLAFNCGAIPLDLVESEIFGHEKGAFTGAVRSQAGKLEMAGSGTLFLDEVGD 241 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + MQV+LLR +QERE R+G NQ + + R+IAATH DLA V AG FR+DLYYRLNV Sbjct: 242 MPLAMQVKLLRTLQEREYTRLGGNQPLRLAARIIAATHVDLAKAVEAGSFREDLYYRLNV 301 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 + + +P LR+RRED+ L HFL+R + A+ + Y WPGNIR+LEN Sbjct: 302 IPLHIPPLRERREDVAPLVHHFLRRVCTELGRPEVDIATAALAAMEAYSWPGNIRQLENI 361 Query: 365 VERAVVLLTGEYISERELPLAIASTPI----PLGQSQDIQPLVEVEKEVILAALEKTGGN 420 VER VVL G I +LP + +T P G + D L VE+E +++AL K N Sbjct: 362 VERLVVLNRGGTILAADLPNEMRTTETERIRPFGGAYD---LHAVEREAVVSALNKAQSN 418 Query: 421 KTEAARQLGITRKTLLAKLS 440 K++AA LGI+RK L ++ Sbjct: 419 KSQAALLLGISRKQLHTRMK 438 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 183/443 (41%), Positives = 268/443 (60%), Gaps = 12/443 (2%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + +LVVDD+ L L G+ V A S + E++ FDLV+ D+ + Sbjct: 9 SAPQQSVLVVDDEQGMRNFLSRALALRGFVVDTAESAEEGAEKLAATRFDLVILDIALPG 68 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 GI L+++ A A V+++TA++ ++TA++AL+ GA D+++KP D + ++ ++ Sbjct: 69 KAGIEWLQDLTAAGFAGEVILITAFADMQTAIDALRAGAADFILKPFRIDQILNSIHRST 128 Query: 122 AHTHS------IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + + ++ GM+G SPA+ L + +AP+ +TVLI G+SG GK Sbjct: 129 ERARLARENFLLRRQVAGSGSASDGMIGASPAIGQLRQILHRIAPTPSTVLIQGESGVGK 188 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E+VARA+H S R+E+P V +NCAA++ L+ESELFGH KGAFTGA + R G F A GG Sbjct: 189 EVVARALHQLSPRAEQPFVAVNCAAISAELIESELFGHVKGAFTGAREARNGLFHYAHGG 248 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++ +Q RLLR ++ER+V+ VG+ Q + VDVR++AAT+RDL AEV A RFR Sbjct: 249 TLFLDEIGELPLALQSRLLRVLEERKVRPVGTEQEVPVDVRVLAATNRDLRAEVAACRFR 308 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRL V+ + VP LR+R ED+P LA F+Q+ A + +P+ L+ + WP Sbjct: 309 EDLFYRLEVITLTVPPLRERAEDVPALAAAFMQQLAMQLGLPPLLISPEVSARLMAHPWP 368 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALE 415 GN+REL N VER+++ L + P S L EVEK ILA L+ Sbjct: 369 GNVRELRNFVERSLLFGDFP------LASLAGAVAPPPPASAAPLLLEEVEKRHILAVLD 422 Query: 416 KTGGNKTEAARQLGITRKTLLAK 438 + GGNKT AA LG++RKTL K Sbjct: 423 QCGGNKTRAAELLGVSRKTLERK 445 >UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG59_DESAH Length = 465 Score = 592 bits (1527), Expect = e-168, Method: Composition-based stats. Identities = 176/461 (38%), Positives = 263/461 (57%), Gaps = 25/461 (5%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +I +VDD+ L+ L GY V L + DL+L D+R+ +M+G+ Sbjct: 2 AEIAIVDDEKVLVNSLRIGLTKKGYRVYPFYDANGFLSYLGANEPDLILLDLRLPDMNGL 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L++I+ +N IP +++TA+ V++AV+A+KTGA DYL KP D + L+ ++K L Sbjct: 62 EVLRQIRLMNRQIPTVMITAHGDVQSAVQAMKTGAFDYLNKPFDMEELELIIKKVLGEAQ 121 Query: 126 SIDAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEAT-VLIHGDSGTGKELVA 179 + S ++G SP M L + ++ + T VLI G+SGTGK+L+A Sbjct: 122 LVKEVEHHRQRSYKAVILENIIGDSPPMLELYKTVKKLSHVKTTTVLIRGESGTGKDLLA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 +AIH + RS +P + +NCA+L E LLESELFGHEKGAFT A R+ G A+ GTLFL Sbjct: 182 KAIHNLNPRSGRPFIEINCASLPEHLLESELFGHEKGAFTDAKNRKTGLVEIANNGTLFL 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++S ++Q +LL+ I+ + +RVG +SV+V +I AT+R+L + FRQDL+ Sbjct: 242 DEIGELSILLQAKLLKFIETKTFRRVGGTSEVSVNVFIITATNRNLEQAIREQTFRQDLF 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVV + P LR R+EDI + ++L + + K + A + ++YDWPGN+R Sbjct: 302 YRLNVVPLFSPPLRDRKEDILKITDYYLDHYCRKFGKDLLSMALDAQHIFLNYDWPGNVR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP------------------ 401 EL+N +ER V+L G I+ R LP + + P Sbjct: 362 ELKNLIERLVILSDGATITGRHLPDGMIQPIAASERENRFDPMHVFKQDFSRGEQIPMDE 421 Query: 402 -LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L VEK++I+ ALEK KT AA+ LGI+R +LL ++SR Sbjct: 422 ILTAVEKKMIVNALEKADNVKTRAAKALGISRYSLLRRISR 462 >UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria RepID=LUXO_VIBVY Length = 453 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 172/442 (38%), Positives = 264/442 (59%), Gaps = 13/442 (2%) Query: 11 VDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKE 70 V+D S + ++ L G ++ + +GR A++ ++ ++ DL+L D+R+ +M G+ L Sbjct: 2 VEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHA 61 Query: 71 IKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDAE 130 +KA +P +P++ MTA+ S++TAVEA++ G+ D+LIKP + D L+ T+ A+ + + Sbjct: 62 VKASHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKND 121 Query: 131 TPAVTASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARS 189 + + + G +G S MQ + I A S+A++ I G+SGTGKE+ A AIHA+S R Sbjct: 122 ADSAGSQNYQGFIGSSQKMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASRRG 181 Query: 190 EKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMM 249 +KP + +NCAA+ + L+ESELFGH KGAFTGA R+G ADGGTLFLDE+ ++ + Sbjct: 182 DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLDL 241 Query: 250 QVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEV 309 Q +LLR IQ Q+VGS+++ SVDVR + AT+RD EV GRFR+DLYYRL V+ + + Sbjct: 242 QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL 301 Query: 310 PSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAV 369 P LR+R ED+ +A L + K F+ +D Y+WPGN+R+L+N + V Sbjct: 302 PPLRERGEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVV 361 Query: 370 VLLTGEYISERELPLAIASTPIPLGQS-----------QDIQPLVEVEKEVILAALEKTG 418 VL G+ I+ LP + + P +S +DI PL EK I A++ Sbjct: 362 VLNNGKEITMEMLPPPL-NQPFERKESVQPDLSELISVRDICPLWLTEKLAIEQAIKACD 420 Query: 419 GNKTEAARQLGITRKTLLAKLS 440 GN AA L ++ T+ KL Sbjct: 421 GNIPRAAGYLDVSPSTIYRKLQ 442 >UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q500_9BACT Length = 457 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 166/446 (37%), Positives = 270/446 (60%), Gaps = 9/446 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + IL++DDD S +LQ L+ GY+V++A G +A + + +LVL D+R++ Sbjct: 1 MSKE--KILIIDDDASILEVLQMRLKALGYSVSIAKDGDEAKTVLFQNKINLVLVDLRLS 58 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 E +GI +++I P +P++I+TA+ S+E+AVEA++ GA Y+ KP D+L ++ A Sbjct: 59 EENGIELMRDIIKNYPKLPIIIITAHGSIESAVEAMRRGAYSYIAKPFRNDDLAMQIKNA 118 Query: 121 LAHTHSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + ++GK+ M +L ++ V+ ++ V+I+G+SGTGK Sbjct: 119 LEKQRLTQEIEYLRNQLDERNNFNPIIGKNKQMLEILELVSRVSKTDCNVIIYGESGTGK 178 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+ARAIH +S R+ P + NC A+ E LLE+ELFGH +GA+T A + +EG F +AD G Sbjct: 179 ELIARAIHQNSNRANGPFIATNCGAIPEGLLENELFGHIRGAYTDAHESKEGLFAQADKG 238 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 ++FLDEI + S + Q++LLR +QERE++ VGS + ++VR+IAA++ DL V+ G FR Sbjct: 239 SIFLDEISNTSMIFQIKLLRVLQEREIKPVGSTKNRKINVRIIAASNTDLQKAVSEGTFR 298 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 DL+YR++V+ + +P LRQR++DIPLLA +F+ F + +K GF+P A+ ++ YDWP Sbjct: 299 DDLFYRIHVMPVYLPPLRQRKDDIPLLATYFITEFCKALKKDPLGFSPAALQRMLLYDWP 358 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALE 415 GNIREL N +E A ++ I ++ +T +D + E+E I L+ Sbjct: 359 GNIRELRNKIEHAAIVANKNNIEPEDIFPERNTTTNVFHSYKDAK--ERFEREYIENLLK 416 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 GN T A++ R + + + Sbjct: 417 ANNGNITNASKMASRYRADIYKLIKK 442 >UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 Tax=Planctomycetaceae RepID=Q7UVW6_RHOBA Length = 485 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 182/449 (40%), Positives = 272/449 (60%), Gaps = 12/449 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA-E 61 + +L+VDD+ + + L L ++ A S +AL++ F LV+ DV+M + Sbjct: 35 DSELHLLIVDDEPNIRSGLARGLEKICDHIETAGSVNEALDKFDAGHFQLVIADVQMPGD 94 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 DG+ + I+ +P +++TA +VETAV+A+K GA D+++KP+D + ++ + KA Sbjct: 95 RDGLELISLIRQRDPGTTCIVITANGTVETAVDAMKRGAFDFIMKPVDLNLIRQQVAKAA 154 Query: 122 AHTHSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 H + E A G +G Q+L+ +I VA ++ATVL+ G+SGTGKE Sbjct: 155 EHHQLRNENHHLREQLAEAGELTGFIGNCQTFQNLVDKIRQVAATDATVLVQGESGTGKE 214 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+ARA+H S R+ P V +N AL ESLLESELFGHEKG+FTGA +++ G F +A GGT Sbjct: 215 LIARAVHDLSNRNNAPFVAVNLGALPESLLESELFGHEKGSFTGASRQKPGCFEQASGGT 274 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEI +I QV LLR ++ + RVG +++ + R+++AT++ + V G FR+ Sbjct: 275 LFLDEITEIPAKSQVDLLRVLETGQYARVGGEELLQSNARIVSATNQVASKLVEDGAFRE 334 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLN++ IEVP LR RREDIPLL HFL+RF R+R+ +K P+AM +L WPG Sbjct: 335 DLYYRLNIIPIEVPPLRNRREDIPLLVEHFLKRFCARHRRPLKRIVPEAMQMLSQSHWPG 394 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEV----EKEVILA 412 N+R+L N +ER VV + E I +LP + QS ++ LVE+ EK I Sbjct: 395 NVRQLRNHIERLVVTVPAETILAADLPCELHQQN--AAQSTALKTLVEITESAEKTGIEL 452 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL ++ + A+ LGI+ +TL K++R Sbjct: 453 ALSAKKSHREQTAKALGISVRTLHYKMNR 481 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 171/448 (38%), Positives = 264/448 (58%), Gaps = 12/448 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL+VDD+ S L +L G+ V A +G +A++Q+ + DL+L D+ M MDG+ Sbjct: 3 PSILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMDGL 62 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 TLK+++ +P++PV+++T + ++ETAV+A K GA D++ KPL + + T+ AL Sbjct: 63 ETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNFRR 122 Query: 126 SIDAETPAVTA--SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + + + G SPA+ + ++I VAP+++ VLI G++GTGKE+VAR IH Sbjct: 123 LEEENLYLRKKALEKHSITGFSPAIMEVRNQINTVAPTDSWVLISGENGTGKEMVARTIH 182 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 SARS+ P+VT+NCA++++ +ESELFGHEKGAF GA +R+ GRF A+ GTLF DE+G Sbjct: 183 HLSARSDHPMVTVNCASISKKFMESELFGHEKGAFPGAKQRKRGRFELANQGTLFFDEVG 242 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+ Q R+LR ++ ++ QRVG + I+VDVR+IA+T+++L E+ G FR+DLYYRLN Sbjct: 243 DMDMETQSRILRVLENQKFQRVGGGRTITVDVRVIASTNKNLEEEIIKGAFREDLYYRLN 302 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA-VKGFTPQAMDLLIHYDWPGNIRELE 362 VV I +P L++R +DIP L F + FA + K + A++ L+ Y WPGN+REL Sbjct: 303 VVPIAMPPLKERAQDIPSLCEEFFREFAAADNLDEPKTISQNALEALMRYPWPGNVRELR 362 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV---------EVEKEVILAA 413 N VER V+ ++ R +P A Q + E I Sbjct: 363 NLVERLVISTKASHVDIRHIPPAYKDCAQEAIQDCGLDVFEVDSYKDAQKAFEIAYIQRQ 422 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 L K + A +G+ + + L + Sbjct: 423 LVKHDNDPDATAAAIGMDKSAIKKILKK 450 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 191/480 (39%), Positives = 272/480 (56%), Gaps = 40/480 (8%) Query: 1 MT-HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRM 59 MT H + ILVVDD+ + + + + + A+SG +ALE +R+ +++ D RM Sbjct: 1 MTQHADYPILVVDDEQDNLDAFRFNFKRA-FRLLCASSGEEALEILRDNEVAVIVTDQRM 59 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGA-LDYLIKPLDFDNLQATLE 118 M G+ L + + P +I+TAY+ ++ V+A+ G Y+ KP + L+ L Sbjct: 60 PRMTGLELLLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYRYVTKPWEAKELRGILT 119 Query: 119 KALAHTHSIDAETPAVTA----------------SQFGMVGKSPAMQHLLSEIALVAPSE 162 AL + + ++G S A+ +LS++ VAP+ Sbjct: 120 HALERYALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTN 179 Query: 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGAD 222 +TVL+ G++GTGKELVA AIH +S+R +P V +NCAAL +LESELFGHEKGAFTGA Sbjct: 180 STVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFGHEKGAFTGAV 239 Query: 223 KRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATH 282 +R GRF ADGGTLFLDE GD+ +Q++LLRA+QERE +RVG Q I VDVR+I+AT+ Sbjct: 240 AQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRVISATN 299 Query: 283 RDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFT 342 RDL A + AG FR+DLYYRLNV I +P LR R ED+P L HF+ +FA G Sbjct: 300 RDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVR 359 Query: 343 PQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPL--------AIASTPIPLG 394 A+D L Y WPGN+RELEN +ERA++L G + L ++ TP + Sbjct: 360 GAALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNATPVSGTPSVIS 419 Query: 395 QSQDIQP-------------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++ P L++ E+ I+AA+EK+ N AAR LGI R TL ++ + Sbjct: 420 ETASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARMLGINRSTLYYRMRK 479 >UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UE04_RHOBA Length = 481 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 179/474 (37%), Positives = 271/474 (57%), Gaps = 37/474 (7%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 +D +LVVDDD +Q L Y V A + + LE RE D VL D+++ + Sbjct: 2 NDCRTLLVVDDDPLILQCMQLCLPAPDYRVVTAVTAAKGLELFRETDPDAVLLDIQLPDQ 61 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+A + E + ++ +PV++MT + + ETA+ A+ GA +Y+ KP + D + ++ AL Sbjct: 62 SGLALIHEFREMDRRVPVILMTGHGTAETAITAISGGAFEYITKPFEPDGILPLIDSALE 121 Query: 123 HTH--SIDAETPAVTASQFG---------MVGKSPAMQHLLSEIALVAPSEATVLIHGDS 171 + AE P + ++G PAM + I VA +A VLI G++ Sbjct: 122 TSRMARRPAELPTDSGQPLDRSKATAADLILGSCPAMVDVFRSIGRVASRDAAVLILGET 181 Query: 172 GTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE 231 GTGKE+VARAI+ S R ++ +NCAA+ E+LLESELFGHE+G+FTGAD+RR G+F Sbjct: 182 GTGKEVVARAIYQHSQRHDQVFHAINCAAIPEALLESELFGHERGSFTGADQRRIGKFEI 241 Query: 232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNA 291 +GGTLFLDEIGD++P+MQ +LLR +QE+E +RVG ++ I DVR++AAT+RDL + + Sbjct: 242 CNGGTLFLDEIGDMTPVMQTKLLRVLQEKEFERVGGSKPIKTDVRILAATNRDLESAMAD 301 Query: 292 GRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 G FR DL+YRLN IE+P LR+R ED+ +A HF FA++ K P+ M L+ Sbjct: 302 GSFRSDLFYRLNEFTIELPPLRERGEDVARMAEHFFSLFADQLGKDFVSIAPETMQRLMA 361 Query: 352 YDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVE----- 406 + WPGN+REL+ V++ ++ +G I LP + P G + +I E E Sbjct: 362 HSWPGNVRELQGIVKQTLLKASGPVIVPAFLPSGFGESSSP-GNNVEISNGWESEVSKEI 420 Query: 407 --------------------KEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + +I ++ TG N +EA+ +LGI+R TL +++ Sbjct: 421 NRRLASGSCTVSEDIHNEVDRILIREVMKATGNNLSEASLRLGISRPTLRSRMK 474 >UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacteria RepID=Q47I00_DECAR Length = 457 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 191/458 (41%), Positives = 279/458 (60%), Gaps = 27/458 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M N+ ILVV+DD S + L G + G AL+ + EQ F +V+ DVRM Sbjct: 1 MAEHNLPILVVEDDPSLREAIADTLELAGRPCVAVDGGEAALKVLEEQAFSIVVSDVRMM 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDGI LKEI+A P +PV++MTAY+ V+ AV+A+++GA D+L+KP + L A + K Sbjct: 61 PMDGITLLKEIRARLPHLPVVLMTAYAEVDKAVDAMRSGACDFLLKPFEPQALLAHINK- 119 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 E PA + G+V PA + L + VA ++ATVL+ G+SG GKE+VAR Sbjct: 120 --------YELPA-SDDGSGVVAIDPASRELFAVAQRVAQTDATVLLTGESGVGKEVVAR 170 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH SAR P V +NCAA+ +SLLE+ LFG+EKGAFTGA + + G+F +A GTL LD Sbjct: 171 FIHRQSARKNGPFVAINCAAIPDSLLEATLFGYEKGAFTGAQQAQAGKFEQAQDGTLLLD 230 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ ++ +Q +LLR +QEREV+RVG + +++++R+IA ++RD+A V G FR+DLYY Sbjct: 231 EVTEMPMGLQAKLLRVLQEREVERVGGKKPVALNIRIIATSNRDMAEAVAKGVFREDLYY 290 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV + +PSLRQRR DI +A HF+ R + +P A L + WPGN+RE Sbjct: 291 RLNVFPVGIPSLRQRRGDIVPIARHFVVEHGGRFGRTGMSLSPAAEAALREHSWPGNVRE 350 Query: 361 LENAVERAVVLLTGEYISERELPLAIAST-----------PIPLGQS------QDIQPLV 403 LEN ++RA+++ TG I L LA S+ P+P+ S + + + Sbjct: 351 LENVIQRALIMATGSTIGPEVLNLAPRSSGETAVVQPAAAPMPVEHSGLTDTDKKVDNMK 410 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++E+E IL L + GG++ +A +LGI+ +TL KL + Sbjct: 411 DLEREHILRTLAEVGGSRKKAIERLGISERTLRYKLQQ 448 >UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Firmicutes RepID=B8FXS0_DESHD Length = 463 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 177/458 (38%), Positives = 269/458 (58%), Gaps = 19/458 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M H + IL++DD+ + I+ L+ GY V A + + L + + + D VL D+++ Sbjct: 1 MKH-SQKILILDDEEALRAIIAQRLKRKGYEVLEAGTAGEGLAFLNDTLVDAVLLDIKLP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + DG+ L +IK + + V+++T ++E+A+EA+K GA DYL KP + L+ TL+KA Sbjct: 60 DGDGLLLLPKIKQMQTDLQVIMLTGNGTIESAIEAMKLGAYDYLTKPCNLSELEITLQKA 119 Query: 121 LAHTHSIDAET-----PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + T + AS+ +V +S AM LL+ VA ++ +VLI G+SG GK Sbjct: 120 LEKRRLLLENTGLRQVVSRHASELKIVAESEAMTSLLNMTRKVAQTDTSVLIQGESGVGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+A+AIH S+R +P + +N A+ E+L+ESELFGHEKGAFTGA ++ G AD G Sbjct: 180 ELIAQAIHFWSSRVNRPCIPVNAGAIPETLIESELFGHEKGAFTGAGTQKIGLVEMADNG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++ +QV+LLR ++ E +RVG ++ VDVR++AAT+RDL E+ GRFR Sbjct: 240 TLFLDEIGEMPLAIQVKLLRFLESGEFRRVGDTRLRQVDVRIVAATNRDLGQEIAQGRFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLN + + VP LR+RR DI L HFL+ + P+ + L++YD+P Sbjct: 300 EDLFYRLNGLTLLVPPLRERRGDILPLVHHFLKTQRKELPHERYSLAPETQEQLLNYDFP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLG-------------QSQDIQPL 402 GN REL + +ER +L I+ ++ ++ + Q L Sbjct: 360 GNTRELFHLIERGQILSADGIITPGDIWPEKSAPTLKSSSAFASEEEFLQIFQEHPYPSL 419 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +VEK IL+ L+K GNKT+ A LGI+ + L KL Sbjct: 420 DDVEKAYILSTLKKAKGNKTQTAHILGISVRNLYRKLQ 457 >UniRef50_Q027R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=Q027R3_SOLUE Length = 477 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 177/463 (38%), Positives = 253/463 (54%), Gaps = 25/463 (5%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + I +L+VDD+ S L A++ WG A G +ALE + D++L D+ M + Sbjct: 2 NQQIRVLIVDDEESQRAGLAAMVSAWGMLPKTAADGNEALETLNSFPADVILTDLNMPGL 61 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALK-TGALDYLIKPLDFDNLQATLEKA- 120 DG L+ ++ P +++TAY ++ETAV+ + GA +L KP+ L+ + +A Sbjct: 62 DGFGFLQRLREAGDMPPTIVLTAYGNIETAVKTVHELGAYWFLEKPIQAGTLEVLVRRAG 121 Query: 121 ----LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 L + S MVGKSP MQ + + + PS A VLI G+SGTGKE Sbjct: 122 SHAELNQEKRVLERNLVYKGSLGEMVGKSPRMQEIFALLQQAGPSRAGVLITGESGTGKE 181 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 +VAR +HA S R + P V +NCAAL ESL+ESELFGHEKG+FTGA +RR G F A GT Sbjct: 182 MVARTLHALSPRRQGPFVAINCAALPESLIESELFGHEKGSFTGATERRAGCFELAQNGT 241 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 L LDEIG++ Q +LLR +++ +V+R+G VDVR++AAT++ V G R+ Sbjct: 242 LLLDEIGEMPMATQAKLLRILEDSKVRRLGGRTEFEVDVRVVAATNKVPEEAVQGGHLRE 301 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNV + +P LR R++DI +A + ++ V M L ++WPG Sbjct: 302 DLFYRLNVFHVHLPPLRDRKDDIQAMADALIADLNRKHECRVTEIAAAVMTCLQRHNWPG 361 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ---------------- 400 N+REL N +ERAV+L I + LP+ + + P + S + Sbjct: 362 NVRELRNVLERAVILAGEGTIEVKHLPVFLQNRPATVVASDEPAAVAATAADDLETVRFL 421 Query: 401 ---PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + E EK +IL LE T NKT AA LGI+ KTL KL Sbjct: 422 IGTTVEEAEKGLILRTLEHTNNNKTRAADILGISLKTLHNKLK 464 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 188/444 (42%), Positives = 271/444 (61%), Gaps = 11/444 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-----QVFDLVLCDVRMAE 61 IL+ DDD + L+ L GY V A +G A+ DL+L D+R+ Sbjct: 3 TILIADDDKAIRRTLELHLTEVGYRVVTAANGSDAVNLALADTAIGHNIDLMLLDLRLTG 62 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK-- 119 MDG L +K P +P++++TAY ++TA++A++ GA+D+L KP+D D+L ++K Sbjct: 63 MDGFEVLTLVKEKKPFLPIIMITAYDEMQTAIKAIRLGAIDHLGKPVDLDHLDEVIDKIF 122 Query: 120 ---ALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 AL+ T +++ Q MVG++ AM+ + I VA S ATVLI G+SGTGKE Sbjct: 123 EMSALSRTGVTFSDSFDPHFEQNIMVGRTRAMKEVYKTIGAVADSRATVLIQGESGTGKE 182 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 +VARAIH +S +P + + C+AL+ ++LESELFGHEKGAFTGA + + G+F A GGT Sbjct: 183 MVARAIHFNSQFRNRPFIAVACSALSPTILESELFGHEKGAFTGAIRTKPGKFELAQGGT 242 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEI +ISP +QV+LLR IQERE +RVG + I DVR++AAT+++L+ V +G FR Sbjct: 243 LFLDEISEISPEIQVKLLRFIQEREFERVGGIETIKADVRIVAATNKNLSTLVASGMFRN 302 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRL VV+I++P LR+R+EDIP+L L++ K V+ + M+ ++ + WPG Sbjct: 303 DLYYRLKVVSIDLPPLRERKEDIPILVKFLLEKLHHETGKRVEIIPQETMNKILEHSWPG 362 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK 416 N+RELEN + RAV+L G + L L ++PL EVE+E I L Sbjct: 363 NVRELENTLRRAVILSHGNMLLPESLHLE-EGCDGQERFPLLLKPLHEVEREHIQNVLCY 421 Query: 417 TGGNKTEAARQLGITRKTLLAKLS 440 K AA LGI+R TL ++ Sbjct: 422 VRNEKKRAAEILGISRPTLDRRIK 445 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 182/450 (40%), Positives = 267/450 (59%), Gaps = 12/450 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ D + ILV DDD + IL+ L +AN G QAL+ + E DLV+ D +M Sbjct: 1 MSRD-LTILVADDDRTTTAILKNTLEKQSLTPVVANDGIQALKILEETPVDLVIADYQMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +DG L+ +K IP +++TA+ SV+ + A++ GA++YL+KP+D ++ +EK Sbjct: 60 GLDGFELLQAMKDRGMDIPFVMVTAHGSVDMTMNAMRLGAIEYLVKPVDPLDIVVLVEKT 119 Query: 121 LA----HTHSIDAETPAVTASQF-GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + + F +VG+SP MQ L I + S A VLI G+SGTGK Sbjct: 120 LNINRMKSRLSRLQKEVEKKYHFTNIVGQSPQMQILFESIHKASKSTANVLITGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL A+A+H + E P V +NC+A + LESELFGH KGAFT A + GRF A+ G Sbjct: 180 ELAAKAVHYNGPLKEGPFVAVNCSAFSSGTLESELFGHVKGAFTDAHRDHMGRFELANKG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDE+GDI +QV+LLR +Q++ +RVG+ + I D RL+AAT+RDL V G+FR Sbjct: 240 TLFLDEVGDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLKDLVRKGKFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV+ + P+LR+ EDIPLL HFL+R+ + +++K + AM ++ Y WP Sbjct: 300 EDLFYRLNVIGMTTPALREHPEDIPLLISHFLKRYGQVGGRSIKTLSMHAMKIMQEYRWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI------QPLVEVEKEV 409 GN+R+LENA+E A + G I +LPL I + +D + + +EK + Sbjct: 360 GNVRQLENAIESAAAMCDGSMIRTADLPLEITAPQSEDPLREDAYRGTLPEVVERIEKHM 419 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKL 439 IL ALE+ K AAR LG++ + + K+ Sbjct: 420 ILRALEQNQWVKAHAARTLGVSERVVSYKM 449 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 196/450 (43%), Positives = 281/450 (62%), Gaps = 19/450 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDDD + +A L G+ V +A+SG +AL ++ E ++ D++M ++DGIA Sbjct: 622 VLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIAL 681 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 ++ + AL P++PV+++TA+++VETAVEA++ GAL YL KPL FD L L A+AH + Sbjct: 682 MERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDELALVLRHAVAHERAR 741 Query: 128 DAETP-----AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 A +VG +PAM+ + + + VAP++ATVL+ G++GTGKELVARAI Sbjct: 742 RDVLRLRGELERAAGFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVARAI 801 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R ++P V +NC A+ + L+ESE FGHEKGAFTGA RR GRF +ADG TLFLDE+ Sbjct: 802 HRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLFLDEV 861 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+ +Q +LLR +QE+E+ RVG+ + VDVR++AAT+RDL A V+ GRFR DL+YRL Sbjct: 862 GDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLFYRL 921 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ + +P LR+R +D+P L HFL+ FA+R + P + Y WPGN+REL Sbjct: 922 NVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNVRELR 981 Query: 363 NAVERAVVL---------LTGEYISERELPLAIASTPIPLGQS--QDIQPLVE-VEKEVI 410 N ERAV++ G ++ R P A A P+ + Q LVE E+E + Sbjct: 982 NLCERAVLMGWAAVAPIFGAGAGVTPR--PDAGAGVPVDTSLPLLEARQRLVERFEREYL 1039 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L++ G E AR GI + L K+ Sbjct: 1040 TRLLKERRGRIGEVARAAGIAERNLYEKMK 1069 >UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMI3_ACIF5 Length = 461 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 184/449 (40%), Positives = 263/449 (58%), Gaps = 13/449 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M IL +DDD +L L GY+V ++ Q ++ ++ DLV+ D+RM Sbjct: 1 MPRPAPIILTIDDDPDFLRLLGLWLESEGYHVLASSDPVQGMQTLQTARPDLVITDLRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG+A L+ ++AL+P +PV+++TA+ S+ AV A++ A YL KP + LQ A Sbjct: 61 GMDGMAVLETVQALDPDLPVILLTAHGSIPNAVAAMRAQAFGYLSKPFSNEELQELTTAA 120 Query: 121 LAHTHSIDAETPAVTASQFG----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 LA H+ A + ++ +SPAM L+ E+A VA S+A+V + G+SG+GKE Sbjct: 121 LAQRHAGQETRKLRAALRQQAGQSILHRSPAMAALVDELACVANSKASVFLSGESGSGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 VARAIH +S R + P V +NC A+ L ESELFGH KGAFTGA + G A GGT Sbjct: 181 RVARAIHDASPRRDGPFVAVNCGAIPAGLAESELFGHVKGAFTGATQDHTGLIRSASGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEI D+ +QV+LLR +QE ++ VG+ ISVD+R+I+ATH+D+ A G FR+ Sbjct: 241 LFLDEIADLPLTLQVKLLRVLQEGSLRPVGAKTEISVDLRVISATHQDIHALTADGTFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRL+V+ + VPSL +R EDIPLLA HFL R ++R + + GF+P+A+D L+ WPG Sbjct: 301 DLYYRLHVIPLRVPSLSERAEDIPLLAQHFLDRESQRMNRDILGFSPEALDKLMQRSWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE----VEKEVILA 412 N+RELENAV A + +++ +P G PL + E+ + Sbjct: 361 NVRELENAVTFAAAVTEKGWVAADAIPDNGRQ-----GGQSAFPPLQDAKAAFERGYLEN 415 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L T GN + AAR G R L + + Sbjct: 416 LLRATDGNISRAARIAGRHRTDLYKLMRK 444 >UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=B4ULA9_ANASK Length = 459 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 186/448 (41%), Positives = 273/448 (60%), Gaps = 9/448 (2%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + ++V+DD S +++ L Y+V S A+ V FD ++ D+RM Sbjct: 3 SAKKPSLMVIDDLDSARQMMKRTLARS-YDVYDFASVADAVPAVERADFDCIVTDLRMPG 61 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DGI L+ +A P IPV+++TA+++VETAVEA+K GA DYL KP + + L+ + +A+ Sbjct: 62 IDGIEGLRRFQAKVPEIPVILVTAFATVETAVEAMKAGAFDYLKKPFEPEELELVVARAV 121 Query: 122 AHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 H +A S G+VGKS AM+ L+S + +APS+ +LI G+SGTGK+ Sbjct: 122 EHARVKKENARLRSALAGQFSVHGIVGKSQAMKDLVSMLERIAPSDVPILIEGESGTGKD 181 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+ARA HA S+R++ P V LN +A+ E+L ESELFGHEKGAFTGAD+ R G F EA+GGT Sbjct: 182 LLARAAHALSSRAQGPYVALNMSAIPENLAESELFGHEKGAFTGADQPRAGFFAEAEGGT 241 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDE+G + P +Q +LLR +Q+ E VGS + +VR++AAT+ DL V G+FR+ Sbjct: 242 LFLDELGLLPPALQPKLLRVLQDGEFIPVGSRKPRKANVRVVAATNEDLQRRVKEGKFRE 301 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL++RL VV + +P LR+RREDIPLL H +Q+ A R + +AM L+ + WPG Sbjct: 302 DLWFRLRVVPLRLPPLRERREDIPLLVEHLVQKHALRLSRPPLQPDAEAMRALLDHPWPG 361 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI---QPLVEVEKEVILAA 413 NIRELE+A+ER ++L G+ I+ +LP + G + + + E+ + Sbjct: 362 NIRELEHAIERGLLLARGDAITLADLPPELTPPAEAAGGADEGRYRRARDAWERRFLEDV 421 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 L + GG AA G+ R T KL+R Sbjct: 422 LREAGGQVARAAELSGLHRSTFYEKLAR 449 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 589 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 179/474 (37%), Positives = 271/474 (57%), Gaps = 37/474 (7%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +L++DDD +L+++ G Y + L + AL++V ++ + D+ + + G Sbjct: 2 TAKLLILDDDHDILLMLKSVFAGEDYELLLESDSEGALKRVISDRPNVAIMDISLPQKSG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA-- 122 I LKE K ++P + V++ T Y + + A+EA+K GA DY+ KP D L+ ++KAL Sbjct: 62 IEVLKEAKKIDPGLAVIMATGYKTTQNAIEAMKHGAFDYVTKPFDMTKLKGAVKKALECN 121 Query: 123 ---HTHSIDAETPAVTAS--QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 E P V + M+G SP M + + VA S+ATVLI G+SGTGKEL Sbjct: 122 LLSRKVRYTRERPQVEEDLTEDLMIGSSPEMIEIWKMVGTVADSDATVLIQGESGTGKEL 181 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 +ARA++ +S R +P + +NCAAL E+LLESELFGHEKGAFT A RR G+F + +GGT+ Sbjct: 182 LARAVYNNSKRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHSRRIGKFEQCNGGTI 241 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG++S Q + LR ++ +E +RVG N+ I VDVR+IAAT++ L V FR D Sbjct: 242 FLDEIGEMSQANQGKFLRVLENQEFERVGGNETIKVDVRVIAATNKSLITNVKEKTFRMD 301 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRL VV +P LR R EDIPLL F+++F+++ K +K P+ + +L + W GN Sbjct: 302 LYYRLRVVNFFLPPLRDRAEDIPLLVELFVKKFSKKYGKNIKAVAPETLAMLTSHPWEGN 361 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTP----IPLGQSQD---------IQPLVE 404 IREL+N + A V G+ + + + + + L + D ++P+ + Sbjct: 362 IRELKNVINSATVFCRGDILVPGDFESFLTAKAGFKEVDLEAAGDDYYEVFWSMLEPVFD 421 Query: 405 -----------------VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +EK +I A+EK+ N+ AA+ LGI+R TL +L R Sbjct: 422 GICQKNKGAIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLER 475 >UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZNW8_9PLAN Length = 466 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 201/440 (45%), Positives = 283/440 (64%), Gaps = 6/440 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ++LVVDD+ + +L G+ A +S +AL+++ +D V+ D++M MDG+ Sbjct: 12 NVLVVDDNARARQSIVDVLEMLGHRGAACSSAHEALKRMETIDYDAVVTDLQMPGMDGLE 71 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 +++I+ + IP++++TA+ SV TAVEA++ GA DYL KPL+ D L+A + + L S Sbjct: 72 LVRQIRRRDAHIPIVMVTAHGSVSTAVEAMRFGAADYLEKPLNADRLEAVVNRVLESAAS 131 Query: 127 IDAETPAVTAS--QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 D T A Q M+G+S AMQ + +IA VAP++ TVLI G+SG GKEL+AR IH Sbjct: 132 GDRATVATPGETNQVAMIGESRAMQQVRQQIAQVAPTDETVLIIGESGVGKELIARTIHE 191 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 SS R+ + L++LNC L+ L+ESELFGH +GAFT AD R GRF A+ GT+ LDEI + Sbjct: 192 SSRRAGRALISLNCPVLSAHLMESELFGHTRGAFTSADSARVGRFELAEQGTILLDEISE 251 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 I +Q +LLR +QER +RVGS++ + DVR++A ++RDL EV AGRFR+DLYYRL V Sbjct: 252 IDLSLQAKLLRVLQERCYERVGSSETLETDVRVLATSNRDLPGEVTAGRFRRDLYYRLAV 311 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 V IE+P LRQRR+DIPLL +FLQ+ A R K V +A+DLL+ +DWPGN+RELEN Sbjct: 312 VPIELPPLRQRRDDIPLLVDYFLQQTAARLEKPVFDMRAEALDLLMRHDWPGNVRELENI 371 Query: 365 VERAVVLLTGEYISERELPLAIA-STPIPLGQSQDIQ---PLVEVEKEVILAALEKTGGN 420 V RA VL IS + ++ G SQD L E+E+ +I A LE G+ Sbjct: 372 VTRACVLAIDGQISADDFSSWLSCEAREETGDSQDAPVGVKLDEMERRLISATLEHYDGH 431 Query: 421 KTEAARQLGITRKTLLAKLS 440 + + A LGI+ +TL KL Sbjct: 432 REKTAAALGISPRTLSNKLR 451 >UniRef50_B3QW87 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW87_CHLT3 Length = 497 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 177/482 (36%), Positives = 275/482 (57%), Gaps = 48/482 (9%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ ++ L GY V +A +G + Q ++ D+++ D + +++GI Sbjct: 3 TILVVDDEPVVTDYIKEALSEEGYAVEVAYTGNDGIVQAKKVSPDVIILDFMLPDLNGIE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK+++ L+ ++ V+++TAY+SV TA+EA++ GA DY++KP D D + T+ K H Sbjct: 63 VLKKLRQLDESLQVIMLTAYNSVPTALEAVRNGAADYILKPFDLDAFKITVAKICEKAHL 122 Query: 127 IDAETPAVTASQFGMVGK------SPAMQHLLSEIALVAPS-EATVLIHGDSGTGKELVA 179 + + + G S M + + VA + + TVLI G+SG GKE +A Sbjct: 123 TNQLRFLREDNAKKLAGNEFLLCPSVQMAKVYDLVFQVAQTNDTTVLILGESGAGKEHIA 182 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 + IH +S+R+ KP V +NCAA+ E+LLESELFGHE GAFT A ++ G F ADGGT+FL Sbjct: 183 KLIHQNSSRAAKPFVEMNCAAIPENLLESELFGHEPGAFTDARSKKLGLFEYADGGTIFL 242 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ Q ++L+ ++ +E +RVG + I DVR++AAT++DL+ E++ G FR+DLY Sbjct: 243 DEIGDMPLATQAKILKVLETKEFRRVGGLRDIKSDVRVVAATNKDLSFEIDRGNFREDLY 302 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL VV I++P LR+R+EDI LA FL+ RK ++ + A L+ Y W GN+R Sbjct: 303 YRLQVVPIDIPPLRERKEDILHLANFFLEMTGRSMRKRLE-LSGDAASALLSYTWKGNVR 361 Query: 360 ELENAVERAVVLLT-GEYISEREL---PLAIASTPIPLGQSQDIQP-------------- 401 EL+N +ERAV++ G I L P+++A + +P Sbjct: 362 ELKNVIERAVIVTPNGSRILPEHLAFKPMSVAELAKKSEEFLIPKPDYEARQAEQQRQAE 421 Query: 402 ----------------------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 L ++E++ +L ALEKTGGN+ +AA+ LGI R L ++ Sbjct: 422 QRSNGLSFSLSKFYDGFSLKAHLEQIERQYLLDALEKTGGNQLQAAKLLGIERHVLRYQM 481 Query: 440 SR 441 + Sbjct: 482 KK 483 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 589 bits (1519), Expect = e-167, Method: Composition-based stats. Identities = 180/445 (40%), Positives = 266/445 (59%), Gaps = 13/445 (2%) Query: 10 VVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLK 69 VVDD+ + +L LL +G +A++ +A ++E+ +DL L D+R+ + GI LK Sbjct: 5 VVDDEKNISELLSILLSEYGIESDIASTYSEARSFIQEKYYDLALLDLRLPDGSGIDILK 64 Query: 70 EIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDA 129 +IK NP V+I+TA++S ETAVEA+K GA DY+ KP + ++L+ + Sbjct: 65 QIKEKNPKTEVVIITAFASSETAVEAIKLGAYDYISKPFNINDLRLIIRNVKEKIDLERR 124 Query: 130 ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARS 189 G+ GKS A+Q++ I +AP + VLI G+SGTGKE+ A+ IH S+R Sbjct: 125 ICVEEEERLEGLAGKSQAIQNVKDTIKKIAPYDINVLIVGESGTGKEVAAKMIHRLSSRK 184 Query: 190 EKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMM 249 KP V +NCA+L LLESELFG++KGAFTGA ++G EA+GGTLFLDEIG++ + Sbjct: 185 NKPFVAINCASLPAELLESELFGYKKGAFTGAVSDKKGLIEEANGGTLFLDEIGEMPMPL 244 Query: 250 QVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEV 309 Q +LLR ++E+ ++ +GS + I VDVR+I+AT+R+L E+ G FR+DLYYRL + I++ Sbjct: 245 QAKLLRFLEEQIIRPLGSTKEIKVDVRIISATNRNLEEEIKKGNFREDLYYRLATIIIKM 304 Query: 310 PSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAV 369 PSLR+R+EDIPLL L+ + K +K +P M LI YD+ GNIREL+N +E+AV Sbjct: 305 PSLRERKEDIPLLVEQILKEIKMKYNKNIKRISPDFMKYLISYDYKGNIRELKNLLEKAV 364 Query: 370 VLLTGEYIS-------------ERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK 416 +L GE ++ P + L +EK +I ALEK Sbjct: 365 ILSDGEELNFIPAFPEKFNSLYIDNPEDEFTVKSFPEEGVDLKEVLSRIEKALIFKALEK 424 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 G K++AA L +T + +LS+ Sbjct: 425 AEGKKSKAADILRLTFREFRYRLSK 449 >UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2X1_9BACT Length = 519 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 179/403 (44%), Positives = 252/403 (62%), Gaps = 7/403 (1%) Query: 1 MTHDNID-ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV-FDLVLCDVR 58 M ILV+DDD L +L Y V A SG + + V++ D+V DVR Sbjct: 1 MPDSKPPVILVIDDDAEVRYSLSRVLSSKSYQVVEAASGEEGVGLVKKGPAPDVVFLDVR 60 Query: 59 MAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE 118 M M G+ L+ I+++NP V++MTA+ + +TA+EA+K GA DY++KP D + A E Sbjct: 61 MGGMSGLEALQHIRSVNPRQLVILMTAFGTAQTAIEAMKFGAFDYIMKPFDPAKVLALAE 120 Query: 119 KALAHTHSIDAE-----TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGT 173 AL H + A T V + G+VG SP MQ + + V S+ TV+I G+SGT Sbjct: 121 NALKAHHDMRAAGEYKPTINVDDYREGIVGASPVMQDVFKIVGQVTASDVTVMITGESGT 180 Query: 174 GKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD 233 GKELVAR+I S R+ K + +NCAA+ ++L+ESELFGHEKG+FTGA +R G+F D Sbjct: 181 GKELVARSIWKHSHRAAKSFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRIGKFELCD 240 Query: 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR 293 GT+FLDEIGD++ Q ++LR +Q+ E+QRVG I VDVR+IAAT++DL A V A Sbjct: 241 RGTIFLDEIGDMALATQTKILRVLQQGEIQRVGGTDTIKVDVRIIAATNKDLEAMVKAKT 300 Query: 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 FR+DLYYRLNVV I++P LR+R DIP + LQ ++ + V +P+AM++L +D Sbjct: 301 FREDLYYRLNVVRIKMPPLRERTGDIPQIVDFCLQNLVKQKKARVGKVSPEAMNILARHD 360 Query: 354 WPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQS 396 WPGN+RELEN V R+ V+ G+ I ++LP+ I PL + Sbjct: 361 WPGNVRELENVVYRSAVIAQGDMILPKDLPVEIRDAVPPLATA 403 Score = 52.9 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 396 SQDIQP-LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + DI+P L +E+E+I T GN ++A LGITR TL +L Sbjct: 470 TADIEPILKRLEREMIARVYRATDGNIAKSADLLGITRPTLKKRLE 515 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 177/441 (40%), Positives = 261/441 (59%), Gaps = 4/441 (0%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 IL++DDD S +L G GY V + + LE D+++ D+R+ +MDG Sbjct: 3 KKKILIIDDDASQLELLNIFFSGRGYAVHCSATAMAGLEARATFHPDVIVLDIRLPDMDG 62 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 I L+ + +I V+++TAY +ET V+A+K GA +Y+ KP+D D L+ + +AL ++ Sbjct: 63 IEVLRSLDTGKSSINVIMITAYHDMETTVKAMKLGAYEYITKPIDVDELEDAVCRALKNS 122 Query: 125 HSIDA-ETPAVTA--SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 +A E PAV + M+G S M+ + I +++ + TVLI G++GTGKEL+ARA Sbjct: 123 ELREAKELPAVKTFLQKGPMIGNSKPMKEVFKMIGVLSENNVTVLIEGETGTGKELIARA 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH + P + +NC+A+ +LLESELFGHEKGAFTGA ++G+F A GT+FLDE Sbjct: 183 IHDYGPHKDHPFIPINCSAIVGTLLESELFGHEKGAFTGAFATKKGKFELAGEGTIFLDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 +G+I +Q +LLR +Q++ QRVG + + R+I AT++DL V AG FR+DLYYR Sbjct: 243 MGEIPIELQAKLLRFLQDKAFQRVGGEKFLHSKARVIVATNKDLLQMVRAGTFREDLYYR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L+ I VP LR+RREDIP L H ++ K + +A+ ++ YDWPGN+REL Sbjct: 303 LSAAKINVPPLRKRREDIPFLLDHMVKEINAELGKRIDRVDKKALLRMMEYDWPGNVREL 362 Query: 362 ENAVERAVVLLTGEYISERE-LPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 N + A + GE + + LP A T + L EVE+E IL L T GN Sbjct: 363 RNVLTGAAISTRGETLLDDAILPFLGAGTVQDIFPPGAALSLREVEREHILKILHYTNGN 422 Query: 421 KTEAARQLGITRKTLLAKLSR 441 T +A+ LGI+R TL K+ + Sbjct: 423 ITSSAQILGISRPTLRQKIRQ 443 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 193/477 (40%), Positives = 285/477 (59%), Gaps = 44/477 (9%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVF-DLVLCDVRMAEMDGI 65 +LVVDDD + ++QA+L G+ VA A SG QA+ ++ D+VL D+ M + G Sbjct: 4 TVLVVDDDPTQRRLIQAVLEREGFAVAHAESGDQAISRLASGAAADVVLLDLVMPGISGQ 63 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 TL E++A + PV+++TA ++T V+A++ GA+D+ +KP + + ++ AL+ Sbjct: 64 DTLVEMRARGFSQPVIVVTATGGIDTVVQAMQAGAVDFFVKPAAPERIIVSIRNALS-MG 122 Query: 126 SIDAETPAVTASQFG------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 ++ E + G ++G SPAM + A S +LI G+SG GKE++A Sbjct: 123 ALKGEVDRLKKHASGRTTFDDLIGASPAMVMVKRLGERAARSSIPILITGESGVGKEVIA 182 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RA+H SS R+ KP V +NC A+ E+L+ES LFGHEKG+FTGA + G+F EA+GGTLFL Sbjct: 183 RAVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFQEANGGTLFL 242 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DE+G++ MQV+LLRA+QE E+ +GS + + VDVR+++AT+RDL+ V GRFR+DLY Sbjct: 243 DEVGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLSQAVAEGRFREDLY 302 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNV IE PSLR+R+EDIP L F++RF KAV G P+ + L +DWPGN+R Sbjct: 303 YRLNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGKAVVGAAPETLACLTGFDWPGNVR 362 Query: 360 ELENAVERAVVLLTGEYISERELP-----------------------------------L 384 +LENAV RA+VL Y+ + P L Sbjct: 363 QLENAVYRAIVLADAPYLQPHDFPAISGIAAPPPEALAPKAVTASAPGPVPSAGELAAEL 422 Query: 385 AIASTPIPLGQSQ-DIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 P+P+ ++ I+PL E+E+++I A+E G+ +E AR+LGI R TL K+ Sbjct: 423 PQPQAPVPILDARGHIRPLDEIERDLIQHAIEVYSGHMSEVARRLGIGRSTLYRKVR 479 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 169/439 (38%), Positives = 266/439 (60%), Gaps = 6/439 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L++DD+ ++ + ++ G+NV A + + A + + ++ D+VLCDV++ + G+ Sbjct: 4 TVLIIDDEEKLRSLTKRIIALEGFNVLEAGNIKSAQKIIEKEEIDVVLCDVKLPDGSGVD 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 + IK NP+I ++++TAY ++ V+A+K GA DYL K D + + L +AL Sbjct: 64 YARTIKEKNPSIEIILLTAYGNIPDGVQAIKNGAFDYLTKGDDNNRIIPLLNRALEKVQL 123 Query: 127 IDA----ETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 E+ F ++G S ++ + + + VAP++ TVL+ G++GTGKE+ A+A Sbjct: 124 QKRIEKLESQVGKKYSFDTILGTSRPIRDAIEQASKVAPADTTVLLLGETGTGKEVFAQA 183 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R+ KP V LNC+A + LLESELFG++ GAFT A++ ++G EA+ GT+FLDE Sbjct: 184 IHNNSKRNGKPFVALNCSAFSRELLESELFGYKAGAFTNANRDKKGLIEEANTGTIFLDE 243 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ +Q +LLR ++ E +VG + V+VR+IAAT+RDL E G FR+DLYYR Sbjct: 244 IGEMPLDLQSKLLRVLETGEFIKVGDTKPTKVNVRIIAATNRDLKEESQKGHFREDLYYR 303 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV AI +P LR+R++DIP LA +F+ F+ + + + TP ++ L ++W GNIREL Sbjct: 304 LNVFAITLPPLRERKKDIPQLAEYFVGIFSAKINQRKQKVTPAFIEKLQLHEWKGNIREL 363 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNK 421 +N +ERAV++ G+ ++ LPL + L VEK I+ L T NK Sbjct: 364 KNVLERAVIMAGGDDLAVEHLPLDL-QIADKASTPLSAFDLASVEKLHIIRVLYHTKNNK 422 Query: 422 TEAARQLGITRKTLLAKLS 440 TEAAR L I TL K+ Sbjct: 423 TEAARLLNIGLATLYRKIE 441 >UniRef50_Q1Q480 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q480_9BACT Length = 457 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 175/445 (39%), Positives = 272/445 (61%), Gaps = 8/445 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE- 61 D +L+V+D+ + IL LR G V +SG +A E +++Q F +++ D+R++ Sbjct: 1 MDKARVLIVEDEDIYRKILCNTLREHGIEVQATDSGEEAWELIKQQRFPVIISDIRLSGN 60 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 + G+ L++ K L +L++TA+ +E AVEA++ GA Y+ KP + +++ A L++ + Sbjct: 61 ISGMDLLRDAKELY-DPSILMITAFGEIEMAVEAMRLGAFSYITKPFEVEDILANLDRMM 119 Query: 122 AHTHSIDAE----TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 SI + + G++G S M L++ A S+AT+LI G+SGTGKEL Sbjct: 120 LQQRSISDHLLPSNVEELSQRTGIIGNSKKMCDLVNIALKAARSDATILITGESGTGKEL 179 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 +A+AI+ +S+R K V +NCA L + LES LFGH KG++TGA K + G F +ADGGTL Sbjct: 180 IAKAIYMNSSRKNKEFVAINCATLTDEFLESALFGHVKGSYTGAMKDKIGLFEKADGGTL 239 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 F+DE+GD S +Q ++LR +QE E +GS +VR+IAAT++DL V FR+D Sbjct: 240 FMDEVGDTSKSIQAKILRVLQEGEFIPLGSTDTKKANVRIIAATNKDLLQSVEKNEFRED 299 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRLNV+ I +P LR+R+ DIPLL HF+++ + K V P+ ++L+ YDWPGN Sbjct: 300 LYYRLNVINIAMPPLRERKSDIPLLINHFIKKNNVKLNKKVIRIAPEIEEILMDYDWPGN 359 Query: 358 IRELENAVERAVVLLTGEYISERELPLAI--ASTPIPLGQSQDIQPLVEVEKEVILAALE 415 +RELEN +ER +VL +G ++++ LP + IP E EKE+I+ L+ Sbjct: 360 VRELENVIERTMVLCSGNKLAKKHLPGCVLPQKGDIPPITIAPGTSWKEAEKELIMKTLQ 419 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 T GNK EAA+ LGI+ + + ++ Sbjct: 420 LTRGNKQEAAKMLGISLRKIEYRVK 444 >UniRef50_Q7UVC1 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UVC1_RHOBA Length = 498 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 174/443 (39%), Positives = 249/443 (56%), Gaps = 7/443 (1%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 D + IL DD+ ++ L GY V + G A++ + ++ D +L D+ M M Sbjct: 48 DGMHILFADDEPQLQKLMGTELPRMGYRVTVCPDGPTAVDVLSKEPIDCLLVDLDMPGMS 107 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 GI + + + P I +IMT S ETA+EAL+ G DYL+KP + A + + Sbjct: 108 GIEVIARAREIRPEIEAVIMTGNPSQETAIEALRHGTFDYLMKPCRLAEISALMGRVSER 167 Query: 124 TH-----SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + ++G++ +M + IA VAP+E+TVLI G++G GKELV Sbjct: 168 REWNRLVAALRHRLQRAEGDSDLIGENQSMHAVRKLIAKVAPTESTVLIRGETGCGKELV 227 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARAI S RSE+P V +NC AL E+L+ESELFGH KGAFTGAD R G F A GGTLF Sbjct: 228 ARAIADESLRSEQPFVAINCGALPETLIESELFGHVKGAFTGADSGRMGLFEVASGGTLF 287 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDE+G++ +Q +LLR ++ +++R+G NQ I VDVR++ ATHRDL V G FR+DL Sbjct: 288 LDEVGELPLAVQAKLLRVLETGDIRRLGDNQSIKVDVRVVCATHRDLEKMVTEGTFREDL 347 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +R+N + +P+LR R +D+P LA H L+R + + + FT AM L + WPGN+ Sbjct: 348 MFRINTFELRLPALRDRIDDLPALAEHLLRRH-RADGTSGQLFTEAAMAELQSHQWPGNV 406 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-PLVEVEKEVILAALEKT 417 REL N +E A VL I LP A + + + E+E I A+ + Sbjct: 407 RELANVIEHASVLCDALPIDVEHLPQHFARRQLRADLADTAPMTMREIELRAIERAMTRH 466 Query: 418 GGNKTEAARQLGITRKTLLAKLS 440 GNK A +LG++ KTL KL+ Sbjct: 467 NGNKKAVAEELGMSLKTLYNKLN 489 >UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=B3E6U1_GEOLS Length = 467 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 178/458 (38%), Positives = 267/458 (58%), Gaps = 18/458 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT D IL++D++ C +++ +L GY V S +A+E+ +DLV+ D++M Sbjct: 1 MT-DKQRILLIDNEEGLCRMMEQVLLDSGYLVRAYTSPVKAMEEFSAAAWDLVITDIKMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M G+ L+ +K +PV+I+TAY++VE +++AL+ GA D L KP + D L ++ A Sbjct: 60 GMTGLEVLQRVKEKCRDLPVIIITAYATVEMSIQALRKGAYDMLTKPFEPDELVFRVKNA 119 Query: 121 LAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + ++G S A++++L ++A VA + ++LI G+SGTGK Sbjct: 120 LQQAQLTEENRELRREIEEKLQFDNIIGSSGALRNVLDKVAKVAGRDTSILITGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+A+A+H S R E + +NC L ES+LESELFG+ KGAFTGA + R+G ADGG Sbjct: 180 ELIAQAVHIHSNRKEGRFMAVNCGGLPESILESELFGYRKGAFTGAAENRQGLLEAADGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDE+G++ +Q LLR +QE+E +RVG VDVR+I+AT+ DL V G FR Sbjct: 240 TLFLDEVGNLPMNVQKTLLRFLQEKEFRRVGDTNSTRVDVRIISATNADLKEGVRTGTFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYRLNVV + +P LR R +DIPLLA HF+ ++ AVK F AM +L ++WP Sbjct: 300 EDLYYRLNVVNLHLPPLRDRIDDIPLLAAHFIHLQNQKFGTAVKAFERDAMQILCTFEWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISEREL------------PLAIASTPIPLGQSQDIQPLV 403 GNIR+L N +E + + +YIS L P + + P+ + L Sbjct: 360 GNIRQLRNVIEACMAMEASDYISLDTLGQVIDLPEGRIVPATVQAGPVLSDDLPFTEALE 419 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E++++ L+K GG AAR+ G+ TL K+ R Sbjct: 420 RFERDLLRDLLKKHGGAVDSAAREAGMNVATLYRKIKR 457 >UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XQY9_9BACT Length = 502 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 190/495 (38%), Positives = 282/495 (56%), Gaps = 62/495 (12%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE--MD 63 +L+VDD+++ ++ +LR G+ V + + A+ + ++V+ D+ + + Sbjct: 2 AKVLLVDDELTMVQMVTEMLRAEGHEVFPYTNFKDAVAALEIHTPEIVVTDLYLDKTRAH 61 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ L++ +++ P V+++TA+ S+ETAVEA+K GA DYL KP D L +++AL++ Sbjct: 62 GLEILQKARSITPPASVIVITAFGSIETAVEAMKNGAYDYLEKPFKLDELNLCIQRALSY 121 Query: 124 THSIDAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 +I + ++G + MQ + I A +++T+LI G+SGTGKELV Sbjct: 122 NEAISENLYLKKQLKKKYQFSQIIGTAGPMQEVFKMIERTADTDSTILILGESGTGKELV 181 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARA+H +S R P + +NC+AL E+LLESELFGH KG+FTGA ++G F EADGGT+F Sbjct: 182 ARALHFNSKRQFAPFIPVNCSALPENLLESELFGHRKGSFTGALTDKKGLFQEADGGTIF 241 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG +S +Q RLLR +QEREV+RVG N ++VR++AAT+ L ++ G FR+DL Sbjct: 242 LDEIGSMSSTLQSRLLRVLQEREVRRVGENVPTYINVRVVAATNEPLEKKIKDGTFREDL 301 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQ-RFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 YYRLNV++I++PSLR+RR+DIPLLA HFL+ + R+ ++V+ T QA+DLL YDWPGN Sbjct: 302 YYRLNVISIQMPSLRERRDDIPLLAAHFLRNKINPRSGQSVQ-ITRQALDLLTTYDWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAI------------------ASTPIPLGQSQDI 399 +RELENA+ERA L I R+LP ++ A P P + Sbjct: 361 VRELENAIERAATLCEDNLIQIRDLPPSLVRSLGQPPSASTALSADVAQLPQPTTPPTSL 420 Query: 400 QP-----------------------------------LVEVEKEVILAALEKTGGNKTEA 424 P L E E + L GG+K + Sbjct: 421 VPIQTAIPGASAPLSVPNGTNPGATPTLHADLSLKDYLREQELAYLNRTLALFGGDKEKT 480 Query: 425 ARQLGITRKTLLAKL 439 A LGI+ TL KL Sbjct: 481 ALHLGISLATLYRKL 495 >UniRef50_B9XL82 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XL82_9BACT Length = 476 Score = 587 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 181/460 (39%), Positives = 265/460 (57%), Gaps = 24/460 (5%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +L+++DD L+ +L GY V+ G L FD+V+ D+++ +DG Sbjct: 4 KRTLLLIEDDAGAADALRRVLVNEGYTVSCEGRGDSGLGTAETINFDVVISDLKLPGLDG 63 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + +K + P +P+++MTA+ + ETA+EA K GA DYL+KP + + L +EKA+ + Sbjct: 64 LELVKRLHQAKPRLPIILMTAHGTTETAIEATKLGAYDYLLKPFEMEELLDLVEKAVESS 123 Query: 125 HSIDAETP--AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + +++ ++G S MQ + EI VA TVLI G++GTGKEL+ARAI Sbjct: 124 RLMSEPVKMGECVSARNAIIGNSRLMQGIYKEIGRVAAKPITVLIRGETGTGKELIARAI 183 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 + S RS P V +NCAA+ E+LLESELFGHE+GAFTGAD RR GRF +A GGTLFLDEI Sbjct: 184 YQHSDRSAAPFVAVNCAAIPETLLESELFGHERGAFTGADMRRIGRFEQASGGTLFLDEI 243 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+S Q +LLR +QE+ + R+G + I +D R+IAATHRDL ++ +FR+DLYYRL Sbjct: 244 GDMSLNTQAKLLRVLQEKYIHRLGGREPIPIDARVIAATHRDLEKALHDKQFREDLYYRL 303 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV I+ P+LR R EDIP L + +Q + P+A+ L + WPGN+RELE Sbjct: 304 NVAVIKTPALRHRSEDIPNLVRYLMQIYGADFDIESPSIQPEALQFLQNQPWPGNVRELE 363 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLG----------------------QSQDIQ 400 N V + ++L IS + +A + + Sbjct: 364 NVVRQVLLLAGRYTISIEHVREVVAKVGEAVAGGNQSIAAGIGTYLSRARRGEMEGVHAT 423 Query: 401 PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + EVE+E+ A+E GN+ +AAR LG++R T+ KL+ Sbjct: 424 VIEEVERELFGQAIELAQGNQAKAARWLGVSRITMREKLN 463 >UniRef50_C7LP79 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrionales RepID=C7LP79_DESBD Length = 458 Score = 587 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 161/441 (36%), Positives = 254/441 (57%), Gaps = 8/441 (1%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 ++I+ILVVDD+ + + L G + S ++A E + + +D+++ D+R+ + + Sbjct: 5 NSIEILVVDDESNIRKLFSRELASPGRTIHTVGSAKEAFEHLHKHYYDIIILDIRLPDAN 64 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ + ++ P + ++++T Y+ V+ AV+A+K GA DY+ KP D ++ +EKA Sbjct: 65 GLELMTKLLETVPNVAIILITGYADVDNAVQAMKNGAYDYITKPFSLDRMEQVIEKAYQR 124 Query: 124 THSIDAETPAVTASQFG----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 S+ +G S ++Q + I AP++ VL+ G+SGTGK + A Sbjct: 125 VRLQRENELLRHNSEHKSMPKFIGHSKSVQDVRYLIEKAAPTDVPVLLTGESGTGKNVAA 184 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 A+HA S R+++PL+ NC ++ LL SELFG+ KGAFTGAD+ +G A TLF Sbjct: 185 AALHAKSRRADQPLIIKNCGTFDKELLRSELFGYCKGAFTGADRSHDGLLSLAHKATLFF 244 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DE+G+++ +Q LLR ++ + +RVG + VDVR I AT++DL EV AGRF Y Sbjct: 245 DEVGELTLELQGALLRVLETQHFRRVGDKEERCVDVRFIFATNKDLEKEVAAGRFHDAFY 304 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 +R+NV IE+P LR+RREDIP L +FL A+ ++ +P+AM L+ WPGN+R Sbjct: 305 HRINVFNIELPPLRERREDIPALVEYFLVSLAKDGQEY--KISPRAMQQLMDNPWPGNVR 362 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGG 419 EL+N +ER ++L I+ + LP S P + + L E+E+ I + G Sbjct: 363 ELKNIIERGMILAENNIINVQALPFCQKSCQNP--REKGFSTLEELERSHISMVMHAVQG 420 Query: 420 NKTEAARQLGITRKTLLAKLS 440 NK+ AA+ LGI RKTL KL Sbjct: 421 NKSRAAQVLGIGRKTLYRKLE 441 >UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulator n=12 Tax=Proteobacteria RepID=Q0VSC9_ALCBS Length = 464 Score = 587 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 180/455 (39%), Positives = 270/455 (59%), Gaps = 19/455 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + +LVVDD+ +L L A+S A ++++E +DL L D+ + Sbjct: 1 MSAEAPHVLVVDDEADLRELLVITLGRMKLQATAADSLSTAKQRLKEAHYDLCLTDMNLG 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ L+ I P +P ++TAY S++TA +A+K GA D++ KP+ D L+ +E Sbjct: 61 DGTGLELLQFISQYCPTMPTAVITAYGSMKTATDAMKYGAYDFIAKPVALDRLRQLIEDG 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 L E + ++G +P+M L S++ +A S+A + I G+SG+GKE +AR Sbjct: 121 LGIN-----EVEEHHEEEDNLIGDAPSMVALKSQVRKLARSQAPIYISGESGSGKERIAR 175 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH R EKP V +NC A+ L+ESE FGH KGAFTGA + R+G F EADGGTLFLD Sbjct: 176 LIHTLGPRREKPFVAVNCGAIPSELMESEFFGHRKGAFTGAVEDRKGLFREADGGTLFLD 235 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ D+ MQV+LLRAIQE+ V+ VG + V++R++ ATH++L E+ GRFRQDL+Y Sbjct: 236 EVADLPLHMQVKLLRAIQEKSVRPVGEAKEFQVNLRILCATHKNLEDEMEEGRFRQDLFY 295 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ VP LR+RREDIP L H L R ++ + A++ + +Y +PGN+RE Sbjct: 296 RLNVIEAHVPPLRERREDIPKLVRHILDRLSQAWEIPPPSVSSDAVNAIGNYAFPGNVRE 355 Query: 361 LENAVERAVVLLTGEYISERELPL------------AIASTPIPLGQSQDIQP--LVEVE 406 LEN +ERA+ L G I L L + +++P P+ S+ L E+E Sbjct: 356 LENTLERALTLCDGNTILPEHLRLPSNRSGLASNRSSTSTSPPPIRPSEQSLEEFLQEIE 415 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 K+ IL AL+ T N+T AA++LG+T ++L +L + Sbjct: 416 KQEILKALDTTHWNRTAAAKKLGMTFRSLRYRLKK 450 >UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=Q3A2K8_PELCD Length = 451 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 188/446 (42%), Positives = 274/446 (61%), Gaps = 6/446 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILVVDD+ +L+ +L+ Y V+ A +G++AL ++ +++FD+VLCDV M Sbjct: 1 MGDKVKKILVVDDESCMRHMLRLVLQRAEYVVSEAANGQEALIRLEKEMFDVVLCDVCMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +DG LKE++A N + V++M+AY +++TAVE LK GA DY+ KP D + TL KA Sbjct: 61 TLDGPGFLKELRARNVSPTVIMMSAYGNLDTAVECLKEGAFDYISKPFKPDEVVLTLRKA 120 Query: 121 LAHTHSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + + TA MV M+ ++ + A + VL+ G++GTGK Sbjct: 121 EERLRLREENGLLRQELNRTAQSGQMVYACSGMEQAMTLVGRAAQVNSPVLVTGETGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARA+H R KP + +NC +N +++SELFGH +GAFTGA++ +G FV A+GG Sbjct: 181 ELVARALHQQGKRRGKPFIAINCGGMNAGVIDSELFGHIRGAFTGANRGHDGLFVAAEGG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++ +Q RLLRA+QE+EV+ VG+ DVR++AAT R+L E+NAGRFR Sbjct: 241 TLFLDEIGELPMTLQPRLLRALQEQEVRPVGAVNPRPTDVRIVAATARNLQEEINAGRFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 DL++RL V+ I +P LR+R+ DI LLA HFL R A R ++ TP+A++ L Y WP Sbjct: 301 SDLFFRLAVIEIHLPPLRERKGDIALLAEHFLSRLALREGRSCPSLTPEAVESLERYAWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI-QPLVEVEKEVILAAL 414 GN+REL N +E+ + + I LP I P GQ + + + +E E I AL Sbjct: 361 GNVRELANFMEKTAIFCRDDKICMEHLPWEIRRHPRDRGQDMSLKKAVSRIEPEYIRRAL 420 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLS 440 TGGN+T+AA+ L I+ + L K+ Sbjct: 421 SVTGGNRTKAAQLLDISLRNLHYKIR 446 >UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NQN0_9DELT Length = 480 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 187/457 (40%), Positives = 267/457 (58%), Gaps = 19/457 (4%) Query: 3 HDNIDILVVDDDISHCTILQALL-RGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 H+ +LVVDDD T+L LL R + V SG AL + D++ D+RM Sbjct: 10 HEKPLVLVVDDDAEMLTMLVRLLNRKFDCRVETVASGEAALACLDRNRPDVITTDLRMPG 69 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG++ L ++K +P I V++MT Y ++E AV +L+ GA D++ KP D + + +LE+ L Sbjct: 70 LDGMSLLTQVKEHHPEIAVIVMTGYGNIELAVRSLREGAYDFIEKPFDQERIVHSLERCL 129 Query: 122 AHTHSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + E + + G+ G S MQ + I VA + TVLI G+SGTGKE Sbjct: 130 ERVRLLQENRYLQERLSTQEAFCGLHGCSYRMQEVFDLIRKVANTNVTVLIRGESGTGKE 189 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L +A+H S R+ KPLVT+NC AL +LESELFG+ KGAFTGA + + G F+EADG T Sbjct: 190 LAVKALHTLSRRAAKPLVTVNCPALPAEILESELFGYVKGAFTGAAQDKSGYFLEADGST 249 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 L LDEIGD+ +Q +LLR +QE+EV +G + +VDVR++A+T++DL A++ G FR+ Sbjct: 250 LLLDEIGDMPLTLQTKLLRVLQEKEVTPLGQTKGRAVDVRVVASTNQDLEAKIAQGLFRE 309 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL YRLNVV I +PSL +R EDIPLLA HFLQ++A K F P L+ W G Sbjct: 310 DLLYRLNVVTITIPSLAERPEDIPLLARHFLQKYAAEYNKGDLTFAPATEQELLRRRWKG 369 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE------------ 404 NIREL+N V+R V+L +G I+ +L AS P ++ + L Sbjct: 370 NIRELQNTVKRVVLLTSGPQITPADLAEGGASPEEPPTGAEPMPTLTRLPYNEAKREVLT 429 Query: 405 -VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +E + AA+ ++GGN T AA+ G+ R+ L Sbjct: 430 SFSREYLTAAMHQSGGNVTAAAQSSGLGRQAFQRLLR 466 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 182/443 (41%), Positives = 266/443 (60%), Gaps = 7/443 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT +IL+VDD+ + L R G+ + ++ +ALE + + FDL+L DV M Sbjct: 1 MT-AKAEILIVDDEANTLASLSRAFRLAGHEATVCDNAVRALEIAKSKPFDLILSDVVMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 DG+ L+++K PV++M+ + +E AV+A + GALD+L KPL D L T+E A Sbjct: 60 GRDGLTLLEDLKTAGVQAPVVMMSGQAHIEMAVKATRLGALDFLEKPLSTDKLLLTVENA 119 Query: 121 LAHTHSIDAETPAVTA--SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 L ++ E + + + +V K AM+ ++++I VA SEA V I+G++GTGKEL Sbjct: 120 LKLKR-LETENRDLRSRVGKHEIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELA 178 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 AR +H S R P +TLNCAA+ L+ESELFGHEKG+FTGA +R G+F +A GTLF Sbjct: 179 ARTLHEKSPRKAGPFITLNCAAVPAELIESELFGHEKGSFTGAAQRHIGKFEQAHRGTLF 238 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIGD+ MQ +LLR ++E EV+RVG ++ I VDVR+I ATHR+L V G+FRQDL Sbjct: 239 LDEIGDMPLAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKFRQDL 298 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 ++R+ V + +P LR RREDIP+L HF + +N FT +A++ L Y WPGN+ Sbjct: 299 FHRVYVFPLILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVPFTAEAVEALQRYSWPGNV 358 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ---PLVEVEKEVILAALE 415 RE+ N VER ++L + + LA+ + + + E+EVILA L+ Sbjct: 359 REMRNVVERLLLLAVAGEVDRATVELALPEAQTATSDTGSGPLSSRVAQYEREVILAELQ 418 Query: 416 KTGGNKTEAARQLGITRKTLLAK 438 + + T A+ LG+ R L K Sbjct: 419 RQKHHITNTAKALGLERSHLYKK 441 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 190/459 (41%), Positives = 279/459 (60%), Gaps = 20/459 (4%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALAN----SGRQALEQVREQVFDLVLCDV 57 + + +L+VD+D +H + L GY+ +A+ SG++AL+ + + FD+++ ++ Sbjct: 11 SEVRVRVLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKALDLIEVENFDVIITEL 70 Query: 58 RMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATL 117 M E+DG+ L+ KA P V+++T ++S+++A+ A + GA YL KPLD L+ + Sbjct: 71 MMDEVDGLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAV 130 Query: 118 EKALAHTHSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 ++A + + G++G SP+M L+ ++ VAP+++TVLI G+SG Sbjct: 131 DRASSRIRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVAPTDSTVLIQGESG 190 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKELVARAIH +S R KP V LN +AL ES+LESELFGHE GAFTGA +R G+F A Sbjct: 191 TGKELVARAIHQNSERKNKPFVPLNISALPESILESELFGHEAGAFTGAATKRIGKFEYA 250 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 +GGTLFLDE+G++ Q++LLR ++ER + R+G+N I ++VRL+AAT+ DL + G Sbjct: 251 NGGTLFLDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDMIKKG 310 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR+DLY+RL+VV I +P L RR DIP L HFL++FAER ++ + T Q L+ Y Sbjct: 311 TFRKDLYFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRPIPTVTRQVQQALMAY 370 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-----------P 401 WPGNIREL N VE +VL + +LP I + + IQ Sbjct: 371 AWPGNIRELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHHEHSEVDLIQNPAGNDGLIGRS 430 Query: 402 LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L +VEK I ALE TGG + EAA LGI +TL K+ Sbjct: 431 LNDVEKYYIARALELTGGKRDEAANLLGIGERTLYRKIR 469 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 171/457 (37%), Positives = 265/457 (57%), Gaps = 20/457 (4%) Query: 5 NIDILVVDDDISHCTILQALLRGW-GYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 +L+ DD+ +L + V NS L + ++ F L++ D+++ + Sbjct: 11 TYRVLIADDEERMRRVLTMIFEEMKDVKVVAGNSFEDVLRYLDKERFHLLITDLKVPGSN 70 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 I ++ +K IP++++TAY SV A++ +K G DYL+ P D D L+ +++AL Sbjct: 71 SIDFIRAVKNKVADIPIIVLTAYGSVGFAIDIMKEGVFDYLVAPFDNDILELAVKRALKV 130 Query: 124 THSIDAETPAVTASQF-----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + A + ++G SP++ L + V +++TVL+ G+SGTGKELV Sbjct: 131 SSLTIENKNLRKALELQYNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELV 190 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 +RAIH +S R P V LNCAA+ E+LLESELFG+EKGAFTGA+K ++GRF A GGT F Sbjct: 191 SRAIHYNSDRKCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTFF 250 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEI ++S +Q ++LR I+ +E++R+G I VDVR+I AT+RDL V G+FR DL Sbjct: 251 LDEISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDL 310 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYR++V I +P+LR+R DI L+ HF+ F+ + K + + +LI + W GNI Sbjct: 311 YYRISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKTPIVLSSEVEKILIKHKWEGNI 370 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ--------------PLVE 404 REL+N +ERAV+L I LP +I P +++I L + Sbjct: 371 RELQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPPNGLSLDD 430 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +EK+++ ALE++ N T+AA+ LG+TR T +L + Sbjct: 431 LEKQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQK 467 >UniRef50_D2R521 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R521_9PLAN Length = 474 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 206/448 (45%), Positives = 287/448 (64%), Gaps = 13/448 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ + +LR G +V + S +AL+++ Q FDL+L D++M MDG+ Sbjct: 13 RILVVDDNARARQSMCDVLRHAGNDVQMCASAIEALQKLPSQEFDLILTDLQMPGMDGLQ 72 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 ++ ++ V+++TA++SV +AVEA++ GALDYL KP D D L+ +++ALA Sbjct: 73 FIRALQDRKIDSQVVMVTAFASVSSAVEAMRHGALDYLEKPFDADQLEQLVQRALARGRR 132 Query: 127 IDAETPAVTASQ---FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 A + ++SQ M+G S AMQ L S+IA+ AP+ TVLI G+SGTGKELVAR +H Sbjct: 133 GAAHSAVTSSSQPWHSMMIGTSSAMQRLRSQIAVAAPTGETVLISGESGTGKELVARCVH 192 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 A+S R+ K LV+LNC AL+ L+ESELFGHE+GAFT AD R GRF ADGGT+ LDEI Sbjct: 193 AASGRATKALVSLNCPALSPQLMESELFGHERGAFTSADAPRVGRFELADGGTILLDEIT 252 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 +I +Q +LLR +QE+ +RVGS++ + VDVR+IA T+R++ EV AGRFRQDL+YRL Sbjct: 253 EIELPLQAKLLRVLQEKSFERVGSSETLEVDVRVIATTNREIRQEVVAGRFRQDLFYRLA 312 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV + VP+LR RRED+PLL HFL A R ++ A DLL Y WPGN+RELEN Sbjct: 313 VVPLVVPALRDRREDVPLLVEHFLGAAAVRLERSPITVDRAASDLLCSYHWPGNVRELEN 372 Query: 364 AVERAVVLLTGEYISEREL------PLAIAST----PIPLGQSQDIQPLVEVEKEVILAA 413 + RA +L T E +S +L P A+ S + Q L ++E+ +I A Sbjct: 373 LMTRASILATSEKLSADDLRSWLLEPEAMHSAGSGNSSGESELQAGMKLEDMERRLIEAT 432 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 L+ G++ AA+ LGI +TL KL + Sbjct: 433 LDHYEGHRARAAQALGIGIRTLSNKLRQ 460 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 187/454 (41%), Positives = 266/454 (58%), Gaps = 18/454 (3%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + IL+VDD+ + IL+ L+ G+ A +GR+AL +++Q DLV+ D+ M Sbjct: 8 PNPESRILIVDDEGTSLLILENYLQHHGHVAICAANGREALALLKKQPVDLVISDLVMPG 67 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 M GI + K +P +P + TA S+E+AV A+K GA DYL KPLD +++AL Sbjct: 68 MGGIEFMDLAKERHPGLPFIFYTALGSIESAVSAIKQGAFDYLEKPLDPKTFDVVIQRAL 127 Query: 122 AHTHS-----IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSE-ATVLIHGDSGTGK 175 E A S +V +SPAM+ +L + VA S TV + G+SGTGK Sbjct: 128 EFARLSHENVQLREHFAELFSFQNIVTQSPAMRTVLELASRVAASPRTTVSLTGESGTGK 187 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E++ARAIH +S V +NCAA+ E+LLESELFGH +GAFTGA++ REG+F A GG Sbjct: 188 EVLARAIHFASGCLPSNFVAVNCAAIPEALLESELFGHVRGAFTGAERDREGKFSLARGG 247 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+ LDEIGD+ +Q +LLR ++ER ++VG N+ VD R+I AT+RDLA V GRFR Sbjct: 248 TVLLDEIGDMPLPLQAKLLRVLEERTFEKVGDNRPQPVDFRVIVATYRDLAQLVRKGRFR 307 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLY+R+NVV I +P LR+R EDIPLL FL+ F + KA+ G + +AMDLLI + WP Sbjct: 308 EDLYHRINVVPIAIPPLRERLEDIPLLVDFFLKLFRQHQGKALPGVSKKAMDLLIAHSWP 367 Query: 356 GNIRELENAVERAVVLLTGEYISERELP------------LAIASTPIPLGQSQDIQPLV 403 GN+REL N +E A ++++ E I L + + + + L Sbjct: 368 GNVRELRNVLEYAAIMVSDELIRPEHLRLSSSSPSASALPSSSGTVEFHISLPAEDVSLD 427 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLA 437 V V+ +AL++ GNK+ AA L + RK Sbjct: 428 AVVSRVLESALQRCHGNKSRAAALLKVNRKMFYR 461 >UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B9M1N5_GEOSF Length = 483 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 172/475 (36%), Positives = 265/475 (55%), Gaps = 38/475 (8%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +L++DDD +L+ + G V L + AL+ + + ++ + D+ M G Sbjct: 2 TAKLLILDDDPDILLMLKTVFHGEEMEVMLESESDAALKLILTERPNVAIFDISMPGKSG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA-- 122 L+E K ++P + +++ T + + + A+EA+K GA DY+ KP D + L+++++KAL Sbjct: 62 FQVLQEAKKIDPGLSIIMTTGHKTTQNAIEAMKFGAYDYVTKPFDTNKLRSSVQKALECN 121 Query: 123 -HTHSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + + + M+G S M + + VA S+ATVLI G+SGTGKE Sbjct: 122 LLNRKVRYTKDTNQLKLEEDADDIMIGSSAEMIEIWKMVGKVADSDATVLIQGESGTGKE 181 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+ARAI+ +S R +P + +NCAAL E+LLESELFGHEKGAFT A RR G+F + +GGT Sbjct: 182 LLARAIYDNSRRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHARRIGKFEQCNGGT 241 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIG++S Q +LLR ++ +E +RVG N I VDVR+IAAT+R L V FR Sbjct: 242 IFLDEIGEMSLANQGKLLRVLECQEFERVGGNDTIRVDVRIIAATNRSLVTSVKEKTFRM 301 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRL VV +P L+ R EDIPLL F+++F+ + K ++ P+ DLL+ + W G Sbjct: 302 DLFYRLRVVNFFLPPLKDRAEDIPLLIDLFVKKFSRKYGKTIRRVAPETTDLLLKHPWEG 361 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD-------------IQPLV 403 NIREL+N + A V + + +L + + D ++P+ Sbjct: 362 NIRELKNVINSATVFCKSDVLMPEDLESFLTAKAGFKEVDLDCAGDDYYEVFWKMLEPVF 421 Query: 404 E-----------------VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + +EK +I A+EK+ N+ AA+ LGI+R TL +L R Sbjct: 422 DGICLKNKGTIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLER 476 >UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XIA4_9BACT Length = 435 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 169/436 (38%), Positives = 263/436 (60%), Gaps = 8/436 (1%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +ILV+DDD +L +L+ Y V+ G E + ++VL D ++ + G Sbjct: 2 RANILVIDDDAEIRELLVQILQRSSYQVSQVKDGAGLKEAINRLQPEIVLLDFKLPDATG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L IK P V+++T +++ + AVEA+K GA + KP D ++L +++AL Sbjct: 62 LDLLPFIKKEWPESEVIMLTGHATYDVAVEAIKRGAFHFQEKPFDPESLLNLIKRALEIR 121 Query: 125 HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 +A S + + M++++ + VAPS+ ++LI G+SGTGKE++A IH+ Sbjct: 122 SLREA------VSTGNAIFQCDVMKNVVRTVRRVAPSDVSILITGESGTGKEVIADLIHS 175 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 SS R+ PL+ +NCAAL L+ESELFG KGAFTGA REG F +A+GGTL LDE+ + Sbjct: 176 SSHRASGPLIKINCAALPRELIESELFGSVKGAFTGAHSDREGLFRQAEGGTLLLDELSE 235 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + Q +LLR +QE+EV+ VG D R+IAAT+R + G+ R+DL+YR++ Sbjct: 236 MPIDTQSKLLRVLQEKEVRPVGGRTSYKTDCRIIAATNRKPEEAIRDGKMREDLFYRISA 295 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 V++ +P LR+RREDI LA FL+RF+ + + + GFTP+A + L +DWPGN+R+L+N Sbjct: 296 VSVHLPPLRERREDILPLATAFLKRFSAQANRDIAGFTPEAAERLRSFDWPGNVRQLQNE 355 Query: 365 VERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEA 424 V+RAV+L G+ + +L + + S + L VE+ I+ L++TGGNK E Sbjct: 356 VQRAVLLCEGKLVDAPDLSITAPANESTGDTSYTL--LEGVERNTIVQMLKETGGNKLET 413 Query: 425 ARQLGITRKTLLAKLS 440 A++LGI R+TL K+ Sbjct: 414 AKRLGIGRQTLYNKIK 429 >UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobacteria RepID=YFHA_ECO57 Length = 444 Score = 586 bits (1511), Expect = e-166, Method: Composition-based stats. Identities = 194/441 (43%), Positives = 273/441 (61%), Gaps = 7/441 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+H +L+VDDD +L L GY+V A SG + L + + DLV+ D+RM Sbjct: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L KP+D D L ++ A Sbjct: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 L + E + +V +SP M LL + LVA S+ +VLI+G SGTGKE+ A+ Sbjct: 121 LEQSAPATDERW-----REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +S R+ KP + +NC AL E LLESELFGH +GAFTGA REG F A+GGTLFLD Sbjct: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ +QV+LLR +QER+V+ +GSN+ I ++VR+I+ATHRDL + G FR+DLYY Sbjct: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV++++P+L +R EDIPLLA H L++ AER++ V+ F+ AM L+ WPGN+R+ Sbjct: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 L N +E+ V L + IS+ + A+ L + + + E + L+ T GN Sbjct: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARN--QFELNYLRKLLQITKGN 413 Query: 421 KTEAARQLGITRKTLLAKLSR 441 T AAR G R LSR Sbjct: 414 VTHAARMAGRNRTEFYKLLSR 434 >UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNC6_9FIRM Length = 465 Score = 586 bits (1511), Expect = e-166, Method: Composition-based stats. Identities = 177/453 (39%), Positives = 258/453 (56%), Gaps = 17/453 (3%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 T I +L+++D+ S ++L++ L GY + SG + L+ RE+ FD+ L D+R+ Sbjct: 5 TSAVIHVLIIEDEDSFRSLLESRLNRKGYCITATASGEEGLKAAREKSFDVALVDIRLPG 64 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 MDGI L+ ++ L VL+MT + ++ETA+EA++ GA YL KPLD L+ L KAL Sbjct: 65 MDGIQVLQALRQLQSPPEVLMMTGHGTIETAIEAMRQGAYHYLTKPLDLKELELVLAKAL 124 Query: 122 AHTHSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 D + +VG SPA+ ++ A + VLI G+SGTGKE Sbjct: 125 EKRRLADRVEGLNRALDRQTGEPEIVGNSPALLKVIDLTRKAASWDIPVLITGESGTGKE 184 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+A+A+H S R KP + +NC L +LLESELFGHEKGAF+GA R G A GT Sbjct: 185 LIAKALHHWSNRKGKPWIAINCGTLPSNLLESELFGHEKGAFSGAVASRVGLVEAAHEGT 244 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIG++ +Q +LLR ++ E +R+G+N++ VR++AAT+++L + AG+FR+ Sbjct: 245 LFLDEIGELEVGLQAKLLRFLESGEYRRIGNNRLFKSKVRVVAATNKNLEEAIAAGQFRE 304 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRL+ + + +P LR+RR DIPLL +FL+R R P + L Y +PG Sbjct: 305 DLYYRLSGMVLRLPPLRERRGDIPLLVQYFLKR---RYPHRQPPIDPSVWERLEAYRFPG 361 Query: 357 NIRELENAVERAVVLLTGEYISEREL------PLAIASTPIPLGQS---QDIQPLVEVEK 407 N+REL + V+RA +L G +S + + + P + PL EV + Sbjct: 362 NVRELAHMVDRACMLYDGGMLSWHHFVGFCDDGVDRSRSHKPADSAFVYPPGMPLEEVRR 421 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 ILA L GGNK AA +LGI +TL L Sbjct: 422 RHILATLAMVGGNKAVAAEKLGIGLRTLYRYLE 454 >UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/response regulator n=3 Tax=Deltaproteobacteria RepID=C0QA67_DESAH Length = 455 Score = 585 bits (1510), Expect = e-166, Method: Composition-based stats. Identities = 180/442 (40%), Positives = 258/442 (58%), Gaps = 10/442 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 I+ILVVDD+ S +L+ L + A +GR+AL +R+ VFD+++ D+ + + +GI Sbjct: 11 INILVVDDEKSIRRLLEKELASARRCITTAGNGREALIAIRKNVFDVIVLDISLPDANGI 70 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA--- 122 + + ++++T Y V+ AVEA+KTGA DY+ KP D L+ +EKA Sbjct: 71 ELMSRFHEEILGVQIILITGYGDVDDAVEAMKTGACDYITKPFDLGRLEQVIEKAYQIGS 130 Query: 123 -HTHSIDAETPAVTASQF--GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 H + F +VG S AM+ + I VAP+ VL+ G+SGTGK +VA Sbjct: 131 LHKKKFLKQQGLHKKKIFPDQIVGHSAAMEEVRFLIGKVAPTSVPVLVTGESGTGKNVVA 190 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 R +H S R E PL+T NCA L E L+ SELFG+ KGAFTGA+ R+G AD GTLFL Sbjct: 191 RQLHGLSLRGEYPLITKNCATLQEELIRSELFGYCKGAFTGAEDSRDGLLDLADKGTLFL 250 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++S +Q LLR ++ + + VG VD+R + AT+RDL EV GRF + L+ Sbjct: 251 DEIGELSVGVQASLLRVMENQTFRPVGDKHERKVDIRFVFATNRDLKEEVAKGRFSEALF 310 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 +RLNV AI++ LR+R+E+IP+L +FL + + + AM L+ YDWPGN+R Sbjct: 311 HRLNVFAIKILPLRKRKEEIPVLMEYFLGQIS--TGSPPCMVSKNAMKRLMAYDWPGNVR 368 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD--IQPLVEVEKEVILAALEKT 417 EL N +ER V+L I+ER LPL + T L E++K I+ L+ Sbjct: 369 ELYNVMERGVILADNNIITERCLPLELLETTEGTEDKNSTLFPTLEELDKNYIMKVLDHV 428 Query: 418 GGNKTEAARQLGITRKTLLAKL 439 GN+++AA LGI+RKTL KL Sbjct: 429 DGNRSKAAEILGISRKTLYRKL 450 >UniRef50_C7LX78 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX78_DESBD Length = 446 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 205/447 (45%), Positives = 278/447 (62%), Gaps = 16/447 (3%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 N ILVVDD+I + + +LR G++V A S ALE + + D+V+ DVRM G Sbjct: 2 NRSILVVDDEIRYRELYARVLRDAGFDVHEAGSAADALEFMDRRTPDMVVSDVRMPAESG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L+ ++A P +P L++TAY+ V AV+ALK GA+DYL KP+D D L A + L Sbjct: 62 LDLLRRVRAEKPELPFLLVTAYADVREAVDALKLGAVDYLAKPVDLDELLAAVRDTLGVG 121 Query: 125 HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 E PA AS G+V +S AM+ +L + VAPS+AT+L+ G+SG+GKE+VA+ IH Sbjct: 122 AGAGGEIPA--ASLTGIVAESLAMRSVLRDAYRVAPSDATILLTGESGSGKEIVAQFIHR 179 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 SARS KPLV +NCAA+ +LL SELFGHEKGAFTGA +R+G F EA GTLFLDEIGD Sbjct: 180 HSARSAKPLVPVNCAAIAPTLLASELFGHEKGAFTGAVTKRKGYFREAHEGTLFLDEIGD 239 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + +Q LLRA + + VGS++ +D RLIAAT+ DL +V GRFRQDLYYRLNV Sbjct: 240 MPLELQPSLLRATETGRITPVGSDKETVIDCRLIAATNHDLETDVAEGRFRQDLYYRLNV 299 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 + I++P LR+R EDIP LA FL + ++ + + AM LI + WPGN+REL NA Sbjct: 300 ITIDIPPLRERPEDIPPLARLFLNK----DKTEARRLSRAAMQTLISHPWPGNVRELANA 355 Query: 365 VERAVVLLTGEYISERELPLAIAST----------PIPLGQSQDIQPLVEVEKEVILAAL 414 + +L + I LP A+ + P+ + L + E E + AAL Sbjct: 356 MAHVRLLSQTDVILPEHLPPAVRKSAGKAAPESRIPVEQDAPAQTKTLEQHEIEAVTAAL 415 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 + T GN+T AA+ LGITR+ L+ KL R Sbjct: 416 KHTKGNRTHAAQLLGITRRGLIYKLKR 442 >UniRef50_B8FZ22 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZ22_DESHD Length = 494 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 172/488 (35%), Positives = 270/488 (55%), Gaps = 52/488 (10%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 + +L++DD+ +IL L GY + A + ++ + ++E +F+ VL D+R+ + DG Sbjct: 4 HQRVLILDDEEDLRSILAQRLGRRGYEIMEAATAQEGMALLQETIFEAVLLDIRLPDGDG 63 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L+ +K P + V+++T + ++E+A+EA+K GA DYL KP + L+ TL+KAL Sbjct: 64 LQLLQAMKKRQPDLQVIMLTGHGTLESAIEAMKAGAYDYLTKPCNLSELEITLQKALEQR 123 Query: 125 HSI-----DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + + ++ ++G S M+ L + +A ++ VL+ G+SGTGKEL A Sbjct: 124 KLMVENTGLRQVVHRQNAELLIIGDSEKMRSLKAMTRKIAQTDTPVLLQGESGTGKELFA 183 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RA+H S RS + + LN A++E+L+ESELFGHEKGAFTGA+ + G AD GTLFL Sbjct: 184 RALHVWSPRSGQAYIPLNAGAVHETLMESELFGHEKGAFTGANAVKLGLVEMADQGTLFL 243 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++ +QV+LLR ++ E +RVG N++ V+VR++ AT+R+L EV AGRFR+DLY Sbjct: 244 DEIGEMPLNLQVKLLRFMETGEFRRVGDNRLRRVNVRIVTATNRNLPEEVKAGRFRKDLY 303 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHF----LQRFAERNRKAVKG--------FTPQAMD 347 YRL + + +P LR+R+ DI LA HF L+R + + P+ + Sbjct: 304 YRLTGMVLHIPPLRERKGDILQLAEHFLRTGLRRHTLQGGNPAQDRSQSQTIHLAPETQE 363 Query: 348 LLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ------- 400 L+ YD+PGN+REL + +ER ++L G I R+L + + Sbjct: 364 ALLAYDFPGNVRELAHLMERGMILAEGPLIRIRDLWPEHGEGRSSIQTELPLPDEERAAE 423 Query: 401 ----------------------------PLVEVEKEVILAALEKTGGNKTEAARQLGITR 432 L E+EK+ ILA ++K GNK AAR LGI+ Sbjct: 424 MDEKSIKTERQGDQAEQENQGDVLAGYLTLAEIEKDYILATMKKVDGNKARAARLLGISV 483 Query: 433 KTLLAKLS 440 + L K+ Sbjct: 484 RNLYRKME 491 >UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGD9_RHOM4 Length = 472 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 171/459 (37%), Positives = 268/459 (58%), Gaps = 20/459 (4%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMA 60 D IL+VDD+ T+ + L G + + QA+E ++++ FDLV+ D +M Sbjct: 6 RDVPHILLVDDEHLLHTLFERLFTRHGLRLTSCYNALQAMEVLKKEADAFDLVITDFKMP 65 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +MDG+ L I+ +P + V+++TA+++V+ AV A++ GA+DY+ KP + L ++ A Sbjct: 66 DMDGLELLAYIRQEHPDLQVIMITAHANVQHAVRAMQNGAIDYIPKPFSTEELVERVQAA 125 Query: 121 LAHTHSIDAET--------PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 LA VG+ P ++ L + VA ++A V I G+SG Sbjct: 126 LARRREQQEARAKQPARTSQRRARPTIEYVGEHPMIRRLKEMLPRVAANKAPVFIQGESG 185 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKE++AR IH S R+E P V +NCA L L+ES LFGH KGAFTGA + G F A Sbjct: 186 TGKEILARLIHQMSDRAEGPFVAINCANLPRELVESHLFGHRKGAFTGAIEDMTGAFERA 245 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 +GGTL LDEI ++ +Q +LLR +QE+E+Q+VGS + +DVR+IA ++R+L+ + G Sbjct: 246 EGGTLLLDEITEVDLAIQAKLLRVLQEQEIQKVGSTEPRKIDVRVIATSNRNLSEAIAKG 305 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR+DLY+RL+V + VP LR+R D+PLL HF++++ E K + M+ + Y Sbjct: 306 EFREDLYHRLSVFPLSVPPLRERMSDVPLLVAHFIKKYCELYGLPPKKVSDALMERFMQY 365 Query: 353 DWPGNIRELENAVERAVVL-LTGEYISERELPLAIASTPIPLGQSQD---------IQPL 402 WPGN+R+LEN V+R V+L E I ++ + P Q+ +Q + Sbjct: 366 PWPGNVRQLENYVQRGVLLSAEREVIEVEDVFNDFFADAEPARQNASAEKEELLGRVQTI 425 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++E+E+IL AL++T N+ AA++LGI+ +T+ KL R Sbjct: 426 EDMEREMILRALKETNNNQQLAAQKLGISARTIRNKLKR 464 >UniRef50_A1VBP1 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfovibrionales RepID=A1VBP1_DESVV Length = 469 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 175/465 (37%), Positives = 261/465 (56%), Gaps = 29/465 (6%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + +L VDD+ S +L+ L V +A S RQA E++R +++V+ D+R+ + Sbjct: 2 RTSYSVLAVDDEPSIGKLLEKELSTPARAVHVAGSARQARERLRRATYEVVVLDIRLPDA 61 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DGI + E++ P + V+++T + +++ AVEA+K GA DY+ KP + L+ +E+A Sbjct: 62 DGIEFMVELRQRYPDMEVILITGHGNIDNAVEAMKLGAYDYITKPFNLTELEVVVERAYQ 121 Query: 123 HTHSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 + A G ++G S ++ + I VAP++ VLI G+SG GKE+ Sbjct: 122 RAFLRNENRALRHAHDRGRPGVTLIGNSQVIKEVRYLIEKVAPTDVPVLITGESGAGKEV 181 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 A AI + R++KP + NCA L + L SELFGH +G+FTGA + R+G A+ GTL Sbjct: 182 AAHAIQSLGTRADKPFIIKNCATLQKELARSELFGHVRGSFTGALESRDGLMAFANKGTL 241 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG++ +Q LLR ++ + +RVG S D+RLI AT+R LA EV AGRF + Sbjct: 242 FLDEIGELPMEVQASLLRVLENKTYRRVGEKDHRSCDLRLIFATNRTLAGEVEAGRFHEA 301 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LY+R+NV IE+P LR+R+EDIPLLA FL R N + + +AM L+ Y WPGN Sbjct: 302 LYHRINVFNIEMPPLRERKEDIPLLAEFFLARLG--NGRDDLRISDKAMSCLMQYAWPGN 359 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIA----------------------STPIPLGQ 395 +REL N +ER+++L I+E LP +A P +G+ Sbjct: 360 VRELRNVLERSIILAENNLITEHALPRDLAGFAGGSVGQSGVTGASGVCGTPGAPGAMGE 419 Query: 396 SQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 Q L +E+E I LE N++ AA LGI+RKTL K+ Sbjct: 420 MQGPLSLEAMEREHIARILEFYDNNRSLAATALGISRKTLYRKMR 464 >UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZTC1_OPITP Length = 486 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 179/396 (45%), Positives = 250/396 (63%), Gaps = 8/396 (2%) Query: 1 MTH--DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV-FDLVLCDV 57 M+ ILV+DDD L +L GY V A +G Q + V++ DLVL DV Sbjct: 1 MSDLAKPASILVIDDDAEIRYSLSRVLSSRGYTVLEAPNGEQGVVAVKKGPAPDLVLLDV 60 Query: 58 RMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATL 117 RM+ M GI L+ I++ NP V++MTA+ + +TA+EA+K GA DY++KP D + A Sbjct: 61 RMSGMGGIEALQLIRSANPKQLVILMTAFGTAQTAIEAMKYGAFDYVMKPFDPQKVLALA 120 Query: 118 EKALAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 + AL + A + + G+VG SP MQ + I V S+ TV+I G+SG Sbjct: 121 DAALKTRADLRAVSDYKPTINADDYREGIVGSSPVMQEVFKIIGQVTASDVTVMITGESG 180 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKELVAR+I S RS KP + +NCAA+ ++L+ESELFGHEKG+FTGA +R G+F Sbjct: 181 TGKELVARSIWKHSHRSSKPFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRLGKFELC 240 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 DGGT+FLDEIGD++ Q ++LR +Q E+QRVG + I VDVR++AAT++DL A V A Sbjct: 241 DGGTIFLDEIGDMALATQTKILRVLQAGEIQRVGGTETIRVDVRVLAATNKDLEAMVKAK 300 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR+DLYYRLNVV I++P LR+R EDIP + LQ ++ + +P+AM L + Sbjct: 301 TFREDLYYRLNVVRIKMPPLRERAEDIPQIVDFCLQNLVKQKKARATKVSPEAMAALTRH 360 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIAS 388 WPGN+RELEN + R+ V+ GE I E++LP + + Sbjct: 361 SWPGNVRELENVIYRSAVIAQGEAILEKDLPAELRT 396 >UniRef50_C4XL32 NtrC family two-component response regulator n=4 Tax=Proteobacteria RepID=C4XL32_DESMR Length = 452 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 203/446 (45%), Positives = 281/446 (63%), Gaps = 7/446 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 +LVVDD+ L +L GY+VA A SG A+ + ++ FDLVL D+RM + Sbjct: 1 MKGASVLVVDDEAIAVENLSHILAREGYDVAAAASGEAAVGLLADREFDLVLTDLRMKGL 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+A L E K L P V++MT +++V +AVEA++ GA YL KP ++AT+ +A+ Sbjct: 61 DGLAVLGEAKRLWPDTEVVVMTGHATVFSAVEAMRLGACHYLTKPYGLAEVRATVAEAMD 120 Query: 123 HTH-SIDAETPAVTASQFG----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 ++ + ++ G ++G+SPA+Q L+ I +AP+++TVLI G++GTGKEL Sbjct: 121 KRRLRLEVARLSRQVAELGRGPLIIGESPAIQALIDNIRHIAPTDSTVLILGETGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIHA+ + + +NC A E LL SELFGHEKGAF+GA ++G F A GTL Sbjct: 181 VARAIHAAGLQRANRFLAVNCGAFTEELLTSELFGHEKGAFSGAMSLKKGLFEVAGEGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG++SP MQVRLLR +QER RVG ++ I V R++AAT+RDL A+V G FR D Sbjct: 241 FLDEIGEMSPSMQVRLLRVLQERHFFRVGGDKEIPVVARILAATNRDLKADVERGLFRAD 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRLNV+ + VP L RR+DIPLLAG F R+A K V GF+ +A+ L+ Y++PGN Sbjct: 301 LYYRLNVITLRVPPLSARRQDIPLLAGAFAARYARGMDKPVTGFSAEAVRRLMAYEYPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLG--QSQDIQPLVEVEKEVILAALE 415 IRELEN V+RAV++ GE I +LP + L + ++ L E+E+ I L Sbjct: 361 IRELENIVQRAVIMARGEVIEAGDLPQDLHGDAPALARREGPELIALEELERRHIRDILT 420 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 GNKT AA LGI R +L K+ R Sbjct: 421 YCDGNKTRAAEILGIDRVSLWRKVKR 446 >UniRef50_B4CU93 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU93_9BACT Length = 465 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 187/452 (41%), Positives = 263/452 (58%), Gaps = 16/452 (3%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 I+VVDD+ L+ALL GY LA++ L VR+ DLVL D+ + + DG Sbjct: 7 RYKIVVVDDERPVLLTLEALLTRHGYEPQLAHTATAGLAIVRKSKPDLVLLDLGLPDADG 66 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + LKE+KA P +PV+I+TA S+ AVE++K GA ++ KP + L + + +A+ Sbjct: 67 LDVLKELKAELPQLPVIILTANDSLSNAVESIKQGAFHFISKPYAVEELLSLITRAIEQR 126 Query: 125 HSIDA------------ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 A Q V +S +M+++ + AP++A VL+ G+SG Sbjct: 127 QLQREAETLREEKQELSRRLAHAERQLAPVAQSRSMRNVRDLVERFAPTDANVLLLGESG 186 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 GKE+VA +H S R++ P+V LNCAA +++E ELFG+ KGAFTGA G +A Sbjct: 187 VGKEVVANQVHRLSRRADGPMVKLNCAAFPANMIEGELFGYVKGAFTGAVADFPGMIAQA 246 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 GGTLFLDEI ++ +Q R LR +QERE +R+GS + I + RL+AAT+R+ A V G Sbjct: 247 TGGTLFLDEIAEMPVELQTRFLRVLQEREFRRLGSTKTIPANFRLVAATNRNAAEAVRNG 306 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 RQDLYYRLN IE+P+LR+RREDIP L FL RFA++ K P+A D L++Y Sbjct: 307 TLRQDLYYRLNTFQIEIPALRERREDIPALVAVFLARFAKQMGKPEPTIAPEAFDRLLNY 366 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAI----ASTPIPLGQSQDIQPLVEVEKE 408 DWPGN+REL+NA+E +VVL I+ +ELP I A + L + E++ Sbjct: 367 DWPGNVRELQNAIEYSVVLADQALITVKELPREIQLPAALHEARAANAAASLNLEDQERQ 426 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 IL AL + GNK +AA LGI R TL K+ Sbjct: 427 AILQALTQAHGNKKKAAAILGIHRPTLYNKMK 458 >UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBQ0_9BACT Length = 458 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 184/451 (40%), Positives = 282/451 (62%), Gaps = 11/451 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ +L+V+D+ + LR G+ V +A+ G + + + D+++ D+ M Sbjct: 1 MSVCGRRLLIVEDEPLLRITMADALRKEGWTVDVADDGVKGAALFEQYLHDMIVSDLVMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE-- 118 +M G+ LK +KAL P V+I+TA+ +V AVEA++ GA D++ KP L L Sbjct: 61 QMGGMDLLKRVKALQPTTTVVIITAHGTVNRAVEAMREGAADFIAKPFSMAQLVVRLSNV 120 Query: 119 ---KALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + L + E S M+GKS AM+ + I LVA S+A+VL++G+SGTGK Sbjct: 121 CSTRLLREQNVRLQEQLEKRHSFANMIGKSKAMREVFDLIRLVADSDASVLVYGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E+VA A+H +S R K V ++CA+L ESL+ESELFG+E+GAFTGA++RR GRF A GG Sbjct: 181 EMVAAAVHYNSQRRAKSYVRVSCASLPESLIESELFGYERGAFTGANERRIGRFEAASGG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++ QV+LLRA+QER+++R+GSN+ + V+VR+++A+ R L E++AGRFR Sbjct: 241 TLFLDEIGELPLGFQVKLLRALQERQIERLGSNRPVDVNVRIVSASLRPLEDEIDAGRFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL++R+N VAI +P LR+R ED+P+LA FLQ FAE + ++GF+ + +++ + W Sbjct: 301 EDLFFRINTVAICLPPLRKRLEDVPILAASFLQEFAEERKLEIEGFSDEVLEVFDAHPWT 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI------QPLVEVEKEV 409 GN+REL N VERAV+ G + ++P+++ + + + E Sbjct: 361 GNVRELRNVVERAVLFCRGSKVEVDDIPVSMRGRSRETALEGRDKVMTMHEAVEKAEVRA 420 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 I AAL TGG + +AA LG++RKTL K+ Sbjct: 421 IRAALASTGGRRADAADLLGVSRKTLWEKIK 451 >UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLY7_DESAH Length = 463 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 170/455 (37%), Positives = 270/455 (59%), Gaps = 21/455 (4%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ + + + +L GY V + SGR+ L+++ FDLVL D++ ++GI Sbjct: 5 RILVVDDEPAIASGCKMILSEQGYRVEIEISGREGLKKLLSSPFDLVLLDIQFPHINGID 64 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LKE+K P + V+IMT +V AV+A+K+GA D++ KP + L ++ KAL Sbjct: 65 ILKEVKKQRPDLAVIIMTGNGTVNNAVDAMKSGAFDFITKPFSEEQLVCSVTKALESIKL 124 Query: 127 IDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + ++G++ ++ + +I V+P ++TVL+ G+SGTGKEL A+A Sbjct: 125 VKENNSLKKQLYDKFDFSNIIGETSEIKKIFEKIERVSPMDSTVLLDGESGTGKELFAKA 184 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R+ + ++C+ + +++ESELFGH KGAFTGA+ EG F A GTLFLDE Sbjct: 185 IHVRSTRASCRFLAVDCSTFSSTVMESELFGHVKGAFTGAETAHEGIFGAACDGTLFLDE 244 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 +G++ +Q +LLR ++ E + VGSNQI R++AAT+++L + G FR+DL+YR Sbjct: 245 VGNLDLDIQGKLLRVLETGEYKPVGSNQIKKSQARVVAATNKNLVQMIKEGTFREDLFYR 304 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV I++P LR+RR+D+P +A HFL+ F + K + GF+ A+ L+++DWPGN+R+L Sbjct: 305 LNVFPIKIPPLRERRDDVPKIAYHFLRLFCRKAHKKIHGFSDDALSALVNFDWPGNVRQL 364 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE---------------VE 406 +N VER V++ E + REL + P+ L + + L E VE Sbjct: 365 KNVVERLVIMCDKEQLDHRELMDNLEIKPVALVRDIPL-TLEELKRARKDFLEDSFRPVE 423 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + +L AL+ GN T+AA+ +G+ R A + + Sbjct: 424 RLFLLRALDDAKGNITQAAKAVGMQRSNFSAMMKK 458 >UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteobacteria RepID=B6BW54_9PROT Length = 465 Score = 583 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 173/461 (37%), Positives = 261/461 (56%), Gaps = 25/461 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M I ++DDD S +LQ L Y V + +A+ Q + DL++ D++M Sbjct: 1 MNSSKKKIWILDDDKSIRWVLQKALEKNNYTVLAFGNTNEAINQFNHDMPDLIVSDIKMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 G+ L+++K P IPV+IMTA+S +++AV++ GA +YL KP D DN + A Sbjct: 61 GESGLQFLEKVKGKFPNIPVIIMTAFSDLDSAVDSYSHGAYEYLPKPFDIDNAINVINSA 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 +A+ S ++G S AMQ + +I ++ S+A++LI G+SGTGKELVA+ Sbjct: 121 FKD----EADELNDIDSTNKIIGTSKAMQEVFKQIGKLSKSDASILITGESGTGKELVAK 176 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +S R +KP V LN AA+ + LLESELFG+EKGAFTGA+ ++G F EA GTLFLD Sbjct: 177 AIHDNSLRKDKPFVALNSAAIPKDLLESELFGYEKGAFTGANSSKKGYFEEAQDGTLFLD 236 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EI D+ +Q +LLR + + Q++GS+ +I +V++IAATH+DL ++N FR+DL++ Sbjct: 237 EIADMPIDLQSKLLRVLNDGSFQKLGSSSVIKANVKIIAATHQDLQDKINNQTFREDLFH 296 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ I++P LR+R DI LLA FL + A+ ++K + D +W GNIR+ Sbjct: 297 RLNVITIQLPPLRERENDITLLAKFFLNQSAQDLNTSIKYLNEETQDYFKKLNWTGNIRQ 356 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPI---PLGQSQDIQPL--------------- 402 L N V+ G+ I +LP + I P +D L Sbjct: 357 LRNICHWLTVMSPGKEIGVSDLPTELLKENIYNKPSFNWEDNLELVIQNDILNNETNIYD 416 Query: 403 ---VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 ++E +I +AL+ G + +AA LGI R T+ K+ Sbjct: 417 TYIEKLESILIKSALKHCSGKRIKAAHILGIGRNTITRKIK 457 >UniRef50_C0QK65 Two-component sensory box histidine kinase/response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QK65_DESAH Length = 445 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 190/446 (42%), Positives = 268/446 (60%), Gaps = 13/446 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL+VDD+ +L ++ + V A G +ALE V +D+V+ D++M +DG Sbjct: 2 ARILIVDDEEKIRYLLSIMIGRRAHLVDQAKDGAEALEMVSSTPYDMVITDMKMPRLDGT 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 LK+I L+ PV+ +TA+++VE+AVEA++ GA DYL KP + +++ T+E+ L + Sbjct: 62 GLLKQIMLLDIPCPVVFITAFATVESAVEAMRMGAADYLTKPFEEESVLLTVERTLKLSR 121 Query: 126 SIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + G M+ +S M ++ A V S++ +LI G+SGTGKEL+A+ Sbjct: 122 IMAENRDLKKQLDNGACASKMIFESKVMSDIIDLAAKVGKSDSAILISGESGTGKELLAK 181 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH S RS K V LNCAA++ +L+ESELFG+EKGAFTGA+KR G+F A GGTLFLD Sbjct: 182 YIHGQSLRSHKRFVPLNCAAISPNLVESELFGYEKGAFTGANKRSIGKFEYASGGTLFLD 241 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ Q +LLRA+QE+++QRVG N I VDVR++ ATH+DL V RFR+DLYY Sbjct: 242 EIGDLPLDAQAKLLRALQEKKIQRVGGNAEIPVDVRIVCATHQDLDGLVEKNRFRRDLYY 301 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 R+NV + P LR+R+EDIP LA HFL+ E T A LL Y WPGN+RE Sbjct: 302 RINVFPLSPPPLRERKEDIPALAVHFLK---ESFNGNDVVLTDGAKRLLAQYPWPGNVRE 358 Query: 361 LENAVERAVVLLTGEYISERELP-LAIASTPIPLGQSQDIQP----LVEVEKEVILAALE 415 L NA+ERAV+L I+ + L L A P + P L +E +++ AL+ Sbjct: 359 LANAIERAVILEENNAITAQTLSFLKKAHGPGENEGDYKLPPDGVCLQTLETDIVRQALD 418 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 G N+T AA+ LG+TR + R Sbjct: 419 MAGQNQTVAAKMLGLTRAKFRVLMKR 444 >UniRef50_Q30YU4 Two component transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=Q30YU4_DESDG Length = 465 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 172/458 (37%), Positives = 268/458 (58%), Gaps = 24/458 (5%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+++DD + +L LR GY V+ A+ + + R+ FDL+L DV + M G+ Sbjct: 4 HILLIEDDNAFQEMLSEALRSRGYAVSSASRAEEGISMARQHDFDLILTDVMLPGMSGVE 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 + +++ P +++MTAYS+ E A+EA++ GA D+ KP L + +AL Sbjct: 64 AIPQLREAAPGSDIIVMTAYSTRELALEAIRLGAYDFFSKPFSLKELDIVVRRALEKRRL 123 Query: 127 ID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 ET + ++G S M+ + + + VAP ++TVLI G+SGTGKELV+ Sbjct: 124 QKEVTTLRETLRHDSPVQRIIGDSAPMRAVKTLVEKVAPLDSTVLITGESGTGKELVSDT 183 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 + A S R+ P V +NCAA+ E L E+ELFGHEKGAFTGA + G+F A GGTL LDE Sbjct: 184 LRALSGRAGAPFVKVNCAAIPEHLFENELFGHEKGAFTGATSAQPGKFELAHGGTLLLDE 243 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ +Q +LLRA++E++++R+G + ++V+VR+IAAT+++L V FR+DLYYR Sbjct: 244 IGDMPAAIQPKLLRAVEEKQIERLGGRRPVAVNVRIIAATNQNLRELVARKAFREDLYYR 303 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L V I +P LR R+EDIP LA H L++ V G T A+ L+++ WPGN+R+L Sbjct: 304 LGVAVIMLPPLRDRKEDIPRLAEHILRKLGLTLGIPVHGITAAAVQALMNHHWPGNVRQL 363 Query: 362 ENAVERAVVLLTGEYISERELPLAI------------ASTPIPLGQSQDI------QPLV 403 N +ERA + G I+ +++ A+ A +P ++D + L Sbjct: 364 ANLLERAAISAQGR-ITAQDIAAALAVQNGTSPQPCTAQSPHDAPAAEDCLRMPLRETLH 422 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++E+ ++L AL + G++ AA LG+T K + AKL + Sbjct: 423 QMERNLLLEALRRAEGSQKNAAALLGLTPKNMWAKLQK 460 >UniRef50_A7HD97 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A7HD97_ANADF Length = 452 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 198/447 (44%), Positives = 271/447 (60%), Gaps = 13/447 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 ILVVDDD +L LL ++V AL + ++ D++L D+RM +DGI Sbjct: 2 ARILVVDDDPLAQRVLVRLLCPA-HDVHAYGDPAAALRHLADRGADVILTDLRMPGLDGI 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L + L+P + V ++T +SS+ +AVEA K GA DYL KP + D++ +E+A+ Sbjct: 61 ELLSRARELDPEVLVFVITGHSSIASAVEATKRGAEDYLSKPFEPDDVLLRVERAIERRR 120 Query: 126 SI-----DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E A + + P M L A +++TVL+ G++G GKE+VAR Sbjct: 121 LLARVRLQEEAAAPGGAHGVFLSPHPRMAALAEFARKAARTDSTVLVQGETGVGKEIVAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 +H S R+ + V++NC AL E+LLESELFGHE+GAFTGA RR G F ADGGT+ LD Sbjct: 181 LVHQWSPRAGRAFVSINCGALPETLLESELFGHERGAFTGAMARRAGYFEAADGGTILLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG SP QVRLLR +QER VQRVG I+VDVR+IAAT+ DL GRFR+DLYY Sbjct: 241 EIGATSPAFQVRLLRVLQERVVQRVGGTTPIAVDVRVIAATNEDLERAAGEGRFRKDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL VV + VP LR+RRED+ LA HFL+++ AV+G +P+ + L+ YD+PGN+RE Sbjct: 301 RLGVVTLVVPPLRERREDVGPLAEHFLRKY-RHVNPAVRGVSPEGLAKLVAYDYPGNVRE 359 Query: 361 LENAVERAVVLLTGEYISEREL----PLAIASTPIPLGQSQDIQPLV--EVEKEVILAAL 414 LEN VERA++L TGE +S L A+A + + +P+ + E+E I L Sbjct: 360 LENVVERAMILETGEALSPGSLLVGPGAALAGSRAERADAPQPEPVAIDDAEREHIRRVL 419 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 E+ GG + EAAR LGI + TL KL R Sbjct: 420 ERCGGRRGEAARLLGIDKSTLWRKLKR 446 >UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC n=2 Tax=Planctomycetaceae RepID=Q7UNH5_RHOBA Length = 485 Score = 582 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 184/472 (38%), Positives = 265/472 (56%), Gaps = 34/472 (7%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 IL+VDDD T L L G+ LA + A +Q+++ F+LV+ D+R+ Sbjct: 2 MPAASILLVDDDHHLATSLGEWLAEEGFETHLAGTLEDARQQLKQHAFELVITDLRLGGE 61 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ + ++K + PVL+MT Y++ TAVEA++ GA+D L KP+ D L +++A+ Sbjct: 62 DGMTLVSDVKKHHSDTPVLVMTGYATPNTAVEAVRAGAVDLLTKPVIDDELLLAIDRAM- 120 Query: 123 HTHSIDAETPAVTASQF------GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + I+AE + ++ M + I VA ++A++LI G++GTGK Sbjct: 121 NQRKIEAENETLRRQLDQRSGLENILSHDYRMMKIFDVIDSVADAKASILITGENGTGKS 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 ++ARAIH AR P + + C AL ++LLESELFGH GA+TGA+ R G+F ADGGT Sbjct: 181 MIARAIHNRCARRSGPFIEVACGALPDTLLESELFGHVAGAYTGANTDRRGKFELADGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEI +P MQV+LLR +QE + + +G + SVD R+I AT+ +L V G FRQ Sbjct: 241 LFLDEIATATPAMQVKLLRVLQELQFEPLGGMETRSVDTRVILATNENLDQAVADGSFRQ 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYR+NVV I +PSLR+R DIPLL HFL+ AE + + GF +AM L Y WPG Sbjct: 301 DLYYRINVVNIVLPSLRERTGDIPLLVDHFLREAAETAGRDIDGFDREAMKCLQSYAWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIAST--------------------------- 389 N+R+LEN VERAV+L T +++ +LP + T Sbjct: 361 NVRQLENVVERAVLLATDRVLTKDDLPPDVLGTSANQHASIGSVGHSPGVTASSGASSFN 420 Query: 390 PIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 P L + L E+E+IL +L + N+ A +L I R TL K+ R Sbjct: 421 PAVLDGCSLREALEGPEREIILHSLRRHNWNRAATADELEINRTTLYKKMKR 472 >UniRef50_C1A568 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A568_GEMAT Length = 526 Score = 582 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 184/477 (38%), Positives = 270/477 (56%), Gaps = 42/477 (8%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL VDD+++ IL+ L G+ A + +AL+ + DL++ D RM + G+ Sbjct: 41 ATILYVDDEVAVGLILEDTLAQAGHTPVGARNVPEALQVLERGGIDLIISDYRMPGLTGL 100 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 ++ + IP++++T ++S+E AV ++K GA+DY+ KP+ L+ +++AL Sbjct: 101 EFIQLLTREGYDIPLIMLTGHASIEHAVTSIKAGAIDYITKPVRPQQLELAVDQALEFVR 160 Query: 126 SIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ ++G SPA++ +L +++ AP+ ATVL+ G+SGTGKEL AR Sbjct: 161 LRRENETLRKEVMQFRNERQIIGDSPAIRRILQTVSMAAPTRATVLLQGESGTGKELFAR 220 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH S R +KP + LNCAAL E L+ES LFGHEKGAFTGA KR EG F A+ GTL LD Sbjct: 221 AIHDQSERRDKPFIKLNCAALPEGLVESALFGHEKGAFTGAIKRVEGAFERANRGTLLLD 280 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EI ++ +Q +LLR +QE+E +RVG I VDVR++A T+RDLA E + G FRQDLYY Sbjct: 281 EISEMRLDLQAKLLRVLQEQEFERVGGTSPIKVDVRIVATTNRDLAMEADHGTFRQDLYY 340 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL+ + + +P LR R ED+P+LA F R A K ++G + A++ L Y WPGNIRE Sbjct: 341 RLSTIPVLIPPLRDRAEDVPVLALRFAMRTAAEIGKKIEGLSQDALESLQQYPWPGNIRE 400 Query: 361 LENAVERAVVLLTGEYISEREL-----------------PLAIA---------------- 387 L++ +ERAV+L I L P AIA Sbjct: 401 LQHVIERAVILTPDPIIQPHCLEGTRFGLAHSLGAPNMRPRAIATPGAQPVLAVSGAAAA 460 Query: 388 ----STPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +TP G + + + E+ +I AL N+T+AA LGI+ +TL KL+ Sbjct: 461 PGSMNTPPNGGIALSSLNVADAERVLIQHALAAADNNRTKAADMLGISVRTLRNKLN 517 >UniRef50_A4CMC3 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=7 Tax=Bacteroidetes RepID=A4CMC3_9FLAO Length = 441 Score = 582 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 190/444 (42%), Positives = 269/444 (60%), Gaps = 7/444 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M +IL+VDDD+ +LQ L+ GY+ A S ++AL +++ DL++ D++M Sbjct: 1 MGLRKENILMVDDDVGILELLQRHLQSLGYHTFKALSVKEALFILKDSPIDLLITDIQMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 E+DG+ ++ + P +P L++T Y SV A E ++GA DYL KP + L+ + KA Sbjct: 61 EVDGLQLVRYAEEHYPGMPKLVITGYPSVAGAQETFRSGAADYLTKPFTREELKQAVRKA 120 Query: 121 LAH-THSIDAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 LA + DA T ++ G MVG S ++L+ I+ V + AT+L+HG+SGTGKE Sbjct: 121 LASDSRKPDAPTAPTLSTGAGYAEMVGDSQPFRNLVEIISRVRDNRATLLVHGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARA+H S + P V +NCAA+ E+L E+ELFG+ KGAFT A + R G F A+ GT Sbjct: 181 LVARAVHYSGKFARGPFVAVNCAAIPENLQEAELFGYVKGAFTDARETRTGFFQAAERGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIG S +Q +LLRA+QE+E+ +VGS + VD+R+IAAT+ +L + FR+ Sbjct: 241 LFLDEIGSASQAVQAKLLRALQEKEITKVGSRKTEKVDLRVIAATNSNLREAIAKKEFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRL VV IEVP LR R+ DIPLL FLQ++ R + P+A+ +L Y WPG Sbjct: 301 DLFYRLTVVEIEVPPLRDRKSDIPLLTTRFLQKYGVEYRDRLLKIDPEALQILQDYHWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK 416 NIRELEN ++RAV++ G + LP + L E+E++ + L Sbjct: 361 NIRELENVIQRAVIMSDG-TVGPEHLPGHLKFQID--FPQDGFASLREMERDYVRRVLAH 417 Query: 417 TGGNKTEAARQLGITRKTLLAKLS 440 TGGNKT AA L I RKTL KL Sbjct: 418 TGGNKTRAAEILQIDRKTLREKLK 441 >UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUI1_9GAMM Length = 466 Score = 582 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 183/447 (40%), Positives = 266/447 (59%), Gaps = 15/447 (3%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 D I ++DDD +L L G+ V ++ QA++ + ++ DLV+ D+RM EMD Sbjct: 9 DPGHICIIDDDADFLRLLGLWLESEGHKVQAFSTPVQAVKAMERELPDLVITDLRMPEMD 68 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ L+ ++ L+P +PV+++TA+ S+ AV A++ A YL KP + L++ + AL Sbjct: 69 GMEVLEAVQELDPELPVILLTAHGSIPNAVAAMRAQAFGYLGKPFSSEELESLVAAALRQ 128 Query: 124 THSIDAETPAVTASQFGMVG-----KSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + ET + A+ + G +SP M L+ E+ VA S+ +V + G+SG+GKE V Sbjct: 129 RQA-SRETSRLRATLKDLAGQMILHRSPVMAKLVDELTRVAHSQTSVFLTGESGSGKERV 187 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARAIHA+S R++ P V +NC A+ L ESELFGH KGAFTGA + G ADGGTLF Sbjct: 188 ARAIHAASPRAQGPFVAVNCGAIVADLAESELFGHVKGAFTGASQDHPGLIRAADGGTLF 247 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEI D+ +QV+LLR +QE ++ VGS + VD+R+I+ATH+D+ A +G FR+DL Sbjct: 248 LDEIADLPLSLQVKLLRVLQEGTLRPVGSREEYRVDIRVISATHQDICALTASGAFREDL 307 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYRL+V+ + VPSL +R EDI LLA HFL R R R+ ++GF+P+A+D LI WPGN+ Sbjct: 308 YYRLHVIPLRVPSLAERPEDILLLAQHFLDREIARLRRPIQGFSPEALDKLICRPWPGNV 367 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE----VEKEVILAAL 414 RELENAV A L +++ +P P G PL + E+ + L Sbjct: 368 RELENAVTLAAALTEKGWVAAETIPD-----PSRAGGRSAFPPLQDAKAAFERGYLENLL 422 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 T GN + AAR G R L + + Sbjct: 423 RATDGNISRAARIAGRHRTDLYKLMRK 449 >UniRef50_A4J6T1 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteria RepID=A4J6T1_DESRM Length = 512 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 187/502 (37%), Positives = 277/502 (55%), Gaps = 65/502 (12%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 + +L++DD+ S T LL+ GY V +A SG QA E V + +D+ + D+++ + D Sbjct: 3 NAPGVLIIDDEQSVGTFFSRLLKPKGYRVGVACSGVQAHELVAKDHYDVAMVDLKLPDAD 62 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNL-QATLEKALA 122 G++ L+ IK + P V+IMT YS+ TAV+A++ GA DY+ KP D L + +EKAL Sbjct: 63 GLSLLQHIKNVQPQCEVIIMTGYSTTRTAVKAIQYGAFDYIEKPFDDILLIEKLIEKALN 122 Query: 123 HTHS---IDAETPAVTASQFGM---VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + +D ET + + + VG++P M L+S +A + VLI G++GTGKE Sbjct: 123 FGMTDGQMDKETFSWSKVAEKIGFQVGRTPQMIKLVSIAERIAAKDINVLIQGETGTGKE 182 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 ++AR +HA+S RS+KP + +NC AL E+LLESELFGHE+G+FTGA +R+G F A+ GT Sbjct: 183 VLARFVHAASQRSDKPFLAINCGALPENLLESELFGHERGSFTGASVQRKGIFELANNGT 242 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIG+ S +QV+LLR ++ E RVG + + +VR+IAAT+ DL V +FR+ Sbjct: 243 LFLDEIGEASLAIQVKLLRVLETGEFLRVGGEKPVKTNVRIIAATNVDLEEAVKQKQFRE 302 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRL+V+ + +P L++R EDIP HF+ RF ERN V F P ++ +++Y WPG Sbjct: 303 DLFYRLDVIRLVLPPLKERLEDIPQFVEHFVNRFWERNDGPVPAFAPSCIEAMLNYHWPG 362 Query: 357 NIRELENAVERAVVLLTGEYISEREL----------------------PLAIASTPIPLG 394 NIREL N+VE+A+ L G + L P +T + Sbjct: 363 NIRELANSVEQALALCDGNAVLPEHLSGKINGQFLNDERTDKKALSYHPGLSDATSVLNV 422 Query: 395 QSQDIQPLVE------------------------------------VEKEVILAALEKTG 418 + +D+ L + +E I LE Sbjct: 423 KPEDLDQLDQQALLDLYHKVDGLYRAIHRTMGKKGITTVFPLTIQELEARAIEETLEFFN 482 Query: 419 GNKTEAARQLGITRKTLLAKLS 440 GN + +AR LGI R TL K Sbjct: 483 GNVSMSARALGIGRNTLYRKAK 504 >UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=Enterobacteriaceae RepID=D0ZDB7_EDWTE Length = 446 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 196/440 (44%), Positives = 269/440 (61%), Gaps = 6/440 (1%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + + +L+VDDD S +L L G+ V A SG++AL + DLV+ D+RM E Sbjct: 3 SAHSASLLLVDDDPSLLKLLGMRLSSEGFRVTTAASGQEALRLLARDPIDLVISDLRMDE 62 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 MDG+A EI+ P +PV+I+TA+ S+ AV A + G +L KP+D D L ++ AL Sbjct: 63 MDGLALFSEIQRRQPGLPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYRAIDDAL 122 Query: 122 AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 A + + A V +SP M LL + +VA S+ +VLI+G SGTGKEL+ARA Sbjct: 123 AQSMPQGGDDAWRQA----FVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKELLARA 178 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R+ K + +NC AL E LLESELFGH KGAFTGA REG F A GGTLFLDE Sbjct: 179 IHRASPRAGKAFIAINCGALPEQLLESELFGHAKGAFTGAVSSREGLFQAAAGGTLFLDE 238 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ +QV+LLR +QER+V+ +GSN+ + +DVR+I+ATHR+L + G FR+DL+YR Sbjct: 239 IGDMPLTLQVKLLRVLQERKVRPLGSNRDLDIDVRIISATHRNLPKAMELGEFREDLFYR 298 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV++ +P+L QR EDIPLLA H L++ AER++ V+ F+ AM L+ WPGN+R+L Sbjct: 299 LNVVSLRLPALNQRPEDIPLLAAHLLRQAAERHKPLVRSFSSGAMKALMSASWPGNVRQL 358 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNK 421 N +E+ V L T I E + A+ L + + E + L+ T GN Sbjct: 359 VNVIEQCVALTTAPVIGEALVEQALQGENTALPTFVEAR--HHFELHYLRKLLQITKGNV 416 Query: 422 TEAARQLGITRKTLLAKLSR 441 T AAR G R LSR Sbjct: 417 THAARMAGRNRTEFYKLLSR 436 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 183/456 (40%), Positives = 268/456 (58%), Gaps = 22/456 (4%) Query: 7 DILVVDDDISHCTILQALLR-GWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +LVV+D T LQ LL+ V A G L +R + + LV+ D+RM + G+ Sbjct: 9 RVLVVEDLEDTRTSLQELLQMSLKLEVDTAEDGAAGLAMLRAKPYSLVITDLRMPRVGGM 68 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 ++ I+A + V++ T +++ AVEA++ G D+L KP D +LQ +++AL Sbjct: 69 KLIETIQAEKIPVTVIVTTGNGNIKDAVEAMRMGVYDFLTKPPDPQHLQIIVQRALRDRA 128 Query: 126 SIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 D + ++ +SP M L I VA + +TVLI G++GTGKE +AR Sbjct: 129 LQDEVAALRRELGERHTFQNVLSRSPKMVDLFELIGHVAGTASTVLIRGETGTGKEQIAR 188 Query: 181 AIHASSAR-SEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 AIH +SA V +NC ALNE+LLESELFGHEKG++TGAD++R GRF A GTLFL Sbjct: 189 AIHQASANYRTGEFVAVNCGALNENLLESELFGHEKGSYTGADRKRIGRFELAHKGTLFL 248 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ MQV+LLR +QER +RVG + I +DVR++AATH+D+ V G+FR+DLY Sbjct: 249 DEIGDVPMSMQVKLLRVLQERRFERVGGAEPIEIDVRVVAATHQDMEKLVKDGKFREDLY 308 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVV I++P LR+R EDIP+L HF Q+F R + +P+A+DLL WPGN+R Sbjct: 309 YRLNVVRIDIPPLRERTEDIPVLVSHFCQKF-VRVGQKPPTISPEALDLLTKCPWPGNVR 367 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD----------IQPLVE----V 405 +LENA+ERA V I ++LP + P + L E Sbjct: 368 QLENAIERACVTARDGVIRTKDLPPEVGRRPESSAAGKHPFHVDLNRKLPDQLSELTAAF 427 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E+ I AL+++ G+ + A+ G++R+++ K+++ Sbjct: 428 EERYIRRALKRSRGHVGKCAKITGLSRRSITDKIAQ 463 >UniRef50_B8FJU0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJU0_DESAA Length = 443 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 180/441 (40%), Positives = 274/441 (62%), Gaps = 7/441 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL+V+ + L GY++ G A+E+++ ++L++ + + + Sbjct: 1 MEKDSILLVEHEYQDRLAWSDFLENRGYDIQAVGDGALAMERLKSNEYNLIIANDQAPGL 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G ++ ++ IPV+++++ +SV+ AVEA+K+GA D+L+KP+ L A + +AL Sbjct: 61 SGADI---VRKMDGKIPVILVSSNASVDQAVEAMKSGARDFLLKPVSAQILGAVVGRALG 117 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + S + A S ++ + M+ L + VA S+A VLI G+SGTGKEL AR I Sbjct: 118 VSKS-NGTPKAAGKSPVKIITQDDRMKRCLEVVDSVADSKAAVLISGESGTGKELFARQI 176 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H SS+R +K V +N AAL E+LLESELFGHEKGAFTGA R+ G+F A GGTL LDEI Sbjct: 177 HYSSSRKDKNFVAVNVAALPETLLESELFGHEKGAFTGAINRKIGKFELASGGTLLLDEI 236 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 ++ +Q +LLR +QE EV RVG ++VDVR++A T+RD+ + G+FR DLYYRL Sbjct: 237 TEMDIGLQAKLLRVLQESEVDRVGGTSPVNVDVRVVATTNRDVEQAIADGKFRSDLYYRL 296 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 V+ +++P LR+R D+ LLA HF++++ R+ K VKG T A + L++ DWPGN+RELE Sbjct: 297 AVIPLKLPPLRERSSDVILLAEHFIRKYNARDGKNVKGLTKNAQNTLLNLDWPGNVRELE 356 Query: 363 NAVERAVVLLTGEYISEREL---PLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGG 419 N +ERAV+L G+ I +L P + P L E+E+++I AL++T G Sbjct: 357 NTIERAVLLCKGDQIDHNDLFMEPPPPKALPRQDSIPSVSTTLREMEEQMIYQALDQTEG 416 Query: 420 NKTEAARQLGITRKTLLAKLS 440 N+T AA+ LGI+ +TL KL+ Sbjct: 417 NRTHAAQILGISVRTLRNKLN 437 >UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=Gammaproteobacteria RepID=Q5ZUN1_LEGPH Length = 453 Score = 581 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 178/442 (40%), Positives = 265/442 (59%), Gaps = 14/442 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+H +L+V+DD L + G+ A G++AL + +VL D+RM Sbjct: 17 MSH----VLIVEDDSVLREALAETMTISGHTYITAKDGKEALALLELHNPSVVLTDIRMD 72 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++DG L EI+ P +PV++MTAY SVE AV A++ GA+DYL KP L +++ Sbjct: 73 KLDGNQLLNEIQKKRPGLPVILMTAYGSVEDAVTAIRNGAVDYLQKPFSAQVLIEKIKQY 132 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + S + P + + P Q LL+ VA S+ V+I G+SGTGKE++A Sbjct: 133 IKTDLSEEDNDP---------IARDPKSQALLTMALRVAQSDVGVMISGESGTGKEVLAH 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH S RS++P + +NCAA+ E +LE+ LFG+EKGAFTGA K G+F +A GGTL LD Sbjct: 184 FIHDHSYRSKQPFIAINCAAIPEQMLEATLFGYEKGAFTGAYKSTPGKFEQAQGGTLLLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ ++S +Q +LLR +QE+EV+R+GSN+II++DVR+IA T+R L EV AGRFR+DLYY Sbjct: 244 EVSEMSLGLQAKLLRVLQEKEVERIGSNKIINLDVRIIATTNRQLKEEVQAGRFREDLYY 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV ++ LR+R DI LA + +++ + + V +P A ++ Y WPGN RE Sbjct: 304 RLNVFPLQWHPLRERTSDIIPLANYLIRKHCQHKQPIVPVISPDAQKAMLSYSWPGNARE 363 Query: 361 LENAVERAVVLLTGEYISERELPLAIAST-PIPLGQSQDIQPLVEVEKEVILAALEKTGG 419 L+N ++RA+VL T I E L + ++T P + L E E+I L + G Sbjct: 364 LDNVIQRALVLQTQGIIEEEHLQITNSTTMPSEEKTKGTSKNLQIHEYELIEKTLLENEG 423 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 N+ + A LG++ +TL KL++ Sbjct: 424 NRQKVAALLGVSERTLRYKLAK 445 >UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfohalobiaceae RepID=C0GVH4_9DELT Length = 470 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 185/461 (40%), Positives = 260/461 (56%), Gaps = 22/461 (4%) Query: 3 HDNIDILVVDDDISHCTILQALL--RGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 ++++DD+ L +L V +S LE ++ Q D++L D+RM Sbjct: 1 MSKQRLMIIDDEKDMLQGLSRILPQELENIQVETFSSALSGLESIKRQPVDVLLLDIRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDG+ L +K ++P I V+++TAY S+ETAVEA+K GA D++ KP + +L L KA Sbjct: 61 EMDGMEVLTAVKEIDPWITVVMITAYGSIETAVEAIKKGAYDFITKPFEIPDLVRVLNKA 120 Query: 121 LAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + I VG+SP M+ L I +A ++ TVLI G+SGTGK Sbjct: 121 LERSLLIRENMNLRKKVSEKEPFADFVGQSPPMRRLYDGIQALAGTDYTVLIRGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARA+H S RS + +VT+NC A+ E LLESELFGH+KGAFTGA++ G F+EAD Sbjct: 181 ELVARALHELSPRSSRRMVTVNCPAIPEHLLESELFGHKKGAFTGAEQNHTGMFLEADKS 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TL LDEIGD+ +Q +LLR +QEREV+ +GS++ VDVR+++ T++DL A + FR Sbjct: 241 TLLLDEIGDLPVSIQTKLLRVLQEREVRPLGSDKSRKVDVRILSCTNQDLEARIQDRSFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYRLNVV + PSL + EDIPLLA HFL+ +K F+ A+ ++H WP Sbjct: 301 EDLYYRLNVVTLRTPSLSEITEDIPLLADHFLRSVCNELGLPLKRFSVAAIQSMMHKSWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP-------------- 401 GN+REL+N V R + E I ++ +A S QD Sbjct: 361 GNVRELQNFVRRVALFSPEEEIGAADIRVAQDSLYGSAESRQDQDSNGKAVKPYQQAKEE 420 Query: 402 -LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L +E I L +T GN T A+ GI+R L + R Sbjct: 421 LLENFTREYITRLLGQTEGNVTRASDIAGISRTALQKIMRR 461 >UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Proteobacteria RepID=A0LDW4_MAGSM Length = 504 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 191/495 (38%), Positives = 267/495 (53%), Gaps = 57/495 (11%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ILV DDD + +L+ L GY V + + + + DL++ DV M Sbjct: 4 EAEQTILVADDDQAVRFVLEQALSRAGYKVHAFGNTQPLVNHFNQYGGDLIITDVVMPGG 63 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ ++ +KA P +P+++MTA S++ AV+A + GA +YL KP D + L +AL Sbjct: 64 SGLDMVQSLKATYPDLPIIVMTAQSTLRNAVQAFERGAFEYLAKPFDINRLVDLTRRALQ 123 Query: 123 HTHSIDAETPAVTASQF---------------GMVGKSPAMQHLLSEIALVAPSEATVLI 167 P Q G++G S AMQ L I ++ SE TVLI Sbjct: 124 KQEERVRNQPQTKTKQQAAAEDMDRQLEERFGGIIGSSRAMQALFHTIGRLSNSEMTVLI 183 Query: 168 HGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREG 227 HG+SGTGKELVARA+HA S R P +N AA+ L+ESELFGHEKGAFTGA RR G Sbjct: 184 HGESGTGKELVARAVHAYSPRRRGPFTAINMAAIPRDLIESELFGHEKGAFTGAVSRRPG 243 Query: 228 RFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAA 287 F +A+GGTLFLDEIGD+ Q RLLR +QE VGS I+ DVR+IAATH+DL Sbjct: 244 HFQKAEGGTLFLDEIGDMPMEAQTRLLRVLQEGTFTLVGSTDILRSDVRIIAATHQDLPT 303 Query: 288 EVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMD 347 ++ GRFR+DL+YRLNV+ + VP+LR R+EDIP+L+ +FL + ++ + A K T AM+ Sbjct: 304 AISEGRFREDLFYRLNVIPLHVPTLRSRKEDIPVLSQYFLAKTSKELKVATKRLTQSAME 363 Query: 348 LLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTP------IPLGQSQDIQP 401 L+ YDWPGN+RELEN + R VL+ + I ++ L + P + + Q+ + Sbjct: 364 KLVAYDWPGNVRELENLIRRLTVLIPEDEIRPEKIELYERTMPKLARNDLSGHEPQEERS 423 Query: 402 ------------------------------------LVEVEKEVILAALEKTGGNKTEAA 425 L ++E +I L +T GN+ +AA Sbjct: 424 TESNTSHSYEAILLQDLDTFFATMGGLETSGVYDMVLRKMEAVLIPRVLRQTRGNRVKAA 483 Query: 426 RQLGITRKTLLAKLS 440 + LGI R TL K+ Sbjct: 484 QILGINRNTLRKKMR 498 >UniRef50_C8X529 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrionales RepID=C8X529_DESRD Length = 464 Score = 580 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 172/444 (38%), Positives = 262/444 (59%), Gaps = 11/444 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +L+VDDD S +L+ L G+ A + QAL V+ DLVL DVR+ + +G+ Sbjct: 2 ATVLIVDDDASLRVVLEIALERRGHCPLTAENSEQALSAVQNNGVDLVLLDVRLGQENGV 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L+ ++ +PV+++TAY+ +AVEA+K GA DY+ KP D L +E++L + Sbjct: 62 DLLRLVRQNWADLPVIMITAYADSHSAVEAMKLGASDYIHKPFDVQELLLVVERSLKTSR 121 Query: 126 SIDAET---PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + + ++G+SP MQ + + VAP+ +L+ G+SGTGKELVARAI Sbjct: 122 LQEENRWLKKEIQGRYGEIIGESPCMQEVFHLVERVAPTVINILVTGESGTGKELVARAI 181 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 HA S R + PL+ +NC L E+L+ESELFG+ +GAFTGADK ++G AD GT FLDE+ Sbjct: 182 HAQSPRRDNPLMVINCGGLPENLVESELFGYRRGAFTGADKPKKGLLELADSGTAFLDEV 241 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 +++P QV+LLR +Q++ +G I+ DVR+IAAT+R + +V G FR DLYYRL Sbjct: 242 AELAPSTQVKLLRCVQDKSFIPLGGASEITTDVRIIAATNRQVDQDVAQGHFRDDLYYRL 301 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 + + I +P LR R D+ LLA HFL R ++++ +P+A L Y +PGN+RELE Sbjct: 302 SGMIIHLPPLRDRGSDVLLLAEHFLGRACREQKRSLLRLSPEARRKLQRYHFPGNVRELE 361 Query: 363 NAVERAVVLLTGEYISEREL-------PLAIASTPIPLGQSQDIQPLVEVEKEVILA-AL 414 N +ERAV L G I+ L + LG ++ ++ E+ IL A+ Sbjct: 362 NIIERAVALEQGNTITPSSLIIYEQDAAADPSGVNRVLGGELSLEDHLQSEEHKILKAAM 421 Query: 415 EKTGGNKTEAARQLGITRKTLLAK 438 + TGG+K++AA+ +G+ + + Sbjct: 422 DATGGHKSQAAQLVGLNFRQFRYR 445 >UniRef50_Q3A103 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A103_PELCD Length = 467 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 173/449 (38%), Positives = 267/449 (59%), Gaps = 15/449 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +IL+VD D + L+ +L G++V +G+ A E + + +LV+ D+++ + DG Sbjct: 16 NILIVDADQTLAKALEQMLSDQGHHVEKLCTGKAAFESLARKTPELVILDLQLPDTDGWH 75 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 +++ L A PV+++T E AV L G DYL KP+ + L A +++ L + Sbjct: 76 VFEQVSDLGDACPVVVVTGRELSEQAVTTLLNGPGDYLRKPISAEELAAVVQRTLENIR- 134 Query: 127 IDAETPAVTASQFG------MVGKSPAMQHLLSEIALVAPSEA-TVLIHGDSGTGKELVA 179 + E + + + G +V S M +L + +A S+A TV I G+SGTGKELVA Sbjct: 135 LRKELACLRSQKGGCYDQPSIVACSREMGQVLEMVDKIASSDAATVFIQGESGTGKELVA 194 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH SAR+ +P + +NCAA+ ++LLESEL GHEKGAFT A ++G F ADGGT+FL Sbjct: 195 RAIHYQSARASQPFMAINCAAVPQTLLESELMGHEKGAFTDAKNVKKGLFELADGGTVFL 254 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ P MQ +LLR ++ER +RVG + I VDVR+++AT+RDL + FR DLY Sbjct: 255 DEIGDMDPAMQAKLLRVLEERTFRRVGGTRDIKVDVRIVSATNRDLHKAMEDKSFRPDLY 314 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YR+ V+ +++P LR+RR+DI LA F+++F K V+G + A +L+ Y WPGNIR Sbjct: 315 YRIGVIPVQIPPLRERRDDILPLAEFFIRQFNREFNKKVRGISRMAQKILLEYSWPGNIR 374 Query: 360 ELENAVERAVVLLTGEYISERELPLAIAST-------PIPLGQSQDIQPLVEVEKEVILA 412 EL N +ER+V+L E + LP + + P+ + + ++E+E+I Sbjct: 375 ELRNVIERSVILECEEQLLVENLPRELVAQSVGDNIGPLNFQLPPEGVDIEDIERELIRQ 434 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ALE GN+T+AA+ L + ++ + Sbjct: 435 ALEMAQGNQTQAAKLLRLGIDAFRYRMKK 463 >UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q250F7_DESHY Length = 456 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 181/450 (40%), Positives = 275/450 (61%), Gaps = 17/450 (3%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + +L+V+D++ T+L+ L N+ LA++ QAL+ + + +D++L D R+ + +G+ Sbjct: 1 MKLLIVEDEVDFATLLKQRLTRKKINIDLAHTIEQALDWLGKVSYDVILLDQRLPDGEGL 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 + L +K +P + V+++T + S+ETA++++K GA DYL KP + L+ TL +A Sbjct: 61 SLLTHVKEADPFVEVVVLTGHGSLETAIQSIKQGAYDYLTKPCNTTKLEFTLTQAYEKKR 120 Query: 126 SIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E ++G+S ++ L+ + V SEAT+L+ G+SG+GKEL+AR Sbjct: 121 LAEQAAGLSEALRRQTGSEPIIGQSSEIKGLMQMVEKVKDSEATILVLGESGSGKELIAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 ++H SAR +KP LNCAAL L+ESELFGHEKGAFTGA + G ADGGTLFLD Sbjct: 181 SLHFWSARKDKPFQALNCAALPNQLVESELFGHEKGAFTGAAGVKMGLIEIADGGTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EI ++ +Q +LLR ++ E RVG+ + V +R++AAT++ L EV AGRFR+DLY+ Sbjct: 241 EIAEMDLDIQAKLLRLLEYGEYFRVGATRSRKVKLRVVAATNKRLEQEVAAGRFREDLYH 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV IEVP LR R+ DIPLLA + L + +N K +P+A+++L+ YD+PGN+RE Sbjct: 301 RLNVVQIEVPPLRNRKADIPLLADYLLAQKCPQNN--PKVLSPEALEVLLSYDFPGNVRE 358 Query: 361 LENAVERAVVLLTGEYISEREL--PLAIASTPIPLGQSQDIQP--------LVEVEKEVI 410 L N +ER +L G I L P TP+ ++ P L E++ I Sbjct: 359 LANILERGCLLSYGPTIEAEHLFQPQMGKRTPVSKKGLEEEAPRWGDTDLSLENCERQHI 418 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L L+ G NKT+AA++L I KTL K+ Sbjct: 419 LRVLKMAGENKTKAAQELKIGLKTLYRKVK 448 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 678 0.0 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 674 0.0 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 673 0.0 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 670 0.0 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 668 0.0 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 667 0.0 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 664 0.0 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 660 0.0 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 656 0.0 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 655 0.0 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 654 0.0 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 654 0.0 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 654 0.0 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 652 0.0 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 652 0.0 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 651 0.0 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 649 0.0 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 648 0.0 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 648 0.0 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 647 0.0 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 647 0.0 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 647 0.0 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 645 0.0 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 645 0.0 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 644 0.0 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 644 0.0 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 644 0.0 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 643 0.0 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 641 0.0 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 641 0.0 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 641 0.0 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 640 0.0 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 640 0.0 UniRef50_Q6ARB9 Probable two-component system response regulator... 639 0.0 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 639 0.0 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 639 0.0 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 639 0.0 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 639 0.0 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 638 0.0 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 638 0.0 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 638 0.0 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 638 0.0 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 637 0.0 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 637 0.0 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 637 0.0 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 635 0.0 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 635 0.0 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 634 e-180 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 634 e-180 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 633 e-180 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 633 e-180 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 632 e-180 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 631 e-179 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 631 e-179 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 629 e-179 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 629 e-179 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 628 e-178 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 628 e-178 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 627 e-178 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 627 e-178 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 627 e-178 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 626 e-178 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 626 e-178 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 624 e-177 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 624 e-177 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 624 e-177 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 624 e-177 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 624 e-177 UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bact... 624 e-177 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 622 e-177 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 621 e-176 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 621 e-176 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 621 e-176 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 621 e-176 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 621 e-176 UniRef50_A0LM32 Two component, sigma54 specific, transcriptional... 621 e-176 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 620 e-176 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 620 e-176 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 619 e-176 UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional... 618 e-175 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 618 e-175 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 618 e-175 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 618 e-175 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 617 e-175 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 617 e-175 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 617 e-175 UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein ... 617 e-175 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 617 e-175 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 617 e-175 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 616 e-175 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 616 e-175 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 616 e-175 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 616 e-175 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 616 e-175 UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptiona... 615 e-174 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 615 e-174 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 614 e-174 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 614 e-174 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 614 e-174 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 614 e-174 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 614 e-174 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 613 e-174 UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domain... 613 e-174 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 612 e-174 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 612 e-174 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 612 e-174 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 612 e-174 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 612 e-173 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 612 e-173 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 612 e-173 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 611 e-173 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 610 e-173 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 610 e-173 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 610 e-173 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 610 e-173 UniRef50_UPI00016C54BB two component, sigma54 specific, transcri... 610 e-173 UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio... 609 e-173 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 609 e-173 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 609 e-173 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 609 e-173 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 609 e-173 UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional... 608 e-172 UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pi... 608 e-172 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 608 e-172 UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC ... 608 e-172 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 607 e-172 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 607 e-172 UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator ... 607 e-172 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 605 e-172 UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thio... 605 e-172 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 605 e-171 UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional... 604 e-171 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 603 e-171 UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Breviba... 603 e-171 UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulato... 603 e-171 UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator ... 603 e-171 UniRef50_Q39U11 Two component, sigma54 specific, transcriptional... 603 e-171 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 602 e-171 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 602 e-171 UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulato... 602 e-170 UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional... 602 e-170 UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional... 602 e-170 UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LU... 601 e-170 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 601 e-170 UniRef50_C6BW44 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_D2QY56 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 601 e-170 UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional... 600 e-170 UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulato... 599 e-170 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 599 e-170 UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional... 598 e-169 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 598 e-169 UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulato... 598 e-169 UniRef50_A5G703 Two component, sigma-54 specific, transcriptiona... 597 e-169 UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional... 597 e-169 UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein Pi... 597 e-169 UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-... 597 e-169 UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_C6X591 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 596 e-169 UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria ... 596 e-169 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 596 e-169 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional... 596 e-169 UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional... 595 e-168 UniRef50_A0LL20 Two component, sigma54 specific, transcriptional... 595 e-168 UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional... 594 e-168 UniRef50_B9XL82 Two component, sigma54 specific, transcriptional... 593 e-168 UniRef50_A6KXD6 Two-component system response regulator n=40 Tax... 593 e-168 UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteob... 593 e-168 UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional... 592 e-168 UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC ... 592 e-168 UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional... 592 e-168 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 592 e-168 UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium auto... 592 e-167 UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n... 591 e-167 UniRef50_C8X529 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional... 591 e-167 UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncul... 591 e-167 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 591 e-167 UniRef50_C4XL32 NtrC family two-component response regulator n=4... 590 e-167 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 590 e-167 UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 T... 590 e-167 UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_B4CU93 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 590 e-167 UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional... 590 e-167 UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 T... 589 e-167 UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_C0QK65 Two-component sensory box histidine kinase/respo... 589 e-167 UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Se... 589 e-167 UniRef50_B3QW87 Two component, sigma54 specific, transcriptional... 589 e-167 UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteoba... 589 e-167 UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opit... 589 e-166 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 589 e-166 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 589 e-166 UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional... 588 e-166 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 588 e-166 UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=A... 588 e-166 UniRef50_C7LP79 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_C1A568 Putative NtrC family two-component response regu... 587 e-166 UniRef50_A1VBP1 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_Q30YU4 Two component transcriptional regulator, Fis fam... 587 e-166 UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/res... 587 e-166 UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-... 587 e-166 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_B8FZ22 Two component, sigma54 specific, transcriptional... 587 e-166 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_Q1Q480 Putative uncharacterized protein n=1 Tax=Candida... 586 e-166 UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desu... 586 e-166 UniRef50_Q7UVC1 Acetoacetate metabolism regulatory protein atoC ... 586 e-166 UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfi... 586 e-166 UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulato... 586 e-166 UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional... 586 e-166 UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional... 585 e-166 UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobac... 585 e-166 UniRef50_A3EPR9 Putative two component, sigma54 specific, transc... 585 e-165 UniRef50_A0L4H3 Two component, sigma54 specific, transcriptional... 585 e-165 UniRef50_Q027R3 Two component, sigma54 specific, transcriptional... 585 e-165 UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacter... 585 e-165 UniRef50_C5CF13 Two component, sigma54 specific, transcriptional... 585 e-165 UniRef50_B3E861 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_D2R521 Two component, sigma54 specific, transcriptional... 584 e-165 UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=... 584 e-165 UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing pr... 584 e-165 UniRef50_A7HD97 Two component, sigma54 specific, transcriptional... 583 e-165 UniRef50_C7LX78 Two component, sigma54 specific, transcriptional... 582 e-165 UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=G... 582 e-164 UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, N... 581 e-164 UniRef50_C1DWP8 Acetoacetate metabolism regulatory protein AtoC ... 581 e-164 Sequences not found previously or not previously below threshold: >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 389/441 (88%), Positives = 410/441 (92%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT + IDILVVDDD+SHCTILQALLRGWGYNVALA SGR+ALE+ VFDLVLCDVRMA Sbjct: 1 MTGEKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEKASGHVFDLVLCDVRMA 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGI TL+EIKALNPAIPVLIMTA+SSVETAVEALKTGALDYLIKPLDFD LQ TLEK+ Sbjct: 61 EMDGIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLEKS 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 LAH + E P+V+ASQ GMVGKSPAMQ LLSEIA+VAPS+ATVLIHGDSGTGKELVAR Sbjct: 121 LAHAQEVAGELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+HASSARS+KPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD Sbjct: 181 ALHASSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGDISP+MQVRLLRAIQEREVQRVGSNQ +SVDVRLIAATHRDLA E +AGRFRQDLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV IE PSLRQRREDIPLLA HFLQRFA RNRKAVKGFTPQAMDLLIHY WPGNIRE Sbjct: 301 RLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYAWPGNIRE 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 LENA+ERAVVLLTGEYISERELPLAIA+ +PL +Q IQPLVEVEKEVILAALEKTGGN Sbjct: 361 LENAIERAVVLLTGEYISERELPLAIANQAMPLMPAQAIQPLVEVEKEVILAALEKTGGN 420 Query: 421 KTEAARQLGITRKTLLAKLSR 441 KTEAARQLGITRKTLLAKLSR Sbjct: 421 KTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 674 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 392/441 (88%), Positives = 413/441 (93%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M IDILVVDDD+SHCTILQALLRGWGYNVALA SG AL QVRE+VFDLVLCDVRMA Sbjct: 1 MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQVREKVFDLVLCDVRMA 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGIATLKEIKALNPAIP+LIMTA+SSVETAVEALK GALDYLIKPLDFD LQ TLEKA Sbjct: 61 EMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALDYLIKPLDFDRLQETLEKA 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 LAHT AE P+ +A+QFGM+G SPAMQHLL+EIA+VAPS+ATVLIHGDSGTGKELVAR Sbjct: 121 LAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+HA SARS+KPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD Sbjct: 181 ALHACSARSDKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGDISP+MQVRLLRAIQEREVQRVGSNQ ISVDV LIAATHRDLA EV+AGRFRQDLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVVAIE+PSLRQRREDIPLLA HFL+RFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE Sbjct: 301 RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 LENA+ERAVVLLTGEYISERELPLAIA+TPI S +IQPLV+VEKEVILAALEKTGGN Sbjct: 361 LENAIERAVVLLTGEYISERELPLAIAATPIKAENSAEIQPLVDVEKEVILAALEKTGGN 420 Query: 421 KTEAARQLGITRKTLLAKLSR 441 KTEAARQLGITRKTLLAKLSR Sbjct: 421 KTEAARQLGITRKTLLAKLSR 441 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 673 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 196/449 (43%), Positives = 275/449 (61%), Gaps = 14/449 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDDD L +L GY A G +A+ ++ +Q FD+V+ D+ M MDG+ Sbjct: 9 KILLVDDDPGVLATLTEVLSDAGYRTHTATDGAEAVAELDKQFFDVVVTDLNMPGMDGMG 68 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK ++ + L++T + S+ +VEA+K GA DY+ KP+ FD L ++ A+ Sbjct: 69 VLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELLHSVSTAIKFKRL 128 Query: 127 IDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 T VG SP +Q + I VA +++TVLI G+SGTGKEL+ARA Sbjct: 129 ERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGESGTGKELIARA 188 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R + P+V +NC A+ E LLESELFGHEKGAFTGA K R GRF A+GGT+FLDE Sbjct: 189 IHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEVANGGTIFLDE 248 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+SP +QV+LLR IQE+ +R+GS + + VD+R++AAT++DL V FR+DLYYR Sbjct: 249 IGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEKKEFREDLYYR 308 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV+ IEVP LR R+ DIPLL F+ + A + VK + AM+ L+ + WPGN+REL Sbjct: 309 LNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMGHHWPGNVREL 368 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP---------LVEVEKEVILA 412 EN VER ++L +G+ I + +LP I ++ P + E EK +I+ Sbjct: 369 ENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGGIRFDHAVEEYEKNLIVQ 428 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ALE+ KT+AA+ L I R TL+ K+ R Sbjct: 429 ALEEANWVKTQAAKLLHINRTTLVEKMKR 457 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 368/443 (83%), Positives = 399/443 (90%), Gaps = 2/443 (0%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + +DILVVDDDISHCTILQALLRGWGY VALAN+G QALE+VRE+VFDLVLCD+RMA Sbjct: 1 MSGEQVDILVVDDDISHCTILQALLRGWGYRVALANNGLQALEKVREKVFDLVLCDIRMA 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGI TLKEIK NP+IPVLIMTAYSSV+TAVEALK+GALDYLIKPLDFD LQ TL +A Sbjct: 61 EMDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGALDYLIKPLDFDKLQLTLSEA 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 LAHT ++ A+QFGMVG SPAM+ LL+ I LVAPS+ATVLIHG+SGTGKELVAR Sbjct: 121 LAHTRLSESPVTETPAAQFGMVGDSPAMRALLNNITLVAPSDATVLIHGESGTGKELVAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+HASSARS +PLV LNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD Sbjct: 181 ALHASSARSRRPLVILNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGDISP+MQVRLLRAIQEREVQRVGSNQ +SVDVRLIAATHRDLA EV+AGRFRQDLYY Sbjct: 241 EIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEEVSAGRFRQDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV I++P LR RREDIP LA +FLQR+AERNRKAV+GFTPQAMDLLIHY WPGNIRE Sbjct: 301 RLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDLLIHYAWPGNIRE 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD--IQPLVEVEKEVILAALEKTG 418 LENAVERAVVLLTGEYISERELPLAI TP+ D IQPLVEVEKE ILAALE+TG Sbjct: 361 LENAVERAVVLLTGEYISERELPLAITGTPVADAPHGDDSIQPLVEVEKEAILAALERTG 420 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 GNKTEAAR+LGITRKTLLAKLSR Sbjct: 421 GNKTEAARRLGITRKTLLAKLSR 443 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 206/447 (46%), Positives = 283/447 (63%), Gaps = 15/447 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILV+DD+ C L+ L GY V + G+ L+ +R++ LV+ D++M EMDG+ Sbjct: 6 KILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGLE 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L + K L P +P++++TA+ +++TA+EA+K GA DY+ KP D D L+ + +AL H Sbjct: 66 VLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQALMVNHL 125 Query: 127 IDAETPAVTA---SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + T + +VG S A+ + I VA S ATVL+ G+SGTGKE+ A +IH Sbjct: 126 QEEVTFLRSELNKKYGQIVGNSQAIHDVCGLIEKVADSNATVLVTGESGTGKEITALSIH 185 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S+R +KP V +NCAAL ESLLESELFGHEKGAFTGA R+ GRF A+ GTLFLDEI Sbjct: 186 QLSSRRDKPFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELANQGTLFLDEIT 245 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 ++ MQV+LLR +QE+E +RVG I +DVR+IAAT+RD + G FR+DL+YRLN Sbjct: 246 EMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGTFREDLFYRLN 305 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 V+ I +P LR+R EDIPLLA HF+++F + +P+AM LLI Y+WPGNIREL+N Sbjct: 306 VLPIHLPPLRERTEDIPLLAMHFIKKFNP---SQEQRMSPEAMGLLISYEWPGNIRELQN 362 Query: 364 AVERAVVLLTGEYISERELPLAIASTPIPLGQ---------SQDIQPLVEVEKEVILAAL 414 +ER+++L G I LP I + D EVEKE+IL AL Sbjct: 363 VIERSIILAQGNEIKPHHLPKEIQKLDEVKNETTHGLIINFPDDGISFDEVEKELILKAL 422 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 EK+ GN+T AA+ LGITR LL + + Sbjct: 423 EKSNGNQTRAAQLLGITRSALLYRAQK 449 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 667 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 198/445 (44%), Positives = 293/445 (65%), Gaps = 7/445 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ IL++DD+ + +L A L GY V A GR L ++E +D+++ D+++ Sbjct: 1 MS-TKKRILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLITDLKLP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++ G+ L+++KA P +PV+++TAY S+ AV+A+K GA +YL KP+D D L ++ Sbjct: 60 DITGLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNV 119 Query: 121 LAHTHSIDAETPAVTASQF-----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + ++ + MVGKS AMQ L + I VA EA VL+ G++GTGK Sbjct: 120 FERSQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVAQYEANVLVTGETGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVAR IH + P V ++CAA+ E+LLESELFGH +GAFTGA ++++G+ A GG Sbjct: 180 ELVARGIHYAGQEENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAEQKKGQIELAHGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++ +Q + LR +QE+E+ R+G + VDVR+IAAT+RDL AE+ AG++R Sbjct: 240 TLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNRDLEAEIAAGQWR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV++IE+P LR+RR+DIP L HFL ++ +N KA++G T + M++ + YDWP Sbjct: 300 EDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTGEVMEVFMAYDWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALE 415 GN+RELEN +ERAVVL G+ I+ LP + P S D L+E+EK +I+ LE Sbjct: 360 GNVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAP-APSTDGVNLMEMEKRLIVQTLE 418 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 KT N++ AAR+LGI+RK L K+ Sbjct: 419 KTEQNQSAAARELGISRKQLRTKMK 443 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 664 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 211/444 (47%), Positives = 288/444 (64%), Gaps = 11/444 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD+ S C L+ +L GY+V A SGR+ALE+V VL D+RM EMDGI Sbjct: 5 VLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEMDGIKV 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH-S 126 L+ ++ +P +PV++MTAYS +T + A++ GA +Y++KP++ D L +TLEKA T Sbjct: 65 LQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKATTVTEPL 124 Query: 127 IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 + + ++G SPAMQ + I +A S+ TVLI G+SGTGKELVA AIH +S Sbjct: 125 VTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIADSDVTVLIQGESGTGKELVAEAIHYNS 184 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 R KP V ++C A+ E+LLESELFGHEKGAFTGA R+ G+F ADGGT+FLDEIGDIS Sbjct: 185 PRQGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELADGGTVFLDEIGDIS 244 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 P +Q +LLR +QE+ +RVG + VDVR+IAAT++DL V +G FR+DLYYRLNVV Sbjct: 245 PALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGLFREDLYYRLNVVE 304 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 I++P LR+R+EDI LL +F+ + K V G T D+L+ Y+WPGN+REL N E Sbjct: 305 IKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVADILLQYNWPGNVRELRNVCE 364 Query: 367 RAVVLLTGEYISERELPLAI------ASTPIPLGQSQDIQPLV----EVEKEVILAALEK 416 RAV++ G I+ LP + + + + + PL E+E+ IL ALE+ Sbjct: 365 RAVLMARGNVITPESLPEYLLRAVRGRTEAWHPAEDRGVLPLKEMVAEMERSAILRALEE 424 Query: 417 TGGNKTEAARQLGITRKTLLAKLS 440 GNKT AR LG++R TL AK+ Sbjct: 425 YRGNKTAVARALGMSRTTLYAKMK 448 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 200/435 (45%), Positives = 284/435 (65%), Gaps = 1/435 (0%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +IL +DD+IS + A+LR GY V + + + +E ++ + +L D R+ MDGI Sbjct: 2 ANILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLPGMDGI 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L+ +K +IP +++TAY ++E AVEA+K GA YLIKP+D + L +++A+ + Sbjct: 62 DLLRWLKHCEMSIPTVMLTAYGTIEKAVEAMKLGAYHYLIKPVDTELLLNVIKEAIEKSK 121 Query: 126 SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 I + ++GKS +Q + + +VA S A VLI G+SGTGKELVARAIH + Sbjct: 122 GIQK-LEKIETPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKN 180 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S R KP + ++C + E+LLESELFGHEKGAFTGA +R+ G A+ GT+FLDEIG++ Sbjct: 181 SLRKSKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGEL 240 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 ++Q +LLR +QE+E+QR+GS Q I VDVR+I+AT++DL + G FR+DLY+RLNVV Sbjct: 241 PMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVV 300 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 I +P LR+R+EDIPLL HFL +F++ N K + P+ M+ LI+Y WPGNIREL N + Sbjct: 301 RINLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELANVI 360 Query: 366 ERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAA 425 ERAVVL IS + LP I ++ L+EVEK +IL AL TG N+T+AA Sbjct: 361 ERAVVLSPSGLISIKHLPRRIQENTGWTIIKENTFNLLEVEKALILKALNSTGWNQTKAA 420 Query: 426 RQLGITRKTLLAKLS 440 LGI+RK L K+ Sbjct: 421 EILGISRKQLRTKMK 435 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 656 bits (1695), Expect = 0.0, Method: Composition-based stats. Identities = 199/447 (44%), Positives = 287/447 (64%), Gaps = 9/447 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 +LVVDD+ S L +L Y VA A +G Q +++ + D+++ D+RM E Sbjct: 1 MVKKRVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEK 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG L++IK+ IPV++MTA+ + E A++A+K GA DY++KP D D +++A+A Sbjct: 61 DGFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVA 120 Query: 123 HTHSI---DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + ++ +++ ++G SP+M+++ +I VA S ATVLI G+SGTGKELVA Sbjct: 121 QSDTVATFPQAQEPASSTGINIIGNSPSMRNVYKDIGRVADSNATVLIQGESGTGKELVA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH +S+R P + +NCA L +SLLESELFG+EKGAFTGA + GRF A GT+F Sbjct: 181 RAIHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAHEGTIFF 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG+IS Q +LLRAIQE+E RVG + I V+VR++AAT+R L V G FR+DL+ Sbjct: 241 DEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGEFREDLF 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 +RLNVV IE+P LR R+EDIPLL HFL ++ + K +KGF+ +A+ LLI YDWPGN+R Sbjct: 301 FRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGYDWPGNVR 360 Query: 360 ELENAVERAVVLLTGEYISERE--LPLAIASTPIPLGQSQDIQPLV----EVEKEVILAA 413 ELEN VER++++ G I + L ++ P L + L +VE++VIL A Sbjct: 361 ELENVVERSIIMARGAIIVPEDIQLGATVSQQPTELEILDENLSLKQIISDVERKVILKA 420 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLS 440 LE+ +T A+ L I R++L AK+ Sbjct: 421 LEENNWCRTTVAKVLKINRRSLYAKMK 447 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 181/452 (40%), Positives = 279/452 (61%), Gaps = 18/452 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L+VDD+ C +L+ +L G+ + LA + + AL+ + + D VL D+R+ + DGI Sbjct: 3 KVLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDALKIMETEFPDTVLLDIRLPDADGIE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 + ++K + +PV++MTA+ + E A++A+K GA DYL KPL+ D L ++K++ Sbjct: 63 VMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIKMQRL 122 Query: 127 ------IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E T S +G+S MQ + I V S+ TVLI G+SGTGKE+VAR Sbjct: 123 VSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKVVDSDITVLIQGESGTGKEVVAR 182 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH++S RS +P + +NCA + E L+ESELFGHEKG+FTGA ++ G+F A G +FLD Sbjct: 183 TIHSNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFLD 242 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++ Q +LLR +QE+E +RVG + I VDVR++AAT+R+L V G+FR+DLYY Sbjct: 243 EIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYY 302 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV +++P LR+R+EDI LL +F+++FA + K + G + +AM Y WPGN+RE Sbjct: 303 RLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQEAMIFAEKYAWPGNVRE 362 Query: 361 LENAVERAVVLLTGEYISERELP--------LAIASTPIPLGQSQDIQPLV----EVEKE 408 ++N E+AVV+ + ++P L + + D + L EVEK+ Sbjct: 363 IKNVCEQAVVMARNSVLMLDDMPLIGNGNGFLEFKNNAKISLDTNDKRSLKDIVAEVEKQ 422 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 VIL +L + N+ A+ LG+ R++L AK+ Sbjct: 423 VILKSLNENNWNRQNTAKALGLNRRSLYAKMK 454 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 654 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 204/471 (43%), Positives = 290/471 (61%), Gaps = 31/471 (6%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M + ILVVDD+ + +L A L GY V A G + L ++E DLV+ D+RM Sbjct: 1 MLPEKKQILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++DG+ L+ +P+ PV+++TA+ +V+ AVEALKTGA DY+ KP D + ++ ++KA Sbjct: 61 KVDGMDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKA 120 Query: 121 LAHT--------HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 L + A P + +FG++G+SP +Q L + + VA + TVLI G+SG Sbjct: 121 LRTRDLASADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVADTPTTVLISGESG 180 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKELVARA+H +S R ++P + +NCAA+ + L+ESELFG+E+GAFTGA + GRF A Sbjct: 181 TGKELVARALHENSGRRDRPFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGRFELA 240 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 GGTLFLDEIG+I MQV+LLR +QE E +RVG + I VDVRL+AAT+RDL E+ AG Sbjct: 241 SGGTLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIAAG 300 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR+DL+YRLNVV I +P+LR RR DIP L HF+ +F R +K+++ P+A++ L + Sbjct: 301 TFREDLFYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPEALERLASH 360 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ------------ 400 WPGNIRELEN VERA++ G I +LP I + Sbjct: 361 AWPGNIRELENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAAAAADTSAAPS 420 Query: 401 -----------PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + ++E+++I AL++T GN T AAR L I+RK L K+ Sbjct: 421 TPDGLKEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKMK 471 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 654 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 186/450 (41%), Positives = 276/450 (61%), Gaps = 15/450 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + +L+VDDD+S +L+ L+ GY V A SG + L + LV+ D++M M Sbjct: 6 KKTVRVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGM 65 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G L+E+K P V+++TA+ +VE AVEA+K GA D++ KP + + L+ T+ KAL Sbjct: 66 GGFQLLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALD 125 Query: 123 HTHSIDAETPAVTASQF-----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 ++G SP M+ + I VA ++ATVLI G+SGTGKEL Sbjct: 126 MQGLSRENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVADTDATVLITGESGTGKEL 185 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH S+R P V +NCAA+ LLESELFGH KGAFTGA + +EG+F +A+ GTL Sbjct: 186 VARAIHNRSSRRAAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTL 245 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDE+G++ +Q +LLRA+QE+EVQ VG I +DVR++AAT+ DL + GRFR+D Sbjct: 246 FLDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFRED 305 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRL+V+ + +P LR+R+EDIPLL HF A ++ A F+P+ + ++ Y WPGN Sbjct: 306 LFYRLSVIPVHLPPLRERKEDIPLLVRHF----AAKHGGASVTFSPEILAVMAAYGWPGN 361 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQ------SQDIQPLVEVEKEVIL 411 +RELEN VER +++ + I +LP + P + + L ++E+E+++ Sbjct: 362 VRELENTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVINLPDEGYSLEQLEREIVV 421 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ALE+ N++ AAR L I R TL+ ++ + Sbjct: 422 EALERNNWNQSSAARFLRIPRHTLIYRMEK 451 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 654 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 271/457 (59%), Positives = 331/457 (72%), Gaps = 20/457 (4%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 ++LVVDDD H ++L+ +L GWGY V A G +A+E VR + FD VL DVRMA M G Sbjct: 2 RAELLVVDDDAGHLSMLRTVLTGWGYGVTGATDGAEAVELVRSRPFDAVLLDVRMAGMGG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L IK NPA+PVLIMTAYSSVETAV ALK+GA DYL KPLD D ++ T+E+AL H Sbjct: 62 MEALSLIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDHL 121 Query: 125 HSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 G ++GKSPAM+ L S IA+VAP+EATVL+ G+SGTGKELVA Sbjct: 122 RLARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVAPTEATVLVTGESGTGKELVA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 +A+HA S R+ P+V +NCAALNE+LLESELFGHEKGAFTGA++RREGRF+ AD G++FL Sbjct: 182 KALHAGSPRAGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFL 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG+I+P +Q +LLR IQERE+QRVG ++ + VDVR++AAT+RDL EV AGRFR+DLY Sbjct: 242 DEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLY 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVVAI VP LR+R +DIPLLA HFL RFAE+NRK +KGFTP AMD L+ WPGN+R Sbjct: 302 YRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLLRCPWPGNVR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLG---------------QSQDIQPLVE 404 ELENAVERAV+L GEY++ERELPL+ G L + Sbjct: 362 ELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAGMALDD 421 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 VE+EVILA L TGGNK+EAAR LGITR TL KL + Sbjct: 422 VEREVILATLRDTGGNKSEAARVLGITRATLHKKLKK 458 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 652 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 211/447 (47%), Positives = 281/447 (62%), Gaps = 6/447 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ +LVVDD++S L R GY V + S +AL +V EQ +DL L D++M Sbjct: 1 MSVSKGKLLVVDDELSVRDSLAKWFREEGYEVTVGESANEALSRVAEQTYDLALLDIKMR 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 DG+ +++ L P + V++MT Y+SVETAV L+ GA DY+ KPLD + + KA Sbjct: 61 GTDGVELQRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDPEETAHLVSKA 120 Query: 121 LAHTHSIDAETPAVTASQF----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 LAH + + +V +S AM+ + I VAP++ATVLI G+SGTGKE Sbjct: 121 LAHKRTEQENVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVAPTDATVLITGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 +VARAIHA S R P+V ++C AL E+LLESELFGHEKGAFTGA R++G+F A+GGT Sbjct: 181 VVARAIHALSTRRFHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKGKFEVAEGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIGDIS Q LLR +QERE+ RVG NQ I VD R++AAT++DL + G FR Sbjct: 241 VFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEKLIEEGHFRP 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNV IE+P LR RREDIPLL HF ++FAE+ K V AM++L Y WPG Sbjct: 301 DLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMNMLQQYPWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTP--IPLGQSQDIQPLVEVEKEVILAAL 414 N+RELENAVERA+V+ + E + L + + + + L ++EKE IL L Sbjct: 361 NVRELENAVERAMVVAQEPELRETDFVLKVKAAATMSSTNGTGTPKTLEDIEKEHILHVL 420 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 ++T N+T AA L I R TL K+ R Sbjct: 421 DETNWNQTRAAEMLDIDRVTLHHKIKR 447 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 202/458 (44%), Positives = 279/458 (60%), Gaps = 20/458 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MTH+ +LVVDD+ C +L + L G V A +G AL+ + ++ DLV+ D RM Sbjct: 1 MTHN---LLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMP 57 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG L EIK P +PV++MTAYS+V+ AV++++ GA DY+ KP D D L T+ KA Sbjct: 58 GMDGPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKA 117 Query: 121 LAHTHSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + +VG SPA + +L + V S AT+L+ G+SGTGK Sbjct: 118 LQFRDILKDNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSVRESNATILLTGESGTGK 177 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E+VARAIH R++KP V +NCAA+ E LLESE+FGH KGAFTGA R GRF +AD G Sbjct: 178 EMVARAIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKG 237 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDE+GD+ +Q ++LRA+QER ++ VG + VDVR+IAAT+++L V FR Sbjct: 238 TLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFR 297 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYRLNV I +P+LR+R EDI LLA HF K + GF+P+A+ + Y WP Sbjct: 298 EDLYYRLNVFPIPLPALRERVEDIALLARHFAHSLGATAGKRISGFSPEALQAMASYAWP 357 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPI------------PLGQSQDIQPLV 403 GNIREL+N VERA ++ TG+ I E++LP + P S L Sbjct: 358 GNIRELQNCVERATIVATGQVIEEKDLPGYLFGPQAQGTESSAAISVGPQVPSDLEAALA 417 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EVEK ILAAL+++ G + AA+ +GI+ ++ +L + Sbjct: 418 EVEKAYILAALQQSNGVQAAAAQLIGISERSFWYRLKK 455 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 651 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 214/453 (47%), Positives = 288/453 (63%), Gaps = 14/453 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT N IL+VDD+ + +L G+ AN+GR AL + D+VL D+RM Sbjct: 1 MTAIN-RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGI LKE+++ PV++MTAY+ VETAVEAL+ GA DY+IKP D D L +++A Sbjct: 60 EMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRA 119 Query: 121 LAHTHSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L A ++ SPAM + + A +A S+A+VLI G+SGTGK Sbjct: 120 LQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+ARAIH +S R++ P + +NCAAL ESLLESELFGHEKGAFTGA R+G F A+ G Sbjct: 180 ELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TL LDEIG++ ++Q +LLR +QERE +R+G +Q I VD+R+IAAT+RDL A V G FR Sbjct: 240 TLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV+ + +P LR RREDI LLA HFLQ+F+ N++ + P AM LL + WP Sbjct: 300 EDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIAST--------PIPLGQSQDIQPLVEVEK 407 GNIREL N +ERAVV+ +G I +LP I P+G+ + + VEK Sbjct: 360 GNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEK 419 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +I+ LE+ GN+T A LGI+R+ L+ KL Sbjct: 420 RIIMEVLEQQEGNRTRTALMLGISRRALMYKLQ 452 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 649 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 210/447 (46%), Positives = 291/447 (65%), Gaps = 9/447 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ILVVDD+ + + +L GY VA A +G +AL ++ E +VL DVRM +M Sbjct: 1 MSPQRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMPQM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ LK + ++MTA++SVETAVEA+K+GA ++L+KPLD D + TL K L Sbjct: 61 DGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKVLE 120 Query: 123 HTHSIDA------ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + + ++G+SP +Q + I A + ATVLI G+SGTGKE Sbjct: 121 KRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAGTRATVLILGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+A+A+H S R +KP + ++CAAL+E+LLESELFGHEKG+FTGA R+EGRF ADGGT Sbjct: 181 LIAQALHQESPRKDKPFIRVHCAALSENLLESELFGHEKGSFTGALARKEGRFELADGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIG+ISP +QV+LLR +Q+RE +RVG Q + VDVR++AATHRDL AEV AGRFR+ Sbjct: 241 LFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIVAATHRDLVAEVKAGRFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNVV++ +P LR R+ D+P L HFL+++++ K V+G P + L+ +DWPG Sbjct: 301 DLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQVRGLAPGTLQALLSHDWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP---LVEVEKEVILAA 413 NIRELENA+ERAVVL G+ +S +LP + + + P L +E+E IL Sbjct: 361 NIRELENAIERAVVLAQGQELSTDDLPPVLRGPRPHGTSTGALIPGATLAAIEREAILRT 420 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLS 440 LE G+ + AA LGI+ + + +L Sbjct: 421 LEMVQGSTSRAAEVLGISVRKIQYRLK 447 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 648 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 193/452 (42%), Positives = 281/452 (62%), Gaps = 18/452 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDD+ L LR V A SG++AL +++ FD+V+ D++M ++ GI Sbjct: 3 KILIVDDESIVRNFLAETLRRKNIEVVTAESGKKALSLIKDTPFDMVITDMKMPDLTGID 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L++ K ++P V+++TA+ S+E AVEA+K GA +YLIKP D ++A +EKA H Sbjct: 63 ILRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYLIKPFSPDTIEAIIEKAKEHLSL 122 Query: 127 IDAETPAVTASQFG-------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + G ++G+SP M+ +L ++ VA S A+V I+G+SGTGKE++A Sbjct: 123 VQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRVAQSNASVFINGESGTGKEVIA 182 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 +AIHA+SARS+ P + +NCAA+ E+L+ESE FGHEKGAFTGA+ +R GRF A GTL L Sbjct: 183 QAIHANSARSQFPFIKVNCAAIPETLIESEFFGHEKGAFTGANFKRLGRFELAHKGTLLL 242 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEI +I +Q +LLRAIQE+E +RVG ++ I VDVRLI+ ++RD+ + R+DLY Sbjct: 243 DEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVDVRLISTSNRDMKDAIAHKILREDLY 302 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVV I +P LR R EDI LA +FL++ N K K F+ +++ L+ Y WPGN+R Sbjct: 303 YRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMENHKQAKTFSKESIKKLVGYAWPGNVR 362 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI-----------QPLVEVEKE 408 EL N VERAVV+ T I+ L + +PL + + L E+EK Sbjct: 363 ELANIVERAVVMTTNSEITPEHLYIENNHPNLPLRTASTLSQNTLTSLPVGMTLQELEKR 422 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +I+ L+ N+T+ A LGI+ +TL KL+ Sbjct: 423 LIIETLQAQHNNRTKTAEVLGISVRTLRNKLN 454 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 648 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 200/445 (44%), Positives = 273/445 (61%), Gaps = 8/445 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ IL DD+ + I+ L GYNV SG++ ++ ++E+ +D+ + D+ M Sbjct: 1 MS-KKPTILFTDDEGTFRNIMSKELDRMGYNVTCCASGQETIKNMQERDYDVAILDMNMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M+GI TLK++K + P V+I+T S+E AV+A+K GA DYL KP L L++A Sbjct: 60 VMNGIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQLKELDLLLQRA 119 Query: 121 LAHTHSIDAETPAVT-----ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L T M+G SPA++ + I APS+ TVLI G+SGTGK Sbjct: 120 LEKRKLSRENFHLKTLVHDVQKPSSMIGNSPAIKAVFKMIDKTAPSDVTVLIQGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL A+ IH S R++KP V +NCA L ESLLESELFGH KGAFTGA + R G F A+GG Sbjct: 180 ELAAKMIHQYSKRADKPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG+++ Q +LLR IQ E++RVG N++I+VD R+IAATH++L EV GRFR Sbjct: 240 TLFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLY+RLNV+ + +PSLR+R++D+ L HFLQ+F + + P+A+ + YDWP Sbjct: 300 EDLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFCK--GERTMDMHPEALHAMTLYDWP 357 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALE 415 GNIRELEN +ER VVL G IS ELP I L EVEK I+ L+ Sbjct: 358 GNIRELENTIERTVVLADGNIISIEELPDNIRGRTYEHYGKNGEIALSEVEKNHIIQVLK 417 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 + +K AA+ LGI+ KTL K+ Sbjct: 418 EKNWHKPLAAKTLGISLKTLYNKMK 442 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 191/458 (41%), Positives = 277/458 (60%), Gaps = 18/458 (3%) Query: 2 THDNID-ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 T NI ILV++D+ ++ + LL GY V A +G +ALE + + F+++L D+ + Sbjct: 11 TMKNISQILVIEDEAANREAIALLLGNAGYQVTTAETGEKALEILSKTPFEVILTDLFLP 70 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + GI LK +K P V+++T S E+AVEA+K GA DY+ KPL F+ LQ + KA Sbjct: 71 GVSGIEILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQVIIAKA 130 Query: 121 LAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + + + ++G S MQ++ S + V +++T+LI G+SGTGK Sbjct: 131 VEKSRLVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKVLNTDSTILILGESGTGK 190 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVA+AIH + R EKP V +NC A+ LLESELFGH +GAFTGA + G+F +A G Sbjct: 191 ELVAKAIHYNGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADKTGKFQQAHQG 250 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDEIG + +Q++LLR +QE+EV++VGS++ I +DVR+I+AT+ +L EV GRFR Sbjct: 251 TIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNLEEEVEQGRFR 310 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 DLYYRLNV+ I +P LR+RREDI LLA +FLQ+ + + TP AM+ L +Y WP Sbjct: 311 ADLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGAMNCLENYHWP 370 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP------------LV 403 GN+RELEN +ER V L I + +LP I+ + Q P + Sbjct: 371 GNVRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQISCPRLTESGMDMPEVIA 430 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +E+ +I +A+ +GG K AA L I R TL+ K+ R Sbjct: 431 GIERCLIKSAMGLSGGVKARAASLLNIKRTTLVEKIKR 468 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 202/452 (44%), Positives = 284/452 (62%), Gaps = 12/452 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M +N ILV DDD S TIL+ LL GY V++A G Q ++QV++ DL+L DVRM Sbjct: 1 MAENNRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++DGI LK+++A +P+++MTA+ + T ++A++ GA DY+ KP D D++ T+ + Sbjct: 61 KIDGIEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINRF 120 Query: 121 LAHTHSI-----DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 AE ++G SP MQ + I LVA S+ATVLI G++GTGK Sbjct: 121 FEQQKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAASDATVLITGETGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVA IH +S S+ PLV +NCAAL E+LLESELFGHEKG+FTGAD++R+GRF A G Sbjct: 181 ELVAETIHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFELAHKG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDEIG+++ Q +LLR +QERE +RVG + I VD R+IAAT++ L EV AG+FR Sbjct: 241 TIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAGKFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV+ I +P LR+R+EDIPLL +FLQ+ + +A+ +L+ +DWP Sbjct: 301 EDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLMEHDWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISEREL-------PLAIASTPIPLGQSQDIQPLVEVEKE 408 GN+RELEN +ERAV+L G I+ L I + + + + +E + Sbjct: 361 GNVRELENTIERAVILAQGGVITTHHLVFSQIRTGRNIDLSEVIDKTRSLDEAMRIIESK 420 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +IL ALEK G+ AA L I+ L KL Sbjct: 421 IILEALEKAKGDHALAAEILDISESELKRKLR 452 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 200/455 (43%), Positives = 288/455 (63%), Gaps = 20/455 (4%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +LV+DD+ + +L A+LR G++V +A +G Q L + + D+V+ D+ M ++ G+ Sbjct: 2 AKVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGM 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L I+A NP +PV+I+TA+ +V++AV+A+K GA DY+ KP D L + + KA Sbjct: 62 EVLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAAKTNE 121 Query: 126 SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 S ++ ++G S +Q + I VA + +TVLI G+SGTGKEL+A A+H + Sbjct: 122 SARRSVRPDVKARAAIIGDSSTIQEVYKIIDKVADTPSTVLITGESGTGKELIATALHGA 181 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S+R +KP + +NCAA+ +LLESELFG+E+GAFTGA + GRF AD GTLFLDEIG+I Sbjct: 182 SSRRDKPFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEI 241 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 MQV+LLRAIQE E +RVG + VDVRL+AAT+RDL AE+ AGRFR+DLYYRL VV Sbjct: 242 PVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVV 301 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 I +P+LR+RR D+P+LA HF++++ R K ++G AM LL Y WPGNIRELEN + Sbjct: 302 PISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYAWPGNIRELENLI 361 Query: 366 ERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPL--------------------VEV 405 ER ++ G I+ R+LP + + + E+ Sbjct: 362 ERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAEL 421 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 E+++I+ LE+TGGN T AAR L I+RK+L K+ Sbjct: 422 ERDLIVKKLEETGGNVTRAARLLQISRKSLQTKMK 456 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 197/458 (43%), Positives = 290/458 (63%), Gaps = 19/458 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT +++ +LV DD++S +LQ L GY V +G++AL +E +D+ + D+RM Sbjct: 11 MT-ESVRVLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIRMP 69 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 E+DG+ EI + P +P+++MTA+ S ETAV A+K GA DY++KP + D ++ + +A Sbjct: 70 EVDGLQAFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSRA 129 Query: 121 LAHTHSIDAETPAVTASQF---------GMVGKSPAMQHLLSEIALVAPSEATVLIHGDS 171 + Q +VG+S +Q + I VA S+ATVL+ G+S Sbjct: 130 IRMQQLTKEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVANSKATVLLTGES 189 Query: 172 GTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE 231 GTGK +VA+AIH +S R EKP + +NC ++ E LLESE+FGHEKGAFT A ++ G+F Sbjct: 190 GTGKGMVAKAIHYASDRREKPFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQKPGKFEL 249 Query: 232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNA 291 A+GGTLFLDEI ++SP +QV+LLR +QE+E +RVG + +VR+IAAT+RDL E++ Sbjct: 250 AEGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDLNKEISE 309 Query: 292 GRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 FR+DLYYRLNVV+I +P L +R EDI LLA +FL+RF+ + F P+ +D+ + Sbjct: 310 KSFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMFFAPEVLDIFRN 369 Query: 352 YDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQS---------QDIQPL 402 Y WPGNIRELENAVE A+++ I LPL+I + + + L Sbjct: 370 YSWPGNIRELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTIILGDDSFKPLREVL 429 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +EVEK I A+E+TGGN+T+AA+ L I+R+ LL K++ Sbjct: 430 LEVEKRHISEAIERTGGNRTQAAKLLQISRRALLYKIN 467 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 645 bits (1665), Expect = 0.0, Method: Composition-based stats. Identities = 200/455 (43%), Positives = 287/455 (63%), Gaps = 15/455 (3%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 T N IL+ +DD + + L LL GY + ++GR+A++ E ++LV+ D++M Sbjct: 11 TMKNQKILIAEDDDLNRSNLTELLNAEGYEIKAVDNGRKAMDAFVEDKYELVITDLKMPN 70 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 DG+ LK +K +NP V++MT Y +V++AVEA+K GA DY+ KP+ D + T+ +AL Sbjct: 71 GDGLELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFDYISKPMRNDLVTLTVNRAL 130 Query: 122 AHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 ++ + M+G S M+ + I VA S++TV+I+G+SGTGKE Sbjct: 131 SYASLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVAKSDSTVIIYGESGTGKE 190 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARAIH +S R+ PL+ +NC A+ E LLESELFGHEKGAFTGA + R GRF A GG+ Sbjct: 191 LVARAIHFNSNRNNFPLIPVNCGAIPEDLLESELFGHEKGAFTGAIRNRLGRFELAQGGS 250 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIGD+SP +QV++LR IQE++ +R+G + I+ DVR+IAATH++L V RFR+ Sbjct: 251 IFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVRIIAATHQNLELAVTEKRFRE 310 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YR+NV+ I +P+LR+R DI +LA HFLQ+FA+ +K V FTP+A+ ++HY WPG Sbjct: 311 DLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKKEVTRFTPEAIACMLHYPWPG 370 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE----------VE 406 N+RELEN +E VV+ I +LP I ++ Q E E Sbjct: 371 NVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFKKETQSFKEYQIPEEGIDFNDVVYQFE 430 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 K ++L AL KT G K AA+ L + R TL+ KL R Sbjct: 431 KNILLKALAKTNGVKNRAAKLLNLNRTTLVEKLKR 465 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 644 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 197/454 (43%), Positives = 276/454 (60%), Gaps = 16/454 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ++LVVDD+ + +L A+L GY V A +G QALE V +Q FD +LCD++M M Sbjct: 6 EPKKNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPRM 65 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+A L P V++M+AY +++TAVEALK GA DY+ KP D + L+KA Sbjct: 66 DGLAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKASE 125 Query: 123 HTHSIDAETPAVTA--------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 + ++ KS AMQ + I VA + TVL+ G+SGTG Sbjct: 126 RERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAHDTTVLVTGESGTG 185 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KELVAR++H +S R+ L+ +NC + E+LLESELFGH KGAFTGADK + G A Sbjct: 186 KELVARSLHFNSPRAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGLCEIAHK 245 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GTLFLDEIG++ +QV+LLR +Q+RE++ VG++ ++D+R++AAT R+L A+V G F Sbjct: 246 GTLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADVAEGVF 305 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DL+YRLNV+ I +P LR R+EDIPLL F+Q F ++ K + G P A+ L+ + W Sbjct: 306 REDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAPAALSRLLAHTW 365 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPL----AIASTPIPLGQSQDIQPLVE----VE 406 PGN+RELEN +ERAVVL G+ I+ +LP A P D + E Sbjct: 366 PGNVRELENLIERAVVLAEGDTITPDDLPPGFGTDSAGGPGDALAGFDGYSIKAAQKIFE 425 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 K +I AL KTGGN+T ++ L I+ +LLAK+ Sbjct: 426 KRLIEKALAKTGGNRTRTSKLLEISHPSLLAKMK 459 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 192/445 (43%), Positives = 281/445 (63%), Gaps = 6/445 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL VDD+ C L +L WG+ V +A G AL + E D+VL D+ M E Sbjct: 1 MGSARILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRKANEFRPDVVLSDLAMPET 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ L+ +K P PV+ +T +++ AVE+++ GA D+++KPLD L+ +++AL Sbjct: 61 DGLWLLRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALE 120 Query: 123 HTHSIDA----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 ++ ++ +S M+ ++ + VAPS+A+V I G+SGTGKE+V Sbjct: 121 KKETMREVQTLRRRLKQLGSSDLIAQSVGMRKVIELVEKVAPSKASVSISGESGTGKEVV 180 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 +RA+H S R +KP + +NCA++ +L+ESELFGHE+GAFTGAD+RR G F A GGTLF Sbjct: 181 SRAVHNLSLRRDKPFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGGTLF 240 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDE+G+I +Q +LLR ++E +++R+G I VDVR++ AT+RDL E+ GRFR+DL Sbjct: 241 LDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFREDL 300 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 Y+RLNV I +P LR+RR+D+P+L HF+ +F + K V G P+AM++L +YDWPGNI Sbjct: 301 YFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNYDWPGNI 360 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI--QPLVEVEKEVILAALEK 416 REL NAVERAV+L GE I+ LP +A + L VE+E IL +L++ Sbjct: 361 RELRNAVERAVILCDGELITREHLPPDMAGKSPERHTFRLPFGLSLDAVEREYILGSLQR 420 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 G NK A LG++ KTL KL+R Sbjct: 421 NGNNKARTAEVLGVSEKTLYNKLNR 445 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 197/444 (44%), Positives = 280/444 (63%), Gaps = 11/444 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 ILVV+D+ +++ L G++V A S + L+ V D+VL D+++ MDG Sbjct: 2 KKRILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDRA--DMVLTDLKLPNMDG 59 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 L I+ N +PV++MTA+ +VETAVEA+K GA D+L+KP D+L ++KAL Sbjct: 60 QEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALEVR 119 Query: 125 HSIDAETPA-----VTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + +VG+SPAMQ + + I V PS ATVL+ G+SG GK+L+A Sbjct: 120 ALREENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERVGPSRATVLLTGESGVGKDLIA 179 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH S R ++PLV +NC A+ E+L+ESELFG+EKGAFTGA + G+F +AD GT+FL Sbjct: 180 RAIHFHSPRKDRPLVKINCTAIPENLMESELFGYEKGAFTGAQTTKPGKFEQADTGTVFL 239 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ +QV+LLR +QERE +R+GSN +DVRL+AAT++DL A + G FR+DLY Sbjct: 240 DEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVAATNQDLRAALEQGTFREDLY 299 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVV + +P LR+R+ DIP LA HF+ + A V+ T M+ L+ Y WPGN+R Sbjct: 300 YRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVESITDAGMEKLMAYHWPGNVR 359 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQS----QDIQPLVEVEKEVILAALE 415 ELEN +ER++V+ TG + ++ L A P G + L + E+E+I AL Sbjct: 360 ELENVIERSLVMATGTQLDADDIKLESAPRPRAQGNDNHFLPEGLSLDQYEQEIIREALR 419 Query: 416 KTGGNKTEAARQLGITRKTLLAKL 439 + GNK++AAR LG+TR L +L Sbjct: 420 RADGNKSQAARLLGLTRNALRYRL 443 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 184/447 (41%), Positives = 278/447 (62%), Gaps = 11/447 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 IL+VDD+ S C L +L GY V SG +A+ + E + +VL D+ + +DG Sbjct: 2 QKSILIVDDEESICKSLGDILVDEGYEVQTVQSGEEAIRLLDEDLPGIVLLDIWLPGIDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + LK IK+L+P +PV++M+ + ++ETAV+A K GA D++ KPL + + TL+ AL + Sbjct: 62 MEVLKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSLEKIILTLKHALDLS 121 Query: 125 HSIDAETPAVTA--SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + + + GKSP + L+ I++VAP+ A +LI G++GTGKELVARAI Sbjct: 122 RLEEENVLLKQKINRDYELTGKSPPIIELMEMISIVAPTNAWILIMGENGTGKELVARAI 181 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R++KP+V +NCAA+ E L+ESELFGHEKGAFTGA +++ G+F A GT+FLDE+ Sbjct: 182 HRQSKRADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDIAHEGTIFLDEV 241 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 D+S Q ++LR +QE++ +RVG N++I +DVR++AAT++DL E+ GRFRQDL+YRL Sbjct: 242 ADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRFRQDLFYRL 301 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ ++VP LR R+EDIPLLA FL FA + + K A+ LL+ + WPGN+REL+ Sbjct: 302 NVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLMEHSWPGNVRELK 361 Query: 363 NAVERAVVLLTGEYISERELPL---------AIASTPIPLGQSQDIQPLVEVEKEVILAA 413 N +ER ++ T I+ ++P L + ++ EK+ I Sbjct: 362 NFIERLAIMTTSNVITVHDIPPLPRDGHKVEPFREPGFELLAGSFREAKMDFEKQYISRK 421 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLS 440 L + GN ++ A +G+ R L K+ Sbjct: 422 LREFDGNISKTAESIGLERSNLHKKIK 448 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 641 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 200/454 (44%), Positives = 280/454 (61%), Gaps = 14/454 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + IL++DD+ ++ +LQ LL GY V + AL + E D+V+ D++M Sbjct: 1 MS-EKAHILIIDDEKNYLLVLQTLLEDEGYTVTAISDPETALAFLDESEVDVVVTDMKMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++ G L+ +K P IPVLIMTA+ S+E+AVE +K GA DY+ KP D L ++ A Sbjct: 60 KVTGRQVLERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYITKPFSNDELLLSIHNA 119 Query: 121 LAHTH-----SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + + E +VG+S A++ +L + APS +TVLI G+SGTGK Sbjct: 120 VELARAHRQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVERAAPSRSTVLITGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+ARAIH +S R + P V++NC ALN +LESELFGHEKG+FTGA R GRF +ADGG Sbjct: 180 ELIARAIHYTSPRKDNPFVSVNCMALNPGVLESELFGHEKGSFTGAVAMRRGRFEQADGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEI +++P +QV+LLR +QER +RVG + I VD+R++AAT++DLAA V G FR Sbjct: 240 TLFLDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVAATNKDLAAMVEKGTFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 DLYYRLNVV I +P LR+RREDIPLL HF+ + N K F+ +A++ L Y+WP Sbjct: 300 DDLYYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAKTFSTEALNYLTGYEWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP--------LVEVEK 407 GNIR+LEN VE +VL+ G I+ LP I + D+ P L ++E Sbjct: 360 GNIRQLENVVESCLVLVPGTVINVDNLPAEIRDEESQFKSAVDLLPVQLDLADTLEKIEA 419 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +I AL + + +AA LGI++ L KL + Sbjct: 420 ALIRRALVRADLVQVKAAEYLGISKSLLQYKLKK 453 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 641 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 195/470 (41%), Positives = 273/470 (58%), Gaps = 33/470 (7%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ILV DD+ S +L L+ G+ V LA+ GRQAL ++E +DL + D++M M Sbjct: 1 MTLTRILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ L I+ + + V+IMTA +S++ AVEA+K GA DY+ KP D D + A +EK Sbjct: 61 SGLDLLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGR 120 Query: 123 HTH------SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + E + ++G S AMQ + I VA S+ T+LI G+SGTGKE Sbjct: 121 AREIAGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVADSDITILIQGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 +VARAIH +S R KP V +NCAA+ LLESELFG E+GAFTGA +R++G+F +A+ GT Sbjct: 181 MVARAIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIGD+ +Q ++LR +QE EV RVG Q I+V+VR++AAT+++L V FR+ Sbjct: 241 IFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNVV I + LR+RR+DIP L +FL R K TP+AM LL + WPG Sbjct: 301 DLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALLSRHSWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERE---LPLAIASTPIPLGQSQ---------------- 397 N+RELEN ++RAV+L ++E + L T + + Sbjct: 361 NVRELENTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEAIVEAKLRSCLTGI 420 Query: 398 --------DIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 + L +VE+ +I LEKT N+ +AA LGI R TL K+ Sbjct: 421 EKLDKSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINRNTLRKKI 470 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 641 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 197/449 (43%), Positives = 281/449 (62%), Gaps = 14/449 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDD+ ++ +L A+L GY ANSG +A++ + DLVL D++M MDG+ Sbjct: 3 TILIVDDEKNYPPLLAAVLGDEGYETLTANSGLEAIQILEGSDVDLVLTDMKMPGMDGME 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 ++ IK +P +PVL+MTAY +V+ + A++ GA Y+ KP + L +++ALA Sbjct: 63 LMERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQNEQLILFVKQALAMYRV 122 Query: 127 IDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + S ++GKSPAM ++ I VAP+ ATVLI G+SGTGKE+VA++ Sbjct: 123 VQENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVAPTNATVLIQGESGTGKEMVAKS 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R + P V +NCAAL ES+LESELFGHEKGAFTGA ++GRF ADGGTLFLDE Sbjct: 183 IHFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG+IS +QV+LLR +QE+ +RVG + I VD+RLIAAT+RDL EV FR+DL+YR Sbjct: 243 IGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAE--RNRKAVKGFTPQAMDLLIHYDWPGNIR 359 LNV+ I++P LR+R++DIPLL HFLQ++A V+ P L Y WPGN+R Sbjct: 303 LNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYAWPGNVR 362 Query: 360 ELENAVERAVVLLTGEYISERELPLAIAST-------PIPLGQSQDIQPLVEVEKEVILA 412 ELEN +ERA++L + IS +LP + + + + L VE+ +I Sbjct: 363 ELENVIERAIILCNSDAISVNDLPRELTRSVSNTLHMEGIPVDATLYETLSMVEQAMIKR 422 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 A+ + ++ AA+ LGI + L K+ + Sbjct: 423 AMLMSDNVQSHAAQILGIGKSGLNQKIKK 451 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 640 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 200/446 (44%), Positives = 282/446 (63%), Gaps = 7/446 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M + ILVVDD+ L L GY VA GR A+E+++ + + +++ D++M Sbjct: 1 MPTETTRILVVDDEEIVRESLGGWLEKDGYVVAPLPDGRSAVEKLKSERWSIMIVDLKMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG+ L+ K L P + V+IMTAY++V+TAV A+K GA DYL+KP D + L ++K Sbjct: 61 GMDGLQVLEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFDPEELSIMMQKI 120 Query: 121 LAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 ++ + A ++ KSPAMQ + A S +T+L+ G+SG+GK Sbjct: 121 VSQQSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E++ARA+HA S R+ P V ++CAAL ESLLESELFGHEKG+FTGA RR+G+F A GG Sbjct: 181 EVLARAVHAESPRAGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDE+GDI P +Q+ LLR ++ER RVG N+ I VDVR+IAAT+RDL + G+FR Sbjct: 241 TLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV+ I VP LR+RREDIPLL +F++R + ++ ++G +P AM L+ +DWP Sbjct: 301 EDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALMAHDWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALE 415 GN+REL N +ER V+ TG I +L L + + L EVEK + A L Sbjct: 361 GNVRELRNVLERGAVVATGTVIQLSDLGLPTRLEA--ASKPGTLASLEEVEKRHVAAVLA 418 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 GN +++AR LGI R TL K+ + Sbjct: 419 HANGNVSQSARILGIDRVTLYNKMRK 444 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 196/453 (43%), Positives = 274/453 (60%), Gaps = 17/453 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + ILVVDD+ S L LL+ GY V + G+QA+ ++EQ +DL++ D++M + Sbjct: 25 ENQHRILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRL 84 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG L +K + ++++TA+S+ E AV+A+K GA DY+ KP + ++ +E AL Sbjct: 85 DGFGLLDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVENALE 144 Query: 123 HTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 S ++GKS MQ + I V+ S+ VLI G+SGTGKEL Sbjct: 145 RMDLRRENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKVSASKVNVLITGESGTGKEL 204 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH +S R ++P V + C A+ E+LLESELFGHEKGAFTGA ++++G F ADGGTL Sbjct: 205 VARAIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFTGAVQQKQGLFEVADGGTL 264 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEI ++ PMMQV+LLR IQE E ++VG + + VDVRL+AAT++DLA V +FR+D Sbjct: 265 FLDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVDVRLVAATNKDLAQAVTEDQFRED 324 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRLNV+ + +P LR RREDIPLL HFLQ+ M + Y WPGN Sbjct: 325 LYYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLTPGFS---TTIPDGVMRRFLDYHWPGN 381 Query: 358 IRELENAVERAVVLLTGEYISERELPLAI---------ASTPIPLGQSQDIQPLVEVEKE 408 IRELEN VER VVL I+E LP + T +P L +EK+ Sbjct: 382 IRELENTVERCVVLGGKGEITEDSLPPHMLCISGTGDQQLTELPEEGLDLDDYLGAIEKD 441 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++L AL++TGG + AA L IT +++ +L++ Sbjct: 442 ILLKALDRTGGVRKRAAELLHITFRSIRYRLAK 474 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 639 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 217/437 (49%), Positives = 296/437 (67%), Gaps = 4/437 (0%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDDD H T+L+ L GY V A G + L ++ + DL+L D++M +DG+A Sbjct: 3 KILLVDDDKGHRTMLKVNLGELGYQVITAGDGDEVLAKLTKNKIDLILLDMKMPRIDGLA 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT-- 124 TL + N IPV+++TA+SS+E A+EA+K GA DY+ KP+D DNL + KAL Sbjct: 63 TLSLLSQQNNRIPVIVITAFSSMENAIEAMKKGAFDYVTKPVDIDNLHIAISKALHQKIS 122 Query: 125 -HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 P + ++G+S MQ L S+I+L+APS+AT+L+ G+SGTGKELVA AIH Sbjct: 123 PPLSPGTEPQADSKFPEIIGESAPMQELFSQISLIAPSDATILLSGESGTGKELVATAIH 182 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S R E L+ +NCAAL+E+LLESELFGHE GAFTGA K+++G F AD GTLFLDEIG Sbjct: 183 RHSKRKEGALIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERADKGTLFLDEIG 242 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+S QV++LR +QE E +RVG N I V+VR+IAA+HR+L + G FRQDL++RL+ Sbjct: 243 DMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEGTFRQDLFFRLS 302 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV + +P+LR+R DIP+LA FL + ++NRK +KGF+ +A+DLL+ Y WPGNIRELEN Sbjct: 303 VVPLHLPALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEYPWPGNIRELEN 362 Query: 364 AVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTE 423 ++ER V+L GE I+ ELP P G+ L +VEK I AL ++G NK+ Sbjct: 363 SIERGVILCLGEQITAHELPPQFFRNRSP-GELSSRDTLRDVEKRAIQQALARSGFNKSA 421 Query: 424 AARQLGITRKTLLAKLS 440 A+QLGI R+TLL K+ Sbjct: 422 TAKQLGIARQTLLNKIR 438 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 184/449 (40%), Positives = 269/449 (59%), Gaps = 8/449 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + ILV+DDD+ +L+ L G+ L GR+A + ++ + F+++L D++M Sbjct: 1 MSQPSDPILVIDDDLRMRQLLRDTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 GI L++ A NP V+++T + +VE+AVEA+K GA DY+ KP + D L T+++A Sbjct: 61 HFSGIEILEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPFEPDELLLTVQRA 120 Query: 121 LAHTHSIDAETPAVTA----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 H +VG+SP ++ L IA VAP TVLI+G++GTGKE Sbjct: 121 TEHARLRQENRRLQQQVAGCRGDELVGESPPLKKLKELIAQVAPFSTTVLINGETGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L A+ IH S R ++P + +NC AL E+LLESELFGH KGAFTGAD+ + G F D GT Sbjct: 181 LAAKLIHKWSGRHKQPFLAINCGALPETLLESELFGHVKGAFTGADQDKPGLFETVDQGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEI ++ QV+LLR +QE +VG Q DVR+IAA+ R L+ V AG FR+ Sbjct: 241 LFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAASSRPLSEGVAAGSFRR 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNVV++E+P LRQRREDIPLLA HFL ++ + K V+ + L+ + WPG Sbjct: 301 DLFYRLNVVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQVQTIPAPVITRLLDHSWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIP----LGQSQDIQPLVEVEKEVILA 412 N+RELENAVERA++ G+ + LP + +EK++I+ Sbjct: 361 NVRELENAVERALLFCPGQELQAEHLPPLETGGEEAELHTTADDAKSLTMASMEKKLIIK 420 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL++ G++ + A LGI+ +L K+ + Sbjct: 421 ALQRANGHRGKTAELLGISPASLWRKIKK 449 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 189/450 (42%), Positives = 281/450 (62%), Gaps = 14/450 (3%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL+VDD+ ++ +L LL G++V A++ AL+ + + DL++ D++M M GI Sbjct: 2 AHILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQIDLIISDLKMPRMSGI 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L+ + +P +++TAY++V+TA++A+K GA DYL+KP D + + T++KAL ++ Sbjct: 62 DFLRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKALDYSK 121 Query: 126 SIDAE----TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + +VG SPAM+ L ++IA VAP++ ++LI G+SGTGKELVA+A Sbjct: 122 LQNENWLLRRELEQNRDRTLVGNSPAMESLRNQIAQVAPAKTSILITGESGTGKELVAQA 181 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S RS K LV++NCAA E+LLESELFGHE+GAFTGA +R++G +DGGTLFLDE Sbjct: 182 LHRLSPRSNKALVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLDE 241 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG+ +Q +LLR +QE+ +RVG IS D+R+IAATHR+L + G FR+DLYYR Sbjct: 242 IGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYR 301 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV++ +P LR RREDIPLL+ FL+R + + + QA L HY+WPGN+REL Sbjct: 302 LNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYEWPGNVREL 361 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD----------IQPLVEVEKEVIL 411 +N +ER ++ G + + LP S + + L +E+++I Sbjct: 362 QNILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGCSETAAMPLQQPLPEHLETIEQKLIQ 421 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AAL G + +AA LGI+R L KL + Sbjct: 422 AALIDARGVQAKAAELLGISRSNLQYKLKK 451 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 179/456 (39%), Positives = 263/456 (57%), Gaps = 20/456 (4%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 N +L+VDD+ L+ +L GY VA A +G + L+ E DL+ D+ + MDG Sbjct: 2 NARVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L ++ + ++PV++++ + ++ETAV A+K GA D++ KPL + + + KAL + Sbjct: 62 LEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEYY 121 Query: 125 HSIDAETPAV----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ M G S ++ L +I VAP++A VLI G++GTGKE+ AR Sbjct: 122 RLRRENQALRSRLTQSTTVEMTGNSASIVELRGQIGRVAPTDAWVLITGENGTGKEIAAR 181 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 +IHASS R +KPLV +NCAA+ E L+ESELFGHEKGAFTGA+ + G+F A GTLFLD Sbjct: 182 SIHASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAETAKTGKFEMAHQGTLFLD 241 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EI D+S Q ++LR +QE+ +RVG ++ + VDVR+IAAT++ L E+ AGRFR+DLYY Sbjct: 242 EIADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGRFREDLYY 301 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL V+ + VP LRQR +D+ LL G F+ R + F P A L+ Y WPGN+RE Sbjct: 302 RLRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVTFAPDACSALLCYHWPGNVRE 361 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPI----------------PLGQSQDIQPLVE 404 L+N VER +++ +G+ ++ LP P G Sbjct: 362 LKNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMIPEGVMDFKAARTA 421 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 E + A L++ GGN T A +G+ R L KL Sbjct: 422 FEARFLEAKLQEFGGNITRLAEAIGLERSYLYRKLK 457 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 174/446 (39%), Positives = 272/446 (60%), Gaps = 10/446 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 I++V+DD + + LR +GY + G +AL + ++FD+ + D+++ +DG Sbjct: 2 KEKIIIVEDDPAMRLGMNHFLRAYGYEATSCDDGAKALSILDSEIFDIAIVDLKLPGVDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + LK IK ++P V+I+TA++ V+TAV+A+K GA DY+ KP + L +E+ L Sbjct: 62 LTLLKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLKFR 121 Query: 125 HSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 E G+V S M+ + +I VA ++ VLI G+SGTGKEL+A Sbjct: 122 TLEKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVAKTDVPVLIQGESGTGKELIA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 AI S R EKP + +NCAA+ E+L ESELFG+EKGAFTGA + ++G+F A+GGT+F Sbjct: 182 NAIQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELANGGTIFF 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ +Q +LLR I++ V R+G + I ++VR I AT ++L + A +FR+DL+ Sbjct: 242 DEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEKFREDLF 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YR+NV+ I +P L++R+EDIP+L FL+ F+E+ K +P A + L+ YD+PGN+R Sbjct: 302 YRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSYDYPGNVR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPI-----PLGQSQDIQPLVEVEKEVILAAL 414 EL++A+ERA++L I + LP + + + + EK +I+ AL Sbjct: 362 ELKHAIERALLLSKDGVIDIKHLPEEFSPLSSFQKKCFISNFSLKECIENFEKNLIIKAL 421 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLS 440 ++ G KTEAA++LGI+RK L K+ Sbjct: 422 QECGWKKTEAAKKLGISRKALWEKIK 447 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 638 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 210/455 (46%), Positives = 285/455 (62%), Gaps = 15/455 (3%) Query: 1 MTHD-------NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLV 53 M+ ILVVDD+ + L+ +L GY +A A G +AL + V Sbjct: 1 MSMPSVGARPGKERILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAV 60 Query: 54 LCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNL 113 L DVRM MDGI L+ + ++MTA++SVE AVEA++ GA +YL+KPLD + + Sbjct: 61 LADVRMPRMDGINLLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPLDVNAV 120 Query: 114 QATLEKALAHTHSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIH 168 LEKAL E +VG +P + + + AP+ ATVLI Sbjct: 121 LVVLEKALEKLRLQRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLIL 180 Query: 169 GDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGR 228 G+SGTGKEL A+A+H S R++K + +NCAAL+E+LLESELFGHEKGAFTGA R+EGR Sbjct: 181 GESGTGKELFAQALHEESPRADKAFIKVNCAALSETLLESELFGHEKGAFTGAIGRKEGR 240 Query: 229 FVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAE 288 F ADGGTLFLDEIGDISP +Q++LLR +Q+RE +RVG Q + VDVRL+AAT+RDLAAE Sbjct: 241 FELADGGTLFLDEIGDISPALQIKLLRVLQQREFERVGGTQTLKVDVRLVAATNRDLAAE 300 Query: 289 VNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDL 348 V GRFR+DLYYRLNVVA+ +P LRQR+ DIP L HF+ ++++ K ++G P ++ Sbjct: 301 VKNGRFREDLYYRLNVVAVTLPPLRQRKGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNA 360 Query: 349 LIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP---LVEV 405 ++ +DWPGN+RELEN VERAVVL G ++ +LP + + P L E+ Sbjct: 361 VLSHDWPGNVRELENVVERAVVLCKGSELTADDLPPTLRGPRPRERAPGALIPGATLYEI 420 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 E+E IL LE GG+ + AA LGI+ + + +L Sbjct: 421 EREAILRTLEMVGGSTSRAAEILGISVRKIQYRLK 455 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 638 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 176/436 (40%), Positives = 278/436 (63%), Gaps = 3/436 (0%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDDD +++ L+ +GY + +S +AL +++++ FDL+L D M E+ G+ Sbjct: 4 RILIVDDDRDILNLMKLKLKNYGYTIFTESSPVEALNRIKDEHFDLILVDQLMPELSGLE 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 + +K + PV++MTAY S+E AV A+K GA Y+ KP++F+ L+ +++AL + Sbjct: 64 FIDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINFEELKIIIDQALEVSDL 123 Query: 127 IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 + ++ +SP M+ +L +AP + TVLI G+SGTGKE++A IH +S Sbjct: 124 KKELNELKSLLSTDIIAESPQMKQVLETAKKIAPFDTTVLITGESGTGKEMIANFIHKNS 183 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 R E+P + +NC A+ LLESELFG++KGAFTGA+ ++G EA+GGTLFLDEIG++ Sbjct: 184 LRKERPFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGTLFLDEIGELP 243 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 +QV+LLR +QE E++ +GSN+ +DVR IAAT+RDL V G+FR+DLYYR+NV+ Sbjct: 244 LDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFREDLYYRINVIP 303 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 I +P LR+R+EDI LA +F+ +F R K + +A + L++YD+ GN+RELEN +E Sbjct: 304 IHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNYDYKGNVRELENIIE 363 Query: 367 RAVVLLTGEYISERELPLAIASTPIPLGQSQDI-QPLVEVEKEVILAALEKTGGNKTEAA 425 RAV+ GE I+ ++P+ ++ I + + + E E+ + LEKT N ++A+ Sbjct: 364 RAVLTTEGEEIT--DIPVTVSKRYILSQELKPFKEAKKEFEESYLKNLLEKTDFNISKAS 421 Query: 426 RQLGITRKTLLAKLSR 441 + GITR + + R Sbjct: 422 KIAGITRAQIYRMIKR 437 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 198/451 (43%), Positives = 285/451 (63%), Gaps = 12/451 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 I+VVDDD L L+ GY+V +G+QA+ ++ ++ FD++ D++M M Sbjct: 1 MSVEKIMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ L+++K ++ V++MTAY ++E+AVEA++ GA DY+IKP D ++ + + Sbjct: 61 DGMEALEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRVNE 120 Query: 123 HTHSIDAETPAVTAS-----QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 I +AS + K+ M + ++ +A S+A+VLI G+SGTGKEL Sbjct: 121 RQKLIAENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLKKIAQSKASVLIQGESGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH S R EKP + +NCAAL ESLLESELFGHE+GA+TGA +R GRF A+ GTL Sbjct: 181 VARAIHYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYTGAVAKRIGRFELANEGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 LDE+ +ISP +Q +LLR ++E E +RVG + I +DVR++A T+RDLA E+ G FR+D Sbjct: 241 LLDEVSEISPNIQAKLLRVLEEEEFERVGGEKTIKIDVRIVATTNRDLAKEIQKGTFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRLNVV I +P LR+RREDIPLLA +L++++ N +VK +AMD L Y+WPGN Sbjct: 301 LFYRLNVVPIHLPPLRERREDIPLLANTYLEKYSSENNSSVKSIEKRAMDYLSQYNWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD-------IQPLVEVEKEVI 410 +REL+N ++RAVV+ + E + I D Q + + EKE+I Sbjct: 361 VRELKNIMQRAVVMGSSEELGLENFTSLIDIKKSEHTMCNDSVNIKKNGQSIEDAEKELI 420 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 LEKTGGNKT+AA L IT +TL KL++ Sbjct: 421 FTTLEKTGGNKTKAAGLLKITTRTLRNKLNK 451 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 189/453 (41%), Positives = 279/453 (61%), Gaps = 14/453 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-QVFDLVLCDVRMAE 61 N ILVV+D + L + GY+V +SG A++++ + V+DLV+ D++M + Sbjct: 2 MKNYKILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVYDLVVTDLKMKK 61 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 ++G+ L +K NPA V+++TAY ++ TAV+A++ GA DY+ KP + + + AL Sbjct: 62 VNGLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNAL 121 Query: 122 AHTHSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + G++G S M +L A V+ +E+TVLI G+SGTGKE Sbjct: 122 EKKELKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADVSRTESTVLITGESGTGKE 181 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+ARAIH + RS P V +NC AL E+L ESELFGH KG+FTGA K + G F A GT Sbjct: 182 LIARAIHYNGPRSGYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHAHKGT 241 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIG+ S QV+LLR +Q+ E+++VG N+ I VDVR+IAAT+ +L VN GRFR+ Sbjct: 242 IFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQGRFRK 301 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YR+NV+ I +P L++R+EDIPLL +FL+ + ++ +K + F+ AM +L++YDWPG Sbjct: 302 DLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNYDWPG 361 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD--------IQPLVEVEKE 408 NIREL+N VERAV L + I LPL + ++ L E EK Sbjct: 362 NIRELQNIVERAVALSKNQVIGVEALPLPTGGFVAHNSNPERDVTVKSSIVETLSEQEKN 421 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I+ A+ K GGN+T+ ++ LGI+ TL K+ + Sbjct: 422 AIVEAMNKYGGNQTKVSQVLGISTTTLWRKIKK 454 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 198/445 (44%), Positives = 282/445 (63%), Gaps = 6/445 (1%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 +LVVDD + LLR G+ V A G A ++V+ + FD+VL D+RM Sbjct: 25 PPTGGKVLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMPT 84 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG+ L+ ++ +P V++MTAY ++E+AVEA++ GA D+L KP + + KAL Sbjct: 85 VDGMEVLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVAKAL 144 Query: 122 AHTHSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + E +VG+SPAM+ +L + VAP++ATVL+ G+SGTGKE Sbjct: 145 EKRRLLGEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLRVAPTDATVLVTGESGTGKE 204 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARA+H +S RS+KP V +NCAA+ ++LLESELFGH +GAFTGA + R G F EA+GGT Sbjct: 205 LVARALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGT 264 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LF+DEIG+ SP Q +LLRA+QE E++RVG + + V+VR+IAAT++DL + RFR+ Sbjct: 265 LFIDEIGETSPGFQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFRE 324 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNVV + +P LR+RRED+PLLA HFLQRF +R + TP+A+ L+ +DWPG Sbjct: 325 DLFYRLNVVPLRIPPLRERREDVPLLAAHFLQRFVQRTGSE-RVLTPEAVASLVAHDWPG 383 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK 416 N+RELEN +E+A L TG I ++ + + P + + E+ I AAL + Sbjct: 384 NVRELENIIEQAAALCTGREIRAADVQIEARAAPAGGAGVTLADAVEDTERRAITAALAR 443 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 G + AR LGI+ TL K+ R Sbjct: 444 CGNDLGRVARDLGISGTTLWRKMKR 468 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 188/455 (41%), Positives = 267/455 (58%), Gaps = 18/455 (3%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 + ILVVDD+ +L Y V A G +AL++V E +D+++ DV M +MDG Sbjct: 2 SARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L+ +K +P I V++MT S ++TAV+A+K GA DYL KP D D L+ + +AL Sbjct: 62 LEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALERR 121 Query: 125 HSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + ++G SP MQ + IA AP+ +TVLI G+SGTGKE++A Sbjct: 122 QLMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEMIA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH +S R ++P VT++C L+E+LLESELFGH KG+FTGA + G F A+ GTLFL Sbjct: 182 RAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVANNGTLFL 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DE G+I Q +LLR IQERE + VG+ +VRLI AT++DL A V G FR+DLY Sbjct: 242 DEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEGTFREDLY 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YR+NV I P+LR+RR+DIP LA HFL+ F K V + AM LL++Y WPGN+R Sbjct: 302 YRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLMNYGWPGNVR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTP-------------IPLGQSQDIQPLVEVE 406 ELEN ++RAV+L + I + L I ++P + + + + EVE Sbjct: 362 ELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDELKRIKKIAREKSVEEVE 421 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 K + L++ N T +A + G+ R A + + Sbjct: 422 KLFVQETLKRNASNVTRSAEETGMQRTNFQALMKK 456 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 187/444 (42%), Positives = 271/444 (61%), Gaps = 5/444 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL+VDDD+ +++ L G N L + G +A E V Q DL++ D+ M ++ Sbjct: 1 MPDPLILIVDDDLRMRQLIRDTLASEGINAVLCSDGAEAAEMVLRQTTDLIITDLMMPQI 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ L NP V+++T Y S+E+AV+A+K GA DYL KP + D L +++AL Sbjct: 61 DGMELLNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQRALV 120 Query: 123 HTHSIDAETPAVTA----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 D ++G S M L + I +AP + TVLI G++GTGKEL Sbjct: 121 RLRLQDENRQLRQQVAGCQADELLGASKQMTTLKALITRIAPFDTTVLIQGETGTGKELA 180 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 AR IH S R ++ + +NC AL E+LLESELFGH +GAFTGADK ++G AD GTLF Sbjct: 181 ARMIHRLSQRRDQRFLPINCGALPETLLESELFGHARGAFTGADKDKKGLLESADHGTLF 240 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEI SP QV+LLR +QE RVG ++ SVD+R+IAA++ L EV GRFR DL Sbjct: 241 LDEINTTSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQTGRFRSDL 300 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRLNVV I +P LR+R DI LLA +FL R+A + + +P+A+ L +Y WPGN+ Sbjct: 301 FYRLNVVTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSSISPEALQSLRNYHWPGNV 360 Query: 359 RELENAVERAVVLLTGEYISERELP-LAIASTPIPLGQSQDIQPLVEVEKEVILAALEKT 417 RELEN +ERAV++ G + + LP +++ TP+ Q++ P+ EVE+ I+ L+ T Sbjct: 361 RELENIIERAVIMADGNELQPQYLPRFSVSDTPLSSSSDQELLPMAEVERRHIIRVLKAT 420 Query: 418 GGNKTEAARQLGITRKTLLAKLSR 441 G++ +A++ LGI+ +L K+ + Sbjct: 421 AGHRGKASKLLGISLASLWRKVKQ 444 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 635 bits (1640), Expect = 0.0, Method: Composition-based stats. Identities = 189/441 (42%), Positives = 277/441 (62%), Gaps = 6/441 (1%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 I +LV+DD+ L+ +L+ GY+V +SG +AL+ + +Q FD+VL D++M ++DG Sbjct: 2 IKVLVIDDEKITLKNLEHVLKKEGYDVTGTDSGVEALKLIEKQEFDIVLTDIKMEKVDGF 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L++ KAL P V+++T Y++VE AV A+K GA Y+ KP D ++ + +A Sbjct: 62 EILRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYIAKPFKLDIIRKIILEASEKVK 121 Query: 126 SIDAETPAVTA----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + ++ ++ M LL +AP++ VLI G+SGTGKEL AR Sbjct: 122 LKKEVKQLRQQLDFHEKVNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARY 181 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R + P + +NC A +E LL +ELFGHEKGAFTGA+ ++G A G+LFLDE Sbjct: 182 IHLNSLRKKGPFLAVNCGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDE 241 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 I ++S MQ +LLR IQERE R+G+ + I VDVR IAAT+RD+ EV G+FR+DLYYR Sbjct: 242 ITEMSLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYR 301 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV IE+P LR+R++DIPLL +F ++++ +K + G + +A++LL++Y++PGN+REL Sbjct: 302 LNVVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEITGVSEEAINLLVNYEYPGNVREL 361 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD--IQPLVEVEKEVILAALEKTGG 419 EN +ERAVVL I LP + I + ++ L E+EKE I L + G Sbjct: 362 ENIIERAVVLCNSSQIDVEHLPQDLKELKIEVFTKKEGKFMSLEELEKEYIKWILREVGN 421 Query: 420 NKTEAARQLGITRKTLLAKLS 440 NKT AA+ LGI R +L KL Sbjct: 422 NKTVAAQILGIDRVSLWRKLK 442 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 635 bits (1640), Expect = 0.0, Method: Composition-based stats. Identities = 183/449 (40%), Positives = 279/449 (62%), Gaps = 14/449 (3%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL++DDD + +++ + + G+ SG++ALE + LV+ D+RM ++ G+ Sbjct: 2 ARILIIDDDPAMVSVISDICQERGHQTVAYASGQKALESLAVHAPQLVITDLRMDKVGGL 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L+E + + P PV+++TAY +VETA+EA+K GA DY+ KP D LQ T+++AL + Sbjct: 62 DILRECREVLPQTPVILITAYKTVETALEAMKLGAYDYITKPFKVDELQLTIQRALDNQS 121 Query: 126 SIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + ++G S MQ + + IA VA +++T+LI G+SGTGKELVAR Sbjct: 122 LVRENRNLRQIVKEKYRFENIIGTSTKMQEIYNLIAKVADTDSTILIQGESGTGKELVAR 181 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H +S R +P V +NC+AL E+LLESELFGH+KG+FTGA + + G F EA+GGT+FLD Sbjct: 182 ALHFNSTRQHQPFVAINCSALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFLD 241 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ ++ +Q +LLR +QER+++RVG + + ++VR++AAT+ L ++ G FR+DLYY Sbjct: 242 EVNSMAQPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYY 301 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL V+ +E+P+LR+R +DIPLL HFLQ+ A + K P+A+++L Y WPGN+RE Sbjct: 302 RLAVIPVEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKIDPKAIEMLAKYRWPGNVRE 361 Query: 361 LENAVERAVVLLTGEYISERELPLA-IASTPIPLGQSQDIQPL--------VEVEKEVIL 411 LENAVERA L I +LP I P + P+ E E+ I Sbjct: 362 LENAVERACALCDDALIRTTDLPPQVIRHATAPPVEHSGTLPVGQTLDEYIREQERRYIE 421 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLS 440 ++ G ++ +AA+ LGI+ TL KL Sbjct: 422 ETIKFNGNSREKAAKMLGISMATLYRKLE 450 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 634 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 199/443 (44%), Positives = 282/443 (63%), Gaps = 8/443 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV-FDLVLCDVRMAEMDGI 65 ILVVDDD + + LL+ GY +G A+E++ + + +VL D M EMDGI Sbjct: 3 KILVVDDDPALGEMCTELLKSKGYAADAVTNGADAIERISKDPEYAIVLTDFVMPEMDGI 62 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L +IK +N AI V++MT+Y +V +AVEA+K GA DY+ KP D L +EK L Sbjct: 63 QLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKILQMQR 122 Query: 126 SIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + + ++G+SP ++ + I+ V+ +EA +LI G++GTGKELVA+ Sbjct: 123 LEGEVDRLRSELGEKYTFGNIIGESPKIKKIYDIISHVSGTEANILIQGETGTGKELVAK 182 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +SAR+ V ++C++L E+LLESELFGHEKGAFTGA K R GRF +AD GT+FLD Sbjct: 183 AIHYNSARNNHRFVKVDCSSLTETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIFLD 242 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG+IS +Q +LLR +Q+ E + VGS++ I VDVR+IAAT+ DL V G FR DL+Y Sbjct: 243 EIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFY 302 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ I +P LR+R EDIPLLA HFL ++NRK V+GF+ +++L Y WPGNIRE Sbjct: 303 RLNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNRKTVEGFSRDTLNILTSYAWPGNIRE 362 Query: 361 LENAVERAVVLLTGEYISERELPL--AIASTPIPLGQSQDIQPLVEVEKEVILAALEKTG 418 LEN +ERAV+L I+ ++PL T L + L + E+++I+ LE Sbjct: 363 LENVIERAVILCKKNRITPEDVPLYQEKMGTRPGLSGKPLQELLEQTERQIIINTLEAND 422 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 +K + A+ L I+R +L KL++ Sbjct: 423 ADKEKTAKILKISRASLYNKLNK 445 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 634 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 217/451 (48%), Positives = 292/451 (64%), Gaps = 12/451 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 +++ILVV+D S +L+ L G+ V A SG +A++ + FDLVL D +M M Sbjct: 1 MKSLNILVVEDGQSQREMLRDFLLKEGHTVEEAASGEEAVQSIAGGAFDLVLLDYKMPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ L+E+K LNP V+I+TAY ++ETAV+A+K GA+DY+ KPL+FD L L++ Sbjct: 61 DGMQVLQEVKRLNPETDVVIITAYGTIETAVDAMKAGAVDYITKPLEFDELLLLLDRVAE 120 Query: 123 HTHSIDAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 I + ++ S M L S A VA S ATVL+ G+SGTGKE Sbjct: 121 RRTLIRENEILRRQLKDQGVTTDAIIFTSQKMAALTSMAARVASSRATVLLQGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+AR IH S RS +P++T+NC AL ESL+ESELFGHEKGAFTGA RR GRF EADGGT Sbjct: 181 LLARLIHQLSPRSTRPIITVNCGALPESLIESELFGHEKGAFTGATSRRIGRFEEADGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIG+++ +QV+LLR +QERE QRVG N I DVR+I+AT+RDL V +FR+ Sbjct: 241 LFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRADVRIISATNRDLETMVKEEKFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNVV + +P LR+RREDIP L HFL+RFA N K + G + +A DLL+ YD+PG Sbjct: 301 DLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAENGKKISGISSEARDLLMKYDYPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPL------AIASTPIPLGQSQDIQPLVEVEKEVI 410 N+RELEN +ERAVV+ E I +LP A + G+ + + +EK++I Sbjct: 361 NVRELENIIERAVVIARNEIIYMEDLPFREDTLVATSGGVPEEGEGRLRGAIENLEKQMI 420 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 A+EK G ++T AA LG++ + L KL + Sbjct: 421 QDAMEKAGDHQTRAAEMLGLSERMLRYKLKK 451 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 633 bits (1634), Expect = e-180, Method: Composition-based stats. Identities = 197/445 (44%), Positives = 273/445 (61%), Gaps = 9/445 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 ILVVDD+IS L+ +L+ GY + +A SG +ALE++R DL+L D+ M MDG Sbjct: 2 KPKILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 +A L+EIK + +PV+I++ + ++ETAV+A + GA D++ KPL + + +++ AL Sbjct: 62 LAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNALDFH 121 Query: 125 HSIDAET--PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + M G+S A++ L +I AP+ ATVLI G++GTGKEL AR I Sbjct: 122 RLEEENLLWRQKAHRTSHMTGRSEAVESLREQIRRAAPTNATVLITGENGTGKELAARMI 181 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S RS +P+V +NCAA+ E L+ESELFGHEKGAFTGA +RR GRF A+GGTLFLDEI Sbjct: 182 HQLSKRSHRPMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANGGTLFLDEI 241 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+S Q ++LR +QE+ +RVG ++ I VDVR++AAT++D+ E+ AGRFRQDLYYRL Sbjct: 242 GDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRFRQDLYYRL 301 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ I VP LR R +DIPLL FL A + K P L Y WPGNIREL Sbjct: 302 NVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAVFGPLQQYSWPGNIRELR 361 Query: 363 NAVERAVVLLTGEYISERELPLAIAST---PIPLGQSQDIQPLVE----VEKEVILAALE 415 N +ER V++ G+ I R+LPL + P L E E+ +L L+ Sbjct: 362 NFIERMVIMTPGQRIGPRDLPLDFLNRLPKPPEEAGPYQCATLREARSVFERAYLLRKLD 421 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 + N + A Q+G+ R L K+ Sbjct: 422 EFAWNVSLTAAQVGLERSHLHRKMK 446 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 633 bits (1634), Expect = e-180, Method: Composition-based stats. Identities = 197/443 (44%), Positives = 270/443 (60%), Gaps = 6/443 (1%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 ILV+DD+ + LQ L GY V A G +E + DL++ D++M M G Sbjct: 2 KFSILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMPRMSG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 L+ + A+ P IP++I+T + +VE AVEA+ GA D+L KPLD + L + +AL + Sbjct: 62 ELVLQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKPLDLNRLSLLVRRALQNR 121 Query: 125 HSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 I + S +VG+SPAM + + A S+A+VLI G+SG GKEL+A Sbjct: 122 ELIVQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELIA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 AIH S R KPL+ ++CA+ E +LESELFGHE+GAFTGA R +GRF A G++FL Sbjct: 182 NAIHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEGSMFL 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++S +Q++LLR +QER +RVG + I VDVR+I+AT+R+L E+ FR+DLY Sbjct: 242 DEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFREDLY 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVV I VP+LR+R+ED+PLL FL+ AE N K + PQA L YDWPGNIR Sbjct: 302 YRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWPGNIR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI-QPLVEVEKEVILAALEKTG 418 +L N +E AV++ +G I +L I S I + + EKE+IL LE Sbjct: 362 QLRNCIESAVIMSSGPVIHIEDLSEPIRSLGETSSIRIPIGVSMEDAEKEIILQTLEAQK 421 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 GNK++ A LGI RKTL KL + Sbjct: 422 GNKSKTADVLGIGRKTLYLKLDQ 444 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 632 bits (1632), Expect = e-180, Method: Composition-based stats. Identities = 178/445 (40%), Positives = 269/445 (60%), Gaps = 12/445 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+++D++S L L GY V A G + ++ + +Q FD+V+ D+R+ DG+ Sbjct: 3 KILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADGLE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL----- 121 LK ++ P V+++T Y+ V+TAVEA+K GA DY+ KP + +L + +E+ L Sbjct: 63 VLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFLCQTAH 122 Query: 122 -AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + + E +V SP+M + + I + A ++++V+I+G+SGTGKELVA Sbjct: 123 VEDSQRLREEVAEHQR-FEEIVSNSPSMLSVFNLIQMAAKTDSSVIIYGESGTGKELVAN 181 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H S R +KP + +NCAA+ E+LLE+E+ G+EKGAFTGA +R++G+ ADGGT F D Sbjct: 182 AVHNRSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFFD 241 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+S +Q +LLR ++ R +RVG + + VD+R I AT R L E+ G+FR+DLYY Sbjct: 242 EIGDMSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLYY 301 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 R+NV+ I +P LR+R +DIPLL F+ F + + V P+AM+LL Y +PGN+RE Sbjct: 302 RINVLPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSYPYPGNVRE 361 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIP-----LGQSQDIQPLVEVEKEVILAALE 415 L++AVE AV + I+ LP I E E++ I+ L+ Sbjct: 362 LKHAVEMAVTFCSDRVITPSCLPGEIREGSPALQGWRGDAGALESSRKETERQTIINVLK 421 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 KTGG K AA+ LGI+R+TL KL Sbjct: 422 KTGGRKMAAAKALGISRETLWRKLK 446 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 205/447 (45%), Positives = 280/447 (62%), Gaps = 8/447 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 IL+V+DD L +L GY V +SG +ALE++R+ FDLV+ D+++ M Sbjct: 1 MGKYTILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ LK IK + I +I+TAY +V+TAV A+K GA DY++KP D + L+ +EK L Sbjct: 61 DGMEVLKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLE 120 Query: 123 HT-----HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 + + + +VG S +M + I V S +TVLI G++GTGKEL Sbjct: 121 KRGLFLDNLRLQQQLEKKYTFENIVGTSESMMGVFKTINRVKESRSTVLIRGETGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH +SAR+ KP + +NCAALNE L+ SELFGH KGAFTGA + G F ADGGTL Sbjct: 181 VARAIHFNSARALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVADKRGLFEAADGGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGD+ +Q LRA+++ E+Q VGS Q V VR+IAAT+++L A V G FR+D Sbjct: 241 FLDEIGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAMVEQGGFRKD 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRLNVV I++P LRQR+EDI LLA HFL ++A +N K ++G P+A+ LL +Y WPGN Sbjct: 301 LYYRLNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNKNIRGIAPRALRLLENYSWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPI---PLGQSQDIQPLVEVEKEVILAAL 414 +RELEN +ERA + + I+ LP + P S + L V + I+ L Sbjct: 361 VRELENIIERATLFELTQEITPDSLPQVVIEPCTVLDPSPFSMETTSLEAVSRRHIVRIL 420 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 E T NKT+A++ LGI R TL ++R Sbjct: 421 EMTNHNKTQASKLLGIDRSTLWRIMNR 447 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 183/482 (37%), Positives = 259/482 (53%), Gaps = 46/482 (9%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 + IL++DD+ L+ +L G+ V A SG L + + DLV D+ M MDG Sbjct: 2 HARILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 +A L ++ A P +PV++++ + ++ETAV A++ GA D++ KPL + + ++AL + Sbjct: 62 LAVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEYG 121 Query: 125 HSIDAETPAVTASQ----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + M G+SP M+ L +IA VAP++A VLI G++GTGKEL AR Sbjct: 122 DLRRENEALRDSLPTAHADEMNGRSPVMETLRGQIARVAPTDAWVLITGENGTGKELAAR 181 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIHA S R+++PLV +NCAA+ E L+ESELFGHEKGAFTGAD + G+F A GTLFLD Sbjct: 182 AIHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAHKGTLFLD 241 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+S Q ++LR +QE++ +RVG ++ + VDVR+IAAT+++L E+ AG FR+DLYY Sbjct: 242 EIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGTFREDLYY 301 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL V + +P LR+R D+PLL F QR A F P A + L Y WPGN+RE Sbjct: 302 RLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEALARYPWPGNVRE 361 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIP---------------------------- 392 L N VER ++L G ++ LP Sbjct: 362 LRNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAATAAGGRAASGTGGATGQGG 421 Query: 393 --------------LGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAK 438 E + + A L + GGN T A +GI R L K Sbjct: 422 DPLPDHLPDMAALLAPGMDLKAARAAFEAQYLAARLAECGGNVTRLAEAVGIERSHLYRK 481 Query: 439 LS 440 L Sbjct: 482 LK 483 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 629 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 190/494 (38%), Positives = 284/494 (57%), Gaps = 59/494 (11%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L+VDD+++ +LQA+L+ GY VA A G +ALE + ++ D+V+ D++M ++ G+ Sbjct: 3 KVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGLG 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+ + + P PV+I+TA+ ++ETAV+ALK GA DY+ KP D D L + +EKA+ Sbjct: 63 LLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTRIK 122 Query: 127 IDAETPAVTAS--QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 E ++G+VG S ++ + I VA ++ T+LI G++GTGKEL+A AIH Sbjct: 123 NHGEVILAEEEIDKYGIVGCSEKIREIYKTIEKVASTKTTILITGETGTGKELIAHAIHR 182 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 S R + + +NC A+ ++L+E+ELFG+EKGAFTGA + G+F AD GT+FLDEIG+ Sbjct: 183 GSPRKDNAYIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQGTIFLDEIGE 242 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 I MQV+LL+ +Q++ +RVG + I VDVR+IAAT+RDL E+ G FR+DLYYRLNV Sbjct: 243 IPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFREDLYYRLNV 302 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 V I++P LR+R+EDI L +FL RF ++ +KG PQ ++ Y+WPGNIRELEN Sbjct: 303 VPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECFKKYNWPGNIRELENL 362 Query: 365 VERAVVLLTGEYISERELPLAI-------------------------------------- 386 +ER ++L G IS ++P I Sbjct: 363 IERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFEEYLLREMENFTERLVLMA 422 Query: 387 -ASTPIPLGQSQDIQPLVEVEKE------------------VILAALEKTGGNKTEAARQ 427 + G + L EK+ +I LE+ GN T AA++ Sbjct: 423 RSEKKREAGDRLEEDSLDSTEKDQGVYRKFIKSKTAEVEKKMIEKILEECSGNITHAAKR 482 Query: 428 LGITRKTLLAKLSR 441 LG +RK L K+ + Sbjct: 483 LGFSRKGLQIKMVK 496 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 629 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 190/454 (41%), Positives = 278/454 (61%), Gaps = 19/454 (4%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD++S L+ LL G+ V A G AL ++R++ FDL++ D+RM +G+ Sbjct: 3 RILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMPPPNGLE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L + + L P +PV+++TA++S + AV A+K GA DYL KP D ++ + AL+ Sbjct: 63 LLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALSSRRQ 122 Query: 127 IDAETPAVTAS------QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + T + G++G SP M + I VAP++A VLIHG+SGTGKELVAR Sbjct: 123 LPEPTLKTNSEVPANGGFVGIIGNSPEMLKIYEVIRRVAPTQANVLIHGESGTGKELVAR 182 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH S + V + C+A+ ESL ESELFGH KGAFTGA R G F +A+ GT FLD Sbjct: 183 AIHQLSPAVQHQFVPIICSAIPESLFESELFGHAKGAFTGATTNRTGLFEQANYGTAFLD 242 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG+++P+ Q +LLR +QERE++RVG + I ++ R+I+AT+RDL EV AGRFR+DL+Y Sbjct: 243 EIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMISATNRDLEEEVAAGRFREDLFY 302 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL VV I VP LR+R+ D+PLL HFL +++ K ++ + A++LL++YD+PGN+RE Sbjct: 303 RLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKDIRKISSYALELLMNYDFPGNVRE 362 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV-------------EVEK 407 LEN +ER V + + I L L + D L + E+ Sbjct: 363 LENIIERGVAMENSQIILPESLTLTGRRHGGQPAPADDRGSLEADVFNRGLEPALTDFER 422 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++I+ AL+K G +KT AA L + ++L K+ + Sbjct: 423 QMIIKALQKAGNSKTRAAELLNTSFRSLRYKIKK 456 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 628 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 206/455 (45%), Positives = 281/455 (61%), Gaps = 15/455 (3%) Query: 1 MTHDN--IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVR 58 M +N +L+++D+ L L ++ A+ A+ + + D+VL D+R Sbjct: 1 MNRENDFPKLLIIEDEKRTRMGLVMALGEE-FDTYEASDLSSAMAILENEPIDIVLADIR 59 Query: 59 MAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE 118 + + G L+++K+L L MTAY SVE AVEA+K GA DY+ KPLD + L+ TL+ Sbjct: 60 LGKESGFEILRKVKSLPFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITLK 119 Query: 119 KALAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGT 173 + ++G S AM+ + +I VA S+ATVL+ G+SGT Sbjct: 120 RIYQSRKVEVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVASSKATVLLEGESGT 179 Query: 174 GKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD 233 GKELVA AIH S R P V ++CAAL+ LLESELFGHEKGAFTGA +RR GRF EA Sbjct: 180 GKELVAHAIHQLSPRKNFPFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAA 239 Query: 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR 293 GTLFLDEIG+I QV+LLRA+ E+ +QRVGSN++++VDVR+IAAT+++L V G+ Sbjct: 240 RGTLFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGK 299 Query: 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 FR+DL++RLNVV I +P LR+R+EDIPLLA FL FA N K + +P+AM +L+ YD Sbjct: 300 FREDLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEYD 359 Query: 354 WPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP-------LVEVE 406 WPGN+REL+ A+E VVL GE I R+LP I L ++ L E E Sbjct: 360 WPGNVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRPLLSAPISVESSEPDCFNLKEAE 419 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 K +IL AL G KT AA++LGI+RKTL K+ + Sbjct: 420 KRLILHALRVCQGKKTSAAKKLGISRKTLQRKIKQ 454 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 628 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 187/471 (39%), Positives = 266/471 (56%), Gaps = 37/471 (7%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDDD L Y V NSG ALE V + FDL+L D +M +G+ Sbjct: 6 KILIVDDDEGLVHFLTRFFSRKEYEVLSCNSGTAALEAVGREPFDLILLDYKMPGKNGLE 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 TLKEI+ L P+++MTAY +++TA+EA+K GA DYL+KP D + L+ AL Sbjct: 66 TLKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLERIARDALEVNRL 125 Query: 127 IDAE---------TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 + + V + ++G MQ + I VA + TVLI G+SGTGKEL Sbjct: 126 MKEVVSFPAHSLTSARVPKGEIKIIGNHTRMQEVYKLIGQVANKDVTVLITGESGTGKEL 185 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARA++ S R KP + +NCAA+ E+L ESELFG+E+GAFTGA++ G+F GGTL Sbjct: 186 VARALYHHSDRKNKPFLGVNCAAIPETLFESELFGYERGAFTGAERTHIGKFERCHGGTL 245 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 F DEI ++ Q +LLRA+Q E++RVG+ Q + VDVR++ AT+++L V GRFR+D Sbjct: 246 FFDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVATNKNLERAVEQGRFRED 305 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LY+RL +++I +P LR+R EDIP L +FL RF E + ++ A+ L + WPGN Sbjct: 306 LYWRLKIISIHLPPLRERPEDIPALVDYFLVRFGEEYKSPIRRIEDGALAKLKSHAWPGN 365 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKE--------- 408 +RELEN V RAVVL +G+ I E L + P D P VE++ Sbjct: 366 VRELENTVRRAVVLSSGDVIREEHLRFD-SGGHEPSSPEWDKNPWARVERKLEELIPDLL 424 Query: 409 ------------------VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++ LE+ G N+ +AAR LG++R TL ++ + Sbjct: 425 QVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGVSRNTLRHRMKK 475 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 627 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 200/480 (41%), Positives = 270/480 (56%), Gaps = 40/480 (8%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 T ILVVDD+ L L G+ A +G +ALE + FDLVL D+ M Sbjct: 33 TPGPARILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQG 92 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 MDG+ L+ ++ +P V+++T Y +V+TAVEA+ GA YL KP D + +A ++KAL Sbjct: 93 MDGLDLLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPYDLNEARALVQKAL 152 Query: 122 AHTHSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + ++G +P MQ L IA VAPS+ TVLI G++GTGKE Sbjct: 153 EKRRLRQEVARLREQLRERSLPVPLLGSAPCMQALKRTIAQVAPSDVTVLILGETGTGKE 212 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L AR +H S RSE + +NC A NE LLESELFGHE+GAF+GA ++R+G F A+GGT Sbjct: 213 LAARMVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFSGAVRQRKGLFEAAEGGT 272 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDE+G++S MQV+LLRA+QER ++RVG I VDVRL+AAT++DLAAE AGRFR Sbjct: 273 LFLDEVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLAATNKDLAAEAAAGRFRH 332 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNVV + +P L +R ED+PLLA +F ++ A + P+ + +L Y +PG Sbjct: 333 DLYYRLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAPHIAPETLGVLARYPFPG 392 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIA----------------------------- 387 N+REL N +ERA VL G+ I+ +LP + Sbjct: 393 NVRELHNIIERAAVLCAGDVITPADLPPDLRALAGIAGGAGGNGGKGGAAGPALVLRADE 452 Query: 388 ------STPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + L E E+ I LE GGN+T AA+ L I R +L KL R Sbjct: 453 AARMPGGAGEGMTPDGRPMTLDENERAHIEWVLELAGGNRTHAAKVLDIDRASLWRKLKR 512 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 627 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 188/449 (41%), Positives = 281/449 (62%), Gaps = 10/449 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL+VDD+ IL+ +LR GY++ +ALEQ+ + FDL+L D++M Sbjct: 5 RKSGSILIVDDERGQRDILKLILRKEGYDIVDVPGVGEALEQLDRREFDLILTDLKMQGQ 64 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ L+ + + +P V++MTA+ SV++AVEA++ GA DYL KPL+ DNL TL++A Sbjct: 65 SGLDLLERVLSDDPQQCVILMTAHGSVDSAVEAMRMGAFDYLEKPLERDNLVLTLQRAFE 124 Query: 123 HTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 + M+G P M + +A +A + +TVLI G+SGTGKEL Sbjct: 125 RIGLVRENRVLQKRVASTTPIPSMLGDHPRMAEVFRVVAKIAATTSTVLIVGESGTGKEL 184 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH S R + P + +NCAA+ E+L+ESELFGHEKG+FTGA R G F A+GGT+ Sbjct: 185 VARAIHEGSQRRDNPFMAINCAAIPETLIESELFGHEKGSFTGAHARELGVFEAANGGTV 244 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG+++ MQ +LLRAIQE+EV+RVG I +DVR+I+AT+++L E+ G FR+D Sbjct: 245 FLDEIGEMNVSMQAKLLRAIQEKEVRRVGGRVNIPLDVRIISATNKELEQEIRRGSFRED 304 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRLNV+ I +P LR+R D+ LA F+++++ V+G + A+ LL++Y WPGN Sbjct: 305 LYYRLNVIRINLPPLRERGSDVKTLAEFFVKKYSLATGIDVEGISRPALKLLMNYSWPGN 364 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPI-----PLGQSQDIQPLVEVEKEVILA 412 +R+LE+ +ERAV++ I +LP I ST + P + + +EK +I+ Sbjct: 365 VRQLESVIERAVLMAESSVIEPGDLPAEITSTSLLAGVVPFDLPPEGIDMETLEKNLIIK 424 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 A+E+ +AA LG++ KTL +L + Sbjct: 425 AMERADWVIGKAAPLLGMSYKTLQYRLEK 453 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 187/448 (41%), Positives = 277/448 (61%), Gaps = 11/448 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 I+V DD+ ++ LL+ GY V A +G++A++ + D++L D +M + G Sbjct: 2 KAKIVVADDEPRIRAMIALLLKEDGYEVQTAANGQEAVDALLSFRPDVILLDQQMPVLTG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L++IK L P V+ +TA+ SV AV+A+K GA D++ KP D D L T+ +A+ H Sbjct: 62 VEALEKIKRLCPNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSRAVEHC 121 Query: 125 HSIDAETPAVTASQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 G++G+ ++ ++ ++ VA ++ATVLIHG+SGTGKEL+A A Sbjct: 122 RMKGEIKHLKNKLGDMNTGIIGEKSGLRQVMLQVERVAETDATVLIHGESGTGKELIAWA 181 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R +P V +NC A+ +L+ESELFGHEKGAFT A + + G F A+GGTLFLDE Sbjct: 182 IHDRSKRVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDE 241 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ QV+LLR ++ER++ R+G + I V+VR++AAT+R+L EV G+FR DL YR Sbjct: 242 IGELPLDAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYR 301 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV I++P LR+R+EDIPLLA FL++ +++ TP+AMD L YDWPGN+R+L Sbjct: 302 LNVFTIQLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAYDWPGNVRDL 361 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIP----LGQSQDIQPLVE----VEKEVILAA 413 ENAV+ A++L I LP I S + ++++ L + EK IL+A Sbjct: 362 ENAVQSAMILCVDRQIHPGHLPARIKSYQMERLTAPQEAEEDTSLRDTNSLAEKARILSA 421 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 L+K N+T A L I+RKTL K+ R Sbjct: 422 LQKHNYNRTLTAEALNISRKTLFNKMKR 449 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 626 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 188/450 (41%), Positives = 278/450 (61%), Gaps = 14/450 (3%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 ILVVDD+ T L+ +L G GY V A +GR A++ + + FD+V+ D++M DG Sbjct: 2 ARILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMELADGY 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 LK+++ + PV+I+TA+ S+++AVEA+K GA DY++KP ++++ T+ L H Sbjct: 62 DVLKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNILEHGS 121 Query: 126 SIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 +VG S AM + I AP++A ++I G+SGTGK L+A Sbjct: 122 LRLENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEKAAPTKANIMITGESGTGKGLLAE 181 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H +S R +KP + +NCAA+ E+LLESELFG++KGAFTGA+ + G ADGGTLFLD Sbjct: 182 AVHQNSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITMADGGTLFLD 241 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ ++Q ++L+ ++ EV +G + +VD+R+I+AT++DL + + FR+DLYY Sbjct: 242 EIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIREKTFREDLYY 301 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ I +P+LR+RREDIPLLA F++ K VKGF AM ++ Y WPGN+RE Sbjct: 302 RLNVIEIRMPALRERREDIPLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMAYPWPGNVRE 361 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQS-----QDIQPLV----EVEKEVIL 411 L+N VERAV+ GE I+ ELP I G +QPL + EK++I+ Sbjct: 362 LKNVVERAVIFAGGEQITPAELPAKIRRGDATAGPGGNTEVSGLQPLKAMVYDYEKDIII 421 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL + G+K A+ LGI TL K+S+ Sbjct: 422 NALNRFDGSKEMVAKTLGIDLTTLYRKMSK 451 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 626 bits (1615), Expect = e-178, Method: Composition-based stats. Identities = 186/445 (41%), Positives = 269/445 (60%), Gaps = 11/445 (2%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +L++DD+ + LQ LL GY V A G L Q+ +DLVL D + + +GI Sbjct: 22 VLIIDDEAAIRESLQTLLELEGYQVDTAVDGGDGLMQMAAHPYDLVLLDFALPDRNGIEI 81 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LKEI++ + I V+++TAY +VE AV A++ GA +++ KP D + L A + A+A Sbjct: 82 LKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQKPWDNEKLLADVGAAIARRRVE 141 Query: 128 DAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + A + ++GKS M + + +APS +TVL+ G+SGTGKEL+A+AI Sbjct: 142 EENLQLKRALKQRYNFENIIGKSEPMLRIFDLVTQIAPSRSTVLLQGESGTGKELIAKAI 201 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R ++ V +N ++ LLES LFGH KGAFT A ++G F ADGGTLFLDEI Sbjct: 202 HMNSTRKDRAFVPINTGSMPTDLLESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLDEI 261 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G +S Q ++LR +Q+R+ +G Q I VDVR+IAAT+ DL V G+FR+DL+YRL Sbjct: 262 GTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFYRL 321 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ I++P LRQRR D+PLL HF+++F E N K + TP+A+ L+ Y+W GN+RELE Sbjct: 322 NVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMRMTPEALRPLLDYNWQGNVRELE 381 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLG------QSQDIQPLVEVEKEVILAALEK 416 N +ERAVVL G I+ LP + L + + + + E+ +I+ LEK Sbjct: 382 NVIERAVVLANGPSITIDLLPDNVVGRGSSLSFVETRPDASLFEIMEDCERRIIVDMLEK 441 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 G N+TEAA + I TL K+ R Sbjct: 442 VGWNQTEAAEKFRIPLSTLNQKIKR 466 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 624 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 173/444 (38%), Positives = 273/444 (61%), Gaps = 9/444 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L++DD+ IL +L GYNV A+S +A + + E + +++L D+++ +GI Sbjct: 3 TLLIIDDEPLQREILLTILSEEGYNVYTASSLEEASKIINEILPEIILTDLKLGNQNGIE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L + V+++TA+ ++ +AV A+K GA DYL KPLD + L T+ KA + Sbjct: 63 ILNSLPEEPFRPAVIVITAFGTISSAVNAIKQGAFDYLTKPLDKEVLLVTIRKAEERMNL 122 Query: 127 IDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 I G++GKS M +L + P+ ATVLI+G+SGTGKEL+ARA Sbjct: 123 IKENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKKATPTNATVLIYGESGTGKELIARA 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R +KP + +NCAA+ ++L+ESELFG+E GAFTGA+ R+ G AD GTLFLDE Sbjct: 183 IHYNSPRKDKPFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFLDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 I +I Q +LLR +Q++EV+++GS VDVR+IAAT+++L+ +V +FR+DLYYR Sbjct: 243 IAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L V+ +E+P LR+R+EDIP L F++++++ K V G +A++ L++Y WPGNIREL Sbjct: 303 LKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNYSWPGNIREL 362 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPI----PLGQSQDIQPLVEVEKEVILAALEKT 417 E+ +ERA+++ + I+ ++ + + + E+EKE+I AL K+ Sbjct: 363 ESVIERAIIICEKDKITFNDIQDELRVITPKNLFDIDIPDEGINYEELEKELIKKALIKS 422 Query: 418 GGNKTEAARQLGITRKTLLAKLSR 441 +AAR LG++ T +L + Sbjct: 423 NFVIAKAARLLGMSYDTFWYRLKK 446 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 624 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 180/462 (38%), Positives = 276/462 (59%), Gaps = 22/462 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILVVDDD S L L GY + A++G +AL++ R+ F+ V+ D+RM Sbjct: 1 MEMKEARILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M G+ LK IK ++P PV+++TAY +V TAVEA+K GA D+++KP ++++ ++ Sbjct: 61 GMGGMEVLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNV 120 Query: 121 LA--HTHSIDAETPAVTASQ--FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 +A P + ++ + + +L + VA S+++VLI G+SGTGKE Sbjct: 121 MATYEEKEFRESKPVEKMTFTDREIITEDEKILGILEFLKTVAQSKSSVLIQGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L AR ++ S+R P V +NCAA+ ++LLESE+FG EKGAFTGA +R+ G+F A+GGT Sbjct: 181 LFARYLYLHSSRRHMPFVAINCAAIPDNLLESEMFGFEKGAFTGAIQRKVGKFELANGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 L LDE+ +++P +Q +LLR IQE+E+ R+G + VDVR+IA T+ D+ + FR+ Sbjct: 241 LLLDEVTEMTPHLQAKLLRVIQEKEIDRLGGKMPLPVDVRIIATTNADVRKCIEEKTFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNV+ +++P LR+R+ D+ LL +FL++++ N K + F + L YDWPG Sbjct: 301 DLYYRLNVIPLKIPPLRERKGDVELLGSYFLKKYSNLNEKPLPVFANGTLKRLNAYDWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV------------- 403 N+RELEN +ERAV++ G + L L + P + + L Sbjct: 361 NVRELENVIERAVLVCGGNVVLPEHLYLEDQGSVSPAAEEKTSCSLEEVSTDISGIDLSR 420 Query: 404 -----EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 E+EKE+I + L+K GNKT A+ LGI+ +T+ KL Sbjct: 421 GMTIWEMEKELIFSTLDKVKGNKTRASEILGISVRTMRNKLQ 462 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 624 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 180/457 (39%), Positives = 279/457 (61%), Gaps = 17/457 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ D I+++DD+ ++ GY +ALE++ DL++ D++M Sbjct: 1 MSEDR-HIVIIDDEPDMLETCARVIHRMGYKCTTYEDSCEALEEIYRLQPDLIITDIKMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + DG L++ K P V+++T Y+SV++AV+A+K GA DYL KP + LQ T+ KA Sbjct: 60 QCDGFEVLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTINKA 119 Query: 121 LAHTHSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L H + Q G ++G +Q + I ++ S+A++LI G+SGTGK Sbjct: 120 LQHIALTEENQLLRAQLQEGLNTDNIIGARGGLQDVFETIGKISNSDASILILGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E++ARAIH +S RS P + ++CA+L E+LLESELFG+E+GAFTGA+ ++G A GG Sbjct: 180 EVIARAIHKNSRRSTGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLLEMAHGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDE+G+++P MQ +LLR ++ER ++RVG N++I++D+R++AAT+RDL + A FR Sbjct: 240 TLFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAIRAKEFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYR+NV+ +++P L +R++DIPLL HF ++F++ K V GFTP+AM + Y WP Sbjct: 300 EDLYYRINVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAMKSYAWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-----------PLVE 404 GNIREL N VERA+ L E + +LP + + Q+ L Sbjct: 360 GNIRELRNVVERAISLSGSEMVEISDLPEKVIGGQKKILPEQENLGAFSFHEAKDICLKR 419 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E E + L+K GN T+AA+ G+ RKT+ +++ Sbjct: 420 FEMEYLKELLDKHHGNITQAAKSAGMDRKTIHRLINK 456 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 624 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 192/450 (42%), Positives = 270/450 (60%), Gaps = 12/450 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT ILV+DD+ L LL G++V A+ G + + LV DV+MA Sbjct: 1 MTR---RILVIDDEPGIRQALGQLLEYEGFDVRTASGGAEGITLYDSFRPQLVFLDVKMA 57 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +DG+ LK ++ +P V++++ +++++TAVEA + GA D L KPLD D + L A Sbjct: 58 GLDGLEVLKRLRQADPNATVVMISGHATIQTAVEATQLGAYDILEKPLDTDRVLVLLRNA 117 Query: 121 LAHTHSIDAETPAVT--ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + + S++ +VG+S ++ LL I V + A VLI G++GTGKELV Sbjct: 118 FTNRQLTEENDRLRETIESRYEIVGRSFGIRSLLERIERVTGTPARVLITGENGTGKELV 177 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARAIH S R+ KP + +NCAA+ L+ESELFGH KG+FTGA R G+F +A GGTLF Sbjct: 178 ARAIHRGSQRARKPFIEVNCAAIPSELIESELFGHMKGSFTGAIADRAGKFEQAHGGTLF 237 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIGD+S Q ++LR +Q+ V R+G ++ + VDVR++AAT++DL E+ AGRFR+DL Sbjct: 238 LDEIGDMSQSAQAKVLRVLQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAAGRFREDL 297 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYRLNVV I VP+LR+RREDIPLL HFLQ+FAER+ + + +A+ L DWPGN+ Sbjct: 298 YYRLNVVPITVPALRERREDIPLLVRHFLQQFAERDGLPARSISDEALQRLSELDWPGNV 357 Query: 359 RELENAVERAVVLLTGEYISERE---LPLAIASTPIPLGQSQDIQPLVEV----EKEVIL 411 REL N +ER V+L + IS + L + P +G D E E+ +L Sbjct: 358 RELRNTMERLVILASAASISVADIDRLAGRRTAEPSGIGSLLDCNTFEEFKQAAERAFLL 417 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 A L N +E AR L + R L K+ R Sbjct: 418 AKLRAFDWNVSETARALDMPRSNLYKKIER 447 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 184/467 (39%), Positives = 275/467 (58%), Gaps = 28/467 (5%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ++ IL+VDD+ L +L GY V A SG +A+ ++ D+ L D+R+ + Sbjct: 1 MEHNRILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLPDA 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ L++ K + + V+++TA + V++AV ALK GA DY+ KP + + L+ ++KA Sbjct: 61 DGLDLLQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPFNMEALRHVIDKAFE 120 Query: 123 HTHSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEA-TVLIHGDSGTGKE 176 + + +VG S +M +L I + A ++A TVLI G+SGTGKE Sbjct: 121 KRQLREKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIKVCADTDAKTVLILGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARAIH SAR+E P +NCAA+ E+LLESELFGHEKGA+T A KRR+G F A+GGT Sbjct: 181 LVARAIHNHSARAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKRRKGIFELAEGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIGD+ MQ ++L+ I+ + +R+G+ + I DVR+IAATH+DL A V RFR Sbjct: 241 VFLDEIGDMPFSMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDLPAMVKERRFRG 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNV+ I +P LR+R +DIP L +F++R E + V+G +P+ M L Y WPG Sbjct: 301 DLFYRLNVMNIPLPPLRERTDDIPSLVQYFIERLNEEYGRRVEGVSPETMAYLTGYGWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIAST----------------------PIPLG 394 N+REL NA+ER ++L ++ L I + Sbjct: 361 NVRELRNAIERTMMLEHSRILTPVFLNAEIKQQYETAQNKSLHVDSHASAQHSFARGHIT 420 Query: 395 QSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L E+E+++I LE +GGN+T+AA+ L ++R TL ++ + Sbjct: 421 IPTGGISLEELERQLIRMGLEISGGNQTKAAKYLKMSRDTLRYRMKK 467 >UniRef50_P0AFB9 Nitrogen regulation protein NR(I) n=502 Tax=Bacteria RepID=NTRC_ECO57 Length = 469 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 191/464 (41%), Positives = 269/464 (57%), Gaps = 26/464 (5%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + VVDDD S +L+ L G G +G + LE + + D++L D+RM M Sbjct: 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+A LK+IK +P +PV+IMTA+S ++ AV A + GA DYL KP D D A +E+A++ Sbjct: 61 DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 Query: 123 HTHSIDA-ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 H + ++G++PAMQ + I ++ S +VLI+G+SGTGKELVA A Sbjct: 121 HYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHA 180 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S R++ P + LN AA+ + L+ESELFGHEKGAFTGA+ R+GRF +ADGGTLFLDE Sbjct: 181 LHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ +Q RLLR + + + RVG + VDVR+IAATH++L V G+FR+DL++R Sbjct: 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHR 300 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV+ + +P LR+RREDIP LA HFLQ A K P+ L WPGN+R+L Sbjct: 301 LNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQL 360 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ------------------------ 397 EN V+ G+ + ++LP + + + SQ Sbjct: 361 ENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQN 420 Query: 398 -DIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + E+E+ ++ AL T G+K EAAR LG R TL KL Sbjct: 421 LLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 622 bits (1606), Expect = e-177, Method: Composition-based stats. Identities = 187/440 (42%), Positives = 280/440 (63%), Gaps = 5/440 (1%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 T++ +LV DD+ S ++Q +L V A+ G +AL+ QV D L D+RM + Sbjct: 15 TNEKPVVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEALKVSEAQVVDCALVDIRMPK 74 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG+A L+++ + IPV+++TAY + + +EA++ GA D++ KP D D+L + KAL Sbjct: 75 VDGLAVLEQL--VLKNIPVIVITAYGTSDVTIEAMRRGAYDFITKPFDIDDLAEKVRKAL 132 Query: 122 AHTHSIDA-ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ + + + MVG S AMQ + I VA ++ TVLI G+SGTGKELV+R Sbjct: 133 DYSKTTEVLPIKGSKETSSLMVGMSAAMQEVYKLIGRVASTDVTVLITGESGTGKELVSR 192 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +S R++ P V +NCAA+ E LLESELFG+EKGAFTGAD+R+ G+F A+ GT+ LD Sbjct: 193 AIHYNSPRNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGADERKIGKFELANHGTILLD 252 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+SPM+Q ++LR +QE ++R+G + I VDVR++AAT++DL + V +G FR+DLY+ Sbjct: 253 EIGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAATNKDLQSLVKSGSFREDLYF 312 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV I++P LR+R+EDIPLLA HF++++A K V G TP+ M L+ YD+PGN+RE Sbjct: 313 RLNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGVTPEVMAALMAYDYPGNVRE 372 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 LEN + RAV L +G+ ++ LP + + L+E E+ A+ G + Sbjct: 373 LENIIARAVALCSGKVLTLDVLPPQVVEP--KPALRPLKEVLLEAERRAFRQAVAVAGLD 430 Query: 421 KTEAARQLGITRKTLLAKLS 440 A L + +L Sbjct: 431 PQAVADLLQVDLDYAKKRLK 450 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 621 bits (1604), Expect = e-176, Method: Composition-based stats. Identities = 185/455 (40%), Positives = 271/455 (59%), Gaps = 14/455 (3%) Query: 1 MTH--DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQV-REQVFDLVLCDV 57 MT + IL+ DDD +L + GY A G + L ++ ++ +DL++ DV Sbjct: 1 MTKATEQRHILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDV 60 Query: 58 RMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATL 117 RM DG+ L++++ PV++MTA+ + TA+ A++ GA DY+IKP D + + + Sbjct: 61 RMPGQDGLTILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVV 120 Query: 118 EKALAHTHSIDAETPAVTASQF---GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 ++ H S M+G SPAMQ + +I VA ++ATVLI G++GTG Sbjct: 121 KRLFDHQQLASKVRELEAKSFDPRDKMIGNSPAMQEIYKQIGRVAHTDATVLITGETGTG 180 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KE++A IH +SAR P+V +NCAAL ESLLESELFGHEKGAFTGA +R+GRF A Sbjct: 181 KEVLANLIHVNSARRNGPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHK 240 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 G++FLDEIG+++ Q +LLR +QERE +RVG + VDVR+IAAT+RDL A+V AG F Sbjct: 241 GSIFLDEIGEMTLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTF 300 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DLYYRLNV+ + +P+LRQR DIPLLA FL ++ + +AM+ L +YDW Sbjct: 301 REDLYYRLNVITLHLPALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMERLNNYDW 360 Query: 355 PGNIRELENAVERAVVLLTGEYISEREL--------PLAIASTPIPLGQSQDIQPLVEVE 406 PGN+R+LE+ +ERAV+L G I+ + L + +S + L +VE Sbjct: 361 PGNVRQLEHEIERAVILSRGNVITSEHMSLVPSSRSALQVDIAARLREKSTLEELLADVE 420 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + + AL + + AAR LG++ + + Sbjct: 421 RLALQEALVQHDDDLKVAARSLGLSEAEFQKRQKK 455 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 183/456 (40%), Positives = 273/456 (59%), Gaps = 21/456 (4%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +LV+DD+ + ++ +L + V +G ALE+++++ FDLV+ D++M + G+ Sbjct: 6 KLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISGME 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK IK + P +PV+ +T YSSV++AVE +K GA+DY+ KP + + +T+ AL Sbjct: 66 VLKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALEQRVV 125 Query: 127 IDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + + VGKS M + I VAP+++TVLI G+SGTGKELVARA Sbjct: 126 DLGDLYLLKELRDGEGFDRFVGKSHEMVKVYRRIMQVAPTDSTVLITGESGTGKELVARA 185 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R + P V ++C +L E+LLESELFGH KG+FTGA + G F A+GGTLFLDE Sbjct: 186 IHKHSQRRDHPFVAVDCTSLVENLLESELFGHVKGSFTGAMHTKTGLFKVAEGGTLFLDE 245 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 + ++S Q +LLR +QEREV +G Q +++RL+AAT+R L V G FR+DL++R Sbjct: 246 VSNLSLTTQAKLLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFREDLFFR 305 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LN++ +++P LR+R DIPLL GH ++ AE K +KG T AM +L Y +PGN+REL Sbjct: 306 LNIIPMDLPPLRERTGDIPLLVGHTVRTVAEEVGKDIKGVTAGAMQVLQSYSFPGNVREL 365 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPI----------------PLGQSQDIQPLVEV 405 EN +ERAVVL I+ +L L A++P + Q + ++ Sbjct: 366 ENIIERAVVLAEDSLITPDDLELNHAASPTVLLDYTAVPLSVEELKETKRHLREQAVEDI 425 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EK ++ AL++ GN T AA + G+ R A + + Sbjct: 426 EKAFVVNALQRNRGNITRAAEETGMLRPNFQAMMKK 461 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 193/464 (41%), Positives = 275/464 (59%), Gaps = 25/464 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M I IL+VDD+ + ++ L GY A S +ALE++ + DL+L D+R+ Sbjct: 1 MKPKGI-ILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++G+ +++IK +P +++MT Y SV++AVE ++ GA DYL KP D L++ +EKA Sbjct: 60 NINGVELIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEKA 119 Query: 121 LAHTHSIDAETPAVT-------ASQFGMVGKSPAMQHLLSEIALVAPSEAT-VLIHGDSG 172 L S ++G SP M+ + S I VA S +T VLI G+SG Sbjct: 120 LRRQGLRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESG 179 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKR-REGRFVE 231 TGKELVARA+H SAR V +NCAAL ESLLE+ELFG+EKGAFTGA + G F Sbjct: 180 TGKELVARAVHRLSARKSGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEI 239 Query: 232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNA 291 AD GT+FLDEIG++ ++Q +LLR +QER+ +RVG Q I +DVR+IA+T+R+L E+ + Sbjct: 240 ADKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIAS 299 Query: 292 GRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 G FR+DLYYRL V+ I VP LR+RREDI LL +F+ ++ K + P +L+ Sbjct: 300 GNFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILLE 359 Query: 352 YDWPGNIRELENAVERAVVLLTGEYISERELP---------LAIASTPIP------LGQS 396 Y WPGNIREL+N VER V++ G +S + + ++A + Sbjct: 360 YGWPGNIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNTDCVSSDG 419 Query: 397 QDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 D + L +EK+ I L++T +TEAAR LGI R TL K+ Sbjct: 420 LDARSLAFMEKQHIENVLKETSWRRTEAARVLGINRTTLYNKIK 463 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 208/482 (43%), Positives = 285/482 (59%), Gaps = 48/482 (9%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ + L L G+ V LA +GR ALE + +Q DLV+ D+RM EMDGI Sbjct: 4 KILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMDGIE 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH- 125 L++IKA P +PV+I+T Y++VETAVEA+K GA+DY++KP + + T+ K Sbjct: 64 MLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQRQG 123 Query: 126 ---------SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + A PA + Q ++G+ LL VA S+ATVL+ G+SGTGKE Sbjct: 124 EAALGSEGATPAAAVPAAASDQRTVIGRDAHFLRLLERARAVASSKATVLVLGESGTGKE 183 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 + AR IH S R P V LNCAAL E LLESELFGHEKGAFTGA ++G+F +A GGT Sbjct: 184 VFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMSKKGKFEQAHGGT 243 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 L LDEIG++ +Q +LLR +QE EV R+G + + VDV ++A T+RDL A V G FR+ Sbjct: 244 LLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVLATTNRDLGAAVREGNFRE 303 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNV+ I +P++R+R EDI LLA HF++++ R +K K + + + Y WPG Sbjct: 304 DLFYRLNVIPIRLPAMRERPEDISLLADHFIEKYTARYQKPAKKLSAASRQRFLEYQWPG 363 Query: 357 NIRELENAVERAVVLLTGEYISE-----RELPLAIA------------STPIPLGQS--- 396 N+RELEN VERAV+L G + ELP A A + P P+ + Sbjct: 364 NVRELENLVERAVLLSAGPELEPWDFWEDELPPAGAVTGATDPELAGSANPEPVAAADLA 423 Query: 397 ------------------QDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAK 438 L +VE+++IL AL +T N+T AA+ LGI+ +TL K Sbjct: 424 LAGSNTDAAASAAEIAIDPSRHSLWDVERQMILRALRQTSDNRTHAAKMLGISVRTLRNK 483 Query: 439 LS 440 L+ Sbjct: 484 LN 485 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 197/457 (43%), Positives = 285/457 (62%), Gaps = 17/457 (3%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + IL+ DD + + L G++V G +A+ R++ D+V+ D+RM Sbjct: 25 SPPMARILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDLRMVP 84 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DGI ++ ++ L+P VL+++A+ ++ AVEA++ GA+D++ KP D L+A +EK++ Sbjct: 85 VDGIEVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRARVEKSI 144 Query: 122 AHTHSIDA-----------ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGD 170 E G+VG S M+ +L ++ VA + ATVL+ G+ Sbjct: 145 EIARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVASTGATVLVLGE 204 Query: 171 SGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV 230 SGTGKELVARAIH +S R E+P V+++CAA+ E LLESELFGHEKGAFTGA +R+ GRF Sbjct: 205 SGTGKELVARAIHDASPRREQPFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRFE 264 Query: 231 EADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVN 290 A+GGTLFLDE+G+I +QV+LLR +QER+ +RVG + + VDVR+++AT+R+LA V Sbjct: 265 LANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMVE 324 Query: 291 AGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLI 350 +GRFR+DLYYRLNVV I +P LR R D+ LA F+ R A R +AV G P+A++LL Sbjct: 325 SGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALELLR 384 Query: 351 HYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPI------PLGQSQDIQPLVE 404 + WPGN+RELEN +E+A+V GE + R+LP + P P G L + Sbjct: 385 RHRWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRKAPPAPSLPVPSGDRSLTDILED 444 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +E+++ILAA EK G K E AR LGI L KL + Sbjct: 445 LERQLILAAYEKARGVKAETARLLGIKPSALYYKLEK 481 >UniRef50_A0LM32 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LM32_SYNFM Length = 450 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 201/446 (45%), Positives = 264/446 (59%), Gaps = 11/446 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT + +LVVDD+ L R GY A+ GR ALE V + +DLV D++M Sbjct: 1 MT-GRLKVLVVDDEKIVRESLVEWFRKSGYEADSADGGRSALEMVAGKDYDLVFLDIKMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++ G L IKA P V+++TAY SVETAV+A+K GA DYL+KP D D L LE+ Sbjct: 60 DVSGFEVLDRIKADCPYTLVVMITAYGSVETAVDAMKRGASDYLMKPFDPDELCCHLERL 119 Query: 121 LAHTHSIDAETPAVTASQFGM-----VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L +D GM +G S MQ L + I VA ++ +L+ G++GTGK Sbjct: 120 LQQKKIVDENAMLREHISSGMHCRELIGVSNCMQQLFALIEQVAQVDSPILLRGETGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E+VA+AIHA S R P V +NC A E+LLESELFGHE AFTGA + ++GR A GG Sbjct: 180 EMVAKAIHAMSERRGGPFVPINCGAFAETLLESELFGHESRAFTGAGRAKKGRLEMASGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDE+G+I MQ+ LLR ++E+ RVG ISVD RLI ATH+DLA E+ G FR Sbjct: 240 TLFLDEVGEIPLKMQIDLLRVLEEKAFTRVGGISEISVDFRLICATHKDLAMEIERGAFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 QD YYRLNV+ +E+P L R +DIP+LA FL+R + K V G Q ++ L Y WP Sbjct: 300 QDFYYRLNVIEVEIPPLHARIDDIPVLAQCFLERIGKETNKPVVGIRQQGIEFLKSYPWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALE 415 GN+RELENA+ERAVVL Y++ + S P Q L E EK+ + L Sbjct: 360 GNVRELENAIERAVVLAKERYLTRDDFAFLCRSPAQPFP-----QSLRENEKQHLERILS 414 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 G N ++AA L I+R TL +K+ + Sbjct: 415 FCGWNISKAAAILEISRVTLHSKIRK 440 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 197/467 (42%), Positives = 290/467 (62%), Gaps = 29/467 (6%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT +L++DD+ + L+ GY+V A++G +++++ +DLV+ D+RM Sbjct: 1 MTRS---VLIIDDEPLMRLSMLDALKAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMP 57 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 DG+ ++ K + V+++TA+ SV+TAV+A+K GA DY+ KP D L T+++A Sbjct: 58 GSDGLQVVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPMDELLMTVDRA 117 Query: 121 LAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 T + GMVGK+ M+ +L ++ LVA ++ATVLI G+SGTGK Sbjct: 118 TKVQALRQENTALRQELEGKFNFDGMVGKNERMRQVLEKVKLVATTDATVLIFGESGTGK 177 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E++A AIH +S R + L+ ++CAAL E+LLE+ELFGHE+GAFTGA K+R GRF A G Sbjct: 178 EVIANAIHRNSPRCGQALIKVSCAALPETLLEAELFGHERGAFTGALKQRLGRFELAHKG 237 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG+I+PM+QV+LLR +QE+ +RVG + I DVRL+ AT ++L EV AGRFR Sbjct: 238 TLFLDEIGEIAPMVQVKLLRVLQEKRFERVGGTETIGSDVRLVCATQKNLKEEVEAGRFR 297 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNVV + +P LR+R+EDI +LA H LQR R ++ +KGF+ A D+L+HY +P Sbjct: 298 EDLFYRLNVVQVALPPLRERKEDILVLAEHLLQRSTSRVQRVMKGFSVAARDVLLHYSFP 357 Query: 356 GNIRELENAVERAVVLL-TGEYISEREL--------------------PLAIASTPIPLG 394 GN+RELENA+ERAV L G+ I +L +++ Sbjct: 358 GNVRELENAIERAVALAQEGDEIQAWDLCGQTVCPFLGGPLQSGCGFCQEGVSNVTNARQ 417 Query: 395 QSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + E+E ILA LE+ G ++T A++ LG++RK L K R Sbjct: 418 TGTLAEVRERCEREYILAVLEREGWSRTAASKSLGLSRKALWEKCKR 464 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 192/450 (42%), Positives = 272/450 (60%), Gaps = 13/450 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV-FDLVLCDVRMAE 61 I + DD+ ++ LL G V SG+ L ++++ DL+L DV+M + Sbjct: 6 MSETRIFICDDEEGILKYMKKLLESQGLVVETFTSGKMLLARLQQGPNADLLLQDVKMPD 65 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 MDG+ L+E+K L P +PV+IMTA+ +++ AVEA+K GA DY+ KP + + LE L Sbjct: 66 MDGLQILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFPKEKILGVLENVL 125 Query: 122 AHTHSIDAETPAVTAS-----QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 +V S + + VA SEA +LI G+SGTGKE Sbjct: 126 ERELLRKENQQLKEELGKVTLTDAIVFASDRFREVYELTLEVAASEANILILGESGTGKE 185 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+A AIH S R + ++++NCAAL+++LLES+LFGH +GAFTGA ++G EAD GT Sbjct: 186 LIAGAIHRHSKRRGRRILSINCAALSDTLLESQLFGHVRGAFTGATTNQKGLLEEADSGT 245 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LF+DEIGD+S M+Q +LLR IQE + VG+ + VD+R +AAT+++L EV GRFR+ Sbjct: 246 LFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAATNKNLEKEVAEGRFRE 305 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNV++I +P LR+R+EDI LA HFL+++ +R K V FT +A+DL++ Y WPG Sbjct: 306 DLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVDRFTREALDLMLGYSWPG 365 Query: 357 NIRELENAVERAVVLLTGEYISERELP-------LAIASTPIPLGQSQDIQPLVEVEKEV 409 NIRELEN VERAV+L ++ LP A+ P S + L VE+E Sbjct: 366 NIRELENVVERAVILARSGVVTTDHLPMWKKNVASTAATGPASALSSHQLVSLENVEREH 425 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKL 439 I L +TG +K+ A LGI+RKTL K+ Sbjct: 426 IRQTLARTGFHKSRTAEILGISRKTLDRKI 455 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 619 bits (1599), Expect = e-176, Method: Composition-based stats. Identities = 191/458 (41%), Positives = 285/458 (62%), Gaps = 26/458 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ IL VDD+ S +L+ LR GY A GR+ALE + Q D V+ D+ M Sbjct: 1 MSDSTKYILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG+ LKE++ + +PV+I+TA + +A++A+K GA DY+++P D L+ +++A Sbjct: 61 RMDGLQLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFDLAELELAIKRA 120 Query: 121 LAHTHSIDAET--PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 L+ + + A G++G SPAMQHL I VAP +ATVL+ G++GTGKELV Sbjct: 121 LSFSRLVVENRFLREDKADTTGLIGNSPAMQHLAESIRQVAPEKATVLVAGETGTGKELV 180 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARAIHA+S R+ V +NCAA+ +LESELFGHEKGAFTGA K R G+F ADGGTLF Sbjct: 181 ARAIHAASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTGAVKERIGKFELADGGTLF 240 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDE+ ++ +Q +LLRA+QE ++R+G N+ I+VD+R++AAT+R+ + G+ R+DL Sbjct: 241 LDEVTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAATNRNPRDAIKDGKLREDL 300 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYRLNV I++P+L+ R+ DI LLA HFL K + QA+ +L+ YDWPGN+ Sbjct: 301 YYRLNVFRIDLPALKARKSDIELLATHFLA-------KRRVDISAQAVQVLMQYDWPGNV 353 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI-----------------QP 401 RELEN +ERA ++ + I + LP + ++ + + Sbjct: 354 RELENVLERAAIISGNQQIQPQHLPAEMLNSNGEFIDATALGHNADTAEAPQNPLCLPNA 413 Query: 402 LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 + ++E+++I AL +T GNK++AA+ L I+ ++L KL Sbjct: 414 VEQLERQLIAKALAQTNGNKSKAAKLLEISERSLWYKL 451 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 619 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 193/440 (43%), Positives = 266/440 (60%), Gaps = 5/440 (1%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + + +VDD+ C L L GY V S R LE + ++ FD+V D+R+ +MDG+ Sbjct: 4 LRVAIVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDMDGL 63 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L +IKAL P V+I+T Y S++TA+EA++ GA Y+ KP++F ++A +A Sbjct: 64 ELLPKIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIARRAQEKIG 123 Query: 126 SIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 A +VG SPA+Q L + + VAP + VLI G+SGTGK LVA Sbjct: 124 MRMENARLREALLGSSGLSSIVGNSPAIQDLFALVRKVAPVDCNVLIQGESGTGKALVAL 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H S R +P VT NC E L+ SELFG+EKGAFTGA + G A GGT+FLD Sbjct: 184 ALHHLSPRKNQPFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLLEAASGGTVFLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+G++ MQVRLL +QER + RVG + + +D+R+IAAT+RDL AEV G FR+DL++ Sbjct: 244 EVGEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEVEKGTFREDLFF 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV+ +P L RREDIPLL HF+ ++ RK+V+G QA+ L Y +PGN+RE Sbjct: 304 RLNVVSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDEQALAALQGYSFPGNVRE 363 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 LEN +ERAV L G+ I +LP I + + + L EVE+ ++ LEKTG N Sbjct: 364 LENIIERAVALTDGQTIGLLDLPEDIRNLEFATLEGDGLPTLAEVERRYVIRILEKTGYN 423 Query: 421 KTEAARQLGITRKTLLAKLS 440 K AA+ LG+ R TL KL Sbjct: 424 KRLAAQVLGVPRTTLWRKLK 443 >UniRef50_B4UAL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B4UAL8_ANASK Length = 461 Score = 618 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 200/457 (43%), Positives = 288/457 (63%), Gaps = 16/457 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILVVDD+ + L+ GY V A SG QALE V D++L DVR+ Sbjct: 1 MNSTPARILVVDDEKLIRWSVAERLQRGGYEVLSAESGEQALEMVAATPPDVMLLDVRLP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +DG+ TL+ +L+P + VL+M+A+S+V+ AVEA+K GA+D+L+KP F L +E+A Sbjct: 61 GIDGVQTLQRALSLHPEVAVLMMSAHSTVDIAVEAMKHGAIDFLVKPFPFQQLDEAVERA 120 Query: 121 LAHTHSIDAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEAT-VLIHGDSGTG 174 LA+ + + + +VG S AM+ + S I+ +A S+ T VLI G+SG+G Sbjct: 121 LANVRTRRQIATLTSDKRGASAVEAVVGSSAAMEQVRSMISRLAGSDTTTVLIEGESGSG 180 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KE+VARAIH SAR++KP++ +NCAAL E LLESELFGHE+GAFT A ++ G F A+G Sbjct: 181 KEVVARAIHFRSARADKPILQVNCAALPEHLLESELFGHERGAFTDAHAQKRGLFETAEG 240 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 G++ LDEIGD+ P Q +LLR ++ + +RVG Q + DVR+IAAT+ +L V GRF Sbjct: 241 GSVMLDEIGDLPPGGQAKLLRLLENKTFRRVGGVQELRADVRVIAATNVNLEERVAEGRF 300 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R DL++RLNVV I VP LR+ +D+P+L HF+ RF + ++ VKG P AM+LL Y W Sbjct: 301 RADLFFRLNVVRIVVPPLREHLDDVPILTAHFVARFDQEMKRQVKGVAPAAMELLRAYHW 360 Query: 355 PGNIRELENAVERAVVLLTG-EYISERELPLAIASTPIPLGQSQ---------DIQPLVE 404 PGN+REL N +ERA +L G + I LP + P G+ + L + Sbjct: 361 PGNVRELRNVIERAFILHAGADEIRPEHLPPELRKAAAPGGKRPEKLVPQVTGEGLVLDD 420 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 VE+++I A+E+ GN+++AAR LG++R TL +L + Sbjct: 421 VERKLIAEAMERASGNQSKAARLLGVSRDTLRYRLKK 457 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 618 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 198/468 (42%), Positives = 280/468 (59%), Gaps = 27/468 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M IL+VDDD + LL GY V A+SG + VRE V DLV+ DVRM Sbjct: 1 MDSRTAQILIVDDDHQLRQSFERLLAAEGYAVRTASSGEAGILAVREAVPDLVVMDVRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ ++ P +PV+IMTA+ + + A+EA K GA DY++KP D + +EKA Sbjct: 61 GISGLEAYAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEKA 120 Query: 121 LAHTHSIDAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 +A S+ + + ++G+S AMQ L I AP++ATVLI G+SGTGK Sbjct: 121 VAAGRSMRSRVAVGEEGEAAVAADAIIGRSQAMQDLYKAIGRAAPTDATVLIRGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARA++ S R++KP + +NC A+ E+LLESELFG+EKGAFTGA R+ G+ +A+ G Sbjct: 181 ELVARAVYQHSLRADKPFLVINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQANRG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDEIGD+ +Q ++LR +QE+ V+R+G Q+I VDVR+IAAT+RDL A V AG+FR Sbjct: 241 TVFLDEIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYRL VV + +P LR+R DIPLL +FL R++ + G + +AM LL WP Sbjct: 301 EDLYYRLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQPDPGVSDEAMALLTTQPWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIAST--PIPLGQSQDIQPLVEVEKE----- 408 GN+REL N V++A++ G + E+ A ++ L + Sbjct: 361 GNVRELGNTVKKALIFNLGAPLGPDEVQKASGEPLRGGGPAEADPGDSLARYVRRELASG 420 Query: 409 ---------------VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 VI ALE TGGN+++AAR LG++R TLLAK+ + Sbjct: 421 RESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRPTLLAKIEK 468 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 196/448 (43%), Positives = 272/448 (60%), Gaps = 13/448 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ + +LR G+ V +A++G L + + FDL+ CD+ + +DG+ Sbjct: 15 RILVVDDERGIRALCSDVLRRAGHEVEVADTGTAGLAAAKAKRFDLIFCDINLPGVDGLT 74 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L + V+++TA+ SVETAV +K GA DYL KP D L+ +AL+ Sbjct: 75 MLPSLLEREDPPTVILITAFPSVETAVRGMKLGARDYLTKPFTPDELRMVCRRALSEDAM 134 Query: 127 IDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 A +G +VG+SPAM L +A VA ++ VL+ G+SGTGKELVARA+H Sbjct: 135 RRENAELRHALAYGNLVGQSPAMLQLKKTVAKVAGADINVLVMGESGTGKELVARALHYQ 194 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 AR+ + V +NC AL +SLLESELFGH +GAFTGA++ + G F+ ADGGTLFLDEIG++ Sbjct: 195 GARAGRAFVPVNCGALVDSLLESELFGHVRGAFTGAEQAKRGLFLAADGGTLFLDEIGEL 254 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 +Q +LLRA+Q+ E++ VG + VDVR++AAT+RDL V G FR+DL+YRLNV+ Sbjct: 255 PLALQPKLLRALQDGEIKPVGGLEPQRVDVRVVAATNRDLQEAVAQGSFREDLFYRLNVI 314 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 IEVP+LR+RRED+P+LA HF A R R+A +P A++ L WPGN+R+LENA+ Sbjct: 315 TIEVPALRERREDVPVLAQHFAASAARRARRACPDISPAALEWLAAQPWPGNVRQLENAI 374 Query: 366 ERAVVLLTGEYISERELPL------------AIASTPIPLGQSQDIQPLVEVEKEVILAA 413 ERAVVL G + + T + D+ L E+E+ IL Sbjct: 375 ERAVVLAAGNTLGIEDFQPRAGVAGLAAESAPGRRTGGRGDSADDLLSLDELERLHILRV 434 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 LE GG KT+A+ LGI R TL KL + Sbjct: 435 LEACGGQKTKASAVLGINRTTLWKKLRQ 462 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 188/466 (40%), Positives = 264/466 (56%), Gaps = 28/466 (6%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ++ VVDDD S +L+ + G L+ + + D++L D+RM +M Sbjct: 1 MQKGNVWVVDDDSSIRWVLERAITREGMLCRAFEHANDVLKALNSEQPDVLLSDIRMPDM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG++ LK IK P +PV+IMTA+S ++ AV A + GA DYL KP D D A +E+A+ Sbjct: 61 DGLSLLKIIKEQYPTLPVIIMTAHSDLDAAVNAYQQGAFDYLPKPFDIDETLALIERAIT 120 Query: 123 HTHSIDAETPAVT--ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 H A S M+G++PAMQ + I ++ S +VLI+G+SGTGKELVA Sbjct: 121 HYREQKQPNNAENILQSVSDMIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELVAH 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H S R+ P + LN AA+ + L+ESELFGHEKGAFTGA + R+GRF +A+GG+LFLD Sbjct: 181 ALHRHSPRALAPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQANGGSLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ +Q RLLR + E + RVG + VDVR+IAATH+DL VN G FR+DLY+ Sbjct: 241 EIGDMPLDIQTRLLRVLAEGQFYRVGGYAPVKVDVRIIAATHQDLEKRVNEGDFREDLYH 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ I++P LR R EDIP LA +FLQ+ A+ K Q++ ++ Y W GN+R+ Sbjct: 301 RLNVIRIQLPPLRDRTEDIPSLARYFLQKTAKELGVETKSLHEQSLKTMMEYVWSGNVRQ 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI--------------------- 399 LEN V+ + I ++LP I + Sbjct: 361 LENVCRWLTVMTASQEIMPQDLPSEIRLADEKAKNINRLTSQHWSQHLSLWADEALGEGK 420 Query: 400 -----QPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L + E+ ++L+AL T G+K +AAR LG R TL KL Sbjct: 421 ENILNDALPQFERTLLLSALAYTQGHKQDAARLLGWGRNTLTRKLK 466 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 617 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 178/450 (39%), Positives = 275/450 (61%), Gaps = 11/450 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL+V+DD S ++ L GY + A++ +A + + LV+ D+ + M Sbjct: 1 MSSGRILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAFAILDKASQSLVMTDLHLPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ LK+++ P V++MTA+ +++TAVEA+K GA D+L KP+ L+ + + L Sbjct: 61 SGLELLKKVRLDYPETAVIVMTAFGTIQTAVEAMKAGAYDFLTKPIHPYELKMLVRRCLE 120 Query: 123 HTHSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 H I+ +VG S + L A VA ++AT+LI+G++GTGKEL Sbjct: 121 HHRLIEEVQVLRTALDEKYGFEAIVGSSSQLMRALDVAARVASTDATILIYGETGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VA+AIH S+R ++P +T+NC A+ + LLESELFGH KG+FTGA ++G+ ADGGT+ Sbjct: 181 VAKAIHLRSSRRDRPFITINCGAIPKELLESELFGHVKGSFTGALTHKKGKVEMADGGTV 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 LDEIG++ +QVR+LR IQERE+++VG+ VDVR++AATHR+LA V AG FR+D Sbjct: 241 LLDEIGEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAGMVKAGTFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRL VV I +P LR+R DI +L HFL++ ++ + + + +Y WPGN Sbjct: 301 LYYRLLVVPINLPPLRERTGDILILVQHFLEKCRMKHSRPNLMMSTDLLPYFTNYSWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIA------STPIPLGQSQDIQPLVEVEKEVIL 411 +R+LENAVER V+L I+ +LP ++ P+P+ + L ++EK++IL Sbjct: 361 VRQLENAVERLVLLARDSTINASDLPDFLSAAPAPPPEPVPVALPEGGINLEDLEKDLIL 420 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL+K GN+T AA+ L ++R+ +L + Sbjct: 421 QALKKYAGNQTRAAQYLNMSRRAFAYRLEK 450 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 617 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 190/447 (42%), Positives = 277/447 (61%), Gaps = 10/447 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +L+VDD+ C +L A L+ G+ A S +A E + + FD+V+ D+ M M G Sbjct: 2 TGRVLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFELLGVEDFDVVVTDMTMRGMSG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + + I P +PV+++TA+ S++TA A++ GA D++ KP + D L+ T+E+AL H Sbjct: 62 LDLCERIVQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRHR 121 Query: 125 HSIDAETP-----AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + A ++ SP M+ + + +A S+ ++LI G+SGTGKELVA Sbjct: 122 ALREEVRRLRRAVADARGYEQILSGSPVMRSVFDLLDRIADSDTSILITGESGTGKELVA 181 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RA+H S RSE V +NCAA+ ++LLESELFGH +GAFT A R G F A GGTLFL Sbjct: 182 RAVHQRSRRSEGAFVAVNCAAVPDALLESELFGHARGAFTDAKGARSGLFARAHGGTLFL 241 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++ +Q +LLRA+QER V+ VG+++ + VDVRLIAAT+RDL + RFR+DLY Sbjct: 242 DEIGELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDLETAIEERRFREDLY 301 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YR+NVV +++P LR R D+ LLA HFL+ FA + ++G + A + L+ Y WPGN+R Sbjct: 302 YRINVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARPIQGLSAPAAEKLMAYAWPGNVR 361 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTP-----IPLGQSQDIQPLVEVEKEVILAAL 414 EL+N +ERAV L ++I+ +LP I + + ++ P+ EVE+ IL L Sbjct: 362 ELQNCIERAVALARYDHITVDDLPEKIRTYRRSHVLVSSDDPTELVPMEEVERRYILRVL 421 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 E GGNK++AA+ LG R TL KL R Sbjct: 422 EVVGGNKSQAAQILGFDRATLYRKLER 448 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 617 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 185/451 (41%), Positives = 266/451 (58%), Gaps = 16/451 (3%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL++DD+ C +Q +L G G+ V A SG++A + V + DL L D+ + DGI Sbjct: 3 KILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLGSEDGIE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK +K +P + V+I+T Y SVE+AVE+L+ GA Y+ KP D L+ ++ AL Sbjct: 63 VLKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFKADALRLIVKLALKTQTL 122 Query: 127 IDAETPAVTAS-----QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + ++GKS A Q + +++ +A +TVLI G+SGTGKE+VARA Sbjct: 123 KREVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIARIPSTVLITGESGTGKEVVARA 182 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R E+ + +NCA++ LLESELFGHEKGAFTGA R++G F EA GT+FLDE Sbjct: 183 IHDLSDRKEQAFIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHHGTIFLDE 242 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ MQV+LLR +QER ++RVG+ + I +D R+IAAT+R+LA + FR+DL+YR Sbjct: 243 IGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSFREDLFYR 302 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV I +P LR+R DI LA +FL F+ + + +P+A L+ Y WPGN+REL Sbjct: 303 LNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYAWPGNVREL 362 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIP-----------LGQSQDIQPLVEVEKEVI 410 N +ER ++ +G + LP I ST P + + +EK +I Sbjct: 363 RNVIERICIMRSGPTLLPEHLPQEIRSTVAPPPLPAELPISIAADLGLEEAVSAIEKSLI 422 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 AL+KTG N + A L I R TL K+ + Sbjct: 423 QQALQKTGWNVLQTAANLKIPRGTLRYKMEK 453 >UniRef50_A8UUR2 Transcriptional regulator (NtrC family) protein n=2 Tax=Aquificaceae RepID=A8UUR2_9AQUI Length = 441 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 176/440 (40%), Positives = 263/440 (59%), Gaps = 9/440 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + +LVV+D+ +L LRG GY A +A E + E+ F +VL D+ + + +G+ Sbjct: 1 MRVLVVEDEKDFRELLTEHLRGLGYQTEGACDLEEAYEVLEERDFSVVLLDLFLPDGNGM 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 LK I+ + V+++T + +++TAVEA+K GA D+L KP ++ T++KA+ Sbjct: 61 ELLKWIRENSALTEVVVITGHGTIKTAVEAIKLGAYDFLTKPCSLKEVEITIKKAVESRG 120 Query: 126 SIDAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + G V +S AM+ ++ ++ +A S+ VLI G+SG GKE++A Sbjct: 121 IKRENLLYKKEKRLSLDYGGFVFESRAMKEVIEKVDRIACSDCPVLITGESGVGKEVIAS 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH +S R++KP+V LN A++ + L+E+ELFG+EKGAFTGAD +EG F ADG TLFLD Sbjct: 181 IIHRNSDRADKPMVALNIASIPKELIEAELFGYEKGAFTGADSGKEGFFELADGSTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++ +Q +LLRAI+ + R+G + I +VR+I AT+R L V G FR+DLYY Sbjct: 241 EIGEMDMSLQAKLLRAIETSKFYRIGGRREIESNVRIITATNRHLGELVRRGEFREDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV I +P LR+RREDI LA HFL F + K +KGFT +A + L Y W GN+RE Sbjct: 301 RLNVVEINIPPLRERREDILPLAYHFLDLFNRKYSKNIKGFTARAENSLTSYPWYGNVRE 360 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 L+N VERAV+ G+ I ++ + + + +VE+E I L++ N Sbjct: 361 LKNIVERAVLFSDGDRIDSEDISCLFTHQ----ESKKSFKTIKDVEREYITEILKQVNFN 416 Query: 421 KTEAARQLGITRKTLLAKLS 440 K +A+ LGI +TL KL Sbjct: 417 KRKASEILGIPLRTLYRKLE 436 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 191/449 (42%), Positives = 265/449 (59%), Gaps = 16/449 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL+ DDD + A L GY V A G+ AL+++ +V+ D+ M + Sbjct: 1 METPKILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKIELHEVQMVITDIMMPRV 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 +G+ +K++K++ P I + +A+++ E LK GA YL KP + + L+ +++ L Sbjct: 61 NGLEFIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLE 120 Query: 123 HTHSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 H + A ++G+S M L I VA S++TVLI G+SGTGKEL Sbjct: 121 HQALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVATSDSTVLIQGESGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH S RS+K V LNCAA+ + LLESELFGH KG+FTGA R GRF AD GTL Sbjct: 181 VARAIHDLSNRSDKNFVALNCAAIPDELLESELFGHVKGSFTGAVASRIGRFEMADKGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGD+ +QV+LLR +Q RE++ VGS + VDVR+IAAT+++L V + FR+D Sbjct: 241 FLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRL+V+ I +P LR+R D+PLL FL++F ++ V+GF Q M++L +YDWPGN Sbjct: 301 LYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRKVQGFDKQVMEILSNYDWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPL-----------VEVE 406 +RELEN VER V++ T IS +LP + L E E Sbjct: 361 VRELENLVERLVIIKTTGVISIHDLPEKYRGGRTTTVLHGEPMTLPDDGFCLNSAVEEFE 420 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTL 435 +IL ALEK+GGNK EAA L + R TL Sbjct: 421 NRLILQALEKSGGNKKEAAELLNLKRTTL 449 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 187/464 (40%), Positives = 276/464 (59%), Gaps = 29/464 (6%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL+VDDD LL+ GY+V +A SG LE VR++ FDLV+ DV+M M G+ Sbjct: 3 SILIVDDDDQLRQSFAKLLKEEGYSVDMAPSGEAGLEAVRDKAFDLVVLDVQMPGMSGLE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA---- 122 I+ ++ +PV++MTAY + ETA+EA K GA DY++KP D + + +AL Sbjct: 63 AFARIREIDATLPVVVMTAYGTTETAIEATKLGAFDYILKPFDIAGVLDLITQALEAGHM 122 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 ++ +A ++G SP MQ + I VA ++ATVLI G+SGTGKELVARAI Sbjct: 123 MRARVEMNVAPDSARPGAIIGSSPPMQEVYKAIGRVAQTDATVLIRGESGTGKELVARAI 182 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 + S R+ KP + +NC AL E+LLESELFG+EKGAFTGA RR G+ +A+GGT+FLDEI Sbjct: 183 YQHSKRAGKPFLVINCVALPETLLESELFGYEKGAFTGAASRRIGKIEQANGGTVFLDEI 242 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+ +Q ++LR +QER ++ +G N I VDVR++AAT+R+L + FR+DLYYRL Sbjct: 243 GDMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEVFREDLYYRL 302 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 VV + +P LR R D+ LLA +F+ F++ + G T +A ++ H+ WPGN+REL Sbjct: 303 KVVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRHHPWPGNVRELA 362 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV----EVEKE---------- 408 NA++++++ G + ++ IA D + E +E Sbjct: 363 NALKKSLIFSRGYPVRPEDISQVIAGPDQAGPSVTDGSDMDRVVGEWAREMLTAGGDTAR 422 Query: 409 -----------VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +I AL+ T GN+++AA+ LG+ R TLL+K+ + Sbjct: 423 FDYLTDRLTAIIIREALQMTRGNRSQAAKLLGLARPTLLSKIDK 466 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 616 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 188/459 (40%), Positives = 272/459 (59%), Gaps = 18/459 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M +ILVVDD++S +L +L GY VA A G QAL + E FDLVLCDVR+ Sbjct: 1 MAGAKANILVVDDELSMRELLDVMLSREGYKVACAEDGTQALSMLGEMKFDLVLCDVRLG 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +M GI LK K N V++++AY++ E AV A+ GA D++ KPLD L+ T+ ++ Sbjct: 61 DMSGIDVLKAAKKANHDTVVIMISAYATTEVAVAAMNEGAYDFVPKPLDSAELKQTIIRS 120 Query: 121 L-----AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + +VG P M+H+ + + VA + +LI G+SGTGK Sbjct: 121 LSLRTVEQERQALDNSLEDHLYFERIVGSHPKMKHIYNMVRQVAQTRTRILITGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+ARAIH S R+ P V +NC + E+L+ESELFGH KG+FTGA ++G F A G Sbjct: 181 ELIARAIHEQSDRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDEIG++S +QV+LLR +Q+ ++VG + ISVD R+++AT+++L+ EV G FR Sbjct: 241 TIFLDEIGELSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV+ + VP LR+R+ DI +LA F+++F++ K V + A+D+L Y +P Sbjct: 301 EDLFYRLNVIELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIKLSSYALDMLEKYSFP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEV---------- 405 GN+RELEN +ER+V L T I L LA+ G L EV Sbjct: 361 GNVRELENLIERSVALSTTNIILPESLSLAVHKRRWIEGVPGRRFDLEEVTKGVALDEIL 420 Query: 406 ---EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E+ + ALE +GGNK AA LGI+ ++ +L + Sbjct: 421 ADIERAYLKKALESSGGNKNRAAELLGISFRSFRYRLDK 459 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 616 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 208/497 (41%), Positives = 284/497 (57%), Gaps = 57/497 (11%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILVVDD+ + L L GY V +A +GR ALE V + DLV+ D+RM Sbjct: 2 MGAMGRKILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMP 61 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDGIA L++I+A+ P +PV+I+T Y++VETAVEA+K GA+DY++KP + ++ T++K Sbjct: 62 EMDGIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKV 121 Query: 121 LAHTHSIDAETPAVT----------ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGD 170 + A PA ++G+ LL VA S+ATVL+ G+ Sbjct: 122 MRQQPRPAAVAPAAETGSPPPGRTDEGSRTVIGRDRHFLRLLERARTVASSKATVLVLGE 181 Query: 171 SGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV 230 SGTGKE+ AR IH S R P V LNCAAL E LLESELFGHEKGAFTGA ++G+F Sbjct: 182 SGTGKEVFARFIHHVSDRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMAKKGKFE 241 Query: 231 EADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVN 290 A GGTL LDEIG++ +Q +LLR +QE EV R+G + + VDV ++A T+RDLA V Sbjct: 242 LAHGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVVATTNRDLAEAVK 301 Query: 291 AGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLI 350 G FRQDLYYRLNV+ I +PSLR+R +DI LLA F+++ + R K +K + A + Sbjct: 302 DGTFRQDLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKHSRRYNKPLKKLSAAARQRFL 361 Query: 351 HYDWPGNIRELENAVERAVVLLTGEYISE-----RELPLAIASTPIPLGQSQDI------ 399 YDWPGN+RE+EN +ER V+L G+ + ELP A++ S Sbjct: 362 DYDWPGNVREMENLLERGVLLSNGDELELWDFWDDELPPEPAASAELPEPSGPADAEPVD 421 Query: 400 ------------------------------------QPLVEVEKEVILAALEKTGGNKTE 423 + L EVE+++IL AL +T N+T Sbjct: 422 AAEPEASPPTVATEAVAAEASGSPDSAATLDSALAGRSLREVERQMILQALRQTDDNRTH 481 Query: 424 AARQLGITRKTLLAKLS 440 AA+ LGI+ +TL KL+ Sbjct: 482 AAKMLGISVRTLRNKLN 498 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 616 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 183/438 (41%), Positives = 278/438 (63%), Gaps = 9/438 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL++DD+ S +++ +L G+ V A S +++L + ++ FDL++ D + + G+ Sbjct: 3 KILLIDDEESILKVIKTVLSEAGFEVLTAKSKKESLSLIEKEKFDLIISDFLLEDGTGLE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+ + + P LI+TAY S+ AVEA+K GA Y+ KP+D DNL ++ + Sbjct: 63 ILESFRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPIDIDNLIKIIDFYIKKQ-- 120 Query: 127 IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 E V G++GKS M+ L EI +V+ SE+++LI G+SGTGKELVA+AIH S Sbjct: 121 ---ENFDVEEEFEGIIGKSQKMKDLFKEIDVVSKSESSILIEGESGTGKELVAKAIHRRS 177 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 R+ +P + +NC+A+ L E+ELFGHEKG+FTGA R G+ A GTLFLDEIG++ Sbjct: 178 KRANQPFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELAGEGTLFLDEIGEMP 237 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 MQ +LLR +QERE RVG ++I + R+I+AT+R+L V FR+DL+YR+NV+ Sbjct: 238 LFMQAKLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENKEFREDLFYRINVIH 297 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 +++P LR+R+EDIPLL F+ +F++ N K V A+++L++YDWPGN+R+LEN +E Sbjct: 298 LKIPPLRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNYDWPGNVRQLENIIE 357 Query: 367 RAVVLLTGEYISERELPLAIASTPIPLGQ----SQDIQPLVEVEKEVILAALEKTGGNKT 422 RAVVL GE I+ LP I S + + + L ++EK +IL L++ N+T Sbjct: 358 RAVVLCQGEIITANHLPDRIKSNSQKISENIRSENNSLNLYDIEKNIILKVLQEENFNQT 417 Query: 423 EAARQLGITRKTLLAKLS 440 AA++LGI+RK L K+ Sbjct: 418 RAAQKLGISRKQLRTKMK 435 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 193/457 (42%), Positives = 284/457 (62%), Gaps = 22/457 (4%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD++S L+ LL GY V+ A+ G ALE + + +DL++ D+RM +G+ Sbjct: 3 RILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNGLE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L K + P +PV+++TA++S + AV A+K+GA DY+ KP D ++ + AL+ Sbjct: 63 LLVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALSSPQP 122 Query: 127 ID----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + A T G++G SP M+ + I+ VAP+ A VLI G+SGTGKELVARAI Sbjct: 123 LPAKPGESEVAATNEFEGIIGGSPEMRKIYDIISRVAPTRANVLIQGESGTGKELVARAI 182 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S S V + C+A+ ESL ESE+FGH KGAFTGA R G F +A+ GT FLDEI Sbjct: 183 HRLSPASGHEFVPIVCSAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLDEI 242 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G+++P++Q +LLR +QERE++RVG+ + + +R+I+AT++DL EV AGRFR+DL+YRL Sbjct: 243 GELTPIIQTKLLRVLQEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFYRL 302 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 VV I VP LR+R+ D+PLL HFL ++A K + + AM++L+ YD+PGN+RELE Sbjct: 303 AVVPIRVPPLRERKGDVPLLVDHFLAKYARLFNKDIHRISSYAMEVLLDYDFPGNVRELE 362 Query: 363 NAVERAVVLLTGEYISERELPLAI---ASTPIPLGQSQDIQ---------------PLVE 404 N +ER V + + I L L+ + P P G + D + L + Sbjct: 363 NIIERGVAMENSQIILPESLTLSGHRRSREPEPAGGTVDDKRQEIAEEVFSRGLEPTLAD 422 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +E+E+I+ ALEK G +KT AA L + ++L K+ + Sbjct: 423 LEREMIVNALEKAGNSKTRAAELLRTSFRSLRYKIKK 459 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 189/456 (41%), Positives = 264/456 (57%), Gaps = 32/456 (7%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL+VDD+ Q L + A SG +AL+ ++ Q D+++ D+RM + G+ Sbjct: 21 QSILIVDDEEDVFYSFQRFLEEFPVRTFSAKSGEEALKLLKTQAVDVIIMDIRMGKKSGL 80 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 TLKEI+ L P V+IMTAY + +TA+EA+K GA DY++KP + L++ + KAL + Sbjct: 81 ETLKEIRKLFPQQVVVIMTAYGTCQTAIEAMKMGAYDYILKPFNMIELKSVITKALEASK 140 Query: 126 SIDAE------TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 A + ++GKS MQ + I VAP+ ATVLI G+SG+GKELVA Sbjct: 141 LTKEVSSQAFPANAFDSRSLHIIGKSAPMQQVYKLIGQVAPTNATVLIVGESGSGKELVA 200 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAI+ S R+ KP + +NCAA+ E+LLESELFGHE+G+FTGA +R G+F + DGGT+FL Sbjct: 201 RAIYQYSLRANKPFIAINCAAIPENLLESELFGHERGSFTGAMAQRIGKFEQGDGGTVFL 260 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++ Q ++LR +QE E R+GSN+ I DVR+IAAT++DLAA V FR DL+ Sbjct: 261 DEIGEMPISTQAKILRVLQEGEFSRLGSNEPIKTDVRIIAATNKDLAAAVAKREFRADLF 320 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVV I +P LR+R EDIP L HFL + A + QAM L+ Y WPGNIR Sbjct: 321 YRLNVVKISLPPLRERVEDIPDLIDHFLAKHRRYLPNAPTCISSQAMRSLLAYHWPGNIR 380 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTP--------------------------IPL 393 ELEN ++RA+VL T I LP I + Sbjct: 381 ELENVIQRAMVLATSATIQNCHLPEEIQAAEKKKYFKEKSGKGGPAGGLDFLVQEIVGSD 440 Query: 394 GQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLG 429 + ++ L + + LE+ G++++A R LG Sbjct: 441 LRDHRLETLKSLLHRIYTQVLEECEGDESKAKRILG 476 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 205/475 (43%), Positives = 292/475 (61%), Gaps = 39/475 (8%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL+VDD++ Q LL G G++V A++G Q ++ VRE++ +LV+ DVRM MDG+ Sbjct: 2 AKILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDGL 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L+ I+ ++ +PV+IMTAYS+ ETA+EA K GA DY++KP + ++ A +E+A+ Sbjct: 62 TALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVEAGR 121 Query: 126 SIDAETPAVTASQFG---------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + A V G +VG S AM + I AP++A VL+ G+SGTGKE Sbjct: 122 RMRARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGRAAPTDALVLVRGESGTGKE 181 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARA++ S R EKP + +NC A+ ++LLESELFG+EKGAFTGA RR G+ +A+GGT Sbjct: 182 LVARAVYQHSLRGEKPFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGKIEQANGGT 241 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIGD+ +Q +LLR +QE++++R+G Q I VDVR+IAAT+ DL A V GRFR+ Sbjct: 242 VFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAAVADGRFRE 301 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRL VV + +P LR+R EDIP LA +FL RF+ G TP+A+ L WPG Sbjct: 302 DLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAYLEAQPWPG 361 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI---------QPLVEVEK 407 N+REL N+V +A+V G + E +L A+ ++ S+ Q + E+ + Sbjct: 362 NVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACDLSLAADQTMQELIR 421 Query: 408 E---------------------VILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 V+ AL TGGN+T AAR LG++R TLLAK+ + Sbjct: 422 RTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSRPTLLAKIEK 476 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 184/456 (40%), Positives = 266/456 (58%), Gaps = 17/456 (3%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + +L+V+D+ T L L+ W Y A G +ALE+VR +V+ D++M Sbjct: 21 SMSQEKVLIVEDEPHALTGLAELVSAWDYRTETARDGIEALEKVRGWQPAIVVTDLKMPR 80 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQAT---LE 118 MDG+ L+ + ++ + V+++TA S+E+AVEA+K GA DYL KP+D L+ + Sbjct: 81 MDGMQLLERLNQMDGSRAVIVLTAQGSIESAVEAMKIGAFDYLQKPVDSVRLRTILSNVS 140 Query: 119 KALAHTHSIDAETPAVTA--SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + L + A + + MVG S M+ + S I VAP+ +VLI G+SGTGKE Sbjct: 141 RQLEMQREMAATRTRLRSMSGLGLMVGTSQPMKDVFSLIERVAPTNVSVLITGESGTGKE 200 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVA+ +H S R KP V +NCAA+ E+L+ESE+FGHEKGAFTGA +RR G F A+ GT Sbjct: 201 LVAKTLHELSPRKNKPFVAVNCAAIPETLIESEIFGHEKGAFTGAIERRAGCFELAEEGT 260 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 L LDEIG++ Q +LLR +++R +R+GS +DVR++AAT+++ V G R Sbjct: 261 LLLDEIGEMPIGTQAKLLRVLEDRRYRRLGSKVETPIDVRVLAATNKNPDQAVADGELRG 320 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNV I +P LR+ +EDIP +A + ++ +A++G + L+ YDWPG Sbjct: 321 DLYYRLNVFNIHMPPLREHKEDIPAIAQRMIADMTSKHDRAIEGMDDEMQARLLSYDWPG 380 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAI------------ASTPIPLGQSQDIQPLVE 404 N+REL N +ERAV+L TG+ + + LP A P Q + + E Sbjct: 381 NVRELRNTMERAVILCTGDRLQAQHLPPGFGTARPLKTAAVTAEPPANAVQVEVGTTVDE 440 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 E+ +IL LE T NKT AA LGI+ KTL KL Sbjct: 441 AERLLILKTLESTHNNKTRAAEILGISLKTLHNKLK 476 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 195/441 (44%), Positives = 267/441 (60%), Gaps = 18/441 (4%) Query: 19 TILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNPAI 78 + +L+ G+ V + + L ++ D+V+ D++M + G+ L+ IKA P + Sbjct: 20 KAVTQILQREGHPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRGIKADRPDV 79 Query: 79 PVLIMTAYSSVETAVEALKTGALDYLIKPL-DFDNLQATLEKALAHTHSID-----AETP 132 V++MTA+++VETAVEA+K GA DYL KP + D + T+ KA D E Sbjct: 80 EVIMMTAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALEEAL 139 Query: 133 AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKP 192 V + ++G+S M+ + + V+ S ATVLI G+SGTGKELVARAIH SAR +KP Sbjct: 140 TVRSQFEDLIGQSTQMRSVFKLVETVSHSTATVLIQGESGTGKELVARAIHYRSARKDKP 199 Query: 193 LVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVR 252 V +NC+AL E+LLESELFGH KG+FTGA ++G F ADGGT+FLDEIGD+ P QVR Sbjct: 200 FVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDVPPATQVR 259 Query: 253 LLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSL 312 LLR +QE EV+RVG+N+ + VDVR+IAATH DL+ G+FR+DL+YRLNV+ I++P L Sbjct: 260 LLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVITIDLPPL 319 Query: 313 RQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL 372 R R ED+PLLA HFL+ +A + K V G +P+AM+ L W GN+RELEN +ERAVVL Sbjct: 320 RDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTCNRWTGNVRELENVIERAVVLT 379 Query: 373 TGEYISERELPLAIASTPIPLGQ------------SQDIQPLVEVEKEVILAALEKTGGN 420 E I +LP S P P + E+ + A LEK N Sbjct: 380 GNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLAMRAFERRYLSALLEKNNQN 439 Query: 421 KTEAARQLGITRKTLLAKLSR 441 + AAR G+ R L + Sbjct: 440 VSSAARAAGVDRSNFRRLLKQ 460 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 192/463 (41%), Positives = 284/463 (61%), Gaps = 27/463 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M + IL+VDDD + + +R G +V +A G++ E+ + +DL++ D+RM Sbjct: 1 MDLTSKKILIVDDDDNMREAMLETVRRMGVSVEIATDGQEGFEKASKNAYDLIVSDMRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +DG+ + I++ P+ +TA+ +V AV+ALK GA DY++KP + ++ + + Sbjct: 61 NVDGMTMMNMIQSAGITTPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRV 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 L I+ PAV + + +S M L S VA SEATVLI G+SGTGKE+ AR Sbjct: 121 LE----IEETAPAVKRKKNTAIFRSAFMAQLFSLARDVAASEATVLITGESGTGKEVFAR 176 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH +S RS V +NCAAL E+L+ESELFG+EKGAFTGA R+ G+F ADGGT+ LD Sbjct: 177 YIHENSNRSSGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELADGGTILLD 236 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+G+I +Q +LLR +QE+EV+R+G + ++VR++A T++ L EV+ G FR+DLYY Sbjct: 237 ELGEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEGNFREDLYY 296 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV++IE+P LR+R+EDI LA F +++A+ N K T A+ L+ YDWPGN+RE Sbjct: 297 RLNVISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDYDWPGNVRE 356 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-------------------- 400 LE+ +ERAVVL ISER L L + + Q++ Sbjct: 357 LEHTIERAVVLCRDGVISERNLFLHGITINQFMTDKQELAAADSYTGCETTEDSVSAGID 416 Query: 401 ---PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + E+E+E+I+ L++TGGN+T+AA LGIT +TL KL+ Sbjct: 417 FAGTIAEMERELIIKTLKETGGNRTKAADMLGITVRTLRNKLN 459 >UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G7F8_GEOUR Length = 457 Score = 615 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 182/448 (40%), Positives = 263/448 (58%), Gaps = 9/448 (2%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 T ILV++DD +L L GY V A+ G + L++ R++VF++VL D+RM Sbjct: 6 TRKEAKILVIEDDKPLRELLHMELTRSGYKVESASDGEEGLDKYRQEVFNVVLLDMRMPG 65 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 MDG+ L++++ + V++ T + ++ETAVE +K GA DYL KP+ D L+ ++KA Sbjct: 66 MDGVEVLRQMRTESTIPEVIVFTGHGTIETAVECIKYGAYDYLTKPVKLDELEMVIDKAN 125 Query: 122 AHTHSIDAETPAV----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 Q +VGKS +Q +L + ++ VLI G+SG GKEL Sbjct: 126 EKNRLRLENINLKLEISKLDQHRIVGKSQVIQKVLETVRRWGATDEHVLICGESGAGKEL 185 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 ARA+H +S R+ KP VT+NC L+ + ESELFGH +GAFTGA+K R G F AD GTL Sbjct: 186 FARAVHDASRRANKPFVTVNCGRLSANTAESELFGHVQGAFTGANKGRAGLFELADTGTL 245 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 F+DEI ++ +QV+LLR ++ +R+G N ISVDVR + A+++ L VN G FR+D Sbjct: 246 FMDEISEMPLDVQVKLLRILETGTFRRMGGNHDISVDVRFVFASNKKLEDCVNRGEFRED 305 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L++R+N++ I +P LR+R EDI L+ +FL + A + A + +AM L Y WPGN Sbjct: 306 LFHRINLLPINIPPLRERPEDIIPLSYYFL-KSANESGSANWEISEEAMAALCAYSWPGN 364 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ----PLVEVEKEVILAA 413 +REL N + RA +L T + IS LP + T + PL VE++ I Sbjct: 365 VRELRNTIRRASILATDQIISSDLLPFSPPKTAPSFAVTGLPDVLPLPLWVVERDYIQKV 424 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 LEK GNK++AA+ L I RKTL KL R Sbjct: 425 LEKLEGNKSKAAKVLEIDRKTLYTKLER 452 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 182/455 (40%), Positives = 266/455 (58%), Gaps = 17/455 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE- 61 + ILVVDD+ + +L L G+ V A SG +AL + ++ F L++ D+++ Sbjct: 1 MNRTKILVVDDEEGYRKVLYNALTERGFQVKTAASGEEALAEFKKNSFSLIVIDMKLPGS 60 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG+ L+ K +N +LIMTAY ++TAVEA++ GA +Y+ KP D + +E+ + Sbjct: 61 IDGLELLQRAKEMN-NASILIMTAYGGIDTAVEAMRRGAFNYITKPFSIDEIMLNIERMI 119 Query: 122 AHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 I+ + + ++G S +Q ++ I+ VA S ATVLI G+SGTGKE Sbjct: 120 EQNKIIEENNYLHSELEKAFGRKTIIGNSKEIQKVMDMISRVAFSSATVLITGESGTGKE 179 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARAIH + R K V +NCA L+E LLESELFGH +GAFTGA K ++G F EADGGT Sbjct: 180 LVARAIHFNGNRKHKKFVVINCATLSEHLLESELFGHVRGAFTGAIKDKKGLFEEADGGT 239 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LF+DEIGDI +Q ++LR +QE E +G +VDVR+IAAT++ L +V FR+ Sbjct: 240 LFMDEIGDIPTPVQAKILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLKKVRDKEFRE 299 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNV+ I++P LR+R+EDIPLL HF++++ ++ K +KG +P+ L Y WPG Sbjct: 300 DLYYRLNVINIKMPPLRERKEDIPLLIKHFIEKYNKKENKQIKGLSPETEMELYKYHWPG 359 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTP----------IPLGQSQDIQPLVEVE 406 N+RELENA+ERAV L I + + + + L Sbjct: 360 NVRELENAIERAVTLTNEPIIPLHVILPIVRKEDGNNMLLDDLLSHPYKEARKKALDVFN 419 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + ++ + K GN T AAR+ I R+ L L + Sbjct: 420 TKYVMNIINKNSGNVTNAARECKIERQYLQRMLKK 454 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 614 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 200/450 (44%), Positives = 279/450 (62%), Gaps = 17/450 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDD+ L + + G V A+ G + LE +R+ ++L D+ M G+ Sbjct: 18 VLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLLTDLMMPHTTGMDL 77 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 LK K + P V++MTAY +VETAV+A+K GA D++ KPL ++ ++ AL + Sbjct: 78 LKAAKTVAPETEVVLMTAYGTVETAVQAMKEGAYDFVTKPLKRAHVVRIVKNALEKQSLV 137 Query: 128 DAETPAV----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 ++G S A + + + APS+ATVL+ G+SGTGKEL+AR++H Sbjct: 138 VENRVLRAQLAEQRSRAVIGSSLAWRRTMDIVHQAAPSDATVLLLGESGTGKELLARSLH 197 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 SAR++KP + +NCAA+ ES+LE ELFG+EKGAFTGA REGRF A GGTLFLDE+G Sbjct: 198 EGSARADKPFIAINCAAIPESILEGELFGYEKGAFTGATSSREGRFEAASGGTLFLDEVG 257 Query: 244 DISPMMQVRLLRAIQEREVQRVGSN-QIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 ++ +QV+LLR +QE E++R+G + + +D+RLIAAT+ +LA V GRFR+DLYYRL Sbjct: 258 EMPRHVQVKLLRVLQEGEIERLGGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYRL 317 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV++I VP LR+RR+DIPLL HFLQ +A++N K + G T A+D L Y WPGN+RELE Sbjct: 318 NVISIAVPPLRERRDDIPLLVQHFLQVYADKNGKFMAGCTQDALDRLCRYAWPGNVRELE 377 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ------------PLVEVEKEVI 410 NAVERAVVL GE + E LP + S L ++ PL E+E VI Sbjct: 378 NAVERAVVLSRGEVLDEAALPFEVRSGEGALAEAAGAGDPGGALRFAVGTPLAEIEMAVI 437 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L T G+K AA+ LGI +T+ +L Sbjct: 438 HETLRHTKGDKRLAAKLLGIATRTIYRRLE 467 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 614 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 201/445 (45%), Positives = 290/445 (65%), Gaps = 7/445 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 +LVV+DD + L +LR GY +SG AL Q+ + FD+V+ D+++ M Sbjct: 1 MTKPKLLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G++ L+EIK N +I ++++TAYSS+++AV A+K GA +YL KP+D + L+ LEK Sbjct: 61 GGLSLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYLAKPVDVEELELVLEKLRE 120 Query: 123 HTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 + + +VG SP M + I VAPS A+VLI G++GTGKEL Sbjct: 121 KQQLVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VA AIH S R+ KP V L+CAAL+E +LESELFGHEKGAFTGA + R+GRF ADGGTL Sbjct: 181 VAHAIHYRSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDE+ ++S +QV+LLR +++ E +RVG + I VDVR IAAT+R+L EV+ GRFR+D Sbjct: 241 FLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRLNV+ I++P LR+R++DIP+L+ +F ++A++ +K +KGF P+A+ L+ + W GN Sbjct: 301 LFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPI--PLGQSQDIQPLVEVEKEVILAALE 415 IREL+N +ERA+VL + IS LP +I P+ + L E EKE+I L+ Sbjct: 361 IRELQNTIERAIVLCKSDTISVDHLPESIMPDNEYIPVIKIPIGTTLKEAEKEIIQRTLQ 420 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 T G+K AA+ LGI+ + + K Sbjct: 421 ITNGSKQSAAKILGISTRKIEYKTK 445 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 614 bits (1586), Expect = e-174, Method: Composition-based stats. Identities = 197/450 (43%), Positives = 280/450 (62%), Gaps = 10/450 (2%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + D +L+VDD+ S L+ LL+ G+ A+ GRQ +EQ++E D+VL DVRM + Sbjct: 6 SDDAPRVLIVDDETSILDSLRILLKTEGFVPFTAHGGRQGVEQLQELRPDIVLTDVRMPD 65 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 + G+ L + ++P +PV++MTA +++++AV+A+ GA Y+ KP D L A L +A Sbjct: 66 VSGVQVLSAARQVDPDVPVILMTAQATLQSAVQAVNEGAFYYIQKPFRNDELVAILRRAA 125 Query: 122 AHTHSIDAE-------TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 H + +G+S + +L VAP+++TVLI G+SGTG Sbjct: 126 EHRKLRAENQVLKQEIRRRERNASQRPIGRSKSWLEVLRLAETVAPTDSTVLITGESGTG 185 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KE+VAR IH SAR++ +++NC AL ESLLESELFGH KG+FTGA K + G F A+ Sbjct: 186 KEVVARYIHDLSARTDNGFMSINCGALPESLLESELFGHVKGSFTGAVKDKTGLFAAANH 245 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GT FLDEIG+ +P QV+LLRA+Q+REV VG+ + +SVD R++AAT+RDL E+ G F Sbjct: 246 GTFFLDEIGETTPSTQVKLLRALQQREVIPVGATESVSVDTRVLAATNRDLEEEIKRGGF 305 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R DL+YRLNV+A+ +P LRQR +DIP+LA FL R A + K A+D L+ Y W Sbjct: 306 RADLFYRLNVIAVHLPPLRQRADDIPVLAESFLARSATLRHEEQKVLNEGALDALMAYGW 365 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAI---ASTPIPLGQSQDIQPLVEVEKEVIL 411 PGN+RELENA+ERAV+L +G IS LP + + P+ ++ L +E+ I Sbjct: 366 PGNVRELENALERAVILCSGNTISADALPERVTARRAEPLVSERAPVSPTLEAIERAYIQ 425 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L+ GGNK+ AA LGI TL KL+R Sbjct: 426 WVLQNEGGNKSRAADMLGIDPSTLYRKLAR 455 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 614 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 198/458 (43%), Positives = 282/458 (61%), Gaps = 23/458 (5%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +L+VDD+ LQ L Y+V+LA S +A + Q FD+++ D+RM G+ Sbjct: 3 PSVLIVDDEKHTREGLQQALVDS-YDVSLAASADEAFNLMDAQPFDVIVTDLRMPGKSGL 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 + + A VL+MTAY ++ETAVEA+K GA+D+L KP++ + L+ +++AL Sbjct: 62 KVIDKALAQPNRPAVLMMTAYGNIETAVEAMKRGAVDFLTKPVNIERLEVLIQRALKAKT 121 Query: 126 SIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 E S G++G SP + ++ + LVAPS AT+LI G+SGTGKEL+A+ Sbjct: 122 LEVEVKQLHERLDEKFSFEGIIGNSPKLHEVIDRVKLVAPSRATILIEGESGTGKELIAQ 181 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH SS+RS P + ++CAAL+E+LLESELFGHE+G+FTGA +RR GRF ADGGTLFLD Sbjct: 182 AIHQSSSRSRGPFLAVHCAALSENLLESELFGHERGSFTGATERRIGRFESADGGTLFLD 241 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG+IS QV+LLR ++ + ++RVG ++ I +DVRL+AAT+R L V G+FR+DL++ Sbjct: 242 EIGEISASTQVKLLRFLETKSIERVGGSKPIDLDVRLVAATNRTLEQLVRDGKFREDLFF 301 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV I +P LR+R ED+PLL GH++ F+E N P A+ L Y WPGNIRE Sbjct: 302 RLNVVRITMPPLRERAEDVPLLLGHYITAFSEENGVPPLTIEPGALATLQAYPWPGNIRE 361 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP-----------------LV 403 L N E AVVL G +SE +L + P + Sbjct: 362 LRNFCENAVVLRRGRSLSEYDLEPRYRDATLAGATGPAPTPGAPGSTVLGGAVPTSFSVE 421 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E EK ++ AL K+ GN+T+AA +GI+R+TL K+++ Sbjct: 422 ENEKRLLREALIKSRGNRTKAAELMGISRRTLHRKIAQ 459 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 205/457 (44%), Positives = 283/457 (61%), Gaps = 17/457 (3%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRM 59 + +LVVDD+ +L GY V +A R A+E +R+ F LVL D+ M Sbjct: 9 PQNATRVLVVDDEPGLRQVLHIAFHRQGYEVVVAPGARAAIEAIRQNPQPFPLVLTDLVM 68 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 + GI L KA + A V++MTA+S+VE+A++A++ GA D++ KP L A K Sbjct: 69 PDGSGIEVLTAAKARSNATEVIVMTAHSTVESALDAMRHGAYDFVTKPFSPAELTALAAK 128 Query: 120 ALAHT------HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGT 173 AL + + A+ + +G S AMQ + IA +AP+ TVL+ G+SGT Sbjct: 129 ALEKSSIVAENQRLRAQLERLDLPSREPLGTSAAMQRIAELIAKIAPTRTTVLLTGESGT 188 Query: 174 GKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD 233 GKE VARAIH S R+ +P + +NC AL E+L+ESELFGHEKG+FTGA R G F EAD Sbjct: 189 GKERVARAIHDQSDRAARPFLVVNCGALPEALMESELFGHEKGSFTGAGARSMGLFREAD 248 Query: 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR 293 GGTL LDEIG++ +QV+LLR +QER+V+ VG+ I+VDVR++AAT+RD+ AEV GR Sbjct: 249 GGTLLLDEIGELPAALQVKLLRVLQERKVRPVGAAAEIAVDVRVLAATNRDVEAEVRQGR 308 Query: 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 FRQDLYYRLNV+ IE+P LR+R DI LA FL+RFA K V+G T A+ L Y Sbjct: 309 FRQDLYYRLNVIRIELPPLRERPGDISRLAERFLRRFAAELGKDVRGLTTDAVRALDAYS 368 Query: 354 WPGNIRELENAVERAVVLLTGEYISERELPLAIAS---------TPIPLGQSQDIQPLVE 404 +PGN+RELEN +ERAV L G I +LP A+A +P + + E Sbjct: 369 FPGNVRELENMMERAVALAGGPTIGLGDLPSAVAGLSASPAPLLAQLPPEGCALDEVIGE 428 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 VE+ +IL ALE+TGG + AA+ LG++ ++L +L++ Sbjct: 429 VERRLILQALERTGGVRKAAAKLLGVSFRSLRYRLAK 465 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 613 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 193/448 (43%), Positives = 265/448 (59%), Gaps = 9/448 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 N IL+VDDD + LR V A S ++A+ ++R++ FD+VL D+R+ + Sbjct: 1 MKNSTILLVDDDRHLLESMALWLREQHVEVETAASCQEAIAKMRDRAFDIVLSDIRLDDG 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG L + P V+++T Y +V+TA+EAL+ GA D L KPL + L ++E+AL+ Sbjct: 61 DGFDVLAFSRKNRPEQSVILLTGYGTVDTAIEALRAGAFDLLTKPLIDEELLLSIERALS 120 Query: 123 HTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 ++ +VG MQ + + +A + ATVLI G+SGTGK L Sbjct: 121 QRKVVEENVQLKAQLDLRFGLENIVGHEHRMQKVFDMVERIADTRATVLITGESGTGKSL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 +ARAIH +R ++ V + C A+ ESLLESELFGH G+FTGA + G+F +AD GT+ Sbjct: 181 LARAIHRRGSRRDQAFVEVACGAMPESLLESELFGHAAGSFTGATGDKIGKFTQADKGTI 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG S +QV+LLR +QE E + VGS + VD R+I AT+ L V AGRFRQD Sbjct: 241 FLDEIGTASASLQVKLLRVLQELEFEPVGSTKTQRVDTRVILATNEKLEQAVAAGRFRQD 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYR+NV+ IEVP LR+R DIPLLA HFLQR E + K +GF+ + + Y+WPGN Sbjct: 301 LYYRVNVINIEVPPLRERIADIPLLANHFLQRTCEESGKRSQGFSDDVITAMQRYNWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPI----PLGQSQDIQPLVEVEKEVILAA 413 +REL+N VERAV+L G + +L AIAS I P+G + L E+ +IL Sbjct: 361 VRELQNVVERAVLLGRGPKVQVEDLTPAIASGQIVSIDPVGNKALKEALESPERAIILDV 420 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 LE N+ A LGI R TL K+ R Sbjct: 421 LEMHQWNRNATADALGINRTTLYKKMKR 448 >UniRef50_A3WKN3 Nitrogen regulation protein NRI (CHEY,AAA domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN3_9GAMM Length = 464 Score = 613 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 188/462 (40%), Positives = 269/462 (58%), Gaps = 24/462 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + ++DDD S +L GY V + + + +V D ++ D+RM Sbjct: 1 MSQAQ-HLWILDDDPSIRWVLHKAFERSGYQVQVFERADELTRALDSKVPDTIISDIRMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 DG+A LK+IK +P +P++IMTA+S ++TAV A K GA +YL KP D + + + KA Sbjct: 60 GTDGLALLKQIKQRDPDLPIVIMTAHSDLDTAVSAFKGGAFEYLAKPFDIEEARNVVAKA 119 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 +AH S + + ++G+S MQ + I ++ S +VLI G++GTGKE VAR Sbjct: 120 MAH-RSKPEVRVSAQQANNDIIGESAPMQDVFRAIGRLSASSVSVLITGETGTGKERVAR 178 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H S RS+KP + LN AA+ L+ESELFGHE+GAFTGADK+R+GRF++ADGGTLFLD Sbjct: 179 ALHKHSPRSDKPFIALNMAAIPADLVESELFGHERGAFTGADKKRDGRFLQADGGTLFLD 238 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ +Q RLLR + E + VG++Q + V+VR+IAATHRDL V FR+DLY+ Sbjct: 239 EIGDMPLSVQTRLLRVLAEGQFYPVGAHQPVQVNVRVIAATHRDLKEAVANNEFREDLYH 298 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ + +P+LR+R++DIPLLA +FL++ A + K + A+ L Y WPGN+R+ Sbjct: 299 RLNVIQLRLPALRERKQDIPLLARYFLKQSAIELEVSEKQLSDAALAQLEAYGWPGNVRQ 358 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE---------------- 404 LEN V+ + +S ELP + L Q E Sbjct: 359 LENVCRWLTVMAPAQQVSPDELPHELLEQSEQLENGQSTGNWRELLAHELRTQTHNYDNM 418 Query: 405 ------VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 VE+ + ALEK G+K +AA LG R TL KL Sbjct: 419 TPIIQDVERIALRIALEKCDGHKQKAAHWLGWGRNTLTRKLK 460 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 612 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 186/459 (40%), Positives = 282/459 (61%), Gaps = 19/459 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGW----GYNVALANSGRQALEQVREQVFDLVLCD 56 MT + + L+VDD+ + ++L+ + + A +G++AL++V++Q +DLVL D Sbjct: 1 MT-NKLHTLIVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEALDKVKQQQWDLVLMD 59 Query: 57 VRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQAT 116 V+M EM+G+ L IK +P V++MTA+S++ AV A+K GA DY+ KP+ L Sbjct: 60 VKMPEMNGLEALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEI 119 Query: 117 LEKALAHTHSIDA----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 + K+L I + + +VG S M+ + + I + + TVL+ G++G Sbjct: 120 VRKSLEARDLISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENG 179 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKELVARAIH +S R V +NC A+ E+L+ESELFGHEKGAFTGA +R+ G+F A Sbjct: 180 TGKELVARAIHFNSPRKSGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLA 239 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 + GTLFLDEIG++ P MQV+LLR +QER+ VGSN+ + R+IAAT+R+L + G Sbjct: 240 NNGTLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEG 299 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR+DL+YRLNV+ I +P LR+R +DI LAG+F+++F++++ + + TP+A+D+L Y Sbjct: 300 EFREDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLKSY 359 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ----PL------ 402 WPGNIRELEN +ER+ ++ I+ LP +I TP PL Sbjct: 360 RWPGNIRELENIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVGYSGPLDFDAFK 419 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E+EKE I++AL+ G + Q I + TLL K+ + Sbjct: 420 EEMEKEFIVSALKANNGRINQTVAQANIPKNTLLRKIRK 458 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 612 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 188/447 (42%), Positives = 269/447 (60%), Gaps = 14/447 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 D+ IL+ DDD + A L GY V A+ G+ ALE++ +V+ D+ M + Sbjct: 1 MDSARILIADDDKKTRDFVAAFLSYKGYQVFQASDGQDALEKIELNDVHMVITDIMMPRV 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 +G+ +K++KA+ P I + +A+++ E LK GA YL KP + + L+ +++ L Sbjct: 61 NGLEFIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHVKRGLE 120 Query: 123 HTHSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 H + + ++G+S M L I VA S++TVLI G+SGTGKEL Sbjct: 121 HQALQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAGSDSTVLIQGESGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH S R+ K V +NCAA+ + LLESELFGH KG+FTGA R GRF AD GTL Sbjct: 181 VARAIHDLSNRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGD+ P +QV+LLR +Q +E++ VG+ + VDVR+IAAT+++L V + FR+D Sbjct: 241 FLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHLVASKIFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRL+V+ I +P LR+R+ DIPLL +FL++F ++ V+ F MD+L ++DWPGN Sbjct: 301 LYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKNTMDILCNFDWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP---------LVEVEKE 408 +RELEN VER V+L I+ ++LP + P + + E + Sbjct: 361 VRELENLVERLVILKGSGTITFQDLPEKYRGIKSAPKSERLTLPDTGFCLNSAVEDFENQ 420 Query: 409 VILAALEKTGGNKTEAARQLGITRKTL 435 +IL ALEKTGGNK EAA L + R TL Sbjct: 421 LILQALEKTGGNKKEAATLLNLKRTTL 447 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 207/463 (44%), Positives = 283/463 (61%), Gaps = 25/463 (5%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 + +LVVDD+ + L+ALL GY+V +S A +++ + FD+ L D++M ++ Sbjct: 8 KPVRVLVVDDEPTLLRALEALLGQKGYSVVGLDSPIVATQRLAHEDFDVALLDIKMPQLS 67 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQA-TLEKALA 122 G+ L +K P + V++MT +++VETA+ A+++GA DYL KP + L A + KA Sbjct: 68 GLELLSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPFEDVELVARAVAKAAE 127 Query: 123 HTHSIDAETPAVTA-------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 D T + G+VG S ++ ++ I VA S TVL+ G+SGTGK Sbjct: 128 RKMLFDRNRRLETQLREKEGGAPEGLVGNSAPIREVVRMIEAVAYSATTVLVTGESGTGK 187 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARA+HA S R +P V LNC AL E+LLESELFGH KGAFTGA + ++G F ADGG Sbjct: 188 ELVARALHARSPRRAQPFVALNCGALTETLLESELFGHVKGAFTGAQRDQKGLFDAADGG 247 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDEIGDI P QVRLLR +QE E++RVGS + + VDVR+IAATHRDL V AG+FR Sbjct: 248 TIFLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGKFR 307 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV+ I +PSLR R +D+PLLA HFL+R+AER K V+ P A++LL Y WP Sbjct: 308 EDLFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALAPDAIELLCGYRWP 367 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI---------------- 399 GN+RELENA+ERAVVL GE ++ +LP A+ PL + Sbjct: 368 GNVRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLVREAPAGGDEAVWLTMSYATAK 427 Query: 400 -QPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 Q L EK + + N + AAR+ G+ R L + Sbjct: 428 EQSLRRFEKGYVETLMRHCDNNISAAARKAGMDRSNFKRVLRK 470 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 612 bits (1580), Expect = e-174, Method: Composition-based stats. Identities = 196/460 (42%), Positives = 288/460 (62%), Gaps = 22/460 (4%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL+VDD+I C L L+ + A++G++A++ + D++L DV+M M Sbjct: 1 MNKKKILIVDDEIHTCQGLARALKYE-WETFTASNGKEAIKIFEDNPVDIILTDVKMPGM 59 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 +GI L+++K + P P ++M+AY+ ET V+A+K GA D++ KP D+L L+ A+ Sbjct: 60 NGIELLRQLKNIRPETPAIVMSAYNETETVVDAVKAGAYDFITKPFRLDDLDGVLKTAVQ 119 Query: 123 HTHSID---------------AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLI 167 + S A+T + + ++ +S AM+++L + +AP+ ++VLI Sbjct: 120 ASPSFQLPSTKKATSAQLPAIAQTAKGSKNSPQIIYQSVAMENVLRTVQQIAPARSSVLI 179 Query: 168 HGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREG 227 G++GTGKE++A+AIHA+S RS+K + ++CAALN +L ESELFGHEKG+FTGA+++R G Sbjct: 180 TGETGTGKEVIAKAIHAASTRSKKAFIAVHCAALNANLFESELFGHEKGSFTGANEKRIG 239 Query: 228 RFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAA 287 RF ADGGTLFLDEIG+I QV+LLR ++ R +RVG N+ + D RLIAAT+RDL Sbjct: 240 RFEAADGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNETLYSDARLIAATNRDLRK 299 Query: 288 EVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMD 347 V AG FR+DLYYRL+V+ +E+P LR RREDIP L H+L N+ VKGFT AM Sbjct: 300 MVQAGEFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISSVTENQLNVKGFTADAMA 359 Query: 348 LLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAI------ASTPIPLGQSQDIQP 401 L YDWPGN+REL N VER VL EY+ LP + S + Sbjct: 360 RLCTYDWPGNVRELRNVVERMAVLSQQEYLDLPNLPDHVLLGEQQLSETAKIEDKDKALD 419 Query: 402 LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + E EK +IL AL+++ N+T AA +LG++R+TL +L + Sbjct: 420 VAENEKVLILKALKESNNNRTLAAERLGMSRRTLHRRLKQ 459 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 173/470 (36%), Positives = 258/470 (54%), Gaps = 32/470 (6%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + +VDDD + +L+ L + L + + D+++ D+ M + Sbjct: 1 MQKGKVWIVDDDSAIRWVLERALNNAHMECTSFEDIQSVLIALEKTCPDVLISDIHMPDN 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ L +K +P +P++IMTA+S + TAV A + GA DYL KP D D +++AL Sbjct: 61 DGLTLLTRLKQSHPKLPIIIMTAHSDLNTAVNAYQQGAFDYLPKPFDIDETILLVKRALN 120 Query: 123 HTHSIDAETPAVTASQ---FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + + T + + ++G++PAMQ + I ++ S +VLI+G+SGTGKEL+A Sbjct: 121 YYRNQQPNTRSNSPPTAAVSKIIGEAPAMQEVYRIIGRLSRSSISVLINGESGTGKELIA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 A+H S ++ P + LN AA+ + L+ESELFGHEKGAFTGA + R+GRF +A GG+LFL Sbjct: 181 DALHRHSPKATGPFIALNMAAIPKDLIESELFGHEKGAFTGASQVRQGRFEQAHGGSLFL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ +Q RLLR + E + RVG I VDVR+IAATH+ L V G+FR+DL+ Sbjct: 241 DEIGDMPLDIQTRLLRVLAEGQFYRVGGYTPIKVDVRIIAATHQCLEQLVQEGKFREDLF 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 +RLNV+ I +P LR+R EDIP LA +FL + A++ K PQ +L+ W GN+R Sbjct: 301 HRLNVIRIPLPPLRERTEDIPHLARYFLHQTAQQLGVESKILAPQTETILMSLPWSGNVR 360 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP------------------ 401 +LEN V+ + + I ++LP + L + Sbjct: 361 QLENVCSWLTVMSSSQMILPQDLPSDLQQNQQFLYSPKKTLATNNEKWLDPLANWTKTAL 420 Query: 402 -----------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L ++E+ ++ AL T G+K EAAR LG R TL KL Sbjct: 421 ENNKQNLLQQVLPQIERTMLECALTYTKGHKQEAARLLGWGRNTLTRKLK 470 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 171/448 (38%), Positives = 264/448 (58%), Gaps = 12/448 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL+VDD+ S L +L G+ V A +G +A++Q+ + DL+L D+ M MDG+ Sbjct: 3 PSILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMDGL 62 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 TLK+++ +P++PV+++T + ++ETAV+A K GA D++ KPL + + T+ AL Sbjct: 63 ETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNFRR 122 Query: 126 SIDAETPAVTA--SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + + + G SPA+ + ++I VAP+++ VLI G++GTGKE+VAR IH Sbjct: 123 LEEENLYLRKKALEKHSITGFSPAIMEVRNQINTVAPTDSWVLISGENGTGKEMVARTIH 182 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 SARS+ P+VT+NCA++++ +ESELFGHEKGAF GA +R+ GRF A+ GTLF DE+G Sbjct: 183 HLSARSDHPMVTVNCASISKKFMESELFGHEKGAFPGAKQRKRGRFELANQGTLFFDEVG 242 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+ Q R+LR ++ ++ QRVG + I+VDVR+IA+T+++L E+ G FR+DLYYRLN Sbjct: 243 DMDMETQSRILRVLENQKFQRVGGGRTITVDVRVIASTNKNLEEEIIKGAFREDLYYRLN 302 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRK-AVKGFTPQAMDLLIHYDWPGNIRELE 362 VV I +P L++R +DIP L F + FA + K + A++ L+ Y WPGN+REL Sbjct: 303 VVPIAMPPLKERAQDIPSLCEEFFREFAAADNLDEPKTISQNALEALMRYPWPGNVRELR 362 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV---------EVEKEVILAA 413 N VER V+ ++ R +P A Q + E I Sbjct: 363 NLVERLVISTKASHVDIRHIPPAYKDCAQEAIQDCGLDVFEVDSYKDAQKAFEIAYIQRQ 422 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 L K + A +G+ + + L + Sbjct: 423 LVKHDNDPDATAAAIGMDKSAIKKILKK 450 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 186/446 (41%), Positives = 272/446 (60%), Gaps = 9/446 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + +LVV+DD + +LQ L G+ V +A R +EQVR D+V+ D+RM ++ Sbjct: 16 REQFTVLVVEDDDAMRDVLQEELGDAGFRVQVAAGARAGIEQVRAGPVDMVITDLRMPDL 75 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG +++I A + P++++TA+ S++TA++A+K GA DY+ KP + D L ++KALA Sbjct: 76 DGFDLIRDINATDSPPPIIMVTAFGSIDTAIKAVKLGAHDYITKPFEIDELVLVIDKALA 135 Query: 123 HTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 ++ S M+ LLS ++ VA S A+VL+ G+SGTGKEL Sbjct: 136 ERALRRRVDRLQREVESRYGFDNIIAHSSEMRELLSLVSRVATSTASVLLTGESGTGKEL 195 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIH +S R+E V +N AA+ E+L+ESELFGH KGAFT A + + G F EADGGT+ Sbjct: 196 VARAIHYNSPRAEGAFVAVNLAAVPEALVESELFGHTKGAFTDARQSKAGLFNEADGGTI 255 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEI +++ +Q +LLRA+QE+E++ VG+ + VDVR++AAT+RDL + G FR+D Sbjct: 256 FLDEIAEMAAPLQAKLLRALQEQEIRPVGATRPQRVDVRVVAATNRDLQERMAEGDFRED 315 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAV-KGFTPQAMDLLIHYDWPG 356 LYYRLNV+ IE+P LR+R +DI LA HFL + R + +L Y WPG Sbjct: 316 LYYRLNVIQIELPPLRRRPDDILPLAEHFLALASARLTPPRSVRLAAETQRILHSYPWPG 375 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIP---LGQSQDIQPLVEVEKEVILAA 413 N+REL N +ER + L G+ I+ +LP + L ++E+E I Sbjct: 376 NVRELANVIERGLTLCRGDLIAPEDLPNHVRERKSNDFLSAAVARRMNLAQLEREFIERI 435 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKL 439 L++ GGNKT A++LG+ RKTL KL Sbjct: 436 LKEEGGNKTRTAQRLGLDRKTLYRKL 461 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 611 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 192/459 (41%), Positives = 275/459 (59%), Gaps = 24/459 (5%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +L++DD+ L++ L VA A + +Q L V + D V+ DVR+ +M G+ Sbjct: 2 PKVLIIDDEPGILYSLKSALERGDTAVATAATAKQGLATVARERPDAVILDVRLPDMSGL 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT- 124 I+ +P +PV+++TA+ S ETA+EA K GA +YL+KP+D L L +A Sbjct: 62 DAFLLIRETDPRLPVIVITAHGSTETAIEATKRGAFEYLLKPIDLHQLDEVLGRAFEMRL 121 Query: 125 ------HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 S DA P +A +VG+ PAM + I +AP + VLI G+SGTGKELV Sbjct: 122 AQVAPTASGDAPPPEDSADTEQIVGQCPAMLDVYKAIGRIAPQDVPVLILGESGTGKELV 181 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARA++ S RS+KP V +NCAA+ ++LLESELFGHEKGAFTGAD+RR G+F +A GGT+F Sbjct: 182 ARALYLHSPRSDKPFVAINCAAIPDALLESELFGHEKGAFTGADRRRVGKFEQAQGGTVF 241 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIGD+ P Q ++LR +Q++ +RVG N+ + DVR+IAAT+RDL+A V +FR+DL Sbjct: 242 LDEIGDMPPAAQAKMLRLLQDQRFERVGGNESVQTDVRVIAATNRDLSALVRDSKFREDL 301 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YRLN + +P LR R DI L HF+ + +K V+G A+ +L + WPGN+ Sbjct: 302 LYRLNSFTVTLPPLRDRTGDIEPLVSHFVTAANRKLKKNVRGVDAAALAVLESHRWPGNV 361 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPL---------------- 402 REL+NA+ AVV GE I+ LP ++ P G + ++ L Sbjct: 362 RELQNAMRYAVVQAVGEVITPDCLPASLRGAAAPPGDALELTALITSLLRVGATDIYRQV 421 Query: 403 -VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 V++ ++ A LE GN+ +AA +LGI+R TL AKL Sbjct: 422 THTVDRALLTAVLEHVHGNQKQAADRLGISRTTLRAKLQ 460 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 610 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 200/450 (44%), Positives = 269/450 (59%), Gaps = 10/450 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALL-RGWGYNVALANSGRQALEQVREQVFDLVLCDVRM 59 MT IL VDD+ ++C I + + V A SG +ALE+++ D+V+ D+ M Sbjct: 1 MTVAT-RILFVDDEPAYCRIFSKRIGADPRFRVETAGSGAEALERLQHSPADIVITDLSM 59 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 MDGI L EIK+L P I +LI+T+ S V+A+K GA DYL+KP DF+ ++ ++ Sbjct: 60 PLMDGIELLSEIKSLYPQIFILILTSDDSTSQVVKAMKAGAYDYLLKPFDFEMVERSIAT 119 Query: 120 ALAHTHSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 L+H ++ ++G+ M + I+ VA + ATVLI G+SGTG Sbjct: 120 ILSHKAAVQAGLCPECLSGEQYCFENLIGQDRKMFEIYEMISQVAQTSATVLITGESGTG 179 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KEL+A AIHA S R +KP + +NCAAL E L+ SELFGHEKGAFTGA R++G F +A G Sbjct: 180 KELIASAIHAKSTRKDKPFIQINCAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASG 239 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GTLFLDEIGDISP QV LLR ++ QRVG + I DVRLI AT+RDLAA +F Sbjct: 240 GTLFLDEIGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQF 299 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DLYYRLNVV+++ P LR RR DIPLL +FL+R+ N K + G T AM LL +YDW Sbjct: 300 REDLYYRLNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQIDGVTRDAMTLLCNYDW 359 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ---PLVEVEKEVIL 411 PGN REL N +E AV+ G + + LP I ++ L + E +I Sbjct: 360 PGNCRELANIIEHAVIFSRGRTLDKDSLPSQIRTSDRHSSGLTLNLATATLADAESALIK 419 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 LE++ N +AA L I R TL K+ + Sbjct: 420 KVLEESNWNLKKAAELLDIARGTLYGKMEK 449 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 610 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 184/446 (41%), Positives = 275/446 (61%), Gaps = 12/446 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL++DD+ S C+ LQ L Y + L + ++ D+VL D+++ ++DG+ Sbjct: 3 RILIIDDEPSICSSLQFALED-DYETEATTEVDKGLHIIEQEPIDVVLLDLKIGKVDGLE 61 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+EIK P V+++TAY ++ +V+A++ GA YL KP+ + L + LE+AL + Sbjct: 62 VLQEIKRKKPETIVIMITAYGTIANSVKAIRLGAYSYLTKPIHMEELFSVLEQALHYKKL 121 Query: 127 IDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + + GM+GKS AM + I V +++VLI G+SGTGKELVARA Sbjct: 122 NEQVAYLSQELEKKYGYEGMIGKSEAMTQVFHLIEKVKNVDSSVLITGESGTGKELVARA 181 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R ++ +NCAA+ E LLESELFG+EKGAFTGA R+EG+F A+ GT+FLDE Sbjct: 182 IHFSGKRKQEHFEVVNCAAIPEHLLESELFGYEKGAFTGAATRKEGKFQLANRGTIFLDE 241 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ +Q +LLR +Q++EV ++GSN+ +DVR+IAAT++ L +V G FR+DLY+R Sbjct: 242 IGDMPLALQAKLLRVLQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEGTFREDLYFR 301 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L+V+ I +P LR+R+ED+P L HFL F + K++KGF A L+ Y +PGNIREL Sbjct: 302 LHVIHIHLPPLRERQEDLPYLLQHFLHTFNQELGKSMKGFRSDAQRELLAYQYPGNIREL 361 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD------IQPLVEVEKEVILAALE 415 N VE ++V+ GEYI +LP+ I + + +PL E+EK+ ILA L+ Sbjct: 362 SNIVESSMVIADGEYIELEDLPMFIREKGEGFAKQKGSLDDYIGRPLKELEKDFILATLK 421 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 ++ + A LGI+ + L KL + Sbjct: 422 HNDNHRKKTAEMLGISERGLRDKLKQ 447 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 188/464 (40%), Positives = 268/464 (57%), Gaps = 29/464 (6%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILV DD+ L ++ R GY V++A S +AL DL L DV + E DG++ Sbjct: 3 HILVADDEAGIRETLSSIFRDEGYRVSVAASLDEALRIGEVDPPDLALVDVWLGEDDGLS 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+EI L V++M+ + +++TAV+ALK+GA DY+ KP D + AL Sbjct: 63 YLQEIARLPDPPAVVVMSGHGTIDTAVKALKSGAADYIEKPFSLDRVLTVAANALKLRGL 122 Query: 127 IDAETPAVT--ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 ++++ MVG SPA++ L +A VAP+E VLI G++GTGKELVAR++H Sbjct: 123 ERENRALREKVSARYEMVGDSPAIEALRELVARVAPTEGWVLITGENGTGKELVARSLHE 182 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 S R P V +NCAA+ E+L+ESELFGHEKGAFTGA RR G+F +A GG LFLDEIGD Sbjct: 183 GSVRRSGPFVDVNCAAIPETLIESELFGHEKGAFTGALSRRPGKFEQASGGVLFLDEIGD 242 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 ++ Q R+LR +QER++ R+G + I VDVR++AAT+RDL + FR+DL+YRLNV Sbjct: 243 MALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAATNRDLPGMIARKEFREDLFYRLNV 302 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 V+I VP LR+R DIP+L HF++ K F+ +A++ L WPGN+REL+N Sbjct: 303 VSIRVPPLRERLSDIPILVEHFVEILCRDFGHRPKLFSREALEALCERTWPGNVRELKNT 362 Query: 365 VERAVVLLTGEYISERELPLAIASTPIPLGQS-----------------------QDIQP 401 VER ++L G I R+L AI T ++ + P Sbjct: 363 VERLLILAPGPVIEVRDLEPAIPGTTDRGAEASRGETGEGRGGSPPDPGPGASGMEPDLP 422 Query: 402 LVE----VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L E E+ +L L + GN AA++LG+ R +L ++ + Sbjct: 423 LREARDRFERGYVLGVLARCEGNIARAAQRLGMDRTSLHRRIRQ 466 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 172/455 (37%), Positives = 268/455 (58%), Gaps = 16/455 (3%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 T IL+VDD+ + ++ +L+ ++ A +G L+++ L+ D+ M + Sbjct: 6 TMHTNSILIVDDEKAARYGMKKILQRDHGSIFEATNGIDVLQKIHTLQPALIFLDINMPQ 65 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG+ TL++I+ + V+I+TA+ S + AVEA+K GA DY+ KP + + L+ AL Sbjct: 66 LDGLKTLEKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYDYIAKPYEMEELRIITRNAL 125 Query: 122 AHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + T ++G+S MQ + I V ++ TVL+ G+SG+GKE Sbjct: 126 EKIALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKVVTADVTVLLQGESGSGKE 185 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L A IH S R P + +NCAA+ E+L+ESELFGHE+G+FTGA +RR G+F A+ GT Sbjct: 186 LAAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATERRMGKFEMANNGT 245 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 + LDEIGD+S Q +LLR +QE++ +R+G + ++VDVR+I+ATHRDL E+ GRFR+ Sbjct: 246 ILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRDLEEEIEEGRFRE 305 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYR+NVV I++P LR+R+EDIPLL F+Q F++++ K V + AM L Y+WPG Sbjct: 306 DLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVVSISNDAMKKLSAYNWPG 365 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP-----------LVEV 405 NIR+L+N +E A+VL + + +L I ++++ + Sbjct: 366 NIRQLKNTIESAIVLTNNDVLDISDLSEDIIREEKTPDSTKNVHYHLSFREAKKILIENF 425 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 EK+ I LE+ GGN + A L + R+ L K+ Sbjct: 426 EKDFISKKLEECGGNISHTAEALDMHRQNLQQKIK 460 >UniRef50_UPI00016C54BB two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C54BB Length = 463 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 184/452 (40%), Positives = 272/452 (60%), Gaps = 16/452 (3%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 +L+VDD++ L L G+ + A + +RE D++L D+ M D Sbjct: 8 PRGKLLIVDDEVELMRALCESLTDAGFEARGLSDPALAADALREGEPDVLLSDLMMPGTD 67 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 GI L+ +P + +IMT +++TAVEA+K GA DY++KP + L++A+ Sbjct: 68 GIQLLRRCLEADPHLVGIIMTGQGTIQTAVEAMKAGAFDYVLKPFRLQQVLPVLDRAMEV 127 Query: 124 THSIDAETPAVT--------ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + ++ +VG PA++ ++ I VAP+ ATVL+ G SGTGK Sbjct: 128 RRLRRENANLRRYVQRLTFESDRYRIVGSGPAVRKVVQLIEKVAPTTATVLVRGPSGTGK 187 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARA+H +SAR +KPLVT+NCA L E+LLESELFGHEKGAFTGAD+ + G F A+GG Sbjct: 188 ELVARAVHGNSARRDKPLVTVNCATLQETLLESELFGHEKGAFTGADRPKPGLFEVAEGG 247 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLF+DE+ +++P +Q +LLR +++ +RVGS Q DVR+IAAT++ L AE AGRFR Sbjct: 248 TLFVDEVAEMAPALQAKLLRVLEDGHYRRVGSTQEKRADVRIIAATNKPLEAEQKAGRFR 307 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL++RL+V+ +++P+L+ RRED+P L HFL + + P A LL YDWP Sbjct: 308 EDLFFRLSVITVDLPALKDRREDVPELIQHFL--HTRQVGRGPMTVDPAARSLLCRYDWP 365 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP------LVEVEKEV 409 GNIREL N +ERA +L G I+ +LP +A+ P ++ P L VE+ Sbjct: 366 GNIRELANVLERAQILAEGSVITPDDLPDNLAAGSGPPAAGEEPAPTTGPDDLDRVERHH 425 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + L + GGNK +AA+ LG++R+TL + + Sbjct: 426 VRDVLHRHGGNKVQAAKALGVSRRTLYRLIDK 457 >UniRef50_B8KA97 Luxo_vibha repressor protein luxo n=3 Tax=Vibrio RepID=B8KA97_VIBPA Length = 464 Score = 609 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 177/450 (39%), Positives = 259/450 (57%), Gaps = 11/450 (2%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + +L+V+D S + ++ L ++ + +GR A+E + + DL+L D+R+ + Sbjct: 7 NQNAKYLLMVEDTASVAALYRSYLTPLCIDINIVGTGRDAIESLNFRTPDLILLDLRLPD 66 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 M G+ L +K NP +PV+ MTA+ S++TAVEA++ GA D+LIKP + D L+ T+ AL Sbjct: 67 MTGMDVLYAVKKKNPDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAL 126 Query: 122 AHTHSIDAETPAV-TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E G +G S MQ + I A S+A++ I G+SGTGKE+ A Sbjct: 127 RKASKLKNEADYPGNQGYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAE 186 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIHA+S R +KP + +NCAA+ + L+ESELFGH KGAFTGA R+G ADGGTLFLD Sbjct: 187 AIHATSKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLD 246 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ ++ +Q +LLR IQ Q+VGS+++ SVDVR + AT+RD EV GRFR+DLYY Sbjct: 247 ELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVEEGRFREDLYY 306 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL V+ + +P LR+R +DI +A L ++ K +PQ +D Y+WPGN+R+ Sbjct: 307 RLYVIPLHLPPLRERGDDIIEIAYSLLGFMSKEEGKDFVRLSPQVVDRFASYEWPGNVRQ 366 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPI----------PLGQSQDIQPLVEVEKEVI 410 L+N + VVL G+ I LP + QDI PL EK I Sbjct: 367 LQNVLRNVVVLNNGKEIDLSMLPPPLNKPTENQIRVDLPVSDEFSVQDIFPLWLTEKRAI 426 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 A++ GN +AA L ++ T+ KL Sbjct: 427 EQAIKACDGNIPKAAGYLDVSPSTIYRKLQ 456 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 609 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 197/463 (42%), Positives = 276/463 (59%), Gaps = 25/463 (5%) Query: 1 MTHD-NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRM 59 M +L+VDDD + +L ALL G A G++AL + + D+V+ DVRM Sbjct: 1 MNESLRGTVLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVRM 60 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 MDG+ L E+ P +PV+++TA+ +V AVEA+K GA D+++KP D + + T+ K Sbjct: 61 PGMDGLQVLAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDREEILFTVRK 120 Query: 120 ALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 AL + E G +G+S AM + + +A A ATVL+ G+SGTGKEL A Sbjct: 121 AL--LRAQGEEARQQVRPTGGFIGRSRAMADVQAVLAKAAAGTATVLLRGESGTGKELAA 178 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 +A+H +S R + P V L+CAAL ++LLESELFG+EKGAFTGA R+ GR A GGTLFL Sbjct: 179 KAVHDASPRRDGPFVKLHCAALPDTLLESELFGYEKGAFTGAATRKPGRVELAHGGTLFL 238 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DE+GDISP +QV+LLR IQERE++R+G Q + VDVR +AATH+ L V GRFR+DL+ Sbjct: 239 DEVGDISPAVQVKLLRVIQERELERLGGTQTVKVDVRFVAATHQPLEERVKEGRFREDLF 298 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNVV + +P+LR+R +DI LA HFL+ A+ N + + L WPGN+R Sbjct: 299 YRLNVVPVWIPALRERPDDIEPLALHFLEVHAKTNGRPPFTLMTDGLAALRAQPWPGNVR 358 Query: 360 ELENAVERAVVLLTGEYIS----ERELPLAIASTPIPLGQSQDIQPLV------------ 403 +L+N +ER VVL + I +EL P P + + L Sbjct: 359 QLQNFLERLVVLSDTQVIGGREVLQELARQPGLAPAPFAATPSVSALEAPTVPVTDSART 418 Query: 404 ------EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 E+E++ + AL++ G N+T AAR LGI+R+TL KL Sbjct: 419 LESQRKEMERQAMADALKRAGDNRTLAARLLGISRRTLYNKLE 461 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 609 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 195/450 (43%), Positives = 276/450 (61%), Gaps = 10/450 (2%) Query: 1 MTHD--NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVR 58 M+ + +LV+DDD + + L G++ +A G+ + ++ ++ FD+VL D++ Sbjct: 1 MSAPAEPLQVLVIDDDKTLAETISESLDRRGHSCTVATGGKAGVAKLEQEAFDVVLTDLK 60 Query: 59 MAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE 118 MA++ G+ ++ K L P V ++T ++ V+TAVEA+K GA YL KPLD L+A +E Sbjct: 61 MADLHGLEVVERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAVIE 120 Query: 119 KALAHTHSIDAETPAVTA--SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + ++ + G+VG SP MQ +L + APS A+VLI G++GTGK+ Sbjct: 121 NSAKRVGTLRELRRQLDEKFGFEGVVGNSPKMQRVLQLLKAYAPSSASVLILGENGTGKD 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L ARA+H + R KP +NCA L ESLL+SE+FGHEKGAFTGAD++R GRF A GGT Sbjct: 181 LAARALHTNGPRRTKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQRVGRFEHAHGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIGD+ +Q +LLRA++ EV RVG+N+ + VDVR+IAAT++DL EV AGRFRQ Sbjct: 241 LFLDEIGDMPLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAGRFRQ 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLY+RL V +++P LR+ REDIP L HFL+ FA R+ K V P YDWPG Sbjct: 301 DLYFRLKVGTVKLPPLREHREDIPQLVSHFLKEFARRDNKPVPKVAPAVWKSFEGYDWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD------IQPLVEVEKEVI 410 N+REL N + +VL ++ + P P + +PL EVE+ I Sbjct: 361 NVRELRNLLASMMVLDLDGELTPDDFPEDPGVKPAGTAERPHGPDQLVGRPLDEVERYYI 420 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 AL+ TGGN+ EAAR L I+ +TL K+ Sbjct: 421 EKALDLTGGNREEAARLLNISERTLYRKIQ 450 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 609 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 178/453 (39%), Positives = 272/453 (60%), Gaps = 19/453 (4%) Query: 7 DILVVDDDISHCTILQALLRGW-GYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL+VDD+ ++L +L + + + Q E +++ +DLV+ D+RM DG+ Sbjct: 4 KILMVDDEQDMLSLLSRILSDRTDHEITSVDDPLQVTELLKKNDYDLVITDLRMPGRDGL 63 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 ++ +K NP V+IMTAY ++E+A+EA + GA DY+ KP + + +++AL Sbjct: 64 GVMEAVKQKNPNTAVIIMTAYGTIESAIEATRKGAFDYVTKPFRKERILHVVDQALKWQQ 123 Query: 126 SIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 T + ++G S AM+ L ++I VA + ATVLI G+SGTGKELVAR Sbjct: 124 LQKENTYLRERLEGKSQFASLIGSSRAMRTLHNQIDRVAKTSATVLITGESGTGKELVAR 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 +H S R ++ + LNC+ L ES++ESELFGH +G+FTGA + ++G EA+ GTLFLD Sbjct: 184 ELHKHSLRKDEQFIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLIEEANHGTLFLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+S MQV+LLR +QE E + +GSN I VD+R IAAT+++L ++ G FR+DL+Y Sbjct: 244 EIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRGEFREDLFY 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ I VP LR+R +DIPLL FL+++ + K +K +P ++ L+ DWPGN+RE Sbjct: 304 RLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNALMQRDWPGNVRE 363 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPI---PLGQSQDIQPL----------VEVEK 407 LEN +ER V++ +G + ++ L P PL DI + E + Sbjct: 364 LENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMPFKEAKDKLIEEFQS 423 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + I AL + GN ++AAR+ G+ R+ L + Sbjct: 424 QYISKALARHSGNVSQAARESGLKRQYLHRLMR 456 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 609 bits (1571), Expect = e-173, Method: Composition-based stats. Identities = 174/455 (38%), Positives = 263/455 (57%), Gaps = 16/455 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLR-GWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 +L+VDD+ +L+ L G V +A+SG +AL + + DL+L D++M E Sbjct: 1 MTKETLLIVDDEEDLLQLLKRSLEPDLGCEVKVASSGGEALNVLEREPVDLLLVDMKMPE 60 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 M+G+ L++++A P + V++MTA+ +E AV+A++ GA D++ KP D + L +L KAL Sbjct: 61 MNGLELLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNKAL 120 Query: 122 AHTHSIDAETPAVT-----ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + + + +VGKS MQ + I +VA ++ TVLI G+SGTGK+ Sbjct: 121 ERSRLLRENLNLQRHVQMHEAFQNLVGKSARMQRVYEAIQMVAKTDLTVLITGESGTGKD 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L RAIHA S R P V +NC A+ E++LESELFG+ KGAFT A + R G F EA GT Sbjct: 181 LACRAIHALSQRRSNPFVAVNCPAIPENILESELFGYRKGAFTHATQNRTGLFQEAHKGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 +FLDEIGDISP +Q +LLR +QE+ ++ +G + +SVDVR++A+T+RDL + G FR+ Sbjct: 241 IFLDEIGDISPNIQAKLLRVLQEKVIKPLGDTKSVSVDVRVVASTNRDLGDRIRRGEFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRLNV+ I +PSLR+R EDIPLL H +++ + K P+ ++ + WPG Sbjct: 301 DLFYRLNVLPIVMPSLRERPEDIPLLVNHLIEKHCAALNRPRKSVAPELTEIFLRAPWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERE----------LPLAIASTPIPLGQSQDIQPLVEVE 406 N+RELEN + R ++ + I + +P A + + + L Sbjct: 361 NVRELENVIVRGLLFAPRDEILPEDVGFHRPVKGRIPGKDAPSTNVPYKDAKEEALRGFH 420 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E L T GN + AA+ G+ R+ L L R Sbjct: 421 AEYFGGVLTATRGNVSHAAKLCGLERQALQQLLRR 455 >UniRef50_B4UGS2 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=B4UGS2_ANASK Length = 501 Score = 608 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 186/455 (40%), Positives = 264/455 (58%), Gaps = 15/455 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILVVDD+ + L+ +L GY V A S Q LE ++ + DL + D+R+ Sbjct: 23 MDPTKASILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLP 82 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG+ L + L +PV++++ ++ V+A+K GA D+ KP+D D + ++ A Sbjct: 83 GMDGLTLLSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNA 142 Query: 121 LAHTHS---IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 L+ + A + M+G+SPAM+ L +I VAP+ VL+ G+SGTGKEL Sbjct: 143 LSRRDLEGKVQALSARERRFSDDMLGESPAMRKLREDIGKVAPTSGRVLVLGESGTGKEL 202 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VA +H S R++ P V +NCAA+ L+ESELFGHEKG+F+GA RR G+F A GGTL Sbjct: 203 VAAEVHRQSRRADGPFVKVNCAAIPSELIESELFGHEKGSFSGAAARRRGQFEVAHGGTL 262 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGD+ Q ++LRA+Q EV RVGS + +VDVR+IAAT++DL EV G FR+D Sbjct: 263 FLDEIGDMGLSAQAKVLRALQTGEVVRVGSEKAFTVDVRIIAATNKDLEEEVRNGTFRED 322 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L++RLNVV + VP LR R +D+P+LA F Q N K P D L + WPGN Sbjct: 323 LFFRLNVVPLTVPPLRDRLDDVPVLAERFFQLATRENGLRPKPVDPAVYDRLRQHRWPGN 382 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-------PLVE----VE 406 +REL N ER V++ GE I+ ++P + P PL E VE Sbjct: 383 VRELRNVCERMVIMS-GERITAADVPETVGPRAAPPPPPGSADLSRYGEVPLKELRDLVE 441 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++ IL+ LE+ N T+AA+ LG+ R L K+ + Sbjct: 442 RDYILSRLEEHDWNITQAAQALGVERTNLHKKIKQ 476 >UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pilR n=65 Tax=Proteobacteria RepID=PILR_PSEAE Length = 445 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 190/445 (42%), Positives = 277/445 (62%), Gaps = 10/445 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 L+VDD+ +L+ L + A + ++A E + + FDL L D+R+ + Sbjct: 1 MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDG 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ ++ I+ +P PV ++TAY S++TA++ALK GA D+L KP+D L+ + AL Sbjct: 61 SGLDLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALR 120 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + E P ++G+SP M+ L ++I +A S+A V I G+SG+GKELVAR I Sbjct: 121 LRNPEAEEAPV----DNRLLGESPPMRALRNQIGKLARSQAPVYISGESGSGKELVARLI 176 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H R E+P V +NC A+ L+ESE FGH+KG+FTGA + ++G F A GGTLFLDE+ Sbjct: 177 HEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEV 236 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 D+ MQV+LLRAIQE+ V+ VG Q ++VDVR++ ATH+DLAAEV AGRFRQDLYYRL Sbjct: 237 ADLPMAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRL 296 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ + VP LR+RREDIPLLA L+R A T A + L +Y +PGN+RELE Sbjct: 297 NVIELRVPPLRERREDIPLLAERILKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELE 356 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP------LVEVEKEVILAALEK 416 N +ERA L + I +L LA A G + + L ++E+++I+ ALE+ Sbjct: 357 NMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLEDYLEDIERKLIMQALEE 416 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 T N+T AA++LG+T +++ +L + Sbjct: 417 TRWNRTAAAQRLGLTFRSMRYRLKK 441 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 191/501 (38%), Positives = 280/501 (55%), Gaps = 68/501 (13%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ-VFDLVLCDVRMAEMDGI 65 IL+VDDD L +L GY + A SG + +E+++ DL++CDVRM + GI Sbjct: 9 TILIVDDDEEIRYSLGRVLGSRGYQIETAASGEEGIEKIKGGLKPDLIMCDVRMGGISGI 68 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 TL+ +++ + ++ +++MTA+ + +TA+EA+K GA DY++KP D D + EKA++ + Sbjct: 69 ETLQHMRSASSSLQIVLMTAFGTAQTAIEAMKFGAYDYIMKPFDVDKVIEIAEKAISSSQ 128 Query: 126 SIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + + + G+VG SPAMQ + I VA S+ATVL+ G+SGTGKEL+A+ Sbjct: 129 DLKSANRYEKKVNYDDYKEGIVGNSPAMQEVFKVIGQVAASDATVLVTGESGTGKELIAK 188 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 I+ S RS P V +NCAA+ ++L+ESELFGHEKG+FTGA +R GRF + D GT+FLD Sbjct: 189 CIYQHSLRSGGPFVAVNCAAIPDNLIESELFGHEKGSFTGATTQRIGRFEQCDRGTIFLD 248 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD++ Q ++LR +QE E+QRVG + I VDVR+IAAT++DL V FR+DLYY Sbjct: 249 EIGDMALATQTKILRVLQEGEIQRVGGTETIKVDVRVIAATNKDLEKMVEDKEFREDLYY 308 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV I VPSL++R+ED+P + LQ + + V +P A++ L+ Y WPGN+RE Sbjct: 309 RLNVFRIRVPSLKERKEDVPDIVDFMLQNLVKEKKARVTRVSPDALNALVAYGWPGNVRE 368 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTP----------------------IPLGQSQD 398 L N V R+ V+ G+ I ++LP I P + + Sbjct: 369 LGNVVYRSAVVAQGDAILMKDLPDTIRGGRGEAPAAPVVSAASSQTSVAAPVEPQASAAE 428 Query: 399 IQPLVEV-----------------------------EKE------VIL-----AALEKTG 418 E E++ +I A+ +TG Sbjct: 429 TDSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIERAIGETG 488 Query: 419 GNKTEAARQLGITRKTLLAKL 439 GN+ AA LGITR TL +L Sbjct: 489 GNQARAAEILGITRNTLKKRL 509 >UniRef50_C1DXU0 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=8 Tax=Aquificales RepID=C1DXU0_SULAA Length = 451 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 166/445 (37%), Positives = 265/445 (59%), Gaps = 9/445 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 ++ILVVDD+ + +++ +L GY V S A + +++ +D++ DV + + +G+ Sbjct: 2 LNILVVDDEKNIQDLMKDILTDEGYYVGTTGSITTAKDFIKKNSYDVIFLDVWLPDGEGL 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L IK +P V++++ ++++ AV+A+K GA D+L KPL + + AT+EK Sbjct: 62 DLLPFIKENSPNSSVVMISGHANIPIAVKAIKEGAFDFLEKPLSTETIMATIEKVEKQIK 121 Query: 126 SID--AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 Q ++G SP + L +I VA + A V+I G++GTGKELVA++IH Sbjct: 122 VKQSLEYFKEKEEKQIEIIGNSPKIVELKRQIEKVAKTNAWVMILGENGTGKELVAKSIH 181 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S R + P V +NCAA+ + L E+E FG+EKGAFT A R+ G+ AD GTLFLDE+ Sbjct: 182 YQSPRKDYPFVDINCAAIPDELFEAEFFGYEKGAFTNAFTRKIGKLELADKGTLFLDEVA 241 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+S Q +LLR ++E++ R+GSN I+VD+R+I+AT++D+ EV G FRQDL +RL+ Sbjct: 242 DMSLSSQAKLLRVLEEKQFSRLGSNTKITVDLRVISATNKDIQKEVEKGTFRQDLAFRLS 301 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 V+ I VP LR+R EDI LLA +FL++F+ N+ + + + ++Y+WPGN+REL+N Sbjct: 302 VIPIYVPPLREREEDILLLANYFLRKFSVENKVEPPILSDEVKNTFLNYNWPGNVRELKN 361 Query: 364 AVERAVVLLTGEYISERELPLAI-------ASTPIPLGQSQDIQPLVEVEKEVILAALEK 416 +ER V+L + I ++LP + IP+ E+EK++I AL+ Sbjct: 362 LMERLVILNSESIIYNKDLPPHMLGNVKLEKEESIPITIRPLKDAKEELEKQMIKKALKV 421 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 N E A+ L I +L K+ + Sbjct: 422 YNNNLKEIAKALDIDLSSLYRKIKQ 446 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 607 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 176/450 (39%), Positives = 274/450 (60%), Gaps = 16/450 (3%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +++L+VDD+ + + + G++ A + QA + + D++L D+R+ + G+ Sbjct: 13 LNLLIVDDERVVREGCRDVAQTLGFSTFTAENAEQAYKILDSTSVDVILLDLRLPGIGGL 72 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L++IK P V+++T Y++V++AV+A+K GA DY+ KP + D L+ L++ H Sbjct: 73 EALRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYVTKPFNMDELRILLDRVTGHLK 132 Query: 126 SIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 GMVG++P M+ L I A S VLI G+SGTGKE+VAR Sbjct: 133 LTTENRMLREQVKARHGFGGMVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVVAR 192 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H + +KP + ++C +L +L+ESELFG+ KGAFTGA ++G ADGGT+FLD Sbjct: 193 AVHYTGCYKDKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQHSKQGLLAMADGGTVFLD 252 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++ +Q +LLRA+QE+E++ VG + + ++VR++AAT+RDL V G FR+DLY+ Sbjct: 253 EIGELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLYF 312 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ + +P LR R++DIPLL GHFL+R + + +A+ L++ YDWPGN+RE Sbjct: 313 RLNVLTLRIPPLRDRKQDIPLLVGHFLERTERATGFQ-RNISDEALKLMLTYDWPGNVRE 371 Query: 361 LENAVERAVVLLTGEYISERELPLAIA----------STPIPLGQSQDIQPLVEVEKEVI 410 LE+ ++RA L +G I+ +LP I + P + I P+ E+EK+ I Sbjct: 372 LEHCLDRACALTSGPTINTLDLPTTIQNWHVQTQTVLAPQAPAAPTNGIVPIAEMEKQAI 431 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L A+E+ G+K EAAR LGI + TL KL Sbjct: 432 LEAIERLHGDKLEAARLLGIGKTTLYRKLK 461 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 607 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 192/457 (42%), Positives = 283/457 (61%), Gaps = 17/457 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M IL+V+D+ ILQ L G++V + +A E + FDL L DVR+ Sbjct: 1 MKQSAF-ILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKFDLSLLDVRLP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + +GI ++E + +P + ++IMT Y+ V+TAV+A++ GA D+L KP D D + +++ Sbjct: 60 DGNGIELMREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDEL 119 Query: 121 LAHTHSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + E G++G+ PA+Q L ++L+A S++TVLI G+SG GK Sbjct: 120 IKTRQIKADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLANSDSTVLITGESGCGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E++A+A+H S +RS KPLV++NC A+ E LLESELFGH KGAFTGA + R GRF A+GG Sbjct: 180 EVLAKALHKSGSRSGKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDEIGD+S +QV+LLR +QER + VGS Q I VDVR+IAATHRDL AE+ AGRFR Sbjct: 240 TIFLDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYRLNV+ + +P LR+R +DI LL HF+ RF ++ + + G + + ++++Y WP Sbjct: 300 EDLYYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKRIILNYQWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQS-----------QDIQPLVE 404 GN+REL+N +ER L + +LP + S + QS + E Sbjct: 360 GNVRELQNLIERVTTLKRHGIMELEDLPSRMISDKERVLQSFRMDVENAECIDLKSTVDE 419 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E +IL+AL++ NK +AA L + R TL+ K+ + Sbjct: 420 FESHLILSALQRFQWNKNQAANFLAMNRTTLVEKIKK 456 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 607 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 195/472 (41%), Positives = 279/472 (59%), Gaps = 34/472 (7%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 IL+V+D++ +LQ++ + V AN+ +A Q++ + FDL++ D+R+ + Sbjct: 1 MSFEKILIVEDELVVRNLLQSIFQRHKLPVTCANNLAEATAQLQREQFDLMMLDIRLPDG 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG L+++ A+ V+++T Y SVE+AV ++ GA DY++KP + L+KA Sbjct: 61 DGQKFLEQVAAMPERPLVVMVTGYGSVESAVGCMRAGAFDYVLKPFSPSQIDVILKKAQT 120 Query: 123 HTHSIDAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + + + +VG+SPAM L I VAP++ATVLI G+SGTGKE+VA Sbjct: 121 YRQLLRVNRLLSDDPEDEEGILVGRSPAMIRLRQIIERVAPTDATVLITGESGTGKEMVA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 R + S R + + +NCAA++E+L+ESE FGHE+GAFTGA +RREGRF A GTL L Sbjct: 181 REFYRRSPRRSQAFIKVNCAAISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DE+ +I +Q +LLR +QERE +RVG ++ I V+VR+IA ++RDL V G FRQDLY Sbjct: 241 DEVSEIPANLQAKLLRVLQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLY 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNV + VP+LR+R EDI LLA HFL+RFA ++ V GF A LI Y WPGN+R Sbjct: 301 YRLNVFPVHVPALRERPEDIALLADHFLRRFARKHGVKVTGFADSARAALIGYRWPGNVR 360 Query: 360 ELENAVERAVVLLTGEY--------ISERELPLAIASTPIPLGQSQDIQP---------- 401 EL+N VERAV+L + LP + P P + + Sbjct: 361 ELQNTVERAVILSETGRAVTAAALGLPGDFLPGELPLEPAPAPEVPALPVAAVAEEPAGA 420 Query: 402 -------------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L E+EK+ I AAL +TGGN+T+AA +LGI+ +TL KL Sbjct: 421 SPTVTDSHGQVLKLDELEKQAIRAALRQTGGNRTQAAAELGISIRTLRNKLQ 472 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 607 bits (1567), Expect = e-172, Method: Composition-based stats. Identities = 184/445 (41%), Positives = 265/445 (59%), Gaps = 6/445 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ILVVDDD T+++A L G GY V LA G +AL +E+V+ + D++M EM Sbjct: 1 MAGEKILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKMEEM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ L+++ + P +PV+I+TAY ++ AVEA K GA D++ KP + +L LEKAL Sbjct: 61 DGMVLLEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYRLEKALE 120 Query: 123 HTHSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 ++ S MQ +L +++ +A +++TV ++G+SGTGKEL Sbjct: 121 VGSLRMEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAATDSTVCLYGESGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 +A+ +H +S RS P V +NC A+ E LLESELFGH KGAFTGAD+ ++G +A+ GTL Sbjct: 181 IAKVLHLTSTRSRGPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQQAERGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 F+DEI +++P +QV+LLR Q+ E VG Q + VD RL+AAT++DL + G+FR+D Sbjct: 241 FMDEIAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQDGKFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYR++V+ + +P LR+R EDIPLLA HFLQ F K + GF+P AM L+ + WPGN Sbjct: 301 LYYRIHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLMLHRWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQ-SQDIQPLVEVEKEVILAALEK 416 +REL N VERAVVL I L L + + E E+ ++ L Sbjct: 361 VRELANVVERAVVLAREGNICAEHLLLEREAVSDSGTELPPLTAARDEFERAYLIQVLHS 420 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 T GN + AA + G R L + Sbjct: 421 TKGNVSRAAAKAGRYRAEFYKLLRK 445 >UniRef50_Q1PXP1 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXP1_9BACT Length = 455 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 193/456 (42%), Positives = 279/456 (61%), Gaps = 18/456 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M++ IL+VDD+ L++ L+ GY+V+ ++ + + +R + FD+V+ D+R+ Sbjct: 1 MSN---KILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLP 57 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M+G+ LKEIK NP I V+IMTAY ++E+AV A K GA DY+ KP D L L++A Sbjct: 58 NMNGMELLKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRA 117 Query: 121 LAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L H ++ T +VG S AM+ L+ + ++ ++T+LI G+SGTGK Sbjct: 118 LQHKNTTAEVTRLRREIQSEFEFHNIVGSSHAMKKLIETVKEISDRDSTILIQGESGTGK 177 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E +A A+H S R P + ++CAALN +LESELFGHEKG+FTGA K R GRF A+GG Sbjct: 178 EKIAGAVHYHSGRKMGPFIRVSCAALNREILESELFGHEKGSFTGAIKTRRGRFELANGG 237 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 ++FLD++ DI MQV+LLR IQER +RVG + +S++VR+I AT +DL G FR Sbjct: 238 SIFLDDVDDIPLDMQVKLLRVIQERTFERVGGEKTLSINVRIICATKKDLLLLAKKGEFR 297 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNVV I +P LR+R++DIP L +FL++F R+ A+ G + + +++L+ Y+WP Sbjct: 298 EDLFYRLNVVPITIPPLRERKDDIPRLINYFLKKFVSRHEDALPGVSRETLNVLMEYNWP 357 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIP----------LGQSQDIQPLVEV 405 GN+RELEN +E AV I+ LP + I Q L EV Sbjct: 358 GNVRELENVIEHAVAFSHSHGITIDTLPDYLKRVEIHKKLISMDLSNTQTIQLHDVLTEV 417 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EK +I A +KT GN+ + A LGI R TL KL R Sbjct: 418 EKRLIEWAHQKTNGNQVKMAEILGIPRTTLRNKLVR 453 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 605 bits (1562), Expect = e-172, Method: Composition-based stats. Identities = 190/446 (42%), Positives = 276/446 (61%), Gaps = 8/446 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ IL+V+DD + ++L A+L GY + G+ AL+ ++ Q FDLVL D+R+ Sbjct: 1 MS-KTARILLVEDDATFRSLLAAILDDEGYELVEREDGKAALKTLQRQSFDLVLSDLRLP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPL-DFDNLQATLEK 119 ++G+ + +A A P +++TA+ +VE AV A+K G D+L KPL D L+ + + Sbjct: 60 GLNGLELFRRAQAEGIAPPFVLLTAFGTVEEAVAAMKEGVADFLTKPLKDPATLRVLVRR 119 Query: 120 AL-----AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 L + + E ++ AMQ + + IA VAP++ATVLI G+SGTG Sbjct: 120 TLAVSMQERSLQVLQERDTAGLPPDEVLFAGQAMQQVRTLIADVAPTQATVLISGESGTG 179 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KEL AR IH +S R + P V LNCAA+ E+LLESELFGHEKGAFTGA + R+G+F A G Sbjct: 180 KELAARMIHRASPRRDAPFVALNCAAIPETLLESELFGHEKGAFTGATQARQGKFELASG 239 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GTLFLDEIG++ +Q + LR +QER +RVG N+ + DVR+IAAT+RDL EV RF Sbjct: 240 GTLFLDEIGELPLALQSKFLRVLQERVFERVGGNRELRADVRIIAATNRDLEEEVRVRRF 299 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DLYYRL+V I +P+LR RR+ +P+L + L+R A + + V+ QA+ + Y W Sbjct: 300 REDLYYRLHVFPIHLPALRDRRDGLPVLVRYLLRRAAIQTGREVQDIEQQALAAVAEYGW 359 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAAL 414 PGNIREL+N +ERAV+L G+ ++ +LP + + L + E+ IL AL Sbjct: 360 PGNIRELQNVIERAVILCKGQ-VTLLDLPGGVRQVTASGVIPKSNGSLRDRERNDILDAL 418 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLS 440 G N+ AA +LGI+++TL +L Sbjct: 419 ATCGNNRRLAAEKLGISKRTLQYRLK 444 >UniRef50_B8GSV7 Response regulator receiver protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSV7_THISH Length = 455 Score = 605 bits (1562), Expect = e-172, Method: Composition-based stats. Identities = 194/448 (43%), Positives = 266/448 (59%), Gaps = 8/448 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + +I VDDD + G + V + +QAL EQ DL++ D+ M Sbjct: 1 MS-EAANIFFVDDDPRAGELFLRFCEGTPHQVHVFRDPQQALTAFIEQGADLIITDLAMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ L I+ ++ +PV+I+T YSSV+ A+EAL+ GA D++ KP D D L +E+ Sbjct: 60 GLSGMDLLSRIRDVDSDVPVIIITGYSSVDNAIEALRLGATDFIKKPYDTDELLLLIERT 119 Query: 121 LAHTHSIDAETPAVTASQF-----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + GMVG AM+ + I VA V+I G+SGTGK Sbjct: 120 LEGERLKRENRLLKRQLKDERLRYGMVGHGDAMESVYRLIDKVADIRCNVIIEGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARAIH ++KP V ++C A+N++LLESELFGHEKGAFTGA + G A GG Sbjct: 180 ELVARAIHTQGPDADKPFVVIDCGAINDTLLESELFGHEKGAFTGAAHTKAGLLETATGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDEI +IS MQV+LLR +QE++V RVGS + I +DVR IAAT+R+L A + AG FR Sbjct: 240 TVFLDEICNISDAMQVKLLRVVQEQQVMRVGSVRPIPIDVRFIAATNRNLEAMIEAGEFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 DLY+RLNVV I +P LR RREDIP L F++ FA+R + V+GF P A++ L YDWP Sbjct: 300 HDLYHRLNVVQIHMPPLRARREDIPPLVQAFVEEFAKRYHRQVEGFDPHALERLQTYDWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISER-ELPLAIASTPIPLGQSQDIQP-LVEVEKEVILAA 413 GN+REL N VER + L G + + P A++ QP L +E+ IL Sbjct: 360 GNVRELRNLVERTIALADGPVLHLDRQWPSTGAASTAAAQALDADQPDLATLERRYILKT 419 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 L++ GN+ + AR LGI + TL KL + Sbjct: 420 LQRLDGNREQTARALGINKSTLWRKLQQ 447 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 193/469 (41%), Positives = 280/469 (59%), Gaps = 30/469 (6%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL+VDD+ L+ WGY+V A++G L R + DLVL DVR+ +M Sbjct: 1 MPSEKILIVDDERLVRWSLRQKCEEWGYHVIEADNGSAGLRLARHESPDLVLLDVRLPDM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ LK++K A V+++TA +E ALK GA D++ KPLDFD L ++ AL Sbjct: 61 GGLEILKQLKENGDARAVIMITADPQLEDVKLALKLGAYDFVGKPLDFDELSVAVKNALE 120 Query: 123 HTHSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEAT-VLIHGDSGTGKE 176 T +VG S M L+ +A +A SEAT +L+ G+SGTGK+ Sbjct: 121 TTRLRTEVESLRGEVRRRHGYHDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGKD 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVA+AIH S R EKP V +NC+A+ E+L+E+ELFGHEKGAFT A ++G F ADGGT Sbjct: 181 LVAKAIHYQSRRQEKPFVAINCSAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAADGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIG++SP++Q +LLR ++++ ++RVG + + VDVR+IAA++RDL V G FRQ Sbjct: 241 LFLDEIGELSPLLQAKLLRVLEDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDGTFRQ 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRL ++++ +P LR R+EDI L F++R+ + +K+++G T LL+ +DWPG Sbjct: 301 DLYYRLAIISVFLPPLRDRKEDILPLVEFFIERYNRKFKKSIRGVTDNTRRLLMKHDWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIAS------------TPIPLGQ--------- 395 N+REL+NA+ERA++L E + LP A+A P P+ Q Sbjct: 361 NVRELKNAIERAMILDEAENLRPDYLPFAVAQQQAMYTAFESASPPAPIQQLPNGRSLPR 420 Query: 396 ---SQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + L EVE+ + A+++ GN+T AAR L I+R L KL + Sbjct: 421 LVIPEGGTSLEEVERAFVEMAMKEANGNQTHAARLLDISRDALRYKLKK 469 >UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZR73_OPITP Length = 452 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 188/447 (42%), Positives = 272/447 (60%), Gaps = 6/447 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ ILVVDD+ + C +Q L+ G+ V AN G AL + ++ ++LV+ D+RM Sbjct: 1 MSEPKARILVVDDERALCAGIQEALQREGHQVDAANDGASALRLLTQKAYNLVVTDIRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 E+DG+ LK +A ++MTA+ VETAVEA++ GA DYL KP+D L+A + KA Sbjct: 61 ELDGMQLLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPVDLKRLRAVVAKA 120 Query: 121 LAHTHSIDAE----TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 L + A ++G+S M+ +++ VA S+ TVLI G+SGTGKE Sbjct: 121 LELQTVVAENSELRQRLQRAEPGLLLGESEPMRKVVAMAEEVAQSDVTVLIEGESGTGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVAR IH SAR++KP + +NCAAL ESL+E+ELFGH KG+FTGA + GRF ADGGT Sbjct: 181 LVARLIHTRSARAKKPFIFVNCAALTESLVEAELFGHAKGSFTGAVADKLGRFHLADGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIGD+ Q LLR +++ + VG ++ V+VR+I AT++ L V AG+FR+ Sbjct: 241 LFLDEIGDLGAKGQGDLLRVLEDGAFRMVGGTELQRVNVRVITATNKRLQEAVAAGKFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL+YRL +V I VP LR+R EDIPLL FL+ F +++++ + + +A+ + + WPG Sbjct: 301 DLFYRLQIVPITVPPLRERAEDIPLLIDAFLEHFVQKHKRRRRRLSTEAVQVCRRFPWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLG--QSQDIQPLVEVEKEVILAAL 414 N+R+L N +ER VV + ELP + + + L E EK +I L Sbjct: 361 NVRQLRNVIERLVVTSPNAVVGVEELPDFLVAHDRSTNFFTVRVGMTLAEAEKLLIRQTL 420 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 + N+ EAA+ LGI+R+TL KL + Sbjct: 421 SQLTSNREEAAQALGISRRTLQYKLKQ 447 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 603 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 182/447 (40%), Positives = 276/447 (61%), Gaps = 8/447 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ N IL++DD+ H ++ GY +A SG+ L+ + + D+V+ D+ M Sbjct: 1 MSQYNTTILIIDDNEEHANATAEAIQKVGYKCIVATSGKAGLKIIETEEIDVVITDLIMH 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ LK K P ++++T Y +VETAV+A++ GA +L+KP++ ++L+A + K Sbjct: 61 DFSGMEILKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLRAEINKL 120 Query: 121 LAHTHSIDAETPAVTASQF-----GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + + + G++G S +MQ +L+ + ++ + ATVLI G+SGTGK Sbjct: 121 VEKQNLVRNNILLQKQLDEKYGLTGIIGNSASMQKVLTMVNQISGTNATVLITGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+A+ IH +S R PLV LN AA+ E++LESELFGHEKG+FTGA +R+G+F A G Sbjct: 181 ELIAKTIHNNSLRKHNPLVILNSAAIPENILESELFGHEKGSFTGALYQRKGKFEYAHRG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T FLDEIGD+ Q +LLR +++ + R+GSN+ I VDVRLIAAT+++L + G+FR Sbjct: 241 TFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQELGNLIKEGKFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLY+RLNV+ I++P LR+R EDIPLL F++ F+ K + TP+A +L+ Y WP Sbjct: 301 EDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKEILQITPEARKILLRYQWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI---QPLVEVEKEVILA 412 GNIREL+N +E VV+ T +Y+ +LP I + S + + + E E+I Sbjct: 361 GNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMPVSHGLMAGMTMEDAEIELIKC 420 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKL 439 L GGN+ EAAR LGI +TL KL Sbjct: 421 TLASVGGNREEAARMLGIGERTLYRKL 447 >UniRef50_C6MTS9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MTS9_9DELT Length = 465 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 185/449 (41%), Positives = 265/449 (59%), Gaps = 9/449 (2%) Query: 1 MTHDN-IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRM 59 M +LVV+DD + +LQ L GY V +A G L + R++ F++VL DV+M Sbjct: 4 MNKGKGAKVLVVEDDSALRELLQMELARSGYKVEVALDGEDGLRKYRDENFNVVLLDVKM 63 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 +DGI TL++++A +++ T + S+ETAVE +K GA DYL KP+ D L+ ++K Sbjct: 64 PGVDGIETLRQMRAETIVPEIIMFTGHGSIETAVECIKYGAYDYLTKPVKLDELEMVIDK 123 Query: 120 ALAHTHSIDAETPAV----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 A +VG+SPA+ +L + P+E VLI+G+SGTGK Sbjct: 124 AYEKNRLRLENINLKLEVSKLDNHRVVGRSPALMKVLDVVRRWGPAEEHVLIYGESGTGK 183 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL++RA+H +S R+EKP VT+NC LN + ESELFGH +GAFTGA+K R G F AD G Sbjct: 184 ELISRAVHDASPRAEKPFVTVNCGRLNINTAESELFGHTQGAFTGANKGRAGLFELADTG 243 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLF+DE+ + +QV+LLR ++ +R+G N ISVDVR + A++++L VN G FR Sbjct: 244 TLFMDEVSETPLDVQVKLLRVLETGTFRRMGGNHDISVDVRFVFASNKNLQECVNRGEFR 303 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLY+R+N++ I +P LR+R EDI LA F++ A R + T +AM L Y WP Sbjct: 304 EDLYHRINLLPINLPPLRERPEDILPLAYFFMKSAAGREDEN-WEITEEAMAALTAYSWP 362 Query: 356 GNIRELENAVERAVVLLTGEYISEREL---PLAIASTPIPLGQSQDIQPLVEVEKEVILA 412 GN+REL N + RA +L T + I+ L P + + PL VE++ I Sbjct: 363 GNVRELRNTIRRACILATDQQITSELLPFSPPRVLPPRQVSPAAPTQLPLWVVERDHIER 422 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 LE+ GNK+ AA+ L I RKTL KL R Sbjct: 423 VLEQVEGNKSRAAKILEIDRKTLYTKLER 451 >UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=B4ULA9_ANASK Length = 459 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 186/448 (41%), Positives = 273/448 (60%), Gaps = 9/448 (2%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + ++V+DD S +++ L Y+V S A+ V FD ++ D+RM Sbjct: 3 SAKKPSLMVIDDLDSARQMMKRTLARS-YDVYDFASVADAVPAVERADFDCIVTDLRMPG 61 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DGI L+ +A P IPV+++TA+++VETAVEA+K GA DYL KP + + L+ + +A+ Sbjct: 62 IDGIEGLRRFQAKVPEIPVILVTAFATVETAVEAMKAGAFDYLKKPFEPEELELVVARAV 121 Query: 122 AHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 H +A S G+VGKS AM+ L+S + +APS+ +LI G+SGTGK+ Sbjct: 122 EHARVKKENARLRSALAGQFSVHGIVGKSQAMKDLVSMLERIAPSDVPILIEGESGTGKD 181 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+ARA HA S+R++ P V LN +A+ E+L ESELFGHEKGAFTGAD+ R G F EA+GGT Sbjct: 182 LLARAAHALSSRAQGPYVALNMSAIPENLAESELFGHEKGAFTGADQPRAGFFAEAEGGT 241 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDE+G + P +Q +LLR +Q+ E VGS + +VR++AAT+ DL V G+FR+ Sbjct: 242 LFLDELGLLPPALQPKLLRVLQDGEFIPVGSRKPRKANVRVVAATNEDLQRRVKEGKFRE 301 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL++RL VV + +P LR+RREDIPLL H +Q+ A R + +AM L+ + WPG Sbjct: 302 DLWFRLRVVPLRLPPLRERREDIPLLVEHLVQKHALRLSRPPLQPDAEAMRALLDHPWPG 361 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI---QPLVEVEKEVILAA 413 NIRELE+A+ER ++L G+ I+ +LP + G + + + E+ + Sbjct: 362 NIRELEHAIERGLLLARGDAITLADLPPELTPPAEAAGGADEGRYRRARDAWERRFLEDV 421 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLSR 441 L + GG AA G+ R T KL+R Sbjct: 422 LREAGGQVARAAELSGLHRSTFYEKLAR 449 >UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZKW7_BREBN Length = 459 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 174/454 (38%), Positives = 267/454 (58%), Gaps = 18/454 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 H + IL+VDD+ +L + L+ GY A+ G A + V + ++L D++M M Sbjct: 2 HTDTRILIVDDEADFRHLLTSRLKRKGYTTLEASDGISAQKLVTSETIHVILLDLKMPGM 61 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG++ L+ K +PAI ++++T + ++ETA+EA+K GA DYL KP + + L+ + KA+ Sbjct: 62 DGLSFLQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPYNLNELEVLISKAVE 121 Query: 123 HTHSIDAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + A + F +V +SP ++ +L+ VA ++ VL+ G+SGTGK+ Sbjct: 122 KQQLTEENQQLREALSTNGKTTFQIVAESPKLKEVLATAKRVASTDFLVLLKGESGTGKD 181 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 ++AR I+ S R+ K V +N A+ E++LESELFGHEKGAFTGA +++G A GT Sbjct: 182 VIARLIYEYSERASKAFVPINLGAIPETMLESELFGHEKGAFTGATAQKKGLVEIAHQGT 241 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDE+GD+ +QV+LLR ++ E +R+GS + VDVR+IAAT+ DL +V G FR Sbjct: 242 LFLDEVGDLPFPLQVKLLRFLETGEFRRIGSPILHKVDVRIIAATNADLEKKVEEGTFRS 301 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLY+RL+V+ I +P L QR EDI L+ FL R + VK + +A L+ Y +PG Sbjct: 302 DLYFRLHVMDITIPPLTQRSEDILPLSAFFLNRLKRKY--PVKPLSVKAQAALLAYSFPG 359 Query: 357 NIRELENAVERAVVLLTGEYISEREL----------PLAIASTPIPLGQSQDIQPLVEVE 406 N+REL + +ERAVVL GE I +++L P T ++ L VE Sbjct: 360 NVRELAHMIERAVVLAKGEEIDDKDLFPHEQPVPSNPSDRKLTTSAETGEEEAFLLKNVE 419 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +E I L+ + NKT+ A +LGI+ + L K+ Sbjct: 420 REHIKHVLDVSQWNKTKTAEKLGISVRNLYRKIE 453 >UniRef50_B8FDW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDW1_DESAA Length = 477 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 184/469 (39%), Positives = 268/469 (57%), Gaps = 28/469 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILV+DD+ + C + +L Y + A +G +A+E + ++ FDLV+ D++M Sbjct: 1 MPEPKAKILVIDDEEAICRNCEKILTRSNYEIKWALNGYKAMEMMYKEAFDLVITDLKMN 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M G+ L +K P V+++T Y+SV +AVE +KTGA DYL KP D L+ + +A Sbjct: 61 SMGGLEVLSRVKDEWPQTQVVVITGYASVSSAVEVMKTGAFDYLPKPFTPDELRGAVRQA 120 Query: 121 LAHTHSIDAETP-----AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 LA + P + + +VG SP MQ ++ +A AP++ VLI+G+SGTGK Sbjct: 121 LAPEELFNNAKPDVKKISRKITTHQLVGDSPQMQGVIRMLAKAAPTDTNVLIYGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E++ARAIHA+S R + ++C AL E+LL+SELFGH KGAFTGA K ++G F ADGG Sbjct: 181 EVIARAIHANSRRKGEVFFAVDCGALAENLLQSELFGHTKGAFTGAVKDKKGIFELADGG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+FLDE+ IS +Q LLR ++ REV VG + VDVRL+ AT++DL V+ G+ R Sbjct: 241 TVFLDEVSSISMSIQSNLLRFLETREVLPVGGAAPVKVDVRLVFATNQDLKEMVSQGKLR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +D YYR+ V I P LR+RR DI +A HFL F+ K ++ F+P A ++L+ + WP Sbjct: 301 EDFYYRIMVYPIFTPPLRERRADILPIAYHFLDLFSHSMSKDIRSFSPDAAEILLDHSWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELP-----------------------LAIASTPIP 392 GN+R+L NA+ERAV+L G I+ REL A A Sbjct: 361 GNVRQLRNAIERAVILCEGRTITARELEHLQDKPGEEHHQAAYTITHDYQVPANAEELKE 420 Query: 393 LGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + + +VE++ + ALE GN T AA Q G+ R + + Sbjct: 421 AKKIIRQLAVEQVERDFLTQALENADGNITRAAEQAGMQRSNFSNLMKK 469 >UniRef50_Q1DDD5 Sigma-54 dependent DNA-binding response regulator Nla19 n=6 Tax=Myxococcales RepID=Q1DDD5_MYXXD Length = 482 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 200/465 (43%), Positives = 270/465 (58%), Gaps = 26/465 (5%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 +LVVDD + LLR Y V A +G +AL Q+ DL+L D++M Sbjct: 7 PPTRGRLLVVDDQRNMRATTALLLRAENYTVFEAATGEEALAQLASGSIDLLLTDLKMEP 66 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 MDG+ L+ + P + V++MTA+ S+E+AVEA++ GA DY+ KP L+ +E+AL Sbjct: 67 MDGLTLLRRALEVAPRLQVIMMTAFGSIESAVEAMRLGAYDYVTKPFKESELRYRVERAL 126 Query: 122 AHTHSIDAETPA-----VTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 +VG+S AM+ L + + VA S+ATVLI G+SGTGKE Sbjct: 127 ERARLQRDVDNLTTDFNQRHGLSALVGRSAAMRELTTRLMRVAQSDATVLIQGESGTGKE 186 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 LVARA+HA S R + V +NCAA++ESLLESELFGH KGAFTGA K R G F EADGGT Sbjct: 187 LVARALHAHSRRKARSFVPVNCAAISESLLESELFGHAKGAFTGAVKSRRGLFEEADGGT 246 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LF+DE+ + SP Q +LLRA+QE EV+RVG + + VDVR++AAT+RD+ EV RFRQ Sbjct: 247 LFIDEVTETSPTFQSKLLRALQEGEVRRVGESTALRVDVRIVAATNRDIELEVRDKRFRQ 306 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLNVVA+ VP LR+R ED+P LA HFL+R R+ K + A+ L+ Y +PG Sbjct: 307 DLYYRLNVVALRVPPLRERLEDVPALAEHFLERANARSP-NPKRLSAAAVSHLMSYGFPG 365 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ------------------- 397 N+RELEN VE+A L G+ + + P+ G Sbjct: 366 NVRELENLVEQAAALAEGDELLPEDFPVRQGRMTPAHGTPSVAFLDGQGGALGRNASAGP 425 Query: 398 -DIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 Q + E E+ I ALE+ G + A +LG++ TL K+ R Sbjct: 426 TLAQVVEEAERHAITQALERHGVDLARVADELGVSSTTLWRKMKR 470 >UniRef50_Q1Q500 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q500_9BACT Length = 457 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 165/444 (37%), Positives = 267/444 (60%), Gaps = 7/444 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 IL++DDD S +LQ L+ GY+V++A G +A + + +LVL D+R++E Sbjct: 1 MSKEKILIIDDDASILEVLQMRLKALGYSVSIAKDGDEAKTVLFQNKINLVLVDLRLSEE 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 +GI +++I P +P++I+TA+ S+E+AVEA++ GA Y+ KP D+L ++ AL Sbjct: 61 NGIELMRDIIKNYPKLPIIIITAHGSIESAVEAMRRGAYSYIAKPFRNDDLAMQIKNALE 120 Query: 123 HTHSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 + ++GK+ M +L ++ V+ ++ V+I+G+SGTGKEL Sbjct: 121 KQRLTQEIEYLRNQLDERNNFNPIIGKNKQMLEILELVSRVSKTDCNVIIYGESGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 +ARAIH +S R+ P + NC A+ E LLE+ELFGH +GA+T A + +EG F +AD G++ Sbjct: 181 IARAIHQNSNRANGPFIATNCGAIPEGLLENELFGHIRGAYTDAHESKEGLFAQADKGSI 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEI + S + Q++LLR +QERE++ VGS + ++VR+IAA++ DL V+ G FR D Sbjct: 241 FLDEISNTSMIFQIKLLRVLQEREIKPVGSTKNRKINVRIIAASNTDLQKAVSEGTFRDD 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YR++V+ + +P LRQR++DIPLLA +F+ F + +K GF+P A+ ++ YDWPGN Sbjct: 301 LFYRIHVMPVYLPPLRQRKDDIPLLATYFITEFCKALKKDPLGFSPAALQRMLLYDWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKT 417 IREL N +E A ++ I ++ +T +D + E+E I L+ Sbjct: 361 IRELRNKIEHAAIVANKNNIEPEDIFPERNTTTNVFHSYKDAK--ERFEREYIENLLKAN 418 Query: 418 GGNKTEAARQLGITRKTLLAKLSR 441 GN T A++ R + + + Sbjct: 419 NGNITNASKMASRYRADIYKLIKK 442 >UniRef50_Q39U11 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter RepID=Q39U11_GEOMG Length = 449 Score = 603 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 191/441 (43%), Positives = 284/441 (64%), Gaps = 5/441 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + +L+VDD+ + +L A+LR GY+V A +A + + ++ D V+ D++M Sbjct: 4 KAHGKVLIVDDEPNALKVLAAILREEGYSVFKAGDAAEAEQALSKEDIDTVITDMKMPGK 63 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DGI + + P IP++ +TAY SV++AV A+ GA Y IKP D+ L+ L +A+ Sbjct: 64 DGIQLMDFMAEHYPDIPIIFLTAYGSVDSAVHAITRGAFYYFIKPPDYVKLKGILARAVE 123 Query: 123 HTHSIDAETPAVTASQFG----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 G +VG +P M + + V S ++VLI G++GTGKEL+ Sbjct: 124 QRSLKRELETLRKRVSGGTPARIVGATPEMLRIFETVEAVKDSMSSVLICGETGTGKELI 183 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 AR++H S R +KP V +NCAA+ L+ESELFG+EKGAF+GA RR GRF EA GT+F Sbjct: 184 ARSLHYGSVRRDKPFVAVNCAAMPRELIESELFGYEKGAFSGAFSRRIGRFEEAAEGTIF 243 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG++ +Q +LLR +QE+E++R+GSN+ I V+ RLI++T+R++ +E+ AG FR+DL Sbjct: 244 LDEIGELEMPLQAKLLRVLQEKEIERLGSNKKIKVNFRLISSTNRNIPSEITAGNFREDL 303 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRLNVV ++VP LR RREDIPLLA ++ + R K V F + M + ++YDWPGNI Sbjct: 304 FYRLNVVQVQVPPLRDRREDIPLLAAELVREYGAREGK-VLRFDDEVMQVFLNYDWPGNI 362 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTG 418 R+L N +ERAVVL + I+ +ELP + + + Q ++ L E+E+ ILAALE++G Sbjct: 363 RQLGNIIERAVVLAKKDRITTKELPEELKPYVVRVESRQQVRTLRELEEAAILAALEESG 422 Query: 419 GNKTEAARQLGITRKTLLAKL 439 GNK+ AA+ LGI+RK L +L Sbjct: 423 GNKSHAAKMLGISRKALYKRL 443 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 602 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 172/442 (38%), Positives = 267/442 (60%), Gaps = 8/442 (1%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +++ +DD ++ +L G V S +++L+ + +V+ D+RM +DG+ Sbjct: 7 VVITEDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMPRIDGMKV 66 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L + NP V++MT +++VE+AV++LK GA DY+ KP + L+ T+E+AL+H + Sbjct: 67 LDFARQKNPLTQVILMTGHATVESAVQSLKAGAFDYICKPFENVELRHTVERALSHWNLS 126 Query: 128 DAETPAVT-----ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 A ++G+S AM + I A + +VLI G+SGTGKELVAR I Sbjct: 127 RENMRLREENKVFAEGDVIIGRSAAMDEVHRLIDAAAAYDCSVLITGESGTGKELVARQI 186 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R + V +NCAA+ E ++ESELFG++KGAFTGA++ + G F A+GGT+FLDE+ Sbjct: 187 HLKSPRRDNSFVAINCAAIPEQIIESELFGYQKGAFTGAERAKPGLFETANGGTIFLDEV 246 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 + S +Q +LLR +Q+ R+G + V+VR++AAT+RD+ + FR+DLYYRL Sbjct: 247 NNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVLAATNRDVPGLIAQETFREDLYYRL 306 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 V+ I +P+LR RR+D+PLLA +F+ ++A+R K V G + Q + L+ +DWPGN+RELE Sbjct: 307 RVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPVDGMSTQVLGALMRHDWPGNVRELE 366 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD---IQPLVEVEKEVILAALEKTGG 419 N ++RA++L G+ I E LP I+ ++ D Q L EVE I L +T G Sbjct: 367 NVIQRALILCQGKVIDEGVLPPEISRGTELSVRAIDHMQPQTLEEVEVYFIRKTLRETNG 426 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 ++ A LGI + TL K+ R Sbjct: 427 DRALCAEILGIDKSTLWRKIKR 448 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 602 bits (1554), Expect = e-171, Method: Composition-based stats. Identities = 192/486 (39%), Positives = 266/486 (54%), Gaps = 50/486 (10%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +L+VDD+ + L L+ GY LANSG+ AL+ V + D VL DV+M +MDG Sbjct: 2 PASVLIVDDEKNILLTLSQSLQLAGYQTHLANSGQVALDVVSARPVDAVLMDVKMPDMDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L ++ L P +PV++M+ + +++TAV+A + GA D+L KP+ + L L L H Sbjct: 62 LTALAKLTELKPELPVIMMSGHGTIDTAVKATQLGARDFLEKPIARERLLVALRNVLKHQ 121 Query: 125 HSIDAETPAVTA-SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 ++ ++ MVG PAMQ + S I APSE VLI G++GTGKEL+ARA+H Sbjct: 122 AAMAELQELRAQLGRYDMVGSGPAMQRIFSLIQRTAPSEGRVLITGENGTGKELIARALH 181 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S R +P V LNCAA+ L+ESELFGHEKGAFTGA R G+F A GTLFLDEIG Sbjct: 182 QHSKRKGQPFVKLNCAAVPHELIESELFGHEKGAFTGAVSVRRGKFELAHEGTLFLDEIG 241 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+ MQ +LLR +QE E++RVG + VDVR++AAT+++L AE+ AGRFR+DLYYR+N Sbjct: 242 DMPQAMQAKLLRVLQEGELERVGGAETHKVDVRVVAATNKNLEAEIAAGRFREDLYYRIN 301 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV I P LR+RRED+P L FL +N + +P A+ ++ YD+PGN+REL N Sbjct: 302 VVQIHSPPLRERREDLPDLIKTFLDEACAKNGRRPLTLSPDALAVMSAYDYPGNVRELRN 361 Query: 364 AVERAVVLLTGEYISERE----LPLAIASTPI---------------------------- 391 VER +L G ++ + LP P Sbjct: 362 LVERLAILCEGPIVTRTDALELLPRGRNVPPPAPVETPASPLPPPSPEAAVVLASSTPAP 421 Query: 392 -----------------PLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKT 434 P + + + E+E+I L T N TEAAR L + R Sbjct: 422 AIAAPVATEPPAPVGFRPRADRTFREQVEDAEREIIQHVLSHTHDNVTEAARLLDLERGH 481 Query: 435 LLAKLS 440 K+ Sbjct: 482 FYKKMK 487 >UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulator n=5 Tax=Cystobacterineae RepID=Q1D3M5_MYXXD Length = 457 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 206/449 (45%), Positives = 279/449 (62%), Gaps = 12/449 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ +LVVDD + +L+ L GY V +A G A+ Q+R +V+D VLCD+RM Sbjct: 1 MS-SRARVLVVDDHVEMGQMLKEPLTDDGYKVDIATGGADAIAQLRARVYDAVLCDLRMQ 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++DG L + L+P +PV++MTA+ VE+AVEA+K GA Y KP D ++ +LE+A Sbjct: 60 DVDGFDVLDAARKLDPDLPVVMMTAFGGVESAVEAMKRGAFHYFTKPFRLDEVRLSLERA 119 Query: 121 LAHTHSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + +VG S AM+ L + I VA S A VL+ G+SG+GK Sbjct: 120 LEQRRLRTEHRTLKQQAADRGGLGALVGSSTAMRDLYALIERVAWSGAPVLVRGESGSGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARA+H R P V +NC AL +LLESELFGH KGAFTGA R G FVEADGG Sbjct: 180 ELVARALHFEGTRRAGPFVAVNCTALPHALLESELFGHVKGAFTGATTARRGLFVEADGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIGD++P +Q RLLR +++ EV+ VG++ +VDVR++AATH+DL V GRFR Sbjct: 240 TLFLDEIGDMAPELQARLLRVLEDGEVRAVGADGSRTVDVRVVAATHQDLETRVKEGRFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA-VKGFTPQAMDLLIHYDW 354 D++YRLNVV + +P LR+RREDIP L HFLQ+ RN ++ V+ F+P+ + L W Sbjct: 300 ADVFYRLNVVTLRLPPLRERREDIPALIEHFLQQAKARNPRSVVQRFSPETLAALGALPW 359 Query: 355 PGNIRELENAVERAVVLLTGEYISE----RELPLAIASTPIPLGQSQ-DIQPLVEVEKEV 409 GN+RELEN V+R VVL + E + LP + PL +Q I PL ++E E Sbjct: 360 AGNVRELENLVQRLVVLGSTEVVDLPQLRPHLPSDTSQENHPLAAAQRTIVPLRQLETEY 419 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAK 438 I A+ + GGNKT+AA LGI T+ + Sbjct: 420 IAWAVARCGGNKTKAAELLGIDVSTIHRR 448 >UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=D2L4Q3_9DELT Length = 453 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 185/439 (42%), Positives = 263/439 (59%), Gaps = 3/439 (0%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 IL VDDD +L+ L GY+V A G +ALE + ++ LV+ D+RM M Sbjct: 6 QTRKTILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVKLVISDIRMPGM 65 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ L+E++ +P++ +TA+ S+ AVEA+K GA+DYL KP D L + + A Sbjct: 66 DGMRLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEVFA 125 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + T + G+VG+S AM+ L + I VAP + VL+ G+SGTGKELVA I Sbjct: 126 RAAG-NDATRERDLGESGLVGQSEAMRDLAAMIERVAPRDVNVLVLGESGTGKELVANLI 184 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R PLVT++C + LLESELFGH KG+FT A K ++G +A+ GTLFLDEI Sbjct: 185 HRRSPRKNGPLVTVDCGSTPAGLLESELFGHVKGSFTHAVKDKKGLIEQANQGTLFLDEI 244 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G+IS MQ+RLLR ++ ++R+G + I VD R+IAAT+ D+ +V G FR+DL YRL Sbjct: 245 GNISTEMQIRLLRFLENHRIRRIGDVREIQVDCRVIAATNADIFEQVAEGVFREDLLYRL 304 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 VV I VP LR+RREDIP+LA HF ++F + M L+ Y WPGN+R+L Sbjct: 305 KVVTINVPPLRERREDIPILAEHFTRQFCAAQGMPPVTVPAETMAYLMAYPWPGNVRQLR 364 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKT 422 NA+E VVL TG ++ ++L L +A ++ + L E EK I+ ALE+ + Sbjct: 365 NALEAGVVLCTGGVLAPKDLQLPLAGKG--PDRAGESLSLDESEKTAIVRALEQANWVQK 422 Query: 423 EAARQLGITRKTLLAKLSR 441 AA LG++R+ L K+ + Sbjct: 423 AAAPLLGVSRRALNYKIQK 441 >UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Planctomycetaceae RepID=D2R3E8_9PLAN Length = 465 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 180/446 (40%), Positives = 258/446 (57%), Gaps = 8/446 (1%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 + + IL DD+ + ++ L G+ V + G A+ + +D ++ D+ M M+ Sbjct: 12 NRLKILFADDEAALQELMSLELPRMGHEVTVCPDGPTAVAALELNTYDCIIVDLDMPGMN 71 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 GI + + K L P +++T SS ++A+ AL+ GA DYL KP +L+A L + A Sbjct: 72 GIQVIGKCKELAPDTDAVVLTGKSSFDSAIAALRFGAFDYLTKPCKLVDLKALLHRVAAK 131 Query: 124 TH-----SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + +VG S AM + I VAP+ +TVL+ G++GTGKELV Sbjct: 132 REWVNKCRALKHQLERLEGKTELVGSSRAMDQVRKLIQKVAPTGSTVLVLGETGTGKELV 191 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARA+H S R+EKP V +NC AL ESL+ESELFGH KG+FTGAD R G F A GGT+F Sbjct: 192 ARAVHQQSLRAEKPFVAVNCGALPESLIESELFGHRKGSFTGADDHRVGLFEVAHGGTIF 251 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG++ MQ +LLR ++ E++RVG N VDVR++ ATHR+L V AG FR+DL Sbjct: 252 LDEIGELPKSMQAKLLRVLESGEIRRVGDNNAFVVDVRVVCATHRNLPEMVEAGDFREDL 311 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YR+N + +P LR+R +DI LA H L+RF + FTP+A+ LL + WPGN+ Sbjct: 312 MYRINTFELHIPPLRERLDDIEDLASHLLRRFLPTLKAGDTCFTPEAVQLLEKHGWPGNV 371 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPL---GQSQDIQPLVEVEKEVILAALE 415 REL N +E A +L I+ LP ++ P + L ++E + I AL+ Sbjct: 372 RELANVIEHASILCDKAPITPENLPQRLSGRIKPQLTRARIAGPISLRDLEMQAIHEALD 431 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 + GNK EAA +LGI+ KTL KL++ Sbjct: 432 RHNGNKPEAAEELGISLKTLYNKLNQ 457 >UniRef50_Q9KT84 Regulatory protein luxO n=25 Tax=Vibrio RepID=LUXO_VIBCH Length = 455 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 168/441 (38%), Positives = 257/441 (58%), Gaps = 11/441 (2%) Query: 11 VDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKE 70 V+D S + ++ L ++ + +GR A+E + + DL+L D+R+ +M G+ L Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYA 61 Query: 71 IKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDAE 130 +K +P +P++ MTA+ S++TAVEA++ GA D+LIKP + D L+ T+ A+ + + Sbjct: 62 VKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKND 121 Query: 131 TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSE 190 + G +G S MQ + I A S+A++ I G+SGTGKE+ A AIHA+S R + Sbjct: 122 VDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGD 181 Query: 191 KPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQ 250 KP + +NCAA+ + L+ESELFGH KGAFTGA R+G ADGGTLFLDE+ ++ +Q Sbjct: 182 KPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDLQ 241 Query: 251 VRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVP 310 +LLR IQ Q+VGS+++ SVDVR + AT+RD EV GRFR+DLYYRL V+ + +P Sbjct: 242 TKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLP 301 Query: 311 SLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVV 370 LR R +D+ +A L ++ K + + ++ Y+WPGN+R+L+N + VV Sbjct: 302 PLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVV 361 Query: 371 LLTGEYISERELPLAIASTPIPLGQS-----------QDIQPLVEVEKEVILAALEKTGG 419 L G I+ LP + P+ ++ +I PL EK+ I A+E G Sbjct: 362 LNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIEACDG 421 Query: 420 NKTEAARQLGITRKTLLAKLS 440 N AA L ++ T+ KL Sbjct: 422 NIPRAATYLDVSPSTIYRKLQ 442 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 601 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 203/456 (44%), Positives = 276/456 (60%), Gaps = 22/456 (4%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILV DD+ S IL +L G GY+V G AL+++ + +D++LCDVRM + DG+ Sbjct: 6 TILVADDEPSIRHILTLVLTGHGYDVRAVADGEDALKELAARDYDVLLCDVRMPKKDGLV 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+E A +PA+ ++M+AY S E A++A+ GA DY+ KP D + L KA Sbjct: 66 VLREALASHPALTAVVMSAYGSQEQALQAVAAGAFDYVQKPFKPDEIVFVLRKAEERERL 125 Query: 127 IDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + AS ++G+SPA+ LL ++A +AP + TVLI G+SGTGKEL+AR Sbjct: 126 VRENRRLKQASLPSTPGGHILGESPALHALLRQVARLAPVDTTVLISGESGTGKELIARE 185 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S R+ V +NC A+ L+ESELFGH KGAFT A + G F EADGGTLFLDE Sbjct: 186 LHVRSPRAPMSFVAVNCGAIPSGLIESELFGHAKGAFTDARTAKRGLFAEADGGTLFLDE 245 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 +G++ QV+LLR +QE E++ VG N++ V+VR++AAT RDL+ V G FR+DLYYR Sbjct: 246 VGELPLAAQVKLLRVLQEGEIRPVGENRVEKVNVRVVAATLRDLSRLVAKGDFREDLYYR 305 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVK--GFTPQAMDLLIHYDWPGNIR 359 LNVV + VP LR+RRED+PLLA F+ RF + G T +A LL Y WPGN+R Sbjct: 306 LNVVNLRVPPLRERREDVPLLARAFIARFNRELNREPPVAGLTAEAEALLKSYAWPGNVR 365 Query: 360 ELENAVERAVVLLTGEYISERELPLAI--ASTPIPLGQSQDIQPL-------------VE 404 ELENA+ERAV+L +I LP + AS P P G+ P+ E Sbjct: 366 ELENAMERAVLLADEPHILPANLPERLWAASPPGPHGEKPHGDPVLQGGGDLSLKRAIRE 425 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +E+ I AAL KT GN+T AA L I+ + LL K+ Sbjct: 426 LEESYIRAALRKTKGNRTRAAELLDISHRALLYKIK 461 >UniRef50_C6BW44 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrionales RepID=C6BW44_DESAD Length = 444 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 195/442 (44%), Positives = 273/442 (61%), Gaps = 4/442 (0%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + I IL VDD S +L+ L GY+V +AL + E D+V+ D RM Sbjct: 1 MS-EKIRILAVDDSKSTLEVLKRNLESQGYDVLTCLRVDEALSLLEEHEIDIVITDFRMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ ++ ++ + + ++++T Y S+ AVEA+K GA +YL KP + LQ +++ Sbjct: 60 QATGLDLIRHVRENHRDVELMMITGYPSISGAVEAIKDGAGEYLPKPFTSEELQGAMDRI 119 Query: 121 LAHTHSIDA-ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + H A + V +G+VG SP MQ + I A + A VLI GDSGTGKELVA Sbjct: 120 VERVHRRRALKAVEVPDETYGIVGNSPGMQLVFRRIGKAAATNANVLISGDSGTGKELVA 179 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RA+H S R P V +NCAA+ +SL+ESELFGH KGAFTGA + R G F A+GGT+FL Sbjct: 180 RAVHYHSDRRAAPFVPVNCAAIPDSLVESELFGHVKGAFTGAKEARAGFFEIANGGTVFL 239 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD SP MQ +LLR +Q +E +VGS+ + +VD R++AATH+DL V G FR+DLY Sbjct: 240 DEIGDASPNMQAKLLRILQSKEYCKVGSSVVHTVDTRILAATHKDLKRLVEDGSFREDLY 299 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL+VV I VPSL +R +DI +L +FL +F++ + T +A+ L +Y WPGN+R Sbjct: 300 YRLHVVDIPVPSLAERGDDILILISNFLVKFSKTMQCPTPSITDEALTALRNYSWPGNVR 359 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGG 419 ELEN ++R VV++ + I +LP + +P+ + D + L EVE+E I L T Sbjct: 360 ELENLIQRMVVIVDHDPIEVTDLPPNMR-FSLPMEERVD-RSLAEVEQEHIKNVLIMTDN 417 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 NKT AA LGI RKTL KL R Sbjct: 418 NKTRAAEILGINRKTLREKLKR 439 >UniRef50_D2QY56 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QY56_9PLAN Length = 483 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 187/446 (41%), Positives = 265/446 (59%), Gaps = 16/446 (3%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 +ID+LVVDDD + L G+ + A + ALE + FD+ + D++M M Sbjct: 5 THIDLLVVDDDQEFRETVVKRLSRSGFRLQDAPTAEAALELAERRDFDVAVFDMQMPGMS 64 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ L K +P V+++T S+E+AVEA++ GA DYL KP +L+ +EKA Sbjct: 65 GLDLLAAFKTKHPDCEVILLTGQGSIESAVEAMRMGAFDYLTKPFPLRDLEVRIEKAYDR 124 Query: 124 THSIDAETPA-----VTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 +A M+GKS AMQ L I PSE +LI G+SGTGKELV Sbjct: 125 HLLRKENQQLKTILARSAPGSTMIGKSVAMQELQRLIQRAGPSEKAILIQGESGTGKELV 184 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARA+HA+S+R+++P+V +NCAAL E LLESELFGHEKGAFTGA + G F ADG TLF Sbjct: 185 ARALHAASSRADRPMVVINCAALPEPLLESELFGHEKGAFTGAVAAKPGLFEVADGSTLF 244 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 +DEIG++ +Q +LLR +++ ++R+GS Q V+VR++AAT+R + EV AG FR+DL Sbjct: 245 IDEIGEMPGSLQAKLLRVLEDGSLRRIGSLQERRVNVRILAATNRSMQDEVTAGNFREDL 304 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYR+NV+++E+P LR R DIPLL HFL + P A+ L Y WPGN+ Sbjct: 305 YYRINVMSLELPPLRSRTADIPLLVEHFLGK--------DWRIEPTALSALEQYAWPGNV 356 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQ---DIQPLVEVEKEVILAALE 415 R+L NA+ERA ++ G I +LP + + DI L ++++ I+ L+ Sbjct: 357 RQLINAIERAKIMADGRTIRANDLPTEVLHALPQIELPPSLDDIDDLSAIQRQKIVEVLK 416 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 + GNK+ AAR LGI R+ L L + Sbjct: 417 REKGNKSRAARMLGIDRRKLYRLLEK 442 >UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPF3_9BACT Length = 451 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 170/443 (38%), Positives = 253/443 (57%), Gaps = 8/443 (1%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +IL++DD+ S CT +Q +L GY A + +++++ FD++ D+ + + DGI Sbjct: 2 ANILIIDDEKSICTTIQGILEDEGYTADYALTFCDGFKKLKDGSFDILFLDIWLPDRDGI 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 LKEIK P + V+I++ + ++E AVEA++ GA D+L KPL + + ++ Sbjct: 62 DGLKEIKKYFPELEVVIISGHGNIENAVEAIRVGAYDFLEKPLSLERILLIVKHLQDKFQ 121 Query: 126 SID--AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + E+ ++ ++G S + L +I +AP+ A V+I G++GTGKE VAR IH Sbjct: 122 LMRDLRESRGDQLKKYDLIGTSKPLLDLRKKIEKIAPTNAWVMITGENGTGKEHVARLIH 181 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S RS V +NCAA+ LLESE+FGHEKGAFTGA ++G+F E D GT+FLDEIG Sbjct: 182 MLSKRSRNSFVEINCAAIPSELLESEMFGHEKGAFTGAHMAKKGKFEEGDNGTVFLDEIG 241 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+ Q +LLR ++ RVG N +S D RLI AT+++L E++ G FR+DLYYR+N Sbjct: 242 DMEMSAQAKLLRVLENNTFSRVGGNASVSSDFRLITATNKELEDEISDGNFREDLYYRIN 301 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 VV + VP LR+R +DIPLL HF++ N +K + M L + ++WPGN+R+L+N Sbjct: 302 VVPLVVPPLRERHDDIPLLVNHFIKEACSFNGIELKKVDEELMHLFVQFEWPGNVRQLKN 361 Query: 364 AVERAVVLLTGEYISERELPLAIASTPIPLG------QSQDIQPLVEVEKEVILAALEKT 417 VER VVL +S + P I P + EK IL L+ Sbjct: 362 LVERMVVLSEDSVMSLDDAPDFIQGKHFPQKSYDVEYEYPLKHAKENFEKHYILNILQNN 421 Query: 418 GGNKTEAARQLGITRKTLLAKLS 440 N + +AR L I R L K+ Sbjct: 422 DWNISRSARILEIERTYLHRKIK 444 >UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSF9_ALKMQ Length = 462 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 169/457 (36%), Positives = 263/457 (57%), Gaps = 20/457 (4%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 I+++DD+ + L+ L GY A + L+++ V D+R+ + +G Sbjct: 2 RKKIVIIDDEETIRLSLKEALMDLGYEAETAGDSWEGLKRIALFKPQAVFLDMRLPDGNG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + ++ IK ++ + V++MTAY ++TAV A+K GA DY+ KP + D +Q L + Sbjct: 62 LQLIQRIKEMDKDLEVVLMTAYGDIKTAVTAIKNGAFDYINKPFELDEVQIILTRIFDKL 121 Query: 125 HSIDA---ETPAVTASQFGMVGKSPAMQHLLSEIALVAPS-EATVLIHGDSGTGKELVAR 180 ++ ++G +M+ + S++A+++ + + TVLI G++GTGKE+VA Sbjct: 122 KLQKKIYLLEKEKLSNDETIIGSHSSMKDVFSKVAILSENEDVTVLIRGETGTGKEVVAS 181 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +S R E ++ +NC A+ L+ESELFG+EK AFTGA R++G ADGGT+FLD Sbjct: 182 AIHHNSPRKEASMLKINCGAIPTQLMESELFGYEKSAFTGATARKKGLLEIADGGTVFLD 241 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG++S MQ +LLR ++ER+ +RVG + I V++R+IAAT++DL + FR+DLYY Sbjct: 242 EIGELSMDMQTKLLRFLEERKFKRVGGLEDIEVNIRVIAATNKDLEEAIEKKEFREDLYY 301 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV +++P LRQR EDI LLA H+L ++ ++ K + FT +A + L+ Y W GNIRE Sbjct: 302 RLNVVPMDLPPLRQRGEDILLLAQHYLAQYNQKFNKKIMDFTEEAKEKLLKYHWKGNIRE 361 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIP----------------LGQSQDIQPLVE 404 L+N +ER ++L YI LP+ I + L E Sbjct: 362 LKNVLERTIILNDDSYIRLEHLPIEIVGSEEKTVATNIQPMIKIGEDIPKDFSLENYLQE 421 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +EK I AL GN ++AA LGI+R L K + Sbjct: 422 IEKSYIQTALRLCKGNHSKAAYILGISRFALKRKQEK 458 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 184/449 (40%), Positives = 260/449 (57%), Gaps = 12/449 (2%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 IL+V+D++S +Q L GY VA A++ A + + FDLV+ D+R+ M Sbjct: 1 MTPHSILLVEDELSMRLGMQHALSRAGYEVAAADTAEAARHALHRRPFDLVITDLRLPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ L I+ ++P V+++TA+ VE AV+A+K GA D+L KP D L +E+ Sbjct: 61 SGMELLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFDFLCKPFQSDGLLIAVERFFR 120 Query: 123 HTHSIDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + G +G+SPAM + I +A + VL+ G SG+GKELVA A Sbjct: 121 FLDLKRENDRLRGEREEGEFIGESPAMLKVFDRIRALADACVPVLVLGPSGSGKELVAGA 180 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H S R ++P + +NCAAL E LLESELFGHEKGAFTGA + R G+F ADGGTLF DE Sbjct: 181 LHRRSKRRDRPFIKINCAALPEQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFFDE 240 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 +G++ +Q +LLR ++++EV VG N V+VR + AT R+L + GRFR+DLYYR Sbjct: 241 VGEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLYYR 300 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 +NVV + +P LR+R D+ LL FL+RF + + + QA L+ YD+PGN+REL Sbjct: 301 INVVPVTLPPLRERGSDVALLTERFLRRFCALHERQA-TLSEQARLALLAYDYPGNVREL 359 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP----------LVEVEKEVIL 411 NAVE AV+L T I LP I + + + D + E+ I+ Sbjct: 360 RNAVEHAVLLCTEGEIHVGHLPERIRAATQSMPPACDDDAGDTPASLAEGVARFERRRIM 419 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLS 440 ALE+TGG K +AA LGI+RK L KL Sbjct: 420 EALERTGGRKIQAADLLGISRKQLWLKLK 448 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 173/440 (39%), Positives = 259/440 (58%), Gaps = 7/440 (1%) Query: 9 LVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATL 68 L+VDD+ + + ++ G A G++A+ ++ + FD++ DVRM M G+ L Sbjct: 11 LIVDDEPVVRSGISRIVTHMGLKPDDAADGKEAISKMSDSYFDIIFLDVRMQGMGGMEVL 70 Query: 69 KEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH--- 125 IK N + V+++T + + ++A+K GA DYL KP D+++ +++A + Sbjct: 71 GWIKDNNISSLVVMITGVTEPDIIIQAMKMGAFDYLAKPFGVDDIENIIQRAEKASAPPA 130 Query: 126 ---SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 I M+G SP MQ+L S + VAP++ TVLI G+SGTGKELVARAI Sbjct: 131 QTIGIPKSKGLQAGPDRIMLGSSPVMQNLFSRMLKVAPTDGTVLITGESGTGKELVARAI 190 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R E V ++C+AL E+LLESELFGH KG+FTGA + ++G F A+ GT F DEI Sbjct: 191 HYHSRRRENEFVPVDCSALVENLLESELFGHVKGSFTGALQSKKGLFELANHGTFFFDEI 250 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 ++S +Q +LLR IQERE +VG I VD+R++ A++RDL A + +FR+DL+YRL Sbjct: 251 SNLSMDIQAKLLRVIQEREFTQVGGAVRIKVDLRIMVASNRDLRAAIAENKFREDLFYRL 310 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 +V+ I +P LR+R +DI L +F+ + + + + +AMD+L+ Y WPGN+RELE Sbjct: 311 HVIPIHLPPLRERGKDIEELVNYFVLHMSRKIGREAPKVSREAMDVLLSYAWPGNVRELE 370 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-PLVEVEKEVILAALEKTGGNK 421 N +ER ++L I LP I P L D L ++E++ I L +T G Sbjct: 371 NTIERTLILKDDAVIKPEHLPQDIRQQPPDLRSFSDKMVSLKDLERDYIRFVLSRTNGGI 430 Query: 422 TEAARQLGITRKTLLAKLSR 441 +AA LGI RKTL K+ + Sbjct: 431 QKAAGILGINRKTLSMKMKK 450 >UniRef50_D2L5H7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5H7_9DELT Length = 449 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 187/446 (41%), Positives = 262/446 (58%), Gaps = 8/446 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ILVVDD+ L +L G+ + A GR+AL + E+ FDLVL D+RM M Sbjct: 1 MSRARILVVDDEAIARENLVHVLTRAGHRASAAADGREALAALAEEPFDLVLTDLRMPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ L +K P + V+++T +++V+TAV A+ GA Y+ KP+ + + A KAL Sbjct: 61 DGLELLAGLKRRFPEVEVIVVTGHAAVDTAVAAMGLGAFTYVAKPVHVEEVLAQTAKALE 120 Query: 123 HTHSIDAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 + ++G+S M+ L I VA E VL+ G++GTGKEL Sbjct: 121 KNAMRRELASLRRRADPASGLSRLIGQSATMEALRESIVQVARLECNVLVTGETGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VAR IH SAR+ + +NC A +E L+ +ELFGHE+ AFTGA RR+G A GGTL Sbjct: 181 VARTIHDLSARARGRFMAVNCGAFSEELISNELFGHEREAFTGAGARRKGLIEAAAGGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG++ MQV+LLR +QER RVG + +D R+++AT++DL E AG FRQD Sbjct: 241 FLDEIGELPLSMQVKLLRVLQERTFLRVGGTEEAPMDARVLSATNKDLKKEAEAGAFRQD 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRL+V+ + VP L +RREDIPLLA HFL R A + V +P+ +D L+ Y++PGN Sbjct: 301 LFYRLDVITLHVPPLSERREDIPLLARHFLARHASEAGRNV-RLSPEVLDSLLLYEYPGN 359 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI--QPLVEVEKEVILAALE 415 +RELEN V++A+ + G+ I R L + + + L E EK I LE Sbjct: 360 VRELENIVQKALAVCDGDVIESRHLLADLRDQRVRPTRGTRKSWPTLEEHEKAYIRDVLE 419 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 + GNK++AAR LGI R +L KL R Sbjct: 420 EVEGNKSKAARVLGIDRVSLWRKLKR 445 >UniRef50_Q1CWG7 Sigma-54 dependent DNA-binding response regulator n=6 Tax=Bacteria RepID=Q1CWG7_MYXXD Length = 477 Score = 599 bits (1546), Expect = e-170, Method: Composition-based stats. Identities = 189/447 (42%), Positives = 267/447 (59%), Gaps = 16/447 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRM-----AEM 62 +LV DD L+ LL+ G V + S AL + + DLVL D+ + Sbjct: 25 VLVADDQADVLEALRLLLKRDGLTVVTSQSPAGALATLEAEDVDLVLMDLNYARDTTSGQ 84 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE---- 118 +GI L I+A + ++PV++MTA+ SVE AVEA++ GA DY+ KP D L ATL Sbjct: 85 EGIDLLGRIRAQDASLPVVVMTAWGSVEGAVEAMRAGARDYVQKPWDNTRLLATLRTQLE 144 Query: 119 --KALAHTHSIDAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGT 173 +AL + ++ E + Q MV +S +MQ + I VAPS A VL+ G+ GT Sbjct: 145 LRRALKRSRRLEEENQHLRRGQGNQLAMVSESRSMQPVRRLIERVAPSGANVLVTGEHGT 204 Query: 174 GKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD 233 GKE+VAR IH S RSE+ V +N L+E + ESELFGH KGAFT A R G F AD Sbjct: 205 GKEVVARLIHGGSTRSERAFVAVNSGGLSEGVFESELFGHVKGAFTDAKSDRIGCFELAD 264 Query: 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR 293 GGTLFLDEIG++ Q +LLR +Q E+ VGS++ VDVR+++AT+ DL+ V GR Sbjct: 265 GGTLFLDEIGNMPLSQQAKLLRVLQTGELHPVGSSKTRRVDVRVVSATNVDLSRAVAEGR 324 Query: 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 FR+DL YRLN V +++P LR+RREDIPLLA HFL R + + +A++ L+ Y Sbjct: 325 FREDLLYRLNTVEVQLPPLRERREDIPLLAAHFLAEQGRRYGRPNVRLSSEALEALLAYA 384 Query: 354 WPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAA 413 WPGN+RELE+AVERA+++ +G+ +++ +L + + L EVE+ +I A Sbjct: 385 WPGNVRELEHAVERAMLMASGDEVTQEDL--LLKRAGREGMARLEEMTLEEVERYLIERA 442 Query: 414 LEKTGGNKTEAARQLGITRKTLLAKLS 440 L + GN +EAA+ LG++R L +L Sbjct: 443 LARHEGNVSEAAKGLGLSRSALYRRLQ 469 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 599 bits (1546), Expect = e-170, Method: Composition-based stats. Identities = 184/450 (40%), Positives = 269/450 (59%), Gaps = 12/450 (2%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 I +L+VD+D + ++ L GY+ +A SG + + +V++ F++V+ D+ M ++D Sbjct: 14 PPIRVLIVDNDTALAQAMEESLARVGYHCTIATSGPEGVRRVQQDNFEIVITDLVMNDVD 73 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ L K P V+++T +++V AVEA++ GA ++L KP+ L+A EKA Sbjct: 74 GMEVLARAKEALPEAEVIMVTGHATVPKAVEAMQQGAFNFLEKPITPTRLRAVAEKAADA 133 Query: 124 THSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 G++ S M+ ++ + +AP++A+VLI G+SGTGKELV Sbjct: 134 VRLRQTNQELNQRLDERFGFEGIIFSSEKMKQVIDRLKRIAPTDASVLITGESGTGKELV 193 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 A+AIH +S R K +V LNCAA+ E+L+ESELFGH KGA+T A R G F A+GGTLF Sbjct: 194 AQAIHQNSPRKSKRIVALNCAAVAENLVESELFGHVKGAYTDALNDRMGAFEYANGGTLF 253 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDE+GD+ Q++LLR ++E ++ RVG N+ I V+VR+++AT+R L + AG FR DL Sbjct: 254 LDEVGDMPLATQIKLLRVLEEHQITRVGDNKPIRVNVRMVSATNRALEDAIKAGTFRADL 313 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYRL VV +E+P+LRQRREDI LA HF ++F R+ K KG +P L YDWPGN+ Sbjct: 314 YYRLKVVTVELPALRQRREDIVPLADHFRRQFIRRHHKPNKGISPVVSRRLFSYDWPGNV 373 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPI-------PLGQSQDIQPLVEVEKEVIL 411 R+L NA+E VVL T + +LP + QPL +E+ I Sbjct: 374 RQLRNAIETMVVLDTDGILDIDDLPPELVDAEELRTPAIASGPSELIGQPLDNIERWAIE 433 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L+ T GN+ EAAR LGI +TL KL + Sbjct: 434 ETLKLTSGNREEAARILGIGARTLYRKLDK 463 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 599 bits (1545), Expect = e-170, Method: Composition-based stats. Identities = 180/450 (40%), Positives = 267/450 (59%), Gaps = 19/450 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 IL+V+D +L L+ GY V + + +AL + +Q F VL D+++ G+ Sbjct: 4 ILLVEDKADLREMLTTALQRMGYAVLPSANVNEALVDLAKQRFSAVLTDLKLPGGSGMDV 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L +P +PV++MTA+ ++ AVEA++ GA D++ KP+D +L+ LE+A+ + Sbjct: 64 LSAALDSDPMVPVVVMTAFGTIADAVEAMRAGAFDFIQKPIDLTHLKLLLERAVERQRLM 123 Query: 128 D-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 E A ++G+ P MQ+ E+ +A S++TVL+ G+SGTGKEL ARAI Sbjct: 124 RDNVVLREEYARKMGFPRIIGEHPTMQNSAREMQRIAGSDSTVLLLGESGTGKELFARAI 183 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S RS +P V LNCAA+ E L+E+ELFGHEKGAFTGA+ R+ G+F A+ GT+FLDEI Sbjct: 184 HQLSIRSTQPFVALNCAAMPEGLIENELFGHEKGAFTGANTRKSGKFEMANRGTIFLDEI 243 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 G++ +Q +LLR ++E V+R+GS + +DVR++AAT+R+L V AG FR+DLYYRL Sbjct: 244 GELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNRELEQAVEAGAFRRDLYYRL 303 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 V I +P LR+R ED+ L+A HFL F + +K P A+ L + WPGN+REL+ Sbjct: 304 AVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSLAPDALAALRAHLWPGNVRELQ 363 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD-------------IQPLVEVEKEV 409 N +ERA +L E ++ +L L+ + Q +EK Sbjct: 364 NTIERAAILHDTE-VTAADLGLSANLRSAAAVSLGEHSIDMGGSLPEVSAQASRTIEKAK 422 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKL 439 I A L + NK+ AA +LGI+ KTLL K+ Sbjct: 423 IEATLRECKWNKSAAAERLGISYKTLLTKI 452 >UniRef50_C6BWX2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWX2_DESAD Length = 447 Score = 598 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 175/443 (39%), Positives = 271/443 (61%), Gaps = 10/443 (2%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 + +IL+V+D+ L ++ G+ V +SG +AL+++ +Q F+LVL D+ + M+ Sbjct: 3 SHANILIVEDEAIARDNLTHVMTEAGHMVVAVSSGTEALQKIGKQEFELVLTDLMLPGMN 62 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 GI L+ IK + P+ V+++T ++SV+TAV A++ GA Y+ KPL+ D L+A + AL Sbjct: 63 GIELLEHIKEIQPSTQVIVITGHASVDTAVIAMQKGAHSYIAKPLNLDELRAQVFNALER 122 Query: 124 THSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + G +VG+S + L I +A + VLI G++GTGKEL+ Sbjct: 123 QALSVEVLRLRQVLEEGKQDFPLVGQSDQIIKLKKTIEQLAHMDCNVLIQGETGTGKELI 182 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 AR IH S RS++ + +NC L++ ELFGHE+ AFTGA + ++G A+GGT+F Sbjct: 183 ARGIHMLSPRSQERFMAINCGTFTAELMDKELFGHEREAFTGAQRGQKGILEVANGGTVF 242 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 DE+ ++ MQV+LLR +QER RVG Q I VD+R+++AT+ DL EV G FRQDL Sbjct: 243 FDEMSELPLNMQVKLLRVLQERNFLRVGGTQEIPVDIRVVSATNCDLKEEVKNGTFRQDL 302 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRLNVV + P LR REDIP+L GHFL++ + ++ + + +D+L++Y +PGN+ Sbjct: 303 FYRLNVVTLSAPPLRDHREDIPVLIGHFLEKHRTETQ-SIDTISQETLDILMNYSFPGNV 361 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTG 418 RELEN +RA+ L G S LP I + + +++ ++ L EVE++ I + T Sbjct: 362 RELENISQRALALARGTVFSPDLLPEEIRN----IDRNKPLRTLEEVERDHIEKVMLATN 417 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 GNKT+AA+ LGI R +L K+ R Sbjct: 418 GNKTQAAKILGIDRVSLWRKMKR 440 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 183/443 (41%), Positives = 265/443 (59%), Gaps = 12/443 (2%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + +LVVDD+ L L G+ V A S + E++ FDLV+ D+ + Sbjct: 9 SAPQQSVLVVDDEQGMRNFLSRALALRGFVVDTAESAEEGAEKLAATRFDLVILDIALPG 68 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 GI L+++ A A V+++TA++ ++TA++AL+ GA D+++KP D + ++ ++ Sbjct: 69 KAGIEWLQDLTAAGFAGEVILITAFADMQTAIDALRAGAADFILKPFRIDQILNSIHRST 128 Query: 122 AHTHSIDAETPAVTA------SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + GM+G SPA+ L + +AP+ +TVLI G+SG GK Sbjct: 129 ERARLARENFLLRRQVAGSGSASDGMIGASPAIGQLRQILHRIAPTPSTVLIQGESGVGK 188 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E+VARA+H S R+E+P V +NCAA++ L+ESELFGH KGAFTGA + R G F A GG Sbjct: 189 EVVARALHQLSPRAEQPFVAVNCAAISAELIESELFGHVKGAFTGAREARNGLFHYAHGG 248 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++ +Q RLLR ++ER+V+ VG+ Q + VDVR++AAT+RDL AEV A RFR Sbjct: 249 TLFLDEIGELPLALQSRLLRVLEERKVRPVGTEQEVPVDVRVLAATNRDLRAEVAACRFR 308 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRL V+ + VP LR+R ED+P LA F+Q+ A + +P+ L+ + WP Sbjct: 309 EDLFYRLEVITLTVPPLRERAEDVPALAAAFMQQLAMQLGLPPLLISPEVSARLMAHPWP 368 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALE 415 GN+REL N VER+++ L + P S L EVEK ILA L+ Sbjct: 369 GNVRELRNFVERSLLFGDFP------LASLAGAVAPPPPASAAPLLLEEVEKRHILAVLD 422 Query: 416 KTGGNKTEAARQLGITRKTLLAK 438 + GGNKT AA LG++RKTL K Sbjct: 423 QCGGNKTRAAELLGVSRKTLERK 445 >UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G869_SORC5 Length = 475 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 201/444 (45%), Positives = 283/444 (63%), Gaps = 8/444 (1%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 IL+VDD+ + L +LR GY A G +AL ++ E D+VL D++M +D Sbjct: 3 SRGRILIVDDEANARAALSEILREEGYTTETAADGFKALGKLEEFAPDVVLTDLKMPGLD 62 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 GI +++ + P ++MTA+ ++ +AVEA+K GA +YL KPLDF L +E+A+ Sbjct: 63 GIRMMEKAQLALPDATFVVMTAFGTISSAVEAVKKGAYNYLTKPLDFSVLAVVVERAVER 122 Query: 124 THSIDAETPAVT-----ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + + + ++ P+M +L + VAPS A+VLI G++GTGKEL+ Sbjct: 123 ARLLQENSRLRERLRERNAFGHVIASHPSMAKVLRLVEQVAPSRASVLIVGETGTGKELI 182 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 A IH +S R++ PLV LNCAAL+ESLLESELFGHE+GAFTGA RREGRF +A GGTLF Sbjct: 183 AEMIHRASPRAKAPLVRLNCAALSESLLESELFGHERGAFTGAVGRREGRFEQASGGTLF 242 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDE+ +I QV+LLR +QER +RVG N+ + VDVR++AA++RDL + G FR+DL Sbjct: 243 LDEVSEIPLATQVKLLRFLQERTFERVGGNETLKVDVRILAASNRDLRQRIAEGVFREDL 302 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYRLNVV +E+P LR+RR DIP LA FL R+A+ N K ++GFT +A+ L Y +PGN+ Sbjct: 303 YYRLNVVTLEIPPLRERRSDIPELATFFLGRYAQENGKRIEGFTDEALSALTSYSFPGNV 362 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP---LVEVEKEVILAALE 415 RELENA+ERA VL G I R LP ++S P + P + ++E+ IL LE Sbjct: 363 RELENAIERAAVLCDGARIELRHLPAQMSSEPAESVDAMPRVPGSTIYDLERYAILRTLE 422 Query: 416 KTGGNKTEAARQLGITRKTLLAKL 439 G+ ++AA LGI+ + + KL Sbjct: 423 ACKGSTSKAATILGISPRKIQYKL 446 >UniRef50_A5G703 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5G703_GEOUR Length = 453 Score = 597 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 194/442 (43%), Positives = 269/442 (60%), Gaps = 9/442 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 + +ILVV+DD +L +L+ G+ V +A G + L ++R++ FDLVL D++M G Sbjct: 2 SANILVVEDDAGFSELLATILKDDGHMVTIATDGGEGLRRIRQERFDLVLSDLKMPVKSG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPL-DFDNLQATLEKALAH 123 + +E + + +TA+ VE AV A+K GA D+L KPL D +L+ ++++AL Sbjct: 62 LELFRETRQDAAPPLFIFITAFGKVEEAVAAIKEGAFDFLTKPLKDPRSLRDSVKRALES 121 Query: 124 THSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + ++ AM + I VAPS ATVLIHG+SGTGKELV Sbjct: 122 VERERLFISLKDMERSGLPPDELIFSGSAMDAVRKMIYDVAPSTATVLIHGESGTGKELV 181 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 AR IH S R + LNCAA+ E+LLESELFGHEKGAFTGA + R G+F A+GGT+F Sbjct: 182 ARMIHLLSKRKGAAFIPLNCAAIPENLLESELFGHEKGAFTGAMQARRGKFELAEGGTIF 241 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG++ ++Q +LLR +QER +RVG + I +VR+IAAT+RDL EV RFR DL Sbjct: 242 LDEIGEMPALLQAKLLRVLQERVFERVGGSMQIRTNVRVIAATNRDLNREVAEKRFRDDL 301 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +YRLNV I VP LR R + + LA +F RFA + K +KG P+A+ L+ Y WPGNI Sbjct: 302 FYRLNVFPITVPPLRARLDALAGLARYFCARFAVKTGKKLKGINPEALRLMKAYHWPGNI 361 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTG 418 REL+N +ER V+L E ++ ELP IA G I L ++E+ IL AL+ Sbjct: 362 RELQNVIERGVILAR-EELTAPELPAMIAGKETEGGPKVGI--LKDIERNCILEALKNNR 418 Query: 419 GNKTEAARQLGITRKTLLAKLS 440 GN+ AA LGI+++TL +L Sbjct: 419 GNRRMAAETLGISKRTLQYRLK 440 >UniRef50_A0LMY2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LMY2_SYNFM Length = 458 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 185/443 (41%), Positives = 264/443 (59%), Gaps = 6/443 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ILVVDDD+ +++A L + V A SG++AL+ ++ DLV+ DVRM M Sbjct: 2 QTKRTILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLKAGAVDLVITDVRMPGM 61 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ EI+ + +PV+ +TAY ++ AV+A+K GA+DYL KP D +L +++ L Sbjct: 62 GGMDLFHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDLVLKVKEILR 121 Query: 123 HT--HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 H ET + +G GKS +M+ L + +APS+ VLI G+SG GKE VAR Sbjct: 122 KPVPHLPAQETISPKHEFWG--GKSASMRELQDLVERIAPSDVNVLILGESGVGKERVAR 179 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH R P V ++C + LLESELFGH +GAFT A + ++G A+ GTLFLD Sbjct: 180 LIHQKGPRRLFPFVVVDCGSTPTGLLESELFGHVRGAFTHAIRDKKGLIEAAERGTLFLD 239 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG+ISP MQVRLLR +++R+++R+G + I V+ R+IAAT+ DL +V AG FR+DLYY Sbjct: 240 EIGNISPEMQVRLLRFLEDRKIRRIGDLREIPVNCRVIAATNVDLPEDVEAGNFREDLYY 299 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL VV + +P LR+RREDIPLLA HFLQ F E + + L Y WPGN+RE Sbjct: 300 RLRVVTLRIPPLRERREDIPLLAQHFLQSFCESQNLPPVRLPQETIRWLSEYPWPGNVRE 359 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPI--PLGQSQDIQPLVEVEKEVILAALEKTG 418 L+NA+E VL + +L L+ P D L E E+ I+ AL++ G Sbjct: 360 LKNALEAGAVLCRESVLRPSDLHLSGLPHAPLKPHVSVGDSLSLEESERNAIVRALQQAG 419 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 + +AA+ LGI+R+ + K+ + Sbjct: 420 WVQKDAAQLLGISRRAINYKIKK 442 >UniRef50_C0QR97 Type 4 fimbriae expression regulatory protein PilR n=1 Tax=Persephonella marina EX-H1 RepID=C0QR97_PERMH Length = 456 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 180/449 (40%), Positives = 268/449 (59%), Gaps = 13/449 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + +VVDD+ + +L LL +G +A++ +A ++E+ +DL L D+R+ + GI Sbjct: 1 MRAIVVDDEKNISELLSILLSEYGIESDIASTYSEARSFIQEKYYDLALLDLRLPDGSGI 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 LK+IK NP V+I+TA++S ETAVEA+K GA DY+ KP + ++L+ + Sbjct: 61 DILKQIKEKNPKTEVVIITAFASSETAVEAIKLGAYDYISKPFNINDLRLIIRNVKEKID 120 Query: 126 SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 G+ GKS A+Q++ I +AP + VLI G+SGTGKE+ A+ IH Sbjct: 121 LERRICVEEEERLEGLAGKSQAIQNVKDTIKKIAPYDINVLIVGESGTGKEVAAKMIHRL 180 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S+R KP V +NCA+L LLESELFG++KGAFTGA ++G EA+GGTLFLDEIG++ Sbjct: 181 SSRKNKPFVAINCASLPAELLESELFGYKKGAFTGAVSDKKGLIEEANGGTLFLDEIGEM 240 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 +Q +LLR ++E+ ++ +GS + I VDVR+I+AT+R+L E+ G FR+DLYYRL + Sbjct: 241 PMPLQAKLLRFLEEQIIRPLGSTKEIKVDVRIISATNRNLEEEIKKGNFREDLYYRLATI 300 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 I++PSLR+R+EDIPLL L+ + K +K +P M LI YD+ GNIREL+N + Sbjct: 301 IIKMPSLRERKEDIPLLVEQILKEIKMKYNKNIKRISPDFMKYLISYDYKGNIRELKNLL 360 Query: 366 ERAVVLLTGEYIS-------------ERELPLAIASTPIPLGQSQDIQPLVEVEKEVILA 412 E+AV+L GE ++ P + L +EK +I Sbjct: 361 EKAVILSDGEELNFIPAFPEKFNSLYIDNPEDEFTVKSFPEEGVDLKEVLSRIEKALIFK 420 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ALEK G K++AA L +T + +LS+ Sbjct: 421 ALEKAEGKKSKAADILRLTFREFRYRLSK 449 >UniRef50_C1SKR5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR5_9BACT Length = 442 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 182/443 (41%), Positives = 272/443 (61%), Gaps = 12/443 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + IL+++D++S T++ L + A +G + L+ + E+ +D+++ D+RM M G Sbjct: 1 MSILLIEDNLSLSTLVSMYLTSENIDNDTAPNGYEGLKLLSEKEYDVLITDIRMPGMSGN 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 +++ L P +PV+I+TA+ ++ AV A++ GA DYL KP + + L +++KA+ + Sbjct: 61 EVMEKAAKLYPDMPVIIITAHGNIPDAVAAIRKGAYDYLTKPFENEELLNSIKKAVEISR 120 Query: 126 SIDAETPAVT----ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 T + MVGKS A +L+ VAP++A VL+ G+SGTGKEL+AR Sbjct: 121 MRRENTRMKQYMKQSIAPKMVGKSEAFIQMLNLADTVAPTDAPVLVLGESGTGKELIARQ 180 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +H+ S R++KP +T+NCAA+ E L ESELFGH+KG+FT AD+ +G+ +EA+GGTLFLDE Sbjct: 181 VHSKSNRADKPFITVNCAAVPEGLFESELFGHKKGSFTSADRDYKGKILEAEGGTLFLDE 240 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ +QV+LLR +QE E+Q VGS + VDVR++AAT+R L G FR DL+YR Sbjct: 241 IGELPQSIQVKLLRFLQESEIQPVGSATPMKVDVRVVAATNRSLKQMTEKGEFRDDLFYR 300 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV +EVP L +RREDI L F ++ R F+ +AM+ LI+Y W GNIREL Sbjct: 301 LNVFPVEVPPLSKRREDIKDLVELFSAKYGAR-----ITFSEKAMEKLINYSWTGNIREL 355 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPI---PLGQSQDIQPLVEVEKEVILAALEKTG 418 EN + R +L I+E +LP S + L E+EK +I+ AL K Sbjct: 356 ENTIYRLCILQGKGEITEDKLPAEFCSNMETCLDMHMPDKELNLEELEKNIIIKALHKFD 415 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 GNK+ AA+ L I R LL +L + Sbjct: 416 GNKSRAAKYLCIPRHVLLYRLEK 438 >UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMI3_ACIF5 Length = 461 Score = 596 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 181/445 (40%), Positives = 259/445 (58%), Gaps = 5/445 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M IL +DDD +L L GY+V ++ Q ++ ++ DLV+ D+RM Sbjct: 1 MPRPAPIILTIDDDPDFLRLLGLWLESEGYHVLASSDPVQGMQTLQTARPDLVITDLRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDG+A L+ ++AL+P +PV+++TA+ S+ AV A++ A YL KP + LQ A Sbjct: 61 GMDGMAVLETVQALDPDLPVILLTAHGSIPNAVAAMRAQAFGYLSKPFSNEELQELTTAA 120 Query: 121 LAHTHSIDAETPAVTASQFG----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 LA H+ A + ++ +SPAM L+ E+A VA S+A+V + G+SG+GKE Sbjct: 121 LAQRHAGQETRKLRAALRQQAGQSILHRSPAMAALVDELACVANSKASVFLSGESGSGKE 180 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 VARAIH +S R + P V +NC A+ L ESELFGH KGAFTGA + G A GGT Sbjct: 181 RVARAIHDASPRRDGPFVAVNCGAIPAGLAESELFGHVKGAFTGATQDHTGLIRSASGGT 240 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEI D+ +QV+LLR +QE ++ VG+ ISVD+R+I+ATH+D+ A G FR+ Sbjct: 241 LFLDEIADLPLTLQVKLLRVLQEGSLRPVGAKTEISVDLRVISATHQDIHALTADGTFRE 300 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRL+V+ + VPSL +R EDIPLLA HFL R ++R + + GF+P+A+D L+ WPG Sbjct: 301 DLYYRLHVIPLRVPSLSERAEDIPLLAQHFLDRESQRMNRDILGFSPEALDKLMQRSWPG 360 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK 416 N+RELENAV A + +++ +P E+ + L Sbjct: 361 NVRELENAVTFAAAVTEKGWVAADAIPDNGRQGGQSAF-PPLQDAKAAFERGYLENLLRA 419 Query: 417 TGGNKTEAARQLGITRKTLLAKLSR 441 T GN + AAR G R L + + Sbjct: 420 TDGNISRAARIAGRHRTDLYKLMRK 444 >UniRef50_C6X591 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteroidetes RepID=C6X591_FLAB3 Length = 507 Score = 596 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 168/440 (38%), Positives = 255/440 (57%), Gaps = 6/440 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 IL++DD+ ++L ++ G+ V A+ + L+++ + D+VLCDV++ + G+ Sbjct: 61 KILIIDDEEKLRSLLTRIIALEGFEVIQASDCQSGLKKLSQSDIDVVLCDVKLPDGSGVE 120 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 K IK P+ ++++TAY ++ V+A+K GA DY+ K D + L KA Sbjct: 121 LAKAIKEKYPSTEIILLTAYGNIPDGVQAIKNGAFDYITKGDDNSRIIPLLYKACEKAAL 180 Query: 127 ID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 S ++GKS ++ + VA ++ T+L+ G++GTGKE+ A+A Sbjct: 181 ARRVQHLERQLEKKHSLTNIIGKSRTIRQAVELAKKVAGTDTTILLTGETGTGKEVFAQA 240 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH S R + V +NC+A + LLESE+FGH+ GAFTGA K R+G F EA GT+FLDE Sbjct: 241 IHQESTRRTEHFVAINCSAFSRDLLESEMFGHKAGAFTGAAKDRKGLFEEAHNGTIFLDE 300 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 +G+++ +Q +LLR I+ E +VG + V+VR+IAAT+RDLA ++ G FR+DL+YR Sbjct: 301 LGEMALDLQAKLLRVIESGEFIKVGETKPTKVNVRIIAATNRDLAHQIALGHFREDLFYR 360 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 ++V I +P+LR R EDI +LA HF+ F + K + P + L H+ W GNIREL Sbjct: 361 ISVFQIPLPALRDRTEDIAVLAQHFVDFFGHKMNKKILSVDPGFITALQHHAWKGNIREL 420 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPI-PLGQSQDIQPLVEVEKEVILAALEKTGGN 420 +N +ERAV+L +G ++ +LP+ I P G+ L VEK I L T GN Sbjct: 421 KNVIERAVILSSGTELAPDDLPIDIQFHPSVKSGKQLSAFSLQSVEKLHIQKVLNHTQGN 480 Query: 421 KTEAARQLGITRKTLLAKLS 440 K EAAR L I TL K+ Sbjct: 481 KAEAARLLEIGIATLYRKIE 500 >UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZVL8_DESOH Length = 449 Score = 596 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 186/442 (42%), Positives = 277/442 (62%), Gaps = 7/442 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 I+VVDD+ L+ +L G+ V+ ++ R+AL+ + D+++ DVRM MDG+ Sbjct: 4 HIVVVDDEPITLKQLRRILEKEGHRVSAFSNPRRALDHIESNSCDVLISDVRMPAMDGME 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 + +KA P I V+++T Y+S++ AVEA++ GA YL KP D ++ + +AL + Sbjct: 64 LMTRVKARFPDIEVILITGYASLDGAVEAVREGAFHYLEKPFTPDRVRERVGQALHLLSA 123 Query: 127 IDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + P ++G+ ++ ++S I + P+E VLI GDSG+GKELVARA Sbjct: 124 RRSARPGAQGEDRNDAGPVIIGQGARIREVVSIIGQIGPTECNVLITGDSGSGKELVARA 183 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IHA+S RS P + NC AL+E+L+++ELFGHEKGAFTGA+ R G A GGTLFLDE Sbjct: 184 IHAASRRSAGPFLAFNCGALSETLIDNELFGHEKGAFTGAESRGIGLVEAASGGTLFLDE 243 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ MQV+LLR +QE E+ RVG ++ + VDVR+++AT D+ A V G FR+DLY+R Sbjct: 244 IGEMPTAMQVKLLRVLQEGELMRVGGSRPVPVDVRIVSATAADIKAAVGEGIFRKDLYFR 303 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 +NVV I++P L +RREDIPLLA H L R + K ++ + +AM LL Y +PGN+REL Sbjct: 304 INVVNIKLPGLAERREDIPLLAYHILSRLNRQGGKNIQAISEKAMALLSGYAFPGNVREL 363 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD--IQPLVEVEKEVILAALEKTGG 419 EN +ERAV + GE I E +LP + + + + D L E+E++ + L+ TGG Sbjct: 364 ENILERAVAICQGEIIRECDLPPDLVALELQAYRPPDETFMTLAELERDYMAHLLKITGG 423 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 ++ A LGI R +L K+ + Sbjct: 424 ARSRTAEILGIDRASLWRKMKK 445 >UniRef50_Q1IQW5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1IQW5_ACIBL Length = 461 Score = 596 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 182/442 (41%), Positives = 262/442 (59%), Gaps = 5/442 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT +IL+VDD+ + L R G+ + ++ +ALE + + FDL+L DV M Sbjct: 1 MT-AKAEILIVDDEANTLASLSRAFRLAGHEATVCDNAVRALEIAKSKPFDLILSDVVMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 DG+ L+++K PV++M+ + +E AV+A + GALD+L KPL D L T+E A Sbjct: 60 GRDGLTLLEDLKTAGVQAPVVMMSGQAHIEMAVKATRLGALDFLEKPLSTDKLLLTVENA 119 Query: 121 LAHTHSIDAETPAVTA-SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 L + + +V K AM+ ++++I VA SEA V I+G++GTGKEL A Sbjct: 120 LKLKRLETENRDLRSRVGKHEIVWKGEAMRRVMAQIDRVAASEARVCIYGETGTGKELAA 179 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 R +H S R P +TLNCAA+ L+ESELFGHEKG+FTGA +R G+F +A GTLFL Sbjct: 180 RTLHEKSPRKAGPFITLNCAAVPAELIESELFGHEKGSFTGAAQRHIGKFEQAHRGTLFL 239 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ MQ +LLR ++E EV+RVG ++ I VDVR+I ATHR+L V G+FRQDL+ Sbjct: 240 DEIGDMPLAMQAKLLRVLEEGEVERVGGDKSIPVDVRVIVATHRNLEDLVKEGKFRQDLF 299 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 +R+ V + +P LR RREDIP+L HF + +N FT +A++ L Y WPGN+R Sbjct: 300 HRVYVFPLILPPLRTRREDIPVLLEHFAAQVCLQNGWKPVPFTAEAVEALQRYSWPGNVR 359 Query: 360 ELENAVERAVVLLTGEYISERELPLAIAS---TPIPLGQSQDIQPLVEVEKEVILAALEK 416 E+ N VER ++L + + LA+ G + + E+EVILA L++ Sbjct: 360 EMRNVVERLLLLAVAGEVDRATVELALPEAQTATSDTGSGPLSSRVAQYEREVILAELQR 419 Query: 417 TGGNKTEAARQLGITRKTLLAK 438 + T A+ LG+ R L K Sbjct: 420 QKHHITNTAKALGLERSHLYKK 441 >UniRef50_A8MKV1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MKV1_ALKOO Length = 440 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 177/443 (39%), Positives = 257/443 (58%), Gaps = 14/443 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 +L+VDD+ +L+ L GY+V ++N +AL + E FD+ L D+ M M Sbjct: 1 MRRCRVLLVDDEEKFIELLKQRLTRKGYSVEISNCSLKALNMIEETEFDVALFDIMMNGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+A L++ K + P + ++++T Y++V+TA+EA+K GA DYL KP+ L+ L+KAL Sbjct: 61 DGLALLEKAKKIQPNLEIIMLTGYATVDTAIEAMKKGAYDYLTKPIKPIELELILQKALD 120 Query: 123 HTHSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 D ET T + ++G S A+ L I V+ S VLI G+SGTGKEL Sbjct: 121 RKKLQDYSNNLIETIQRTNKKREIIGNSDAIISLKYMIDRVSDSSLPVLILGESGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VA A+H S R+ P V +N +A+ LLESELFGH KGAFTGA ++G AD GTL Sbjct: 181 VANALHYHSLRAHHPFVPINASAIPSQLLESELFGHVKGAFTGAQVNKKGLVELADEGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIGD+ +QV+LLR + E + VG +VR++AAT+ +L + GRFR+D Sbjct: 241 FLDEIGDMEASLQVKLLRFLDTGEFRPVGGTVTKKTNVRVVAATNINLEQAIEEGRFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRL+VV + VP LR+R D +LA +FL++ + K + +A L++Y +PGN Sbjct: 301 LYYRLSVVTLNVPPLRERGRDALVLAEYFLRQSNSK-----KKLSKEAEMFLLNYTFPGN 355 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKT 417 +REL N +ER ++L + + + + L ++EKE I LEKT Sbjct: 356 VRELANLIERGILLSKDNDLYPNDF----FARETYSKNNMKSLALQDIEKEHICQVLEKT 411 Query: 418 GGNKTEAARQLGITRKTLLAKLS 440 G NKTEAA+ L I +TL K+ Sbjct: 412 GWNKTEAAKILKIGLRTLYRKIE 434 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 172/468 (36%), Positives = 269/468 (57%), Gaps = 33/468 (7%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M + ++ ++DD+ S TI + L +NV +S +AL + DL++ D++M Sbjct: 1 MKMN--NVWIIDDEESIRTICTSALEDL-FNVESFSSASEALLALNSTTPDLIITDIKMP 57 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M G+ L ++ P +P +I+TA+++++ A+ A K GA +YL KP D + ++ KA Sbjct: 58 GMSGLEFLDKVSEKFPNLPTIIITAHANIDNALSAYKGGAFEYLTKPFDINEIRKLAIKA 117 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + S +VGK+ +MQ + I ++ ++ TVLI G+SGTGKEL+A+ Sbjct: 118 TKSSK--PQHDELTQESNSQIVGKAESMQEVFKAIGKISKTDITVLIRGESGTGKELIAQ 175 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 ++H +S+RS +P + +N AA+ LLESELFGHEKG+FTGA +R GRF +A GGTLFLD Sbjct: 176 SVHENSSRSNQPFIAINVAAIPHELLESELFGHEKGSFTGAQSQRIGRFEQALGGTLFLD 235 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ P +Q RLLR + E RVG + I DVR+IAAT++++ + G+FR+DLY+ Sbjct: 236 EIGDMHPELQTRLLRVLSSHEFYRVGGQKPIKSDVRIIAATNQNIEGLIKVGKFREDLYH 295 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV IE+P LR+R+EDIP L +FL++ A+ + +K AM++L YDWPGNIR+ Sbjct: 296 RLNVFRIELPPLRKRKEDIPSLVKYFLKKSADEIKSDLKDIEDPAMEVLNEYDWPGNIRQ 355 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPL------------------ 402 LEN V+ I+ ++P + + + LG L Sbjct: 356 LENTCRYITVMAPSTSITLDDIPDEVKNVDMSLGDPNHFNGLGSNGNWEESLSNHIRSVL 415 Query: 403 ----------VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 ++EK ++ AL+ + G + +AA+ LGI R T+ K+ Sbjct: 416 QDMNDLTNLSKDLEKILLQEALKASKGRRIDAAKILGIGRNTITRKIK 463 >UniRef50_Q7MM78 Regulatory protein luxO n=19 Tax=Proteobacteria RepID=LUXO_VIBVY Length = 453 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 172/441 (39%), Positives = 260/441 (58%), Gaps = 11/441 (2%) Query: 11 VDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKE 70 V+D S + ++ L G ++ + +GR A++ ++ ++ DL+L D+R+ +M G+ L Sbjct: 2 VEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHA 61 Query: 71 IKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDAE 130 +KA +P +P++ MTA+ S++TAVEA++ G+ D+LIKP + D L+ T+ A+ + + Sbjct: 62 VKASHPDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKND 121 Query: 131 TP-AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARS 189 A + + G +G S MQ + I A S+A++ I G+SGTGKE+ A AIHA+S R Sbjct: 122 ADSAGSQNYQGFIGSSQKMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASRRG 181 Query: 190 EKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMM 249 +KP + +NCAA+ + L+ESELFGH KGAFTGA R+G ADGGTLFLDE+ ++ + Sbjct: 182 DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLDL 241 Query: 250 QVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEV 309 Q +LLR IQ Q+VGS+++ SVDVR + AT+RD EV GRFR+DLYYRL V+ + + Sbjct: 242 QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL 301 Query: 310 PSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAV 369 P LR+R ED+ +A L + K F+ +D Y+WPGN+R+L+N + V Sbjct: 302 PPLRERGEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVV 361 Query: 370 VLLTGEYISERELPLAIASTPIPLGQSQ----------DIQPLVEVEKEVILAALEKTGG 419 VL G+ I+ LP + Q DI PL EK I A++ G Sbjct: 362 VLNNGKEITMEMLPPPLNQPFERKESVQPDLSELISVRDICPLWLTEKLAIEQAIKACDG 421 Query: 420 NKTEAARQLGITRKTLLAKLS 440 N AA L ++ T+ KL Sbjct: 422 NIPRAAGYLDVSPSTIYRKLQ 442 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 169/434 (38%), Positives = 263/434 (60%), Gaps = 19/434 (4%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L++DD+ L+ + G++ Q L + F L++ DV+M +MDG+ Sbjct: 3 SVLIIDDEPDMGFALKEGMSRLGFDAHYYRDPSQLLSNINFSDFSLIITDVKMPKMDGLQ 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 L+EI+ PV+++T Y +VE AV A+K GA+DY++KP + L++ + + + Sbjct: 63 LLEEIRKRGIFTPVIVITGYGNVEDAVRAMKLGAVDYIMKPFSMETLKSLVSRLI----- 117 Query: 127 IDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS 186 Q +V +S M+ +L + +A ++ TVL+ G+SG GKE++AR IH S Sbjct: 118 ---------PEQDEIVAESREMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIHKHS 168 Query: 187 ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS 246 RS +P V +NCAA+ E+LLE+ELFGHEKGAFTGA +R+ G+F A+ GT+ LDEI +++ Sbjct: 169 PRSNQPFVAINCAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEISEMA 228 Query: 247 PMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 +Q +LLR IQE+E+ RVG + I +DVR+IA T++DLA EV G FR+DL+YR+NV Sbjct: 229 YRLQAKLLRVIQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFP 288 Query: 307 IEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVE 366 I +P LR+R +DI LA FL+R + + K T L+ W GN+RELEN + Sbjct: 289 IRIPPLRERSDDIIPLAEFFLKRLSNKMSKNF-TITEDMKKFLLKKSWQGNVRELENFIY 347 Query: 367 RAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAAR 426 R+ VL + E + + P+ + L + E+E+I+ AL+KT GN+T+AA+ Sbjct: 348 RSAVLSQDGILRLHEDEINLFEEEKPVKAGK----LKDAERELIVDALKKTEGNRTKAAK 403 Query: 427 QLGITRKTLLAKLS 440 LGI+ +TL K++ Sbjct: 404 ILGISVRTLRNKIN 417 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 191/452 (42%), Positives = 270/452 (59%), Gaps = 13/452 (2%) Query: 1 MTHD-NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRM 59 MT D I L+VDD S + A+ G+ + A S AL + Q D++L D+RM Sbjct: 1 MTDDYRIRFLIVDDQQSIRKLCIAIGNTLGFICSEAESAEAALAALETQSPDIILADLRM 60 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 E+ GI L +K L P V IMT Y S+ETAV+++K GA DY+ KP + L+ L++ Sbjct: 61 GELSGIDFLASVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFRVEELKIILQR 120 Query: 120 ALAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTG 174 + G+VG S +Q +L + + + VLI G+SGTG Sbjct: 121 MAEKVRLVAENHFLRERVNTEMELHGIVGSSAKIQDVLRMVGRLKDTRTPVLICGESGTG 180 Query: 175 KELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADG 234 KELVARA+H +++P V ++C +L +L+ESELFGHEKGAFTGA K +EG F A+G Sbjct: 181 KELVARAMHFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGAIKPKEGLFQAANG 240 Query: 235 GTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRF 294 GT+FLDEIG++ +Q +LLR +Q+++V+ VGSNQ + VDVR+IAAT+RDL A G F Sbjct: 241 GTIFLDEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAATNRDLEAGYKTGTF 300 Query: 295 RQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 R+DLY+RLNVV + +PSLR+R+ DIP L HF+ R + + T QAM L+ YDW Sbjct: 301 RKDLYFRLNVVTVYLPSLRERKSDIPSLIQHFIDRPSA--GREGVEVTSQAMKSLMQYDW 358 Query: 355 PGNIRELENAVERAVVLLTGEYISERELPLAIAS-----TPIPLGQSQDIQPLVEVEKEV 409 PGN+RELEN +ERAV L GE I +LP ++ + + + D L ++E+ Sbjct: 359 PGNVRELENCIERAVALGNGEVIDVDDLPPSLQAMAPKKNAPAVSEGYDSTDLEDIERTT 418 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 I ++ GG+K A + LGI+R TL K+ R Sbjct: 419 IQRVFDQVGGDKGLALKMLGISRATLYRKIKR 450 >UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=B3E6U1_GEOLS Length = 467 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 178/458 (38%), Positives = 267/458 (58%), Gaps = 18/458 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT D IL++D++ C +++ +L GY V S +A+E+ +DLV+ D++M Sbjct: 1 MT-DKQRILLIDNEEGLCRMMEQVLLDSGYLVRAYTSPVKAMEEFSAAAWDLVITDIKMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M G+ L+ +K +PV+I+TAY++VE +++AL+ GA D L KP + D L ++ A Sbjct: 60 GMTGLEVLQRVKEKCRDLPVIIITAYATVEMSIQALRKGAYDMLTKPFEPDELVFRVKNA 119 Query: 121 LAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + ++G S A++++L ++A VA + ++LI G+SGTGK Sbjct: 120 LQQAQLTEENRELRREIEEKLQFDNIIGSSGALRNVLDKVAKVAGRDTSILITGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+A+A+H S R E + +NC L ES+LESELFG+ KGAFTGA + R+G ADGG Sbjct: 180 ELIAQAVHIHSNRKEGRFMAVNCGGLPESILESELFGYRKGAFTGAAENRQGLLEAADGG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDE+G++ +Q LLR +QE+E +RVG VDVR+I+AT+ DL V G FR Sbjct: 240 TLFLDEVGNLPMNVQKTLLRFLQEKEFRRVGDTNSTRVDVRIISATNADLKEGVRTGTFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYRLNVV + +P LR R +DIPLLA HF+ ++ AVK F AM +L ++WP Sbjct: 300 EDLYYRLNVVNLHLPPLRDRIDDIPLLAAHFIHLQNQKFGTAVKAFERDAMQILCTFEWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISEREL------------PLAIASTPIPLGQSQDIQPLV 403 GNIR+L N +E + + +YIS L P + + P+ + L Sbjct: 360 GNIRQLRNVIEACMAMEASDYISLDTLGQVIDLPEGRIVPATVQAGPVLSDDLPFTEALE 419 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E++++ L+K GG AAR+ G+ TL K+ R Sbjct: 420 RFERDLLRDLLKKHGGAVDSAAREAGMNVATLYRKIKR 457 >UniRef50_C0GVH4 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfohalobiaceae RepID=C0GVH4_9DELT Length = 470 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 185/461 (40%), Positives = 260/461 (56%), Gaps = 22/461 (4%) Query: 3 HDNIDILVVDDDISHCTILQALL--RGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 ++++DD+ L +L V +S LE ++ Q D++L D+RM Sbjct: 1 MSKQRLMIIDDEKDMLQGLSRILPQELENIQVETFSSALSGLESIKRQPVDVLLLDIRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDG+ L +K ++P I V+++TAY S+ETAVEA+K GA D++ KP + +L L KA Sbjct: 61 EMDGMEVLTAVKEIDPWITVVMITAYGSIETAVEAIKKGAYDFITKPFEIPDLVRVLNKA 120 Query: 121 LAHTHSIDAETPAVT-----ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + I VG+SP M+ L I +A ++ TVLI G+SGTGK Sbjct: 121 LERSLLIRENMNLRKKVSEKEPFADFVGQSPPMRRLYDGIQALAGTDYTVLIRGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARA+H S RS + +VT+NC A+ E LLESELFGH+KGAFTGA++ G F+EAD Sbjct: 181 ELVARALHELSPRSSRRMVTVNCPAIPEHLLESELFGHKKGAFTGAEQNHTGMFLEADKS 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TL LDEIGD+ +Q +LLR +QEREV+ +GS++ VDVR+++ T++DL A + FR Sbjct: 241 TLLLDEIGDLPVSIQTKLLRVLQEREVRPLGSDKSRKVDVRILSCTNQDLEARIQDRSFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYRLNVV + PSL + EDIPLLA HFL+ +K F+ A+ ++H WP Sbjct: 301 EDLYYRLNVVTLRTPSLSEITEDIPLLADHFLRSVCNELGLPLKRFSVAAIQSMMHKSWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP-------------- 401 GN+REL+N V R + E I ++ +A S QD Sbjct: 361 GNVRELQNFVRRVALFSPEEEIGAADIRVAQDSLYGSAESRQDQDSNGKAVKPYQQAKEE 420 Query: 402 -LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L +E I L +T GN T A+ GI+R L + R Sbjct: 421 LLENFTREYITRLLGQTEGNVTRASDIAGISRTALQKIMRR 461 >UniRef50_A0LL20 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL20_SYNFM Length = 441 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 181/442 (40%), Positives = 265/442 (59%), Gaps = 3/442 (0%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M + ILV+DD +LQ L G+ V + +A+ + Q LV+ D+RM Sbjct: 1 MADERTSILVIDDSRDTLEVLQRNLVSRGFQVLAVSEVSEAIRLLETQNISLVITDIRMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++DG + ++ ++ + VL +T + +++ A+ A+KTGA +YLIKP + L + ++ A Sbjct: 61 KVDGFSVIRHVRENCKGVEVLAITGFPTIDGAIRAMKTGAGEYLIKPFTDEELFSAIDHA 120 Query: 121 LAHTHSIDAETP-AVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 LA +P A Q+G++G+S AM + I A S ATVLI G+SGTGKEL+A Sbjct: 121 LARLRLKKQASPSAAPRRQYGIIGESRAMMQVYEAIEHAASSSATVLIQGESGTGKELIA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH S R+ P V +NC + E LLESELFG+ KGAFTGA R G F AD GT+ L Sbjct: 181 RAIHYGSRRAGFPFVPVNCGGIPEPLLESELFGYTKGAFTGAAGSRAGFFQTADRGTILL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEI + S MQ++LLR +QE E+ +GS++ V++R++AAT+R L V G FR+DL+ Sbjct: 241 DEISEASLPMQIKLLRVLQEGEICMLGSSKPRKVNIRIVAATNRVLHELVRQGLFREDLF 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRLNV+ I+ P LR R +DI LL HF++ F+ER + + + +L Y WPGN+R Sbjct: 301 YRLNVITIDAPPLRDRGDDIVLLVNHFVKTFSERYGRTPPRLSEALLGILRAYHWPGNVR 360 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGG 419 ELEN + R + + + + +LP + + +G+ + L EVE E + L+ GG Sbjct: 361 ELENVIHRLLSMPSSTTLDIPDLPPFMRFSA--VGEGSLNRTLAEVEAEHVRRVLDSVGG 418 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 NKT AAR LG+ RKTL AKL + Sbjct: 419 NKTLAARILGVDRKTLRAKLRK 440 >UniRef50_C7PUT4 Two component, sigma54 specific, transcriptional regulator, Fis family n=36 Tax=Bacteroidetes RepID=C7PUT4_CHIPD Length = 449 Score = 594 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 168/439 (38%), Positives = 265/439 (60%), Gaps = 6/439 (1%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +L++DD+ ++ + ++ G+NV A + + A + + ++ D+VLCDV++ + G+ Sbjct: 4 TVLIIDDEEKLRSLTKRIIALEGFNVLEAGNIKSAQKIIEKEEIDVVLCDVKLPDGSGVD 63 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 + IK NP+I ++++TAY ++ V+A+K GA DYL K D + + L +AL Sbjct: 64 YARTIKEKNPSIEIILLTAYGNIPDGVQAIKNGAFDYLTKGDDNNRIIPLLNRALEKVQL 123 Query: 127 IDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 + S ++G S ++ + + + VAP++ TVL+ G++GTGKE+ A+A Sbjct: 124 QKRIEKLESQVGKKYSFDTILGTSRPIRDAIEQASKVAPADTTVLLLGETGTGKEVFAQA 183 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R+ KP V LNC+A + LLESELFG++ GAFT A++ ++G EA+ GT+FLDE Sbjct: 184 IHNNSKRNGKPFVALNCSAFSRELLESELFGYKAGAFTNANRDKKGLIEEANTGTIFLDE 243 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ +Q +LLR ++ E +VG + V+VR+IAAT+RDL E G FR+DLYYR Sbjct: 244 IGEMPLDLQSKLLRVLETGEFIKVGDTKPTKVNVRIIAATNRDLKEESQKGHFREDLYYR 303 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV AI +P LR+R++DIP LA +F+ F+ + + + TP ++ L ++W GNIREL Sbjct: 304 LNVFAITLPPLRERKKDIPQLAEYFVGIFSAKINQRKQKVTPAFIEKLQLHEWKGNIREL 363 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNK 421 +N +ERAV++ G+ ++ LPL + L VEK I+ L T NK Sbjct: 364 KNVLERAVIMAGGDDLAVEHLPLDLQIADK-ASTPLSAFDLASVEKLHIIRVLYHTKNNK 422 Query: 422 TEAARQLGITRKTLLAKLS 440 TEAAR L I TL K+ Sbjct: 423 TEAARLLNIGLATLYRKIE 441 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 182/444 (40%), Positives = 264/444 (59%), Gaps = 9/444 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + +L+ +DD ++ L GY V G QAL + + FDLVL DVR+ +DG+ Sbjct: 1 MKLLLAEDDRIVRVTVRDALEEAGYQVTACADGAQALAAIEREPFDLVLTDVRLPGVDGL 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT- 124 + + P V++MTAY+ + AV ++ GA DY+ KP + D L +++ Sbjct: 61 TLFRRTRRAQPDAGVVLMTAYADADDAVSVMREGARDYVQKPFEMDELLLRMQRVRDEHA 120 Query: 125 -HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 G++G S M+ + + A S+ VL+ G++GTGK+L AR IH Sbjct: 121 FRKGMQAGAPPGPEAGGVLGDSAPMRRVRDRLDAAAASDVPVLVTGETGTGKDLCARTIH 180 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S R+ +P V +NCAA+ E+L ESELFGHEKGAFTGAD++R GRF ADGGTLFLDE+G Sbjct: 181 ERSHRAGRPFVVVNCAAIPEALFESELFGHEKGAFTGADRKRIGRFEAADGGTLFLDEVG 240 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 +++ Q +LLRA++ + VGSN+ + VDVR+IAAT+RDLA+ + G FR+DLYYRLN Sbjct: 241 ELAASSQAKLLRALESSTFEPVGSNRSVRVDVRVIAATNRDLASAIARGAFRKDLYYRLN 300 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 V+ + P LR+RR D+P+L FL R A R + V P + L +D+PGN+REL++ Sbjct: 301 VIDLHAPPLRERRGDVPVLTAAFLARIAGRLGRPVPQLEPAVVAALAAHDYPGNVRELQH 360 Query: 364 AVERAVVLLTGEYISERELPLAIAST-------PIPLGQSQDIQPLVEVEKEVILAALEK 416 A+ERAV L G I LP +A P G ++ + + + E++ I ALEK Sbjct: 361 ALERAVALARGGPIRLEHLPPDLAGPLPAGEAAPAGEGLARLGEAVEQFEQQYIRRALEK 420 Query: 417 TGGNKTEAARQLGITRKTLLAKLS 440 TGG++ AA LGI+RK+L +L Sbjct: 421 TGGHRARAAALLGISRKSLWERLR 444 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 187/454 (41%), Positives = 266/454 (58%), Gaps = 18/454 (3%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + IL+VDD+ + IL+ L+ G+ A +GR+AL +++Q DLV+ D+ M Sbjct: 8 PNPESRILIVDDEGTSLLILENYLQHHGHVAICAANGREALALLKKQPVDLVISDLVMPG 67 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 M GI + K +P +P + TA S+E+AV A+K GA DYL KPLD +++AL Sbjct: 68 MGGIEFMDLAKERHPGLPFIFYTALGSIESAVSAIKQGAFDYLEKPLDPKTFDVVIQRAL 127 Query: 122 AHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSE-ATVLIHGDSGTGK 175 S +V +SPAM+ +L + VA S TV + G+SGTGK Sbjct: 128 EFARLSHENVQLREHFAELFSFQNIVTQSPAMRTVLELASRVAASPRTTVSLTGESGTGK 187 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E++ARAIH +S V +NCAA+ E+LLESELFGH +GAFTGA++ REG+F A GG Sbjct: 188 EVLARAIHFASGCLPSNFVAVNCAAIPEALLESELFGHVRGAFTGAERDREGKFSLARGG 247 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 T+ LDEIGD+ +Q +LLR ++ER ++VG N+ VD R+I AT+RDLA V GRFR Sbjct: 248 TVLLDEIGDMPLPLQAKLLRVLEERTFEKVGDNRPQPVDFRVIVATYRDLAQLVRKGRFR 307 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLY+R+NVV I +P LR+R EDIPLL FL+ F + KA+ G + +AMDLLI + WP Sbjct: 308 EDLYHRINVVPIAIPPLRERLEDIPLLVDFFLKLFRQHQGKALPGVSKKAMDLLIAHSWP 367 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPI------------PLGQSQDIQPLV 403 GN+REL N +E A ++++ E I L L+ +S + + L Sbjct: 368 GNVRELRNVLEYAAIMVSDELIRPEHLRLSSSSPSASALPSSSGTVEFHISLPAEDVSLD 427 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLA 437 V V+ +AL++ GNK+ AA L + RK Sbjct: 428 AVVSRVLESALQRCHGNKSRAAALLKVNRKMFYR 461 >UniRef50_B5EJI5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidithiobacillus RepID=B5EJI5_ACIF5 Length = 455 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 189/439 (43%), Positives = 262/439 (59%), Gaps = 2/439 (0%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + IL+V+D+ + ++L A L G++ A S AL + ++ LVL D R+ M Sbjct: 1 MRSQKILIVEDEKNLRSVLAATLEAEGFSTAQTESAEDALAIMARELPVLVLTDQRLPGM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G L IK P PVLI TAY +E AV+A+K GA YL KP+D L A + +AL+ Sbjct: 61 SGTELLARIKERWPRTPVLIATAYGEIEQAVQAIKAGAEHYLTKPVDEGELVAIIRQALS 120 Query: 123 HTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + + + G++G+SP +L I LVAP+ + VLI G+SGTGKE+VAR + Sbjct: 121 CRGHTN-PPRSQDLPRHGIIGESPGTLEILEMINLVAPAPSNVLITGESGTGKEMVARGL 179 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H +S R+ P + NC A+ L+ESE+FGHEKGAFTGA + + G+ A GTLFLDE+ Sbjct: 180 HVASPRAHAPFLAFNCGAIPLDLVESEIFGHEKGAFTGAVRSQAGKLEMAGSGTLFLDEV 239 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+ MQV+LLR +QERE R+G NQ + + R+IAATH DLA V AG FR+DLYYRL Sbjct: 240 GDMPLAMQVKLLRTLQEREYTRLGGNQPLRLAARIIAATHVDLAKAVEAGSFREDLYYRL 299 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ + +P LR+RRED+ L HFL+R + A+ + Y WPGNIR+LE Sbjct: 300 NVIPLHIPPLRERREDVAPLVHHFLRRVCTELGRPEVDIATAALAAMEAYSWPGNIRQLE 359 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPLGQS-QDIQPLVEVEKEVILAALEKTGGNK 421 N VER VVL G I +LP + +T + L VE+E +++AL K NK Sbjct: 360 NIVERLVVLNRGGTILAADLPNEMRTTETERIRPFGGAYDLHAVEREAVVSALNKAQSNK 419 Query: 422 TEAARQLGITRKTLLAKLS 440 ++AA LGI+RK L ++ Sbjct: 420 SQAALLLGISRKQLHTRMK 438 >UniRef50_B9XL82 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XL82_9BACT Length = 476 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 182/464 (39%), Positives = 266/464 (57%), Gaps = 25/464 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ +L+++DD L+ +L GY V+ G L FD+V+ D+++ Sbjct: 1 MSVKR-TLLLIEDDAGAADALRRVLVNEGYTVSCEGRGDSGLGTAETINFDVVISDLKLP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +DG+ +K + P +P+++MTA+ + ETA+EA K GA DYL+KP + + L +EKA Sbjct: 60 GLDGLELVKRLHQAKPRLPIILMTAHGTTETAIEATKLGAYDYLLKPFEMEELLDLVEKA 119 Query: 121 LAHTHSIDAETPAVT--ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + + + +++ ++G S MQ + EI VA TVLI G++GTGKEL+ Sbjct: 120 VESSRLMSEPVKMGECVSARNAIIGNSRLMQGIYKEIGRVAAKPITVLIRGETGTGKELI 179 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARAI+ S RS P V +NCAA+ E+LLESELFGHE+GAFTGAD RR GRF +A GGTLF Sbjct: 180 ARAIYQHSDRSAAPFVAVNCAAIPETLLESELFGHERGAFTGADMRRIGRFEQASGGTLF 239 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIGD+S Q +LLR +QE+ + R+G + I +D R+IAATHRDL ++ +FR+DL Sbjct: 240 LDEIGDMSLNTQAKLLRVLQEKYIHRLGGREPIPIDARVIAATHRDLEKALHDKQFREDL 299 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYRLNV I+ P+LR R EDIP L + +Q + P+A+ L + WPGN+ Sbjct: 300 YYRLNVAVIKTPALRHRSEDIPNLVRYLMQIYGADFDIESPSIQPEALQFLQNQPWPGNV 359 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP----------------- 401 RELEN V + ++L IS + +A + Sbjct: 360 RELENVVRQVLLLAGRYTISIEHVREVVAKVGEAVAGGNQSIAAGIGTYLSRARRGEMEG 419 Query: 402 -----LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + EVE+E+ A+E GN+ +AAR LG++R T+ KL+ Sbjct: 420 VHATVIEEVERELFGQAIELAQGNQAKAARWLGVSRITMREKLN 463 >UniRef50_A6KXD6 Two-component system response regulator n=40 Tax=Bacteroidetes RepID=A6KXD6_BACV8 Length = 460 Score = 593 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 189/458 (41%), Positives = 278/458 (60%), Gaps = 21/458 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M H IL+V+DD++ T+L+ L G++V A+S +A +Q+ Q +DLVL D+R+ Sbjct: 1 MPHS---ILIVEDDLTFATMLKTWLGKKGFSVDTASSNARARKQLDAQPYDLVLSDLRLP 57 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + DGI L +K IP++IMT Y+ +++AV+A+K GA DY+ KP+ D L + +A Sbjct: 58 DQDGIFLLSWMKEQKYNIPLIIMTGYADIQSAVQAIKHGASDYISKPIQPDELLKKINEA 117 Query: 121 LAHTHS-----IDAETPAVTASQFGMV-------------GKSPAMQHLLSEIALVAPSE 162 L + I+ T A AS+ V G+S A + L + + LVAP+ Sbjct: 118 LQNKALPTPVGIEKNTVAPKASKNKAVPHSATVPPSNFLEGESEAARQLYNYVGLVAPTP 177 Query: 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGAD 222 +VLI+G SGTGKE VA IH S R++KP + ++C ++ + L SE FGH KG+FTGA Sbjct: 178 MSVLINGASGTGKEYVAHRIHQLSKRADKPFIAIDCGSIPKELAASEFFGHVKGSFTGAL 237 Query: 223 KRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATH 282 + G FVEA+GGTLFLDEIG++S +Q++LLRA+QER ++ VGSN+ I VDVRL++AT+ Sbjct: 238 NDKTGAFVEANGGTLFLDEIGNLSYEVQIQLLRALQERRIRPVGSNKEIEVDVRLVSATN 297 Query: 283 RDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFT 342 +L + G FR+DLY+R+N + +P+L++R+EDI L A FL + + + GF Sbjct: 298 ENLQQAIEKGNFREDLYHRINEFTLRMPALKERQEDILLFANFFLDQANRELDRQLIGFD 357 Query: 343 PQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPL 402 A L Y WPGN+R+L+N V+RA +L +I+ EL + G Sbjct: 358 TAASQALQTYSWPGNLRQLKNIVKRATLLAQSNFITLAELGYELQEPIRSAGPQTFSLHD 417 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 EK+ IL AL++TG NK++AA LGI RKTL KL Sbjct: 418 EAAEKKRILEALKQTGNNKSKAAILLGIDRKTLYNKLK 455 >UniRef50_Q1NQN0 Helix-turn-helix, Fis-type n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NQN0_9DELT Length = 480 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 185/457 (40%), Positives = 263/457 (57%), Gaps = 19/457 (4%) Query: 3 HDNIDILVVDDDISHCTILQALLRGW-GYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 H+ +LVVDDD T+L LL V SG AL + D++ D+RM Sbjct: 10 HEKPLVLVVDDDAEMLTMLVRLLNRKFDCRVETVASGEAALACLDRNRPDVITTDLRMPG 69 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 +DG++ L ++K +P I V++MT Y ++E AV +L+ GA D++ KP D + + +LE+ L Sbjct: 70 LDGMSLLTQVKEHHPEIAVIVMTGYGNIELAVRSLREGAYDFIEKPFDQERIVHSLERCL 129 Query: 122 AHTHSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + + G+ G S MQ + I VA + TVLI G+SGTGKE Sbjct: 130 ERVRLLQENRYLQERLSTQEAFCGLHGCSYRMQEVFDLIRKVANTNVTVLIRGESGTGKE 189 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L +A+H S R+ KPLVT+NC AL +LESELFG+ KGAFTGA + + G F+EADG T Sbjct: 190 LAVKALHTLSRRAAKPLVTVNCPALPAEILESELFGYVKGAFTGAAQDKSGYFLEADGST 249 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 L LDEIGD+ +Q +LLR +QE+EV +G + +VDVR++A+T++DL A++ G FR+ Sbjct: 250 LLLDEIGDMPLTLQTKLLRVLQEKEVTPLGQTKGRAVDVRVVASTNQDLEAKIAQGLFRE 309 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DL YRLNVV I +PSL +R EDIPLLA HFLQ++A K F P L+ W G Sbjct: 310 DLLYRLNVVTITIPSLAERPEDIPLLARHFLQKYAAEYNKGDLTFAPATEQELLRRRWKG 369 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE------------ 404 NIREL+N V+R V+L +G I+ +L AS P ++ + L Sbjct: 370 NIRELQNTVKRVVLLTSGPQITPADLAEGGASPEEPPTGAEPMPTLTRLPYNEAKREVLT 429 Query: 405 -VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +E + AA+ ++GGN T AA+ G+ R+ L Sbjct: 430 SFSREYLTAAMHQSGGNVTAAAQSSGLGRQAFQRLLR 466 >UniRef50_A1HNC6 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNC6_9FIRM Length = 465 Score = 592 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 176/453 (38%), Positives = 253/453 (55%), Gaps = 17/453 (3%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 T I +L+++D+ S ++L++ L GY + SG + L+ RE+ FD+ L D+R+ Sbjct: 5 TSAVIHVLIIEDEDSFRSLLESRLNRKGYCITATASGEEGLKAAREKSFDVALVDIRLPG 64 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 MDGI L+ ++ L VL+MT + ++ETA+EA++ GA YL KPLD L+ L KAL Sbjct: 65 MDGIQVLQALRQLQSPPEVLMMTGHGTIETAIEAMRQGAYHYLTKPLDLKELELVLAKAL 124 Query: 122 AHTHSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 D + +VG SPA+ ++ A + VLI G+SGTGKE Sbjct: 125 EKRRLADRVEGLNRALDRQTGEPEIVGNSPALLKVIDLTRKAASWDIPVLITGESGTGKE 184 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+A+A+H S R KP + +NC L +LLESELFGHEKGAF+GA R G A GT Sbjct: 185 LIAKALHHWSNRKGKPWIAINCGTLPSNLLESELFGHEKGAFSGAVASRVGLVEAAHEGT 244 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEIG++ +Q +LLR ++ E +R+G+N++ VR++AAT+++L + AG+FR+ Sbjct: 245 LFLDEIGELEVGLQAKLLRFLESGEYRRIGNNRLFKSKVRVVAATNKNLEEAIAAGQFRE 304 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRL+ + + +P LR+RR DIPLL +FL+R R P + L Y +PG Sbjct: 305 DLYYRLSGMVLRLPPLRERRGDIPLLVQYFLKR---RYPHRQPPIDPSVWERLEAYRFPG 361 Query: 357 NIRELENAVERAVVLLTGEYISEREL---------PLAIASTPIPLGQSQDIQPLVEVEK 407 N+REL + V+RA +L G +S PL EV + Sbjct: 362 NVRELAHMVDRACMLYDGGMLSWHHFVGFCDDGVDRSRSHKPADSAFVYPPGMPLEEVRR 421 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 ILA L GGNK AA +LGI +TL L Sbjct: 422 RHILATLAMVGGNKAVAAEKLGIGLRTLYRYLE 454 >UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC n=2 Tax=Planctomycetaceae RepID=Q7UNH5_RHOBA Length = 485 Score = 592 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 181/471 (38%), Positives = 259/471 (54%), Gaps = 32/471 (6%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 IL+VDDD T L L G+ LA + A +Q+++ F+LV+ D+R+ Sbjct: 2 MPAASILLVDDDHHLATSLGEWLAEEGFETHLAGTLEDARQQLKQHAFELVITDLRLGGE 61 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+ + ++K + PVL+MT Y++ TAVEA++ GA+D L KP+ D L +++A+ Sbjct: 62 DGMTLVSDVKKHHSDTPVLVMTGYATPNTAVEAVRAGAVDLLTKPVIDDELLLAIDRAMN 121 Query: 123 HTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 ++ M + I VA ++A++LI G++GTGK + Sbjct: 122 QRKIEAENETLRRQLDQRSGLENILSHDYRMMKIFDVIDSVADAKASILITGENGTGKSM 181 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 +ARAIH AR P + + C AL ++LLESELFGH GA+TGA+ R G+F ADGGTL Sbjct: 182 IARAIHNRCARRSGPFIEVACGALPDTLLESELFGHVAGAYTGANTDRRGKFELADGGTL 241 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEI +P MQV+LLR +QE + + +G + SVD R+I AT+ +L V G FRQD Sbjct: 242 FLDEIATATPAMQVKLLRVLQELQFEPLGGMETRSVDTRVILATNENLDQAVADGSFRQD 301 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYR+NVV I +PSLR+R DIPLL HFL+ AE + + GF +AM L Y WPGN Sbjct: 302 LYYRINVVNIVLPSLRERTGDIPLLVDHFLREAAETAGRDIDGFDREAMKCLQSYAWPGN 361 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIAST---------------------------P 390 +R+LEN VERAV+L T +++ +LP + T P Sbjct: 362 VRQLENVVERAVLLATDRVLTKDDLPPDVLGTSANQHASIGSVGHSPGVTASSGASSFNP 421 Query: 391 IPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L + L E+E+IL +L + N+ A +L I R TL K+ R Sbjct: 422 AVLDGCSLREALEGPEREIILHSLRRHNWNRAATADELEINRTTLYKKMKR 472 >UniRef50_B8FXS0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Firmicutes RepID=B8FXS0_DESHD Length = 463 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 176/458 (38%), Positives = 268/458 (58%), Gaps = 19/458 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M H IL++DD+ + I+ L+ GY V A + + L + + + D VL D+++ Sbjct: 1 MKHSQ-KILILDDEEALRAIIAQRLKRKGYEVLEAGTAGEGLAFLNDTLVDAVLLDIKLP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + DG+ L +IK + + V+++T ++E+A+EA+K GA DYL KP + L+ TL+KA Sbjct: 60 DGDGLLLLPKIKQMQTDLQVIMLTGNGTIESAIEAMKLGAYDYLTKPCNLSELEITLQKA 119 Query: 121 LAHTHSIDAETPAVT-----ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + T AS+ +V +S AM LL+ VA ++ +VLI G+SG GK Sbjct: 120 LEKRRLLLENTGLRQVVSRHASELKIVAESEAMTSLLNMTRKVAQTDTSVLIQGESGVGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL+A+AIH S+R +P + +N A+ E+L+ESELFGHEKGAFTGA ++ G AD G Sbjct: 180 ELIAQAIHFWSSRVNRPCIPVNAGAIPETLIESELFGHEKGAFTGAGTQKIGLVEMADNG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++ +QV+LLR ++ E +RVG ++ VDVR++AAT+RDL E+ GRFR Sbjct: 240 TLFLDEIGEMPLAIQVKLLRFLESGEFRRVGDTRLRQVDVRIVAATNRDLGQEIAQGRFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLN + + VP LR+RR DI L HFL+ + P+ + L++YD+P Sbjct: 300 EDLFYRLNGLTLLVPPLRERRGDILPLVHHFLKTQRKELPHERYSLAPETQEQLLNYDFP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-------------PL 402 GN REL + +ER +L I+ ++ ++ + + + L Sbjct: 360 GNTRELFHLIERGQILSADGIITPGDIWPEKSAPTLKSSSAFASEEEFLQIFQEHPYPSL 419 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +VEK IL+ L+K GNKT+ A LGI+ + L KL Sbjct: 420 DDVEKAYILSTLKKAKGNKTQTAHILGISVRNLYRKLQ 457 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 592 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 192/450 (42%), Positives = 277/450 (61%), Gaps = 19/450 (4%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 +LVVDDD + +A L G+ V +A+SG +AL ++ E ++ D++M ++DGIA Sbjct: 622 VLVVDDDPGTRKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIAL 681 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 ++ + AL P++PV+++TA+++VETAVEA++ GAL YL KPL FD L L A+AH + Sbjct: 682 MERVHALRPSLPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDELALVLRHAVAHERAR 741 Query: 128 DAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 A +VG +PAM+ + + + VAP++ATVL+ G++GTGKELVARAI Sbjct: 742 RDVLRLRGELERAAGFEEIVGTAPAMREVFAMVEQVAPADATVLLRGETGTGKELVARAI 801 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 H S R ++P V +NC A+ + L+ESE FGHEKGAFTGA RR GRF +ADG TLFLDE+ Sbjct: 802 HRRSPRRDRPFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLFLDEV 861 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 GD+ +Q +LLR +QE+E+ RVG+ + VDVR++AAT+RDL A V+ GRFR DL+YRL Sbjct: 862 GDLDLAIQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLFYRL 921 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 NV+ + +P LR+R +D+P L HFL+ FA+R + P + Y WPGN+REL Sbjct: 922 NVIPLRLPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDLLAAARAYPWPGNVRELR 981 Query: 363 NAVERAV---------VLLTGEYISERELPLAIASTPIPLGQS---QDIQPLVEVEKEVI 410 N ERAV + G ++ R P A A P+ + + E+E + Sbjct: 982 NLCERAVLMGWAAVAPIFGAGAGVTPR--PDAGAGVPVDTSLPLLEARQRLVERFEREYL 1039 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L++ G E AR GI + L K+ Sbjct: 1040 TRLLKERRGRIGEVARAAGIAERNLYEKMK 1069 >UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG59_DESAH Length = 465 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 176/459 (38%), Positives = 262/459 (57%), Gaps = 25/459 (5%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 I +VDD+ L+ L GY V L + DL+L D+R+ +M+G+ Sbjct: 4 IAIVDDEKVLVNSLRIGLTKKGYRVYPFYDANGFLSYLGANEPDLILLDLRLPDMNGLEV 63 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L++I+ +N IP +++TA+ V++AV+A+KTGA DYL KP D + L+ ++K L + Sbjct: 64 LRQIRLMNRQIPTVMITAHGDVQSAVQAMKTGAFDYLNKPFDMEELELIIKKVLGEAQLV 123 Query: 128 DAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEAT-VLIHGDSGTGKELVARA 181 S ++G SP M L + ++ + T VLI G+SGTGK+L+A+A Sbjct: 124 KEVEHHRQRSYKAVILENIIGDSPPMLELYKTVKKLSHVKTTTVLIRGESGTGKDLLAKA 183 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH + RS +P + +NCA+L E LLESELFGHEKGAFT A R+ G A+ GTLFLDE Sbjct: 184 IHNLNPRSGRPFIEINCASLPEHLLESELFGHEKGAFTDAKNRKTGLVEIANNGTLFLDE 243 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++S ++Q +LL+ I+ + +RVG +SV+V +I AT+R+L + FRQDL+YR Sbjct: 244 IGELSILLQAKLLKFIETKTFRRVGGTSEVSVNVFIITATNRNLEQAIREQTFRQDLFYR 303 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV + P LR R+EDI + ++L + + K + A + ++YDWPGN+REL Sbjct: 304 LNVVPLFSPPLRDRKEDILKITDYYLDHYCRKFGKDLLSMALDAQHIFLNYDWPGNVREL 363 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP-------------------L 402 +N +ER V+L G I+ R LP + + P L Sbjct: 364 KNLIERLVILSDGATITGRHLPDGMIQPIAASERENRFDPMHVFKQDFSRGEQIPMDEIL 423 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 VEK++I+ ALEK KT AA+ LGI+R +LL ++SR Sbjct: 424 TAVEKKMIVNALEKADNVKTRAAKALGISRYSLLRRISR 462 >UniRef50_Q7UE04 Cetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UE04_RHOBA Length = 481 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 173/469 (36%), Positives = 265/469 (56%), Gaps = 35/469 (7%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 +LVVDDD +Q L Y V A + + LE RE D VL D+++ + G+A Sbjct: 6 TLLVVDDDPLILQCMQLCLPAPDYRVVTAVTAAKGLELFRETDPDAVLLDIQLPDQSGLA 65 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 + E + ++ +PV++MT + + ETA+ A+ GA +Y+ KP + D + ++ AL + Sbjct: 66 LIHEFREMDRRVPVILMTGHGTAETAITAISGGAFEYITKPFEPDGILPLIDSALETSRM 125 Query: 127 IDAET-----------PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + + ++G PAM + I VA +A VLI G++GTGK Sbjct: 126 ARRPAELPTDSGQPLDRSKATAADLILGSCPAMVDVFRSIGRVASRDAAVLILGETGTGK 185 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E+VARAI+ S R ++ +NCAA+ E+LLESELFGHE+G+FTGAD+RR G+F +GG Sbjct: 186 EVVARAIYQHSQRHDQVFHAINCAAIPEALLESELFGHERGSFTGADQRRIGKFEICNGG 245 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIGD++P+MQ +LLR +QE+E +RVG ++ I DVR++AAT+RDL + + G FR Sbjct: 246 TLFLDEIGDMTPVMQTKLLRVLQEKEFERVGGSKPIKTDVRILAATNRDLESAMADGSFR 305 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 DL+YRLN IE+P LR+R ED+ +A HF FA++ K P+ M L+ + WP Sbjct: 306 SDLFYRLNEFTIELPPLRERGEDVARMAEHFFSLFADQLGKDFVSIAPETMQRLMAHSWP 365 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV------------ 403 GN+REL+ V++ ++ +G I LP + P + Sbjct: 366 GNVRELQGIVKQTLLKASGPVIVPAFLPSGFGESSSPGNNVEISNGWESEVSKEINRRLA 425 Query: 404 ------------EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 EV++ +I ++ TG N +EA+ +LGI+R TL +++ Sbjct: 426 SGSCTVSEDIHNEVDRILIREVMKATGNNLSEASLRLGISRPTLRSRMK 474 >UniRef50_C8X529 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrionales RepID=C8X529_DESRD Length = 464 Score = 591 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 171/444 (38%), Positives = 260/444 (58%), Gaps = 11/444 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +L+VDDD S +L+ L G+ A + QAL V+ DLVL DVR+ + +G+ Sbjct: 2 ATVLIVDDDASLRVVLEIALERRGHCPLTAENSEQALSAVQNNGVDLVLLDVRLGQENGV 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L+ ++ +PV+++TAY+ +AVEA+K GA DY+ KP D L +E++L + Sbjct: 62 DLLRLVRQNWADLPVIMITAYADSHSAVEAMKLGASDYIHKPFDVQELLLVVERSLKTSR 121 Query: 126 SIDAET---PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAI 182 + + ++G+SP MQ + + VAP+ +L+ G+SGTGKELVARAI Sbjct: 122 LQEENRWLKKEIQGRYGEIIGESPCMQEVFHLVERVAPTVINILVTGESGTGKELVARAI 181 Query: 183 HASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEI 242 HA S R + PL+ +NC L E+L+ESELFG+ +GAFTGADK ++G AD GT FLDE+ Sbjct: 182 HAQSPRRDNPLMVINCGGLPENLVESELFGYRRGAFTGADKPKKGLLELADSGTAFLDEV 241 Query: 243 GDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL 302 +++P QV+LLR +Q++ +G I+ DVR+IAAT+R + +V G FR DLYYRL Sbjct: 242 AELAPSTQVKLLRCVQDKSFIPLGGASEITTDVRIIAATNRQVDQDVAQGHFRDDLYYRL 301 Query: 303 NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELE 362 + + I +P LR R D+ LLA HFL R ++++ +P+A L Y +PGN+RELE Sbjct: 302 SGMIIHLPPLRDRGSDVLLLAEHFLGRACREQKRSLLRLSPEARRKLQRYHFPGNVRELE 361 Query: 363 NAVERAVVLLTGEYISERELPLAIASTPIPL--------GQSQDIQPLVEVEKEVILAAL 414 N +ERAV L G I+ L + G+ L E +++ AA+ Sbjct: 362 NIIERAVALEQGNTITPSSLIIYEQDAAADPSGVNRVLGGELSLEDHLQSEEHKILKAAM 421 Query: 415 EKTGGNKTEAARQLGITRKTLLAK 438 + TGG+K++AA+ +G+ + + Sbjct: 422 DATGGHKSQAAQLVGLNFRQFRYR 445 >UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7U7_9BACT Length = 462 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 196/460 (42%), Positives = 281/460 (61%), Gaps = 25/460 (5%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 D+ IL+VDD+ + + LR +NVA A G +A+E ++ + FDLVL D+RM + Sbjct: 2 KDSARILIVDDEHNTREAMARYLRLR-FNVATAADGGEAIELLKHEDFDLVLTDLRMPKA 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE---- 118 DG++ L+ + +++TAY S+ AV A+K GA D++ KP+ D L+A ++ Sbjct: 61 DGMSVLEATASKANRPACILLTAYGSIGDAVAAVKKGAFDFVAKPVKLDKLEAVIDAALA 120 Query: 119 --------KALAHTHSIDAETPAVTASQFGMV--GKSPA--MQHLLSEIALVAPSEATVL 166 KA ++ A PAV A G+V PA M ++S + VAP+ +TVL Sbjct: 121 ARRKAAEDKAAQAEATVAATAPAVAAPPPGIVLPTDDPANPMTKVMSLVKTVAPTRSTVL 180 Query: 167 IHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRRE 226 + G+SGTGKE+ AR IH S R V ++CAAL +LLESELFG+EKGAFTGA +R + Sbjct: 181 LTGESGTGKEVFARMIHDWSGR-TGYFVPVHCAALTATLLESELFGYEKGAFTGAAERHK 239 Query: 227 GRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLA 286 GRF AD GTLFLDEIG+I P QV+LLR ++ R +RVG + I VDVRL+AAT+RDL Sbjct: 240 GRFEVADHGTLFLDEIGEIDPATQVKLLRVLETRSFERVGGTETIKVDVRLVAATNRDLR 299 Query: 287 AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAM 346 V+ G FR+DL+YRL+VV +E+P LR R+ DIP L F+ FA N + V G P A+ Sbjct: 300 KMVSEGTFREDLFYRLSVVNLELPPLRDRKSDIPGLIHSFIAEFARENERDVTGIAPDAL 359 Query: 347 DLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPL-------GQSQDI 399 L+ Y WPGNIREL N +E VVL + + + ++P A+ + P+ +I Sbjct: 360 AELVAYPWPGNIRELRNCIECMVVLAREKILRKSDIPEAVRNHENPVPPGSAATAPEPEI 419 Query: 400 QPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 + E+++I AL + GN+T+AA+ LGI+R+TL +L Sbjct: 420 ETFENSERKLIEKALAECNGNRTQAAKLLGISRRTLHRRL 459 >UniRef50_Q3IBQ0 Transcriptional regulatory protein n=1 Tax=uncultured sulfate-reducing bacterium RepID=Q3IBQ0_9BACT Length = 458 Score = 591 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 184/451 (40%), Positives = 282/451 (62%), Gaps = 11/451 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ +L+V+D+ + LR G+ V +A+ G + + + D+++ D+ M Sbjct: 1 MSVCGRRLLIVEDEPLLRITMADALRKEGWTVDVADDGVKGAALFEQYLHDMIVSDLVMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE-- 118 +M G+ LK +KAL P V+I+TA+ +V AVEA++ GA D++ KP L L Sbjct: 61 QMGGMDLLKRVKALQPTTTVVIITAHGTVNRAVEAMREGAADFIAKPFSMAQLVVRLSNV 120 Query: 119 ---KALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + L + E S M+GKS AM+ + I LVA S+A+VL++G+SGTGK Sbjct: 121 CSTRLLREQNVRLQEQLEKRHSFANMIGKSKAMREVFDLIRLVADSDASVLVYGESGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 E+VA A+H +S R K V ++CA+L ESL+ESELFG+E+GAFTGA++RR GRF A GG Sbjct: 181 EMVAAAVHYNSQRRAKSYVRVSCASLPESLIESELFGYERGAFTGANERRIGRFEAASGG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++ QV+LLRA+QER+++R+GSN+ + V+VR+++A+ R L E++AGRFR Sbjct: 241 TLFLDEIGELPLGFQVKLLRALQERQIERLGSNRPVDVNVRIVSASLRPLEDEIDAGRFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL++R+N VAI +P LR+R ED+P+LA FLQ FAE + ++GF+ + +++ + W Sbjct: 301 EDLFFRINTVAICLPPLRKRLEDVPILAASFLQEFAEERKLEIEGFSDEVLEVFDAHPWT 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDI------QPLVEVEKEV 409 GN+REL N VERAV+ G + ++P+++ + + + E Sbjct: 361 GNVRELRNVVERAVLFCRGSKVEVDDIPVSMRGRSRETALEGRDKVMTMHEAVEKAEVRA 420 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 I AAL TGG + +AA LG++RKTL K+ Sbjct: 421 IRAALASTGGRRADAADLLGVSRKTLWEKIK 451 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 170/457 (37%), Positives = 262/457 (57%), Gaps = 20/457 (4%) Query: 5 NIDILVVDDDISHCTILQALLRGW-GYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 +L+ DD+ +L + V NS L + ++ F L++ D+++ + Sbjct: 11 TYRVLIADDEERMRRVLTMIFEEMKDVKVVAGNSFEDVLRYLDKERFHLLITDLKVPGSN 70 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 I ++ +K IP++++TAY SV A++ +K G DYL+ P D D L+ +++AL Sbjct: 71 SIDFIRAVKNKVADIPIIVLTAYGSVGFAIDIMKEGVFDYLVAPFDNDILELAVKRALKV 130 Query: 124 THSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + A + ++G SP++ L + V +++TVL+ G+SGTGKELV Sbjct: 131 SSLTIENKNLRKALELQYNFGNIIGNSPSVVETLRLVGEVTRTDSTVLVTGESGTGKELV 190 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 +RAIH +S R P V LNCAA+ E+LLESELFG+EKGAFTGA+K ++GRF A GGT F Sbjct: 191 SRAIHYNSDRKCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKTKKGRFELAAGGTFF 250 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEI ++S +Q ++LR I+ +E++R+G I VDVR+I AT+RDL V G+FR DL Sbjct: 251 LDEISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEGKFRDDL 310 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 YYR++V I +P+LR+R DI L+ HF+ F+ + K + + +LI + W GNI Sbjct: 311 YYRISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKTPIVLSSEVEKILIKHKWEGNI 370 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPL--------------GQSQDIQPLVE 404 REL+N +ERAV+L I LP +I P + L + Sbjct: 371 RELQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVNFDIPPNGLSLDD 430 Query: 405 VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +EK+++ ALE++ N T+AA+ LG+TR T +L + Sbjct: 431 LEKQLVAKALERSKNNITKAAKLLGLTRGTFRYRLQK 467 >UniRef50_C4XL32 NtrC family two-component response regulator n=4 Tax=Proteobacteria RepID=C4XL32_DESMR Length = 452 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 202/446 (45%), Positives = 275/446 (61%), Gaps = 7/446 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 +LVVDD+ L +L GY+VA A SG A+ + ++ FDLVL D+RM + Sbjct: 1 MKGASVLVVDDEAIAVENLSHILAREGYDVAAAASGEAAVGLLADREFDLVLTDLRMKGL 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DG+A L E K L P V++MT +++V +AVEA++ GA YL KP ++AT+ +A+ Sbjct: 61 DGLAVLGEAKRLWPDTEVVVMTGHATVFSAVEAMRLGACHYLTKPYGLAEVRATVAEAMD 120 Query: 123 HTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 ++G+SPA+Q L+ I +AP+++TVLI G++GTGKEL Sbjct: 121 KRRLRLEVARLSRQVAELGRGPLIIGESPAIQALIDNIRHIAPTDSTVLILGETGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VARAIHA+ + + +NC A E LL SELFGHEKGAF+GA ++G F A GTL Sbjct: 181 VARAIHAAGLQRANRFLAVNCGAFTEELLTSELFGHEKGAFSGAMSLKKGLFEVAGEGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG++SP MQVRLLR +QER RVG ++ I V R++AAT+RDL A+V G FR D Sbjct: 241 FLDEIGEMSPSMQVRLLRVLQERHFFRVGGDKEIPVVARILAATNRDLKADVERGLFRAD 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRLNV+ + VP L RR+DIPLLAG F R+A K V GF+ +A+ L+ Y++PGN Sbjct: 301 LYYRLNVITLRVPPLSARRQDIPLLAGAFAARYARGMDKPVTGFSAEAVRRLMAYEYPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLG--QSQDIQPLVEVEKEVILAALE 415 IRELEN V+RAV++ GE I +LP + L + ++ L E+E+ I L Sbjct: 361 IRELENIVQRAVIMARGEVIEAGDLPQDLHGDAPALARREGPELIALEELERRHIRDILT 420 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 GNKT AA LGI R +L K+ R Sbjct: 421 YCDGNKTRAAEILGIDRVSLWRKVKR 446 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 191/476 (40%), Positives = 281/476 (59%), Gaps = 42/476 (8%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVF-DLVLCDVRMAEMDGI 65 +LVVDDD + ++QA+L G+ VA A SG QA+ ++ D+VL D+ M + G Sbjct: 4 TVLVVDDDPTQRRLIQAVLEREGFAVAHAESGDQAISRLASGAAADVVLLDLVMPGISGQ 63 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 TL E++A + PV+++TA ++T V+A++ GA+D+ +KP + + ++ AL+ Sbjct: 64 DTLVEMRARGFSQPVIVVTATGGIDTVVQAMQAGAVDFFVKPAAPERIIVSIRNALSMGA 123 Query: 126 SIDAETPAVTAS-----QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + ++G SPAM + A S +LI G+SG GKE++AR Sbjct: 124 LKGEVDRLKKHASGRTTFDDLIGASPAMVMVKRLGERAARSSIPILITGESGVGKEVIAR 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 A+H SS R+ KP V +NC A+ E+L+ES LFGHEKG+FTGA + G+F EA+GGTLFLD Sbjct: 184 AVHGSSDRAGKPFVAVNCGAIPENLVESILFGHEKGSFTGATDKHLGKFQEANGGTLFLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+G++ MQV+LLRA+QE E+ +GS + + VDVR+++AT+RDL+ V GRFR+DLYY Sbjct: 244 EVGELPLDMQVKLLRALQESEIDPIGSKRSVKVDVRIVSATNRDLSQAVAEGRFREDLYY 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV IE PSLR+R+EDIP L F++RF KAV G P+ + L +DWPGN+R+ Sbjct: 304 RLNVFPIEAPSLRERKEDIPALVDAFIRRFNVEEGKAVVGAAPETLACLTGFDWPGNVRQ 363 Query: 361 LENAVERAVVLLTGEYISERELPL----------------AIASTPIPLGQSQDI----- 399 LENAV RA+VL Y+ + P AS P P+ + ++ Sbjct: 364 LENAVYRAIVLADAPYLQPHDFPAISGIAAPPPEALAPKAVTASAPGPVPSAGELAAELP 423 Query: 400 ---------------QPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +PL E+E+++I A+E G+ +E AR+LGI R TL K+ Sbjct: 424 QPQAPVPILDARGHIRPLDEIERDLIQHAIEVYSGHMSEVARRLGIGRSTLYRKVR 479 >UniRef50_Q7UVW6 Acetoacetate metabolism regulatory protein n=3 Tax=Planctomycetaceae RepID=Q7UVW6_RHOBA Length = 485 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 175/447 (39%), Positives = 265/447 (59%), Gaps = 8/447 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA-E 61 + +L+VDD+ + + L L ++ A S +AL++ F LV+ DV+M + Sbjct: 35 DSELHLLIVDDEPNIRSGLARGLEKICDHIETAGSVNEALDKFDAGHFQLVIADVQMPGD 94 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 DG+ + I+ +P +++TA +VETAV+A+K GA D+++KP+D + ++ + KA Sbjct: 95 RDGLELISLIRQRDPGTTCIVITANGTVETAVDAMKRGAFDFIMKPVDLNLIRQQVAKAA 154 Query: 122 AHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 H + G +G Q+L+ +I VA ++ATVL+ G+SGTGKE Sbjct: 155 EHHQLRNENHHLREQLAEAGELTGFIGNCQTFQNLVDKIRQVAATDATVLVQGESGTGKE 214 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 L+ARA+H S R+ P V +N AL ESLLESELFGHEKG+FTGA +++ G F +A GGT Sbjct: 215 LIARAVHDLSNRNNAPFVAVNLGALPESLLESELFGHEKGSFTGASRQKPGCFEQASGGT 274 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEI +I QV LLR ++ + RVG +++ + R+++AT++ + V G FR+ Sbjct: 275 LFLDEITEIPAKSQVDLLRVLETGQYARVGGEELLQSNARIVSATNQVASKLVEDGAFRE 334 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRLN++ IEVP LR RREDIPLL HFL+RF R+R+ +K P+AM +L WPG Sbjct: 335 DLYYRLNIIPIEVPPLRNRREDIPLLVEHFLKRFCARHRRPLKRIVPEAMQMLSQSHWPG 394 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQS--QDIQPLVEVEKEVILAAL 414 N+R+L N +ER VV + E I +LP + + ++ EK I AL Sbjct: 395 NVRQLRNHIERLVVTVPAETILAADLPCELHQQNAAQSTALKTLVEITESAEKTGIELAL 454 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 ++ + A+ LGI+ +TL K++R Sbjct: 455 SAKKSHREQTAKALGISVRTLHYKMNR 481 >UniRef50_B9XIA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XIA4_9BACT Length = 435 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 169/436 (38%), Positives = 262/436 (60%), Gaps = 8/436 (1%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +ILV+DDD +L +L+ Y V+ G E + ++VL D ++ + G Sbjct: 2 RANILVIDDDAEIRELLVQILQRSSYQVSQVKDGAGLKEAINRLQPEIVLLDFKLPDATG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L IK P V+++T +++ + AVEA+K GA + KP D ++L +++AL Sbjct: 62 LDLLPFIKKEWPESEVIMLTGHATYDVAVEAIKRGAFHFQEKPFDPESLLNLIKRALEIR 121 Query: 125 HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 +A S + + M++++ + VAPS+ ++LI G+SGTGKE++A IH+ Sbjct: 122 SLREAV------STGNAIFQCDVMKNVVRTVRRVAPSDVSILITGESGTGKEVIADLIHS 175 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 SS R+ PL+ +NCAAL L+ESELFG KGAFTGA REG F +A+GGTL LDE+ + Sbjct: 176 SSHRASGPLIKINCAALPRELIESELFGSVKGAFTGAHSDREGLFRQAEGGTLLLDELSE 235 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + Q +LLR +QE+EV+ VG D R+IAAT+R + G+ R+DL+YR++ Sbjct: 236 MPIDTQSKLLRVLQEKEVRPVGGRTSYKTDCRIIAATNRKPEEAIRDGKMREDLFYRISA 295 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 V++ +P LR+RREDI LA FL+RF+ + + + GFTP+A + L +DWPGN+R+L+N Sbjct: 296 VSVHLPPLRERREDILPLATAFLKRFSAQANRDIAGFTPEAAERLRSFDWPGNVRQLQNE 355 Query: 365 VERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEA 424 V+RAV+L G+ + +L +I + L VE+ I+ L++TGGNK E Sbjct: 356 VQRAVLLCEGKLVDAPDL--SITAPANESTGDTSYTLLEGVERNTIVQMLKETGGNKLET 413 Query: 425 ARQLGITRKTLLAKLS 440 A++LGI R+TL K+ Sbjct: 414 AKRLGIGRQTLYNKIK 429 >UniRef50_B4CU93 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU93_9BACT Length = 465 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 185/452 (40%), Positives = 261/452 (57%), Gaps = 16/452 (3%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 I+VVDD+ L+ALL GY LA++ L VR+ DLVL D+ + + DG Sbjct: 7 RYKIVVVDDERPVLLTLEALLTRHGYEPQLAHTATAGLAIVRKSKPDLVLLDLGLPDADG 66 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + LKE+KA P +PV+I+TA S+ AVE++K GA ++ KP + L + + +A+ Sbjct: 67 LDVLKELKAELPQLPVIILTANDSLSNAVESIKQGAFHFISKPYAVEELLSLITRAIEQR 126 Query: 125 HSIDAETPAVTASQF------------GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 Q V +S +M+++ + AP++A VL+ G+SG Sbjct: 127 QLQREAETLREEKQELSRRLAHAERQLAPVAQSRSMRNVRDLVERFAPTDANVLLLGESG 186 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 GKE+VA +H S R++ P+V LNCAA +++E ELFG+ KGAFTGA G +A Sbjct: 187 VGKEVVANQVHRLSRRADGPMVKLNCAAFPANMIEGELFGYVKGAFTGAVADFPGMIAQA 246 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 GGTLFLDEI ++ +Q R LR +QERE +R+GS + I + RL+AAT+R+ A V G Sbjct: 247 TGGTLFLDEIAEMPVELQTRFLRVLQEREFRRLGSTKTIPANFRLVAATNRNAAEAVRNG 306 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 RQDLYYRLN IE+P+LR+RREDIP L FL RFA++ K P+A D L++Y Sbjct: 307 TLRQDLYYRLNTFQIEIPALRERREDIPALVAVFLARFAKQMGKPEPTIAPEAFDRLLNY 366 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPI----PLGQSQDIQPLVEVEKE 408 DWPGN+REL+NA+E +VVL I+ +ELP I + L + E++ Sbjct: 367 DWPGNVRELQNAIEYSVVLADQALITVKELPREIQLPAALHEARAANAAASLNLEDQERQ 426 Query: 409 VILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 IL AL + GNK +AA LGI R TL K+ Sbjct: 427 AILQALTQAHGNKKKAAAILGIHRPTLYNKMK 458 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 190/459 (41%), Positives = 279/459 (60%), Gaps = 20/459 (4%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALAN----SGRQALEQVREQVFDLVLCDV 57 + + +L+VD+D +H + L GY+ +A+ SG++AL+ + + FD+++ ++ Sbjct: 11 SEVRVRVLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKALDLIEVENFDVIITEL 70 Query: 58 RMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATL 117 M E+DG+ L+ KA P V+++T ++S+++A+ A + GA YL KPLD L+ + Sbjct: 71 MMDEVDGLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAV 130 Query: 118 EKALAHTHSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 ++A + + G++G SP+M L+ ++ VAP+++TVLI G+SG Sbjct: 131 DRASSRIRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVAPTDSTVLIQGESG 190 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKELVARAIH +S R KP V LN +AL ES+LESELFGHE GAFTGA +R G+F A Sbjct: 191 TGKELVARAIHQNSERKNKPFVPLNISALPESILESELFGHEAGAFTGAATKRIGKFEYA 250 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 +GGTLFLDE+G++ Q++LLR ++ER + R+G+N I ++VRL+AAT+ DL + G Sbjct: 251 NGGTLFLDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDMIKKG 310 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR+DLY+RL+VV I +P L RR DIP L HFL++FAER ++ + T Q L+ Y Sbjct: 311 TFRKDLYFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRPIPTVTRQVQQALMAY 370 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ-----------P 401 WPGNIREL N VE +VL + +LP I + + IQ Sbjct: 371 AWPGNIRELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHHEHSEVDLIQNPAGNDGLIGRS 430 Query: 402 LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L +VEK I ALE TGG + EAA LGI +TL K+ Sbjct: 431 LNDVEKYYIARALELTGGKRDEAANLLGIGERTLYRKIR 469 >UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XQY9_9BACT Length = 502 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 190/495 (38%), Positives = 281/495 (56%), Gaps = 62/495 (12%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE--MD 63 +L+VDD+++ ++ +LR G+ V + + A+ + ++V+ D+ + + Sbjct: 2 AKVLLVDDELTMVQMVTEMLRAEGHEVFPYTNFKDAVAALEIHTPEIVVTDLYLDKTRAH 61 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ L++ +++ P V+++TA+ S+ETAVEA+K GA DYL KP D L +++AL++ Sbjct: 62 GLEILQKARSITPPASVIVITAFGSIETAVEAMKNGAYDYLEKPFKLDELNLCIQRALSY 121 Query: 124 THSIDAETPAVTAS-----QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 +I ++G + MQ + I A +++T+LI G+SGTGKELV Sbjct: 122 NEAISENLYLKKQLKKKYQFSQIIGTAGPMQEVFKMIERTADTDSTILILGESGTGKELV 181 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARA+H +S R P + +NC+AL E+LLESELFGH KG+FTGA ++G F EADGGT+F Sbjct: 182 ARALHFNSKRQFAPFIPVNCSALPENLLESELFGHRKGSFTGALTDKKGLFQEADGGTIF 241 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG +S +Q RLLR +QEREV+RVG N ++VR++AAT+ L ++ G FR+DL Sbjct: 242 LDEIGSMSSTLQSRLLRVLQEREVRRVGENVPTYINVRVVAATNEPLEKKIKDGTFREDL 301 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQ-RFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 YYRLNV++I++PSLR+RR+DIPLLA HFL+ + R+ ++V+ T QA+DLL YDWPGN Sbjct: 302 YYRLNVISIQMPSLRERRDDIPLLAAHFLRNKINPRSGQSVQ-ITRQALDLLTTYDWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAI------------------ASTPIPLGQSQDI 399 +RELENA+ERA L I R+LP ++ A P P + Sbjct: 361 VRELENAIERAATLCEDNLIQIRDLPPSLVRSLGQPPSASTALSADVAQLPQPTTPPTSL 420 Query: 400 QP-----------------------------------LVEVEKEVILAALEKTGGNKTEA 424 P L E E + L GG+K + Sbjct: 421 VPIQTAIPGASAPLSVPNGTNPGATPTLHADLSLKDYLREQELAYLNRTLALFGGDKEKT 480 Query: 425 ARQLGITRKTLLAKL 439 A LGI+ TL KL Sbjct: 481 ALHLGISLATLYRKL 495 >UniRef50_Q2LXW1 Sigma-54 dependent transcription regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW1_SYNAS Length = 450 Score = 589 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 173/443 (39%), Positives = 258/443 (58%), Gaps = 4/443 (0%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 IL++DDD S +L G GY V + + LE D+++ D+R+ +M Sbjct: 1 MCKKKILIIDDDASQLELLNIFFSGRGYAVHCSATAMAGLEARATFHPDVIVLDIRLPDM 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DGI L+ + +I V+++TAY +ET V+A+K GA +Y+ KP+D D L+ + +AL Sbjct: 61 DGIEVLRSLDTGKSSINVIMITAYHDMETTVKAMKLGAYEYITKPIDVDELEDAVCRALK 120 Query: 123 HTHSIDAETPAVTASQFG---MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 ++ +A+ + M+G S M+ + I +++ + TVLI G++GTGKEL+A Sbjct: 121 NSELREAKELPAVKTFLQKGPMIGNSKPMKEVFKMIGVLSENNVTVLIEGETGTGKELIA 180 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RAIH + P + +NC+A+ +LLESELFGHEKGAFTGA ++G+F A GT+FL Sbjct: 181 RAIHDYGPHKDHPFIPINCSAIVGTLLESELFGHEKGAFTGAFATKKGKFELAGEGTIFL 240 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DE+G+I +Q +LLR +Q++ QRVG + + R+I AT++DL V AG FR+DLY Sbjct: 241 DEMGEIPIELQAKLLRFLQDKAFQRVGGEKFLHSKARVIVATNKDLLQMVRAGTFREDLY 300 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL+ I VP LR+RREDIP L H ++ K + +A+ ++ YDWPGN+R Sbjct: 301 YRLSAAKINVPPLRKRREDIPFLLDHMVKEINAELGKRIDRVDKKALLRMMEYDWPGNVR 360 Query: 360 ELENAVERAVVLLTGEYISERE-LPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTG 418 EL N + A + GE + + LP A T + L EVE+E IL L T Sbjct: 361 ELRNVLTGAAISTRGETLLDDAILPFLGAGTVQDIFPPGAALSLREVEREHILKILHYTN 420 Query: 419 GNKTEAARQLGITRKTLLAKLSR 441 GN T +A+ LGI+R TL K+ + Sbjct: 421 GNITSSAQILGISRPTLRQKIRQ 443 >UniRef50_Q3A2K8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=Q3A2K8_PELCD Length = 451 Score = 589 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 186/446 (41%), Positives = 270/446 (60%), Gaps = 6/446 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M ILVVDD+ +L+ +L+ Y V+ A +G++AL ++ +++FD+VLCDV M Sbjct: 1 MGDKVKKILVVDDESCMRHMLRLVLQRAEYVVSEAANGQEALIRLEKEMFDVVLCDVCMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +DG LKE++A N + V++M+AY +++TAVE LK GA DY+ KP D + TL KA Sbjct: 61 TLDGPGFLKELRARNVSPTVIMMSAYGNLDTAVECLKEGAFDYISKPFKPDEVVLTLRKA 120 Query: 121 LAHTHSIDAETPAVT-----ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 + A MV M+ ++ + A + VL+ G++GTGK Sbjct: 121 EERLRLREENGLLRQELNRTAQSGQMVYACSGMEQAMTLVGRAAQVNSPVLVTGETGTGK 180 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELVARA+H R KP + +NC +N +++SELFGH +GAFTGA++ +G FV A+GG Sbjct: 181 ELVARALHQQGKRRGKPFIAINCGGMNAGVIDSELFGHIRGAFTGANRGHDGLFVAAEGG 240 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDEIG++ +Q RLLRA+QE+EV+ VG+ DVR++AAT R+L E+NAGRFR Sbjct: 241 TLFLDEIGELPMTLQPRLLRALQEQEVRPVGAVNPRPTDVRIVAATARNLQEEINAGRFR 300 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 DL++RL V+ I +P LR+R+ DI LLA HFL R A R ++ TP+A++ L Y WP Sbjct: 301 SDLFFRLAVIEIHLPPLRERKGDIALLAEHFLSRLALREGRSCPSLTPEAVESLERYAWP 360 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLG-QSQDIQPLVEVEKEVILAAL 414 GN+REL N +E+ + + I LP I P G + + +E E I AL Sbjct: 361 GNVRELANFMEKTAIFCRDDKICMEHLPWEIRRHPRDRGQDMSLKKAVSRIEPEYIRRAL 420 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLS 440 TGGN+T+AA+ L I+ + L K+ Sbjct: 421 SVTGGNRTKAAQLLDISLRNLHYKIR 446 >UniRef50_C0QK65 Two-component sensory box histidine kinase/response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QK65_DESAH Length = 445 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 187/446 (41%), Positives = 266/446 (59%), Gaps = 13/446 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL+VDD+ +L ++ + V A G +ALE V +D+V+ D++M +DG Sbjct: 2 ARILIVDDEEKIRYLLSIMIGRRAHLVDQAKDGAEALEMVSSTPYDMVITDMKMPRLDGT 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 LK+I L+ PV+ +TA+++VE+AVEA++ GA DYL KP + +++ T+E+ L + Sbjct: 62 GLLKQIMLLDIPCPVVFITAFATVESAVEAMRMGAADYLTKPFEEESVLLTVERTLKLSR 121 Query: 126 SIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + G M+ +S M ++ A V S++ +LI G+SGTGKEL+A+ Sbjct: 122 IMAENRDLKKQLDNGACASKMIFESKVMSDIIDLAAKVGKSDSAILISGESGTGKELLAK 181 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH S RS K V LNCAA++ +L+ESELFG+EKGAFTGA+KR G+F A GGTLFLD Sbjct: 182 YIHGQSLRSHKRFVPLNCAAISPNLVESELFGYEKGAFTGANKRSIGKFEYASGGTLFLD 241 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ Q +LLRA+QE+++QRVG N I VDVR++ ATH+DL V RFR+DLYY Sbjct: 242 EIGDLPLDAQAKLLRALQEKKIQRVGGNAEIPVDVRIVCATHQDLDGLVEKNRFRRDLYY 301 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 R+NV + P LR+R+EDIP LA HFL+ E T A LL Y WPGN+RE Sbjct: 302 RINVFPLSPPPLRERKEDIPALAVHFLK---ESFNGNDVVLTDGAKRLLAQYPWPGNVRE 358 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQP-----LVEVEKEVILAALE 415 L NA+ERAV+L I+ + L + + P L +E +++ AL+ Sbjct: 359 LANAIERAVILEENNAITAQTLSFLKKAHGPGENEGDYKLPPDGVCLQTLETDIVRQALD 418 Query: 416 KTGGNKTEAARQLGITRKTLLAKLSR 441 G N+T AA+ LG+TR + R Sbjct: 419 MAGQNQTVAAKMLGLTRAKFRVLMKR 444 >UniRef50_A3ZNW8 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZNW8_9PLAN Length = 466 Score = 589 bits (1519), Expect = e-167, Method: Composition-based stats. Identities = 198/443 (44%), Positives = 279/443 (62%), Gaps = 6/443 (1%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 ++LVVDD+ + +L G+ A +S +AL+++ +D V+ D++M MD Sbjct: 9 ATGNVLVVDDNARARQSIVDVLEMLGHRGAACSSAHEALKRMETIDYDAVVTDLQMPGMD 68 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ +++I+ + IP++++TA+ SV TAVEA++ GA DYL KPL+ D L+A + + L Sbjct: 69 GLELVRQIRRRDAHIPIVMVTAHGSVSTAVEAMRFGAADYLEKPLNADRLEAVVNRVLES 128 Query: 124 THSIDAETPAVTAS--QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 S D T A Q M+G+S AMQ + +IA VAP++ TVLI G+SG GKEL+AR Sbjct: 129 AASGDRATVATPGETNQVAMIGESRAMQQVRQQIAQVAPTDETVLIIGESGVGKELIART 188 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH SS R+ + L++LNC L+ L+ESELFGH +GAFT AD R GRF A+ GT+ LDE Sbjct: 189 IHESSRRAGRALISLNCPVLSAHLMESELFGHTRGAFTSADSARVGRFELAEQGTILLDE 248 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 I +I +Q +LLR +QER +RVGS++ + DVR++A ++RDL EV AGRFR+DLYYR Sbjct: 249 ISEIDLSLQAKLLRVLQERCYERVGSSETLETDVRVLATSNRDLPGEVTAGRFRRDLYYR 308 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L VV IE+P LRQRR+DIPLL +FLQ+ A R K V +A+DLL+ +DWPGN+REL Sbjct: 309 LAVVPIELPPLRQRRDDIPLLVDYFLQQTAARLEKPVFDMRAEALDLLMRHDWPGNVREL 368 Query: 362 ENAVERAVVLLTGEYISERE----LPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKT 417 EN V RA VL IS + L + L E+E+ +I A LE Sbjct: 369 ENIVTRACVLAIDGQISADDFSSWLSCEAREETGDSQDAPVGVKLDEMERRLISATLEHY 428 Query: 418 GGNKTEAARQLGITRKTLLAKLS 440 G++ + A LGI+ +TL KL Sbjct: 429 DGHREKTAAALGISPRTLSNKLR 451 >UniRef50_B3QW87 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW87_CHLT3 Length = 497 Score = 589 bits (1519), Expect = e-167, Method: Composition-based stats. Identities = 177/482 (36%), Positives = 275/482 (57%), Gaps = 48/482 (9%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIA 66 ILVVDD+ ++ L GY V +A +G + Q ++ D+++ D + +++GI Sbjct: 3 TILVVDDEPVVTDYIKEALSEEGYAVEVAYTGNDGIVQAKKVSPDVIILDFMLPDLNGIE 62 Query: 67 TLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126 LK+++ L+ ++ V+++TAY+SV TA+EA++ GA DY++KP D D + T+ K H Sbjct: 63 VLKKLRQLDESLQVIMLTAYNSVPTALEAVRNGAADYILKPFDLDAFKITVAKICEKAHL 122 Query: 127 IDAETPAVTASQFGMVGK------SPAMQHLLSEIALVAPS-EATVLIHGDSGTGKELVA 179 + + + G S M + + VA + + TVLI G+SG GKE +A Sbjct: 123 TNQLRFLREDNAKKLAGNEFLLCPSVQMAKVYDLVFQVAQTNDTTVLILGESGAGKEHIA 182 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 + IH +S+R+ KP V +NCAA+ E+LLESELFGHE GAFT A ++ G F ADGGT+FL Sbjct: 183 KLIHQNSSRAAKPFVEMNCAAIPENLLESELFGHEPGAFTDARSKKLGLFEYADGGTIFL 242 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIGD+ Q ++L+ ++ +E +RVG + I DVR++AAT++DL+ E++ G FR+DLY Sbjct: 243 DEIGDMPLATQAKILKVLETKEFRRVGGLRDIKSDVRVVAATNKDLSFEIDRGNFREDLY 302 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL VV I++P LR+R+EDI LA FL+ RK ++ + A L+ Y W GN+R Sbjct: 303 YRLQVVPIDIPPLRERKEDILHLANFFLEMTGRSMRKRLE-LSGDAASALLSYTWKGNVR 361 Query: 360 ELENAVERAVVLLT-GEYISEREL---PLAIASTPIPLGQSQDIQP-------------- 401 EL+N +ERAV++ G I L P+++A + +P Sbjct: 362 ELKNVIERAVIVTPNGSRILPEHLAFKPMSVAELAKKSEEFLIPKPDYEARQAEQQRQAE 421 Query: 402 ----------------------LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKL 439 L ++E++ +L ALEKTGGN+ +AA+ LGI R L ++ Sbjct: 422 QRSNGLSFSLSKFYDGFSLKAHLEQIERQYLLDALEKTGGNQLQAAKLLGIERHVLRYQM 481 Query: 440 SR 441 + Sbjct: 482 KK 483 >UniRef50_B6BW54 Nitrogen regulation protein n=2 Tax=Betaproteobacteria RepID=B6BW54_9PROT Length = 465 Score = 589 bits (1519), Expect = e-167, Method: Composition-based stats. Identities = 172/461 (37%), Positives = 260/461 (56%), Gaps = 25/461 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M I ++DDD S +LQ L Y V + +A+ Q + DL++ D++M Sbjct: 1 MNSSKKKIWILDDDKSIRWVLQKALEKNNYTVLAFGNTNEAINQFNHDMPDLIVSDIKMP 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 G+ L+++K P IPV+IMTA+S +++AV++ GA +YL KP D DN + A Sbjct: 61 GESGLQFLEKVKGKFPNIPVIIMTAFSDLDSAVDSYSHGAYEYLPKPFDIDNAINVINSA 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 +A+ S ++G S AMQ + +I ++ S+A++LI G+SGTGKELVA+ Sbjct: 121 FKD----EADELNDIDSTNKIIGTSKAMQEVFKQIGKLSKSDASILITGESGTGKELVAK 176 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +S R +KP V LN AA+ + LLESELFG+EKGAFTGA+ ++G F EA GTLFLD Sbjct: 177 AIHDNSLRKDKPFVALNSAAIPKDLLESELFGYEKGAFTGANSSKKGYFEEAQDGTLFLD 236 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EI D+ +Q +LLR + + Q++GS+ +I +V++IAATH+DL ++N FR+DL++ Sbjct: 237 EIADMPIDLQSKLLRVLNDGSFQKLGSSSVIKANVKIIAATHQDLQDKINNQTFREDLFH 296 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ I++P LR+R DI LLA FL + A+ ++K + D +W GNIR+ Sbjct: 297 RLNVITIQLPPLRERENDITLLAKFFLNQSAQDLNTSIKYLNEETQDYFKKLNWTGNIRQ 356 Query: 361 LENAVERAVVLLTGEYISERELPLAIAST---PIPLGQSQDIQPL--------------- 402 L N V+ G+ I +LP + P +D L Sbjct: 357 LRNICHWLTVMSPGKEIGVSDLPTELLKENIYNKPSFNWEDNLELVIQNDILNNETNIYD 416 Query: 403 ---VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 ++E +I +AL+ G + +AA LGI R T+ K+ Sbjct: 417 TYIEKLESILIKSALKHCSGKRIKAAHILGIGRNTITRKIK 457 >UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2X1_9BACT Length = 519 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 177/403 (43%), Positives = 250/403 (62%), Gaps = 7/403 (1%) Query: 1 MTHDNID-ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV-FDLVLCDVR 58 M ILV+DDD L +L Y V A SG + + V++ D+V DVR Sbjct: 1 MPDSKPPVILVIDDDAEVRYSLSRVLSSKSYQVVEAASGEEGVGLVKKGPAPDVVFLDVR 60 Query: 59 MAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLE 118 M M G+ L+ I+++NP V++MTA+ + +TA+EA+K GA DY++KP D + A E Sbjct: 61 MGGMSGLEALQHIRSVNPRQLVILMTAFGTAQTAIEAMKFGAFDYIMKPFDPAKVLALAE 120 Query: 119 KALAHTHSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGT 173 AL H + A + G+VG SP MQ + + V S+ TV+I G+SGT Sbjct: 121 NALKAHHDMRAAGEYKPTINVDDYREGIVGASPVMQDVFKIVGQVTASDVTVMITGESGT 180 Query: 174 GKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD 233 GKELVAR+I S R+ K + +NCAA+ ++L+ESELFGHEKG+FTGA +R G+F D Sbjct: 181 GKELVARSIWKHSHRAAKSFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRIGKFELCD 240 Query: 234 GGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGR 293 GT+FLDEIGD++ Q ++LR +Q+ E+QRVG I VDVR+IAAT++DL A V A Sbjct: 241 RGTIFLDEIGDMALATQTKILRVLQQGEIQRVGGTDTIKVDVRIIAATNKDLEAMVKAKT 300 Query: 294 FRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYD 353 FR+DLYYRLNVV I++P LR+R DIP + LQ ++ + V +P+AM++L +D Sbjct: 301 FREDLYYRLNVVRIKMPPLRERTGDIPQIVDFCLQNLVKQKKARVGKVSPEAMNILARHD 360 Query: 354 WPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQS 396 WPGN+RELEN V R+ V+ G+ I ++LP+ I PL + Sbjct: 361 WPGNVRELENVVYRSAVIAQGDMILPKDLPVEIRDAVPPLATA 403 Score = 51.0 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 22/39 (56%) Query: 402 LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L +E+E+I T GN ++A LGITR TL +L Sbjct: 477 LKRLEREMIARVYRATDGNIAKSADLLGITRPTLKKRLE 515 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 182/464 (39%), Positives = 268/464 (57%), Gaps = 24/464 (5%) Query: 1 MTHDNI--DILVVDDDISHCTILQALLR-GWGYNVALANSGRQALEQVREQVFDLVLCDV 57 M +LVV+D T LQ LL+ V A G L +R + + LV+ D+ Sbjct: 1 MPAPAPVQRVLVVEDLEDTRTSLQELLQMSLKLEVDTAEDGAAGLAMLRAKPYSLVITDL 60 Query: 58 RMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATL 117 RM + G+ ++ I+A + V++ T +++ AVEA++ G D+L KP D +LQ + Sbjct: 61 RMPRVGGMKLIETIQAEKIPVTVIVTTGNGNIKDAVEAMRMGVYDFLTKPPDPQHLQIIV 120 Query: 118 EKALAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 ++AL D + ++ +SP M L I VA + +TVLI G++G Sbjct: 121 QRALRDRALQDEVAALRRELGERHTFQNVLSRSPKMVDLFELIGHVAGTASTVLIRGETG 180 Query: 173 TGKELVARAIHASSAR-SEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE 231 TGKE +ARAIH +SA V +NC ALNE+LLESELFGHEKG++TGAD++R GRF Sbjct: 181 TGKEQIARAIHQASANYRTGEFVAVNCGALNENLLESELFGHEKGSYTGADRKRIGRFEL 240 Query: 232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNA 291 A GTLFLDEIGD+ MQV+LLR +QER +RVG + I +DVR++AATH+D+ V Sbjct: 241 AHKGTLFLDEIGDVPMSMQVKLLRVLQERRFERVGGAEPIEIDVRVVAATHQDMEKLVKD 300 Query: 292 GRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 G+FR+DLYYRLNVV I++P LR+R EDIP+L HF Q+F R + +P+A+DLL Sbjct: 301 GKFREDLYYRLNVVRIDIPPLRERTEDIPVLVSHFCQKF-VRVGQKPPTISPEALDLLTK 359 Query: 352 YDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLV-------- 403 WPGN+R+LENA+ERA V I ++LP + P + + Sbjct: 360 CPWPGNVRQLENAIERACVTARDGVIRTKDLPPEVGRRPESSAAGKHPFHVDLNRKLPDQ 419 Query: 404 ------EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E+ I AL+++ G+ + A+ G++R+++ K+++ Sbjct: 420 LSELTAAFEERYIRRALKRSRGHVGKCAKITGLSRRSITDKIAQ 463 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 191/480 (39%), Positives = 268/480 (55%), Gaps = 40/480 (8%) Query: 1 MT-HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRM 59 MT H + ILVVDD+ + + + + + A+SG +ALE +R+ +++ D RM Sbjct: 1 MTQHADYPILVVDDEQDNLDAFRFNFKRA-FRLLCASSGEEALEILRDNEVAVIVTDQRM 59 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTG-ALDYLIKPLDFDNLQATLE 118 M G+ L + + P +I+TAY+ ++ V+A+ G Y+ KP + L+ L Sbjct: 60 PRMTGLELLLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYRYVTKPWEAKELRGILT 119 Query: 119 KALAHTHSIDAETPAVTA----------------SQFGMVGKSPAMQHLLSEIALVAPSE 162 AL + + ++G S A+ +LS++ VAP+ Sbjct: 120 HALERYALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVLSKVEQVAPTN 179 Query: 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGAD 222 +TVL+ G++GTGKELVA AIH +S+R +P V +NCAAL +LESELFGHEKGAFTGA Sbjct: 180 STVLLRGETGTGKELVAHAIHINSSRENQPFVRVNCAALAPGVLESELFGHEKGAFTGAV 239 Query: 223 KRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATH 282 +R GRF ADGGTLFLDE GD+ +Q++LLRA+QERE +RVG Q I VDVR+I+AT+ Sbjct: 240 AQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRVISATN 299 Query: 283 RDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFT 342 RDL A + AG FR+DLYYRLNV I +P LR R ED+P L HF+ +FA G Sbjct: 300 RDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTRTPGVR 359 Query: 343 PQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPI----------- 391 A+D L Y WPGN+RELEN +ERA++L G + L + Sbjct: 360 GAALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNATPVSGTPSVIS 419 Query: 392 ------PLGQSQDIQPLVE----VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 P + +PL E E+ I+AA+EK+ N AAR LGI R TL ++ + Sbjct: 420 ETASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARMLGINRSTLYYRMRK 479 >UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B9M1N5_GEOSF Length = 483 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 174/479 (36%), Positives = 266/479 (55%), Gaps = 41/479 (8%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 MT +L++DDD +L+ + G V L + AL+ + + ++ + D+ M Sbjct: 1 MT---AKLLILDDDPDILLMLKTVFHGEEMEVMLESESDAALKLILTERPNVAIFDISMP 57 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 G L+E K ++P + +++ T + + + A+EA+K GA DY+ KP D + L+++++KA Sbjct: 58 GKSGFQVLQEAKKIDPGLSIIMTTGHKTTQNAIEAMKFGAYDYVTKPFDTNKLRSSVQKA 117 Query: 121 LAHTHSIDA--------ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 L + + M+G S M + + VA S+ATVLI G+SG Sbjct: 118 LECNLLNRKVRYTKDTNQLKLEEDADDIMIGSSAEMIEIWKMVGKVADSDATVLIQGESG 177 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKEL+ARAI+ +S R +P + +NCAAL E+LLESELFGHEKGAFT A RR G+F + Sbjct: 178 TGKELLARAIYDNSRRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHARRIGKFEQC 237 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 +GGT+FLDEIG++S Q +LLR ++ +E +RVG N I VDVR+IAAT+R L V Sbjct: 238 NGGTIFLDEIGEMSLANQGKLLRVLECQEFERVGGNDTIRVDVRIIAATNRSLVTSVKEK 297 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR DL+YRL VV +P L+ R EDIPLL F+++F+ + K ++ P+ DLL+ + Sbjct: 298 TFRMDLFYRLRVVNFFLPPLKDRAEDIPLLIDLFVKKFSRKYGKTIRRVAPETTDLLLKH 357 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD-------------I 399 W GNIREL+N + A V + + +L + + D + Sbjct: 358 PWEGNIRELKNVINSATVFCKSDVLMPEDLESFLTAKAGFKEVDLDCAGDDYYEVFWKML 417 Query: 400 QPLVE-----------------VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 +P+ + +EK +I A+EK+ N+ AA+ LGI+R TL +L R Sbjct: 418 EPVFDGICLKNKGTIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLER 476 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 588 bits (1518), Expect = e-166, Method: Composition-based stats. Identities = 185/444 (41%), Positives = 268/444 (60%), Gaps = 11/444 (2%) Query: 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE-----QVFDLVLCDVRMAE 61 IL+ DDD + L+ L GY V A +G A+ DL+L D+R+ Sbjct: 3 TILIADDDKAIRRTLELHLTEVGYRVVTAANGSDAVNLALADTAIGHNIDLMLLDLRLTG 62 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 MDG L +K P +P++++TAY ++TA++A++ GA+D+L KP+D D+L ++K Sbjct: 63 MDGFEVLTLVKEKKPFLPIIMITAYDEMQTAIKAIRLGAIDHLGKPVDLDHLDEVIDKIF 122 Query: 122 AHTHSID-----AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKE 176 + +++ Q MVG++ AM+ + I VA S ATVLI G+SGTGKE Sbjct: 123 EMSALSRTGVTFSDSFDPHFEQNIMVGRTRAMKEVYKTIGAVADSRATVLIQGESGTGKE 182 Query: 177 LVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGT 236 +VARAIH +S +P + + C+AL+ ++LESELFGHEKGAFTGA + + G+F A GGT Sbjct: 183 MVARAIHFNSQFRNRPFIAVACSALSPTILESELFGHEKGAFTGAIRTKPGKFELAQGGT 242 Query: 237 LFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQ 296 LFLDEI +ISP +QV+LLR IQERE +RVG + I DVR++AAT+++L+ V +G FR Sbjct: 243 LFLDEISEISPEIQVKLLRFIQEREFERVGGIETIKADVRIVAATNKNLSTLVASGMFRN 302 Query: 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 DLYYRL VV+I++P LR+R+EDIP+L L++ K V+ + M+ ++ + WPG Sbjct: 303 DLYYRLKVVSIDLPPLRERKEDIPILVKFLLEKLHHETGKRVEIIPQETMNKILEHSWPG 362 Query: 357 NIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEK 416 N+RELEN + RAV+L G + L L ++PL EVE+E I L Sbjct: 363 NVRELENTLRRAVILSHGNMLLPESLHLE-EGCDGQERFPLLLKPLHEVEREHIQNVLCY 421 Query: 417 TGGNKTEAARQLGITRKTLLAKLS 440 K AA LGI+R TL ++ Sbjct: 422 VRNEKKRAAEILGISRPTLDRRIK 445 >UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUI1_9GAMM Length = 466 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 175/450 (38%), Positives = 262/450 (58%), Gaps = 10/450 (2%) Query: 1 MTHDNI-----DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLC 55 M+ ++ I ++DDD +L L G+ V ++ QA++ + ++ DLV+ Sbjct: 1 MSRKSLGSDPGHICIIDDDADFLRLLGLWLESEGHKVQAFSTPVQAVKAMERELPDLVIT 60 Query: 56 DVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQA 115 D+RM EMDG+ L+ ++ L+P +PV+++TA+ S+ AV A++ A YL KP + L++ Sbjct: 61 DLRMPEMDGMEVLEAVQELDPELPVILLTAHGSIPNAVAAMRAQAFGYLGKPFSSEELES 120 Query: 116 TLEKALAHTHSIDAETPAVTASQFG----MVGKSPAMQHLLSEIALVAPSEATVLIHGDS 171 + AL + + + ++ +SP M L+ E+ VA S+ +V + G+S Sbjct: 121 LVAAALRQRQASRETSRLRATLKDLAGQMILHRSPVMAKLVDELTRVAHSQTSVFLTGES 180 Query: 172 GTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVE 231 G+GKE VARAIHA+S R++ P V +NC A+ L ESELFGH KGAFTGA + G Sbjct: 181 GSGKERVARAIHAASPRAQGPFVAVNCGAIVADLAESELFGHVKGAFTGASQDHPGLIRA 240 Query: 232 ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNA 291 ADGGTLFLDEI D+ +QV+LLR +QE ++ VGS + VD+R+I+ATH+D+ A + Sbjct: 241 ADGGTLFLDEIADLPLSLQVKLLRVLQEGTLRPVGSREEYRVDIRVISATHQDICALTAS 300 Query: 292 GRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIH 351 G FR+DLYYRL+V+ + VPSL +R EDI LLA HFL R R R+ ++GF+P+A+D LI Sbjct: 301 GAFREDLYYRLHVIPLRVPSLAERPEDILLLAQHFLDREIARLRRPIQGFSPEALDKLIC 360 Query: 352 YDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVIL 411 WPGN+RELENAV A L +++ +P + E+ + Sbjct: 361 RPWPGNVRELENAVTLAAALTEKGWVAAETIPDPSRAGGRSAF-PPLQDAKAAFERGYLE 419 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 L T GN + AAR G R L + + Sbjct: 420 NLLRATDGNISRAARIAGRHRTDLYKLMRK 449 >UniRef50_C7LP79 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrionales RepID=C7LP79_DESBD Length = 458 Score = 587 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 161/441 (36%), Positives = 252/441 (57%), Gaps = 8/441 (1%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 ++I+ILVVDD+ + + L G + S ++A E + + +D+++ D+R+ + + Sbjct: 5 NSIEILVVDDESNIRKLFSRELASPGRTIHTVGSAKEAFEHLHKHYYDIIILDIRLPDAN 64 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 G+ + ++ P + ++++T Y+ V+ AV+A+K GA DY+ KP D ++ +EKA Sbjct: 65 GLELMTKLLETVPNVAIILITGYADVDNAVQAMKNGAYDYITKPFSLDRMEQVIEKAYQR 124 Query: 124 THSIDAETPAVTASQFG----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 S+ +G S ++Q + I AP++ VL+ G+SGTGK + A Sbjct: 125 VRLQRENELLRHNSEHKSMPKFIGHSKSVQDVRYLIEKAAPTDVPVLLTGESGTGKNVAA 184 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 A+HA S R+++PL+ NC ++ LL SELFG+ KGAFTGAD+ +G A TLF Sbjct: 185 AALHAKSRRADQPLIIKNCGTFDKELLRSELFGYCKGAFTGADRSHDGLLSLAHKATLFF 244 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DE+G+++ +Q LLR ++ + +RVG + VDVR I AT++DL EV AGRF Y Sbjct: 245 DEVGELTLELQGALLRVLETQHFRRVGDKEERCVDVRFIFATNKDLEKEVAAGRFHDAFY 304 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 +R+NV IE+P LR+RREDIP L +FL A+ +P+AM L+ WPGN+R Sbjct: 305 HRINVFNIELPPLRERREDIPALVEYFLVSLAKDG--QEYKISPRAMQQLMDNPWPGNVR 362 Query: 360 ELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGG 419 EL+N +ER ++L I+ + LP S P + + L E+E+ I + G Sbjct: 363 ELKNIIERGMILAENNIINVQALPFCQKSCQNP--REKGFSTLEELERSHISMVMHAVQG 420 Query: 420 NKTEAARQLGITRKTLLAKLS 440 NK+ AA+ LGI RKTL KL Sbjct: 421 NKSRAAQVLGIGRKTLYRKLE 441 >UniRef50_C1A568 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A568_GEMAT Length = 526 Score = 587 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 184/477 (38%), Positives = 270/477 (56%), Gaps = 42/477 (8%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 IL VDD+++ IL+ L G+ A + +AL+ + DL++ D RM + G+ Sbjct: 41 ATILYVDDEVAVGLILEDTLAQAGHTPVGARNVPEALQVLERGGIDLIISDYRMPGLTGL 100 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 ++ + IP++++T ++S+E AV ++K GA+DY+ KP+ L+ +++AL Sbjct: 101 EFIQLLTREGYDIPLIMLTGHASIEHAVTSIKAGAIDYITKPVRPQQLELAVDQALEFVR 160 Query: 126 SIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 ++ ++G SPA++ +L +++ AP+ ATVL+ G+SGTGKEL AR Sbjct: 161 LRRENETLRKEVMQFRNERQIIGDSPAIRRILQTVSMAAPTRATVLLQGESGTGKELFAR 220 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH S R +KP + LNCAAL E L+ES LFGHEKGAFTGA KR EG F A+ GTL LD Sbjct: 221 AIHDQSERRDKPFIKLNCAALPEGLVESALFGHEKGAFTGAIKRVEGAFERANRGTLLLD 280 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EI ++ +Q +LLR +QE+E +RVG I VDVR++A T+RDLA E + G FRQDLYY Sbjct: 281 EISEMRLDLQAKLLRVLQEQEFERVGGTSPIKVDVRIVATTNRDLAMEADHGTFRQDLYY 340 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL+ + + +P LR R ED+P+LA F R A K ++G + A++ L Y WPGNIRE Sbjct: 341 RLSTIPVLIPPLRDRAEDVPVLALRFAMRTAAEIGKKIEGLSQDALESLQQYPWPGNIRE 400 Query: 361 LENAVERAVVLLTGEYISEREL-----------------PLAIA---------------- 387 L++ +ERAV+L I L P AIA Sbjct: 401 LQHVIERAVILTPDPIIQPHCLEGTRFGLAHSLGAPNMRPRAIATPGAQPVLAVSGAAAA 460 Query: 388 ----STPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 +TP G + + + E+ +I AL N+T+AA LGI+ +TL KL+ Sbjct: 461 PGSMNTPPNGGIALSSLNVADAERVLIQHALAAADNNRTKAADMLGISVRTLRNKLN 517 >UniRef50_A1VBP1 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfovibrionales RepID=A1VBP1_DESVV Length = 469 Score = 587 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 175/465 (37%), Positives = 261/465 (56%), Gaps = 29/465 (6%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 + +L VDD+ S +L+ L V +A S RQA E++R +++V+ D+R+ + Sbjct: 2 RTSYSVLAVDDEPSIGKLLEKELSTPARAVHVAGSARQARERLRRATYEVVVLDIRLPDA 61 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 DGI + E++ P + V+++T + +++ AVEA+K GA DY+ KP + L+ +E+A Sbjct: 62 DGIEFMVELRQRYPDMEVILITGHGNIDNAVEAMKLGAYDYITKPFNLTELEVVVERAYQ 121 Query: 123 HTHSIDAETPAVTASQFG-----MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 + A G ++G S ++ + I VAP++ VLI G+SG GKE+ Sbjct: 122 RAFLRNENRALRHAHDRGRPGVTLIGNSQVIKEVRYLIEKVAPTDVPVLITGESGAGKEV 181 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 A AI + R++KP + NCA L + L SELFGH +G+FTGA + R+G A+ GTL Sbjct: 182 AAHAIQSLGTRADKPFIIKNCATLQKELARSELFGHVRGSFTGALESRDGLMAFANKGTL 241 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG++ +Q LLR ++ + +RVG S D+RLI AT+R LA EV AGRF + Sbjct: 242 FLDEIGELPMEVQASLLRVLENKTYRRVGEKDHRSCDLRLIFATNRTLAGEVEAGRFHEA 301 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LY+R+NV IE+P LR+R+EDIPLLA FL R N + + +AM L+ Y WPGN Sbjct: 302 LYHRINVFNIEMPPLRERKEDIPLLAEFFLARLG--NGRDDLRISDKAMSCLMQYAWPGN 359 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIA----------------------STPIPLGQ 395 +REL N +ER+++L I+E LP +A P +G+ Sbjct: 360 VRELRNVLERSIILAENNLITEHALPRDLAGFAGGSVGQSGVTGASGVCGTPGAPGAMGE 419 Query: 396 SQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 Q L +E+E I LE N++ AA LGI+RKTL K+ Sbjct: 420 MQGPLSLEAMEREHIARILEFYDNNRSLAATALGISRKTLYRKMR 464 >UniRef50_Q30YU4 Two component transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=Q30YU4_DESDG Length = 465 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 172/464 (37%), Positives = 266/464 (57%), Gaps = 27/464 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ IL+++DD + +L LR GY V+ A+ + + R+ FDL+L DV + Sbjct: 1 MSE---HILLIEDDNAFQEMLSEALRSRGYAVSSASRAEEGISMARQHDFDLILTDVMLP 57 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 M G+ + +++ P +++MTAYS+ E A+EA++ GA D+ KP L + +A Sbjct: 58 GMSGVEAIPQLREAAPGSDIIVMTAYSTRELALEAIRLGAYDFFSKPFSLKELDIVVRRA 117 Query: 121 LAHTHSIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L ET + ++G S M+ + + + VAP ++TVLI G+SGTGK Sbjct: 118 LEKRRLQKEVTTLRETLRHDSPVQRIIGDSAPMRAVKTLVEKVAPLDSTVLITGESGTGK 177 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 ELV+ + A S R+ P V +NCAA+ E L E+ELFGHEKGAFTGA + G+F A GG Sbjct: 178 ELVSDTLRALSGRAGAPFVKVNCAAIPEHLFENELFGHEKGAFTGATSAQPGKFELAHGG 237 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TL LDEIGD+ +Q +LLRA++E++++R+G + ++V+VR+IAAT+++L V FR Sbjct: 238 TLLLDEIGDMPAAIQPKLLRAVEEKQIERLGGRRPVAVNVRIIAATNQNLRELVARKAFR 297 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DLYYRL V I +P LR R+EDIP LA H L++ V G T A+ L+++ WP Sbjct: 298 EDLYYRLGVAVIMLPPLRDRKEDIPRLAEHILRKLGLTLGIPVHGITAAAVQALMNHHWP 357 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQS------------------Q 397 GN+R+L N +ERA + G I+ +++ A+A Q Sbjct: 358 GNVRQLANLLERAAISAQG-RITAQDIAAALAVQNGTSPQPCTAQSPHDAPAAEDCLRMP 416 Query: 398 DIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + L ++E+ ++L AL + G++ AA LG+T K + AKL + Sbjct: 417 LRETLHQMERNLLLEALRRAEGSQKNAAALLGLTPKNMWAKLQK 460 >UniRef50_C0QA67 Sigma-54 dependent transcriptional regulator/response regulator n=3 Tax=Deltaproteobacteria RepID=C0QA67_DESAH Length = 455 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 180/443 (40%), Positives = 258/443 (58%), Gaps = 10/443 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 I+ILVVDD+ S +L+ L + A +GR+AL +R+ VFD+++ D+ + + +G Sbjct: 10 PINILVVDDEKSIRRLLEKELASARRCITTAGNGREALIAIRKNVFDVIVLDISLPDANG 69 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA-- 122 I + + ++++T Y V+ AVEA+KTGA DY+ KP D L+ +EKA Sbjct: 70 IELMSRFHEEILGVQIILITGYGDVDDAVEAMKTGACDYITKPFDLGRLEQVIEKAYQIG 129 Query: 123 --HTHSIDAETPAVTAS--QFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 H + +VG S AM+ + I VAP+ VL+ G+SGTGK +V Sbjct: 130 SLHKKKFLKQQGLHKKKIFPDQIVGHSAAMEEVRFLIGKVAPTSVPVLVTGESGTGKNVV 189 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 AR +H S R E PL+T NCA L E L+ SELFG+ KGAFTGA+ R+G AD GTLF Sbjct: 190 ARQLHGLSLRGEYPLITKNCATLQEELIRSELFGYCKGAFTGAEDSRDGLLDLADKGTLF 249 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDEIG++S +Q LLR ++ + + VG VD+R + AT+RDL EV GRF + L Sbjct: 250 LDEIGELSVGVQASLLRVMENQTFRPVGDKHERKVDIRFVFATNRDLKEEVAKGRFSEAL 309 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 ++RLNV AI++ LR+R+E+IP+L +FL + + + AM L+ YDWPGN+ Sbjct: 310 FHRLNVFAIKILPLRKRKEEIPVLMEYFLGQIS--TGSPPCMVSKNAMKRLMAYDWPGNV 367 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPI--PLGQSQDIQPLVEVEKEVILAALEK 416 REL N +ER V+L I+ER LPL + T S L E++K I+ L+ Sbjct: 368 RELYNVMERGVILADNNIITERCLPLELLETTEGTEDKNSTLFPTLEELDKNYIMKVLDH 427 Query: 417 TGGNKTEAARQLGITRKTLLAKL 439 GN+++AA LGI+RKTL KL Sbjct: 428 VDGNRSKAAEILGISRKTLYRKL 450 >UniRef50_C1SIN5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIN5_9BACT Length = 431 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 190/435 (43%), Positives = 281/435 (64%), Gaps = 10/435 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + IL+VDD+ +H +L+ L G+ A A +G +ALE + E FD++L D++M MDG+ Sbjct: 1 MKILIVDDEKNHRMMLKLHLEDAGHKTAQAENGLKALEALDEGRFDVILLDMKMDVMDGL 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L + ++PV+++TA+S+V+TAVE++K GA+DYL KP+D L LEK + Sbjct: 61 TFLGMMNRKGHSVPVIVITAFSTVKTAVESMKLGAVDYLTKPVDIPQLMDALEKINEQSG 120 Query: 126 SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 + V +FG V + ++ ++ LVAP++ATVLI G+SGTGKE+VAR+IH + Sbjct: 121 DV---LTPVENYRFGGVYTQEGLGSIIEQLKLVAPTDATVLILGESGTGKEIVARSIHDN 177 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S R+++P + +NCAAL+E+++ESELFGH KGAFT A K +G F ADGGTLFLDEIG++ Sbjct: 178 SKRAQRPYLAINCAALSENIIESELFGHVKGAFTTAVKDNKGLFEAADGGTLFLDEIGEL 237 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 S +Q +LLR +QE +RVG + + +VR++AAT+R+L G FR+DLY+RL V Sbjct: 238 SLNVQAKLLRVLQEGAFERVGDTRTLKTNVRIVAATNRNLKKLSEKGDFREDLYFRLAVF 297 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 +EVP LR+R+E+I L F+ + AE+ K +K P + L Y +PGNIRELEN V Sbjct: 298 PVEVPPLRERKEEIAPLVKFFIDKHAEKLGKLIKSADPAYIRKLSDYGFPGNIRELENIV 357 Query: 366 ERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAA 425 ER+++L TG + LP + + E+++I+ AL+KTGGNKT+AA Sbjct: 358 ERSIILTTGTKLEPVTLPAF-------GTERDGGLSIRGNERDLIIKALKKTGGNKTKAA 410 Query: 426 RQLGITRKTLLAKLS 440 L I+R+TL KL Sbjct: 411 EILQISRRTLHNKLK 425 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 174/474 (36%), Positives = 260/474 (54%), Gaps = 37/474 (7%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +L++DDD +L+++ G Y + L + AL++V ++ + D+ + + G Sbjct: 2 TAKLLILDDDHDILLMLKSVFAGEDYELLLESDSEGALKRVISDRPNVAIMDISLPQKSG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 I LKE K ++P + V++ T Y + + A+EA+K GA DY+ KP D L+ ++KAL Sbjct: 62 IEVLKEAKKIDPGLAVIMATGYKTTQNAIEAMKHGAFDYVTKPFDMTKLKGAVKKALECN 121 Query: 125 HSIDAETPAVTASQFG-------MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 Q M+G SP M + + VA S+ATVLI G+SGTGKEL Sbjct: 122 LLSRKVRYTRERPQVEEDLTEDLMIGSSPEMIEIWKMVGTVADSDATVLIQGESGTGKEL 181 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 +ARA++ +S R +P + +NCAAL E+LLESELFGHEKGAFT A RR G+F + +GGT+ Sbjct: 182 LARAVYNNSKRKNRPFLAVNCAALPEALLESELFGHEKGAFTDAHSRRIGKFEQCNGGTI 241 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDEIG++S Q + LR ++ +E +RVG N+ I VDVR+IAAT++ L V FR D Sbjct: 242 FLDEIGEMSQANQGKFLRVLENQEFERVGGNETIKVDVRVIAATNKSLITNVKEKTFRMD 301 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRL VV +P LR R EDIPLL F+++F+++ K +K P+ + +L + W GN Sbjct: 302 LYYRLRVVNFFLPPLRDRAEDIPLLVELFVKKFSKKYGKNIKAVAPETLAMLTSHPWEGN 361 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPI------PLGQSQDIQPLVEV------ 405 IREL+N + A V G+ + + + + + + Sbjct: 362 IRELKNVINSATVFCRGDILVPGDFESFLTAKAGFKEVDLEAAGDDYYEVFWSMLEPVFD 421 Query: 406 ------------------EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 EK +I A+EK+ N+ AA+ LGI+R TL +L R Sbjct: 422 GICQKNKGAIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGISRNTLRDRLER 475 >UniRef50_B8FZ22 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZ22_DESHD Length = 494 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 173/488 (35%), Positives = 270/488 (55%), Gaps = 52/488 (10%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 + +L++DD+ +IL L GY + A + ++ + ++E +F+ VL D+R+ + DG Sbjct: 4 HQRVLILDDEEDLRSILAQRLGRRGYEIMEAATAQEGMALLQETIFEAVLLDIRLPDGDG 63 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L+ +K P + V+++T + ++E+A+EA+K GA DYL KP + L+ TL+KAL Sbjct: 64 LQLLQAMKKRQPDLQVIMLTGHGTLESAIEAMKAGAYDYLTKPCNLSELEITLQKALEQR 123 Query: 125 HSIDAETPAVT-----ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + T ++ ++G S M+ L + +A ++ VL+ G+SGTGKEL A Sbjct: 124 KLMVENTGLRQVVHRQNAELLIIGDSEKMRSLKAMTRKIAQTDTPVLLQGESGTGKELFA 183 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 RA+H S RS + + LN A++E+L+ESELFGHEKGAFTGA+ + G AD GTLFL Sbjct: 184 RALHVWSPRSGQAYIPLNAGAVHETLMESELFGHEKGAFTGANAVKLGLVEMADQGTLFL 243 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++ +QV+LLR ++ E +RVG N++ V+VR++ AT+R+L EV AGRFR+DLY Sbjct: 244 DEIGEMPLNLQVKLLRFMETGEFRRVGDNRLRRVNVRIVTATNRNLPEEVKAGRFRKDLY 303 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQ----RFAERNRKAVK--------GFTPQAMD 347 YRL + + +P LR+R+ DI LA HFL+ R + + P+ + Sbjct: 304 YRLTGMVLHIPPLRERKGDILQLAEHFLRTGLRRHTLQGGNPAQDRSQSQTIHLAPETQE 363 Query: 348 LLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ------- 400 L+ YD+PGN+REL + +ER ++L G I R+L + + Sbjct: 364 ALLAYDFPGNVRELAHLMERGMILAEGPLIRIRDLWPEHGEGRSSIQTELPLPDEERAAE 423 Query: 401 ----------------------------PLVEVEKEVILAALEKTGGNKTEAARQLGITR 432 L E+EK+ ILA ++K GNK AAR LGI+ Sbjct: 424 MDEKSIKTERQGDQAEQENQGDVLAGYLTLAEIEKDYILATMKKVDGNKARAARLLGISV 483 Query: 433 KTLLAKLS 440 + L K+ Sbjct: 484 RNLYRKME 491 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 181/450 (40%), Positives = 265/450 (58%), Gaps = 12/450 (2%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ D + ILV DDD + IL+ L +AN G QAL+ + E DLV+ D +M Sbjct: 1 MSRD-LTILVADDDRTTTAILKNTLEKQSLTPVVANDGIQALKILEETPVDLVIADYQMP 59 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +DG L+ +K IP +++TA+ SV+ + A++ GA++YL+KP+D ++ +EK Sbjct: 60 GLDGFELLQAMKDRGMDIPFVMVTAHGSVDMTMNAMRLGAIEYLVKPVDPLDIVVLVEKT 119 Query: 121 LAHTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175 L + +VG+SP MQ L I + S A VLI G+SGTGK Sbjct: 120 LNINRMKSRLSRLQKEVEKKYHFTNIVGQSPQMQILFESIHKASKSTANVLITGESGTGK 179 Query: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 EL A+A+H + E P V +NC+A + LESELFGH KGAFT A + GRF A+ G Sbjct: 180 ELAAKAVHYNGPLKEGPFVAVNCSAFSSGTLESELFGHVKGAFTDAHRDHMGRFELANKG 239 Query: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295 TLFLDE+GDI +QV+LLR +Q++ +RVG+ + I D RL+AAT+RDL V G+FR Sbjct: 240 TLFLDEVGDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLKDLVRKGKFR 299 Query: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355 +DL+YRLNV+ + P+LR+ EDIPLL HFL+R+ + +++K + AM ++ Y WP Sbjct: 300 EDLFYRLNVIGMTTPALREHPEDIPLLISHFLKRYGQVGGRSIKTLSMHAMKIMQEYRWP 359 Query: 356 GNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQD------IQPLVEVEKEV 409 GN+R+LENA+E A + G I +LPL I + +D + + +EK + Sbjct: 360 GNVRQLENAIESAAAMCDGSMIRTADLPLEITAPQSEDPLREDAYRGTLPEVVERIEKHM 419 Query: 410 ILAALEKTGGNKTEAARQLGITRKTLLAKL 439 IL ALE+ K AAR LG++ + + K+ Sbjct: 420 ILRALEQNQWVKAHAARTLGVSERVVSYKM 449 >UniRef50_Q1Q480 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q480_9BACT Length = 457 Score = 586 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 175/445 (39%), Positives = 272/445 (61%), Gaps = 8/445 (1%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE- 61 D +L+V+D+ + IL LR G V +SG +A E +++Q F +++ D+R++ Sbjct: 1 MDKARVLIVEDEDIYRKILCNTLREHGIEVQATDSGEEAWELIKQQRFPVIISDIRLSGN 60 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 + G+ L++ K L +L++TA+ +E AVEA++ GA Y+ KP + +++ A L++ + Sbjct: 61 ISGMDLLRDAKELY-DPSILMITAFGEIEMAVEAMRLGAFSYITKPFEVEDILANLDRMM 119 Query: 122 AHTHSIDAE----TPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 SI + + G++G S M L++ A S+AT+LI G+SGTGKEL Sbjct: 120 LQQRSISDHLLPSNVEELSQRTGIIGNSKKMCDLVNIALKAARSDATILITGESGTGKEL 179 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 +A+AI+ +S+R K V +NCA L + LES LFGH KG++TGA K + G F +ADGGTL Sbjct: 180 IAKAIYMNSSRKNKEFVAINCATLTDEFLESALFGHVKGSYTGAMKDKIGLFEKADGGTL 239 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 F+DE+GD S +Q ++LR +QE E +GS +VR+IAAT++DL V FR+D Sbjct: 240 FMDEVGDTSKSIQAKILRVLQEGEFIPLGSTDTKKANVRIIAATNKDLLQSVEKNEFRED 299 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 LYYRLNV+ I +P LR+R+ DIPLL HF+++ + K V P+ ++L+ YDWPGN Sbjct: 300 LYYRLNVINIAMPPLRERKSDIPLLINHFIKKNNVKLNKKVIRIAPEIEEILMDYDWPGN 359 Query: 358 IRELENAVERAVVLLTGEYISERELPLAI--ASTPIPLGQSQDIQPLVEVEKEVILAALE 415 +RELEN +ER +VL +G ++++ LP + IP E EKE+I+ L+ Sbjct: 360 VRELENVIERTMVLCSGNKLAKKHLPGCVLPQKGDIPPITIAPGTSWKEAEKELIMKTLQ 419 Query: 416 KTGGNKTEAARQLGITRKTLLAKLS 440 T GNK EAA+ LGI+ + + ++ Sbjct: 420 LTRGNKQEAAKMLGISLRKIEYRVK 444 >UniRef50_C0QLY7 Putative response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLY7_DESAH Length = 463 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 170/459 (37%), Positives = 270/459 (58%), Gaps = 21/459 (4%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ILVVDD+ + + + +L GY V + SGR+ L+++ FDLVL D++ + Sbjct: 1 MIESRILVVDDEPAIASGCKMILSEQGYRVEIEISGREGLKKLLSSPFDLVLLDIQFPHI 60 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 +GI LKE+K P + V+IMT +V AV+A+K+GA D++ KP + L ++ KAL Sbjct: 61 NGIDILKEVKKQRPDLAVIIMTGNGTVNNAVDAMKSGAFDFITKPFSEEQLVCSVTKALE 120 Query: 123 HTHSIDAETPAVTA-----SQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 + ++G++ ++ + +I V+P ++TVL+ G+SGTGKEL Sbjct: 121 SIKLVKENNSLKKQLYDKFDFSNIIGETSEIKKIFEKIERVSPMDSTVLLDGESGTGKEL 180 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 A+AIH S R+ + ++C+ + +++ESELFGH KGAFTGA+ EG F A GTL Sbjct: 181 FAKAIHVRSTRASCRFLAVDCSTFSSTVMESELFGHVKGAFTGAETAHEGIFGAACDGTL 240 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 FLDE+G++ +Q +LLR ++ E + VGSNQI R++AAT+++L + G FR+D Sbjct: 241 FLDEVGNLDLDIQGKLLRVLETGEYKPVGSNQIKKSQARVVAATNKNLVQMIKEGTFRED 300 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRLNV I++P LR+RR+D+P +A HFL+ F + K + GF+ A+ L+++DWPGN Sbjct: 301 LFYRLNVFPIKIPPLRERRDDVPKIAYHFLRLFCRKAHKKIHGFSDDALSALVNFDWPGN 360 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVE------------- 404 +R+L+N VER V++ E + REL + P+ L + + L E Sbjct: 361 VRQLKNVVERLVIMCDKEQLDHRELMDNLEIKPVALVRDIPL-TLEELKRARKDFLEDSF 419 Query: 405 --VEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 VE+ +L AL+ GN T+AA+ +G+ R A + + Sbjct: 420 RPVERLFLLRALDDAKGNITQAAKAVGMQRSNFSAMMKK 458 >UniRef50_Q7UVC1 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Rhodopirellula baltica RepID=Q7UVC1_RHOBA Length = 498 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 174/443 (39%), Positives = 247/443 (55%), Gaps = 7/443 (1%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 D + IL DD+ ++ L GY V + G A++ + ++ D +L D+ M M Sbjct: 48 DGMHILFADDEPQLQKLMGTELPRMGYRVTVCPDGPTAVDVLSKEPIDCLLVDLDMPGMS 107 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 GI + + + P I +IMT S ETA+EAL+ G DYL+KP + A + + Sbjct: 108 GIEVIARAREIRPEIEAVIMTGNPSQETAIEALRHGTFDYLMKPCRLAEISALMGRVSER 167 Query: 124 TH-----SIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELV 178 + ++G++ +M + IA VAP+E+TVLI G++G GKELV Sbjct: 168 REWNRLVAALRHRLQRAEGDSDLIGENQSMHAVRKLIAKVAPTESTVLIRGETGCGKELV 227 Query: 179 ARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLF 238 ARAI S RSE+P V +NC AL E+L+ESELFGH KGAFTGAD R G F A GGTLF Sbjct: 228 ARAIADESLRSEQPFVAINCGALPETLIESELFGHVKGAFTGADSGRMGLFEVASGGTLF 287 Query: 239 LDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDL 298 LDE+G++ +Q +LLR ++ +++R+G NQ I VDVR++ ATHRDL V G FR+DL Sbjct: 288 LDEVGELPLAVQAKLLRVLETGDIRRLGDNQSIKVDVRVVCATHRDLEKMVTEGTFREDL 347 Query: 299 YYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNI 358 +R+N + +P+LR R +D+P LA H L+R + + FT AM L + WPGN+ Sbjct: 348 MFRINTFELRLPALRDRIDDLPALAEHLLRRHRAD-GTSGQLFTEAAMAELQSHQWPGNV 406 Query: 359 RELENAVERAVVLLTGEYISERELPLAIASTPIPLG-QSQDIQPLVEVEKEVILAALEKT 417 REL N +E A VL I LP A + + E+E I A+ + Sbjct: 407 RELANVIEHASVLCDALPIDVEHLPQHFARRQLRADLADTAPMTMREIELRAIERAMTRH 466 Query: 418 GGNKTEAARQLGITRKTLLAKLS 440 GNK A +LG++ KTL KL+ Sbjct: 467 NGNKKAVAEELGMSLKTLYNKLN 489 >UniRef50_Q250F7 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q250F7_DESHY Length = 456 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 178/450 (39%), Positives = 272/450 (60%), Gaps = 17/450 (3%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 + +L+V+D++ T+L+ L N+ LA++ QAL+ + + +D++L D R+ + +G+ Sbjct: 1 MKLLIVEDEVDFATLLKQRLTRKKINIDLAHTIEQALDWLGKVSYDVILLDQRLPDGEGL 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 + L +K +P + V+++T + S+ETA++++K GA DYL KP + L+ TL +A Sbjct: 61 SLLTHVKEADPFVEVVVLTGHGSLETAIQSIKQGAYDYLTKPCNTTKLEFTLTQAYEKKR 120 Query: 126 SIDA-----ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E ++G+S ++ L+ + V SEAT+L+ G+SG+GKEL+AR Sbjct: 121 LAEQAAGLSEALRRQTGSEPIIGQSSEIKGLMQMVEKVKDSEATILVLGESGSGKELIAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 ++H SAR +KP LNCAAL L+ESELFGHEKGAFTGA + G ADGGTLFLD Sbjct: 181 SLHFWSARKDKPFQALNCAALPNQLVESELFGHEKGAFTGAAGVKMGLIEIADGGTLFLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EI ++ +Q +LLR ++ E RVG+ + V +R++AAT++ L EV AGRFR+DLY+ Sbjct: 241 EIAEMDLDIQAKLLRLLEYGEYFRVGATRSRKVKLRVVAATNKRLEQEVAAGRFREDLYH 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV IEVP LR R+ DIPLLA + L + +N K +P+A+++L+ YD+PGN+RE Sbjct: 301 RLNVVQIEVPPLRNRKADIPLLADYLLAQKCPQNN--PKVLSPEALEVLLSYDFPGNVRE 358 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ----------PLVEVEKEVI 410 L N +ER +L G I L P+ + + L E++ I Sbjct: 359 LANILERGCLLSYGPTIEAEHLFQPQMGKRTPVSKKGLEEEAPRWGDTDLSLENCERQHI 418 Query: 411 LAALEKTGGNKTEAARQLGITRKTLLAKLS 440 L L+ G NKT+AA++L I KTL K+ Sbjct: 419 LRVLKMAGENKTKAAQELKIGLKTLYRKVK 448 >UniRef50_Q0VSC9 Sigma-54 dependent DNA-binding response regulator n=12 Tax=Proteobacteria RepID=Q0VSC9_ALCBS Length = 464 Score = 586 bits (1511), Expect = e-166, Method: Composition-based stats. Identities = 179/455 (39%), Positives = 266/455 (58%), Gaps = 19/455 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+ + +LVVDD+ +L L A+S A ++++E +DL L D+ + Sbjct: 1 MSAEAPHVLVVDDEADLRELLVITLGRMKLQATAADSLSTAKQRLKEAHYDLCLTDMNLG 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 + G+ L+ I P +P ++TAY S++TA +A+K GA D++ KP+ D L+ +E Sbjct: 61 DGTGLELLQFISQYCPTMPTAVITAYGSMKTATDAMKYGAYDFIAKPVALDRLRQLIEDG 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 L E + ++G +P+M L S++ +A S+A + I G+SG+GKE +AR Sbjct: 121 LGIN-----EVEEHHEEEDNLIGDAPSMVALKSQVRKLARSQAPIYISGESGSGKERIAR 175 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH R EKP V +NC A+ L+ESE FGH KGAFTGA + R+G F EADGGTLFLD Sbjct: 176 LIHTLGPRREKPFVAVNCGAIPSELMESEFFGHRKGAFTGAVEDRKGLFREADGGTLFLD 235 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ D+ MQV+LLRAIQE+ V+ VG + V++R++ ATH++L E+ GRFRQDL+Y Sbjct: 236 EVADLPLHMQVKLLRAIQEKSVRPVGEAKEFQVNLRILCATHKNLEDEMEEGRFRQDLFY 295 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV+ VP LR+RREDIP L H L R ++ + A++ + +Y +PGN+RE Sbjct: 296 RLNVIEAHVPPLRERREDIPKLVRHILDRLSQAWEIPPPSVSSDAVNAIGNYAFPGNVRE 355 Query: 361 LENAVERAVVLLTGEYISERELPLA--------------IASTPIPLGQSQDIQPLVEVE 406 LEN +ERA+ L G I L L + PI + + L E+E Sbjct: 356 LENTLERALTLCDGNTILPEHLRLPSNRSGLASNRSSTSTSPPPIRPSEQSLEEFLQEIE 415 Query: 407 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 K+ IL AL+ T N+T AA++LG+T ++L +L + Sbjct: 416 KQEILKALDTTHWNRTAAAKKLGMTFRSLRYRLKK 450 >UniRef50_D0MGD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGD9_RHOM4 Length = 472 Score = 586 bits (1511), Expect = e-166, Method: Composition-based stats. Identities = 170/459 (37%), Positives = 267/459 (58%), Gaps = 20/459 (4%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMA 60 D IL+VDD+ T+ + L G + + QA+E ++++ FDLV+ D +M Sbjct: 6 RDVPHILLVDDEHLLHTLFERLFTRHGLRLTSCYNALQAMEVLKKEADAFDLVITDFKMP 65 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 +MDG+ L I+ +P + V+++TA+++V+ AV A++ GA+DY+ KP + L ++ A Sbjct: 66 DMDGLELLAYIRQEHPDLQVIMITAHANVQHAVRAMQNGAIDYIPKPFSTEELVERVQAA 125 Query: 121 LAHTHSIDAET--------PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 LA VG+ P ++ L + VA ++A V I G+SG Sbjct: 126 LARRREQQEARAKQPARTSQRRARPTIEYVGEHPMIRRLKEMLPRVAANKAPVFIQGESG 185 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKE++AR IH S R+E P V +NCA L L+ES LFGH KGAFTGA + G F A Sbjct: 186 TGKEILARLIHQMSDRAEGPFVAINCANLPRELVESHLFGHRKGAFTGAIEDMTGAFERA 245 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 +GGTL LDEI ++ +Q +LLR +QE+E+Q+VGS + +DVR+IA ++R+L+ + G Sbjct: 246 EGGTLLLDEITEVDLAIQAKLLRVLQEQEIQKVGSTEPRKIDVRVIATSNRNLSEAIAKG 305 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR+DLY+RL+V + VP LR+R D+PLL HF++++ E K + M+ + Y Sbjct: 306 EFREDLYHRLSVFPLSVPPLRERMSDVPLLVAHFIKKYCELYGLPPKKVSDALMERFMQY 365 Query: 353 DWPGNIRELENAVERAVVL-LTGEYISERELPLAIASTPIPLGQSQDIQ---------PL 402 WPGN+R+LEN V+R V+L E I ++ + P Q+ + + Sbjct: 366 PWPGNVRQLENYVQRGVLLSAEREVIEVEDVFNDFFADAEPARQNASAEKEELLGRVQTI 425 Query: 403 VEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++E+E+IL AL++T N+ AA++LGI+ +T+ KL R Sbjct: 426 EDMEREMILRALKETNNNQQLAAQKLGISARTIRNKLKR 464 >UniRef50_B1ZTC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZTC1_OPITP Length = 486 Score = 585 bits (1510), Expect = e-166, Method: Composition-based stats. Identities = 179/397 (45%), Positives = 250/397 (62%), Gaps = 8/397 (2%) Query: 1 MTH--DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV-FDLVLCDV 57 M+ ILV+DDD L +L GY V A +G Q + V++ DLVL DV Sbjct: 1 MSDLAKPASILVIDDDAEIRYSLSRVLSSRGYTVLEAPNGEQGVVAVKKGPAPDLVLLDV 60 Query: 58 RMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATL 117 RM+ M GI L+ I++ NP V++MTA+ + +TA+EA+K GA DY++KP D + A Sbjct: 61 RMSGMGGIEALQLIRSANPKQLVILMTAFGTAQTAIEAMKYGAFDYVMKPFDPQKVLALA 120 Query: 118 EKALAHTHSIDAETPAV-----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 + AL + A + + G+VG SP MQ + I V S+ TV+I G+SG Sbjct: 121 DAALKTRADLRAVSDYKPTINADDYREGIVGSSPVMQEVFKIIGQVTASDVTVMITGESG 180 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 TGKELVAR+I S RS KP + +NCAA+ ++L+ESELFGHEKG+FTGA +R G+F Sbjct: 181 TGKELVARSIWKHSHRSSKPFIAVNCAAIPDNLIESELFGHEKGSFTGATGQRLGKFELC 240 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 DGGT+FLDEIGD++ Q ++LR +Q E+QRVG + I VDVR++AAT++DL A V A Sbjct: 241 DGGTIFLDEIGDMALATQTKILRVLQAGEIQRVGGTETIRVDVRVLAATNKDLEAMVKAK 300 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 FR+DLYYRLNVV I++P LR+R EDIP + LQ ++ + +P+AM L + Sbjct: 301 TFREDLYYRLNVVRIKMPPLRERAEDIPQIVDFCLQNLVKQKKARATKVSPEAMAALTRH 360 Query: 353 DWPGNIRELENAVERAVVLLTGEYISERELPLAIAST 389 WPGN+RELEN + R+ V+ GE I E++LP + + Sbjct: 361 SWPGNVRELENVIYRSAVIAQGEAILEKDLPAELRTG 397 >UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobacteria RepID=YFHA_ECO57 Length = 444 Score = 585 bits (1510), Expect = e-166, Method: Composition-based stats. Identities = 194/441 (43%), Positives = 273/441 (61%), Gaps = 7/441 (1%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+H +L+VDDD +L L GY+V A SG + L + + DLV+ D+RM Sbjct: 1 MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMD 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 EMDG+ EI+ + P +PV+I+TA+ S+ AV A + G +L KP+D D L ++ A Sbjct: 61 EMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDA 120 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 L + E + +V +SP M LL + LVA S+ +VLI+G SGTGKE+ A+ Sbjct: 121 LEQSAPATDERW-----REAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQ 175 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 AIH +S R+ KP + +NC AL E LLESELFGH +GAFTGA REG F A+GGTLFLD Sbjct: 176 AIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD 235 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIGD+ +QV+LLR +QER+V+ +GSN+ I ++VR+I+ATHRDL + G FR+DLYY Sbjct: 236 EIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYY 295 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNVV++++P+L +R EDIPLLA H L++ AER++ V+ F+ AM L+ WPGN+R+ Sbjct: 296 RLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQ 355 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN 420 L N +E+ V L + IS+ + A+ L + + + E + L+ T GN Sbjct: 356 LVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARN--QFELNYLRKLLQITKGN 413 Query: 421 KTEAARQLGITRKTLLAKLSR 441 T AAR G R LSR Sbjct: 414 VTHAARMAGRNRTEFYKLLSR 434 >UniRef50_A3EPR9 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Leptospirillum RepID=A3EPR9_9BACT Length = 489 Score = 585 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 186/460 (40%), Positives = 277/460 (60%), Gaps = 22/460 (4%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ-VFDLVLCDVRM 59 M+ D ++LVVDD+ L+ L G++V A +G++AL + +++ + V+ D+RM Sbjct: 1 MSPDESNVLVVDDEREMGLALRESLSRDGFHVDWAKNGQEALTRFKQEGPYQWVISDLRM 60 Query: 60 AEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEK 119 E DG + L+ ++ ++PA V++MTA+ +V AV+A++ GA+D+++KP + L+ L Sbjct: 61 PEGDGWSLLESLRQISPATRVILMTAFGTVPQAVDAMRMGAVDFVMKPFSPEELRKKLT- 119 Query: 120 ALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 A A + DA P A ++ + P + +L + VA + AT+LI G+SGTGKEL+A Sbjct: 120 ASAGRRTPDAGRPVWEAVSRPILTRDPGLIGVLKMLDGVARTPATILIEGESGTGKELLA 179 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 R +H S R +P V +NCAAL ESLLESELFG+EKGAF+GA R+ G+F A GTL L Sbjct: 180 RYVHERSPRVHRPFVAVNCAALPESLLESELFGYEKGAFSGALARKIGKFELAHTGTLLL 239 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEIG++ +Q +LLR IQEREV RVG + VD+R++A T+R++ V G+FR+DLY Sbjct: 240 DEIGEMDLALQAKLLRVIQEREVDRVGGASPVPVDIRIVATTNRNMKEMVKTGQFREDLY 299 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIR 359 YRL V + VP+LRQR DI LLA HF ++F + V T +A++ L +PGN+R Sbjct: 300 YRLRVFPVRVPALRQRPADIVLLANHFREKFRLEH-MEVGELTAEAVECLRSASFPGNVR 358 Query: 360 ELENAVERAVVLLTGEYISERE-----------LPLAIASTPIPLGQSQ--------DIQ 400 ELEN + +A L G +I L A ++ P Q Sbjct: 359 ELENVIIQAAFLAGGGHIGPEHLLSLGGEETNGLSSAFSTPPKEQKTGDGFSPNGVRPGQ 418 Query: 401 PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + EVE+E+I LE G N+T+AA+ LGI+ +TL KL+ Sbjct: 419 SVWEVERELIRVTLEACGQNRTQAAKMLGISVRTLRNKLN 458 >UniRef50_A0L4H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Proteobacteria RepID=A0L4H3_MAGSM Length = 470 Score = 585 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 177/451 (39%), Positives = 254/451 (56%), Gaps = 19/451 (4%) Query: 7 DILVVDDDISHCTILQALLRGW-GYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +L+V+D S + Q ++G + V+ G AL + + DLVL D+++ +M G+ Sbjct: 9 SLLLVEDSPSMAMVYQEYIKGEPQWQVSHCKEGHAALVYLHQHTPDLVLLDLQLPDMHGL 68 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 LK I V+I+TA+ SV+TAVEA + GA DYL KP + L T+ AL + Sbjct: 69 EILKAIHEQQLPTQVVIITAHGSVDTAVEATRLGAFDYLEKPFSANRLLVTMGNALRQKN 128 Query: 126 SIDAETPAV----TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 G +G SP MQ L I APS AT+ I G+SGTGKE+ A A Sbjct: 129 LSLEVQAYRDSFDRDHYHGFIGASPTMQALYQTIESAAPSSATIFITGESGTGKEVCAEA 188 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R +P + +NCAA+ + L+ESELFGH KG+FTGA R+G A GTLFLDE Sbjct: 189 IHKASTRRNRPFIPVNCAAIPKDLMESELFGHVKGSFTGALSDRQGAAQRAHHGTLFLDE 248 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IG++ +Q +LLR +Q +VQ+VG+ + VDVR++ AT+RD EV GRFR+DLYYR Sbjct: 249 IGELPLDLQSKLLRFLQTGQVQKVGAQKGEVVDVRILCATNRDPWEEVQEGRFREDLYYR 308 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNV+ + +P LR+R +D+ LLA H LQ+++ +K F+ +A L++ + WPGN+REL Sbjct: 309 LNVIPLHLPPLRKRDQDVLLLAHHLLQQYSREEKKGFTRFSGEAEQLILGHRWPGNVREL 368 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPI--------------PLGQSQDIQPLVEVEK 407 +N + AVVL G + LP + + +I PL EK Sbjct: 369 QNVIRHAVVLNDGTLLEAAMLPPPVGGSMGRHMTVPPQNKMLLQEGATDDEILPLWVEEK 428 Query: 408 EVILAALEKTGGNKTEAARQLGITRKTLLAK 438 +I AL++ G N +AA +L I T+ K Sbjct: 429 RIIERALKQCGDNIPQAAARLQINPSTIYRK 459 >UniRef50_Q027R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=Q027R3_SOLUE Length = 477 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 177/462 (38%), Positives = 252/462 (54%), Gaps = 25/462 (5%) Query: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMD 63 I +L+VDD+ S L A++ WG A G +ALE + D++L D+ M +D Sbjct: 3 QQIRVLIVDDEESQRAGLAAMVSAWGMLPKTAADGNEALETLNSFPADVILTDLNMPGLD 62 Query: 64 GIATLKEIKALNPAIPVLIMTAYSSVETAVEALK-TGALDYLIKPLDFDNLQATLEKA-- 120 G L+ ++ P +++TAY ++ETAV+ + GA +L KP+ L+ + +A Sbjct: 63 GFGFLQRLREAGDMPPTIVLTAYGNIETAVKTVHELGAYWFLEKPIQAGTLEVLVRRAGS 122 Query: 121 ---LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKEL 177 L + S MVGKSP MQ + + + PS A VLI G+SGTGKE+ Sbjct: 123 HAELNQEKRVLERNLVYKGSLGEMVGKSPRMQEIFALLQQAGPSRAGVLITGESGTGKEM 182 Query: 178 VARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTL 237 VAR +HA S R + P V +NCAAL ESL+ESELFGHEKG+FTGA +RR G F A GTL Sbjct: 183 VARTLHALSPRRQGPFVAINCAALPESLIESELFGHEKGSFTGATERRAGCFELAQNGTL 242 Query: 238 FLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQD 297 LDEIG++ Q +LLR +++ +V+R+G VDVR++AAT++ V G R+D Sbjct: 243 LLDEIGEMPMATQAKLLRILEDSKVRRLGGRTEFEVDVRVVAATNKVPEEAVQGGHLRED 302 Query: 298 LYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGN 357 L+YRLNV + +P LR R++DI +A + ++ V M L ++WPGN Sbjct: 303 LFYRLNVFHVHLPPLRDRKDDIQAMADALIADLNRKHECRVTEIAAAVMTCLQRHNWPGN 362 Query: 358 IRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQ----------------- 400 +REL N +ERAV+L I + LP+ + + P + S + Sbjct: 363 VRELRNVLERAVILAGEGTIEVKHLPVFLQNRPATVVASDEPAAVAATAADDLETVRFLI 422 Query: 401 --PLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 440 + E EK +IL LE T NKT AA LGI+ KTL KL Sbjct: 423 GTTVEEAEKGLILRTLEHTNNNKTRAADILGISLKTLHNKLK 464 >UniRef50_Q47I00 Helix-turn-helix, Fis-type n=35 Tax=Proteobacteria RepID=Q47I00_DECAR Length = 457 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 185/458 (40%), Positives = 271/458 (59%), Gaps = 27/458 (5%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M N+ ILVV+DD S + L G + G AL+ + EQ F +V+ DVRM Sbjct: 1 MAEHNLPILVVEDDPSLREAIADTLELAGRPCVAVDGGEAALKVLEEQAFSIVVSDVRMM 60 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 MDGI LKEI+A P +PV++MTAY+ V+ AV+A+++GA D+L+KP + L A + K Sbjct: 61 PMDGITLLKEIRARLPHLPVVLMTAYAEVDKAVDAMRSGACDFLLKPFEPQALLAHINK- 119 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + G+V PA + L + VA ++ATVL+ G+SG GKE+VAR Sbjct: 120 ---------YELPASDDGSGVVAIDPASRELFAVAQRVAQTDATVLLTGESGVGKEVVAR 170 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH SAR P V +NCAA+ +SLLE+ LFG+EKGAFTGA + + G+F +A GTL LD Sbjct: 171 FIHRQSARKNGPFVAINCAAIPDSLLEATLFGYEKGAFTGAQQAQAGKFEQAQDGTLLLD 230 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ ++ +Q +LLR +QEREV+RVG + +++++R+IA ++RD+A V G FR+DLYY Sbjct: 231 EVTEMPMGLQAKLLRVLQEREVERVGGKKPVALNIRIIATSNRDMAEAVAKGVFREDLYY 290 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV + +PSLRQRR DI +A HF+ R + +P A L + WPGN+RE Sbjct: 291 RLNVFPVGIPSLRQRRGDIVPIARHFVVEHGGRFGRTGMSLSPAAEAALREHSWPGNVRE 350 Query: 361 LENAVERAVVLLTGEYISERELPLAIASTPIPL-----------------GQSQDIQPLV 403 LEN ++RA+++ TG I L LA S+ + + + Sbjct: 351 LENVIQRALIMATGSTIGPEVLNLAPRSSGETAVVQPAAAPMPVEHSGLTDTDKKVDNMK 410 Query: 404 EVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 ++E+E IL L + GG++ +A +LGI+ +TL KL + Sbjct: 411 DLEREHILRTLAEVGGSRKKAIERLGISERTLRYKLQQ 448 >UniRef50_C5CF13 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CF13_KOSOT Length = 446 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 173/447 (38%), Positives = 256/447 (57%), Gaps = 16/447 (3%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 +LVVDDD++ IL L GY V A+ + A E ++E+ FD L D+R+ + DG Sbjct: 2 KRKLLVVDDDMAFNLILCEALESEGYLVTKAHDLKSAKELLQEESFDCALLDIRLPDGDG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 I + ++ V++M+A+ ++ETAV A+K GA ++L KP D ++ +E+AL Sbjct: 62 IELIDFARSQ--ETIVIVMSAHGNIETAVSAVKKGAYNFLEKPFDLNHALVEVERALKFA 119 Query: 125 HSIDAETPAVTASQ-----FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVA 179 + + ++G S ++ + I +AP + TVLI G+SGTGKE++A Sbjct: 120 ELQREHRLLLKKVKQLGFTDELLGVSESIVSIKKLIENIAPKKVTVLIQGESGTGKEVIA 179 Query: 180 RAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL 239 R IH S R E V +NC A+ E+L ESE+FG+EKGAFTGA ++G EAD GTLFL Sbjct: 180 RMIHKLSGRKE--FVDINCGAIPENLFESEIFGYEKGAFTGAGDSKKGLVEEADRGTLFL 237 Query: 240 DEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 DEI ++ +Q +LLR I+ QR+GS + DVR+I AT+RDL V G+FR+DL+ Sbjct: 238 DEISELPITLQPKLLRFIETGTFQRIGSTKRKKTDVRIICATNRDLEKLVEEGKFREDLF 297 Query: 300 YRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNR-KAVKGFTPQAMDLLIHYDWPGNI 358 YRLNVV I++P LR+R EDI +LA F++ + + + + L++Y WPGN+ Sbjct: 298 YRLNVVRIKLPPLRERPEDIAILAKQFVKDISAELGLRKRPKISETFIQALMNYHWPGNV 357 Query: 359 RELENAVERAVVLL---TGEYISERELPLAIAST-PIPLGQSQDIQPLVEVEKEVILAAL 414 REL N + +L + E + E L + S S + L E+EK I L Sbjct: 358 RELRNCL--LSILAVHDSSETLEEWMLFDVLGSRIDNSRDASNEDLTLEELEKRYIRKLL 415 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 +K GNKT+ A+ LGI++ TL KL R Sbjct: 416 KKYSGNKTKVAQVLGISKSTLYEKLKR 442 >UniRef50_B3E861 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter lovleyi SZ RepID=B3E861_GEOLS Length = 462 Score = 584 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 182/447 (40%), Positives = 253/447 (56%), Gaps = 15/447 (3%) Query: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67 ILVVDD+ S L +L GY V A +G AL+ +RE+V DLVL D+ M MDGI T Sbjct: 5 ILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLIREEVPDLVLLDIWMPGMDGIQT 64 Query: 68 LKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSI 127 L++I+ L P + V++M+ + ++ETAV+A + GA D++ KP D + T+ AL Sbjct: 65 LEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKVLITIANALNFKELR 124 Query: 128 DAETPAV--TASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHAS 185 + MVG S ++ L +I +AP+ VLIHG+ G GKELVARAIH Sbjct: 125 KENEALRLSALKEHEMVGASAGVELLRGQIQRIAPASTPVLIHGEEGVGKELVARAIHHY 184 Query: 186 SARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI 245 S R +KP V +NC A+ E+LL ELFGHE+GA+TGA+ ++ GR ADGGT+FLDE+ ++ Sbjct: 185 STRRDKPFVAVNCMAVPEALLADELFGHERGAYTGANSQKRGRLDLADGGTVFLDEVHEL 244 Query: 246 SPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV 305 S Q LLR + + +R G ++ + +DVR++AAT R L V G FR+DLY L VV Sbjct: 245 SLKAQGELLRILTDHSFERCGGSRPVRIDVRVVAATSRSLERAVQDGLFREDLYQFLQVV 304 Query: 306 AIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAV 365 E+ LR+R EDIPLL HF++ F R K F A+ L YDWPGNIREL+N V Sbjct: 305 PFELVPLRERSEDIPLLVKHFVRLFHRREGWEPKTFDDSALACLKSYDWPGNIRELKNIV 364 Query: 366 ERAVVLLTGEYISERELP-------------LAIASTPIPLGQSQDIQPLVEVEKEVILA 412 ER +++ G I+ +LP L A+ E++ IL Sbjct: 365 ERILIMAAGPVITADDLPALMPGGNCKASSRLQEAAEQGEAAVGSLRSARERFERDFILQ 424 Query: 413 ALEKTGGNKTEAARQLGITRKTLLAKL 439 L ++ N +AA L + R L KL Sbjct: 425 TLLRSAWNLDKAAALLEMERTVLQRKL 451 >UniRef50_D2R521 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R521_9PLAN Length = 474 Score = 584 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 205/450 (45%), Positives = 286/450 (63%), Gaps = 13/450 (2%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 ILVVDD+ + +LR G +V + S +AL+++ Q FDL+L D++M MDG Sbjct: 11 TGRILVVDDNARARQSMCDVLRHAGNDVQMCASAIEALQKLPSQEFDLILTDLQMPGMDG 70 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + ++ ++ V+++TA++SV +AVEA++ GALDYL KP D D L+ +++ALA Sbjct: 71 LQFIRALQDRKIDSQVVMVTAFASVSSAVEAMRHGALDYLEKPFDADQLEQLVQRALARG 130 Query: 125 HSIDAETPAVTASQ---FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 A + ++SQ M+G S AMQ L S+IA+ AP+ TVLI G+SGTGKELVAR Sbjct: 131 RRGAAHSAVTSSSQPWHSMMIGTSSAMQRLRSQIAVAAPTGETVLISGESGTGKELVARC 190 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 +HA+S R+ K LV+LNC AL+ L+ESELFGHE+GAFT AD R GRF ADGGT+ LDE Sbjct: 191 VHAASGRATKALVSLNCPALSPQLMESELFGHERGAFTSADAPRVGRFELADGGTILLDE 250 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 I +I +Q +LLR +QE+ +RVGS++ + VDVR+IA T+R++ EV AGRFRQDL+YR Sbjct: 251 ITEIELPLQAKLLRVLQEKSFERVGSSETLEVDVRVIATTNREIRQEVVAGRFRQDLFYR 310 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 L VV + VP+LR RRED+PLL HFL A R ++ A DLL Y WPGN+REL Sbjct: 311 LAVVPLVVPALRDRREDVPLLVEHFLGAAAVRLERSPITVDRAASDLLCSYHWPGNVREL 370 Query: 362 ENAVERAVVLLTGEYISEREL------PLAIASTPIPLGQSQD----IQPLVEVEKEVIL 411 EN + RA +L T E +S +L P A+ S + L ++E+ +I Sbjct: 371 ENLMTRASILATSEKLSADDLRSWLLEPEAMHSAGSGNSSGESELQAGMKLEDMERRLIE 430 Query: 412 AALEKTGGNKTEAARQLGITRKTLLAKLSR 441 A L+ G++ AA+ LGI +TL KL + Sbjct: 431 ATLDHYEGHRARAAQALGIGIRTLSNKLRQ 460 >UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=Enterobacteriaceae RepID=D0ZDB7_EDWTE Length = 446 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 196/440 (44%), Positives = 269/440 (61%), Gaps = 6/440 (1%) Query: 2 THDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAE 61 + + +L+VDDD S +L L G+ V A SG++AL + DLV+ D+RM E Sbjct: 3 SAHSASLLLVDDDPSLLKLLGMRLSSEGFRVTTAASGQEALRLLARDPIDLVISDLRMDE 62 Query: 62 MDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 MDG+A EI+ P +PV+I+TA+ S+ AV A + G +L KP+D D L ++ AL Sbjct: 63 MDGLALFSEIQRRQPGLPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYRAIDDAL 122 Query: 122 AHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARA 181 A + + A V +SP M LL + +VA S+ +VLI+G SGTGKEL+ARA Sbjct: 123 AQSMPQGGDDAWRQA----FVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKELLARA 178 Query: 182 IHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 IH +S R+ K + +NC AL E LLESELFGH KGAFTGA REG F A GGTLFLDE Sbjct: 179 IHRASPRAGKAFIAINCGALPEQLLESELFGHAKGAFTGAVSSREGLFQAAAGGTLFLDE 238 Query: 242 IGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYR 301 IGD+ +QV+LLR +QER+V+ +GSN+ + +DVR+I+ATHR+L + G FR+DL+YR Sbjct: 239 IGDMPLTLQVKLLRVLQERKVRPLGSNRDLDIDVRIISATHRNLPKAMELGEFREDLFYR 298 Query: 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIREL 361 LNVV++ +P+L QR EDIPLLA H L++ AER++ V+ F+ AM L+ WPGN+R+L Sbjct: 299 LNVVSLRLPALNQRPEDIPLLAAHLLRQAAERHKPLVRSFSSGAMKALMSASWPGNVRQL 358 Query: 362 ENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNK 421 N +E+ V L T I E + A+ L ++ E + L+ T GN Sbjct: 359 VNVIEQCVALTTAPVIGEALVEQALQGENTAL--PTFVEARHHFELHYLRKLLQITKGNV 416 Query: 422 TEAARQLGITRKTLLAKLSR 441 T AAR G R LSR Sbjct: 417 THAARMAGRNRTEFYKLLSR 436 >UniRef50_C6XZM7 Sigma-54 factor interaction domain-containing protein n=23 Tax=Bacteroidetes RepID=C6XZM7_PEDHD Length = 468 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 174/460 (37%), Positives = 264/460 (57%), Gaps = 25/460 (5%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 +L++DD+ + + L+ +L Y V ++G LE ++++ FDLVLCD++M +MDG+ Sbjct: 2 AKLLIIDDERAIRSTLREILEYENYEVEDIDNGIDGLELIKKKKFDLVLCDIKMNKMDGM 61 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L++ A +P +P ++++ + +VETA+EA K GA D++ KP D + L T+ AL + Sbjct: 62 EVLEQALAYSPDLPFIMISGHGTVETAIEASKKGAFDFISKPPDLNRLLITVRNALDRGN 121 Query: 126 SIDAETPAVT--ASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIH 183 + + ++G S + + I VAP+EA VLI G +G+GKELVAR +H Sbjct: 122 LVTETKVLKRKVSKTRDILGSSENIGKIKETIERVAPTEARVLITGANGSGKELVARWLH 181 Query: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 S R+E PL+ +NCAA+ L+ESELFGHEKG+FT A K+R G+F A+GGTLFLDEIG Sbjct: 182 EKSQRAESPLIEVNCAAIPSELIESELFGHEKGSFTSAVKQRIGKFELANGGTLFLDEIG 241 Query: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 D+S Q ++LRA+QE ++ RVG + + V+VR++AAT++DL E+ AG FR DLY+RLN Sbjct: 242 DMSLSAQAKVLRALQEHKITRVGGEKELEVNVRVLAATNKDLLKEIEAGNFRMDLYHRLN 301 Query: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363 V+ I VP L +R EDIP +A +FL+ VK + AM L W GN+REL N Sbjct: 302 VINIHVPHLTERTEDIPEIALNFLEEICRDYGMPVKKISDGAMTALQALPWTGNVRELHN 361 Query: 364 AVERAVVLLTGEYISEREL------------------PLAIASTPIPLGQSQDIQPLVEV 405 +ER ++L + I+E ++ P + Sbjct: 362 MIERLIILSD-KVITENDVIAFANPGGGTNIGAVNTANGQSGLAHGPTVDYDKFNNFQDY 420 Query: 406 ----EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 E+E I LEK N ++ A + I R L +K+ + Sbjct: 421 KDHAEREFIKFKLEKNNWNVSKTADDIEIQRSHLYSKIEK 460 >UniRef50_A7HD97 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A7HD97_ANADF Length = 452 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 197/447 (44%), Positives = 268/447 (59%), Gaps = 13/447 (2%) Query: 6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGI 65 ILVVDDD +L LL ++V AL + ++ D++L D+RM +DGI Sbjct: 2 ARILVVDDDPLAQRVLVRLLCPA-HDVHAYGDPAAALRHLADRGADVILTDLRMPGLDGI 60 Query: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTH 125 L + L+P + V ++T +SS+ +AVEA K GA DYL KP + D++ +E+A+ Sbjct: 61 ELLSRARELDPEVLVFVITGHSSIASAVEATKRGAEDYLSKPFEPDDVLLRVERAIERRR 120 Query: 126 SI-----DAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + E A + + P M L A +++TVL+ G++G GKE+VAR Sbjct: 121 LLARVRLQEEAAAPGGAHGVFLSPHPRMAALAEFARKAARTDSTVLVQGETGVGKEIVAR 180 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 +H S R+ + V++NC AL E+LLESELFGHE+GAFTGA RR G F ADGGT+ LD Sbjct: 181 LVHQWSPRAGRAFVSINCGALPETLLESELFGHERGAFTGAMARRAGYFEAADGGTILLD 240 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 EIG SP QVRLLR +QER VQRVG I+VDVR+IAAT+ DL GRFR+DLYY Sbjct: 241 EIGATSPAFQVRLLRVLQERVVQRVGGTTPIAVDVRVIAATNEDLERAAGEGRFRKDLYY 300 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RL VV + VP LR+RRED+ LA HFL+++ AV+G +P+ + L+ YD+PGN+RE Sbjct: 301 RLGVVTLVVPPLRERREDVGPLAEHFLRKY-RHVNPAVRGVSPEGLAKLVAYDYPGNVRE 359 Query: 361 LENAVERAVVLLTGEYISEREL------PLAIASTPIPLGQSQDIQPLVEVEKEVILAAL 414 LEN VERA++L TGE +S L LA + + + + E+E I L Sbjct: 360 LENVVERAMILETGEALSPGSLLVGPGAALAGSRAERADAPQPEPVAIDDAEREHIRRVL 419 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 E+ GG + EAAR LGI + TL KL R Sbjct: 420 ERCGGRRGEAARLLGIDKSTLWRKLKR 446 >UniRef50_C7LX78 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX78_DESBD Length = 446 Score = 582 bits (1502), Expect = e-165, Method: Composition-based stats. Identities = 205/447 (45%), Positives = 278/447 (62%), Gaps = 16/447 (3%) Query: 5 NIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDG 64 N ILVVDD+I + + +LR G++V A S ALE + + D+V+ DVRM G Sbjct: 2 NRSILVVDDEIRYRELYARVLRDAGFDVHEAGSAADALEFMDRRTPDMVVSDVRMPAESG 61 Query: 65 IATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 + L+ ++A P +P L++TAY+ V AV+ALK GA+DYL KP+D D L A + L Sbjct: 62 LDLLRRVRAEKPELPFLLVTAYADVREAVDALKLGAVDYLAKPVDLDELLAAVRDTLGVG 121 Query: 125 HSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHA 184 E PA AS G+V +S AM+ +L + VAPS+AT+L+ G+SG+GKE+VA+ IH Sbjct: 122 AGAGGEIPA--ASLTGIVAESLAMRSVLRDAYRVAPSDATILLTGESGSGKEIVAQFIHR 179 Query: 185 SSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGD 244 SARS KPLV +NCAA+ +LL SELFGHEKGAFTGA +R+G F EA GTLFLDEIGD Sbjct: 180 HSARSAKPLVPVNCAAIAPTLLASELFGHEKGAFTGAVTKRKGYFREAHEGTLFLDEIGD 239 Query: 245 ISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 + +Q LLRA + + VGS++ +D RLIAAT+ DL +V GRFRQDLYYRLNV Sbjct: 240 MPLELQPSLLRATETGRITPVGSDKETVIDCRLIAATNHDLETDVAEGRFRQDLYYRLNV 299 Query: 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENA 364 + I++P LR+R EDIP LA FL + ++ + + AM LI + WPGN+REL NA Sbjct: 300 ITIDIPPLRERPEDIPPLARLFLNK----DKTEARRLSRAAMQTLISHPWPGNVRELANA 355 Query: 365 VERAVVLLTGEYISERELPLAIAST----------PIPLGQSQDIQPLVEVEKEVILAAL 414 + +L + I LP A+ + P+ + L + E E + AAL Sbjct: 356 MAHVRLLSQTDVILPEHLPPAVRKSAGKAAPESRIPVEQDAPAQTKTLEQHEIEAVTAAL 415 Query: 415 EKTGGNKTEAARQLGITRKTLLAKLSR 441 + T GN+T AA+ LGITR+ L+ KL R Sbjct: 416 KHTKGNRTHAAQLLGITRRGLIYKLKR 442 >UniRef50_Q5ZUN1 Sigma 54-dependent response regulator n=10 Tax=Gammaproteobacteria RepID=Q5ZUN1_LEGPH Length = 453 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 176/442 (39%), Positives = 264/442 (59%), Gaps = 14/442 (3%) Query: 1 MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA 60 M+H +L+V+DD L + G+ A G++AL + +VL D+RM Sbjct: 17 MSH----VLIVEDDSVLREALAETMTISGHTYITAKDGKEALALLELHNPSVVLTDIRMD 72 Query: 61 EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA 120 ++DG L EI+ P +PV++MTAY SVE AV A++ GA+DYL KP L +++ Sbjct: 73 KLDGNQLLNEIQKKRPGLPVILMTAYGSVEDAVTAIRNGAVDYLQKPFSAQVLIEKIKQY 132 Query: 121 LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR 180 + ++ + + P Q LL+ VA S+ V+I G+SGTGKE++A Sbjct: 133 IKT---------DLSEEDNDPIARDPKSQALLTMALRVAQSDVGVMISGESGTGKEVLAH 183 Query: 181 AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 IH S RS++P + +NCAA+ E +LE+ LFG+EKGAFTGA K G+F +A GGTL LD Sbjct: 184 FIHDHSYRSKQPFIAINCAAIPEQMLEATLFGYEKGAFTGAYKSTPGKFEQAQGGTLLLD 243 Query: 241 EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY 300 E+ ++S +Q +LLR +QE+EV+R+GSN+II++DVR+IA T+R L EV AGRFR+DLYY Sbjct: 244 EVSEMSLGLQAKLLRVLQEKEVERIGSNKIINLDVRIIATTNRQLKEEVQAGRFREDLYY 303 Query: 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 RLNV ++ LR+R DI LA + +++ + + V +P A ++ Y WPGN RE Sbjct: 304 RLNVFPLQWHPLRERTSDIIPLANYLIRKHCQHKQPIVPVISPDAQKAMLSYSWPGNARE 363 Query: 361 LENAVERAVVLLTGEYISERELPLAIAST-PIPLGQSQDIQPLVEVEKEVILAALEKTGG 419 L+N ++RA+VL T I E L + ++T P + L E E+I L + G Sbjct: 364 LDNVIQRALVLQTQGIIEEEHLQITNSTTMPSEEKTKGTSKNLQIHEYELIEKTLLENEG 423 Query: 420 NKTEAARQLGITRKTLLAKLSR 441 N+ + A LG++ +TL KL++ Sbjct: 424 NRQKVAALLGVSERTLRYKLAK 445 >UniRef50_A0LDW4 Nitrogen metabolism transcriptional regulator, NtrC, Fis Family n=3 Tax=Proteobacteria RepID=A0LDW4_MAGSM Length = 504 Score = 581 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 188/495 (37%), Positives = 265/495 (53%), Gaps = 57/495 (11%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 ILV DDD + +L+ L GY V + + + + DL++ DV M Sbjct: 4 EAEQTILVADDDQAVRFVLEQALSRAGYKVHAFGNTQPLVNHFNQYGGDLIITDVVMPGG 63 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 G+ ++ +KA P +P+++MTA S++ AV+A + GA +YL KP D + L +AL Sbjct: 64 SGLDMVQSLKATYPDLPIIVMTAQSTLRNAVQAFERGAFEYLAKPFDINRLVDLTRRALQ 123 Query: 123 HTHSIDAET---------------PAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLI 167 + G++G S AMQ L I ++ SE TVLI Sbjct: 124 KQEERVRNQPQTKTKQQAAAEDMDRQLEERFGGIIGSSRAMQALFHTIGRLSNSEMTVLI 183 Query: 168 HGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREG 227 HG+SGTGKELVARA+HA S R P +N AA+ L+ESELFGHEKGAFTGA RR G Sbjct: 184 HGESGTGKELVARAVHAYSPRRRGPFTAINMAAIPRDLIESELFGHEKGAFTGAVSRRPG 243 Query: 228 RFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAA 287 F +A+GGTLFLDEIGD+ Q RLLR +QE VGS I+ DVR+IAATH+DL Sbjct: 244 HFQKAEGGTLFLDEIGDMPMEAQTRLLRVLQEGTFTLVGSTDILRSDVRIIAATHQDLPT 303 Query: 288 EVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMD 347 ++ GRFR+DL+YRLNV+ + VP+LR R+EDIP+L+ +FL + ++ + A K T AM+ Sbjct: 304 AISEGRFREDLFYRLNVIPLHVPTLRSRKEDIPVLSQYFLAKTSKELKVATKRLTQSAME 363 Query: 348 LLIHYDWPGNIRELENAVERAVVLLTGEYISERELP------LAIASTPIPLGQSQDIQP 401 L+ YDWPGN+RELEN + R VL+ + I ++ +A + + Q+ + Sbjct: 364 KLVAYDWPGNVRELENLIRRLTVLIPEDEIRPEKIELYERTMPKLARNDLSGHEPQEERS 423 Query: 402 ------------------------------------LVEVEKEVILAALEKTGGNKTEAA 425 L ++E +I L +T GN+ +AA Sbjct: 424 TESNTSHSYEAILLQDLDTFFATMGGLETSGVYDMVLRKMEAVLIPRVLRQTRGNRVKAA 483 Query: 426 RQLGITRKTLLAKLS 440 + LGI R TL K+ Sbjct: 484 QILGINRNTLRKKMR 498 >UniRef50_C1DWP8 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=2 Tax=Sulfurihydrogenibium RepID=C1DWP8_SULAA Length = 468 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 168/456 (36%), Positives = 263/456 (57%), Gaps = 17/456 (3%) Query: 3 HDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEM 62 D IL+VDD+ + +L GY V ++ + ++A+E V++ +DL++ D++M +M Sbjct: 2 EDKGYILIVDDEEDILVSFKEILEDEGYKVDISPNPKEAVEMVKQNDYDLIISDLKMPQM 61 Query: 63 DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKP--LDFDNLQATLEKA 120 G LKEI+ N +++TAY +VETAV+ +K GA +Y+ KP + D + +++A Sbjct: 62 TGDQFLKEIRKFNNVASFIVLTAYGTVETAVDCMKHGAFNYISKPIDFNDDRTWSMIKEA 121 Query: 121 LAHTHSIDA--------ETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSG 172 + T ++ G++ +P M+ +L + +A + TVLI+G+SG Sbjct: 122 IELAKYKKNTFFYKNYLSTLKNSSDIEGIITVNPLMKEILDYLKKIANFDFTVLIYGESG 181 Query: 173 TGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA 232 GKEL A+AIH S R K + +NCA +++ ++ESE FG +KG FTGAD R G A Sbjct: 182 VGKELFAKAIHQLSNRRNKVFLPINCATISKDVMESEFFGVKKGVFTGADTDRPGILELA 241 Query: 233 DGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAG 292 DGGT+FLDEI ++ +Q + LR +QE+EV+R+G VDVR+IAAT++DL V Sbjct: 242 DGGTVFLDEISEMPLDLQAKFLRFLQEKEVRRIGDTVSKKVDVRVIAATNKDLKQLVKEE 301 Query: 293 RFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 +FR+DLY+RL + IE+P LR+R+EDIP+LA HFL+ F ++ + +KGFT +A+ LL++Y Sbjct: 302 KFREDLYFRLEGIKIEIPPLRERKEDIPVLAYHFLEEFNKKYQTDIKGFTEEALQLLVNY 361 Query: 353 DWPGNIRELENAVERAVV--LLTGEYISERELPLAIASTPIPLG-----QSQDIQPLVEV 405 W GN+R+LEN V A + L EYI LP I+ Sbjct: 362 HWEGNVRQLENVVREACIIALAKKEYIDVSCLPSYISGQDNSKAMIFDYNLAKKLNDQAF 421 Query: 406 EKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 + + L T GN ++AA+ I R++L L + Sbjct: 422 TTKYLKNLLAFTKGNISKAAKLANIERQSLQKLLKK 457 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.206 0.786 Lambda K H 0.267 0.0627 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,255,421,659 Number of Sequences: 3077464 Number of extensions: 301730037 Number of successful extensions: 868996 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 43615 Number of HSP's successfully gapped in prelim test: 13854 Number of HSP's that attempted gapping in prelim test: 737766 Number of HSP's gapped (non-prelim): 72047 length of query: 441 length of database: 1,040,396,356 effective HSP length: 132 effective length of query: 309 effective length of database: 634,171,108 effective search space: 195958872372 effective search space used: 195958872372 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 96 (41.0 bits)