17/01/2012 14:03:42 : INFO  : Run start: Tue Jan 17 14:03:42 GMT 2012
17/01/2012 14:03:47 : INFO  : Initialised job
17/01/2012 14:03:48 : INFO  : Renaming log file 'phyre2_20120117_140341.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/f96fd4137ff0b0e9/phyre_20120117_140341.log'
17/01/2012 14:03:49 : INFO  : Initialised job:
Sequence
>batch____
MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMA
EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKA
LAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVAR
AIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD
EIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYY
RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE
LENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGN
KTEAARQLGITRKTLLAKLSR

17/01/2012 14:03:50 : INFO  : Checked sequence
17/01/2012 14:03:52 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 14:03:53 : INFO  : PSI-BLAST 3 iterations
17/01/2012 14:07:00 : INFO  : PSI-BLAST 5 iterations
17/01/2012 14:11:35 : INFO  : Finished PSI-BLAST
17/01/2012 14:11:36 : INFO  : Running Buildali to generate a3m file
17/01/2012 15:37:37 : INFO  : Converting to HMM
17/01/2012 15:38:02 : INFO  : Calibrating HMM
17/01/2012 15:38:22 : INFO  : Searching HMM database
17/01/2012 15:48:37 : INFO  : Finished buildali
17/01/2012 15:48:38 : INFO  : Predicting secondary structure
17/01/2012 15:48:45 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 15:48:46 : INFO  : Predicting Disordered regions
17/01/2012 15:48:49 : INFO  : Predicted Disorder (Disopred)
17/01/2012 15:48:50 : INFO  : Running memsat_svm check
17/01/2012 15:49:47 : INFO  : Globular protein
17/01/2012 15:49:47 : INFO  : Predicted Transmembrane (memsat_svm) ID 'f96fd4137ff0b0e9'
17/01/2012 15:49:50 : INFO  : Initialising fold library search
17/01/2012 15:49:51 : INFO  : Initialised search input
17/01/2012 15:49:52 : INFO  : Building Ensemble models
17/01/2012 15:49:54 : INFO  : Building hh.c1ny5A_.model.1.pdb
17/01/2012 15:50:03 : INFO  : Building hh.c3dzdA_.model.2.pdb
17/01/2012 15:50:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f96fd4137ff0b0e9/hh.c3dzdA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f96fd4137ff0b0e9/c3dzdA_.2.pdb
17/01/2012 15:50:16 : INFO  : Building hh.c3pfiB_.model.3.pdb
17/01/2012 15:50:25 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f96fd4137ff0b0e9/hh.c3pfiB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f96fd4137ff0b0e9/c3pfiB_.73.pdb
17/01/2012 15:50:27 : INFO  : Building hh.d1ntca_.model.4.pdb
17/01/2012 15:50:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f96fd4137ff0b0e9/hh.d1ntca_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f96fd4137ff0b0e9/d1ntca_.151.pdb
17/01/2012 15:50:37 : INFO  : Building c1ny5A_.1.pdb
17/01/2012 15:50:45 : INFO  : Building c3dzdA_.2.pdb
17/01/2012 15:50:52 : INFO  : Building c2c99A_.3.pdb
17/01/2012 15:51:00 : INFO  : Building d1ny5a2.4.pdb
17/01/2012 15:51:07 : INFO  : Building c1ojlF_.5.pdb
17/01/2012 15:51:15 : INFO  : Building c3co5B_.6.pdb
17/01/2012 15:51:23 : INFO  : Building c2ayxA_.7.pdb
17/01/2012 15:51:31 : INFO  : Building c1w25B_.8.pdb
17/01/2012 15:51:41 : INFO  : Building c3eq2A_.9.pdb
17/01/2012 15:51:52 : INFO  : Building d2ayxa1.10.pdb
17/01/2012 15:52:02 : INFO  : Building d1ny5a1.11.pdb
17/01/2012 15:52:13 : INFO  : Building c2rjnA_.12.pdb
17/01/2012 15:52:24 : INFO  : Building c3breA_.13.pdb
17/01/2012 15:52:36 : INFO  : Building d1ys7a2.14.pdb
17/01/2012 15:52:46 : INFO  : Building d1dbwa_.15.pdb
17/01/2012 15:52:56 : INFO  : Building d1jbea_.16.pdb
17/01/2012 15:53:07 : INFO  : Building d1kgsa2.17.pdb
17/01/2012 15:53:18 : INFO  : Building d1mvoa_.18.pdb
17/01/2012 15:53:28 : INFO  : Building d1qkka_.19.pdb
17/01/2012 15:53:38 : INFO  : Building d1peya_.20.pdb
17/01/2012 15:54:39 : INFO  : Finished HH model building
17/01/2012 15:54:41 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 15:55:28 : INFO  : html domain output complete ID 'f96fd4137ff0b0e9'
17/01/2012 16:09:00 : INFO  : Run end  : Tue Jan 17 16:09:00 GMT 2012
